Query 000720
Match_columns 1333
No_of_seqs 749 out of 4982
Neff 7.5
Searched_HMMs 46136
Date Mon Apr 1 22:44:04 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000720.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000720hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0054 Multidrug resistance-a 100.0 1E-238 3E-243 2253.4 125.2 1119 201-1331 122-1262(1381)
2 PLN03130 ABC transporter C fam 100.0 3E-179 6E-184 1805.6 155.7 1123 197-1331 222-1361(1622)
3 PLN03232 ABC transporter C fam 100.0 6E-176 1E-180 1776.2 156.1 1122 198-1331 223-1358(1495)
4 TIGR00957 MRP_assoc_pro multi 100.0 8E-174 2E-178 1757.2 156.6 1120 199-1331 199-1408(1522)
5 TIGR01271 CFTR_protein cystic 100.0 4E-169 9E-174 1705.8 136.6 1118 201-1330 3-1339(1490)
6 PTZ00243 ABC transporter; Prov 100.0 5E-160 1E-164 1616.7 137.9 1126 199-1330 57-1431(1560)
7 KOG0055 Multidrug/pheromone ex 100.0 3E-114 6E-119 1081.0 102.2 1033 273-1331 23-1113(1228)
8 PTZ00265 multidrug resistance 100.0 4E-104 9E-109 1063.3 125.7 1050 265-1331 50-1345(1466)
9 PRK11174 cysteine/glutathione 100.0 1.1E-65 2.3E-70 649.2 72.6 538 266-820 13-583 (588)
10 KOG0058 Peptide exporter, ABC 100.0 2.1E-65 4.5E-70 610.6 62.6 541 268-822 140-705 (716)
11 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 1.1E-62 2.3E-67 634.2 70.8 534 267-816 146-707 (710)
12 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 2.5E-62 5.3E-67 628.1 72.5 537 265-819 126-683 (686)
13 TIGR03375 type_I_sec_LssB type 100.0 3.1E-62 6.6E-67 627.9 72.9 530 265-808 137-688 (694)
14 TIGR00958 3a01208 Conjugate Tr 100.0 3E-62 6.6E-67 626.8 72.4 525 270-808 156-702 (711)
15 COG2274 SunT ABC-type bacterio 100.0 7.5E-62 1.6E-66 605.7 71.3 541 263-818 142-705 (709)
16 PRK11176 lipid transporter ATP 100.0 1.5E-60 3.4E-65 601.9 72.2 539 267-819 17-577 (582)
17 TIGR02203 MsbA_lipidA lipid A 100.0 2E-60 4.4E-65 600.0 72.6 538 267-818 6-565 (571)
18 TIGR01193 bacteriocin_ABC ABC- 100.0 2.1E-60 4.6E-65 612.3 72.4 531 268-817 149-705 (708)
19 PRK10790 putative multidrug tr 100.0 1.2E-59 2.7E-64 594.2 75.3 538 268-821 16-575 (592)
20 TIGR02204 MsbA_rel ABC transpo 100.0 2.4E-59 5.2E-64 590.6 71.9 541 266-818 9-572 (576)
21 TIGR01842 type_I_sec_PrtD type 100.0 1.9E-59 4.1E-64 585.9 69.9 520 272-808 3-542 (544)
22 KOG0055 Multidrug/pheromone ex 100.0 1.2E-59 2.5E-64 590.2 65.2 534 273-821 662-1225(1228)
23 PRK10789 putative multidrug tr 100.0 5E-59 1.1E-63 584.3 71.1 524 285-820 5-549 (569)
24 PRK13657 cyclic beta-1,2-gluca 100.0 1.6E-58 3.4E-63 583.2 73.0 533 269-820 13-569 (588)
25 PRK11160 cysteine/glutathione 100.0 1.7E-58 3.7E-63 579.6 71.9 537 269-818 10-571 (574)
26 TIGR02868 CydC thiol reductant 100.0 1.1E-58 2.4E-63 578.2 67.8 498 269-780 7-529 (529)
27 TIGR01846 type_I_sec_HlyB type 100.0 3.8E-58 8.3E-63 589.6 72.8 540 266-819 130-690 (694)
28 TIGR01192 chvA glucan exporter 100.0 5.3E-57 1.1E-61 566.9 73.9 533 269-820 13-569 (585)
29 TIGR02857 CydD thiol reductant 100.0 3E-57 6.4E-62 565.3 67.8 506 274-792 2-529 (529)
30 COG1132 MdlB ABC-type multidru 100.0 8.5E-57 1.8E-61 565.2 71.5 530 273-821 13-564 (567)
31 KOG0058 Peptide exporter, ABC 100.0 3.1E-58 6.8E-63 549.1 48.4 428 899-1331 155-591 (716)
32 COG4988 CydD ABC-type transpor 100.0 5.7E-56 1.2E-60 521.7 66.1 523 279-821 4-555 (559)
33 PTZ00265 multidrug resistance 100.0 6.8E-56 1.5E-60 596.9 72.8 536 271-819 821-1463(1466)
34 TIGR00957 MRP_assoc_pro multi 100.0 1.3E-54 2.9E-59 591.1 72.1 464 342-820 1033-1519(1522)
35 PLN03130 ABC transporter C fam 100.0 4.8E-54 1E-58 584.3 71.6 466 345-821 980-1474(1622)
36 KOG0057 Mitochondrial Fe/S clu 100.0 1.7E-53 3.7E-58 491.5 58.3 515 289-818 44-583 (591)
37 PLN03232 ABC transporter C fam 100.0 3E-53 6.6E-58 577.1 70.3 465 341-820 977-1470(1495)
38 PTZ00243 ABC transporter; Prov 100.0 7.8E-53 1.7E-57 572.0 71.1 459 353-820 1033-1545(1560)
39 COG4987 CydC ABC-type transpor 100.0 7.1E-52 1.5E-56 478.0 60.5 458 344-817 84-569 (573)
40 TIGR01194 cyc_pep_trnsptr cycl 100.0 7.7E-52 1.7E-56 517.5 65.1 504 269-800 11-551 (555)
41 PRK10522 multidrug transporter 100.0 1.9E-50 4.1E-55 504.9 64.4 500 265-800 3-530 (547)
42 COG2274 SunT ABC-type bacterio 100.0 2.2E-51 4.7E-56 512.1 53.9 434 894-1331 157-596 (709)
43 TIGR01271 CFTR_protein cystic 100.0 3.7E-50 7.9E-55 546.0 70.4 466 340-822 951-1453(1490)
44 KOG0056 Heavy metal exporter H 100.0 2.4E-52 5.1E-57 468.7 40.2 523 287-822 227-775 (790)
45 COG4618 ArpD ABC-type protease 100.0 1.4E-50 3E-55 462.4 55.0 525 263-808 11-560 (580)
46 TIGR02868 CydC thiol reductant 100.0 1.5E-50 3.3E-55 505.1 54.5 433 896-1331 18-457 (529)
47 TIGR00958 3a01208 Conjugate Tr 100.0 4.4E-50 9.6E-55 514.5 55.2 432 895-1330 165-603 (711)
48 COG1132 MdlB ABC-type multidru 100.0 2.4E-49 5.3E-54 497.7 53.6 429 897-1331 20-452 (567)
49 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 7.8E-49 1.7E-53 503.4 56.2 431 895-1331 140-575 (686)
50 PRK11174 cysteine/glutathione 100.0 6.4E-49 1.4E-53 496.5 54.6 446 879-1331 12-472 (588)
51 TIGR01193 bacteriocin_ABC ABC- 100.0 5.1E-49 1.1E-53 506.8 54.5 448 877-1331 144-598 (708)
52 TIGR00954 3a01203 Peroxysomal 100.0 6.4E-48 1.4E-52 488.6 61.3 502 276-794 97-653 (659)
53 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 1.7E-48 3.7E-53 502.4 55.4 452 877-1331 142-602 (710)
54 PRK10790 putative multidrug tr 100.0 3.4E-48 7.3E-53 490.1 55.0 429 896-1331 28-463 (592)
55 TIGR03375 type_I_sec_LssB type 100.0 6.8E-48 1.5E-52 495.3 55.4 448 877-1331 135-588 (694)
56 PRK11160 cysteine/glutathione 100.0 1.9E-47 4.2E-52 479.7 55.4 430 896-1329 21-461 (574)
57 TIGR02857 CydD thiol reductant 100.0 2.1E-47 4.5E-52 476.8 54.4 428 898-1330 10-444 (529)
58 TIGR02203 MsbA_lipidA lipid A 100.0 1.3E-46 2.8E-51 474.5 55.1 431 895-1330 18-455 (571)
59 PRK11176 lipid transporter ATP 100.0 1.6E-46 3.5E-51 474.4 55.6 429 898-1331 32-467 (582)
60 TIGR01846 type_I_sec_HlyB type 100.0 1.4E-46 3E-51 482.9 55.7 448 877-1331 127-580 (694)
61 KOG0054 Multidrug resistance-a 100.0 5.1E-46 1.1E-50 478.9 60.0 462 346-819 886-1373(1381)
62 TIGR02204 MsbA_rel ABC transpo 100.0 1.3E-45 2.9E-50 465.6 55.6 432 897-1330 24-462 (576)
63 PRK13657 cyclic beta-1,2-gluca 100.0 8.6E-45 1.9E-49 458.4 55.5 434 893-1330 21-457 (588)
64 COG5265 ATM1 ABC-type transpor 100.0 1.1E-45 2.5E-50 413.5 39.8 436 370-817 37-494 (497)
65 PRK10789 putative multidrug tr 100.0 6.1E-45 1.3E-49 457.1 51.3 396 930-1330 39-437 (569)
66 TIGR01192 chvA glucan exporter 100.0 2.2E-44 4.7E-49 452.8 55.7 431 895-1330 23-457 (585)
67 TIGR01194 cyc_pep_trnsptr cycl 100.0 4.5E-44 9.7E-49 447.6 53.3 429 897-1331 24-462 (555)
68 PRK09700 D-allose transporter 100.0 2.2E-45 4.7E-50 455.9 35.3 196 590-805 5-231 (510)
69 TIGR00956 3a01205 Pleiotropic 100.0 3.9E-45 8.4E-50 492.8 40.5 190 611-808 74-300 (1394)
70 KOG0056 Heavy metal exporter H 100.0 8E-46 1.7E-50 416.2 28.1 422 905-1331 229-661 (790)
71 PRK10261 glutathione transport 100.0 3.5E-45 7.6E-50 461.8 36.4 206 589-808 11-258 (623)
72 PRK13549 xylose transporter AT 100.0 4.3E-45 9.4E-50 452.5 35.8 197 590-802 5-226 (506)
73 PRK15134 microcin C ABC transp 100.0 1E-44 2.2E-49 451.5 33.9 204 590-806 5-244 (529)
74 TIGR01842 type_I_sec_PrtD type 100.0 1.4E-42 2.9E-47 434.2 53.1 422 897-1330 12-440 (544)
75 TIGR01257 rim_protein retinal- 100.0 2E-42 4.4E-47 463.7 57.7 201 589-808 927-1149(2272)
76 TIGR02633 xylG D-xylose ABC tr 100.0 1.6E-44 3.6E-49 447.3 34.9 192 591-801 2-223 (500)
77 PRK10762 D-ribose transporter 100.0 2.4E-44 5.2E-49 445.4 35.4 193 590-802 4-224 (501)
78 COG1123 ATPase components of v 100.0 1.8E-44 3.9E-49 427.1 32.4 205 590-808 5-244 (539)
79 TIGR03269 met_CoM_red_A2 methy 100.0 2E-44 4.4E-49 448.2 34.3 193 591-803 1-253 (520)
80 PRK15439 autoinducer 2 ABC tra 100.0 6.1E-44 1.3E-48 442.0 37.3 197 590-806 11-227 (510)
81 PRK15064 ABC transporter ATP-b 100.0 1.1E-43 2.5E-48 442.3 39.8 204 591-808 2-242 (530)
82 PRK10938 putative molybdenum t 100.0 5.2E-44 1.1E-48 441.7 34.6 196 590-806 3-222 (490)
83 COG4987 CydC ABC-type transpor 100.0 3.8E-42 8.3E-47 397.5 47.3 390 936-1331 67-461 (573)
84 PRK11819 putative ABC transpor 100.0 2.9E-43 6.4E-48 440.0 40.4 207 590-808 6-250 (556)
85 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 5.2E-43 1.1E-47 437.8 42.1 207 590-808 4-248 (552)
86 PRK11288 araG L-arabinose tran 100.0 1.4E-43 3.1E-48 438.5 35.9 191 590-800 4-221 (501)
87 COG4988 CydD ABC-type transpor 100.0 1.5E-41 3.3E-46 400.0 50.9 397 927-1329 40-442 (559)
88 PRK10522 multidrug transporter 100.0 3.7E-41 8.1E-46 421.3 53.4 378 937-1327 58-438 (547)
89 PRK10982 galactose/methyl gala 100.0 3.9E-43 8.4E-48 433.8 34.9 193 594-803 2-218 (491)
90 PRK14257 phosphate ABC transpo 100.0 2.5E-43 5.5E-48 410.0 25.4 262 524-809 22-314 (329)
91 KOG0057 Mitochondrial Fe/S clu 100.0 9.3E-41 2E-45 386.1 44.0 396 927-1330 74-473 (591)
92 COG1126 GlnQ ABC-type polar am 100.0 1.2E-42 2.7E-47 360.9 21.9 203 590-812 2-229 (240)
93 PRK10636 putative ABC transpor 100.0 9.6E-41 2.1E-45 421.7 40.5 206 591-808 2-236 (638)
94 PRK11147 ABC transporter ATPas 100.0 4.5E-40 9.7E-45 416.8 41.0 205 590-808 3-243 (635)
95 PLN03140 ABC transporter G fam 100.0 1E-38 2.2E-43 428.6 49.9 198 610-808 177-427 (1470)
96 COG0488 Uup ATPase components 100.0 1.7E-39 3.7E-44 393.6 36.0 206 590-808 3-240 (530)
97 PLN03073 ABC transporter F fam 100.0 1.2E-38 2.5E-43 403.4 41.8 205 589-808 176-431 (718)
98 COG5265 ATM1 ABC-type transpor 100.0 3.1E-39 6.8E-44 361.9 30.0 381 947-1331 2-386 (497)
99 COG4172 ABC-type uncharacteriz 100.0 8.2E-39 1.8E-43 355.5 32.0 206 589-808 5-247 (534)
100 COG1125 OpuBA ABC-type proline 100.0 2.8E-40 6.1E-45 349.0 17.2 210 591-818 2-235 (309)
101 COG1135 AbcC ABC-type metal io 100.0 6.5E-40 1.4E-44 357.1 19.5 214 591-816 2-239 (339)
102 COG1116 TauB ABC-type nitrate/ 100.0 1.3E-39 2.7E-44 349.7 20.6 188 590-797 3-211 (248)
103 COG1120 FepC ABC-type cobalami 100.0 2.8E-39 6.2E-44 354.4 21.2 199 590-808 2-228 (258)
104 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 4.1E-39 9E-44 351.0 20.9 199 589-808 3-227 (254)
105 TIGR00954 3a01203 Peroxysomal 100.0 1.1E-36 2.4E-41 386.2 45.7 422 893-1327 98-567 (659)
106 cd03289 ABCC_CFTR2 The CFTR su 100.0 1.7E-38 3.8E-43 360.5 26.1 221 590-820 2-236 (275)
107 COG1127 Ttg2A ABC-type transpo 100.0 1.2E-38 2.6E-43 336.3 22.9 204 588-812 6-239 (263)
108 COG3839 MalK ABC-type sugar tr 100.0 1.7E-38 3.6E-43 361.1 22.4 206 590-815 3-230 (338)
109 COG1118 CysA ABC-type sulfate/ 100.0 8.4E-39 1.8E-43 347.3 18.8 206 590-815 2-234 (345)
110 PRK13409 putative ATPase RIL; 100.0 1.2E-37 2.6E-42 387.9 29.6 169 611-795 87-287 (590)
111 cd03291 ABCC_CFTR1 The CFTR su 100.0 4.1E-37 9E-42 350.5 29.6 231 565-808 16-247 (282)
112 COG3842 PotA ABC-type spermidi 100.0 3.6E-38 7.9E-43 360.2 20.8 208 589-816 4-234 (352)
113 COG1117 PstB ABC-type phosphat 100.0 2.6E-38 5.7E-43 326.7 17.5 206 588-810 5-239 (253)
114 COG1136 SalX ABC-type antimicr 100.0 2.2E-37 4.8E-42 333.1 23.0 193 591-798 2-221 (226)
115 cd03250 ABCC_MRP_domain1 Domai 100.0 3.9E-37 8.3E-42 336.7 23.5 200 591-796 1-204 (204)
116 cd03252 ABCC_Hemolysin The ABC 100.0 1.1E-36 2.4E-41 341.1 25.8 210 591-808 1-225 (237)
117 COG3638 ABC-type phosphate/pho 100.0 2E-37 4.4E-42 326.2 17.4 204 589-808 2-237 (258)
118 COG1122 CbiO ABC-type cobalt t 100.0 5.9E-37 1.3E-41 336.7 21.3 200 590-808 3-228 (235)
119 COG3840 ThiQ ABC-type thiamine 100.0 7E-37 1.5E-41 307.8 18.6 197 591-808 2-219 (231)
120 PRK11650 ugpC glycerol-3-phosp 100.0 1.8E-36 4E-41 356.0 25.0 206 590-814 3-230 (356)
121 cd03288 ABCC_SUR2 The SUR doma 100.0 3.4E-36 7.4E-41 340.8 26.3 220 588-815 17-250 (257)
122 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 3.1E-36 6.7E-41 337.7 25.2 211 591-808 1-226 (238)
123 cd03254 ABCC_Glucan_exporter_l 100.0 2.8E-36 6E-41 336.1 24.6 210 590-808 2-226 (229)
124 TIGR01186 proV glycine betaine 100.0 8.3E-37 1.8E-41 357.7 21.3 196 611-815 6-226 (363)
125 TIGR02314 ABC_MetN D-methionin 100.0 1.8E-36 3.9E-41 353.1 23.6 204 591-810 2-232 (343)
126 cd03251 ABCC_MsbA MsbA is an e 100.0 4.1E-36 8.8E-41 335.9 25.0 210 591-808 1-225 (234)
127 cd03253 ABCC_ATM1_transporter 100.0 5.4E-36 1.2E-40 335.3 25.8 209 591-808 1-224 (236)
128 COG3845 ABC-type uncharacteriz 100.0 1.9E-35 4.1E-40 340.3 30.2 191 589-799 3-220 (501)
129 cd03244 ABCC_MRP_domain2 Domai 100.0 5.6E-36 1.2E-40 331.8 24.8 205 590-802 2-220 (221)
130 COG1124 DppF ABC-type dipeptid 100.0 4E-36 8.7E-41 319.2 22.4 205 590-809 3-232 (252)
131 PRK11432 fbpC ferric transport 100.0 6.7E-36 1.5E-40 350.2 24.5 205 590-814 6-232 (351)
132 TIGR03265 PhnT2 putative 2-ami 100.0 6.5E-36 1.4E-40 350.9 23.4 205 590-814 4-230 (353)
133 cd03261 ABC_Org_Solvent_Resist 100.0 7.6E-36 1.7E-40 333.8 22.3 198 591-808 1-226 (235)
134 cd03245 ABCC_bacteriocin_expor 100.0 1.6E-35 3.5E-40 327.9 24.5 204 590-801 2-220 (220)
135 PRK13631 cbiO cobalt transport 100.0 1.3E-35 2.8E-40 344.6 24.5 207 588-808 19-265 (320)
136 COG1129 MglA ABC-type sugar tr 100.0 1.1E-34 2.3E-39 342.2 32.0 197 589-801 7-227 (500)
137 PRK13643 cbiO cobalt transport 100.0 1.4E-35 3E-40 340.8 23.2 203 591-808 2-233 (288)
138 TIGR03258 PhnT 2-aminoethylpho 100.0 1.4E-35 3E-40 348.6 23.5 203 589-811 4-231 (362)
139 cd03296 ABC_CysA_sulfate_impor 100.0 2.3E-35 5E-40 330.7 24.2 198 591-808 3-226 (239)
140 PRK09452 potA putrescine/sperm 100.0 2.1E-35 4.6E-40 348.1 25.0 203 589-811 13-237 (375)
141 PRK13637 cbiO cobalt transport 100.0 1.6E-35 3.4E-40 340.2 23.2 206 590-808 2-234 (287)
142 PRK13634 cbiO cobalt transport 100.0 1.6E-35 3.6E-40 340.5 23.1 204 591-808 3-235 (290)
143 PRK10851 sulfate/thiosulfate t 100.0 2.6E-35 5.5E-40 345.9 24.8 203 590-812 2-230 (353)
144 PRK11000 maltose/maltodextrin 100.0 2.4E-35 5.2E-40 348.9 24.2 202 590-811 3-226 (369)
145 PRK13650 cbiO cobalt transport 100.0 2.2E-35 4.8E-40 337.8 22.9 202 590-808 4-229 (279)
146 COG2884 FtsE Predicted ATPase 100.0 1.5E-35 3.3E-40 301.0 18.6 192 591-801 2-219 (223)
147 PRK13651 cobalt transporter AT 100.0 3.3E-35 7.1E-40 339.2 23.8 205 590-808 2-254 (305)
148 PRK13537 nodulation ABC transp 100.0 2.9E-35 6.3E-40 340.3 23.4 200 589-808 6-227 (306)
149 cd03219 ABC_Mj1267_LivG_branch 100.0 2.5E-35 5.3E-40 330.0 22.1 198 591-808 1-232 (236)
150 cd03259 ABC_Carb_Solutes_like 100.0 2.8E-35 6.1E-40 324.3 21.4 191 591-801 1-213 (213)
151 PRK14250 phosphate ABC transpo 100.0 7.9E-35 1.7E-39 326.6 25.2 200 590-808 3-221 (241)
152 PRK13647 cbiO cobalt transport 100.0 3.3E-35 7.1E-40 335.5 22.4 198 590-806 4-225 (274)
153 cd03260 ABC_PstB_phosphate_tra 100.0 2.9E-35 6.3E-40 327.4 21.2 194 591-805 1-226 (227)
154 cd03265 ABC_DrrA DrrA is the A 100.0 3.5E-35 7.7E-40 325.1 21.3 196 591-806 1-219 (220)
155 cd03290 ABCC_SUR1_N The SUR do 100.0 5.8E-35 1.2E-39 322.9 22.9 197 592-796 2-218 (218)
156 PRK11153 metN DL-methionine tr 100.0 5.5E-35 1.2E-39 343.1 24.0 203 591-809 2-231 (343)
157 TIGR00960 3a0501s02 Type II (G 100.0 2.9E-35 6.3E-40 324.9 20.4 189 591-797 2-216 (216)
158 PRK13646 cbiO cobalt transport 100.0 5.1E-35 1.1E-39 336.0 23.2 205 590-808 2-235 (286)
159 cd03293 ABC_NrtD_SsuB_transpor 100.0 4E-35 8.7E-40 324.7 21.3 197 591-803 1-218 (220)
160 PRK11607 potG putrescine trans 100.0 6.5E-35 1.4E-39 344.6 24.2 205 588-812 17-243 (377)
161 cd03226 ABC_cobalt_CbiO_domain 100.0 4.4E-35 9.5E-40 320.7 21.0 187 593-798 2-205 (205)
162 PRK14242 phosphate transporter 100.0 1E-34 2.2E-39 328.5 24.1 203 589-808 5-237 (253)
163 TIGR02315 ABC_phnC phosphonate 100.0 7.5E-35 1.6E-39 327.6 22.9 197 591-806 2-233 (243)
164 cd03268 ABC_BcrA_bacitracin_re 100.0 7.2E-35 1.6E-39 319.8 22.1 191 591-801 1-208 (208)
165 cd03256 ABC_PhnC_transporter A 100.0 7.2E-35 1.6E-39 327.3 22.5 198 591-807 1-233 (241)
166 TIGR00972 3a0107s01c2 phosphat 100.0 1.2E-34 2.6E-39 326.6 24.2 202 590-808 1-232 (247)
167 PRK14273 phosphate ABC transpo 100.0 1.5E-34 3.2E-39 327.2 25.0 203 589-808 6-238 (254)
168 COG4615 PvdE ABC-type sideroph 100.0 4.1E-32 8.9E-37 300.9 43.5 502 266-800 4-529 (546)
169 cd03294 ABC_Pro_Gly_Bertaine T 100.0 6.5E-35 1.4E-39 332.4 21.8 187 611-809 37-251 (269)
170 TIGR01288 nodI ATP-binding ABC 100.0 9.9E-35 2.1E-39 336.4 23.6 201 588-808 2-224 (303)
171 PRK13635 cbiO cobalt transport 100.0 1.3E-34 2.9E-39 331.2 24.1 201 590-808 5-229 (279)
172 cd03263 ABC_subfamily_A The AB 100.0 1E-34 2.2E-39 321.5 22.4 197 591-806 1-219 (220)
173 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 5.5E-35 1.2E-39 323.1 20.3 191 591-797 1-218 (218)
174 cd03369 ABCC_NFT1 Domain 2 of 100.0 2E-34 4.2E-39 316.1 24.4 188 589-802 5-206 (207)
175 PRK14269 phosphate ABC transpo 100.0 1.4E-34 3E-39 325.7 23.9 202 590-808 2-230 (246)
176 COG4175 ProV ABC-type proline/ 100.0 4.4E-35 9.5E-40 318.0 18.9 217 590-818 4-264 (386)
177 PRK13641 cbiO cobalt transport 100.0 1.2E-34 2.6E-39 333.0 23.7 204 590-808 2-234 (287)
178 PRK13644 cbiO cobalt transport 100.0 1.2E-34 2.6E-39 330.9 23.4 199 591-808 2-224 (274)
179 cd03224 ABC_TM1139_LivF_branch 100.0 1E-34 2.2E-39 321.9 22.1 198 591-807 1-220 (222)
180 PRK09536 btuD corrinoid ABC tr 100.0 9.9E-35 2.1E-39 344.2 23.2 199 590-808 3-228 (402)
181 cd03235 ABC_Metallic_Cations A 100.0 9.5E-35 2.1E-39 320.1 21.3 188 593-801 2-213 (213)
182 cd03218 ABC_YhbG The ABC trans 100.0 1.2E-34 2.7E-39 323.5 22.5 198 591-808 1-222 (232)
183 PRK11247 ssuB aliphatic sulfon 100.0 1.5E-34 3.3E-39 326.1 23.3 196 589-804 11-219 (257)
184 cd03258 ABC_MetN_methionine_tr 100.0 1.5E-34 3.3E-39 322.9 23.0 202 591-808 2-230 (233)
185 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 1.4E-34 3.1E-39 323.7 22.8 198 591-808 2-221 (236)
186 COG1131 CcmA ABC-type multidru 100.0 9.7E-35 2.1E-39 332.9 21.8 200 590-808 4-226 (293)
187 cd03248 ABCC_TAP TAP, the Tran 100.0 1.7E-34 3.7E-39 321.0 23.1 203 588-797 9-226 (226)
188 PRK13536 nodulation factor exp 100.0 1.4E-34 3E-39 338.0 23.4 201 588-808 39-261 (340)
189 cd03301 ABC_MalK_N The N-termi 100.0 1.1E-34 2.4E-39 319.6 21.2 191 591-801 1-213 (213)
190 COG4555 NatA ABC-type Na+ tran 100.0 5.4E-35 1.2E-39 299.2 16.9 198 591-808 2-222 (245)
191 PRK13636 cbiO cobalt transport 100.0 1.9E-34 4.2E-39 330.7 23.6 200 590-808 5-231 (283)
192 PRK11629 lolD lipoprotein tran 100.0 1.7E-34 3.8E-39 322.4 22.7 197 590-802 5-228 (233)
193 cd03266 ABC_NatA_sodium_export 100.0 1.6E-34 3.4E-39 319.5 22.0 195 591-801 2-218 (218)
194 cd03295 ABC_OpuCA_Osmoprotecti 100.0 2E-34 4.3E-39 323.8 23.1 201 591-808 1-225 (242)
195 PRK10744 pstB phosphate transp 100.0 3.4E-34 7.4E-39 325.2 25.1 204 589-809 12-245 (260)
196 PRK11831 putative ABC transpor 100.0 2.7E-34 5.8E-39 327.4 23.7 201 589-809 6-234 (269)
197 PRK09493 glnQ glutamine ABC tr 100.0 3.2E-34 7E-39 321.7 23.9 198 591-808 2-225 (240)
198 PRK13640 cbiO cobalt transport 100.0 2.4E-34 5.1E-39 329.8 23.2 203 588-808 3-232 (282)
199 TIGR03415 ABC_choXWV_ATP choli 100.0 1.8E-34 3.9E-39 339.3 22.3 192 611-814 37-260 (382)
200 cd03269 ABC_putative_ATPase Th 100.0 2.2E-34 4.7E-39 316.5 21.3 191 591-801 1-210 (210)
201 PRK15079 oligopeptide ABC tran 100.0 3.9E-34 8.5E-39 333.4 24.4 218 588-816 6-259 (331)
202 cd03264 ABC_drug_resistance_li 100.0 2.1E-34 4.5E-39 316.9 20.9 189 591-801 1-211 (211)
203 PRK14235 phosphate transporter 100.0 4.3E-34 9.2E-39 325.4 24.1 205 587-808 16-251 (267)
204 PRK13649 cbiO cobalt transport 100.0 2.8E-34 6E-39 329.5 22.7 205 590-808 2-234 (280)
205 PRK11264 putative amino-acid A 100.0 3.6E-34 7.8E-39 323.4 23.3 199 590-808 3-233 (250)
206 PRK10619 histidine/lysine/argi 100.0 4.2E-34 9.2E-39 324.0 23.7 202 588-808 3-241 (257)
207 PRK14268 phosphate ABC transpo 100.0 4.1E-34 8.9E-39 324.2 23.6 204 589-809 11-243 (258)
208 PRK14274 phosphate ABC transpo 100.0 4.9E-34 1.1E-38 323.8 24.2 202 590-808 12-243 (259)
209 PRK14251 phosphate ABC transpo 100.0 4E-34 8.6E-39 323.2 23.2 202 590-808 4-235 (251)
210 PRK14259 phosphate ABC transpo 100.0 6.4E-34 1.4E-38 324.2 25.0 204 588-808 11-253 (269)
211 TIGR02211 LolD_lipo_ex lipopro 100.0 3.5E-34 7.7E-39 317.4 21.9 192 591-798 2-220 (221)
212 PRK14270 phosphate ABC transpo 100.0 6.4E-34 1.4E-38 321.4 24.3 202 590-808 4-235 (251)
213 PRK14239 phosphate transporter 100.0 5.4E-34 1.2E-38 322.4 23.7 203 590-809 5-237 (252)
214 PRK13645 cbiO cobalt transport 100.0 4.2E-34 9.2E-39 329.2 23.2 204 589-808 5-240 (289)
215 PRK11231 fecE iron-dicitrate t 100.0 4.7E-34 1E-38 323.2 23.2 198 591-808 3-227 (255)
216 cd03298 ABC_ThiQ_thiamine_tran 100.0 4.7E-34 1E-38 314.1 22.5 189 591-801 1-211 (211)
217 PRK10070 glycine betaine trans 100.0 4E-34 8.6E-39 338.8 23.4 210 590-811 4-257 (400)
218 PRK14245 phosphate ABC transpo 100.0 4.9E-34 1.1E-38 322.2 23.0 202 590-808 3-234 (250)
219 PRK14248 phosphate ABC transpo 100.0 7.2E-34 1.6E-38 324.0 24.6 203 589-808 20-252 (268)
220 PRK13632 cbiO cobalt transport 100.0 4.5E-34 9.9E-39 325.9 22.9 202 589-808 6-231 (271)
221 cd03247 ABCC_cytochrome_bd The 100.0 4E-34 8.6E-39 306.0 21.0 165 591-801 1-178 (178)
222 PRK11300 livG leucine/isoleuci 100.0 5.7E-34 1.2E-38 322.7 23.4 199 590-808 5-243 (255)
223 PRK13548 hmuV hemin importer A 100.0 8.2E-34 1.8E-38 321.5 24.5 198 591-808 3-230 (258)
224 PRK14247 phosphate ABC transpo 100.0 8.2E-34 1.8E-38 320.4 24.2 203 590-809 3-235 (250)
225 PRK13642 cbiO cobalt transport 100.0 6.4E-34 1.4E-38 325.6 23.4 202 590-808 4-229 (277)
226 TIGR02673 FtsE cell division A 100.0 3.2E-34 7E-39 316.1 20.2 187 591-796 2-214 (214)
227 TIGR03410 urea_trans_UrtE urea 100.0 3.8E-34 8.2E-39 319.1 21.0 198 591-807 1-220 (230)
228 TIGR03522 GldA_ABC_ATP gliding 100.0 4.6E-34 1E-38 330.3 22.4 197 591-808 3-221 (301)
229 PRK11614 livF leucine/isoleuci 100.0 7.4E-34 1.6E-38 318.2 23.4 204 590-808 5-226 (237)
230 cd03257 ABC_NikE_OppD_transpor 100.0 3.9E-34 8.4E-39 318.6 20.9 196 591-801 2-228 (228)
231 PRK11124 artP arginine transpo 100.0 8.6E-34 1.9E-38 318.7 23.7 198 590-808 2-230 (242)
232 PRK14249 phosphate ABC transpo 100.0 1.1E-33 2.4E-38 319.4 24.8 202 590-808 4-235 (251)
233 COG0410 LivF ABC-type branched 100.0 7.9E-34 1.7E-38 299.9 21.8 206 590-809 3-227 (237)
234 PRK10253 iron-enterobactin tra 100.0 7.8E-34 1.7E-38 323.0 23.6 201 588-808 5-233 (265)
235 PRK10895 lipopolysaccharide AB 100.0 7.6E-34 1.6E-38 318.9 23.2 198 590-808 3-226 (241)
236 PRK14240 phosphate transporter 100.0 1.1E-33 2.3E-38 319.5 24.5 202 590-808 3-234 (250)
237 TIGR03005 ectoine_ehuA ectoine 100.0 8E-34 1.7E-38 320.9 23.4 199 591-809 1-237 (252)
238 TIGR01188 drrA daunorubicin re 100.0 3.6E-34 7.8E-39 331.6 21.0 186 611-808 6-213 (302)
239 PRK10575 iron-hydroxamate tran 100.0 7.2E-34 1.6E-38 323.3 23.0 201 588-808 9-237 (265)
240 TIGR03411 urea_trans_UrtD urea 100.0 7.6E-34 1.6E-38 319.2 22.9 197 591-808 3-231 (242)
241 PRK10584 putative ABC transpor 100.0 8.8E-34 1.9E-38 315.7 23.3 195 589-800 5-227 (228)
242 PRK13638 cbiO cobalt transport 100.0 7.1E-34 1.5E-38 324.5 22.9 198 591-808 2-225 (271)
243 cd03292 ABC_FtsE_transporter F 100.0 4.5E-34 9.7E-39 315.0 20.6 188 591-797 1-214 (214)
244 TIGR02769 nickel_nikE nickel i 100.0 1.2E-33 2.6E-38 321.6 24.7 208 590-808 2-240 (265)
245 cd03225 ABC_cobalt_CbiO_domain 100.0 4.5E-34 9.7E-39 314.3 20.4 186 593-796 2-211 (211)
246 PRK14267 phosphate ABC transpo 100.0 9E-34 2E-38 320.7 23.4 202 590-808 4-237 (253)
247 PRK13633 cobalt transporter AT 100.0 9.1E-34 2E-38 324.8 23.6 204 590-808 4-233 (280)
248 PRK14243 phosphate transporter 100.0 1.3E-33 2.7E-38 321.1 24.5 203 589-808 9-248 (264)
249 PRK13648 cbiO cobalt transport 100.0 9.7E-34 2.1E-38 323.0 23.5 201 590-808 7-231 (269)
250 PRK13652 cbiO cobalt transport 100.0 9.1E-34 2E-38 324.3 23.2 200 590-808 3-227 (277)
251 PRK13639 cbiO cobalt transport 100.0 7E-34 1.5E-38 324.9 22.2 199 591-808 2-226 (275)
252 PRK14237 phosphate transporter 100.0 1.6E-33 3.5E-38 320.7 24.7 203 589-808 19-251 (267)
253 PRK10247 putative ABC transpor 100.0 7.9E-34 1.7E-38 315.2 21.7 198 588-804 5-223 (225)
254 PRK14238 phosphate transporter 100.0 1.3E-33 2.8E-38 322.1 23.9 204 589-809 23-256 (271)
255 TIGR03873 F420-0_ABC_ATP propo 100.0 8.8E-34 1.9E-38 321.2 22.4 198 591-808 2-226 (256)
256 cd03223 ABCD_peroxisomal_ALDP 100.0 8.8E-34 1.9E-38 299.4 20.6 160 591-795 1-163 (166)
257 PRK09984 phosphonate/organopho 100.0 1.4E-33 3E-38 320.7 23.5 197 590-806 4-240 (262)
258 TIGR03740 galliderm_ABC gallid 100.0 1.1E-33 2.3E-38 313.9 22.1 195 591-805 1-210 (223)
259 PRK14256 phosphate ABC transpo 100.0 1.9E-33 4.2E-38 317.7 24.4 204 589-809 3-237 (252)
260 PRK14253 phosphate ABC transpo 100.0 1.6E-33 3.4E-38 318.0 23.5 202 590-808 3-233 (249)
261 PRK10771 thiQ thiamine transpo 100.0 2.4E-33 5.2E-38 313.0 24.7 196 591-808 2-219 (232)
262 PRK10908 cell division protein 100.0 1.2E-33 2.6E-38 313.4 21.8 190 591-799 2-217 (222)
263 cd03246 ABCC_Protease_Secretio 100.0 8.3E-34 1.8E-38 302.0 19.7 159 591-797 1-173 (173)
264 PRK14262 phosphate ABC transpo 100.0 1.6E-33 3.4E-38 318.1 23.1 202 590-808 3-234 (250)
265 cd03262 ABC_HisP_GlnQ_permease 100.0 8.6E-34 1.9E-38 312.5 20.4 187 591-797 1-213 (213)
266 PRK11248 tauB taurine transpor 100.0 1.4E-33 3E-38 318.7 22.5 193 591-803 2-215 (255)
267 PRK14261 phosphate ABC transpo 100.0 1.8E-33 3.9E-38 318.2 23.4 202 590-808 6-237 (253)
268 PRK11308 dppF dipeptide transp 100.0 2.5E-33 5.3E-38 326.5 25.1 217 589-816 4-252 (327)
269 PRK14236 phosphate transporter 100.0 2.5E-33 5.4E-38 320.0 24.7 204 588-808 23-256 (272)
270 PRK14254 phosphate ABC transpo 100.0 2.7E-33 5.9E-38 321.2 24.9 204 588-808 37-269 (285)
271 PRK11144 modC molybdate transp 100.0 1.6E-33 3.4E-38 331.9 23.6 198 591-811 2-221 (352)
272 TIGR01978 sufC FeS assembly AT 100.0 1.5E-33 3.3E-38 317.0 22.3 198 591-807 1-233 (243)
273 PRK14244 phosphate ABC transpo 100.0 1.6E-33 3.4E-38 318.2 22.2 202 591-809 6-238 (251)
274 PRK14275 phosphate ABC transpo 100.0 2.2E-33 4.9E-38 322.2 23.6 205 588-809 37-271 (286)
275 PRK14252 phosphate ABC transpo 100.0 3.2E-33 7E-38 318.1 24.6 204 588-808 14-249 (265)
276 COG1137 YhbG ABC-type (unclass 100.0 1E-34 2.2E-39 296.8 10.7 204 591-809 5-229 (243)
277 PRK11022 dppD dipeptide transp 100.0 2.5E-33 5.5E-38 326.5 23.8 213 590-815 3-250 (326)
278 cd03300 ABC_PotA_N PotA is an 100.0 2.6E-33 5.7E-38 312.6 22.8 198 591-808 1-220 (232)
279 PRK14271 phosphate ABC transpo 100.0 2.3E-33 5E-38 320.5 22.4 204 589-809 20-252 (276)
280 PRK09544 znuC high-affinity zi 100.0 3.1E-33 6.8E-38 314.8 23.1 198 590-808 4-209 (251)
281 PRK11701 phnK phosphonate C-P 100.0 4.3E-33 9.3E-38 315.9 24.1 203 590-808 6-241 (258)
282 PRK14264 phosphate ABC transpo 100.0 5.4E-33 1.2E-37 321.8 24.9 203 589-808 44-289 (305)
283 PRK14272 phosphate ABC transpo 100.0 5.2E-33 1.1E-37 314.3 24.1 203 590-809 4-237 (252)
284 PRK14266 phosphate ABC transpo 100.0 3.9E-33 8.5E-38 314.9 23.1 202 590-808 3-234 (250)
285 TIGR01277 thiQ thiamine ABC tr 100.0 3.8E-33 8.2E-38 307.3 22.3 189 592-802 2-212 (213)
286 PRK15112 antimicrobial peptide 100.0 4.9E-33 1.1E-37 316.7 23.9 209 590-809 4-240 (267)
287 PRK15093 antimicrobial peptide 100.0 4.5E-33 9.7E-38 325.5 23.9 214 590-816 3-256 (330)
288 PRK14260 phosphate ABC transpo 100.0 5.3E-33 1.1E-37 315.3 23.7 202 590-808 7-243 (259)
289 TIGR00968 3a0106s01 sulfate AB 100.0 5.2E-33 1.1E-37 311.1 23.3 198 591-808 1-220 (237)
290 PRK14265 phosphate ABC transpo 100.0 8.2E-33 1.8E-37 315.8 25.3 203 589-808 19-258 (274)
291 PRK14255 phosphate ABC transpo 100.0 6.1E-33 1.3E-37 313.7 23.7 202 590-808 5-236 (252)
292 PRK10418 nikD nickel transport 100.0 9.2E-33 2E-37 312.4 25.0 202 590-809 4-231 (254)
293 PRK09473 oppD oligopeptide tra 100.0 3.1E-33 6.7E-38 326.0 21.7 216 589-817 11-260 (330)
294 cd03299 ABC_ModC_like Archeal 100.0 5.9E-33 1.3E-37 310.3 22.7 197 591-808 1-219 (235)
295 PRK15056 manganese/iron transp 100.0 5.2E-33 1.1E-37 317.4 22.6 199 590-808 6-230 (272)
296 COG4178 ABC-type uncharacteriz 100.0 1.5E-29 3.2E-34 304.0 52.9 433 339-793 107-587 (604)
297 PRK14241 phosphate transporter 100.0 7E-33 1.5E-37 314.2 23.1 202 590-808 4-242 (258)
298 PRK14263 phosphate ABC transpo 100.0 1.1E-32 2.3E-37 312.7 24.4 203 589-808 7-245 (261)
299 PRK13546 teichoic acids export 100.0 1.6E-32 3.4E-37 310.7 24.8 208 589-808 3-232 (264)
300 PRK13547 hmuV hemin importer A 100.0 1.1E-32 2.3E-37 313.8 23.2 198 591-808 2-244 (272)
301 PRK14258 phosphate ABC transpo 100.0 1.6E-32 3.4E-37 311.7 24.5 204 590-809 7-246 (261)
302 TIGR02142 modC_ABC molybdenum 100.0 6.6E-33 1.4E-37 327.2 22.1 195 595-811 4-224 (354)
303 PRK10419 nikE nickel transport 100.0 1.5E-32 3.2E-37 312.8 23.3 208 590-808 3-241 (268)
304 cd03230 ABC_DR_subfamily_A Thi 100.0 9.1E-33 2E-37 294.0 20.1 158 591-797 1-173 (173)
305 COG4559 ABC-type hemin transpo 100.0 7.8E-33 1.7E-37 285.5 18.7 202 591-808 2-230 (259)
306 TIGR02323 CP_lyasePhnK phospho 100.0 2.1E-32 4.5E-37 309.6 23.9 203 590-808 3-238 (253)
307 PRK14246 phosphate ABC transpo 100.0 1.7E-32 3.7E-37 310.2 22.6 206 588-810 8-243 (257)
308 cd03234 ABCG_White The White s 100.0 8.7E-33 1.9E-37 307.2 19.8 200 590-801 3-226 (226)
309 TIGR02770 nickel_nikD nickel i 100.0 1.8E-32 4E-37 305.4 22.3 187 614-809 2-216 (230)
310 cd03297 ABC_ModC_molybdenum_tr 100.0 1.5E-32 3.2E-37 302.9 21.2 184 595-801 5-214 (214)
311 cd03213 ABCG_EPDR ABCG transpo 100.0 1.3E-32 2.8E-37 298.2 20.4 176 590-801 3-194 (194)
312 COG4618 ArpD ABC-type protease 100.0 2.3E-30 5E-35 297.0 39.5 387 935-1331 71-459 (580)
313 TIGR01184 ntrCD nitrate transp 100.0 8.9E-33 1.9E-37 307.8 19.1 181 614-806 1-202 (230)
314 TIGR02982 heterocyst_DevA ABC 100.0 1.7E-32 3.7E-37 303.6 21.3 191 591-797 2-219 (220)
315 COG4525 TauB ABC-type taurine 100.0 1.4E-32 2.9E-37 279.4 17.1 194 592-803 5-219 (259)
316 cd03233 ABC_PDR_domain1 The pl 100.0 2.9E-32 6.2E-37 297.4 20.9 180 590-801 3-202 (202)
317 cd03228 ABCC_MRP_Like The MRP 100.0 2.3E-32 5E-37 290.3 19.6 157 591-796 1-171 (171)
318 cd03232 ABC_PDR_domain2 The pl 100.0 2.5E-32 5.5E-37 295.6 20.0 174 590-801 3-192 (192)
319 cd03229 ABC_Class3 This class 100.0 2.6E-32 5.6E-37 291.9 19.5 159 591-796 1-178 (178)
320 PRK13545 tagH teichoic acids e 100.0 6.9E-32 1.5E-36 321.6 25.0 203 589-808 20-232 (549)
321 COG4181 Predicted ABC-type tra 100.0 1.5E-32 3.2E-37 273.6 16.0 194 590-799 6-226 (228)
322 COG1123 ATPase components of v 100.0 5.2E-32 1.1E-36 321.4 23.4 220 588-818 278-529 (539)
323 TIGR03608 L_ocin_972_ABC putat 100.0 2.7E-32 5.9E-37 299.0 19.0 180 593-792 1-206 (206)
324 PRK10261 glutathione transport 100.0 5.5E-32 1.2E-36 342.1 24.3 215 589-814 312-559 (623)
325 COG0411 LivG ABC-type branched 100.0 1.8E-32 4E-37 291.7 15.9 205 591-810 5-241 (250)
326 cd03215 ABC_Carb_Monos_II This 100.0 5.1E-32 1.1E-36 290.7 19.1 159 590-797 4-182 (182)
327 CHL00131 ycf16 sulfate ABC tra 100.0 1.5E-31 3.3E-36 302.4 23.9 197 590-805 7-238 (252)
328 cd03267 ABC_NatA_like Similar 100.0 7.2E-32 1.6E-36 301.7 20.5 179 611-801 34-236 (236)
329 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 7.3E-32 1.6E-36 299.1 20.2 179 611-801 35-224 (224)
330 cd03217 ABC_FeS_Assembly ABC-t 100.0 1.5E-31 3.2E-36 291.4 21.5 171 591-806 1-191 (200)
331 cd03237 ABC_RNaseL_inhibitor_d 100.0 1.3E-31 2.9E-36 300.3 21.1 183 613-807 9-206 (246)
332 TIGR03771 anch_rpt_ABC anchore 100.0 1.1E-31 2.4E-36 297.5 20.1 178 618-808 1-201 (223)
333 PRK03695 vitamin B12-transport 100.0 2E-31 4.4E-36 300.2 22.4 183 613-808 11-222 (248)
334 PRK13543 cytochrome c biogenes 100.0 2E-31 4.3E-36 293.7 21.9 186 589-794 10-212 (214)
335 COG0444 DppD ABC-type dipeptid 100.0 2.3E-31 5E-36 295.6 22.1 215 591-818 2-253 (316)
336 COG4598 HisP ABC-type histidin 100.0 6.1E-32 1.3E-36 270.7 15.2 204 589-812 5-245 (256)
337 PRK15134 microcin C ABC transp 100.0 1.8E-31 4E-36 332.7 23.0 207 590-808 275-515 (529)
338 COG4604 CeuD ABC-type enteroch 100.0 1.9E-32 4.1E-37 279.1 11.5 198 591-808 2-225 (252)
339 PRK13538 cytochrome c biogenes 100.0 2.4E-31 5.3E-36 290.8 21.0 182 591-792 2-202 (204)
340 PRK09580 sufC cysteine desulfu 100.0 4.3E-31 9.2E-36 298.0 23.4 196 591-806 2-233 (248)
341 PRK13549 xylose transporter AT 100.0 1.2E-31 2.5E-36 332.7 20.1 201 590-806 259-492 (506)
342 TIGR00955 3a01204 The Eye Pigm 100.0 5.2E-30 1.1E-34 323.7 35.0 197 610-808 37-256 (617)
343 cd03231 ABC_CcmA_heme_exporter 100.0 3.9E-31 8.4E-36 288.5 21.4 182 591-792 1-198 (201)
344 PRK13540 cytochrome c biogenes 100.0 3.4E-31 7.3E-36 288.8 20.0 181 591-791 2-198 (200)
345 cd03214 ABC_Iron-Siderophores_ 100.0 2.1E-31 4.5E-36 285.5 17.8 176 592-801 1-180 (180)
346 TIGR01257 rim_protein retinal- 100.0 7.3E-30 1.6E-34 343.5 36.6 203 588-808 1935-2159(2272)
347 COG4161 ArtP ABC-type arginine 100.0 1.5E-31 3.4E-36 263.1 15.0 199 590-808 2-230 (242)
348 cd03216 ABC_Carb_Monos_I This 100.0 4.2E-31 9E-36 278.2 19.4 160 591-799 1-162 (163)
349 TIGR03269 met_CoM_red_A2 methy 100.0 4E-31 8.6E-36 329.2 22.6 210 589-808 278-517 (520)
350 PRK13539 cytochrome c biogenes 100.0 8.6E-31 1.9E-35 287.1 20.6 183 591-794 3-200 (207)
351 TIGR02324 CP_lyasePhnL phospho 100.0 7.6E-31 1.6E-35 291.4 20.4 190 591-792 2-222 (224)
352 COG4619 ABC-type uncharacteriz 100.0 1.9E-31 4.1E-36 264.9 13.3 177 610-797 15-212 (223)
353 PRK15064 ABC transporter ATP-b 100.0 1.6E-30 3.4E-35 324.4 24.3 198 589-808 318-525 (530)
354 COG4148 ModC ABC-type molybdat 100.0 3.2E-31 7E-36 283.3 15.0 179 617-808 18-218 (352)
355 KOG0927 Predicted transporter 100.0 2.9E-30 6.2E-35 297.9 23.3 204 588-808 73-309 (614)
356 PRK13541 cytochrome c biogenes 100.0 1.1E-30 2.3E-35 283.7 18.8 178 591-789 2-192 (195)
357 TIGR01187 potA spermidine/putr 100.0 1E-30 2.2E-35 305.0 19.4 172 628-811 1-193 (325)
358 PRK09700 D-allose transporter 100.0 9.7E-31 2.1E-35 325.0 20.2 196 590-803 265-493 (510)
359 TIGR02633 xylG D-xylose ABC tr 100.0 9.5E-31 2.1E-35 324.5 19.8 200 590-805 257-489 (500)
360 PRK15177 Vi polysaccharide exp 100.0 1.1E-30 2.5E-35 287.0 18.0 185 613-808 2-192 (213)
361 COG4152 ABC-type uncharacteriz 100.0 5.1E-31 1.1E-35 277.3 14.1 203 590-808 2-219 (300)
362 TIGR01166 cbiO cobalt transpor 100.0 1.2E-30 2.5E-35 282.3 17.4 160 611-782 5-189 (190)
363 TIGR01189 ccmA heme ABC export 100.0 2.2E-30 4.8E-35 282.0 19.3 179 591-790 1-196 (198)
364 PLN03211 ABC transporter G-25; 100.0 2.9E-30 6.4E-35 325.6 21.8 191 610-808 80-296 (659)
365 PRK11288 araG L-arabinose tran 100.0 2.1E-30 4.5E-35 321.2 20.0 195 590-807 257-484 (501)
366 KOG0060 Long-chain acyl-CoA tr 100.0 5.2E-27 1.1E-31 272.8 46.2 442 331-794 135-641 (659)
367 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 1.2E-29 2.6E-34 317.6 24.9 198 589-808 321-531 (552)
368 cd03221 ABCF_EF-3 ABCF_EF-3 E 100.0 6.4E-30 1.4E-34 263.3 17.9 140 591-796 1-144 (144)
369 PRK10762 D-ribose transporter 100.0 3.5E-30 7.6E-35 319.1 19.0 194 590-807 257-483 (501)
370 PRK11819 putative ABC transpor 100.0 1.7E-29 3.7E-34 316.2 25.2 198 589-808 323-533 (556)
371 PRK10636 putative ABC transpor 100.0 1.7E-29 3.7E-34 319.6 24.5 199 588-808 310-517 (638)
372 COG4608 AppF ABC-type oligopep 100.0 9.2E-30 2E-34 277.3 18.9 201 590-818 4-209 (268)
373 PRK15439 autoinducer 2 ABC tra 100.0 5.1E-30 1.1E-34 317.9 18.7 195 590-808 268-492 (510)
374 PRK13409 putative ATPase RIL; 100.0 1.5E-29 3.2E-34 315.5 21.5 192 589-802 339-536 (590)
375 cd03222 ABC_RNaseL_inhibitor T 100.0 1.8E-29 3.8E-34 267.5 18.5 151 594-804 4-159 (177)
376 COG4172 ABC-type uncharacteriz 100.0 5.2E-29 1.1E-33 277.6 23.0 217 588-817 274-525 (534)
377 PLN03073 ABC transporter F fam 100.0 3.3E-29 7.1E-34 317.6 24.2 197 589-807 507-713 (718)
378 PRK11147 ABC transporter ATPas 100.0 3.8E-29 8.3E-34 317.2 24.3 199 588-808 317-528 (635)
379 PRK10535 macrolide transporter 100.0 4.9E-29 1.1E-33 316.3 23.1 201 590-807 4-231 (648)
380 PRK10938 putative molybdenum t 100.0 2.8E-29 6.1E-34 310.6 18.8 193 589-800 259-484 (490)
381 PRK10982 galactose/methyl gala 100.0 4.5E-29 9.8E-34 308.7 20.3 201 589-806 249-478 (491)
382 COG1119 ModF ABC-type molybden 100.0 2.3E-29 5E-34 267.9 15.1 199 587-802 28-256 (257)
383 cd03236 ABC_RNaseL_inhibitor_d 100.0 5.5E-29 1.2E-33 280.2 18.1 186 595-800 5-219 (255)
384 COG1134 TagH ABC-type polysacc 100.0 1.1E-28 2.3E-33 263.5 18.0 187 610-808 39-236 (249)
385 cd03238 ABC_UvrA The excision 100.0 1.4E-28 3.1E-33 260.3 18.5 150 610-798 7-167 (176)
386 COG1101 PhnK ABC-type uncharac 100.0 5.7E-29 1.2E-33 257.5 14.8 187 609-801 17-231 (263)
387 TIGR00956 3a01205 Pleiotropic 100.0 1.5E-28 3.3E-33 332.4 22.2 204 590-805 759-990 (1394)
388 COG4615 PvdE ABC-type sideroph 100.0 2.4E-25 5.2E-30 247.4 39.9 366 940-1325 61-435 (546)
389 cd00267 ABC_ATPase ABC (ATP-bi 100.0 2E-27 4.3E-32 249.0 18.1 141 593-796 2-157 (157)
390 PLN03140 ABC transporter G fam 99.9 6.2E-27 1.3E-31 315.3 23.3 208 590-805 867-1107(1470)
391 COG4136 ABC-type uncharacteriz 99.9 3.2E-27 7E-32 230.4 13.8 182 591-792 3-207 (213)
392 COG4674 Uncharacterized ABC-ty 99.9 4.6E-27 1E-31 239.5 13.6 200 589-809 4-236 (249)
393 COG4167 SapF ABC-type antimicr 99.9 1.6E-26 3.5E-31 232.4 17.1 192 614-816 29-247 (267)
394 COG0488 Uup ATPase components 99.9 1.2E-25 2.5E-30 273.3 26.0 200 587-808 318-525 (530)
395 cd03270 ABC_UvrA_I The excisio 99.9 7.4E-26 1.6E-30 251.1 18.8 179 610-801 7-226 (226)
396 COG4107 PhnK ABC-type phosphon 99.9 9.8E-26 2.1E-30 225.0 15.6 217 590-818 6-251 (258)
397 KOG0062 ATPase component of AB 99.9 2.5E-25 5.5E-30 255.9 20.8 196 588-808 78-285 (582)
398 COG4586 ABC-type uncharacteriz 99.9 1.5E-25 3.3E-30 239.9 15.1 188 611-808 37-246 (325)
399 KOG0065 Pleiotropic drug resis 99.9 2.4E-23 5.1E-28 263.0 36.0 197 611-808 128-351 (1391)
400 KOG0061 Transporter, ABC super 99.9 3.4E-25 7.4E-30 276.9 18.5 209 589-808 24-260 (613)
401 COG0396 sufC Cysteine desulfur 99.9 3.8E-24 8.2E-29 225.4 21.1 199 591-808 4-233 (251)
402 cd03271 ABC_UvrA_II The excisi 99.9 1.3E-24 2.8E-29 243.5 17.7 181 612-803 9-261 (261)
403 cd03289 ABCC_CFTR2 The CFTR su 99.9 3E-25 6.6E-30 252.3 12.2 123 1206-1329 1-123 (275)
404 PRK14257 phosphate ABC transpo 99.9 1.3E-24 2.8E-29 253.4 14.7 155 1171-1325 35-213 (329)
405 COG4133 CcmA ABC-type transpor 99.9 2.3E-24 5E-29 220.1 11.9 162 610-784 14-194 (209)
406 PRK00635 excinuclease ABC subu 99.9 2.7E-23 5.9E-28 276.3 25.3 94 714-807 803-905 (1809)
407 PF00005 ABC_tran: ABC transpo 99.9 1.6E-24 3.4E-29 221.5 10.0 122 614-749 1-137 (137)
408 cd03278 ABC_SMC_barmotin Barmo 99.9 9.2E-24 2E-28 229.0 14.6 151 617-793 17-189 (197)
409 KOG0064 Peroxisomal long-chain 99.9 1.8E-19 3.8E-24 207.0 48.2 458 317-792 157-681 (728)
410 KOG0059 Lipid exporter ABCA1 a 99.9 2.2E-23 4.8E-28 271.6 16.1 201 589-808 563-787 (885)
411 COG4178 ABC-type uncharacteriz 99.9 1.1E-19 2.4E-24 219.2 41.4 382 928-1327 87-503 (604)
412 KOG0927 Predicted transporter 99.9 6.1E-23 1.3E-27 237.6 11.3 201 588-808 387-596 (614)
413 cd03240 ABC_Rad50 The catalyti 99.9 3.4E-22 7.3E-27 218.1 14.8 154 617-794 17-197 (204)
414 COG4778 PhnL ABC-type phosphon 99.9 1.5E-22 3.2E-27 202.0 9.7 173 611-794 24-227 (235)
415 KOG0066 eIF2-interacting prote 99.9 9.6E-22 2.1E-26 219.6 11.1 202 590-807 264-498 (807)
416 cd03279 ABC_sbcCD SbcCD and ot 99.9 2.3E-21 4.9E-26 213.5 13.9 160 622-797 27-211 (213)
417 cd03272 ABC_SMC3_euk Eukaryoti 99.9 2.3E-21 5E-26 218.1 13.3 79 714-793 152-234 (243)
418 cd03273 ABC_SMC2_euk Eukaryoti 99.9 3.6E-21 7.8E-26 217.5 14.0 172 623-796 25-247 (251)
419 PRK00349 uvrA excinuclease ABC 99.9 1.3E-20 2.9E-25 242.3 21.0 98 714-811 824-930 (943)
420 COG1129 MglA ABC-type sugar tr 99.8 1E-20 2.2E-25 224.1 17.1 186 613-805 274-487 (500)
421 cd03369 ABCC_NFT1 Domain 2 of 99.8 5.8E-21 1.3E-25 209.5 13.5 118 1202-1319 1-118 (207)
422 COG4138 BtuD ABC-type cobalami 99.8 9.7E-22 2.1E-26 196.9 6.3 183 614-808 15-221 (248)
423 cd03275 ABC_SMC1_euk Eukaryoti 99.8 4.2E-21 9.1E-26 216.2 11.9 167 625-793 24-232 (247)
424 COG1245 Predicted ATPase, RNas 99.8 2.4E-20 5.2E-25 211.6 16.7 183 595-793 340-530 (591)
425 cd03244 ABCC_MRP_domain2 Domai 99.8 1.4E-20 3E-25 208.8 12.9 122 1206-1327 1-122 (221)
426 COG2884 FtsE Predicted ATPase 99.8 4E-21 8.7E-26 196.3 7.4 123 1208-1331 2-135 (223)
427 PF00664 ABC_membrane: ABC tra 99.8 7.5E-18 1.6E-22 190.0 33.4 220 939-1158 53-274 (275)
428 cd03288 ABCC_SUR2 The SUR doma 99.8 3.8E-20 8.3E-25 209.9 13.1 122 1204-1325 16-137 (257)
429 KOG0065 Pleiotropic drug resis 99.8 1.9E-20 4.1E-25 237.0 11.5 188 610-805 803-1018(1391)
430 TIGR00630 uvra excinuclease AB 99.8 1.6E-19 3.4E-24 232.1 19.1 93 714-806 822-923 (924)
431 COG1117 PstB ABC-type phosphat 99.8 2E-20 4.3E-25 194.5 8.4 123 1206-1330 6-142 (253)
432 cd03274 ABC_SMC4_euk Eukaryoti 99.8 2.8E-20 6E-25 204.1 9.8 161 624-794 26-204 (212)
433 COG1126 GlnQ ABC-type polar am 99.8 3.7E-20 8.1E-25 193.7 9.9 123 1207-1331 2-134 (240)
434 COG1125 OpuBA ABC-type proline 99.8 2.9E-20 6.3E-25 197.8 9.1 119 1208-1328 2-128 (309)
435 PF00664 ABC_membrane: ABC tra 99.8 1.7E-16 3.8E-21 178.8 39.3 268 278-546 2-275 (275)
436 COG3638 ABC-type phosphate/pho 99.8 6.5E-20 1.4E-24 194.3 9.8 122 1207-1329 3-143 (258)
437 COG1135 AbcC ABC-type metal io 99.8 1.5E-19 3.3E-24 198.3 12.6 122 1208-1329 2-137 (339)
438 cd03276 ABC_SMC6_euk Eukaryoti 99.8 3.9E-19 8.5E-24 193.0 14.9 158 617-796 16-192 (198)
439 KOG0062 ATPase component of AB 99.8 2.9E-19 6.3E-24 206.3 14.4 196 588-806 360-567 (582)
440 KOG0066 eIF2-interacting prote 99.8 5.1E-19 1.1E-23 198.0 14.7 197 589-808 585-791 (807)
441 cd03239 ABC_SMC_head The struc 99.8 4E-19 8.7E-24 189.4 12.2 142 624-794 23-172 (178)
442 TIGR00960 3a0501s02 Type II (G 99.8 2.8E-19 6E-24 197.6 10.9 120 1208-1327 2-132 (216)
443 cd03252 ABCC_Hemolysin The ABC 99.8 3.8E-19 8.3E-24 199.4 11.6 118 1208-1325 1-119 (237)
444 cd03254 ABCC_Glucan_exporter_l 99.8 5.9E-19 1.3E-23 196.8 12.2 119 1206-1325 1-120 (229)
445 PRK13647 cbiO cobalt transport 99.8 3.8E-19 8.3E-24 203.4 10.9 119 1207-1326 4-131 (274)
446 PRK13650 cbiO cobalt transport 99.8 5E-19 1.1E-23 203.0 11.3 121 1207-1327 4-134 (279)
447 COG1127 Ttg2A ABC-type transpo 99.8 4.9E-19 1.1E-23 188.2 10.2 119 1206-1326 7-137 (263)
448 COG1122 CbiO ABC-type cobalt t 99.8 9.8E-19 2.1E-23 192.8 12.6 123 1207-1330 3-135 (235)
449 PRK14250 phosphate ABC transpo 99.8 1E-18 2.2E-23 196.3 12.3 116 1207-1324 3-121 (241)
450 PRK13631 cbiO cobalt transport 99.8 1.1E-18 2.4E-23 203.2 12.6 119 1206-1324 20-166 (320)
451 cd03260 ABC_PstB_phosphate_tra 99.8 7.3E-19 1.6E-23 195.8 10.3 117 1208-1326 1-132 (227)
452 KOG2355 Predicted ABC-type tra 99.8 4.4E-18 9.4E-23 175.0 14.9 199 587-807 10-236 (291)
453 cd03250 ABCC_MRP_domain1 Domai 99.8 9E-19 2E-23 191.7 10.5 106 1208-1326 1-109 (204)
454 PRK14269 phosphate ABC transpo 99.8 9E-19 1.9E-23 197.4 10.8 116 1207-1324 2-129 (246)
455 cd03245 ABCC_bacteriocin_expor 99.8 1.8E-18 3.8E-23 191.8 12.8 121 1206-1326 1-122 (220)
456 PRK13637 cbiO cobalt transport 99.8 1.1E-18 2.3E-23 201.0 11.3 117 1208-1324 3-133 (287)
457 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.8 9.6E-19 2.1E-23 193.6 10.5 119 1208-1326 1-133 (218)
458 TIGR02314 ABC_MetN D-methionin 99.8 1.2E-18 2.7E-23 203.7 11.8 120 1208-1327 2-134 (343)
459 PRK11629 lolD lipoprotein tran 99.8 1.1E-18 2.4E-23 195.1 10.8 120 1207-1326 5-138 (233)
460 cd03263 ABC_subfamily_A The AB 99.8 8.5E-19 1.8E-23 194.3 9.8 118 1208-1326 1-126 (220)
461 cd03246 ABCC_Protease_Secretio 99.8 1.5E-18 3.2E-23 184.9 11.1 96 1208-1303 1-96 (173)
462 cd03253 ABCC_ATM1_transporter 99.8 1.6E-18 3.5E-23 194.1 11.9 118 1208-1326 1-119 (236)
463 cd03248 ABCC_TAP TAP, the Tran 99.8 1.7E-18 3.7E-23 192.7 11.8 102 1204-1305 8-110 (226)
464 TIGR02673 FtsE cell division A 99.8 1E-18 2.2E-23 192.8 9.9 118 1208-1326 2-130 (214)
465 PRK13635 cbiO cobalt transport 99.8 1.5E-18 3.3E-23 198.9 11.6 120 1207-1326 5-133 (279)
466 COG1120 FepC ABC-type cobalami 99.8 1.3E-18 2.8E-23 191.8 10.4 118 1207-1326 2-131 (258)
467 PRK13646 cbiO cobalt transport 99.8 1.5E-18 3.2E-23 199.8 11.4 118 1207-1324 2-135 (286)
468 cd03261 ABC_Org_Solvent_Resist 99.8 1.6E-18 3.5E-23 194.1 11.3 117 1208-1326 1-129 (235)
469 PRK10247 putative ABC transpor 99.8 2.3E-18 5.1E-23 191.4 12.5 117 1207-1325 7-128 (225)
470 cd03266 ABC_NatA_sodium_export 99.8 1.8E-18 3.8E-23 191.5 11.3 118 1208-1326 2-129 (218)
471 cd03251 ABCC_MsbA MsbA is an e 99.8 2.4E-18 5.1E-23 192.6 12.4 117 1208-1324 1-118 (234)
472 cd03292 ABC_FtsE_transporter F 99.8 1.1E-18 2.4E-23 192.5 9.5 118 1208-1326 1-129 (214)
473 cd03226 ABC_cobalt_CbiO_domain 99.8 2.1E-18 4.6E-23 189.0 11.1 115 1209-1327 1-120 (205)
474 PRK13632 cbiO cobalt transport 99.8 2.7E-18 5.8E-23 196.3 12.3 120 1207-1326 7-135 (271)
475 cd03256 ABC_PhnC_transporter A 99.8 2.1E-18 4.6E-23 193.8 11.2 118 1208-1326 1-137 (241)
476 cd03247 ABCC_cytochrome_bd The 99.8 2.4E-18 5.2E-23 184.2 11.0 95 1208-1303 1-95 (178)
477 COG3839 MalK ABC-type sugar tr 99.8 3E-18 6.5E-23 195.9 12.0 116 1207-1326 3-126 (338)
478 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.8 2.4E-18 5.2E-23 193.1 10.9 118 1208-1325 1-120 (238)
479 PRK13643 cbiO cobalt transport 99.8 2.7E-18 5.8E-23 197.8 11.4 117 1208-1324 2-134 (288)
480 cd03280 ABC_MutS2 MutS2 homolo 99.7 2.9E-18 6.4E-23 187.0 11.1 141 617-800 21-171 (200)
481 PRK14259 phosphate ABC transpo 99.7 4E-18 8.7E-23 194.5 12.7 118 1205-1324 11-141 (269)
482 PRK10744 pstB phosphate transp 99.7 3.6E-18 7.8E-23 194.1 12.2 118 1205-1324 11-143 (260)
483 cd03268 ABC_BcrA_bacitracin_re 99.7 2.2E-18 4.8E-23 189.2 10.2 115 1208-1326 1-119 (208)
484 TIGR02315 ABC_phnC phosphonate 99.7 2.8E-18 6.1E-23 193.1 11.1 117 1208-1325 2-137 (243)
485 cd03225 ABC_cobalt_CbiO_domain 99.7 2.2E-18 4.8E-23 189.7 10.1 118 1209-1326 1-127 (211)
486 PRK13636 cbiO cobalt transport 99.7 2.9E-18 6.3E-23 197.1 11.4 119 1207-1326 5-134 (283)
487 PRK10908 cell division protein 99.7 4.5E-18 9.8E-23 188.8 12.6 118 1208-1326 2-130 (222)
488 cd03295 ABC_OpuCA_Osmoprotecti 99.7 2.3E-18 5E-23 193.6 10.3 117 1208-1325 1-125 (242)
489 COG3845 ABC-type uncharacteriz 99.7 2.3E-17 5E-22 191.5 18.6 207 587-805 254-489 (501)
490 PRK13640 cbiO cobalt transport 99.7 5.4E-18 1.2E-22 194.8 13.2 121 1206-1326 4-136 (282)
491 PRK13652 cbiO cobalt transport 99.7 3.9E-18 8.4E-23 195.5 11.9 118 1208-1326 4-130 (277)
492 COG1136 SalX ABC-type antimicr 99.7 7.2E-18 1.6E-22 182.4 13.0 121 1208-1328 2-136 (226)
493 KOG0060 Long-chain acyl-CoA tr 99.7 2.8E-15 6.1E-20 175.7 35.4 247 1070-1327 269-553 (659)
494 cd03258 ABC_MetN_methionine_tr 99.7 3.1E-18 6.6E-23 191.6 10.4 119 1208-1326 2-133 (233)
495 cd03262 ABC_HisP_GlnQ_permease 99.7 3E-18 6.5E-23 188.9 9.8 117 1208-1326 1-128 (213)
496 COG3842 PotA ABC-type spermidi 99.7 5.8E-18 1.2E-22 194.6 12.2 117 1206-1326 4-129 (352)
497 TIGR02211 LolD_lipo_ex lipopro 99.7 6.2E-18 1.3E-22 187.5 12.1 119 1208-1326 2-134 (221)
498 COG1245 Predicted ATPase, RNas 99.7 5.2E-18 1.1E-22 192.8 11.4 160 620-793 97-287 (591)
499 cd03290 ABCC_SUR1_N The SUR do 99.7 5.3E-18 1.1E-22 187.7 11.3 116 1209-1325 2-121 (218)
500 COG1116 TauB ABC-type nitrate/ 99.7 6.2E-18 1.3E-22 182.7 11.4 118 1207-1331 3-128 (248)
No 1
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.2e-238 Score=2253.41 Aligned_cols=1119 Identities=41% Similarity=0.710 Sum_probs=1031.6
Q ss_pred CCCcccCCh--hHHHHHHhHHHHHHhhccCCCCCCCCCCCCCCCcHHHHHHHHHHHHHhhcC---CCCCHHHHHHHHHHH
Q 000720 201 ISTFASAGV--LSKITFHWLNQLFQRGRIQKLELLHIPPIPQSETANDASSLLEESLRKQKT---DATSLPQVIIHAVWK 275 (1333)
Q Consensus 201 ~~p~~~a~~--~s~~~f~Wl~pl~~~g~~~~L~~~dl~~l~~~~~~~~~~~~f~~~w~~~~~---~~~~l~~~l~~~~~~ 275 (1333)
++|.+.++. +|+++|||++|++++|||++|+.+|+|+++++|+++.+.++|+++|+++.+ ++|+++++++++||+
T Consensus 122 ~~~~~~~~~~~~S~~~f~W~~~l~~~g~k~~L~~~Dl~~l~~~d~s~~l~~~~~~~w~~~~~~~~~~psl~~al~~~f~~ 201 (1381)
T KOG0054|consen 122 PNPLPEASAGFLSRLTFSWMTPLLRKGYKKPLELKDLWSLSPEDSSETLVKRLESLWEKELGRSGKKPSLLRALLRTFGR 201 (1381)
T ss_pred CCcccccchhHHHHHHHHHHHHHHHhhccCCCChhhcccCChhhhhhHHHHHHHHHHHHHhccccCCcHHHHHHHHHHHH
Confidence 345555555 999999999999999999999999999999999999999999999999853 358999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 276 SLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSALTV 355 (1333)
Q Consensus 276 ~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~~~~rir~~l~~ 355 (1333)
+++..++++++.+.+.|++|.+|+.+++|+++++. +.+. ||+|+++++++.++++++.+||+|..+++|+|+|+++++
T Consensus 202 ~~~~~~~~~~~~~~~~~~~P~lL~~li~~~~~~~~-~~~~-g~~~a~~lf~~~~l~~l~~~~~~~~~~~~g~r~R~al~~ 279 (1381)
T KOG0054|consen 202 TFLLSGIFLFLRDLAGFVGPLLLKKLILFFSEKRL-PLNN-GYLLAVLLFLASLLQSLLLHQYFFVSFRVGMRLRSALIS 279 (1381)
T ss_pred HHHHHHHHHHHHHHHccccHHHHHHHHHHhcCCCc-ccch-hHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHHH
Confidence 99999999999999999999999999999998743 2455 999999999999999999999999999999999999999
Q ss_pred HHHHHHhccccCCC---ChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 000720 356 LIYKRSMAIKFAGP---SSGIIINMINVDVERIGDFFLYIHRIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFVMVSN 432 (1333)
Q Consensus 356 ~iy~K~L~ls~~~~---~~G~i~nlms~D~~~i~~~~~~~~~~w~~plqi~~~l~lL~~~lG~~a~l~gl~~~~~~~~~~ 432 (1333)
+||+|+|++++.++ +.|+|+|+|++|++|+.++++++|.+|.+|+|+++++++||.++| +++++|++++++++|+|
T Consensus 280 ~IY~K~L~ls~~~~~~~t~G~ivNlms~D~~ri~~~~~~~h~~w~~Plqi~~~l~lLy~~LG-~sa~~G~~~~il~~p~n 358 (1381)
T KOG0054|consen 280 AIYRKALRLSNSARGETTVGEIVNLMSVDAQRLSDAACFLHLLWSAPLQIILALYLLYGLLG-PSALAGVAVMVLLIPLN 358 (1381)
T ss_pred HHHHhhhcCchhhccCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHH
Confidence 99999999999886 899999999999999999999999999999999999999999999 99999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 433 TPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIAFLFWASPTLV 512 (1333)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~D~R~~~~~E~L~~Ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~a~~~~~~~~~p~lv 512 (1333)
.+++++++++|++.|+.+|+|+++|+|+|+|||+|||||||+.|.++|+++|++|++++||..|..+++.++++++|+++
T Consensus 359 ~~~a~~~~~~q~~~m~~~D~Rik~~nEiL~~IkviK~yaWE~~F~~~I~~~R~~El~~lrk~~~~~~~~~~~~~~~p~lv 438 (1381)
T KOG0054|consen 359 SFLAKKIAKFQKRLMKRKDERIKLMNEILNGIKVIKLYAWEKPFLKKIEDLRQKELKLLRKSAYLSALNSFLNFFSPVLV 438 (1381)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH-HhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-CCCCCCCCCCCCCCcc
Q 000720 513 SVITFGVCI-LLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDN-QKKPITEPTSKASDVA 590 (1333)
Q Consensus 513 ~~~tF~~~~-~~~~~Lt~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e-~~~~~~~~~~~~~~~~ 590 (1333)
+++||++|+ ..|+.+||+++|+++++||+|+.|+..+|..++.++|++||++|+++||..+| +++..++.+.++.+.+
T Consensus 439 ~~~tF~~~v~~~~~~lt~~~aF~slalfniLr~pl~~~P~~i~~~vqa~VS~~Ri~~fl~~~e~~~~~~~~~~~~~~~~~ 518 (1381)
T KOG0054|consen 439 SVVTFVVFVLLLGNLLTASTAFTSLALFNILRFPLFMLPSVISQLVQAKVSLKRLKEFLLSEELDPDSVERSPDEAGENA 518 (1381)
T ss_pred HHHHHHHHhhccCccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCccccccCCCCCCCce
Confidence 999999999 77889999999999999999999999999999999999999999999999999 5555444445556778
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECCeEEEEcCCCC
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSW 669 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g~iayv~Q~~~ 669 (1333)
|+++|++|+|+++ ++.++|+| ||+|++|+++||||++||||||||++|+||+++.+|++ .++|.+|||||+||
T Consensus 519 i~i~~~sfsW~~~-----~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v-~v~gsiaYv~Q~pW 592 (1381)
T KOG0054|consen 519 IEIKNGSFSWDSE-----SPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSV-AVNGSVAYVPQQPW 592 (1381)
T ss_pred EEEeeeeEecCCC-----CCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceE-EEcCeEEEeccccH
Confidence 9999999999975 45679999 99999999999999999999999999999999999996 99999999999999
Q ss_pred CCCCCHHHHhccCCcCCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCC
Q 000720 670 IQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFS 749 (1333)
Q Consensus 670 i~~~Tv~enI~~g~~~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDEP~s 749 (1333)
++|+||||||+||.++|+++|++++++|+|++|++.+|.||+|+|||||.||||||||||+||||+|+|+||||||||+|
T Consensus 593 I~ngTvreNILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplS 672 (1381)
T KOG0054|consen 593 IQNGTVRENILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLS 672 (1381)
T ss_pred hhCCcHHHhhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhcCCEEEEEeCCeEEEccChHHHHhhcchHHHHHHHhhhhcccCCC
Q 000720 750 AVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKAHRKSLDQVN 829 (1333)
Q Consensus 750 aLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~aD~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 829 (1333)
|||+|+++|+|++|+++.+++||+|+|||+++++++||.|++|+||+|.+.|+|+|+++ .+..+.++..+.... ..+
T Consensus 673 AVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L~~ad~Iivl~~G~I~~~Gty~el~~-~~~~~~~l~~~~~~~--~~~ 749 (1381)
T KOG0054|consen 673 AVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLPHADQIIVLKDGKIVESGTYEELLK-SGGDFAELAHEEESE--QEE 749 (1381)
T ss_pred hhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhhhhCCEEEEecCCeEecccCHHHHHh-cchhHHHHhhccchh--hcc
Confidence 99999999999999999999999999999999999999999999999999999999997 666666663222111 111
Q ss_pred CCCcccccc-cCCcCC--cchhhhhccCCCCc-CC-CCCC-ccccccccCcchHHHHHHHHHHhccchHHHHHHHHHHHH
Q 000720 830 PPQEDKCLS-RVPCQM--SQITEERFARPISC-GE-FSGR-SQDEDTELGRVKWTVYSAFITLVYKGALVPVILLCQVLF 903 (1333)
Q Consensus 830 ~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~-~~-~~~~-~~~e~~~~g~v~~~~y~~y~~~~~~~~~~~~~ll~~~l~ 903 (1333)
+.+...... +.+... +.....+...+... .+ ..++ .++|+|+.|.|+|++|+.|+++.+|+..+++++++.++.
T Consensus 750 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~G~v~~~vY~~Y~~a~~g~~~~~~~~~~~v~~ 829 (1381)
T KOG0054|consen 750 EASEKDLESGESSRESESRSLESLSSEEEKSKDEKEEEDKLVQEEERETGKVSWSVYKKYIKAAGGFLLVLLILLLFVLT 829 (1381)
T ss_pred ccccccccccccccchhhhhhhhhcccccccccccchhhHHHHHHHHhcCEeeHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 000000000 000000 00000000011101 11 1222 678889999999999999999977777777778888999
Q ss_pred HHHHHhhHHHHHHhccccc--c---cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccc
Q 000720 904 QALQMGSNYWIAWATDEKR--K---VSREQLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFF 978 (1333)
Q Consensus 904 ~~~~~~~~~wl~~~~~~~~--~---~~~~~~l~vy~~l~~~~~i~~~~~~~~~~~~~~~~s~~L~~~ll~~il~ap~~fF 978 (1333)
+++.++++||+++|++... . .+...|+++|.+++++++++.+++++.+..++.++|++||++|+++++|+||+||
T Consensus 830 ~~~~~~~~~WLs~W~~~~~~~~~~~~~~~~~~~vY~~l~~~~~~~~~~rs~~~~~~~l~aS~~Lh~~ml~~Ilrapm~FF 909 (1381)
T KOG0054|consen 830 QVLQIASNYWLSYWTDDGEDNGTTTVSTSFYLGVYALLGVASSLLTLLRSFLFAKGGLKASRKLHDKLLNSILRAPMSFF 909 (1381)
T ss_pred HHHHHHHHHHHHHhcCCcccccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhc
Confidence 9999999999999996532 1 3567899999999999999999999999999999999999999999999999999
Q ss_pred cccCcchhHHHHhccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 979 DSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQAYYITTARELARMV 1058 (1333)
Q Consensus 979 d~tp~GrIlnRfs~Di~~vd~~l~~~l~~~~~~~~~~l~~ivv~~~~~~~l~lv~ipl~~~~~~~~~~y~~~srel~rl~ 1058 (1333)
|+||+|||+||||+|++.+|..+|..+..++.++++++++++++++++|+++++++|+.++++++++||++++||++|++
T Consensus 910 dtTP~GRILNRFSkD~~~vD~~Lp~~~~~~~~~~~~~l~~~~vi~~~~P~fli~~~pl~v~~~~~~~~Y~~tsReLkRLe 989 (1381)
T KOG0054|consen 910 DTTPTGRILNRFSKDIDTVDVLLPFTLEFFLQSLLNVLGILVVISYVTPWFLIAIIPLGVIYYFVQRYYLATSRELKRLE 989 (1381)
T ss_pred CCCCccchhhhcccchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhhchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 000720 1059 GTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLIILVTLPRS 1138 (1333)
Q Consensus 1059 ~~~~spl~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~ll~~~~~~~~~~~~~~~~~~ 1138 (1333)
+.+|||+++||+||++|+.|||||++|++|.+++.+++|.+++++|....++||++.|+|+++++++++++++.+..+.+
T Consensus 990 sitRSPi~sh~~Etl~GlsTIRAf~~~~rf~~~~~~~~D~~~~~~f~~~~a~RWla~Rle~ig~~~v~~~al~~vl~~~~ 1069 (1381)
T KOG0054|consen 990 SITRSPIYSHFSETLQGLSTIRAFGKEERFIQENDELIDENSRAFFLSISANRWLAVRLELLGNLVVLIAALFAVLLPSG 1069 (1381)
T ss_pred hcccchHHHhHHHHhcCcceeeeccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999888888777665
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCcccCCCCCCCCCCCcccEEEEEEEEEEC
Q 000720 1139 AIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQYN 1218 (1333)
Q Consensus 1139 ~~~~g~~gl~l~y~l~l~~~l~~~v~~~~~le~~~~SveRI~~~~~~p~E~~~~~~~~~~~~~wp~~G~I~f~nVsf~Y~ 1218 (1333)
..+||.+|++++|++++++.++|.+|+.+++|++|+|||||.||.++|+|+|+..++.+||++||++|+|+|+|+++||+
T Consensus 1070 ~~~~g~vGLslsyal~lt~~l~~~vR~~~elEn~m~SVERv~eY~~~~~E~p~~~~~~~pp~~WP~~G~I~f~~~~~RYr 1149 (1381)
T KOG0054|consen 1070 LISPGLVGLSLSYALQLTGLLQWLVRQSSELENNMVSVERVLEYTDIPSEAPLEIEESRPPPSWPSKGEIEFEDLSLRYR 1149 (1381)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHhcCCCCCCCCCcCCCCCCCCCCCCeEEEEEeEEEeC
Confidence 57899999999999999999999999999999999999999999999999887777777999999999999999999999
Q ss_pred CCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCCCChHHHhhcCeEecccccccccc
Q 000720 1219 PTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGT 1298 (1333)
Q Consensus 1219 ~~~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~i~l~~LRs~isiVpQdp~LF~GT 1298 (1333)
|+.|+|||||||+|+||||||||||||||||||+++|||+.||.+|+|.|||+||++++|||||++++||||||+||+||
T Consensus 1150 p~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGT 1229 (1381)
T KOG0054|consen 1150 PNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGT 1229 (1381)
T ss_pred CCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCCCCHHHHHHHHHhCCCCcccccCC
Q 000720 1299 VRTNLDPLEQHSDQEIWEVKISKLLTHKSYQCE 1331 (1333)
Q Consensus 1299 IR~NLdp~~~~sDeeI~~aL~~~~L~~~~~~~~ 1331 (1333)
||+||||+++|||+|||+|||+|||++.+.+-|
T Consensus 1230 vR~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p 1262 (1381)
T KOG0054|consen 1230 VRFNLDPFDEYSDDEIWEALERCQLKDVVSSLP 1262 (1381)
T ss_pred cccccCcccccCHHHHHHHHHHhChHHHHhhCC
Confidence 999999999999999999999999999986544
No 2
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=3e-179 Score=1805.61 Aligned_cols=1123 Identities=31% Similarity=0.535 Sum_probs=987.0
Q ss_pred hccCCCCcccCChhHHHHHHhHHHHHHhhccCCCCCCCCCCCCCCCcHHHHHHHHHHHHHhhcC-CCCCHHHHHHHHHHH
Q 000720 197 LCKNISTFASAGVLSKITFHWLNQLFQRGRIQKLELLHIPPIPQSETANDASSLLEESLRKQKT-DATSLPQVIIHAVWK 275 (1333)
Q Consensus 197 ~~~~~~p~~~a~~~s~~~f~Wl~pl~~~g~~~~L~~~dl~~l~~~~~~~~~~~~f~~~w~~~~~-~~~~l~~~l~~~~~~ 275 (1333)
...+.+||++||+|||++|+|++|++++||+++|+.+|||+|+++|+++.+.++|++.|+++.+ ++|+|+++++++||+
T Consensus 222 ~~~~~~pe~~a~~~s~~~F~W~~pl~~~g~~~~L~~~Dl~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~l~~~l~~~~~~ 301 (1622)
T PLN03130 222 GGEQICPERHANIFSRIFFGWMTPLMQLGYKRPLTEKDVWKLDTWDQTETLYRSFQKCWDEELKKPKPWLLRALNNSLGG 301 (1622)
T ss_pred ccCCCCcccccCHHHHHHHHHHHHHHHHHhcCCCChhhccCCChhhhHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 3467799999999999999999999999999999999999999999999999999999998743 458999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 276 SLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSALTV 355 (1333)
Q Consensus 276 ~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~~~~rir~~l~~ 355 (1333)
.++..++++++.+++.+++|++++.+++++.+++. .+. |+.++++++++.++.+++.++|++...+++.++|+.+..
T Consensus 302 ~~~~~~~~~i~~~~~~~~~P~ll~~li~~v~~~~~--~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~ 378 (1622)
T PLN03130 302 RFWLGGFFKIGNDLSQFVGPLLLNLLLESMQNGEP--AWI-GYIYAFSIFVGVVLGVLCEAQYFQNVMRVGFRLRSTLVA 378 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc--chH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999975432 344 788887777777777788888988899999999999999
Q ss_pred HHHHHHhccccCCC---ChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 000720 356 LIYKRSMAIKFAGP---SSGIIINMINVDVERIGDFFLYIHRIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFVMVSN 432 (1333)
Q Consensus 356 ~iy~K~L~ls~~~~---~~G~i~nlms~D~~~i~~~~~~~~~~w~~plqi~~~l~lL~~~lG~~a~l~gl~~~~~~~~~~ 432 (1333)
.+|+|.++++.... ++|+++|+|++|++++.+++..+|.+|..|+++++++++||..+| +++++|++++++++|++
T Consensus 379 ~i~~k~L~l~~~~~~~~~~G~ivnl~s~Dv~~i~~~~~~l~~l~~~pl~ii~~~~lL~~~lg-~~~l~g~~v~~l~~~l~ 457 (1622)
T PLN03130 379 AVFRKSLRLTHEGRKKFTSGKITNLMTTDAEALQQICQQLHTLWSAPFRIIIAMVLLYQQLG-VASLIGSLMLVLMFPIQ 457 (1622)
T ss_pred HHHHHHhcCChhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 99999999987543 789999999999999999999999999999999999999999999 99999998999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 433 TPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIAFLFWASPTLV 512 (1333)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~D~R~~~~~E~L~~Ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~a~~~~~~~~~p~lv 512 (1333)
..+++++++.++++++.+|+|++.++|+|+|||+||+|+||+.|.+++++.|++|++..++..+..++..++.+..|.++
T Consensus 458 ~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gi~~IK~~~~E~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~v 537 (1622)
T PLN03130 458 TFIISKMQKLTKEGLQRTDKRIGLMNEVLAAMDTVKCYAWENSFQSKVQTVRDDELSWFRKAQLLSAFNSFILNSIPVLV 537 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998888887778888888
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCCccEE
Q 000720 513 SVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPITEPTSKASDVAID 592 (1333)
Q Consensus 513 ~~~tF~~~~~~~~~Lt~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~~~~~~~~~~~~I~ 592 (1333)
++++|++|.+.++++|++.+|+++++|++++.|+..+|..+..+.++++|++||++||+.+|..+... .+.......|+
T Consensus 538 ~~~~fg~~~~~~g~Lt~g~vf~~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~~L~~~e~~~~~~-~~~~~~~~~I~ 616 (1622)
T PLN03130 538 TVVSFGVFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNLITQAVNANVSLKRLEELLLAEERVLLPN-PPLEPGLPAIS 616 (1622)
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccC-CcccCCCCceE
Confidence 99999999999999999999999999999999999999999999999999999999998776321111 11111234699
Q ss_pred EeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCC-CcEEEECCeEEEEcCCCCC
Q 000720 593 IEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRIS-GAAIKVHGKKAYVPQSSWI 670 (1333)
Q Consensus 593 i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~-G~~i~~~g~iayv~Q~~~i 670 (1333)
++|++|+|+++ +++++|+| ||++++||+++|+||+|||||||+++|+|+++|.+ |++ .+++++|||+|+||+
T Consensus 617 ~~nvsf~y~~~-----~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I-~l~~~Iayv~Q~p~L 690 (1622)
T PLN03130 617 IKNGYFSWDSK-----AERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASV-VIRGTVAYVPQVSWI 690 (1622)
T ss_pred EEeeEEEccCC-----CCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceE-EEcCeEEEEcCcccc
Confidence 99999999864 34678999 99999999999999999999999999999999999 776 899999999999999
Q ss_pred CCCCHHHHhccCCcCCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCC
Q 000720 671 QTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSA 750 (1333)
Q Consensus 671 ~~~Tv~enI~~g~~~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDEP~sa 750 (1333)
+++||||||+||.++++++|++++++|++.+|++.+|+||+|.+|++|.+|||||||||+||||+|++||||||||||||
T Consensus 691 fngTIreNI~fg~~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDEptSA 770 (1622)
T PLN03130 691 FNATVRDNILFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSA 770 (1622)
T ss_pred CCCCHHHHHhCCCcccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhcCCEEEEEeCCeEEEccChHHHHhhcchHHHHHHHhhhhcccCCCC
Q 000720 751 VDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKAHRKSLDQVNP 830 (1333)
Q Consensus 751 LD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~aD~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 830 (1333)
||++++++++++++++.++++|+|+|||+++.++.||+|++|++|+|++.|+++++.+ ....+.++...+....+..+.
T Consensus 771 LD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i~e~Gt~~eL~~-~~~~~~~l~~~~~~~~~~~~~ 849 (1622)
T PLN03130 771 LDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTYEELSN-NGPLFQKLMENAGKMEEYVEE 849 (1622)
T ss_pred cCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHHhCCEEEEEeCCEEEEeCCHHHHHh-cchhHHHHHHhcccccccccc
Confidence 9999999999999988888999999999999999999999999999999999999987 555566555433211100000
Q ss_pred CCccc-ccccCCcCCcch-hh-hhccC-CCCcCCCCCC-ccccccccCcchHHHHHHHHHHhccchHHHHHHHHHHHHHH
Q 000720 831 PQEDK-CLSRVPCQMSQI-TE-ERFAR-PISCGEFSGR-SQDEDTELGRVKWTVYSAFITLVYKGALVPVILLCQVLFQA 905 (1333)
Q Consensus 831 ~~~~~-~~~~~~~~~~~~-~~-~~~~~-~~~~~~~~~~-~~~e~~~~g~v~~~~y~~y~~~~~~~~~~~~~ll~~~l~~~ 905 (1333)
..+.. ............ .. .+... ....+..... .++|+++.|.+++++|+.|+++.++.+.+.+++++.++.++
T Consensus 850 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~vy~~Y~~~~g~~~~~~~~~~~~~~~~~ 929 (1622)
T PLN03130 850 NGEEEDDQTSSKPVANGNANNLKKDSSSKKKSKEGKSVLIKQEERETGVVSWKVLERYKNALGGAWVVMILFLCYVLTEV 929 (1622)
T ss_pred cccccccccccccccccccccccccccccccccccchhhhhHHHHhcCccCHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 00000 000000000000 00 00000 0000001112 45678889999999999999987665555555666677788
Q ss_pred HHHhhHHHHHHhccccc--ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCc
Q 000720 906 LQMGSNYWIAWATDEKR--KVSREQLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPS 983 (1333)
Q Consensus 906 ~~~~~~~wl~~~~~~~~--~~~~~~~l~vy~~l~~~~~i~~~~~~~~~~~~~~~~s~~L~~~ll~~il~ap~~fFd~tp~ 983 (1333)
+.+++++|+++|++... ......|+++|++++++..++.+++.+++...+.++++++|++++++++++|++|||++|+
T Consensus 930 ~~~~~~~wl~~w~~~~~~~~~~~~~~~~i~~~l~~~~~i~~~~~~~~~~~~~~~~~~~L~~~l~~~ll~~p~~ffd~~~~ 1009 (1622)
T PLN03130 930 FRVSSSTWLSEWTDQGTPKTHGPLFYNLIYALLSFGQVLVTLLNSYWLIMSSLYAAKRLHDAMLGSILRAPMSFFHTNPL 1009 (1622)
T ss_pred HHHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhccCCc
Confidence 88999999999986432 2234568889999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHhccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhc
Q 000720 984 SRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQAYYITTARELARMVGTRKA 1063 (1333)
Q Consensus 984 GrIlnRfs~Di~~vd~~l~~~l~~~~~~~~~~l~~ivv~~~~~~~l~lv~ipl~~~~~~~~~~y~~~srel~rl~~~~~s 1063 (1333)
|+|+|||++|++.+|..++..+..++..++.+++.++++++++|...++++|+.+++++++++|.+++|+++|++.++++
T Consensus 1010 G~IlnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~i~~~~~~~~~~~~pl~~~~~~~~~~~~~~~r~~~r~~~~~~s 1089 (1622)
T PLN03130 1010 GRIINRFAKDLGDIDRNVAVFVNMFLGQIFQLLSTFVLIGIVSTISLWAIMPLLVLFYGAYLYYQSTAREVKRLDSITRS 1089 (1622)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999998777778888888888899999999999999999999
Q ss_pred hHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC----C
Q 000720 1064 PILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLIILVTLPRS----A 1139 (1333)
Q Consensus 1064 pl~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~ll~~~~~~~~~~~~~~~~~~----~ 1139 (1333)
|+++|++|+++|+.|||+|+++++|.+++.+..|.+.+..+.....++|++.++++++++++.+...+.+..... .
T Consensus 1090 ~~~~~~~Etl~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~i~~~~~~~v~~~~~~~~~~ 1169 (1622)
T PLN03130 1090 PVYAQFGEALNGLSTIRAYKAYDRMAEINGRSMDNNIRFTLVNMSSNRWLAIRLETLGGLMIWLTASFAVMQNGRAENQA 1169 (1622)
T ss_pred hHHHHHHHHhCCHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccch
Confidence 999999999999999999999999999999999999999999999999999999998876655444333322111 1
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCcccCCCCCCCCCCCcccEEEEEEEEEECC
Q 000720 1140 IDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQYNP 1219 (1333)
Q Consensus 1140 ~~~g~~gl~l~y~l~l~~~l~~~v~~~~~le~~~~SveRI~~~~~~p~E~~~~~~~~~~~~~wp~~G~I~f~nVsf~Y~~ 1219 (1333)
..++.+|++++|++.+...+.++++.+.++|+.++|+||+.+|+++|+|++...++..+++.||.+|.|+|+||+|+|++
T Consensus 1170 ~~~~~~G~~ls~~~~~~~~l~~l~~~~~~~e~~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~ 1249 (1622)
T PLN03130 1170 AFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGTYIDLPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRP 1249 (1622)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccccCCCCCCCCCCCCcEEEEEEEEEeCC
Confidence 12678999999999999999999999999999999999999999999887654344456678999999999999999998
Q ss_pred CCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCCCChHHHhhcCeEecccccccccch
Q 000720 1220 TLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTV 1299 (1333)
Q Consensus 1220 ~~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~i~l~~LRs~isiVpQdp~LF~GTI 1299 (1333)
+.|+||||+||+|+||||||||||||||||||+++|+|+|||++|+|+|||+||+++++++||++|++|||||+||+|||
T Consensus 1250 ~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTI 1329 (1622)
T PLN03130 1250 ELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTV 1329 (1622)
T ss_pred CCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCccccccH
Confidence 87789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCCCCHHHHHHHHHhCCCCcccccCC
Q 000720 1300 RTNLDPLEQHSDQEIWEVKISKLLTHKSYQCE 1331 (1333)
Q Consensus 1300 R~NLdp~~~~sDeeI~~aL~~~~L~~~~~~~~ 1331 (1333)
|+||||+++++|+|||+||++||+++.+.+.|
T Consensus 1330 reNLd~~~~~tdeei~~Al~~a~l~~~I~~lp 1361 (1622)
T PLN03130 1330 RFNLDPFNEHNDADLWESLERAHLKDVIRRNS 1361 (1622)
T ss_pred HHHhCcCCCCCHHHHHHHHHHcCcHHHHHhCc
Confidence 99999999999999999999999998876654
No 3
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=5.5e-176 Score=1776.22 Aligned_cols=1122 Identities=30% Similarity=0.527 Sum_probs=984.2
Q ss_pred ccCCCCcccCChhHHHHHHhHHHHHHhhccCCCCCCCCCCCCCCCcHHHHHHHHHHHHHhhcC-CCCCHHHHHHHHHHHH
Q 000720 198 CKNISTFASAGVLSKITFHWLNQLFQRGRIQKLELLHIPPIPQSETANDASSLLEESLRKQKT-DATSLPQVIIHAVWKS 276 (1333)
Q Consensus 198 ~~~~~p~~~a~~~s~~~f~Wl~pl~~~g~~~~L~~~dl~~l~~~~~~~~~~~~f~~~w~~~~~-~~~~l~~~l~~~~~~~ 276 (1333)
+.+.+||++||+|||++|+|++|++++||+++|+.+|||+|+++|+++.+.++|++.|+++.+ ++++|+++++++|++.
T Consensus 223 ~~~~~pe~~a~~~s~~~f~w~~pl~~~g~~~~L~~~dl~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~l~~~l~~~~~~~ 302 (1495)
T PLN03232 223 GENICPERYASIFSRIYFSWMTPLMQLGYRKPITEKDVWQLDQWDQTETLIKRFQRCWTEESRRPKPWLLRALNNSLGGR 302 (1495)
T ss_pred cCCCCccccCCHHHHHHHHHHHHHHHHHhcCCCChhhccCCChhhhHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHH
Confidence 467899999999999999999999999999999999999999999999999999999998754 4589999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 277 LALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSALTVL 356 (1333)
Q Consensus 277 ~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~~~~rir~~l~~~ 356 (1333)
++..++++++.+++.+++|++++.+++++++++. ... |+.++++++++.++.+++.++|++...+++.++|+.+...
T Consensus 303 ~~~~~~~~i~~~~~~~~~P~ll~~li~~~~~~~~--~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~l~~~ 379 (1495)
T PLN03232 303 FWLGGIFKIGHDLSQFVGPVILSHLLQSMQEGDP--AWV-GYVYAFLIFFGVTFGVLCESQYFQNVGRVGFRLRSTLVAA 379 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc--cch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999976432 334 8888888888888889999999999999999999999999
Q ss_pred HHHHHhccccCCC---ChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 000720 357 IYKRSMAIKFAGP---SSGIIINMINVDVERIGDFFLYIHRIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFVMVSNT 433 (1333)
Q Consensus 357 iy~K~L~ls~~~~---~~G~i~nlms~D~~~i~~~~~~~~~~w~~plqi~~~l~lL~~~lG~~a~l~gl~~~~~~~~~~~ 433 (1333)
+|+|.++++.... ++|+++|+|++|++++.++...+|.+|..|++++++++++|..+| ++++++++++++++|++.
T Consensus 380 i~~k~l~l~~~~~~~~~~G~i~n~ls~Dv~~i~~~~~~l~~l~~~p~~ii~~~~~l~~~lg-~~~l~~~~v~~l~~pl~~ 458 (1495)
T PLN03232 380 IFHKSLRLTHEARKNFASGKVTNMITTDANALQQIAEQLHGLWSAPFRIIVSMVLLYQQLG-VASLFGSLILFLLIPLQT 458 (1495)
T ss_pred HHHHHhcCChhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHH
Confidence 9999999987543 789999999999999999999999999999999999999999999 999999988889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 434 PLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIAFLFWASPTLVS 513 (1333)
Q Consensus 434 ~~~~~~~~~~~~~~~~~D~R~~~~~E~L~~Ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~a~~~~~~~~~p~lv~ 513 (1333)
.+++++++.++++++.+|+|.+.++|+++|||+||+|+||+.|.+++++.|++|++..++..+..+...++.+..|.+++
T Consensus 459 ~~~~~~~~~~~~~~~~~d~r~~~~~E~l~gi~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 538 (1495)
T PLN03232 459 LIVRKMRKLTKEGLQWTDKRVGIINEILASMDTVKCYAWEKSFESRIQGIRNEELSWFRKAQLLSAFNSFILNSIPVVVT 538 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998888877777777888888
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCCccEEE
Q 000720 514 VITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPITEPTSKASDVAIDI 593 (1333)
Q Consensus 514 ~~tF~~~~~~~~~Lt~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~~~~~~~~~~~~I~i 593 (1333)
+++|++|.+.++++|++.+|+++++++.+..|+..+|..+..+.++++|++||++||+.+|+.+... .+.......|++
T Consensus 539 ~~~fg~~~v~~~~lt~g~vf~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~~~~~~~~~-~~~~~~~~~I~~ 617 (1495)
T PLN03232 539 LVSFGVFVLLGGDLTPARAFTSLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLSEERILAQN-PPLQPGAPAISI 617 (1495)
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccc-CCcCCCCCcEEE
Confidence 8999999999999999999999999999999999999999999999999999999998776321111 111112347999
Q ss_pred eeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECCeEEEEcCCCCCCC
Q 000720 594 EAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQT 672 (1333)
Q Consensus 594 ~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g~iayv~Q~~~i~~ 672 (1333)
+|++|+|+.+ +++++|+| ||++++||+++|+||+|||||||+++|+|+++|.+|++..+++++|||+|+||+++
T Consensus 618 ~~vsF~y~~~-----~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~~~~~Iayv~Q~p~Lf~ 692 (1495)
T PLN03232 618 KNGYFSWDSK-----TSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAYVPQVSWIFN 692 (1495)
T ss_pred EeeEEEcCCC-----CCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEEEecCcEEEEcCcccccc
Confidence 9999999864 34678999 99999999999999999999999999999999999987788999999999999999
Q ss_pred CCHHHHhccCCcCCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCC
Q 000720 673 GTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVD 752 (1333)
Q Consensus 673 ~Tv~enI~~g~~~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD 752 (1333)
+||||||+||.++++++|++++++|++.+|++.+|+||+|.+||+|.+|||||||||+||||+|++||||||||||||||
T Consensus 693 gTIreNI~fg~~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD 772 (1495)
T PLN03232 693 ATVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALD 772 (1495)
T ss_pred ccHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEEecCchhhhhcCCEEEEEeCCeEEEccChHHHHhhcchHHHHHHHhhhhcccCCCCCC
Q 000720 753 AHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKAHRKSLDQVNPPQ 832 (1333)
Q Consensus 753 ~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~aD~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 832 (1333)
++++++++++++.+.++++|+|+|||+++.++.||+|++|++|+|++.|+++++.+ .+..+.++...+....+..+..+
T Consensus 773 ~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~~~Gt~~eL~~-~~~~~~~l~~~~~~~~~~~~~~~ 851 (1495)
T PLN03232 773 AHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAELSK-SGSLFKKLMENAGKMDATQEVNT 851 (1495)
T ss_pred HHHHHHHHHHHhhhhhcCCEEEEEECChhhHHhCCEEEEEeCCEEEEecCHHHHHh-cchhHHHHHHhcccccccccccc
Confidence 99999999999988788999999999999999999999999999999999999987 55556555543321110000000
Q ss_pred cccccccCCcCCcchhhhhccCCCCcCCC-CCC-ccccccccCcchHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhh
Q 000720 833 EDKCLSRVPCQMSQITEERFARPISCGEF-SGR-SQDEDTELGRVKWTVYSAFITLVYKGALVPVILLCQVLFQALQMGS 910 (1333)
Q Consensus 833 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~e~~~~g~v~~~~y~~y~~~~~~~~~~~~~ll~~~l~~~~~~~~ 910 (1333)
..+...........+............+. ... .++|+++.|.+++++|+.|+++.++++.+.+++++.++.+++.+++
T Consensus 852 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~vy~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~ 931 (1495)
T PLN03232 852 NDENILKLGPTVTIDVSERNLGSTKQGKRGRSVLVKQEERETGIISWNVLMRYNKAVGGLWVVMILLVCYLTTEVLRVSS 931 (1495)
T ss_pred cccccccccccccccccccccccccccccchhhhhhHHHHhcCcccHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 00000000000000000000000000010 111 5678888999999999999998766555555566667778888899
Q ss_pred HHHHHHhccccc--ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCcchhHH
Q 000720 911 NYWIAWATDEKR--KVSREQLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILN 988 (1333)
Q Consensus 911 ~~wl~~~~~~~~--~~~~~~~l~vy~~l~~~~~i~~~~~~~~~~~~~~~~s~~L~~~ll~~il~ap~~fFd~tp~GrIln 988 (1333)
++|+++|++... ......|+++|++++++..++.+++.+++...+.++++++|++++++++++|++|||++|+|+|+|
T Consensus 932 ~~wl~~w~~~~~~~~~~~~~~l~~y~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~ff~~~~~G~iln 1011 (1495)
T PLN03232 932 STWLSIWTDQSTPKSYSPGFYIVVYALLGFGQVAVTFTNSFWLISSSLHAAKRLHDAMLNSILRAPMLFFHTNPTGRVIN 1011 (1495)
T ss_pred HHHHHHHhcccCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeCcCCchHHHH
Confidence 999999985332 223567899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhchHHHH
Q 000720 989 RCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQAYYITTARELARMVGTRKAPILHH 1068 (1333)
Q Consensus 989 Rfs~Di~~vd~~l~~~l~~~~~~~~~~l~~ivv~~~~~~~l~lv~ipl~~~~~~~~~~y~~~srel~rl~~~~~spl~~~ 1068 (1333)
||++|++.+|+.++..+..++..++.+++.++++++.++...++++|+.+++++++.+|.+++|+++|.+..+++|+++|
T Consensus 1012 r~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~~~~~ 1091 (1495)
T PLN03232 1012 RFSKDIGDIDRNVANLMNMFMNQLWQLLSTFALIGTVSTISLWAIMPLLILFYAAYLYYQSTSREVRRLDSVTRSPIYAQ 1091 (1495)
T ss_pred HhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHH
Confidence 99999999999999999999999999999998888888777777788877788888999999999999999999999999
Q ss_pred HHHHhcchHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC-----ChH
Q 000720 1069 FSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLIILVTLPRSAI-----DPS 1143 (1333)
Q Consensus 1069 ~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~ll~~~~~~~~~~~~~~~~~~~~-----~~g 1143 (1333)
++|+++|+.|||+|+++++|.+++.+..|.+.+..+.....++|+..++++++++++.+...+.+.. .+.. .++
T Consensus 1092 ~~E~l~G~~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~~ 1170 (1495)
T PLN03232 1092 FGEALNGLSSIRAYKAYDRMAKINGKSMDNNIRFTLANTSSNRWLTIRLETLGGVMIWLTATFAVLR-NGNAENQAGFAS 1170 (1495)
T ss_pred HHHHhcChHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cccccccccchH
Confidence 9999999999999999999999999999999999999889999999999988765544433333221 2221 256
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCcccCCCCCCCCCCCcccEEEEEEEEEECCCCCC
Q 000720 1144 LAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPTLPM 1223 (1333)
Q Consensus 1144 ~~gl~l~y~l~l~~~l~~~v~~~~~le~~~~SveRI~~~~~~p~E~~~~~~~~~~~~~wp~~G~I~f~nVsf~Y~~~~p~ 1223 (1333)
.+|++++|+..+...+.++++.++++|+.++|+|||.+|++.|+|++...++..+++.||.+|+|+|+||+|+|+++.|+
T Consensus 1171 ~~g~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~eRi~e~~~~~~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~~~~~ 1250 (1495)
T PLN03232 1171 TMGLLLSYTLNITTLLSGVLRQASKAENSLNSVERVGNYIDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPGLPP 1250 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCCCCCCCCCCcEEEEEEEEEECCCCCc
Confidence 78889999999999999999999999999999999999999988865432333456689999999999999999888778
Q ss_pred ccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCCCChHHHhhcCeEecccccccccchhhhc
Q 000720 1224 VLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNL 1303 (1333)
Q Consensus 1224 VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~i~l~~LRs~isiVpQdp~LF~GTIR~NL 1303 (1333)
||||+||+|+||||||||||||||||||+++|+|+|||++|+|+|||+||+++++++||++|++|||||+||+||||+||
T Consensus 1251 vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL 1330 (1495)
T PLN03232 1251 VLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNI 1330 (1495)
T ss_pred ccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHhCCCCcccccCC
Q 000720 1304 DPLEQHSDQEIWEVKISKLLTHKSYQCE 1331 (1333)
Q Consensus 1304 dp~~~~sDeeI~~aL~~~~L~~~~~~~~ 1331 (1333)
||+++++|+|||+||++|||++.+.+.|
T Consensus 1331 ~~~~~~sdeei~~al~~a~l~~~I~~lp 1358 (1495)
T PLN03232 1331 DPFSEHNDADLWEALERAHIKDVIDRNP 1358 (1495)
T ss_pred CCCCCCCHHHHHHHHHHcCCHHHHHhCc
Confidence 9999999999999999999998876654
No 4
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=8.4e-174 Score=1757.20 Aligned_cols=1120 Identities=31% Similarity=0.559 Sum_probs=981.6
Q ss_pred cCCCCcccCChhHHHHHHhHHHHHHhhccCCCCCCCCCCCCCCCcHHHHHHHHHHHHHhhc-------------------
Q 000720 199 KNISTFASAGVLSKITFHWLNQLFQRGRIQKLELLHIPPIPQSETANDASSLLEESLRKQK------------------- 259 (1333)
Q Consensus 199 ~~~~p~~~a~~~s~~~f~Wl~pl~~~g~~~~L~~~dl~~l~~~~~~~~~~~~f~~~w~~~~------------------- 259 (1333)
.+.+||++||++||++|||+||++++||+++|+.+|||+++++++++.+.++|++.|+++.
T Consensus 199 ~~~~~e~~a~~~s~~~f~W~~pl~~~g~~~~L~~~dl~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~ 278 (1522)
T TIGR00957 199 PNPCPESSASFLSRITFWWITGMAVYGYRQPLEESDLWSLNKEDTSEMVVPVLVENWKKECKKTRKQPVSAVYGKKDPSK 278 (1522)
T ss_pred CCCCCcccCCHHHHHHHHHhHHHHHHHhcCCCChhhccCCCHhHhHHHHHHHHHHHHHHHHhhccccccccccccccccc
Confidence 3468999999999999999999999999999999999999999999999999999998651
Q ss_pred -----------------------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhH
Q 000720 260 -----------------------TDATSLPQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHY 316 (1333)
Q Consensus 260 -----------------------~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~ 316 (1333)
.++++|+++++++||+.++..++++++.+++.+++|++++.+++|++++.. +...
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~~~l~~~~~~~~l~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~-~~~~- 356 (1522)
T TIGR00957 279 PKGSSQLDANEEVEALIVKSPHKPRKPSLFKVLYKTFGPYFLMSFCFKAIHDLMMFIGPQILSLLIRFVNDPMA-PDWQ- 356 (1522)
T ss_pred ccccccccccccccccccccccccCCccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-ccch-
Confidence 023689999999999999999999999999999999999999999976543 1334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCC---ChHHHHHHHHhhHHHHHHHHHHHH
Q 000720 317 GLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSALTVLIYKRSMAIKFAGP---SSGIIINMINVDVERIGDFFLYIH 393 (1333)
Q Consensus 317 g~~l~~~l~~~~~~~~l~~~~~~~~~~~~~~rir~~l~~~iy~K~L~ls~~~~---~~G~i~nlms~D~~~i~~~~~~~~ 393 (1333)
||.+++++++..++.+++.++|+|...++++++|++|.+.||+|.|+++.... ++|+++|+|++|++|+.++..++|
T Consensus 357 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~~iy~K~L~l~~~~~~~~~~G~i~nl~s~D~~~i~~~~~~~~ 436 (1522)
T TIGR00957 357 GYFYTGLLFVCACLQTLILHQYFHICFVSGMRIKTAVMGAVYRKALVITNSARKSSTVGEIVNLMSVDAQRFMDLATYIN 436 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhcCCCCHHHHHHHHHHhHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999987654 789999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchH
Q 000720 394 RIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWE 473 (1333)
Q Consensus 394 ~~w~~plqi~~~l~lL~~~lG~~a~l~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~R~~~~~E~L~~Ir~IK~~~wE 473 (1333)
.+|..|+++++++++||..+| +++++|++++++++|++..+++.++++++++|+.+|+|++.++|+|+|||+||+|+||
T Consensus 437 ~~~~~~~~i~~~~~ll~~~~g-~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~~ik~IK~~~~e 515 (1522)
T TIGR00957 437 MIWSAPLQVILALYFLWLNLG-PSVLAGVAVMVLMVPLNAVMAMKTKTYQVAHMKSKDNRIKLMNEILNGIKVLKLYAWE 515 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 999999999999999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 474 QEFLKKLLRLREIERDSLKKYLYTCSAIAFLFWASPTLVSVITFGVCILL--KTPLTSGAVLSALATFRILQEPIYNLPE 551 (1333)
Q Consensus 474 ~~f~~~i~~~R~~E~~~l~~~~~~~a~~~~~~~~~p~lv~~~tF~~~~~~--~~~Lt~~~vft~lalf~~l~~pl~~lp~ 551 (1333)
+.|.+++++.|++|++..++..+..+...+.++.+|.++.+++|++|.+. ++.|+++.+|+++++|++++.|+..+|.
T Consensus 516 ~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~ 595 (1522)
T TIGR00957 516 LAFLDKVEGIRQEELKVLKKSAYLHAVGTFTWVCTPFLVALITFAVYVTVDENNILDAEKAFVSLALFNILRFPLNILPM 595 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998888877777788999999999999876 4679999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCC-CCCCCCCCC-CCCCccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEE
Q 000720 552 LISMIAQTKVSLYRIQEFIKEDNQ-KKPITEPTS-KASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAV 628 (1333)
Q Consensus 552 ~i~~~~~a~vS~~RI~~fL~~~e~-~~~~~~~~~-~~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~i 628 (1333)
.++.+.++++|++||++||+.+|. ++..+.... ......|+++|++|+|+.+ ++++|+| |+++++||+++|
T Consensus 596 ~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~------~~~~l~~isl~i~~G~~v~I 669 (1522)
T TIGR00957 596 VISSIVQASVSLKRLRIFLSHEELEPDSIERRTIKPGEGNSITVHNATFTWARD------LPPTLNGITFSIPEGALVAV 669 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHcCcccccccccccccCCCCCCcEEEEEeEEEcCCC------CCceeeeeEEEEcCCCEEEE
Confidence 999999999999999999987762 221111111 1122379999999999753 3578999 999999999999
Q ss_pred ECCCCCChhHHHHHHhCCCcCCCCcEEEECCeEEEEcCCCCCCCCCHHHHhccCCcCCHHHHHHHHHHcccchHHHhhcC
Q 000720 629 CGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWAD 708 (1333)
Q Consensus 629 vG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g~iayv~Q~~~i~~~Tv~enI~~g~~~~~~~~~~v~~~~~l~~d~~~~~~ 708 (1333)
+||||||||||+++|+|+++|.+|++ .++|++|||||+||++++||+|||.||.++++++|++++++|++.+|++.+|+
T Consensus 670 vG~~GsGKSTLl~~l~g~~~~~~G~i-~~~g~i~yv~Q~~~l~~~Ti~eNI~~g~~~~~~~~~~~~~~~~l~~~l~~~~~ 748 (1522)
T TIGR00957 670 VGQVGCGKSSLLSALLAEMDKVEGHV-HMKGSVAYVPQQAWIQNDSLRENILFGKALNEKYYQQVLEACALLPDLEILPS 748 (1522)
T ss_pred ECCCCCCHHHHHHHHhCCCccCCcEE-EECCEEEEEcCCccccCCcHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhcCC
Confidence 99999999999999999999999996 89999999999999999999999999999999999999999999999999999
Q ss_pred CCccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHH--HHhCCCeEEEecCchhhhhcC
Q 000720 709 GDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLM--GLLSQKTVLYTTHQLEFLDAA 786 (1333)
Q Consensus 709 g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~--~~~~~~TvIlvtH~~~~l~~a 786 (1333)
||+|.+|++|.+|||||||||+||||+|++||+|||||||||||+++++++++.++. +..+++|+|+|||+++.++.|
T Consensus 749 g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~ 828 (1522)
T TIGR00957 749 GDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQV 828 (1522)
T ss_pred CCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhC
Confidence 999999999999999999999999999999999999999999999999999998874 456789999999999999999
Q ss_pred CEEEEEeCCeEEEccChHHHHhhcchHHHHHHHhhhhcccCCC-CC-------Ccccccc--cC--------CcC-----
Q 000720 787 DLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKAHRKSLDQVN-PP-------QEDKCLS--RV--------PCQ----- 843 (1333)
Q Consensus 787 D~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~-------~~~~~~~--~~--------~~~----- 843 (1333)
|+|++|++|+|++.|+++++.+ ....+.++...+....+... .. .+..... +. ...
T Consensus 829 D~ii~l~~G~i~~~g~~~~l~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 907 (1522)
T TIGR00957 829 DVIIVMSGGKISEMGSYQELLQ-RDGAFAEFLRTYAPDEQQGHLEDSWTALVSGEGKEAKLIENGMLVTDVVGKQLQRQL 907 (1522)
T ss_pred CEEEEecCCeEEeeCCHHHHHh-cchhHHHHHHhhccccccccccccccccccccccccccccccccccccccchhhhhc
Confidence 9999999999999999999987 44455555443221110000 00 0000000 00 000
Q ss_pred --Ccchhhhh-----ccCCCCc-C-C-CCCC-ccccccccCcchHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhHH
Q 000720 844 --MSQITEER-----FARPISC-G-E-FSGR-SQDEDTELGRVKWTVYSAFITLVYKGALVPVILLCQVLFQALQMGSNY 912 (1333)
Q Consensus 844 --~~~~~~~~-----~~~~~~~-~-~-~~~~-~~~e~~~~g~v~~~~y~~y~~~~~~~~~~~~~ll~~~l~~~~~~~~~~ 912 (1333)
........ ...+... + + ...+ .++|+++.|++++++|+.|+++.+ +..+++++++.++.+++..+.++
T Consensus 908 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~Y~~~~g-~~~~~~~~~~~~~~~~~~~~~~~ 986 (1522)
T TIGR00957 908 SASSSDSGDQSRHHGSSAELQKAEAKEETWKLMEADKAQTGQVELSVYWDYMKAIG-LFITFLSIFLFVCNHVSALASNY 986 (1522)
T ss_pred cccccccccccccccccccccccccccchhhhHHHHHHhcCcccHHHHHHHHHHcC-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000000 0000000 0 0 0112 456777889999999999999874 34444445555677788899999
Q ss_pred HHHHhccccc----ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCcchhHH
Q 000720 913 WIAWATDEKR----KVSREQLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILN 988 (1333)
Q Consensus 913 wl~~~~~~~~----~~~~~~~l~vy~~l~~~~~i~~~~~~~~~~~~~~~~s~~L~~~ll~~il~ap~~fFd~tp~GrIln 988 (1333)
|+++|++... ..+...|+++|++++++..++.+++.+++...+.++++++|++++++++++|++|||++|+|+|+|
T Consensus 987 ~l~~w~~~~~~~~~~~~~~~~~~iy~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~iln 1066 (1522)
T TIGR00957 987 WLSLWTDDPMVNGTQNNTSLRLSVYGALGILQGFAVFGYSMAVSIGGIQASRVLHQDLLHNKLRSPMSFFERTPSGNLVN 1066 (1522)
T ss_pred HHHHHhccccccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHhccCChHHHHH
Confidence 9999986321 122456788999999999999999989999999999999999999999999999999999999999
Q ss_pred HHhccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhchHHHH
Q 000720 989 RCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQAYYITTARELARMVGTRKAPILHH 1068 (1333)
Q Consensus 989 Rfs~Di~~vd~~l~~~l~~~~~~~~~~l~~ivv~~~~~~~l~lv~ipl~~~~~~~~~~y~~~srel~rl~~~~~spl~~~ 1068 (1333)
||++|++.+|+.++..+..++..++.+++.++++++.+|+++++++|+++++++++++|.+++|+++|++.++++|+++|
T Consensus 1067 R~s~Di~~id~~l~~~~~~~~~~~~~~i~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~l~~~ 1146 (1522)
T TIGR00957 1067 RFSKELDTVDSMIPPVIKMFMGSLFNVIGALIVILLATPIAAVIIPPLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSH 1146 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 99999999999999999999999999999999999999988888888888899999999999999999999999999999
Q ss_pred HHHHhcchHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChHHHHHH
Q 000720 1069 FSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLIILVTLPRSAIDPSLAGLA 1148 (1333)
Q Consensus 1069 ~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~ll~~~~~~~~~~~~~~~~~~~~~~g~~gl~ 1148 (1333)
++|+++|+.|||+|++|++|.+++.+..|.++++.+.....++|+..++++++++++.++..+.+ ...+.+++|.+|++
T Consensus 1147 ~~E~l~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~g~l~~~ 1225 (1522)
T TIGR00957 1147 FNETLLGVSVIRAFEEQERFIHQSDLKVDENQKAYYPSIVANRWLAVRLECVGNCIVLFAALFAV-ISRHSLSAGLVGLS 1225 (1522)
T ss_pred HHHHhCCcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999988765444433332 23456899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCcccCCCCCCCCCCCcccEEEEEEEEEECCCCCCccccc
Q 000720 1149 ATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGI 1228 (1333)
Q Consensus 1149 l~y~l~l~~~l~~~v~~~~~le~~~~SveRI~~~~~~p~E~~~~~~~~~~~~~wp~~G~I~f~nVsf~Y~~~~p~VLk~I 1228 (1333)
++|++.+...+.++++.++++|+.++|+|||.+|++.|+|++...++..+++.||.+|+|+|+||+|+|+++.++|||||
T Consensus 1226 l~~~~~~~~~l~~l~~~~~~~e~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~~~vL~~i 1305 (1522)
T TIGR00957 1226 VSYSLQVTFYLNWLVRMSSEMETNIVAVERLKEYSETEKEAPWQIQETAPPSGWPPRGRVEFRNYCLRYREDLDLVLRHI 1305 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccCCCCCCCCCCCCcEEEEEEEEEeCCCCcccccce
Confidence 99999999999999999999999999999999999988876533334456678999999999999999988777899999
Q ss_pred eEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCCCChHHHhhcCeEecccccccccchhhhcCCCCC
Q 000720 1229 TCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQ 1308 (1333)
Q Consensus 1229 s~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~i~l~~LRs~isiVpQdp~LF~GTIR~NLdp~~~ 1308 (1333)
||+|+||||||||||||||||||+++|+|+|||++|+|+|||+||+++++++||++|++|||||+||+||||+||||+++
T Consensus 1306 s~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~~~ 1385 (1522)
T TIGR00957 1306 NVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFSQ 1385 (1522)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCccHHHHcCcccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHhCCCCcccccCC
Q 000720 1309 HSDQEIWEVKISKLLTHKSYQCE 1331 (1333)
Q Consensus 1309 ~sDeeI~~aL~~~~L~~~~~~~~ 1331 (1333)
++|||||+||++|||++.+.+.|
T Consensus 1386 ~sdeei~~al~~a~l~~~I~~lp 1408 (1522)
T TIGR00957 1386 YSDEEVWWALELAHLKTFVSALP 1408 (1522)
T ss_pred CCHHHHHHHHHHcCcHHHHhhCc
Confidence 99999999999999998876553
No 5
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=4.1e-169 Score=1705.79 Aligned_cols=1118 Identities=26% Similarity=0.436 Sum_probs=962.4
Q ss_pred CCCcccCChhHHHHHHhHHHHHHhhccCCCCCCCCCCCCCCCcHHHHHHHHHHHHHhhc---CCCCCHHHHHHHHHHHHH
Q 000720 201 ISTFASAGVLSKITFHWLNQLFQRGRIQKLELLHIPPIPQSETANDASSLLEESLRKQK---TDATSLPQVIIHAVWKSL 277 (1333)
Q Consensus 201 ~~p~~~a~~~s~~~f~Wl~pl~~~g~~~~L~~~dl~~l~~~~~~~~~~~~f~~~w~~~~---~~~~~l~~~l~~~~~~~~ 277 (1333)
.+||++||+|||++|||+||++++||+++|+.||||+|+++++++.+.++|++.|+++. .++++|+++++++|++.+
T Consensus 3 ~~pe~~a~~~s~~~F~W~~pl~~~g~~~~L~~~Dl~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~L~~~l~~~~~~~~ 82 (1490)
T TIGR01271 3 RSPVEKANFLSKLFFWWTRPILRKGYRQKLELSDIYQIPSFDSADNLSERLEREWDRELASAKKNPKLLNALRRCFFWRF 82 (1490)
T ss_pred CCccccCCHHHHHHHHHHHHHHHHHhcCCCChhhccCCChHHhHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999998753 245899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 278 ALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSALTVLI 357 (1333)
Q Consensus 278 ~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~~~~rir~~l~~~i 357 (1333)
+..++++++.+++.+++|++++++++|++..+.. ....||.++++++++.++.+++.++++|...++++++|++|+++|
T Consensus 83 ~~~~~~~~~~~~~~~~~P~ll~~li~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~~L~~~i 161 (1490)
T TIGR01271 83 VFYGILLYFGEATKAVQPLLLGRIIASYDPFNAP-EREIAYYLALGLCLLFIVRTLLLHPAIFGLHHLGMQMRIALFSLI 161 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999643321 222389999999999999999999999999999999999999999
Q ss_pred HHHHhccccCCC---ChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 000720 358 YKRSMAIKFAGP---SSGIIINMINVDVERIGDFFLYIHRIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFVMVSNTP 434 (1333)
Q Consensus 358 y~K~L~ls~~~~---~~G~i~nlms~D~~~i~~~~~~~~~~w~~plqi~~~l~lL~~~lG~~a~l~gl~~~~~~~~~~~~ 434 (1333)
|+|.|+++..+. ++|+++|+|++|++++.+++.++|.+|..|+++++++++||.++| +++++|++++++++|++.+
T Consensus 162 y~K~L~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~~~~~~~~~pi~i~~~~~lL~~~~G-~~~l~~l~v~~~~~~~~~~ 240 (1490)
T TIGR01271 162 YKKTLKLSSRVLDKISTGQLVSLLSNNLNKFDEGLALAHFVWIAPLQVILLMGLIWELLE-VNGFCGLGFLILLALFQAC 240 (1490)
T ss_pred HHHHHhCCHHHhcCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 999999986543 789999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 435 LANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIAFLFWASPTLVSV 514 (1333)
Q Consensus 435 ~~~~~~~~~~~~~~~~D~R~~~~~E~L~~Ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~a~~~~~~~~~p~lv~~ 514 (1333)
+++++.++++++|+.+|+|++.++|+|+|||+||+|+||+.|.+++++.|++|++.+++..+..+...++++..|.++++
T Consensus 241 ~~~~~~~~~~~~~~~~d~R~~~~~E~l~~ik~IK~~~~E~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (1490)
T TIGR01271 241 LGQKMMPYRDKRAGKISERLAITSEIIENIQSVKAYCWEEAMEKIIKNIRQDELKLTRKIAYLRYFYSSAFFFSGFFVVF 320 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998888888888889999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCCccEEE
Q 000720 515 ITFGVCILLKTPLTSGAVLSALATFRILQEPIY-NLPELISMIAQTKVSLYRIQEFIKEDNQKKPITEPTSKASDVAIDI 593 (1333)
Q Consensus 515 ~tF~~~~~~~~~Lt~~~vft~lalf~~l~~pl~-~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~~~~~~~~~~~~I~i 593 (1333)
++|++|.+.++ ++++.+||++++|++++.|+. .+|..+..+.++++|++||++||..+|..+... ...+..|++
T Consensus 321 ~~f~~y~~~~~-~~~~~~ft~lal~~lL~~~l~~~lp~~~~~~~~a~~s~~RI~~fL~~~e~~~~~~----~~~~~~i~~ 395 (1490)
T TIGR01271 321 LSVVPYALIKG-IILRRIFTTISYCIVLRMTVTRQFPGAIQTWYDSLGAITKIQDFLCKEEYKTLEY----NLTTTEVEM 395 (1490)
T ss_pred HHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccc----cCCCCceEE
Confidence 99999988754 789999999999999999985 799999999999999999999999877322111 112346999
Q ss_pred eeeEEEcCCccc---------c-----cC------------CCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCC
Q 000720 594 EAGEYAWDAREE---------N-----FK------------KPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGE 646 (1333)
Q Consensus 594 ~~~~fsw~~~~~---------~-----~~------------~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~ 646 (1333)
+|++|+|+...+ . .. ..+++|+| ||++++||+++|+|||||||||||++|+|+
T Consensus 396 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~ 475 (1490)
T TIGR01271 396 VNVTASWDEGIGELFEKIKQNNKARKQPNGDDGLFFSNFSLYVTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGE 475 (1490)
T ss_pred ecceEecCCccccccccccccccccccccccccccccccccccCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 999999964200 0 00 02468999 999999999999999999999999999999
Q ss_pred CcCCCCcEEEECCeEEEEcCCCCCCCCCHHHHhccCCcCCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHH
Q 000720 647 IPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQK 726 (1333)
Q Consensus 647 ~~~~~G~~i~~~g~iayv~Q~~~i~~~Tv~enI~~g~~~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQk 726 (1333)
++|++|++ .++|++|||+|+||++++||+|||+||.++++++|++++++|++.+|++.+|.||.|.+|++|.+||||||
T Consensus 476 ~~~~~G~i-~~~g~iayv~Q~~~l~~~Ti~eNI~~g~~~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqk 554 (1490)
T TIGR01271 476 LEPSEGKI-KHSGRISFSPQTSWIMPGTIKDNIIFGLSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQR 554 (1490)
T ss_pred CCCCCceE-EECCEEEEEeCCCccCCccHHHHHHhccccchHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHH
Confidence 99999996 89999999999999999999999999998888899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhcCCEEEEEeCCeEEEccChHHH
Q 000720 727 QRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDL 806 (1333)
Q Consensus 727 qRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~aD~i~vl~~G~i~~~g~~~~l 806 (1333)
|||+||||+|++|++|||||||||||+++++++++.++.+..+++|+|+|||+++.++.||+|++|++|+|++.|+++++
T Consensus 555 qRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~~~~tvilvtH~~~~~~~ad~ii~l~~g~i~~~g~~~~l 634 (1490)
T TIGR01271 555 ARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTSKLEHLKKADKILLLHEGVCYFYGTFSEL 634 (1490)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCChHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 99999999999999999999999999999999999888777789999999999999988999999999999999999999
Q ss_pred HhhcchHHHHHHHhhh---h---c--------------cc--C-----C-C-------CCCcc-c---------------
Q 000720 807 IADQNSELVRQMKAHR---K---S--------------LD--Q-----V-N-------PPQED-K--------------- 835 (1333)
Q Consensus 807 ~~~~~~~~~~~~~~~~---~---~--------------~~--~-----~-~-------~~~~~-~--------------- 835 (1333)
.. ....+........ + . .+ . . . +..+. .
T Consensus 635 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 713 (1490)
T TIGR01271 635 QA-KRPDFSSLLLGLEAFDNFSAERRNSILTETLRRVSIDGDSTVFSGPETIKQSFKQPPPEFAEKRKQSIILNPIASAR 713 (1490)
T ss_pred Hh-cChHHHHHHhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 76 3333333321000 0 0 00 0 0 0 00000 0
Q ss_pred ---------------c-cccC-CcC-------C-------cchhh---------------------hh---c---c-C--
Q 000720 836 ---------------C-LSRV-PCQ-------M-------SQITE---------------------ER---F---A-R-- 854 (1333)
Q Consensus 836 ---------------~-~~~~-~~~-------~-------~~~~~---------------------~~---~---~-~-- 854 (1333)
. .... +.. + ..+.. .. . . .
T Consensus 714 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 793 (1490)
T TIGR01271 714 KFSFVQMGPQKAQATTIEDAVREPSERKFSLVPEDEQGEESLPRGNQYHHGLQHQAQRRQSVLQLMTHSNRGENRREQLQ 793 (1490)
T ss_pred ccccccccccccccccccchhcccccccccccccccccccccccccccccccccccccccchhhcccccccccccccccc
Confidence 0 0000 000 0 00000 00 0 0 0
Q ss_pred ----------C-----CC--------cCC-----------C--CCC-ccccccccCcchHHHHHHHHHHhccchHHHHHH
Q 000720 855 ----------P-----IS--------CGE-----------F--SGR-SQDEDTELGRVKWTVYSAFITLVYKGALVPVIL 897 (1333)
Q Consensus 855 ----------~-----~~--------~~~-----------~--~~~-~~~e~~~~g~v~~~~y~~y~~~~~~~~~~~~~l 897 (1333)
+ .. .++ . ... .++|+++.|.++|++|+.|+++.+++.++++++
T Consensus 794 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~vY~~Y~~~~g~~~~~~~~~ 873 (1490)
T TIGR01271 794 TSFRKKSSITQQNELASELDIYSRRLSKDSVYEISEEINEEDLKECFADERENVFETTTWNTYLRYITTNRNLVFVLIFC 873 (1490)
T ss_pred cccccccccccccccccccccccccccccccccccccchhhhhhhhhhHHHHhhcCcccHHHHHHHHHhcCcHHHHHHHH
Confidence 0 00 000 0 001 344667889999999999999876555555555
Q ss_pred HHHHHHHHHHHhhHHHHHHhcccc--------c-c-----------c-chhhH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 898 LCQVLFQALQMGSNYWIAWATDEK--------R-K-----------V-SREQL-IGVFIFLSGGSSFFILGRAVLLATIA 955 (1333)
Q Consensus 898 l~~~l~~~~~~~~~~wl~~~~~~~--------~-~-----------~-~~~~~-l~vy~~l~~~~~i~~~~~~~~~~~~~ 955 (1333)
++.++.+++..+.++|+.+|.+.. . . . ...+| +++|++++++..++.+++.+++...+
T Consensus 874 ~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 953 (1490)
T TIGR01271 874 LVIFLAEVAASLLGLWLITDNPSAPNYVDQQHANASSPDVQKPVIITPTSAYYIFYIYVGTADSVLALGFFRGLPLVHTL 953 (1490)
T ss_pred HHHHHHHHHHHHhhHHHHhcccccccccccccccCCCccccccccccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666778899999999998776311 0 0 0 11223 45566666566677888999999999
Q ss_pred HHHHHHHHHHHHHHHhcCccccccccCcchhHHHHhccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 000720 956 IKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLV 1035 (1333)
Q Consensus 956 ~~~s~~L~~~ll~~il~ap~~fFd~tp~GrIlnRfs~Di~~vd~~l~~~l~~~~~~~~~~l~~ivv~~~~~~~l~lv~ip 1035 (1333)
.++++++|++++++++++|++|||++|+|+|+|||++|++.+|+.+|..+..++..++.+++.++++++.+|+++++++|
T Consensus 954 ~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~i~~l~~i~~~~p~l~l~~~~ 1033 (1490)
T TIGR01271 954 LTVSKRLHEQMLHSVLQAPMAVLNTMKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVLGAIFVVSVLQPYIFIAAIP 1033 (1490)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998888889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 1036 ILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCL 1115 (1333)
Q Consensus 1036 l~~~~~~~~~~y~~~srel~rl~~~~~spl~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~ 1115 (1333)
+++++++++++|.+++|+++|++..+++|+++|+.|+++|+.|||+|+++++|.+++.+..|.+++.++.....++|+..
T Consensus 1034 l~~~~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~ 1113 (1490)
T TIGR01271 1034 VAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKALNLHTANWFLYLSTLRWFQM 1113 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCcccC-
Q 000720 1116 RINLLFNFAFFLVLIILVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIK- 1194 (1333)
Q Consensus 1116 rl~ll~~~~~~~~~~~~~~~~~~~~~~g~~gl~l~y~l~l~~~l~~~v~~~~~le~~~~SveRI~~~~~~p~E~~~~~~- 1194 (1333)
++++++.+.+..++++.+.. ...++|.+|++++|++.+...+.++++.++++|+.+.|+|||.+|++.|+|++...+
T Consensus 1114 ~~~~i~~~~~~~~~~l~~~~--~~~~~g~~g~~l~~~~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~e~~~~~~~ 1191 (1490)
T TIGR01271 1114 RIDIIFVFFFIAVTFIAIGT--NQDGEGEVGIILTLAMNILSTLQWAVNSSIDVDGLMRSVSRVFKFIDLPQEEPRPSGG 1191 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHH--hcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccc
Confidence 99998775544333322221 235678899999999999999999999999999999999999999998887542111
Q ss_pred -------------CCCCCCCCCCcccEEEEEEEEEECCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCC
Q 000720 1195 -------------NSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEP 1261 (1333)
Q Consensus 1195 -------------~~~~~~~wp~~G~I~f~nVsf~Y~~~~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep 1261 (1333)
...+++.||..|.|+|+||+|+|+++.|+||+|+||+|+||||||||||||||||||+++|+|+++
T Consensus 1192 ~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~- 1270 (1490)
T TIGR01271 1192 GGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS- 1270 (1490)
T ss_pred ccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-
Confidence 123456799999999999999999877889999999999999999999999999999999999998
Q ss_pred CCCeEEEcCEeCCCCChHHHhhcCeEecccccccccchhhhcCCCCCCCHHHHHHHHHhCCCCcccccC
Q 000720 1262 SGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVKISKLLTHKSYQC 1330 (1333)
Q Consensus 1262 ~~G~I~IDGvdI~~i~l~~LRs~isiVpQdp~LF~GTIR~NLdp~~~~sDeeI~~aL~~~~L~~~~~~~ 1330 (1333)
++|+|+|||+||+++++++||++|++|||||+||+||||+||||+++++|+|||+||++|+|++.+.+.
T Consensus 1271 ~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~~~tdeei~~aL~~~~L~~~i~~l 1339 (1490)
T TIGR01271 1271 TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQF 1339 (1490)
T ss_pred CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCcccCCCHHHHHHHHHHCCCHHHHHhC
Confidence 799999999999999999999999999999999999999999999999999999999999999876654
No 6
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=5.1e-160 Score=1616.66 Aligned_cols=1126 Identities=27% Similarity=0.456 Sum_probs=960.8
Q ss_pred cCCCCcccCChhHHHHHHhHHHHHHhhccCCCCCCCCCCCCCCCcHHHHHHHHHHHHHhhc-------------------
Q 000720 199 KNISTFASAGVLSKITFHWLNQLFQRGRIQKLELLHIPPIPQSETANDASSLLEESLRKQK------------------- 259 (1333)
Q Consensus 199 ~~~~p~~~a~~~s~~~f~Wl~pl~~~g~~~~L~~~dl~~l~~~~~~~~~~~~f~~~w~~~~------------------- 259 (1333)
..+.||++|||+.++++.|++|++.+..|..|+.+|+|+...+.++-++..++.+..+++.
T Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (1560)
T PTZ00243 57 YTPVPEETASWFQRYYYGWVYEYVLLASKEQLTEEDLPPPTRDVRAHECGLRLSRAVQAAMYERNAWNCMVGAEVVSTLD 136 (1560)
T ss_pred CCCCccchhhHHHHHHHHHHHHHHHHHHHhhcccccCCCCcchhhHHHHhHHHHHHHHHHHHhhcccccccccEEEeecc
Confidence 4567999999999999999999999999999999999999999998777666554332210
Q ss_pred ----------------------------------------C---------------------------------------
Q 000720 260 ----------------------------------------T--------------------------------------- 260 (1333)
Q Consensus 260 ----------------------------------------~--------------------------------------- 260 (1333)
+
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (1560)
T PTZ00243 137 ASSRGVLRWVGVPQQGGYTRMMAGVEWSVPPALRTAARSDDSGASPFFNGVAHGEHLFTPEQSNMSTLEEPTDVRLYLSS 216 (1560)
T ss_pred ccccceEEeecccccCCCcceeeeeeeccCchhhhcccCCCCCCccccccccccccccCcccCCceeeeeeheeeEeecc
Confidence 0
Q ss_pred -------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHH
Q 000720 261 -------------DATSLPQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFA 327 (1333)
Q Consensus 261 -------------~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~g~~l~~~l~~~ 327 (1333)
+..+|+++++++||+.++..++++++.+++.+++|++++.+++|+++++. .+..|++++++++++
T Consensus 217 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~l~~P~ll~~~v~~l~~~~~--~~~~g~~l~~~l~~~ 294 (1560)
T PTZ00243 217 TGSVVRPGPPPTPKRLSLLRTLFAALPYYVWWQIPFKLLSDVCTLTLPVLLKYFVKFLDADNA--TWGRGLGLVLTLFLT 294 (1560)
T ss_pred cccccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc--chhHHHHHHHHHHHH
Confidence 00369999999999999999999999999999999999999999976542 344488899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCC-----ChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 000720 328 KTVESLTQRQWYFGANRIGIRVRSALTVLIYKRSMAIKFAGP-----SSGIIINMINVDVERIGDFFLYIHRIWLLPVQV 402 (1333)
Q Consensus 328 ~~~~~l~~~~~~~~~~~~~~rir~~l~~~iy~K~L~ls~~~~-----~~G~i~nlms~D~~~i~~~~~~~~~~w~~plqi 402 (1333)
.++.+++.++++|...+.+.++|++|.+.+|+|+++++..+. ++|+++|+|++|++++.+++.++|.+|..|+|+
T Consensus 295 ~~~~~~~~~~~~~~~~r~~~~~r~~L~~~if~K~l~ls~~~~~~~~~~~G~i~nl~s~Dv~~i~~~~~~~~~l~~~Pl~l 374 (1560)
T PTZ00243 295 QLIQSVCLHRFYYISIRCGLQYRSALNALIFEKCFTISSKSLAQPDMNTGRIINMMSTDVERINSFMQYCMYLWSSPMVL 374 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999987432 789999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchHHHHHHHHHH
Q 000720 403 FLALVILYKNLGAAPAFAALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLR 482 (1333)
Q Consensus 403 ~~~l~lL~~~lG~~a~l~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~R~~~~~E~L~~Ir~IK~~~wE~~f~~~i~~ 482 (1333)
++++++||..+| +++++|++++++++|++.++++++.++++++|+++|+|++.++|++++||+||+||||+.|.++|++
T Consensus 375 i~~~~lL~~~lG-~~al~gv~vl~v~~pl~~~~~k~~~~~~~~~~~~~D~Ri~~~~E~l~gIr~IK~~~wE~~f~~ri~~ 453 (1560)
T PTZ00243 375 LLSILLLSRLVG-WCALMAVAVLLVTLPLNGAIMKHQMAARRKIAKAADARVKATNEFFSGIRIAKFMAWEPCFVANIED 453 (1560)
T ss_pred HHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 483 LREIERDSLKKYLYTCSAIAFLFWASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVS 562 (1333)
Q Consensus 483 ~R~~E~~~l~~~~~~~a~~~~~~~~~p~lv~~~tF~~~~~~~~~Lt~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS 562 (1333)
.|++|++.+++..+..++..++.+.+|.++.+++|++|++.|++||++.+||++++|++++.|+..+|..++.+.++++|
T Consensus 454 ~R~~El~~l~~~~~~~~~~~~~~~~~p~l~~~~~f~~y~~~g~~Lt~~~vft~laL~~~L~~Pl~~lp~~~~~~~~a~vS 533 (1560)
T PTZ00243 454 KRARELRYLRDVQLARVATSFVNNATPTLMIAVVFTVYYLLGHELTPEVVFPTIALLGVLRMPFFMIPWVFTTVLQFLVS 533 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcccCC-CCCC----CC-----CCC------------------------------------------------
Q 000720 563 LYRIQEFIKEDNQ-KKPI----TE-----PTS------------------------------------------------ 584 (1333)
Q Consensus 563 ~~RI~~fL~~~e~-~~~~----~~-----~~~------------------------------------------------ 584 (1333)
++||++||+.+|. .+.. +. ...
T Consensus 534 ~~RI~~fL~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 613 (1560)
T PTZ00243 534 IKRISTFLECDNATCSTVQDMEEYWREQREHSTACQLAAVLENVDVTAFVPVKLPRAPKVKTSLLSRALRMLCCEQCRPT 613 (1560)
T ss_pred HHHHHHHHcCccccccccccchhhcccccccccccccccccccccccccccccccccccccccccccchhhccccccccc
Confidence 9999999987661 1000 00 000
Q ss_pred -CCCCccEEEeeeEEEcCCccc-------------------------------cc-CCCcccccC-CeEeeCCcEEEEEC
Q 000720 585 -KASDVAIDIEAGEYAWDAREE-------------------------------NF-KKPTIKLTD-KMKIMKGSKVAVCG 630 (1333)
Q Consensus 585 -~~~~~~I~i~~~~fsw~~~~~-------------------------------~~-~~~~~~L~~-nl~i~~Ge~~~ivG 630 (1333)
......+.++|++|+|+.+.. .+ ..++++|+| ||++++|++++|+|
T Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~isl~i~~G~~~~IiG 693 (1560)
T PTZ00243 614 KRHPSPSVVVEDTDYGSPSSASRHIVEGGTGGGHEATPTSERSAKTPKMKTDDFFELEPKVLLRDVSVSVPRGKLTVVLG 693 (1560)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccCCceeEeeeEEEECCCCEEEEEC
Confidence 001124566777777653110 00 012457999 99999999999999
Q ss_pred CCCCChhHHHHHHhCCCcCCCCcEEEECCeEEEEcCCCCCCCCCHHHHhccCCcCCHHHHHHHHHHcccchHHHhhcCCC
Q 000720 631 SVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGD 710 (1333)
Q Consensus 631 ~~GsGKSTLl~~ilG~~~~~~G~~i~~~g~iayv~Q~~~i~~~Tv~enI~~g~~~~~~~~~~v~~~~~l~~d~~~~~~g~ 710 (1333)
||||||||||++|+|+++|++|++ .+++++||+||+||++++||+|||.|+.+++.++|++++++|++.+|++.+|+|+
T Consensus 694 ~nGsGKSTLL~~i~G~~~~~~G~i-~~~~~i~yv~Q~~~l~~~Tv~enI~~~~~~~~~~~~~~~~~~~l~~~l~~l~~g~ 772 (1560)
T PTZ00243 694 ATGSGKSTLLQSLLSQFEISEGRV-WAERSIAYVPQQAWIMNATVRGNILFFDEEDAARLADAVRVSQLEADLAQLGGGL 772 (1560)
T ss_pred CCCCcHHHHHHHHhcCCCCCCcEE-EECCeEEEEeCCCccCCCcHHHHHHcCChhhHHHHHHHHHHhhhHHHHHHhhccc
Confidence 999999999999999999999996 7889999999999999999999999998888889999999999999999999999
Q ss_pred ccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhcCCEEE
Q 000720 711 LSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVL 790 (1333)
Q Consensus 711 ~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~aD~i~ 790 (1333)
+|.+|++|.+|||||||||+||||+|++|++||||||||+||++++++++++++.+..+++|+|++||+++.++.||+|+
T Consensus 773 ~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~~~ad~ii 852 (1560)
T PTZ00243 773 ETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVPRADYVV 852 (1560)
T ss_pred hHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEE
Confidence 99999999999999999999999999999999999999999999999999988776667999999999999999999999
Q ss_pred EEeCCeEEEccChHHHHhhcchHHHHHHHhhhhcccCCC---CCCcccccccCC--cCCcchhhhhcc--CC---CCcCC
Q 000720 791 VMKDGKIEQSGKYEDLIADQNSELVRQMKAHRKSLDQVN---PPQEDKCLSRVP--CQMSQITEERFA--RP---ISCGE 860 (1333)
Q Consensus 791 vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~--~~~~~~~~~~~~--~~---~~~~~ 860 (1333)
+|++|++++.|+++++.++ . .+..+........+..+ ..+......... ............ .. ...+.
T Consensus 853 ~l~~G~i~~~G~~~~l~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 930 (1560)
T PTZ00243 853 ALGDGRVEFSGSSADFMRT-S-LYATLAAELKENKDSKEGDADAEVAEVDAAPGGAVDHEPPVAKQEGNAEGGDGAALDA 930 (1560)
T ss_pred EEECCEEEEecCHHHHHhC-h-HHHHHHHhhccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999999862 2 23333322111100000 000000000000 000000000000 00 00001
Q ss_pred CCCC-ccccccccCcchHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhHHHHHHhcccccccchhhHHHHHHHHHHH
Q 000720 861 FSGR-SQDEDTELGRVKWTVYSAFITLVYKGALVPVILLCQVLFQALQMGSNYWIAWATDEKRKVSREQLIGVFIFLSGG 939 (1333)
Q Consensus 861 ~~~~-~~~e~~~~g~v~~~~y~~y~~~~~~~~~~~~~ll~~~l~~~~~~~~~~wl~~~~~~~~~~~~~~~l~vy~~l~~~ 939 (1333)
..++ .++|+++.|.++|++|+.|+++.++...+.+++++.++.+++..++++|+++|++.....+...|+++|++++++
T Consensus 931 ~~~~l~~~e~~~~g~v~~~~y~~Y~~~~g~~~~~~~~l~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~l~~y~~~~~~ 1010 (1560)
T PTZ00243 931 AAGRLMTREEKASGSVPWSTYVAYLRFCGGLHAAGFVLATFAVTELVTVSSGVWLSMWSTRSFKLSAATYLYVYLGIVLL 1010 (1560)
T ss_pred ccchhhhHHHHhcCcccHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCcccHHHHHHHHHHH
Confidence 1122 466778889999999999999886655555555555667788889999999998644334456788899988888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCcchhHHHHhccHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 000720 940 SSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSII 1019 (1333)
Q Consensus 940 ~~i~~~~~~~~~~~~~~~~s~~L~~~ll~~il~ap~~fFd~tp~GrIlnRfs~Di~~vd~~l~~~l~~~~~~~~~~l~~i 1019 (1333)
..++.+++.+.....+.++++++|++++++++++|++|||++|+|+|+|||++|++.+|+.++..+..++..++.+++.+
T Consensus 1011 ~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ffd~~~~G~ilnR~s~Di~~id~~l~~~l~~~~~~~~~~i~~l 1090 (1560)
T PTZ00243 1011 GTFSVPLRFFLSYEAMRRGSRNMHRDLLRSVSRGTMSFFDTTPLGRILNRFSRDIDILDNTLPMSYLYLLQCLFSICSSI 1090 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhccCCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88887788777778888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHH
Q 000720 1020 ILMSQAAWQVFPLFLVILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDY 1099 (1333)
Q Consensus 1020 vv~~~~~~~l~lv~ipl~~~~~~~~~~y~~~srel~rl~~~~~spl~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~ 1099 (1333)
+++++.+|.++++++|+.++++++.++|.+.+|+++|.+..+++|++++++|+++|+.|||+|+.|++|.+++.+.+|.+
T Consensus 1091 i~~~~~~p~~~~~~i~~~~~~~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~~~~~~~~~~~d~~ 1170 (1560)
T PTZ00243 1091 LVTSASQPFVLVALVPCGYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQEALRRLDVV 1170 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHHHHHHHHHHHHHHH
Confidence 99999999888888888888888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 000720 1100 SCVTFHNCGTMEWLCLRINLLFNFAFFLVLIILV---TLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISV 1176 (1333)
Q Consensus 1100 ~~~~~~~~~~~~wl~~rl~ll~~~~~~~~~~~~~---~~~~~~~~~g~~gl~l~y~l~l~~~l~~~v~~~~~le~~~~Sv 1176 (1333)
.+..+.....++|+..+++++++++.++++++++ ....+..++|.++++++|+..+...+.++++.+.++|+.|+|+
T Consensus 1171 ~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~a~~l~~~l~~l~~~~~~le~~~~s~ 1250 (1560)
T PTZ00243 1171 YSCSYLENVANRWLGVRVEFLSNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQTTATLNWLVRQVATVEADMNSV 1250 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998876544433322 2223446789999999999999999999999999999999999
Q ss_pred HHHHHhhc-CCCCCCcc-----------------------cCCCCCC---CCCCCcccEEEEEEEEEECCCCCCccccce
Q 000720 1177 ERILQFTN-IPSEAPLV-----------------------IKNSRPS---PEWPSSGKIELENLLVQYNPTLPMVLKGIT 1229 (1333)
Q Consensus 1177 eRI~~~~~-~p~E~~~~-----------------------~~~~~~~---~~wp~~G~I~f~nVsf~Y~~~~p~VLk~Is 1229 (1333)
|||.+|++ .|+|+... .++..++ +.||..|.|+|+||+|+|+++.|+||+|||
T Consensus 1251 eRi~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~~~~vL~~vs 1330 (1560)
T PTZ00243 1251 ERLLYYTDEVPHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYREGLPLVLRGVS 1330 (1560)
T ss_pred HHHHHHHhcCCccccccccccccccccccccccccccccccccCCCcccCCCCCCCCeEEEEEEEEEeCCCCCceeecce
Confidence 99999996 44442110 0011122 235667999999999999988788999999
Q ss_pred EEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCCCChHHHhhcCeEecccccccccchhhhcCCCCCC
Q 000720 1230 CTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQH 1309 (1333)
Q Consensus 1230 ~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~i~l~~LRs~isiVpQdp~LF~GTIR~NLdp~~~~ 1309 (1333)
|+|+||||||||||||||||||+++|+|+|+|++|+|+|||+||+++++++||++|++|||||+||+||||+||||++++
T Consensus 1331 f~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp~~~~ 1410 (1560)
T PTZ00243 1331 FRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFLEA 1410 (1560)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHHHhCcccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHhCCCCcccccC
Q 000720 1310 SDQEIWEVKISKLLTHKSYQC 1330 (1333)
Q Consensus 1310 sDeeI~~aL~~~~L~~~~~~~ 1330 (1333)
+|+|||+||++|||++.+.+.
T Consensus 1411 sdeeI~~Al~~a~l~~~I~~l 1431 (1560)
T PTZ00243 1411 SSAEVWAALELVGLRERVASE 1431 (1560)
T ss_pred CHHHHHHHHHHCCChHHHhhC
Confidence 999999999999999876554
No 7
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2.9e-114 Score=1080.97 Aligned_cols=1033 Identities=19% Similarity=0.217 Sum_probs=754.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhcCCC--CC--CchhHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Q 000720 273 VWKSLALNAAFAGVNTIASYIGPFLI---TNFVSFLSGKH--DH--SSYHYGLVL---ASVFLFAKTVESLTQRQWYFGA 342 (1333)
Q Consensus 273 ~~~~~~~~~~~~l~~~~~~~~~P~ll---~~li~~~~~~~--~~--~~~~~g~~l---~~~l~~~~~~~~l~~~~~~~~~ 342 (1333)
-+.++++..+-.+...+....+|++. .++.+.+-... .. ...++++.+ .++.+++.+ +...+|.+.+
T Consensus 23 ~~~D~~Lm~~G~i~a~~~G~~~P~~~ii~g~~~~~~~~~~~~~~~~~~~~~~l~~~~lg~~~~~~~~---~q~~c~~~~g 99 (1228)
T KOG0055|consen 23 DRFDYLLMILGSIGAIAHGLGLPLMSIIFGKLTDVLGDNTNKIASSEVSKVALYFVYLGVGVFISGF---IQVSCWMRTG 99 (1228)
T ss_pred chhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 35555555555555556666677653 34444432222 10 011223322 223333333 3446899999
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccCCCChHHHHHHHHhhHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 000720 343 NRIGIRVRSALTVLIYKRSMAIKFAGPSSGIIINMINVDVERIGDFF-----LYIHRIWLLPVQVFLALVILYKNLGAAP 417 (1333)
Q Consensus 343 ~~~~~rir~~l~~~iy~K~L~ls~~~~~~G~i~nlms~D~~~i~~~~-----~~~~~~w~~plqi~~~l~lL~~~lG~~a 417 (1333)
.|...|+|..+..++.+|...+.+...+ |++++-|+.|+++|.+++ .++|.+-....-++++++. +|..
T Consensus 100 eRq~~riR~~yl~~iLrQdi~~fD~~~~-g~~~~~l~~d~~~I~d~~geKvg~~i~~~~~fi~g~ii~F~~-----~W~L 173 (1228)
T KOG0055|consen 100 ERQTARIRSKYLKAILRQDIGWFDTNST-GELVTRLSDDIELIQDAIGEKVGNFIQLLATFIAGFVIGFYY-----GWKL 173 (1228)
T ss_pred HHHHHHHHHHHHHHHHhCccceeecccc-cceEEEecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHH
Confidence 9999999999999999999877665544 999999999999999875 3555555444444444443 4566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchHHHHHHHHHHHHHHHHH-HHHHHHH
Q 000720 418 AFAALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERD-SLKKYLY 496 (1333)
Q Consensus 418 ~l~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~R~~~~~E~L~~Ir~IK~~~wE~~f~~~i~~~R~~E~~-~l~~~~~ 496 (1333)
++.++.+..++......+++.+.+...+..++..+.-+++.|++.+||+|-.|+-|+.-.++..+.=+.-.+ .+|+..+
T Consensus 174 tlv~l~~~Pli~~~g~~~a~~~~~~t~ke~~~ya~Ag~iaEe~i~~iRTV~af~gq~~e~~ry~~~L~~~~k~gi~~g~~ 253 (1228)
T KOG0055|consen 174 TLVMLSFIPLIAIAGGLLARFLSKLTEKEQEAYAKAGSIAEEVISSIRTVYAFNGEKKEIERYSKALENALKFGIKKGLF 253 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777788888998888888888888899999999999999999999998877666554332223 2333333
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Q 000720 497 TCSAIAFL-FWASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQ 575 (1333)
Q Consensus 497 ~~a~~~~~-~~~~p~lv~~~tF~~~~~~~~~Lt~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~ 575 (1333)
......+. ++.-......++||..++..+..++++||+++...-+....|.+..+.++.+.+|+++..+|.+-++..++
T Consensus 254 ~G~~~G~~~~~~~~~~a~~~WyG~~li~~~~~~~g~v~~v~~~vl~g~~sLgqa~p~l~~f~~a~~aa~~I~~~i~~~~~ 333 (1228)
T KOG0055|consen 254 KGLGLGFTFFLLFASYALAFWYGSTLILNGGYNGGDVITVFFSVLIGGMSLGQASPHLSAFAKARAAAYRIFETIDRKPS 333 (1228)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeehhhhhhhhhccccchHHHhccccchHHHHHHhcCCCC
Confidence 32222222 22222334467888777778889999999999888888899999999999999999999999999988763
Q ss_pred CCCC--CCCCCCCCCccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCC
Q 000720 576 KKPI--TEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISG 652 (1333)
Q Consensus 576 ~~~~--~~~~~~~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G 652 (1333)
.+.. +.......++.|+++|++|+||++ ++.++|++ ||+|++|+.+|||||+||||||++++|.++++|++|
T Consensus 334 i~~~~~~~~~~~~~~g~ief~nV~FsYPsR-----pdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G 408 (1228)
T KOG0055|consen 334 IDPYSKGGRVLSSIKGEIEFRNVCFSYPSR-----PDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSG 408 (1228)
T ss_pred CCcccccCCcccccccceEEEEEEecCCCC-----CcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCc
Confidence 2221 222333456789999999999998 77899999 999999999999999999999999999999999999
Q ss_pred cEEEECC-------------eEEEEcCCCCCCCCCHHHHhccCCcC-CHHHHHHHHHHcccchHHHhhcCCCccccCCCC
Q 000720 653 AAIKVHG-------------KKAYVPQSSWIQTGTIRENILFGKDM-RQSFYEEVLEGCALNQDIEMWADGDLSVVGERG 718 (1333)
Q Consensus 653 ~~i~~~g-------------~iayv~Q~~~i~~~Tv~enI~~g~~~-~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g 718 (1333)
++ .++| ++|.|+|+|.+|++||+|||.+|++- ..+...++.+.....+.+..+|+|.+|.+||+|
T Consensus 409 ~V-~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g 487 (1228)
T KOG0055|consen 409 EV-LIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERG 487 (1228)
T ss_pred eE-EEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCC
Confidence 97 7776 47999999999999999999999864 344455555555556678899999999999999
Q ss_pred CCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhcCCEEEEEeCCeEE
Q 000720 719 INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIE 798 (1333)
Q Consensus 719 ~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~aD~i~vl~~G~i~ 798 (1333)
.+|||||||||||||||.+||+||||||||||||++. +++.++.++...+|+|.|+|+|+++.+++||+|++|++|+|+
T Consensus 488 ~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~s-e~~Vq~ALd~~~~grTTivVaHRLStIrnaD~I~v~~~G~Iv 566 (1228)
T KOG0055|consen 488 VQLSGGQKQRIAIARALVRNPKILLLDEATSALDAES-ERVVQEALDKASKGRTTIVVAHRLSTIRNADKIAVMEEGKIV 566 (1228)
T ss_pred CCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHH-HHHHHHHHHHhhcCCeEEEEeeehhhhhccCEEEEEECCEEE
Confidence 9999999999999999999999999999999999987 556778888889999999999999999999999999999999
Q ss_pred EccChHHHHhhcchHHHHHHHhhhhcccCCC-CCCccccc-ccCC--cCCcchhhhhcc-CCCCc-CCCCCC-ccccccc
Q 000720 799 QSGKYEDLIADQNSELVRQMKAHRKSLDQVN-PPQEDKCL-SRVP--CQMSQITEERFA-RPISC-GEFSGR-SQDEDTE 871 (1333)
Q Consensus 799 ~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~--~~~~~~~~~~~~-~~~~~-~~~~~~-~~~e~~~ 871 (1333)
+.|+++||+++. +.+.++++.+........ +.+++... ...+ .+.......... ..... .+..++ .++...+
T Consensus 567 E~G~h~ELi~~~-G~Y~~lv~~Q~~~~~~~~~~~~~~~~~~~~~s~~~s~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 645 (1228)
T KOG0055|consen 567 EQGTHDELIALG-GIYSSLVRLQELEKAAEDEEEEESLKEERSRSLKSSSSSPSLSRGSNRSNLLSVKPEGEDPEEPVSE 645 (1228)
T ss_pred EecCHHHHHhcc-chHHHHHHHHhhhhhhhccccccchhhhhhhccccccccccccCCcccccccccccccccccccccc
Confidence 999999999954 888888877644322111 00000000 0000 000000000000 00000 000000 0000000
Q ss_pred cCcchHHHHHHHHHHhc-cchHHHHHHHHHHHHHHHHHhhHHHHHHhc----cccc---ccchhhHHHHHHHHHHHHHHH
Q 000720 872 LGRVKWTVYSAFITLVY-KGALVPVILLCQVLFQALQMGSNYWIAWAT----DEKR---KVSREQLIGVFIFLSGGSSFF 943 (1333)
Q Consensus 872 ~g~v~~~~y~~y~~~~~-~~~~~~~~ll~~~l~~~~~~~~~~wl~~~~----~~~~---~~~~~~~l~vy~~l~~~~~i~ 943 (1333)
.. ....+++.++... .|.++++..++.++..+....-.+.+++.. ...+ ......|..+|+++++++.++
T Consensus 646 ~~--~~~s~~~i~k~~~pe~~~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~~~~~~~~~~~~~al~f~~l~~~~~i~ 723 (1228)
T KOG0055|consen 646 ED--EKVSFWRIFKLNKPEWPYLLLGSLGAAIRGATYPLFAYVFSQVLEAFYPPDDDELKREVRAWALIFLGLGIVSGIT 723 (1228)
T ss_pred cc--ccccHHHHHHhccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 1122334443332 233333334444443333222222222211 1111 112335889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccc--cCcchhHHHHhccHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 000720 944 ILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDS--TPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIIL 1021 (1333)
Q Consensus 944 ~~~~~~~~~~~~~~~s~~L~~~ll~~il~ap~~fFd~--tp~GrIlnRfs~Di~~vd~~l~~~l~~~~~~~~~~l~~ivv 1021 (1333)
.+++.+++.++|.+..+++|.++|+++++++++|||. +. |+|.+|+++|...+...+...+..++.++.+++..+++
T Consensus 724 ~~~q~~~f~~~ge~Lt~R~R~~~F~~ll~qd~~wFD~~~ns-g~l~~RLa~Da~~vr~~v~~rl~~vv~~~~~~~~~iii 802 (1228)
T KOG0055|consen 724 NFLQHYFFGIAGEKLTKRLRSMMFRALLRQEVGWFDDPENS-GALSSRLATDASNVRAAVGDRLSLVVQNIAAVIIGIII 802 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccc-hHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999996 45 99999999999999999999999999999999999999
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHHH
Q 000720 1022 MSQAAWQVFPLFLVILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSC 1101 (1333)
Q Consensus 1022 ~~~~~~~l~lv~ipl~~~~~~~~~~y~~~srel~rl~~~~~spl~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~ 1101 (1333)
.++.+|+++++++.+.|+++.....+.+......+.+............|++++++||++|+.|++|.+.|.+.++...+
T Consensus 803 af~~~W~lalv~la~~Pll~~~~~~~~~~~~~~~~~~~~~~~ea~~iA~eai~NIrTV~al~~e~~~~~~y~~~l~~p~~ 882 (1228)
T KOG0055|consen 803 AFIYGWRLALVVLATFPLLILSGYLQKKFLKGFSKDDKKAYEEASKIAIEAVSNIRTVAALCAEEKFMELYKEELEKPRK 882 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 99999999988776666665554444444444444455555566788999999999999999999999999999998777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH-hccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 000720 1102 VTFHNCGTMEWLCLRINLLFNF---AFFLVLIILV-TLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVE 1177 (1333)
Q Consensus 1102 ~~~~~~~~~~wl~~rl~ll~~~---~~~~~~~~~~-~~~~~~~~~g~~gl~l~y~l~l~~~l~~~v~~~~~le~~~~Sve 1177 (1333)
..++... |-++...+-.++ ..+++..++. +...+..++..+-.++.-...-...+........++-+...|+.
T Consensus 883 ~~~~~~~---i~gl~f~~sqs~~~~~~A~~f~~G~~Li~~g~~~~~~~~~vf~~l~~ta~~~~~~~s~~Pd~~ka~~Aa~ 959 (1228)
T KOG0055|consen 883 SSFKRGL---ISGLGFGFSQSLLFFVYALSFWYGARLISNGEMTFEDVFRVFMALSFTAMALGQASSYAPDISKAKIAAG 959 (1228)
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHH
Confidence 6665433 333333332222 2223333322 23445566654433332222222334445566778888999999
Q ss_pred HHHHhhcCCCCCCcccCCCCCCCCCCCcccEEEEEEEEEEC--CCCCCccccceEEecCCcEEEEECCCCccHHHHHHHH
Q 000720 1178 RILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQYN--PTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQAL 1255 (1333)
Q Consensus 1178 RI~~~~~~p~E~~~~~~~~~~~~~wp~~G~I~f~nVsf~Y~--~~~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL 1255 (1333)
+|+++++.+++-+...+. .....+.+|+|+|+||+|+|+ |+. +||+|+|++|++||+||+||+|||||||++++|
T Consensus 960 ~iF~i~dr~~~i~~~~~~--~~~~~~~~G~I~~~~V~F~YPsRP~~-~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LL 1036 (1228)
T KOG0055|consen 960 SIFEILDRKPTIDPDSTS--GGKLPNVKGDIEFRNVSFAYPTRPDV-PVLNNLSLSIRAGQTVALVGPSGSGKSTVISLL 1036 (1228)
T ss_pred HHHHHhcCCCCCCCCCCC--CCccccceeEEEEeeeEeeCCCCCCc-hhhcCCcEEecCCCEEEEECCCCCCHHHHHHHH
Confidence 999999876532211111 111123589999999999994 554 499999999999999999999999999999999
Q ss_pred hcccCCCCCeEEEcCEeCCCCChHHHhhcCeEecccccccccchhhhcCCC-CCCCHHHHHHHHHhCCCCcccccCC
Q 000720 1256 FRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPL-EQHSDQEIWEVKISKLLTHKSYQCE 1331 (1333)
Q Consensus 1256 ~Rl~ep~~G~I~IDGvdI~~i~l~~LRs~isiVpQdp~LF~GTIR~NLdp~-~~~sDeeI~~aL~~~~L~~~~~~~~ 1331 (1333)
.|||||++|.|.|||+||+++++++||++|++|.|||+||++||||||.++ .+.|.+||.+|++.++..+.+.+.|
T Consensus 1037 eRfYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP 1113 (1228)
T KOG0055|consen 1037 ERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLP 1113 (1228)
T ss_pred HHhcCCCCCeEEECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCc
Confidence 999999999999999999999999999999999999999999999999988 4579999999999999988776655
No 8
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=3.9e-104 Score=1063.35 Aligned_cols=1050 Identities=15% Similarity=0.121 Sum_probs=727.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 265 LPQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANR 344 (1333)
Q Consensus 265 l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~ 344 (1333)
+++...+.+++.++++.++.++..++..+.|+++..+++-+..... .....+.+++..++..++..+....+.....+
T Consensus 50 ~~~~~~~~~~~~~~i~~i~~~~~~~~~p~~~~i~g~iid~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 127 (1466)
T PTZ00265 50 PFKCLPASHRKLLGVSFVCATISGGTLPFFVSVFGVIMKNMNLGEN--VNDIIFSLVLIGIFQFILSFISSFCMDVVTTK 127 (1466)
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445567778888888888888888889999999986532211 11111111111111222222333334444555
Q ss_pred HHHHHHHHHHHHHHHHHhcccc---CCCChHHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 000720 345 IGIRVRSALTVLIYKRSMAIKF---AGPSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGAAPAFA 420 (1333)
Q Consensus 345 ~~~rir~~l~~~iy~K~L~ls~---~~~~~G~i~nlms~D~~~i~~~~~-~~~~~w~~plqi~~~l~lL~~~lG~~a~l~ 420 (1333)
+..++|. .+|++.++++. ...+.|++.|.++.|++.+.+++. .+-.+...++.++.++++++. +.|..+++
T Consensus 128 ~~~~lR~----~~~~~ll~~~~~~fd~~~~~~l~s~l~~d~~~i~~~i~~~~~~~~~~~~~~i~~~i~~~~-~sw~Lalv 202 (1466)
T PTZ00265 128 ILKTLKL----EFLKSVFYQDGQFHDNNPGSKLTSDLDFYLEQVNAGIGTKFITIFTYASAFLGLYIWSLF-KNARLTLC 202 (1466)
T ss_pred HHHHHHH----HHHHHHHCCCHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHH
Confidence 5555555 55555555442 123779999999999999888653 345555555556655555443 33345555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 421 ALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSA 500 (1333)
Q Consensus 421 gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~R~~~~~E~L~~Ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~a~ 500 (1333)
.++++.+++.+...+.++.++..++..+..++..+.+.|.++|||+||.|+-|+.+.++.++..+.-.+...+.....+.
T Consensus 203 ~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~f~~~~~~~~~~~~k~~~~~~~ 282 (1466)
T PTZ00265 203 ITCVFPLIYICGVICNKKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLYSKYILKANFMESL 282 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555666666677888888888888888899999999999999999999999998888876544333332233233332
Q ss_pred HHHHHHHH--HHHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000720 501 IAFLFWAS--PTLVSVITFGVCILLKT--------PLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFI 570 (1333)
Q Consensus 501 ~~~~~~~~--p~lv~~~tF~~~~~~~~--------~Lt~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL 570 (1333)
...+.... -..+.+++||.+.+..+ .++++.+++.+....+...++..+.+.+..+.++++|.+||.+.+
T Consensus 283 ~~~~~~~~~~~~~~l~~~~G~~lv~~g~~~~~~~~~~t~g~v~~~~~~~l~~~~~l~~i~~~~~~~~~a~~a~~ri~~ii 362 (1466)
T PTZ00265 283 HIGMINGFILASYAFGFWYGTRIIISDLSNQQPNNDFHGGSVISILLGVLISMFMLTIILPNITEYMKSLEATNSLYEII 362 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22221111 12234556777766543 588898888766555555666666677899999999999999999
Q ss_pred cccCCCCCC-CCCCCCCCCccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCc
Q 000720 571 KEDNQKKPI-TEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP 648 (1333)
Q Consensus 571 ~~~e~~~~~-~~~~~~~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~ 648 (1333)
+.++..+.. ...... ....|+++|++|+|+.+ +..++|++ ||++++||+++|+||||||||||+++|+|+++
T Consensus 363 ~~~~~~~~~~~~~~~~-~~~~I~~~nVsf~Y~~~-----~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~ 436 (1466)
T PTZ00265 363 NRKPLVENNDDGKKLK-DIKKIQFKNVRFHYDTR-----KDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYD 436 (1466)
T ss_pred cCCCCCCCCCCCccCC-CCCcEEEEEEEEEcCCC-----CCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhcc
Confidence 876522111 111111 12369999999999865 34579999 99999999999999999999999999999999
Q ss_pred CCCCcEEEE-CC-------------eEEEEcCCCCCCCCCHHHHhccCCc------------------------------
Q 000720 649 RISGAAIKV-HG-------------KKAYVPQSSWIQTGTIRENILFGKD------------------------------ 684 (1333)
Q Consensus 649 ~~~G~~i~~-~g-------------~iayv~Q~~~i~~~Tv~enI~~g~~------------------------------ 684 (1333)
|++|++ .+ +| ++|||+|+|.+|++||+|||.+|..
T Consensus 437 p~~G~I-~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 (1466)
T PTZ00265 437 PTEGDI-IINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCR 515 (1466)
T ss_pred CCCCeE-EEeCCcchhhCCHHHHHHhccEecccccchhccHHHHHHhcCCCccccchhcccccccccccccccccccccc
Confidence 999997 66 32 3799999999999999999999742
Q ss_pred ----------------------------CCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHHc
Q 000720 685 ----------------------------MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVY 736 (1333)
Q Consensus 685 ----------------------------~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~ 736 (1333)
..++...++++.+++.+.+..+|+|.+|.+|++|.+|||||||||+||||++
T Consensus 516 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll 595 (1466)
T PTZ00265 516 AKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAII 595 (1466)
T ss_pred ccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHh
Confidence 1123344555666777788899999999999999999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh--CCCeEEEecCchhhhhcCCEEEEEeCC-------------------
Q 000720 737 SNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLDAADLVLVMKDG------------------- 795 (1333)
Q Consensus 737 ~~~~illLDEP~saLD~~~~~~l~~~~~~~~~--~~~TvIlvtH~~~~l~~aD~i~vl~~G------------------- 795 (1333)
++|+|+|||||||+||+++.+.+.+. ++... +|+|+|+|||+++.++.||+|++|++|
T Consensus 596 ~~P~ILlLDEpTSaLD~~se~~i~~~-L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~g~~g~~~~~~~~~~~~~~~~ 674 (1466)
T PTZ00265 596 RNPKILILDEATSSLDNKSEYLVQKT-INNLKGNENRITIIIAHRLSTIRYANTIFVLSNRERGSTVDVDIIGEDPTKDN 674 (1466)
T ss_pred cCCCEEEEeCcccccCHHHHHHHHHH-HHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeCCccccccccccccccccccc
Confidence 99999999999999999998877654 44443 489999999999999899999999986
Q ss_pred ----------------------------eEEEccChHHHHhhcchHHHHHHHhhhhcccCCC-C-CCccc---ccc---c
Q 000720 796 ----------------------------KIEQSGKYEDLIADQNSELVRQMKAHRKSLDQVN-P-PQEDK---CLS---R 839 (1333)
Q Consensus 796 ----------------------------~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~---~~~---~ 839 (1333)
+|+++|+++|+++..++.+..++..+........ . .+... ... .
T Consensus 675 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ive~Gth~~L~~~~~g~y~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~ 754 (1466)
T PTZ00265 675 KENNNKNNKDDNNNNNNNNNNKINNAGSYIIEQGTHDALMKNKNGIYYTMINNQKVSSKKSSNNDNDKDSDMKSSAYKDS 754 (1466)
T ss_pred cccccccccccccccccccccccccCCceeEeeCCHHHHHhccCCcHHHHHhhhcccccccccccccccccccccccccc
Confidence 5999999999997456677777655432211100 0 00000 000 0
Q ss_pred CCcC-Ccc-hhhh-hccC--C-CCcCCC--C--CCcccc-------c----cccCcchHHHHHHHHHHhccchHHHHHHH
Q 000720 840 VPCQ-MSQ-ITEE-RFAR--P-ISCGEF--S--GRSQDE-------D----TELGRVKWTVYSAFITLVYKGALVPVILL 898 (1333)
Q Consensus 840 ~~~~-~~~-~~~~-~~~~--~-~~~~~~--~--~~~~~e-------~----~~~g~v~~~~y~~y~~~~~~~~~~~~~ll 898 (1333)
.... ... .... .... . ...... . .+..++ + .......+..++.++...... +.+.++
T Consensus 755 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 832 (1466)
T PTZ00265 755 ERGYDPDEMNGNSKHENESASNKKSCKMSDENASENNAGGKLPFLRNLFKRKPKAPNNLRIVYREIFSYKKD--VTIIAL 832 (1466)
T ss_pred ccccccccccccccccccccccccccccccccccchhccccchhhhhccccccccchhHHHHHHHHHHHHHH--HHHHHH
Confidence 0000 000 0000 0000 0 000000 0 000000 0 000000122223333221111 222222
Q ss_pred HHHHHHHHHHhhHHHHHHhcccc---c--ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 000720 899 CQVLFQALQMGSNYWIAWATDEK---R--KVSREQLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRA 973 (1333)
Q Consensus 899 ~~~l~~~~~~~~~~wl~~~~~~~---~--~~~~~~~l~vy~~l~~~~~i~~~~~~~~~~~~~~~~s~~L~~~ll~~il~a 973 (1333)
+.++..++....++.++.+.+.- . ......|..++++++++..++.+++.++..+.+.+...++|.++|++++++
T Consensus 833 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~lR~~lf~~ll~~ 912 (1466)
T PTZ00265 833 SILVAGGLYPVFALLYAKYVSTLFDFANLEANSNKYSLYILVIAIAMFISETLKNYYNNVIGEKVEKTMKRRLFENILYQ 912 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 33333444444444444333211 0 111335666777778888888999999999999999999999999999999
Q ss_pred ccccccc--cCcchhHHHHhccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH--
Q 000720 974 PISFFDS--TPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQAYYIT-- 1049 (1333)
Q Consensus 974 p~~fFd~--tp~GrIlnRfs~Di~~vd~~l~~~l~~~~~~~~~~l~~ivv~~~~~~~l~lv~ipl~~~~~~~~~~y~~-- 1049 (1333)
|++|||+ +++|++++|+++|++.+...+...+..++..++.+++.++++++.+|.++++++|++++.........+
T Consensus 913 ~~~~fd~~~~~~G~l~srl~~Dv~~l~~~~~~~l~~~~~~i~~~i~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~ 992 (1466)
T PTZ00265 913 EISFFDQDKHAPGLLSAHINRDVHLLKTGLVNNIVIFTHFIVLFLVSMVMSFYFCPIVAAVLTGTYFIFMRVFAIRARLT 992 (1466)
T ss_pred CHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999996 889999999999999999999999999999999999999999999999888776655443322211111
Q ss_pred HHHHHHHH-------------HhHhhchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 1050 TARELARM-------------VGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLR 1116 (1333)
Q Consensus 1050 ~srel~rl-------------~~~~~spl~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~r 1116 (1333)
..++.++. +.+..+...+.++|+++|++|||+|+.|+++.++|.+..+...+..........++...
T Consensus 993 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1072 (1466)
T PTZ00265 993 ANKDVEKKEINQPGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGLEDYFCNLIEKAIDYSNKGQKRKTLVNSMLWGF 1072 (1466)
T ss_pred HHHHHHhhhccccccccchhhhHHHHHHHHHHHHHHHhcHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11122111 22335567889999999999999999999999999999998887777665555555555
Q ss_pred HHHHHHHHHHHHHHHHH-hccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCcccCC
Q 000720 1117 INLLFNFAFFLVLIILV-TLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKN 1195 (1333)
Q Consensus 1117 l~ll~~~~~~~~~~~~~-~~~~~~~~~g~~gl~l~y~l~l~~~l~~~v~~~~~le~~~~SveRI~~~~~~p~E~~~~~~~ 1195 (1333)
.+++..+..+++++++. ....+.++.|.+..++.+.+........+...+.++++...|.||+.++++.+++.+...+.
T Consensus 1073 ~~~~~~~~~~~~~~~G~~lv~~g~it~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~a~~a~~ri~~ll~~~~~~~~~~~~ 1152 (1466)
T PTZ00265 1073 SQSAQLFINSFAYWFGSFLIRRGTILVDDFMKSLFTFLFTGSYAGKLMSLKGDSENAKLSFEKYYPLIIRKSNIDVRDNG 1152 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCcCCCCCCc
Confidence 55554444443333332 33456677776555544443333345556777889999999999999999876543211111
Q ss_pred CCC-CCCCCCcccEEEEEEEEEECCC-CCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCC------------
Q 000720 1196 SRP-SPEWPSSGKIELENLLVQYNPT-LPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEP------------ 1261 (1333)
Q Consensus 1196 ~~~-~~~wp~~G~I~f~nVsf~Y~~~-~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep------------ 1261 (1333)
..+ +...+..|.|+|+||+|+|+.. ..+||+|+||+|+|||+|||||+||||||||+++|.|||||
T Consensus 1153 ~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~ 1232 (1466)
T PTZ00265 1153 GIRIKNKNDIKGKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEH 1232 (1466)
T ss_pred ccccccCCCCCceEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccc
Confidence 111 0112346899999999999632 23599999999999999999999999999999999999999
Q ss_pred ------------------------------------------CCCeEEEcCEeCCCCChHHHhhcCeEecccccccccch
Q 000720 1262 ------------------------------------------SGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTV 1299 (1333)
Q Consensus 1262 ------------------------------------------~~G~I~IDGvdI~~i~l~~LRs~isiVpQdp~LF~GTI 1299 (1333)
++|+|+|||+||+++++++||++|++|||||+||+|||
T Consensus 1233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTI 1312 (1466)
T PTZ00265 1233 TNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSI 1312 (1466)
T ss_pred ccccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccH
Confidence 69999999999999999999999999999999999999
Q ss_pred hhhcCCC-CCCCHHHHHHHHHhCCCCcccccCC
Q 000720 1300 RTNLDPL-EQHSDQEIWEVKISKLLTHKSYQCE 1331 (1333)
Q Consensus 1300 R~NLdp~-~~~sDeeI~~aL~~~~L~~~~~~~~ 1331 (1333)
||||..+ +++|||||++|++++++.+.+.+.|
T Consensus 1313 reNI~~g~~~at~eeI~~A~k~A~l~~fI~~LP 1345 (1466)
T PTZ00265 1313 YENIKFGKEDATREDVKRACKFAAIDEFIESLP 1345 (1466)
T ss_pred HHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCc
Confidence 9999987 4699999999999999998776654
No 9
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=1.1e-65 Score=649.23 Aligned_cols=538 Identities=19% Similarity=0.243 Sum_probs=416.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 266 PQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRI 345 (1333)
Q Consensus 266 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~~ 345 (1333)
++...+.+++.++...++.++..++..+.|+++..+++.+..++.. ... .+.++.++++..++..++.....+...+.
T Consensus 13 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (588)
T PRK11174 13 LKQQSKPAKRWLNLSILLGFLSGLLLIAQAWLLATILQALIIENIP-REA-LLPPFILLILLFVLRALLAWLRERVGFKA 90 (588)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-hhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455677888889999999999999999999999999976321111 111 22334444455555666666666677788
Q ss_pred HHHHHHHHHHHHHHHHhccccCC---CChHHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 000720 346 GIRVRSALTVLIYKRSMAIKFAG---PSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGAAPAFAA 421 (1333)
Q Consensus 346 ~~rir~~l~~~iy~K~L~ls~~~---~~~G~i~nlms~D~~~i~~~~~-~~~~~w~~plqi~~~l~lL~~~lG~~a~l~g 421 (1333)
+.++...+...+|+|.++++... .++|+++|.+++|++++.+++. .+..++...+.+++++++++. ++|..++..
T Consensus 91 ~~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~l~l~~ 169 (588)
T PRK11174 91 GQHIRQQIRQQVLDKLQQLGPAWIQGKPAGSWATLVLEQVEDMHDFYARYLPQMALAVLVPLLILIAVFP-INWAAGLIL 169 (588)
T ss_pred HHHHHHHHHHHHHHHHHhcCchhhccCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 99999999999999999987542 3899999999999999998764 456666555555555544432 332333444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchHHHHHHHH----HHHHHHHHHHHHHHHHH
Q 000720 422 LFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKL----LRLREIERDSLKKYLYT 497 (1333)
Q Consensus 422 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~R~~~~~E~L~~Ir~IK~~~wE~~f~~~i----~~~R~~E~~~l~~~~~~ 497 (1333)
++++++...+...+.++.++..++.++..++..+.+.|.++|+++||.|+||+.+.+++ ++.|+.+.+..+.....
T Consensus 170 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (588)
T PRK11174 170 LGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRTMEVLRMAFLS 249 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444555677888888889999999999999999999999999999999877766 55566665555444333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 498 CSAIAFLFWASPTLVSVITFGVCILLKTPLTS---------GAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQE 568 (1333)
Q Consensus 498 ~a~~~~~~~~~p~lv~~~tF~~~~~~~~~Lt~---------~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~ 568 (1333)
.....++.. .+.+ .++.++.+.+.| .++. ..++.++.+...+..|+..++..+..+.++++|.+||.+
T Consensus 250 ~~~~~~~~~-~~~~-~~~~~~~~~~~g-~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ 326 (588)
T PRK11174 250 SAVLEFFAS-ISIA-LVAVYFGFSYLG-ELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVGAAESLVT 326 (588)
T ss_pred HHHHHHHHH-HHHH-HHHHHHHHHHhc-ccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333222222 1221 122333333333 3443 344555566677889999999999999999999999999
Q ss_pred HhcccCCCCCCCCCC-CCCCCccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCC
Q 000720 569 FIKEDNQKKPITEPT-SKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGE 646 (1333)
Q Consensus 569 fL~~~e~~~~~~~~~-~~~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~ 646 (1333)
+++.++..+.....+ ....+..|+++|++|.|+++ +++|+| ||++++||++||+||||||||||+++|+|+
T Consensus 327 ~l~~~~~~~~~~~~~~~~~~~~~i~~~~vsf~~~~~-------~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~ 399 (588)
T PRK11174 327 FLETPLAHPQQGEKELASNDPVTIEAEDLEILSPDG-------KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGF 399 (588)
T ss_pred HHcCCCcccCCCccccCCCCCceEEEEeeEEeccCC-------CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 998765221111111 11123469999999877643 468999 999999999999999999999999999999
Q ss_pred CcCCCCcEEEECC-------------eEEEEcCCCCCCCCCHHHHhccCCc-CCHHHHHHHHHHcccchHHHhhcCCCcc
Q 000720 647 IPRISGAAIKVHG-------------KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLS 712 (1333)
Q Consensus 647 ~~~~~G~~i~~~g-------------~iayv~Q~~~i~~~Tv~enI~~g~~-~~~~~~~~v~~~~~l~~d~~~~~~g~~t 712 (1333)
+ |++|++ .++| +++||||+|++|++||+|||.+|.+ .++++++++++.|+++++++.+|+|++|
T Consensus 400 ~-p~~G~I-~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT 477 (588)
T PRK11174 400 L-PYQGSL-KINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDT 477 (588)
T ss_pred C-CCCcEE-EECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhccccccc
Confidence 9 899986 7777 5899999999999999999999964 7889999999999999999999999999
Q ss_pred ccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhcCCEEEEE
Q 000720 713 VVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVM 792 (1333)
Q Consensus 713 ~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~aD~i~vl 792 (1333)
.+||+|.+||||||||++||||++++|+|+|||||||+||+++++++.+ .++...+++|+|+|||+++.++.||+|++|
T Consensus 478 ~vge~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~-~l~~~~~~~TvIiItHrl~~i~~aD~Iivl 556 (588)
T PRK11174 478 PIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQ-ALNAASRRQTTLMVTHQLEDLAQWDQIWVM 556 (588)
T ss_pred ccccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHH-HHHHHhCCCEEEEEecChHHHHhCCEEEEE
Confidence 9999999999999999999999999999999999999999999998876 556667899999999999999999999999
Q ss_pred eCCeEEEccChHHHHhhcchHHHHHHHh
Q 000720 793 KDGKIEQSGKYEDLIADQNSELVRQMKA 820 (1333)
Q Consensus 793 ~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 820 (1333)
++|+|++.|+++|+++ .+..+.++...
T Consensus 557 ~~G~i~e~G~~~eL~~-~~~~y~~l~~~ 583 (588)
T PRK11174 557 QDGQIVQQGDYAELSQ-AGGLFATLLAH 583 (588)
T ss_pred eCCeEeecCCHHHHHh-cchHHHHHHHH
Confidence 9999999999999997 55566665543
No 10
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.1e-65 Score=610.56 Aligned_cols=541 Identities=23% Similarity=0.317 Sum_probs=436.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCCCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 268 VIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSG-KHDHSS-YHYGLVLASVFLFAKTVESLTQRQWYFGANRI 345 (1333)
Q Consensus 268 ~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~-~~~~~~-~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~~ 345 (1333)
.+.+-.|+.+..+.++.++.......-|.++.++++-+.. .+.... .+.-..+++..+...+...+-..++.+...|+
T Consensus 140 ~l~~~~~~~l~~a~~~l~vss~~~~~iP~~~G~~id~~~~~~~~~~~~~~~~~~l~~l~~~~a~~~~~r~~~~~~a~~rv 219 (716)
T KOG0058|consen 140 GLLKPEWKWLVAAFVLLLVSSLINMFIPYYLGKLIDTISEGDDSADALKRACTILLGLFLIGALANAIRGGLLQYAGERV 219 (716)
T ss_pred HHhchhHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455678888888888999988888899999999998766 222101 12133344444444444555556677788899
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCChHHHHHHHHhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 000720 346 GIRVRSALTVLIYKRSMAIKFAGPSSGIIINMINVDVERIGDFF-LYIHRIWLLPVQVFLALVILYKNLGAAPAFAALFS 424 (1333)
Q Consensus 346 ~~rir~~l~~~iy~K~L~ls~~~~~~G~i~nlms~D~~~i~~~~-~~~~~~w~~plqi~~~l~lL~~~lG~~a~l~gl~~ 424 (1333)
..|+|..+.+.+.++....-+.. .+|++++.++.|++-+.+.+ .++.+..-..+|...++.++.. +-|-.++..++.
T Consensus 220 ~~rlR~~lF~sil~QdiaFFD~n-ktGeL~SRLtsD~~~vs~svs~nls~~lR~~~~~~g~~~~M~~-~S~~Ltlv~~i~ 297 (716)
T KOG0058|consen 220 VARLRTDLFRSLLRQDIAFFDEN-KTGELISRLTSDTQIVSNSVSQNLSDGLRNLVQGFGGLGFMFS-LSWRLTLVTLIV 297 (716)
T ss_pred HHHHHHHHHHHHHhhhhhhhccC-CccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhh-hhHHHHHHHHHH
Confidence 99999999888888887665544 69999999999999998865 4677776677788777766553 222344555556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 425 TIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQE----FLKKLLRLREIERDSLKKYLYTCSA 500 (1333)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~D~R~~~~~E~L~~Ir~IK~~~wE~~----f~~~i~~~R~~E~~~l~~~~~~~a~ 500 (1333)
+.+++.+..++++.+++..++..++..+-.+...|.|++||+||+|+-|+. |.+++++.++.-.+ -....++
T Consensus 298 ~P~v~~~~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~~k----~a~a~~~ 373 (716)
T KOG0058|consen 298 VPIVALVAKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSKK----EAVAYGI 373 (716)
T ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHHH----HHHHhhH
Confidence 666666778888888888888888888899999999999999999999974 55555554433222 2221111
Q ss_pred HHHH--HHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCC
Q 000720 501 IAFL--FWASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKP 578 (1333)
Q Consensus 501 ~~~~--~~~~p~lv~~~tF~~~~~~~~~Lt~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~ 578 (1333)
.... +...-..++++.+|.+...++.+|++...+.+.+-..+..++..+...++.++++..+.+|+.+|++.+++-+.
T Consensus 374 f~~~~~~~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr~P~i~~ 453 (716)
T KOG0058|consen 374 FFGSTNLLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMDRKPRIPL 453 (716)
T ss_pred hHhHHHHHHhHHHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccCCCCCC
Confidence 1111 11123456677889999999999999999999998999999999999999999999999999999998873221
Q ss_pred -CCCCCCCCCCccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEE
Q 000720 579 -ITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIK 656 (1333)
Q Consensus 579 -~~~~~~~~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~ 656 (1333)
-...|. ...+.|+|+|++|+||.+ ++.++|+| ||+|+|||.||+|||+|+||||+.++|+.+++|++|++ .
T Consensus 454 ~G~~~p~-~~~G~IeF~~VsFaYP~R-----p~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~I-l 526 (716)
T KOG0058|consen 454 TGTLAPD-HLQGVIEFEDVSFAYPTR-----PDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRI-L 526 (716)
T ss_pred CCccccc-cccceEEEEEeeeecCCC-----CCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeE-E
Confidence 122232 456789999999999999 88899999 99999999999999999999999999999999999996 7
Q ss_pred ECC-------------eEEEEcCCCCCCCCCHHHHhccCCc-CCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCC
Q 000720 657 VHG-------------KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLS 722 (1333)
Q Consensus 657 ~~g-------------~iayv~Q~~~i~~~Tv~enI~~g~~-~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LS 722 (1333)
++| +||+|.|+|.+|++||+|||.+|.+ .+++..+++.+.+.-++.+..+|+|.+|.+||+|.+||
T Consensus 527 lDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLS 606 (716)
T KOG0058|consen 527 LDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLS 606 (716)
T ss_pred ECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCcccccc
Confidence 776 4899999999999999999999986 34455566666667777899999999999999999999
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhcCCEEEEEeCCeEEEccC
Q 000720 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGK 802 (1333)
Q Consensus 723 GGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~aD~i~vl~~G~i~~~g~ 802 (1333)
|||||||||||||++||.|+||||.|||||++. +++.++.+....+++|||+|+|+++.++.||+|+|+++|++++.|+
T Consensus 607 GGQKQRIAIARALlr~P~VLILDEATSALDaeS-E~lVq~aL~~~~~~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E~G~ 685 (716)
T KOG0058|consen 607 GGQKQRIAIARALLRNPRVLILDEATSALDAES-EYLVQEALDRLMQGRTVLVIAHRLSTVRHADQIVVIDKGRVVEMGT 685 (716)
T ss_pred chHHHHHHHHHHHhcCCCEEEEechhhhcchhh-HHHHHHHHHHhhcCCeEEEEehhhhHhhhccEEEEEcCCeEEeccc
Confidence 999999999999999999999999999999976 6777888888888999999999999999999999999999999999
Q ss_pred hHHHHhhcchHHHHHHHhhh
Q 000720 803 YEDLIADQNSELVRQMKAHR 822 (1333)
Q Consensus 803 ~~~l~~~~~~~~~~~~~~~~ 822 (1333)
++|++++.++.+.++++.+.
T Consensus 686 h~eLl~~~~gly~~Lv~~q~ 705 (716)
T KOG0058|consen 686 HDELLSKPNGLYAKLVQRQL 705 (716)
T ss_pred HHHHhhCcccHHHHHHHHhc
Confidence 99999976677888776543
No 11
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=1.1e-62 Score=634.20 Aligned_cols=534 Identities=16% Similarity=0.212 Sum_probs=430.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 267 QVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIG 346 (1333)
Q Consensus 267 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~~~ 346 (1333)
+..++.+++.++...+..++..++..+.|++++.+++.+-..... . . .+.+++++++..++..++.....+...+++
T Consensus 146 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~~-~-~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (710)
T TIGR03796 146 WRRLRGSRGALLYLLLAGLLLVLPGLVIPAFSQIFVDEILVQGRQ-D-W-LRPLLLGMGLTALLQGVLTWLQLYYLRRLQ 222 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCh-h-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566677778888888888899999999999999866433221 1 1 333444555555556666666666778889
Q ss_pred HHHHHHHHHHHHHHHhccccC---CCChHHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 000720 347 IRVRSALTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGAAPAFAAL 422 (1333)
Q Consensus 347 ~rir~~l~~~iy~K~L~ls~~---~~~~G~i~nlms~D~~~i~~~~~-~~~~~w~~plqi~~~l~lL~~~lG~~a~l~gl 422 (1333)
.++...+...+|+|.++++.. .+++|+++|.++.| +.+.++.. .+..+....+.+++.+++++..-+ +.+++.+
T Consensus 223 ~~~~~~l~~~~~~~ll~l~~~~~~~~~~g~~~~r~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~l~li~l 300 (710)
T TIGR03796 223 IKLAVGMSARFLWHILRLPVRFFAQRHAGDIASRVQLN-DQVAEFLSGQLATTALDAVMLVFYALLMLLYDP-VLTLIGI 300 (710)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHcCCcccHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 999999999999999998653 34999999999988 67877653 344444455555555555554333 5556666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 423 FSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIA 502 (1333)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~R~~~~~E~L~~Ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~a~~~ 502 (1333)
+.+++.+.+...+.+...+..++.++..+++.+.+.|.++|+++||.+++|+.+.++.++.+.++.+...+.....+...
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (710)
T TIGR03796 301 AFAAINVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELGVLTQILG 380 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666777788888888899999999999999999999999999999999999999887777776555444443332
Q ss_pred HHHHHHH--HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCC
Q 000720 503 FLFWASP--TLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPIT 580 (1333)
Q Consensus 503 ~~~~~~p--~lv~~~tF~~~~~~~~~Lt~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~~ 580 (1333)
.+..... ..+.++.++++.+.++.+|.+.++++..++..+..|+..++..+..+.+++++++||.++++.+++.+...
T Consensus 381 ~~~~~i~~~~~~~il~~g~~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~ 460 (710)
T TIGR03796 381 VLPTLLTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPLLEE 460 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccc
Confidence 2222221 22335567788888899999999999999999999999999999999999999999999998765221111
Q ss_pred -------CCCCCCCCccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCC
Q 000720 581 -------EPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISG 652 (1333)
Q Consensus 581 -------~~~~~~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G 652 (1333)
..+....+..|+++|++|+|+.+ ++++|+| ||+|++||.++|+||||||||||+++|+|+++|++|
T Consensus 461 ~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~------~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G 534 (710)
T TIGR03796 461 EEAPAAGSEPSPRLSGYVELRNITFGYSPL------EPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSG 534 (710)
T ss_pred ccccccccccCCCCCCeEEEEEEEEecCCC------CCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence 01101224579999999999864 3578999 999999999999999999999999999999999999
Q ss_pred cEEEECC-------------eEEEEcCCCCCCCCCHHHHhccCC-cCCHHHHHHHHHHcccchHHHhhcCCCccccCCCC
Q 000720 653 AAIKVHG-------------KKAYVPQSSWIQTGTIRENILFGK-DMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERG 718 (1333)
Q Consensus 653 ~~i~~~g-------------~iayv~Q~~~i~~~Tv~enI~~g~-~~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g 718 (1333)
++ .++| +++||||+|+++++||||||.++. +.++++..++++.+++.++++.+|+|.+|.+|++|
T Consensus 535 ~I-~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G 613 (710)
T TIGR03796 535 EI-LFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGG 613 (710)
T ss_pred EE-EECCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCC
Confidence 86 7765 579999999999999999999875 46778888999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhcCCEEEEEeCCeEE
Q 000720 719 INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIE 798 (1333)
Q Consensus 719 ~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~aD~i~vl~~G~i~ 798 (1333)
.+||||||||++||||++++|+|+|||||||+||+++++++++.+.+ .++|+|+|||+++.++.||+|++|++|+|+
T Consensus 614 ~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~---~~~T~IiitHrl~~i~~~D~Iivl~~G~i~ 690 (710)
T TIGR03796 614 ANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR---RGCTCIIVAHRLSTIRDCDEIIVLERGKVV 690 (710)
T ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh---cCCEEEEEecCHHHHHhCCEEEEEeCCEEE
Confidence 99999999999999999999999999999999999999998876543 589999999999999999999999999999
Q ss_pred EccChHHHHhhcchHHHH
Q 000720 799 QSGKYEDLIADQNSELVR 816 (1333)
Q Consensus 799 ~~g~~~~l~~~~~~~~~~ 816 (1333)
+.|+++|+++ .++.+.+
T Consensus 691 ~~G~~~~Ll~-~~~~y~~ 707 (710)
T TIGR03796 691 QRGTHEELWA-VGGAYAR 707 (710)
T ss_pred EecCHHHHHH-cCCcHHH
Confidence 9999999987 4444444
No 12
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=2.5e-62 Score=628.06 Aligned_cols=537 Identities=20% Similarity=0.240 Sum_probs=425.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 265 LPQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANR 344 (1333)
Q Consensus 265 l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~ 344 (1333)
+++..++.+++.++...++.++..++..+.|++++.+++.+-..... ..-+.+++++++..++..++.....+...+
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (686)
T TIGR03797 126 LLRFALRGARRDLLAILAMGLLGTLLGMLVPIATGILIGTAIPDADR---SLLVQIALALLAAAVGAAAFQLAQSLAVLR 202 (686)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555667788888888999999999999999999999876432221 112334444445555555655555666778
Q ss_pred HHHHHHHHHHHHHHHHHhccccC---CCChHHHHHHHHhhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 000720 345 IGIRVRSALTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFFLY--IHRIWLLPVQVFLALVILYKNLGAAPAF 419 (1333)
Q Consensus 345 ~~~rir~~l~~~iy~K~L~ls~~---~~~~G~i~nlms~D~~~i~~~~~~--~~~~w~~plqi~~~l~lL~~~lG~~a~l 419 (1333)
++.++...+...+|+|.++++.. .+++|+++|.++ |++.+.+++.. +..+...++ +++++++++..-+ +.++
T Consensus 203 ~~~~~~~~l~~~~~~~ll~~~~~~~~~~~~g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~-~l~l 279 (686)
T TIGR03797 203 LETRMDASLQAAVWDRLLRLPVSFFRQYSTGDLASRAM-GISQIRRILSGSTLTTLLSGIF-ALLNLGLMFYYSW-KLAL 279 (686)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHCCCChhHHHHHHh-HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH-HHHH
Confidence 89999999999999999998653 348999999997 89998886532 223333333 3334444443333 5555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 420 AALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCS 499 (1333)
Q Consensus 420 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~R~~~~~E~L~~Ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~a 499 (1333)
+.++++++..++...+.+...+..++.++..+++.+...|.++|+++||.++.|+.+.++.++.-++..+...+......
T Consensus 280 i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (686)
T TIGR03797 280 VAVALALVAIAVTLVLGLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQRIEN 359 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56665666666777788888899999999999999999999999999999999998888777654444443333333333
Q ss_pred HHHHHHHHHHHH--HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCC
Q 000720 500 AIAFLFWASPTL--VSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKK 577 (1333)
Q Consensus 500 ~~~~~~~~~p~l--v~~~tF~~~~~~~~~Lt~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~ 577 (1333)
....+......+ +.++.++++...++.+|.+.++++..++..+..|+..++..+..+.+++++++|+.++++.+++.+
T Consensus 360 ~~~~~~~~i~~~~~~~il~~g~~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~ 439 (686)
T TIGR03797 360 LLTVFNAVLPVLTSAALFAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVD 439 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Confidence 222222222222 234456777777889999999999999999999999999999999999999999999998765322
Q ss_pred CCCCCCCCCCCccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEE
Q 000720 578 PITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIK 656 (1333)
Q Consensus 578 ~~~~~~~~~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~ 656 (1333)
.... ........|+++|++|+|+++ ++++|+| ||++++||.+||+|+||||||||+++|+|+++|++|++ .
T Consensus 440 ~~~~-~~~~~~~~I~~~nvsf~Y~~~------~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I-~ 511 (686)
T TIGR03797 440 EAKT-DPGKLSGAIEVDRVTFRYRPD------GPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSV-F 511 (686)
T ss_pred cCcC-CCCCCCceEEEEEEEEEcCCC------CccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEE-E
Confidence 1111 111223579999999999754 3578999 99999999999999999999999999999999999996 7
Q ss_pred ECC-------------eEEEEcCCCCCCCCCHHHHhccCCcCCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCCh
Q 000720 657 VHG-------------KKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSG 723 (1333)
Q Consensus 657 ~~g-------------~iayv~Q~~~i~~~Tv~enI~~g~~~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSG 723 (1333)
++| ++|||||+|++|++||+|||.++.+.+++...++++.+++.++++.+|+|.+|.+|++|.+|||
T Consensus 512 idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSG 591 (686)
T TIGR03797 512 YDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSG 591 (686)
T ss_pred ECCEEcCcCCHHHHHhccEEEccCCccCcccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCH
Confidence 776 4799999999999999999999988888888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhcCCEEEEEeCCeEEEccCh
Q 000720 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKY 803 (1333)
Q Consensus 724 GQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~aD~i~vl~~G~i~~~g~~ 803 (1333)
|||||++||||++++|++++||||||+||+++++++.+.+. .. ++|+|+|||+++.++.||+|++|++|+|++.|++
T Consensus 592 GQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~-~~--~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~G~~ 668 (686)
T TIGR03797 592 GQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLE-RL--KVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTY 668 (686)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHH-Hh--CCeEEEEecChHHHHcCCEEEEEECCEEEEECCH
Confidence 99999999999999999999999999999999998887643 33 6899999999999999999999999999999999
Q ss_pred HHHHhhcchHHHHHHH
Q 000720 804 EDLIADQNSELVRQMK 819 (1333)
Q Consensus 804 ~~l~~~~~~~~~~~~~ 819 (1333)
+|+++ .++.+.++..
T Consensus 669 ~~Ll~-~~~~y~~l~~ 683 (686)
T TIGR03797 669 DELMA-REGLFAQLAR 683 (686)
T ss_pred HHHHh-CCcHHHHHHH
Confidence 99987 4556665543
No 13
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=3.1e-62 Score=627.95 Aligned_cols=530 Identities=22% Similarity=0.310 Sum_probs=428.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 265 LPQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANR 344 (1333)
Q Consensus 265 l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~ 344 (1333)
.++..++.+++.+....++.++..++.++.|++++.+++.+-.... ... .+.+++++++..++..+......+...+
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~p~~~~~iiD~~~~~~~--~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (694)
T TIGR03375 137 WFWSTLKESWPLYRDVLIASLLINLLALASPLFVMNVYDRVVPNQA--FET-LWVLAIGVALAIVFDFVLKTLRSYFLDV 213 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCc--HhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555667788888888888899999999999999999987643322 111 2333444444444555555555566778
Q ss_pred HHHHHHHHHHHHHHHHHhccccC--CCChHHHHHHHHhhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 000720 345 IGIRVRSALTVLIYKRSMAIKFA--GPSSGIIINMINVDVERIGDFFLY--IHRIWLLPVQVFLALVILYKNLGAAPAFA 420 (1333)
Q Consensus 345 ~~~rir~~l~~~iy~K~L~ls~~--~~~~G~i~nlms~D~~~i~~~~~~--~~~~w~~plqi~~~l~lL~~~lG~~a~l~ 420 (1333)
.+.++...+...+|+|.++++.. .+++|++++.+ .|++.+.++... +..+...+.-+ +.+++++..-+ +.++.
T Consensus 214 ~~~~~~~~l~~~~~~~ll~l~~~~~~~~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~-~l~li 290 (694)
T TIGR03375 214 AGKKADLILSAKLFERVLGLRMEARPASVGSFANQL-REFESVRDFFTSATLTALIDLPFAL-LFLLVIAIIGG-PLVWV 290 (694)
T ss_pred HHHHHHHHHHHHHHHHHhCCCcccCCCChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHH-HHHHHHHHHHh-HHHHH
Confidence 88899999999999999988654 33899999999 799999987542 23333334333 33334443333 55666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 421 ALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSA 500 (1333)
Q Consensus 421 gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~R~~~~~E~L~~Ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~a~ 500 (1333)
.++++++.+++...+.+..++..++.++..+++.+.+.|.++|+++||.+++|+.+.++.++..++..+...+.....+.
T Consensus 291 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (694)
T TIGR03375 291 PLVAIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFLSNL 370 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666777788888899999999999999999999999999999999999999999988877766665555544443
Q ss_pred HHHHHHHHHH--HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCC
Q 000720 501 IAFLFWASPT--LVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKP 578 (1333)
Q Consensus 501 ~~~~~~~~p~--lv~~~tF~~~~~~~~~Lt~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~ 578 (1333)
...+...... .+.+++++++.+..+.+|.+.++.++.++..+..|+..++..+..+.+++++++|+.++++.+++.+.
T Consensus 371 ~~~~~~~~~~~~~~~il~~g~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~ 450 (694)
T TIGR03375 371 ATNFAQFIQQLVSVAIVVVGVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVERPE 450 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC
Confidence 3322222222 23345678888888899999999999999999999999999999999999999999999987652211
Q ss_pred C-CCCCCCCCCccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEE
Q 000720 579 I-TEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIK 656 (1333)
Q Consensus 579 ~-~~~~~~~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~ 656 (1333)
. ...+.......|+++|++|+|+.+ ++++|+| |+++++||.++|+|+||||||||+++|+|+++|++|++ .
T Consensus 451 ~~~~~~~~~~~~~I~~~~vsf~Y~~~------~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I-~ 523 (694)
T TIGR03375 451 GTRFLHRPRLQGEIEFRNVSFAYPGQ------ETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSV-L 523 (694)
T ss_pred CCCCCCCCCccceEEEEEEEEEeCCC------CccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE-E
Confidence 1 111111224579999999999753 3578999 99999999999999999999999999999999999986 7
Q ss_pred ECC-------------eEEEEcCCCCCCCCCHHHHhccCCc-CCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCC
Q 000720 657 VHG-------------KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLS 722 (1333)
Q Consensus 657 ~~g-------------~iayv~Q~~~i~~~Tv~enI~~g~~-~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LS 722 (1333)
++| +++||||+|++|++||+|||.++.+ .++++..++++.+++.++++.+|+|.+|.+|++|.+||
T Consensus 524 idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LS 603 (694)
T TIGR03375 524 LDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLS 603 (694)
T ss_pred ECCEEhhhCCHHHHHhccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCC
Confidence 776 5899999999999999999999976 67888899999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhcCCEEEEEeCCeEEEccC
Q 000720 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGK 802 (1333)
Q Consensus 723 GGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~aD~i~vl~~G~i~~~g~ 802 (1333)
||||||++||||++++|++++||||||+||+++++++.+. +....+++|+|+|||+++.++.||+|++|++|++++.|+
T Consensus 604 gGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~-l~~~~~~~T~iiItHrl~~~~~~D~iivl~~G~i~e~G~ 682 (694)
T TIGR03375 604 GGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDR-LKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGP 682 (694)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHhCCCEEEEEecCHHHHHhCCEEEEEeCCEEEeeCC
Confidence 9999999999999999999999999999999998888764 555667899999999999999999999999999999999
Q ss_pred hHHHHh
Q 000720 803 YEDLIA 808 (1333)
Q Consensus 803 ~~~l~~ 808 (1333)
++|+++
T Consensus 683 ~~eLl~ 688 (694)
T TIGR03375 683 KDQVLE 688 (694)
T ss_pred HHHHHH
Confidence 999976
No 14
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=3e-62 Score=626.76 Aligned_cols=525 Identities=20% Similarity=0.274 Sum_probs=400.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 270 IHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYG-LVLASVFLFAKTVESLTQRQWYFGANRIGIR 348 (1333)
Q Consensus 270 ~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~g-~~l~~~l~~~~~~~~l~~~~~~~~~~~~~~r 348 (1333)
++.+++.++...++.++..++..+.|+++..+++.+.+..+....... +++++..++..++..+....+.+...++..+
T Consensus 156 ~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 235 (711)
T TIGR00958 156 SGRDWPWLISAFVFLTLSSLGEMFIPFYTGRVIDTLGGDKGPPALASAIFFMCLLSIASSVSAGLRGGSFNYTMARINLR 235 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667788888888999999999999999999987643321011101 1111111222222333333344445556666
Q ss_pred HHHHHHHHHHHHHhcccc---CCCChHHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 000720 349 VRSALTVLIYKRSMAIKF---AGPSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGAAPAFAALFS 424 (1333)
Q Consensus 349 ir~~l~~~iy~K~L~ls~---~~~~~G~i~nlms~D~~~i~~~~~-~~~~~w~~plqi~~~l~lL~~~lG~~a~l~gl~~ 424 (1333)
+| ..+|+|.++.+. ...++|+++|.++.|++.+.+.+. .+..+....+++++++++++. ++|..+++.++.
T Consensus 236 lr----~~l~~~ll~~~~~~f~~~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~~-~s~~l~l~~l~~ 310 (711)
T TIGR00958 236 IR----EDLFRSLLRQDLGFFDENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLW-LSPRLTMVTLIN 310 (711)
T ss_pred HH----HHHHHHHHcCCHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHH
Confidence 66 455666665543 234889999999999999987653 566666666777766666554 332444555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 425 TIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIAFL 504 (1333)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~D~R~~~~~E~L~~Ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~a~~~~~ 504 (1333)
+++...+...+.+..++..++..+..++..+...|.++|+++||.|++|+.+.++.++..++-.+..++.....+....+
T Consensus 311 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (711)
T TIGR00958 311 LPLVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKALAYAGYLWT 390 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555566777888888888888899999999999999999999999999876666554333222222222111211111
Q ss_pred HHH--HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCC
Q 000720 505 FWA--SPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPITEP 582 (1333)
Q Consensus 505 ~~~--~p~lv~~~tF~~~~~~~~~Lt~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~~~~ 582 (1333)
... .-..+.++.++.+.+..+.++++.+++.+.++..+..|+..++..+..+.+++++.+||.++++.+++.+.....
T Consensus 391 ~~~~~~~~~~~il~~g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~ 470 (711)
T TIGR00958 391 TSVLGMLIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLTGTL 470 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCC
Confidence 111 112233455677777888999999999999999999999999999999999999999999999876532211111
Q ss_pred CCCCCCccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC--
Q 000720 583 TSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-- 659 (1333)
Q Consensus 583 ~~~~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g-- 659 (1333)
...+....|+++|++|+|+++ ++.++|+| ||++++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 471 ~~~~~~~~I~~~nVsf~Y~~~-----~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I-~idg~~ 544 (711)
T TIGR00958 471 APLNLEGLIEFQDVSFSYPNR-----PDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQV-LLDGVP 544 (711)
T ss_pred CCCCCCCeEEEEEEEEECCCC-----CCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEE-EECCEE
Confidence 111234569999999999865 34689999 99999999999999999999999999999999999986 7776
Q ss_pred -----------eEEEEcCCCCCCCCCHHHHhccCCc-CCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHH
Q 000720 660 -----------KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQ 727 (1333)
Q Consensus 660 -----------~iayv~Q~~~i~~~Tv~enI~~g~~-~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkq 727 (1333)
+++||||+|+++++||||||.+|.+ .+++...++++.+++.++++.+|+|.+|.+|++|.+|||||||
T Consensus 545 i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQ 624 (711)
T TIGR00958 545 LVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQ 624 (711)
T ss_pred HHhcCHHHHHhhceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHH
Confidence 5799999999999999999999964 5667888899999999999999999999999999999999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhcCCEEEEEeCCeEEEccChHHHH
Q 000720 728 RIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLI 807 (1333)
Q Consensus 728 Rv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~aD~i~vl~~G~i~~~g~~~~l~ 807 (1333)
|++||||++++|+|+|||||||+||+++.+.+.+ ....+++|+|+|||+++.++.||+|++|++|+|++.|+++|++
T Consensus 625 RlalARALl~~p~ILILDEpTSaLD~~te~~i~~---~~~~~~~TvIiItHrl~~i~~aD~IivL~~G~ive~Gt~~eL~ 701 (711)
T TIGR00958 625 RIAIARALVRKPRVLILDEATSALDAECEQLLQE---SRSRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQLM 701 (711)
T ss_pred HHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH---hhccCCCeEEEEeccHHHHHhCCEEEEEECCEEEEeeCHHHHH
Confidence 9999999999999999999999999999887776 2234689999999999999999999999999999999999998
Q ss_pred h
Q 000720 808 A 808 (1333)
Q Consensus 808 ~ 808 (1333)
+
T Consensus 702 ~ 702 (711)
T TIGR00958 702 E 702 (711)
T ss_pred h
Confidence 7
No 15
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=7.5e-62 Score=605.72 Aligned_cols=541 Identities=23% Similarity=0.282 Sum_probs=438.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 263 TSLPQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGA 342 (1333)
Q Consensus 263 ~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~ 342 (1333)
.+.++..++-+++.+.-..+..++..++..+.|++.+.+++.+-...+. ..-.+++.++.+..+++.+....-.+..
T Consensus 142 ~~~f~~~~~~~~~~l~~v~~~sl~l~i~~l~~p~~~q~viD~Vl~~~~~---~tL~vl~ig~~~~~l~~~~l~~lr~~~~ 218 (709)
T COG2274 142 LSWFIPLLFKYRRLLFEVLLASLLLQLLALATPLFSQIVIDKVLPDASR---STLTVLAIGLLLAALFEALLRLLRTYLI 218 (709)
T ss_pred hHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCch---hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666677888888888888999999999999999999876543322 2245566677777777777766666777
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccC---CCChHHHHHHHHhhHHHHHHHHHH-H-HHHHHHHHHHHHHHHHHHHHhhhHH
Q 000720 343 NRIGIRVRSALTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFFLY-I-HRIWLLPVQVFLALVILYKNLGAAP 417 (1333)
Q Consensus 343 ~~~~~rir~~l~~~iy~K~L~ls~~---~~~~G~i~nlms~D~~~i~~~~~~-~-~~~w~~plqi~~~l~lL~~~lG~~a 417 (1333)
..++.|+...+...+|++.|+++.. .+++|++++.++ |.++|.+++.. + -.+.-.|+ .++.+.+++..-+ ..
T Consensus 219 ~~~~~rld~~l~~~~~~hll~Lpl~~f~~r~~Ge~~sR~~-el~~Ir~flt~~~l~~iiD~~~-~~i~l~vm~~ys~-~L 295 (709)
T COG2274 219 AHLGKRLDLELSGRFFRHLLRLPLSYFEKRSVGEIISRVR-ELEQIREFLTGSILTLIIDLLF-ALIFLAVMFLYSW-KL 295 (709)
T ss_pred HHHHHHHhHHHHHHHHHHHHcCcHHHccCCChhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH-HH
Confidence 8899999999999999999999753 459999999975 79999888642 1 12222222 2223334444444 66
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 418 AFAALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYT 497 (1333)
Q Consensus 418 ~l~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~R~~~~~E~L~~Ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~ 497 (1333)
++.+++.+++.+.+..++.+..++..++.++...++-+...|.++||++||..+-|+.|..+.++.=.+..+.-.+....
T Consensus 296 ~li~l~~~~l~~l~~~~~~~~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~~~~ 375 (709)
T COG2274 296 TLIVLAAIPLNVLITLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKL 375 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 77777777777888888888999999999999999999999999999999999999999888887655555543333333
Q ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Q 000720 498 CSAIAFLFWASPT--LVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQ 575 (1333)
Q Consensus 498 ~a~~~~~~~~~p~--lv~~~tF~~~~~~~~~Lt~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~ 575 (1333)
............. -+.+++||++.++++.+|.|..+++.++...+..|+..+......+.+++++.+|+.+.++.|.+
T Consensus 376 ~~~~~~~~~~l~~l~~v~iL~~G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E 455 (709)
T COG2274 376 ALILNTIKSLLQQLSSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPE 455 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 3222222222222 23467899999999999999999999999999999999999999999999999999999998863
Q ss_pred CCCCC-CCCCCCCCccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCc
Q 000720 576 KKPIT-EPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGA 653 (1333)
Q Consensus 576 ~~~~~-~~~~~~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~ 653 (1333)
.+... .......++.|+++|++|.|+.+ +.++|+| |++|++||.+||+|+||||||||+|+|+|+++|.+|+
T Consensus 456 ~~~~~~~~~~~~~~g~I~~~nvsf~y~~~------~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~ 529 (709)
T COG2274 456 QEGDKTLIHLPKLQGEIEFENVSFRYGPD------DPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGR 529 (709)
T ss_pred cccccccccccccCceEEEEEEEEEeCCC------CcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCce
Confidence 22211 12223346789999999999876 3479999 9999999999999999999999999999999999999
Q ss_pred EEEECC-------------eEEEEcCCCCCCCCCHHHHhccCCcCCH-HHHHHHHHHcccchHHHhhcCCCccccCCCCC
Q 000720 654 AIKVHG-------------KKAYVPQSSWIQTGTIRENILFGKDMRQ-SFYEEVLEGCALNQDIEMWADGDLSVVGERGI 719 (1333)
Q Consensus 654 ~i~~~g-------------~iayv~Q~~~i~~~Tv~enI~~g~~~~~-~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~ 719 (1333)
+ .++| +++||+|++.+|++||+|||.++.+... +...++++..+..+++..+|.|.+|.+||+|.
T Consensus 530 I-~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~ 608 (709)
T COG2274 530 I-LLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGA 608 (709)
T ss_pred E-EECCEeHHhcCHHHHHhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCC
Confidence 6 8876 4799999999999999999999987654 44445555556788999999999999999999
Q ss_pred CCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhcCCEEEEEeCCeEEE
Q 000720 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQ 799 (1333)
Q Consensus 720 ~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~aD~i~vl~~G~i~~ 799 (1333)
+||||||||++||||++++|+|+||||||||||+++.+.+.++ +....+|+|+|++||++..++.||+|+||++|+|++
T Consensus 609 ~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~-L~~~~~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~ 687 (709)
T COG2274 609 NLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQN-LLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVE 687 (709)
T ss_pred CCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHH-HHHHhcCCeEEEEEccchHhhhccEEEEccCCceec
Confidence 9999999999999999999999999999999999998888775 455678899999999999999999999999999999
Q ss_pred ccChHHHHhhcchHHHHHH
Q 000720 800 SGKYEDLIADQNSELVRQM 818 (1333)
Q Consensus 800 ~g~~~~l~~~~~~~~~~~~ 818 (1333)
+|+++|+++. .+.+.++.
T Consensus 688 ~gs~~ell~~-~g~y~~l~ 705 (709)
T COG2274 688 QGSHEELLAQ-GGLYARLY 705 (709)
T ss_pred cCCHHHHHHh-cChHHHHH
Confidence 9999999984 65565554
No 16
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=1.5e-60 Score=601.86 Aligned_cols=539 Identities=18% Similarity=0.216 Sum_probs=415.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 267 QVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIG 346 (1333)
Q Consensus 267 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~~~ 346 (1333)
+.+++.+++.++...+..++..++..+.|++++.+++.+.+... ... ...++..+++..++..+......+...+++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~--~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 93 (582)
T PRK11176 17 WPTIAPFKAGLIVAGVALILNAASDTFMLSLLKPLLDDGFGKAD--RSV-LKWMPLVVIGLMILRGITSFISSYCISWVS 93 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc--hhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667777777777778888888889999999886654321 111 122222222233334444444444556777
Q ss_pred HHHHHHHHHHHHHHHhccccC---CCChHHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 000720 347 IRVRSALTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGAAPAFAAL 422 (1333)
Q Consensus 347 ~rir~~l~~~iy~K~L~ls~~---~~~~G~i~nlms~D~~~i~~~~~-~~~~~w~~plqi~~~l~lL~~~lG~~a~l~gl 422 (1333)
.++...+...+|+|.++++.. ..+.|+++|.++.|++++.+... .+..+...++.+++.+.+++..-+ +.++..+
T Consensus 94 ~~~~~~lr~~~~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~l~l~~l 172 (582)
T PRK11176 94 GKVVMTMRRRLFGHMMGMPVSFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSW-QLSLILI 172 (582)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 788888889999999887653 33899999999999999988643 445566666666666666554333 5455555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 423 FSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIA 502 (1333)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~R~~~~~E~L~~Ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~a~~~ 502 (1333)
+++++...+.....+..++..++.++..++..+...|.++|+++||.+++|+.+.++.++.-++-.+...+.....+...
T Consensus 173 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (582)
T PRK11176 173 VIAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQGMKMVSASSISD 252 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555566777888888888899999999999999999999999999988877776643332222222222222211
Q ss_pred HHHHHHH--HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCC
Q 000720 503 FLFWASP--TLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPIT 580 (1333)
Q Consensus 503 ~~~~~~p--~lv~~~tF~~~~~~~~~Lt~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~~ 580 (1333)
.+..... ..+.++.++.+....+.++++.+..++.++..+..|+..+...+..+.+++.+++||.++++.+++.+...
T Consensus 253 ~~~~~~~~~~~~~i~~~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~ 332 (582)
T PRK11176 253 PIIQLIASLALAFVLYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQEKDEGK 332 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCC
Confidence 1111111 22334556667667788999999999999999999999999999999999999999999998765321111
Q ss_pred CCCCCCCCccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC
Q 000720 581 EPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG 659 (1333)
Q Consensus 581 ~~~~~~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g 659 (1333)
. ........|+++|++|+|+++ +.++|+| |+++++||+++|+|+||||||||+++|+|+++|.+|++ .++|
T Consensus 333 ~-~~~~~~~~i~~~~vsf~y~~~------~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I-~i~g 404 (582)
T PRK11176 333 R-VIERAKGDIEFRNVTFTYPGK------EVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEI-LLDG 404 (582)
T ss_pred c-CCCCCCCeEEEEEEEEecCCC------CCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceE-EECC
Confidence 1 111223469999999999753 3579999 99999999999999999999999999999999999986 7766
Q ss_pred -------------eEEEEcCCCCCCCCCHHHHhccCCc--CCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChH
Q 000720 660 -------------KKAYVPQSSWIQTGTIRENILFGKD--MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGG 724 (1333)
Q Consensus 660 -------------~iayv~Q~~~i~~~Tv~enI~~g~~--~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGG 724 (1333)
.++|+||+|.++++|++|||.+|.+ .+++..+++++.+++.++++.+|+|.+|.+|++|.+||||
T Consensus 405 ~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGG 484 (582)
T PRK11176 405 HDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGG 484 (582)
T ss_pred EEhhhcCHHHHHhhceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHH
Confidence 4699999999999999999999853 6788899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhcCCEEEEEeCCeEEEccChH
Q 000720 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYE 804 (1333)
Q Consensus 725 QkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~aD~i~vl~~G~i~~~g~~~ 804 (1333)
||||++||||++++|++++|||||||||+++++.+++.+ ....+++|+|+|||+++.++.||+|++|++|+|++.|+++
T Consensus 485 qrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l-~~~~~~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e~g~~~ 563 (582)
T PRK11176 485 QRQRIAIARALLRDSPILILDEATSALDTESERAIQAAL-DELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHA 563 (582)
T ss_pred HHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHH-HHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999887654 4556789999999999999999999999999999999999
Q ss_pred HHHhhcchHHHHHHH
Q 000720 805 DLIADQNSELVRQMK 819 (1333)
Q Consensus 805 ~l~~~~~~~~~~~~~ 819 (1333)
++++ .+..+.++..
T Consensus 564 ~l~~-~~~~y~~l~~ 577 (582)
T PRK11176 564 ELLA-QNGVYAQLHK 577 (582)
T ss_pred HHHh-CCChHHHHHH
Confidence 9997 4556666554
No 17
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=2e-60 Score=599.99 Aligned_cols=538 Identities=18% Similarity=0.224 Sum_probs=423.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 267 QVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIG 346 (1333)
Q Consensus 267 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~~~ 346 (1333)
+.+++.+++.++...++.++..++....|+++..+++..-.... ... -+.+++.+++..++..+......+...+.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 82 (571)
T TIGR02203 6 WSYVRPYKAGLVLAGVAMILVAATESTLAALLKPLLDDGFGGRD--RSV-LWWVPLVVIGLAVLRGICSFVSTYLLSWVS 82 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCc--hhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788889899999999999999999999988875433221 111 122222233333334444333444566777
Q ss_pred HHHHHHHHHHHHHHHhccccC---CCChHHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 000720 347 IRVRSALTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGAAPAFAAL 422 (1333)
Q Consensus 347 ~rir~~l~~~iy~K~L~ls~~---~~~~G~i~nlms~D~~~i~~~~~-~~~~~w~~plqi~~~l~lL~~~lG~~a~l~gl 422 (1333)
.++...+...+|+|.++.+.. ..+.|++.|.++.|++++.++.. .+..++...+.+++++.+++. ++|+.+++.+
T Consensus 83 ~~~~~~lr~~l~~~~~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~~l~~-~~~~l~~i~l 161 (571)
T TIGR02203 83 NKVVRDIRVRMFEKLLGLPVSFFDRQPTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLY-YSWQLTLIVV 161 (571)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHH
Confidence 777777778888888877643 23889999999999999998764 455555555666666655554 3325555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 423 FSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIA 502 (1333)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~R~~~~~E~L~~Ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~a~~~ 502 (1333)
+++++.+.+...+.+..++..++..+..+++.+..+|.++|+++||.++.|+.+.++.++..++..+...+.....+...
T Consensus 162 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (571)
T TIGR02203 162 VMLPVLSILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSISS 241 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666677888888899999999999999999999999999999999999888887766555544443333333222
Q ss_pred HHHHHHHH--HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCC
Q 000720 503 FLFWASPT--LVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPIT 580 (1333)
Q Consensus 503 ~~~~~~p~--lv~~~tF~~~~~~~~~Lt~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~~ 580 (1333)
.+...... .+.++.++.+.+..+.+|++.+++++.++..+..|+..+...+..+.+++++.+||.++++.+++.+...
T Consensus 242 ~~~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~ 321 (571)
T TIGR02203 242 PITQLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDTGT 321 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Confidence 22222221 2334556777777889999999999999999999999999999999999999999999998765322111
Q ss_pred CCCCCCCCccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC
Q 000720 581 EPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG 659 (1333)
Q Consensus 581 ~~~~~~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g 659 (1333)
. +....+..|+++|++|+|+++ +.++|++ |+++++||+++|+|+||||||||+++|+|+++|.+|++ .++|
T Consensus 322 ~-~~~~~~~~i~~~~v~f~y~~~------~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I-~i~g 393 (571)
T TIGR02203 322 R-AIERARGDVEFRNVTFRYPGR------DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQI-LLDG 393 (571)
T ss_pred C-CCCCCCCeEEEEEEEEEcCCC------CCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeE-EECC
Confidence 1 111223469999999999764 3578999 99999999999999999999999999999999999996 7776
Q ss_pred -------------eEEEEcCCCCCCCCCHHHHhccCC--cCCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChH
Q 000720 660 -------------KKAYVPQSSWIQTGTIRENILFGK--DMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGG 724 (1333)
Q Consensus 660 -------------~iayv~Q~~~i~~~Tv~enI~~g~--~~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGG 724 (1333)
+++|+||+|++|++|++|||.++. +.++++.+++++.|++.+++..+|+|.+|.+|++|.+||||
T Consensus 394 ~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgG 473 (571)
T TIGR02203 394 HDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGG 473 (571)
T ss_pred EeHHhcCHHHHHhhceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHH
Confidence 479999999999999999999985 47888899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhcCCEEEEEeCCeEEEccChH
Q 000720 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYE 804 (1333)
Q Consensus 725 QkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~aD~i~vl~~G~i~~~g~~~ 804 (1333)
||||++||||++++|+|++||||||+||+++++++.+.+ ....+++|+|+|||+.+.++.||+|++|++|++++.|+++
T Consensus 474 qrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L-~~~~~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~g~~~ 552 (571)
T TIGR02203 474 QRQRLAIARALLKDAPILILDEATSALDNESERLVQAAL-ERLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHN 552 (571)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHH-HHHhCCCEEEEEehhhHHHHhCCEEEEEeCCEEEeeCCHH
Confidence 999999999999999999999999999999999887654 4556789999999999999999999999999999999999
Q ss_pred HHHhhcchHHHHHH
Q 000720 805 DLIADQNSELVRQM 818 (1333)
Q Consensus 805 ~l~~~~~~~~~~~~ 818 (1333)
++++ .+..+.+..
T Consensus 553 ~l~~-~~~~~~~~~ 565 (571)
T TIGR02203 553 ELLA-RNGLYAQLH 565 (571)
T ss_pred HHHH-cCCHHHHHH
Confidence 9987 344454443
No 18
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=2.1e-60 Score=612.26 Aligned_cols=531 Identities=22% Similarity=0.266 Sum_probs=412.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 268 VIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGI 347 (1333)
Q Consensus 268 ~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~~~~ 347 (1333)
..++.+++.++...++.++..++..+.|+++..+++.+-.... ... -+.+++++++..++..++.....+...+.+.
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iiD~v~~~~~--~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (708)
T TIGR01193 149 PLITRQKKLIVNIVIAAIIVTLISIAGSYYLQKIIDTYIPHKM--MGT-LGIISIGLIIAYIIQQILSYIQIFLLNVLGQ 225 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC--hHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677778788888888999999999999999986643221 111 2223333444444455554444556677888
Q ss_pred HHHHHHHHHHHHHHhccccC---CCChHHHHHHHHhhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 000720 348 RVRSALTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFFLYI--HRIWLLPVQVFLALVILYKNLGAAPAFAAL 422 (1333)
Q Consensus 348 rir~~l~~~iy~K~L~ls~~---~~~~G~i~nlms~D~~~i~~~~~~~--~~~w~~plqi~~~l~lL~~~lG~~a~l~gl 422 (1333)
++...+...+|+|.++++.. .+++|+++|.++ |++++.++.... ..+...+. +++.+.+++.. .|+.++..+
T Consensus 226 ~~~~~l~~~~~~~ll~l~~~~f~~~~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~l~~~-~~~l~li~l 302 (708)
T TIGR01193 226 RLSIDIILSYIKHLFELPMSFFSTRRTGEIVSRFT-DASSIIDALASTILSLFLDMWI-LVIVGLFLVRQ-NMLLFLLSL 302 (708)
T ss_pred HHHHHHHHHHHHHHHcCCHHHhCCCchhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH-hHHHHHHHH
Confidence 88888999999999988753 348999999998 999998875422 22222333 33333333322 224444455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHH----HH
Q 000720 423 FSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLY----TC 498 (1333)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~R~~~~~E~L~~Ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~----~~ 498 (1333)
+++++.+.+...+.+..++..++.++..+++.+...|.++|+++||.+++|+.+.++.++..++..+...+... ..
T Consensus 303 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (708)
T TIGR01193 303 LSIPVYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKADQGQQ 382 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555667778888889999999999999999999999999999999999888876654433332222222 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCC-
Q 000720 499 SAIAFLFWASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKK- 577 (1333)
Q Consensus 499 a~~~~~~~~~p~lv~~~tF~~~~~~~~~Lt~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~- 577 (1333)
+...++.... .+.++++|++.+..+.+|.+.++++..++..+..|+..+...+..+.+++++.+||.++++.+++.+
T Consensus 383 ~~~~~~~~~~--~i~il~~g~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~ 460 (708)
T TIGR01193 383 AIKAVTKLIL--NVVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSEFIN 460 (708)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccc
Confidence 2222222222 2335677888888999999999999999999999999999999999999999999999998765221
Q ss_pred CCCCCCCCCCCccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEE
Q 000720 578 PITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIK 656 (1333)
Q Consensus 578 ~~~~~~~~~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~ 656 (1333)
.....+..+....|+++|++|+|+++ +++|+| |++|++||.++|+||||||||||+++|+|+++|++|++ .
T Consensus 461 ~~~~~~~~~~~~~I~~~~vsf~y~~~-------~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I-~ 532 (708)
T TIGR01193 461 KKKRTELNNLNGDIVINDVSYSYGYG-------SNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEI-L 532 (708)
T ss_pred cccccCCCCCCCcEEEEEEEEEcCCC-------CcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEE-E
Confidence 11111122234579999999999743 468999 99999999999999999999999999999999999996 7
Q ss_pred ECC-------------eEEEEcCCCCCCCCCHHHHhccCC--cCCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCC
Q 000720 657 VHG-------------KKAYVPQSSWIQTGTIRENILFGK--DMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINL 721 (1333)
Q Consensus 657 ~~g-------------~iayv~Q~~~i~~~Tv~enI~~g~--~~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~L 721 (1333)
++| +++||||+|++|++||+|||.++. ..++++..++++.+++.++++.+|.|.+|.+|++|.+|
T Consensus 533 idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~L 612 (708)
T TIGR01193 533 LNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSI 612 (708)
T ss_pred ECCEEHHHcCHHHHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCC
Confidence 776 479999999999999999999983 45677788889999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhcCCEEEEEeCCeEEEcc
Q 000720 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSG 801 (1333)
Q Consensus 722 SGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~aD~i~vl~~G~i~~~g 801 (1333)
|||||||++||||++++|+++|||||||+||+++.+++.+.+. .. +++|+|+|||+++.+..||+|++|++|++++.|
T Consensus 613 SgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~-~~-~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~G 690 (708)
T TIGR01193 613 SGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLL-NL-QDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQG 690 (708)
T ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHH-Hh-cCCEEEEEecchHHHHcCCEEEEEECCEEEEEC
Confidence 9999999999999999999999999999999999888877654 33 689999999999999999999999999999999
Q ss_pred ChHHHHhhcchHHHHH
Q 000720 802 KYEDLIADQNSELVRQ 817 (1333)
Q Consensus 802 ~~~~l~~~~~~~~~~~ 817 (1333)
+++++++ ..+.+.++
T Consensus 691 ~~~~L~~-~~~~y~~l 705 (708)
T TIGR01193 691 SHDELLD-RNGFYASL 705 (708)
T ss_pred CHHHHHh-cCCcHHHH
Confidence 9999987 34444443
No 19
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=1.2e-59 Score=594.16 Aligned_cols=538 Identities=20% Similarity=0.250 Sum_probs=406.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 268 VIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGI 347 (1333)
Q Consensus 268 ~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~~~~ 347 (1333)
...+.+++.++...++.++..++..+.|+++..+++.+....+. .......+++++++..++..+......+...+.+.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (592)
T PRK10790 16 AYGSPWRKPLGLAVLMLWVAAAAEVSGPLLISYFIDNMVAKGNL-PLGLVAGLAAAYVGLQLLAAGLHYAQSLLFNRAAV 94 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677788888888889999999999999999876432221 11111222333333444445555555556677788
Q ss_pred HHHHHHHHHHHHHHhcccc---CCCChHHHHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 000720 348 RVRSALTVLIYKRSMAIKF---AGPSSGIIINMINVDVERIGDFFLYI-HRIWLLPVQVFLALVILYKNLGAAPAFAALF 423 (1333)
Q Consensus 348 rir~~l~~~iy~K~L~ls~---~~~~~G~i~nlms~D~~~i~~~~~~~-~~~w~~plqi~~~l~lL~~~lG~~a~l~gl~ 423 (1333)
++...+...+|+|.++.+. ...+.|+++|.++.|++++.++.... ..+....+.+++++.+++ .++|+.+++.++
T Consensus 95 ~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~li~l~ 173 (592)
T PRK10790 95 GVVQQLRTDVMDAALRQPLSAFDTQPVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMF-SLDWRMALVAIM 173 (592)
T ss_pred HHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 8888888889999988764 23489999999999999998865432 233333333333333332 233233333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchHHHHHHHHHHHHHHHHHH-HHHHHHHHHH--
Q 000720 424 STIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDS-LKKYLYTCSA-- 500 (1333)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~D~R~~~~~E~L~~Ir~IK~~~wE~~f~~~i~~~R~~E~~~-l~~~~~~~a~-- 500 (1333)
++.+.+.+.....+..++..++..+..++-.+...|.++|+++||.|+.|+.+.++..+..++..+. .++.......
T Consensus 174 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (592)
T PRK10790 174 IFPAVLVVMVIYQRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTLRLDGFLLR 253 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333445556666777777777888888999999999999999999999998888765443332 2222211110
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCC
Q 000720 501 -IAFLFWASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPI 579 (1333)
Q Consensus 501 -~~~~~~~~p~lv~~~tF~~~~~~~~~Lt~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~ 579 (1333)
...++.....++.++ .+.+ ...+.++.+.++.++.++..+..|+..++.....+.++++|.+||.++++.++++...
T Consensus 254 ~~~~~~~~~~~~~~~~-~~~~-~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~ 331 (592)
T PRK10790 254 PLLSLFSALILCGLLM-LFGF-SASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGPRQQYGN 331 (592)
T ss_pred HHHHHHHHHHHHHHHH-HHHH-HHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCCC
Confidence 111111111111112 2223 3567799999999999999999999999999999999999999999999876532111
Q ss_pred CCCCCCCCCccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEEC
Q 000720 580 TEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVH 658 (1333)
Q Consensus 580 ~~~~~~~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~ 658 (1333)
... ......|+++|++|+|+++ .++|+| |+++++||+++|+|+||||||||+++|+|+++|.+|++ .++
T Consensus 332 ~~~--~~~~~~i~~~~v~f~y~~~-------~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I-~id 401 (592)
T PRK10790 332 DDR--PLQSGRIDIDNVSFAYRDD-------NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEI-RLD 401 (592)
T ss_pred Ccc--CCCCCeEEEEEEEEEeCCC-------CceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceE-EEC
Confidence 111 1123469999999999743 468999 99999999999999999999999999999999999986 777
Q ss_pred C-------------eEEEEcCCCCCCCCCHHHHhccCCcCCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHH
Q 000720 659 G-------------KKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (1333)
Q Consensus 659 g-------------~iayv~Q~~~i~~~Tv~enI~~g~~~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQ 725 (1333)
| +++||||+|.+|++|++|||.++.+.++++..++++.+++.++++.+|+|.+|.+|++|.+|||||
T Consensus 402 g~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGq 481 (592)
T PRK10790 402 GRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQ 481 (592)
T ss_pred CEEhhhCCHHHHHhheEEEccCCccccchHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHH
Confidence 6 379999999999999999999998888888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhcCCEEEEEeCCeEEEccChHH
Q 000720 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYED 805 (1333)
Q Consensus 726 kqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~aD~i~vl~~G~i~~~g~~~~ 805 (1333)
|||++||||++++|+|+|||||||+||+++.+++.+. ++...+++|+|+|||+++.++.||+|++|++|++++.|+++|
T Consensus 482 rQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~-l~~~~~~~tvIivtHr~~~l~~~D~ii~l~~G~i~~~G~~~~ 560 (592)
T PRK10790 482 KQLLALARVLVQTPQILILDEATANIDSGTEQAIQQA-LAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQ 560 (592)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHH-HHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 9999999999999999999999999999998888664 455567899999999999999999999999999999999999
Q ss_pred HHhhcchHHHHHHHhh
Q 000720 806 LIADQNSELVRQMKAH 821 (1333)
Q Consensus 806 l~~~~~~~~~~~~~~~ 821 (1333)
+++ .+..+.++....
T Consensus 561 L~~-~~~~y~~l~~~~ 575 (592)
T PRK10790 561 LLA-AQGRYWQMYQLQ 575 (592)
T ss_pred HHh-CCCHHHHHHHHH
Confidence 997 456777666543
No 20
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=2.4e-59 Score=590.58 Aligned_cols=541 Identities=19% Similarity=0.257 Sum_probs=410.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 266 PQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRI 345 (1333)
Q Consensus 266 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~~ 345 (1333)
++.+++.+++.+....++.++..++..+.|+++..+++.+-...+. . . -..++..+++..++..+......+...++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~-~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (576)
T TIGR02204 9 LWPFVRPYRGRVLAALVALLITAAATLSLPYAVRLMIDHGFSKDSS-G-L-LNRYFAFLLVVALVLALGTAARFYLVTWL 85 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcccccH-H-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566777788888888899999999999999999873222211 1 1 11122222222233334444455666788
Q ss_pred HHHHHHHHHHHHHHHHhccccC---CCChHHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 000720 346 GIRVRSALTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGAAPAFAA 421 (1333)
Q Consensus 346 ~~rir~~l~~~iy~K~L~ls~~---~~~~G~i~nlms~D~~~i~~~~~-~~~~~w~~plqi~~~l~lL~~~lG~~a~l~g 421 (1333)
+.++...+...+|+|.++.+.. ..+.|+++|.++.|++.+.++.. .+..+....+.+++++++++..-. +.+++.
T Consensus 86 ~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~ 164 (576)
T TIGR02204 86 GERVVADIRRAVFAHLISLSPSFFDKNRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSP-KLTSLV 164 (576)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHH
Confidence 8899999999999999987542 23889999999999999988753 344444444444444443332222 222322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 422 LFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAI 501 (1333)
Q Consensus 422 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~R~~~~~E~L~~Ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~a~~ 501 (1333)
++.+++.+.+...+.+..++..++.++..++..+...|.++|+++||.+++|+.+.++.++..++..+...+.....+..
T Consensus 165 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (576)
T TIGR02204 165 LLAVPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRTRALL 244 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344557777788888889999999999999999999999999999988888776554444333322222221
Q ss_pred HHHHH--HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC-CCC
Q 000720 502 AFLFW--ASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQ-KKP 578 (1333)
Q Consensus 502 ~~~~~--~~p~lv~~~tF~~~~~~~~~Lt~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~-~~~ 578 (1333)
..+.. .....+..+.++++.+..+.+|.+.++++..++..+..|+..++..+..+.+++++++||.++++.+++ +..
T Consensus 245 ~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~ 324 (576)
T TIGR02204 245 TAIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKAP 324 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCC
Confidence 11111 112233445567777778899999999999999999999999999999999999999999999987552 111
Q ss_pred CCC-CCCCCCCccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEE
Q 000720 579 ITE-PTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIK 656 (1333)
Q Consensus 579 ~~~-~~~~~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~ 656 (1333)
... ....+....|+++|++|+|+.+ +.++.|+| ||+++|||+++|+|+||||||||+++|+|+++|.+|++ .
T Consensus 325 ~~~~~~~~~~~~~i~~~~v~f~y~~~-----~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I-~ 398 (576)
T TIGR02204 325 AHPKTLPVPLRGEIEFEQVNFAYPAR-----PDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRI-L 398 (576)
T ss_pred CCCccCCcCCCceEEEEEEEEECCCC-----CCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEE-E
Confidence 111 1111123469999999999864 33578999 99999999999999999999999999999999999986 7
Q ss_pred ECC-------------eEEEEcCCCCCCCCCHHHHhccCCc-CCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCC
Q 000720 657 VHG-------------KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLS 722 (1333)
Q Consensus 657 ~~g-------------~iayv~Q~~~i~~~Tv~enI~~g~~-~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LS 722 (1333)
++| .++|+||+|+++++|++|||.++.+ .++++..++++.+++.++++.+|.|.+|.+|++|.+||
T Consensus 399 i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LS 478 (576)
T TIGR02204 399 LDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLS 478 (576)
T ss_pred ECCEEHHhcCHHHHHHhceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCC
Confidence 776 4799999999999999999999865 45677788899999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhcCCEEEEEeCCeEEEccC
Q 000720 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGK 802 (1333)
Q Consensus 723 GGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~aD~i~vl~~G~i~~~g~ 802 (1333)
||||||++||||++++|++++||||||+||+++++.+++. ++...+++|+|+|||+++.++.+|+|++|++|++++.|+
T Consensus 479 gGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~-l~~~~~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~g~ 557 (576)
T TIGR02204 479 GGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQA-LETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGT 557 (576)
T ss_pred HHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHH-HHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEeeec
Confidence 9999999999999999999999999999999998777654 455567899999999999999999999999999999999
Q ss_pred hHHHHhhcchHHHHHH
Q 000720 803 YEDLIADQNSELVRQM 818 (1333)
Q Consensus 803 ~~~l~~~~~~~~~~~~ 818 (1333)
++++.+ .+..+.++.
T Consensus 558 ~~~l~~-~~~~~~~l~ 572 (576)
T TIGR02204 558 HAELIA-KGGLYARLA 572 (576)
T ss_pred HHHHHH-cCChHHHHH
Confidence 999877 444555443
No 21
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=1.9e-59 Score=585.93 Aligned_cols=520 Identities=20% Similarity=0.224 Sum_probs=403.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 272 AVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRS 351 (1333)
Q Consensus 272 ~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~~~~rir~ 351 (1333)
.+++.++...++.++..++..+.|++++.+++.+-...+ ... -+.+++.+++..++..++.....+...+.+.++..
T Consensus 3 ~~k~~~~~~~~~~~~~~~~~l~~p~~~~~iid~~~~~~~--~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (544)
T TIGR01842 3 KNKSTFIIVGLFSFVINILMLAPPLYMLQVYDRVLTSGS--VPT-LLMLTVLALGLYLFLGLLDALRSFVLVRIGEKLDG 79 (544)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCc--hhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677788888888999999999999999986542221 111 23344445555555666666667777888999999
Q ss_pred HHHHHHHHHHhccccCCCChHHHHHHHHhhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 000720 352 ALTVLIYKRSMAIKFAGPSSGIIINMINVDVERIGDFFLY--IHRIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFVM 429 (1333)
Q Consensus 352 ~l~~~iy~K~L~ls~~~~~~G~i~nlms~D~~~i~~~~~~--~~~~w~~plqi~~~l~lL~~~lG~~a~l~gl~~~~~~~ 429 (1333)
.+...+|+|.++++.. ..+...+.+++|++++.++... +..+...++.++..+ +++..-+ +.++..++++++.+
T Consensus 80 ~lr~~~~~~ll~~~~~--~~~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~-~l~li~l~~~~l~~ 155 (544)
T TIGR01842 80 ALNQPIFAASFSATLR--RGKIDGLQALRDLDQLRQFLTGPGLFAFFDAPWMPIYLL-VCFLLHP-WIGILALGGAVVLV 155 (544)
T ss_pred HHHHHHHHHHhcCccc--CccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH-HHHHHhh-HHHHHHHHHHHHHH
Confidence 9999999999988763 3456678889999999886543 333334444333322 2221111 22233333233333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 430 VSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIAFLFWASP 509 (1333)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~D~R~~~~~E~L~~Ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~a~~~~~~~~~p 509 (1333)
.+.....+..++..++.++..+++.+.+.|.++|+++||.|++|+.+.++.++..++..+...+.....+....+.....
T Consensus 156 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (544)
T TIGR01842 156 GLALLNNRATKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKYFR 235 (544)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667777788889999999999999999999999999999999988877666554444333333332222222211
Q ss_pred --HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCC
Q 000720 510 --TLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPITEPTSKAS 587 (1333)
Q Consensus 510 --~lv~~~tF~~~~~~~~~Lt~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~~~~~~~~~ 587 (1333)
..+.++.++.+....+.+|++.+++++.++..+..|+..++..+..+.++++|.+||.++++.+++.+.... ....
T Consensus 236 ~~~~~~~~~~g~~l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~--~~~~ 313 (544)
T TIGR01842 236 IVLQSLVLGLGAYLAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDPAMP--LPEP 313 (544)
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCCCC--CCCC
Confidence 223345678887788899999999999999999999999999999999999999999999987653221111 1122
Q ss_pred CccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC-------
Q 000720 588 DVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG------- 659 (1333)
Q Consensus 588 ~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g------- 659 (1333)
+..|+++|++|+|+++ +++.++| |+++++||+++|+||||||||||+++|+|+++|.+|++ .++|
T Consensus 314 ~~~i~~~~v~~~y~~~------~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i-~~~g~~i~~~~ 386 (544)
T TIGR01842 314 EGHLSVENVTIVPPGG------KKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSV-RLDGADLKQWD 386 (544)
T ss_pred CCeEEEEEEEEEcCCC------CccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE-EECCEehhhCC
Confidence 3469999999999753 3578999 99999999999999999999999999999999999986 6665
Q ss_pred ------eEEEEcCCCCCCCCCHHHHhccCCc-CCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHH
Q 000720 660 ------KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLA 732 (1333)
Q Consensus 660 ------~iayv~Q~~~i~~~Tv~enI~~g~~-~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LA 732 (1333)
.++|+||+|+++++|++|||.++.+ .+++...++++.+++.+.++.+|+|.+|.+|++|.+||||||||++||
T Consensus 387 ~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lA 466 (544)
T TIGR01842 387 RETFGKHIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALA 466 (544)
T ss_pred HHHHhhheEEecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHH
Confidence 4799999999999999999986654 667777888888889899999999999999999999999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCeEEEecCchhhhhcCCEEEEEeCCeEEEccChHHHHh
Q 000720 733 RAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-LSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIA 808 (1333)
Q Consensus 733 RAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~-~~~~TvIlvtH~~~~l~~aD~i~vl~~G~i~~~g~~~~l~~ 808 (1333)
||++++|+++|||||||+||+++++++.+.+ ... .+++|+|++||+++.++.||+|++|++|++++.|+++++.+
T Consensus 467 Rall~~~~ililDEpts~LD~~~~~~i~~~l-~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 542 (544)
T TIGR01842 467 RALYGDPKLVVLDEPNSNLDEEGEQALANAI-KALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLA 542 (544)
T ss_pred HHHhcCCCEEEEeCCccccCHHHHHHHHHHH-HHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeCCHHHHhh
Confidence 9999999999999999999999988887654 444 36899999999999888899999999999999999998864
No 22
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.2e-59 Score=590.17 Aligned_cols=534 Identities=20% Similarity=0.288 Sum_probs=400.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCCchhHHHHHHHHHHHHHHHHHH--HHHHHHH--HHHHHHH
Q 000720 273 VWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKH-DHSSYHYGLVLASVFLFAKTVESL--TQRQWYF--GANRIGI 347 (1333)
Q Consensus 273 ~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~-~~~~~~~g~~l~~~l~~~~~~~~l--~~~~~~~--~~~~~~~ 347 (1333)
.|+.++++.+.+++..+..-+--+++..+++-...++ +.-..+... |++.+++..++..+ ..++|+| ...++.+
T Consensus 662 e~~~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~~~~~~~~~~~~-~al~f~~l~~~~~i~~~~q~~~f~~~ge~Lt~ 740 (1228)
T KOG0055|consen 662 EWPYLLLGSLGAAIRGATYPLFAYVFSQVLEAFYPPDDDELKREVRA-WALIFLGLGIVSGITNFLQHYFFGIAGEKLTK 740 (1228)
T ss_pred hhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCChHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666555444455666666443222 100111112 33333322222221 2234444 4678888
Q ss_pred HHHHHHHHHHHHHHhccccCCCChHHHHHHHHhhHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 000720 348 RVRSALTVLIYKRSMAIKFAGPSSGIIINMINVDVERIGDFFLY-----IHRIWLLPVQVFLALVILYKNLGAAPAFAAL 422 (1333)
Q Consensus 348 rir~~l~~~iy~K~L~ls~~~~~~G~i~nlms~D~~~i~~~~~~-----~~~~w~~plqi~~~l~lL~~~lG~~a~l~gl 422 (1333)
|+|......+.++...+-+..+.+|.+.+.+++|+..+...+.. +..+-....-++++++. ||-.++.++
T Consensus 741 R~R~~~F~~ll~qd~~wFD~~~nsg~l~~RLa~Da~~vr~~v~~rl~~vv~~~~~~~~~iiiaf~~-----~W~lalv~l 815 (1228)
T KOG0055|consen 741 RLRSMMFRALLRQEVGWFDDPENSGALSSRLATDASNVRAAVGDRLSLVVQNIAAVIIGIIIAFIY-----GWRLALVVL 815 (1228)
T ss_pred HHHHHHHHHHHcCCCcccCCCccchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHH
Confidence 98877766666666555555553399999999999877655422 22222333333444333 344556666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 000720 423 FSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRL-REIERDSLKKYLYTCSAI 501 (1333)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~R~~~~~E~L~~Ir~IK~~~wE~~f~~~i~~~-R~~E~~~l~~~~~~~a~~ 501 (1333)
++..++....+...+.+.+..++..++.++--++.+|++.|||+||.++-|++|.+...+. ++......|+.... .+.
T Consensus 816 a~~Pll~~~~~~~~~~~~~~~~~~~~~~~ea~~iA~eai~NIrTV~al~~e~~~~~~y~~~l~~p~~~~~~~~~i~-gl~ 894 (1228)
T KOG0055|consen 816 ATFPLLILSGYLQKKFLKGFSKDDKKAYEEASKIAIEAVSNIRTVAALCAEEKFMELYKEELEKPRKSSFKRGLIS-GLG 894 (1228)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 6667777777888888999999999999999999999999999999999999988776553 33333333333332 222
Q ss_pred HHHHHHHHHHH--HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC--CCC
Q 000720 502 AFLFWASPTLV--SVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDN--QKK 577 (1333)
Q Consensus 502 ~~~~~~~p~lv--~~~tF~~~~~~~~~Lt~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e--~~~ 577 (1333)
..+..+...++ ....||.++...+..++.++|.++..+.+-...+.+.....+.+..|+.|..+|.+.++.+. +.+
T Consensus 895 f~~sqs~~~~~~A~~f~~G~~Li~~g~~~~~~~~~vf~~l~~ta~~~~~~~s~~Pd~~ka~~Aa~~iF~i~dr~~~i~~~ 974 (1228)
T KOG0055|consen 895 FGFSQSLLFFVYALSFWYGARLISNGEMTFEDVFRVFMALSFTAMALGQASSYAPDISKAKIAAGSIFEILDRKPTIDPD 974 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHhcCCCCCCCC
Confidence 22222222222 24567777788889999999999998888888888888888899999999999999999887 222
Q ss_pred CCCCCCCCCCCccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEE
Q 000720 578 PITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIK 656 (1333)
Q Consensus 578 ~~~~~~~~~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~ 656 (1333)
.......+.-.+.|+++|++|+||++ ++.++++| |+++++|+.+|+|||+||||||.+.+|.+.++|++|.+ .
T Consensus 975 ~~~~~~~~~~~G~I~~~~V~F~YPsR-----P~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V-~ 1048 (1228)
T KOG0055|consen 975 STSGGKLPNVKGDIEFRNVSFAYPTR-----PDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKV-K 1048 (1228)
T ss_pred CCCCCccccceeEEEEeeeEeeCCCC-----CCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeE-E
Confidence 21111122345679999999999998 88999999 99999999999999999999999999999999999986 8
Q ss_pred ECC-------------eEEEEcCCCCCCCCCHHHHhccCC-cCCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCC
Q 000720 657 VHG-------------KKAYVPQSSWIQTGTIRENILFGK-DMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLS 722 (1333)
Q Consensus 657 ~~g-------------~iayv~Q~~~i~~~Tv~enI~~g~-~~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LS 722 (1333)
++| ++|.|+|+|.+|++||||||.+|. ...++...++.+.....+.+..+|+|.+|.+||+|.+||
T Consensus 1049 IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLS 1128 (1228)
T KOG0055|consen 1049 IDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLS 1128 (1228)
T ss_pred ECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCC
Confidence 876 479999999999999999999993 335555555555555677899999999999999999999
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhcCCEEEEEeCCeEEEccC
Q 000720 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGK 802 (1333)
Q Consensus 723 GGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~aD~i~vl~~G~i~~~g~ 802 (1333)
||||||||||||+.+||+||||||.|||||.+. +++.++.++....|+|.|+|+|+++.+++||.|+|++||+|+|+|+
T Consensus 1129 GGQKQRIAIARAilRnPkILLLDEATSALDseS-ErvVQeALd~a~~gRT~IvIAHRLSTIqnaD~I~Vi~~G~VvE~Gt 1207 (1228)
T KOG0055|consen 1129 GGQKQRIAIARAILRNPKILLLDEATSALDSES-ERVVQEALDRAMEGRTTIVIAHRLSTIQNADVIAVLKNGKVVEQGT 1207 (1228)
T ss_pred chHHHHHHHHHHHHcCCCeeeeeccchhhhhhh-HHHHHHHHHHhhcCCcEEEEecchhhhhcCCEEEEEECCEEEeccc
Confidence 999999999999999999999999999999987 5677888998999999999999999999999999999999999999
Q ss_pred hHHHHhhcchHHHHHHHhh
Q 000720 803 YEDLIADQNSELVRQMKAH 821 (1333)
Q Consensus 803 ~~~l~~~~~~~~~~~~~~~ 821 (1333)
+++|++ .++.+.+++..+
T Consensus 1208 H~~L~~-~~G~Y~~Lv~~q 1225 (1228)
T KOG0055|consen 1208 HDELLA-KRGIYFRLVQLQ 1225 (1228)
T ss_pred HHHHHh-CCCchHHHhhhc
Confidence 999998 777777776543
No 23
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=5e-59 Score=584.32 Aligned_cols=524 Identities=21% Similarity=0.270 Sum_probs=399.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 000720 285 GVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSALTVLIYKRSMAI 364 (1333)
Q Consensus 285 l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~~~~rir~~l~~~iy~K~L~l 364 (1333)
++..++..+.|++++.+++.+.+.... ... .+.+++.+++..++..++.....+...+.+.++...+...+|+|.+++
T Consensus 5 ~~~~~~~~~~p~~~~~iid~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~ 82 (569)
T PRK10789 5 IIIAMLQLIPPKVVGIIVDGVTEQHMT-TGQ-ILMWIGTMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQ 82 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCcc-hhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 444556667899999999876432211 111 223333344444444454444445556677888888888999999987
Q ss_pred ccC---CCChHHHHHHHHhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 365 KFA---GPSSGIIINMINVDVERIGDFF-LYIHRIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFVMVSNTPLANRQE 440 (1333)
Q Consensus 365 s~~---~~~~G~i~nlms~D~~~i~~~~-~~~~~~w~~plqi~~~l~lL~~~lG~~a~l~gl~~~~~~~~~~~~~~~~~~ 440 (1333)
+.. ..++|+++|.+++|++++.... ..+..++..++..++++++++..++|..+++.++++++.+.+...+.+...
T Consensus 83 ~~~~~~~~~~g~i~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~~ 162 (569)
T PRK10789 83 HPEFYLRHRTGDLMARATNDVDRVVFAAGEGVLTLVDSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLH 162 (569)
T ss_pred CHHHHcCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 642 3489999999999999998664 345566666555555554443345544555555555555556666777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
Q 000720 441 RFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIAFLFWASP--TLVSVITFG 518 (1333)
Q Consensus 441 ~~~~~~~~~~D~R~~~~~E~L~~Ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~a~~~~~~~~~p--~lv~~~tF~ 518 (1333)
+..++..+..++..+...|.++|+++||.+++|+.+.++..+.-++..+...+.....+....+..... ..+.++.++
T Consensus 163 ~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g 242 (569)
T PRK10789 163 ERFKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGGG 242 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777788888888889999999999999999999987777665433222222222222221111111111 122344567
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCCccEEEeeeEE
Q 000720 519 VCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPITEPTSKASDVAIDIEAGEY 598 (1333)
Q Consensus 519 ~~~~~~~~Lt~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~~~~~~~~~~~~I~i~~~~f 598 (1333)
.+.+.++.+|.+.+++++.++..+..|+..++..+..+.+++++.+||.++++.+++...... +....+..|+++|++|
T Consensus 243 ~~lv~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~~~~-~~~~~~~~I~~~~v~~ 321 (569)
T PRK10789 243 SWMVVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKDGSE-PVPEGRGELDVNIRQF 321 (569)
T ss_pred HHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCC-CCCCCCCcEEEEEEEE
Confidence 777778899999999999999999999999999999999999999999999987652111111 1112234699999999
Q ss_pred EcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC-------------eEEEE
Q 000720 599 AWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------------KKAYV 664 (1333)
Q Consensus 599 sw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g-------------~iayv 664 (1333)
+|+.+ +.+.|++ |+++++|++++|+||||||||||+++|+|+++|++|++ .++| +++|+
T Consensus 322 ~y~~~------~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i-~~~g~~~~~~~~~~~~~~i~~v 394 (569)
T PRK10789 322 TYPQT------DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDI-RFHDIPLTKLQLDSWRSRLAVV 394 (569)
T ss_pred ECCCC------CCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEE-EECCEEHhhCCHHHHHhheEEE
Confidence 99753 3468999 99999999999999999999999999999999999986 6765 47999
Q ss_pred cCCCCCCCCCHHHHhccCC-cCCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHHccCCCEEE
Q 000720 665 PQSSWIQTGTIRENILFGK-DMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYI 743 (1333)
Q Consensus 665 ~Q~~~i~~~Tv~enI~~g~-~~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ill 743 (1333)
+|+|+++++|++|||.++. +..++..+++++.+++.+++..+|+|.+|.+|++|.+||||||||++||||++++|+++|
T Consensus 395 ~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~ill 474 (569)
T PRK10789 395 SQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILI 474 (569)
T ss_pred ccCCeeccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999999999985 456777888889899999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhcCCEEEEEeCCeEEEccChHHHHhhcchHHHHHHHh
Q 000720 744 FDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKA 820 (1333)
Q Consensus 744 LDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~aD~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 820 (1333)
||||||+||+++.+++.+. ++...+++|+|++||+++.++.||+|++|++|++++.|+++++++ ..+.+.++...
T Consensus 475 lDEpts~LD~~~~~~i~~~-l~~~~~~~tii~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~-~~~~y~~l~~~ 549 (569)
T PRK10789 475 LDDALSAVDGRTEHQILHN-LRQWGEGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQ-QSGWYRDMYRY 549 (569)
T ss_pred EECccccCCHHHHHHHHHH-HHHHhCCCEEEEEecchhHHHcCCEEEEEeCCEEEEecCHHHHHH-cCChHHHHHHH
Confidence 9999999999999888775 445567899999999999999999999999999999999999987 45556665544
No 24
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=1.6e-58 Score=583.24 Aligned_cols=533 Identities=19% Similarity=0.254 Sum_probs=405.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 269 IIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIR 348 (1333)
Q Consensus 269 l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~~~~r 348 (1333)
.++.+++.+....++.++..++..+.|+++..+++.+..... . +. ++..+++..++..+......+...++..+
T Consensus 13 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~iid~~~~~~~--~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (588)
T PRK13657 13 YLGAEKRLGILLAVANVLLAAATFAEPILFGRIIDAISGKGD--I---FP-LLAAWAGFGLFNIIAGVLVARHADRLAHR 86 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc--H---HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777888888888999999999999999987654321 1 11 11111111222222233334456777888
Q ss_pred HHHHHHHHHHHHHhccccC---CCChHHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 000720 349 VRSALTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGAAPAFAALFS 424 (1333)
Q Consensus 349 ir~~l~~~iy~K~L~ls~~---~~~~G~i~nlms~D~~~i~~~~~-~~~~~w~~plqi~~~l~lL~~~lG~~a~l~gl~~ 424 (1333)
+|..+...+|+|.++++.. ..+.|++++.++.|++.+.+... .+..+....+-.++.+++++. ++++.+++.+++
T Consensus 87 ~~~~l~~~l~~~l~~~~~~~~~~~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~l~~l~~ 165 (588)
T PRK13657 87 RRLAVLTEYFERIIQLPLAWHSQRGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALF-MNWRLSLVLVVL 165 (588)
T ss_pred HHHHHHHHHHHHHHhCCHHHHCcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 8888999999999988642 33899999999999999876432 233332222222222222222 222333444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Q 000720 425 TIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRL----REIERDSLKKYLYTCSA 500 (1333)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~D~R~~~~~E~L~~Ir~IK~~~wE~~f~~~i~~~----R~~E~~~l~~~~~~~a~ 500 (1333)
+++...+...+.+..++.+++.++..++..+...|.++|+++||.|+.|+.+.+++.+. ++.+.+..+........
T Consensus 166 ~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (588)
T PRK13657 166 GIVYTLITTLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLSWWALASVL 245 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566777888888888999999999999999999999999999999876666543 33333333322222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCC-C
Q 000720 501 IAFLFWASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKP-I 579 (1333)
Q Consensus 501 ~~~~~~~~p~lv~~~tF~~~~~~~~~Lt~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~-~ 579 (1333)
..+. .....+.+++++++.+..+.+|.+.+++++.++..+..|+..+...+..+.+++.+++|+.++++.+++.+. .
T Consensus 246 ~~~~--~~~~~~~~~~~g~~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~ 323 (588)
T PRK13657 246 NRAA--STITMLAILVLGAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDVRDPP 323 (588)
T ss_pred HHHH--HHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCC
Confidence 2211 112234456678888888899999999999999999999999999999999999999999999987542111 1
Q ss_pred CCCCCCCCCccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEEC
Q 000720 580 TEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVH 658 (1333)
Q Consensus 580 ~~~~~~~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~ 658 (1333)
...+....+..|+++|++|+|+.+ +++|+| |+++++||+++|+|+||||||||+++|+|+++|.+|++ .++
T Consensus 324 ~~~~~~~~~~~I~~~~vsf~y~~~-------~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I-~i~ 395 (588)
T PRK13657 324 GAIDLGRVKGAVEFDDVSFSYDNS-------RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRI-LID 395 (588)
T ss_pred CCCCcCCCCCeEEEEEEEEEeCCC-------CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEE-EEC
Confidence 111111223469999999999743 358999 99999999999999999999999999999999999986 777
Q ss_pred C-------------eEEEEcCCCCCCCCCHHHHhccCCc-CCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChH
Q 000720 659 G-------------KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGG 724 (1333)
Q Consensus 659 g-------------~iayv~Q~~~i~~~Tv~enI~~g~~-~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGG 724 (1333)
| +++|+||+|+++++|+||||.++.+ .+++...++++.+++.+.+..+|+|.+|.+|++|.+||||
T Consensus 396 g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgG 475 (588)
T PRK13657 396 GTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGG 475 (588)
T ss_pred CEEhhhCCHHHHHhheEEEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHH
Confidence 6 5799999999999999999999864 5567777888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhcCCEEEEEeCCeEEEccChH
Q 000720 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYE 804 (1333)
Q Consensus 725 QkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~aD~i~vl~~G~i~~~g~~~ 804 (1333)
||||++||||++++|++++||||||+||+++++.+++.+ ....+++|+|+|||+++.++.||+|++|++|++++.|+++
T Consensus 476 q~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l-~~~~~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~g~~~ 554 (588)
T PRK13657 476 ERQRLAIARALLKDPPILILDEATSALDVETEAKVKAAL-DELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFD 554 (588)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHH-HHHhcCCEEEEEEecHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999998887654 4455689999999999999999999999999999999999
Q ss_pred HHHhhcchHHHHHHHh
Q 000720 805 DLIADQNSELVRQMKA 820 (1333)
Q Consensus 805 ~l~~~~~~~~~~~~~~ 820 (1333)
++++ ....+.++...
T Consensus 555 ~l~~-~~~~y~~l~~~ 569 (588)
T PRK13657 555 ELVA-RGGRFAALLRA 569 (588)
T ss_pred HHHH-CCChHHHHHHH
Confidence 9987 45566666553
No 25
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=1.7e-58 Score=579.60 Aligned_cols=537 Identities=20% Similarity=0.247 Sum_probs=396.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCC-CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 269 IIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLS-GKHDH-SSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIG 346 (1333)
Q Consensus 269 l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~-~~~~~-~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~~~ 346 (1333)
.++.+++.+++..++.++..++..+.|.++..+++-.- ..... .... ....++++++..++..++.....+...+.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~id~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (574)
T PRK11160 10 LYKRHWFMLSLGILLAIVTLLASIGLLTLSGWFLSASAVAGLAGLYSFN-YMLPAAGVRGAAIGRTAGRYGERLVSHDAT 88 (574)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHH-HHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777888888899999999999999999998532 21100 0011 111122233333344444444555666788
Q ss_pred HHHHHHHHHHHHHHHhccccC---CCChHHHHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 000720 347 IRVRSALTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFFLY-IHRIWLLPVQVFLALVILYKNLGAAPAFAAL 422 (1333)
Q Consensus 347 ~rir~~l~~~iy~K~L~ls~~---~~~~G~i~nlms~D~~~i~~~~~~-~~~~w~~plqi~~~l~lL~~~lG~~a~l~gl 422 (1333)
.++...+...+|+|.++++.. ..++|++++.+++|++++.++... +..+....+.+++++++++. +.|..++..+
T Consensus 89 ~~~~~~lR~~l~~~l~~~~~~~~~~~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~l~l~~~ 167 (574)
T PRK11160 89 FRVLTHLRVFTFSKLLPLSPAGLARYRQGDLLNRLVADVDTLDHLYLRLISPLVAALVVILVLTIGLSF-FDLTLALTLG 167 (574)
T ss_pred HHHHHHHHHHHHHHhhccChHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 888888899999999988653 238999999999999999987643 34444444444444443332 2212222222
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 423 FSTIFV-MVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAI 501 (1333)
Q Consensus 423 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~D~R~~~~~E~L~~Ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~a~~ 501 (1333)
+++.+. ..+...+.++.++..++..+..++..+.+.|.++|+++||.|+.|+.+.+++++..++-.+...+.....+..
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (574)
T PRK11160 168 GILLLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQWLAAQRRQANLTGLS 247 (574)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222211 2223455666677788888888888999999999999999999999888887765443333322222222222
Q ss_pred HHHHHHHH--HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCC
Q 000720 502 AFLFWASP--TLVSVITFGVCILLKTPLTSGAVLSALATFRI-LQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKP 578 (1333)
Q Consensus 502 ~~~~~~~p--~lv~~~tF~~~~~~~~~Lt~~~vft~lalf~~-l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~ 578 (1333)
..+..... ..+.++.++.+. ..+.++.+..++++.+..+ ...|+..++..+..+.++++|.+||.++++.+++.+.
T Consensus 248 ~~~~~~~~~~~~~~i~~~g~~~-~~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~ll~~~~~~~~ 326 (574)
T PRK11160 248 QALMILANGLTVVLMLWLAAGG-VGGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVIASARRINEITEQKPEVTF 326 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-hccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 22211111 122234455555 4667888887776655433 3468888999999999999999999999987652111
Q ss_pred CCCCCCCCCCccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEE
Q 000720 579 ITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKV 657 (1333)
Q Consensus 579 ~~~~~~~~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~ 657 (1333)
....+.......|+++|++|+|+++ ++++|+| |+++++||+++|+||||||||||+++|+|+++|++|++ .+
T Consensus 327 ~~~~~~~~~~~~i~~~~v~f~y~~~------~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I-~i 399 (574)
T PRK11160 327 PTTSTAAADQVSLTLNNVSFTYPDQ------PQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEI-LL 399 (574)
T ss_pred CcccCCCCCCCeEEEEEEEEECCCC------CCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE-EE
Confidence 1111111223579999999999753 2468999 99999999999999999999999999999999999996 77
Q ss_pred CC-------------eEEEEcCCCCCCCCCHHHHhccCCc-CCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCCh
Q 000720 658 HG-------------KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSG 723 (1333)
Q Consensus 658 ~g-------------~iayv~Q~~~i~~~Tv~enI~~g~~-~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSG 723 (1333)
+| .++||||+|++|++|++|||.++.+ .+++...++++.+++.++++. |+|.+|.+|++|.+|||
T Consensus 400 ~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~-p~GldT~vge~g~~LSg 478 (574)
T PRK11160 400 NGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGRQLSG 478 (574)
T ss_pred CCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcC-ccccCchhcCCCCCCCH
Confidence 76 3799999999999999999999865 567778889999999999999 99999999999999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhcCCEEEEEeCCeEEEccCh
Q 000720 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKY 803 (1333)
Q Consensus 724 GQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~aD~i~vl~~G~i~~~g~~ 803 (1333)
|||||++||||++++|++++||||||+||+++++++.+. +....+++|+|++||+++.++.||+|++|++|++++.|++
T Consensus 479 GqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~-l~~~~~~~tviiitHr~~~~~~~d~i~~l~~G~i~~~g~~ 557 (574)
T PRK11160 479 GEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILEL-LAEHAQNKTVLMITHRLTGLEQFDRICVMDNGQIIEQGTH 557 (574)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH-HHHHcCCCEEEEEecChhHHHhCCEEEEEeCCeEEEeCCH
Confidence 999999999999999999999999999999998887764 4555678999999999999999999999999999999999
Q ss_pred HHHHhhcchHHHHHH
Q 000720 804 EDLIADQNSELVRQM 818 (1333)
Q Consensus 804 ~~l~~~~~~~~~~~~ 818 (1333)
+|+++ .++.+.++.
T Consensus 558 ~~l~~-~~g~y~~l~ 571 (574)
T PRK11160 558 QELLA-QQGRYYQLK 571 (574)
T ss_pred HHHHh-cCcHHHHHH
Confidence 99987 455555543
No 26
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=1.1e-58 Score=578.21 Aligned_cols=498 Identities=17% Similarity=0.204 Sum_probs=374.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 269 IIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVL-ASVFLFAKTVESLTQRQWYFGANRIGI 347 (1333)
Q Consensus 269 l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~g~~l-~~~l~~~~~~~~l~~~~~~~~~~~~~~ 347 (1333)
..+.+++.++...++.++..++..+.|++++.+++....... .. .+.+ ..++++..++..+......+...+.+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (529)
T TIGR02868 7 LLQPRTRRLVVAILLGALALGSAVALLGVSAWLISRAAEMPP--VL--YLSVAAVAVRAFGIGRAVFRYLERLVGHDAAL 82 (529)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch--hH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667777788888888999999999999999986543221 11 1111 111112223333333334445566777
Q ss_pred HHHHHHHHHHHHHHhccccCC---CChHHHHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 000720 348 RVRSALTVLIYKRSMAIKFAG---PSSGIIINMINVDVERIGDFFLY-IHRIWLLPVQVFLALVILYKNLGAAPAFAALF 423 (1333)
Q Consensus 348 rir~~l~~~iy~K~L~ls~~~---~~~G~i~nlms~D~~~i~~~~~~-~~~~w~~plqi~~~l~lL~~~lG~~a~l~gl~ 423 (1333)
++...+...+|+|.++++... .++|+++|.++.|++++.+.... +..+....+.+++++++++. +.|..++..++
T Consensus 83 ~~~~~lr~~~~~~ll~~~~~~~~~~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~l~l~~l~ 161 (529)
T TIGR02868 83 RSLGRLRVRVYDRLARLALAGRRRFQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGSAAVAAIAL-LSVPAALVLAA 161 (529)
T ss_pred HHHHHHHHHHHHHhhccCccccccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHH
Confidence 888888899999999887632 38999999999999999987653 33344444444444444332 22233333333
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 424 STIFVMVSNTPL-ANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIA 502 (1333)
Q Consensus 424 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~D~R~~~~~E~L~~Ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~a~~~ 502 (1333)
.++++.++...+ .+..++..++..+..++..+...|.++|+++||.|++|+.+.++.++..++..+...+.....+...
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (529)
T TIGR02868 162 GLLLAGFVAPLVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRELLAAERRAARATGLGA 241 (529)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 323322222233 3334556667778889999999999999999999999999999988866555444444443333333
Q ss_pred HHHHHHHH--HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCC
Q 000720 503 FLFWASPT--LVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPIT 580 (1333)
Q Consensus 503 ~~~~~~p~--lv~~~tF~~~~~~~~~Lt~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~~ 580 (1333)
.+...... .+.++.++.+.+.++.++.+.+.+.+.+...+..|+..++..+..+.++++|.+||.++++.+++.+...
T Consensus 242 ~~~~~~~~~~~~~~~~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~ 321 (529)
T TIGR02868 242 AAQLLAAGLAVLGALWAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAKGPRPEGV 321 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCCC
Confidence 22222222 2233456677777888999999999999999999999999999999999999999999998765211111
Q ss_pred -C--CCCCCCCccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEE
Q 000720 581 -E--PTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIK 656 (1333)
Q Consensus 581 -~--~~~~~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~ 656 (1333)
. .+.......|+++|++|+|+++ +++|+| |+++++||+++|+||+|||||||+++|+|+++|++|++ .
T Consensus 322 ~~~~~~~~~~~~~I~~~~vsf~Y~~~-------~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I-~ 393 (529)
T TIGR02868 322 VPAAGALGLGKPTLELRDLSFGYPGS-------PPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEV-T 393 (529)
T ss_pred CCCCcccCCCCceEEEEEEEEecCCC-------CceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEE-E
Confidence 0 0011123469999999999754 358999 99999999999999999999999999999999999996 8
Q ss_pred ECC------------eEEEEcCCCCCCCCCHHHHhccCCc-CCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCCh
Q 000720 657 VHG------------KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSG 723 (1333)
Q Consensus 657 ~~g------------~iayv~Q~~~i~~~Tv~enI~~g~~-~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSG 723 (1333)
++| +++||||+|++|++||||||.+|.+ .++++.+++++.++++++++.+|+|.+|.+|++|.+|||
T Consensus 394 i~g~~i~~~~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSG 473 (529)
T TIGR02868 394 LDGVSVSSLQDELRRRISVFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSG 473 (529)
T ss_pred ECCEEhhhHHHHHHhheEEEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCH
Confidence 887 7899999999999999999999864 577889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCch
Q 000720 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQL 780 (1333)
Q Consensus 724 GQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~ 780 (1333)
|||||++||||++++|+|++||||||+||+++++.+.+.+ ....+++|+|+|||++
T Consensus 474 GQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l-~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 474 GERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDL-LAALSGKTVVVITHHL 529 (529)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH-HHhcCCCEEEEEecCC
Confidence 9999999999999999999999999999999988887754 4556789999999984
No 27
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=3.8e-58 Score=589.62 Aligned_cols=540 Identities=19% Similarity=0.223 Sum_probs=418.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 266 PQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRI 345 (1333)
Q Consensus 266 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~~ 345 (1333)
++..++.+++.+....+..++..++..+.|++++.+++.+-...+. .. -+.+++++++..++..++.....+...++
T Consensus 130 ~~~~~~~~~~~~~~~~~~s~~~~ll~l~~p~~~~~iid~v~~~~~~--~~-l~~l~~~~~~~~~~~~~~~~l~~~~~~~~ 206 (694)
T TIGR01846 130 FIPAIIRYRKQFREVLLISLALQLFALVTPLLFQVVIDKVLVHRGL--ST-LSVLALAMLAVAIFEPALGGLRTYLFAHL 206 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCh--hH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345566777788888888888888999999999999866432211 11 23334444444455555555556667778
Q ss_pred HHHHHHHHHHHHHHHHhccccC---CCChHHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 000720 346 GIRVRSALTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGAAPAFAA 421 (1333)
Q Consensus 346 ~~rir~~l~~~iy~K~L~ls~~---~~~~G~i~nlms~D~~~i~~~~~-~~~~~w~~plqi~~~l~lL~~~lG~~a~l~g 421 (1333)
+.++...+...+|+|.++++.. .+++|+++|.+ .|++.+.++.. .+..+....+.+++.+++++..-+ +.++..
T Consensus 207 ~~~~~~~l~~~~~~~l~~l~~~~f~~~~~g~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~l~li~ 284 (694)
T TIGR01846 207 TSRIDVELGARLYRHLLGLPLGYFESRRVGDTVARV-RELEQIRNFLTGSALTVVLDLLFVVVFLAVMFFYSP-TLTGVV 284 (694)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHcCCCCHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 8889999999999999988653 34899999999 69999998753 233333233333333434443222 444555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 422 LFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAI 501 (1333)
Q Consensus 422 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~R~~~~~E~L~~Ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~a~~ 501 (1333)
++++++...+...+.+..++..++.++..+++.+.+.|.++|+++||.++.|+.+.++..+.-++..+...+.....+..
T Consensus 285 l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (694)
T TIGR01846 285 IGSLVCYALLSVFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLGNIA 364 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555566667777788888888899999999999999999999999999888887765444444333333332222
Q ss_pred HHHHHHHH--HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCC
Q 000720 502 AFLFWASP--TLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPI 579 (1333)
Q Consensus 502 ~~~~~~~p--~lv~~~tF~~~~~~~~~Lt~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~ 579 (1333)
..+..... ..+.++.+|++.+..+.+|.|.+++...+...+..|+..+...+..+.+++++++|+.++++.+++.+..
T Consensus 365 ~~~~~~i~~~~~~~il~~g~~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~ 444 (694)
T TIGR01846 365 GQAIELIQKLTFAILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPRSA 444 (694)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCC
Confidence 22222111 1233456788877888999999999999999999999999999999999999999999999876532211
Q ss_pred CCCCCCCCCccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEEC
Q 000720 580 TEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVH 658 (1333)
Q Consensus 580 ~~~~~~~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~ 658 (1333)
...+....+..|+++|++|+|+++ .+++|++ |+++++||.++|+|+||||||||+++|+|+++|.+|++ .++
T Consensus 445 ~~~~~~~~~~~i~~~~vsf~y~~~------~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I-~id 517 (694)
T TIGR01846 445 GLAALPELRGAITFENIRFRYAPD------SPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQV-LVD 517 (694)
T ss_pred CCCCCCCCCCeEEEEEEEEEcCCC------CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE-EEC
Confidence 111112224579999999999754 3468999 99999999999999999999999999999999999986 777
Q ss_pred C-------------eEEEEcCCCCCCCCCHHHHhccCCc-CCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChH
Q 000720 659 G-------------KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGG 724 (1333)
Q Consensus 659 g-------------~iayv~Q~~~i~~~Tv~enI~~g~~-~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGG 724 (1333)
| +++||||+|+++++|++|||.++.+ .+++...++++.+++.+.++.+|.|.+|.+|++|.+||||
T Consensus 518 g~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgG 597 (694)
T TIGR01846 518 GVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGG 597 (694)
T ss_pred CEehhhCCHHHHHHhCeEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHH
Confidence 6 3699999999999999999999764 5567777888888999999999999999999999999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhcCCEEEEEeCCeEEEccChH
Q 000720 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYE 804 (1333)
Q Consensus 725 QkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~aD~i~vl~~G~i~~~g~~~ 804 (1333)
||||++||||++++|+++|||||||+||+++.+++.+.+ +...+++|+|++||+++.++.||+|++|++|+|++.|+++
T Consensus 598 q~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l-~~~~~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~g~~~ 676 (694)
T TIGR01846 598 QRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNM-REICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHE 676 (694)
T ss_pred HHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHH-HHHhCCCEEEEEeCChHHHHhCCEEEEEeCCEEEEeCCHH
Confidence 999999999999999999999999999999988887654 4556789999999999999999999999999999999999
Q ss_pred HHHhhcchHHHHHHH
Q 000720 805 DLIADQNSELVRQMK 819 (1333)
Q Consensus 805 ~l~~~~~~~~~~~~~ 819 (1333)
++++ .++.+.++..
T Consensus 677 ~l~~-~~~~y~~l~~ 690 (694)
T TIGR01846 677 ELLA-LQGLYARLWQ 690 (694)
T ss_pred HHHH-cCChHHHHHH
Confidence 9987 4556666554
No 28
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=5.3e-57 Score=566.88 Aligned_cols=533 Identities=17% Similarity=0.274 Sum_probs=404.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 269 IIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIR 348 (1333)
Q Consensus 269 l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~~~~r 348 (1333)
.++.+++.++...++.++..++..+.|+++..+++.+.+.+. .. . +++..++..++..+......+...++..+
T Consensus 13 ~l~~~k~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~---~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (585)
T TIGR01192 13 YLNVHKNRVLLIVIANITLAAITIAEPILFGRIIDAISSKSD---VL-P--TLALWAGFGVFNTIAYVLVAREADRLAHG 86 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc---HH-H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456678888888889999999999999999999987643221 11 1 11111122233333333444556778888
Q ss_pred HHHHHHHHHHHHHhccccC---CCChHHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 000720 349 VRSALTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGAAPAFAALFS 424 (1333)
Q Consensus 349 ir~~l~~~iy~K~L~ls~~---~~~~G~i~nlms~D~~~i~~~~~-~~~~~w~~plqi~~~l~lL~~~lG~~a~l~gl~~ 424 (1333)
+|..+...+|+|.++++.. ..++|++++.++.|++.+.++.. .+..+....+.+++++++++. +.|..++..+++
T Consensus 87 ~~~~lr~~~~~~l~~l~~~~~~~~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~l~li~l~~ 165 (585)
T TIGR01192 87 RRATLLTEAFGRIISMPLSWHQQRGTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFA-MDWRLSIVLMVL 165 (585)
T ss_pred HHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 9999999999999988753 34899999999999999987643 334444444545444333332 222334444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Q 000720 425 TIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLRE----IERDSLKKYLYTCSA 500 (1333)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~D~R~~~~~E~L~~Ir~IK~~~wE~~f~~~i~~~R~----~E~~~l~~~~~~~a~ 500 (1333)
+++...+...+.+..++.+++..+..++..+.+.|.++|+++||.++.|+.+.+++.+.-+ .+.+..+........
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (585)
T TIGR01192 166 GILYILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLDWWALASGL 245 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555566777777888888888889999999999999999999999888777665433 222222222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC-CCC
Q 000720 501 IAFLFWASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQK-KPI 579 (1333)
Q Consensus 501 ~~~~~~~~p~lv~~~tF~~~~~~~~~Lt~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~-~~~ 579 (1333)
..++... ..+.++.++.+.+..+.++.+.+++++.++..+..|+..++..+..+.+++++++|+.++++.+++. +..
T Consensus 246 ~~~~~~~--~~~~v~~~g~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~ 323 (585)
T TIGR01192 246 NRMASTI--SMMCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQREEPA 323 (585)
T ss_pred HHHHHHH--HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCc
Confidence 2211111 1233456777777888999999999999999999999999999999999999999999999865421 111
Q ss_pred CCCCCCCCCccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEEC
Q 000720 580 TEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVH 658 (1333)
Q Consensus 580 ~~~~~~~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~ 658 (1333)
...+.......++++|++|+|+++ ++.+++ |+++++||+++|+||||||||||+++|+|+++|++|++ .++
T Consensus 324 ~~~~~~~~~~~i~~~~v~~~y~~~-------~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i-~~~ 395 (585)
T TIGR01192 324 DAPELPNVKGAVEFRHITFEFANS-------SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQI-LID 395 (585)
T ss_pred cCCCCCCCCCeEEEEEEEEECCCC-------CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEE-EEC
Confidence 111111123469999999999753 357999 99999999999999999999999999999999999986 666
Q ss_pred C-------------eEEEEcCCCCCCCCCHHHHhccCCc-CCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChH
Q 000720 659 G-------------KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGG 724 (1333)
Q Consensus 659 g-------------~iayv~Q~~~i~~~Tv~enI~~g~~-~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGG 724 (1333)
| .++|+||+|+++++|++|||.++.+ .+++...++++.+++.+.+..+|+|.+|.+|++|.+||||
T Consensus 396 g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgG 475 (585)
T TIGR01192 396 GIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGG 475 (585)
T ss_pred CEEhhhCCHHHHHhheEEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHH
Confidence 5 4799999999999999999999864 4555666777777888888899999999999999999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhcCCEEEEEeCCeEEEccChH
Q 000720 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYE 804 (1333)
Q Consensus 725 QkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~aD~i~vl~~G~i~~~g~~~ 804 (1333)
||||++||||++++|++++||||||+||+++++.+.+. ++...+++|+|+|||+++.++.||+|++|++|++++.|+++
T Consensus 476 q~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~-l~~~~~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~g~~~ 554 (585)
T TIGR01192 476 ERQRLAIARAILKNAPILVLDEATSALDVETEARVKNA-IDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQ 554 (585)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHH-HHHHhCCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999998887654 45556789999999999999899999999999999999999
Q ss_pred HHHhhcchHHHHHHHh
Q 000720 805 DLIADQNSELVRQMKA 820 (1333)
Q Consensus 805 ~l~~~~~~~~~~~~~~ 820 (1333)
++.+ .++.+.++...
T Consensus 555 ~l~~-~~~~y~~l~~~ 569 (585)
T TIGR01192 555 ELIQ-KDGRFYKLLRR 569 (585)
T ss_pred HHHH-CCChHHHHHHh
Confidence 9987 55566665543
No 29
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=3e-57 Score=565.34 Aligned_cols=506 Identities=21% Similarity=0.250 Sum_probs=380.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 274 WKSLALNAAFAGVNTIASYIGPFLITNFVSFLS-GKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSA 352 (1333)
Q Consensus 274 ~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~-~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~~~~rir~~ 352 (1333)
|+.++...++.++..++..+.|+++..+++.+. +... ... -+.+++.+++..++..++.....+...+++.++...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (529)
T TIGR02857 2 RRALALLGLLGALGALLIIAQAWLLARVIDGLISAGEP--LAE-LLPALGALALAVLLRALLGWLGERAAARAAAAVKSQ 78 (529)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC--hHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556777888888999999999999999999773 3221 111 222333333444445555555556667778888888
Q ss_pred HHHHHHHHHhccccC---CCChHHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 000720 353 LTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFV 428 (1333)
Q Consensus 353 l~~~iy~K~L~ls~~---~~~~G~i~nlms~D~~~i~~~~~-~~~~~w~~plqi~~~l~lL~~~lG~~a~l~gl~~~~~~ 428 (1333)
+...+|+|.++++.. ..++|+++|.+++|++++.++.. .+..+....+.+++++++++. +.|+.+++.++.+++.
T Consensus 79 lr~~l~~~l~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~l~~~~l~~~~l~ 157 (529)
T TIGR02857 79 LRERLLAAVAALGPGWLQGRPSGELATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFP-ADWISGLILLLTAPLI 157 (529)
T ss_pred HHHHHHHHHHhCCchhhccCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHH
Confidence 888899998887543 33899999999999999998754 355555555555544444332 2212223333322222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 429 MVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIAFLFWAS 508 (1333)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~D~R~~~~~E~L~~Ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~a~~~~~~~~~ 508 (1333)
..+...+.++.++..++.++..+++.+.+.|.++|+++||.|++|+.+.++.++.-++-.+...+.....+....+....
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (529)
T TIGR02857 158 PIFMILIGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLELF 237 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23334566777777888888999999999999999999999999998888876543322222111111112111111111
Q ss_pred HHHH--HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCC
Q 000720 509 PTLV--SVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPITEPTSKA 586 (1333)
Q Consensus 509 p~lv--~~~tF~~~~~~~~~Lt~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~~~~~~~~ 586 (1333)
..+. .++.++.+.+..+.+|.+.+++++.+...+..|+..+...+..+.+++++++||.++++.+++.......+ ..
T Consensus 238 ~~~~~~~~~~~~~~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~~~~~~-~~ 316 (529)
T TIGR02857 238 ATLSVALVAVYIGFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAGKAPVT-AA 316 (529)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcCCC-CC
Confidence 1111 11234444455778999999999999999999999999999999999999999999998543211111111 11
Q ss_pred CCccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC------
Q 000720 587 SDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG------ 659 (1333)
Q Consensus 587 ~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g------ 659 (1333)
....|+++|++|+|+++ +++.++| |+++++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 317 ~~~~i~~~~v~f~y~~~------~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I-~~~g~~i~~~ 389 (529)
T TIGR02857 317 PAPSLEFSGLSVAYPGR------RAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSI-AVNGVPLADA 389 (529)
T ss_pred CCCeEEEEEEEEECCCC------CcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEE-EECCEehhhC
Confidence 22469999999999854 3478999 99999999999999999999999999999999999986 7765
Q ss_pred -------eEEEEcCCCCCCCCCHHHHhccCCc-CCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHH
Q 000720 660 -------KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQL 731 (1333)
Q Consensus 660 -------~iayv~Q~~~i~~~Tv~enI~~g~~-~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~L 731 (1333)
+++||+|+|+++++|++|||.++.+ .+++...++++.+++.++++.+|+|.+|.+|++|.+||||||||++|
T Consensus 390 ~~~~lr~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~l 469 (529)
T TIGR02857 390 DADSWRDQIAWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLAL 469 (529)
T ss_pred CHHHHHhheEEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHH
Confidence 3799999999999999999999864 56677888999999999999999999999999999999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhcCCEEEEE
Q 000720 732 ARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVM 792 (1333)
Q Consensus 732 ARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~aD~i~vl 792 (1333)
|||++++|++++||||||+||+++.+.+.+.+ ....+++|+|+|||+++.++.||+|++|
T Consensus 470 aRal~~~~~ililDE~ts~lD~~~~~~i~~~l-~~~~~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 470 ARAFLRDAPLLLLDEPTAHLDAETEALVTEAL-RALAQGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred HHHHhcCCCEEEEeCcccccCHHHHHHHHHHH-HHhcCCCEEEEEecCHHHHHhCCEEEeC
Confidence 99999999999999999999999999887654 4556789999999999999999999986
No 30
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=8.5e-57 Score=565.19 Aligned_cols=530 Identities=26% Similarity=0.363 Sum_probs=402.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 273 VWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSA 352 (1333)
Q Consensus 273 ~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~~~~rir~~ 352 (1333)
++ .+....++.++..++....|.++..+++.+.. .. . . ...+...+++..++..++.....+...+++.++...
T Consensus 13 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~--~-~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 86 (567)
T COG1132 13 YK-LLLLAILLLLLSALLSLLLPLLIGRIIDALLA-DL--G-E-LLELLLLLLLLALLGGVLRALQSYLGSRLGQKIVAD 86 (567)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hH--H-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66 78888888888899999999999999987651 11 1 1 111122222222233333344445555666788888
Q ss_pred HHHHHHHHHhccccC--CC-ChHHHHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 000720 353 LTVLIYKRSMAIKFA--GP-SSGIIINMINVDVERIGDFFLYI-HRIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFV 428 (1333)
Q Consensus 353 l~~~iy~K~L~ls~~--~~-~~G~i~nlms~D~~~i~~~~~~~-~~~w~~plqi~~~l~lL~~~lG~~a~l~gl~~~~~~ 428 (1333)
+...+|+|.++++.. .+ .+|++++.+++|++.+....... +.+-..++-++..+++++ .+.|..++..++..+++
T Consensus 87 lr~~~~~~l~~~~~~~~~~~~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~l~~~~~~~~~ 165 (567)
T COG1132 87 LRRDLFEKLLRLPLSFFDKAKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLF-SLSWRLALILLLILPLL 165 (567)
T ss_pred HHHHHHHHHHhCCHHHhCcCCcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHH
Confidence 889999999988732 22 77999999999999999887654 222223333333333333 33323344444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Q 000720 429 MVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIAFLF-WA 507 (1333)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~D~R~~~~~E~L~~Ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~a~~~~~~-~~ 507 (1333)
......+.++.++...+..+..++..+.+.|.++|+++||.|+.|+...++.++..+...+...+.....+....+. ..
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (567)
T COG1132 166 ALVLSLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLLL 245 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566566788888888889999999999999999999999997766665544333332222122222221111 11
Q ss_pred -HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC-CCCCCCCCCC
Q 000720 508 -SPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQ-KKPITEPTSK 585 (1333)
Q Consensus 508 -~p~lv~~~tF~~~~~~~~~Lt~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~-~~~~~~~~~~ 585 (1333)
.-..+.++.++.+.+..+.++.+.+.+.+.++..+..|+..+...+..+.++..|.+|+.++++.++. .+.... ..
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~--~~ 323 (567)
T COG1132 246 SSLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVEDPPDP--LK 323 (567)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCC--CC
Confidence 11223334456666667779999999999999999999999999999999999999999999998652 211111 12
Q ss_pred CCCccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC-----
Q 000720 586 ASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG----- 659 (1333)
Q Consensus 586 ~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g----- 659 (1333)
..+..|+++|++|+|+++ +++++| ||++++||.+||+||+|||||||+++|+|+++|++|++ .++|
T Consensus 324 ~~~~~I~f~~vsf~y~~~-------~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I-~idg~dI~~ 395 (567)
T COG1132 324 DTIGSIEFENVSFSYPGK-------KPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEI-LIDGIDIRD 395 (567)
T ss_pred CCCCeEEEEEEEEEcCCC-------CccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeE-EECCEehhh
Confidence 234569999999999853 589999 99999999999999999999999999999999999997 7776
Q ss_pred --------eEEEEcCCCCCCCCCHHHHhccCCc-CCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHH
Q 000720 660 --------KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQ 730 (1333)
Q Consensus 660 --------~iayv~Q~~~i~~~Tv~enI~~g~~-~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~ 730 (1333)
+++||||+|++|++||+|||.+|++ ..++...++++.+++.+.++.+|+|.+|.+|++|.+||||||||++
T Consensus 396 i~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrla 475 (567)
T COG1132 396 ISLDSLRKRIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLA 475 (567)
T ss_pred cCHHHHHHhccEEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHH
Confidence 4799999999999999999999987 4666777788878888889999999999999999999999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhcCCEEEEEeCCeEEEccChHHHHhhc
Q 000720 731 LARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQ 810 (1333)
Q Consensus 731 LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~aD~i~vl~~G~i~~~g~~~~l~~~~ 810 (1333)
||||++++|+|++||||||+||+++.+.+.+.+ ....++||+|+|+|+++.+..||+|+||++|+|++.|+++|+++ .
T Consensus 476 iARall~~~~ILILDEaTSalD~~tE~~I~~~l-~~l~~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~h~eLl~-~ 553 (567)
T COG1132 476 IARALLRNPPILILDEATSALDTETEALIQDAL-KKLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHEELLA-K 553 (567)
T ss_pred HHHHHhcCCCEEEEeccccccCHHhHHHHHHHH-HHHhcCCEEEEEeccHhHHHhCCEEEEEECCEEEEecCHHHHHH-c
Confidence 999999999999999999999999988877654 45557899999999999999999999999999999999999998 4
Q ss_pred chHHHHHHHhh
Q 000720 811 NSELVRQMKAH 821 (1333)
Q Consensus 811 ~~~~~~~~~~~ 821 (1333)
++.+.++...+
T Consensus 554 ~g~y~~l~~~~ 564 (567)
T COG1132 554 GGLYARLYQAQ 564 (567)
T ss_pred CCHHHHHHHHh
Confidence 66777766543
No 31
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.1e-58 Score=549.13 Aligned_cols=428 Identities=21% Similarity=0.289 Sum_probs=369.2
Q ss_pred HHHHHHHHHHhhHHHHHHhcc-----cccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 000720 899 CQVLFQALQMGSNYWIAWATD-----EKRKVSREQLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRA 973 (1333)
Q Consensus 899 ~~~l~~~~~~~~~~wl~~~~~-----~~~~~~~~~~l~vy~~l~~~~~i~~~~~~~~~~~~~~~~s~~L~~~ll~~il~a 973 (1333)
+.++.....+..++.+...+| ++..........+..++.++++++.++|.+++.+.+.+...++|.++|++++|+
T Consensus 155 ~l~vss~~~~~iP~~~G~~id~~~~~~~~~~~~~~~~~~l~~l~~~~a~~~~~r~~~~~~a~~rv~~rlR~~lF~sil~Q 234 (716)
T KOG0058|consen 155 LLLVSSLINMFIPYYLGKLIDTISEGDDSADALKRACTILLGLFLIGALANAIRGGLLQYAGERVVARLRTDLFRSLLRQ 234 (716)
T ss_pred HHHHHHhhcchhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444556666665543332 111122334456677778889999999999999999999999999999999999
Q ss_pred ccccccccCcchhHHHHhccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 974 PISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQAYYITTARE 1053 (1333)
Q Consensus 974 p~~fFd~tp~GrIlnRfs~Di~~vd~~l~~~l~~~~~~~~~~l~~ivv~~~~~~~l~lv~ipl~~~~~~~~~~y~~~sre 1053 (1333)
.++|||.+.+|+|++|+++|.+.+.+.++..+...+.+.++.++.+++|++.+|++.++.+..+|+...+.++|.+..|+
T Consensus 235 diaFFD~nktGeL~SRLtsD~~~vs~svs~nls~~lR~~~~~~g~~~~M~~~S~~Ltlv~~i~~P~v~~~~~~yG~~~rk 314 (716)
T KOG0058|consen 235 DIAFFDENKTGELISRLTSDTQIVSNSVSQNLSDGLRNLVQGFGGLGFMFSLSWRLTLVTLIVVPIVALVAKIYGKYLRK 314 (716)
T ss_pred hhhhhccCCccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhcHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhHhhchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 000720 1054 LARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLIIL- 1132 (1333)
Q Consensus 1054 l~rl~~~~~spl~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~ll~~~~~~~~~~~~- 1132 (1333)
+.+..+++.+...+...|.+++++|||+|+.|++..++|.+.+++..+...+...+...+....++.+......++..+
T Consensus 315 lS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~~k~a~a~~~f~~~~~~~~~~~~~siL~~Gg 394 (716)
T KOG0058|consen 315 LSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSKKEAVAYGIFFGSTNLLGNLAVLSILFYGG 394 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHhHhHHHHHHhHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999988877766666665555566666666555555443
Q ss_pred HhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCcccCCCCCCCCCCCcccEEEEE
Q 000720 1133 VTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELEN 1212 (1333)
Q Consensus 1133 ~~~~~~~~~~g~~gl~l~y~l~l~~~l~~~v~~~~~le~~~~SveRI~~~~~~p~E~~~~~~~~~~~~~wp~~G~I~f~n 1212 (1333)
.+...+.+++|..--++.|...+...+..+-..++++-+.+.|.||++||+|.+|.-+.. + ...|. ..+|.|+|+|
T Consensus 395 ~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr~P~i~~~--G-~~~p~-~~~G~IeF~~ 470 (716)
T KOG0058|consen 395 HLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMDRKPRIPLT--G-TLAPD-HLQGVIEFED 470 (716)
T ss_pred chhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccCCCCCCC--C-ccccc-cccceEEEEE
Confidence 334567789999999999999999999999999999999999999999999977654432 1 11222 4689999999
Q ss_pred EEEEEC--CCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCCCChHHHhhcCeEecc
Q 000720 1213 LLVQYN--PTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQ 1290 (1333)
Q Consensus 1213 Vsf~Y~--~~~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~i~l~~LRs~isiVpQ 1290 (1333)
|+|+|+ |+. +||||+||+|+|||+||+||||||||||++++|.|||||++|+|++||+||++++.+.||++||+|.|
T Consensus 471 VsFaYP~Rp~~-~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~Q 549 (716)
T KOG0058|consen 471 VSFAYPTRPDV-PVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIGLVGQ 549 (716)
T ss_pred eeeecCCCCCc-hhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHeeeeec
Confidence 999995 444 49999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccchhhhcCCC-CCCCHHHHHHHHHhCCCCcccccCC
Q 000720 1291 DPMLFQGTVRTNLDPL-EQHSDQEIWEVKISKLLTHKSYQCE 1331 (1333)
Q Consensus 1291 dp~LF~GTIR~NLdp~-~~~sDeeI~~aL~~~~L~~~~~~~~ 1331 (1333)
||+||+|||||||.++ .+.|||||.+|.++++-.+.+...|
T Consensus 550 EPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p 591 (716)
T KOG0058|consen 550 EPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFP 591 (716)
T ss_pred cceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCc
Confidence 9999999999999876 4689999999999999887766554
No 32
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.7e-56 Score=521.65 Aligned_cols=523 Identities=22% Similarity=0.288 Sum_probs=399.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 279 LNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSALTVLIY 358 (1333)
Q Consensus 279 ~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~~~~rir~~l~~~iy 358 (1333)
...++..+..++...+-+++-..++-+-..+.. .. -+.++++++++.++.++..-.-....+|.+.++|..+...++
T Consensus 4 i~~ll~~l~~i~~i~qa~llA~~l~~l~~~~~~--~~-l~~~~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l 80 (559)
T COG4988 4 ISALLAVLSGIAIIAQAALLADILTKLIEGQLF--QS-LLPLLILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVL 80 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccH--HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666777766665533222211 11 233444455555555555444445567889999999999999
Q ss_pred HHHhccccCC---CChHHHHHHHHhhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 000720 359 KRSMAIKFAG---PSSGIIINMINVDVERIGDFF----LYIHRIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFVMVS 431 (1333)
Q Consensus 359 ~K~L~ls~~~---~~~G~i~nlms~D~~~i~~~~----~~~~~~w~~plqi~~~l~lL~~~lG~~a~l~gl~~~~~~~~~ 431 (1333)
+|..+++... .++|++.+++..-++.+..++ +.+...-..|+-+.++++...+.-| ...+..+..+.+.
T Consensus 81 ~~l~~~gp~~~~~~~~g~~atl~~egve~l~~Y~~ryLPq~~~~~ivp~~i~i~v~~~~w~aa-lIllit~PlIPlf--- 156 (559)
T COG4988 81 DKLAKLGPAFIAQKPAGSAATLALEGIEQLEPYYARYLPQMFLSAIVPLLILIAIFFFNWAAA-LILLITAPLIPLF--- 156 (559)
T ss_pred HHHHhCChhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHH---
Confidence 9999887532 288999999999999887754 3444555678888888877776555 4333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 432 NTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKL----LRLREIERDSLKKYLYTCSAIAFLFWA 507 (1333)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~D~R~~~~~E~L~~Ir~IK~~~wE~~f~~~i----~~~R~~E~~~l~~~~~~~a~~~~~~~~ 507 (1333)
.+.+++..++..++.++.-..=-...-+-|+|+-++|.|+-.+...++| ++.|+.-|+.+|-.....++.-++...
T Consensus 157 Milvg~~a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~~~~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~l 236 (559)
T COG4988 157 MILVGLAAKDASEKQFSALARLSGHFLDRLRGLETLRAFGRTEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYL 236 (559)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555566666666665555667778999999999999876555555 568999999888766665555444333
Q ss_pred HHHHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC-CCCCC-CCC
Q 000720 508 SPTLVSVITFGVCILLK-TPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQK-KPITE-PTS 584 (1333)
Q Consensus 508 ~p~lv~~~tF~~~~~~~-~~Lt~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~-~~~~~-~~~ 584 (1333)
+-.+ ++.+...-+.+ ++++-...|.+|-+---.-.|++.+...+..-.++..+.+.+..|++.|++. +..+. ...
T Consensus 237 siAl--vAv~~g~~ll~~G~ltl~~~l~~LiLAPEff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~~~~~~ 314 (559)
T COG4988 237 SIAL--VAVYIGFRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGEKAEVA 314 (559)
T ss_pred HHHH--HHHHHHHHHHccCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCccccccc
Confidence 2222 22333444556 6899999999888877788999999999999999999999999999988732 22111 112
Q ss_pred CCCCccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC----
Q 000720 585 KASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---- 659 (1333)
Q Consensus 585 ~~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g---- 659 (1333)
......+..+|.+|.|++. ++.+++ |+++++|++++|+|+||||||||+++|+|+.+|++|++ .++|
T Consensus 315 ~~~~~ei~~~~l~~~y~~g-------~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I-~vng~~l~ 386 (559)
T COG4988 315 NEPPIEISLENLSFRYPDG-------KPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEI-RVNGIDLR 386 (559)
T ss_pred cCCCceeeecceEEecCCC-------CcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceE-EECCcccc
Confidence 2223345566999999865 388999 99999999999999999999999999999999999996 7775
Q ss_pred ---------eEEEEcCCCCCCCCCHHHHhccCCc-CCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHH
Q 000720 660 ---------KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRI 729 (1333)
Q Consensus 660 ---------~iayv~Q~~~i~~~Tv~enI~~g~~-~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv 729 (1333)
+++||+|+|.++.+|+||||.++++ -.++...++++..++.+.++. |+|.+|.+||+|.+|||||+||+
T Consensus 387 ~l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~-p~GLdt~ige~G~~LSgGQ~QRl 465 (559)
T COG4988 387 DLSPEAWRKQISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGAGLSGGQAQRL 465 (559)
T ss_pred ccCHHHHHhHeeeeCCCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcC-CCcccchhccCCCCCCHHHHHHH
Confidence 4899999999999999999999987 456778889999999888888 99999999999999999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhcCCEEEEEeCCeEEEccChHHHHhh
Q 000720 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIAD 809 (1333)
Q Consensus 730 ~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~aD~i~vl~~G~i~~~g~~~~l~~~ 809 (1333)
+||||+++++++|||||||++||+++++.+. +.+..+.+++|+|++||+++.+..+|+|++|++|++++.|+++++.+
T Consensus 466 aLARAll~~~~l~llDEpTA~LD~etE~~i~-~~l~~l~~~ktvl~itHrl~~~~~~D~I~vld~G~l~~~g~~~~L~~- 543 (559)
T COG4988 466 ALARALLSPASLLLLDEPTAHLDAETEQIIL-QALQELAKQKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSE- 543 (559)
T ss_pred HHHHHhcCCCCEEEecCCccCCCHhHHHHHH-HHHHHHHhCCeEEEEEcChHHHhcCCEEEEecCCceeccCCHHHHhh-
Confidence 9999999999999999999999999976665 45667778899999999999999999999999999999999999987
Q ss_pred cchHHHHHHHhh
Q 000720 810 QNSELVRQMKAH 821 (1333)
Q Consensus 810 ~~~~~~~~~~~~ 821 (1333)
+++-+.+++.++
T Consensus 544 ~~~~y~~l~~~q 555 (559)
T COG4988 544 KQGLYANLLKQQ 555 (559)
T ss_pred cCcHHHHHHHHH
Confidence 556666666543
No 33
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=6.8e-56 Score=596.94 Aligned_cols=536 Identities=18% Similarity=0.189 Sum_probs=380.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 271 HAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRVR 350 (1333)
Q Consensus 271 ~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~~~~rir 350 (1333)
+.+++.++++.++.++..++..+.|+++..+++-+-+.... ... +..+++.+++..++..++.....|...+++.++-
T Consensus 821 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~-~~~~~l~~~~~~i~~~~~~~l~~~~~~~~~~~~~ 898 (1466)
T PTZ00265 821 FSYKKDVTIIALSILVAGGLYPVFALLYAKYVSTLFDFANL-EAN-SNKYSLYILVIAIAMFISETLKNYYNNVIGEKVE 898 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH-HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555677888888888888889999999998744222110 111 2222333333333333333333344556666666
Q ss_pred HHHHHHHHHHHhccccC-----CCChHHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 000720 351 SALTVLIYKRSMAIKFA-----GPSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGAAPAFAALFS 424 (1333)
Q Consensus 351 ~~l~~~iy~K~L~ls~~-----~~~~G~i~nlms~D~~~i~~~~~-~~~~~w~~plqi~~~l~lL~~~lG~~a~l~gl~~ 424 (1333)
..+...+|+|.++.+.. ..++|++++.++.|++.+.++.. .+..+...++.+++++++++ .+.|..+++.
T Consensus 899 ~~lR~~lf~~ll~~~~~~fd~~~~~~G~l~srl~~Dv~~l~~~~~~~l~~~~~~i~~~i~~~~~~~-~~~~~l~l~~--- 974 (1466)
T PTZ00265 899 KTMKRRLFENILYQEISFFDQDKHAPGLLSAHINRDVHLLKTGLVNNIVIFTHFIVLFLVSMVMSF-YFCPIVAAVL--- 974 (1466)
T ss_pred HHHHHHHHHHHHcCCHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH---
Confidence 66667777777776532 23799999999999999988643 23333334444444443333 2231222221
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHH-----------------HHHHHHHHHHHHHHHhhhHHHHHhchHHHHHHHHHHHHHH
Q 000720 425 TIFVMVSNTPLANRQERF-HSMI-----------------MEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREI 486 (1333)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~-~~~~-----------------~~~~D~R~~~~~E~L~~Ir~IK~~~wE~~f~~~i~~~R~~ 486 (1333)
+++...+...+.+..+.. .++. .+..++....++|.++|||+||.|+-|+.+.++.++.-+.
T Consensus 975 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~~~~~~ 1054 (1466)
T PTZ00265 975 TGTYFIFMRVFAIRARLTANKDVEKKEINQPGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGLEDYFCNLIEKAIDY 1054 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccchhhhHHHHHHHHHHHHHHHhcHHHHHHhcchHHHHHHHHHHHHH
Confidence 122222222223222211 1111 1112334678999999999999999999999888775443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 487 ERDSLKKYLYTCSAIAFLFWASPT--LVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLY 564 (1333)
Q Consensus 487 E~~~l~~~~~~~a~~~~~~~~~p~--lv~~~tF~~~~~~~~~Lt~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~ 564 (1333)
..+..++.....+....+..+... .+.++++|++.+..+.++.+.++.++..+.....++..+...++.+.++++|.+
T Consensus 1055 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~lv~~g~it~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~a~~a~~ 1134 (1466)
T PTZ00265 1055 SNKGQKRKTLVNSMLWGFSQSAQLFINSFAYWFGSFLIRRGTILVDDFMKSLFTFLFTGSYAGKLMSLKGDSENAKLSFE 1134 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333332222222222222222 234457788888888999999998887766666778888899999999999999
Q ss_pred HHHHHhcccCCCC--CCCCCC---CCCCCccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhH
Q 000720 565 RIQEFIKEDNQKK--PITEPT---SKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSS 638 (1333)
Q Consensus 565 RI~~fL~~~e~~~--~~~~~~---~~~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKST 638 (1333)
||.++++.+++.+ .....+ ....++.|+++|++|+|+++ ++.++|++ ||+|++|+.+||+||+||||||
T Consensus 1135 ri~~ll~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~-----~~~~vL~~lsl~i~~G~~vAIVG~SGsGKST 1209 (1466)
T PTZ00265 1135 KYYPLIIRKSNIDVRDNGGIRIKNKNDIKGKIEIMDVNFRYISR-----PNVPIYKDLTFSCDSKKTTAIVGETGSGKST 1209 (1466)
T ss_pred HHHHHHCCCCcCCCCCCcccccccCCCCCceEEEEEEEEECCCC-----CCCccccCeeEEEcCCCEEEEECCCCCCHHH
Confidence 9999998754111 101110 11223579999999999865 44579999 9999999999999999999999
Q ss_pred HHHHHhCCCcC------------------------------------------------------CCCcEEEECC-----
Q 000720 639 LLSSILGEIPR------------------------------------------------------ISGAAIKVHG----- 659 (1333)
Q Consensus 639 Ll~~ilG~~~~------------------------------------------------------~~G~~i~~~g----- 659 (1333)
|+++|+|+++| .+|++ .++|
T Consensus 1210 l~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I-~idG~di~~ 1288 (1466)
T PTZ00265 1210 VMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKI-LLDGVDICD 1288 (1466)
T ss_pred HHHHHHHhCCCccccccccccccccccccccccccccccccccccccccccccccccccccccCCCCCeE-EECCEEHHh
Confidence 99999999998 58886 7776
Q ss_pred --------eEEEEcCCCCCCCCCHHHHhccCCc-CCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHH
Q 000720 660 --------KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQ 730 (1333)
Q Consensus 660 --------~iayv~Q~~~i~~~Tv~enI~~g~~-~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~ 730 (1333)
++|||+|+|.+|++||||||.+|.+ ..++..+++++.+++.+.+..+|+|.+|.+|++|.+|||||||||+
T Consensus 1289 ~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIa 1368 (1466)
T PTZ00265 1289 YNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIA 1368 (1466)
T ss_pred CCHHHHHhhccEeCCCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHH
Confidence 4799999999999999999999965 5666778888888899999999999999999999999999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH--hCCCeEEEecCchhhhhcCCEEEEEeC----CeEE-EccCh
Q 000720 731 LARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL--LSQKTVLYTTHQLEFLDAADLVLVMKD----GKIE-QSGKY 803 (1333)
Q Consensus 731 LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~--~~~~TvIlvtH~~~~l~~aD~i~vl~~----G~i~-~~g~~ 803 (1333)
|||||+++|+|||||||||+||+++++.+.+. +... .+++|+|+|||+++.++.||+|++|++ |+++ +.|++
T Consensus 1369 IARALlr~p~ILLLDEaTSaLD~~sE~~I~~~-L~~~~~~~~~TvIiIaHRlsti~~aD~Ivvl~~~~~~G~iv~e~Gth 1447 (1466)
T PTZ00265 1369 IARALLREPKILLLDEATSSLDSNSEKLIEKT-IVDIKDKADKTIITIAHRIASIKRSDKIVVFNNPDRTGSFVQAHGTH 1447 (1466)
T ss_pred HHHHHhcCCCEEEEeCcccccCHHHHHHHHHH-HHHHhccCCCEEEEEechHHHHHhCCEEEEEeCCCCCCCEEEEecCH
Confidence 99999999999999999999999998877654 4444 368999999999999999999999999 9955 89999
Q ss_pred HHHHhhcchHHHHHHH
Q 000720 804 EDLIADQNSELVRQMK 819 (1333)
Q Consensus 804 ~~l~~~~~~~~~~~~~ 819 (1333)
+|+++..++.+.++..
T Consensus 1448 ~eLl~~~~g~Y~~l~~ 1463 (1466)
T PTZ00265 1448 EELLSVQDGVYKKYVK 1463 (1466)
T ss_pred HHHHhcCCChHHHHHh
Confidence 9999733556666554
No 34
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=1.3e-54 Score=591.11 Aligned_cols=464 Identities=17% Similarity=0.191 Sum_probs=351.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccc---CCCChHHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 000720 342 ANRIGIRVRSALTVLIYKRSMAIKF---AGPSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGAAP 417 (1333)
Q Consensus 342 ~~~~~~rir~~l~~~iy~K~L~ls~---~~~~~G~i~nlms~D~~~i~~~~~-~~~~~w~~plqi~~~l~lL~~~lG~~a 417 (1333)
..+.+.++| ..+|++.++.+. ...++|+|+|.++.|++.+.+.+. .+..+...++.++.++++++..-. +.
T Consensus 1033 ~~~~~~~l~----~~l~~~ll~~p~~ff~~~~~G~ilnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~li~~~~~~~-~~ 1107 (1522)
T TIGR00957 1033 GIQASRVLH----QDLLHNKLRSPMSFFERTPSGNLVNRFSKELDTVDSMIPPVIKMFMGSLFNVIGALIVILLATP-IA 1107 (1522)
T ss_pred HHHHHHHHH----HHHHHHHHcCChhHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 344555555 555556555443 233899999999999999998754 455556666666666655543222 33
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 418 AFAALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYT 497 (1333)
Q Consensus 418 ~l~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~R~~~~~E~L~~Ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~ 497 (1333)
+++.++++++...++.+..+..+..++...+.+....+..+|.++|+++||.|+||+.|.++..+.-+...+........
T Consensus 1108 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~ 1187 (1522)
T TIGR00957 1108 AVIIPPLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQKAYYPSIVA 1187 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333334444444445555555566677789999999999999999999999888776655444332221111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC
Q 000720 498 CSAIAFLFWASPTLVSVITFGVCIL-LKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQK 576 (1333)
Q Consensus 498 ~a~~~~~~~~~p~lv~~~tF~~~~~-~~~~Lt~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~ 576 (1333)
.............++ ++..+.+.+ ..+.++++.+..++.+...+..|+..+......+.++.+|.+||.+|++.+++.
T Consensus 1188 ~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~g~l~~~l~~~~~~~~~l~~l~~~~~~~e~~~~s~eRi~~~~~~~~e~ 1266 (1522)
T TIGR00957 1188 NRWLAVRLECVGNCI-VLFAALFAVISRHSLSAGLVGLSVSYSLQVTFYLNWLVRMSSEMETNIVAVERLKEYSETEKEA 1266 (1522)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 111111111111111 111222233 346799999999999999999999999999999999999999999999765422
Q ss_pred C---CCCCCC-CCCCCccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCC
Q 000720 577 K---PITEPT-SKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRIS 651 (1333)
Q Consensus 577 ~---~~~~~~-~~~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~ 651 (1333)
+ .....+ ..+.++.|+++|++|+|+++ .+++|+| ||+|++||++||||++|||||||+++|+|+++|++
T Consensus 1267 ~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~------~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~ 1340 (1522)
T TIGR00957 1267 PWQIQETAPPSGWPPRGRVEFRNYCLRYRED------LDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAE 1340 (1522)
T ss_pred cccccCCCCCCCCCCCCcEEEEEEEEEeCCC------CcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCC
Confidence 1 111111 11345689999999999864 2479999 99999999999999999999999999999999999
Q ss_pred CcEEEECC-------------eEEEEcCCCCCCCCCHHHHhccCCcCCHHHHHHHHHHcccchHHHhhcCCCccccCCCC
Q 000720 652 GAAIKVHG-------------KKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERG 718 (1333)
Q Consensus 652 G~~i~~~g-------------~iayv~Q~~~i~~~Tv~enI~~g~~~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g 718 (1333)
|++ .++| +++||||+|.+|++||||||....+.+++...++++.|++.+.+..+|+|.+|.+|++|
T Consensus 1341 G~I-~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G 1419 (1522)
T TIGR00957 1341 GEI-IIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGG 1419 (1522)
T ss_pred CeE-EECCEEccccCHHHHHhcCeEECCCCcccCccHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCC
Confidence 996 7776 47999999999999999999843367777788899999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhcCCEEEEEeCCeEE
Q 000720 719 INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIE 798 (1333)
Q Consensus 719 ~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~aD~i~vl~~G~i~ 798 (1333)
.+||||||||++||||++++|+|+|||||||+||+++.+.+ ++.++...+++|+|+|+|+++.+..||+|+||++|+|+
T Consensus 1420 ~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~I-q~~l~~~~~~~TvI~IAHRl~ti~~~DrIlVld~G~Iv 1498 (1522)
T TIGR00957 1420 ENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLI-QSTIRTQFEDCTVLTIAHRLNTIMDYTRVIVLDKGEVA 1498 (1522)
T ss_pred CcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHH-HHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999997655 45666667899999999999999999999999999999
Q ss_pred EccChHHHHhhcchHHHHHHHh
Q 000720 799 QSGKYEDLIADQNSELVRQMKA 820 (1333)
Q Consensus 799 ~~g~~~~l~~~~~~~~~~~~~~ 820 (1333)
+.|++++++++ ++.|.++..+
T Consensus 1499 E~G~~~eLl~~-~~~f~~l~~~ 1519 (1522)
T TIGR00957 1499 EFGAPSNLLQQ-RGIFYSMAKD 1519 (1522)
T ss_pred EECCHHHHHhC-CCHHHHHHHH
Confidence 99999999984 5667666543
No 35
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=4.8e-54 Score=584.32 Aligned_cols=466 Identities=17% Similarity=0.185 Sum_probs=335.3
Q ss_pred HHHHHHHHHHHHHHHHHhcccc---CCCChHHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 000720 345 IGIRVRSALTVLIYKRSMAIKF---AGPSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGAAPAFA 420 (1333)
Q Consensus 345 ~~~rir~~l~~~iy~K~L~ls~---~~~~~G~i~nlms~D~~~i~~~~~-~~~~~w~~plqi~~~l~lL~~~lG~~a~l~ 420 (1333)
.+.+.-..+-..+|++.++.+. ..+++|+|+|.++.|++.+.+... .+..+....++++.++.++..... +..++
T Consensus 980 ~~~~~~~~L~~~l~~~ll~~p~~ffd~~~~G~IlnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~i~~~~~-~~~~~ 1058 (1622)
T PLN03130 980 SSLYAAKRLHDAMLGSILRAPMSFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFLGQIFQLLSTFVLIGIVST-ISLWA 1058 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 3444444444556666665543 234899999999999999988654 445555555555555444332111 22222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 421 ALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSA 500 (1333)
Q Consensus 421 gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~R~~~~~E~L~~Ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~a~ 500 (1333)
.++++++++.+..+..+..+..++..+..+....+..+|.++|+++||.|++|+.|.++..+..+...+...........
T Consensus 1059 ~~pl~~~~~~~~~~~~~~~r~~~r~~~~~~s~~~~~~~Etl~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~~w 1138 (1622)
T PLN03130 1059 IMPLLVLFYGAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMAEINGRSMDNNIRFTLVNMSSNRW 1138 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhCCHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222333333334444444444555666778899999999999999999999887666544443321111111001
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHh-cCCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 000720 501 IAFLFWASPTLVSVITFG-VCILL-KTPLT-----SGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKED 573 (1333)
Q Consensus 501 ~~~~~~~~p~lv~~~tF~-~~~~~-~~~Lt-----~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~ 573 (1333)
..........++ +.++ .+.+. ++..+ ++.+-.+++....+..++..+......+.++.+|.+|+.+|++.|
T Consensus 1139 l~~~l~~~~~~~--i~~~~~~~v~~~~~~~~~~~~~~~~G~~ls~~~~~~~~l~~l~~~~~~~e~~~~sveRi~e~~~~~ 1216 (1622)
T PLN03130 1139 LAIRLETLGGLM--IWLTASFAVMQNGRAENQAAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGTYIDLP 1216 (1622)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 100000111111 1111 12222 32221 333334445555666777777778888899999999999999876
Q ss_pred CCCCC-CC--C-CCCCCCCccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCc
Q 000720 574 NQKKP-IT--E-PTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP 648 (1333)
Q Consensus 574 e~~~~-~~--~-~~~~~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~ 648 (1333)
++.+. .+ . .+..+.++.|+++|++|+|+++ .+++|+| ||+|++||++||||++|||||||+++|+|+++
T Consensus 1217 ~E~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~------~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~ 1290 (1622)
T PLN03130 1217 SEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPE------LPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVE 1290 (1622)
T ss_pred CcccccccCCCCCCCCCCCCcEEEEEEEEEeCCC------CCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCC
Confidence 53211 11 1 1111234679999999999753 3479999 99999999999999999999999999999999
Q ss_pred CCCCcEEEECC-------------eEEEEcCCCCCCCCCHHHHhccCCcCCHHHHHHHHHHcccchHHHhhcCCCccccC
Q 000720 649 RISGAAIKVHG-------------KKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVG 715 (1333)
Q Consensus 649 ~~~G~~i~~~g-------------~iayv~Q~~~i~~~Tv~enI~~g~~~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig 715 (1333)
|++|++ .++| +++||||+|.+|++||||||..+.+.+++...++++.|++.+.++.+|+|.+|.+|
T Consensus 1291 p~~G~I-~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vg 1369 (1622)
T PLN03130 1291 LERGRI-LIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVS 1369 (1622)
T ss_pred CCCceE-EECCEecccCCHHHHHhccEEECCCCccccccHHHHhCcCCCCCHHHHHHHHHHcCcHHHHHhCccccCcccc
Confidence 999996 7776 47999999999999999999998888888888999999999999999999999999
Q ss_pred CCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhcCCEEEEEeCC
Q 000720 716 ERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDG 795 (1333)
Q Consensus 716 ~~g~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~aD~i~vl~~G 795 (1333)
++|.+||||||||++||||++++|+|++||||||+||+++.+.+ ++.++...+++|+|+|+|+++.+..||+|+||++|
T Consensus 1370 e~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~I-q~~I~~~~~~~TvI~IAHRL~tI~~~DrIlVLd~G 1448 (1622)
T PLN03130 1370 EAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALI-QKTIREEFKSCTMLIIAHRLNTIIDCDRILVLDAG 1448 (1622)
T ss_pred CCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHH-HHHHHHHCCCCEEEEEeCChHHHHhCCEEEEEECC
Confidence 99999999999999999999999999999999999999997766 45566667899999999999999999999999999
Q ss_pred eEEEccChHHHHhhcchHHHHHHHhh
Q 000720 796 KIEQSGKYEDLIADQNSELVRQMKAH 821 (1333)
Q Consensus 796 ~i~~~g~~~~l~~~~~~~~~~~~~~~ 821 (1333)
+|++.|+|++++++.++.|.++....
T Consensus 1449 ~IvE~Gt~~eLl~~~~g~f~~L~~~~ 1474 (1622)
T PLN03130 1449 RVVEFDTPENLLSNEGSAFSKMVQST 1474 (1622)
T ss_pred EEEEeCCHHHHHhCCCCHHHHHHHHc
Confidence 99999999999985456677766543
No 36
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.7e-53 Score=491.49 Aligned_cols=515 Identities=22% Similarity=0.301 Sum_probs=386.6
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccC
Q 000720 289 IASYIGPFLITNFVSFLSGKHDHS-SYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSALTVLIYKRSMAIKFA 367 (1333)
Q Consensus 289 ~~~~~~P~ll~~li~~~~~~~~~~-~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~~~~rir~~l~~~iy~K~L~ls~~ 367 (1333)
.+....|++++..++-+++.+..+ ........+.+++++.+..+++.-.-.+....+..++-.....-+|+..+.++..
T Consensus 44 ~l~v~vp~~~~~~id~l~~~~~~~a~~~~~~~~~~~y~iar~~s~~F~el~~~vfa~v~q~~iR~~~~~vf~~~~~ld~~ 123 (591)
T KOG0057|consen 44 ILNVQVPFIFKLIIDGLNDADGNPAVLSTITALLAGYGIARLGSSVFNELRNFVFAKVAQRVIRDSSSDVFRHLMSLDLS 123 (591)
T ss_pred HhheehHHHHHHHHhhhhhcccCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 444457999999998886333221 0111223344445555555554444444445555555556666777777766543
Q ss_pred ---CCChHHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 368 ---GPSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFVMVSNTPLANRQERFH 443 (1333)
Q Consensus 368 ---~~~~G~i~nlms~D~~~i~~~~~-~~~~~w~~plqi~~~l~lL~~~lG~~a~l~gl~~~~~~~~~~~~~~~~~~~~~ 443 (1333)
++.+|++.+.|..-...|.+++. .+..+....+++.+....+|...|...++..++.+.....+.....++-.+++
T Consensus 124 ~~~~~~tG~l~~~idRgsraI~~vl~~~V~~i~p~~~~i~~v~~~l~~~~Ga~~~li~~~~v~~Y~a~Ti~~t~~Rn~fR 203 (591)
T KOG0057|consen 124 FFLSRGTGALNRIIDRGSRAISFVLSAMVFNIIPTLFEIALVSGILYYKFGAAFALITLGTVGAYAAFTIVVTRWRNRFR 203 (591)
T ss_pred hhcCCCcchHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhheeEEeehhHHHHHH
Confidence 34899999999998888888764 34556666778888888999999933333333334444445556678888999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHhchHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 000720 444 SMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLR-LREIERDSLKKYLYTCSAIAFLFWASPTLVSVITFGVCI- 521 (1333)
Q Consensus 444 ~~~~~~~D~R~~~~~E~L~~Ir~IK~~~wE~~f~~~i~~-~R~~E~~~l~~~~~~~a~~~~~~~~~p~lv~~~tF~~~~- 521 (1333)
++++++.|+-.+..-+.|.|-.+||.|+-|+.-.++... +++.|-..++...-+ ++..+..- -.+....++..++
T Consensus 204 ~~~N~Adn~as~~~~dsL~Nye~VKsfNnE~~Ea~~y~~~l~~~~~~~~~~~~sl-~~lnfgQ~--~iFsv~~~~im~l~ 280 (591)
T KOG0057|consen 204 KAMNNADNSASRRAYDSLINYEIVKSFNNEEYEASRYDGSLKTYERAGLKYSSSL-AFLNFGQK--AIFSVALTFIMVLG 280 (591)
T ss_pred HHHHhhhhHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHhhhhHHhHH-HHHHHHHH--HHHHHHHHHHHHHH
Confidence 999999999999999999999999999999988877755 455554444333222 22222111 1111122222222
Q ss_pred ---HhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCCccEEEeeeEE
Q 000720 522 ---LLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPITEPTSKASDVAIDIEAGEY 598 (1333)
Q Consensus 522 ---~~~~~Lt~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~~~~~~~~~~~~I~i~~~~f 598 (1333)
...+.+|.+...-.-+++..|..|+..+...+..+.|+..-+.-....++.+++... ...|....+..|+|+|++|
T Consensus 281 ~~gi~~~~mtvgdlv~~n~l~~qL~~~l~~Lg~vyr~~~q~l~Dm~~~~~l~~~~~~i~~-~~~~i~~~~~~I~F~dV~f 359 (591)
T KOG0057|consen 281 SNGIAAGKMTVGDLVMVNSLLFQLSLPLNFLGSVYRELRQALTDMRTLFILLEVDEDIQE-AALPIELFGGSIEFDDVHF 359 (591)
T ss_pred hhhhhhccccccchhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHhhhhhhhhhhh-ccCCcccCCCcEEEEeeEE
Confidence 345679999999999999999999999999999999988877766555544442111 0123333455699999999
Q ss_pred EcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC-------------eEEEE
Q 000720 599 AWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------------KKAYV 664 (1333)
Q Consensus 599 sw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g-------------~iayv 664 (1333)
+|.++ +++|++ ||+|++||.+||+|+|||||||++++|+++.+ .+|++ .++| .||||
T Consensus 360 ~y~~k-------~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I-~IdG~dik~~~~~SlR~~Ig~V 430 (591)
T KOG0057|consen 360 SYGPK-------RKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSI-LIDGQDIKEVSLESLRQSIGVV 430 (591)
T ss_pred EeCCC-------CceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcE-EECCeeHhhhChHHhhhheeEe
Confidence 99854 579999 99999999999999999999999999999999 89996 8887 37999
Q ss_pred cCCCCCCCCCHHHHhccCCcCCH-HHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHHccCCCEEE
Q 000720 665 PQSSWIQTGTIRENILFGKDMRQ-SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYI 743 (1333)
Q Consensus 665 ~Q~~~i~~~Tv~enI~~g~~~~~-~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ill 743 (1333)
||+..+||.||.+||.+|.+.-. +...++.+..++.+-+..+|+|.+|.+||+|..|||||||||+||||+.+||+|++
T Consensus 431 PQd~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~ 510 (591)
T KOG0057|consen 431 PQDSVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILL 510 (591)
T ss_pred CCcccccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEE
Confidence 99999999999999999987432 22233344445777789999999999999999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhcCCEEEEEeCCeEEEccChHHHHhhcchHHHHHH
Q 000720 744 FDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQM 818 (1333)
Q Consensus 744 LDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~aD~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~ 818 (1333)
+|||||+||.++.+.+++.+ +....+||+|+|-|+++.++.||+|+++++|++.+.|+++|+++ +++.+.++.
T Consensus 511 ~DEaTS~LD~~TE~~i~~~i-~~~~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e~gth~ell~-~s~~~~~~w 583 (591)
T KOG0057|consen 511 LDEATSALDSETEREILDMI-MDVMSGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEYGTHSELLA-PSELYADLW 583 (591)
T ss_pred ecCcccccchhhHHHHHHHH-HHhcCCCeEEEEEecchhHhcCCEEEEEECCeeEEeccHHHHhh-hhhHHHHHh
Confidence 99999999999999998754 44778999999999999999999999999999999999999998 666555554
No 37
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=3e-53 Score=577.06 Aligned_cols=465 Identities=17% Similarity=0.169 Sum_probs=335.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccc---CCCChHHHHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhH
Q 000720 341 GANRIGIRVRSALTVLIYKRSMAIKF---AGPSSGIIINMINVDVERIGDFFLY-IHRIWLLPVQVFLALVILYKNLGAA 416 (1333)
Q Consensus 341 ~~~~~~~rir~~l~~~iy~K~L~ls~---~~~~~G~i~nlms~D~~~i~~~~~~-~~~~w~~plqi~~~l~lL~~~lG~~ 416 (1333)
...+...++|. .++++.++.+. ...++|+++|.++.|++.+.+.+.. +..+....++++.++.++..... +
T Consensus 977 ~~~~~~~~lr~----~l~~~ll~~p~~ff~~~~~G~ilnr~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~~~~~~~-~ 1051 (1495)
T PLN03232 977 SSLHAAKRLHD----AMLNSILRAPMLFFHTNPTGRVINRFSKDIGDIDRNVANLMNMFMNQLWQLLSTFALIGTVST-I 1051 (1495)
T ss_pred HHHHHHHHHHH----HHHHHHHcCCeeeeCcCCchHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 34455555555 45555555443 2338999999999999999887543 33444444555554444432222 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 417 PAFAALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLY 496 (1333)
Q Consensus 417 a~l~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~R~~~~~E~L~~Ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~ 496 (1333)
..++.+.+.++.........+..+..++.....+..-.+..+|.++|+++||.|++|+.|.++..+..+...+.......
T Consensus 1052 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~~~~~~~E~l~G~~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~ 1131 (1495)
T PLN03232 1052 SLWAIMPLLILFYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYDRMAKINGKSMDNNIRFTLANTS 1131 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhcChHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222222222222223333445555556666677889999999999999999999988776655444432221111
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHh-cCCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 497 TCSAIAFLFWASPTLVSVITF-GVCILL-KTPLT-----SGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEF 569 (1333)
Q Consensus 497 ~~a~~~~~~~~~p~lv~~~tF-~~~~~~-~~~Lt-----~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~f 569 (1333)
......+..... ...++.+ +.+.+. .+.+. ++.+-.+++....+..|+..+...+..+..+.+|.+||.++
T Consensus 1132 ~~~wl~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~eRi~e~ 1209 (1495)
T PLN03232 1132 SNRWLTIRLETL--GGVMIWLTATFAVLRNGNAENQAGFASTMGLLLSYTLNITTLLSGVLRQASKAENSLNSVERVGNY 1209 (1495)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111011100000 0111112 122222 22221 22222345555667789999999999999999999999999
Q ss_pred hcccCCCCC-CC--CCC-CCCCCccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHh
Q 000720 570 IKEDNQKKP-IT--EPT-SKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSIL 644 (1333)
Q Consensus 570 L~~~e~~~~-~~--~~~-~~~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~il 644 (1333)
++.+++.+. .+ ..+ ..+.++.|+++|++|+|+++ .+++|+| ||+|++||++||||++|||||||+++|+
T Consensus 1210 ~~~~~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~~------~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~ 1283 (1495)
T PLN03232 1210 IDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPG------LPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALF 1283 (1495)
T ss_pred hcCCccccccccCCCCCCCCCCCCcEEEEEEEEEECCC------CCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 986652211 11 111 11234579999999999643 3579999 9999999999999999999999999999
Q ss_pred CCCcCCCCcEEEECC-------------eEEEEcCCCCCCCCCHHHHhccCCcCCHHHHHHHHHHcccchHHHhhcCCCc
Q 000720 645 GEIPRISGAAIKVHG-------------KKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDL 711 (1333)
Q Consensus 645 G~~~~~~G~~i~~~g-------------~iayv~Q~~~i~~~Tv~enI~~g~~~~~~~~~~v~~~~~l~~d~~~~~~g~~ 711 (1333)
|+++|++|++ .++| +++||||+|.+|++||||||..+.+.+++...++++.+++.+.++.+|+|.+
T Consensus 1284 rl~~p~~G~I-~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~~~sdeei~~al~~a~l~~~I~~lp~GLd 1362 (1495)
T PLN03232 1284 RIVELEKGRI-MIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLD 1362 (1495)
T ss_pred CCCcCCCceE-EECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCC
Confidence 9999999996 7776 4799999999999999999999888888888899999999999999999999
Q ss_pred cccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhcCCEEEE
Q 000720 712 SVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLV 791 (1333)
Q Consensus 712 t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~aD~i~v 791 (1333)
|.+|++|.+||||||||++||||++++|+|+|||||||+||+++.+.+. +.++...+++|+|+|+|+++.+..||+|+|
T Consensus 1363 t~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq-~~L~~~~~~~TvI~IAHRl~ti~~~DrIlV 1441 (1495)
T PLN03232 1363 AEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQ-RTIREEFKSCTMLVIAHRLNTIIDCDKILV 1441 (1495)
T ss_pred ceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHH-HHHHHHcCCCEEEEEeCCHHHHHhCCEEEE
Confidence 9999999999999999999999999999999999999999999977664 556666789999999999999999999999
Q ss_pred EeCCeEEEccChHHHHhhcchHHHHHHHh
Q 000720 792 MKDGKIEQSGKYEDLIADQNSELVRQMKA 820 (1333)
Q Consensus 792 l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 820 (1333)
|++|+|++.|+++|++++.+..+.++...
T Consensus 1442 L~~G~ivE~Gt~~eLl~~~~~~f~~l~~~ 1470 (1495)
T PLN03232 1442 LSSGQVLEYDSPQELLSRDTSAFFRMVHS 1470 (1495)
T ss_pred EECCEEEEECCHHHHHhCCCCHHHHHHHH
Confidence 99999999999999998555567776654
No 38
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=7.8e-53 Score=571.96 Aligned_cols=459 Identities=17% Similarity=0.188 Sum_probs=342.3
Q ss_pred HHHHHHHHHhcccc---CCCChHHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 000720 353 LTVLIYKRSMAIKF---AGPSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFV 428 (1333)
Q Consensus 353 l~~~iy~K~L~ls~---~~~~~G~i~nlms~D~~~i~~~~~-~~~~~w~~plqi~~~l~lL~~~lG~~a~l~gl~~~~~~ 428 (1333)
+-..+|++.++.+. ...+.|+|+|.++.|++.+.+.+. .+..+....+.++.++.+++..-. +..++.+++.++.
T Consensus 1033 l~~~l~~~ll~~p~~ffd~~~~G~ilnR~s~Di~~id~~l~~~l~~~~~~~~~~i~~li~~~~~~p-~~~~~~i~~~~~~ 1111 (1560)
T PTZ00243 1033 MHRDLLRSVSRGTMSFFDTTPLGRILNRFSRDIDILDNTLPMSYLYLLQCLFSICSSILVTSASQP-FVLVALVPCGYLY 1111 (1560)
T ss_pred HHHHHHHHHHcCChhhccCCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 33555566655543 233899999999999999998754 355555556666655555443222 3333222222233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Q 000720 429 MVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIAFL-FWA 507 (1333)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~D~R~~~~~E~L~~Ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~a~~~~~-~~~ 507 (1333)
..+...+.+..+..++.....++.-.+..+|.++|+++||.|++|+.|.++..+.-+...+...+........... ...
T Consensus 1112 ~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~w~~~~~~~l 1191 (1560)
T PTZ00243 1112 YRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQEALRRLDVVYSCSYLENVANRWLGVRVEFL 1191 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555556666666677777899999999999999999999988887554333222111111111111111 111
Q ss_pred -HHHHHHHHHHHHHH--HhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCC--CC---
Q 000720 508 -SPTLVSVITFGVCI--LLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKK--PI--- 579 (1333)
Q Consensus 508 -~p~lv~~~tF~~~~--~~~~~Lt~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~--~~--- 579 (1333)
....+.++.++++. .....++++.+..++.+...+..|+..+...+..+.++++|++||.+|++..++++ ..
T Consensus 1192 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~a~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~~e~~~~~~~~ 1271 (1560)
T PTZ00243 1192 SNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQTTATLNWLVRQVATVEADMNSVERLLYYTDEVPHEDMPELDEE 1271 (1560)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccc
Confidence 11111122222222 22345788888888888788899999999999999999999999999996432110 00
Q ss_pred --------------------CC--C----CCCCCCccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCC
Q 000720 580 --------------------TE--P----TSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSV 632 (1333)
Q Consensus 580 --------------------~~--~----~~~~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~ 632 (1333)
+. . +.....+.|+|+|++|+|+++ ..++|+| ||+|++||++||||++
T Consensus 1272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~------~~~vL~~vsf~I~~GekVaIVGrT 1345 (1560)
T PTZ00243 1272 VDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYREG------LPLVLRGVSFRIAPREKVGIVGRT 1345 (1560)
T ss_pred ccccccccccccccccccccccCCCcccCCCCCCCCeEEEEEEEEEeCCC------CCceeecceEEECCCCEEEEECCC
Confidence 00 0 011123579999999999754 3468999 9999999999999999
Q ss_pred CCChhHHHHHHhCCCcCCCCcEEEECC-------------eEEEEcCCCCCCCCCHHHHhccCCcCCHHHHHHHHHHccc
Q 000720 633 GSGKSSLLSSILGEIPRISGAAIKVHG-------------KKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCAL 699 (1333)
Q Consensus 633 GsGKSTLl~~ilG~~~~~~G~~i~~~g-------------~iayv~Q~~~i~~~Tv~enI~~g~~~~~~~~~~v~~~~~l 699 (1333)
|||||||+++|+|+++|.+|++ .++| +++||||+|.+|++||||||..+.+.+++...++++.|++
T Consensus 1346 GSGKSTLl~lLlrl~~p~~G~I-~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp~~~~sdeeI~~Al~~a~l 1424 (1560)
T PTZ00243 1346 GSGKSTLLLTFMRMVEVCGGEI-RVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFLEASSAEVWAALELVGL 1424 (1560)
T ss_pred CCCHHHHHHHHhCCCCCCCcEE-EECCEEcccCCHHHHHhcceEECCCCccccccHHHHhCcccCCCHHHHHHHHHHCCC
Confidence 9999999999999999999996 7776 4799999999999999999988777778888899999999
Q ss_pred chHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHHccC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecC
Q 000720 700 NQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSN-SDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTH 778 (1333)
Q Consensus 700 ~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~-~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH 778 (1333)
.+.++.+|+|.+|.+|++|.+||||||||++||||++++ |+|+|||||||+||+++.+.+. +.++...+++|+|+|+|
T Consensus 1425 ~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq-~~L~~~~~~~TvI~IAH 1503 (1560)
T PTZ00243 1425 RERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQ-ATVMSAFSAYTVITIAH 1503 (1560)
T ss_pred hHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHH-HHHHHHCCCCEEEEEec
Confidence 999999999999999999999999999999999999996 8999999999999999977664 45666678899999999
Q ss_pred chhhhhcCCEEEEEeCCeEEEccChHHHHhhcchHHHHHHHh
Q 000720 779 QLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKA 820 (1333)
Q Consensus 779 ~~~~l~~aD~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 820 (1333)
+++.+..||+|++|++|+|++.|+++|++++++..|.++...
T Consensus 1504 Rl~ti~~~DrIlVLd~G~VvE~Gt~~eLl~~~~~~f~~l~~~ 1545 (1560)
T PTZ00243 1504 RLHTVAQYDKIIVMDHGAVAEMGSPRELVMNRQSIFHSMVEA 1545 (1560)
T ss_pred cHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHH
Confidence 999999999999999999999999999997556677777654
No 39
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.1e-52 Score=478.02 Aligned_cols=458 Identities=21% Similarity=0.323 Sum_probs=341.3
Q ss_pred HHHHHHHHHHHHHHHHHHhccccCCC---ChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhhHHH
Q 000720 344 RIGIRVRSALTVLIYKRSMAIKFAGP---SSGIIINMINVDVERIGDFFLYIHRIWLLPVQVFLALVIL--YKNLGAAPA 418 (1333)
Q Consensus 344 ~~~~rir~~l~~~iy~K~L~ls~~~~---~~G~i~nlms~D~~~i~~~~~~~~~~w~~plqi~~~l~lL--~~~lG~~a~ 418 (1333)
....|+=+.+.-.+|+|....+.... .+|++.|.+..|++.+++....+...|...+-++++..+. +..++ .+.
T Consensus 84 ~AtfrvL~~lRv~~f~kl~p~sp~~~~r~r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~~~~~~~~i~L~f~~~~-~Al 162 (573)
T COG4987 84 DATFRVLSALRVRLFEKLEPLSPALLLRYRSGDLLNRLVADVDALDNLYLRVIAPAVVALVLIAVVTIGLSFFSIP-LAL 162 (573)
T ss_pred HHHHHHHHHHHHHHHHhhccCChHHHHhcChHhHHHHHHhhHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHhhHH-HHH
Confidence 34557777888889999988776533 8999999999999999999877777776655444433332 44444 555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 419 FAALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTC 498 (1333)
Q Consensus 419 l~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~R~~~~~E~L~~Ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~ 498 (1333)
+.++..++..+.+...+.+.-++..++..+.+..=-.-..+.+.|+.-.+++|-++.|.+.+++. |..|.+..+...
T Consensus 163 ll~~~ll~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l~~~---e~~~~~~q~k~~ 239 (573)
T COG4987 163 LLGLILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALEAT---EASWLKAQRKQA 239 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 66665555555555666666666666666666666677889999999999999999998887653 333333222111
Q ss_pred ---HHHHHHHHH-HHHHHH--HHHHHHHHHhcCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 000720 499 ---SAIAFLFWA-SPTLVS--VITFGVCILLKTPLT-SGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIK 571 (1333)
Q Consensus 499 ---a~~~~~~~~-~p~lv~--~~tF~~~~~~~~~Lt-~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~ 571 (1333)
....+.... .-.++. .++++.-.-.| .++ +..+...++.|..+..-.-.-|.++..+-++..|.+|+.+.+.
T Consensus 240 ~~~~~~~a~~~l~~g~~v~~~l~w~a~~~~~G-~~~~~~aa~~ll~~f~~~eaf~~L~~~A~~~lgq~~~Sa~Rl~~i~~ 318 (573)
T COG4987 240 RFTGLSDAILLLIAGLLVIGLLLWMAAQVGAG-ALAQPGAALALLVIFAALEAFEPLAPGAFQHLGQVIASARRLNDILD 318 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCC-CcchhHHHHHHHHHHHHHHHHhhhcchhHHHhhHHHHHHHHHhhhcc
Confidence 111122111 111121 11221111122 233 2222222222322221111223667788889999999999998
Q ss_pred ccCCCCCC-CCCCCCCCCccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcC
Q 000720 572 EDNQKKPI-TEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR 649 (1333)
Q Consensus 572 ~~e~~~~~-~~~~~~~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~ 649 (1333)
++++.... +..+. .+..++++|++|+|+.+ +.+.|+| ||++++||++||+|++|||||||++.|.|-++|
T Consensus 319 q~~e~~~~~~~~~~--~~~~l~~~~vsF~y~~~------~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~ 390 (573)
T COG4987 319 QKPEVTFPDEQTAT--TGQALELRNVSFTYPGQ------QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDP 390 (573)
T ss_pred CCcccCCCccccCC--ccceeeeccceeecCCC------ccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCC
Confidence 87632211 11111 12279999999999976 4689999 999999999999999999999999999999999
Q ss_pred CCCcEEEECC-------------eEEEEcCCCCCCCCCHHHHhccCCcC-CHHHHHHHHHHcccchHHHhhcCCCccccC
Q 000720 650 ISGAAIKVHG-------------KKAYVPQSSWIQTGTIRENILFGKDM-RQSFYEEVLEGCALNQDIEMWADGDLSVVG 715 (1333)
Q Consensus 650 ~~G~~i~~~g-------------~iayv~Q~~~i~~~Tv~enI~~g~~~-~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig 715 (1333)
++|++ ..+| .+++++|.+.+|++|+|||+..+++- .++...++++..+|++-++..|+|.+|.+|
T Consensus 391 ~~G~i-~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lg 469 (573)
T COG4987 391 QQGSI-TLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLG 469 (573)
T ss_pred CCCee-eECCcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhc
Confidence 99997 7766 46899999999999999999998764 456677889999999999999999999999
Q ss_pred CCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhcCCEEEEEeCC
Q 000720 716 ERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDG 795 (1333)
Q Consensus 716 ~~g~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~aD~i~vl~~G 795 (1333)
|.|..||||||||++|||++.+|++++||||||.|||+.|++++.+.+ ....+|||+|+|||++..++.+|+|++|++|
T Consensus 470 e~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll-~~~~~~kTll~vTHrL~~le~~drIivl~~G 548 (573)
T COG4987 470 EGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALL-FEHAEGKTLLMVTHRLRGLERMDRIIVLDNG 548 (573)
T ss_pred cCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHH-HHHhcCCeEEEEecccccHhhcCEEEEEECC
Confidence 999999999999999999999999999999999999999999998754 4556799999999999999999999999999
Q ss_pred eEEEccChHHHHhhcchHHHHH
Q 000720 796 KIEQSGKYEDLIADQNSELVRQ 817 (1333)
Q Consensus 796 ~i~~~g~~~~l~~~~~~~~~~~ 817 (1333)
+|+++|+|++++. .++.+.++
T Consensus 549 kiie~G~~~~Ll~-~~g~~~~l 569 (573)
T COG4987 549 KIIEEGTHAELLA-NNGRYKRL 569 (573)
T ss_pred eeeecCCHHhhhc-cccHHHHH
Confidence 9999999999998 55555444
No 40
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=7.7e-52 Score=517.51 Aligned_cols=504 Identities=14% Similarity=0.148 Sum_probs=360.2
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 269 IIH-AVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGI 347 (1333)
Q Consensus 269 l~~-~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~~~~ 347 (1333)
+++ .+++.++...++.++..++..+.|++++.+++..... ... ...+..++++.. .++.....+...+.+.
T Consensus 11 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~i~~~~~~----~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 82 (555)
T TIGR01194 11 LLRSPFPAITAFSIALGLAGGLAIIALLASINNAIHEENFL----GQG-SLFSFGGLCLLA---LLFRIGADIFPAYAGM 82 (555)
T ss_pred HHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc----cch-HHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 456 6788888888999999999999999998887532110 101 111111222221 2222233344566777
Q ss_pred HHHHHHHHHHHHHHhccccC---CCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 000720 348 RVRSALTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFFLYIHRIWLLPVQVFLALVILYKNLGAAPAFAALFS 424 (1333)
Q Consensus 348 rir~~l~~~iy~K~L~ls~~---~~~~G~i~nlms~D~~~i~~~~~~~~~~w~~plqi~~~l~lL~~~lG~~a~l~gl~~ 424 (1333)
++...+...+|+|.++++.. ..++|+++|.++.|++.+.++...+..+....+.+++++++++.. .|..++..++.
T Consensus 83 ~~~~~lR~~l~~~l~~~~~~~~~~~~~G~l~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~L~li~l~~ 161 (555)
T TIGR01194 83 HIIANLRIALCEKILGAPIEEIDRRGAHNLIPLLTHDIDQINAFLFIFPPIAIALAIFFFCIAYLAYL-SVPMFAITISA 161 (555)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHhcCcchhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHH
Confidence 78888888899999987653 238999999999999999987655545555555555444444322 22333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchHH--HHHHHH----HHHHHHHHHHHHHHHHHH
Q 000720 425 TIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQ--EFLKKL----LRLREIERDSLKKYLYTC 498 (1333)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~D~R~~~~~E~L~~Ir~IK~~~wE~--~f~~~i----~~~R~~E~~~l~~~~~~~ 498 (1333)
+++.+.+..+..++.++...+..+..++..+...|.+.|+++||.++.|+ ...+++ ++.|+...+..+. .
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 237 (555)
T TIGR01194 162 IIIGTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADLHIIEILI----F 237 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHHHHHHHHHHHHHH----H
Confidence 33334444455566667777777888888999999999999999999853 333333 3333333222111 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---hcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-
Q 000720 499 SAIAFLFWASPTLVSVITFGVCIL---LKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDN- 574 (1333)
Q Consensus 499 a~~~~~~~~~p~lv~~~tF~~~~~---~~~~Lt~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e- 574 (1333)
.....+....+. +.++.+++ ..+.++.+.+++.+.+...+..|+..+...+..+.++++|.+||.++++.++
T Consensus 238 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ll~~~~~ 313 (555)
T TIGR01194 238 IAAENFGQLLFF----LLIGCALFAAAMFASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADFGERFNE 313 (555)
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 111111111111 11111111 1257899999999999999999999999999999999999999999986422
Q ss_pred C-CC--CCCCC-----CCCCCCccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhC
Q 000720 575 Q-KK--PITEP-----TSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILG 645 (1333)
Q Consensus 575 ~-~~--~~~~~-----~~~~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG 645 (1333)
+ .. ..+.. +.......|+++|++|+|++.+. ...++|+| |+++++||+++|+||||||||||+++|+|
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~---~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g 390 (555)
T TIGR01194 314 PEPELELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEG---SEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCG 390 (555)
T ss_pred ccccccccccccccccccCCCCceEEEEEEEEEeCCCCC---CcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 1 10 00000 11112356999999999975300 12468999 99999999999999999999999999999
Q ss_pred CCcCCCCcEEEECC-------------eEEEEcCCCCCCCCCHHHHhccCCcCCHHHHHHHHHHcccchHHHhhcCCCcc
Q 000720 646 EIPRISGAAIKVHG-------------KKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLS 712 (1333)
Q Consensus 646 ~~~~~~G~~i~~~g-------------~iayv~Q~~~i~~~Tv~enI~~g~~~~~~~~~~v~~~~~l~~d~~~~~~g~~t 712 (1333)
+++|++|++ .++| .++|++|+|+++++|+++|+ ..+..++..+++++.+++.++++.+|+|.+|
T Consensus 391 ~~~p~~G~i-~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~--~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t 467 (555)
T TIGR01194 391 LYIPQEGEI-LLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDE--GEHASLDNAQQYLQRLEIADKVKIEDGGFST 467 (555)
T ss_pred CCCCCCcEE-EECCEECCCCCHHHHHhhCcEEccChhhhhhhhhccc--ccchhHHHHHHHHHHcCCchhhcccccccCC
Confidence 999999986 6765 36999999999999999995 2334455667788888999899999999887
Q ss_pred ccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCeEEEecCchhhhhcCCEEEE
Q 000720 713 VVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-LSQKTVLYTTHQLEFLDAADLVLV 791 (1333)
Q Consensus 713 ~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~-~~~~TvIlvtH~~~~l~~aD~i~v 791 (1333)
. .+||||||||++||||++++|+++|||||||+||+++.+++.+.+++.. .+++|+|++||+++.++.||+|++
T Consensus 468 ~-----~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d~i~~ 542 (555)
T TIGR01194 468 T-----TALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIK 542 (555)
T ss_pred c-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEE
Confidence 3 7999999999999999999999999999999999999998887666544 468999999999999989999999
Q ss_pred EeCCeEEEc
Q 000720 792 MKDGKIEQS 800 (1333)
Q Consensus 792 l~~G~i~~~ 800 (1333)
|++|++++.
T Consensus 543 l~~G~i~~~ 551 (555)
T TIGR01194 543 LAAGCIVKD 551 (555)
T ss_pred EECCEEEEe
Confidence 999999864
No 41
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=1.9e-50 Score=504.94 Aligned_cols=500 Identities=15% Similarity=0.158 Sum_probs=344.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 265 LPQVIIHAVWKSLALNAAFAGVNTIASYIG-PFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGAN 343 (1333)
Q Consensus 265 l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~-P~ll~~li~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~ 343 (1333)
+++.+++.+++.++...++.++..++..+. |++.+.+++.+.+ . ... -+.+++.+++..++..+ ..+...
T Consensus 3 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~lid~~~~-~---~~~-~~~~~~~~~~~~~~~~~----~~~~~~ 73 (547)
T PRK10522 3 LLRLVWRQYRWPFISVMALSLASAALGIGLIAFINQRLIETADT-S---LLV-LPEFLGLLLLLMAVTLG----SQLALT 73 (547)
T ss_pred hHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-c---chH-HHHHHHHHHHHHHHHHH----HHHHHH
Confidence 566777888888888888888888888764 6777888875532 1 111 11111111112222222 222333
Q ss_pred HHHHHHHHHHHHHHHHHHhcccc---CCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 000720 344 RIGIRVRSALTVLIYKRSMAIKF---AGPSSGIIINMINVDVERIGDFFLYIHRIWLLPVQVFLALVILYKNLGAAPAFA 420 (1333)
Q Consensus 344 ~~~~rir~~l~~~iy~K~L~ls~---~~~~~G~i~nlms~D~~~i~~~~~~~~~~w~~plqi~~~l~lL~~~lG~~a~l~ 420 (1333)
+.+.++...+...+|+|.++++. ...++|+++|.++.|++.+..+...+..++...+.+++++++++.. .|..+++
T Consensus 74 ~~~~~~~~~lR~~l~~~ll~~~~~~~~~~~~g~~lsrl~~dv~~i~~~~~~l~~~~~~~~~~i~~~~~l~~~-~~~l~li 152 (547)
T PRK10522 74 TLGHHFVYRLRSEFIKRILDTHVERIEQLGSASLLASLTSDVRNITIAFVRLPELVQGIILTLGSAAYLAWL-SPKMLLV 152 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHhccCccchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHH
Confidence 44555555556666777776653 2348999999999999999887666667777778777777666643 3255555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhc--hHHHHHHHH----HHHHHHHHHHHHHH
Q 000720 421 ALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLS--WEQEFLKKL----LRLREIERDSLKKY 494 (1333)
Q Consensus 421 gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~R~~~~~E~L~~Ir~IK~~~--wE~~f~~~i----~~~R~~E~~~l~~~ 494 (1333)
.++++++.+.+...+.++..+..++.++..+++.+..+|.++|++++++.+ .++.+.++. ++.++...+..+
T Consensus 153 ~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 230 (547)
T PRK10522 153 TAIWMAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELTLNRERAEYVFENEYEPDAQEYRHHIIRADT-- 230 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhccHHHHHHHHHHHHhHHHHHHHhhhHHHHH--
Confidence 555555555566777888888888889999999999999999999998433 223344443 333333332211
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 000720 495 LYTCSAIAFLFWASPTLVSVITFGVCILLKTP---LTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIK 571 (1333)
Q Consensus 495 ~~~~a~~~~~~~~~p~lv~~~tF~~~~~~~~~---Lt~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~ 571 (1333)
......... .++..+.++.+.+.++. .+.+.+.........+..|+..+...+..+.+++++.+||.+++.
T Consensus 231 --~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~l~~ 304 (547)
T PRK10522 231 --FHLSAVNWS----NIMMLGAIGLVFYMANSLGWADTNVAATYSLTLLFLRTPLLSAVGALPTLLSAQVAFNKLNKLAL 304 (547)
T ss_pred --HHHHHHHHH----HHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 111111111 11111122222222211 222222222222333668999999999999999999999999986
Q ss_pred ccCCCCCCCCCCCCCCCccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCC
Q 000720 572 EDNQKKPITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRI 650 (1333)
Q Consensus 572 ~~e~~~~~~~~~~~~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~ 650 (1333)
.+++++.....+ .+....++++|++|+|+.+ ++.|+| |+++++||+++|+||||||||||+++|+|+++|+
T Consensus 305 ~~~~~~~~~~~~-~~~~~~i~~~~v~f~y~~~-------~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~ 376 (547)
T PRK10522 305 APYKAEFPRPQA-FPDWQTLELRNVTFAYQDN-------GFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQ 376 (547)
T ss_pred cccccccccccc-cCcCceEEEEEEEEEeCCC-------CeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 544221111111 1112469999999999743 368999 9999999999999999999999999999999999
Q ss_pred CCcEEEECC-------------eEEEEcCCCCCCCCCHHHHhccCCcCCHHHHHHHHHHcccchHHHhhcCCCccccCCC
Q 000720 651 SGAAIKVHG-------------KKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGER 717 (1333)
Q Consensus 651 ~G~~i~~~g-------------~iayv~Q~~~i~~~Tv~enI~~g~~~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~ 717 (1333)
+|++ .++| +++|++|+|.++++|++|| +...+++..++.++.+++..+... ++|. .+
T Consensus 377 ~G~i-~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n---~~~~~~~~~~~~~~~~~l~~~~~~-~~~~-----~~ 446 (547)
T PRK10522 377 SGEI-LLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE---GKPANPALVEKWLERLKMAHKLEL-EDGR-----IS 446 (547)
T ss_pred CeEE-EECCEECCCCCHHHHhhheEEEecChhHHHHhhccc---cCchHHHHHHHHHHHcCCchhhhc-cccC-----CC
Confidence 9986 6655 4799999999999999999 344455566667777666554432 2221 24
Q ss_pred CCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEecCchhhhhcCCEEEEEeCCe
Q 000720 718 GINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDAADLVLVMKDGK 796 (1333)
Q Consensus 718 g~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~-~~~TvIlvtH~~~~l~~aD~i~vl~~G~ 796 (1333)
|.+||||||||++||||++++|+++|||||||+||+++++.+.+.+.+... +++|+|+|||+++.+..||+|++|++|+
T Consensus 447 G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~ 526 (547)
T PRK10522 447 NLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQ 526 (547)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCCEEEEEECCE
Confidence 789999999999999999999999999999999999998888776544433 4899999999999999999999999999
Q ss_pred EEEc
Q 000720 797 IEQS 800 (1333)
Q Consensus 797 i~~~ 800 (1333)
+++.
T Consensus 527 i~e~ 530 (547)
T PRK10522 527 LSEL 530 (547)
T ss_pred EEEe
Confidence 9876
No 42
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=2.2e-51 Score=512.06 Aligned_cols=434 Identities=21% Similarity=0.295 Sum_probs=383.0
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHhcccc-ccc--ch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 894 PVILLCQVLFQALQMGSNYWIAWATDEK-RKV--SR-EQLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITS 969 (1333)
Q Consensus 894 ~~~ll~~~l~~~~~~~~~~wl~~~~~~~-~~~--~~-~~~l~vy~~l~~~~~i~~~~~~~~~~~~~~~~s~~L~~~ll~~ 969 (1333)
.-+++..++.+++.+++++..+..+|.. +.. +. ......+++.++...++.++|.+++.+.+.+....+-.+.++|
T Consensus 157 ~~v~~~sl~l~i~~l~~p~~~q~viD~Vl~~~~~~tL~vl~ig~~~~~l~~~~l~~lr~~~~~~~~~rld~~l~~~~~~h 236 (709)
T COG2274 157 FEVLLASLLLQLLALATPLFSQIVIDKVLPDASRSTLTVLAIGLLLAALFEALLRLLRTYLIAHLGKRLDLELSGRFFRH 236 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3455566778888899999988877642 222 22 2233445566777889999999999999999999999999999
Q ss_pred HhcCccccccccCcchhHHHHhccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 000720 970 VFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQAYYIT 1049 (1333)
Q Consensus 970 il~ap~~fFd~tp~GrIlnRfs~Di~~vd~~l~~~l~~~~~~~~~~l~~ivv~~~~~~~l~lv~ipl~~~~~~~~~~y~~ 1049 (1333)
+++.|++||.++++|++++|++ |++.|.+.+...+...+..++..+..+++|++.+|+++++.+..++++..+.....+
T Consensus 237 ll~Lpl~~f~~r~~Ge~~sR~~-el~~Ir~flt~~~l~~iiD~~~~~i~l~vm~~ys~~L~li~l~~~~l~~l~~~~~~~ 315 (709)
T COG2274 237 LLRLPLSYFEKRSVGEIISRVR-ELEQIREFLTGSILTLIIDLLFALIFLAVMFLYSWKLTLIVLAAIPLNVLITLIFQP 315 (709)
T ss_pred HHcCcHHHccCCChhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999997 899999999999999999999999999999999999999988888888777777777
Q ss_pred HHHHHHHHHhHhhchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 1050 TARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVL 1129 (1333)
Q Consensus 1050 ~srel~rl~~~~~spl~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~ll~~~~~~~~~ 1129 (1333)
..|+..+...+..+...++..|++.|+.|||+.+.|+++..++++..+++.+..+.......|......++..+...+++
T Consensus 316 ~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~v~iL 395 (709)
T COG2274 316 LLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLALILNTIKSLLQQLSSVLIL 395 (709)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777778888899999999999999999999999999999999999999999999999999999888887777666
Q ss_pred HHHHh-ccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCcccCCCCCCCCCCCcccE
Q 000720 1130 IILVT-LPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKI 1208 (1333)
Q Consensus 1130 ~~~~~-~~~~~~~~g~~gl~l~y~l~l~~~l~~~v~~~~~le~~~~SveRI~~~~~~p~E~~~~~~~~~~~~~wp~~G~I 1208 (1333)
++++. ...+..+.|..-.+.+.+-.+..++..++..+.+++....+.||+.+.++.|+|.+. +..+...|+.+|+|
T Consensus 396 ~~G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~~~---~~~~~~~~~~~g~I 472 (709)
T COG2274 396 WFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQEG---DKTLIHLPKLQGEI 472 (709)
T ss_pred HHHHHHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc---ccccccccccCceE
Confidence 66543 345677888777777888888999999999999999999999999999999988542 22244556778999
Q ss_pred EEEEEEEEECCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCCCChHHHhhcCeEe
Q 000720 1209 ELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSII 1288 (1333)
Q Consensus 1209 ~f~nVsf~Y~~~~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~i~l~~LRs~isiV 1288 (1333)
+|+||+|+|+++.|++|+|+|++|+|||+|||||+||||||||+++|.|+|+|++|+|++||+|++++++++||++|++|
T Consensus 473 ~~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V 552 (709)
T COG2274 473 EFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYV 552 (709)
T ss_pred EEEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEE
Confidence 99999999999988999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccchhhhcCCCC-CCCHHHHHHHHHhCCCCcccccCC
Q 000720 1289 PQDPMLFQGTVRTNLDPLE-QHSDQEIWEVKISKLLTHKSYQCE 1331 (1333)
Q Consensus 1289 pQdp~LF~GTIR~NLdp~~-~~sDeeI~~aL~~~~L~~~~~~~~ 1331 (1333)
||||+||+|||||||...+ +.+||||++|++.++..+.+.++|
T Consensus 553 ~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP 596 (709)
T COG2274 553 LQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLP 596 (709)
T ss_pred cccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcc
Confidence 9999999999999998764 578999999999999999888776
No 43
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=3.7e-50 Score=545.95 Aligned_cols=466 Identities=20% Similarity=0.226 Sum_probs=344.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccc---CCCChHHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhh
Q 000720 340 FGANRIGIRVRSALTVLIYKRSMAIKF---AGPSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGA 415 (1333)
Q Consensus 340 ~~~~~~~~rir~~l~~~iy~K~L~ls~---~~~~~G~i~nlms~D~~~i~~~~~-~~~~~w~~plqi~~~l~lL~~~lG~ 415 (1333)
+...+...+++. .++++.++.+. ...++|+|+|.++.|++.+.+.+. .+..+....+.+++.+++++...+
T Consensus 951 ~~~~~~~~~l~~----~l~~~ll~~p~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~i~~l~~i~~~~p- 1025 (1490)
T TIGR01271 951 HTLLTVSKRLHE----QMLHSVLQAPMAVLNTMKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVLGAIFVVSVLQP- 1025 (1490)
T ss_pred HHHHHHHHHHHH----HHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 334445555554 45555554432 233889999999999999998654 455555556666666665554444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 416 APAFAALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYL 495 (1333)
Q Consensus 416 ~a~l~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~R~~~~~E~L~~Ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~ 495 (1333)
+..++.++++++...+..+..+..+..++.....+....+..+|.++|+.+||.|+||+.|.++..+.-+...+......
T Consensus 1026 ~l~l~~~~l~~~~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~ 1105 (1490)
T TIGR01271 1026 YIFIAAIPVAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKALNLHTANWFLYL 1105 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 43333333333344444455555555666667777888899999999999999999999999887765432211111100
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q 000720 496 YTCSAIAFLF-WASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDN 574 (1333)
Q Consensus 496 ~~~a~~~~~~-~~~p~lv~~~tF~~~~~~~~~Lt~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e 574 (1333)
.......+.. .....++.++.+. .+.....+++.+-.++++...+..++..+...+..+..+++|.+||.+|++.++
T Consensus 1106 ~~~~wl~~~~~~i~~~~~~~~~~l--~~~~~~~~~g~~g~~l~~~~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~ 1183 (1490)
T TIGR01271 1106 STLRWFQMRIDIIFVFFFIAVTFI--AIGTNQDGEGEVGIILTLAMNILSTLQWAVNSSIDVDGLMRSVSRVFKFIDLPQ 1183 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 0000000000 0000111111111 111123456666666666677788888888888999999999999999997654
Q ss_pred CCC-CCC--------------C---CCCCCCCccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCC
Q 000720 575 QKK-PIT--------------E---PTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSG 635 (1333)
Q Consensus 575 ~~~-~~~--------------~---~~~~~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsG 635 (1333)
+.+ ..+ . .+..+..+.|+++|++|+|+++ .+++|+| ||+|++||++||||++|||
T Consensus 1184 e~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~------~~~vL~~is~~I~~GekvaIvGrSGsG 1257 (1490)
T TIGR01271 1184 EEPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEA------GRAVLQDLSFSVEGGQRVGLLGRTGSG 1257 (1490)
T ss_pred ccccccccccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCC------CcceeeccEEEEcCCCEEEEECCCCCC
Confidence 211 100 0 0111234679999999999864 3579999 9999999999999999999
Q ss_pred hhHHHHHHhCCCcCCCCcEEEECC-------------eEEEEcCCCCCCCCCHHHHhccCCcCCHHHHHHHHHHcccchH
Q 000720 636 KSSLLSSILGEIPRISGAAIKVHG-------------KKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQD 702 (1333)
Q Consensus 636 KSTLl~~ilG~~~~~~G~~i~~~g-------------~iayv~Q~~~i~~~Tv~enI~~g~~~~~~~~~~v~~~~~l~~d 702 (1333)
||||+++|+|+++ .+|++ .++| +++|+||+|.+|++||||||....+++++...++++.|++.+.
T Consensus 1258 KSTLl~lL~rl~~-~~G~I-~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~~~tdeei~~aL~~~~L~~~ 1335 (1490)
T TIGR01271 1258 KSTLLSALLRLLS-TEGEI-QIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSV 1335 (1490)
T ss_pred HHHHHHHHhhhcC-CCcEE-EECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCcccCCCHHHHHHHHHHCCCHHH
Confidence 9999999999997 78986 7776 4799999999999999999987667778888899999999999
Q ss_pred HHhhcCCCccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhh
Q 000720 703 IEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEF 782 (1333)
Q Consensus 703 ~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~ 782 (1333)
+..+|+|.+|.+|++|.+||||||||++||||++++|+|+|||||||+||+++.+.+.+ .++...+++|||+|||+++.
T Consensus 1336 i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~-~L~~~~~~~TvI~IaHRl~t 1414 (1490)
T TIGR01271 1336 IEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRK-TLKQSFSNCTVILSEHRVEA 1414 (1490)
T ss_pred HHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHH-HHHHHcCCCEEEEEecCHHH
Confidence 99999999999999999999999999999999999999999999999999999777654 55666788999999999999
Q ss_pred hhcCCEEEEEeCCeEEEccChHHHHhhcchHHHHHHHhhh
Q 000720 783 LDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKAHR 822 (1333)
Q Consensus 783 l~~aD~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~ 822 (1333)
+..+|+|++|++|+|++.|+++++++ .+..|.++..+..
T Consensus 1415 i~~~DrIlvL~~G~ivE~g~p~~Ll~-~~~~f~~l~~~~~ 1453 (1490)
T TIGR01271 1415 LLECQQFLVIEGSSVKQYDSIQKLLN-ETSLFKQAMSAAD 1453 (1490)
T ss_pred HHhCCEEEEEECCEEEEeCCHHHHHc-CCcHHHHHHHHhC
Confidence 99999999999999999999999997 5667777766544
No 44
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.4e-52 Score=468.66 Aligned_cols=523 Identities=18% Similarity=0.276 Sum_probs=378.8
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 287 NTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAK------TVESLTQRQWYFGANRIGIRVRSALTVLIYKR 360 (1333)
Q Consensus 287 ~~~~~~~~P~ll~~li~~~~~~~~~~~~~~g~~l~~~l~~~~------~~~~l~~~~~~~~~~~~~~rir~~l~~~iy~K 360 (1333)
.-++...-|.+.+.+++-+..+..+ .+..-+.++...|+-. ++.++-...|--..+-...++...+..-+.+-
T Consensus 227 ~rli~~~~pi~~k~iv~~ltap~~~-~~~~~~~~v~L~flqg~gtgsG~~~nlRtfLWi~VqQyttR~ie~~lfrHlh~L 305 (790)
T KOG0056|consen 227 GRLINVSLPILSKWIVDELTAPDTF-QYSLVFLYVFLKFLQGGGTGSGFLNNLRTFLWIPVQQYTTREIETELFRHLHNL 305 (790)
T ss_pred HHHHhhhhHHhHHHHHHhhcCcchh-hHHHHHHHHHHHHHhcCCccccchhhhheeEEEEhhHhHHHHHHHHHHHHHHhh
Confidence 3344445588888888877644432 2221233333222221 11111111111111112223444444444444
Q ss_pred HhccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 361 SMAIKFAGPSSGIIINMINVDVERIGDFFLYIHRIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFVMVSNTPLANRQE 440 (1333)
Q Consensus 361 ~L~ls~~~~~~G~i~nlms~D~~~i~~~~~~~~~~w~~plqi~~~l~lL~~~lG~~a~l~gl~~~~~~~~~~~~~~~~~~ 440 (1333)
+++++- .+.+||+...|..-.+.+.-.-.-+..+--..+.+++++...+....+|-.+..+..+.+...+...+...-.
T Consensus 306 SlrwHL-~rrtGeVLrvmdrGtssvtll~yvVF~i~PtllDl~va~vYF~~~Fn~wFgLIVfl~m~lY~~~Ti~iTeWRT 384 (790)
T KOG0056|consen 306 SLRWHL-NRRTGEVLRVMDRGTSSVTLLEYVVFQIGPTLLDLGVAMVYFFIKFNIWFGLIVFLMMLLYCYVTIKITEWRT 384 (790)
T ss_pred ceeeee-cccccceeehhccCcchhhHHHHHHhhcccHHHHhhhhhhhhhhhHhHHHHHHHHHHHHHHhheeeeeehhhH
Confidence 444433 3478999999887776665222223344444566677766665555545445444455554445555666777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 441 RFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQ----EFLKKLLRLREIERDSLKKYLYTCSAIAFLFWASPTLVSVIT 516 (1333)
Q Consensus 441 ~~~~~~~~~~D~R~~~~~E~L~~Ir~IK~~~wE~----~f~~~i~~~R~~E~~~l~~~~~~~a~~~~~~~~~p~lv~~~t 516 (1333)
++|+++..+-.+--....+.|-|..+||.|+-|+ .+.+.|.+.-+.|.+.+....++...-..++ .--+.....
T Consensus 385 k~rR~Mn~~~nesrAr~vDsllNFETVKyy~Ae~yEverYreAil~Yqk~E~ks~~sLnfLN~~Qn~Ii--~lgll~gsl 462 (790)
T KOG0056|consen 385 KARRKMNNSWNESRARQVDSLLNFETVKYYNAEDYEVERYREAILKYQKQEWKSLASLNFLNIVQNGII--GLGLLAGSL 462 (790)
T ss_pred HHHHHhhhhhhhhhhhhhhhhhcchhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh--hhHHhhhhh
Confidence 7787776655554555678888999999999886 5666777777777765544333322211111 111222333
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC-CCCCCCCCCCCCCccEEEee
Q 000720 517 FGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQ-KKPITEPTSKASDVAIDIEA 595 (1333)
Q Consensus 517 F~~~~~~~~~Lt~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~-~~~~~~~~~~~~~~~I~i~~ 595 (1333)
+.+|.+..+.+|.|+..-.+.++..|.+|++.+.....++....+-++|+.+.++++++ .|.....|-....+.|+++|
T Consensus 463 l~aY~Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiDmEnmfdllkee~eVvd~P~a~pl~~~~G~i~fsn 542 (790)
T KOG0056|consen 463 LCAYRVTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFIDMENMFDLLKEEPEVVDLPGAPPLKVTQGKIEFSN 542 (790)
T ss_pred eeeeeeeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhhhHHHHHHHhhcCchhhcCCCCCCccccCCeEEEEE
Confidence 55565667789999988888888899999999999999999999999999999987762 22222233334567899999
Q ss_pred eEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC-------------eE
Q 000720 596 GEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------------KK 661 (1333)
Q Consensus 596 ~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g-------------~i 661 (1333)
++|+|+++ +|+|+| ||++++|+.+|++||+|+||||+++.+.+..+..+|.+ .++| +|
T Consensus 543 vtF~Y~p~-------k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI-~iDgqdIrnvt~~SLRs~I 614 (790)
T KOG0056|consen 543 VTFAYDPG-------KPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSI-TIDGQDIRNVTQSSLRSSI 614 (790)
T ss_pred eEEecCCC-------CceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceE-EEcCchHHHHHHHHHHHhc
Confidence 99999864 799999 99999999999999999999999999999999999986 8887 37
Q ss_pred EEEcCCCCCCCCCHHHHhccCCcCC-HHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHHccCCC
Q 000720 662 AYVPQSSWIQTGTIRENILFGKDMR-QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSD 740 (1333)
Q Consensus 662 ayv~Q~~~i~~~Tv~enI~~g~~~~-~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ 740 (1333)
|.||||..+||.||..||.++++-. .+...++.++.+..+.+-.+|+|..|.+||||-.||||+|||||+||++.++|.
T Consensus 615 GVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~ 694 (790)
T KOG0056|consen 615 GVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPS 694 (790)
T ss_pred CcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCc
Confidence 9999999999999999999998642 233445567777888899999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhcCCEEEEEeCCeEEEccChHHHHhhcchHHHHHHHh
Q 000720 741 VYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKA 820 (1333)
Q Consensus 741 illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~aD~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 820 (1333)
|++|||.|||||.++.+.| +.++..+.+++|.|+|.|+++.+-+||.|++++||+|+|.|+++|+...+++.+.++.+.
T Consensus 695 iIlLDEATSALDT~tER~I-QaaL~rlca~RTtIVvAHRLSTivnAD~ILvi~~G~IvErG~HeeLl~rdgG~Ya~MWq~ 773 (790)
T KOG0056|consen 695 IILLDEATSALDTNTERAI-QAALARLCANRTTIVVAHRLSTIVNADLILVISNGRIVERGRHEELLKRDGGAYADMWQA 773 (790)
T ss_pred EEEEcchhhhcCCccHHHH-HHHHHHHhcCCceEEEeeeehheecccEEEEEeCCeEeecCcHHHHHhccCCcHHHHHHH
Confidence 9999999999999997776 567778889999999999999999999999999999999999999998667888887755
Q ss_pred hh
Q 000720 821 HR 822 (1333)
Q Consensus 821 ~~ 822 (1333)
++
T Consensus 774 qq 775 (790)
T KOG0056|consen 774 QQ 775 (790)
T ss_pred HH
Confidence 43
No 45
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=1.4e-50 Score=462.44 Aligned_cols=525 Identities=21% Similarity=0.255 Sum_probs=409.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 263 TSLPQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGA 342 (1333)
Q Consensus 263 ~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~ 342 (1333)
.....+.+-.+++.++..+++..+-.+...++|+.+-+.-+-+=...+.+. -..+.+..+..+++..+.+.--.+..
T Consensus 11 ~~~~~a~l~~~r~a~~~v~lfS~~INiL~L~~~lyMLQVyDRVL~S~s~~T---Lv~Ltvlal~ly~~~glLd~iR~~~l 87 (580)
T COG4618 11 KNLLAAVLAANRRAFIGVGLFSAVINLLALTGPLYMLQVYDRVLPSRSVPT---LVMLTVLALGLYAFQGLLDAIRSRVL 87 (580)
T ss_pred CchhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhccCCCcch---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777778888888899988888899999988777665433332211 22333344444555666666666778
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccCCCC---hHHHHHHHHhhHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHhh
Q 000720 343 NRIGIRVRSALTVLIYKRSMAIKFAGPS---SGIIINMINVDVERIGDFFL-----YIHRIWLLPVQVFLALVILYKNLG 414 (1333)
Q Consensus 343 ~~~~~rir~~l~~~iy~K~L~ls~~~~~---~G~i~nlms~D~~~i~~~~~-----~~~~~w~~plqi~~~l~lL~~~lG 414 (1333)
.|+|.++-..|..-||.-+++.....+. ..+. -.|.+.+..|+. .+.+.--.|+=++++ |++.-.+|
T Consensus 88 ~Rig~~lD~~L~~~v~~a~~~~~l~~~~~g~~~Q~----LrDL~qvR~Fltg~g~~A~fDaPW~P~yl~v~-fl~Hp~lG 162 (580)
T COG4618 88 VRIGERLDRQLNGPVFAASFSAPLLRRGSGDGLQP----LRDLDQVRQFLTGTGLTAFFDAPWMPLYLAVI-FLFHPWLG 162 (580)
T ss_pred HHHHHHHHHHhccHHHHHHHhhHHhhcCCCccccc----hhhHHHHHHHHcCCCcchhcCCchHHHHHHHH-HHHHHHHH
Confidence 8999999999999999988644433332 2233 247888887753 344554467755554 56667899
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchHHHHHHHHHHHHHHHHHHHHHH
Q 000720 415 AAPAFAALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKY 494 (1333)
Q Consensus 415 ~~a~l~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~R~~~~~E~L~~Ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~ 494 (1333)
+.+++|.++++.+..+|-.++++ --++-.+..-+|....+..++|..+|+.+|..+...++..+....-+.+..+.
T Consensus 163 -~~a~~ga~iLv~la~ln~~~t~~---p~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~~~~~~~L~~~~~a 238 (580)
T COG4618 163 -LIALAGAIILVVLALLNERATRK---PLKEASEASIRANQLADATLRNAEVIEAMGMLGNLAKRWGRFNAAYLSAQERA 238 (580)
T ss_pred -HHHHHHHHHHHHHHHHHHHHhhc---cHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHh
Confidence 88888888888877777766543 34555677788899999999999999999999999888888776666655544
Q ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 000720 495 LYTCSAIAFLFWASPTL--VSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKE 572 (1333)
Q Consensus 495 ~~~~a~~~~~~~~~p~l--v~~~tF~~~~~~~~~Lt~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~ 572 (1333)
.........+.-..=.+ ..+...|+|..+++++|++.++..--+..-.-.|+........++..|+.|.+|++++|..
T Consensus 239 sd~~~~~~~~Sr~~Rm~lQs~iLg~GA~Lvi~ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~ 318 (580)
T COG4618 239 SDRNGAFGALSRALRMALQSAVLGLGAWLVIKGEITPGMMIAGSILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAE 318 (580)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcceeeEEcCcCCcchhhHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 43333222222121122 2344567788889999999999887777777789999999999999999999999999987
Q ss_pred cCCCCCCCCCCCCCCCccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCC
Q 000720 573 DNQKKPITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRIS 651 (1333)
Q Consensus 573 ~e~~~~~~~~~~~~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~ 651 (1333)
....+..-..| ..+..+.++++++.-|.. ++|++++ ||++++||-++|+||+|||||||.++|.|..+|.+
T Consensus 319 ~p~~~~~m~LP--~P~g~L~Ve~l~~~PPg~------~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~ 390 (580)
T COG4618 319 LPAAAERMPLP--APQGALSVERLTAAPPGQ------KKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTS 390 (580)
T ss_pred CccccCCCCCC--CCCceeeEeeeeecCCCC------CCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCC
Confidence 65333222333 346789999999976653 5799999 99999999999999999999999999999999999
Q ss_pred CcEEEECC-------------eEEEEcCCCCCCCCCHHHHhc-cCCcCCHHHHHHHHHHcccchHHHhhcCCCccccCCC
Q 000720 652 GAAIKVHG-------------KKAYVPQSSWIQTGTIRENIL-FGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGER 717 (1333)
Q Consensus 652 G~~i~~~g-------------~iayv~Q~~~i~~~Tv~enI~-~g~~~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~ 717 (1333)
|.+ +++| ++||.||+--+|+|||.|||. |+.+.|.++.-+..+..+.++-+..+|+|.+|.||+.
T Consensus 391 G~V-RLDga~l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~ 469 (580)
T COG4618 391 GSV-RLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEG 469 (580)
T ss_pred CcE-EecchhhhcCCHHHhccccCcCcccceecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCC
Confidence 997 7776 589999999999999999996 6667777665556666666677888999999999999
Q ss_pred CCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhcCCEEEEEeCCeE
Q 000720 718 GINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKI 797 (1333)
Q Consensus 718 g~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~aD~i~vl~~G~i 797 (1333)
|..|||||||||+||||+|.||.+++||||-|+||.+-...+.+.+..-..+|.|+|+|||+++.+..+|+|++|+||++
T Consensus 470 G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkilvl~~G~~ 549 (580)
T COG4618 470 GATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRI 549 (580)
T ss_pred CCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceeeeecCChH
Confidence 99999999999999999999999999999999999988777776655556689999999999999999999999999999
Q ss_pred EEccChHHHHh
Q 000720 798 EQSGKYEDLIA 808 (1333)
Q Consensus 798 ~~~g~~~~l~~ 808 (1333)
...|+.+|+++
T Consensus 550 ~~FG~r~eVLa 560 (580)
T COG4618 550 AAFGPREEVLA 560 (580)
T ss_pred HhcCCHHHHHH
Confidence 99999999886
No 46
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=1.5e-50 Score=505.06 Aligned_cols=433 Identities=17% Similarity=0.183 Sum_probs=345.2
Q ss_pred HHHHHHHHHHHHHhhHHHHHHhcccccccchhh-HH-HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000720 896 ILLCQVLFQALQMGSNYWIAWATDEKRKVSREQ-LI-GV--FIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVF 971 (1333)
Q Consensus 896 ~ll~~~l~~~~~~~~~~wl~~~~~~~~~~~~~~-~l-~v--y~~l~~~~~i~~~~~~~~~~~~~~~~s~~L~~~ll~~il 971 (1333)
.+++.++..++.++.++.+++.+|......... +. .+ ++++.++..++.+++.++....+.+...++|.+++++++
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll 97 (529)
T TIGR02868 18 AILLGALALGSAVALLGVSAWLISRAAEMPPVLYLSVAAVAVRAFGIGRAVFRYLERLVGHDAALRSLGRLRVRVYDRLA 97 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344445556666666777776654221111111 11 11 112344556677778888888999999999999999999
Q ss_pred cCccccccccCcchhHHHHhccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-HHHHHHH
Q 000720 972 RAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWY-QAYYITT 1050 (1333)
Q Consensus 972 ~ap~~fFd~tp~GrIlnRfs~Di~~vd~~l~~~l~~~~~~~~~~l~~ivv~~~~~~~l~lv~ipl~~~~~~~-~~~y~~~ 1050 (1333)
+.|.+||++.++|++++|+++|++.+++.+...+..++..++.+++.++++++.+|+++++++..++++.++ ..++.+.
T Consensus 98 ~~~~~~~~~~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~~~~~~~~~~~~~~~~ 177 (529)
T TIGR02868 98 RLALAGRRRFQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGSAAVAAIALLSVPAALVLAAGLLLAGFVAPLVSLRA 177 (529)
T ss_pred ccCccccccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999988776665554443 3444555
Q ss_pred HHHHHHHHhHhhchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 1051 ARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLI 1130 (1333)
Q Consensus 1051 srel~rl~~~~~spl~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~ll~~~~~~~~~~ 1130 (1333)
.++..+......+...+++.|+++|+++||+|+.|+++.+++.+..++..+..........+......++..+...++.+
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (529)
T TIGR02868 178 ARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRELLAAERRAARATGLGAAAQLLAAGLAVLGALW 257 (529)
T ss_pred cchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666777889999999999999999999999999999999999888887777666666555555555444333333
Q ss_pred HHH-hccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCcccCCCCCCCCCCCcccEE
Q 000720 1131 ILV-TLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIE 1209 (1333)
Q Consensus 1131 ~~~-~~~~~~~~~g~~gl~l~y~l~l~~~l~~~v~~~~~le~~~~SveRI~~~~~~p~E~~~~~~~~~~~~~wp~~G~I~ 1209 (1333)
++. ....+.+++|.+..++.|...+...+..+...+.++.+...|.+|+.++++.|+|.+.. +...+...+|..++|+
T Consensus 258 ~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~-~~~~~~~~~~~~~~I~ 336 (529)
T TIGR02868 258 AGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAKGPRPEG-VVPAAGALGLGKPTLE 336 (529)
T ss_pred HHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCC-CCCCCcccCCCCceEE
Confidence 322 23456788888888888888888888888888999999999999999999877653321 1111112344567899
Q ss_pred EEEEEEEECCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCCCChHHHhhcCeEec
Q 000720 1210 LENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIP 1289 (1333)
Q Consensus 1210 f~nVsf~Y~~~~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~i~l~~LRs~isiVp 1289 (1333)
|+||+|+|+++. ++|+|+||+|+|||++||||+||||||||+++|.|+|+|++|+|.+||+||+++ .+++|++|++||
T Consensus 337 ~~~vsf~Y~~~~-~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~-~~~lr~~i~~V~ 414 (529)
T TIGR02868 337 LRDLSFGYPGSP-PVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSL-QDELRRRISVFA 414 (529)
T ss_pred EEEEEEecCCCC-ceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhH-HHHHHhheEEEc
Confidence 999999997654 499999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred ccccccccchhhhcCCC-CCCCHHHHHHHHHhCCCCcccccCC
Q 000720 1290 QDPMLFQGTVRTNLDPL-EQHSDQEIWEVKISKLLTHKSYQCE 1331 (1333)
Q Consensus 1290 Qdp~LF~GTIR~NLdp~-~~~sDeeI~~aL~~~~L~~~~~~~~ 1331 (1333)
|||+||+|||||||..+ ++++|||+++|+++|++.+.+.+.|
T Consensus 415 Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp 457 (529)
T TIGR02868 415 QDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLP 457 (529)
T ss_pred cCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCc
Confidence 99999999999999986 4689999999999999998766554
No 47
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=4.4e-50 Score=514.54 Aligned_cols=432 Identities=19% Similarity=0.219 Sum_probs=354.1
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHhccccc-ccc---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 895 VILLCQVLFQALQMGSNYWIAWATDEKR-KVS---REQLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSV 970 (1333)
Q Consensus 895 ~~ll~~~l~~~~~~~~~~wl~~~~~~~~-~~~---~~~~l~vy~~l~~~~~i~~~~~~~~~~~~~~~~s~~L~~~ll~~i 970 (1333)
..+++.++.....+..+++.+...|.-. ..+ ....+.+++++.++..++.+++..++.+.+.+...++|+++++++
T Consensus 165 ~~~~~~~~~~l~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lr~~l~~~l 244 (711)
T TIGR00958 165 SAFVFLTLSSLGEMFIPFYTGRVIDTLGGDKGPPALASAIFFMCLLSIASSVSAGLRGGSFNYTMARINLRIREDLFRSL 244 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444556667777777887776554211 111 122344455566667788888889999999999999999999999
Q ss_pred hcCccccccccCcchhHHHHhccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 971 FRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQAYYITT 1050 (1333)
Q Consensus 971 l~ap~~fFd~tp~GrIlnRfs~Di~~vd~~l~~~l~~~~~~~~~~l~~ivv~~~~~~~l~lv~ipl~~~~~~~~~~y~~~ 1050 (1333)
+++|++||+++++|+++||+++|++.+++.+...+..++..++.+++.+++++..+|++.++++..+++..++..++.+.
T Consensus 245 l~~~~~~f~~~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~~~s~~l~l~~l~~~~l~~~~~~~~~~~ 324 (711)
T TIGR00958 245 LRQDLGFFDENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPRLTMVTLINLPLVFLAEKVFGKR 324 (711)
T ss_pred HcCCHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999888777777777777788888
Q ss_pred HHHHHHHHhHhhchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 1051 ARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLI 1130 (1333)
Q Consensus 1051 srel~rl~~~~~spl~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~ll~~~~~~~~~~ 1130 (1333)
.++..+...+..+...+++.|+++|+.+||+|+.|+++.+++.+..++..+.................++..+...++..
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ 404 (711)
T TIGR00958 325 YQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKALAYAGYLWTTSVLGMLIQVLVLY 404 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888999999999999999999999999999999999887766554433333322223333222222222
Q ss_pred HH-HhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCcccCCCCCCCCCCCcccEE
Q 000720 1131 IL-VTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIE 1209 (1333)
Q Consensus 1131 ~~-~~~~~~~~~~g~~gl~l~y~l~l~~~l~~~v~~~~~le~~~~SveRI~~~~~~p~E~~~~~~~~~~~~~wp~~G~I~ 1209 (1333)
++ .....+.+++|.+..++.|...+...+..+...+.++++...+.+|+.++++.+++.+.. . ....++..|.|+
T Consensus 405 ~g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~--~--~~~~~~~~~~I~ 480 (711)
T TIGR00958 405 YGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLT--G--TLAPLNLEGLIE 480 (711)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCC--C--CCCCCCCCCeEE
Confidence 22 223467788998888899999999999999999999999999999999999876654321 1 112234578999
Q ss_pred EEEEEEEECCC-CCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCCCChHHHhhcCeEe
Q 000720 1210 LENLLVQYNPT-LPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSII 1288 (1333)
Q Consensus 1210 f~nVsf~Y~~~-~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~i~l~~LRs~isiV 1288 (1333)
|+||+|+|+.+ .++||+|+||+|+|||++||||+||||||||+++|.|+|+|++|+|++||+|+++++.+++|++|++|
T Consensus 481 ~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v 560 (711)
T TIGR00958 481 FQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALV 560 (711)
T ss_pred EEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhceEE
Confidence 99999999643 24699999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccchhhhcCCC-CCCCHHHHHHHHHhCCCCcccccC
Q 000720 1289 PQDPMLFQGTVRTNLDPL-EQHSDQEIWEVKISKLLTHKSYQC 1330 (1333)
Q Consensus 1289 pQdp~LF~GTIR~NLdp~-~~~sDeeI~~aL~~~~L~~~~~~~ 1330 (1333)
||||++|+|||||||..+ ++++|||+++|++++++.+...+.
T Consensus 561 ~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~l 603 (711)
T TIGR00958 561 GQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEF 603 (711)
T ss_pred ecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhC
Confidence 999999999999999865 568999999999999998766544
No 48
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=2.4e-49 Score=497.67 Aligned_cols=429 Identities=24% Similarity=0.317 Sum_probs=355.5
Q ss_pred HHHHHHHHHHHHhhHHHHHHhccccc-c-cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 000720 897 LLCQVLFQALQMGSNYWIAWATDEKR-K-VSREQLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAP 974 (1333)
Q Consensus 897 ll~~~l~~~~~~~~~~wl~~~~~~~~-~-~~~~~~l~vy~~l~~~~~i~~~~~~~~~~~~~~~~s~~L~~~ll~~il~ap 974 (1333)
+++.++...+....++++.+..+... . .....+...++++.++..++.+...++..+.+.+...++|.++++++++.|
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~ 99 (567)
T COG1132 20 ILLLLLSALLSLLLPLLIGRIIDALLADLGELLELLLLLLLLALLGGVLRALQSYLGSRLGQKIVADLRRDLFEKLLRLP 99 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 33445556666667777665543222 1 112234444555555667777777788888889999999999999999999
Q ss_pred cccccccCcchhHHHHhccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 975 ISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQAYYITTAREL 1054 (1333)
Q Consensus 975 ~~fFd~tp~GrIlnRfs~Di~~vd~~l~~~l~~~~~~~~~~l~~ivv~~~~~~~l~lv~ipl~~~~~~~~~~y~~~srel 1054 (1333)
++||+++++|++++|+++|++.++..+......+...++.+++.+++++..+|.+.++++...+++.+...++.++.++.
T Consensus 100 ~~~~~~~~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~ 179 (567)
T COG1132 100 LSFFDKAKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSLLARKSRKL 179 (567)
T ss_pred HHHhCcCCcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998866666678899999999999999999888887777777777787777899
Q ss_pred HHHHhHhhchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 000720 1055 ARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLIILV- 1133 (1333)
Q Consensus 1055 ~rl~~~~~spl~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~ll~~~~~~~~~~~~~- 1133 (1333)
.+......+.+.+.+.|+++|+++||+|+.++...+++.+..+...+...........+.....++..+....+..++.
T Consensus 180 ~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (567)
T COG1132 180 SRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLLLSSLGTVLVLALGGF 259 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999988888887777666666666655555555554444333322
Q ss_pred hccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCcccCCCCCCCCCCCcccEEEEEE
Q 000720 1134 TLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELENL 1213 (1333)
Q Consensus 1134 ~~~~~~~~~g~~gl~l~y~l~l~~~l~~~v~~~~~le~~~~SveRI~~~~~~p~E~~~~~~~~~~~~~wp~~G~I~f~nV 1213 (1333)
....+.++.|....++.|...+...+..+...+..++....|.||+.++++.+++... ... +..+..|+|+|+||
T Consensus 260 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~---~~~--~~~~~~~~I~f~~v 334 (567)
T COG1132 260 LVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVED---PPD--PLKDTIGSIEFENV 334 (567)
T ss_pred HHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccC---CCC--CCCCCCCeEEEEEE
Confidence 2344557888888999999999999999999999999999999999999987654221 111 13455789999999
Q ss_pred EEEECCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCCCChHHHhhcCeEeccccc
Q 000720 1214 LVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPM 1293 (1333)
Q Consensus 1214 sf~Y~~~~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~i~l~~LRs~isiVpQdp~ 1293 (1333)
+|+|+++. +||+|+||+|+|||++||||||||||||++++|+|+|||++|+|+|||+||+++++++||++|++|||||+
T Consensus 335 sf~y~~~~-~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~ 413 (567)
T COG1132 335 SFSYPGKK-PVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPL 413 (567)
T ss_pred EEEcCCCC-ccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEEcccce
Confidence 99998644 59999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchhhhcCCCCC-CCHHHHHHHHHhCCCCcccccCC
Q 000720 1294 LFQGTVRTNLDPLEQ-HSDQEIWEVKISKLLTHKSYQCE 1331 (1333)
Q Consensus 1294 LF~GTIR~NLdp~~~-~sDeeI~~aL~~~~L~~~~~~~~ 1331 (1333)
||+||||+||+++++ +|||||++|++++++.|...+.|
T Consensus 414 LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp 452 (567)
T COG1132 414 LFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLP 452 (567)
T ss_pred eecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCc
Confidence 999999999999865 89999999999999998766654
No 49
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=7.8e-49 Score=503.36 Aligned_cols=431 Identities=18% Similarity=0.175 Sum_probs=355.5
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHhccccc-ccch---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 895 VILLCQVLFQALQMGSNYWIAWATDEKR-KVSR---EQLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSV 970 (1333)
Q Consensus 895 ~~ll~~~l~~~~~~~~~~wl~~~~~~~~-~~~~---~~~l~vy~~l~~~~~i~~~~~~~~~~~~~~~~s~~L~~~ll~~i 970 (1333)
..+++.++...+.++.++.++...|... ..+. ..+..+++++.++..++.+++.++....+.+...+++.++++++
T Consensus 140 ~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l 219 (686)
T TIGR03797 140 AILAMGLLGTLLGMLVPIATGILIGTAIPDADRSLLVQIALALLAAAVGAAAFQLAQSLAVLRLETRMDASLQAAVWDRL 219 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556666677777777766554221 1111 22334455556667788888999999999999999999999999
Q ss_pred hcCccccccccCcchhHHHHhccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 971 FRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQAYYITT 1050 (1333)
Q Consensus 971 l~ap~~fFd~tp~GrIlnRfs~Di~~vd~~l~~~l~~~~~~~~~~l~~ivv~~~~~~~l~lv~ipl~~~~~~~~~~y~~~ 1050 (1333)
++.|++||++.++|++++|++ |++.+++.+...+...+...+..++.+++++..+|+++++++.++++++.+..++.+.
T Consensus 220 l~~~~~~~~~~~~g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~ 298 (686)
T TIGR03797 220 LRLPVSFFRQYSTGDLASRAM-GISQIRRILSGSTLTTLLSGIFALLNLGLMFYYSWKLALVAVALALVAIAVTLVLGLL 298 (686)
T ss_pred HcCCHHHHCCCChhHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999997 8999999998888787777777888888899999999888777666666666666666
Q ss_pred HHHHHHHHhHhhchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 1051 ARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLI 1130 (1333)
Q Consensus 1051 srel~rl~~~~~spl~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~ll~~~~~~~~~~ 1130 (1333)
.+...+......+...+++.|+++|+.|||+|+.|+++.+++.+..++..+..+.....+.|......++..+...++.+
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~ 378 (686)
T TIGR03797 299 QVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQRIENLLTVFNAVLPVLTSAALFA 378 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666667778899999999999999999999999999999999999988888888888877777666554444433
Q ss_pred HHHh-ccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCcccCCCCCCCCCCCcccEE
Q 000720 1131 ILVT-LPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIE 1209 (1333)
Q Consensus 1131 ~~~~-~~~~~~~~g~~gl~l~y~l~l~~~l~~~v~~~~~le~~~~SveRI~~~~~~p~E~~~~~~~~~~~~~wp~~G~I~ 1209 (1333)
++.. ...+.++.|.+-.+..+...+..++..+...+.+++....+.+|+.++++.|+|.+. +..+ ..+..|.|+
T Consensus 379 ~g~~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~---~~~~--~~~~~~~I~ 453 (686)
T TIGR03797 379 AAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVDE---AKTD--PGKLSGAIE 453 (686)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc---CcCC--CCCCCceEE
Confidence 3332 345678888877778888888888888999999999999999999999987766431 1111 123457899
Q ss_pred EEEEEEEECCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCCCChHHHhhcCeEec
Q 000720 1210 LENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIP 1289 (1333)
Q Consensus 1210 f~nVsf~Y~~~~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~i~l~~LRs~isiVp 1289 (1333)
|+||+|+|+++.+++|+|+||+|+|||++||||+||||||||+++|.|+|+|++|+|+|||+|+++++.+++|++|++||
T Consensus 454 ~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~ 533 (686)
T TIGR03797 454 VDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVL 533 (686)
T ss_pred EEEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEEEc
Confidence 99999999766667999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccchhhhcCCCCCCCHHHHHHHHHhCCCCcccccCC
Q 000720 1290 QDPMLFQGTVRTNLDPLEQHSDQEIWEVKISKLLTHKSYQCE 1331 (1333)
Q Consensus 1290 Qdp~LF~GTIR~NLdp~~~~sDeeI~~aL~~~~L~~~~~~~~ 1331 (1333)
|||.||+|||||||..+++++|||+|+|++.+++.+.+.+.|
T Consensus 534 Q~~~lf~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp 575 (686)
T TIGR03797 534 QNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMP 575 (686)
T ss_pred cCCccCcccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhcc
Confidence 999999999999999877799999999999999998766544
No 50
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=6.4e-49 Score=496.54 Aligned_cols=446 Identities=15% Similarity=0.142 Sum_probs=345.4
Q ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHHHHhhHHHHHHhcccc--cccc---hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 879 VYSAFITLVYKGALVPVILLCQVLFQALQMGSNYWIAWATDEK--RKVS---REQLIGVFIFLSGGSSFFILGRAVLLAT 953 (1333)
Q Consensus 879 ~y~~y~~~~~~~~~~~~~ll~~~l~~~~~~~~~~wl~~~~~~~--~~~~---~~~~l~vy~~l~~~~~i~~~~~~~~~~~ 953 (1333)
.++.|++...+ .+.+.+++.++..++....++.+++..|.. +..+ ...++.+++++.++..++.+.+.++...
T Consensus 12 ~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (588)
T PRK11174 12 WLKQQSKPAKR--WLNLSILLGFLSGLLLIAQAWLLATILQALIIENIPREALLPPFILLILLFVLRALLAWLRERVGFK 89 (588)
T ss_pred HHHHHhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555554322 222334444556666666777666555421 1111 1223344555556677778888888899
Q ss_pred HHHHHHHHHHHHHHHHHhcCccccccccCcchhHHHHhccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 000720 954 IAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLF 1033 (1333)
Q Consensus 954 ~~~~~s~~L~~~ll~~il~ap~~fFd~tp~GrIlnRfs~Di~~vd~~l~~~l~~~~~~~~~~l~~ivv~~~~~~~l~lv~ 1033 (1333)
.+.+...++|.++++++++.|++||++.++|++++|+++|++.+++.+...+..++..++..++.++++++.+|++++++
T Consensus 90 ~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~ 169 (588)
T PRK11174 90 AGQHIRQQIRQQVLDKLQQLGPAWIQGKPAGSWATLVLEQVEDMHDFYARYLPQMALAVLVPLLILIAVFPINWAAGLIL 169 (588)
T ss_pred HHHHHHHHHHHHHHHHHHhcCchhhccCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 1034 LVILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWL 1113 (1333)
Q Consensus 1034 ipl~~~~~~~~~~y~~~srel~rl~~~~~spl~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl 1113 (1333)
+.++++..++..++.+..++..+......+...+++.|+++|+.+||+|++|+++.+++.+..++..+..........+.
T Consensus 170 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (588)
T PRK11174 170 LGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRTMEVLRMAFLS 249 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777788888778888999999999999999999999999999999999998888777666655555
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCChHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhc
Q 000720 1114 CLRINLLFNFAFFLVLIILVTLPRSAIDPSLA---------GLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTN 1184 (1333)
Q Consensus 1114 ~~rl~ll~~~~~~~~~~~~~~~~~~~~~~g~~---------gl~l~y~l~l~~~l~~~v~~~~~le~~~~SveRI~~~~~ 1184 (1333)
.....++..+...++++++.....+.++.|.. -+++.++..+..++..+...+.++.....|.+|+.++++
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~ 329 (588)
T PRK11174 250 SAVLEFFASISIALVAVYFGFSYLGELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVGAAESLVTFLE 329 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 55555554443322222211111233333321 122244455566777777888889999999999999998
Q ss_pred CCCCCCcccCCCCCCCCCCCcccEEEEEEEEEECCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCC
Q 000720 1185 IPSEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGG 1264 (1333)
Q Consensus 1185 ~p~E~~~~~~~~~~~~~wp~~G~I~f~nVsf~Y~~~~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G 1264 (1333)
.|++++. ++..+ ...+..++|+|+||+|.|.++ ++||+|+||+|+|||++||||+||||||||+++|.|+| |++|
T Consensus 330 ~~~~~~~--~~~~~-~~~~~~~~i~~~~vsf~~~~~-~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G 404 (588)
T PRK11174 330 TPLAHPQ--QGEKE-LASNDPVTIEAEDLEILSPDG-KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQG 404 (588)
T ss_pred CCCcccC--CCccc-cCCCCCceEEEEeeEEeccCC-CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCc
Confidence 7765321 11111 111234689999999988665 45999999999999999999999999999999999999 9999
Q ss_pred eEEEcCEeCCCCChHHHhhcCeEecccccccccchhhhcCCC-CCCCHHHHHHHHHhCCCCcccccCC
Q 000720 1265 RILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPL-EQHSDQEIWEVKISKLLTHKSYQCE 1331 (1333)
Q Consensus 1265 ~I~IDGvdI~~i~l~~LRs~isiVpQdp~LF~GTIR~NLdp~-~~~sDeeI~~aL~~~~L~~~~~~~~ 1331 (1333)
+|++||+|+++++.+++|++|++|||||+||+|||||||..+ ++++|||+++|+++|++.+.+.+.|
T Consensus 405 ~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp 472 (588)
T PRK11174 405 SLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLP 472 (588)
T ss_pred EEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcc
Confidence 999999999999999999999999999999999999999987 4699999999999999988766553
No 51
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=5.1e-49 Score=506.76 Aligned_cols=448 Identities=18% Similarity=0.205 Sum_probs=359.5
Q ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhHHHHHHhccccc-ccch---hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 877 WTVYSAFITLVYKGALVPVILLCQVLFQALQMGSNYWIAWATDEKR-KVSR---EQLIGVFIFLSGGSSFFILGRAVLLA 952 (1333)
Q Consensus 877 ~~~y~~y~~~~~~~~~~~~~ll~~~l~~~~~~~~~~wl~~~~~~~~-~~~~---~~~l~vy~~l~~~~~i~~~~~~~~~~ 952 (1333)
+..++.|++...+ .+..++++.++..++.++.+++++...|... .... ..+..+++++.++..++.+++.++..
T Consensus 144 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~p~~~~~iiD~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (708)
T TIGR01193 144 LLKFIPLITRQKK--LIVNIVIAAIIVTLISIAGSYYLQKIIDTYIPHKMMGTLGIISIGLIIAYIIQQILSYIQIFLLN 221 (708)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666654322 2233444556667777788888887665321 1111 12233344455566778888999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCccccccccCcchhHHHHhccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 000720 953 TIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPL 1032 (1333)
Q Consensus 953 ~~~~~~s~~L~~~ll~~il~ap~~fFd~tp~GrIlnRfs~Di~~vd~~l~~~l~~~~~~~~~~l~~ivv~~~~~~~l~lv 1032 (1333)
..+.+...+++.++++++++.|++||+++++|++++|++ |...+.+.+...+...+..++.+++.++++++.+|+++++
T Consensus 222 ~~~~~~~~~l~~~~~~~ll~l~~~~f~~~~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li 300 (708)
T TIGR01193 222 VLGQRLSIDIILSYIKHLFELPMSFFSTRRTGEIVSRFT-DASSIIDALASTILSLFLDMWILVIVGLFLVRQNMLLFLL 300 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHhCCCchhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 999999999999999999999999999999999999998 8999988888777777777778888888889999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 1033 FLVILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEW 1112 (1333)
Q Consensus 1033 ~ipl~~~~~~~~~~y~~~srel~rl~~~~~spl~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~w 1112 (1333)
++..++++..+...+.+..++..+......+...+++.|+++|+.|||+|+.|+++.+++.+..++..+..+.......+
T Consensus 301 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (708)
T TIGR01193 301 SLLSIPVYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKADQG 380 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777778888888888888899999999999999999999999999999999988888777766555555
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCc
Q 000720 1113 LCLRINLLFNFAFFLVLIIL-VTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPL 1191 (1333)
Q Consensus 1113 l~~rl~ll~~~~~~~~~~~~-~~~~~~~~~~g~~gl~l~y~l~l~~~l~~~v~~~~~le~~~~SveRI~~~~~~p~E~~~ 1191 (1333)
......++..+...++++++ .....+.+++|.+..+..+...+..++..+...+.+++....+++|+.++++.|+|.+.
T Consensus 381 ~~~~~~~~~~~~~i~il~~g~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~ 460 (708)
T TIGR01193 381 QQAIKAVTKLILNVVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSEFIN 460 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccc
Confidence 44444444333322222222 22346778898888888888888889999999999999999999999999988877532
Q ss_pred ccCCCCCCCCCCCcccEEEEEEEEEECCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCE
Q 000720 1192 VIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGV 1271 (1333)
Q Consensus 1192 ~~~~~~~~~~wp~~G~I~f~nVsf~Y~~~~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGv 1271 (1333)
. ......++..|.|+|+||+|+|+++ +++|+|+||+|+|||+|||||+||||||||+++|.|+|+|++|+|+|||+
T Consensus 461 ~---~~~~~~~~~~~~I~~~~vsf~y~~~-~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~ 536 (708)
T TIGR01193 461 K---KKRTELNNLNGDIVINDVSYSYGYG-SNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGF 536 (708)
T ss_pred c---ccccCCCCCCCcEEEEEEEEEcCCC-CcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCE
Confidence 1 1112234557899999999999754 45999999999999999999999999999999999999999999999999
Q ss_pred eCCCCChHHHhhcCeEecccccccccchhhhcCCC--CCCCHHHHHHHHHhCCCCcccccCC
Q 000720 1272 DISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPL--EQHSDQEIWEVKISKLLTHKSYQCE 1331 (1333)
Q Consensus 1272 dI~~i~l~~LRs~isiVpQdp~LF~GTIR~NLdp~--~~~sDeeI~~aL~~~~L~~~~~~~~ 1331 (1333)
|+++++.+++|++|++|||||+||+|||||||..+ .+++|||+++|++++++.+.+.+.|
T Consensus 537 ~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp 598 (708)
T TIGR01193 537 SLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMP 598 (708)
T ss_pred EHHHcCHHHHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcc
Confidence 99999999999999999999999999999999876 4689999999999999987665543
No 52
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=100.00 E-value=6.4e-48 Score=488.59 Aligned_cols=502 Identities=17% Similarity=0.167 Sum_probs=363.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 276 SLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSALTV 355 (1333)
Q Consensus 276 ~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~~~~rir~~l~~ 355 (1333)
.++...++.++.+.+....|++...+++.+.+.+...-....+.+++.+++.. +......|...++..++|..+..
T Consensus 97 ~l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~~~~~f~~~l~~~~l~~~~~~----~~~~~~~~~~~~~~~~~r~~l~~ 172 (659)
T TIGR00954 97 LLILIAFLLVSRTYLSVYVATLDGQIESSIVRRSPRNFAWILFKWFLIAPPAS----FINSAIKYLLKELKLRFRVRLTR 172 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677778888888999999999999987754321000010111222222222 33333444466667777777777
Q ss_pred HHHHHHhcccc------CCCChHHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 000720 356 LIYKRSMAIKF------AGPSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFV 428 (1333)
Q Consensus 356 ~iy~K~L~ls~------~~~~~G~i~nlms~D~~~i~~~~~-~~~~~w~~plqi~~~l~lL~~~lG~~a~l~gl~~~~~~ 428 (1333)
.++++.+.--. .+..+|++.+.+++|++.+.+... .+..+...++.++.+++.|+..++|..++..++.+++.
T Consensus 173 ~l~~~~~~~~~~~~~~~~d~~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~L~~~~~~~l~l~~l~~~~l~ 252 (659)
T TIGR00954 173 YLYSKYLSGFTFYKVSNLDSRIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKLLTALGSVGPAGLFAYLFAT 252 (659)
T ss_pred HHHHHHhCCCceEEeccCCCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 77766654311 112479999999999999988764 45566667778887888888778844555555556666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 429 MVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIAFLFWAS 508 (1333)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~D~R~~~~~E~L~~Ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~a~~~~~~~~~ 508 (1333)
+.+...+.+...+..++..+..++-....+|.++|+++||+|+-|+...++..+.=++-.+..++.....+....+....
T Consensus 253 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i 332 (659)
T TIGR00954 253 GVVLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEHLNLIIKFRFSYGFLDNIV 332 (659)
T ss_pred HHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 66777788888888888888888889999999999999999999998877776643333333333333333322222211
Q ss_pred H----HHHHHHHHHHHHHh--c---CCCCHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Q 000720 509 P----TLVSVITFGVCILL--K---TPLTSGAVLSA----LATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQ 575 (1333)
Q Consensus 509 p----~lv~~~tF~~~~~~--~---~~Lt~~~vft~----lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~ 575 (1333)
. ..+..+..+..++. | +.+|.+..+.. ..++..+..|+..+...+..+.+++++.+||.++++.+++
T Consensus 333 ~~~~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i~~~~~~~~Ri~~ll~~~~~ 412 (659)
T TIGR00954 333 AKYTWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDMTRLAGFTARVDTLLQVLDD 412 (659)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 11212222232332 1 56887765442 3346677899999999999999999999999999975431
Q ss_pred -C-----CC-CCC-----------------CCCCCCCccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEEC
Q 000720 576 -K-----KP-ITE-----------------PTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCG 630 (1333)
Q Consensus 576 -~-----~~-~~~-----------------~~~~~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG 630 (1333)
. +. ... .........|+++|++|+|+++ .+.+++ |+++++||+++|+|
T Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~~-------~~il~~isl~i~~Ge~~~IvG 485 (659)
T TIGR00954 413 VKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPNG-------DVLIESLSFEVPSGNHLLICG 485 (659)
T ss_pred HhcccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCCC-------CeeeecceEEECCCCEEEEEC
Confidence 0 00 000 0000123469999999999743 368999 99999999999999
Q ss_pred CCCCChhHHHHHHhCCCcCCCCcEEEEC--CeEEEEcCCCCCCCCCHHHHhccCCc--------CCHHHHHHHHHHcccc
Q 000720 631 SVGSGKSSLLSSILGEIPRISGAAIKVH--GKKAYVPQSSWIQTGTIRENILFGKD--------MRQSFYEEVLEGCALN 700 (1333)
Q Consensus 631 ~~GsGKSTLl~~ilG~~~~~~G~~i~~~--g~iayv~Q~~~i~~~Tv~enI~~g~~--------~~~~~~~~v~~~~~l~ 700 (1333)
|||||||||+++|+|+++|.+|++ .++ .+++|+||+|+++++|++|||.++.. ..++..+++++.+++.
T Consensus 486 ~nGsGKSTLl~lL~Gl~~~~~G~i-~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~ 564 (659)
T TIGR00954 486 PNGCGKSSLFRILGELWPVYGGRL-TKPAKGKLFYVPQRPYMTLGTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLT 564 (659)
T ss_pred CCCCCHHHHHHHHhCCCCCCCCeE-eecCCCcEEEECCCCCCCCcCHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCH
Confidence 999999999999999999999986 554 46999999999999999999998742 2344556778888887
Q ss_pred hHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCch
Q 000720 701 QDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQL 780 (1333)
Q Consensus 701 ~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~ 780 (1333)
+.++. +.|.+|..+ .+.+||||||||++||||++++|+++|||||||+||+++.+.+.+.+ +. .++|+|++||++
T Consensus 565 ~~~~~-~~g~~~~~~-~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l-~~--~~~tvI~isH~~ 639 (659)
T TIGR00954 565 HILER-EGGWSAVQD-WMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLC-RE--FGITLFSVSHRK 639 (659)
T ss_pred HHHhh-cCCcccccc-cccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHH-HH--cCCEEEEEeCch
Confidence 66655 778888765 57899999999999999999999999999999999999988776643 32 389999999999
Q ss_pred hhhhcCCEEEEEeC
Q 000720 781 EFLDAADLVLVMKD 794 (1333)
Q Consensus 781 ~~l~~aD~i~vl~~ 794 (1333)
+.++.||++++|++
T Consensus 640 ~~~~~~d~il~l~~ 653 (659)
T TIGR00954 640 SLWKYHEYLLYMDG 653 (659)
T ss_pred HHHHhCCEEEEEeC
Confidence 99999999999973
No 53
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=1.7e-48 Score=502.40 Aligned_cols=452 Identities=16% Similarity=0.151 Sum_probs=367.3
Q ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhHHHHHHhccccc-ccc---hhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 877 WTVYSAFITLVYKGALVPVILLCQVLFQALQMGSNYWIAWATDEKR-KVS---REQLIGVFIFLSGGSSFFILGRAVLLA 952 (1333)
Q Consensus 877 ~~~y~~y~~~~~~~~~~~~~ll~~~l~~~~~~~~~~wl~~~~~~~~-~~~---~~~~l~vy~~l~~~~~i~~~~~~~~~~ 952 (1333)
++.++.+++... ......+++.++..++.++.++.++...|... ... ...+...++++.++..++.+++.++..
T Consensus 142 ~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (710)
T TIGR03796 142 LRALWRRLRGSR--GALLYLLLAGLLLVLPGLVIPAFSQIFVDEILVQGRQDWLRPLLLGMGLTALLQGVLTWLQLYYLR 219 (710)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555322 12223444455666667777777776554211 111 122334455556667788888999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCccccccccCcchhHHHHhccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 000720 953 TIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPL 1032 (1333)
Q Consensus 953 ~~~~~~s~~L~~~ll~~il~ap~~fFd~tp~GrIlnRfs~Di~~vd~~l~~~l~~~~~~~~~~l~~ivv~~~~~~~l~lv 1032 (1333)
..+.+...+++.++++++++.|++||++.++|++++|+++| ..+.+.+...+..++..++.+++.+++++..+|+++++
T Consensus 220 ~~~~~~~~~l~~~~~~~ll~l~~~~~~~~~~g~~~~r~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li 298 (710)
T TIGR03796 220 RLQIKLAVGMSARFLWHILRLPVRFFAQRHAGDIASRVQLN-DQVAEFLSGQLATTALDAVMLVFYALLMLLYDPVLTLI 298 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHcCCcccHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998 67888888888888889999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 1033 FLVILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEW 1112 (1333)
Q Consensus 1033 ~ipl~~~~~~~~~~y~~~srel~rl~~~~~spl~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~w 1112 (1333)
.+.+++++.++..++.+..++..+......+...+++.|+++|+.+||+++.|+.+.+++.+..++..+..........+
T Consensus 299 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (710)
T TIGR03796 299 GIAFAAINVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELGVLTQI 378 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88777777777777777777777777788889999999999999999999999999999999998888888777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-hccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCc
Q 000720 1113 LCLRINLLFNFAFFLVLIILV-TLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPL 1191 (1333)
Q Consensus 1113 l~~rl~ll~~~~~~~~~~~~~-~~~~~~~~~g~~gl~l~y~l~l~~~l~~~v~~~~~le~~~~SveRI~~~~~~p~E~~~ 1191 (1333)
......++..+...+++++++ ....+.++.|.+..+..+...+..++..+...+.++.....+++|+.++++.|+|.+.
T Consensus 379 ~~~~~~~i~~~~~~~il~~g~~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~ 458 (710)
T TIGR03796 379 LGVLPTLLTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPLL 458 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccc
Confidence 777666666554444433332 2345778888888888888888888999999999999999999999999988776532
Q ss_pred ccCC--C-CCCCCCCCcccEEEEEEEEEECCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEE
Q 000720 1192 VIKN--S-RPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILI 1268 (1333)
Q Consensus 1192 ~~~~--~-~~~~~wp~~G~I~f~nVsf~Y~~~~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~I 1268 (1333)
.... . ...+.++..|.|+|+||+|+|+++.+++|+|+||+|+|||+|||||+||||||||+++|.|+|+|++|+|.+
T Consensus 459 ~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~i 538 (710)
T TIGR03796 459 EEEEAPAAGSEPSPRLSGYVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILF 538 (710)
T ss_pred ccccccccccccCCCCCCeEEEEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEE
Confidence 1100 0 011113456899999999999876667999999999999999999999999999999999999999999999
Q ss_pred cCEeCCCCChHHHhhcCeEecccccccccchhhhcCCCC-CCCHHHHHHHHHhCCCCcccccCC
Q 000720 1269 DGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLE-QHSDQEIWEVKISKLLTHKSYQCE 1331 (1333)
Q Consensus 1269 DGvdI~~i~l~~LRs~isiVpQdp~LF~GTIR~NLdp~~-~~sDeeI~~aL~~~~L~~~~~~~~ 1331 (1333)
||+|+++++.+++|++|++|||||+||+|||||||..++ +++|+++++|++++++.+.+.+.|
T Consensus 539 dg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp 602 (710)
T TIGR03796 539 DGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRP 602 (710)
T ss_pred CCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCc
Confidence 999999999999999999999999999999999998764 689999999999999988766543
No 54
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=3.4e-48 Score=490.07 Aligned_cols=429 Identities=20% Similarity=0.268 Sum_probs=342.8
Q ss_pred HHHHHHHHHHHHHhhHHHHHHhccccc-ccc--hhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 896 ILLCQVLFQALQMGSNYWIAWATDEKR-KVS--REQ---LIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITS 969 (1333)
Q Consensus 896 ~ll~~~l~~~~~~~~~~wl~~~~~~~~-~~~--~~~---~l~vy~~l~~~~~i~~~~~~~~~~~~~~~~s~~L~~~ll~~ 969 (1333)
.+++.++...+....++++.+..|... ..+ ... ++.+++++.++..++.+.+.++....+.+...++|.+++++
T Consensus 28 ~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ 107 (592)
T PRK10790 28 AVLMLWVAAAAEVSGPLLISYFIDNMVAKGNLPLGLVAGLAAAYVGLQLLAAGLHYAQSLLFNRAAVGVVQQLRTDVMDA 107 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666677777777776664221 111 111 12224444455666777888888899999999999999999
Q ss_pred HhcCccccccccCcchhHHHHhccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 000720 970 VFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQAYYIT 1049 (1333)
Q Consensus 970 il~ap~~fFd~tp~GrIlnRfs~Di~~vd~~l~~~l~~~~~~~~~~l~~ivv~~~~~~~l~lv~ipl~~~~~~~~~~y~~ 1049 (1333)
++++|++||++.++|++++|+++|++.+++.+...+..++..++.+++.++++++.+|++.++++..+++...+...+.+
T Consensus 108 l~~~~~~~~~~~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~i~~~~~~~~~~ 187 (592)
T PRK10790 108 ALRQPLSAFDTQPVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFSLDWRMALVAIMIFPAVLVVMVIYQR 187 (592)
T ss_pred HHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999887665555544444555555
Q ss_pred HHHHHHHHHhHhhchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q 000720 1050 TARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWL-CLRINLLFNFAFFLV 1128 (1333)
Q Consensus 1050 ~srel~rl~~~~~spl~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl-~~rl~ll~~~~~~~~ 1128 (1333)
..+...+......+...+++.|+++|+.+||+|+.|+++.+++.+..++..+..+.......+. .....++..+...++
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (592)
T PRK10790 188 YSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTLRLDGFLLRPLLSLFSALILCGL 267 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666677888999999999999999999999999999988887777665554444332 233334333322222
Q ss_pred HHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCcccCCCCCCCCCCCcccE
Q 000720 1129 LIILVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKI 1208 (1333)
Q Consensus 1129 ~~~~~~~~~~~~~~g~~gl~l~y~l~l~~~l~~~v~~~~~le~~~~SveRI~~~~~~p~E~~~~~~~~~~~~~wp~~G~I 1208 (1333)
.+.......+.++.|.+..++.|...+..++..+...+.++++...|.+|+.++++.+++++. .. ..++..|+|
T Consensus 268 ~~~~~~~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~---~~---~~~~~~~~i 341 (592)
T PRK10790 268 LMLFGFSASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGPRQQYG---ND---DRPLQSGRI 341 (592)
T ss_pred HHHHHHHHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCC---CC---ccCCCCCeE
Confidence 222222346678888888888899999999999999999999999999999999986654321 11 123345789
Q ss_pred EEEEEEEEECCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCCCChHHHhhcCeEe
Q 000720 1209 ELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSII 1288 (1333)
Q Consensus 1209 ~f~nVsf~Y~~~~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~i~l~~LRs~isiV 1288 (1333)
+|+||+|+|+++ +++|+|+||+|+|||++||||+||||||||+++|.|+|+|++|+|.+||+|+++++.+++|++|++|
T Consensus 342 ~~~~v~f~y~~~-~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v 420 (592)
T PRK10790 342 DIDNVSFAYRDD-NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMV 420 (592)
T ss_pred EEEEEEEEeCCC-CceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEE
Confidence 999999999754 4599999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccchhhhcCCCCCCCHHHHHHHHHhCCCCcccccCC
Q 000720 1289 PQDPMLFQGTVRTNLDPLEQHSDQEIWEVKISKLLTHKSYQCE 1331 (1333)
Q Consensus 1289 pQdp~LF~GTIR~NLdp~~~~sDeeI~~aL~~~~L~~~~~~~~ 1331 (1333)
||||+||+||||+||.++++++|+|+++|++++|+.+.+...|
T Consensus 421 ~Q~~~lF~~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp 463 (592)
T PRK10790 421 QQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLP 463 (592)
T ss_pred ccCCccccchHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhcc
Confidence 9999999999999999988899999999999999998766543
No 55
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=6.8e-48 Score=495.31 Aligned_cols=448 Identities=18% Similarity=0.170 Sum_probs=360.4
Q ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhHHHHHHhcccc-cccch---hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 877 WTVYSAFITLVYKGALVPVILLCQVLFQALQMGSNYWIAWATDEK-RKVSR---EQLIGVFIFLSGGSSFFILGRAVLLA 952 (1333)
Q Consensus 877 ~~~y~~y~~~~~~~~~~~~~ll~~~l~~~~~~~~~~wl~~~~~~~-~~~~~---~~~l~vy~~l~~~~~i~~~~~~~~~~ 952 (1333)
+..++.+++.. +..+...+++.++..++..+.++.++...|.. +..+. ..+..+++++.++..++.+++.++..
T Consensus 135 ~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~l~~p~~~~~iiD~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (694)
T TIGR03375 135 KHWFWSTLKES--WPLYRDVLIASLLINLLALASPLFVMNVYDRVVPNQAFETLWVLAIGVALAIVFDFVLKTLRSYFLD 212 (694)
T ss_pred chHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33345555432 22223344455666667777787777666432 11111 12223344445566778888999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCccccccccCcchhHHHHhccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 000720 953 TIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPL 1032 (1333)
Q Consensus 953 ~~~~~~s~~L~~~ll~~il~ap~~fFd~tp~GrIlnRfs~Di~~vd~~l~~~l~~~~~~~~~~l~~ivv~~~~~~~l~lv 1032 (1333)
..+.+...+++.++++++++.|++| ++.++|++++|+ +|++.+.+.+...+...+..++.+++.++++++.+|+++++
T Consensus 213 ~~~~~~~~~l~~~~~~~ll~l~~~~-~~~~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li 290 (694)
T TIGR03375 213 VAGKKADLILSAKLFERVLGLRMEA-RPASVGSFANQL-REFESVRDFFTSATLTALIDLPFALLFLLVIAIIGGPLVWV 290 (694)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCccc-CCCChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 9999999999999999999999998 788999999999 79999999999888888888888888888899999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 1033 FLVILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEW 1112 (1333)
Q Consensus 1033 ~ipl~~~~~~~~~~y~~~srel~rl~~~~~spl~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~w 1112 (1333)
.+..++++..+..++.+..++..+......+...+++.|+++|+.+||+|+.|+++.+++.+..++..+..+.....+.+
T Consensus 291 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (694)
T TIGR03375 291 PLVAIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFLSNL 370 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777777777777888889999999999999999999999999999999999888887777666666
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCc
Q 000720 1113 LCLRINLLFNFAFFLVLIIL-VTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPL 1191 (1333)
Q Consensus 1113 l~~rl~ll~~~~~~~~~~~~-~~~~~~~~~~g~~gl~l~y~l~l~~~l~~~v~~~~~le~~~~SveRI~~~~~~p~E~~~ 1191 (1333)
......++..+...++++++ .....+.+++|.+-.++++...+..++..+...+.+++....+++|+.++++.|+|.+.
T Consensus 371 ~~~~~~~~~~~~~~~il~~g~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~ 450 (694)
T TIGR03375 371 ATNFAQFIQQLVSVAIVVVGVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVERPE 450 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC
Confidence 66555555544333333332 22345678888888888888888888999999999999999999999999988776432
Q ss_pred ccCCCCCCCCCCCcccEEEEEEEEEECCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCE
Q 000720 1192 VIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGV 1271 (1333)
Q Consensus 1192 ~~~~~~~~~~wp~~G~I~f~nVsf~Y~~~~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGv 1271 (1333)
+.......+..|.|+|+||+|+|+++.+++|+|+||+|+|||++||||+||||||||+++|.|+|+|++|+|.+||+
T Consensus 451 ---~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~ 527 (694)
T TIGR03375 451 ---GTRFLHRPRLQGEIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGV 527 (694)
T ss_pred ---CCCCCCCCCccceEEEEEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCE
Confidence 11111112346789999999999765567999999999999999999999999999999999999999999999999
Q ss_pred eCCCCChHHHhhcCeEecccccccccchhhhcCCCC-CCCHHHHHHHHHhCCCCcccccCC
Q 000720 1272 DISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLE-QHSDQEIWEVKISKLLTHKSYQCE 1331 (1333)
Q Consensus 1272 dI~~i~l~~LRs~isiVpQdp~LF~GTIR~NLdp~~-~~sDeeI~~aL~~~~L~~~~~~~~ 1331 (1333)
|+++++++++|++|++|||||++|+|||||||..++ +++|||+++|++++++.+...++|
T Consensus 528 ~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp 588 (694)
T TIGR03375 528 DIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHP 588 (694)
T ss_pred EhhhCCHHHHHhccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCc
Confidence 999999999999999999999999999999999875 489999999999999988776654
No 56
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=1.9e-47 Score=479.74 Aligned_cols=430 Identities=18% Similarity=0.173 Sum_probs=339.3
Q ss_pred HHHHHHHHHHHHHhhHHHHHHhcccc--ccc----chhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 896 ILLCQVLFQALQMGSNYWIAWATDEK--RKV----SREQ--LIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMI 967 (1333)
Q Consensus 896 ~ll~~~l~~~~~~~~~~wl~~~~~~~--~~~----~~~~--~l~vy~~l~~~~~i~~~~~~~~~~~~~~~~s~~L~~~ll 967 (1333)
.+++.++..++.+..++.+++.+|.. ... .... .+..+.+++++..++.++..++....+.+...++|.+++
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~l~ 100 (574)
T PRK11160 21 GILLAIVTLLASIGLLTLSGWFLSASAVAGLAGLYSFNYMLPAAGVRGAAIGRTAGRYGERLVSHDATFRVLTHLRVFTF 100 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555566666666666655421 110 0111 122344455566777788888888999999999999999
Q ss_pred HHHhcCccccccccCcchhHHHHhccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-HHHHH
Q 000720 968 TSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGISI-WYQAY 1046 (1333)
Q Consensus 968 ~~il~ap~~fFd~tp~GrIlnRfs~Di~~vd~~l~~~l~~~~~~~~~~l~~ivv~~~~~~~l~lv~ipl~~~~~-~~~~~ 1046 (1333)
+++++.|++||++.++|++++|+++|++.++..+...+..++..++.+++.++++++.+|+++++++.++++.. .+..+
T Consensus 101 ~~l~~~~~~~~~~~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~~~~~~~~~~~~ 180 (574)
T PRK11160 101 SKLLPLSPAGLARYRQGDLLNRLVADVDTLDHLYLRLISPLVAALVVILVLTIGLSFFDLTLALTLGGILLLLLLLLPLL 180 (574)
T ss_pred HHhhccChHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999887655444433 34456
Q ss_pred HHHHHHHHHHHHhHhhchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 1047 YITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFF 1126 (1333)
Q Consensus 1047 y~~~srel~rl~~~~~spl~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~ll~~~~~~ 1126 (1333)
+.+..++..+......+.+.+.+.|+++|+.+||+|+.|+++.+++.+..+++.+..........+.....+++..+...
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (574)
T PRK11160 181 FYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQWLAAQRRQANLTGLSQALMILANGLTVV 260 (574)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66667777777788888999999999999999999999999999999999999888888777777777777766665544
Q ss_pred HHHHHHHhccCCCCChHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCcccCCCCCCCCCCCc
Q 000720 1127 LVLIILVTLPRSAIDPSLAGLAATYGLN-LNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPSS 1205 (1333)
Q Consensus 1127 ~~~~~~~~~~~~~~~~g~~gl~l~y~l~-l~~~l~~~v~~~~~le~~~~SveRI~~~~~~p~E~~~~~~~~~~~~~wp~~ 1205 (1333)
++..++.....+..+.|....++.|... ....+..+...+.++.....|.+|+.++++.|+|.+. +...++ .+..
T Consensus 261 ~i~~~g~~~~~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~ll~~~~~~~~--~~~~~~--~~~~ 336 (574)
T PRK11160 261 LMLWLAAGGVGGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVIASARRINEITEQKPEVTF--PTTSTA--AADQ 336 (574)
T ss_pred HHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC--CcccCC--CCCC
Confidence 4433333333455566654444444322 2334444556677888889999999999987765321 111111 1345
Q ss_pred ccEEEEEEEEEECCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCCCChHHHhhcC
Q 000720 1206 GKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRL 1285 (1333)
Q Consensus 1206 G~I~f~nVsf~Y~~~~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~i~l~~LRs~i 1285 (1333)
|.|+|+||+|+|+++.+++|+|+||+|+|||++||||+||||||||+++|.|+|+|++|+|.+||+|+++++.+++|++|
T Consensus 337 ~~i~~~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i 416 (574)
T PRK11160 337 VSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAI 416 (574)
T ss_pred CeEEEEEEEEECCCCCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhhe
Confidence 78999999999976545699999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEecccccccccchhhhcCCC-CCCCHHHHHHHHHhCCCCccccc
Q 000720 1286 SIIPQDPMLFQGTVRTNLDPL-EQHSDQEIWEVKISKLLTHKSYQ 1329 (1333)
Q Consensus 1286 siVpQdp~LF~GTIR~NLdp~-~~~sDeeI~~aL~~~~L~~~~~~ 1329 (1333)
++|||||+||+|||||||... ++.+|+|+++|++++++.+.+.+
T Consensus 417 ~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~ 461 (574)
T PRK11160 417 SVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLED 461 (574)
T ss_pred eEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcC
Confidence 999999999999999999865 46899999999999999887654
No 57
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=2.1e-47 Score=476.82 Aligned_cols=428 Identities=18% Similarity=0.198 Sum_probs=345.1
Q ss_pred HHHHHHHHHHHhhHHHHHHhcccc--cccc---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 000720 898 LCQVLFQALQMGSNYWIAWATDEK--RKVS---REQLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFR 972 (1333)
Q Consensus 898 l~~~l~~~~~~~~~~wl~~~~~~~--~~~~---~~~~l~vy~~l~~~~~i~~~~~~~~~~~~~~~~s~~L~~~ll~~il~ 972 (1333)
++.++..++.+..++.+++..|.. +... ...+.+.+++++++..++.+++.++....+.+...++|.++++++++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~ 89 (529)
T TIGR02857 10 LLGALGALLIIAQAWLLARVIDGLISAGEPLAELLPALGALALAVLLRALLGWLGERAAARAAAAVKSQLRERLLAAVAA 89 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334455556666666666655422 1111 12334455566677778888899999999999999999999999999
Q ss_pred CccccccccCcchhHHHHhccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 973 APISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQAYYITTAR 1052 (1333)
Q Consensus 973 ap~~fFd~tp~GrIlnRfs~Di~~vd~~l~~~l~~~~~~~~~~l~~ivv~~~~~~~l~lv~ipl~~~~~~~~~~y~~~sr 1052 (1333)
.|..||++.++|++++|+++|++.+++.+...+..++..++.+++.+++++..+|+++++++..+++..++..++.+..+
T Consensus 90 ~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~l~~~~l~~~~~~~~~~~~~ 169 (529)
T TIGR02857 90 LGPGWLQGRPSGELATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFPADWISGLILLLTAPLIPIFMILIGWAAQ 169 (529)
T ss_pred CCchhhccCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988888888888888889999999998887766665555555555556666
Q ss_pred HHHHHHhHhhchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Q 000720 1053 ELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVL-II 1131 (1333)
Q Consensus 1053 el~rl~~~~~spl~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~ll~~~~~~~~~-~~ 1131 (1333)
+..+......+...+++.|+++|+.+||+|+.|+++.+++.+..++..+..........+......++..+...++. +.
T Consensus 170 ~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (529)
T TIGR02857 170 AAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLELFATLSVALVAVYI 249 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666667777899999999999999999999999999999999888887777766666766666666554433322 22
Q ss_pred HHhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCcccCCCCCCCCCCCcccEEEE
Q 000720 1132 LVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELE 1211 (1333)
Q Consensus 1132 ~~~~~~~~~~~g~~gl~l~y~l~l~~~l~~~v~~~~~le~~~~SveRI~~~~~~p~E~~~~~~~~~~~~~wp~~G~I~f~ 1211 (1333)
+.....+.++.|.+..++.|+..+..++..+...+..+.+...+.+|+.++++.|++.+. . . +...+..|.|+|+
T Consensus 250 ~~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~---~-~-~~~~~~~~~i~~~ 324 (529)
T TIGR02857 250 GFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAG---K-A-PVTAAPAPSLEFS 324 (529)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCC---C-c-CCCCCCCCeEEEE
Confidence 222235677888777777888788888888888899999999999999999985543211 1 1 1112234689999
Q ss_pred EEEEEECCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCCCChHHHhhcCeEeccc
Q 000720 1212 NLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQD 1291 (1333)
Q Consensus 1212 nVsf~Y~~~~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~i~l~~LRs~isiVpQd 1291 (1333)
||+|+|+++.+++|+|+||+|+|||++||||+||||||||+++|.|+|+|++|+|.+||+|+++++.+++|+++++||||
T Consensus 325 ~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~ 404 (529)
T TIGR02857 325 GLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQH 404 (529)
T ss_pred EEEEECCCCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheEEEcCC
Confidence 99999976555699999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccchhhhcCCC-CCCCHHHHHHHHHhCCCCcccccC
Q 000720 1292 PMLFQGTVRTNLDPL-EQHSDQEIWEVKISKLLTHKSYQC 1330 (1333)
Q Consensus 1292 p~LF~GTIR~NLdp~-~~~sDeeI~~aL~~~~L~~~~~~~ 1330 (1333)
|++|+|||||||..+ ++++|+|+++|++++++.+...+.
T Consensus 405 ~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~l 444 (529)
T TIGR02857 405 PFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAAL 444 (529)
T ss_pred CcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhC
Confidence 999999999999875 468999999999999998765544
No 58
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=1.3e-46 Score=474.50 Aligned_cols=431 Identities=19% Similarity=0.231 Sum_probs=364.2
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHhcccccc---cc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 895 VILLCQVLFQALQMGSNYWIAWATDEKRK---VS-REQLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSV 970 (1333)
Q Consensus 895 ~~ll~~~l~~~~~~~~~~wl~~~~~~~~~---~~-~~~~l~vy~~l~~~~~i~~~~~~~~~~~~~~~~s~~L~~~ll~~i 970 (1333)
+.+++.++..++....+++++...+.... .. ...+...++++.++..++.+++.++....+.+....++..+++++
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~~ 97 (571)
T TIGR02203 18 LAGVAMILVAATESTLAALLKPLLDDGFGGRDRSVLWWVPLVVIGLAVLRGICSFVSTYLLSWVSNKVVRDIRVRMFEKL 97 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455556666666666644432111 11 122334566667777788888999999999999999999999999
Q ss_pred hcCccccccccCcchhHHHHhccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 971 FRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQAYYITT 1050 (1333)
Q Consensus 971 l~ap~~fFd~tp~GrIlnRfs~Di~~vd~~l~~~l~~~~~~~~~~l~~ivv~~~~~~~l~lv~ipl~~~~~~~~~~y~~~ 1050 (1333)
++.|.++|++.+.|++++|+++|++.+++.+...+..++..++.+++.++++++.+|+++++++.+.++..++..++.+.
T Consensus 98 ~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~l~~i~l~~~~l~~~~~~~~~~~ 177 (571)
T TIGR02203 98 LGLPVSFFDRQPTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTLIVVVMLPVLSILMRRVSKR 177 (571)
T ss_pred HcCCHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999888888888888888888
Q ss_pred HHHHHHHHhHhhchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 1051 ARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLI 1130 (1333)
Q Consensus 1051 srel~rl~~~~~spl~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~ll~~~~~~~~~~ 1130 (1333)
.++..+......++..+.+.|+++|+.+||+++.++++.+++.+..++..+..........+.....+++..+...++++
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (571)
T TIGR02203 178 LRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSISSPITQLIASLALAVVLF 257 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888889999999999999999999999999999999999999999888888777777777777766554443333
Q ss_pred HH-HhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCcccCCCCCCCCCCCcccEE
Q 000720 1131 IL-VTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIE 1209 (1333)
Q Consensus 1131 ~~-~~~~~~~~~~g~~gl~l~y~l~l~~~l~~~v~~~~~le~~~~SveRI~~~~~~p~E~~~~~~~~~~~~~wp~~G~I~ 1209 (1333)
++ .....+.+++|.+..+.++...+..++..+...+.++.+...+.+|+.++++.++|.+. ...+.. +..++|+
T Consensus 258 ~g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~---~~~~~~--~~~~~i~ 332 (571)
T TIGR02203 258 IALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDT---GTRAIE--RARGDVE 332 (571)
T ss_pred HHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC---CCCCCC--CCCCeEE
Confidence 33 23346778999988889999999999999999999999999999999999987665431 111111 2457899
Q ss_pred EEEEEEEECCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCCCChHHHhhcCeEec
Q 000720 1210 LENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIP 1289 (1333)
Q Consensus 1210 f~nVsf~Y~~~~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~i~l~~LRs~isiVp 1289 (1333)
|+||+|+|+++.+++|+|+||+|++||+|||||+||||||||+++|.|+++|++|+|++||+|+++++.+++|+++++||
T Consensus 333 ~~~v~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~ 412 (571)
T TIGR02203 333 FRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVS 412 (571)
T ss_pred EEEEEEEcCCCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEEc
Confidence 99999999765556999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccchhhhcCCCC--CCCHHHHHHHHHhCCCCcccccC
Q 000720 1290 QDPMLFQGTVRTNLDPLE--QHSDQEIWEVKISKLLTHKSYQC 1330 (1333)
Q Consensus 1290 Qdp~LF~GTIR~NLdp~~--~~sDeeI~~aL~~~~L~~~~~~~ 1330 (1333)
|||++|+|||||||..++ +++|+|++++|++|++.+.....
T Consensus 413 Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~l 455 (571)
T TIGR02203 413 QDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKL 455 (571)
T ss_pred cCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhC
Confidence 999999999999998763 69999999999999998765443
No 59
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=1.6e-46 Score=474.37 Aligned_cols=429 Identities=18% Similarity=0.188 Sum_probs=353.6
Q ss_pred HHHHHHHHHHHhhHHHHHHhccccccc-ch---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 000720 898 LCQVLFQALQMGSNYWIAWATDEKRKV-SR---EQLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRA 973 (1333)
Q Consensus 898 l~~~l~~~~~~~~~~wl~~~~~~~~~~-~~---~~~l~vy~~l~~~~~i~~~~~~~~~~~~~~~~s~~L~~~ll~~il~a 973 (1333)
++.++.........++++...+..... .. ..+...+++++++..++.+++.++....+.+....++.++++++++.
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~ 111 (582)
T PRK11176 32 VALILNAASDTFMLSLLKPLLDDGFGKADRSVLKWMPLVVIGLMILRGITSFISSYCISWVSGKVVMTMRRRLFGHMMGM 111 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 333444445555666666554321111 11 11222233455566777778888888999999999999999999999
Q ss_pred ccccccccCcchhHHHHhccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 974 PISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQAYYITTARE 1053 (1333)
Q Consensus 974 p~~fFd~tp~GrIlnRfs~Di~~vd~~l~~~l~~~~~~~~~~l~~ivv~~~~~~~l~lv~ipl~~~~~~~~~~y~~~sre 1053 (1333)
|.++|++...|++++|+++|++.+.+.+...+..++..++.+++.++++++.+|+++++++.++++..++..+..+..++
T Consensus 112 ~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~ 191 (582)
T PRK11176 112 PVSFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSLILIVIAPIVSIAIRVVSKRFRN 191 (582)
T ss_pred CHHHhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999887777777766666677777777
Q ss_pred HHHHHhHhhchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 000720 1054 LARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLIIL- 1132 (1333)
Q Consensus 1054 l~rl~~~~~spl~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~ll~~~~~~~~~~~~- 1132 (1333)
..+......+...+++.|.++|+.+||+|+.|+++.+++.+..++..+..........+.....+++..+...++++++
T Consensus 192 ~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~ 271 (582)
T PRK11176 192 ISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQGMKMVSASSISDPIIQLIASLALAFVLYAAS 271 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777888999999999999999999999999999999999999998888888888877777777665444433332
Q ss_pred HhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCcccCCCCCCCCCCCcccEEEEE
Q 000720 1133 VTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELEN 1212 (1333)
Q Consensus 1133 ~~~~~~~~~~g~~gl~l~y~l~l~~~l~~~v~~~~~le~~~~SveRI~~~~~~p~E~~~~~~~~~~~~~wp~~G~I~f~n 1212 (1333)
.....+.+++|.+..++++...+..++..+...+..+++...+.+|+.++++.|+|.+. +. ....|..+.|+|+|
T Consensus 272 ~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~---~~--~~~~~~~~~i~~~~ 346 (582)
T PRK11176 272 FPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQEKDE---GK--RVIERAKGDIEFRN 346 (582)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCC---CC--cCCCCCCCeEEEEE
Confidence 22345778899988888998888899999999999999999999999999987765321 11 11124457899999
Q ss_pred EEEEECCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCCCChHHHhhcCeEecccc
Q 000720 1213 LLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDP 1292 (1333)
Q Consensus 1213 Vsf~Y~~~~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~i~l~~LRs~isiVpQdp 1292 (1333)
|+|+|+++.+++|+|+||+|+|||++||||+||||||||+++|+|+++|++|+|++||+|+++++.+++|++|++|||||
T Consensus 347 vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~ 426 (582)
T PRK11176 347 VTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNV 426 (582)
T ss_pred EEEecCCCCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEccCc
Confidence 99999766567999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccchhhhcCCC--CCCCHHHHHHHHHhCCCCcccccCC
Q 000720 1293 MLFQGTVRTNLDPL--EQHSDQEIWEVKISKLLTHKSYQCE 1331 (1333)
Q Consensus 1293 ~LF~GTIR~NLdp~--~~~sDeeI~~aL~~~~L~~~~~~~~ 1331 (1333)
++|+||||+||..+ ++++|+|+++|++++++.+.+...|
T Consensus 427 ~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp 467 (582)
T PRK11176 427 HLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMD 467 (582)
T ss_pred eeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcc
Confidence 99999999999864 3489999999999999987765543
No 60
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=1.4e-46 Score=482.87 Aligned_cols=448 Identities=18% Similarity=0.205 Sum_probs=359.4
Q ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhHHHHHHhccccc-ccc---hhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 877 WTVYSAFITLVYKGALVPVILLCQVLFQALQMGSNYWIAWATDEKR-KVS---REQLIGVFIFLSGGSSFFILGRAVLLA 952 (1333)
Q Consensus 877 ~~~y~~y~~~~~~~~~~~~~ll~~~l~~~~~~~~~~wl~~~~~~~~-~~~---~~~~l~vy~~l~~~~~i~~~~~~~~~~ 952 (1333)
+..++.+++...+ .+...+++.++..++..+.++.++...|... ..+ ...+...++++.++..++.+++.++..
T Consensus 127 ~~~~~~~~~~~~~--~~~~~~~~s~~~~ll~l~~p~~~~~iid~v~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~ 204 (694)
T TIGR01846 127 FSWFIPAIIRYRK--QFREVLLISLALQLFALVTPLLFQVVIDKVLVHRGLSTLSVLALAMLAVAIFEPALGGLRTYLFA 204 (694)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555543211 2223344445556666777777776554321 111 122334455556667788889999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCccccccccCcchhHHHHhccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 000720 953 TIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPL 1032 (1333)
Q Consensus 953 ~~~~~~s~~L~~~ll~~il~ap~~fFd~tp~GrIlnRfs~Di~~vd~~l~~~l~~~~~~~~~~l~~ivv~~~~~~~l~lv 1032 (1333)
..+.+...+++.++++++++.|++||++.++|++++|+ +|++.+.+.+...+..++..++.+++.++++++.+|+++++
T Consensus 205 ~~~~~~~~~l~~~~~~~l~~l~~~~f~~~~~g~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li 283 (694)
T TIGR01846 205 HLTSRIDVELGARLYRHLLGLPLGYFESRRVGDTVARV-RELEQIRNFLTGSALTVVLDLLFVVVFLAVMFFYSPTLTGV 283 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHcCCCCHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999 69999999998888877777777777788899999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 1033 FLVILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEW 1112 (1333)
Q Consensus 1033 ~ipl~~~~~~~~~~y~~~srel~rl~~~~~spl~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~w 1112 (1333)
++..++++..+..+..+..++..+......+...+++.|+++|+.+||+||.|+++.+++.+..++..+..+.......+
T Consensus 284 ~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (694)
T TIGR01846 284 VIGSLVCYALLSVFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLGNI 363 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77666666666555655556666666667788899999999999999999999999999999999998888888777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-hccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCc
Q 000720 1113 LCLRINLLFNFAFFLVLIILV-TLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPL 1191 (1333)
Q Consensus 1113 l~~rl~ll~~~~~~~~~~~~~-~~~~~~~~~g~~gl~l~y~l~l~~~l~~~v~~~~~le~~~~SveRI~~~~~~p~E~~~ 1191 (1333)
.....+++..+..+++.+++. ....+.++.|.+..+.++...+..++..+...+.+++....++||+.++++.|+|.+.
T Consensus 364 ~~~~~~~i~~~~~~~il~~g~~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~ 443 (694)
T TIGR01846 364 AGQAIELIQKLTFAILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPRS 443 (694)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccC
Confidence 777777766654444433332 2345778888888888888888899999999999999999999999999988776431
Q ss_pred ccCCCCCCCCCCCcccEEEEEEEEEECCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCE
Q 000720 1192 VIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGV 1271 (1333)
Q Consensus 1192 ~~~~~~~~~~wp~~G~I~f~nVsf~Y~~~~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGv 1271 (1333)
. +..+.+ ...|.|+|+||+|+|+++.+++|+|+||+|+|||++||||+||||||||+++|.|+|+|++|+|+|||+
T Consensus 444 ~--~~~~~~--~~~~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~ 519 (694)
T TIGR01846 444 A--GLAALP--ELRGAITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGV 519 (694)
T ss_pred C--CCCCCC--CCCCeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCE
Confidence 1 111111 235789999999999876667999999999999999999999999999999999999999999999999
Q ss_pred eCCCCChHHHhhcCeEecccccccccchhhhcCCC-CCCCHHHHHHHHHhCCCCcccccCC
Q 000720 1272 DISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPL-EQHSDQEIWEVKISKLLTHKSYQCE 1331 (1333)
Q Consensus 1272 dI~~i~l~~LRs~isiVpQdp~LF~GTIR~NLdp~-~~~sDeeI~~aL~~~~L~~~~~~~~ 1331 (1333)
|+++++.+++|+++++|||||++|+|||||||... ++++|+++++|++++++.+...+.|
T Consensus 520 ~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp 580 (694)
T TIGR01846 520 DLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELP 580 (694)
T ss_pred ehhhCCHHHHHHhCeEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCc
Confidence 99999999999999999999999999999999875 4689999999999999988765543
No 61
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=5.1e-46 Score=478.90 Aligned_cols=462 Identities=21% Similarity=0.269 Sum_probs=345.9
Q ss_pred HHHHHHHHHHHHHHHHhcccc--C-CCChHHHHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 000720 346 GIRVRSALTVLIYKRSMAIKF--A-GPSSGIIINMINVDVERIGDFFLYI-HRIWLLPVQVFLALVILYKNLGAAPAFAA 421 (1333)
Q Consensus 346 ~~rir~~l~~~iy~K~L~ls~--~-~~~~G~i~nlms~D~~~i~~~~~~~-~~~w~~plqi~~~l~lL~~~lG~~a~l~g 421 (1333)
|++.-..|-..++++.++-+. . ..++|.|+|..|.|++.+.+-++.. ..+....++++.++.+.-...- +..++.
T Consensus 886 ~l~aS~~Lh~~ml~~Ilrapm~FFdtTP~GRILNRFSkD~~~vD~~Lp~~~~~~~~~~~~~l~~~~vi~~~~P-~fli~~ 964 (1381)
T KOG0054|consen 886 GLKASRKLHDKLLNSILRAPMSFFDTTPTGRILNRFSKDIDTVDVLLPFTLEFFLQSLLNVLGILVVISYVTP-WFLIAI 964 (1381)
T ss_pred HHHHHHHHHHHHHHHHHhCcchhcCCCCccchhhhcccchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHhH-HHHHHH
Confidence 344444444555555554332 2 2389999999999999999876544 3444444555555444443332 444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 422 LFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAI 501 (1333)
Q Consensus 422 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~R~~~~~E~L~~Ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~a~~ 501 (1333)
+.+.++...++.++.+-.+..++--...+.-=....+|.|+|+-+|+.|+.|++|.++-.+.=+.-. +.+.+..+.+
T Consensus 965 ~pl~v~~~~~~~~Y~~tsReLkRLesitRSPi~sh~~Etl~GlsTIRAf~~~~rf~~~~~~~~D~~~---~~~f~~~~a~ 1041 (1381)
T KOG0054|consen 965 IPLGVIYYFVQRYYLATSRELKRLESITRSPIYSHFSETLQGLSTIRAFGKEERFIQENDELIDENS---RAFFLSISAN 1041 (1381)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHhhhcccchHHHhHHHHhcCcceeeeccccHHHHHHHHHHhhhhH---HHHHHHHHHH
Confidence 4445544444444443333333333333444467889999999999999999999988766533221 2222222222
Q ss_pred HHHHHHH----HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC-C
Q 000720 502 AFLFWAS----PTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQ-K 576 (1333)
Q Consensus 502 ~~~~~~~----p~lv~~~tF~~~~~~~~~Lt~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~-~ 576 (1333)
-++..-. ..++..+++.+.+..++..+||.|=-+++.--.+..-+..+-.....+-.-.+|.+||.+|.+.|++ +
T Consensus 1042 RWla~Rle~ig~~~v~~~al~~vl~~~~~~~~g~vGLslsyal~lt~~l~~~vR~~~elEn~m~SVERv~eY~~~~~E~p 1121 (1381)
T KOG0054|consen 1042 RWLAVRLELLGNLVVLIAALFAVLLPSGLISPGLVGLSLSYALQLTGLLQWLVRQSSELENNMVSVERVLEYTDIPSEAP 1121 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHhcCCCCCC
Confidence 2221111 1222222222222223337788887777766667777777777778888889999999999995542 1
Q ss_pred CCC-C--CCCCCCCCccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCC
Q 000720 577 KPI-T--EPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISG 652 (1333)
Q Consensus 577 ~~~-~--~~~~~~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G 652 (1333)
... + .++..++++.|+|+|.+..|.++ .+++||+ |++|++||++||||++|||||||+++|.++.+|.+|
T Consensus 1122 ~~~~~~~pp~~WP~~G~I~f~~~~~RYrp~------lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G 1195 (1381)
T KOG0054|consen 1122 LEIEESRPPPSWPSKGEIEFEDLSLRYRPN------LPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEG 1195 (1381)
T ss_pred CCCcCCCCCCCCCCCCeEEEEEeEEEeCCC------CcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCC
Confidence 111 1 23344678899999999999875 4689999 999999999999999999999999999999999999
Q ss_pred cEEEECC-------------eEEEEcCCCCCCCCCHHHHhccCCcCCHHHHHHHHHHcccchHHHhhcCCCccccCCCCC
Q 000720 653 AAIKVHG-------------KKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGI 719 (1333)
Q Consensus 653 ~~i~~~g-------------~iayv~Q~~~i~~~Tv~enI~~g~~~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~ 719 (1333)
++ .+|| +++.+||+|.+|+||+|.|+.--.++.++...++++.|.|.+-++.+|.|.++++.|+|.
T Consensus 1196 ~I-~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGTvR~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~ 1274 (1381)
T KOG0054|consen 1196 EI-LIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTVRFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGE 1274 (1381)
T ss_pred eE-EEcCeecccccHHHHHhcCeeeCCCCceecCccccccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCc
Confidence 96 7776 579999999999999999998777888888899999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhcCCEEEEEeCCeEEE
Q 000720 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQ 799 (1333)
Q Consensus 720 ~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~aD~i~vl~~G~i~~ 799 (1333)
|+|-||||-++|||||.++++|++|||+|+++|++| ..+.++.++...+++|||.|.|+++.+.++|||+|||+|+|+|
T Consensus 1275 N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~T-D~lIQ~tIR~~F~dcTVltIAHRl~TVmd~DrVlVld~G~v~E 1353 (1381)
T KOG0054|consen 1275 NFSVGQRQLLCLARALLRKSKILVLDEATASVDPET-DALIQKTIREEFKDCTVLTIAHRLNTVMDSDRVLVLDAGRVVE 1353 (1381)
T ss_pred cCChHHHHHHHHHHHHhccCCEEEEecccccCChHH-HHHHHHHHHHHhcCCeEEEEeeccchhhhcCeEEEeeCCeEee
Confidence 999999999999999999999999999999999998 6677888898899999999999999999999999999999999
Q ss_pred ccChHHHHhhcchHHHHHHH
Q 000720 800 SGKYEDLIADQNSELVRQMK 819 (1333)
Q Consensus 800 ~g~~~~l~~~~~~~~~~~~~ 819 (1333)
.|+|++++++++..+.+.+.
T Consensus 1354 fdsP~~Ll~~~~S~f~~~l~ 1373 (1381)
T KOG0054|consen 1354 FDSPAELLSDKDSLFSSLLK 1373 (1381)
T ss_pred cCChHHHHhCCcchHHHHHH
Confidence 99999999877776654443
No 62
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=1.3e-45 Score=465.64 Aligned_cols=432 Identities=19% Similarity=0.237 Sum_probs=349.4
Q ss_pred HHHHHHHHHHHHhhHHHHHHhccc-ccccc---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 000720 897 LLCQVLFQALQMGSNYWIAWATDE-KRKVS---REQLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFR 972 (1333)
Q Consensus 897 ll~~~l~~~~~~~~~~wl~~~~~~-~~~~~---~~~~l~vy~~l~~~~~i~~~~~~~~~~~~~~~~s~~L~~~ll~~il~ 972 (1333)
+++.++..++.++.++.+....|. -...+ ...++.+++++.++..++.+++.++....+.+....++.++++++++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~ 103 (576)
T TIGR02204 24 LVALLITAAATLSLPYAVRLMIDHGFSKDSSGLLNRYFAFLLVVALVLALGTAARFYLVTWLGERVVADIRRAVFAHLIS 103 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 334455566666666666654432 11111 12233344444555666777888888899999999999999999999
Q ss_pred CccccccccCcchhHHHHhccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 973 APISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQAYYITTAR 1052 (1333)
Q Consensus 973 ap~~fFd~tp~GrIlnRfs~Di~~vd~~l~~~l~~~~~~~~~~l~~ivv~~~~~~~l~lv~ipl~~~~~~~~~~y~~~sr 1052 (1333)
.|.++|+..+.|++++|+++|++.+++.....+..++..++.+++.+++++..+|+++++++..+++.+.+..++.+..+
T Consensus 104 ~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~l~~~~~~~~~~~~~ 183 (576)
T TIGR02204 104 LSPSFFDKNRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLTSLVLLAVPLVLLPILLFGRRVR 183 (576)
T ss_pred CCHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998989899999999999999999999888777666666666666777777
Q ss_pred HHHHHHhHhhchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 1053 ELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLIIL 1132 (1333)
Q Consensus 1053 el~rl~~~~~spl~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~ll~~~~~~~~~~~~ 1132 (1333)
...+......+...+++.|+++|+.+||+|+.|+++.+++.+..++..+..........|+.....++..+...++.+++
T Consensus 184 ~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 263 (576)
T TIGR02204 184 KLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRTRALLTAIVIVLVFGAIVGVLWVG 263 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77788888888999999999999999999999999999999999988877776666666666555554433333322222
Q ss_pred -HhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCcccCCCCCCCCCCCcccEEEE
Q 000720 1133 -VTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELE 1211 (1333)
Q Consensus 1133 -~~~~~~~~~~g~~gl~l~y~l~l~~~l~~~v~~~~~le~~~~SveRI~~~~~~p~E~~~~~~~~~~~~~wp~~G~I~f~ 1211 (1333)
.....+.+++|.+..+..|...+..++..+...+.++.+...+.+|+.++++.++|.+.. ....+..+|..+.|+|+
T Consensus 264 ~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~--~~~~~~~~~~~~~i~~~ 341 (576)
T TIGR02204 264 AHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKAP--AHPKTLPVPLRGEIEFE 341 (576)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCC--CCCccCCcCCCceEEEE
Confidence 223456788888888888888899999999999999999999999999999876553211 11111223445789999
Q ss_pred EEEEEECCCC-CCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCCCChHHHhhcCeEecc
Q 000720 1212 NLLVQYNPTL-PMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQ 1290 (1333)
Q Consensus 1212 nVsf~Y~~~~-p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~i~l~~LRs~isiVpQ 1290 (1333)
||+|+|+++. +++|+|+||+|+|||++||||+||||||||+++|.|+++|++|+|.+||+|+++++.+++|++++++||
T Consensus 342 ~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q 421 (576)
T TIGR02204 342 QVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQ 421 (576)
T ss_pred EEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHhceEEcc
Confidence 9999997532 569999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccchhhhcCCCC-CCCHHHHHHHHHhCCCCcccccC
Q 000720 1291 DPMLFQGTVRTNLDPLE-QHSDQEIWEVKISKLLTHKSYQC 1330 (1333)
Q Consensus 1291 dp~LF~GTIR~NLdp~~-~~sDeeI~~aL~~~~L~~~~~~~ 1330 (1333)
||++|+|||||||.+++ +.+|+++|++|+++++.+.+.+.
T Consensus 422 ~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l 462 (576)
T TIGR02204 422 DPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISAL 462 (576)
T ss_pred CCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhC
Confidence 99999999999998754 57999999999999998765544
No 63
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=8.6e-45 Score=458.42 Aligned_cols=434 Identities=14% Similarity=0.159 Sum_probs=341.8
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHhcccccc-cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000720 893 VPVILLCQVLFQALQMGSNYWIAWATDEKRK-VSREQLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVF 971 (1333)
Q Consensus 893 ~~~~ll~~~l~~~~~~~~~~wl~~~~~~~~~-~~~~~~l~vy~~l~~~~~i~~~~~~~~~~~~~~~~s~~L~~~ll~~il 971 (1333)
+.+.+++.++..++.+..++++.+..|.-.. .....++.+++++.++..+..+....+......+....++.+++++++
T Consensus 21 ~~~~~~~~i~~~~~~~~~~~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~ 100 (588)
T PRK13657 21 GILLAVANVLLAAATFAEPILFGRIIDAISGKGDIFPLLAAWAGFGLFNIIAGVLVARHADRLAHRRRLAVLTEYFERII 100 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555566777777788888766653221 111122333333333333344444444455555666667779999999
Q ss_pred cCccccccccCcchhHHHHhccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 972 RAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQAYYITTA 1051 (1333)
Q Consensus 972 ~ap~~fFd~tp~GrIlnRfs~Di~~vd~~l~~~l~~~~~~~~~~l~~ivv~~~~~~~l~lv~ipl~~~~~~~~~~y~~~s 1051 (1333)
+.|..+|++.+.|++++|+++|++.+.......+..++..++..++.+++++..+|+++++++.+++++..+..++.+..
T Consensus 101 ~~~~~~~~~~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~~l~~~i~~~~~~~~ 180 (588)
T PRK13657 101 QLPLAWHSQRGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALFMNWRLSLVLVVLGIVYTLITTLVMRKT 180 (588)
T ss_pred hCCHHHHCcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988888888888888888888888899999998888877777777788888888
Q ss_pred HHHHHHHhHhhchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 1052 RELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLII 1131 (1333)
Q Consensus 1052 rel~rl~~~~~spl~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~ll~~~~~~~~~~~ 1131 (1333)
++..+......+...+++.|+++|+.+||+|+.++.+.+++.+..++..+..........+.....+++..+...+++++
T Consensus 181 ~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (588)
T PRK13657 181 KDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLSWWALASVLNRAASTITMLAILVL 260 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888889999999999999999999999999999999999998888777666666665555555444433333332
Q ss_pred H-HhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCcccCCCCCCCCCCCcccEEE
Q 000720 1132 L-VTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIEL 1210 (1333)
Q Consensus 1132 ~-~~~~~~~~~~g~~gl~l~y~l~l~~~l~~~v~~~~~le~~~~SveRI~~~~~~p~E~~~~~~~~~~~~~wp~~G~I~f 1210 (1333)
+ .....+.+++|.+..++.+...+...+..+...+.++.....+.+|+.++.+.+++.+.. ++ ..+. -+..+.|+|
T Consensus 261 g~~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~-~~-~~~~-~~~~~~I~~ 337 (588)
T PRK13657 261 GAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDVRDP-PG-AIDL-GRVKGAVEF 337 (588)
T ss_pred HHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCC-CC-CCCc-CCCCCeEEE
Confidence 2 223467788998888888888888888888888888999999999999998765442211 11 1111 123468999
Q ss_pred EEEEEEECCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCCCChHHHhhcCeEecc
Q 000720 1211 ENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQ 1290 (1333)
Q Consensus 1211 ~nVsf~Y~~~~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~i~l~~LRs~isiVpQ 1290 (1333)
+||+|+|+++ +++|+|+||+++|||++||||+||||||||+++|.|+|+|++|+|.|||+|+++++.+++|++|++|||
T Consensus 338 ~~vsf~y~~~-~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q 416 (588)
T PRK13657 338 DDVSFSYDNS-RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQ 416 (588)
T ss_pred EEEEEEeCCC-CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEEEec
Confidence 9999999744 459999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccchhhhcCCC-CCCCHHHHHHHHHhCCCCcccccC
Q 000720 1291 DPMLFQGTVRTNLDPL-EQHSDQEIWEVKISKLLTHKSYQC 1330 (1333)
Q Consensus 1291 dp~LF~GTIR~NLdp~-~~~sDeeI~~aL~~~~L~~~~~~~ 1330 (1333)
||.||+|||||||..+ ++.+|+|+++|++++++.+...+.
T Consensus 417 ~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~l 457 (588)
T PRK13657 417 DAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERK 457 (588)
T ss_pred CcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhC
Confidence 9999999999999876 468999999999999998766544
No 64
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-45 Score=413.47 Aligned_cols=436 Identities=22% Similarity=0.301 Sum_probs=332.3
Q ss_pred ChHHHHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 370 SSGIIINMINVDVERIGDFFLY-IHRIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFVMVSNTPLANRQERFHSMIME 448 (1333)
Q Consensus 370 ~~G~i~nlms~D~~~i~~~~~~-~~~~w~~plqi~~~l~lL~~~lG~~a~l~gl~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (1333)
.+|.+.--+..-..-|+...++ +..+-...+++.+...++++..|||.+...++.+++...+......+-..++++.++
T Consensus 37 ~TGglsR~ierGtkgI~~i~~~~l~~i~P~~~Ei~l~~vi~~~~~~~~f~~~t~vtv~lY~~ftv~~s~wr~~~rr~~n~ 116 (497)
T COG5265 37 RTGGLSRAIERGTKGIETILRWILFNILPTLVEISLVAVILWRVYGWWFALTTLVTVILYLLFTVIVSDWRTDFRRLMNN 116 (497)
T ss_pred ccCceeeHhhcCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHhheeehhhhHHHHHhhhh
Confidence 3444333333333344444443 334445568999999999999997777777666666665555555555555555555
Q ss_pred HHHHHHHHHHHHHhhhHHHHHhchHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 000720 449 AKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRL----REIERDSLKKYLYTCSAIAFLFWASPTLVSVITFGVCILLK 524 (1333)
Q Consensus 449 ~~D~R~~~~~E~L~~Ir~IK~~~wE~~f~~~i~~~----R~~E~~~l~~~~~~~a~~~~~~~~~p~lv~~~tF~~~~~~~ 524 (1333)
+-.+--...-+.|-|-.++|.|+=|+.+..+..+. ++.+++..-....+...-..++.. .+....+-+..-+..
T Consensus 117 aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k~~~Sl~~Ln~gQ~~I~~~--~l~~~m~~s~~~v~~ 194 (497)
T COG5265 117 ADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIKVHVSLLVLNFGQTAIFST--GLRVMMTMSALGVEE 194 (497)
T ss_pred hhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHHHHHHHHHHHHHhhHHHHHH--HHHHHHhhcHHHHhh
Confidence 44444556778999999999999999877776543 333333222111211111111111 111122223333446
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-CCCCCCCCCCC-CCCccEEEeeeEEEcCC
Q 000720 525 TPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDN-QKKPITEPTSK-ASDVAIDIEAGEYAWDA 602 (1333)
Q Consensus 525 ~~Lt~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e-~~~~~~~~~~~-~~~~~I~i~~~~fsw~~ 602 (1333)
+.+|.++..-.-++...+..|++.+......+-|+++.++++.+.+..+- ..+...-++.. ...+.|.|+|++|.|+.
T Consensus 195 g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl~~~~~v~d~pda~~L~~~~~g~v~F~~V~F~y~~ 274 (497)
T COG5265 195 GQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLDVEAEVSDAPDAPPLWPVRLGAVAFINVSFAYDP 274 (497)
T ss_pred ccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhhccchhhccCCCCccccccccceEEEEEEEeeccc
Confidence 78999999999999999999999999999999999999999999887664 22211111111 33467999999999986
Q ss_pred cccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECCe-------------EEEEcCCC
Q 000720 603 REENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK-------------KAYVPQSS 668 (1333)
Q Consensus 603 ~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g~-------------iayv~Q~~ 668 (1333)
+ .+.|++ |+++++|+.++++||+|+||||+++.|.+.+++.+|.+ .++|+ ||.|||+.
T Consensus 275 ~-------r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I-~id~qdir~vtq~slR~aIg~VPQDt 346 (497)
T COG5265 275 R-------RPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSI-TIDGQDIRDVTQQSLRRAIGIVPQDT 346 (497)
T ss_pred c-------chhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceE-EEcchhHHHhHHHHHHHHhCcCcccc
Confidence 5 789999 99999999999999999999999999999999999986 77774 69999999
Q ss_pred CCCCCCHHHHhccCCcC-CHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCC
Q 000720 669 WIQTGTIRENILFGKDM-RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDP 747 (1333)
Q Consensus 669 ~i~~~Tv~enI~~g~~~-~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDEP 747 (1333)
.+||.|+..||.+|++- .++......++.++.+.++.+|+|.+|.+||+|-.||||+||||++||++.++|+|++|||.
T Consensus 347 vLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk~p~il~~dea 426 (497)
T COG5265 347 VLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEA 426 (497)
T ss_pred eehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhcCCCEEEEehh
Confidence 99999999999999864 34445566777888888999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhcCCEEEEEeCCeEEEccChHHHHhhcchHHHHH
Q 000720 748 FSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQ 817 (1333)
Q Consensus 748 ~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~aD~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~ 817 (1333)
|||||.|+.+.+ +..++...+|+|.+++.|+++.+-.||.|+||++|+|+|.|+++++++ .++.+.++
T Consensus 427 tsaldt~te~~i-q~~l~~~~~~rttlviahrlsti~~adeiivl~~g~i~erg~h~~ll~-~~g~ya~m 494 (497)
T COG5265 427 TSALDTHTEQAI-QAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVERGTHEELLA-AGGLYAEM 494 (497)
T ss_pred hhHhhhhHHHHH-HHHHHHHhCCCeEEEEeehhhhccCCceEEEeeCCEEEecCcHHHHHH-cCChHHHH
Confidence 999999997766 445677778999999999999999999999999999999999999998 45555543
No 65
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=6.1e-45 Score=457.12 Aligned_cols=396 Identities=19% Similarity=0.208 Sum_probs=323.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCcchhHHHHhccHHHHHhHHHHHHHHHH
Q 000720 930 IGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLA 1009 (1333)
Q Consensus 930 l~vy~~l~~~~~i~~~~~~~~~~~~~~~~s~~L~~~ll~~il~ap~~fFd~tp~GrIlnRfs~Di~~vd~~l~~~l~~~~ 1009 (1333)
+++++++.++..++.+++.++....+.+...++|.++++++++.|++||++.++|++++|+++|++.++......+..++
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~i~srl~~Dv~~i~~~~~~~~~~~~ 118 (569)
T PRK10789 39 IGTMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQHPEFYLRHRTGDLMARATNDVDRVVFAAGEGVLTLV 118 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCCHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 44444455556666777777888889999999999999999999999999999999999999999999987777777777
Q ss_pred HHHHHHHHHHHHH-HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhchHHHHHHHHhcchHHHHhcccHHHH
Q 000720 1010 FALIQLLSIIILM-SQAAWQVFPLFLVILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRF 1088 (1333)
Q Consensus 1010 ~~~~~~l~~ivv~-~~~~~~l~lv~ipl~~~~~~~~~~y~~~srel~rl~~~~~spl~~~~~Etl~G~~tIRaf~~e~~f 1088 (1333)
..++..++.++++ +..+|+++++++..+++..++.+.+.+..++..+......+.+.+++.|+++|+.+||+|+.|+++
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~ 198 (569)
T PRK10789 119 DSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLHERFKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQ 198 (569)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHH
Confidence 7766666665555 478998888777777777777777777777777777778889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 1089 LLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLIIL-VTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLC 1167 (1333)
Q Consensus 1089 ~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~ll~~~~~~~~~~~~-~~~~~~~~~~g~~gl~l~y~l~l~~~l~~~v~~~~ 1167 (1333)
.+++.+..++..+..........+..........+...++.+++ .....+.+++|.+..+..|...+..++..+...+.
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~ 278 (569)
T PRK10789 199 SALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGGGSWMVVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFN 278 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888877776655555544444443333222222222 22345678888887788888888888888888889
Q ss_pred HHHHHhhHHHHHHHhhcCCCCCCcccCCCCCCCCCCCcccEEEEEEEEEECCCCCCccccceEEecCCcEEEEECCCCcc
Q 000720 1168 NVENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSG 1247 (1333)
Q Consensus 1168 ~le~~~~SveRI~~~~~~p~E~~~~~~~~~~~~~wp~~G~I~f~nVsf~Y~~~~p~VLk~Is~~I~~GekVgIVGrTGSG 1247 (1333)
+++....+.+|+.++++.++|.+. +..+.+ +..|.|+|+||+|+|+++.+++|+|+||+|+|||++||||+||||
T Consensus 279 ~~~~~~~a~~ri~~ll~~~~~~~~---~~~~~~--~~~~~I~~~~v~~~y~~~~~~~l~~i~~~i~~G~~~~ivG~sGsG 353 (569)
T PRK10789 279 IVERGSAAYSRIRAMLAEAPVVKD---GSEPVP--EGRGELDVNIRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGSG 353 (569)
T ss_pred HHHHHHHHHHHHHHHHcCCCcccC---CCCCCC--CCCCcEEEEEEEEECCCCCCccccCeeEEECCCCEEEEECCCCCC
Confidence 999999999999999987654321 111111 235789999999999765456999999999999999999999999
Q ss_pred HHHHHHHHhcccCCCCCeEEEcCEeCCCCChHHHhhcCeEecccccccccchhhhcCCC-CCCCHHHHHHHHHhCCCCcc
Q 000720 1248 KSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPL-EQHSDQEIWEVKISKLLTHK 1326 (1333)
Q Consensus 1248 KSTLi~lL~Rl~ep~~G~I~IDGvdI~~i~l~~LRs~isiVpQdp~LF~GTIR~NLdp~-~~~sDeeI~~aL~~~~L~~~ 1326 (1333)
||||+++|.|+++|++|+|.+||+|+++++.+++|+++++|||||++|+|||||||..+ .+++|+++++|++++++.+.
T Consensus 354 KSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~ 433 (569)
T PRK10789 354 KSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDD 433 (569)
T ss_pred HHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeeccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999876 46899999999999999876
Q ss_pred cccC
Q 000720 1327 SYQC 1330 (1333)
Q Consensus 1327 ~~~~ 1330 (1333)
+.+.
T Consensus 434 i~~l 437 (569)
T PRK10789 434 ILRL 437 (569)
T ss_pred HHhC
Confidence 5443
No 66
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=2.2e-44 Score=452.77 Aligned_cols=431 Identities=15% Similarity=0.191 Sum_probs=337.4
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHhccccccc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 000720 895 VILLCQVLFQALQMGSNYWIAWATDEKRKV-SREQLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRA 973 (1333)
Q Consensus 895 ~~ll~~~l~~~~~~~~~~wl~~~~~~~~~~-~~~~~l~vy~~l~~~~~i~~~~~~~~~~~~~~~~s~~L~~~ll~~il~a 973 (1333)
+.+++.++..++.++.++.+++..|..... +...++..++++.++..+..+....+....+.+...++++++++++++.
T Consensus 23 ~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~l 102 (585)
T TIGR01192 23 LIVIANITLAAITIAEPILFGRIIDAISSKSDVLPTLALWAGFGVFNTIAYVLVAREADRLAHGRRATLLTEAFGRIISM 102 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 444555666677777777777666422111 1112222222333333334444444445556666667777999999999
Q ss_pred ccccccccCcchhHHHHhccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 974 PISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQAYYITTARE 1053 (1333)
Q Consensus 974 p~~fFd~tp~GrIlnRfs~Di~~vd~~l~~~l~~~~~~~~~~l~~ivv~~~~~~~l~lv~ipl~~~~~~~~~~y~~~sre 1053 (1333)
|++||+++++|++++|+++|++.+...+...+..++..++.+++.+++++..+|.++++++.+++++.++.+.+.+..++
T Consensus 103 ~~~~~~~~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~ 182 (585)
T TIGR01192 103 PLSWHQQRGTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFAMDWRLSIVLMVLGILYILIAKLVMQRTKN 182 (585)
T ss_pred CHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988888888888888888888899999999998888888888888888888888
Q ss_pred HHHHHhHhhchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 000720 1054 LARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLIIL- 1132 (1333)
Q Consensus 1054 l~rl~~~~~spl~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~ll~~~~~~~~~~~~- 1132 (1333)
..+......+...+++.|+++|+.|||+|+.|+++.+++.+..++..+..+.......+......++..+...++++++
T Consensus 183 ~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~ 262 (585)
T TIGR01192 183 GQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLDWWALASGLNRMASTISMMCILVIGT 262 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888889999999999999999999999999999999988887777665554444444444444433333333222
Q ss_pred HhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCcccCCCCCCCCCC-CcccEEEE
Q 000720 1133 VTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPSPEWP-SSGKIELE 1211 (1333)
Q Consensus 1133 ~~~~~~~~~~g~~gl~l~y~l~l~~~l~~~v~~~~~le~~~~SveRI~~~~~~p~E~~~~~~~~~~~~~wp-~~G~I~f~ 1211 (1333)
.....+.+++|.+..++.|...+...+..+...+.++.....+++|+.++.+.+++.+. ...+ ..++ ..|.|+|+
T Consensus 263 ~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~---~~~~-~~~~~~~~~i~~~ 338 (585)
T TIGR01192 263 VLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQREE---PADA-PELPNVKGAVEFR 338 (585)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccC---CccC-CCCCCCCCeEEEE
Confidence 22346678888888888888888888888888888889999999999999876544221 1111 1122 35689999
Q ss_pred EEEEEECCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCCCChHHHhhcCeEeccc
Q 000720 1212 NLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQD 1291 (1333)
Q Consensus 1212 nVsf~Y~~~~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~i~l~~LRs~isiVpQd 1291 (1333)
||+|+|+++. ++|+|+||+|++||++||||+||||||||+++|.|+++|++|+|.+||+|+++++.+++|+++++||||
T Consensus 339 ~v~~~y~~~~-~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~ 417 (585)
T TIGR01192 339 HITFEFANSS-QGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQD 417 (585)
T ss_pred EEEEECCCCC-ccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheEEEccC
Confidence 9999997544 499999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccchhhhcCCC-CCCCHHHHHHHHHhCCCCcccccC
Q 000720 1292 PMLFQGTVRTNLDPL-EQHSDQEIWEVKISKLLTHKSYQC 1330 (1333)
Q Consensus 1292 p~LF~GTIR~NLdp~-~~~sDeeI~~aL~~~~L~~~~~~~ 1330 (1333)
|.+|+|||||||..+ ++++|+|+++|++.+++.+...+.
T Consensus 418 ~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l 457 (585)
T TIGR01192 418 AGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKR 457 (585)
T ss_pred CccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhc
Confidence 999999999999876 458999999999999988765443
No 67
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=4.5e-44 Score=447.62 Aligned_cols=429 Identities=15% Similarity=0.102 Sum_probs=326.5
Q ss_pred HHHHHHHHHHHHhhHHHHHHhcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Q 000720 897 LLCQVLFQALQMGSNYWIAWATDEKRKVSREQLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPIS 976 (1333)
Q Consensus 897 ll~~~l~~~~~~~~~~wl~~~~~~~~~~~~~~~l~vy~~l~~~~~i~~~~~~~~~~~~~~~~s~~L~~~ll~~il~ap~~ 976 (1333)
+++.++..+..+...+.++.+.+...... ...+..++++.++..++.++..++....+.+...++|.++++++++.|++
T Consensus 24 ~~~~~~~~~~~~~~~~~i~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~l~~~~~~ 102 (555)
T TIGR01194 24 IALGLAGGLAIIALLASINNAIHEENFLG-QGSLFSFGGLCLLALLFRIGADIFPAYAGMHIIANLRIALCEKILGAPIE 102 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCccc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH
Confidence 33444555555666666666654221111 11223344455566677888888889999999999999999999999999
Q ss_pred cccccCcchhHHHHhccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 977 FFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQAYYITTARELAR 1056 (1333)
Q Consensus 977 fFd~tp~GrIlnRfs~Di~~vd~~l~~~l~~~~~~~~~~l~~ivv~~~~~~~l~lv~ipl~~~~~~~~~~y~~~srel~r 1056 (1333)
||++.++|++++|+++|++.+++.+.. +..++..++.+++.++++++.+|.++++++.++++...+..+..+..++..+
T Consensus 103 ~~~~~~~G~l~srl~~Dv~~i~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~L~li~l~~~~~~~~~~~~~~~~~~~~~~ 181 (555)
T TIGR01194 103 EIDRRGAHNLIPLLTHDIDQINAFLFI-FPPIAIALAIFFFCIAYLAYLSVPMFAITISAIIIGTAAQLLAFMGGFKFFH 181 (555)
T ss_pred HHHhcCcchhhHHHhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998864 7777888888888999999999999988777666666666656555666666
Q ss_pred HHhHhhchHHHHHHHHhcchHHHHhcccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000720 1057 MVGTRKAPILHHFSESIAGATTIRCFNQEN--RFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLIILVT 1134 (1333)
Q Consensus 1057 l~~~~~spl~~~~~Etl~G~~tIRaf~~e~--~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~ll~~~~~~~~~~~~~~ 1134 (1333)
......+.+.+++.|.+.|+++||+|+.++ ...+++.+..++..+................+++..+...+.+++...
T Consensus 182 ~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (555)
T TIGR01194 182 AARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADLHIIEILIFIAAENFGQLLFFLLIGCALFAAAM 261 (555)
T ss_pred HHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777899999999999999999999954 556777777777666555433333332222333322222211211111
Q ss_pred ccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCccc--CCCCC---CCCCCCcccEE
Q 000720 1135 LPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVI--KNSRP---SPEWPSSGKIE 1209 (1333)
Q Consensus 1135 ~~~~~~~~g~~gl~l~y~l~l~~~l~~~v~~~~~le~~~~SveRI~~~~~~p~E~~~~~--~~~~~---~~~wp~~G~I~ 1209 (1333)
.+.++.|.+..++.|...+..++..+...+.++++...|.+|+.++++.+.+++... ++... .+.....+.|+
T Consensus 262 --~~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 339 (555)
T TIGR01194 262 --FASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADFGERFNEPEPELELSDADNVLLLAHDKSVDSIE 339 (555)
T ss_pred --hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccccccCCCCceEE
Confidence 245777877778888888888888899999999999999999999976432221110 00000 01112347899
Q ss_pred EEEEEEEECCC---CCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCCCChHHHhhcCe
Q 000720 1210 LENLLVQYNPT---LPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLS 1286 (1333)
Q Consensus 1210 f~nVsf~Y~~~---~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~i~l~~LRs~is 1286 (1333)
|+||+|+|++. .+++|+|+||+|++||++||||+||||||||+++|.|+++|++|+|.+||+|+++++.+++|++++
T Consensus 340 ~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 419 (555)
T TIGR01194 340 LKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFS 419 (555)
T ss_pred EEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhhCc
Confidence 99999999643 235999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecccccccccchhhhcCCCCCCCHHHHHHHHHhCCCCcccccCC
Q 000720 1287 IIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVKISKLLTHKSYQCE 1331 (1333)
Q Consensus 1287 iVpQdp~LF~GTIR~NLdp~~~~sDeeI~~aL~~~~L~~~~~~~~ 1331 (1333)
+|||||++|++|+|+|+.| +.+|++++++++++++.+.+..+|
T Consensus 420 ~v~q~~~lf~~ti~~n~~~--~~~~~~~~~~~~~~~l~~~~~~lp 462 (555)
T TIGR01194 420 AIFADFHLFDDLIGPDEGE--HASLDNAQQYLQRLEIADKVKIED 462 (555)
T ss_pred EEccChhhhhhhhhccccc--chhHHHHHHHHHHcCCchhhcccc
Confidence 9999999999999999754 578999999999999998765543
No 68
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-45 Score=455.90 Aligned_cols=196 Identities=23% Similarity=0.281 Sum_probs=157.5
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC---------
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g--------- 659 (1333)
.++++|++++|+. .++++| ||++++||+++|+||||||||||+++|+|+.+|++|++ .++|
T Consensus 5 ~l~~~~l~~~~~~--------~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i-~~~g~~i~~~~~~ 75 (510)
T PRK09700 5 YISMAGIGKSFGP--------VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTI-TINNINYNKLDHK 75 (510)
T ss_pred eEEEeeeEEEcCC--------eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEE-EECCEECCCCCHH
Confidence 4899999999953 358999 99999999999999999999999999999999999986 5554
Q ss_pred -----eEEEEcCCCCCC-CCCHHHHhccCCcC----------CHH----HHHHHHHHcccchHHHhhcCCCccccCCCCC
Q 000720 660 -----KKAYVPQSSWIQ-TGTIRENILFGKDM----------RQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGI 719 (1333)
Q Consensus 660 -----~iayv~Q~~~i~-~~Tv~enI~~g~~~----------~~~----~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~ 719 (1333)
.++|++|++.++ +.|++||+.++... +.. +..+.++.+++ ....+++..
T Consensus 76 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl-----------~~~~~~~~~ 144 (510)
T PRK09700 76 LAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGL-----------KVDLDEKVA 144 (510)
T ss_pred HHHHCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCC-----------CCCcccchh
Confidence 389999998654 56999999876421 111 11122222222 122356788
Q ss_pred CCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeCCeEE
Q 000720 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIE 798 (1333)
Q Consensus 720 ~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~ 798 (1333)
+||||||||++||||++.+|+++||||||++||+.+.+.+.+.+.+...+|+|||++|||++++.. ||++++|++|+++
T Consensus 145 ~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~ 224 (510)
T PRK09700 145 NLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSV 224 (510)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEe
Confidence 999999999999999999999999999999999999888876544433458999999999999865 9999999999998
Q ss_pred EccChHH
Q 000720 799 QSGKYED 805 (1333)
Q Consensus 799 ~~g~~~~ 805 (1333)
+.|++++
T Consensus 225 ~~g~~~~ 231 (510)
T PRK09700 225 CSGMVSD 231 (510)
T ss_pred eecchhh
Confidence 7765543
No 69
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=3.9e-45 Score=492.83 Aligned_cols=190 Identities=21% Similarity=0.242 Sum_probs=150.0
Q ss_pred cccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCC----cCCCCcEEEECC------------eEEEEcCCCC-CCC
Q 000720 611 TIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEI----PRISGAAIKVHG------------KKAYVPQSSW-IQT 672 (1333)
Q Consensus 611 ~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~----~~~~G~~i~~~g------------~iayv~Q~~~-i~~ 672 (1333)
+.+|+| |+.+++||+++|+|||||||||||++|+|.. +|.+|++ .++| .++|++|++. +++
T Consensus 74 ~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I-~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~ 152 (1394)
T TIGR00956 74 FDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVI-TYDGITPEEIKKHYRGDVVYNAETDVHFPH 152 (1394)
T ss_pred ceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEE-EECCEehHHHHhhcCceeEEeccccccCCC
Confidence 468999 9999999999999999999999999999986 4688986 6654 3799999875 456
Q ss_pred CCHHHHhccCCc----------CCHHHHH-----HHHHHcccchHHHhhcCCCccccCC-CCCCCChHHHHHHHHHHHHc
Q 000720 673 GTIRENILFGKD----------MRQSFYE-----EVLEGCALNQDIEMWADGDLSVVGE-RGINLSGGQKQRIQLARAVY 736 (1333)
Q Consensus 673 ~Tv~enI~~g~~----------~~~~~~~-----~v~~~~~l~~d~~~~~~g~~t~ig~-~g~~LSGGQkqRv~LARAl~ 736 (1333)
.||+||+.|+.. ..++.+. ++++..++. +-.+|.+|+ ....|||||||||+||||++
T Consensus 153 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-------~~~~t~vg~~~~~~LSGGerkRvsIA~aL~ 225 (1394)
T TIGR00956 153 LTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLS-------HTRNTKVGNDFVRGVSGGERKRVSIAEASL 225 (1394)
T ss_pred CCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcc-------cccCceeCCCcCCCCCcccchHHHHHHHHH
Confidence 799999998532 1122111 122323322 223455653 56789999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEecCch-hhh-hcCCEEEEEeCCeEEEccChHHHHh
Q 000720 737 SNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQL-EFL-DAADLVLVMKDGKIEQSGKYEDLIA 808 (1333)
Q Consensus 737 ~~~~illLDEP~saLD~~~~~~l~~~~~~~~~-~~~TvIlvtH~~-~~l-~~aD~i~vl~~G~i~~~g~~~~l~~ 808 (1333)
.+|++++|||||+|||+.++.++.+.+.+... .|+|+|+++||+ +.+ +.+|+|++|++|++++.|+.+++.+
T Consensus 226 ~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~~ 300 (1394)
T TIGR00956 226 GGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQ 300 (1394)
T ss_pred hCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHHH
Confidence 99999999999999999999988875444333 389999999997 455 5699999999999999999988743
No 70
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8e-46 Score=416.23 Aligned_cols=422 Identities=19% Similarity=0.289 Sum_probs=322.3
Q ss_pred HHHHhhHHHHHHhccc--ccccchhhHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Q 000720 905 ALQMGSNYWIAWATDE--KRKVSREQLIGVFIFLSG------GSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPIS 976 (1333)
Q Consensus 905 ~~~~~~~~wl~~~~~~--~~~~~~~~~l~vy~~l~~------~~~i~~~~~~~~~~~~~~~~s~~L~~~ll~~il~ap~~ 976 (1333)
......+...+|..+. .|..........|+++.+ +++++.-+|+++...+..-+.+.+-.++|+|+....+.
T Consensus 229 li~~~~pi~~k~iv~~ltap~~~~~~~~~~~v~L~flqg~gtgsG~~~nlRtfLWi~VqQyttR~ie~~lfrHlh~LSlr 308 (790)
T KOG0056|consen 229 LINVSLPILSKWIVDELTAPDTFQYSLVFLYVFLKFLQGGGTGSGFLNNLRTFLWIPVQQYTTREIETELFRHLHNLSLR 308 (790)
T ss_pred HHhhhhHHhHHHHHHhhcCcchhhHHHHHHHHHHHHHhcCCccccchhhhheeEEEEhhHhHHHHHHHHHHHHHHhhcee
Confidence 3344444444444432 222223334445555433 34667778888888889999999999999999999999
Q ss_pred cccccCcchhHHHHhccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 977 FFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMS-QAAWQVFPLFLVILGISIWYQAYYITTARELA 1055 (1333)
Q Consensus 977 fFd~tp~GrIlnRfs~Di~~vd~~l~~~l~~~~~~~~~~l~~ivv~~-~~~~~l~lv~ipl~~~~~~~~~~y~~~srel~ 1055 (1333)
|.-...+|+.+.-+.+-.+.+. .+.....++...++-+...++..+ ..+|++.+++..+..+|.+.......--.+.+
T Consensus 309 wHL~rrtGeVLrvmdrGtssvt-ll~yvVF~i~PtllDl~va~vYF~~~Fn~wFgLIVfl~m~lY~~~Ti~iTeWRTk~r 387 (790)
T KOG0056|consen 309 WHLNRRTGEVLRVMDRGTSSVT-LLEYVVFQIGPTLLDLGVAMVYFFIKFNIWFGLIVFLMMLLYCYVTIKITEWRTKAR 387 (790)
T ss_pred eeecccccceeehhccCcchhh-HHHHHHhhcccHHHHhhhhhhhhhhhHhHHHHHHHHHHHHHHhheeeeeehhhHHHH
Confidence 9999999998888877777666 555555555555555555555433 46788888777766666543322111112233
Q ss_pred HHHhHhhchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh
Q 000720 1056 RMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLIIL-VT 1134 (1333)
Q Consensus 1056 rl~~~~~spl~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~ll~~~~~~~~~~~~-~~ 1134 (1333)
|....+...-.+.-.+++-+-.|+|-|++|+...++|.+.++.+++.-++....-..+...-+.+.++......++. ..
T Consensus 388 R~Mn~~~nesrAr~vDsllNFETVKyy~Ae~yEverYreAil~Yqk~E~ks~~sLnfLN~~Qn~Ii~lgll~gsll~aY~ 467 (790)
T KOG0056|consen 388 RKMNNSWNESRARQVDSLLNFETVKYYNAEDYEVERYREAILKYQKQEWKSLASLNFLNIVQNGIIGLGLLAGSLLCAYR 467 (790)
T ss_pred HHhhhhhhhhhhhhhhhhhcchhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHhhhhheeeee
Confidence 33334444445667899999999999999999999999999999998887776666665555554444333222222 22
Q ss_pred ccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCcccCCCCCCCCCCCcccEEEEEEE
Q 000720 1135 LPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELENLL 1214 (1333)
Q Consensus 1135 ~~~~~~~~g~~gl~l~y~l~l~~~l~~~v~~~~~le~~~~SveRI~~~~~~p~E~~~~~~~~~~~~~wp~~G~I~f~nVs 1214 (1333)
...+..+.|...+..+|.+++.++++|+-..+..++++.+-.||+.+.++.++|- .+.+..++---.+|.|+|+||+
T Consensus 468 Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiDmEnmfdllkee~eV---vd~P~a~pl~~~~G~i~fsnvt 544 (790)
T KOG0056|consen 468 VTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFIDMENMFDLLKEEPEV---VDLPGAPPLKVTQGKIEFSNVT 544 (790)
T ss_pred eeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhhhHHHHHHHhhcCchh---hcCCCCCCccccCCeEEEEEeE
Confidence 2345677888889999999999999999999999999999999999998755543 2322233333457999999999
Q ss_pred EEECCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCCCChHHHhhcCeEecccccc
Q 000720 1215 VQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPML 1294 (1333)
Q Consensus 1215 f~Y~~~~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~i~l~~LRs~isiVpQdp~L 1294 (1333)
|.|.|+.| ||+||||+++||+.||+||+||+||||++.+||||||.++|+|.|||+||+.+..++||++||+||||.+|
T Consensus 545 F~Y~p~k~-vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvL 623 (790)
T KOG0056|consen 545 FAYDPGKP-VLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVL 623 (790)
T ss_pred EecCCCCc-eeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcCcccCccee
Confidence 99999876 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhhcCCCC-CCCHHHHHHHHHhCCCCcccccCC
Q 000720 1295 FQGTVRTNLDPLE-QHSDQEIWEVKISKLLTHKSYQCE 1331 (1333)
Q Consensus 1295 F~GTIR~NLdp~~-~~sDeeI~~aL~~~~L~~~~~~~~ 1331 (1333)
|++||.+||.+.. .++|||+.+|.+.+++.|...+-|
T Consensus 624 FNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fP 661 (790)
T KOG0056|consen 624 FNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFP 661 (790)
T ss_pred ecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCc
Confidence 9999999998764 599999999999999999877755
No 71
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.5e-45 Score=461.81 Aligned_cols=206 Identities=21% Similarity=0.338 Sum_probs=162.4
Q ss_pred ccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC--------
Q 000720 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------- 659 (1333)
Q Consensus 589 ~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g-------- 659 (1333)
..++++|++++|.... ...+.+++ ||++++||+++|+||||||||||+++|+|+++|.+|.+ .++|
T Consensus 11 ~~l~v~~l~~~y~~~~----~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i-~~~g~~~~~~~~ 85 (623)
T PRK10261 11 DVLAVENLNIAFMQEQ----QKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLV-QCDKMLLRRRSR 85 (623)
T ss_pred ceEEEeceEEEecCCC----CceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEE-EECCEEeccccc
Confidence 4699999999996430 12468999 99999999999999999999999999999999999975 3322
Q ss_pred -------------------eEEEEcCCC--CC-CCCCHHHHhccCCcC----CH----HHHHHHHHHcccchHHHhhcCC
Q 000720 660 -------------------KKAYVPQSS--WI-QTGTIRENILFGKDM----RQ----SFYEEVLEGCALNQDIEMWADG 709 (1333)
Q Consensus 660 -------------------~iayv~Q~~--~i-~~~Tv~enI~~g~~~----~~----~~~~~v~~~~~l~~d~~~~~~g 709 (1333)
++|||+|+| .+ +..||+||+.++... .. ++..++++..++.+.
T Consensus 86 ~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~------- 158 (623)
T PRK10261 86 QVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEA------- 158 (623)
T ss_pred cccccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCCh-------
Confidence 489999998 34 457999999875321 11 122233333333110
Q ss_pred CccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hC-CCeEEEecCchhhhh-cC
Q 000720 710 DLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-LS-QKTVLYTTHQLEFLD-AA 786 (1333)
Q Consensus 710 ~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~-~~-~~TvIlvtH~~~~l~-~a 786 (1333)
.....+++.+|||||||||+|||||+.+|+++||||||++||+.+++.+.+. ++.+ .+ |+|||+||||++.+. .|
T Consensus 159 -~~~~~~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~l-l~~l~~~~g~tvi~itHdl~~~~~~a 236 (623)
T PRK10261 159 -QTILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQL-IKVLQKEMSMGVIFITHDMGVVAEIA 236 (623)
T ss_pred -hhHHhCCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHH-HHHHHHhcCCEEEEEcCCHHHHHHhC
Confidence 1224567889999999999999999999999999999999999998888764 4444 33 799999999999875 49
Q ss_pred CEEEEEeCCeEEEccChHHHHh
Q 000720 787 DLVLVMKDGKIEQSGKYEDLIA 808 (1333)
Q Consensus 787 D~i~vl~~G~i~~~g~~~~l~~ 808 (1333)
|+|++|++|++++.|+++++..
T Consensus 237 dri~vl~~G~i~~~g~~~~~~~ 258 (623)
T PRK10261 237 DRVLVMYQGEAVETGSVEQIFH 258 (623)
T ss_pred CEEEEeeCCeecccCCHHHhhc
Confidence 9999999999999998877643
No 72
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.3e-45 Score=452.48 Aligned_cols=197 Identities=20% Similarity=0.294 Sum_probs=155.7
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcC--CCCcEEEECC-------
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR--ISGAAIKVHG------- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~--~~G~~i~~~g------- 659 (1333)
.++++|++++|+. .+++++ ||++++||+++|+||||||||||+++|+|+++| ++|++ .++|
T Consensus 5 ~l~~~nl~~~~~~--------~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i-~~~g~~~~~~~ 75 (506)
T PRK13549 5 LLEMKNITKTFGG--------VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEI-IFEGEELQASN 75 (506)
T ss_pred eEEEeeeEEEeCC--------eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEE-EECCEECCCCC
Confidence 5899999999953 368999 999999999999999999999999999999986 78986 5554
Q ss_pred -------eEEEEcCCCCCC-CCCHHHHhccCCcC------CHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHH
Q 000720 660 -------KKAYVPQSSWIQ-TGTIRENILFGKDM------RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (1333)
Q Consensus 660 -------~iayv~Q~~~i~-~~Tv~enI~~g~~~------~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQ 725 (1333)
.++|++|++.++ +.|++||+.++... +.+...+.++ +-++.+ |.....+.+..+|||||
T Consensus 76 ~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~-----~~l~~~--~l~~~~~~~~~~LSgGq 148 (506)
T PRK13549 76 IRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQ-----KLLAQL--KLDINPATPVGNLGLGQ 148 (506)
T ss_pred HHHHHHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHH-----HHHHHc--CCCCCcccchhhCCHHH
Confidence 389999998655 56999999987432 1111111111 111111 11123356778999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeCCeEEEccC
Q 000720 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGK 802 (1333)
Q Consensus 726 kqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~~g~ 802 (1333)
|||++||||++.+|+++||||||++||+..+..+.+.+.+...+++|+|++|||++++.. ||+|++|++|+++..|+
T Consensus 149 kqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~ 226 (506)
T PRK13549 149 QQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRP 226 (506)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecc
Confidence 999999999999999999999999999999888876544433468899999999999864 99999999999987654
No 73
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=1e-44 Score=451.54 Aligned_cols=204 Identities=26% Similarity=0.376 Sum_probs=158.1
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcC-----CCCcEEEECC----
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR-----ISGAAIKVHG---- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~-----~~G~~i~~~g---- 659 (1333)
.++++|++++|+... ...+++++ ||++++||+++|+||||||||||+++|+|+++| ++|++ .++|
T Consensus 5 ~l~~~~l~~~~~~~~----~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i-~~~g~~i~ 79 (529)
T PRK15134 5 LLAIENLSVAFRQQQ----TVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDI-RFHGESLL 79 (529)
T ss_pred eEEEeceEEEecCCC----CceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEE-EECCEecc
Confidence 489999999996420 12468999 999999999999999999999999999999986 68875 4432
Q ss_pred -------------eEEEEcCCCC--C-CCCCHHHHhccCC----cCCH----HHHHHHHHHcccchHHHhhcCCCccccC
Q 000720 660 -------------KKAYVPQSSW--I-QTGTIRENILFGK----DMRQ----SFYEEVLEGCALNQDIEMWADGDLSVVG 715 (1333)
Q Consensus 660 -------------~iayv~Q~~~--i-~~~Tv~enI~~g~----~~~~----~~~~~v~~~~~l~~d~~~~~~g~~t~ig 715 (1333)
++||++|+|. + ...|++||+.++. .... ++.+++++.+++.+.. ....
T Consensus 80 ~~~~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~--------~~~~ 151 (529)
T PRK15134 80 HASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAA--------KRLT 151 (529)
T ss_pred cCCHHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChH--------HHHh
Confidence 4899999974 3 3469999987431 1111 2223344444442100 1124
Q ss_pred CCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEecCchhhhh-cCCEEEEEe
Q 000720 716 ERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS-QKTVLYTTHQLEFLD-AADLVLVMK 793 (1333)
Q Consensus 716 ~~g~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~-~~TvIlvtH~~~~l~-~aD~i~vl~ 793 (1333)
+++.+|||||||||+|||||+.+|+++||||||++||+..++.+.+.+.+...+ ++|||+||||++.+. .||+|++|+
T Consensus 152 ~~~~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~ 231 (529)
T PRK15134 152 DYPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQ 231 (529)
T ss_pred hCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEE
Confidence 678899999999999999999999999999999999999988887644343333 799999999999886 499999999
Q ss_pred CCeEEEccChHHH
Q 000720 794 DGKIEQSGKYEDL 806 (1333)
Q Consensus 794 ~G~i~~~g~~~~l 806 (1333)
+|++++.|+++++
T Consensus 232 ~G~i~~~g~~~~~ 244 (529)
T PRK15134 232 NGRCVEQNRAATL 244 (529)
T ss_pred CCEEEEeCCHHHH
Confidence 9999988876554
No 74
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=1.4e-42 Score=434.23 Aligned_cols=422 Identities=14% Similarity=0.073 Sum_probs=326.2
Q ss_pred HHHHHHHHHHHHhhHHHHHHhccccc-ccc---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 000720 897 LLCQVLFQALQMGSNYWIAWATDEKR-KVS---REQLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFR 972 (1333)
Q Consensus 897 ll~~~l~~~~~~~~~~wl~~~~~~~~-~~~---~~~~l~vy~~l~~~~~i~~~~~~~~~~~~~~~~s~~L~~~ll~~il~ 972 (1333)
+++.++..++.+..++.++...|... ..+ ...++.+++++.++..++.+++.++....+.+...+++.++++++++
T Consensus 12 ~~~~~~~~~~~l~~p~~~~~iid~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~ 91 (544)
T TIGR01842 12 GLFSFVINILMLAPPLYMLQVYDRVLTSGSVPTLLMLTVLALGLYLFLGLLDALRSFVLVRIGEKLDGALNQPIFAASFS 91 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33445555666666776665554211 111 12234445555566777888888899999999999999999999999
Q ss_pred CccccccccCcchhHHHHhccHHHHHhHHHH-HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 973 APISFFDSTPSSRILNRCSTDQSTVDTDIPY-RLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQAYYITTA 1051 (1333)
Q Consensus 973 ap~~fFd~tp~GrIlnRfs~Di~~vd~~l~~-~l~~~~~~~~~~l~~ivv~~~~~~~l~lv~ipl~~~~~~~~~~y~~~s 1051 (1333)
.|+. ..|..++++++|++.+++.+.. .+..++..++.++ .+++++..+|+++++++..+++.+.+..+..+..
T Consensus 92 ~~~~-----~~~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~l~li~l~~~~l~~~i~~~~~~~~ 165 (544)
T TIGR01842 92 ATLR-----RGKIDGLQALRDLDQLRQFLTGPGLFAFFDAPWMPI-YLLVCFLLHPWIGILALGGAVVLVGLALLNNRAT 165 (544)
T ss_pred Cccc-----CccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 9984 2367789999999999988776 4555555555444 3467788899887766555555555555555555
Q ss_pred HHHHHHHhHhhchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 1052 RELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLII 1131 (1333)
Q Consensus 1052 rel~rl~~~~~spl~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~ll~~~~~~~~~~~ 1131 (1333)
++..+...+..+...+++.|+++|+.+||+|+.|+++.+++.+..++..+.................++..+...++..+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (544)
T TIGR01842 166 KKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKYFRIVLQSLVLGL 245 (544)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666677788889999999999999999999999999999999988877776655555544444444443332222222
Q ss_pred H-HhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCcccCCCCCCCCCCCcccEEE
Q 000720 1132 L-VTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIEL 1210 (1333)
Q Consensus 1132 ~-~~~~~~~~~~g~~gl~l~y~l~l~~~l~~~v~~~~~le~~~~SveRI~~~~~~p~E~~~~~~~~~~~~~wp~~G~I~f 1210 (1333)
+ .....+.+++|.+..++.+...+..++..+...+.++.....+.+|+.++++.|+|.+. ....+ +..+.|+|
T Consensus 246 g~~l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~---~~~~~---~~~~~i~~ 319 (544)
T TIGR01842 246 GAYLAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDP---AMPLP---EPEGHLSV 319 (544)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccC---CCCCC---CCCCeEEE
Confidence 2 22346778999888888888888889999999999999999999999999987655321 11111 23578999
Q ss_pred EEEEEEECCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCCCChHHHhhcCeEecc
Q 000720 1211 ENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQ 1290 (1333)
Q Consensus 1211 ~nVsf~Y~~~~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~i~l~~LRs~isiVpQ 1290 (1333)
+||+|+|+++.+++|+|+||+|+|||++||||+||||||||+++|.|+++|++|+|.+||+|+.+++.+++|+++++|||
T Consensus 320 ~~v~~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q 399 (544)
T TIGR01842 320 ENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQ 399 (544)
T ss_pred EEEEEEcCCCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhheEEecC
Confidence 99999997655569999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccchhhhcCCCC-CCCHHHHHHHHHhCCCCcccccC
Q 000720 1291 DPMLFQGTVRTNLDPLE-QHSDQEIWEVKISKLLTHKSYQC 1330 (1333)
Q Consensus 1291 dp~LF~GTIR~NLdp~~-~~sDeeI~~aL~~~~L~~~~~~~ 1330 (1333)
||++|+|||||||..++ +++|++++++++++++++...+.
T Consensus 400 ~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l 440 (544)
T TIGR01842 400 DVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRL 440 (544)
T ss_pred CcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhC
Confidence 99999999999998654 48999999999999988765443
No 75
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=2e-42 Score=463.73 Aligned_cols=201 Identities=23% Similarity=0.349 Sum_probs=166.7
Q ss_pred ccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC--------
Q 000720 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------- 659 (1333)
Q Consensus 589 ~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g-------- 659 (1333)
..|+++|+++.|+.+ .+.++++ |+++++||+++|+||||||||||+++|+|+.+|++|++ .++|
T Consensus 927 ~~L~I~nLsK~y~~~------~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I-~i~G~dI~~~~~ 999 (2272)
T TIGR01257 927 PGVCVKNLVKIFEPS------GRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTV-LVGGKDIETNLD 999 (2272)
T ss_pred ceEEEEeEEEEecCC------CceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEE-EECCEECcchHH
Confidence 469999999999632 2468999 99999999999999999999999999999999999986 6655
Q ss_pred ----eEEEEcCCCCCC-CCCHHHHhccCCcC---CH----HHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHH
Q 000720 660 ----KKAYVPQSSWIQ-TGTIRENILFGKDM---RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQ 727 (1333)
Q Consensus 660 ----~iayv~Q~~~i~-~~Tv~enI~~g~~~---~~----~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkq 727 (1333)
.+|||||++.++ ..||+||+.|+... .. ++.++.++.+++. ...+++..+|||||||
T Consensus 1000 ~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~-----------~~~~~~~~~LSGGqKQ 1068 (2272)
T TIGR01257 1000 AVRQSLGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLH-----------HKRNEEAQDLSGGMQR 1068 (2272)
T ss_pred HHhhcEEEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc-----------hhhcCChhhCCHHHHH
Confidence 379999998765 56999999875321 11 1223333333332 2335678899999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeCCeEEEccChHHH
Q 000720 728 RIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDL 806 (1333)
Q Consensus 728 Rv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~~g~~~~l 806 (1333)
|++||||++.+|+++||||||+|||+..++++.+.+ +...+|+|||++||+++.++. ||+|++|++|+++..|+.+++
T Consensus 1069 RLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL-~~l~~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~~~L 1147 (2272)
T TIGR01257 1069 KLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLL-LKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFL 1147 (2272)
T ss_pred HHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHH-HHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 999999999999999999999999999988887654 444578999999999999865 999999999999999999988
Q ss_pred Hh
Q 000720 807 IA 808 (1333)
Q Consensus 807 ~~ 808 (1333)
.+
T Consensus 1148 k~ 1149 (2272)
T TIGR01257 1148 KN 1149 (2272)
T ss_pred HH
Confidence 65
No 76
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=1.6e-44 Score=447.25 Aligned_cols=192 Identities=22% Similarity=0.357 Sum_probs=152.2
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcC--CCCcEEEECC--------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR--ISGAAIKVHG-------- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~--~~G~~i~~~g-------- 659 (1333)
++++|++++|+. .+++++ ||++++||+++|+||||||||||+++|+|+.+| ++|++ .++|
T Consensus 2 l~i~~l~~~~~~--------~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i-~~~g~~~~~~~~ 72 (500)
T TIGR02633 2 LEMKGIVKTFGG--------VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEI-YWSGSPLKASNI 72 (500)
T ss_pred EEEEeEEEEeCC--------eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEE-EECCEECCCCCH
Confidence 688999999953 358999 999999999999999999999999999999986 78986 5554
Q ss_pred ------eEEEEcCCCCCC-CCCHHHHhccCCcC-------CHH----HHHHHHHHcccchHHHhhcCCCccccCCCCCCC
Q 000720 660 ------KKAYVPQSSWIQ-TGTIRENILFGKDM-------RQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGINL 721 (1333)
Q Consensus 660 ------~iayv~Q~~~i~-~~Tv~enI~~g~~~-------~~~----~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~L 721 (1333)
.++|++|++.++ +.|++||+.++... +.+ +.+++++.+++... ....+..+|
T Consensus 73 ~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~L 142 (500)
T TIGR02633 73 RDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDAD----------NVTRPVGDY 142 (500)
T ss_pred HHHHhCCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCC----------cccCchhhC
Confidence 389999998654 56999999886432 111 11222222222100 012457899
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeCCeEEEc
Q 000720 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQS 800 (1333)
Q Consensus 722 SGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~~ 800 (1333)
|||||||++||||++.+|+++||||||++||+...+.+.+.+.+...+|+|||++|||++++.. ||+|++|++|+++..
T Consensus 143 SgG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~ 222 (500)
T TIGR02633 143 GGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVAT 222 (500)
T ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeee
Confidence 9999999999999999999999999999999999888877544433457899999999999865 999999999998754
Q ss_pred c
Q 000720 801 G 801 (1333)
Q Consensus 801 g 801 (1333)
|
T Consensus 223 ~ 223 (500)
T TIGR02633 223 K 223 (500)
T ss_pred c
Confidence 3
No 77
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=2.4e-44 Score=445.35 Aligned_cols=193 Identities=22% Similarity=0.316 Sum_probs=155.5
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC---------
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g--------- 659 (1333)
.++++|++++|+. .+++++ ||++++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 4 ~i~~~~l~~~~~~--------~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i-~~~g~~~~~~~~~ 74 (501)
T PRK10762 4 LLQLKGIDKAFPG--------VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSI-LYLGKEVTFNGPK 74 (501)
T ss_pred eEEEeeeEEEeCC--------eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEE-EECCEECCCCCHH
Confidence 4889999999953 358999 99999999999999999999999999999999999986 5554
Q ss_pred -----eEEEEcCCCCCC-CCCHHHHhccCCcC-------CHH----HHHHHHHHcccchHHHhhcCCCccccCCCCCCCC
Q 000720 660 -----KKAYVPQSSWIQ-TGTIRENILFGKDM-------RQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGINLS 722 (1333)
Q Consensus 660 -----~iayv~Q~~~i~-~~Tv~enI~~g~~~-------~~~----~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LS 722 (1333)
.++|++|++.++ +.|++||+.++... +.. +.++.++.+++. ...+.+..+||
T Consensus 75 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS 143 (501)
T PRK10762 75 SSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLR-----------FSSDKLVGELS 143 (501)
T ss_pred HHHhCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCC-----------CCccCchhhCC
Confidence 379999998654 56999999986432 111 112222222221 12346778999
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeCCeEEEcc
Q 000720 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSG 801 (1333)
Q Consensus 723 GGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~~g 801 (1333)
||||||++||||++.+|+++||||||++||+.++..+.+.+.+...+++|+|++|||++++.. ||+|++|++|+++..|
T Consensus 144 gG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~ 223 (501)
T PRK10762 144 IGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAER 223 (501)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEec
Confidence 999999999999999999999999999999999888876444433457899999999999864 9999999999998755
Q ss_pred C
Q 000720 802 K 802 (1333)
Q Consensus 802 ~ 802 (1333)
+
T Consensus 224 ~ 224 (501)
T PRK10762 224 E 224 (501)
T ss_pred C
Confidence 4
No 78
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=1.8e-44 Score=427.11 Aligned_cols=205 Identities=26% Similarity=0.347 Sum_probs=161.2
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCC----CCcEEEECC-----
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRI----SGAAIKVHG----- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~----~G~~i~~~g----- 659 (1333)
-++++|.+.+|.... .....++| ||++.+||++||+|++||||||+.++|.|++++. +|++ .++|
T Consensus 5 lL~V~nL~v~~~~~~----~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I-~~~g~dl~~ 79 (539)
T COG1123 5 LLEVENLTVEFATDG----GRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEV-ILDGRDLLG 79 (539)
T ss_pred eEEEeceEEEEecCC----cceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEE-EECCcchhc
Confidence 688999998887651 22468999 9999999999999999999999999999999876 6775 4444
Q ss_pred ------------eEEEEcCCCC-CC--CCCHHHHhcc----CCcC-CHHH---HHHHHHHcccchHHHhhcCCCccccCC
Q 000720 660 ------------KKAYVPQSSW-IQ--TGTIRENILF----GKDM-RQSF---YEEVLEGCALNQDIEMWADGDLSVVGE 716 (1333)
Q Consensus 660 ------------~iayv~Q~~~-i~--~~Tv~enI~~----g~~~-~~~~---~~~v~~~~~l~~d~~~~~~g~~t~ig~ 716 (1333)
++||+||+|+ .+ -.||.+-|.= .... .++. -.+.++..++.+... . +.
T Consensus 80 l~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~-------~--~~ 150 (539)
T COG1123 80 LSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPER-------R--DR 150 (539)
T ss_pred CCHHHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhh-------h--cc
Confidence 4799999985 23 3577666642 2211 1222 223334444432211 1 46
Q ss_pred CCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCeEEEecCchhhhhc-CCEEEEEeC
Q 000720 717 RGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-LSQKTVLYTTHQLEFLDA-ADLVLVMKD 794 (1333)
Q Consensus 717 ~g~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~-~~~~TvIlvtH~~~~l~~-aD~i~vl~~ 794 (1333)
.+.+||||||||+.||+||+.+|+++|+||||+|||+.++.+|.+.+.... ..|.++|+||||++.+.+ ||+|+||++
T Consensus 151 yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~ 230 (539)
T COG1123 151 YPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYK 230 (539)
T ss_pred CCcccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEEC
Confidence 789999999999999999999999999999999999999999987544333 247899999999999865 999999999
Q ss_pred CeEEEccChHHHHh
Q 000720 795 GKIEQSGKYEDLIA 808 (1333)
Q Consensus 795 G~i~~~g~~~~l~~ 808 (1333)
|++++.|+.+++++
T Consensus 231 G~iVE~G~~~~i~~ 244 (539)
T COG1123 231 GEIVETGPTEEILS 244 (539)
T ss_pred CEEEEecCHHHHHh
Confidence 99999999999986
No 79
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=2e-44 Score=448.25 Aligned_cols=193 Identities=23% Similarity=0.343 Sum_probs=152.7
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCC--cCCCCcEEEEC---------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEI--PRISGAAIKVH--------- 658 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~--~~~~G~~i~~~--------- 658 (1333)
++++|++++|+. .+++++ ||++++||+++|+||||||||||+++|+|+. +|++|++ .++
T Consensus 1 l~~~~l~~~~~~--------~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i-~~~~~~~~~~~~ 71 (520)
T TIGR03269 1 IEVKNLTKKFDG--------KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRI-IYHVALCEKCGY 71 (520)
T ss_pred CEEEEEEEEECC--------eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEE-EEeccccccccc
Confidence 468899999853 358999 9999999999999999999999999999997 6899986 442
Q ss_pred -------------------------------------CeEEEEcCC-CCCC-CCCHHHHhccCCc---CCH----HHHHH
Q 000720 659 -------------------------------------GKKAYVPQS-SWIQ-TGTIRENILFGKD---MRQ----SFYEE 692 (1333)
Q Consensus 659 -------------------------------------g~iayv~Q~-~~i~-~~Tv~enI~~g~~---~~~----~~~~~ 692 (1333)
..++|++|+ +.++ ..|++||+.++.. ... ++..+
T Consensus 72 ~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~ 151 (520)
T TIGR03269 72 VERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVD 151 (520)
T ss_pred cccccccccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 137999997 4444 5699999987532 111 12233
Q ss_pred HHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCC
Q 000720 693 VLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQK 771 (1333)
Q Consensus 693 v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~-~~~ 771 (1333)
+++.+++.+ ..++++.+|||||||||+||||++.+|+++||||||++||+.+.+.+.+.+.+... .++
T Consensus 152 ~l~~~gl~~-----------~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~ 220 (520)
T TIGR03269 152 LIEMVQLSH-----------RITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGI 220 (520)
T ss_pred HHHHcCChh-----------hhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCc
Confidence 344444321 22456789999999999999999999999999999999999998888765444333 378
Q ss_pred eEEEecCchhhhhc-CCEEEEEeCCeEEEccCh
Q 000720 772 TVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKY 803 (1333)
Q Consensus 772 TvIlvtH~~~~l~~-aD~i~vl~~G~i~~~g~~ 803 (1333)
|||+||||++++.. ||+|++|++|+++..|++
T Consensus 221 tviivtHd~~~~~~~~d~i~~l~~G~i~~~g~~ 253 (520)
T TIGR03269 221 SMVLTSHWPEVIEDLSDKAIWLENGEIKEEGTP 253 (520)
T ss_pred EEEEEeCCHHHHHHhcCEEEEEeCCEEeeecCH
Confidence 99999999999864 999999999998765543
No 80
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=6.1e-44 Score=442.01 Aligned_cols=197 Identities=26% Similarity=0.386 Sum_probs=161.7
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC---------
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g--------- 659 (1333)
.++++|++++|+. ..++++ ||++++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 11 ~l~~~~l~~~~~~--------~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i-~~~g~~~~~~~~~ 81 (510)
T PRK15439 11 LLCARSISKQYSG--------VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTL-EIGGNPCARLTPA 81 (510)
T ss_pred eEEEEeEEEEeCC--------ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE-EECCEECCCCCHH
Confidence 5999999999963 358999 99999999999999999999999999999999999986 6654
Q ss_pred -----eEEEEcCCCCCC-CCCHHHHhccCCcCCH---HHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHH
Q 000720 660 -----KKAYVPQSSWIQ-TGTIRENILFGKDMRQ---SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQ 730 (1333)
Q Consensus 660 -----~iayv~Q~~~i~-~~Tv~enI~~g~~~~~---~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~ 730 (1333)
.++|++|++.++ +.|++||+.++..... ++.++.++..++. ...+.+..+||||||||++
T Consensus 82 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSgG~~qrv~ 150 (510)
T PRK15439 82 KAHQLGIYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQ-----------LDLDSSAGSLEVADRQIVE 150 (510)
T ss_pred HHHhCCEEEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCC-----------ccccCChhhCCHHHHHHHH
Confidence 379999998755 5699999998753222 2223333333332 1234677899999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhh-cCCEEEEEeCCeEEEccChHHH
Q 000720 731 LARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKYEDL 806 (1333)
Q Consensus 731 LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~-~aD~i~vl~~G~i~~~g~~~~l 806 (1333)
|||||+.+|+++||||||++||+...+.+.+.+.+...+|+|||++|||++++. .||+|++|++|++++.|+++++
T Consensus 151 la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 227 (510)
T PRK15439 151 ILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADL 227 (510)
T ss_pred HHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHc
Confidence 999999999999999999999999988887754443345899999999999985 4999999999999988876554
No 81
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-43 Score=442.25 Aligned_cols=204 Identities=18% Similarity=0.271 Sum_probs=156.4
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC--eEEEEcCC
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--KKAYVPQS 667 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g--~iayv~Q~ 667 (1333)
|+++|++++|+. .+++++ ||+|++||+++|+||||||||||+++|+|+++|++|++ .+++ +++|++|+
T Consensus 2 l~i~~ls~~~~~--------~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i-~~~~~~~i~~~~q~ 72 (530)
T PRK15064 2 LSTANITMQFGA--------KPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNV-SLDPNERLGKLRQD 72 (530)
T ss_pred EEEEEEEEEeCC--------cEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE-EecCCCEEEEEecc
Confidence 688999999953 368999 99999999999999999999999999999999999996 6654 69999999
Q ss_pred CCCC-CCCHHHHhccCCcC-CH-------------------HHHHHHHHH-c---------ccchHHHhhcCCCccc-cC
Q 000720 668 SWIQ-TGTIRENILFGKDM-RQ-------------------SFYEEVLEG-C---------ALNQDIEMWADGDLSV-VG 715 (1333)
Q Consensus 668 ~~i~-~~Tv~enI~~g~~~-~~-------------------~~~~~v~~~-~---------~l~~d~~~~~~g~~t~-ig 715 (1333)
+.++ +.|++||+.++... .. ..+.+..+. + ...+-++.+ |.... ..
T Consensus 73 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~~~~~~ 150 (530)
T PRK15064 73 QFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGV--GIPEEQHY 150 (530)
T ss_pred CCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhC--CCChhHhc
Confidence 7654 56999999875310 00 000000000 0 000001111 11111 12
Q ss_pred CCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeC
Q 000720 716 ERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKD 794 (1333)
Q Consensus 716 ~~g~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~ 794 (1333)
....+||||||||++||||++.+|+++||||||++||+...+.+.+. +. ..++|||+||||++++.. ||+|++|++
T Consensus 151 ~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~-l~--~~~~tiiivsHd~~~~~~~~d~i~~l~~ 227 (530)
T PRK15064 151 GLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDV-LN--ERNSTMIIISHDRHFLNSVCTHMADLDY 227 (530)
T ss_pred CchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHH-HH--hCCCeEEEEeCCHHHHHhhcceEEEEeC
Confidence 45789999999999999999999999999999999999998877664 33 247899999999999865 999999999
Q ss_pred CeE-EEccChHHHHh
Q 000720 795 GKI-EQSGKYEDLIA 808 (1333)
Q Consensus 795 G~i-~~~g~~~~l~~ 808 (1333)
|++ .+.|+++++.+
T Consensus 228 g~i~~~~g~~~~~~~ 242 (530)
T PRK15064 228 GELRVYPGNYDEYMT 242 (530)
T ss_pred CEEEEecCCHHHHHH
Confidence 999 47899888764
No 82
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=5.2e-44 Score=441.72 Aligned_cols=196 Identities=21% Similarity=0.297 Sum_probs=158.4
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC---------
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g--------- 659 (1333)
-++++|++++|+.. .+|++ ||++++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 3 ~l~~~~l~~~~~~~--------~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i-~~~~~~~~~~~~~ 73 (490)
T PRK10938 3 SLQISQGTFRLSDT--------KTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGER-QSQFSHITRLSFE 73 (490)
T ss_pred eEEEEeEEEEcCCe--------eecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceE-EECCcccccCCHH
Confidence 37899999999643 48999 99999999999999999999999999999999999986 5543
Q ss_pred ----eEEEEcCCCCC---------CCCCHHHHhccCCcCCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHH
Q 000720 660 ----KKAYVPQSSWI---------QTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQK 726 (1333)
Q Consensus 660 ----~iayv~Q~~~i---------~~~Tv~enI~~g~~~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQk 726 (1333)
.++|++|++.. +..|++||+.++.. ..++.++.++..++.+ ..+.++.+||||||
T Consensus 74 ~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgG~~ 141 (490)
T PRK10938 74 QLQKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDEVK-DPARCEQLAQQFGITA-----------LLDRRFKYLSTGET 141 (490)
T ss_pred HHHHHhceeccCcchhhcccchhhccccHHHhcccchh-HHHHHHHHHHHcCCHh-----------hhhCCcccCCHHHH
Confidence 26899998642 14589999876421 2233444555444421 22467789999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeCCeEEEccChHH
Q 000720 727 QRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYED 805 (1333)
Q Consensus 727 qRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~~g~~~~ 805 (1333)
||++||||++.+|+++||||||++||+...+.+.+.+.+...+|+|+|++||+++.+.. ||+|++|++|+++..|++++
T Consensus 142 qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~ 221 (490)
T PRK10938 142 RKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREE 221 (490)
T ss_pred HHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999888877554433457899999999998865 99999999999998877655
Q ss_pred H
Q 000720 806 L 806 (1333)
Q Consensus 806 l 806 (1333)
+
T Consensus 222 ~ 222 (490)
T PRK10938 222 I 222 (490)
T ss_pred H
Confidence 4
No 83
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.8e-42 Score=397.53 Aligned_cols=390 Identities=19% Similarity=0.224 Sum_probs=313.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCcchhHHHHhccHHHHHhHHHHHHHHHHHHHHHH
Q 000720 936 LSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQL 1015 (1333)
Q Consensus 936 l~~~~~i~~~~~~~~~~~~~~~~s~~L~~~ll~~il~ap~~fFd~tp~GrIlnRfs~Di~~vd~~l~~~l~~~~~~~~~~ 1015 (1333)
+++...+.-++-.+..+....++-.++|.++|+++...+..-..+...|+++||+..|++.+|+..=..+.-.+..+...
T Consensus 67 ~aI~Rt~~RY~ERlvsH~AtfrvL~~lRv~~f~kl~p~sp~~~~r~r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~~~~ 146 (573)
T COG4987 67 LAILRTAARYVERLVSHDATFRVLSALRVRLFEKLEPLSPALLLRYRSGDLLNRLVADVDALDNLYLRVIAPAVVALVLI 146 (573)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCChHHHHhcChHhHHHHHHhhHHHHhhHHHHHHhhHHHHHHHH
Confidence 45555555666666777888999999999999999999999999999999999999999999999888888888888888
Q ss_pred HHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHhhchHHHHHHHHhcchHHHHhcccHHHHHHHHHH
Q 000720 1016 LSIIILMSQAAWQVFPLFL-VILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHS 1094 (1333)
Q Consensus 1016 l~~ivv~~~~~~~l~lv~i-pl~~~~~~~~~~y~~~srel~rl~~~~~spl~~~~~Etl~G~~tIRaf~~e~~f~~~~~~ 1094 (1333)
++..+.+.+.+|++.+.+. .++.+.+.+...+.+..|...+.-...++.+.+++.|-++|....+.||+++++.+.+.+
T Consensus 147 ~~~~i~L~f~~~~~Alll~~~ll~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l~~ 226 (573)
T COG4987 147 AVVTIGLSFFSIPLALLLGLILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALEA 226 (573)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHHHHH
Confidence 8888888888888766543 344444455555666777777777888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q 000720 1095 LIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLV-LIILVTLPRSAIDPSLAGLAATYGLNLNVLQAWVI-WNLCNVENK 1172 (1333)
Q Consensus 1095 ~~d~~~~~~~~~~~~~~wl~~rl~ll~~~~~~~~-~~~~~~~~~~~~~~g~~gl~l~y~l~l~~~l~~~v-~~~~~le~~ 1172 (1333)
.-+...+..........|-...+.++.++.+... ++.......|..+...+.+++.-.+.....+.-+. ..+.++...
T Consensus 227 ~e~~~~~~q~k~~~~~~~~~a~~~l~~g~~v~~~l~w~a~~~~~G~~~~~~aa~~ll~~f~~~eaf~~L~~~A~~~lgq~ 306 (573)
T COG4987 227 TEASWLKAQRKQARFTGLSDAILLLIAGLLVIGLLLWMAAQVGAGALAQPGAALALLVIFAALEAFEPLAPGAFQHLGQV 306 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCcchhHHHHHHHHHHHHHHHHhhhcchhHHHhhHH
Confidence 9999999999999999999999999888766633 33333233343332112122111122222222222 345677888
Q ss_pred hhHHHHHHHhhcCCCCCCcccCCCCCCCCCCCcc-cEEEEEEEEEECCCCCCccccceEEecCCcEEEEECCCCccHHHH
Q 000720 1173 MISVERILQFTNIPSEAPLVIKNSRPSPEWPSSG-KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTL 1251 (1333)
Q Consensus 1173 ~~SveRI~~~~~~p~E~~~~~~~~~~~~~wp~~G-~I~f~nVsf~Y~~~~p~VLk~Is~~I~~GekVgIVGrTGSGKSTL 1251 (1333)
..|.+|+.+..+.++|.... . +.-|..| .++++||+|+|+.+.++||+|+||++++||||||+|||||||||+
T Consensus 307 ~~Sa~Rl~~i~~q~~e~~~~---~---~~~~~~~~~l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTl 380 (573)
T COG4987 307 IASARRLNDILDQKPEVTFP---D---EQTATTGQALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTL 380 (573)
T ss_pred HHHHHHHhhhccCCcccCCC---c---cccCCccceeeeccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHHH
Confidence 89999999988766664321 1 1112222 799999999999888889999999999999999999999999999
Q ss_pred HHHHhcccCCCCCeEEEcCEeCCCCChHHHhhcCeEecccccccccchhhhcCCC-CCCCHHHHHHHHHhCCCCcccccC
Q 000720 1252 IQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPL-EQHSDQEIWEVKISKLLTHKSYQC 1330 (1333)
Q Consensus 1252 i~lL~Rl~ep~~G~I~IDGvdI~~i~l~~LRs~isiVpQdp~LF~GTIR~NLdp~-~~~sDeeI~~aL~~~~L~~~~~~~ 1330 (1333)
+++|.|-|+|++|+|..+|+|++.++-+++|..|++++|.+.||+||+|+||... .++||||+|+||++++|.+...+.
T Consensus 381 lqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~ 460 (573)
T COG4987 381 LQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESA 460 (573)
T ss_pred HHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999754 469999999999999999887665
Q ss_pred C
Q 000720 1331 E 1331 (1333)
Q Consensus 1331 ~ 1331 (1333)
|
T Consensus 461 p 461 (573)
T COG4987 461 P 461 (573)
T ss_pred h
Confidence 3
No 84
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=2.9e-43 Score=440.00 Aligned_cols=207 Identities=26% Similarity=0.377 Sum_probs=158.8
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEEC--CeEEEEcC
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVH--GKKAYVPQ 666 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~--g~iayv~Q 666 (1333)
.++++|++++|+.+ .+++++ ||+|++|++++|+||||||||||+++|+|+++|++|++ .++ .++||++|
T Consensus 6 ~l~i~~l~~~y~~~-------~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i-~~~~~~~i~~v~Q 77 (556)
T PRK11819 6 IYTMNRVSKVVPPK-------KQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEA-RPAPGIKVGYLPQ 77 (556)
T ss_pred EEEEeeEEEEeCCC-------CeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE-EecCCCEEEEEec
Confidence 58999999999622 368999 99999999999999999999999999999999999986 554 47999999
Q ss_pred CCCCCC-CCHHHHhccCCc-CCH--H---------------------HHHHHHHHc---c---cchHHHh-hc-CCCccc
Q 000720 667 SSWIQT-GTIRENILFGKD-MRQ--S---------------------FYEEVLEGC---A---LNQDIEM-WA-DGDLSV 713 (1333)
Q Consensus 667 ~~~i~~-~Tv~enI~~g~~-~~~--~---------------------~~~~v~~~~---~---l~~d~~~-~~-~g~~t~ 713 (1333)
+|.+++ .|++||+.++.. +.. . .+.++.+.+ . ....++. +. .|- ..
T Consensus 78 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl-~~ 156 (556)
T PRK11819 78 EPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRC-PP 156 (556)
T ss_pred CCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCC-Cc
Confidence 998764 599999987631 000 0 000000000 0 0001110 00 111 12
Q ss_pred cCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEE
Q 000720 714 VGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVM 792 (1333)
Q Consensus 714 ig~~g~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl 792 (1333)
.+.+..+|||||||||+||||++.+|+++||||||++||+...+.+.+ +++.. +.|||+||||++++.. ||+|++|
T Consensus 157 ~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~-~L~~~--~~tviiisHd~~~~~~~~d~i~~l 233 (556)
T PRK11819 157 WDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQ-FLHDY--PGTVVAVTHDRYFLDNVAGWILEL 233 (556)
T ss_pred ccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHH-HHHhC--CCeEEEEeCCHHHHHhhcCeEEEE
Confidence 356788999999999999999999999999999999999999887765 44443 3599999999999865 9999999
Q ss_pred eCCeEE-EccChHHHHh
Q 000720 793 KDGKIE-QSGKYEDLIA 808 (1333)
Q Consensus 793 ~~G~i~-~~g~~~~l~~ 808 (1333)
++|+++ +.|+++++.+
T Consensus 234 ~~g~i~~~~g~~~~~~~ 250 (556)
T PRK11819 234 DRGRGIPWEGNYSSWLE 250 (556)
T ss_pred eCCEEEEecCCHHHHHH
Confidence 999986 7888887754
No 85
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=5.2e-43 Score=437.78 Aligned_cols=207 Identities=26% Similarity=0.381 Sum_probs=161.2
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEEC--CeEEEEcC
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVH--GKKAYVPQ 666 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~--g~iayv~Q 666 (1333)
-++++|++++|+.+ .+++++ ||++++|++++|+||||||||||+++|+|+.+|++|++ .++ .++||++|
T Consensus 4 ~i~~~nls~~~~~~-------~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i-~~~~~~~i~~v~Q 75 (552)
T TIGR03719 4 IYTMNRVSKVVPPK-------KEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEA-RPAPGIKVGYLPQ 75 (552)
T ss_pred EEEEeeEEEecCCC-------CeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE-EecCCCEEEEEec
Confidence 58899999999622 368999 99999999999999999999999999999999999986 554 46999999
Q ss_pred CCCCC-CCCHHHHhccCCcC------------------CH---------HHHHHHHHHcccc---hHHHh-hc-CCCccc
Q 000720 667 SSWIQ-TGTIRENILFGKDM------------------RQ---------SFYEEVLEGCALN---QDIEM-WA-DGDLSV 713 (1333)
Q Consensus 667 ~~~i~-~~Tv~enI~~g~~~------------------~~---------~~~~~v~~~~~l~---~d~~~-~~-~g~~t~ 713 (1333)
+|+++ +.|++||+.++... +. ....+.++.++.. ..+.. +. .|. ..
T Consensus 76 ~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-~~ 154 (552)
T TIGR03719 76 EPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRC-PP 154 (552)
T ss_pred cCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCC-Cc
Confidence 99875 56999999875321 00 0122223333321 11111 11 111 12
Q ss_pred cCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEE
Q 000720 714 VGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVM 792 (1333)
Q Consensus 714 ig~~g~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl 792 (1333)
.+.++.+||||||||++||||++.+|+++||||||++||+++.+.+.+. ++.. ++|+|+||||++++.. ||++++|
T Consensus 155 ~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~-L~~~--~~tvIiisHd~~~~~~~~d~v~~l 231 (552)
T TIGR03719 155 WDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQH-LQEY--PGTVVAVTHDRYFLDNVAGWILEL 231 (552)
T ss_pred ccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHH-HHhC--CCeEEEEeCCHHHHHhhcCeEEEE
Confidence 3567889999999999999999999999999999999999998877654 4333 3699999999999865 9999999
Q ss_pred eCCeEE-EccChHHHHh
Q 000720 793 KDGKIE-QSGKYEDLIA 808 (1333)
Q Consensus 793 ~~G~i~-~~g~~~~l~~ 808 (1333)
++|+++ ..|+++++.+
T Consensus 232 ~~g~i~~~~g~~~~~~~ 248 (552)
T TIGR03719 232 DRGRGIPWEGNYSSWLE 248 (552)
T ss_pred ECCEEEEecCCHHHHHH
Confidence 999975 7888888764
No 86
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-43 Score=438.46 Aligned_cols=191 Identities=26% Similarity=0.335 Sum_probs=154.7
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC---------
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g--------- 659 (1333)
.++++|++++|+. .+++++ ||++++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 4 ~l~~~~l~~~~~~--------~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I-~~~g~~i~~~~~~ 74 (501)
T PRK11288 4 YLSFDGIGKTFPG--------VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSI-LIDGQEMRFASTT 74 (501)
T ss_pred eEEEeeeEEEECC--------EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEE-EECCEECCCCCHH
Confidence 5889999999963 258999 99999999999999999999999999999999999986 5543
Q ss_pred -----eEEEEcCCCCCCC-CCHHHHhccCCc------CCHH----HHHHHHHHcccchHHHhhcCCCccccCCCCCCCCh
Q 000720 660 -----KKAYVPQSSWIQT-GTIRENILFGKD------MRQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSG 723 (1333)
Q Consensus 660 -----~iayv~Q~~~i~~-~Tv~enI~~g~~------~~~~----~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSG 723 (1333)
.++|++|++.++. .|++||+.++.. .+.. +.++.++.+++. .....++.+|||
T Consensus 75 ~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSg 143 (501)
T PRK11288 75 AALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVD-----------IDPDTPLKYLSI 143 (501)
T ss_pred HHHhCCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCC-----------CCcCCchhhCCH
Confidence 4899999987654 699999998632 1111 122223322221 123467789999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeCCeEEEc
Q 000720 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQS 800 (1333)
Q Consensus 724 GQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~~ 800 (1333)
|||||++||||++.+|+++||||||++||+.+.+.+.+.+.+...+|+|+|++|||++++.. ||+|++|++|+++..
T Consensus 144 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~ 221 (501)
T PRK11288 144 GQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVAT 221 (501)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEee
Confidence 99999999999999999999999999999999888877554433458999999999999855 999999999998753
No 87
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-41 Score=400.02 Aligned_cols=397 Identities=17% Similarity=0.184 Sum_probs=331.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCcchhHHHHhccHHHHHhHHHHHHH
Q 000720 927 EQLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLA 1006 (1333)
Q Consensus 927 ~~~l~vy~~l~~~~~i~~~~~~~~~~~~~~~~s~~L~~~ll~~il~ap~~fFd~tp~GrIlnRfs~Di~~vd~~l~~~l~ 1006 (1333)
..+++.+++..++..+....+.......+.++...+|.++++++.+.+..|-...|+|+..+.++.-++.++..+...++
T Consensus 40 ~~~~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l~~l~~~gp~~~~~~~~g~~atl~~egve~l~~Y~~ryLP 119 (559)
T COG4988 40 LPLLILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVLDKLAKLGPAFIAQKPAGSAATLALEGIEQLEPYYARYLP 119 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhcCCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666777788888888888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhHhhchHHHHHHHHhcchHHHHhcc
Q 000720 1007 GLAFALIQLLSIIILMSQAAWQVFPLF---LVILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFN 1083 (1333)
Q Consensus 1007 ~~~~~~~~~l~~ivv~~~~~~~l~lv~---ipl~~~~~~~~~~y~~~srel~rl~~~~~spl~~~~~Etl~G~~tIRaf~ 1083 (1333)
..+.+.+..+..++.+++.+|.-.+++ .|++|++.++ ....++...+..-.+...+.+||-+.+.|+.|+|+|+
T Consensus 120 q~~~~~ivp~~i~i~v~~~~w~aalIllit~PlIPlfMil---vg~~a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~ 196 (559)
T COG4988 120 QMFLSAIVPLLILIAIFFFNWAAALILLITAPLIPLFMIL---VGLAAKDASEKQFSALARLSGHFLDRLRGLETLRAFG 196 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH---HHHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhc
Confidence 999999999999999999999876654 5566655443 3445555666667777889999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccC-CCCChHHHHHHHHHHHHHHHHHHH
Q 000720 1084 QENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLIILVT-LPR-SAIDPSLAGLAATYGLNLNVLQAW 1161 (1333)
Q Consensus 1084 ~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~ll~~~~~~~~~~~~~~-~~~-~~~~~g~~gl~l~y~l~l~~~l~~ 1161 (1333)
..+...++..+.-+++.+........+---+..+|++.++.++.+++.... +.. |.++...+-+++..+.-+..++..
T Consensus 197 ~~~~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~lsiAlvAv~~g~~ll~~G~ltl~~~l~~LiLAPEff~PlR~ 276 (559)
T COG4988 197 RTEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYLSIALVAVYIGFRLLGEGDLTLFAGLFVLILAPEFFQPLRD 276 (559)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccHHHHHHHHHHhHHHHHHHHH
Confidence 999999999999999988888888887777888999998888777665433 223 345544444555666667777777
Q ss_pred HHHHHHHHHHHhhHHHHHHHhhcCCCCCCcccCCCCCCCCCCCcccEEEEEEEEEECCCCCCccccceEEecCCcEEEEE
Q 000720 1162 VIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVV 1241 (1333)
Q Consensus 1162 ~v~~~~~le~~~~SveRI~~~~~~p~E~~~~~~~~~~~~~wp~~G~I~f~nVsf~Y~~~~p~VLk~Is~~I~~GekVgIV 1241 (1333)
+-..+..-.+...+.|.+..+++.|.+.+... ......|-...+|+.+|++++|+++. ++++|+||+++||+++|||
T Consensus 277 lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~--~~~~~~~~~~~ei~~~~l~~~y~~g~-~~l~~l~~t~~~g~~talv 353 (559)
T COG4988 277 LGSFFHAAAAGEAAADKLFTLLESPVATPGSG--EKAEVANEPPIEISLENLSFRYPDGK-PALSDLNLTIKAGQLTALV 353 (559)
T ss_pred HHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCc--cccccccCCCceeeecceEEecCCCC-cccCCceeEecCCcEEEEE
Confidence 77777777788889999999998776644211 11122333344677779999997665 6999999999999999999
Q ss_pred CCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCCCChHHHhhcCeEecccccccccchhhhcCCCC-CCCHHHHHHHHHh
Q 000720 1242 GRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLE-QHSDQEIWEVKIS 1320 (1333)
Q Consensus 1242 GrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~i~l~~LRs~isiVpQdp~LF~GTIR~NLdp~~-~~sDeeI~~aL~~ 1320 (1333)
|+||||||||+++|.|+.+|++|+|.+||+|.++++.+++|+++++|||+|++|+|||||||...+ +.|||||++|+++
T Consensus 354 G~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~ 433 (559)
T COG4988 354 GASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQ 433 (559)
T ss_pred CCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCccccccHHHHhhccCCcCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999998765 4899999999999
Q ss_pred CCCCccccc
Q 000720 1321 KLLTHKSYQ 1329 (1333)
Q Consensus 1321 ~~L~~~~~~ 1329 (1333)
++|.+.+..
T Consensus 434 a~l~~~v~~ 442 (559)
T COG4988 434 AGLLEFVPK 442 (559)
T ss_pred hcHHHhhcC
Confidence 999998775
No 88
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=3.7e-41 Score=421.26 Aligned_cols=378 Identities=17% Similarity=0.185 Sum_probs=287.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCcchhHHHHhccHHHHHhHHHHHHHHHHHHHHHHH
Q 000720 937 SGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLL 1016 (1333)
Q Consensus 937 ~~~~~i~~~~~~~~~~~~~~~~s~~L~~~ll~~il~ap~~fFd~tp~GrIlnRfs~Di~~vd~~l~~~l~~~~~~~~~~l 1016 (1333)
.++..++.+++.++....+.+...++|.++++++++.|++||+++++|++++|+++|++.+...+. .+..++..++.++
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~ll~~~~~~~~~~~~g~~lsrl~~dv~~i~~~~~-~l~~~~~~~~~~i 136 (547)
T PRK10522 58 LLLLMAVTLGSQLALTTLGHHFVYRLRSEFIKRILDTHVERIEQLGSASLLASLTSDVRNITIAFV-RLPELVQGIILTL 136 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccCccchHHHHHhhHHHHHHHHH-HHHHHHHHHHHHH
Confidence 333345667788888899999999999999999999999999999999999999999999998665 4677788888899
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhchHHHHHHHHhcchHHHHhcccH---HHHHHHHH
Q 000720 1017 SIIILMSQAAWQVFPLFLVILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQE---NRFLLRSH 1093 (1333)
Q Consensus 1017 ~~ivv~~~~~~~l~lv~ipl~~~~~~~~~~y~~~srel~rl~~~~~spl~~~~~Etl~G~~tIRaf~~e---~~f~~~~~ 1093 (1333)
+.++++++.+|+++++++..+++.+++..++.+..+...+...+..+...+++.|.++|+.+|+ ++.+ +++.+++.
T Consensus 137 ~~~~~l~~~~~~l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~-~~~~~~~~~~~~~~~ 215 (547)
T PRK10522 137 GSAAYLAWLSPKMLLVTAIWMAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELT-LNRERAEYVFENEYE 215 (547)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhh-ccHHHHHHHHHHHHh
Confidence 9999999999999988877777776666667776666666667788899999999999999995 5543 45677777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000720 1094 SLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLIILVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKM 1173 (1333)
Q Consensus 1094 ~~~d~~~~~~~~~~~~~~wl~~rl~ll~~~~~~~~~~~~~~~~~~~~~~g~~gl~l~y~l~l~~~l~~~v~~~~~le~~~ 1173 (1333)
+..++..+.................++....+.+..+..... +....+.++....+.+.+..++..+...+.++....
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~ 293 (547)
T PRK10522 216 PDAQEYRHHIIRADTFHLSAVNWSNIMMLGAIGLVFYMANSL--GWADTNVAATYSLTLLFLRTPLLSAVGALPTLLSAQ 293 (547)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777766654443322211111111111111111111111101 112333344444444445566777788888999999
Q ss_pred hHHHHHHHhhcCCCCCCcccCCCCCCCCCCCcccEEEEEEEEEECCCCCCccccceEEecCCcEEEEECCCCccHHHHHH
Q 000720 1174 ISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQ 1253 (1333)
Q Consensus 1174 ~SveRI~~~~~~p~E~~~~~~~~~~~~~wp~~G~I~f~nVsf~Y~~~~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~ 1253 (1333)
.+.+|+.++.+.|+|++. ++..+. |..+.|+|+||+|+|+++ +++|+|+||+|+|||++||||+||||||||++
T Consensus 294 ~a~~ri~~l~~~~~~~~~--~~~~~~---~~~~~i~~~~v~f~y~~~-~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ 367 (547)
T PRK10522 294 VAFNKLNKLALAPYKAEF--PRPQAF---PDWQTLELRNVTFAYQDN-GFSVGPINLTIKRGELLFLIGGNGSGKSTLAM 367 (547)
T ss_pred HHHHHHHHHhcccccccc--cccccc---CcCceEEEEEEEEEeCCC-CeEEecceEEEcCCCEEEEECCCCCCHHHHHH
Confidence 999999999765543221 111111 123689999999999744 45999999999999999999999999999999
Q ss_pred HHhcccCCCCCeEEEcCEeCCCCChHHHhhcCeEecccccccccchhhhcCCCCCCCHHHHHHHHHhCCCCccc
Q 000720 1254 ALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVKISKLLTHKS 1327 (1333)
Q Consensus 1254 lL~Rl~ep~~G~I~IDGvdI~~i~l~~LRs~isiVpQdp~LF~GTIR~NLdp~~~~sDeeI~~aL~~~~L~~~~ 1327 (1333)
+|.|+|+|++|+|.+||+|+++++.+++|+++++|||||++|+||+++| ..+.+|++++++++++++.+..
T Consensus 368 ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n---~~~~~~~~~~~~~~~~~l~~~~ 438 (547)
T PRK10522 368 LLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE---GKPANPALVEKWLERLKMAHKL 438 (547)
T ss_pred HHhCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhccc---cCchHHHHHHHHHHHcCCchhh
Confidence 9999999999999999999999999999999999999999999999999 2467899999999999987643
No 89
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.9e-43 Score=433.79 Aligned_cols=193 Identities=22% Similarity=0.269 Sum_probs=152.0
Q ss_pred eeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC-------------
Q 000720 594 EAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG------------- 659 (1333)
Q Consensus 594 ~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g------------- 659 (1333)
+|++++|+. .+++++ ||++++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 2 ~nl~~~~~~--------~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i-~~~g~~~~~~~~~~~~~ 72 (491)
T PRK10982 2 SNISKSFPG--------VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSI-LFQGKEIDFKSSKEALE 72 (491)
T ss_pred CceEEEeCC--------EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEE-EECCEECCCCCHHHHHh
Confidence 577888853 358999 99999999999999999999999999999999999986 5554
Q ss_pred -eEEEEcCCCCC-CCCCHHHHhccCCc-C-----CHHH-HHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHH
Q 000720 660 -KKAYVPQSSWI-QTGTIRENILFGKD-M-----RQSF-YEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQ 730 (1333)
Q Consensus 660 -~iayv~Q~~~i-~~~Tv~enI~~g~~-~-----~~~~-~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~ 730 (1333)
.++|++|++.+ ++.|++||+.++.. . +... .+++.+ -++.+ |......+++.+|||||||||+
T Consensus 73 ~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~------~l~~~--~l~~~~~~~~~~LSgGq~qrv~ 144 (491)
T PRK10982 73 NGISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKA------IFDEL--DIDIDPRAKVATLSVSQMQMIE 144 (491)
T ss_pred CCEEEEecccccccCCCHHHHhhcccccccccccCHHHHHHHHHH------HHHHc--CCCCCccCchhhCCHHHHHHHH
Confidence 37999999865 45799999987642 1 1111 111111 11111 1112335678899999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhh-cCCEEEEEeCCeEEEccCh
Q 000720 731 LARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKY 803 (1333)
Q Consensus 731 LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~-~aD~i~vl~~G~i~~~g~~ 803 (1333)
||||++.+|+++||||||++||+.+.+.+.+.+.+...+++|+|++|||++++. .||+|++|++|++++.|+.
T Consensus 145 lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~ 218 (491)
T PRK10982 145 IAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPL 218 (491)
T ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecCh
Confidence 999999999999999999999999988887754443346899999999999886 4999999999999876543
No 90
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.5e-43 Score=410.05 Aligned_cols=262 Identities=21% Similarity=0.302 Sum_probs=217.4
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-CCCCCCCCCCCCCCccEEEeeeEEEcCC
Q 000720 524 KTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDN-QKKPITEPTSKASDVAIDIEAGEYAWDA 602 (1333)
Q Consensus 524 ~~~Lt~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e-~~~~~~~~~~~~~~~~I~i~~~~fsw~~ 602 (1333)
.++++++++|++++.|+.+..|+..+|..... .+|+++|+..+| +...... ..+.+..|+++|++++|+.
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~nls~~y~~ 92 (329)
T PRK14257 22 LNELDAKAIYDEFQKLNKYQRAFAWLKLPKQK-------KAELKQFLNKKKTQVDLLKE--DFNHANVFEIRNFNFWYMN 92 (329)
T ss_pred cchhHHHHHHHHhhccccccchhhHHhccccc-------chhhhhcccccccccccccC--CCCcCceEEEEeeEEEecC
Confidence 35689999999999999999999988876543 569999998766 3211111 1234468999999999974
Q ss_pred cccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCc-----CCCCcEEEE---------------CCeE
Q 000720 603 REENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP-----RISGAAIKV---------------HGKK 661 (1333)
Q Consensus 603 ~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~-----~~~G~~i~~---------------~g~i 661 (1333)
. ..+.|++ ||+|++||+++|+||||||||||+++|+|+++ |.+|++ .+ .+++
T Consensus 93 ~------~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I-~idG~~i~~~~~~~~~lr~~i 165 (329)
T PRK14257 93 R------TKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEI-YFLGTNTRSKKISSLELRTRI 165 (329)
T ss_pred C------CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEE-EECCEEccccccchHhhhccE
Confidence 3 3468999 99999999999999999999999999999986 468875 33 3468
Q ss_pred EEEcCCCCCCCCCHHHHhccCCcCC----HH----HHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHH
Q 000720 662 AYVPQSSWIQTGTIRENILFGKDMR----QS----FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLAR 733 (1333)
Q Consensus 662 ayv~Q~~~i~~~Tv~enI~~g~~~~----~~----~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LAR 733 (1333)
+|+||+||++++|++|||.|+..++ ++ .+++.++.|++..+++ +.+++++.+||||||||++|||
T Consensus 166 ~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~-------~~~~~~~~~LSgGqkqRl~LAR 238 (329)
T PRK14257 166 GMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVK-------DDLDKAGNALSGGQQQRLCIAR 238 (329)
T ss_pred EEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhh-------hhhhCCcccCCHHHHHHHHHHH
Confidence 9999999999999999999875322 22 2566677777654442 5678999999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeCCeEEEccChHHHHhh
Q 000720 734 AVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDLIAD 809 (1333)
Q Consensus 734 Al~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~~g~~~~l~~~ 809 (1333)
|++++|+|+||||||+|||+++.++ +.++++.+.+++|+|+|||+++++.. ||+|++|++|+|++.|+++++...
T Consensus 239 Al~~~p~IlLLDEPts~LD~~~~~~-i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~~~~l~~~ 314 (329)
T PRK14257 239 AIALEPEVLLMDEPTSALDPIATAK-IEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETKTIFIH 314 (329)
T ss_pred HHHhCCCEEEEeCCcccCCHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999887 45677777778999999999999876 999999999999999999998763
No 91
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.3e-41 Score=386.14 Aligned_cols=396 Identities=19% Similarity=0.287 Sum_probs=292.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCcchhHHHHhccHHHHHhHHHHHHH
Q 000720 927 EQLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLA 1006 (1333)
Q Consensus 927 ~~~l~vy~~l~~~~~i~~~~~~~~~~~~~~~~s~~L~~~ll~~il~ap~~fFd~tp~GrIlnRfs~Di~~vd~~l~~~l~ 1006 (1333)
...+..|.+..+++.+|..++.+.++++..++.++...+.|++.+++.++||.+..+|.|-+++..-...|...+...+.
T Consensus 74 ~~~~~~y~iar~~s~~F~el~~~vfa~v~q~~iR~~~~~vf~~~~~ld~~~~~~~~tG~l~~~idRgsraI~~vl~~~V~ 153 (591)
T KOG0057|consen 74 TALLAGYGIARLGSSVFNELRNFVFAKVAQRVIRDSSSDVFRHLMSLDLSFFLSRGTGALNRIIDRGSRAISFVLSAMVF 153 (591)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCcchHHHHHHhhhhHHHHHHHHHHH
Confidence 35677899999999999999999999999999999999999999999999999999998888877777777777766666
Q ss_pred HHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhHhhchHHHHHHHHhcchHHHHhccc
Q 000720 1007 GLAFALIQLLSIIILMSQ-AAWQVFPLFLVILGISIWYQAYYITTAR-ELARMVGTRKAPILHHFSESIAGATTIRCFNQ 1084 (1333)
Q Consensus 1007 ~~~~~~~~~l~~ivv~~~-~~~~l~lv~ipl~~~~~~~~~~y~~~sr-el~rl~~~~~spl~~~~~Etl~G~~tIRaf~~ 1084 (1333)
.++..++.+......+.+ ..+.+.++++..+..|..+. .+...-| ..++....+.....+..-|++.+-.+||+||.
T Consensus 154 ~i~p~~~~i~~v~~~l~~~~Ga~~~li~~~~v~~Y~a~T-i~~t~~Rn~fR~~~N~Adn~as~~~~dsL~Nye~VKsfNn 232 (591)
T KOG0057|consen 154 NIIPTLFEIALVSGILYYKFGAAFALITLGTVGAYAAFT-IVVTRWRNRFRKAMNNADNSASRRAYDSLINYEIVKSFNN 232 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhheeE-EeehhHHHHHHHHHHhhhhHHHHHHHHHHhhHHHHHHccc
Confidence 666555555444433322 23333333333333322111 1111111 22334455666777889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCCCCChHHHHHHHHHHHHHHHHHHHHH
Q 000720 1085 ENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLIILVT-LPRSAIDPSLAGLAATYGLNLNVLQAWVI 1163 (1333)
Q Consensus 1085 e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~ll~~~~~~~~~~~~~~-~~~~~~~~g~~gl~l~y~l~l~~~l~~~v 1163 (1333)
|++..++|...+.++.+......+....+.+.-..+.++....+...... ...+..+.+..-+..+...++...+..+-
T Consensus 233 E~~Ea~~y~~~l~~~~~~~~~~~~sl~~lnfgQ~~iFsv~~~~im~l~~~gi~~~~mtvgdlv~~n~l~~qL~~~l~~Lg 312 (591)
T KOG0057|consen 233 EEYEASRYDGSLKTYERAGLKYSSSLAFLNFGQKAIFSVALTFIMVLGSNGIAAGKMTVGDLVMVNSLLFQLSLPLNFLG 312 (591)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccchhhHHHHHHHHHhHHHHHH
Confidence 99999999999999988877665555544444444433322222222111 12234555666666666677777777777
Q ss_pred HHHHHHHHHhhHHHHHHHhhcCCCCCCcccCCCCCCCCCCCcccEEEEEEEEEECCCCCCccccceEEecCCcEEEEECC
Q 000720 1164 WNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGR 1243 (1333)
Q Consensus 1164 ~~~~~le~~~~SveRI~~~~~~p~E~~~~~~~~~~~~~wp~~G~I~f~nVsf~Y~~~~p~VLk~Is~~I~~GekVgIVGr 1243 (1333)
..+.++-.++.-.+-.+...+. +.. +.+. +++.-+..|.|+|+||+|.|.|+.| ||+|+||+|++||||||||+
T Consensus 313 ~vyr~~~q~l~Dm~~~~~l~~~--~~~--i~~~-~~~i~~~~~~I~F~dV~f~y~~k~~-iL~gvsf~I~kGekVaIvG~ 386 (591)
T KOG0057|consen 313 SVYRELRQALTDMRTLFILLEV--DED--IQEA-ALPIELFGGSIEFDDVHFSYGPKRK-VLKGVSFTIPKGEKVAIVGS 386 (591)
T ss_pred HHHHHHHHHHHhHHHHHhhhhh--hhh--hhhc-cCCcccCCCcEEEEeeEEEeCCCCc-eecceeEEecCCCEEEEECC
Confidence 7777777766655544433221 111 1111 2222234678999999999987654 99999999999999999999
Q ss_pred CCccHHHHHHHHhcccCCCCCeEEEcCEeCCCCChHHHhhcCeEecccccccccchhhhcCCCC-CCCHHHHHHHHHhCC
Q 000720 1244 TGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLE-QHSDQEIWEVKISKL 1322 (1333)
Q Consensus 1244 TGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~i~l~~LRs~isiVpQdp~LF~GTIR~NLdp~~-~~sDeeI~~aL~~~~ 1322 (1333)
+||||||++++|+||+| .+|+|+|||+||++++++.||+-||+||||..||++||-+||.+++ ..||||+.+++++.+
T Consensus 387 nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~ 465 (591)
T KOG0057|consen 387 NGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFNDTILYNIKYGNPSASDEEVVEACKRAG 465 (591)
T ss_pred CCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeEeCCcccccchhHHHHhhcCCCCcCHHHHHHHHHHcC
Confidence 99999999999999999 9999999999999999999999999999999999999999998775 589999999999999
Q ss_pred CCcccccC
Q 000720 1323 LTHKSYQC 1330 (1333)
Q Consensus 1323 L~~~~~~~ 1330 (1333)
+.|.....
T Consensus 466 ~hd~i~~l 473 (591)
T KOG0057|consen 466 LHDVISRL 473 (591)
T ss_pred cHHHHHhc
Confidence 99986554
No 92
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.2e-42 Score=360.95 Aligned_cols=203 Identities=30% Similarity=0.384 Sum_probs=170.7
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC---------
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g--------- 659 (1333)
-|+++|++.+|... .+|++ |++|++||.++|+||+||||||||+||.|+.+|++|++ .++|
T Consensus 2 mi~i~~l~K~fg~~--------~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I-~i~g~~~~~~~~~ 72 (240)
T COG1126 2 MIEIKNLSKSFGDK--------EVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSI-TVDGEDVGDKKDI 72 (240)
T ss_pred eEEEEeeeEEeCCe--------EEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceE-EECCEeccchhhH
Confidence 48899999999643 68999 99999999999999999999999999999999999996 7877
Q ss_pred -----eEEEEcCCCCCC-CCCHHHHhccCCc----CCH----HHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHH
Q 000720 660 -----KKAYVPQSSWIQ-TGTIRENILFGKD----MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (1333)
Q Consensus 660 -----~iayv~Q~~~i~-~~Tv~enI~~g~~----~~~----~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQ 725 (1333)
++|+|+|+..+| ..||.||+..+.- ..+ ++-.+.++..+|.+. .+..+.+|||||
T Consensus 73 ~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~k-----------a~~yP~qLSGGQ 141 (240)
T COG1126 73 LKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADK-----------ADAYPAQLSGGQ 141 (240)
T ss_pred HHHHHhcCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhh-----------hhhCccccCcHH
Confidence 368999998775 5799999998632 221 222233444444332 335678999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeCCeEEEccChH
Q 000720 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYE 804 (1333)
Q Consensus 726 kqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~~g~~~ 804 (1333)
||||||||||+.+|+++|+|||||||||+...++.+-+.....+|.|.|+|||++.|+.. ||||+.|++|+|+++|+++
T Consensus 142 qQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~ 221 (240)
T COG1126 142 QQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPE 221 (240)
T ss_pred HHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHH
Confidence 999999999999999999999999999999998887555556678999999999999976 9999999999999999999
Q ss_pred HHHhhcch
Q 000720 805 DLIADQNS 812 (1333)
Q Consensus 805 ~l~~~~~~ 812 (1333)
++..++..
T Consensus 222 ~~f~~p~~ 229 (240)
T COG1126 222 EFFDNPKS 229 (240)
T ss_pred HHhcCCCC
Confidence 99875443
No 93
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.6e-41 Score=421.70 Aligned_cols=206 Identities=23% Similarity=0.317 Sum_probs=151.9
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC--eEEEEcCC
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--KKAYVPQS 667 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g--~iayv~Q~ 667 (1333)
|.++|++++|.. ..++++ ||+|++|++++|+|||||||||||++|+|+++|++|++ .+++ .++|++|+
T Consensus 2 i~i~nls~~~g~--------~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I-~~~~~~~i~~~~q~ 72 (638)
T PRK10636 2 IVFSSLQIRRGV--------RVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSY-TFPGNWQLAWVNQE 72 (638)
T ss_pred EEEEEEEEEeCC--------ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE-EecCCCEEEEEecC
Confidence 688999999964 368999 99999999999999999999999999999999999997 6666 47999997
Q ss_pred CCCCCCCHHHHhccCCcCCH---------------HHHHHHHH---Hc---ccchHHHh-hc-CCCc-cccCCCCCCCCh
Q 000720 668 SWIQTGTIRENILFGKDMRQ---------------SFYEEVLE---GC---ALNQDIEM-WA-DGDL-SVVGERGINLSG 723 (1333)
Q Consensus 668 ~~i~~~Tv~enI~~g~~~~~---------------~~~~~v~~---~~---~l~~d~~~-~~-~g~~-t~ig~~g~~LSG 723 (1333)
+.....|+.+++.-+..... ..|..... .. .....+.. +. .|.. ...+.+..+|||
T Consensus 73 ~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSg 152 (638)
T PRK10636 73 TPALPQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSG 152 (638)
T ss_pred CCCCCCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCH
Confidence 54444577666542210000 00100000 00 00001110 10 1111 123567889999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeCCeEE-Ecc
Q 000720 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIE-QSG 801 (1333)
Q Consensus 724 GQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~-~~g 801 (1333)
||||||+|||||+.+|+++||||||++||+.+..++.+ .+... +.|||+||||++++.. ||+|++|++|++. +.|
T Consensus 153 GerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~-~L~~~--~~tviivsHd~~~l~~~~d~i~~L~~G~i~~~~g 229 (638)
T PRK10636 153 GWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEK-WLKSY--QGTLILISHDRDFLDPIVDKIIHIEQQSLFEYTG 229 (638)
T ss_pred HHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHH-HHHhC--CCeEEEEeCCHHHHHHhcCEEEEEeCCEEEEecC
Confidence 99999999999999999999999999999999877655 33332 5799999999999875 9999999999996 678
Q ss_pred ChHHHHh
Q 000720 802 KYEDLIA 808 (1333)
Q Consensus 802 ~~~~l~~ 808 (1333)
+|+++..
T Consensus 230 ~~~~~~~ 236 (638)
T PRK10636 230 NYSSFEV 236 (638)
T ss_pred CHHHHHH
Confidence 8877654
No 94
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=4.5e-40 Score=416.78 Aligned_cols=205 Identities=24% Similarity=0.355 Sum_probs=152.5
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECCe--EEEEcC
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK--KAYVPQ 666 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g~--iayv~Q 666 (1333)
.++++|++++|+. .+++++ ||++++|++++|+|||||||||||++|+|+++|++|++ .+++. ++|++|
T Consensus 3 ~l~i~~ls~~~~~--------~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I-~~~~~~~~~~l~q 73 (635)
T PRK11147 3 LISIHGAWLSFSD--------APLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRI-IYEQDLIVARLQQ 73 (635)
T ss_pred EEEEeeEEEEeCC--------ceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEE-EeCCCCEEEEecc
Confidence 3789999999964 368999 99999999999999999999999999999999999997 67664 689999
Q ss_pred CCCC-CCCCHHHHhccCCcCC---HHHH-------------------HHH---HHHc---ccchHHHh-hc-CCCccccC
Q 000720 667 SSWI-QTGTIRENILFGKDMR---QSFY-------------------EEV---LEGC---ALNQDIEM-WA-DGDLSVVG 715 (1333)
Q Consensus 667 ~~~i-~~~Tv~enI~~g~~~~---~~~~-------------------~~v---~~~~---~l~~d~~~-~~-~g~~t~ig 715 (1333)
.+.. ..+++.+++..+.... ...+ ..+ ++.. .....+.. +. .|. + ..
T Consensus 74 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl-~-~~ 151 (635)
T PRK11147 74 DPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGL-D-PD 151 (635)
T ss_pred CCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCC-C-CC
Confidence 7643 3468888764321100 0000 000 0000 00001111 00 011 1 24
Q ss_pred CCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeC
Q 000720 716 ERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKD 794 (1333)
Q Consensus 716 ~~g~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~ 794 (1333)
.+..+|||||||||+|||||+.+|+++||||||++||+.+.+++.+ .+... +.|||+||||.+++.. ||+|++|++
T Consensus 152 ~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~-~L~~~--~~tvlivsHd~~~l~~~~d~i~~L~~ 228 (635)
T PRK11147 152 AALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEG-FLKTF--QGSIIFISHDRSFIRNMATRIVDLDR 228 (635)
T ss_pred CchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHH-HHHhC--CCEEEEEeCCHHHHHHhcCeEEEEEC
Confidence 6778999999999999999999999999999999999999887765 34333 3699999999999875 999999999
Q ss_pred CeEE-EccChHHHHh
Q 000720 795 GKIE-QSGKYEDLIA 808 (1333)
Q Consensus 795 G~i~-~~g~~~~l~~ 808 (1333)
|+++ +.|+|+++..
T Consensus 229 G~i~~~~g~~~~~~~ 243 (635)
T PRK11147 229 GKLVSYPGNYDQYLL 243 (635)
T ss_pred CEEEEecCCHHHHHH
Confidence 9997 5688887765
No 95
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=1e-38 Score=428.60 Aligned_cols=198 Identities=21% Similarity=0.315 Sum_probs=151.1
Q ss_pred CcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCC---CCcEEEECC----------eEEEEcCCCC-CCCCC
Q 000720 610 PTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRI---SGAAIKVHG----------KKAYVPQSSW-IQTGT 674 (1333)
Q Consensus 610 ~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~---~G~~i~~~g----------~iayv~Q~~~-i~~~T 674 (1333)
...+|+| |+.+++||+++|+|||||||||||++|+|.++|. +|++ .++| .++||+|++. +.+.|
T Consensus 177 ~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I-~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lT 255 (1470)
T PLN03140 177 KLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEI-TYNGYRLNEFVPRKTSAYISQNDVHVGVMT 255 (1470)
T ss_pred cceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEE-EECCEechhhcccceeEEecccccCCCcCc
Confidence 3457999 9999999999999999999999999999999987 8886 5554 4799999865 56789
Q ss_pred HHHHhccCCcCC--------------HHH---------HHHHHHHccc---------chHHHh--hcCCCccccCC-CCC
Q 000720 675 IRENILFGKDMR--------------QSF---------YEEVLEGCAL---------NQDIEM--WADGDLSVVGE-RGI 719 (1333)
Q Consensus 675 v~enI~~g~~~~--------------~~~---------~~~v~~~~~l---------~~d~~~--~~~g~~t~ig~-~g~ 719 (1333)
|+||+.|+.... +++ .+...+++.. +.-++. +.+..+|.+|. ...
T Consensus 256 V~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~r 335 (1470)
T PLN03140 256 VKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIR 335 (1470)
T ss_pred HHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCcccc
Confidence 999999853211 000 0001111110 001112 22233566654 567
Q ss_pred CCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEecCchh-h-hhcCCEEEEEeCCe
Q 000720 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLE-F-LDAADLVLVMKDGK 796 (1333)
Q Consensus 720 ~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~-~~~TvIlvtH~~~-~-l~~aD~i~vl~~G~ 796 (1333)
.|||||||||+|||+++.+|++++|||||+|||+.++.++.+.+.+... .|+|+|+++||+. . .+.+|+|++|++|+
T Consensus 336 glSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~ 415 (1470)
T PLN03140 336 GISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQ 415 (1470)
T ss_pred CCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCce
Confidence 9999999999999999999999999999999999999988865444333 4799999999973 4 45699999999999
Q ss_pred EEEccChHHHHh
Q 000720 797 IEQSGKYEDLIA 808 (1333)
Q Consensus 797 i~~~g~~~~l~~ 808 (1333)
+++.|+.+++.+
T Consensus 416 ivy~G~~~~~~~ 427 (1470)
T PLN03140 416 IVYQGPRDHILE 427 (1470)
T ss_pred EEEeCCHHHHHH
Confidence 999999988863
No 96
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=100.00 E-value=1.7e-39 Score=393.62 Aligned_cols=206 Identities=25% Similarity=0.360 Sum_probs=159.4
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC--eEEEEcC
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--KKAYVPQ 666 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g--~iayv~Q 666 (1333)
.|.++|++++|.. ++.+.+ |+++.+|+++||||+|||||||||++|.|+..|++|++ ...+ +++|++|
T Consensus 3 ~i~~~~ls~~~g~--------~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i-~~~~~~~v~~l~Q 73 (530)
T COG0488 3 MITLENLSLAYGD--------RPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEV-TRPKGLRVGYLSQ 73 (530)
T ss_pred eEEEeeeEEeeCC--------ceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeE-eecCCceEEEeCC
Confidence 4788999999954 478999 99999999999999999999999999999999999997 5554 7999999
Q ss_pred CCCCCC-CCHHHHhccCCcCCH---HHHHHHHHHc---------------------ccchHHHhhcC--CCccccCCCCC
Q 000720 667 SSWIQT-GTIRENILFGKDMRQ---SFYEEVLEGC---------------------ALNQDIEMWAD--GDLSVVGERGI 719 (1333)
Q Consensus 667 ~~~i~~-~Tv~enI~~g~~~~~---~~~~~v~~~~---------------------~l~~d~~~~~~--g~~t~ig~~g~ 719 (1333)
++.... .||+|.+..+...-. ..++...... ..+.+++..-. |.... ..+..
T Consensus 74 ~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~-~~~~~ 152 (530)
T COG0488 74 EPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE-DRPVS 152 (530)
T ss_pred CCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-cCchh
Confidence 988764 599999987743211 1111111100 00111111111 22222 46778
Q ss_pred CCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeCCeE-
Q 000720 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKI- 797 (1333)
Q Consensus 720 ~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i- 797 (1333)
+||||||.||+|||||..+||++||||||++||..+..++-+ .+. ..+| |+|+||||.+|+.. |++|+.+++|++
T Consensus 153 ~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~-~L~-~~~g-tviiVSHDR~FLd~V~t~I~~ld~g~l~ 229 (530)
T COG0488 153 SLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLED-YLK-RYPG-TVIVVSHDRYFLDNVATHILELDRGKLT 229 (530)
T ss_pred hcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHH-HHH-hCCC-cEEEEeCCHHHHHHHhhheEEecCCcee
Confidence 999999999999999999999999999999999998777644 332 2245 99999999999987 999999999987
Q ss_pred EEccChHHHHh
Q 000720 798 EQSGKYEDLIA 808 (1333)
Q Consensus 798 ~~~g~~~~l~~ 808 (1333)
.+.|+|+...+
T Consensus 230 ~y~Gny~~~~~ 240 (530)
T COG0488 230 PYKGNYSSYLE 240 (530)
T ss_pred EecCCHHHHHH
Confidence 47888988876
No 97
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=1.2e-38 Score=403.36 Aligned_cols=205 Identities=22% Similarity=0.273 Sum_probs=145.6
Q ss_pred ccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECCeEEEEcCC
Q 000720 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQS 667 (1333)
Q Consensus 589 ~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g~iayv~Q~ 667 (1333)
..|.++|++++|+.. +.|++ ||+|++|++++|+|||||||||||++|+|+.. .| + .-+|+++|++|+
T Consensus 176 ~~I~i~nls~~y~~~--------~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~--~g-~-p~~g~I~~~~Q~ 243 (718)
T PLN03073 176 KDIHMENFSISVGGR--------DLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAI--DG-I-PKNCQILHVEQE 243 (718)
T ss_pred eeEEEceEEEEeCCC--------EEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCC--CC-C-CCCCEEEEEecc
Confidence 469999999999643 58999 99999999999999999999999999999741 23 1 335678899997
Q ss_pred CCCCCCCHHHHhccCC-------------------------------------cCCH--HHHHHHHHHcccch------H
Q 000720 668 SWIQTGTIRENILFGK-------------------------------------DMRQ--SFYEEVLEGCALNQ------D 702 (1333)
Q Consensus 668 ~~i~~~Tv~enI~~g~-------------------------------------~~~~--~~~~~v~~~~~l~~------d 702 (1333)
+.-...|+.|.+.-.. +.+. +++.++.+...+.+ .
T Consensus 244 ~~g~~~t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r 323 (718)
T PLN03073 244 VVGDDTTALQCVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEAR 323 (718)
T ss_pred CCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHH
Confidence 5433445544322110 0000 11222222111100 0
Q ss_pred HHh-hc-CCCc-cccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCc
Q 000720 703 IEM-WA-DGDL-SVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQ 779 (1333)
Q Consensus 703 ~~~-~~-~g~~-t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~ 779 (1333)
+.. +. .|-. .....+..+||||||||++|||||+.+|+++||||||++||+....++.+. ++.. ++|+|+||||
T Consensus 324 ~~~~L~~lgl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~-L~~~--~~tviivsHd 400 (718)
T PLN03073 324 AASILAGLSFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETY-LLKW--PKTFIVVSHA 400 (718)
T ss_pred HHHHHHHCCCChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHH-HHHc--CCEEEEEECC
Confidence 000 00 0110 123456789999999999999999999999999999999999998877653 3333 6899999999
Q ss_pred hhhhhc-CCEEEEEeCCeEE-EccChHHHHh
Q 000720 780 LEFLDA-ADLVLVMKDGKIE-QSGKYEDLIA 808 (1333)
Q Consensus 780 ~~~l~~-aD~i~vl~~G~i~-~~g~~~~l~~ 808 (1333)
.+++.. ||+|++|++|++. +.|+++++..
T Consensus 401 ~~~l~~~~d~i~~l~~g~i~~~~g~~~~~~~ 431 (718)
T PLN03073 401 REFLNTVVTDILHLHGQKLVTYKGDYDTFER 431 (718)
T ss_pred HHHHHHhCCEEEEEECCEEEEeCCCHHHHHH
Confidence 999876 9999999999996 7888877654
No 98
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.1e-39 Score=361.87 Aligned_cols=381 Identities=17% Similarity=0.304 Sum_probs=310.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCcchhHHHHhccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-HH
Q 000720 947 RAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMS-QA 1025 (1333)
Q Consensus 947 ~~~~~~~~~~~~s~~L~~~ll~~il~ap~~fFd~tp~GrIlnRfs~Di~~vd~~l~~~l~~~~~~~~~~l~~ivv~~-~~ 1025 (1333)
|..++...+..+.+.+--+-|.|+....+.|.-+..+|-+..-...-..-|+..+-..+...+...+.+...++++. ..
T Consensus 2 r~~~fs~v~q~a~r~la~~~F~h~~~Lsl~fHl~r~TGglsR~ierGtkgI~~i~~~~l~~i~P~~~Ei~l~~vi~~~~~ 81 (497)
T COG5265 2 RDRLFSPVGQIAVRVLAYVTFFHLHSLSLRFHLERRTGGLSRAIERGTKGIETILRWILFNILPTLVEISLVAVILWRVY 81 (497)
T ss_pred chHhhhHHHHHHHHHHHHHHHHHHHhcchhhhhhcccCceeeHhhcCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHhhc
Confidence 34567788888999999999999999999999887777554333333344444455555555555555554444443 45
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Q 000720 1026 AWQVFPLFLVILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFH 1105 (1333)
Q Consensus 1026 ~~~l~lv~ipl~~~~~~~~~~y~~~srel~rl~~~~~spl~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~ 1105 (1333)
+|++..+.+..+++|.++......---..+|....+.+...+...+++-+-.|++.|+.|+.+..+|.+.++.+.++...
T Consensus 82 ~~~f~~~t~vtv~lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k 161 (497)
T COG5265 82 GWWFALTTLVTVILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIK 161 (497)
T ss_pred ccHHHHHHHHHHHHHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHHH
Confidence 78888887777777666544444334455677777888889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhc
Q 000720 1106 NCGTMEWLCLRINLLFNFAFFLVLIIL-VTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTN 1184 (1333)
Q Consensus 1106 ~~~~~~wl~~rl~ll~~~~~~~~~~~~-~~~~~~~~~~g~~gl~l~y~l~l~~~l~~~v~~~~~le~~~~SveRI~~~~~ 1184 (1333)
...+-.||++.-..+.+.......... .....+..+.|...+.-.+..+++.+++.+-..+.++.+.....|+..+..+
T Consensus 162 ~~~Sl~~Ln~gQ~~I~~~~l~~~m~~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl~ 241 (497)
T COG5265 162 VHVSLLVLNFGQTAIFSTGLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLD 241 (497)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhhcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhhc
Confidence 988889988877766654433332221 1233566788888889999999999999999999999999999999999988
Q ss_pred CCCCCCcccCCCCCCCCCCC-cccEEEEEEEEEECCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCC
Q 000720 1185 IPSEAPLVIKNSRPSPEWPS-SGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSG 1263 (1333)
Q Consensus 1185 ~p~E~~~~~~~~~~~~~wp~-~G~I~f~nVsf~Y~~~~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~ 1263 (1333)
.+.|-. +....++.||. .|.|.|+||+|.|.|..| +|+|+||++++|+|+||||++|+||||+..+|+||||+++
T Consensus 242 ~~~~v~---d~pda~~L~~~~~g~v~F~~V~F~y~~~r~-iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~s 317 (497)
T COG5265 242 VEAEVS---DAPDAPPLWPVRLGAVAFINVSFAYDPRRP-ILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNS 317 (497)
T ss_pred cchhhc---cCCCCccccccccceEEEEEEEeeccccch-hhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcC
Confidence 776642 34456677864 589999999999998876 9999999999999999999999999999999999999999
Q ss_pred CeEEEcCEeCCCCChHHHhhcCeEecccccccccchhhhcCCCC-CCCHHHHHHHHHhCCCCcccccCC
Q 000720 1264 GRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLE-QHSDQEIWEVKISKLLTHKSYQCE 1331 (1333)
Q Consensus 1264 G~I~IDGvdI~~i~l~~LRs~isiVpQdp~LF~GTIR~NLdp~~-~~sDeeI~~aL~~~~L~~~~~~~~ 1331 (1333)
|+|.|||+||+++..++||+.||+||||.+||+.||..|+...+ ..|+||+++|++.+|+.+...+.|
T Consensus 318 G~I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP 386 (497)
T COG5265 318 GSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLP 386 (497)
T ss_pred ceEEEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCc
Confidence 99999999999999999999999999999999999999998765 589999999999999998876655
No 99
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=8.2e-39 Score=355.45 Aligned_cols=206 Identities=28% Similarity=0.400 Sum_probs=157.2
Q ss_pred ccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcC-----CCCcEEEECC---
Q 000720 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR-----ISGAAIKVHG--- 659 (1333)
Q Consensus 589 ~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~-----~~G~~i~~~g--- 659 (1333)
.-+.++|.+.++...+ ......++ +|++++||.+|+||++|||||-..++|+|+++. .+|++ ..+|
T Consensus 5 ~lL~v~nLsV~f~~~~----~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i-~f~G~dl 79 (534)
T COG4172 5 PLLSIRNLSVAFHQEG----GTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSI-LFDGEDL 79 (534)
T ss_pred cceeeeccEEEEecCC----cceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCcccee-EEcChhh
Confidence 4578888887776441 34567889 999999999999999999999999999999975 24554 4443
Q ss_pred --------------eEEEEcCCCC--CCC-CCHHHHhc----cCCcCC----HHHHHHHHHHcccchHHHhhcCCCcccc
Q 000720 660 --------------KKAYVPQSSW--IQT-GTIRENIL----FGKDMR----QSFYEEVLEGCALNQDIEMWADGDLSVV 714 (1333)
Q Consensus 660 --------------~iayv~Q~~~--i~~-~Tv~enI~----~g~~~~----~~~~~~v~~~~~l~~d~~~~~~g~~t~i 714 (1333)
+|++++|+|- +.. .||..-|. ..+... +++.-+.++..++.+- ...+
T Consensus 80 l~~se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p--------~~rl 151 (534)
T COG4172 80 LAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEP--------EKRL 151 (534)
T ss_pred hcCCHHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCch--------hhhh
Confidence 6899999995 222 36655443 322222 1223333344443221 1234
Q ss_pred CCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh--CCCeEEEecCchhhhhc-CCEEEE
Q 000720 715 GERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLDA-ADLVLV 791 (1333)
Q Consensus 715 g~~g~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~--~~~TvIlvtH~~~~l~~-aD~i~v 791 (1333)
+..+.+|||||||||.||.||+.+||++|-||||.|||..++.+|.+. ++.+. -|..++++|||+..+.. ||+|+|
T Consensus 152 ~~yPHeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~L-l~~Lq~~~gMa~lfITHDL~iVr~~ADrV~V 230 (534)
T COG4172 152 DAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDL-LKELQAELGMAILFITHDLGIVRKFADRVYV 230 (534)
T ss_pred hhCCcccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHH-HHHHHHHhCcEEEEEeccHHHHHHhhhhEEE
Confidence 567899999999999999999999999999999999999999999874 44443 37899999999999976 999999
Q ss_pred EeCCeEEEccChHHHHh
Q 000720 792 MKDGKIEQSGKYEDLIA 808 (1333)
Q Consensus 792 l~~G~i~~~g~~~~l~~ 808 (1333)
|.+|++++.|+.+++..
T Consensus 231 M~~G~ivE~~~t~~lF~ 247 (534)
T COG4172 231 MQHGEIVETGTTETLFA 247 (534)
T ss_pred EeccEEeecCcHHHHhh
Confidence 99999999998777765
No 100
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=2.8e-40 Score=349.04 Aligned_cols=210 Identities=27% Similarity=0.385 Sum_probs=174.3
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC----------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g---------- 659 (1333)
|+++|+++.|.. ...+++ ||+|++||+++++||+||||||+|++|.++++|++|++ .++|
T Consensus 2 I~~~nvsk~y~~--------~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I-~i~g~~i~~~d~~~ 72 (309)
T COG1125 2 IEFENVSKRYGN--------KKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEI-LIDGEDISDLDPVE 72 (309)
T ss_pred ceeeeeehhcCC--------ceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceE-EECCeecccCCHHH
Confidence 789999999963 367888 99999999999999999999999999999999999996 7776
Q ss_pred ---eEEEEcCCCCC-CCCCHHHHhccCCc---CCHH----HHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHH
Q 000720 660 ---KKAYVPQSSWI-QTGTIRENILFGKD---MRQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQR 728 (1333)
Q Consensus 660 ---~iayv~Q~~~i-~~~Tv~enI~~g~~---~~~~----~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqR 728 (1333)
++|||-|+.-+ ++.||.|||..-.. ++++ +.++.++..+|+.. ...++.+.+|||||+||
T Consensus 73 LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~---------~~~~RyP~eLSGGQQQR 143 (309)
T COG1125 73 LRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPS---------EYADRYPHELSGGQQQR 143 (309)
T ss_pred HHHhhhhhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHH---------HHhhcCchhcCcchhhH
Confidence 47999998765 57899999987543 3333 33344444444321 12346789999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEecCchhhh-hcCCEEEEEeCCeEEEccChHHH
Q 000720 729 IQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFL-DAADLVLVMKDGKIEQSGKYEDL 806 (1333)
Q Consensus 729 v~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~-~~~TvIlvtH~~~~l-~~aD~i~vl~~G~i~~~g~~~~l 806 (1333)
|.+||||+.+|+|+|+||||+||||.++.++-+++.+... -++|+|+||||++++ +-+|||.+|++|+|++.++|+++
T Consensus 144 VGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~i 223 (309)
T COG1125 144 VGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEI 223 (309)
T ss_pred HHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHH
Confidence 9999999999999999999999999998888766554333 389999999999885 56999999999999999999999
Q ss_pred HhhcchHHHHHH
Q 000720 807 IADQNSELVRQM 818 (1333)
Q Consensus 807 ~~~~~~~~~~~~ 818 (1333)
+.++..+|.+.+
T Consensus 224 l~~Pan~FV~~f 235 (309)
T COG1125 224 LANPANDFVEDF 235 (309)
T ss_pred HhCccHHHHHHH
Confidence 987777776644
No 101
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.5e-40 Score=357.15 Aligned_cols=214 Identities=26% Similarity=0.340 Sum_probs=174.4
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC----------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g---------- 659 (1333)
|+++++++.|..+. ......++| ||+|++||+.+|+|++|||||||+++|.++..|++|++ .++|
T Consensus 2 I~l~~vsK~~~~~~---~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v-~v~G~di~~l~~~~ 77 (339)
T COG1135 2 IELENVSKTFGQTG---TGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSV-FVDGQDLTALSEAE 77 (339)
T ss_pred eEEEeeeeeeccCC---CCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceE-EEcCEecccCChHH
Confidence 78999999997630 123467899 99999999999999999999999999999999999997 7776
Q ss_pred ------eEEEEcCCCCCCC-CCHHHHhccCCcCC----HHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHH
Q 000720 660 ------KKAYVPQSSWIQT-GTIRENILFGKDMR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQR 728 (1333)
Q Consensus 660 ------~iayv~Q~~~i~~-~Tv~enI~~g~~~~----~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqR 728 (1333)
+||+++|++.+.+ .||.|||.|..+.. ++..+++.+.+.+. |.....+..+.+||||||||
T Consensus 78 Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelV--------gL~dk~~~yP~qLSGGQKQR 149 (339)
T COG1135 78 LRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELV--------GLSDKADRYPAQLSGGQKQR 149 (339)
T ss_pred HHHHHhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHc--------CChhhhccCchhcCcchhhH
Confidence 4799999998775 79999999975432 23344444333221 11123346789999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCeEEEecCchhhhhc-CCEEEEEeCCeEEEccChHHH
Q 000720 729 IQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-LSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDL 806 (1333)
Q Consensus 729 v~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~-~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~~g~~~~l 806 (1333)
|+|||||+.+|+|+|.|||||||||++.+.|.+.+.+-. .-|-||++|||.|+.++. ||||.||++|++++.|+..++
T Consensus 150 VaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~v 229 (339)
T COG1135 150 VAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEV 229 (339)
T ss_pred HHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHh
Confidence 999999999999999999999999999999987543322 237899999999999976 999999999999999999999
Q ss_pred HhhcchHHHH
Q 000720 807 IADQNSELVR 816 (1333)
Q Consensus 807 ~~~~~~~~~~ 816 (1333)
..++..+..+
T Consensus 230 F~~Pk~~~t~ 239 (339)
T COG1135 230 FANPKHAITQ 239 (339)
T ss_pred hcCcchHHHH
Confidence 8765544433
No 102
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.3e-39 Score=349.74 Aligned_cols=188 Identities=32% Similarity=0.446 Sum_probs=157.8
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC--------e
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------K 660 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g--------~ 660 (1333)
.+.+++++.+|.. ..+|+| ||+|++||+++|+||+||||||||++|+|+.+|++|++ .++| .
T Consensus 3 ~l~i~~v~~~f~~--------~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V-~~~g~~v~~p~~~ 73 (248)
T COG1116 3 LLEIEGVSKSFGG--------VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEV-LLDGRPVTGPGPD 73 (248)
T ss_pred eEEEEeeEEEeCc--------eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE-EECCcccCCCCCC
Confidence 4788999998864 478999 99999999999999999999999999999999999986 7766 4
Q ss_pred EEEEcCCCCCC-CCCHHHHhccCCcCC-------HHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHH
Q 000720 661 KAYVPQSSWIQ-TGTIRENILFGKDMR-------QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLA 732 (1333)
Q Consensus 661 iayv~Q~~~i~-~~Tv~enI~~g~~~~-------~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LA 732 (1333)
+|||+|++-++ -.||+||+.++.+.. .++-++.++..+|.. .-+..+.+|||||||||+||
T Consensus 74 ~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~-----------~~~~~P~qLSGGMrQRVaiA 142 (248)
T COG1116 74 IGYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAG-----------FEDKYPHQLSGGMRQRVAIA 142 (248)
T ss_pred EEEEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcc-----------hhhcCccccChHHHHHHHHH
Confidence 79999998754 579999999987642 123344455555432 22367889999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEecCchhhhh-cCCEEEEEeC--CeE
Q 000720 733 RAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS-QKTVLYTTHQLEFLD-AADLVLVMKD--GKI 797 (1333)
Q Consensus 733 RAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~-~~TvIlvtH~~~~l~-~aD~i~vl~~--G~i 797 (1333)
|||+.+|+++||||||+|||+.|+.++-+.+.+-+.+ ++||++||||+++.- -+|||++|.+ |+|
T Consensus 143 RAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~P~~i 211 (248)
T COG1116 143 RALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRPGRI 211 (248)
T ss_pred HHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCCCcce
Confidence 9999999999999999999999999888777665544 689999999998865 4999999998 445
No 103
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=2.8e-39 Score=354.38 Aligned_cols=199 Identities=30% Similarity=0.418 Sum_probs=168.2
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC---------
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g--------- 659 (1333)
.++++|.+|+|+. +++++| ||++++||+++|+|||||||||||++|+|.++|.+|++ .++|
T Consensus 2 ~L~~~~ls~~y~~--------~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V-~l~g~~i~~~~~k 72 (258)
T COG1120 2 MLEVENLSFGYGG--------KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEV-LLDGKDIASLSPK 72 (258)
T ss_pred eeEEEEEEEEECC--------eeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEE-EECCCchhhcCHH
Confidence 4789999999974 489999 99999999999999999999999999999999999996 8877
Q ss_pred ----eEEEEcCCCC-CCCCCHHHHhccCCcCC--------HHH---HHHHHHHcccchHHHhhcCCCccccCCCCCCCCh
Q 000720 660 ----KKAYVPQSSW-IQTGTIRENILFGKDMR--------QSF---YEEVLEGCALNQDIEMWADGDLSVVGERGINLSG 723 (1333)
Q Consensus 660 ----~iayv~Q~~~-i~~~Tv~enI~~g~~~~--------~~~---~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSG 723 (1333)
++||+||++. .+..||+|-+.+|+... ++. .+++++.+++. ...++...+|||
T Consensus 73 elAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~-----------~la~r~~~~LSG 141 (258)
T COG1120 73 ELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLE-----------HLADRPVDELSG 141 (258)
T ss_pred HHhhhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcH-----------HHhcCcccccCh
Confidence 5899999975 45779999999996421 111 22234444332 122356789999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCeEEEecCchhhh-hcCCEEEEEeCCeEEEcc
Q 000720 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-LSQKTVLYTTHQLEFL-DAADLVLVMKDGKIEQSG 801 (1333)
Q Consensus 724 GQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~-~~~~TvIlvtH~~~~l-~~aD~i~vl~~G~i~~~g 801 (1333)
||||||.|||||+++|+++|||||||+||...+.++++.+.+.. .+|+|+|+|+||++.. .+||++++|++|+++..|
T Consensus 142 GerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G 221 (258)
T COG1120 142 GERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQG 221 (258)
T ss_pred hHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeec
Confidence 99999999999999999999999999999999999988665544 3589999999999985 679999999999999999
Q ss_pred ChHHHHh
Q 000720 802 KYEDLIA 808 (1333)
Q Consensus 802 ~~~~l~~ 808 (1333)
++++++.
T Consensus 222 ~p~evlT 228 (258)
T COG1120 222 TPEEVLT 228 (258)
T ss_pred CcchhcC
Confidence 9999986
No 104
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.1e-39 Score=351.04 Aligned_cols=199 Identities=32% Similarity=0.476 Sum_probs=165.6
Q ss_pred ccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC--------
Q 000720 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------- 659 (1333)
Q Consensus 589 ~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g-------- 659 (1333)
..|+++|++|+|+.+ ++|+| ||++++|++++|+||||||||||+|+|+|+++|.+|++ .+.|
T Consensus 3 ~~i~v~nl~v~y~~~--------~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i-~~~g~~~~~~~~ 73 (254)
T COG1121 3 PMIEVENLTVSYGNR--------PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEI-KIFGKPVRKRRK 73 (254)
T ss_pred cEEEEeeeEEEECCE--------eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceE-EEcccccccccc
Confidence 359999999999742 58999 99999999999999999999999999999999999997 6543
Q ss_pred --eEEEEcCCC---CCCCCCHHHHhccCCcCCH-----------HHHHHHHHHcccchHHHhhcCCCccccCCCCCCCCh
Q 000720 660 --KKAYVPQSS---WIQTGTIRENILFGKDMRQ-----------SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSG 723 (1333)
Q Consensus 660 --~iayv~Q~~---~i~~~Tv~enI~~g~~~~~-----------~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSG 723 (1333)
+||||||.. |-|+.||+|-+.+|..... +..+++++..++. ...+++..+|||
T Consensus 74 ~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~-----------~~~~r~i~~LSG 142 (254)
T COG1121 74 RLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGME-----------DLRDRQIGELSG 142 (254)
T ss_pred CCeEEEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCch-----------hhhCCcccccCc
Confidence 599999964 6788999999999854322 3344444444433 123467789999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhh-cCCEEEEEeCCeEEEccC
Q 000720 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGK 802 (1333)
Q Consensus 724 GQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~-~aD~i~vl~~G~i~~~g~ 802 (1333)
||+|||.|||||+++||+++|||||+|+|+.++..+++.+.+...+|+||++||||++.+. ++|+|+.|+ +++...|+
T Consensus 143 GQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln-~~~~~~G~ 221 (254)
T COG1121 143 GQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLN-RHLIASGP 221 (254)
T ss_pred HHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEc-CeeEeccC
Confidence 9999999999999999999999999999999988887644444445999999999999875 599999996 57788999
Q ss_pred hHHHHh
Q 000720 803 YEDLIA 808 (1333)
Q Consensus 803 ~~~l~~ 808 (1333)
+++..+
T Consensus 222 ~~~~~~ 227 (254)
T COG1121 222 PEEVLT 227 (254)
T ss_pred hhhccC
Confidence 999876
No 105
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=100.00 E-value=1.1e-36 Score=386.22 Aligned_cols=422 Identities=12% Similarity=0.009 Sum_probs=327.1
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHhcccccccch---h----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 893 VPVILLCQVLFQALQMGSNYWIAWATDEKRKVSR---E----QLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLN 965 (1333)
Q Consensus 893 ~~~~ll~~~l~~~~~~~~~~wl~~~~~~~~~~~~---~----~~l~vy~~l~~~~~i~~~~~~~~~~~~~~~~s~~L~~~ 965 (1333)
+++.+++.++...+.+..+++.+...+.-...+. . .++.+++++.++..+..++...+......+..+++|++
T Consensus 98 l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~~~~~f~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~ 177 (659)
T TIGR00954 98 LILIAFLLVSRTYLSVYVATLDGQIESSIVRRSPRNFAWILFKWFLIAPPASFINSAIKYLLKELKLRFRVRLTRYLYSK 177 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555566777788888888766643211111 1 12223334444555556666667777788888889999
Q ss_pred HHHHHhcCccccccccCcchhHHHHhccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHH
Q 000720 966 MITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQ-AAWQVFPLFLVILGISIWYQ 1044 (1333)
Q Consensus 966 ll~~il~ap~~fFd~tp~GrIlnRfs~Di~~vd~~l~~~l~~~~~~~~~~l~~ivv~~~-~~~~l~lv~ipl~~~~~~~~ 1044 (1333)
.+++....++.|||+ ++|++++|+++|++.+.+.+...+..++..++.+++.++++.. .+|.++++++..+++..++.
T Consensus 178 ~~~~~~~~~~~~~d~-~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~L~~~~~~~l~l~~l~~~~l~~~i~ 256 (659)
T TIGR00954 178 YLSGFTFYKVSNLDS-RIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKLLTALGSVGPAGLFAYLFATGVVL 256 (659)
T ss_pred HhCCCceEEeccCCC-CCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 999888899999997 8899999999999999999999999999999999988887776 89999888888888888889
Q ss_pred HHHHHHHHHHHHHHhHhhchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 1045 AYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFA 1124 (1333)
Q Consensus 1045 ~~y~~~srel~rl~~~~~spl~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~ll~~~~ 1124 (1333)
+++.+..+++.+..+...+...+.++|.++|+.+||+|+.|+.+.+++.+..++..+..........++....+++...+
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~ 336 (659)
T TIGR00954 257 TKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEHLNLIIKFRFSYGFLDNIVAKYT 336 (659)
T ss_pred HHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988888888888888877765432
Q ss_pred HH--HHHHH-H-HhccC----CCCChHH-HHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCC--
Q 000720 1125 FF--LVLII-L-VTLPR----SAIDPSL-AGLAATY---GLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAP-- 1190 (1333)
Q Consensus 1125 ~~--~~~~~-~-~~~~~----~~~~~g~-~gl~l~y---~l~l~~~l~~~v~~~~~le~~~~SveRI~~~~~~p~E~~-- 1190 (1333)
.. ..++. . +.... +.++.|. ++..++| ..++...+..+.....++....++.+|+.++++.++|..
T Consensus 337 ~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i~~~~~~~~Ri~~ll~~~~~~~~~ 416 (659)
T TIGR00954 337 WSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDMTRLAGFTARVDTLLQVLDDVKSG 416 (659)
T ss_pred HHHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 11 11111 1 12111 4455553 3434444 445577778888899999999999999999987543211
Q ss_pred -----cccC--CC-----CCC------CCCCCcccEEEEEEEEEECCCCCCccccceEEecCCcEEEEECCCCccHHHHH
Q 000720 1191 -----LVIK--NS-----RPS------PEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLI 1252 (1333)
Q Consensus 1191 -----~~~~--~~-----~~~------~~wp~~G~I~f~nVsf~Y~~~~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi 1252 (1333)
...+ +. +++ ......|.|+|+||+++|+.+. ++|+|+||+|++||++||||++|||||||+
T Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~~~-~il~~isl~i~~Ge~~~IvG~nGsGKSTLl 495 (659)
T TIGR00954 417 NFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPNGD-VLIESLSFEVPSGNHLLICGPNGCGKSSLF 495 (659)
T ss_pred cccccccccccccccccccccccccccccccCCCeEEEEeeEEECCCCC-eeeecceEEECCCCEEEEECCCCCCHHHHH
Confidence 0000 00 000 0001346799999999996443 599999999999999999999999999999
Q ss_pred HHHhcccCCCCCeEEEcCEeCCCCChHHHhhcCeEecccccccccchhhhcCCC--------CCCCHHHHHHHHHhCCCC
Q 000720 1253 QALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPL--------EQHSDQEIWEVKISKLLT 1324 (1333)
Q Consensus 1253 ~lL~Rl~ep~~G~I~IDGvdI~~i~l~~LRs~isiVpQdp~LF~GTIR~NLdp~--------~~~sDeeI~~aL~~~~L~ 1324 (1333)
++|.|+++|++|+|.+|+ |+++++|||||.+|++|+||||... .+.+|++++++|++++|.
T Consensus 496 ~lL~Gl~~~~~G~i~~~~-----------~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~ 564 (659)
T TIGR00954 496 RILGELWPVYGGRLTKPA-----------KGKLFYVPQRPYMTLGTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLT 564 (659)
T ss_pred HHHhCCCCCCCCeEeecC-----------CCcEEEECCCCCCCCcCHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCH
Confidence 999999999999999874 6789999999999999999999742 346789999999999997
Q ss_pred ccc
Q 000720 1325 HKS 1327 (1333)
Q Consensus 1325 ~~~ 1327 (1333)
+..
T Consensus 565 ~~~ 567 (659)
T TIGR00954 565 HIL 567 (659)
T ss_pred HHH
Confidence 643
No 106
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=1.7e-38 Score=360.48 Aligned_cols=221 Identities=25% Similarity=0.354 Sum_probs=193.4
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC---------
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g--------- 659 (1333)
.|+++|++++|+.. ..+.|++ ||+|++||+++|+|+||||||||+++|+|+++ .+|++ .++|
T Consensus 2 ~i~~~nls~~~~~~------~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I-~i~g~~i~~~~~~ 73 (275)
T cd03289 2 QMTVKDLTAKYTEG------GNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDI-QIDGVSWNSVPLQ 73 (275)
T ss_pred eEEEEEEEEEeCCC------CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEE-EECCEEhhhCCHH
Confidence 48999999999753 2468999 99999999999999999999999999999998 78986 6665
Q ss_pred ----eEEEEcCCCCCCCCCHHHHhccCCcCCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHH
Q 000720 660 ----KKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAV 735 (1333)
Q Consensus 660 ----~iayv~Q~~~i~~~Tv~enI~~g~~~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl 735 (1333)
+++|+||+|+++++|++||+........++..+.++.+++...+..+|.+.++.+++.|.+||||||||++||||+
T Consensus 74 ~lr~~i~~v~q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRal 153 (275)
T cd03289 74 KWRKAFGVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSV 153 (275)
T ss_pred HHhhhEEEECCCcccchhhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHH
Confidence 4799999999999999999964334556677788889999888889999999999999999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhcCCEEEEEeCCeEEEccChHHHHhhcchHHH
Q 000720 736 YSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELV 815 (1333)
Q Consensus 736 ~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~aD~i~vl~~G~i~~~g~~~~l~~~~~~~~~ 815 (1333)
+++|+|+||||||++||+.+.+.+.+ .++...+++|+|+|||+++.+..||+|++|++|++++.|+++++.+ ....+.
T Consensus 154 l~~p~illlDEpts~LD~~~~~~l~~-~l~~~~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~-~~~~~~ 231 (275)
T cd03289 154 LSKAKILLLDEPSAHLDPITYQVIRK-TLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLN-EKSHFK 231 (275)
T ss_pred hcCCCEEEEECccccCCHHHHHHHHH-HHHHhcCCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhh-CcHHHH
Confidence 99999999999999999999776655 4555556899999999999988899999999999999999999988 445555
Q ss_pred HHHHh
Q 000720 816 RQMKA 820 (1333)
Q Consensus 816 ~~~~~ 820 (1333)
.++..
T Consensus 232 ~~~~~ 236 (275)
T cd03289 232 QAISP 236 (275)
T ss_pred HHHhh
Confidence 55543
No 107
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=1.2e-38 Score=336.27 Aligned_cols=204 Identities=29% Similarity=0.430 Sum_probs=171.1
Q ss_pred CccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC-------
Q 000720 588 DVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG------- 659 (1333)
Q Consensus 588 ~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g------- 659 (1333)
+..|+++++++++.++ .++++ ||+|++||+++|+||+||||||||++|.|+++|++|++ .++|
T Consensus 6 ~~~I~vr~v~~~fG~~--------~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI-~i~G~~i~~ls 76 (263)
T COG1127 6 EPLIEVRGVTKSFGDR--------VILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEI-LIDGEDIPQLS 76 (263)
T ss_pred cceEEEeeeeeecCCE--------EEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeE-EEcCcchhccC
Confidence 4579999999999654 78999 99999999999999999999999999999999999997 6665
Q ss_pred ---------eEEEEcCCCCCCC-CCHHHHhccCCc----CCHHHHHH----HHHHcccchH-HHhhcCCCccccCCCCCC
Q 000720 660 ---------KKAYVPQSSWIQT-GTIRENILFGKD----MRQSFYEE----VLEGCALNQD-IEMWADGDLSVVGERGIN 720 (1333)
Q Consensus 660 ---------~iayv~Q~~~i~~-~Tv~enI~~g~~----~~~~~~~~----v~~~~~l~~d-~~~~~~g~~t~ig~~g~~ 720 (1333)
++|+++|+.-+|+ .||+||+.|... ..+...++ -++.++|..+ .+ ..+.+
T Consensus 77 ~~~~~~ir~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~-----------~~PsE 145 (263)
T COG1127 77 EEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAAD-----------LYPSE 145 (263)
T ss_pred HHHHHHHHhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhh-----------hCchh
Confidence 4799999988875 699999999632 23333333 2455666554 33 34679
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC--CCeEEEecCchhhhh-cCCEEEEEeCCeE
Q 000720 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTHQLEFLD-AADLVLVMKDGKI 797 (1333)
Q Consensus 721 LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~--~~TvIlvtH~~~~l~-~aD~i~vl~~G~i 797 (1333)
||||+++|++||||++.||+++++||||+||||.++. .++++++.+.+ +.|+|+||||++.+. .||+|+++.||+|
T Consensus 146 LSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~-~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv 224 (263)
T COG1127 146 LSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAG-VIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKV 224 (263)
T ss_pred hcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHH-HHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEE
Confidence 9999999999999999999999999999999998765 55677766654 789999999999875 4999999999999
Q ss_pred EEccChHHHHhhcch
Q 000720 798 EQSGKYEDLIADQNS 812 (1333)
Q Consensus 798 ~~~g~~~~l~~~~~~ 812 (1333)
+..|+++|+.+..+.
T Consensus 225 ~~~Gt~~el~~sd~P 239 (263)
T COG1127 225 IAEGTPEELLASDDP 239 (263)
T ss_pred EEeCCHHHHHhCCCH
Confidence 999999999884443
No 108
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.7e-38 Score=361.12 Aligned_cols=206 Identities=30% Similarity=0.406 Sum_probs=172.7
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC---------
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g--------- 659 (1333)
.|+++|++.+|.+. . ++++ |++|++||+++++|||||||||||++|+|+.+|++|++ .++|
T Consensus 3 ~i~l~~v~K~yg~~-------~-~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I-~i~g~~vt~l~P~ 73 (338)
T COG3839 3 ELELKNVRKSFGSF-------E-VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEI-LIDGRDVTDLPPE 73 (338)
T ss_pred EEEEeeeEEEcCCc-------e-eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE-EECCEECCCCChh
Confidence 58999999999753 2 8999 99999999999999999999999999999999999996 7766
Q ss_pred --eEEEEcCCCCC-CCCCHHHHhccCCcCC-------HHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHH
Q 000720 660 --KKAYVPQSSWI-QTGTIRENILFGKDMR-------QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRI 729 (1333)
Q Consensus 660 --~iayv~Q~~~i-~~~Tv~enI~~g~~~~-------~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv 729 (1333)
.+|+|+|+.-+ +.+||+|||.|+.... +++.+++.+..++.+. +++++.+|||||||||
T Consensus 74 ~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~l-----------L~r~P~~LSGGQrQRV 142 (338)
T COG3839 74 KRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHL-----------LNRKPLQLSGGQRQRV 142 (338)
T ss_pred HCCEEEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhH-----------HhcCcccCChhhHHHH
Confidence 47999999876 5679999999997654 2344445554444433 3467889999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEecCchhhhh-cCCEEEEEeCCeEEEccChHHHH
Q 000720 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS-QKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKYEDLI 807 (1333)
Q Consensus 730 ~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~-~~TvIlvtH~~~~l~-~aD~i~vl~~G~i~~~g~~~~l~ 807 (1333)
|||||+.++|+++|||||+|+||++.+..+-.++.+...+ +.|+|+||||..++. -+|+|++|++|+|.+.|++.|+.
T Consensus 143 AlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely 222 (338)
T COG3839 143 ALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELY 222 (338)
T ss_pred HHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHh
Confidence 9999999999999999999999999988777665443333 689999999997765 59999999999999999999998
Q ss_pred hhcchHHH
Q 000720 808 ADQNSELV 815 (1333)
Q Consensus 808 ~~~~~~~~ 815 (1333)
+++...+.
T Consensus 223 ~~P~n~fV 230 (338)
T COG3839 223 ERPANLFV 230 (338)
T ss_pred hCccchhh
Confidence 75554443
No 109
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.4e-39 Score=347.34 Aligned_cols=206 Identities=33% Similarity=0.426 Sum_probs=169.8
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC---------
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g--------- 659 (1333)
.|.++|.+..|+.- +.+.| +++|+.||.+|+.|||||||||||++|+|+..|+.|.+ .++|
T Consensus 2 ~i~i~~~~~~~~~~--------~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I-~~~~~~l~D~~~~ 72 (345)
T COG1118 2 SIRINNVKKRFGAF--------GALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRI-RLNGRVLFDVSNL 72 (345)
T ss_pred ceeehhhhhhcccc--------cccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceE-EECCEeccchhcc
Confidence 36778888888643 56778 99999999999999999999999999999999999986 6655
Q ss_pred -----eEEEEcCCCCC-CCCCHHHHhccCCcCC---------HHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChH
Q 000720 660 -----KKAYVPQSSWI-QTGTIRENILFGKDMR---------QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGG 724 (1333)
Q Consensus 660 -----~iayv~Q~~~i-~~~Tv~enI~~g~~~~---------~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGG 724 (1333)
+||||+|+.-+ +.+||.|||.||.+.. +.+..+.++.|.|..- -+..+.+||||
T Consensus 73 ~~~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~l-----------a~ryP~QLSGG 141 (345)
T COG1118 73 AVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGL-----------ADRYPAQLSGG 141 (345)
T ss_pred chhhcceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccch-----------hhcCchhcChH
Confidence 47999999865 4689999999997433 2344455666655421 12578899999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEecCchhhh-hcCCEEEEEeCCeEEEccC
Q 000720 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS-QKTVLYTTHQLEFL-DAADLVLVMKDGKIEQSGK 802 (1333)
Q Consensus 725 QkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~-~~TvIlvtH~~~~l-~~aD~i~vl~~G~i~~~g~ 802 (1333)
|||||||||||+.+|+++||||||+|||++.++.+-..+.+-..+ |.|+++||||.++. +.||+|++|++|+|.+.|+
T Consensus 142 QrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~ 221 (345)
T COG1118 142 QRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGP 221 (345)
T ss_pred HHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCC
Confidence 999999999999999999999999999999988775544433334 78999999999886 5699999999999999999
Q ss_pred hHHHHhhcchHHH
Q 000720 803 YEDLIADQNSELV 815 (1333)
Q Consensus 803 ~~~l~~~~~~~~~ 815 (1333)
++|+...++..+.
T Consensus 222 p~ev~~~P~s~fV 234 (345)
T COG1118 222 PDEVYDHPASRFV 234 (345)
T ss_pred HHHHhcCCCccce
Confidence 9999876655443
No 110
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=1.2e-37 Score=387.86 Aligned_cols=169 Identities=28% Similarity=0.368 Sum_probs=134.7
Q ss_pred cccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEE-----------ECC---------------eEEE
Q 000720 611 TIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIK-----------VHG---------------KKAY 663 (1333)
Q Consensus 611 ~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~-----------~~g---------------~iay 663 (1333)
...|++ + .+++||+++|+||||||||||+++|+|+++|++|++ . ++| +++|
T Consensus 87 ~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i-~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~ 164 (590)
T PRK13409 87 GFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDY-EEEPSWDEVLKRFRGTELQNYFKKLYNGEIKVVH 164 (590)
T ss_pred ceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccc-cCCCcHHHHHHHhCChHHHHHHHHHhccCcceee
Confidence 467999 9 899999999999999999999999999999999986 3 333 2354
Q ss_pred EcC----CCCCCCCCHHHHhccCCcCCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHHccCC
Q 000720 664 VPQ----SSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNS 739 (1333)
Q Consensus 664 v~Q----~~~i~~~Tv~enI~~g~~~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~ 739 (1333)
.+| .|.++.+|++||+.... ..++.+++++..++.. ..++...+||||||||++||||++++|
T Consensus 165 ~~q~~~~~p~~~~~tv~e~l~~~~--~~~~~~~~l~~l~l~~-----------~~~~~~~~LSgGe~qrv~ia~al~~~p 231 (590)
T PRK13409 165 KPQYVDLIPKVFKGKVRELLKKVD--ERGKLDEVVERLGLEN-----------ILDRDISELSGGELQRVAIAAALLRDA 231 (590)
T ss_pred cccchhhhhhhhcchHHHHHHhhh--HHHHHHHHHHHcCCch-----------hhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence 444 56666789999997421 1233445555554432 224577899999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeCC
Q 000720 740 DVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDG 795 (1333)
Q Consensus 740 ~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~G 795 (1333)
++|||||||++||+....++.+.+ +.+.+++|+|+||||++.+.. ||+|++|++|
T Consensus 232 ~lllLDEPts~LD~~~~~~l~~~i-~~l~~g~tvIivsHd~~~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 232 DFYFFDEPTSYLDIRQRLNVARLI-RELAEGKYVLVVEHDLAVLDYLADNVHIAYGE 287 (590)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHH-HHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 999999999999999988887654 444348999999999999866 9999999763
No 111
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=4.1e-37 Score=350.48 Aligned_cols=231 Identities=36% Similarity=0.622 Sum_probs=195.5
Q ss_pred HHHHHhcccCCCCCCCCCCCCCCCccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHH
Q 000720 565 RIQEFIKEDNQKKPITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSI 643 (1333)
Q Consensus 565 RI~~fL~~~e~~~~~~~~~~~~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~i 643 (1333)
.+.+.|..+.+++.-. +..+.+..|+++|+++.+ .+.+++ ||++++||+++|+|+||||||||+++|
T Consensus 16 ~~~~~~~~~~~~~~~~--~~~~~~~~l~i~nls~~~----------~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I 83 (282)
T cd03291 16 GFGELLEKAKQENNDR--KHSSDDNNLFFSNLCLVG----------APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLI 83 (282)
T ss_pred HHHHHHhccccccccc--ccCCCCCeEEEEEEEEec----------ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 3445555444332212 223445679999999952 257999 999999999999999999999999999
Q ss_pred hCCCcCCCCcEEEECCeEEEEcCCCCCCCCCHHHHhccCCcCCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCCh
Q 000720 644 LGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSG 723 (1333)
Q Consensus 644 lG~~~~~~G~~i~~~g~iayv~Q~~~i~~~Tv~enI~~g~~~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSG 723 (1333)
+|+++|.+|++ .++|+++|++|++++++.|++||+.++......++.+.++++.+.+.+..++.+..+.+++++.+|||
T Consensus 84 ~Gl~~p~~G~I-~i~g~i~yv~q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSg 162 (282)
T cd03291 84 LGELEPSEGKI-KHSGRISFSSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSG 162 (282)
T ss_pred hCCCCCCCcEE-EECCEEEEEeCcccccccCHHHHhhcccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCH
Confidence 99999999996 89999999999999988899999998765444455667777777777778888888888889999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhcCCEEEEEeCCeEEEccCh
Q 000720 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKY 803 (1333)
Q Consensus 724 GQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~aD~i~vl~~G~i~~~g~~ 803 (1333)
|||||++||||++.+|+++||||||++||+.+.+.+.+.+++...+++|+|++||+++.+..||++++|++|++++.|+.
T Consensus 163 Gq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l~~G~i~~~g~~ 242 (282)
T cd03291 163 GQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTF 242 (282)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEEECCEEEEECCH
Confidence 99999999999999999999999999999999887877665555568999999999999888999999999999999999
Q ss_pred HHHHh
Q 000720 804 EDLIA 808 (1333)
Q Consensus 804 ~~l~~ 808 (1333)
+++.+
T Consensus 243 ~~~~~ 247 (282)
T cd03291 243 SELQS 247 (282)
T ss_pred HHHHh
Confidence 98875
No 112
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=3.6e-38 Score=360.23 Aligned_cols=208 Identities=32% Similarity=0.423 Sum_probs=174.8
Q ss_pred ccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECCe-------
Q 000720 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK------- 660 (1333)
Q Consensus 589 ~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g~------- 660 (1333)
..++++|++.+|.+ ...++| ||+|++||+++++|||||||||+|++|+|+..|++|++ .++|+
T Consensus 4 ~~l~i~~v~k~yg~--------~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I-~l~G~~i~~lpp 74 (352)
T COG3842 4 PALEIRNVSKSFGD--------FTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEI-LLDGEDITDVPP 74 (352)
T ss_pred ceEEEEeeeeecCC--------eeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceE-EECCEECCCCCh
Confidence 46999999999973 478999 99999999999999999999999999999999999986 77764
Q ss_pred ----EEEEcCCCCCC-CCCHHHHhccCCcCC-----H---HHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHH
Q 000720 661 ----KAYVPQSSWIQ-TGTIRENILFGKDMR-----Q---SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQ 727 (1333)
Q Consensus 661 ----iayv~Q~~~i~-~~Tv~enI~~g~~~~-----~---~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkq 727 (1333)
+++|+|+.-+| ..||+|||.||.... + ++.++.++..++.. .-.+++.+|||||||
T Consensus 75 ~kR~ig~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~-----------~~~R~p~qLSGGQqQ 143 (352)
T COG3842 75 EKRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEG-----------FADRKPHQLSGGQQQ 143 (352)
T ss_pred hhcccceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchh-----------hhhhChhhhChHHHH
Confidence 69999998765 689999999997622 1 23344444443332 223688999999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEecCchhhh-hcCCEEEEEeCCeEEEccChHH
Q 000720 728 RIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFL-DAADLVLVMKDGKIEQSGKYED 805 (1333)
Q Consensus 728 Rv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~-~~~TvIlvtH~~~~l-~~aD~i~vl~~G~i~~~g~~~~ 805 (1333)
||||||||..+|+++|||||+|+||.+.++++-.++.+... .|.|.|+||||-++. ..+|||++|++|+|.+.|+++|
T Consensus 144 RVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~e 223 (352)
T COG3842 144 RVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEE 223 (352)
T ss_pred HHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHH
Confidence 99999999999999999999999999999888777654433 389999999999875 6699999999999999999999
Q ss_pred HHhhcchHHHH
Q 000720 806 LIADQNSELVR 816 (1333)
Q Consensus 806 l~~~~~~~~~~ 816 (1333)
+...+...+..
T Consensus 224 iY~~P~~~fVA 234 (352)
T COG3842 224 IYERPATRFVA 234 (352)
T ss_pred HhhCcchHHHH
Confidence 99866655544
No 113
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.6e-38 Score=326.67 Aligned_cols=206 Identities=24% Similarity=0.366 Sum_probs=168.8
Q ss_pred CccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCC-----CcEEEECC--
Q 000720 588 DVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRIS-----GAAIKVHG-- 659 (1333)
Q Consensus 588 ~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~-----G~~i~~~g-- 659 (1333)
...++++|.++.|.+ ...|++ |++|++++++|++||+||||||||+++....+..+ |++ .++|
T Consensus 5 ~~~~~~~~l~~yYg~--------~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v-~~~g~n 75 (253)
T COG1117 5 IPAIEVRDLNLYYGD--------KHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEV-LLDGKN 75 (253)
T ss_pred cceeEecceeEEECc--------hhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEE-EECCee
Confidence 357899999999974 367999 99999999999999999999999999999887766 443 4443
Q ss_pred -------------eEEEEcCCCCCCCCCHHHHhccCCcCCH---HHHHHH----HHHcccchHHHhhcCCCccccCCCCC
Q 000720 660 -------------KKAYVPQSSWIQTGTIRENILFGKDMRQ---SFYEEV----LEGCALNQDIEMWADGDLSVVGERGI 719 (1333)
Q Consensus 660 -------------~iayv~Q~~~i~~~Tv~enI~~g~~~~~---~~~~~v----~~~~~l~~d~~~~~~g~~t~ig~~g~ 719 (1333)
++|+|+|.|-.|..||+|||.+|..... ...+++ ++..+|-+... ..+.+.+.
T Consensus 76 i~~~~~d~~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVK-------DrL~~sa~ 148 (253)
T COG1117 76 IYDPKVDVVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVK-------DRLHKSAL 148 (253)
T ss_pred ccCCCCCHHHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhH-------HHhhCCcc
Confidence 4699999999999999999999965332 222333 33333322221 13456788
Q ss_pred CCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeCCeEE
Q 000720 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIE 798 (1333)
Q Consensus 720 ~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~ 798 (1333)
.|||||+||++|||||+-+|+|+|||||||||||....+| ++++..++++-|||+|||+|+.... +|+...+.+|+++
T Consensus 149 ~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kI-EeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~Lv 227 (253)
T COG1117 149 GLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKI-EELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELV 227 (253)
T ss_pred CCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHH-HHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEE
Confidence 9999999999999999999999999999999999887766 5677788888899999999998755 9999999999999
Q ss_pred EccChHHHHhhc
Q 000720 799 QSGKYEDLIADQ 810 (1333)
Q Consensus 799 ~~g~~~~l~~~~ 810 (1333)
+.|+.+++..++
T Consensus 228 E~g~T~~iF~~P 239 (253)
T COG1117 228 EFGPTDKIFTNP 239 (253)
T ss_pred EEcCHHhhhcCc
Confidence 999999998743
No 114
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=2.2e-37 Score=333.07 Aligned_cols=193 Identities=31% Similarity=0.404 Sum_probs=156.4
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC----------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g---------- 659 (1333)
++++|++..|.... .....|++ ||+|++||+++|+||+||||||||++|.|+.+|++|.+ .++|
T Consensus 2 i~~~~v~k~y~~~~----~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v-~i~g~d~~~l~~~~ 76 (226)
T COG1136 2 IELKNVSKIYGLGG----EKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEV-LINGKDLTKLSEKE 76 (226)
T ss_pred cEEeeeEEEeccCC----cceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceE-EECCEEcCcCCHHH
Confidence 56788888887541 22578999 99999999999999999999999999999999999986 6665
Q ss_pred -------eEEEEcCCCC-CCCCCHHHHhccCCcCC-------HHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChH
Q 000720 660 -------KKAYVPQSSW-IQTGTIRENILFGKDMR-------QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGG 724 (1333)
Q Consensus 660 -------~iayv~Q~~~-i~~~Tv~enI~~g~~~~-------~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGG 724 (1333)
++|||+|+.. +++.|++|||.+...+. .++.++.++..++.+. ....++.+||||
T Consensus 77 ~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~----------~~~~~p~eLSGG 146 (226)
T COG1136 77 LAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDR----------LLKKKPSELSGG 146 (226)
T ss_pred HHHHHHHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhh----------hccCCchhcCHH
Confidence 3799999975 57889999999642221 2223333333333221 112568899999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEecCchhhhhcCCEEEEEeCCeEE
Q 000720 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDAADLVLVMKDGKIE 798 (1333)
Q Consensus 725 QkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~-~~~TvIlvtH~~~~l~~aD~i~vl~~G~i~ 798 (1333)
|||||||||||+.+|+++|.||||.+||.++++.+++.+..... .|+|+|+||||.+....|||++.|+||++.
T Consensus 147 qqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~ 221 (226)
T COG1136 147 QQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIE 221 (226)
T ss_pred HHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCeee
Confidence 99999999999999999999999999999999999886554443 488999999999999999999999999954
No 115
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=3.9e-37 Score=336.72 Aligned_cols=200 Identities=54% Similarity=0.981 Sum_probs=178.5
Q ss_pred EEEeeeEEEcCCcccccCCC--cccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECCeEEEEcCC
Q 000720 591 IDIEAGEYAWDAREENFKKP--TIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQS 667 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~--~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g~iayv~Q~ 667 (1333)
++++|++++|+.. .. .+.+++ ||++++||+++|+||||||||||+++|+|+.+|++|++ .++|+++|++|+
T Consensus 1 l~~~~l~~~~~~~-----~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i-~~~g~i~~~~q~ 74 (204)
T cd03250 1 ISVEDASFTWDSG-----EQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSV-SVPGSIAYVSQE 74 (204)
T ss_pred CEEeEEEEecCCC-----CccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeE-EEcCEEEEEecC
Confidence 4689999999643 11 368999 99999999999999999999999999999999999996 889999999999
Q ss_pred CCCCCCCHHHHhccCCcCCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCC
Q 000720 668 SWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDP 747 (1333)
Q Consensus 668 ~~i~~~Tv~enI~~g~~~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDEP 747 (1333)
|.+++.|++||+.++...+.+...+..+.+++.+.+...+.|..+.+++++.+||||||||++||||++.+|+++|||||
T Consensus 75 ~~l~~~t~~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP 154 (204)
T cd03250 75 PWIQNGTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDP 154 (204)
T ss_pred chhccCcHHHHhccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 99999999999999866665566677777888888888888988989999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHH-hCCCeEEEecCchhhhhcCCEEEEEeCCe
Q 000720 748 FSAVDAHTGTHLFKQCLMGL-LSQKTVLYTTHQLEFLDAADLVLVMKDGK 796 (1333)
Q Consensus 748 ~saLD~~~~~~l~~~~~~~~-~~~~TvIlvtH~~~~l~~aD~i~vl~~G~ 796 (1333)
|++||++..+.+++.++... .+++|+|++||+++.+..||++++|++|+
T Consensus 155 ~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 155 LSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred cccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 99999999888887666544 34789999999999987799999999985
No 116
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=1.1e-36 Score=341.06 Aligned_cols=210 Identities=30% Similarity=0.458 Sum_probs=178.3
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC----------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g---------- 659 (1333)
|+++|+++.|+.. ..+.+++ ||++++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 1 i~~~~l~~~~~~~------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i-~~~g~~~~~~~~~~ 73 (237)
T cd03252 1 ITFEHVRFRYKPD------GPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRV-LVDGHDLALADPAW 73 (237)
T ss_pred CEEEEEEEecCCC------CccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEE-EECCeehHhcCHHH
Confidence 4689999999643 2468999 99999999999999999999999999999999999986 6655
Q ss_pred ---eEEEEcCCCCCCCCCHHHHhccCCc-CCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHH
Q 000720 660 ---KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAV 735 (1333)
Q Consensus 660 ---~iayv~Q~~~i~~~Tv~enI~~g~~-~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl 735 (1333)
.++|++|++++++.|++||+.++.. .......+..+...+.+.++.++.|..+..++++.+||||||||++||||+
T Consensus 74 ~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral 153 (237)
T cd03252 74 LRRQVGVVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARAL 153 (237)
T ss_pred HhhcEEEEcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHH
Confidence 3799999999888999999988653 223333334454555555666777777777889999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhcCCEEEEEeCCeEEEccChHHHHh
Q 000720 736 YSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIA 808 (1333)
Q Consensus 736 ~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~aD~i~vl~~G~i~~~g~~~~l~~ 808 (1333)
+.+|+++||||||++||+...+.+.+. ++...+++|+|++||+++++..||++++|++|++++.|+++++.+
T Consensus 154 ~~~p~llllDEP~~~LD~~~~~~l~~~-l~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 225 (237)
T cd03252 154 IHNPRILIFDEATSALDYESEHAIMRN-MHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLA 225 (237)
T ss_pred hhCCCEEEEeCCcccCCHHHHHHHHHH-HHHhcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999999998877765 444456899999999999987899999999999999999998876
No 117
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2e-37 Score=326.16 Aligned_cols=204 Identities=26% Similarity=0.375 Sum_probs=168.0
Q ss_pred ccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC--------
Q 000720 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------- 659 (1333)
Q Consensus 589 ~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g-------- 659 (1333)
..|+++|++..||.+ ...|++ |++|++||+++|+||+||||||||++|.|+.+|++|++ .++|
T Consensus 2 ~~i~~~nl~k~yp~~-------~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i-~~~g~~i~~~~~ 73 (258)
T COG3638 2 MMIEVKNLSKTYPGG-------HQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEI-LFNGVQITKLKG 73 (258)
T ss_pred ceEEEeeeeeecCCC-------ceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceE-Eecccchhccch
Confidence 358999999999854 578999 99999999999999999999999999999999999986 6654
Q ss_pred --------eEEEEcCCCCC-CCCCHHHHhccCCcCCHHH------------HHHHHHHcccchHHHhhcCCCccccCCCC
Q 000720 660 --------KKAYVPQSSWI-QTGTIRENILFGKDMRQSF------------YEEVLEGCALNQDIEMWADGDLSVVGERG 718 (1333)
Q Consensus 660 --------~iayv~Q~~~i-~~~Tv~enI~~g~~~~~~~------------~~~v~~~~~l~~d~~~~~~g~~t~ig~~g 718 (1333)
++||++|++-+ +..||.+|++.|+--+..+ ...++++. + .-|.....-.+.
T Consensus 74 k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aL------e--rvgi~~~A~qra 145 (258)
T COG3638 74 KELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDAL------E--RVGILDKAYQRA 145 (258)
T ss_pred HHHHHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHH------H--HcCcHHHHHHHh
Confidence 47999999864 6789999999886433222 22222211 1 112222233677
Q ss_pred CCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCeEEEecCchhhh-hcCCEEEEEeCCe
Q 000720 719 INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-LSQKTVLYTTHQLEFL-DAADLVLVMKDGK 796 (1333)
Q Consensus 719 ~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~-~~~~TvIlvtH~~~~l-~~aD~i~vl~~G~ 796 (1333)
.+|||||+|||+|||||+++|+++|-|||+++|||.+++++++.+.+.. ..|.|+|+.-|+++.+ ++||||+-|++|+
T Consensus 146 ~~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ 225 (258)
T COG3638 146 STLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGR 225 (258)
T ss_pred ccCCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCc
Confidence 8999999999999999999999999999999999999999998665543 3589999999999997 5699999999999
Q ss_pred EEEccChHHHHh
Q 000720 797 IEQSGKYEDLIA 808 (1333)
Q Consensus 797 i~~~g~~~~l~~ 808 (1333)
|+++|+.+|+.+
T Consensus 226 ivfDg~~~el~~ 237 (258)
T COG3638 226 IVFDGPASELTD 237 (258)
T ss_pred EEEeCChhhhhH
Confidence 999999998644
No 118
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.9e-37 Score=336.72 Aligned_cols=200 Identities=31% Similarity=0.446 Sum_probs=171.2
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC---------
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g--------- 659 (1333)
.++++|.+|+|+++ .+.+++ |+++++||.++|+|+||||||||++.+.|+++|++|.+ .++|
T Consensus 3 ~i~~~~l~~~y~~~-------~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v-~~~g~~~~~~~~~ 74 (235)
T COG1122 3 MIEAENLSFRYPGR-------KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEV-LVDGLDTSSEKSL 74 (235)
T ss_pred eEEEEEEEEEcCCC-------ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEE-EECCeeccchhhH
Confidence 57899999999753 578999 99999999999999999999999999999999999986 5544
Q ss_pred -----eEEEEcCCC--CCCCCCHHHHhccCCcC---CH----HHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHH
Q 000720 660 -----KKAYVPQSS--WIQTGTIRENILFGKDM---RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (1333)
Q Consensus 660 -----~iayv~Q~~--~i~~~Tv~enI~~g~~~---~~----~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQ 725 (1333)
++|||+|+| .++..||.|.+.||... .. ++.+++++.|++.+. ..+.+.+|||||
T Consensus 75 ~~~~~~vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~-----------~~r~p~~LSGGq 143 (235)
T COG1122 75 LELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEEL-----------LDRPPFNLSGGQ 143 (235)
T ss_pred HHhhcceEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhh-----------ccCCccccCCcc
Confidence 489999999 57889999999998642 22 334455666665432 236778999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEecCchhhhhc-CCEEEEEeCCeEEEccCh
Q 000720 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS-QKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKY 803 (1333)
Q Consensus 726 kqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~-~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~~g~~ 803 (1333)
||||+||.+|+.+|++++||||||+||+...+.+.+.+.+...+ ++|+|++|||++.+.. ||++++|++|+++.+|++
T Consensus 144 kqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p 223 (235)
T COG1122 144 KQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDP 223 (235)
T ss_pred eeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCH
Confidence 99999999999999999999999999999999888755444444 5899999999999765 999999999999999999
Q ss_pred HHHHh
Q 000720 804 EDLIA 808 (1333)
Q Consensus 804 ~~l~~ 808 (1333)
+++.+
T Consensus 224 ~~i~~ 228 (235)
T COG1122 224 AEIFN 228 (235)
T ss_pred HHHhh
Confidence 98876
No 119
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=7e-37 Score=307.76 Aligned_cols=197 Identities=25% Similarity=0.378 Sum_probs=161.4
Q ss_pred EEEeeeEEEcCCcccccCCCcccccCCeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECCe----------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK---------- 660 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g~---------- 660 (1333)
+.++++.|+|... . +.-+++|++||++||+||+||||||||++|+|+..|.+|++ .++|.
T Consensus 2 l~L~~V~~~y~~~-------~--~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i-~i~g~d~t~~~P~~R 71 (231)
T COG3840 2 LALDDVRFSYGHL-------P--MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEI-LINGVDHTASPPAER 71 (231)
T ss_pred ccccceEEeeCcc-------e--EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceE-EEcCeecCcCCcccC
Confidence 4567888988653 1 21178999999999999999999999999999999999996 77763
Q ss_pred -EEEEcCCCCCCC-CCHHHHhccCCc----C---CHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHH
Q 000720 661 -KAYVPQSSWIQT-GTIRENILFGKD----M---RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQL 731 (1333)
Q Consensus 661 -iayv~Q~~~i~~-~Tv~enI~~g~~----~---~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~L 731 (1333)
++.++|+..+|. .||.+||.+|.. . ++++.+.+....++....+ +.+.+|||||||||+|
T Consensus 72 PVSmlFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~-----------RLP~~LSGGqRQRvAL 140 (231)
T COG3840 72 PVSMLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLK-----------RLPGELSGGQRQRVAL 140 (231)
T ss_pred ChhhhhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhh-----------hCccccCchHHHHHHH
Confidence 689999988875 699999999853 2 2344455555556554444 4456999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCeEEEecCchhhhhc-CCEEEEEeCCeEEEccChHHHHh
Q 000720 732 ARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-LSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDLIA 808 (1333)
Q Consensus 732 ARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~-~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~~g~~~~l~~ 808 (1333)
||++.++.+|+|||||||+|||.-+.+....+.... .++.|+++|||+++.+.. +|+++++++|+|.++|+.+++..
T Consensus 141 ARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~ 219 (231)
T COG3840 141 ARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLS 219 (231)
T ss_pred HHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhc
Confidence 999999999999999999999998777665333322 357899999999998755 99999999999999999999876
No 120
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.8e-36 Score=355.97 Aligned_cols=206 Identities=27% Similarity=0.384 Sum_probs=169.3
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC---------
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g--------- 659 (1333)
.++++|++++|+.+ ...|++ ||++++||+++|+|||||||||||++|+|+.+|++|++ .++|
T Consensus 3 ~l~i~~l~~~~~~~-------~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I-~~~g~~i~~~~~~ 74 (356)
T PRK11650 3 GLKLQAVRKSYDGK-------TQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEI-WIGGRVVNELEPA 74 (356)
T ss_pred EEEEEeEEEEeCCC-------CEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEE-EECCEECCCCCHH
Confidence 38899999999422 358999 99999999999999999999999999999999999986 6665
Q ss_pred --eEEEEcCCCCCC-CCCHHHHhccCCcC---CH----HHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHH
Q 000720 660 --KKAYVPQSSWIQ-TGTIRENILFGKDM---RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRI 729 (1333)
Q Consensus 660 --~iayv~Q~~~i~-~~Tv~enI~~g~~~---~~----~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv 729 (1333)
.+|||+|++.++ +.||+|||.|+... .+ ++.+++++..++.+ ..++++.+|||||||||
T Consensus 75 ~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~-----------~~~~~~~~LSgGq~QRv 143 (356)
T PRK11650 75 DRDIAMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEP-----------LLDRKPRELSGGQRQRV 143 (356)
T ss_pred HCCEEEEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChh-----------HhhCChhhCCHHHHHHH
Confidence 489999999876 57999999987542 11 12233344444322 23467789999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEecCchhhhh-cCCEEEEEeCCeEEEccChHHHH
Q 000720 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS-QKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKYEDLI 807 (1333)
Q Consensus 730 ~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~-~~TvIlvtH~~~~l~-~aD~i~vl~~G~i~~~g~~~~l~ 807 (1333)
+|||||+.+|+++|||||||+||+..++++.+.+.+...+ +.|+|+||||.+++. .||+|++|++|++++.|+++++.
T Consensus 144 alARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~ 223 (356)
T PRK11650 144 AMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVY 223 (356)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHH
Confidence 9999999999999999999999999999887765443333 799999999998875 59999999999999999999998
Q ss_pred hhcchHH
Q 000720 808 ADQNSEL 814 (1333)
Q Consensus 808 ~~~~~~~ 814 (1333)
.++...+
T Consensus 224 ~~p~~~~ 230 (356)
T PRK11650 224 EKPASTF 230 (356)
T ss_pred hCCccHH
Confidence 7544333
No 121
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=3.4e-36 Score=340.82 Aligned_cols=220 Identities=29% Similarity=0.363 Sum_probs=188.0
Q ss_pred CccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC-------
Q 000720 588 DVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG------- 659 (1333)
Q Consensus 588 ~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g------- 659 (1333)
...++++|++++|+.. ....+++ ||++++||+++|+|+||||||||+++|+|+++|.+|++ .++|
T Consensus 17 ~~~i~~~~l~~~~~~~------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i-~i~g~~i~~~~ 89 (257)
T cd03288 17 GGEIKIHDLCVRYENN------LKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKI-VIDGIDISKLP 89 (257)
T ss_pred CceEEEEEEEEEeCCC------CCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeE-EECCEEhhhCC
Confidence 3569999999999753 2458999 99999999999999999999999999999999999986 6554
Q ss_pred ------eEEEEcCCCCCCCCCHHHHhccCCcCCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHH
Q 000720 660 ------KKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLAR 733 (1333)
Q Consensus 660 ------~iayv~Q~~~i~~~Tv~enI~~g~~~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LAR 733 (1333)
.++|++|+|++++.|++||+............+.++..++.+.++.++.|.++.+++++.+||||||||++|||
T Consensus 90 ~~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~lar 169 (257)
T cd03288 90 LHTLRSRLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLAR 169 (257)
T ss_pred HHHHhhhEEEECCCCcccccHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHH
Confidence 47999999999889999999765433444556666777777778888888889999999999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhcCCEEEEEeCCeEEEccChHHHHhhcchH
Q 000720 734 AVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNSE 813 (1333)
Q Consensus 734 Al~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~aD~i~vl~~G~i~~~g~~~~l~~~~~~~ 813 (1333)
|++++|++++|||||++||+++.+.+.+ +++...++.|+|++||+++.+..||+|++|++|++++.|+++++.+.....
T Consensus 170 al~~~p~llllDEPt~gLD~~~~~~l~~-~l~~~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~ 248 (257)
T cd03288 170 AFVRKSSILIMDEATASIDMATENILQK-VVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGV 248 (257)
T ss_pred HHhcCCCEEEEeCCccCCCHHHHHHHHH-HHHHhcCCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHHhccchH
Confidence 9999999999999999999998776655 445555689999999999998889999999999999999999887633333
Q ss_pred HH
Q 000720 814 LV 815 (1333)
Q Consensus 814 ~~ 815 (1333)
+.
T Consensus 249 ~~ 250 (257)
T cd03288 249 FA 250 (257)
T ss_pred HH
Confidence 33
No 122
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=3.1e-36 Score=337.70 Aligned_cols=211 Identities=31% Similarity=0.466 Sum_probs=179.5
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC----------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g---------- 659 (1333)
++++|+++.|+.. ...+.+++ ||++++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 1 l~i~~l~~~~~~~-----~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i-~~~g~~~~~~~~~~ 74 (238)
T cd03249 1 IEFKNVSFRYPSR-----PDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEI-LLDGVDIRDLNLRW 74 (238)
T ss_pred CeEEEEEEecCCC-----CCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEE-EECCEehhhcCHHH
Confidence 4689999999753 23468999 99999999999999999999999999999999999986 6655
Q ss_pred ---eEEEEcCCCCCCCCCHHHHhccCCcC-CHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHH
Q 000720 660 ---KKAYVPQSSWIQTGTIRENILFGKDM-RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAV 735 (1333)
Q Consensus 660 ---~iayv~Q~~~i~~~Tv~enI~~g~~~-~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl 735 (1333)
.++|++|++.+++.|++||+.++... ..+...+..+.+++.+.++.++.|..+..+.++.+||||||||++||||+
T Consensus 75 ~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al 154 (238)
T cd03249 75 LRSQIGLVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARAL 154 (238)
T ss_pred HHhhEEEECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHH
Confidence 38999999988888999999987543 23334445566666666677777777778888999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhcCCEEEEEeCCeEEEccChHHHHh
Q 000720 736 YSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIA 808 (1333)
Q Consensus 736 ~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~aD~i~vl~~G~i~~~g~~~~l~~ 808 (1333)
+.+|+++||||||++||++.++.+.+.+ +...+++|+|++||+++.++.||++++|++|++++.|+.+++..
T Consensus 155 ~~~p~llllDEP~~gLD~~~~~~l~~~l-~~~~~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 226 (238)
T cd03249 155 LRNPKILLLDEATSALDAESEKLVQEAL-DRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMA 226 (238)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHHHH-HHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhh
Confidence 9999999999999999999988777644 44447899999999999988899999999999999999888765
No 123
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.8e-36 Score=336.07 Aligned_cols=210 Identities=29% Similarity=0.466 Sum_probs=181.4
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC---------
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g--------- 659 (1333)
.++++|++++|+.+ .+.+++ ||++++||+++|+||||||||||+++|+|+.+|.+|++ .++|
T Consensus 2 ~l~~~~l~~~~~~~-------~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~g~~~~~~~~~ 73 (229)
T cd03254 2 EIEFENVNFSYDEK-------KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQI-LIDGIDIRDISRK 73 (229)
T ss_pred eEEEEEEEEecCCC-------CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEE-EECCEeHHHcCHH
Confidence 47899999999632 358999 99999999999999999999999999999999999986 6654
Q ss_pred ----eEEEEcCCCCCCCCCHHHHhccCCcC-CHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHH
Q 000720 660 ----KKAYVPQSSWIQTGTIRENILFGKDM-RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARA 734 (1333)
Q Consensus 660 ----~iayv~Q~~~i~~~Tv~enI~~g~~~-~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARA 734 (1333)
.++|++|+++++..|++||+.++... ......+.++.+++.+.++.++.|..+..+.++.+||||||||++||||
T Consensus 74 ~~~~~i~~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~a 153 (229)
T cd03254 74 SLRSMIGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARA 153 (229)
T ss_pred HHhhhEEEecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHH
Confidence 37999999998888999999987543 3344555666677777777777788888888999999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhcCCEEEEEeCCeEEEccChHHHHh
Q 000720 735 VYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIA 808 (1333)
Q Consensus 735 l~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~aD~i~vl~~G~i~~~g~~~~l~~ 808 (1333)
++++|+++||||||++||+.+.+.+.+. ++...+++|+|++||+++.++.||++++|++|++++.|+.+++.+
T Consensus 154 l~~~p~llllDEP~~~LD~~~~~~l~~~-l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~ 226 (229)
T cd03254 154 MLRDPKILILDEATSNIDTETEKLIQEA-LEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLA 226 (229)
T ss_pred HhcCCCEEEEeCccccCCHHHHHHHHHH-HHHhcCCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHHh
Confidence 9999999999999999999998877664 444556899999999999987899999999999999998887754
No 124
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=8.3e-37 Score=357.69 Aligned_cols=196 Identities=29% Similarity=0.366 Sum_probs=160.2
Q ss_pred cccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC-----------------eEEEEcCCCCCCC
Q 000720 611 TIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-----------------KKAYVPQSSWIQT 672 (1333)
Q Consensus 611 ~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g-----------------~iayv~Q~~~i~~ 672 (1333)
...++| ||+|++||+++|+||||||||||+++|+|+++|++|++ .++| +++||+|++++++
T Consensus 6 ~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I-~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~ 84 (363)
T TIGR01186 6 KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQI-FIDGENIMKQSPVELREVRRKKIGMVFQQFALFP 84 (363)
T ss_pred ceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEE-EECCEECCcCCHHHHHHHHhCcEEEEECCCcCCC
Confidence 457899 99999999999999999999999999999999999986 5544 5899999999876
Q ss_pred -CCHHHHhccCCcC---C-HHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCC
Q 000720 673 -GTIRENILFGKDM---R-QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDP 747 (1333)
Q Consensus 673 -~Tv~enI~~g~~~---~-~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDEP 747 (1333)
.||+|||.|+.++ . ++..+++.+.+... |.....++++.+|||||||||+|||||+++|+++|||||
T Consensus 85 ~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~v--------gL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP 156 (363)
T TIGR01186 85 HMTILQNTSLGPELLGWPEQERKEKALELLKLV--------GLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEA 156 (363)
T ss_pred CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc--------CCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 6999999987543 1 22233333322211 112234578889999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHh-CCCeEEEecCchhhh-hcCCEEEEEeCCeEEEccChHHHHhhcchHHH
Q 000720 748 FSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFL-DAADLVLVMKDGKIEQSGKYEDLIADQNSELV 815 (1333)
Q Consensus 748 ~saLD~~~~~~l~~~~~~~~~-~~~TvIlvtH~~~~l-~~aD~i~vl~~G~i~~~g~~~~l~~~~~~~~~ 815 (1333)
|||||+.+++++.+.+.+... .++|+|+||||++++ ..||+|++|++|++++.|+++++..++..++.
T Consensus 157 ~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~p~~~~~ 226 (363)
T TIGR01186 157 FSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNPANEYV 226 (363)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhCcccHHH
Confidence 999999999999887665443 389999999999986 45999999999999999999999874444443
No 125
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=1.8e-36 Score=353.13 Aligned_cols=204 Identities=25% Similarity=0.325 Sum_probs=166.3
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC----------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g---------- 659 (1333)
|+++|++++|+..+ ...+.|+| ||++++||+++|+||||||||||+++|+|+.+|++|++ .++|
T Consensus 2 I~~~~lsk~y~~~~----~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I-~i~G~~i~~~~~~~ 76 (343)
T TIGR02314 2 IKLSNITKVFHQGT----KTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSV-IVDGQDLTTLSNSE 76 (343)
T ss_pred EEEEEEEEEECCCC----cceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEE-EECCEECCcCCHHH
Confidence 78999999996430 12468999 99999999999999999999999999999999999986 5544
Q ss_pred ------eEEEEcCCCCCC-CCCHHHHhccCCcC---CHH----HHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHH
Q 000720 660 ------KKAYVPQSSWIQ-TGTIRENILFGKDM---RQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (1333)
Q Consensus 660 ------~iayv~Q~~~i~-~~Tv~enI~~g~~~---~~~----~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQ 725 (1333)
+++|+||++.++ +.|++||+.++... ++. +..+.++..++. ...+..+.+|||||
T Consensus 77 l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~-----------~~~~~~~~~LSgGq 145 (343)
T TIGR02314 77 LTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLG-----------DKHDSYPSNLSGGQ 145 (343)
T ss_pred HHHHhcCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-----------hhhhCChhhCCHHH
Confidence 489999998876 57999999886431 221 122333333332 12346788999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEecCchhhhhc-CCEEEEEeCCeEEEccCh
Q 000720 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS-QKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKY 803 (1333)
Q Consensus 726 kqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~-~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~~g~~ 803 (1333)
||||+|||||+.+|+++|||||||+||+.+...+.+.+.+...+ +.|+|++||+++.+.. ||+|++|++|+|++.|++
T Consensus 146 kQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~ 225 (343)
T TIGR02314 146 KQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTV 225 (343)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCH
Confidence 99999999999999999999999999999998887654433333 7999999999999865 999999999999999999
Q ss_pred HHHHhhc
Q 000720 804 EDLIADQ 810 (1333)
Q Consensus 804 ~~l~~~~ 810 (1333)
+++..++
T Consensus 226 ~~v~~~p 232 (343)
T TIGR02314 226 SEIFSHP 232 (343)
T ss_pred HHHHcCC
Confidence 9997643
No 126
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.1e-36 Score=335.87 Aligned_cols=210 Identities=31% Similarity=0.490 Sum_probs=180.4
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC----------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g---------- 659 (1333)
|+++|++++|+.. ..+.+++ ||++++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 1 i~~~~l~~~~~~~------~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i-~~~g~~~~~~~~~~ 73 (234)
T cd03251 1 VEFKNVTFRYPGD------GPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRI-LIDGHDVRDYTLAS 73 (234)
T ss_pred CEEEEEEEEeCCC------CccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEE-EECCEEhhhCCHHH
Confidence 4689999999643 2368999 99999999999999999999999999999999999986 6654
Q ss_pred ---eEEEEcCCCCCCCCCHHHHhccCCc-CCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHH
Q 000720 660 ---KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAV 735 (1333)
Q Consensus 660 ---~iayv~Q~~~i~~~Tv~enI~~g~~-~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl 735 (1333)
.++|++|++++++.|++||+.++.. .......+..+.+.+.+.++.++.|..+..+.++.+||||||||++||||+
T Consensus 74 ~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al 153 (234)
T cd03251 74 LRRQIGLVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARAL 153 (234)
T ss_pred HHhhEEEeCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHH
Confidence 3799999999888999999998753 233444555566667777777777777788889999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhcCCEEEEEeCCeEEEccChHHHHh
Q 000720 736 YSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIA 808 (1333)
Q Consensus 736 ~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~aD~i~vl~~G~i~~~g~~~~l~~ 808 (1333)
+.+|+++||||||++||+.+.+.+.+ +++...+++|+|++||+++.++.||++++|++|++++.|+++++..
T Consensus 154 ~~~p~lllLDEP~~~LD~~~~~~l~~-~l~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 225 (234)
T cd03251 154 LKDPPILILDEATSALDTESERLVQA-ALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLA 225 (234)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHH-HHHHhcCCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHH
Confidence 99999999999999999999887765 4555556899999999999987899999999999999999888765
No 127
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.4e-36 Score=335.32 Aligned_cols=209 Identities=33% Similarity=0.518 Sum_probs=180.0
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC----------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g---------- 659 (1333)
++++|++++|+.+ ...+++ |+++++||+++|+||||||||||+++|+|+.+|++|++ .++|
T Consensus 1 l~~~~l~~~~~~~-------~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v-~~~g~~~~~~~~~~ 72 (236)
T cd03253 1 IEFENVTFAYDPG-------RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSI-LIDGQDIREVTLDS 72 (236)
T ss_pred CEEEEEEEEeCCC-------CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEE-EECCEEhhhCCHHH
Confidence 4689999999632 358999 99999999999999999999999999999999999986 6655
Q ss_pred ---eEEEEcCCCCCCCCCHHHHhccCCcC-CHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHH
Q 000720 660 ---KKAYVPQSSWIQTGTIRENILFGKDM-RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAV 735 (1333)
Q Consensus 660 ---~iayv~Q~~~i~~~Tv~enI~~g~~~-~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl 735 (1333)
.++|++|++++++.|++||+.++... ......+.++.+.+.+.++.++.|..+.+++++.+||||||||++||||+
T Consensus 73 ~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL 152 (236)
T cd03253 73 LRRAIGVVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAI 152 (236)
T ss_pred HHhhEEEECCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHH
Confidence 37999999999899999999987532 23334455666677777788888888888889999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhcCCEEEEEeCCeEEEccChHHHHh
Q 000720 736 YSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIA 808 (1333)
Q Consensus 736 ~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~aD~i~vl~~G~i~~~g~~~~l~~ 808 (1333)
+++|+++||||||++||+++.+.+.+.+ ....+++|+|++||+.+.+..||++++|++|++++.|+.+++..
T Consensus 153 ~~~p~llllDEP~~~LD~~~~~~l~~~l-~~~~~~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~ 224 (236)
T cd03253 153 LKNPPILLLDEATSALDTHTEREIQAAL-RDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLA 224 (236)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHH-HHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhh
Confidence 9999999999999999999988777644 44444899999999999987899999999999999999888765
No 128
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=100.00 E-value=1.9e-35 Score=340.35 Aligned_cols=191 Identities=28% Similarity=0.416 Sum_probs=160.9
Q ss_pred ccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECCe-------
Q 000720 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK------- 660 (1333)
Q Consensus 589 ~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g~------- 660 (1333)
..+++++.+..|+. ...+++ ||++++||+.|++|+||+|||||+++|.|.++|++|++ .++|+
T Consensus 3 ~~l~~~~itK~f~~--------~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI-~v~G~~v~~~sP 73 (501)
T COG3845 3 PALEMRGITKRFPG--------VVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEI-RVDGKEVRIKSP 73 (501)
T ss_pred ceEEEeccEEEcCC--------EEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceE-EECCEEeccCCH
Confidence 46899999999973 345677 99999999999999999999999999999999999997 88875
Q ss_pred -------EEEEcCCCCC-CCCCHHHHhccCCcCC------H----HHHHHHHHHcccchHHHhhcCCCccccCCCCCCCC
Q 000720 661 -------KAYVPQSSWI-QTGTIRENILFGKDMR------Q----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLS 722 (1333)
Q Consensus 661 -------iayv~Q~~~i-~~~Tv~enI~~g~~~~------~----~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LS 722 (1333)
||+|.|++-+ .+.||.|||..|.+-. . ++.++..+..++.-| ..++..+||
T Consensus 74 ~dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vd-----------p~~~V~dLs 142 (501)
T COG3845 74 RDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVD-----------PDAKVADLS 142 (501)
T ss_pred HHHHHcCCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCC-----------ccceeecCC
Confidence 6999999865 6779999999997532 1 222333333343322 235778999
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeCCeEEE
Q 000720 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQ 799 (1333)
Q Consensus 723 GGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~ 799 (1333)
=||||||.|-+|||++|+++||||||+-|-|...+++|+.+.+....|+|||+|||.++++.. ||++-||++|+++.
T Consensus 143 VG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvg 220 (501)
T COG3845 143 VGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVG 220 (501)
T ss_pred cchhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEe
Confidence 999999999999999999999999999999999999998766666679999999999998765 99999999999764
No 129
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=5.6e-36 Score=331.76 Aligned_cols=205 Identities=29% Similarity=0.398 Sum_probs=179.3
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC---------
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g--------- 659 (1333)
.++++|++++|+.. ..+.+++ ||++++||+++|+||||||||||+++|+|+.+|.+|++ .++|
T Consensus 2 ~l~~~~l~~~~~~~------~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~g~~~~~~~~~ 74 (221)
T cd03244 2 DIEFKNVSLRYRPN------LPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSI-LIDGVDISKIGLH 74 (221)
T ss_pred cEEEEEEEEecCCC------CcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEE-EECCEEhHhCCHH
Confidence 47899999999743 2468999 99999999999999999999999999999999999986 5554
Q ss_pred ----eEEEEcCCCCCCCCCHHHHhccCCcCCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHH
Q 000720 660 ----KKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAV 735 (1333)
Q Consensus 660 ----~iayv~Q~~~i~~~Tv~enI~~g~~~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl 735 (1333)
.++|++|++.+++.|++||+.+......++..+.++..++.+.+..++.|..+..++++.+||||||||++||||+
T Consensus 75 ~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral 154 (221)
T cd03244 75 DLRSRISIIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARAL 154 (221)
T ss_pred HHhhhEEEECCCCccccchHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHH
Confidence 4799999999888999999987655555555666777777777777888999989999999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhcCCEEEEEeCCeEEEccC
Q 000720 736 YSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGK 802 (1333)
Q Consensus 736 ~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~aD~i~vl~~G~i~~~g~ 802 (1333)
+.+|+++||||||++||+.+++.+.+ +++...+++|+|++||+++.++.||++++|++|++++.|+
T Consensus 155 ~~~p~llllDEP~~~LD~~~~~~l~~-~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 155 LRKSKILVLDEATASVDPETDALIQK-TIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220 (221)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHH-HHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCeEEecCC
Confidence 99999999999999999999887765 4455556789999999999988899999999999998775
No 130
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=4e-36 Score=319.24 Aligned_cols=205 Identities=25% Similarity=0.383 Sum_probs=168.8
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC---------
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g--------- 659 (1333)
.++++|.++.|+... ...+.+++ +|++.+||.++|+|++|||||||.++|+|+.+|++|++ .++|
T Consensus 3 ~l~v~nl~~~y~~~~----~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I-~~~G~~~~~~~~~ 77 (252)
T COG1124 3 LLSVRNLSIVYGGGK----FAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSI-LLDGKPLAPKKRA 77 (252)
T ss_pred eEEEeceEEEecCCc----chhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceE-EECCcccCccccc
Confidence 588999999998651 11258999 99999999999999999999999999999999999997 7766
Q ss_pred -----eEEEEcCCCC--C-CCCCHHHHhccCCcC-----CHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHH
Q 000720 660 -----KKAYVPQSSW--I-QTGTIRENILFGKDM-----RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQK 726 (1333)
Q Consensus 660 -----~iayv~Q~~~--i-~~~Tv~enI~~g~~~-----~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQk 726 (1333)
.+-+|+|+|. + +..||++-|.=+... .+++..++++..++.+. ...+++.+||||||
T Consensus 78 ~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~----------~l~R~P~eLSGGQ~ 147 (252)
T COG1124 78 KAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPS----------FLDRRPHELSGGQR 147 (252)
T ss_pred hhhccceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHH----------HHhcCchhcChhHH
Confidence 3679999985 2 456998888643221 12334555666666543 23467889999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEecCchhhhhc-CCEEEEEeCCeEEEccChH
Q 000720 727 QRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYE 804 (1333)
Q Consensus 727 qRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~-~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~~g~~~ 804 (1333)
|||||||||..+|+++|+|||||+||+.++.++.+.+.+... ++-|.|+||||+..+.+ ||||+||++|+|++.++.+
T Consensus 148 QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~ 227 (252)
T COG1124 148 QRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTE 227 (252)
T ss_pred HHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechh
Confidence 999999999999999999999999999999999875544322 46799999999999987 9999999999999999999
Q ss_pred HHHhh
Q 000720 805 DLIAD 809 (1333)
Q Consensus 805 ~l~~~ 809 (1333)
++...
T Consensus 228 ~l~~~ 232 (252)
T COG1124 228 ELLSH 232 (252)
T ss_pred hhhcC
Confidence 98764
No 131
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.7e-36 Score=350.19 Aligned_cols=205 Identities=27% Similarity=0.351 Sum_probs=168.0
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC---------
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g--------- 659 (1333)
.++++|++++|.. ...+++ ||++++||+++|+|||||||||||++|+|+.+|++|++ .++|
T Consensus 6 ~l~~~~l~~~~~~--------~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I-~~~g~~i~~~~~~ 76 (351)
T PRK11432 6 FVVLKNITKRFGS--------NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQI-FIDGEDVTHRSIQ 76 (351)
T ss_pred EEEEEeEEEEECC--------eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEE-EECCEECCCCCHH
Confidence 6899999999963 357999 99999999999999999999999999999999999986 6665
Q ss_pred --eEEEEcCCCCCC-CCCHHHHhccCCcC---CH-H---HHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHH
Q 000720 660 --KKAYVPQSSWIQ-TGTIRENILFGKDM---RQ-S---FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRI 729 (1333)
Q Consensus 660 --~iayv~Q~~~i~-~~Tv~enI~~g~~~---~~-~---~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv 729 (1333)
++|||+|++.++ ..||+|||.|+... .+ + +.++.++..++. ...++++.+|||||||||
T Consensus 77 ~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~-----------~~~~r~~~~LSgGq~QRV 145 (351)
T PRK11432 77 QRDICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLA-----------GFEDRYVDQISGGQQQRV 145 (351)
T ss_pred HCCEEEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCc-----------hhhcCChhhCCHHHHHHH
Confidence 479999999876 56999999997532 11 1 222233333322 123467889999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEecCchhhhh-cCCEEEEEeCCeEEEccChHHHH
Q 000720 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS-QKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKYEDLI 807 (1333)
Q Consensus 730 ~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~-~~TvIlvtH~~~~l~-~aD~i~vl~~G~i~~~g~~~~l~ 807 (1333)
+|||||+.+|+++|||||||+||+..++++.+.+.+...+ ++|+|+||||.+++. .||+|++|++|+|++.|+++++.
T Consensus 146 aLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~ 225 (351)
T PRK11432 146 ALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELY 225 (351)
T ss_pred HHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999999999999988887654433333 799999999999874 59999999999999999999998
Q ss_pred hhcchHH
Q 000720 808 ADQNSEL 814 (1333)
Q Consensus 808 ~~~~~~~ 814 (1333)
..+...+
T Consensus 226 ~~p~~~~ 232 (351)
T PRK11432 226 RQPASRF 232 (351)
T ss_pred hCCCchH
Confidence 7544333
No 132
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=6.5e-36 Score=350.92 Aligned_cols=205 Identities=29% Similarity=0.356 Sum_probs=169.1
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC---------
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g--------- 659 (1333)
.++++|++++|+. ...+++ ||++++||+++|+|||||||||||++|+|+.+|++|++ .++|
T Consensus 4 ~l~~~~l~~~~~~--------~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I-~i~g~~~~~~~~~ 74 (353)
T TIGR03265 4 YLSIDNIRKRFGA--------FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTI-YQGGRDITRLPPQ 74 (353)
T ss_pred EEEEEEEEEEeCC--------eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEE-EECCEECCCCCHH
Confidence 5899999999963 357899 99999999999999999999999999999999999986 6665
Q ss_pred --eEEEEcCCCCCC-CCCHHHHhccCCcC---CH----HHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHH
Q 000720 660 --KKAYVPQSSWIQ-TGTIRENILFGKDM---RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRI 729 (1333)
Q Consensus 660 --~iayv~Q~~~i~-~~Tv~enI~~g~~~---~~----~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv 729 (1333)
.+|||+|++.++ ..||+||+.|+... ++ .+.+++++..++. ...++++.+|||||||||
T Consensus 75 ~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~-----------~~~~~~~~~LSgGq~QRv 143 (353)
T TIGR03265 75 KRDYGIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLP-----------GSERKYPGQLSGGQQQRV 143 (353)
T ss_pred HCCEEEEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCC-----------chhhCChhhCCHHHHHHH
Confidence 479999999876 57999999987432 11 1223333333332 233467889999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEecCchhhhh-cCCEEEEEeCCeEEEccChHHHH
Q 000720 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS-QKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKYEDLI 807 (1333)
Q Consensus 730 ~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~-~~TvIlvtH~~~~l~-~aD~i~vl~~G~i~~~g~~~~l~ 807 (1333)
+|||||+.+|+++|||||||+||+..++++.+.+.+...+ +.|+|+||||.+++. .||+|++|++|++++.|+++++.
T Consensus 144 aLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~ 223 (353)
T TIGR03265 144 ALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIY 223 (353)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999999999999988887655443333 789999999999875 59999999999999999999998
Q ss_pred hhcchHH
Q 000720 808 ADQNSEL 814 (1333)
Q Consensus 808 ~~~~~~~ 814 (1333)
+++...+
T Consensus 224 ~~p~~~~ 230 (353)
T TIGR03265 224 RHPATPF 230 (353)
T ss_pred hCCCCHH
Confidence 7544444
No 133
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.6e-36 Score=333.81 Aligned_cols=198 Identities=28% Similarity=0.366 Sum_probs=160.5
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC----------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g---------- 659 (1333)
++++|++++|+. .+.+++ ||++++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 1 l~~~~l~~~~~~--------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i-~~~g~~~~~~~~~~ 71 (235)
T cd03261 1 IELRGLTKSFGG--------RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEV-LIDGEDISGLSEAE 71 (235)
T ss_pred CeEEEEEEEECC--------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE-EECCEEccccChhh
Confidence 468899999953 358999 99999999999999999999999999999999999986 5543
Q ss_pred ------eEEEEcCCCCCCC-CCHHHHhccCCc----CCHH----HHHHHHHHcccchHHHhhcCCCccccCCCCCCCChH
Q 000720 660 ------KKAYVPQSSWIQT-GTIRENILFGKD----MRQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGG 724 (1333)
Q Consensus 660 ------~iayv~Q~~~i~~-~Tv~enI~~g~~----~~~~----~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGG 724 (1333)
.++|++|++.++. .|++||+.++.. .... +..+.++.+++. ...+.++.+||||
T Consensus 72 ~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSgG 140 (235)
T cd03261 72 LYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLR-----------GAEDLYPAELSGG 140 (235)
T ss_pred HHHHhcceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCc-----------hhhcCChhhCCHH
Confidence 3799999987765 599999987632 1211 122233333332 1234667899999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEecCchhhhhc-CCEEEEEeCCeEEEccC
Q 000720 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGK 802 (1333)
Q Consensus 725 QkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~-~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~~g~ 802 (1333)
||||++||||++++|+++||||||++||+.+.+.+.+.+.+... .++|||++||+++++.. ||+|++|++|++++.|+
T Consensus 141 ~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~ 220 (235)
T cd03261 141 MKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGT 220 (235)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecC
Confidence 99999999999999999999999999999998888765443333 37999999999998765 99999999999999999
Q ss_pred hHHHHh
Q 000720 803 YEDLIA 808 (1333)
Q Consensus 803 ~~~l~~ 808 (1333)
++++..
T Consensus 221 ~~~~~~ 226 (235)
T cd03261 221 PEELRA 226 (235)
T ss_pred HHHHcC
Confidence 888764
No 134
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=1.6e-35 Score=327.86 Aligned_cols=204 Identities=33% Similarity=0.523 Sum_probs=175.2
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC---------
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g--------- 659 (1333)
.++++|.++.|+.. ..+.+++ ||++++|++++|+||||||||||+++|+|+.+|++|++ .++|
T Consensus 2 ~l~~~~l~~~~~~~------~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i-~~~g~~~~~~~~~ 74 (220)
T cd03245 2 RIEFRNVSFSYPNQ------EIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSV-LLDGTDIRQLDPA 74 (220)
T ss_pred eEEEEEEEEEcCCC------CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeE-EECCEEhHHCCHH
Confidence 47899999999642 2468999 99999999999999999999999999999999999986 6655
Q ss_pred ----eEEEEcCCCCCCCCCHHHHhccCCcC-CHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHH
Q 000720 660 ----KKAYVPQSSWIQTGTIRENILFGKDM-RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARA 734 (1333)
Q Consensus 660 ----~iayv~Q~~~i~~~Tv~enI~~g~~~-~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARA 734 (1333)
.++|++|+++++..|++||+.++... .+....+.++.+++.+.++..|.|..|.+.+...+||||||||++||||
T Consensus 75 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~a 154 (220)
T cd03245 75 DLRRNIGYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARA 154 (220)
T ss_pred HHHhhEEEeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHH
Confidence 37999999988778999999886432 3345566777777877777788888888888899999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhcCCEEEEEeCCeEEEcc
Q 000720 735 VYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSG 801 (1333)
Q Consensus 735 l~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~aD~i~vl~~G~i~~~g 801 (1333)
++.+|+++||||||++||+.+.+.+.+. ++...+++|+|++||+++.++.||++++|++|++++.|
T Consensus 155 l~~~p~llllDEPt~~LD~~~~~~l~~~-l~~~~~~~tii~~sH~~~~~~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 155 LLNDPPILLLDEPTSAMDMNSEERLKER-LRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220 (220)
T ss_pred HhcCCCEEEEeCccccCCHHHHHHHHHH-HHHhcCCCEEEEEeCCHHHHHhCCEEEEEeCCeEeecC
Confidence 9999999999999999999998877764 44444458999999999988779999999999998654
No 135
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-35 Score=344.57 Aligned_cols=207 Identities=27% Similarity=0.423 Sum_probs=167.1
Q ss_pred CccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC-------
Q 000720 588 DVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG------- 659 (1333)
Q Consensus 588 ~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g------- 659 (1333)
+..|+++|++|+|+.... ...+.|+| ||+|++||+++|+|+||||||||+++|+|+++|++|++ .++|
T Consensus 19 ~~~l~~~nl~~~y~~~~~---~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I-~i~g~~~~~~~ 94 (320)
T PRK13631 19 DIILRVKNLYCVFDEKQE---NELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTI-QVGDIYIGDKK 94 (320)
T ss_pred CceEEEEeEEEEeCCCCc---ccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeE-EECCEEccccc
Confidence 356999999999974300 12368999 99999999999999999999999999999999999986 5432
Q ss_pred ----------------------eEEEEcCCC--CCCCCCHHHHhccCCc---CCHH----HHHHHHHHcccchHHHhhcC
Q 000720 660 ----------------------KKAYVPQSS--WIQTGTIRENILFGKD---MRQS----FYEEVLEGCALNQDIEMWAD 708 (1333)
Q Consensus 660 ----------------------~iayv~Q~~--~i~~~Tv~enI~~g~~---~~~~----~~~~v~~~~~l~~d~~~~~~ 708 (1333)
+++||+|+| .+++.|++|||.|+.. .+.+ +.++.++.+++.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~-------- 166 (320)
T PRK13631 95 NNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLD-------- 166 (320)
T ss_pred ccccccccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCC--------
Confidence 379999998 6788899999998742 1211 112222222221
Q ss_pred CCccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhh-hcCC
Q 000720 709 GDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFL-DAAD 787 (1333)
Q Consensus 709 g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l-~~aD 787 (1333)
....++++.+||||||||++|||||+++|+++||||||++||+.+.+.+.+.+.+...+++|||++||+++++ ..||
T Consensus 167 --~~~~~~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~ad 244 (320)
T PRK13631 167 --DSYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVAD 244 (320)
T ss_pred --hhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCC
Confidence 1234578899999999999999999999999999999999999998888765443334689999999999987 4699
Q ss_pred EEEEEeCCeEEEccChHHHHh
Q 000720 788 LVLVMKDGKIEQSGKYEDLIA 808 (1333)
Q Consensus 788 ~i~vl~~G~i~~~g~~~~l~~ 808 (1333)
+|++|++|++++.|+++++..
T Consensus 245 ri~vl~~G~i~~~g~~~~~~~ 265 (320)
T PRK13631 245 EVIVMDKGKILKTGTPYEIFT 265 (320)
T ss_pred EEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999998875
No 136
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.1e-34 Score=342.19 Aligned_cols=197 Identities=23% Similarity=0.316 Sum_probs=160.8
Q ss_pred ccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECCe-------
Q 000720 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK------- 660 (1333)
Q Consensus 589 ~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g~------- 660 (1333)
..++++|.+.+|+. ...|++ ||++.+||+++++|.||||||||+|.|.|.++|++|++ .++|+
T Consensus 7 ~ll~~~~i~K~Fgg--------V~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I-~~~G~~~~~~sp 77 (500)
T COG1129 7 PLLELRGISKSFGG--------VKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEI-LIDGKPVAFSSP 77 (500)
T ss_pred ceeeeecceEEcCC--------ceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceE-EECCEEccCCCH
Confidence 35889999999974 478999 99999999999999999999999999999999999986 88874
Q ss_pred -------EEEEcCCCCC-CCCCHHHHhccCCcCCH-------HHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHH
Q 000720 661 -------KAYVPQSSWI-QTGTIRENILFGKDMRQ-------SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (1333)
Q Consensus 661 -------iayv~Q~~~i-~~~Tv~enI~~g~~~~~-------~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQ 725 (1333)
|+.|.|+..+ ++.||.|||.+|++... ...++..+ .+ ++.+ |.......+..+||+||
T Consensus 78 ~~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~--~~---l~~l--g~~~~~~~~v~~Lsiaq 150 (500)
T COG1129 78 RDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRAR--EL---LARL--GLDIDPDTLVGDLSIAQ 150 (500)
T ss_pred HHHHhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHH--HH---HHHc--CCCCChhhhhhhCCHHH
Confidence 6899999864 78899999999876432 11111111 11 1111 11011346778999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhh-cCCEEEEEeCCeEEEcc
Q 000720 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSG 801 (1333)
Q Consensus 726 kqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~-~aD~i~vl~~G~i~~~g 801 (1333)
||-|+||||++.++++++||||||+|+.+..+++|+.+.+...+|.++|+|||+++++. .||+|.||+||+.+..+
T Consensus 151 rQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~ 227 (500)
T COG1129 151 RQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTR 227 (500)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeec
Confidence 99999999999999999999999999999999999865555567999999999999875 59999999999988653
No 137
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-35 Score=340.79 Aligned_cols=203 Identities=26% Similarity=0.405 Sum_probs=165.5
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC----------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g---------- 659 (1333)
|+++|++|+|+.... ...+.++| ||+|++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 2 i~~~~v~~~y~~~~~---~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i-~~~g~~i~~~~~~~ 77 (288)
T PRK13643 2 IKFEKVNYTYQPNSP---FASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKV-TVGDIVVSSTSKQK 77 (288)
T ss_pred EEEEEEEEEeCCCCc---ccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEE-EECCEECccccccc
Confidence 789999999974300 01358999 99999999999999999999999999999999999986 5554
Q ss_pred -------eEEEEcCCC--CCCCCCHHHHhccCCcC---CH----HHHHHHHHHcccchHHHhhcCCCccccCCCCCCCCh
Q 000720 660 -------KKAYVPQSS--WIQTGTIRENILFGKDM---RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSG 723 (1333)
Q Consensus 660 -------~iayv~Q~~--~i~~~Tv~enI~~g~~~---~~----~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSG 723 (1333)
.++|++|+| .++..|+.||+.|+... .. .++.+.++..++..+ ..++.+.+|||
T Consensus 78 ~~~~~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~----------~~~~~~~~LSg 147 (288)
T PRK13643 78 EIKPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADE----------FWEKSPFELSG 147 (288)
T ss_pred cHHHHHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChh----------hccCCcccCCH
Confidence 369999998 67788999999987431 11 223334444443211 22467789999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCeEEEecCchhhhh-cCCEEEEEeCCeEEEcc
Q 000720 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-LSQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSG 801 (1333)
Q Consensus 724 GQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~-~~~~TvIlvtH~~~~l~-~aD~i~vl~~G~i~~~g 801 (1333)
|||||++||||++.+|+++||||||++||+.+++.+.+. ++.+ .+++|||++|||++++. .||+|++|++|++++.|
T Consensus 148 GqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~-l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g 226 (288)
T PRK13643 148 GQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQL-FESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCG 226 (288)
T ss_pred HHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHH-HHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEC
Confidence 999999999999999999999999999999998887764 4443 35899999999999885 59999999999999999
Q ss_pred ChHHHHh
Q 000720 802 KYEDLIA 808 (1333)
Q Consensus 802 ~~~~l~~ 808 (1333)
+++++..
T Consensus 227 ~~~~~~~ 233 (288)
T PRK13643 227 TPSDVFQ 233 (288)
T ss_pred CHHHHHc
Confidence 9999865
No 138
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=1.4e-35 Score=348.60 Aligned_cols=203 Identities=27% Similarity=0.364 Sum_probs=167.7
Q ss_pred ccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCC--CcEEEECC------
Q 000720 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRIS--GAAIKVHG------ 659 (1333)
Q Consensus 589 ~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~--G~~i~~~g------ 659 (1333)
..++++|++++|.. ...+++ ||++++||+++|+|||||||||||++|+|+.+|++ |++ .++|
T Consensus 4 ~~l~~~~l~~~~~~--------~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i-~~~g~~~~~~ 74 (362)
T TIGR03258 4 GGIRIDHLRVAYGA--------NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRI-AIADRDLTHA 74 (362)
T ss_pred eEEEEEEEEEEECC--------eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEE-EECCEECCCC
Confidence 35899999999963 257999 99999999999999999999999999999999999 986 6654
Q ss_pred -----eEEEEcCCCCCC-CCCHHHHhccCCcC---CH----HHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHH
Q 000720 660 -----KKAYVPQSSWIQ-TGTIRENILFGKDM---RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQK 726 (1333)
Q Consensus 660 -----~iayv~Q~~~i~-~~Tv~enI~~g~~~---~~----~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQk 726 (1333)
.++||+|++.++ ..||+|||.|+... .+ .+.+++++..++. ...++++.+||||||
T Consensus 75 ~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~-----------~~~~~~~~~LSgGq~ 143 (362)
T TIGR03258 75 PPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLG-----------DAAAHLPAQLSGGMQ 143 (362)
T ss_pred CHHHCCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCC-----------chhhCChhhCCHHHH
Confidence 479999999876 56999999987432 11 1233333433332 223467889999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC--CCeEEEecCchhhhh-cCCEEEEEeCCeEEEccCh
Q 000720 727 QRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKY 803 (1333)
Q Consensus 727 qRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~--~~TvIlvtH~~~~l~-~aD~i~vl~~G~i~~~g~~ 803 (1333)
|||+|||||+.+|+++|||||||+||+..++++.+.+.+...+ |.|+|+||||++++. .||+|++|++|++++.|++
T Consensus 144 QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~ 223 (362)
T TIGR03258 144 QRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEP 223 (362)
T ss_pred HHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCH
Confidence 9999999999999999999999999999988887755443333 789999999999875 4999999999999999999
Q ss_pred HHHHhhcc
Q 000720 804 EDLIADQN 811 (1333)
Q Consensus 804 ~~l~~~~~ 811 (1333)
+++..++.
T Consensus 224 ~~~~~~p~ 231 (362)
T TIGR03258 224 QALYDAPA 231 (362)
T ss_pred HHHHhCcC
Confidence 99987543
No 139
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.3e-35 Score=330.72 Aligned_cols=198 Identities=31% Similarity=0.402 Sum_probs=161.4
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC----------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g---------- 659 (1333)
++++|++++|+. .+++++ |+++++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 3 l~~~~l~~~~~~--------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i-~~~g~~~~~~~~~~ 73 (239)
T cd03296 3 IEVRNVSKRFGD--------FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTI-LFGGEDATDVPVQE 73 (239)
T ss_pred EEEEeEEEEECC--------EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE-EECCEECCcCCccc
Confidence 789999999963 358999 99999999999999999999999999999999999986 5554
Q ss_pred -eEEEEcCCCCCC-CCCHHHHhccCCcC-------CHH----HHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHH
Q 000720 660 -KKAYVPQSSWIQ-TGTIRENILFGKDM-------RQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQK 726 (1333)
Q Consensus 660 -~iayv~Q~~~i~-~~Tv~enI~~g~~~-------~~~----~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQk 726 (1333)
.++|++|+|.++ ..|++||+.++... +.. +.++.++..++. ...+.++.+||||||
T Consensus 74 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G~~ 142 (239)
T cd03296 74 RNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLD-----------WLADRYPAQLSGGQR 142 (239)
T ss_pred cceEEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCCh-----------hhhhcChhhCCHHHH
Confidence 479999999776 46999999886432 111 112223333221 223466789999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEecCchhhhhc-CCEEEEEeCCeEEEccChH
Q 000720 727 QRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS-QKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYE 804 (1333)
Q Consensus 727 qRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~-~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~~g~~~ 804 (1333)
||++||||++.+|+++||||||++||+++.+.+.+.+.+...+ ++|+|++||+++.+.. ||++++|++|++++.|+++
T Consensus 143 qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 222 (239)
T cd03296 143 QRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPD 222 (239)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHH
Confidence 9999999999999999999999999999988777644333333 7899999999998754 9999999999999999998
Q ss_pred HHHh
Q 000720 805 DLIA 808 (1333)
Q Consensus 805 ~l~~ 808 (1333)
++.+
T Consensus 223 ~~~~ 226 (239)
T cd03296 223 EVYD 226 (239)
T ss_pred HHhc
Confidence 8765
No 140
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=2.1e-35 Score=348.13 Aligned_cols=203 Identities=27% Similarity=0.357 Sum_probs=167.2
Q ss_pred ccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC--------
Q 000720 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------- 659 (1333)
Q Consensus 589 ~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g-------- 659 (1333)
..++++|++++|.. ...+++ ||++++||+++|+|||||||||||++|+|+.+|++|++ .++|
T Consensus 13 ~~L~l~~l~~~~~~--------~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I-~~~g~~i~~~~~ 83 (375)
T PRK09452 13 PLVELRGISKSFDG--------KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRI-MLDGQDITHVPA 83 (375)
T ss_pred ceEEEEEEEEEECC--------eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEE-EECCEECCCCCH
Confidence 35899999999963 257899 99999999999999999999999999999999999986 6665
Q ss_pred ---eEEEEcCCCCCC-CCCHHHHhccCCcC---CH----HHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHH
Q 000720 660 ---KKAYVPQSSWIQ-TGTIRENILFGKDM---RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQR 728 (1333)
Q Consensus 660 ---~iayv~Q~~~i~-~~Tv~enI~~g~~~---~~----~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqR 728 (1333)
.++|++|++.++ ..||+|||.|+... .+ ++.+++++..++. ....+++.+||||||||
T Consensus 84 ~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~p~~LSgGq~QR 152 (375)
T PRK09452 84 ENRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLE-----------EFAQRKPHQLSGGQQQR 152 (375)
T ss_pred HHCCEEEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCc-----------hhhhCChhhCCHHHHHH
Confidence 379999998776 56999999987532 11 1223333333332 22346778999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEecCchhhhh-cCCEEEEEeCCeEEEccChHHH
Q 000720 729 IQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKYEDL 806 (1333)
Q Consensus 729 v~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~-~~~TvIlvtH~~~~l~-~aD~i~vl~~G~i~~~g~~~~l 806 (1333)
|+|||||+.+|+++|||||||+||++.++.+.+.+.+... .+.|+|+||||.+++. .||+|++|++|+|++.|+++++
T Consensus 153 VaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i 232 (375)
T PRK09452 153 VAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREI 232 (375)
T ss_pred HHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 9999999999999999999999999998887765444333 3799999999999864 5999999999999999999999
Q ss_pred Hhhcc
Q 000720 807 IADQN 811 (1333)
Q Consensus 807 ~~~~~ 811 (1333)
..++.
T Consensus 233 ~~~p~ 237 (375)
T PRK09452 233 YEEPK 237 (375)
T ss_pred HhCcc
Confidence 87544
No 141
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-35 Score=340.18 Aligned_cols=206 Identities=25% Similarity=0.356 Sum_probs=165.7
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC---------
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g--------- 659 (1333)
.++++|++++|+.... ...+.+++ ||++++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 2 ~l~~~~l~~~y~~~~~---~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i-~~~g~~~~~~~~~ 77 (287)
T PRK13637 2 SIKIENLTHIYMEGTP---FEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKI-IIDGVDITDKKVK 77 (287)
T ss_pred EEEEEEEEEECCCCCc---cccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEE-EECCEECCCcCcc
Confidence 3789999999974300 11468999 99999999999999999999999999999999999986 5543
Q ss_pred ------eEEEEcCCC--CCCCCCHHHHhccCCc---CCHH----HHHHHHHHcccchHHHhhcCCCccccCCCCCCCChH
Q 000720 660 ------KKAYVPQSS--WIQTGTIRENILFGKD---MRQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGG 724 (1333)
Q Consensus 660 ------~iayv~Q~~--~i~~~Tv~enI~~g~~---~~~~----~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGG 724 (1333)
++||+||+| .+++.|++||+.|+.. .+.. +.+++++.+++. +.+..++++.+||||
T Consensus 78 ~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~---------~~~~~~~~~~~LSgG 148 (287)
T PRK13637 78 LSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLD---------YEDYKDKSPFELSGG 148 (287)
T ss_pred HHHHhhceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCC---------chhhccCCcccCCHH
Confidence 479999998 4678899999998642 2221 223334444432 012345678899999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEecCchhhhh-cCCEEEEEeCCeEEEccC
Q 000720 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS-QKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGK 802 (1333)
Q Consensus 725 QkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~-~~TvIlvtH~~~~l~-~aD~i~vl~~G~i~~~g~ 802 (1333)
||||++|||||+.+|+++||||||++||+.++.++.+.+.+...+ ++|||++|||++++. .||+|++|++|++++.|+
T Consensus 149 q~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~ 228 (287)
T PRK13637 149 QKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGT 228 (287)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECC
Confidence 999999999999999999999999999999988887644333333 799999999999875 599999999999999999
Q ss_pred hHHHHh
Q 000720 803 YEDLIA 808 (1333)
Q Consensus 803 ~~~l~~ 808 (1333)
++++.+
T Consensus 229 ~~~~~~ 234 (287)
T PRK13637 229 PREVFK 234 (287)
T ss_pred HHHHHh
Confidence 998865
No 142
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-35 Score=340.54 Aligned_cols=204 Identities=25% Similarity=0.364 Sum_probs=165.8
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC----------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g---------- 659 (1333)
++++|++++|+.... ...++|+| ||+|++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 3 l~~~~l~~~y~~~~~---~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i-~~~g~~i~~~~~~~ 78 (290)
T PRK13634 3 ITFQKVEHRYQYKTP---FERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTV-TIGERVITAGKKNK 78 (290)
T ss_pred EEEEEEEEEECCCCc---ccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEE-EECCEECccccccc
Confidence 789999999964300 11468999 99999999999999999999999999999999999986 5554
Q ss_pred -------eEEEEcCCC--CCCCCCHHHHhccCCc---CCH----HHHHHHHHHcccchHHHhhcCCCccccCCCCCCCCh
Q 000720 660 -------KKAYVPQSS--WIQTGTIRENILFGKD---MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSG 723 (1333)
Q Consensus 660 -------~iayv~Q~~--~i~~~Tv~enI~~g~~---~~~----~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSG 723 (1333)
+++||+|+| .+++.||+|||.|+.. .+. ++.+++++.+++..++ .+.++.+|||
T Consensus 79 ~~~~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~----------~~~~~~~LSg 148 (290)
T PRK13634 79 KLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEEL----------LARSPFELSG 148 (290)
T ss_pred hHHHHHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhh----------hhCCcccCCH
Confidence 379999997 5777899999998642 121 2334444555443221 2356789999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEecCchhhhh-cCCEEEEEeCCeEEEcc
Q 000720 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS-QKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSG 801 (1333)
Q Consensus 724 GQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~-~~TvIlvtH~~~~l~-~aD~i~vl~~G~i~~~g 801 (1333)
|||||++|||||+.+|+++||||||++||+.+...+.+.+.....+ |.|||++|||++.+. .||+|++|++|++++.|
T Consensus 149 Gq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g 228 (290)
T PRK13634 149 GQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQG 228 (290)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEC
Confidence 9999999999999999999999999999999988887654333333 799999999999975 59999999999999999
Q ss_pred ChHHHHh
Q 000720 802 KYEDLIA 808 (1333)
Q Consensus 802 ~~~~l~~ 808 (1333)
+++++.+
T Consensus 229 ~~~~~~~ 235 (290)
T PRK13634 229 TPREIFA 235 (290)
T ss_pred CHHHHhc
Confidence 9998865
No 143
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=2.6e-35 Score=345.92 Aligned_cols=203 Identities=33% Similarity=0.434 Sum_probs=166.3
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC---------
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g--------- 659 (1333)
.++++|++++|+. ...+++ ||++++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 2 ~L~i~~l~~~~~~--------~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I-~i~g~~i~~~~~~ 72 (353)
T PRK10851 2 SIEIANIKKSFGR--------TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHI-RFHGTDVSRLHAR 72 (353)
T ss_pred EEEEEEEEEEeCC--------eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEE-EECCEECCCCCHH
Confidence 3789999999963 357999 99999999999999999999999999999999999986 6654
Q ss_pred --eEEEEcCCCCCCC-CCHHHHhccCCcC-------CH----HHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHH
Q 000720 660 --KKAYVPQSSWIQT-GTIRENILFGKDM-------RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (1333)
Q Consensus 660 --~iayv~Q~~~i~~-~Tv~enI~~g~~~-------~~----~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQ 725 (1333)
+++|++|++.++. .|++||+.|+... +. ++.++.++..++. ...++++.+|||||
T Consensus 73 ~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~-----------~~~~~~~~~LSgGq 141 (353)
T PRK10851 73 DRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLA-----------HLADRYPAQLSGGQ 141 (353)
T ss_pred HCCEEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCc-----------hhhhCChhhCCHHH
Confidence 4899999998765 6999999987532 11 1222233333332 22346788999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEecCchhhhhc-CCEEEEEeCCeEEEccCh
Q 000720 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS-QKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKY 803 (1333)
Q Consensus 726 kqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~-~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~~g~~ 803 (1333)
||||+|||||+.+|+++||||||++||+..++++.+.+.+...+ +.|+|+||||++++.. ||+|++|++|++++.|++
T Consensus 142 ~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~ 221 (353)
T PRK10851 142 KQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTP 221 (353)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCH
Confidence 99999999999999999999999999999988887654443333 7899999999998754 999999999999999999
Q ss_pred HHHHhhcch
Q 000720 804 EDLIADQNS 812 (1333)
Q Consensus 804 ~~l~~~~~~ 812 (1333)
+++..++..
T Consensus 222 ~~i~~~p~~ 230 (353)
T PRK10851 222 DQVWREPAT 230 (353)
T ss_pred HHHHhCccc
Confidence 999874433
No 144
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-35 Score=348.88 Aligned_cols=202 Identities=26% Similarity=0.356 Sum_probs=166.3
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC---------
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g--------- 659 (1333)
.++++|++++|+. ...+++ ||++++||+++|+|||||||||||++|+|+++|++|++ .++|
T Consensus 3 ~l~i~~l~~~~~~--------~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I-~~~g~~i~~~~~~ 73 (369)
T PRK11000 3 SVTLRNVTKAYGD--------VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDL-FIGEKRMNDVPPA 73 (369)
T ss_pred EEEEEEEEEEeCC--------eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEE-EECCEECCCCCHh
Confidence 4889999999963 257999 99999999999999999999999999999999999986 6654
Q ss_pred --eEEEEcCCCCCC-CCCHHHHhccCCcC---CH----HHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHH
Q 000720 660 --KKAYVPQSSWIQ-TGTIRENILFGKDM---RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRI 729 (1333)
Q Consensus 660 --~iayv~Q~~~i~-~~Tv~enI~~g~~~---~~----~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv 729 (1333)
.++|++|++.++ ..||+||+.|+... .. ++.+++++.+++. ...++++.+|||||||||
T Consensus 74 ~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~-----------~~~~~~~~~LSgGq~QRv 142 (369)
T PRK11000 74 ERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLA-----------HLLDRKPKALSGGQRQRV 142 (369)
T ss_pred HCCEEEEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCCh-----------hhhcCChhhCCHHHHHHH
Confidence 389999998876 46999999987432 11 1233334444332 223467789999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEecCchhhhh-cCCEEEEEeCCeEEEccChHHHH
Q 000720 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS-QKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKYEDLI 807 (1333)
Q Consensus 730 ~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~-~~TvIlvtH~~~~l~-~aD~i~vl~~G~i~~~g~~~~l~ 807 (1333)
+|||||+.+|+++||||||++||+..++.+.+.+.+...+ +.|+|+||||++++. .||+|++|++|++++.|+++++.
T Consensus 143 aLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~ 222 (369)
T PRK11000 143 AIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELY 222 (369)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999999999999988887654443333 789999999999875 59999999999999999999997
Q ss_pred hhcc
Q 000720 808 ADQN 811 (1333)
Q Consensus 808 ~~~~ 811 (1333)
..+.
T Consensus 223 ~~p~ 226 (369)
T PRK11000 223 HYPA 226 (369)
T ss_pred hCcc
Confidence 6443
No 145
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.2e-35 Score=337.76 Aligned_cols=202 Identities=28% Similarity=0.390 Sum_probs=165.9
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC---------
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g--------- 659 (1333)
.++++|++++|+.. ...+.|+| ||+|++||+++|+||||||||||+++|+|+++|.+|++ .++|
T Consensus 4 ~l~~~~l~~~~~~~-----~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i-~~~g~~i~~~~~~ 77 (279)
T PRK13650 4 IIEVKNLTFKYKED-----QEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQI-IIDGDLLTEENVW 77 (279)
T ss_pred eEEEEeEEEEcCCC-----CcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEE-EECCEECCcCcHH
Confidence 48899999999743 22458999 99999999999999999999999999999999999986 5655
Q ss_pred ----eEEEEcCCCC--CCCCCHHHHhccCCc---CCH----HHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHH
Q 000720 660 ----KKAYVPQSSW--IQTGTIRENILFGKD---MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQK 726 (1333)
Q Consensus 660 ----~iayv~Q~~~--i~~~Tv~enI~~g~~---~~~----~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQk 726 (1333)
+++|++|+|. ++..||+|||.|+.. .+. ++.+++++..++.. ..++.+.+||||||
T Consensus 78 ~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~-----------~~~~~~~~LSgGq~ 146 (279)
T PRK13650 78 DIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQD-----------FKEREPARLSGGQK 146 (279)
T ss_pred HHHhhceEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHh-----------HhhCCcccCCHHHH
Confidence 3699999984 567899999998742 122 22333444444432 23456789999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEecCchhhhhcCCEEEEEeCCeEEEccChHH
Q 000720 727 QRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS-QKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYED 805 (1333)
Q Consensus 727 qRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~-~~TvIlvtH~~~~l~~aD~i~vl~~G~i~~~g~~~~ 805 (1333)
||++||||++.+|+++||||||++||+.+.+.+.+.+.+...+ |+|+|++||+++.+..||+|++|++|+++..|++++
T Consensus 147 qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~ 226 (279)
T PRK13650 147 QRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRE 226 (279)
T ss_pred HHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 9999999999999999999999999999888777644333333 899999999999887799999999999999999988
Q ss_pred HHh
Q 000720 806 LIA 808 (1333)
Q Consensus 806 l~~ 808 (1333)
+..
T Consensus 227 ~~~ 229 (279)
T PRK13650 227 LFS 229 (279)
T ss_pred HHc
Confidence 865
No 146
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=1.5e-35 Score=301.05 Aligned_cols=192 Identities=29% Similarity=0.377 Sum_probs=163.5
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC----------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g---------- 659 (1333)
|+|+|++..|+.. .+.|+| ||+|++||++-|+||+||||||||++|.++.+|++|++ .++|
T Consensus 2 I~f~~V~k~Y~~g-------~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i-~~~~~dl~~l~~~~ 73 (223)
T COG2884 2 IRFENVSKAYPGG-------REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKI-LVNGHDLSRLKGRE 73 (223)
T ss_pred eeehhhhhhcCCC-------chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceE-EECCeecccccccc
Confidence 7899999999864 568999 99999999999999999999999999999999999986 5544
Q ss_pred ------eEEEEcCCCC-CCCCCHHHHhccCCcC---C----HHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHH
Q 000720 660 ------KKAYVPQSSW-IQTGTIRENILFGKDM---R----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (1333)
Q Consensus 660 ------~iayv~Q~~~-i~~~Tv~enI~~g~~~---~----~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQ 725 (1333)
+||+|+|+.- ++..||.||+.|.... . +++..++++..+|.+....+ +.+|||||
T Consensus 74 iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~l-----------P~~LSGGE 142 (223)
T COG2884 74 IPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARAL-----------PSQLSGGE 142 (223)
T ss_pred cchhhheeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcC-----------ccccCchH
Confidence 5899999975 5778999999996432 1 23445566666776655544 45899999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeCCeEEEcc
Q 000720 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSG 801 (1333)
Q Consensus 726 kqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~~g 801 (1333)
||||+||||+..+|+++|-||||.+|||..+.++++.+.+-...|.||+++|||.+.+.. --+++.+++|+++...
T Consensus 143 QQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~ 219 (223)
T COG2884 143 QQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDE 219 (223)
T ss_pred HHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEecc
Confidence 999999999999999999999999999999999987544445579999999999999876 6899999999998654
No 147
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.3e-35 Score=339.20 Aligned_cols=205 Identities=22% Similarity=0.334 Sum_probs=164.6
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC---------
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g--------- 659 (1333)
.|+++|++++|+.... ...+.+++ ||+|++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 2 ~i~~~~l~~~y~~~~~---~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i-~~~g~~~~~~~~~ 77 (305)
T PRK13651 2 QIKVKNIVKIFNKKLP---TELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTI-EWIFKDEKNKKKT 77 (305)
T ss_pred EEEEEEEEEEECCCCC---ccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEE-EEeceeccccccc
Confidence 3789999999975300 11358999 99999999999999999999999999999999999986 4421
Q ss_pred ----------------------------eEEEEcCCC--CCCCCCHHHHhccCCc---CCH----HHHHHHHHHcccchH
Q 000720 660 ----------------------------KKAYVPQSS--WIQTGTIRENILFGKD---MRQ----SFYEEVLEGCALNQD 702 (1333)
Q Consensus 660 ----------------------------~iayv~Q~~--~i~~~Tv~enI~~g~~---~~~----~~~~~v~~~~~l~~d 702 (1333)
.+||++|+| .++..||+|||.|+.. .++ ++..++++.+++..+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~ 157 (305)
T PRK13651 78 KEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDES 157 (305)
T ss_pred ccccccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChh
Confidence 369999986 4677899999998742 222 122333444443211
Q ss_pred HHhhcCCCccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhh
Q 000720 703 IEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEF 782 (1333)
Q Consensus 703 ~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~ 782 (1333)
..++++.+||||||||++|||||+.+|+++||||||++||+...+.+.+.+.+...+|+|||++|||+++
T Consensus 158 ----------~~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~ 227 (305)
T PRK13651 158 ----------YLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDN 227 (305)
T ss_pred ----------hhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHH
Confidence 2346788999999999999999999999999999999999999887776543333458999999999998
Q ss_pred h-hcCCEEEEEeCCeEEEccChHHHHh
Q 000720 783 L-DAADLVLVMKDGKIEQSGKYEDLIA 808 (1333)
Q Consensus 783 l-~~aD~i~vl~~G~i~~~g~~~~l~~ 808 (1333)
+ +.||+|++|++|++++.|+++++..
T Consensus 228 ~~~~adrv~vl~~G~i~~~g~~~~~~~ 254 (305)
T PRK13651 228 VLEWTKRTIFFKDGKIIKDGDTYDILS 254 (305)
T ss_pred HHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 7 4599999999999999999999875
No 148
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=2.9e-35 Score=340.35 Aligned_cols=200 Identities=27% Similarity=0.399 Sum_probs=163.9
Q ss_pred ccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC--------
Q 000720 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------- 659 (1333)
Q Consensus 589 ~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g-------- 659 (1333)
..++++|++++|++ ...+++ ||+|++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 6 ~~i~i~~l~k~~~~--------~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v-~i~G~~~~~~~~ 76 (306)
T PRK13537 6 APIDFRNVEKRYGD--------KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSI-SLCGEPVPSRAR 76 (306)
T ss_pred ceEEEEeEEEEECC--------eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEE-EECCEecccchH
Confidence 46999999999963 358999 99999999999999999999999999999999999986 6654
Q ss_pred ----eEEEEcCCCCCC-CCCHHHHhccCCcC---CHH----HHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHH
Q 000720 660 ----KKAYVPQSSWIQ-TGTIRENILFGKDM---RQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQ 727 (1333)
Q Consensus 660 ----~iayv~Q~~~i~-~~Tv~enI~~g~~~---~~~----~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkq 727 (1333)
++||+||++.++ +.|++||+.+.... +.. +.+++++.+++. ...+++..+|||||||
T Consensus 77 ~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G~~q 145 (306)
T PRK13537 77 HARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLE-----------NKADAKVGELSGGMKR 145 (306)
T ss_pred HHHhcEEEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-----------hHhcCchhhCCHHHHH
Confidence 489999998765 57999999863221 111 122333333332 1223566799999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeCCeEEEccChHHH
Q 000720 728 RIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDL 806 (1333)
Q Consensus 728 Rv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~~g~~~~l 806 (1333)
|++||||++++|++++|||||+|||+..++.+.+.+.+...+|+|||++||++++++. ||+|++|++|++++.|+++++
T Consensus 146 rl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l 225 (306)
T PRK13537 146 RLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHAL 225 (306)
T ss_pred HHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999888876543333458999999999999865 999999999999999999998
Q ss_pred Hh
Q 000720 807 IA 808 (1333)
Q Consensus 807 ~~ 808 (1333)
.+
T Consensus 226 ~~ 227 (306)
T PRK13537 226 IE 227 (306)
T ss_pred Hh
Confidence 65
No 149
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=2.5e-35 Score=330.01 Aligned_cols=198 Identities=22% Similarity=0.333 Sum_probs=160.7
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC----------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g---------- 659 (1333)
++++|++++|+. .+.+++ ||++++||+++|+||||||||||+++|+|+++|.+|++ .++|
T Consensus 1 l~~~~l~~~~~~--------~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i-~~~g~~~~~~~~~~ 71 (236)
T cd03219 1 LEVRGLTKRFGG--------LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSV-LFDGEDITGLPPHE 71 (236)
T ss_pred CeeeeeEEEECC--------EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceE-EECCEECCCCCHHH
Confidence 467899999963 358999 99999999999999999999999999999999999986 5544
Q ss_pred ----eEEEEcCCCCCCC-CCHHHHhccCCcCC-------------HH----HHHHHHHHcccchHHHhhcCCCccccCCC
Q 000720 660 ----KKAYVPQSSWIQT-GTIRENILFGKDMR-------------QS----FYEEVLEGCALNQDIEMWADGDLSVVGER 717 (1333)
Q Consensus 660 ----~iayv~Q~~~i~~-~Tv~enI~~g~~~~-------------~~----~~~~v~~~~~l~~d~~~~~~g~~t~ig~~ 717 (1333)
.++|++|++.++. .|++||+.++.... .. +..+.++.. |.....+.+
T Consensus 72 ~~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~ 140 (236)
T cd03219 72 IARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERV-----------GLADLADRP 140 (236)
T ss_pred HHhcCEEEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHc-----------CccchhhCC
Confidence 3799999987765 59999998764211 11 111122222 222334577
Q ss_pred CCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeCCe
Q 000720 718 GINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGK 796 (1333)
Q Consensus 718 g~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~ 796 (1333)
+.+||||||||++||||++.+|+++||||||++||+.+.+.+.+.+.+...+++|+|++||+++.+.. ||++++|++|+
T Consensus 141 ~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~ 220 (236)
T cd03219 141 AGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGR 220 (236)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCE
Confidence 88999999999999999999999999999999999999888877544433468999999999999865 99999999999
Q ss_pred EEEccChHHHHh
Q 000720 797 IEQSGKYEDLIA 808 (1333)
Q Consensus 797 i~~~g~~~~l~~ 808 (1333)
+++.|+++++..
T Consensus 221 i~~~~~~~~~~~ 232 (236)
T cd03219 221 VIAEGTPDEVRN 232 (236)
T ss_pred EEeecCHHHhcc
Confidence 999999888754
No 150
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.8e-35 Score=324.27 Aligned_cols=191 Identities=31% Similarity=0.404 Sum_probs=154.7
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC----------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g---------- 659 (1333)
++++|++++|+. .+++++ ||++++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 1 l~~~~l~~~~~~--------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i-~~~g~~~~~~~~~~ 71 (213)
T cd03259 1 LELKGLSKTYGS--------VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEI-LIDGRDVTGVPPER 71 (213)
T ss_pred CeeeeeEEEeCC--------eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEE-EECCEEcCcCchhh
Confidence 468899999963 358999 99999999999999999999999999999999999986 5554
Q ss_pred -eEEEEcCCCCCC-CCCHHHHhccCCcC---CHH----HHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHH
Q 000720 660 -KKAYVPQSSWIQ-TGTIRENILFGKDM---RQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQ 730 (1333)
Q Consensus 660 -~iayv~Q~~~i~-~~Tv~enI~~g~~~---~~~----~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~ 730 (1333)
.++|+||++.++ +.|++||+.++... ... +.++.++.+++. ...++.+.+||||||||++
T Consensus 72 ~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSgG~~qrl~ 140 (213)
T cd03259 72 RNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLE-----------GLLNRYPHELSGGQQQRVA 140 (213)
T ss_pred ccEEEEcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCh-----------hhhhcChhhCCHHHHHHHH
Confidence 479999998765 57999999875321 111 222333333332 2234567899999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEecCchhhhhc-CCEEEEEeCCeEEEcc
Q 000720 731 LARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSG 801 (1333)
Q Consensus 731 LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~-~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~~g 801 (1333)
||||++.+|+++||||||++||+.+.+.+.+.+.+... .++|||++||+++++.. ||+|++|++|++++.|
T Consensus 141 la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 141 LARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999998888765443333 38999999999998755 9999999999998765
No 151
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.9e-35 Score=326.64 Aligned_cols=200 Identities=27% Similarity=0.369 Sum_probs=164.8
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC---------
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g--------- 659 (1333)
.++++|++++|+. .+.+++ ||++++||+++|+||||||||||+++|+|+.+|++|++ .++|
T Consensus 3 ~l~~~~l~~~~~~--------~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i-~~~g~~i~~~~~~ 73 (241)
T PRK14250 3 EIEFKEVSYSSFG--------KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSI-LIDGVDIKTIDVI 73 (241)
T ss_pred eEEEEeEEEEeCC--------eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEE-EECCEEhhhcChH
Confidence 4789999999853 358999 99999999999999999999999999999999999986 5554
Q ss_pred ----eEEEEcCCCCCCCCCHHHHhccCCcCC---HHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHH
Q 000720 660 ----KKAYVPQSSWIQTGTIRENILFGKDMR---QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLA 732 (1333)
Q Consensus 660 ----~iayv~Q~~~i~~~Tv~enI~~g~~~~---~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LA 732 (1333)
.++|++|++.++..|++||+.++.... ..+..+.++.+++..+ ..++.+.+||||||||++||
T Consensus 74 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LS~G~~qrl~la 143 (241)
T PRK14250 74 DLRRKIGMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKE----------YATRDVKNLSGGEAQRVSIA 143 (241)
T ss_pred HhhhcEEEEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHH----------HhhCCcccCCHHHHHHHHHH
Confidence 379999999888889999998764321 2233344444444321 12356789999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEecCchhhhhc-CCEEEEEeCCeEEEccChHHHHh
Q 000720 733 RAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDLIA 808 (1333)
Q Consensus 733 RAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~-~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~~g~~~~l~~ 808 (1333)
||++++|+++||||||++||+.+.+.+.+.+..... .++|+|++||+++++.. ||+|++|++|++++.|+++++..
T Consensus 144 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 221 (241)
T PRK14250 144 RTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFT 221 (241)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhc
Confidence 999999999999999999999988877664433333 38999999999999765 99999999999999999998875
No 152
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.3e-35 Score=335.50 Aligned_cols=198 Identities=28% Similarity=0.394 Sum_probs=163.3
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC---------
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g--------- 659 (1333)
.++++|++++|+.. .+.++| ||++++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 4 ~l~~~~l~~~~~~~-------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i-~~~g~~~~~~~~~ 75 (274)
T PRK13647 4 IIEVEDLHFRYKDG-------TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRV-KVMGREVNAENEK 75 (274)
T ss_pred eEEEEEEEEEeCCC-------CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEE-EECCEECCCCCHH
Confidence 48899999999632 358999 99999999999999999999999999999999999986 6655
Q ss_pred ----eEEEEcCCC--CCCCCCHHHHhccCCc---CCH----HHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHH
Q 000720 660 ----KKAYVPQSS--WIQTGTIRENILFGKD---MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQK 726 (1333)
Q Consensus 660 ----~iayv~Q~~--~i~~~Tv~enI~~g~~---~~~----~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQk 726 (1333)
.++|++|+| .++..|++||+.|+.. .+. ++.+++++.+++.+ .....+.+||||||
T Consensus 76 ~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-----------~~~~~~~~LSgG~~ 144 (274)
T PRK13647 76 WVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWD-----------FRDKPPYHLSYGQK 144 (274)
T ss_pred HHHhhEEEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHH-----------HhcCChhhCCHHHH
Confidence 379999998 5678899999998642 121 22333444444421 23356789999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhh-cCCEEEEEeCCeEEEccChHH
Q 000720 727 QRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKYED 805 (1333)
Q Consensus 727 qRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~-~aD~i~vl~~G~i~~~g~~~~ 805 (1333)
||++||||++.+|+++||||||++||+.+..++.+.+.+...+|+|+|++||+++++. .||+|++|++|++++.|++++
T Consensus 145 qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 224 (274)
T PRK13647 145 KRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSL 224 (274)
T ss_pred HHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 9999999999999999999999999999988887654433345899999999999985 599999999999999999875
Q ss_pred H
Q 000720 806 L 806 (1333)
Q Consensus 806 l 806 (1333)
+
T Consensus 225 ~ 225 (274)
T PRK13647 225 L 225 (274)
T ss_pred h
Confidence 4
No 153
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=2.9e-35 Score=327.39 Aligned_cols=194 Identities=28% Similarity=0.409 Sum_probs=156.8
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCC-----cCCCCcEEEECC-----
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEI-----PRISGAAIKVHG----- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~-----~~~~G~~i~~~g----- 659 (1333)
|+++|++++|+. .+.+++ ||++++||+++|+||||||||||+++|+|+. +|.+|++ .++|
T Consensus 1 i~~~~l~~~~~~--------~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i-~~~g~~~~~ 71 (227)
T cd03260 1 IELRDLNVYYGD--------KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEV-LLDGKDIYD 71 (227)
T ss_pred CEEEEEEEEcCC--------ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEE-EECCEEhhh
Confidence 468999999863 358999 9999999999999999999999999999999 8999986 5544
Q ss_pred ----------eEEEEcCCCCCCCCCHHHHhccCCcCC--------HHHHHHHHHHcccchHHHhhcCCCccccCCC--CC
Q 000720 660 ----------KKAYVPQSSWIQTGTIRENILFGKDMR--------QSFYEEVLEGCALNQDIEMWADGDLSVVGER--GI 719 (1333)
Q Consensus 660 ----------~iayv~Q~~~i~~~Tv~enI~~g~~~~--------~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~--g~ 719 (1333)
.++|++|++.+++.|++||+.++.... .++.+++++.+++.+. ...+ +.
T Consensus 72 ~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~~ 140 (227)
T cd03260 72 LDVDVLELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDE-----------VKDRLHAL 140 (227)
T ss_pred cchHHHHHHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChH-----------HhccCCcc
Confidence 379999999877889999998753211 1122233343333221 1233 58
Q ss_pred CCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhh-cCCEEEEEeCCeEE
Q 000720 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMKDGKIE 798 (1333)
Q Consensus 720 ~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~-~aD~i~vl~~G~i~ 798 (1333)
+||||||||++||||++.+|+++||||||++||+.+++.+.+.+ +...+++|+|++||+++.+. .||++++|++|+++
T Consensus 141 ~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l-~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~ 219 (227)
T cd03260 141 GLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELI-AELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLV 219 (227)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHH-HHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEE
Confidence 99999999999999999999999999999999999988887644 44433389999999999876 59999999999999
Q ss_pred EccChHH
Q 000720 799 QSGKYED 805 (1333)
Q Consensus 799 ~~g~~~~ 805 (1333)
+.|++++
T Consensus 220 ~~g~~~~ 226 (227)
T cd03260 220 EFGPTEQ 226 (227)
T ss_pred EecCccc
Confidence 9988765
No 154
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.5e-35 Score=325.09 Aligned_cols=196 Identities=23% Similarity=0.327 Sum_probs=158.7
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC----------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g---------- 659 (1333)
|+++|++++|+. .+.+++ |+++++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 1 i~~~~~~~~~~~--------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i-~~~g~~~~~~~~~~ 71 (220)
T cd03265 1 IEVENLVKKYGD--------FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRA-TVAGHDVVREPREV 71 (220)
T ss_pred CEEEEEEEEECC--------EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE-EECCEecCcChHHH
Confidence 468999999853 358999 99999999999999999999999999999999999986 5554
Q ss_pred --eEEEEcCCCCCCC-CCHHHHhccCCc---CCH----HHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHH
Q 000720 660 --KKAYVPQSSWIQT-GTIRENILFGKD---MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRI 729 (1333)
Q Consensus 660 --~iayv~Q~~~i~~-~Tv~enI~~g~~---~~~----~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv 729 (1333)
.++|++|++.++. .|++||+.++.. .+. ++.++.++.+++.+ ....++.+||||||||+
T Consensus 72 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qr~ 140 (220)
T cd03265 72 RRRIGIVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLE-----------AADRLVKTYSGGMRRRL 140 (220)
T ss_pred hhcEEEecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHH-----------HhhCChhhCCHHHHHHH
Confidence 4799999987654 699999987432 111 12233344443321 22356789999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEecCchhhhhc-CCEEEEEeCCeEEEccChHHH
Q 000720 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS-QKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDL 806 (1333)
Q Consensus 730 ~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~-~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~~g~~~~l 806 (1333)
+||||++.+|+++||||||++||+++.+.+.+.+.+...+ ++|+|++||+++++.. ||++++|++|++++.|+++++
T Consensus 141 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 141 EIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred HHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 9999999999999999999999999988877654443444 7899999999999865 999999999999998887654
No 155
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=5.8e-35 Score=322.93 Aligned_cols=197 Identities=40% Similarity=0.738 Sum_probs=171.6
Q ss_pred EEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEEC------------
Q 000720 592 DIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVH------------ 658 (1333)
Q Consensus 592 ~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~------------ 658 (1333)
.+.|+.|+|+.+ .+++++ ||++++||+++|+||||||||||+++|+|+.+|++|++ .++
T Consensus 2 ~~~~~~~~~~~~-------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i-~~~g~~~~~~~~~~~ 73 (218)
T cd03290 2 QVTNGYFSWGSG-------LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKV-HWSNKNESEPSFEAT 73 (218)
T ss_pred eeeeeEEecCCC-------CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeE-EECCccccccccccc
Confidence 567899999754 468999 99999999999999999999999999999999999986 443
Q ss_pred -----CeEEEEcCCCCCCCCCHHHHhccCCcCCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHH
Q 000720 659 -----GKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLAR 733 (1333)
Q Consensus 659 -----g~iayv~Q~~~i~~~Tv~enI~~g~~~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LAR 733 (1333)
..++|++|+|.+++.|++||+.++...+.++.+++.+.+++.+.++..|.|+++.++.++.+||||||||++|||
T Consensus 74 ~~~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~lar 153 (218)
T cd03290 74 RSRNRYSVAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVAR 153 (218)
T ss_pred chhhcceEEEEcCCCccccccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHH
Confidence 248999999988889999999987655555566778888887777888888888888999999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHh-CCCeEEEecCchhhhhcCCEEEEEeCCe
Q 000720 734 AVYSNSDVYIFDDPFSAVDAHTGTHLFKQ-CLMGLL-SQKTVLYTTHQLEFLDAADLVLVMKDGK 796 (1333)
Q Consensus 734 Al~~~~~illLDEP~saLD~~~~~~l~~~-~~~~~~-~~~TvIlvtH~~~~l~~aD~i~vl~~G~ 796 (1333)
|++.+|+++||||||++||+.+.+.+.+. +++... +++|+|++||+++.+..||++++|++|+
T Consensus 154 al~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G~ 218 (218)
T cd03290 154 ALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS 218 (218)
T ss_pred HHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence 99999999999999999999998887763 454443 4789999999999988899999999884
No 156
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.5e-35 Score=343.13 Aligned_cols=203 Identities=25% Similarity=0.334 Sum_probs=164.4
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC----------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g---------- 659 (1333)
|+++|++++|+... ...+.+++ ||++++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 2 i~i~~l~~~y~~~~----~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I-~~~g~~i~~~~~~~ 76 (343)
T PRK11153 2 IELKNISKVFPQGG----RTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRV-LVDGQDLTALSEKE 76 (343)
T ss_pred EEEEeEEEEeCCCC----CceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEE-EECCEECCcCCHHH
Confidence 68999999997320 13468999 99999999999999999999999999999999999986 5543
Q ss_pred ------eEEEEcCCCCCCC-CCHHHHhccCCcC---CHH----HHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHH
Q 000720 660 ------KKAYVPQSSWIQT-GTIRENILFGKDM---RQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (1333)
Q Consensus 660 ------~iayv~Q~~~i~~-~Tv~enI~~g~~~---~~~----~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQ 725 (1333)
+++|++|++.++. .|++||+.++... ... +..+.++..++. .....++.+|||||
T Consensus 77 ~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~-----------~~~~~~~~~LSgGq 145 (343)
T PRK11153 77 LRKARRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLS-----------DKADRYPAQLSGGQ 145 (343)
T ss_pred HHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-----------hhhhCChhhCCHHH
Confidence 4899999988764 7999999876321 121 122233333222 23346778999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEecCchhhhhc-CCEEEEEeCCeEEEccCh
Q 000720 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKY 803 (1333)
Q Consensus 726 kqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~-~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~~g~~ 803 (1333)
|||++||||++++|+++||||||++||+.+.+.+.+.+.+... .++|+|++||+++.+.. ||+|++|++|++++.|+.
T Consensus 146 ~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~ 225 (343)
T PRK11153 146 KQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTV 225 (343)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCH
Confidence 9999999999999999999999999999998888765443333 37999999999999865 999999999999999999
Q ss_pred HHHHhh
Q 000720 804 EDLIAD 809 (1333)
Q Consensus 804 ~~l~~~ 809 (1333)
+++..+
T Consensus 226 ~~~~~~ 231 (343)
T PRK11153 226 SEVFSH 231 (343)
T ss_pred HHHHhC
Confidence 998763
No 157
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=2.9e-35 Score=324.87 Aligned_cols=189 Identities=24% Similarity=0.363 Sum_probs=153.0
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC----------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g---------- 659 (1333)
++++|++++|+.. ..+.+++ ||++++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 2 l~~~~l~~~~~~~------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i-~~~g~~~~~~~~~~ 74 (216)
T TIGR00960 2 IRFEQVSKAYPGG------HQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKI-RFNGQDLTRLRGRE 74 (216)
T ss_pred eEEEEEEEEecCC------CeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE-EECCEehhhcChhH
Confidence 6789999999642 2368999 99999999999999999999999999999999999986 5554
Q ss_pred ------eEEEEcCCCCCC-CCCHHHHhccCCc---CC----HHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHH
Q 000720 660 ------KKAYVPQSSWIQ-TGTIRENILFGKD---MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (1333)
Q Consensus 660 ------~iayv~Q~~~i~-~~Tv~enI~~g~~---~~----~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQ 725 (1333)
+++|++|++.++ ..|++||+.++.. .. .++..+.++.+++.+ ...+.+.+|||||
T Consensus 75 ~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgG~ 143 (216)
T TIGR00960 75 IPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEG-----------KAHALPMQLSGGE 143 (216)
T ss_pred HHHHHHhceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChh-----------hhhCChhhCCHHH
Confidence 379999998765 4699999987532 11 122233344443321 2335667999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeCCeE
Q 000720 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKI 797 (1333)
Q Consensus 726 kqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i 797 (1333)
|||++||||++++|+++||||||++||+.+.+.+.+.+.+...+++|+|++|||++++.. ||++++|++|+|
T Consensus 144 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 144 QQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999999888876544333458999999999999865 999999999975
No 158
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.1e-35 Score=336.00 Aligned_cols=205 Identities=22% Similarity=0.383 Sum_probs=164.1
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC---------
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g--------- 659 (1333)
.++++|++++|+.... ...++|++ ||+|++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 2 ~l~~~~l~~~y~~~~~---~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i-~~~g~~i~~~~~~ 77 (286)
T PRK13646 2 TIRFDNVSYTYQKGTP---YEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTV-TVDDITITHKTKD 77 (286)
T ss_pred EEEEEEEEEEECCCCc---cccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEE-EECCEECcccccc
Confidence 3789999999974300 12468999 99999999999999999999999999999999999986 5544
Q ss_pred --------eEEEEcCCC--CCCCCCHHHHhccCCc---CCHHH----HHHHHHHcccchHHHhhcCCCccccCCCCCCCC
Q 000720 660 --------KKAYVPQSS--WIQTGTIRENILFGKD---MRQSF----YEEVLEGCALNQDIEMWADGDLSVVGERGINLS 722 (1333)
Q Consensus 660 --------~iayv~Q~~--~i~~~Tv~enI~~g~~---~~~~~----~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LS 722 (1333)
++||++|+| .++..|++|||.|+.. .+... .++.++.+++.. ...++.+.+||
T Consensus 78 ~~~~~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~----------~~~~~~~~~LS 147 (286)
T PRK13646 78 KYIRPVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSR----------DVMSQSPFQMS 147 (286)
T ss_pred chHHHHHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCCh----------hhhhCCcccCC
Confidence 369999997 5677899999998642 22221 122233333221 12346788999
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEecCchhhhh-cCCEEEEEeCCeEEEc
Q 000720 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQS 800 (1333)
Q Consensus 723 GGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~-~~~TvIlvtH~~~~l~-~aD~i~vl~~G~i~~~ 800 (1333)
||||||++|||||+.+|+++||||||++||+.++..+.+.+.+... .|+|||++||+++.+. .||+|++|++|++++.
T Consensus 148 gGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~ 227 (286)
T PRK13646 148 GGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQ 227 (286)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999998887764433333 4799999999999875 5999999999999999
Q ss_pred cChHHHHh
Q 000720 801 GKYEDLIA 808 (1333)
Q Consensus 801 g~~~~l~~ 808 (1333)
|+++++.+
T Consensus 228 g~~~~~~~ 235 (286)
T PRK13646 228 TSPKELFK 235 (286)
T ss_pred CCHHHHHh
Confidence 99988765
No 159
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4e-35 Score=324.67 Aligned_cols=197 Identities=32% Similarity=0.430 Sum_probs=157.8
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC--------eE
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------KK 661 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g--------~i 661 (1333)
++++|++++|+... ...+++++ ||++++||+++|+||||||||||+++|+|+.+|++|++ .++| .+
T Consensus 1 l~~~~l~~~~~~~~----~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i-~~~g~~~~~~~~~i 75 (220)
T cd03293 1 LEVRNVSKTYGGGG----GAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEV-LVDGEPVTGPGPDR 75 (220)
T ss_pred CeEEEEEEEcCCCC----cceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEE-EECCEECccccCcE
Confidence 46899999996420 11468999 99999999999999999999999999999999999986 6655 58
Q ss_pred EEEcCCCCCCC-CCHHHHhccCCcC---CH----HHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHH
Q 000720 662 AYVPQSSWIQT-GTIRENILFGKDM---RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLAR 733 (1333)
Q Consensus 662 ayv~Q~~~i~~-~Tv~enI~~g~~~---~~----~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LAR 733 (1333)
+|++|++.++. .|++||+.++... .. ++.++.++..++.+ ...+++.+||||||||++|||
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgG~~qrl~la~ 144 (220)
T cd03293 76 GYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSG-----------FENAYPHQLSGGMRQRVALAR 144 (220)
T ss_pred EEEecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh-----------hhhCCcccCCHHHHHHHHHHH
Confidence 99999987765 7999999875321 11 12233334333321 234567899999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEecCchhhhh-cCCEEEEEe--CCeEEEccCh
Q 000720 734 AVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLD-AADLVLVMK--DGKIEQSGKY 803 (1333)
Q Consensus 734 Al~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~-~~~TvIlvtH~~~~l~-~aD~i~vl~--~G~i~~~g~~ 803 (1333)
|++.+|+++||||||++||+.+.+.+++.+.+... .++|+|++||+++++. .||++++|+ +|++++.++.
T Consensus 145 al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 145 ALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred HHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEe
Confidence 99999999999999999999998888765443333 4789999999999875 599999999 7999987764
No 160
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.5e-35 Score=344.65 Aligned_cols=205 Identities=25% Similarity=0.346 Sum_probs=167.9
Q ss_pred CccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC-------
Q 000720 588 DVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG------- 659 (1333)
Q Consensus 588 ~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g------- 659 (1333)
...++++|++++|+. ...+++ ||++++||+++|+|||||||||||++|+|+.+|++|++ .++|
T Consensus 17 ~~~l~l~~v~~~~~~--------~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I-~i~g~~i~~~~ 87 (377)
T PRK11607 17 TPLLEIRNLTKSFDG--------QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQI-MLDGVDLSHVP 87 (377)
T ss_pred CceEEEEeEEEEECC--------EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEE-EECCEECCCCC
Confidence 346999999999953 357899 99999999999999999999999999999999999986 6665
Q ss_pred ----eEEEEcCCCCCCC-CCHHHHhccCCcC---CHH----HHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHH
Q 000720 660 ----KKAYVPQSSWIQT-GTIRENILFGKDM---RQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQ 727 (1333)
Q Consensus 660 ----~iayv~Q~~~i~~-~Tv~enI~~g~~~---~~~----~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkq 727 (1333)
.+||++|++.++. .||.|||.|+... .+. +..+.++..++. ...+.++.+|||||||
T Consensus 88 ~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~-----------~~~~~~~~~LSgGq~Q 156 (377)
T PRK11607 88 PYQRPINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQ-----------EFAKRKPHQLSGGQRQ 156 (377)
T ss_pred HHHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-----------hhhcCChhhCCHHHHH
Confidence 3799999998764 6999999987432 211 222333333332 2234677899999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEecCchhhhh-cCCEEEEEeCCeEEEccChHH
Q 000720 728 RIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKYED 805 (1333)
Q Consensus 728 Rv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~-~~~TvIlvtH~~~~l~-~aD~i~vl~~G~i~~~g~~~~ 805 (1333)
||+|||||+.+|+++|||||||+||+..++.+.+.+.+... .+.|+|+||||.+++. .||+|++|++|++++.|++++
T Consensus 157 RVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~ 236 (377)
T PRK11607 157 RVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEE 236 (377)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHH
Confidence 99999999999999999999999999998887765544333 3789999999999865 599999999999999999999
Q ss_pred HHhhcch
Q 000720 806 LIADQNS 812 (1333)
Q Consensus 806 l~~~~~~ 812 (1333)
+..++..
T Consensus 237 ~~~~p~~ 243 (377)
T PRK11607 237 IYEHPTT 243 (377)
T ss_pred HHhCCcc
Confidence 9875443
No 161
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=4.4e-35 Score=320.73 Aligned_cols=187 Identities=32% Similarity=0.451 Sum_probs=153.2
Q ss_pred EeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC----------eE
Q 000720 593 IEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG----------KK 661 (1333)
Q Consensus 593 i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g----------~i 661 (1333)
++|++++|+.. .+.+++ ||++++||+++|+||||||||||+++|+|+.+|++|++ .++| ++
T Consensus 2 ~~~l~~~~~~~-------~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i-~~~g~~~~~~~~~~~i 73 (205)
T cd03226 2 IENISFSYKKG-------TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSI-LLNGKPIKAKERRKSI 73 (205)
T ss_pred cccEEEEeCCc-------CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEE-EECCEEhhhHHhhcce
Confidence 57888888641 358999 99999999999999999999999999999999999986 6655 47
Q ss_pred EEEcCCC--CCCCCCHHHHhccCCcCC---HHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHHc
Q 000720 662 AYVPQSS--WIQTGTIRENILFGKDMR---QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVY 736 (1333)
Q Consensus 662 ayv~Q~~--~i~~~Tv~enI~~g~~~~---~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~ 736 (1333)
+|++|+| .++..|++||+.++.... ..+.++.++.+++.+ ....++.+||||||||++||||++
T Consensus 74 ~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrv~laral~ 142 (205)
T cd03226 74 GYVMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYA-----------LKERHPLSLSGGQKQRLAIAAALL 142 (205)
T ss_pred EEEecChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCch-----------hcCCCchhCCHHHHHHHHHHHHHH
Confidence 9999997 456789999998864321 233445555555432 223567799999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeCCeEE
Q 000720 737 SNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIE 798 (1333)
Q Consensus 737 ~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~ 798 (1333)
.+|+++||||||++||+...+.+.+.+.+...+++|+|++||+++.+.. ||++++|++|+++
T Consensus 143 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 143 SGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred hCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 9999999999999999999887766443333568999999999999865 9999999999874
No 162
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-34 Score=328.48 Aligned_cols=203 Identities=24% Similarity=0.361 Sum_probs=164.2
Q ss_pred ccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCc-----CCCCcEEEECC---
Q 000720 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP-----RISGAAIKVHG--- 659 (1333)
Q Consensus 589 ~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~-----~~~G~~i~~~g--- 659 (1333)
..++++|++++|+. .+.+++ ||++++||+++|+||||||||||+++|+|+.+ |++|++ .++|
T Consensus 5 ~~l~~~~l~~~~~~--------~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i-~~~g~~i 75 (253)
T PRK14242 5 PKMEARGLSFFYGD--------FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEI-LLDGENI 75 (253)
T ss_pred cEEEEeeeEEEECC--------eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEE-EECCEEc
Confidence 46999999999963 258999 99999999999999999999999999999864 578875 4433
Q ss_pred ------------eEEEEcCCCCCCCCCHHHHhccCCcC----C----HHHHHHHHHHcccchHHHhhcCCCccccCCCCC
Q 000720 660 ------------KKAYVPQSSWIQTGTIRENILFGKDM----R----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGI 719 (1333)
Q Consensus 660 ------------~iayv~Q~~~i~~~Tv~enI~~g~~~----~----~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~ 719 (1333)
.++|++|++.+++.|++||+.++... . .++.++.++.+++.+.+. +..++.+.
T Consensus 76 ~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~ 148 (253)
T PRK14242 76 YDPHVDVVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVK-------DRLHESAL 148 (253)
T ss_pred cccccCHHHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhh-------HHhhCCcc
Confidence 47999999988778999999875321 1 112233344444432211 23456788
Q ss_pred CCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhh-cCCEEEEEeCCeEE
Q 000720 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMKDGKIE 798 (1333)
Q Consensus 720 ~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~-~aD~i~vl~~G~i~ 798 (1333)
+||||||||++||||++.+|+++||||||++||+.+...+.+ .++.+.+++|||++||+++++. .||+|++|++|+++
T Consensus 149 ~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~ 227 (253)
T PRK14242 149 GLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEE-LIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLI 227 (253)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999887766 4455556789999999999985 59999999999999
Q ss_pred EccChHHHHh
Q 000720 799 QSGKYEDLIA 808 (1333)
Q Consensus 799 ~~g~~~~l~~ 808 (1333)
+.|+++++.+
T Consensus 228 ~~g~~~~~~~ 237 (253)
T PRK14242 228 EVGPTEQIFT 237 (253)
T ss_pred EeCCHHHHHc
Confidence 9999988865
No 163
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=7.5e-35 Score=327.56 Aligned_cols=197 Identities=27% Similarity=0.358 Sum_probs=159.2
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC----------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g---------- 659 (1333)
++++|++++|+.+ .+++++ ||++++||+++|+||||||||||+++|+|+.+|++|++ .++|
T Consensus 2 l~~~~l~~~~~~~-------~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i-~~~g~~~~~~~~~~ 73 (243)
T TIGR02315 2 LEVENLSKVYPNG-------KQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSI-LLEGTDITKLRGKK 73 (243)
T ss_pred eEEEeeeeecCCC-------cceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEE-EECCEEhhhCCHHH
Confidence 6789999999622 358999 99999999999999999999999999999999999986 5544
Q ss_pred ------eEEEEcCCCCCC-CCCHHHHhccCCcC------------CH---HHHHHHHHHcccchHHHhhcCCCccccCCC
Q 000720 660 ------KKAYVPQSSWIQ-TGTIRENILFGKDM------------RQ---SFYEEVLEGCALNQDIEMWADGDLSVVGER 717 (1333)
Q Consensus 660 ------~iayv~Q~~~i~-~~Tv~enI~~g~~~------------~~---~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~ 717 (1333)
.++|++|++.++ ..|++||+.++... .+ ++..+.++.+++. ...+.+
T Consensus 74 ~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~ 142 (243)
T TIGR02315 74 LRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLA-----------DKAYQR 142 (243)
T ss_pred HHHHHhheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcH-----------hhhcCC
Confidence 379999998765 47999999875321 01 1122223333222 233467
Q ss_pred CCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEecCchhhhh-cCCEEEEEeCC
Q 000720 718 GINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLD-AADLVLVMKDG 795 (1333)
Q Consensus 718 g~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~-~~~TvIlvtH~~~~l~-~aD~i~vl~~G 795 (1333)
+.+||||||||++||||++.+|+++||||||++||+.+.+.+.+.+.+... .++|+|++||+++++. .||++++|++|
T Consensus 143 ~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G 222 (243)
T TIGR02315 143 ADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAG 222 (243)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECC
Confidence 889999999999999999999999999999999999998877764433333 3789999999999985 59999999999
Q ss_pred eEEEccChHHH
Q 000720 796 KIEQSGKYEDL 806 (1333)
Q Consensus 796 ~i~~~g~~~~l 806 (1333)
++++.|+++++
T Consensus 223 ~i~~~~~~~~~ 233 (243)
T TIGR02315 223 EIVFDGAPSEL 233 (243)
T ss_pred EEEecCCHHHh
Confidence 99999998886
No 164
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=7.2e-35 Score=319.81 Aligned_cols=191 Identities=26% Similarity=0.331 Sum_probs=156.9
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC----------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g---------- 659 (1333)
++++|++++|+. .+.+++ ||++++||+++|+||||||||||+++|+|+.+|++|++ .++|
T Consensus 1 l~~~~l~~~~~~--------~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i-~~~g~~~~~~~~~~ 71 (208)
T cd03268 1 LKTNDLTKTYGK--------KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEI-TFDGKSYQKNIEAL 71 (208)
T ss_pred CEEEEEEEEECC--------eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEE-EECCCcccchHHHH
Confidence 468999999953 368999 99999999999999999999999999999999999986 6654
Q ss_pred -eEEEEcCCCCCC-CCCHHHHhccCCc---CCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHH
Q 000720 660 -KKAYVPQSSWIQ-TGTIRENILFGKD---MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARA 734 (1333)
Q Consensus 660 -~iayv~Q~~~i~-~~Tv~enI~~g~~---~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARA 734 (1333)
.++|++|++.++ +.|++||+.++.. .++++.++.++..++.+ ...+++.+||||||||++||||
T Consensus 72 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrv~la~a 140 (208)
T cd03268 72 RRIGALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKD-----------SAKKKVKGFSLGMKQRLGIALA 140 (208)
T ss_pred hhEEEecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHH-----------HHhhhHhhCCHHHHHHHHHHHH
Confidence 479999998765 6799999987532 12333444455444432 2235678999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeCCeEEEcc
Q 000720 735 VYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSG 801 (1333)
Q Consensus 735 l~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~~g 801 (1333)
++.+|+++||||||++||+.+.+.+.+.+.+...+++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 141 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 141 LLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred HhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999888876444333458999999999999865 9999999999998764
No 165
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.2e-35 Score=327.30 Aligned_cols=198 Identities=27% Similarity=0.370 Sum_probs=159.3
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC----------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g---------- 659 (1333)
++++|++++|+.+ .+.+++ ||++++||+++|+||||||||||+++|+|+.+|++|++ .++|
T Consensus 1 l~~~~l~~~~~~~-------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i-~~~g~~~~~~~~~~ 72 (241)
T cd03256 1 IEVENLSKTYPNG-------KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSV-LIDGTDINKLKGKA 72 (241)
T ss_pred CEEeeEEEecCCc-------cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceE-EECCEeccccCHhH
Confidence 4688999999641 358999 99999999999999999999999999999999999986 5543
Q ss_pred ------eEEEEcCCCCCCC-CCHHHHhccCCcC------------CHH---HHHHHHHHcccchHHHhhcCCCccccCCC
Q 000720 660 ------KKAYVPQSSWIQT-GTIRENILFGKDM------------RQS---FYEEVLEGCALNQDIEMWADGDLSVVGER 717 (1333)
Q Consensus 660 ------~iayv~Q~~~i~~-~Tv~enI~~g~~~------------~~~---~~~~v~~~~~l~~d~~~~~~g~~t~ig~~ 717 (1333)
.++|++|++.++. .|++||+.++... ... +..+.++..++ ....+.+
T Consensus 73 ~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~ 141 (241)
T cd03256 73 LRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGL-----------LDKAYQR 141 (241)
T ss_pred HHHHHhccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCC-----------hhhhCCC
Confidence 3799999987654 7999999875321 011 11122222222 1234567
Q ss_pred CCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEecCchhhhh-cCCEEEEEeCC
Q 000720 718 GINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLD-AADLVLVMKDG 795 (1333)
Q Consensus 718 g~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~-~~~TvIlvtH~~~~l~-~aD~i~vl~~G 795 (1333)
+.+||||||||++||||++.+|+++||||||++||+.+.+.+.+.+.+... .++|+|++||+++.+. .||++++|++|
T Consensus 142 ~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G 221 (241)
T cd03256 142 ADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDG 221 (241)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 889999999999999999999999999999999999998888765444333 3799999999999987 59999999999
Q ss_pred eEEEccChHHHH
Q 000720 796 KIEQSGKYEDLI 807 (1333)
Q Consensus 796 ~i~~~g~~~~l~ 807 (1333)
++++.|+++++.
T Consensus 222 ~i~~~~~~~~~~ 233 (241)
T cd03256 222 RIVFDGPPAELT 233 (241)
T ss_pred EEEeecCHHHhh
Confidence 999999988863
No 166
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=1.2e-34 Score=326.61 Aligned_cols=202 Identities=27% Similarity=0.397 Sum_probs=163.7
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCC-----CCcEEEECC----
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRI-----SGAAIKVHG---- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~-----~G~~i~~~g---- 659 (1333)
.++++|++++|+.. ..+++ ||++++||+++|+|+||||||||+++|+|+.+|. +|++ .++|
T Consensus 1 ~l~~~~l~~~~~~~--------~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i-~~~g~~~~ 71 (247)
T TIGR00972 1 AIEIENLNLFYGEK--------EALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKV-LFDGQDIY 71 (247)
T ss_pred CEEEEEEEEEECCe--------eeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEE-EECCEEcc
Confidence 37899999999642 57999 9999999999999999999999999999999988 8976 4433
Q ss_pred -----------eEEEEcCCCCCCCCCHHHHhccCCcC----CH----HHHHHHHHHcccchHHHhhcCCCccccCCCCCC
Q 000720 660 -----------KKAYVPQSSWIQTGTIRENILFGKDM----RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1333)
Q Consensus 660 -----------~iayv~Q~~~i~~~Tv~enI~~g~~~----~~----~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~ 720 (1333)
.++|+||++.+++.|++||+.++... .. ++.+++++..++.++++ ...+.++.+
T Consensus 72 ~~~~~~~~~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~ 144 (247)
T TIGR00972 72 DKKIDVVELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVK-------DRLHDSALG 144 (247)
T ss_pred ccccchHHHHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchh-------hHhhCCccc
Confidence 47999999988779999999875321 11 12223333333332111 234567889
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhh-cCCEEEEEeCCeEEE
Q 000720 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQ 799 (1333)
Q Consensus 721 LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~-~aD~i~vl~~G~i~~ 799 (1333)
||||||||++||||++.+|+++||||||++||+.+...+.+ +++...+++|+|++||+++.+. .||++++|++|++++
T Consensus 145 LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~ 223 (247)
T TIGR00972 145 LSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEE-LIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVE 223 (247)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999887765 4555545689999999999875 499999999999999
Q ss_pred ccChHHHHh
Q 000720 800 SGKYEDLIA 808 (1333)
Q Consensus 800 ~g~~~~l~~ 808 (1333)
.|+++++..
T Consensus 224 ~~~~~~~~~ 232 (247)
T TIGR00972 224 YGPTEQIFT 232 (247)
T ss_pred eCCHHHHHh
Confidence 999988865
No 167
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-34 Score=327.18 Aligned_cols=203 Identities=26% Similarity=0.378 Sum_probs=164.1
Q ss_pred ccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcC-----CCCcEEEECC---
Q 000720 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR-----ISGAAIKVHG--- 659 (1333)
Q Consensus 589 ~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~-----~~G~~i~~~g--- 659 (1333)
..++++|++++|+. .+.+++ ||++++||+++|+|+||||||||+++|+|+++| ++|++ .++|
T Consensus 6 ~~l~~~~l~~~~~~--------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i-~~~g~~i 76 (254)
T PRK14273 6 AIIETENLNLFYTD--------FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNV-IYEGKNI 76 (254)
T ss_pred ceEEEeeeEEEeCC--------ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEE-EECCEec
Confidence 36999999999963 258999 999999999999999999999999999999987 47875 4433
Q ss_pred ------------eEEEEcCCCCCCCCCHHHHhccCCcC----CHH----HHHHHHHHcccchHHHhhcCCCccccCCCCC
Q 000720 660 ------------KKAYVPQSSWIQTGTIRENILFGKDM----RQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGI 719 (1333)
Q Consensus 660 ------------~iayv~Q~~~i~~~Tv~enI~~g~~~----~~~----~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~ 719 (1333)
.++|++|++.+++.|++|||.++... ... +..+.++.+++.+.+. ...+.++.
T Consensus 77 ~~~~~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~ 149 (254)
T PRK14273 77 YSNNFDILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVK-------DKLNTNAL 149 (254)
T ss_pred ccccccHHHHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhH-------HHHhCCcc
Confidence 37999999988889999999886421 111 1222333333321111 12346788
Q ss_pred CCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeCCeEE
Q 000720 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIE 798 (1333)
Q Consensus 720 ~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~ 798 (1333)
+||||||||++||||++.+|+++||||||++||+.+.+.+.+. ++.+.+++|+|++||+++++.. ||++++|++|+++
T Consensus 150 ~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~-l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~ 228 (254)
T PRK14273 150 SLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEEL-IINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIE 228 (254)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHH-HHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 9999999999999999999999999999999999998887764 4445567899999999999754 9999999999999
Q ss_pred EccChHHHHh
Q 000720 799 QSGKYEDLIA 808 (1333)
Q Consensus 799 ~~g~~~~l~~ 808 (1333)
+.|+++++.+
T Consensus 229 ~~g~~~~~~~ 238 (254)
T PRK14273 229 EESSTDELFF 238 (254)
T ss_pred EeCCHHHHHh
Confidence 9999998875
No 168
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.1e-32 Score=300.90 Aligned_cols=502 Identities=15% Similarity=0.159 Sum_probs=319.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 266 PQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGL--VLASVFLFAKTVESLTQRQWYFGAN 343 (1333)
Q Consensus 266 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~g~--~l~~~l~~~~~~~~l~~~~~~~~~~ 343 (1333)
.-.++|.+++.++....+.+...+ ++-.++-.+-+++-+.......-.-+ .+...++++.. +++.--.+-.+
T Consensus 4 ll~llr~nr~~~i~~~a~s~a~g~---~g~~lLa~in~al~e~~~~~~~~l~~f~~llllf~~ss~---is~lg~t~~gq 77 (546)
T COG4615 4 LLLLLRQNRWPFISVMALSLASGA---LGIGLLAFINQALIETADTSLLVLPEFLGLLLLFMVSSL---ISQLGLTTLGQ 77 (546)
T ss_pred HHHHhcccccHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhcccceeeHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 346778888888776665554443 34445544445553332210100011 11112222222 22222333344
Q ss_pred HHHHHHHHHHHHHHHHHHhccccCCC-ChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 000720 344 RIGIRVRSALTVLIYKRSMAIKFAGP-SSGIIINMINVDVERIGDFFLYIHRIWLLPVQVFLALVILYKNLGAAPAFAAL 422 (1333)
Q Consensus 344 ~~~~rir~~l~~~iy~K~L~ls~~~~-~~G~i~nlms~D~~~i~~~~~~~~~~w~~plqi~~~l~lL~~~lG~~a~l~gl 422 (1333)
..-.++|..++..|..--+.. -++ +++.++.-++.|+..|.-.+..+.++--+.+-+..+...|++.-+ ......+
T Consensus 78 ~~I~klr~~~~~kil~tpler--ier~~~~rlla~L~~Dvr~ISf~~s~lp~~~qa~il~l~s~aYLayLSp-~mf~l~v 154 (546)
T COG4615 78 HFIYKLRSEFIKKILDTPLER--IERLGSARLLAGLTSDVRNISFAFSRLPELVQAIILTLGSAAYLAYLSP-KMFLLTV 154 (546)
T ss_pred HHHHHHHHHHHHHHhcCHHHH--HHHhcccchhhhhcccccceeehHhhhHHHHHHHHHHHHHHHHHHHhhH-HHHHHHH
Confidence 444566665555444322211 112 778899999999999987777777666555555556666665555 5566666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchH--HHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 000720 423 FSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWE--QEFLKKL-LRLREIERDSLKKYLYTCS 499 (1333)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~R~~~~~E~L~~Ir~IK~~~wE--~~f~~~i-~~~R~~E~~~l~~~~~~~a 499 (1333)
+.+++.+..+....++..++..+..+..|+=.+..+.++.|-|-+|+..=. ..+.+.+ .+.++.|-. ..+...
T Consensus 155 V~ivv~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~~~~h~~~~~~~a~~~r~~----~~~~n~ 230 (546)
T COG4615 155 VWIVVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAEYVHNNLYIPDAQEYRHH----IIRANT 230 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHHHHHHhhhcCcchHHHHhh----hhhhhH
Confidence 677777777777777777777777888899999999999999999987632 2233332 223333321 111111
Q ss_pred HH-HHHHHHHHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCC
Q 000720 500 AI-AFLFWASPTLVSVITFGVCILLKTPLT-SGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKK 577 (1333)
Q Consensus 500 ~~-~~~~~~~p~lv~~~tF~~~~~~~~~Lt-~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~ 577 (1333)
+. ....|....+.+++....|+...-... ...+.|....+-.++.|+.+....++++.+|.++++||.++=..|+..+
T Consensus 231 f~~la~~~~ni~l~~lIGlvf~lal~~~w~st~~a~tivlvlLflr~pL~s~vgilP~l~~AqvA~~kiakle~~~~~a~ 310 (546)
T COG4615 231 FHLLAVNWSNIMLLGLIGLVFWLALSLGWASTNVAATIVLVLLFLRTPLLSAVGILPTLLTAQVAFNKIAKLELAPYKAD 310 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHhhcCCcccc
Confidence 11 223444444444433332222221122 2244444455566899999999999999999999999999877655332
Q ss_pred CCCCCCCCCCCccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEE
Q 000720 578 PITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIK 656 (1333)
Q Consensus 578 ~~~~~~~~~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~ 656 (1333)
-....+.+ +-..++++|+.|+|+++ .+.+.. |++|++||+|-|+|.||||||||++.++|+++|++|++ .
T Consensus 311 ~~~~q~~p-~~~~lelrnvrfay~~~-------~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I-~ 381 (546)
T COG4615 311 FPRPQAFP-DWKTLELRNVRFAYQDN-------AFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEI-L 381 (546)
T ss_pred CCCCCcCC-cccceeeeeeeeccCcc-------cceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCce-e
Confidence 21111111 23469999999999876 366777 99999999999999999999999999999999999997 8
Q ss_pred ECCeE-------------EEEcCCCCCCCCCHHHHhccCCc-CCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCC
Q 000720 657 VHGKK-------------AYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLS 722 (1333)
Q Consensus 657 ~~g~i-------------ayv~Q~~~i~~~Tv~enI~~g~~-~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LS 722 (1333)
++|+. +-|+-|-|+|+.++ -+.. -.++..+.-++...+.+.. .+.+|.. ....||
T Consensus 382 ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll-----~~e~~as~q~i~~~LqrLel~~kt-sl~d~~f-----s~~kLS 450 (546)
T COG4615 382 LDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLL-----GPEGKASPQLIEKWLQRLELAHKT-SLNDGRF-----SNLKLS 450 (546)
T ss_pred ECCccCCCCCHHHHHHHHHHHhhhHhhhHhhh-----CCccCCChHHHHHHHHHHHHhhhh-cccCCcc-----cccccc
Confidence 88752 22333334433221 1111 1222222223332222211 1222222 235799
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEecCchhhhhcCCEEEEEeCCeEEEc
Q 000720 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDAADLVLVMKDGKIEQS 800 (1333)
Q Consensus 723 GGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~-~~~TvIlvtH~~~~l~~aD~i~vl~~G~i~~~ 800 (1333)
.|||+|+++--|+.-+.|||+|||=-+.-||+-++..++..+-.++ .||||+.||||-.+...|||++.|++|++++.
T Consensus 451 tGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF~~ADrll~~~~G~~~e~ 529 (546)
T COG4615 451 TGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFIHADRLLEMRNGQLSEL 529 (546)
T ss_pred cchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCchhhhhHHHHHHHhcCceeec
Confidence 9999999999999999999999999999999999988887765444 59999999999999999999999999999874
No 169
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.5e-35 Score=332.36 Aligned_cols=187 Identities=32% Similarity=0.438 Sum_probs=152.3
Q ss_pred cccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC-----------------eEEEEcCCCCCC-
Q 000720 611 TIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-----------------KKAYVPQSSWIQ- 671 (1333)
Q Consensus 611 ~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g-----------------~iayv~Q~~~i~- 671 (1333)
..++++ ||++++||+++|+||||||||||+++|+|+++|++|++ .++| +++|++|++.++
T Consensus 37 ~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i-~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 115 (269)
T cd03294 37 TVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKV-LIDGQDIAAMSRKELRELRRKKISMVFQSFALLP 115 (269)
T ss_pred ceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEE-EECCEEccccChhhhhhhhcCcEEEEecCcccCC
Confidence 357899 99999999999999999999999999999999999986 4433 489999999876
Q ss_pred CCCHHHHhccCCc---CCH----HHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHHccCCCEEEE
Q 000720 672 TGTIRENILFGKD---MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIF 744 (1333)
Q Consensus 672 ~~Tv~enI~~g~~---~~~----~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illL 744 (1333)
+.|++||+.++.. .+. ++..++++.+++.+ ..+..+.+||||||||++||||++.+|+++||
T Consensus 116 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~Gq~qrv~lAral~~~p~illL 184 (269)
T cd03294 116 HRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEG-----------WEHKYPDELSGGMQQRVGLARALAVDPDILLM 184 (269)
T ss_pred CCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHh-----------HhhCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 5799999987532 111 12233344443322 23456779999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEecCchhhhh-cCCEEEEEeCCeEEEccChHHHHhh
Q 000720 745 DDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKYEDLIAD 809 (1333)
Q Consensus 745 DEP~saLD~~~~~~l~~~~~~~~~-~~~TvIlvtH~~~~l~-~aD~i~vl~~G~i~~~g~~~~l~~~ 809 (1333)
||||++||+.+.+.+.+.+.+... .|+|+|++||+++.+. .||++++|++|++++.|+++++.++
T Consensus 185 DEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 251 (269)
T cd03294 185 DEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTN 251 (269)
T ss_pred cCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHhC
Confidence 999999999998887765443333 3799999999999875 4999999999999999999988753
No 170
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=9.9e-35 Score=336.38 Aligned_cols=201 Identities=30% Similarity=0.427 Sum_probs=163.4
Q ss_pred CccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC-------
Q 000720 588 DVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG------- 659 (1333)
Q Consensus 588 ~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g------- 659 (1333)
+..|+++|++++|+. ...+++ ||++++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 2 ~~~i~~~~l~~~~~~--------~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i-~~~g~~~~~~~ 72 (303)
T TIGR01288 2 NVAIDLVGVSKSYGD--------KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKI-TVLGEPVPSRA 72 (303)
T ss_pred CcEEEEEeEEEEeCC--------eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEE-EECCEECcccH
Confidence 346899999999963 358999 99999999999999999999999999999999999986 5554
Q ss_pred -----eEEEEcCCCCCC-CCCHHHHhccCCc---CCHH----HHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHH
Q 000720 660 -----KKAYVPQSSWIQ-TGTIRENILFGKD---MRQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQK 726 (1333)
Q Consensus 660 -----~iayv~Q~~~i~-~~Tv~enI~~g~~---~~~~----~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQk 726 (1333)
++||+||++.++ ..|++||+.+... .+.. +.++.++.+++. ...+.++.+||||||
T Consensus 73 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~-----------~~~~~~~~~LSgG~~ 141 (303)
T TIGR01288 73 RLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLE-----------SKADVRVALLSGGMK 141 (303)
T ss_pred HHHhhcEEEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCh-----------hHhcCchhhCCHHHH
Confidence 489999998765 5799999975221 1211 112223333221 123456789999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeCCeEEEccChHH
Q 000720 727 QRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYED 805 (1333)
Q Consensus 727 qRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~~g~~~~ 805 (1333)
||++||||++++|+++||||||++||+.+++.+.+.+.+...+|+|||++||+++++.. ||+|++|++|+++..|++++
T Consensus 142 qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 221 (303)
T TIGR01288 142 RRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHA 221 (303)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 99999999999999999999999999999888876544433468999999999999865 99999999999999999988
Q ss_pred HHh
Q 000720 806 LIA 808 (1333)
Q Consensus 806 l~~ 808 (1333)
+..
T Consensus 222 ~~~ 224 (303)
T TIGR01288 222 LID 224 (303)
T ss_pred HHh
Confidence 864
No 171
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-34 Score=331.20 Aligned_cols=201 Identities=27% Similarity=0.391 Sum_probs=166.2
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC---------
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g--------- 659 (1333)
.++++|+++.|+.. ..+.+++ ||+|++||+++|+||||||||||+++|+|+.+|++|++ .++|
T Consensus 5 ~l~~~~l~~~~~~~------~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i-~~~g~~i~~~~~~ 77 (279)
T PRK13635 5 IIRVEHISFRYPDA------ATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTI-TVGGMVLSEETVW 77 (279)
T ss_pred eEEEEEEEEEeCCC------CccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEE-EECCEECCcCcHH
Confidence 58999999999642 2468999 99999999999999999999999999999999999986 6655
Q ss_pred ----eEEEEcCCC--CCCCCCHHHHhccCCcC---CH----HHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHH
Q 000720 660 ----KKAYVPQSS--WIQTGTIRENILFGKDM---RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQK 726 (1333)
Q Consensus 660 ----~iayv~Q~~--~i~~~Tv~enI~~g~~~---~~----~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQk 726 (1333)
.++|++|+| .+++.|++|||.++... .. ++.+++++.+++.. .+..++.+||||||
T Consensus 78 ~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~-----------~~~~~~~~LS~G~~ 146 (279)
T PRK13635 78 DVRRQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMED-----------FLNREPHRLSGGQK 146 (279)
T ss_pred HHhhheEEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChh-----------hhhCCcccCCHHHH
Confidence 379999998 46678999999886321 11 12333444444432 23456779999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEecCchhhhhcCCEEEEEeCCeEEEccChHH
Q 000720 727 QRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS-QKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYED 805 (1333)
Q Consensus 727 qRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~-~~TvIlvtH~~~~l~~aD~i~vl~~G~i~~~g~~~~ 805 (1333)
||++||||++.+|+++||||||++||+.+.+.+++.+.+...+ ++|+|++||+++.+..||+|++|++|++++.|+.++
T Consensus 147 qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~ 226 (279)
T PRK13635 147 QRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEE 226 (279)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHH
Confidence 9999999999999999999999999999988887654433333 789999999999987899999999999999999988
Q ss_pred HHh
Q 000720 806 LIA 808 (1333)
Q Consensus 806 l~~ 808 (1333)
+..
T Consensus 227 ~~~ 229 (279)
T PRK13635 227 IFK 229 (279)
T ss_pred Hhc
Confidence 765
No 172
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=1e-34 Score=321.50 Aligned_cols=197 Identities=25% Similarity=0.438 Sum_probs=160.5
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC----------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g---------- 659 (1333)
++++|+++.|+.. ..+++++ |+++++||+++|+||||||||||+++|+|+.+|++|++ .++|
T Consensus 1 l~~~~l~~~~~~~------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i-~~~g~~~~~~~~~~ 73 (220)
T cd03263 1 LQIRNLTKTYKKG------TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTA-YINGYSIRTDRKAA 73 (220)
T ss_pred CEEEeeEEEeCCC------CceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEE-EECCEecccchHHH
Confidence 4688999999642 2468999 99999999999999999999999999999999999986 5554
Q ss_pred --eEEEEcCCCCCC-CCCHHHHhccCCc---CCH----HHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHH
Q 000720 660 --KKAYVPQSSWIQ-TGTIRENILFGKD---MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRI 729 (1333)
Q Consensus 660 --~iayv~Q~~~i~-~~Tv~enI~~g~~---~~~----~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv 729 (1333)
+++|++|++.++ ..|++||+.+... ... ++.+++++.+++.+ ..+....+||||||||+
T Consensus 74 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrv 142 (220)
T cd03263 74 RQSLGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTD-----------KANKRARTLSGGMKRKL 142 (220)
T ss_pred hhhEEEecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHH-----------HHhChhhhCCHHHHHHH
Confidence 379999998766 6799999987432 111 22334444444321 22356679999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeCCeEEEccChHHH
Q 000720 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDL 806 (1333)
Q Consensus 730 ~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~~g~~~~l 806 (1333)
+||||++.+|+++||||||++||+.+.+.+.+ .++...+++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 143 ~la~al~~~p~llllDEP~~~LD~~~~~~l~~-~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 143 SLAIALIGGPSVLLLDEPTSGLDPASRRAIWD-LILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred HHHHHHhcCCCEEEECCCCCCCCHHHHHHHHH-HHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 99999999999999999999999999887776 44455557999999999999865 999999999999999987764
No 173
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=5.5e-35 Score=323.14 Aligned_cols=191 Identities=29% Similarity=0.390 Sum_probs=152.6
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC----------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g---------- 659 (1333)
++++|++++|+... ...+.+++ ||++++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 1 l~~~~l~~~~~~~~----~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i-~~~g~~~~~~~~~~ 75 (218)
T cd03255 1 IELKNLSKTYGGGG----EKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEV-RVDGTDISKLSEKE 75 (218)
T ss_pred CeEeeeEEEecCCC----cceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeE-EECCEehhhcchhH
Confidence 46889999996420 11468999 99999999999999999999999999999999999986 4432
Q ss_pred -------eEEEEcCCCCCCC-CCHHHHhccCCcCC---H----HHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChH
Q 000720 660 -------KKAYVPQSSWIQT-GTIRENILFGKDMR---Q----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGG 724 (1333)
Q Consensus 660 -------~iayv~Q~~~i~~-~Tv~enI~~g~~~~---~----~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGG 724 (1333)
.++|++|++.++. .|++||+.++.... . ++.++.++..++. ...++++.+||||
T Consensus 76 ~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G 144 (218)
T cd03255 76 LAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLG-----------DRLNHYPSELSGG 144 (218)
T ss_pred HHHHHhhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCc-----------hhhhcChhhcCHH
Confidence 4899999987765 59999998864321 1 1223333333332 2234677899999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEecCchhhhhcCCEEEEEeCCeE
Q 000720 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDAADLVLVMKDGKI 797 (1333)
Q Consensus 725 QkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~-~~~TvIlvtH~~~~l~~aD~i~vl~~G~i 797 (1333)
||||++||||++.+|+++||||||++||+.+.+.+.+.+.+... +++|+|++||+++.+..||++++|++|++
T Consensus 145 ~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 145 QQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218 (218)
T ss_pred HHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence 99999999999999999999999999999998877764443333 47999999999998878999999999974
No 174
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=2e-34 Score=316.10 Aligned_cols=188 Identities=26% Similarity=0.418 Sum_probs=158.7
Q ss_pred ccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC--------
Q 000720 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------- 659 (1333)
Q Consensus 589 ~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g-------- 659 (1333)
..++++|++++|+.. ..+.+++ |+++++||+++|+|+||||||||+++|+|+.+|.+|++ .++|
T Consensus 5 ~~l~~~~l~~~~~~~------~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i-~~~g~~~~~~~~ 77 (207)
T cd03369 5 GEIEVENLSVRYAPD------LPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKI-EIDGIDISTIPL 77 (207)
T ss_pred CeEEEEEEEEEeCCC------CcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeE-EECCEEhHHCCH
Confidence 469999999999743 2368999 99999999999999999999999999999999999986 5654
Q ss_pred -----eEEEEcCCCCCCCCCHHHHhccCCcCCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHH
Q 000720 660 -----KKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARA 734 (1333)
Q Consensus 660 -----~iayv~Q~~~i~~~Tv~enI~~g~~~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARA 734 (1333)
.++|++|+|.++++|++||+.+......+ ++.+.+. +++++.+||||||||++||||
T Consensus 78 ~~~~~~i~~v~q~~~~~~~tv~~~l~~~~~~~~~---~~~~~l~---------------~~~~~~~LS~G~~qrv~lara 139 (207)
T cd03369 78 EDLRSSLTIIPQDPTLFSGTIRSNLDPFDEYSDE---EIYGALR---------------VSEGGLNLSQGQRQLLCLARA 139 (207)
T ss_pred HHHHhhEEEEecCCcccCccHHHHhcccCCCCHH---HHHHHhh---------------ccCCCCcCCHHHHHHHHHHHH
Confidence 48999999998889999999765433322 2222211 346788999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhcCCEEEEEeCCeEEEccC
Q 000720 735 VYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGK 802 (1333)
Q Consensus 735 l~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~aD~i~vl~~G~i~~~g~ 802 (1333)
++.+|+++||||||++||+...+.+.+. ++...+++|+|++||+++.+..||++++|++|++.+.|+
T Consensus 140 l~~~p~llllDEP~~~LD~~~~~~l~~~-l~~~~~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~ 206 (207)
T cd03369 140 LLKRPRVLVLDEATASIDYATDALIQKT-IREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDH 206 (207)
T ss_pred HhhCCCEEEEeCCcccCCHHHHHHHHHH-HHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEecCC
Confidence 9999999999999999999998777654 444456899999999999987799999999999988775
No 175
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-34 Score=325.73 Aligned_cols=202 Identities=22% Similarity=0.345 Sum_probs=166.0
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCc---CCCCcEEEECC------
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP---RISGAAIKVHG------ 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~---~~~G~~i~~~g------ 659 (1333)
.|+++|+++.|+. .+.+++ ||++++||+++|+||||||||||+++|+|+.+ |++|++ .++|
T Consensus 2 ~~~~~~l~~~~~~--------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i-~~~g~~i~~~ 72 (246)
T PRK14269 2 IAKTTNLNLFYGK--------KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLV-EIEGKDVKNQ 72 (246)
T ss_pred ceeeeeeEEEECC--------EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEE-EECCEecccC
Confidence 4789999999963 368999 99999999999999999999999999999974 688986 5554
Q ss_pred -------eEEEEcCCCCCCCCCHHHHhccCCcCC---------HHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCCh
Q 000720 660 -------KKAYVPQSSWIQTGTIRENILFGKDMR---------QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSG 723 (1333)
Q Consensus 660 -------~iayv~Q~~~i~~~Tv~enI~~g~~~~---------~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSG 723 (1333)
+++|+||++.+++.|++||+.++.... .++..+.++.+++.+.+.. ..++++.+|||
T Consensus 73 ~~~~~~~~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~ 145 (246)
T PRK14269 73 DVVALRKNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKD-------KLKQNALALSG 145 (246)
T ss_pred CHHHHhhhEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhH-------HhcCCcccCCH
Confidence 379999999888899999998753211 1123345555555433221 23467789999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhh-cCCEEEEEeCCeEEEccC
Q 000720 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGK 802 (1333)
Q Consensus 724 GQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~-~aD~i~vl~~G~i~~~g~ 802 (1333)
|||||++||||++++|+++||||||++||+.+...+.+ ++....+++|+|++||+++.+. .||++++|++|++++.|+
T Consensus 146 G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~-~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~ 224 (246)
T PRK14269 146 GQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEE-LLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGE 224 (246)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH-HHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999877765 4554556899999999999886 599999999999999999
Q ss_pred hHHHHh
Q 000720 803 YEDLIA 808 (1333)
Q Consensus 803 ~~~l~~ 808 (1333)
.+++..
T Consensus 225 ~~~~~~ 230 (246)
T PRK14269 225 SKEFFE 230 (246)
T ss_pred HHHHHh
Confidence 998865
No 176
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=4.4e-35 Score=318.03 Aligned_cols=217 Identities=29% Similarity=0.408 Sum_probs=172.8
Q ss_pred cEEEeeeEEEcCCcccc--------------cC--CCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCC
Q 000720 590 AIDIEAGEYAWDAREEN--------------FK--KPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISG 652 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~--------------~~--~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G 652 (1333)
.|+++|++.-+.++... .+ ....-++| ||+|++||+..|.|-+|||||||+++|.++++|++|
T Consensus 4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G 83 (386)
T COG4175 4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRG 83 (386)
T ss_pred eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCc
Confidence 57788877766544110 00 11223677 999999999999999999999999999999999999
Q ss_pred cEEEECC-----------------eEEEEcCCCC-CCCCCHHHHhccCCcCC----HHHH---HHHHHHcccchHHHhhc
Q 000720 653 AAIKVHG-----------------KKAYVPQSSW-IQTGTIRENILFGKDMR----QSFY---EEVLEGCALNQDIEMWA 707 (1333)
Q Consensus 653 ~~i~~~g-----------------~iayv~Q~~~-i~~~Tv~enI~~g~~~~----~~~~---~~v~~~~~l~~d~~~~~ 707 (1333)
++ .++| ++++|+|+-- ++..||.||+.||.+.. .++. .+.++..+|...
T Consensus 84 ~i-lv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~----- 157 (386)
T COG4175 84 EI-LVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGY----- 157 (386)
T ss_pred eE-EECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhh-----
Confidence 97 7766 4699999965 56789999999997643 2333 334444554432
Q ss_pred CCCccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEecCchhhh-hc
Q 000720 708 DGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFL-DA 785 (1333)
Q Consensus 708 ~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~-~~~TvIlvtH~~~~l-~~ 785 (1333)
-...+.+|||||||||.|||||..+|||+|+|||||||||-.+.+.-+++++.-. -+||||+||||+++. +.
T Consensus 158 ------~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlri 231 (386)
T COG4175 158 ------ADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRI 231 (386)
T ss_pred ------hhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhc
Confidence 2256789999999999999999999999999999999999988888777665433 379999999999875 66
Q ss_pred CCEEEEEeCCeEEEccChHHHHhhcchHHHHHH
Q 000720 786 ADLVLVMKDGKIEQSGKYEDLIADQNSELVRQM 818 (1333)
Q Consensus 786 aD~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~ 818 (1333)
.|||.+|+||+|++.|+++|+..++..+|...+
T Consensus 232 G~rIaimkdG~ivQ~Gtp~eIl~~PAndYV~~F 264 (386)
T COG4175 232 GDRIAIMKDGEIVQVGTPEEILLNPANDYVRDF 264 (386)
T ss_pred cceEEEecCCeEEEeCCHHHHHcCccHHHHHHH
Confidence 999999999999999999999987766665543
No 177
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-34 Score=333.03 Aligned_cols=204 Identities=24% Similarity=0.396 Sum_probs=163.6
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC---------
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g--------- 659 (1333)
.|+++|++++|+.... ...++++| ||++++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 2 ~i~~~~l~~~~~~~~~---~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i-~~~g~~~~~~~~~ 77 (287)
T PRK13641 2 SIKFENVDYIYSPGTP---MEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTI-TIAGYHITPETGN 77 (287)
T ss_pred EEEEEEEEEEcCCCCC---ccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEE-EECCEECcccccc
Confidence 4789999999974200 02468999 99999999999999999999999999999999999986 5544
Q ss_pred --------eEEEEcCCC--CCCCCCHHHHhccCCc---CCHH----HHHHHHHHcccchHHHhhcCCCccccCCCCCCCC
Q 000720 660 --------KKAYVPQSS--WIQTGTIRENILFGKD---MRQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGINLS 722 (1333)
Q Consensus 660 --------~iayv~Q~~--~i~~~Tv~enI~~g~~---~~~~----~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LS 722 (1333)
.++|++|+| .+++.|++||+.++.. ...+ +.++.++.+++..+ ..+.++.+||
T Consensus 78 ~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~----------~~~~~~~~LS 147 (287)
T PRK13641 78 KNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSED----------LISKSPFELS 147 (287)
T ss_pred chHHHHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChh----------HhhCCcccCC
Confidence 379999997 4667899999987532 1111 22333343433211 2346788999
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCeEEEecCchhhhh-cCCEEEEEeCCeEEEc
Q 000720 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-LSQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQS 800 (1333)
Q Consensus 723 GGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~-~~~~TvIlvtH~~~~l~-~aD~i~vl~~G~i~~~ 800 (1333)
||||||++||||++.+|+++||||||++||+...+.+.+. ++.+ .++.|+|++||+++.+. .||++++|++|++++.
T Consensus 148 gGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~-l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~ 226 (287)
T PRK13641 148 GGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQL-FKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKH 226 (287)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHH-HHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999998877664 4444 35899999999999975 5999999999999999
Q ss_pred cChHHHHh
Q 000720 801 GKYEDLIA 808 (1333)
Q Consensus 801 g~~~~l~~ 808 (1333)
|+++++..
T Consensus 227 g~~~~~~~ 234 (287)
T PRK13641 227 ASPKEIFS 234 (287)
T ss_pred CCHHHHhc
Confidence 99988764
No 178
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-34 Score=330.89 Aligned_cols=199 Identities=29% Similarity=0.394 Sum_probs=163.3
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC----------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g---------- 659 (1333)
++++|++++|+.+ .+.+++ ||+|++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 2 l~~~~l~~~~~~~-------~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i-~~~g~~~~~~~~~~ 73 (274)
T PRK13644 2 IRLENVSYSYPDG-------TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKV-LVSGIDTGDFSKLQ 73 (274)
T ss_pred EEEEEEEEEcCCC-------CceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE-EECCEECCccccHH
Confidence 6789999999632 358999 99999999999999999999999999999999999986 5543
Q ss_pred ----eEEEEcCCCC--CCCCCHHHHhccCCcC---CHH----HHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHH
Q 000720 660 ----KKAYVPQSSW--IQTGTIRENILFGKDM---RQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQK 726 (1333)
Q Consensus 660 ----~iayv~Q~~~--i~~~Tv~enI~~g~~~---~~~----~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQk 726 (1333)
.++|++|+|. +++.|++||+.++... +.. +.+++++.+++. ...+..+.+||||||
T Consensus 74 ~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~-----------~~~~~~~~~LS~G~~ 142 (274)
T PRK13644 74 GIRKLVGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLE-----------KYRHRSPKTLSGGQG 142 (274)
T ss_pred HHHhheEEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCH-----------HHhcCCcccCCHHHH
Confidence 3799999985 5678999999886421 211 222333333332 223467789999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhcCCEEEEEeCCeEEEccChHHH
Q 000720 727 QRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDL 806 (1333)
Q Consensus 727 qRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~aD~i~vl~~G~i~~~g~~~~l 806 (1333)
||++||||++.+|+++||||||++||+.++..+.+.+.+...+|+|+|++||+++.++.||+|++|++|++++.|+.+++
T Consensus 143 qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 222 (274)
T PRK13644 143 QCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENV 222 (274)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHH
Confidence 99999999999999999999999999999888776544333458999999999999878999999999999999999887
Q ss_pred Hh
Q 000720 807 IA 808 (1333)
Q Consensus 807 ~~ 808 (1333)
..
T Consensus 223 ~~ 224 (274)
T PRK13644 223 LS 224 (274)
T ss_pred hc
Confidence 65
No 179
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=1e-34 Score=321.92 Aligned_cols=198 Identities=26% Similarity=0.388 Sum_probs=158.9
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC----------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g---------- 659 (1333)
++++|++++|+. .+.+++ ||++++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 1 l~~~~l~~~~~~--------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i-~~~g~~~~~~~~~~ 71 (222)
T cd03224 1 LEVENLNAGYGK--------SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSI-RFDGRDITGLPPHE 71 (222)
T ss_pred CEEeeEEeecCC--------eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceE-EECCEEcCCCCHHH
Confidence 468899999853 258999 99999999999999999999999999999999999986 5543
Q ss_pred ----eEEEEcCCCCCCC-CCHHHHhccCCcCC--HH---HHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHH
Q 000720 660 ----KKAYVPQSSWIQT-GTIRENILFGKDMR--QS---FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRI 729 (1333)
Q Consensus 660 ----~iayv~Q~~~i~~-~Tv~enI~~g~~~~--~~---~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv 729 (1333)
.++|++|++.++. .|++||+.++.... .+ ..+++++.. ..+ ....+.++.+||||||||+
T Consensus 72 ~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~------~~l----~~~~~~~~~~LS~G~~qrv 141 (222)
T cd03224 72 RARAGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELF------PRL----KERRKQLAGTLSGGEQQML 141 (222)
T ss_pred HHhcCeEEeccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHH------Hhh----hhhhhCchhhCCHHHHHHH
Confidence 3799999997665 59999998764322 11 111222211 111 1223467889999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeCCeEEEccChHHHH
Q 000720 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDLI 807 (1333)
Q Consensus 730 ~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~~g~~~~l~ 807 (1333)
+||||++.+|+++||||||++||+.+++.+.+.+.+...+++|+|++||+++.+.. ||++++|++|++++.|+.+++.
T Consensus 142 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 220 (222)
T cd03224 142 AIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELL 220 (222)
T ss_pred HHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHh
Confidence 99999999999999999999999999887776544333367899999999998755 9999999999999999887764
No 180
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=9.9e-35 Score=344.17 Aligned_cols=199 Identities=25% Similarity=0.420 Sum_probs=164.7
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC---------
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g--------- 659 (1333)
.++++|++++|+. ...+++ ||++++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 3 ~L~~~nls~~y~~--------~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I-~l~G~~i~~~~~~ 73 (402)
T PRK09536 3 MIDVSDLSVEFGD--------TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTV-LVAGDDVEALSAR 73 (402)
T ss_pred eEEEeeEEEEECC--------EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEE-EECCEEcCcCCHH
Confidence 4889999999963 368999 99999999999999999999999999999999999986 6654
Q ss_pred ----eEEEEcCCCCC-CCCCHHHHhccCCc-----CC---H---HHHHHHHHHcccchHHHhhcCCCccccCCCCCCCCh
Q 000720 660 ----KKAYVPQSSWI-QTGTIRENILFGKD-----MR---Q---SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSG 723 (1333)
Q Consensus 660 ----~iayv~Q~~~i-~~~Tv~enI~~g~~-----~~---~---~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSG 723 (1333)
++||++|++.+ ++.|++||+.++.. +. . ++.++.++..++. ...++...+|||
T Consensus 74 ~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~-----------~~~~~~~~~LSg 142 (402)
T PRK09536 74 AASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVA-----------QFADRPVTSLSG 142 (402)
T ss_pred HHhcceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCc-----------hhhcCChhhCCH
Confidence 37999999875 67899999998752 11 1 1223333333332 122456789999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhh-cCCEEEEEeCCeEEEccC
Q 000720 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGK 802 (1333)
Q Consensus 724 GQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~-~aD~i~vl~~G~i~~~g~ 802 (1333)
|||||++|||||+++|+++||||||++||+.++.++.+.+.+...+++|+|++||+++.+. .||++++|++|++++.|+
T Consensus 143 GerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~ 222 (402)
T PRK09536 143 GERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGP 222 (402)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecC
Confidence 9999999999999999999999999999999988887644333345789999999999985 599999999999999999
Q ss_pred hHHHHh
Q 000720 803 YEDLIA 808 (1333)
Q Consensus 803 ~~~l~~ 808 (1333)
+++++.
T Consensus 223 ~~ev~~ 228 (402)
T PRK09536 223 PADVLT 228 (402)
T ss_pred HHHHhC
Confidence 999875
No 181
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=9.5e-35 Score=320.07 Aligned_cols=188 Identities=31% Similarity=0.479 Sum_probs=151.1
Q ss_pred EeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC--------eEEE
Q 000720 593 IEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------KKAY 663 (1333)
Q Consensus 593 i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g--------~iay 663 (1333)
++|++++|+. .+.+++ ||++++||+++|+||||||||||+++|+|+.+|++|++ .++| +++|
T Consensus 2 ~~~l~~~~~~--------~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i-~~~g~~~~~~~~~i~~ 72 (213)
T cd03235 2 VEDLTVSYGG--------HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSI-RVFGKPLEKERKRIGY 72 (213)
T ss_pred cccceeEECC--------EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEE-EECCccHHHHHhheEE
Confidence 5788888853 357999 99999999999999999999999999999999999986 7766 3899
Q ss_pred EcCCCCC---CCCCHHHHhccCCcC--------C---HHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHH
Q 000720 664 VPQSSWI---QTGTIRENILFGKDM--------R---QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRI 729 (1333)
Q Consensus 664 v~Q~~~i---~~~Tv~enI~~g~~~--------~---~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv 729 (1333)
++|++.+ ++.|++||+.++... . .++.+++++.+++.+ ....++.+||||||||+
T Consensus 73 v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgG~~qrv 141 (213)
T cd03235 73 VPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSE-----------LADRQIGELSGGQQQRV 141 (213)
T ss_pred eccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHH-----------HHhCCcccCCHHHHHHH
Confidence 9999865 457999999875421 1 122333444444332 12356789999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeCCeEEEcc
Q 000720 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSG 801 (1333)
Q Consensus 730 ~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~~g 801 (1333)
+||||++.+|+++||||||++||+.+.+.+.+.+.+...+++|+|++||+++++.. ||++++|++| +++.|
T Consensus 142 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 142 LLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-EeecC
Confidence 99999999999999999999999999888876544433468999999999999865 9999999986 55443
No 182
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=1.2e-34 Score=323.47 Aligned_cols=198 Identities=25% Similarity=0.372 Sum_probs=159.5
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC----------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g---------- 659 (1333)
++++|++++|+. .+.+++ ||++++||+++|+||||||||||+++|+|..+|++|++ .++|
T Consensus 1 l~~~~l~~~~~~--------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i-~~~g~~~~~~~~~~ 71 (232)
T cd03218 1 LRAENLSKRYGK--------RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKI-LLDGQDITKLPMHK 71 (232)
T ss_pred CeEEEEEEEeCC--------EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEE-EECCEecccCCHhH
Confidence 468899999963 358999 99999999999999999999999999999999999986 5543
Q ss_pred ----eEEEEcCCCCCCC-CCHHHHhccCCcC---CHH----HHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHH
Q 000720 660 ----KKAYVPQSSWIQT-GTIRENILFGKDM---RQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQ 727 (1333)
Q Consensus 660 ----~iayv~Q~~~i~~-~Tv~enI~~g~~~---~~~----~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkq 727 (1333)
.++|++|++.++. .|++||+.++... ... +.++.++..++ ....++.+.+|||||||
T Consensus 72 ~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LS~G~~q 140 (232)
T cd03218 72 RARLGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHI-----------THLRKSKASSLSGGERR 140 (232)
T ss_pred HHhccEEEecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-----------hhhhhCChhhCCHHHHH
Confidence 3799999987665 5999999875321 111 11222222222 22345678899999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeCCeEEEccChHHH
Q 000720 728 RIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDL 806 (1333)
Q Consensus 728 Rv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~~g~~~~l 806 (1333)
|++||||++.+|+++||||||++||+.+.+.+.+.+.+...+++|+|++||+++.+.. ||++++|++|++++.|+.+++
T Consensus 141 rl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 220 (232)
T cd03218 141 RVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEI 220 (232)
T ss_pred HHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHh
Confidence 9999999999999999999999999999887776443333457899999999987754 999999999999999998887
Q ss_pred Hh
Q 000720 807 IA 808 (1333)
Q Consensus 807 ~~ 808 (1333)
..
T Consensus 221 ~~ 222 (232)
T cd03218 221 AA 222 (232)
T ss_pred hc
Confidence 54
No 183
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-34 Score=326.14 Aligned_cols=196 Identities=27% Similarity=0.309 Sum_probs=160.8
Q ss_pred ccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC--------
Q 000720 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------- 659 (1333)
Q Consensus 589 ~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g-------- 659 (1333)
..++++|++++|+. .+.+++ ||++++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 11 ~~l~i~~l~~~~~~--------~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i-~~~g~~~~~~~~ 81 (257)
T PRK11247 11 TPLLLNAVSKRYGE--------RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGEL-LAGTAPLAEARE 81 (257)
T ss_pred CcEEEEEEEEEECC--------cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEE-EECCEEHHHhhC
Confidence 45999999999963 358999 99999999999999999999999999999999999986 5654
Q ss_pred eEEEEcCCCCCCC-CCHHHHhccCCcC-CHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHHcc
Q 000720 660 KKAYVPQSSWIQT-GTIRENILFGKDM-RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYS 737 (1333)
Q Consensus 660 ~iayv~Q~~~i~~-~Tv~enI~~g~~~-~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~ 737 (1333)
.++|++|++.++. .|++||+.++... .+.+..+.++..++.. ..++++.+||||||||++||||++.
T Consensus 82 ~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~~~~LSgGqkqrl~laraL~~ 150 (257)
T PRK11247 82 DTRLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLAD-----------RANEWPAALSGGQKQRVALARALIH 150 (257)
T ss_pred ceEEEecCccCCCCCcHHHHHHhcccchHHHHHHHHHHHcCChh-----------HhcCChhhCCHHHHHHHHHHHHHhc
Confidence 4899999987665 7999999876321 1223334444444422 2346778999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEecCchhhhh-cCCEEEEEeCCeEEEccChH
Q 000720 738 NSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKYE 804 (1333)
Q Consensus 738 ~~~illLDEP~saLD~~~~~~l~~~~~~~~~-~~~TvIlvtH~~~~l~-~aD~i~vl~~G~i~~~g~~~ 804 (1333)
+|+++||||||++||+.+...+.+.+.+... .++|+|++|||++++. .||+|++|++|++++.|+.+
T Consensus 151 ~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 151 RPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence 9999999999999999998877764433333 4789999999999875 59999999999999887654
No 184
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.5e-34 Score=322.95 Aligned_cols=202 Identities=27% Similarity=0.364 Sum_probs=161.2
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC----------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g---------- 659 (1333)
|+++|++++|+... ...+++++ ||++++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 2 i~~~~l~~~~~~~~----~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~g~~~~~~~~~~ 76 (233)
T cd03258 2 IELKNVSKVFGDTG----GKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSV-LVDGTDLTLLSGKE 76 (233)
T ss_pred eEEecceEEccCCC----CceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE-EECCEEcccCCHHH
Confidence 67899999996420 11368999 99999999999999999999999999999999999986 5443
Q ss_pred ------eEEEEcCCCCCCC-CCHHHHhccCCc---CCHH----HHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHH
Q 000720 660 ------KKAYVPQSSWIQT-GTIRENILFGKD---MRQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (1333)
Q Consensus 660 ------~iayv~Q~~~i~~-~Tv~enI~~g~~---~~~~----~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQ 725 (1333)
.++|+||++.++. .|++||+.++.. .+.. ...+.++..++ ....+....+|||||
T Consensus 77 ~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LS~G~ 145 (233)
T cd03258 77 LRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGL-----------EDKADAYPAQLSGGQ 145 (233)
T ss_pred HHHHHhheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCC-----------hhhhhcChhhCCHHH
Confidence 3799999998765 799999987532 1111 11222232222 123345678999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEecCchhhhhc-CCEEEEEeCCeEEEccCh
Q 000720 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS-QKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKY 803 (1333)
Q Consensus 726 kqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~-~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~~g~~ 803 (1333)
|||++||||++.+|+++||||||++||+...+.+.+.+.....+ ++|+|++||+++.+.. ||++++|++|++++.|++
T Consensus 146 ~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~ 225 (233)
T cd03258 146 KQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTV 225 (233)
T ss_pred HHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCH
Confidence 99999999999999999999999999999988777644443343 7999999999999865 999999999999999988
Q ss_pred HHHHh
Q 000720 804 EDLIA 808 (1333)
Q Consensus 804 ~~l~~ 808 (1333)
+++.+
T Consensus 226 ~~~~~ 230 (233)
T cd03258 226 EEVFA 230 (233)
T ss_pred HHHhc
Confidence 87754
No 185
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=1.4e-34 Score=323.69 Aligned_cols=198 Identities=22% Similarity=0.368 Sum_probs=162.2
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC----------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g---------- 659 (1333)
++++|++++|+. .+.+++ |+++++||+++|+||||||||||+++|+|+.+|++|++ .++|
T Consensus 2 l~~~~l~~~~~~--------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i-~~~g~~i~~~~~~~ 72 (236)
T TIGR03864 2 LEVAGLSFAYGA--------RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQI-SVAGHDLRRAPRAA 72 (236)
T ss_pred EEEEeeEEEECC--------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEE-EECCEEcccCChhh
Confidence 678999999963 358999 99999999999999999999999999999999999986 5554
Q ss_pred --eEEEEcCCCCC-CCCCHHHHhccCCcC---CHHH----HHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHH
Q 000720 660 --KKAYVPQSSWI-QTGTIRENILFGKDM---RQSF----YEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRI 729 (1333)
Q Consensus 660 --~iayv~Q~~~i-~~~Tv~enI~~g~~~---~~~~----~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv 729 (1333)
.++|++|++.+ +..|++||+.++... .... ..+.++.. |.....++++.+||||||||+
T Consensus 73 ~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~-----------gl~~~~~~~~~~LS~G~~qrl 141 (236)
T TIGR03864 73 LARLGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARL-----------GLAERADDKVRELNGGHRRRV 141 (236)
T ss_pred hhhEEEeCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc-----------CChhhhcCChhhCCHHHHHHH
Confidence 37999999876 578999999865321 1111 11222222 222334577889999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEecCchhhhhcCCEEEEEeCCeEEEccChHHHHh
Q 000720 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIA 808 (1333)
Q Consensus 730 ~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~-~~~TvIlvtH~~~~l~~aD~i~vl~~G~i~~~g~~~~l~~ 808 (1333)
+||||++.+|+++||||||++||+.+.+.+.+.+.+... +++|+|++||+++.+..||++++|++|++++.|+++++.+
T Consensus 142 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 221 (236)
T TIGR03864 142 EIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRG 221 (236)
T ss_pred HHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHHH
Confidence 999999999999999999999999998888765443332 4799999999999987799999999999999999888865
No 186
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=9.7e-35 Score=332.86 Aligned_cols=200 Identities=29% Similarity=0.428 Sum_probs=167.8
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC---------
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g--------- 659 (1333)
.++++|++..|.. ....|++ ||++++||++|++||||||||||+++|+|+++|++|++ .++|
T Consensus 4 ~i~~~~l~k~~~~-------~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i-~i~G~~~~~~~~~ 75 (293)
T COG1131 4 VIEVRNLTKKYGG-------DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEI-LVLGYDVVKEPAK 75 (293)
T ss_pred eeeecceEEEeCC-------CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEE-EEcCEeCccCHHH
Confidence 4778899998863 2478999 99999999999999999999999999999999999986 7765
Q ss_pred ---eEEEEcCCCCC-CCCCHHHHhccCCcC-------CHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHH
Q 000720 660 ---KKAYVPQSSWI-QTGTIRENILFGKDM-------RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQR 728 (1333)
Q Consensus 660 ---~iayv~Q~~~i-~~~Tv~enI~~g~~~-------~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqR 728 (1333)
++||+||+|.+ ...|++||+.|.... +.++.+++++..+|.++. +.+..+||+|||||
T Consensus 76 ~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~-----------~~~~~~lS~G~kqr 144 (293)
T COG1131 76 VRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKA-----------NKKVRTLSGGMKQR 144 (293)
T ss_pred HHhheEEEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhh-----------CcchhhcCHHHHHH
Confidence 48999999865 567999999874322 234556666666654311 35678999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-CeEEEecCchhhhhc-CCEEEEEeCCeEEEccChHHH
Q 000720 729 IQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ-KTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDL 806 (1333)
Q Consensus 729 v~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~-~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~~g~~~~l 806 (1333)
++||+||.++|++++|||||+||||..+..+.+.+.....++ +||+++||.++.++. ||+|++|++|++++.|+.+++
T Consensus 145 l~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l 224 (293)
T COG1131 145 LSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEEL 224 (293)
T ss_pred HHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHH
Confidence 999999999999999999999999999887776544444556 799999999999876 999999999999999998887
Q ss_pred Hh
Q 000720 807 IA 808 (1333)
Q Consensus 807 ~~ 808 (1333)
..
T Consensus 225 ~~ 226 (293)
T COG1131 225 KE 226 (293)
T ss_pred HH
Confidence 54
No 187
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=100.00 E-value=1.7e-34 Score=321.04 Aligned_cols=203 Identities=30% Similarity=0.442 Sum_probs=167.1
Q ss_pred CccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC-------
Q 000720 588 DVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG------- 659 (1333)
Q Consensus 588 ~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g------- 659 (1333)
...++++|++++|+.+ ...+.+++ |+++++||+++|+||||||||||+++|+|+.+|++|++ .++|
T Consensus 9 ~~~l~~~~l~~~~~~~-----~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i-~~~g~~~~~~~ 82 (226)
T cd03248 9 KGIVKFQNVTFAYPTR-----PDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQV-LLDGKPISQYE 82 (226)
T ss_pred CceEEEEEEEEEeCCC-----CCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEE-EECCCchHHcC
Confidence 4569999999999753 22468999 99999999999999999999999999999999999986 6654
Q ss_pred ------eEEEEcCCCCCCCCCHHHHhccCCcCC-HHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHH
Q 000720 660 ------KKAYVPQSSWIQTGTIRENILFGKDMR-QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLA 732 (1333)
Q Consensus 660 ------~iayv~Q~~~i~~~Tv~enI~~g~~~~-~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LA 732 (1333)
+++|++|++.+++.|++||+.++.... .....+..+.....+.++.++.|..+..++++.+||||||||++||
T Consensus 83 ~~~~~~~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~la 162 (226)
T cd03248 83 HKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIA 162 (226)
T ss_pred HHHHHhhEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHH
Confidence 479999999888889999998765321 1112222233334455666666666777888999999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhcCCEEEEEeCCeE
Q 000720 733 RAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKI 797 (1333)
Q Consensus 733 RAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~aD~i~vl~~G~i 797 (1333)
||++++|+++||||||++||+++.+.+.+. ++.+.+++|+|++||+++++..||+|++|++|++
T Consensus 163 ral~~~p~llllDEPt~~LD~~~~~~l~~~-l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 163 RALIRNPQVLILDEATSALDAESEQQVQQA-LYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226 (226)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHH-HHHHcCCCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence 999999999999999999999998877664 4445557899999999999877999999999974
No 188
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=1.4e-34 Score=338.04 Aligned_cols=201 Identities=29% Similarity=0.410 Sum_probs=164.7
Q ss_pred CccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC-------
Q 000720 588 DVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG------- 659 (1333)
Q Consensus 588 ~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g------- 659 (1333)
...|+++|++++|+. ...+++ ||+|++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 39 ~~~i~i~nl~k~y~~--------~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i-~i~G~~~~~~~ 109 (340)
T PRK13536 39 TVAIDLAGVSKSYGD--------KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKI-TVLGVPVPARA 109 (340)
T ss_pred ceeEEEEEEEEEECC--------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEE-EECCEECCcch
Confidence 346999999999964 358999 99999999999999999999999999999999999986 6655
Q ss_pred -----eEEEEcCCCCCC-CCCHHHHhccCCcC---CHH----HHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHH
Q 000720 660 -----KKAYVPQSSWIQ-TGTIRENILFGKDM---RQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQK 726 (1333)
Q Consensus 660 -----~iayv~Q~~~i~-~~Tv~enI~~g~~~---~~~----~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQk 726 (1333)
.+||+||++.++ ..|++||+.+.... +.. +.+++++.+++. ...+++..+||||||
T Consensus 110 ~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~-----------~~~~~~~~~LS~G~k 178 (340)
T PRK13536 110 RLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLE-----------SKADARVSDLSGGMK 178 (340)
T ss_pred HHHhccEEEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-----------hhhCCChhhCCHHHH
Confidence 379999998764 67999999753211 111 122233333222 123466789999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeCCeEEEccChHH
Q 000720 727 QRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYED 805 (1333)
Q Consensus 727 qRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~~g~~~~ 805 (1333)
||++||||++++|+++||||||+|||+.+++.+.+.+.+...+|+|||++||+++.++. ||+|++|++|+++..|++++
T Consensus 179 qrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~ 258 (340)
T PRK13536 179 RRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHA 258 (340)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 99999999999999999999999999999888876554433468999999999999865 99999999999999999999
Q ss_pred HHh
Q 000720 806 LIA 808 (1333)
Q Consensus 806 l~~ 808 (1333)
+..
T Consensus 259 l~~ 261 (340)
T PRK13536 259 LID 261 (340)
T ss_pred HHh
Confidence 865
No 189
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=1.1e-34 Score=319.61 Aligned_cols=191 Identities=29% Similarity=0.408 Sum_probs=154.6
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC----------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g---------- 659 (1333)
|+++|++++|+. .+.+++ ||++++||+++|+||||||||||+++|+|+++|.+|++ .++|
T Consensus 1 i~~~~l~~~~~~--------~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v-~~~g~~~~~~~~~~ 71 (213)
T cd03301 1 VELENVTKRFGN--------VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRI-YIGGRDVTDLPPKD 71 (213)
T ss_pred CEEEeeEEEECC--------eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEE-EECCEECCcCCccc
Confidence 468999999864 258999 99999999999999999999999999999999999986 5544
Q ss_pred -eEEEEcCCCCCC-CCCHHHHhccCCcC---CHHH----HHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHH
Q 000720 660 -KKAYVPQSSWIQ-TGTIRENILFGKDM---RQSF----YEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQ 730 (1333)
Q Consensus 660 -~iayv~Q~~~i~-~~Tv~enI~~g~~~---~~~~----~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~ 730 (1333)
+++|++|++.++ +.|++||+.++... .... .++.++..++. ...++.+.+||||||||++
T Consensus 72 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G~~qr~~ 140 (213)
T cd03301 72 RDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIE-----------HLLDRKPKQLSGGQRQRVA 140 (213)
T ss_pred ceEEEEecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCH-----------HHHhCChhhCCHHHHHHHH
Confidence 489999999876 56999999875321 1111 12223333222 2234677899999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEecCchhhhhc-CCEEEEEeCCeEEEcc
Q 000720 731 LARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSG 801 (1333)
Q Consensus 731 LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~-~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~~g 801 (1333)
||||++.+|+++||||||++||+++.+.+.+.+.+... .++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 141 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 141 LGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 99999999999999999999999998888765444333 37999999999998765 9999999999998765
No 190
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.4e-35 Score=299.20 Aligned_cols=198 Identities=22% Similarity=0.346 Sum_probs=158.8
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC----------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g---------- 659 (1333)
+++.+.+.+|++ ....++| +|++++||+++|.|||||||||+|+.|.+++.|++|.+ .++|
T Consensus 2 l~v~~l~K~y~~-------~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v-~idg~d~~~~p~~v 73 (245)
T COG4555 2 LEVTDLTKSYGS-------KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKV-TIDGVDTVRDPSFV 73 (245)
T ss_pred eeeeehhhhccC-------HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceE-EEeecccccChHHH
Confidence 456777777754 2346889 99999999999999999999999999999999999986 6554
Q ss_pred --eEEEEcCCCC-CCCCCHHHHhccCCcCC-------HHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHH
Q 000720 660 --KKAYVPQSSW-IQTGTIRENILFGKDMR-------QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRI 729 (1333)
Q Consensus 660 --~iayv~Q~~~-i~~~Tv~enI~~g~~~~-------~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv 729 (1333)
++|.++.+.- ....|+||||.|....+ +.+.+++.+..++. ...+++..++|.||||||
T Consensus 74 rr~IGVl~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~-----------~~~~rRv~~~S~G~kqkV 142 (245)
T COG4555 74 RRKIGVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLL-----------EYLDRRVGEFSTGMKQKV 142 (245)
T ss_pred hhhcceecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChH-----------HHHHHHHhhhchhhHHHH
Confidence 5788885544 45689999998743221 22333333333222 234578889999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEecCchhhhhc-CCEEEEEeCCeEEEccChHHHH
Q 000720 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDLI 807 (1333)
Q Consensus 730 ~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~-~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~~g~~~~l~ 807 (1333)
+|||||.+||++|+||||+||||..+.+.+- +.+...+ .|++||++||.++.++. ||+|+++++|+++..|+.+++.
T Consensus 143 ~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~-dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~ 221 (245)
T COG4555 143 AIARALVHDPSILVLDEPTSGLDIRTRRKFH-DFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALD 221 (245)
T ss_pred HHHHHHhcCCCeEEEcCCCCCccHHHHHHHH-HHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHH
Confidence 9999999999999999999999998866554 4555544 58999999999999985 9999999999999999999887
Q ss_pred h
Q 000720 808 A 808 (1333)
Q Consensus 808 ~ 808 (1333)
.
T Consensus 222 ~ 222 (245)
T COG4555 222 A 222 (245)
T ss_pred H
Confidence 5
No 191
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-34 Score=330.72 Aligned_cols=200 Identities=23% Similarity=0.384 Sum_probs=164.7
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC---------
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g--------- 659 (1333)
.++++|++++|+.+ .+++++ ||++++||+++|+||||||||||+++|+|+++|.+|++ .++|
T Consensus 5 ~l~~~~l~~~~~~~-------~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i-~i~g~~~~~~~~~ 76 (283)
T PRK13636 5 ILKVEELNYNYSDG-------THALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRI-LFDGKPIDYSRKG 76 (283)
T ss_pred eEEEEeEEEEeCCC-------CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEE-EECCEECCCCcch
Confidence 58999999999632 358999 99999999999999999999999999999999999986 5554
Q ss_pred ------eEEEEcCCC--CCCCCCHHHHhccCCc---CCH----HHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChH
Q 000720 660 ------KKAYVPQSS--WIQTGTIRENILFGKD---MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGG 724 (1333)
Q Consensus 660 ------~iayv~Q~~--~i~~~Tv~enI~~g~~---~~~----~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGG 724 (1333)
.++|++|+| .+++.|++||+.++.. ... ++.++.++.+++.. ..+.++.+||||
T Consensus 77 ~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~-----------~~~~~~~~LS~G 145 (283)
T PRK13636 77 LMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEH-----------LKDKPTHCLSFG 145 (283)
T ss_pred HHHHHhhEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChh-----------hhhCCcccCCHH
Confidence 379999998 4677899999987532 111 22233344444421 234678899999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEecCchhhhh-cCCEEEEEeCCeEEEccC
Q 000720 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS-QKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGK 802 (1333)
Q Consensus 725 QkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~-~~TvIlvtH~~~~l~-~aD~i~vl~~G~i~~~g~ 802 (1333)
||||++|||||+.+|+++||||||+|||+...+.+.+.+.+...+ |+|||++||+++.+. .||++++|++|++++.|+
T Consensus 146 ~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~ 225 (283)
T PRK13636 146 QKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGN 225 (283)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 999999999999999999999999999999988777644333333 799999999999986 599999999999999999
Q ss_pred hHHHHh
Q 000720 803 YEDLIA 808 (1333)
Q Consensus 803 ~~~l~~ 808 (1333)
++++..
T Consensus 226 ~~~~~~ 231 (283)
T PRK13636 226 PKEVFA 231 (283)
T ss_pred HHHHhc
Confidence 998875
No 192
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-34 Score=322.36 Aligned_cols=197 Identities=26% Similarity=0.310 Sum_probs=158.3
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC---------
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g--------- 659 (1333)
.++++|++++|+.+. ...+.+++ ||++++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 5 ~l~~~~l~~~~~~~~----~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i-~~~g~~i~~~~~~ 79 (233)
T PRK11629 5 LLQCDNLCKRYQEGS----VQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDV-IFNGQPMSKLSSA 79 (233)
T ss_pred eEEEEeEEEEcCCCC----cceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEE-EECCEEcCcCCHH
Confidence 489999999997530 12468999 99999999999999999999999999999999999986 5543
Q ss_pred --------eEEEEcCCCCCCC-CCHHHHhccCCc---CCH----HHHHHHHHHcccchHHHhhcCCCccccCCCCCCCCh
Q 000720 660 --------KKAYVPQSSWIQT-GTIRENILFGKD---MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSG 723 (1333)
Q Consensus 660 --------~iayv~Q~~~i~~-~Tv~enI~~g~~---~~~----~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSG 723 (1333)
.++|++|++.++. .|++||+.++.. .+. ++..++++.+++. ...++++.+|||
T Consensus 80 ~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~-----------~~~~~~~~~LSg 148 (233)
T PRK11629 80 AKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLE-----------HRANHRPSELSG 148 (233)
T ss_pred HHHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc-----------hhhhCChhhCCH
Confidence 4899999987665 599999987421 111 1223333433332 233467789999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEecCchhhhhcCCEEEEEeCCeEEEccC
Q 000720 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGK 802 (1333)
Q Consensus 724 GQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~-~~~TvIlvtH~~~~l~~aD~i~vl~~G~i~~~g~ 802 (1333)
|||||++||||++.+|+++||||||++||+.+.+.+.+.+.+... +|+|+|++||+++++..+|++++|++|+|++.++
T Consensus 149 G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 149 GERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELS 228 (233)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEEec
Confidence 999999999999999999999999999999998877764433333 4799999999999998888999999999998765
No 193
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=1.6e-34 Score=319.55 Aligned_cols=195 Identities=22% Similarity=0.348 Sum_probs=156.2
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC----------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g---------- 659 (1333)
++++|++++|+... ...+.+++ ||++++||+++|+|+||||||||+++|+|+++|++|++ .++|
T Consensus 2 l~~~~v~~~~~~~~----~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i-~~~g~~~~~~~~~~ 76 (218)
T cd03266 2 ITADALTKRFRDVK----KTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFA-TVDGFDVVKEPAEA 76 (218)
T ss_pred eEEEEEEEecCCCC----ccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceE-EECCEEcccCHHHH
Confidence 67899999997430 11268999 99999999999999999999999999999999999986 5654
Q ss_pred --eEEEEcCCCCCCC-CCHHHHhccCCcC---CH----HHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHH
Q 000720 660 --KKAYVPQSSWIQT-GTIRENILFGKDM---RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRI 729 (1333)
Q Consensus 660 --~iayv~Q~~~i~~-~Tv~enI~~g~~~---~~----~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv 729 (1333)
.++|++|++.++. .|++||+.+.... .. ++..+.++..++. ...++++.+||||||||+
T Consensus 77 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G~~qrv 145 (218)
T cd03266 77 RRRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGME-----------ELLDRRVGGFSTGMRQKV 145 (218)
T ss_pred HhhEEEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH-----------HHHhhhhhhcCHHHHHHH
Confidence 4799999997766 5999999764321 11 1222333333332 233467789999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeCCeEEEcc
Q 000720 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSG 801 (1333)
Q Consensus 730 ~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~~g 801 (1333)
+||||++.+|+++||||||++||+.+.+.+.+.+.+...+++|+|++||+++++.. ||++++|++|++++.|
T Consensus 146 ~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 146 AIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 99999999999999999999999999887776544333458999999999998764 9999999999998754
No 194
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2e-34 Score=323.82 Aligned_cols=201 Identities=27% Similarity=0.395 Sum_probs=161.1
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC----------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g---------- 659 (1333)
++++|++++|+.. .+.+++ ||++++||+++|+||||||||||+++|+|+.+|++|++ .++|
T Consensus 1 l~~~~l~~~~~~~-------~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~g~~~~~~~~~~ 72 (242)
T cd03295 1 IEFENVTKRYGGG-------KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEI-FIDGEDIREQDPVE 72 (242)
T ss_pred CEEEEEEEEeCCc-------ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE-EECCeEcCcCChHH
Confidence 4688999999641 358999 99999999999999999999999999999999999986 5544
Q ss_pred ---eEEEEcCCCCCC-CCCHHHHhccCCcC---CH----HHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHH
Q 000720 660 ---KKAYVPQSSWIQ-TGTIRENILFGKDM---RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQR 728 (1333)
Q Consensus 660 ---~iayv~Q~~~i~-~~Tv~enI~~g~~~---~~----~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqR 728 (1333)
.++|++|++.++ ..|++||+.++..+ +. ++..+.++..++.. ....++++.+||||||||
T Consensus 73 ~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~---------~~~~~~~~~~LS~G~~qr 143 (242)
T cd03295 73 LRRKIGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDP---------AEFADRYPHELSGGQQQR 143 (242)
T ss_pred hhcceEEEccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCc---------HHHHhcChhhCCHHHHHH
Confidence 479999999776 47999999875322 11 11222333333321 012346788999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEecCchhhhh-cCCEEEEEeCCeEEEccChHHH
Q 000720 729 IQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS-QKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKYEDL 806 (1333)
Q Consensus 729 v~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~-~~TvIlvtH~~~~l~-~aD~i~vl~~G~i~~~g~~~~l 806 (1333)
++||||++.+|++++|||||++||+.+.+.+.+.+.+...+ ++|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 144 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 223 (242)
T cd03295 144 VGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEI 223 (242)
T ss_pred HHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 99999999999999999999999999988777654443333 799999999999875 5999999999999999998887
Q ss_pred Hh
Q 000720 807 IA 808 (1333)
Q Consensus 807 ~~ 808 (1333)
.+
T Consensus 224 ~~ 225 (242)
T cd03295 224 LR 225 (242)
T ss_pred Hc
Confidence 64
No 195
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.4e-34 Score=325.18 Aligned_cols=204 Identities=25% Similarity=0.365 Sum_probs=165.1
Q ss_pred ccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCc-----CCCCcEEEECC---
Q 000720 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP-----RISGAAIKVHG--- 659 (1333)
Q Consensus 589 ~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~-----~~~G~~i~~~g--- 659 (1333)
..++++|++++|+. .+.+++ ||++++||+++|+||||||||||+++|+|+++ |++|++ .++|
T Consensus 12 ~~l~~~~l~~~~~~--------~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i-~~~g~~~ 82 (260)
T PRK10744 12 SKIQVRNLNFYYGK--------FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEI-LLDGENI 82 (260)
T ss_pred ceEEEEEEEEEeCC--------eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEE-EECCEEc
Confidence 46899999999963 258999 99999999999999999999999999999986 478875 4433
Q ss_pred ------------eEEEEcCCCCCCCCCHHHHhccCCc----CCH----HHHHHHHHHcccchHHHhhcCCCccccCCCCC
Q 000720 660 ------------KKAYVPQSSWIQTGTIRENILFGKD----MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGI 719 (1333)
Q Consensus 660 ------------~iayv~Q~~~i~~~Tv~enI~~g~~----~~~----~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~ 719 (1333)
+++|++|++.++..|++||+.++.. .+. ++.+++++..++..++. ...++++.
T Consensus 83 ~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~ 155 (260)
T PRK10744 83 LTPKQDIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVK-------DKLHQSGY 155 (260)
T ss_pred cccccchHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhH-------HHHhcCCC
Confidence 4899999998877999999987632 121 12233344444322221 23456788
Q ss_pred CCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhh-cCCEEEEEeCCeEE
Q 000720 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMKDGKIE 798 (1333)
Q Consensus 720 ~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~-~aD~i~vl~~G~i~ 798 (1333)
+||||||||++||||++.+|+++||||||++||+.+.+.+.+. ++...+++|+|++||+++.+. .||++++|++|+++
T Consensus 156 ~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~-L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~ 234 (260)
T PRK10744 156 SLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEEL-ITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELI 234 (260)
T ss_pred CCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHH-HHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 9999999999999999999999999999999999998877664 444456789999999999885 49999999999999
Q ss_pred EccChHHHHhh
Q 000720 799 QSGKYEDLIAD 809 (1333)
Q Consensus 799 ~~g~~~~l~~~ 809 (1333)
+.|+.+++.++
T Consensus 235 ~~g~~~~~~~~ 245 (260)
T PRK10744 235 EFGNTDTIFTK 245 (260)
T ss_pred EeCCHHHHHhC
Confidence 99999988753
No 196
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=2.7e-34 Score=327.44 Aligned_cols=201 Identities=24% Similarity=0.301 Sum_probs=162.3
Q ss_pred ccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC--------
Q 000720 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------- 659 (1333)
Q Consensus 589 ~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g-------- 659 (1333)
..++++|++++|+. .+.+++ ||++++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 6 ~~l~~~~l~~~~~~--------~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i-~~~g~~i~~~~~ 76 (269)
T PRK11831 6 NLVDMRGVSFTRGN--------RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEI-LFDGENIPAMSR 76 (269)
T ss_pred ceEEEeCeEEEECC--------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE-EECCEEccccCh
Confidence 35899999999953 358999 99999999999999999999999999999999999986 5543
Q ss_pred --------eEEEEcCCCCCCC-CCHHHHhccCCc----CCHH----HHHHHHHHcccchHHHhhcCCCccccCCCCCCCC
Q 000720 660 --------KKAYVPQSSWIQT-GTIRENILFGKD----MRQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGINLS 722 (1333)
Q Consensus 660 --------~iayv~Q~~~i~~-~Tv~enI~~g~~----~~~~----~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LS 722 (1333)
+++|++|++.++. .|++||+.++.. .+.. +..+.++..++. .....++.+||
T Consensus 77 ~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-----------~~~~~~~~~LS 145 (269)
T PRK11831 77 SRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLR-----------GAAKLMPSELS 145 (269)
T ss_pred hhHHHHhhcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCCh-----------hhhhCChhhCC
Confidence 3799999998765 599999986421 1111 111223322221 12345678999
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEecCchhhhhc-CCEEEEEeCCeEEEc
Q 000720 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS-QKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQS 800 (1333)
Q Consensus 723 GGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~-~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~~ 800 (1333)
||||||++||||++.+|+++||||||++||+.+.+.+.+.+.+...+ ++|+|++||+++.+.. ||++++|++|++++.
T Consensus 146 gGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~ 225 (269)
T PRK11831 146 GGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAH 225 (269)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEe
Confidence 99999999999999999999999999999999988777644333333 7899999999998865 999999999999999
Q ss_pred cChHHHHhh
Q 000720 801 GKYEDLIAD 809 (1333)
Q Consensus 801 g~~~~l~~~ 809 (1333)
|+++++.+.
T Consensus 226 g~~~~~~~~ 234 (269)
T PRK11831 226 GSAQALQAN 234 (269)
T ss_pred CCHHHHhcC
Confidence 999998763
No 197
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=3.2e-34 Score=321.72 Aligned_cols=198 Identities=28% Similarity=0.377 Sum_probs=160.9
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC----------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g---------- 659 (1333)
++++|++++|+. .+.+++ ||++++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 2 l~~~~l~~~~~~--------~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~g~~~~~~~~~~ 72 (240)
T PRK09493 2 IEFKNVSKHFGP--------TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDL-IVDGLKVNDPKVDE 72 (240)
T ss_pred EEEEeEEEEECC--------eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEE-EECCEECCcCChhH
Confidence 678999999853 358999 99999999999999999999999999999999999986 5543
Q ss_pred -----eEEEEcCCCCCC-CCCHHHHhccCCc----CCHHH----HHHHHHHcccchHHHhhcCCCccccCCCCCCCChHH
Q 000720 660 -----KKAYVPQSSWIQ-TGTIRENILFGKD----MRQSF----YEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (1333)
Q Consensus 660 -----~iayv~Q~~~i~-~~Tv~enI~~g~~----~~~~~----~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQ 725 (1333)
.++|++|++.++ ..|++||+.++.. .+... ..++++..++ ....+.++.+|||||
T Consensus 73 ~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl-----------~~~~~~~~~~LS~G~ 141 (240)
T PRK09493 73 RLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGL-----------AERAHHYPSELSGGQ 141 (240)
T ss_pred HHHhhceEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCC-----------hHHHhcChhhcCHHH
Confidence 379999998765 5799999987531 11111 1222222222 223346778999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeCCeEEEccChH
Q 000720 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYE 804 (1333)
Q Consensus 726 kqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~~g~~~ 804 (1333)
|||++||||++.+|++++|||||++||+++.+.+.+.+.+...+++|+|++||+++++.. ||++++|++|++++.|+++
T Consensus 142 ~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 221 (240)
T PRK09493 142 QQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQ 221 (240)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHH
Confidence 999999999999999999999999999999888776443333458999999999999865 9999999999999999998
Q ss_pred HHHh
Q 000720 805 DLIA 808 (1333)
Q Consensus 805 ~l~~ 808 (1333)
++.+
T Consensus 222 ~~~~ 225 (240)
T PRK09493 222 VLIK 225 (240)
T ss_pred HHhc
Confidence 8865
No 198
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.4e-34 Score=329.83 Aligned_cols=203 Identities=26% Similarity=0.366 Sum_probs=165.7
Q ss_pred CccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCC---CcEEEECC----
Q 000720 588 DVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRIS---GAAIKVHG---- 659 (1333)
Q Consensus 588 ~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~---G~~i~~~g---- 659 (1333)
+..++++|+++.|+.. ..+.+++ ||++++||+++|+||||||||||+++|+|+++|.+ |++ .++|
T Consensus 3 ~~~l~i~~l~~~~~~~------~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i-~i~g~~~~ 75 (282)
T PRK13640 3 DNIVEFKHVSFTYPDS------KKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKI-TVDGITLT 75 (282)
T ss_pred CceEEEEEEEEEcCCC------CccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEE-EECCEECC
Confidence 3468999999999643 2458999 99999999999999999999999999999999987 665 5544
Q ss_pred ---------eEEEEcCCCC--CCCCCHHHHhccCCcC---CHH----HHHHHHHHcccchHHHhhcCCCccccCCCCCCC
Q 000720 660 ---------KKAYVPQSSW--IQTGTIRENILFGKDM---RQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGINL 721 (1333)
Q Consensus 660 ---------~iayv~Q~~~--i~~~Tv~enI~~g~~~---~~~----~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~L 721 (1333)
+++|++|+|. +++.|++||+.++... ..+ +..+.++.+++.+ ..+..+.+|
T Consensus 76 ~~~~~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-----------~~~~~~~~L 144 (282)
T PRK13640 76 AKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLD-----------YIDSEPANL 144 (282)
T ss_pred cCCHHHHHhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChh-----------HhcCCcccC
Confidence 4799999984 5678999999886322 121 2233344444322 234677899
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEecCchhhhhcCCEEEEEeCCeEEEc
Q 000720 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS-QKTVLYTTHQLEFLDAADLVLVMKDGKIEQS 800 (1333)
Q Consensus 722 SGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~-~~TvIlvtH~~~~l~~aD~i~vl~~G~i~~~ 800 (1333)
|||||||++||||++++|+++||||||++||+.+.+.+.+.+.+...+ |+|||++||+++.+..||++++|++|++++.
T Consensus 145 S~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~ 224 (282)
T PRK13640 145 SGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQ 224 (282)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999999999999999988887654433333 7899999999999878999999999999999
Q ss_pred cChHHHHh
Q 000720 801 GKYEDLIA 808 (1333)
Q Consensus 801 g~~~~l~~ 808 (1333)
|+++++..
T Consensus 225 g~~~~~~~ 232 (282)
T PRK13640 225 GSPVEIFS 232 (282)
T ss_pred CCHHHHhc
Confidence 99988865
No 199
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=1.8e-34 Score=339.34 Aligned_cols=192 Identities=30% Similarity=0.457 Sum_probs=157.6
Q ss_pred cccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC---------------------eEEEEcCCC
Q 000720 611 TIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------------------KKAYVPQSS 668 (1333)
Q Consensus 611 ~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g---------------------~iayv~Q~~ 668 (1333)
...++| ||++++||+++|+|+||||||||+++|+|+++|++|++ .++| +++|++|++
T Consensus 37 ~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I-~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~ 115 (382)
T TIGR03415 37 VVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSV-LVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKF 115 (382)
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEE-EECCEecccccccCCHHHHHHHhcCCEEEEECCC
Confidence 456899 99999999999999999999999999999999999986 5654 489999999
Q ss_pred CCCC-CCHHHHhccCCcC---CH----HHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHHccCCC
Q 000720 669 WIQT-GTIRENILFGKDM---RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSD 740 (1333)
Q Consensus 669 ~i~~-~Tv~enI~~g~~~---~~----~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ 740 (1333)
.+++ .|++||+.++... .+ .+..+.++..++.. ..+..+.+||||||||++|||||+++|+
T Consensus 116 ~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~-----------~~~~~~~~LSgGq~QRV~LARALa~~P~ 184 (382)
T TIGR03415 116 ALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQ-----------WADKKPGELSGGMQQRVGLARAFAMDAD 184 (382)
T ss_pred cCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCch-----------hhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 8775 7999999987432 11 12233444444322 2345678999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEecCchhhh-hcCCEEEEEeCCeEEEccChHHHHhhcchHH
Q 000720 741 VYIFDDPFSAVDAHTGTHLFKQCLMGLLS-QKTVLYTTHQLEFL-DAADLVLVMKDGKIEQSGKYEDLIADQNSEL 814 (1333)
Q Consensus 741 illLDEP~saLD~~~~~~l~~~~~~~~~~-~~TvIlvtH~~~~l-~~aD~i~vl~~G~i~~~g~~~~l~~~~~~~~ 814 (1333)
|+||||||+|||+.+++.+.+.+.+...+ ++|+|++|||++++ +.||+|++|++|++++.|+++++..++...+
T Consensus 185 ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~~p~~~~ 260 (382)
T TIGR03415 185 ILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLNPANDY 260 (382)
T ss_pred EEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhhCcchHH
Confidence 99999999999999998888766544443 79999999999987 5599999999999999999999976443333
No 200
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.2e-34 Score=316.48 Aligned_cols=191 Identities=26% Similarity=0.412 Sum_probs=154.4
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC---------e
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------K 660 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g---------~ 660 (1333)
++++|+++.|+. .+.+++ ||++++||+++|+||||||||||+++|+|+.+|++|++ .++| .
T Consensus 1 l~~~~l~~~~~~--------~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~g~~~~~~~~~~ 71 (210)
T cd03269 1 LEVENVTKRFGR--------VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEV-LFDGKPLDIAARNR 71 (210)
T ss_pred CEEEEEEEEECC--------EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEE-EECCCchhHHHHcc
Confidence 468899999853 358999 99999999999999999999999999999999999986 6665 4
Q ss_pred EEEEcCCCCCCC-CCHHHHhccCCcC---CH----HHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHH
Q 000720 661 KAYVPQSSWIQT-GTIRENILFGKDM---RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLA 732 (1333)
Q Consensus 661 iayv~Q~~~i~~-~Tv~enI~~g~~~---~~----~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LA 732 (1333)
++|++|++.++. .|++||+.+.... .. ++..+.++..++. ...++++.+||||||||++||
T Consensus 72 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G~~qrl~la 140 (210)
T cd03269 72 IGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELS-----------EYANKRVEELSKGNQQKVQFI 140 (210)
T ss_pred EEEeccCCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCh-----------HHHhCcHhhCCHHHHHHHHHH
Confidence 899999987665 6999999874321 11 1122233333222 233456789999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeCCeEEEcc
Q 000720 733 RAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSG 801 (1333)
Q Consensus 733 RAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~~g 801 (1333)
||++.+|+++||||||++||+.+.+.+.+.+.+...+++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 141 ~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 141 AAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred HHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 99999999999999999999999888877544433457899999999998854 9999999999998654
No 201
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=3.9e-34 Score=333.39 Aligned_cols=218 Identities=21% Similarity=0.322 Sum_probs=169.1
Q ss_pred CccEEEeeeEEEcCCcccc-----cCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC--
Q 000720 588 DVAIDIEAGEYAWDAREEN-----FKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-- 659 (1333)
Q Consensus 588 ~~~I~i~~~~fsw~~~~~~-----~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g-- 659 (1333)
+..++++|.+++|+.+... .......++| ||+|++||+++|+|+||||||||+++|+|+++|++|++ .++|
T Consensus 6 ~~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I-~~~G~~ 84 (331)
T PRK15079 6 KVLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEV-AWLGKD 84 (331)
T ss_pred CceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEE-EECCEE
Confidence 3468999999999642100 0012457899 99999999999999999999999999999999999986 5543
Q ss_pred --------------eEEEEcCCCC--C-CCCCHHHHhccCC-----cCCHH----HHHHHHHHcccchHHHhhcCCCccc
Q 000720 660 --------------KKAYVPQSSW--I-QTGTIRENILFGK-----DMRQS----FYEEVLEGCALNQDIEMWADGDLSV 713 (1333)
Q Consensus 660 --------------~iayv~Q~~~--i-~~~Tv~enI~~g~-----~~~~~----~~~~v~~~~~l~~d~~~~~~g~~t~ 713 (1333)
+++||+|+|. + +..||.|||.++. ...++ +.++.++..++.+ ..
T Consensus 85 i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~----------~~ 154 (331)
T PRK15079 85 LLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLP----------NL 154 (331)
T ss_pred CCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCh----------HH
Confidence 4899999983 4 4679999997532 12221 1223334333321 12
Q ss_pred cCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEecCchhhhhc-CCEEEE
Q 000720 714 VGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA-ADLVLV 791 (1333)
Q Consensus 714 ig~~g~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~-~~~TvIlvtH~~~~l~~-aD~i~v 791 (1333)
.+..+.+|||||||||+||||++.+|+++|+||||+|||+.++.++.+.+.+... .+.|+|+||||++.+.. ||+|++
T Consensus 155 ~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~v 234 (331)
T PRK15079 155 INRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLV 234 (331)
T ss_pred hcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEE
Confidence 3567889999999999999999999999999999999999999888875443333 37899999999999865 999999
Q ss_pred EeCCeEEEccChHHHHhhcchHHHH
Q 000720 792 MKDGKIEQSGKYEDLIADQNSELVR 816 (1333)
Q Consensus 792 l~~G~i~~~g~~~~l~~~~~~~~~~ 816 (1333)
|++|+|++.|+.+++.++....+.+
T Consensus 235 l~~G~ive~g~~~~i~~~~~~py~~ 259 (331)
T PRK15079 235 MYLGHAVELGTYDEVYHNPLHPYTK 259 (331)
T ss_pred EECCEEEEEcCHHHHHcCCCCHHHH
Confidence 9999999999999998644434433
No 202
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.1e-34 Score=316.88 Aligned_cols=189 Identities=24% Similarity=0.374 Sum_probs=153.6
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC----------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g---------- 659 (1333)
|+++|+++.|+. .+.+++ ||++++| +++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 1 i~~~~~~~~~~~--------~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i-~~~g~~~~~~~~~~ 70 (211)
T cd03264 1 LQLENLTKRYGK--------KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTI-RIDGQDVLKQPQKL 70 (211)
T ss_pred CEEEEEEEEECC--------EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEE-EECCCccccchHHH
Confidence 468999999953 268999 9999999 999999999999999999999999999986 6654
Q ss_pred --eEEEEcCCCCCCC-CCHHHHhccCCc---CCH----HHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHH
Q 000720 660 --KKAYVPQSSWIQT-GTIRENILFGKD---MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRI 729 (1333)
Q Consensus 660 --~iayv~Q~~~i~~-~Tv~enI~~g~~---~~~----~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv 729 (1333)
.++|++|++.++. .|++||+.+... .+. +..++.++.+++.+. ....+.+||||||||+
T Consensus 71 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv 139 (211)
T cd03264 71 RRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDR-----------AKKKIGSLSGGMRRRV 139 (211)
T ss_pred HhheEEecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHH-----------HhCchhhCCHHHHHHH
Confidence 4799999998765 599999986422 111 122333444443221 2356789999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhh-cCCEEEEEeCCeEEEcc
Q 000720 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSG 801 (1333)
Q Consensus 730 ~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~-~aD~i~vl~~G~i~~~g 801 (1333)
+||||++++|+++||||||++||+.+.+.+.+. ++...+++|+|++||+++.+. .||++++|++|++++.|
T Consensus 140 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~-l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 140 GIAQALVGDPSILIVDEPTAGLDPEERIRFRNL-LSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH-HHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 999999999999999999999999998887764 455555699999999999986 49999999999998764
No 203
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.3e-34 Score=325.43 Aligned_cols=205 Identities=22% Similarity=0.356 Sum_probs=165.6
Q ss_pred CCccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcC-----CCCcEEEECC-
Q 000720 587 SDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR-----ISGAAIKVHG- 659 (1333)
Q Consensus 587 ~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~-----~~G~~i~~~g- 659 (1333)
++..|+++|++++|+. .+.++| ||+|++||+++|+||||||||||+++|+|+.+| ++|++ .++|
T Consensus 16 ~~~~l~~~nl~~~~~~--------~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I-~~~g~ 86 (267)
T PRK14235 16 TEIKMRARDVSVFYGE--------KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKI-TLDGE 86 (267)
T ss_pred CCceEEEEeEEEEECC--------EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEE-EECCE
Confidence 3457999999999963 358999 999999999999999999999999999999875 78876 5443
Q ss_pred --------------eEEEEcCCCCCCCCCHHHHhccCCcC-----CH----HHHHHHHHHcccchHHHhhcCCCccccCC
Q 000720 660 --------------KKAYVPQSSWIQTGTIRENILFGKDM-----RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGE 716 (1333)
Q Consensus 660 --------------~iayv~Q~~~i~~~Tv~enI~~g~~~-----~~----~~~~~v~~~~~l~~d~~~~~~g~~t~ig~ 716 (1333)
.++|++|++.+++.|++||+.++... .. ++.++.++.+++.+++. +..++
T Consensus 87 ~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~ 159 (267)
T PRK14235 87 DIYDPRLDVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVK-------DRLHE 159 (267)
T ss_pred ECcccccchHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhh-------HHhhC
Confidence 37999999988778999999875321 11 12233344444432211 12346
Q ss_pred CCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeCC
Q 000720 717 RGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDG 795 (1333)
Q Consensus 717 ~g~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~G 795 (1333)
.+.+||||||||++||||++.+|+++||||||++||+...+.+.+ +++.+.+++|+|++||+++.+.. ||++++|++|
T Consensus 160 ~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~-~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G 238 (267)
T PRK14235 160 PGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEE-LIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLG 238 (267)
T ss_pred CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHH-HHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECC
Confidence 788999999999999999999999999999999999999887765 45555557899999999999854 9999999999
Q ss_pred eEEEccChHHHHh
Q 000720 796 KIEQSGKYEDLIA 808 (1333)
Q Consensus 796 ~i~~~g~~~~l~~ 808 (1333)
++++.|+.+++..
T Consensus 239 ~i~~~g~~~~~~~ 251 (267)
T PRK14235 239 NLVEVGDTEKMFT 251 (267)
T ss_pred EEEEeCCHHHHHh
Confidence 9999999988865
No 204
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.8e-34 Score=329.50 Aligned_cols=205 Identities=26% Similarity=0.372 Sum_probs=163.0
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC---------
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g--------- 659 (1333)
.++++|++++|+.... ...+.+++ ||++++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 2 ~l~~~~l~~~~~~~~~---~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i-~~~g~~i~~~~~~ 77 (280)
T PRK13649 2 GINLQNVSYTYQAGTP---FEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSV-RVDDTLITSTSKN 77 (280)
T ss_pred eEEEEEEEEEcCCCCc---cccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEE-EECCEEccccccc
Confidence 3789999999974300 01368999 99999999999999999999999999999999999986 5544
Q ss_pred --------eEEEEcCCC--CCCCCCHHHHhccCCc---CCHHH----HHHHHHHcccchHHHhhcCCCccccCCCCCCCC
Q 000720 660 --------KKAYVPQSS--WIQTGTIRENILFGKD---MRQSF----YEEVLEGCALNQDIEMWADGDLSVVGERGINLS 722 (1333)
Q Consensus 660 --------~iayv~Q~~--~i~~~Tv~enI~~g~~---~~~~~----~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LS 722 (1333)
.++|++|++ .+++.|++||+.++.. .+.+. .+++++..++.. .....++.+||
T Consensus 78 ~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LS 147 (280)
T PRK13649 78 KDIKQIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISE----------SLFEKNPFELS 147 (280)
T ss_pred cCHHHHHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCh----------hhhhCCcccCC
Confidence 379999997 5677899999987532 11211 122223322221 12346788999
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhh-cCCEEEEEeCCeEEEcc
Q 000720 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSG 801 (1333)
Q Consensus 723 GGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~-~aD~i~vl~~G~i~~~g 801 (1333)
||||||++||||++.+|+++||||||++||+.+.+.+.+.+.+...+++|||++||+++.+. .||++++|++|++++.|
T Consensus 148 gG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g 227 (280)
T PRK13649 148 GGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSG 227 (280)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999999988777654433345799999999999885 49999999999999999
Q ss_pred ChHHHHh
Q 000720 802 KYEDLIA 808 (1333)
Q Consensus 802 ~~~~l~~ 808 (1333)
+++++..
T Consensus 228 ~~~~~~~ 234 (280)
T PRK13649 228 KPKDIFQ 234 (280)
T ss_pred CHHHHhc
Confidence 9988765
No 205
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=3.6e-34 Score=323.41 Aligned_cols=199 Identities=28% Similarity=0.365 Sum_probs=160.9
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC---------
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g--------- 659 (1333)
.++++|++++|+. .+.+++ ||++++||+++|+||||||||||+++|+|+.+|++|++ .++|
T Consensus 3 ~l~~~~l~~~~~~--------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~g~~~~~~~~~ 73 (250)
T PRK11264 3 AIEVKNLVKKFHG--------QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTI-RVGDITIDTARSL 73 (250)
T ss_pred cEEEeceEEEECC--------eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEE-EECCEEccccccc
Confidence 3789999999963 258999 99999999999999999999999999999999999986 4332
Q ss_pred ------------eEEEEcCCCCCC-CCCHHHHhccCCc----CCHH----HHHHHHHHcccchHHHhhcCCCccccCCCC
Q 000720 660 ------------KKAYVPQSSWIQ-TGTIRENILFGKD----MRQS----FYEEVLEGCALNQDIEMWADGDLSVVGERG 718 (1333)
Q Consensus 660 ------------~iayv~Q~~~i~-~~Tv~enI~~g~~----~~~~----~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g 718 (1333)
.++|++|++.++ ..|++||+.++.. .... +..+.++..++. ...+.++
T Consensus 74 ~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-----------~~~~~~~ 142 (250)
T PRK11264 74 SQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLA-----------GKETSYP 142 (250)
T ss_pred cchhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc-----------chhhCCh
Confidence 479999998766 4799999986421 1111 122222222221 2234678
Q ss_pred CCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeCCeE
Q 000720 719 INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKI 797 (1333)
Q Consensus 719 ~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i 797 (1333)
.+||||||||++||||++.+|+++||||||++||+.+.+.+.+.+.+...+++|+|++||+++.+.. ||++++|++|++
T Consensus 143 ~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i 222 (250)
T PRK11264 143 RRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRI 222 (250)
T ss_pred hhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEE
Confidence 8999999999999999999999999999999999999887776443333458999999999999865 999999999999
Q ss_pred EEccChHHHHh
Q 000720 798 EQSGKYEDLIA 808 (1333)
Q Consensus 798 ~~~g~~~~l~~ 808 (1333)
++.|+.+++.+
T Consensus 223 ~~~~~~~~~~~ 233 (250)
T PRK11264 223 VEQGPAKALFA 233 (250)
T ss_pred EEeCCHHHHhc
Confidence 99999988865
No 206
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=4.2e-34 Score=323.97 Aligned_cols=202 Identities=25% Similarity=0.359 Sum_probs=162.8
Q ss_pred CccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC-------
Q 000720 588 DVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG------- 659 (1333)
Q Consensus 588 ~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g------- 659 (1333)
++.++++|+++.|+. ...+++ ||++++||+++|+|+||||||||+++|+|+++|++|++ .++|
T Consensus 3 ~~~l~~~~l~~~~~~--------~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i-~~~g~~~~~~~ 73 (257)
T PRK10619 3 ENKLNVIDLHKRYGE--------HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSI-VVNGQTINLVR 73 (257)
T ss_pred CccEEEeeeEEEECC--------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEE-EECCEEccccc
Confidence 346999999999963 358999 99999999999999999999999999999999999976 4443
Q ss_pred -------------------eEEEEcCCCCCCC-CCHHHHhccCC----cCCH----HHHHHHHHHcccchHHHhhcCCCc
Q 000720 660 -------------------KKAYVPQSSWIQT-GTIRENILFGK----DMRQ----SFYEEVLEGCALNQDIEMWADGDL 711 (1333)
Q Consensus 660 -------------------~iayv~Q~~~i~~-~Tv~enI~~g~----~~~~----~~~~~v~~~~~l~~d~~~~~~g~~ 711 (1333)
+++|+||++.++. .|++||+.++. ..+. ++..+.++..++...
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~--------- 144 (257)
T PRK10619 74 DKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDER--------- 144 (257)
T ss_pred ccccccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChh---------
Confidence 4799999998765 69999997642 1111 112222332222211
Q ss_pred cccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEE
Q 000720 712 SVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVL 790 (1333)
Q Consensus 712 t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~ 790 (1333)
..+..+.+||||||||++||||++++|+++||||||++||+.+.+.+.+.+.+...+++|+|++||+++++.. ||+|+
T Consensus 145 -~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~ 223 (257)
T PRK10619 145 -AQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVI 223 (257)
T ss_pred -hhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEE
Confidence 0145678999999999999999999999999999999999999888876443333458999999999999875 99999
Q ss_pred EEeCCeEEEccChHHHHh
Q 000720 791 VMKDGKIEQSGKYEDLIA 808 (1333)
Q Consensus 791 vl~~G~i~~~g~~~~l~~ 808 (1333)
+|++|++++.|+++++.+
T Consensus 224 ~l~~G~i~~~~~~~~~~~ 241 (257)
T PRK10619 224 FLHQGKIEEEGAPEQLFG 241 (257)
T ss_pred EEECCEEEEeCCHHHhhh
Confidence 999999999999988765
No 207
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.1e-34 Score=324.16 Aligned_cols=204 Identities=24% Similarity=0.351 Sum_probs=164.0
Q ss_pred ccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcC-----CCCcEEEECC---
Q 000720 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR-----ISGAAIKVHG--- 659 (1333)
Q Consensus 589 ~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~-----~~G~~i~~~g--- 659 (1333)
..++++|+++.|+. .+.+++ ||++++||+++|+|+||||||||+++|+|+.+| ++|++ .++|
T Consensus 11 ~~l~~~~l~~~~~~--------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i-~~~g~~i 81 (258)
T PRK14268 11 PQIKVENLNLWYGE--------KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKV-SIEGEDI 81 (258)
T ss_pred eeEEEeeeEEEeCC--------eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEE-EECCEEc
Confidence 36999999999853 358999 999999999999999999999999999999875 78975 4432
Q ss_pred ------------eEEEEcCCCCCCCCCHHHHhccCCc---CCHH----HHHHHHHHcccchHHHhhcCCCccccCCCCCC
Q 000720 660 ------------KKAYVPQSSWIQTGTIRENILFGKD---MRQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1333)
Q Consensus 660 ------------~iayv~Q~~~i~~~Tv~enI~~g~~---~~~~----~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~ 720 (1333)
.++|++|++.+++.|++||+.++.. .... +.+++++.+++..++ ....++++.+
T Consensus 82 ~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~ 154 (258)
T PRK14268 82 YEPDVDVVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDET-------SDRLKSPALS 154 (258)
T ss_pred ccccchHHHHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcch-------hhhhcCChhh
Confidence 3799999998877999999987532 1111 122233333332111 1233567889
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhh-cCCEEEEEeCCeEEE
Q 000720 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQ 799 (1333)
Q Consensus 721 LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~-~aD~i~vl~~G~i~~ 799 (1333)
||||||||++||||++.+|+++||||||++||+.++..+.+ +++.+.+++|+|++||+++.+. .||+|++|++|++++
T Consensus 155 LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~-~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~ 233 (258)
T PRK14268 155 LSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIED-LIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIE 233 (258)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHH-HHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999887765 4444455799999999999885 499999999999999
Q ss_pred ccChHHHHhh
Q 000720 800 SGKYEDLIAD 809 (1333)
Q Consensus 800 ~g~~~~l~~~ 809 (1333)
.|+++++.++
T Consensus 234 ~~~~~~~~~~ 243 (258)
T PRK14268 234 FGQTRQIFHN 243 (258)
T ss_pred eCCHHHHhcC
Confidence 9999988653
No 208
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.9e-34 Score=323.81 Aligned_cols=202 Identities=22% Similarity=0.362 Sum_probs=162.7
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCc--C---CCCcEEEECC----
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP--R---ISGAAIKVHG---- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~--~---~~G~~i~~~g---- 659 (1333)
.++++|+++.|+. .+.+++ ||+|++||+++|+||||||||||+++|+|+++ | ++|++ .++|
T Consensus 12 ~l~i~~l~~~~~~--------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i-~~~g~~~~ 82 (259)
T PRK14274 12 VYQINGMNLWYGQ--------HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEM-NYNGSNIL 82 (259)
T ss_pred eEEEeeEEEEECC--------eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEE-EECCEEcc
Confidence 5899999999963 358999 99999999999999999999999999999987 3 57875 4433
Q ss_pred -----------eEEEEcCCCCCCCCCHHHHhccCCcC----CHHH----HHHHHHHcccchHHHhhcCCCccccCCCCCC
Q 000720 660 -----------KKAYVPQSSWIQTGTIRENILFGKDM----RQSF----YEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1333)
Q Consensus 660 -----------~iayv~Q~~~i~~~Tv~enI~~g~~~----~~~~----~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~ 720 (1333)
.++|++|++.+++.|++||+.++... .+.. .+++++..++.+.+ .+..+.++.+
T Consensus 83 ~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~l~~~~~~ 155 (259)
T PRK14274 83 KGKVDLVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEV-------KDRLHTQALS 155 (259)
T ss_pred ccccCHHHHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhh-------hhhhhCCccc
Confidence 37999999988878999999876422 1111 12223333332211 1234567889
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhh-cCCEEEEEeCCeEEE
Q 000720 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQ 799 (1333)
Q Consensus 721 LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~-~aD~i~vl~~G~i~~ 799 (1333)
||||||||++||||++++|+++||||||++||+++...+.+ +++...+++|+|++||+++.+. .||++++|++|++++
T Consensus 156 LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~ 234 (259)
T PRK14274 156 LSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEE-LILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVE 234 (259)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH-HHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999877765 5555556789999999999976 499999999999999
Q ss_pred ccChHHHHh
Q 000720 800 SGKYEDLIA 808 (1333)
Q Consensus 800 ~g~~~~l~~ 808 (1333)
.|+++++.+
T Consensus 235 ~g~~~~~~~ 243 (259)
T PRK14274 235 CNDTNKMFS 243 (259)
T ss_pred ECCHHHHhh
Confidence 999999865
No 209
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4e-34 Score=323.21 Aligned_cols=202 Identities=24% Similarity=0.352 Sum_probs=162.9
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCc-----CCCCcEEEECC----
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP-----RISGAAIKVHG---- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~-----~~~G~~i~~~g---- 659 (1333)
.++++|++|+|+. .+.+++ ||++++||+++|+|+||||||||+++|+|+++ |++|++ .++|
T Consensus 4 ~l~~~~l~~~~~~--------~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v-~i~g~~~~ 74 (251)
T PRK14251 4 IISAKDVHLSYGN--------YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEI-KFEGQNIY 74 (251)
T ss_pred eEEEEeeEEEECC--------eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEE-EECCEEcc
Confidence 4889999999963 358999 99999999999999999999999999999986 478875 4433
Q ss_pred -----------eEEEEcCCCCCCCCCHHHHhccCCcC----CH----HHHHHHHHHcccchHHHhhcCCCccccCCCCCC
Q 000720 660 -----------KKAYVPQSSWIQTGTIRENILFGKDM----RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1333)
Q Consensus 660 -----------~iayv~Q~~~i~~~Tv~enI~~g~~~----~~----~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~ 720 (1333)
.++|++|++.+++.|++||+.++... ++ .+.+++++..++..+. ....+.++.+
T Consensus 75 ~~~~~~~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~ 147 (251)
T PRK14251 75 GSKMDLVELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKET-------KDNLDRNAQA 147 (251)
T ss_pred cccchHHHhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcch-------HHHhccChhh
Confidence 37999999988889999999875321 11 1223333433332111 1123467889
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeCCeEEE
Q 000720 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQ 799 (1333)
Q Consensus 721 LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~ 799 (1333)
||||||||++||||++++|+++||||||++||+.+.+.+.+. ++...+++|+|++||+++++.. ||+|++|++|++++
T Consensus 148 LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~-l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~ 226 (251)
T PRK14251 148 FSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEET-LMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIE 226 (251)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHH-HHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEE
Confidence 999999999999999999999999999999999998877654 4444567899999999999765 99999999999999
Q ss_pred ccChHHHHh
Q 000720 800 SGKYEDLIA 808 (1333)
Q Consensus 800 ~g~~~~l~~ 808 (1333)
.|+.+++..
T Consensus 227 ~~~~~~~~~ 235 (251)
T PRK14251 227 AGPTEEMFI 235 (251)
T ss_pred eCCHHHHHh
Confidence 999988865
No 210
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.4e-34 Score=324.17 Aligned_cols=204 Identities=23% Similarity=0.351 Sum_probs=164.3
Q ss_pred CccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCc-----CCCCcEEEECC--
Q 000720 588 DVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP-----RISGAAIKVHG-- 659 (1333)
Q Consensus 588 ~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~-----~~~G~~i~~~g-- 659 (1333)
+..++++|++++|+. ...+++ ||+|++||+++|+||||||||||+++|+|+++ |++|++ .++|
T Consensus 11 ~~~l~i~nl~~~~~~--------~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v-~~~g~~ 81 (269)
T PRK14259 11 NIIISLQNVTISYGT--------FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRV-LFDGTD 81 (269)
T ss_pred CceEEEEeEEEEECC--------EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEE-EECCEE
Confidence 346999999999964 358999 99999999999999999999999999999987 588976 4443
Q ss_pred -------------eEEEEcCCCCCCCCCHHHHhccCCcCC---H---HHHHHHHHHcccchHHHhhcCCCccccCCCCCC
Q 000720 660 -------------KKAYVPQSSWIQTGTIRENILFGKDMR---Q---SFYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1333)
Q Consensus 660 -------------~iayv~Q~~~i~~~Tv~enI~~g~~~~---~---~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~ 720 (1333)
+++|++|++.++..|++||+.++.... . ++.+++++.+++...+ .+..+.++.+
T Consensus 82 i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~ 154 (269)
T PRK14259 82 LYDPRVDPVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDEC-------KDKLNESGYS 154 (269)
T ss_pred cccccCCHHHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchh-------hhhhCCCccc
Confidence 479999999887789999999864321 1 1122233333322111 1234567889
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhh-cCCEEEEEeC-----
Q 000720 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMKD----- 794 (1333)
Q Consensus 721 LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~-~aD~i~vl~~----- 794 (1333)
||||||||++||||++.+|+++||||||++||+.+.+++.+ +++...+++|+|++||+++.+. .||++++|++
T Consensus 155 LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~-~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~ 233 (269)
T PRK14259 155 LSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEE-TMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEG 233 (269)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHH-HHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEecccccc
Confidence 99999999999999999999999999999999999888766 4455556789999999999885 4999999996
Q ss_pred ------CeEEEccChHHHHh
Q 000720 795 ------GKIEQSGKYEDLIA 808 (1333)
Q Consensus 795 ------G~i~~~g~~~~l~~ 808 (1333)
|++++.|+++++.+
T Consensus 234 ~~~g~~g~~~~~~~~~~~~~ 253 (269)
T PRK14259 234 GSGGKVGYLVEFNETKKIFN 253 (269)
T ss_pred ccccccceEEEeCCHHHHHh
Confidence 67899999999875
No 211
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=3.5e-34 Score=317.39 Aligned_cols=192 Identities=30% Similarity=0.350 Sum_probs=153.4
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC----------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g---------- 659 (1333)
++++|++++|+... ...+.+++ ||++++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 2 l~~~~v~~~~~~~~----~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i-~~~g~~~~~~~~~~ 76 (221)
T TIGR02211 2 LKCENLGKRYQEGK----LDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEV-LFNGQSLSKLSSNE 76 (221)
T ss_pred EEEEeeeEEccCCC----cceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEE-EECCEEhhhcCHhH
Confidence 67899999996420 12468999 99999999999999999999999999999999999986 5443
Q ss_pred -------eEEEEcCCCCCC-CCCHHHHhccCCc---CCHH----HHHHHHHHcccchHHHhhcCCCccccCCCCCCCChH
Q 000720 660 -------KKAYVPQSSWIQ-TGTIRENILFGKD---MRQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGG 724 (1333)
Q Consensus 660 -------~iayv~Q~~~i~-~~Tv~enI~~g~~---~~~~----~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGG 724 (1333)
.++|++|++.++ +.|++||+.++.. .+.. +..+.++.+++. ...+..+.+||||
T Consensus 77 ~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G 145 (221)
T TIGR02211 77 RAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLE-----------HRINHRPSELSGG 145 (221)
T ss_pred HHHHHHhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh-----------hhhhCChhhCCHH
Confidence 489999998776 5699999987422 2211 122233333222 2334667899999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEecCchhhhhcCCEEEEEeCCeEE
Q 000720 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDAADLVLVMKDGKIE 798 (1333)
Q Consensus 725 QkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~-~~~TvIlvtH~~~~l~~aD~i~vl~~G~i~ 798 (1333)
||||++||||++.+|+++||||||++||+++.+.+.+.+.+... .++|+|++||+++++..+|++++|++|+++
T Consensus 146 ~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 146 ERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred HHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence 99999999999999999999999999999998887764433333 378999999999998889999999999975
No 212
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.4e-34 Score=321.44 Aligned_cols=202 Identities=23% Similarity=0.343 Sum_probs=164.9
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcC-----CCCcEEEECC----
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR-----ISGAAIKVHG---- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~-----~~G~~i~~~g---- 659 (1333)
-++++|+++.|+. .+.+++ ||++++||+++|+|+||||||||+++|+|+.+| ++|++ .++|
T Consensus 4 ~l~~~~l~~~~~~--------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i-~~~g~~i~ 74 (251)
T PRK14270 4 KMESKNLNLWYGE--------KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEV-LLDGKNIY 74 (251)
T ss_pred EEEEEEeEEEECC--------eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEE-EECCEecc
Confidence 4789999999963 358999 999999999999999999999999999999875 78875 4433
Q ss_pred -----------eEEEEcCCCCCCCCCHHHHhccCCcC----CH----HHHHHHHHHcccchHHHhhcCCCccccCCCCCC
Q 000720 660 -----------KKAYVPQSSWIQTGTIRENILFGKDM----RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1333)
Q Consensus 660 -----------~iayv~Q~~~i~~~Tv~enI~~g~~~----~~----~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~ 720 (1333)
.++|++|++.++..|++||+.++... .. ++..++++.+++.+++. ...+.++.+
T Consensus 75 ~~~~~~~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~ 147 (251)
T PRK14270 75 DKDVDVVELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVK-------DDLKKSALK 147 (251)
T ss_pred cccccHHHHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhh-------hHhhCCccc
Confidence 37999999988889999999876321 11 12234455554432222 123467889
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeCCeEEE
Q 000720 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQ 799 (1333)
Q Consensus 721 LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~ 799 (1333)
||||||||++||||++.+|+++||||||++||+.+...+.+ +++...+++|+|++||+++.+.. ||++++|++|++++
T Consensus 148 LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~-~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~ 226 (251)
T PRK14270 148 LSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIED-LMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIE 226 (251)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEE
Confidence 99999999999999999999999999999999999888766 45555557899999999998765 99999999999999
Q ss_pred ccChHHHHh
Q 000720 800 SGKYEDLIA 808 (1333)
Q Consensus 800 ~g~~~~l~~ 808 (1333)
.|+.+++..
T Consensus 227 ~~~~~~~~~ 235 (251)
T PRK14270 227 FNKTEKIFL 235 (251)
T ss_pred eCCHHHHhc
Confidence 999998865
No 213
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.4e-34 Score=322.35 Aligned_cols=203 Identities=23% Similarity=0.371 Sum_probs=162.7
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCc--C---CCCcEEEECC----
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP--R---ISGAAIKVHG---- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~--~---~~G~~i~~~g---- 659 (1333)
.++++|++++|+. .+.+++ ||++++||+++|+||||||||||+++|+|+.+ | ++|++ .++|
T Consensus 5 ~l~~~~l~~~~~~--------~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i-~~~g~~~~ 75 (252)
T PRK14239 5 ILQVSDLSVYYNK--------KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSI-VYNGHNIY 75 (252)
T ss_pred eEEEEeeEEEECC--------eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceE-EECCEECc
Confidence 5899999999963 358999 99999999999999999999999999999853 5 47875 4443
Q ss_pred -----------eEEEEcCCCCCCCCCHHHHhccCCcC----CHH----HHHHHHHHcccchHHHhhcCCCccccCCCCCC
Q 000720 660 -----------KKAYVPQSSWIQTGTIRENILFGKDM----RQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1333)
Q Consensus 660 -----------~iayv~Q~~~i~~~Tv~enI~~g~~~----~~~----~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~ 720 (1333)
.++|++|++.+++.|++||+.++... ++. ...+.++.+++...+. +..++++.+
T Consensus 76 ~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~ 148 (252)
T PRK14239 76 SPRTDTVDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVK-------DRLHDSALG 148 (252)
T ss_pred CcccchHhhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHH-------HHHhcCccc
Confidence 48999999998889999999875321 111 1122333333322111 234567889
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhh-cCCEEEEEeCCeEEE
Q 000720 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQ 799 (1333)
Q Consensus 721 LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~-~aD~i~vl~~G~i~~ 799 (1333)
||||||||++||||++.+|+++||||||++||+.+.+.+.+ +++...+++|+|++||+++.+. .||+|++|++|++++
T Consensus 149 LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~ 227 (252)
T PRK14239 149 LSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEE-TLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIE 227 (252)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHH-HHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999888876 4444455789999999999875 599999999999999
Q ss_pred ccChHHHHhh
Q 000720 800 SGKYEDLIAD 809 (1333)
Q Consensus 800 ~g~~~~l~~~ 809 (1333)
.|+.+++.++
T Consensus 228 ~g~~~~~~~~ 237 (252)
T PRK14239 228 YNDTKQMFMN 237 (252)
T ss_pred eCCHHHHHhC
Confidence 9999998753
No 214
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.2e-34 Score=329.23 Aligned_cols=204 Identities=25% Similarity=0.336 Sum_probs=161.9
Q ss_pred ccEEEeeeEEEcCCcccccCC--CcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC------
Q 000720 589 VAIDIEAGEYAWDAREENFKK--PTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG------ 659 (1333)
Q Consensus 589 ~~I~i~~~~fsw~~~~~~~~~--~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g------ 659 (1333)
..|+++|++++|+.. . ..+++++ ||++++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 5 ~~l~i~nl~~~~~~~-----~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i-~~~g~~i~~~ 78 (289)
T PRK13645 5 KDIILDNVSYTYAKK-----TPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQT-IVGDYAIPAN 78 (289)
T ss_pred ceEEEEEEEEEeCCC-----CccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE-EECCEEcccc
Confidence 458999999999643 1 1358999 99999999999999999999999999999999999986 4433
Q ss_pred ------------eEEEEcCCCC--CCCCCHHHHhccCCcC---CHHH-H---HHHHHHcccchHHHhhcCCCccccCCCC
Q 000720 660 ------------KKAYVPQSSW--IQTGTIRENILFGKDM---RQSF-Y---EEVLEGCALNQDIEMWADGDLSVVGERG 718 (1333)
Q Consensus 660 ------------~iayv~Q~~~--i~~~Tv~enI~~g~~~---~~~~-~---~~v~~~~~l~~d~~~~~~g~~t~ig~~g 718 (1333)
.++|++|+|. +++.|++||+.++... .... . .+.++..++. ....++.+
T Consensus 79 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~----------~~~~~~~~ 148 (289)
T PRK13645 79 LKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLP----------EDYVKRSP 148 (289)
T ss_pred ccccccHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCC----------hhHhcCCh
Confidence 4799999984 5567999999886421 1111 1 1122222221 11234678
Q ss_pred CCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEecCchhhhh-cCCEEEEEeCCe
Q 000720 719 INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLD-AADLVLVMKDGK 796 (1333)
Q Consensus 719 ~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~-~~~TvIlvtH~~~~l~-~aD~i~vl~~G~ 796 (1333)
.+||||||||++||||++.+|+++||||||++||+.+++.+.+.+.+... .++|||++||+++.+. .||++++|++|+
T Consensus 149 ~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~ 228 (289)
T PRK13645 149 FELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGK 228 (289)
T ss_pred hhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCE
Confidence 89999999999999999999999999999999999998877664433333 3789999999999875 599999999999
Q ss_pred EEEccChHHHHh
Q 000720 797 IEQSGKYEDLIA 808 (1333)
Q Consensus 797 i~~~g~~~~l~~ 808 (1333)
+++.|+++++.+
T Consensus 229 i~~~g~~~~~~~ 240 (289)
T PRK13645 229 VISIGSPFEIFS 240 (289)
T ss_pred EEEeCCHHHHhc
Confidence 999999888764
No 215
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.7e-34 Score=323.20 Aligned_cols=198 Identities=24% Similarity=0.358 Sum_probs=161.3
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC----------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g---------- 659 (1333)
++++|++++|++ .+.+++ ||++++||+++|+|+||||||||+++|+|+++|++|++ .++|
T Consensus 3 l~~~~l~~~~~~--------~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i-~~~g~~~~~~~~~~ 73 (255)
T PRK11231 3 LRTENLTVGYGT--------KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTV-FLGDKPISMLSSRQ 73 (255)
T ss_pred EEEEeEEEEECC--------EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEE-EECCEEhHHCCHHH
Confidence 789999999963 368999 99999999999999999999999999999999999986 6554
Q ss_pred ---eEEEEcCCCCCCC-CCHHHHhccCCc-C-------CH---HHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChH
Q 000720 660 ---KKAYVPQSSWIQT-GTIRENILFGKD-M-------RQ---SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGG 724 (1333)
Q Consensus 660 ---~iayv~Q~~~i~~-~Tv~enI~~g~~-~-------~~---~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGG 724 (1333)
.++|++|++.++. .|+.||+.++.. . .+ ++.++.++.+++. ...+.++.+||||
T Consensus 74 ~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G 142 (255)
T PRK11231 74 LARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRIN-----------HLADRRLTDLSGG 142 (255)
T ss_pred HhhheEEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCH-----------HHHcCCcccCCHH
Confidence 3799999987665 499999988631 1 11 1222233333332 1234678899999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhh-cCCEEEEEeCCeEEEccCh
Q 000720 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKY 803 (1333)
Q Consensus 725 QkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~-~aD~i~vl~~G~i~~~g~~ 803 (1333)
||||++||||++.+|+++||||||++||+.+.+.+.+.+.+...+++|+|++||+++.+. .||++++|++|+++..|++
T Consensus 143 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~ 222 (255)
T PRK11231 143 QRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTP 222 (255)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCH
Confidence 999999999999999999999999999999988777654333345899999999999876 5999999999999999999
Q ss_pred HHHHh
Q 000720 804 EDLIA 808 (1333)
Q Consensus 804 ~~l~~ 808 (1333)
+++..
T Consensus 223 ~~~~~ 227 (255)
T PRK11231 223 EEVMT 227 (255)
T ss_pred HHhcC
Confidence 88764
No 216
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.7e-34 Score=314.06 Aligned_cols=189 Identities=26% Similarity=0.389 Sum_probs=152.1
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC----------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g---------- 659 (1333)
|+++|++++|+.. . .+ ||++++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 1 i~~~~l~~~~~~~--------~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i-~~~g~~~~~~~~~~ 69 (211)
T cd03298 1 VRLDKIRFSYGEQ--------P--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRV-LINGVDVTAAPPAD 69 (211)
T ss_pred CEEEeEEEEeCCE--------e--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE-EECCEEcCcCCHhH
Confidence 4689999998632 1 27 99999999999999999999999999999999999986 6655
Q ss_pred -eEEEEcCCCCCCC-CCHHHHhccCCcC----C---HHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHH
Q 000720 660 -KKAYVPQSSWIQT-GTIRENILFGKDM----R---QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQ 730 (1333)
Q Consensus 660 -~iayv~Q~~~i~~-~Tv~enI~~g~~~----~---~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~ 730 (1333)
.++|++|++.++. .|++||+.++... . +++.+++++.+++.+ ..+..+.+||||||||++
T Consensus 70 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrv~ 138 (211)
T cd03298 70 RPVSMLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAG-----------LEKRLPGELSGGERQRVA 138 (211)
T ss_pred ccEEEEecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHH-----------HHhCCcccCCHHHHHHHH
Confidence 3799999998765 5999999876421 1 122333444443322 223566799999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEecCchhhhhc-CCEEEEEeCCeEEEcc
Q 000720 731 LARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSG 801 (1333)
Q Consensus 731 LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~-~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~~g 801 (1333)
||||++.+|+++||||||++||+++.+.+.+.+.+... +++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 139 ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 139 LARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 99999999999999999999999998877765443333 37899999999999865 9999999999998654
No 217
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4e-34 Score=338.82 Aligned_cols=210 Identities=24% Similarity=0.362 Sum_probs=165.0
Q ss_pred cEEEeeeEEEcCCcccc----------------cCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCC
Q 000720 590 AIDIEAGEYAWDAREEN----------------FKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISG 652 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~----------------~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G 652 (1333)
.|+++|++..+..+... .....+.+++ ||++++||+++|+||||||||||+++|+|+++|++|
T Consensus 4 ~i~~~~~~k~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG 83 (400)
T PRK10070 4 KLEIKNLYKIFGEHPQRAFKYIEQGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRG 83 (400)
T ss_pred EEEEeeeEEecCCChHHHHHHHhccccHHHHHhhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCC
Confidence 47777777776543110 0012346899 999999999999999999999999999999999999
Q ss_pred cEEEECC-----------------eEEEEcCCCCCC-CCCHHHHhccCCcC---CH----HHHHHHHHHcccchHHHhhc
Q 000720 653 AAIKVHG-----------------KKAYVPQSSWIQ-TGTIRENILFGKDM---RQ----SFYEEVLEGCALNQDIEMWA 707 (1333)
Q Consensus 653 ~~i~~~g-----------------~iayv~Q~~~i~-~~Tv~enI~~g~~~---~~----~~~~~v~~~~~l~~d~~~~~ 707 (1333)
++ .++| +++|++|++.++ +.|++||+.++... .. ++..+.++.+++.+
T Consensus 84 ~I-~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~------ 156 (400)
T PRK10070 84 QV-LIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLEN------ 156 (400)
T ss_pred EE-EECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCh------
Confidence 86 5543 489999998876 46999999986432 21 12233344444322
Q ss_pred CCCccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEecCchhhhh-c
Q 000720 708 DGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLD-A 785 (1333)
Q Consensus 708 ~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~-~~~TvIlvtH~~~~l~-~ 785 (1333)
.....+.+||||||||++||||++.+|+++||||||++||+.+++.+.+.+.+... .++|+|++||+++++. .
T Consensus 157 -----~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~ 231 (400)
T PRK10070 157 -----YAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRI 231 (400)
T ss_pred -----hhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHh
Confidence 23466789999999999999999999999999999999999998888765544333 4799999999999875 5
Q ss_pred CCEEEEEeCCeEEEccChHHHHhhcc
Q 000720 786 ADLVLVMKDGKIEQSGKYEDLIADQN 811 (1333)
Q Consensus 786 aD~i~vl~~G~i~~~g~~~~l~~~~~ 811 (1333)
||+|++|++|++++.|+++++..++.
T Consensus 232 ~Dri~vL~~G~i~~~g~~~~l~~~~~ 257 (400)
T PRK10070 232 GDRIAIMQNGEVVQVGTPDEILNNPA 257 (400)
T ss_pred CCEEEEEECCEEEecCCHHHHHhCcc
Confidence 99999999999999999999876443
No 218
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.9e-34 Score=322.17 Aligned_cols=202 Identities=26% Similarity=0.378 Sum_probs=163.0
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCC---CcC--CCCcEEEECC----
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGE---IPR--ISGAAIKVHG---- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~---~~~--~~G~~i~~~g---- 659 (1333)
.++++|+++.|+. ...+++ ||++++||+++|+||||||||||+++|+|+ .+| ++|++ .++|
T Consensus 3 ~l~~~~~~~~~~~--------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i-~~~g~~~~ 73 (250)
T PRK14245 3 KIDARDVNFWYGD--------FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEI-RIDGRNIY 73 (250)
T ss_pred EEEEEEEEEEECC--------EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEE-EECCEecc
Confidence 5889999999963 358999 999999999999999999999999999996 454 47875 4433
Q ss_pred -----------eEEEEcCCCCCCCCCHHHHhccCCcC----CH----HHHHHHHHHcccchHHHhhcCCCccccCCCCCC
Q 000720 660 -----------KKAYVPQSSWIQTGTIRENILFGKDM----RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1333)
Q Consensus 660 -----------~iayv~Q~~~i~~~Tv~enI~~g~~~----~~----~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~ 720 (1333)
.++|+||++.+++.|++||+.++... +. ++.++.++.+++.++++ +..++++.+
T Consensus 74 ~~~~~~~~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~ 146 (250)
T PRK14245 74 DKGVQVDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVK-------DKLKESAFA 146 (250)
T ss_pred cccccHHHHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchh-------hhhhCCccc
Confidence 47999999988778999999875321 11 12233444444432221 234567889
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhh-cCCEEEEEeCCeEEE
Q 000720 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQ 799 (1333)
Q Consensus 721 LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~-~aD~i~vl~~G~i~~ 799 (1333)
||||||||++||||++.+|+++||||||++||+.+++.+.+. ++.+.+++|||++||+++.+. .||++++|++|++++
T Consensus 147 LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~-l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~ 225 (250)
T PRK14245 147 LSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEEL-IHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVE 225 (250)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHH-HHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999998877664 444456799999999999875 599999999999999
Q ss_pred ccChHHHHh
Q 000720 800 SGKYEDLIA 808 (1333)
Q Consensus 800 ~g~~~~l~~ 808 (1333)
.|+++++.+
T Consensus 226 ~~~~~~~~~ 234 (250)
T PRK14245 226 YDDTKKIFT 234 (250)
T ss_pred ECCHHHHhc
Confidence 999999875
No 219
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.2e-34 Score=323.97 Aligned_cols=203 Identities=23% Similarity=0.318 Sum_probs=162.9
Q ss_pred ccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCc-----CCCCcEEEECC---
Q 000720 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP-----RISGAAIKVHG--- 659 (1333)
Q Consensus 589 ~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~-----~~~G~~i~~~g--- 659 (1333)
..++++|++++|+. ...+++ ||++++||+++|+|+||||||||+++|+|+.+ |++|++ .++|
T Consensus 20 ~~l~~~~l~~~~~~--------~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i-~~~g~~i 90 (268)
T PRK14248 20 HILEVKDLSIYYGE--------KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEI-LYEGLNI 90 (268)
T ss_pred ceEEEEEEEEEeCC--------ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEE-EECCEEc
Confidence 46999999999963 358999 99999999999999999999999999999864 688975 4432
Q ss_pred ------------eEEEEcCCCCCCCCCHHHHhccCCcCC----H----HHHHHHHHHcccchHHHhhcCCCccccCCCCC
Q 000720 660 ------------KKAYVPQSSWIQTGTIRENILFGKDMR----Q----SFYEEVLEGCALNQDIEMWADGDLSVVGERGI 719 (1333)
Q Consensus 660 ------------~iayv~Q~~~i~~~Tv~enI~~g~~~~----~----~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~ 719 (1333)
.++|++|++.+++.|++||+.++.... . +...+.++.+++..++ ....+.++.
T Consensus 91 ~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~ 163 (268)
T PRK14248 91 LDSNINVVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEV-------KDRLHSSAL 163 (268)
T ss_pred ccccccHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcch-------HHHHhcCcc
Confidence 479999999988889999998753211 1 1112222333322111 123456788
Q ss_pred CCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhh-cCCEEEEEeCCeEE
Q 000720 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMKDGKIE 798 (1333)
Q Consensus 720 ~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~-~aD~i~vl~~G~i~ 798 (1333)
+||||||||++||||++++|+++||||||++||+.+++.+.+ +++.+.+++|||++||+++.+. .||++++|++|+++
T Consensus 164 ~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~ 242 (268)
T PRK14248 164 SLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEE-LITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLV 242 (268)
T ss_pred cCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHH-HHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999887765 4555555789999999999875 59999999999999
Q ss_pred EccChHHHHh
Q 000720 799 QSGKYEDLIA 808 (1333)
Q Consensus 799 ~~g~~~~l~~ 808 (1333)
+.|+++++..
T Consensus 243 ~~~~~~~~~~ 252 (268)
T PRK14248 243 EYDQTEQIFT 252 (268)
T ss_pred EeCCHHHHHh
Confidence 9999988865
No 220
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.5e-34 Score=325.91 Aligned_cols=202 Identities=27% Similarity=0.417 Sum_probs=164.5
Q ss_pred ccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC--------
Q 000720 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------- 659 (1333)
Q Consensus 589 ~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g-------- 659 (1333)
..++++|++++|+.+ ..+.+++ ||++++||+++|+||||||||||+++|+|+.+|++|++ .++|
T Consensus 6 ~~l~~~nl~~~~~~~------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I-~~~g~~i~~~~~ 78 (271)
T PRK13632 6 VMIKVENVSFSYPNS------ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEI-KIDGITISKENL 78 (271)
T ss_pred eEEEEEeEEEEcCCC------CccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE-EECCEecCcCCH
Confidence 358999999999642 2468999 99999999999999999999999999999999999986 5543
Q ss_pred -----eEEEEcCCC--CCCCCCHHHHhccCCc---CCHHH----HHHHHHHcccchHHHhhcCCCccccCCCCCCCChHH
Q 000720 660 -----KKAYVPQSS--WIQTGTIRENILFGKD---MRQSF----YEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (1333)
Q Consensus 660 -----~iayv~Q~~--~i~~~Tv~enI~~g~~---~~~~~----~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQ 725 (1333)
.++|++|+| .+++.|++||+.++.. ++.+. .+++++..++.. ..++++.+|||||
T Consensus 79 ~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~ 147 (271)
T PRK13632 79 KEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMED-----------YLDKEPQNLSGGQ 147 (271)
T ss_pred HHHhcceEEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHH-----------HhhCCcccCCHHH
Confidence 379999998 4567899999987532 22222 223333333321 2346778999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEecCchhhhhcCCEEEEEeCCeEEEccChH
Q 000720 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS-QKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYE 804 (1333)
Q Consensus 726 kqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~-~~TvIlvtH~~~~l~~aD~i~vl~~G~i~~~g~~~ 804 (1333)
|||++||||++.+|+++||||||++||+.+.+.+++.+.+...+ ++|+|++||+++.+..||++++|++|++.+.|+.+
T Consensus 148 ~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~ 227 (271)
T PRK13632 148 KQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPK 227 (271)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHH
Confidence 99999999999999999999999999999988887654443334 48999999999988789999999999999999988
Q ss_pred HHHh
Q 000720 805 DLIA 808 (1333)
Q Consensus 805 ~l~~ 808 (1333)
++..
T Consensus 228 ~~~~ 231 (271)
T PRK13632 228 EILN 231 (271)
T ss_pred HHhc
Confidence 8764
No 221
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=100.00 E-value=4e-34 Score=305.98 Aligned_cols=165 Identities=28% Similarity=0.542 Sum_probs=147.1
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC----------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g---------- 659 (1333)
++++|++++|+.. ..+.+++ ||++++||+++|+||||||||||+++|+|+.+|.+|++ .++|
T Consensus 1 i~~~~~~~~~~~~------~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i-~~~g~~~~~~~~~~ 73 (178)
T cd03247 1 LSINNVSFSYPEQ------EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEI-TLDGVPVSDLEKAL 73 (178)
T ss_pred CEEEEEEEEeCCC------CccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEE-EECCEEHHHHHHHH
Confidence 4689999999643 2368999 99999999999999999999999999999999999986 6665
Q ss_pred --eEEEEcCCCCCCCCCHHHHhccCCcCCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHHcc
Q 000720 660 --KKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYS 737 (1333)
Q Consensus 660 --~iayv~Q~~~i~~~Tv~enI~~g~~~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~ 737 (1333)
.++|++|++++++.|++||+ +.+||||||||++||||++.
T Consensus 74 ~~~i~~~~q~~~~~~~tv~~~i--------------------------------------~~~LS~G~~qrv~laral~~ 115 (178)
T cd03247 74 SSLISVLNQRPYLFDTTLRNNL--------------------------------------GRRFSGGERQRLALARILLQ 115 (178)
T ss_pred HhhEEEEccCCeeecccHHHhh--------------------------------------cccCCHHHHHHHHHHHHHhc
Confidence 37999999998888999998 45899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhcCCEEEEEeCCeEEEcc
Q 000720 738 NSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSG 801 (1333)
Q Consensus 738 ~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~aD~i~vl~~G~i~~~g 801 (1333)
+|+++||||||++||+++.+.+++.+ +...+++|+|++||++++++.||++++|++|++++.|
T Consensus 116 ~p~~lllDEP~~~LD~~~~~~l~~~l-~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 116 DAPIVLLDEPTVGLDPITERQLLSLI-FEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178 (178)
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHH-HHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999988777644 4445689999999999999889999999999998754
No 222
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.7e-34 Score=322.73 Aligned_cols=199 Identities=19% Similarity=0.301 Sum_probs=161.6
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC---------
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g--------- 659 (1333)
.++++|+++.|+. .+.+++ ||++++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 5 ~l~~~~l~~~~~~--------~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i-~~~g~~~~~~~~~ 75 (255)
T PRK11300 5 LLSVSGLMMRFGG--------LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTI-LLRGQHIEGLPGH 75 (255)
T ss_pred eEEEeeEEEEECC--------EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceE-EECCEECCCCCHH
Confidence 5899999999953 368999 99999999999999999999999999999999999986 5554
Q ss_pred -----eEEEEcCCCCCCC-CCHHHHhccCCcC----------------CH------HHHHHHHHHcccchHHHhhcCCCc
Q 000720 660 -----KKAYVPQSSWIQT-GTIRENILFGKDM----------------RQ------SFYEEVLEGCALNQDIEMWADGDL 711 (1333)
Q Consensus 660 -----~iayv~Q~~~i~~-~Tv~enI~~g~~~----------------~~------~~~~~v~~~~~l~~d~~~~~~g~~ 711 (1333)
.++|++|++.++. .|++||+.++... +. .+.++.++.. |..
T Consensus 76 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------gl~ 144 (255)
T PRK11300 76 QIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERV-----------GLL 144 (255)
T ss_pred HHHhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhC-----------Chh
Confidence 2689999998765 5999999975310 00 0111111211 222
Q ss_pred cccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEecCchhhhhc-CCEE
Q 000720 712 SVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS-QKTVLYTTHQLEFLDA-ADLV 789 (1333)
Q Consensus 712 t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~-~~TvIlvtH~~~~l~~-aD~i 789 (1333)
...++++.+||||||||++||||++.+|+++||||||++||+...+.+.+.+.+...+ ++|||++||+++.+.. ||++
T Consensus 145 ~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i 224 (255)
T PRK11300 145 EHANRQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRI 224 (255)
T ss_pred hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEE
Confidence 3445788899999999999999999999999999999999999988777654443344 7899999999999855 9999
Q ss_pred EEEeCCeEEEccChHHHHh
Q 000720 790 LVMKDGKIEQSGKYEDLIA 808 (1333)
Q Consensus 790 ~vl~~G~i~~~g~~~~l~~ 808 (1333)
++|++|++++.|+.+++..
T Consensus 225 ~~l~~g~i~~~~~~~~~~~ 243 (255)
T PRK11300 225 YVVNQGTPLANGTPEEIRN 243 (255)
T ss_pred EEEECCeEEecCCHHHHhh
Confidence 9999999999999888754
No 223
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=8.2e-34 Score=321.45 Aligned_cols=198 Identities=25% Similarity=0.416 Sum_probs=161.5
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC----------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g---------- 659 (1333)
++++|++++|+. ...+++ ||++++|++++|+||||||||||+++|+|+.+|++|++ .++|
T Consensus 3 l~~~~l~~~~~~--------~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i-~~~g~~~~~~~~~~ 73 (258)
T PRK13548 3 LEARNLSVRLGG--------RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEV-RLNGRPLADWSPAE 73 (258)
T ss_pred EEEEeEEEEeCC--------eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEE-EECCEEcccCCHHH
Confidence 789999999963 358999 99999999999999999999999999999999999986 5554
Q ss_pred ---eEEEEcCCCCC-CCCCHHHHhccCCcCC-------HHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHH
Q 000720 660 ---KKAYVPQSSWI-QTGTIRENILFGKDMR-------QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQR 728 (1333)
Q Consensus 660 ---~iayv~Q~~~i-~~~Tv~enI~~g~~~~-------~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqR 728 (1333)
.++|++|++.+ ++.|++||+.++.... ..+.++.++..++. ...+..+.+||||||||
T Consensus 74 ~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSgGe~qr 142 (258)
T PRK13548 74 LARRRAVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLA-----------HLAGRDYPQLSGGEQQR 142 (258)
T ss_pred hhhheEEEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCH-----------hHhcCCcccCCHHHHHH
Confidence 37999999876 6789999998763211 11222333333332 12345778999999999
Q ss_pred HHHHHHHc------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCeEEEecCchhhhh-cCCEEEEEeCCeEEEc
Q 000720 729 IQLARAVY------SNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-LSQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQS 800 (1333)
Q Consensus 729 v~LARAl~------~~~~illLDEP~saLD~~~~~~l~~~~~~~~-~~~~TvIlvtH~~~~l~-~aD~i~vl~~G~i~~~ 800 (1333)
++||||++ .+|+++||||||++||+.+.+.+.+.+.+.. .+++|||++||+++.+. .||+|++|++|++++.
T Consensus 143 v~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~ 222 (258)
T PRK13548 143 VQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVAD 222 (258)
T ss_pred HHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEee
Confidence 99999999 5999999999999999999887776444333 35799999999999986 5999999999999999
Q ss_pred cChHHHHh
Q 000720 801 GKYEDLIA 808 (1333)
Q Consensus 801 g~~~~l~~ 808 (1333)
|+++++..
T Consensus 223 ~~~~~~~~ 230 (258)
T PRK13548 223 GTPAEVLT 230 (258)
T ss_pred CCHHHHhC
Confidence 99988765
No 224
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.2e-34 Score=320.43 Aligned_cols=203 Identities=25% Similarity=0.333 Sum_probs=162.7
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcC-----CCCcEEEECC----
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR-----ISGAAIKVHG---- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~-----~~G~~i~~~g---- 659 (1333)
.++++|++++|+. .+.+++ ||++++||+++|+||||||||||+++|+|+.+| ++|++ .++|
T Consensus 3 ~l~~~~l~~~~~~--------~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i-~~~g~~i~ 73 (250)
T PRK14247 3 KIEIRDLKVSFGQ--------VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEV-YLDGQDIF 73 (250)
T ss_pred eEEEEeeEEEECC--------eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEE-EECCEECC
Confidence 4889999999963 357999 999999999999999999999999999999874 68976 5544
Q ss_pred ---------eEEEEcCCCC-CCCCCHHHHhccCCcC-----CHH----HHHHHHHHcccchHHHhhcCCCccccCCCCCC
Q 000720 660 ---------KKAYVPQSSW-IQTGTIRENILFGKDM-----RQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1333)
Q Consensus 660 ---------~iayv~Q~~~-i~~~Tv~enI~~g~~~-----~~~----~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~ 720 (1333)
.++|++|++. +++.|++||+.++... ... +..+.++.+++.+.+. ...+..+.+
T Consensus 74 ~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~ 146 (250)
T PRK14247 74 KMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVK-------DRLDAPAGK 146 (250)
T ss_pred cCCHHHHhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchh-------hhhcCCccc
Confidence 4799999986 4578999999875321 111 1223333333322111 123467789
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhh-cCCEEEEEeCCeEEE
Q 000720 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQ 799 (1333)
Q Consensus 721 LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~-~aD~i~vl~~G~i~~ 799 (1333)
||||||||++||||++++|++++|||||++||+.+.+.+.+.+ +...+++|+|++||+++.+. .||++++|++|++++
T Consensus 147 LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l-~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 225 (250)
T PRK14247 147 LSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLF-LELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVE 225 (250)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHH-HHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEE
Confidence 9999999999999999999999999999999999988877654 44456899999999999985 599999999999999
Q ss_pred ccChHHHHhh
Q 000720 800 SGKYEDLIAD 809 (1333)
Q Consensus 800 ~g~~~~l~~~ 809 (1333)
.|+++++.++
T Consensus 226 ~g~~~~~~~~ 235 (250)
T PRK14247 226 WGPTREVFTN 235 (250)
T ss_pred ECCHHHHHcC
Confidence 9999988753
No 225
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.4e-34 Score=325.58 Aligned_cols=202 Identities=27% Similarity=0.374 Sum_probs=165.1
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC---------
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g--------- 659 (1333)
.++++|++++|+.. ...+.+++ |+++++||+++|+|+||||||||+++|+|+++|.+|++ .++|
T Consensus 4 ~l~~~~l~~~~~~~-----~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i-~~~g~~i~~~~~~ 77 (277)
T PRK13642 4 ILEVENLVFKYEKE-----SDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKV-KIDGELLTAENVW 77 (277)
T ss_pred eEEEEEEEEEcCCC-----CcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEE-EECCEECCcCCHH
Confidence 48899999999743 23458999 99999999999999999999999999999999999986 6654
Q ss_pred ----eEEEEcCCCC--CCCCCHHHHhccCCc---CCHH----HHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHH
Q 000720 660 ----KKAYVPQSSW--IQTGTIRENILFGKD---MRQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQK 726 (1333)
Q Consensus 660 ----~iayv~Q~~~--i~~~Tv~enI~~g~~---~~~~----~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQk 726 (1333)
.++|++|+|. ++..|+.|||.++.. ...+ +.+++++.+++.. .....+.+||||||
T Consensus 78 ~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~ 146 (277)
T PRK13642 78 NLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLD-----------FKTREPARLSGGQK 146 (277)
T ss_pred HHhcceEEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHh-----------HhhCCcccCCHHHH
Confidence 3799999983 667899999987532 1111 2233334333321 22356789999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEecCchhhhhcCCEEEEEeCCeEEEccChHH
Q 000720 727 QRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS-QKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYED 805 (1333)
Q Consensus 727 qRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~-~~TvIlvtH~~~~l~~aD~i~vl~~G~i~~~g~~~~ 805 (1333)
||++||||++.+|+++||||||++||+.+.+.+.+.+.+...+ +.|+|++||+++.+..||+|++|++|++++.|++++
T Consensus 147 qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~ 226 (277)
T PRK13642 147 QRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSE 226 (277)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999988887644333333 799999999999987899999999999999999998
Q ss_pred HHh
Q 000720 806 LIA 808 (1333)
Q Consensus 806 l~~ 808 (1333)
+..
T Consensus 227 ~~~ 229 (277)
T PRK13642 227 LFA 229 (277)
T ss_pred Hhc
Confidence 875
No 226
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=3.2e-34 Score=316.10 Aligned_cols=187 Identities=24% Similarity=0.386 Sum_probs=151.1
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC----------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g---------- 659 (1333)
++++|++++|+.+ .+.+++ ||++++||+++|+||||||||||+++|+|+.+|.+|++ .++|
T Consensus 2 l~~~~l~~~~~~~-------~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i-~~~g~~~~~~~~~~ 73 (214)
T TIGR02673 2 IEFHNVSKAYPGG-------VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQV-RIAGEDVNRLRGRQ 73 (214)
T ss_pred EEEEeeeEEeCCC-------ceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE-EECCEEcccCCHHH
Confidence 6789999999522 368999 99999999999999999999999999999999999986 4443
Q ss_pred ------eEEEEcCCCCCC-CCCHHHHhccCCc---CCH----HHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHH
Q 000720 660 ------KKAYVPQSSWIQ-TGTIRENILFGKD---MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (1333)
Q Consensus 660 ------~iayv~Q~~~i~-~~Tv~enI~~g~~---~~~----~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQ 725 (1333)
.++|++|+|.++ ..|++||+.++.. .+. ++.++.++..++.+ .....+.+|||||
T Consensus 74 ~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~ 142 (214)
T TIGR02673 74 LPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEH-----------KADAFPEQLSGGE 142 (214)
T ss_pred HHHHHhheEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh-----------hhhCChhhCCHHH
Confidence 479999999876 4799999987532 111 22233344333322 1235567999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeCCe
Q 000720 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGK 796 (1333)
Q Consensus 726 kqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~ 796 (1333)
|||++||||++.+|+++||||||++||+.+...+.+.+.+...+++|+|++||+++++.. ||++++|++|+
T Consensus 143 ~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 143 QQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 999999999999999999999999999999888776544433458999999999999875 99999999985
No 227
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=3.8e-34 Score=319.11 Aligned_cols=198 Identities=27% Similarity=0.410 Sum_probs=159.7
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC----------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g---------- 659 (1333)
++++|+++.|+. .+.+++ ||++++||+++|+||||||||||+++|+|+++|.+|++ .++|
T Consensus 1 l~~~~l~~~~~~--------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~g~~~~~~~~~~ 71 (230)
T TIGR03410 1 LEVSNLNVYYGQ--------SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSI-RLDGEDITKLPPHE 71 (230)
T ss_pred CEEEeEEEEeCC--------eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEE-EECCEECCCCCHHH
Confidence 468999999863 368999 99999999999999999999999999999999999986 5543
Q ss_pred ----eEEEEcCCCCCCC-CCHHHHhccCCcCC----HHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHH
Q 000720 660 ----KKAYVPQSSWIQT-GTIRENILFGKDMR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQ 730 (1333)
Q Consensus 660 ----~iayv~Q~~~i~~-~Tv~enI~~g~~~~----~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~ 730 (1333)
.++|++|++.++. .|++||+.++.... .+..+++++..+ +.....++++.+||||||||++
T Consensus 72 ~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~----------~l~~~~~~~~~~LS~G~~qrv~ 141 (230)
T TIGR03410 72 RARAGIAYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFP----------VLKEMLGRRGGDLSGGQQQQLA 141 (230)
T ss_pred HHHhCeEEeccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHH----------hHHHHhhCChhhCCHHHHHHHH
Confidence 3799999997765 59999998764221 111222222221 0112234678899999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEecCchhhhhc-CCEEEEEeCCeEEEccChHHHH
Q 000720 731 LARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS-QKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDLI 807 (1333)
Q Consensus 731 LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~-~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~~g~~~~l~ 807 (1333)
||||++++|+++||||||++||+.+.+++.+.+.+...+ ++|+|++||+++++.. ||+++++++|++++.|+.+++.
T Consensus 142 la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~~ 220 (230)
T TIGR03410 142 IARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDELD 220 (230)
T ss_pred HHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHcC
Confidence 999999999999999999999999988777654443333 7899999999999875 9999999999999999988873
No 228
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=4.6e-34 Score=330.27 Aligned_cols=197 Identities=26% Similarity=0.410 Sum_probs=163.5
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC----------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g---------- 659 (1333)
++++|++++|++ ...++| ||++++||+++|+||||||||||+++|+|+.+|++|++ .++|
T Consensus 3 l~~~~l~~~~~~--------~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i-~i~g~~~~~~~~~~ 73 (301)
T TIGR03522 3 IRVSSLTKLYGT--------QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSV-QVCGEDVLQNPKEV 73 (301)
T ss_pred EEEEEEEEEECC--------EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEE-EECCEEcccChHHH
Confidence 789999999963 358999 99999999999999999999999999999999999986 6655
Q ss_pred --eEEEEcCCCCCCC-CCHHHHhccCCcC---C----HHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHH
Q 000720 660 --KKAYVPQSSWIQT-GTIRENILFGKDM---R----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRI 729 (1333)
Q Consensus 660 --~iayv~Q~~~i~~-~Tv~enI~~g~~~---~----~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv 729 (1333)
.+||+||++.++. .|++||+.+.... . .++.++.++..++. ...++++.+||||||||+
T Consensus 74 ~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~-----------~~~~~~~~~LS~G~~qrv 142 (301)
T TIGR03522 74 QRNIGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLR-----------PEQHKKIGQLSKGYRQRV 142 (301)
T ss_pred HhceEEecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc-----------hHhcCchhhCCHHHHHHH
Confidence 4799999998765 5999999764321 1 11223333333332 233567889999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeCCeEEEccChHHHHh
Q 000720 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDLIA 808 (1333)
Q Consensus 730 ~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~~g~~~~l~~ 808 (1333)
+||||++++|++++|||||+|||+...+.+.+. ++.+.+++|||++||+++.++. ||+|++|++|++++.|+.+++..
T Consensus 143 ~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~-l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 221 (301)
T TIGR03522 143 GLAQALIHDPKVLILDEPTTGLDPNQLVEIRNV-IKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSA 221 (301)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH-HHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHH
Confidence 999999999999999999999999998877764 4555568999999999998865 99999999999999999998865
No 229
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.4e-34 Score=318.22 Aligned_cols=204 Identities=20% Similarity=0.303 Sum_probs=161.1
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC---------
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g--------- 659 (1333)
.++++|+++.|+. .+.+++ ||++++||+++|+||||||||||+++|+|+.+|++|++ .++|
T Consensus 5 ~l~~~~l~~~~~~--------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i-~~~g~~~~~~~~~ 75 (237)
T PRK11614 5 MLSFDKVSAHYGK--------IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRI-VFDGKDITDWQTA 75 (237)
T ss_pred EEEEEeEEEeeCC--------ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceE-EECCEecCCCCHH
Confidence 4889999999853 368999 99999999999999999999999999999999999986 5544
Q ss_pred -----eEEEEcCCCCCCC-CCHHHHhccCCcC-CHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHH
Q 000720 660 -----KKAYVPQSSWIQT-GTIRENILFGKDM-RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLA 732 (1333)
Q Consensus 660 -----~iayv~Q~~~i~~-~Tv~enI~~g~~~-~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LA 732 (1333)
.++|++|++.++. .|++||+.++... .....++.++. -++.++... .....++.+||||||||++||
T Consensus 76 ~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~-----~l~~~~~l~-~~~~~~~~~LS~G~~qrl~la 149 (237)
T PRK11614 76 KIMREAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKW-----VYELFPRLH-ERRIQRAGTMSGGEQQMLAIG 149 (237)
T ss_pred HHHHhCEEEeccCcccCCCCcHHHHHHHhhhccChhHHHHHHHH-----HHHHHHHHH-HHHhCchhhCCHHHHHHHHHH
Confidence 3799999987765 5999999876422 11111111111 011111001 112356789999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhh-cCCEEEEEeCCeEEEccChHHHHh
Q 000720 733 RAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKYEDLIA 808 (1333)
Q Consensus 733 RAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~-~aD~i~vl~~G~i~~~g~~~~l~~ 808 (1333)
||++.+|+++||||||++||+.+.+.+.+.+.+...+++|+|++||+++++. .||++++|++|++++.|+++++..
T Consensus 150 ~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (237)
T PRK11614 150 RALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLA 226 (237)
T ss_pred HHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhc
Confidence 9999999999999999999999988877654443345899999999999865 599999999999999999998864
No 230
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=3.9e-34 Score=318.63 Aligned_cols=196 Identities=30% Similarity=0.395 Sum_probs=153.3
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC----------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g---------- 659 (1333)
++++|++++|+... ...+.+++ |+++++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 2 l~~~~v~~~~~~~~----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~g~~~~~~~~~~ 76 (228)
T cd03257 2 LEVKNLSVSFPTGG----GSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSI-IFDGKDLLKLSRRL 76 (228)
T ss_pred eEEEeeeEeccCCC----cceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE-EECCEEccccchhh
Confidence 67899999996420 11368999 99999999999999999999999999999999999986 4433
Q ss_pred ------eEEEEcCCCC--C-CCCCHHHHhccCCcC-----CHHHHH----HHHHHcccchHHHhhcCCCccccCCCCCCC
Q 000720 660 ------KKAYVPQSSW--I-QTGTIRENILFGKDM-----RQSFYE----EVLEGCALNQDIEMWADGDLSVVGERGINL 721 (1333)
Q Consensus 660 ------~iayv~Q~~~--i-~~~Tv~enI~~g~~~-----~~~~~~----~v~~~~~l~~d~~~~~~g~~t~ig~~g~~L 721 (1333)
+++|++|++. + ...|++||+.++... .....+ +.++..++. ....++++.+|
T Consensus 77 ~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~----------~~~~~~~~~~L 146 (228)
T cd03257 77 RKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLP----------EEVLNRYPHEL 146 (228)
T ss_pred HHHhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCC----------hhHhhCCchhc
Confidence 4899999983 3 467999999764211 111111 122222211 12345678899
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEecCchhhhh-cCCEEEEEeCCeEEE
Q 000720 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS-QKTVLYTTHQLEFLD-AADLVLVMKDGKIEQ 799 (1333)
Q Consensus 722 SGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~-~~TvIlvtH~~~~l~-~aD~i~vl~~G~i~~ 799 (1333)
|||||||++||||++.+|+++||||||++||+.+.+.+.+.+.+...+ ++|||++||+++.+. .||++++|++|++++
T Consensus 147 S~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~ 226 (228)
T cd03257 147 SGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVE 226 (228)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEe
Confidence 999999999999999999999999999999999988777654433334 799999999999987 599999999999986
Q ss_pred cc
Q 000720 800 SG 801 (1333)
Q Consensus 800 ~g 801 (1333)
.|
T Consensus 227 ~g 228 (228)
T cd03257 227 EG 228 (228)
T ss_pred cC
Confidence 54
No 231
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.6e-34 Score=318.69 Aligned_cols=198 Identities=26% Similarity=0.352 Sum_probs=159.6
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC---------
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g--------- 659 (1333)
.++++|++++|+. .+.+++ ||++++||+++|+||||||||||+++|+|+.+|++|++ .++|
T Consensus 2 ~l~~~~l~~~~~~--------~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~g~~~~~~~~~ 72 (242)
T PRK11124 2 SIQLNGINCFYGA--------HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTL-NIAGNHFDFSKTP 72 (242)
T ss_pred EEEEEeeEEEECC--------eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE-EECCEeccccccc
Confidence 3789999999963 358999 99999999999999999999999999999999999986 5543
Q ss_pred ----------eEEEEcCCCCCCC-CCHHHHhccCC-c---CCHH----HHHHHHHHcccchHHHhhcCCCccccCCCCCC
Q 000720 660 ----------KKAYVPQSSWIQT-GTIRENILFGK-D---MRQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1333)
Q Consensus 660 ----------~iayv~Q~~~i~~-~Tv~enI~~g~-~---~~~~----~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~ 720 (1333)
.++|++|++.++. .|++||+.++. . .... +..+.++..++ ....+..+.+
T Consensus 73 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl-----------~~~~~~~~~~ 141 (242)
T PRK11124 73 SDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRL-----------KPYADRFPLH 141 (242)
T ss_pred chhhHHHHHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-----------hhhhhCChhh
Confidence 3799999997765 69999996421 1 1111 11222222222 2334567789
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCeEEEecCchhhhhc-CCEEEEEeCCeEE
Q 000720 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-LSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIE 798 (1333)
Q Consensus 721 LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~-~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~ 798 (1333)
||||||||++||||++.+|+++||||||++||+.+.+.+.+. ++.. .+++|+|++||+++.+.. ||++++|++|+++
T Consensus 142 LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~-l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~ 220 (242)
T PRK11124 142 LSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSI-IRELAETGITQVIVTHEVEVARKTASRVVYMENGHIV 220 (242)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHH-HHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEE
Confidence 999999999999999999999999999999999998887764 4444 358999999999999865 9999999999999
Q ss_pred EccChHHHHh
Q 000720 799 QSGKYEDLIA 808 (1333)
Q Consensus 799 ~~g~~~~l~~ 808 (1333)
+.|+++++.+
T Consensus 221 ~~~~~~~~~~ 230 (242)
T PRK11124 221 EQGDASCFTQ 230 (242)
T ss_pred EeCCHHHhcC
Confidence 9999887643
No 232
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-33 Score=319.45 Aligned_cols=202 Identities=25% Similarity=0.357 Sum_probs=163.1
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCC-----CCcEEEEC-----
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRI-----SGAAIKVH----- 658 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~-----~G~~i~~~----- 658 (1333)
.++++|+++.|+. .+.+++ ||++++|++++|+||||||||||+++|+|+.+|. +|++ .++
T Consensus 4 ~l~~~~l~~~~~~--------~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v-~~~g~~~~ 74 (251)
T PRK14249 4 KIKIRGVNFFYHK--------HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAV-LLDNENIY 74 (251)
T ss_pred eEEEEEEEEEECC--------eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEE-EECCEEcc
Confidence 5889999999963 358999 9999999999999999999999999999999987 5765 332
Q ss_pred ----------CeEEEEcCCCCCCCCCHHHHhccCCcCC----HHH----HHHHHHHcccchHHHhhcCCCccccCCCCCC
Q 000720 659 ----------GKKAYVPQSSWIQTGTIRENILFGKDMR----QSF----YEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1333)
Q Consensus 659 ----------g~iayv~Q~~~i~~~Tv~enI~~g~~~~----~~~----~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~ 720 (1333)
..++|++|++.+++.|++||+.++.... ++. .++.++..++.+.+ .+..++++.+
T Consensus 75 ~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~ 147 (251)
T PRK14249 75 SPNLDVVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEV-------KDNLHKSGLA 147 (251)
T ss_pred ccccChHHhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhh-------hhHhhCCccc
Confidence 3489999999888889999998864321 111 11122222222111 1234578899
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeCCeEEE
Q 000720 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQ 799 (1333)
Q Consensus 721 LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~ 799 (1333)
||||||||++||||++.+|+++||||||++||+.+...+.+ +++.+.+++|||++||+++.+.. ||++++|++|++++
T Consensus 148 LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~ 226 (251)
T PRK14249 148 LSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEE-LMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVE 226 (251)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHH-HHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEE
Confidence 99999999999999999999999999999999999887765 55555567999999999999865 89999999999999
Q ss_pred ccChHHHHh
Q 000720 800 SGKYEDLIA 808 (1333)
Q Consensus 800 ~g~~~~l~~ 808 (1333)
.|+.+++..
T Consensus 227 ~~~~~~~~~ 235 (251)
T PRK14249 227 YGRTGEIFS 235 (251)
T ss_pred eCCHHHHHh
Confidence 999998865
No 233
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=7.9e-34 Score=299.93 Aligned_cols=206 Identities=27% Similarity=0.415 Sum_probs=167.3
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECCe--------
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK-------- 660 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g~-------- 660 (1333)
-.+++|.+..|.. ..+|++ ||++++||+++++|+||+||||||++|.|..++.+|++ ..+|+
T Consensus 3 mL~v~~l~~~YG~--------~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I-~~~G~dit~~p~~ 73 (237)
T COG0410 3 MLEVENLSAGYGK--------IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRI-IFDGEDITGLPPH 73 (237)
T ss_pred ceeEEeEeecccc--------eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeE-EECCeecCCCCHH
Confidence 3678899888864 478999 99999999999999999999999999999999999986 66663
Q ss_pred ------EEEEcCCCCCC-CCCHHHHhccCCcCCHH-HHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHH
Q 000720 661 ------KAYVPQSSWIQ-TGTIRENILFGKDMRQS-FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLA 732 (1333)
Q Consensus 661 ------iayv~Q~~~i~-~~Tv~enI~~g~~~~~~-~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LA 732 (1333)
++||||...+| +.||+||+..|....+. ...+. .+++-.+.+|.- ....++++.+|||||||-++||
T Consensus 74 ~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~~~~~~~----~~e~v~~lFP~L-ker~~~~aG~LSGGEQQMLAia 148 (237)
T COG0410 74 ERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQER----DLEEVYELFPRL-KERRNQRAGTLSGGEQQMLAIA 148 (237)
T ss_pred HHHhCCeEeCcccccchhhCcHHHHHhhhhhcccccccccc----cHHHHHHHChhH-HHHhcCcccCCChHHHHHHHHH
Confidence 69999998876 57999999987543321 11110 011223334421 1234578999999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEecCchhhh-hcCCEEEEEeCCeEEEccChHHHHhh
Q 000720 733 RAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS-QKTVLYTTHQLEFL-DAADLVLVMKDGKIEQSGKYEDLIAD 809 (1333)
Q Consensus 733 RAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~-~~TvIlvtH~~~~l-~~aD~i~vl~~G~i~~~g~~~~l~~~ 809 (1333)
|||+.+|++++||||+.||-|...++||+.+.+...+ +.||++|.++..+. +.|||.++|++|+|+.+|+.+++.++
T Consensus 149 RALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~ 227 (237)
T COG0410 149 RALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLAD 227 (237)
T ss_pred HHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcC
Confidence 9999999999999999999999999999855443334 56999999999985 66999999999999999999999873
No 234
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.8e-34 Score=323.04 Aligned_cols=201 Identities=19% Similarity=0.263 Sum_probs=163.8
Q ss_pred CccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC-------
Q 000720 588 DVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG------- 659 (1333)
Q Consensus 588 ~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g------- 659 (1333)
...+.++|++++|+. ...+++ ||++++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 5 ~~~l~i~~l~~~~~~--------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i-~~~g~~~~~~~ 75 (265)
T PRK10253 5 VARLRGEQLTLGYGK--------YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHV-WLDGEHIQHYA 75 (265)
T ss_pred ccEEEEEEEEEEECC--------EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEE-EECCEEhhhCC
Confidence 457999999999964 258999 99999999999999999999999999999999999986 6654
Q ss_pred ------eEEEEcCCCCCC-CCCHHHHhccCC-cC-------CH---HHHHHHHHHcccchHHHhhcCCCccccCCCCCCC
Q 000720 660 ------KKAYVPQSSWIQ-TGTIRENILFGK-DM-------RQ---SFYEEVLEGCALNQDIEMWADGDLSVVGERGINL 721 (1333)
Q Consensus 660 ------~iayv~Q~~~i~-~~Tv~enI~~g~-~~-------~~---~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~L 721 (1333)
.++|++|++.++ +.|++||+.++. +. .+ ++.++.++..++. ...+.++.+|
T Consensus 76 ~~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~L 144 (265)
T PRK10253 76 SKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGIT-----------HLADQSVDTL 144 (265)
T ss_pred HHHHhhheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCH-----------HHhcCCcccC
Confidence 379999998765 579999998752 11 11 1222333333332 1234678899
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEecCchhhhh-cCCEEEEEeCCeEEE
Q 000720 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQ 799 (1333)
Q Consensus 722 SGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~-~~~TvIlvtH~~~~l~-~aD~i~vl~~G~i~~ 799 (1333)
|||||||++||||++.+|+++||||||++||+.+.+.+.+.+.+... +++|+|++||+++.+. .||++++|++|++++
T Consensus 145 S~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~ 224 (265)
T PRK10253 145 SGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVA 224 (265)
T ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999998888765444333 3789999999999875 599999999999999
Q ss_pred ccChHHHHh
Q 000720 800 SGKYEDLIA 808 (1333)
Q Consensus 800 ~g~~~~l~~ 808 (1333)
.|+++++..
T Consensus 225 ~g~~~~~~~ 233 (265)
T PRK10253 225 QGAPKEIVT 233 (265)
T ss_pred eCCHHHHhh
Confidence 999988764
No 235
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.6e-34 Score=318.94 Aligned_cols=198 Identities=21% Similarity=0.369 Sum_probs=160.8
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC---------
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g--------- 659 (1333)
.++++|++++|+. .+.+++ ||++++||+++|+||||||||||+++|+|+.+|++|++ .++|
T Consensus 3 ~l~~~~l~~~~~~--------~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~g~~~~~~~~~ 73 (241)
T PRK10895 3 TLTAKNLAKAYKG--------RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNI-IIDDEDISLLPLH 73 (241)
T ss_pred eEEEeCcEEEeCC--------EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEE-EECCEECCCCCHH
Confidence 3789999999963 368999 99999999999999999999999999999999999986 5543
Q ss_pred -----eEEEEcCCCCCCC-CCHHHHhccCCcC----CHH----HHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHH
Q 000720 660 -----KKAYVPQSSWIQT-GTIRENILFGKDM----RQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (1333)
Q Consensus 660 -----~iayv~Q~~~i~~-~Tv~enI~~g~~~----~~~----~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQ 725 (1333)
.++|++|++.++. .|++||+.+.... +.. +.++.++..++ ....+.++.+|||||
T Consensus 74 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LS~G~ 142 (241)
T PRK10895 74 ARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHI-----------EHLRDSMGQSLSGGE 142 (241)
T ss_pred HHHHhCeEEeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCC-----------HHHhhcchhhCCHHH
Confidence 4799999987665 6999999875322 111 12222222222 123456788999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCeEEEecCchhhhh-cCCEEEEEeCCeEEEccCh
Q 000720 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-LSQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKY 803 (1333)
Q Consensus 726 kqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~-~~~~TvIlvtH~~~~l~-~aD~i~vl~~G~i~~~g~~ 803 (1333)
|||++||||++.+|+++||||||++||+...+.+.+. ++.+ .+++|+|++||+++.+. .||++++|++|++++.|++
T Consensus 143 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~-l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~ 221 (241)
T PRK10895 143 RRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRI-IEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTP 221 (241)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH-HHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCH
Confidence 9999999999999999999999999999998877654 4443 35899999999998775 4999999999999999999
Q ss_pred HHHHh
Q 000720 804 EDLIA 808 (1333)
Q Consensus 804 ~~l~~ 808 (1333)
+++.+
T Consensus 222 ~~~~~ 226 (241)
T PRK10895 222 TEILQ 226 (241)
T ss_pred HHHhc
Confidence 88764
No 236
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-33 Score=319.48 Aligned_cols=202 Identities=24% Similarity=0.375 Sum_probs=162.5
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcC-----CCCcEEEECC----
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR-----ISGAAIKVHG---- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~-----~~G~~i~~~g---- 659 (1333)
.++++|+++.|+. .+.++| ||++++||+++|+||||||||||+++|+|..++ ++|++ .++|
T Consensus 3 ~l~~~~l~~~~~~--------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i-~~~g~~~~ 73 (250)
T PRK14240 3 KISVKDLDLFYGD--------FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEV-LLDGQDIY 73 (250)
T ss_pred eEEEEEEEEEECC--------ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEE-EECCEEcc
Confidence 4889999999963 258999 999999999999999999999999999998763 57875 5443
Q ss_pred -----------eEEEEcCCCCCCCCCHHHHhccCCcCC----H----HHHHHHHHHcccchHHHhhcCCCccccCCCCCC
Q 000720 660 -----------KKAYVPQSSWIQTGTIRENILFGKDMR----Q----SFYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1333)
Q Consensus 660 -----------~iayv~Q~~~i~~~Tv~enI~~g~~~~----~----~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~ 720 (1333)
.++|++|++.+++.|++||+.++.... . ++..+.++.+++.+++. ...++.+.+
T Consensus 74 ~~~~~~~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~ 146 (250)
T PRK14240 74 KSDIDVNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVK-------DRLKKSALG 146 (250)
T ss_pred ccccchHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhH-------HHHhcCCCC
Confidence 479999999877799999998864211 1 11222333333322221 233567889
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeCCeEEE
Q 000720 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQ 799 (1333)
Q Consensus 721 LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~ 799 (1333)
||||||||++||||++.+|+++||||||++||+.+++.+.+ +++...+++|+|++||+++.+.. ||++++|++|++++
T Consensus 147 LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~-~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~ 225 (250)
T PRK14240 147 LSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEE-LIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVE 225 (250)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHH-HHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999887765 55555567899999999998755 99999999999999
Q ss_pred ccChHHHHh
Q 000720 800 SGKYEDLIA 808 (1333)
Q Consensus 800 ~g~~~~l~~ 808 (1333)
.|+.+++..
T Consensus 226 ~~~~~~~~~ 234 (250)
T PRK14240 226 FGDTVDLFT 234 (250)
T ss_pred eCCHHHHHh
Confidence 999988765
No 237
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=8e-34 Score=320.85 Aligned_cols=199 Identities=27% Similarity=0.342 Sum_probs=160.9
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC----------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g---------- 659 (1333)
|+++|++++|+. .+.+++ ||++++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 1 i~~~~l~~~~~~--------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~g~~i~~~~~~~ 71 (252)
T TIGR03005 1 VRFSDVTKRFGI--------LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQI-QVEGEQLYHMPGRN 71 (252)
T ss_pred CEEEEEEEEeCC--------eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE-EECCEEcccccccc
Confidence 468999999963 358999 99999999999999999999999999999999999986 4433
Q ss_pred ----------------eEEEEcCCCCCC-CCCHHHHhccCCc----CCHH----HHHHHHHHcccchHHHhhcCCCcccc
Q 000720 660 ----------------KKAYVPQSSWIQ-TGTIRENILFGKD----MRQS----FYEEVLEGCALNQDIEMWADGDLSVV 714 (1333)
Q Consensus 660 ----------------~iayv~Q~~~i~-~~Tv~enI~~g~~----~~~~----~~~~v~~~~~l~~d~~~~~~g~~t~i 714 (1333)
.++|++|++.++ ..|++||+.++.. .... +..+.++..++ ....
T Consensus 72 ~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl-----------~~~~ 140 (252)
T TIGR03005 72 GPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGL-----------ADKA 140 (252)
T ss_pred ccccccchhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-----------hhHh
Confidence 479999998766 5799999987521 1111 12222333222 2234
Q ss_pred CCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEecCchhhhh-cCCEEEEE
Q 000720 715 GERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS-QKTVLYTTHQLEFLD-AADLVLVM 792 (1333)
Q Consensus 715 g~~g~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~-~~TvIlvtH~~~~l~-~aD~i~vl 792 (1333)
++.+.+||||||||++||||++++|+++||||||++||+.+...+.+.+.+...+ ++|+|++||+++.+. .||++++|
T Consensus 141 ~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l 220 (252)
T TIGR03005 141 DHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFF 220 (252)
T ss_pred hcChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEE
Confidence 5677899999999999999999999999999999999999988777644433333 789999999999985 59999999
Q ss_pred eCCeEEEccChHHHHhh
Q 000720 793 KDGKIEQSGKYEDLIAD 809 (1333)
Q Consensus 793 ~~G~i~~~g~~~~l~~~ 809 (1333)
++|++++.|+++++.++
T Consensus 221 ~~G~i~~~g~~~~~~~~ 237 (252)
T TIGR03005 221 DKGRIVEQGKPDEIFRQ 237 (252)
T ss_pred ECCEEEEeCCHHHHhcC
Confidence 99999999999988753
No 238
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=3.6e-34 Score=331.55 Aligned_cols=186 Identities=25% Similarity=0.349 Sum_probs=153.3
Q ss_pred cccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC------------eEEEEcCCCCCCC-CCHH
Q 000720 611 TIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG------------KKAYVPQSSWIQT-GTIR 676 (1333)
Q Consensus 611 ~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g------------~iayv~Q~~~i~~-~Tv~ 676 (1333)
.+.+++ ||++++||+++|+||||||||||+++|+|+++|++|++ .++| ++||+||++.++. .|++
T Consensus 6 ~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i-~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 84 (302)
T TIGR01188 6 FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTA-RVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGR 84 (302)
T ss_pred eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEE-EECCEEcccCHHHHHhhcEEecCCCCCCCCCcHH
Confidence 367999 99999999999999999999999999999999999986 6655 3799999987654 6999
Q ss_pred HHhccCCcC---CH----HHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCC
Q 000720 677 ENILFGKDM---RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFS 749 (1333)
Q Consensus 677 enI~~g~~~---~~----~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDEP~s 749 (1333)
||+.+.... .. ++.+++++.+++.+ ..++++.+||||||||++||||++++|+++||||||+
T Consensus 85 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~ 153 (302)
T TIGR01188 85 ENLEMMGRLYGLPKDEAEERAEELLELFELGE-----------AADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTT 153 (302)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh-----------HhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 999874321 11 12333444444322 2345678999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeCCeEEEccChHHHHh
Q 000720 750 AVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDLIA 808 (1333)
Q Consensus 750 aLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~~g~~~~l~~ 808 (1333)
|||+.+++.+.+.+.+...+|+|||++||+++.+.. ||+|++|++|+++..|+++++.+
T Consensus 154 gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~ 213 (302)
T TIGR01188 154 GLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKR 213 (302)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHH
Confidence 999999888776544333458999999999999865 99999999999999999988865
No 239
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.2e-34 Score=323.35 Aligned_cols=201 Identities=23% Similarity=0.305 Sum_probs=162.6
Q ss_pred CccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC-------
Q 000720 588 DVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG------- 659 (1333)
Q Consensus 588 ~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g------- 659 (1333)
+..++++|++++|+. .+.+++ ||++++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 9 ~~~l~i~~l~~~~~~--------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i-~~~g~~~~~~~ 79 (265)
T PRK10575 9 DTTFALRNVSFRVPG--------RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEI-LLDAQPLESWS 79 (265)
T ss_pred CceEEEeeEEEEECC--------EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEE-EECCEehhhCC
Confidence 346999999999963 358999 99999999999999999999999999999999999986 6655
Q ss_pred ------eEEEEcCCCCC-CCCCHHHHhccCCc-C-------CH---HHHHHHHHHcccchHHHhhcCCCccccCCCCCCC
Q 000720 660 ------KKAYVPQSSWI-QTGTIRENILFGKD-M-------RQ---SFYEEVLEGCALNQDIEMWADGDLSVVGERGINL 721 (1333)
Q Consensus 660 ------~iayv~Q~~~i-~~~Tv~enI~~g~~-~-------~~---~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~L 721 (1333)
.++|++|++.+ +..|++||+.++.. . .. ++.++.++.+++.+ ..+....+|
T Consensus 80 ~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~L 148 (265)
T PRK10575 80 SKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKP-----------LAHRLVDSL 148 (265)
T ss_pred HHHHhhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHH-----------HhcCCcccC
Confidence 37999999754 45699999987531 0 11 12233334333321 234567799
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEecCchhhhh-cCCEEEEEeCCeEEE
Q 000720 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS-QKTVLYTTHQLEFLD-AADLVLVMKDGKIEQ 799 (1333)
Q Consensus 722 SGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~-~~TvIlvtH~~~~l~-~aD~i~vl~~G~i~~ 799 (1333)
|||||||++||||++.+|+++||||||++||+.+.+.+.+.+.+...+ ++|+|++||+++++. .||+|++|++|++++
T Consensus 149 SgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~ 228 (265)
T PRK10575 149 SGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIA 228 (265)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEE
Confidence 999999999999999999999999999999999988776644333333 789999999999985 599999999999999
Q ss_pred ccChHHHHh
Q 000720 800 SGKYEDLIA 808 (1333)
Q Consensus 800 ~g~~~~l~~ 808 (1333)
.|+.+++..
T Consensus 229 ~~~~~~~~~ 237 (265)
T PRK10575 229 QGTPAELMR 237 (265)
T ss_pred ecCHHHhcC
Confidence 999888764
No 240
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=7.6e-34 Score=319.19 Aligned_cols=197 Identities=22% Similarity=0.315 Sum_probs=161.5
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC----------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g---------- 659 (1333)
++++|+++.|+. .+.+++ ||++++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 3 i~~~~l~~~~~~--------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i-~~~g~~~~~~~~~~ 73 (242)
T TIGR03411 3 LYLEGLSVSFDG--------FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSV-LFGGTDLTGLPEHQ 73 (242)
T ss_pred EEEEeeEEEcCC--------eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeE-EECCeecCCCCHHH
Confidence 789999999963 358999 99999999999999999999999999999999999986 5543
Q ss_pred ----eEEEEcCCCCCCC-CCHHHHhccCCcCC---------------HHHHHHHHHHcccchHHHhhcCCCccccCCCCC
Q 000720 660 ----KKAYVPQSSWIQT-GTIRENILFGKDMR---------------QSFYEEVLEGCALNQDIEMWADGDLSVVGERGI 719 (1333)
Q Consensus 660 ----~iayv~Q~~~i~~-~Tv~enI~~g~~~~---------------~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~ 719 (1333)
.++|++|++.++. .|++||+.++.... +.+.++.++.. |.....++++.
T Consensus 74 ~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~ 142 (242)
T TIGR03411 74 IARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETI-----------GLADEADRLAG 142 (242)
T ss_pred HHhcCeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHc-----------CCchhhcCChh
Confidence 3799999998766 59999998753211 01111222222 22233456788
Q ss_pred CCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeCCeEE
Q 000720 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIE 798 (1333)
Q Consensus 720 ~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~ 798 (1333)
+||||||||++||||++.+|+++||||||++||+.+.+.+.+ +++.+.+++|+|++||+++.+.. ||+|++|++|+++
T Consensus 143 ~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~-~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~ 221 (242)
T TIGR03411 143 LLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAE-LLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVL 221 (242)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHH-HHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEE
Confidence 999999999999999999999999999999999999887766 45555557899999999999865 9999999999999
Q ss_pred EccChHHHHh
Q 000720 799 QSGKYEDLIA 808 (1333)
Q Consensus 799 ~~g~~~~l~~ 808 (1333)
+.|+++++..
T Consensus 222 ~~~~~~~~~~ 231 (242)
T TIGR03411 222 AEGSLDQVQA 231 (242)
T ss_pred eeCCHHHHhc
Confidence 9999988764
No 241
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=8.8e-34 Score=315.74 Aligned_cols=195 Identities=25% Similarity=0.329 Sum_probs=156.1
Q ss_pred ccEEEeeeEEEcCCcccccCCC-cccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC-------
Q 000720 589 VAIDIEAGEYAWDAREENFKKP-TIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG------- 659 (1333)
Q Consensus 589 ~~I~i~~~~fsw~~~~~~~~~~-~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g------- 659 (1333)
..++++|++++|+.+ .. .+.+++ ||++++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 5 ~~l~~~~l~~~~~~~-----~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i-~~~g~~~~~~~ 78 (228)
T PRK10584 5 NIVEVHHLKKSVGQG-----EHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEV-SLVGQPLHQMD 78 (228)
T ss_pred ceEEEeeeEEEccCC-----CcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeE-EECCEEcccCC
Confidence 358999999999753 11 358999 99999999999999999999999999999999999986 4443
Q ss_pred ----------eEEEEcCCCCCCC-CCHHHHhccCCcC---CH----HHHHHHHHHcccchHHHhhcCCCccccCCCCCCC
Q 000720 660 ----------KKAYVPQSSWIQT-GTIRENILFGKDM---RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINL 721 (1333)
Q Consensus 660 ----------~iayv~Q~~~i~~-~Tv~enI~~g~~~---~~----~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~L 721 (1333)
.++|++|++.++. .|++||+.++... +. ++.++.++.+++.+ ....++.+|
T Consensus 79 ~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~L 147 (228)
T PRK10584 79 EEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGK-----------RLDHLPAQL 147 (228)
T ss_pred HHHHHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHh-----------HhhCChhhC
Confidence 4899999987765 6999999864211 11 22233344444322 223567799
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEecCchhhhhcCCEEEEEeCCeEEEc
Q 000720 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS-QKTVLYTTHQLEFLDAADLVLVMKDGKIEQS 800 (1333)
Q Consensus 722 SGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~-~~TvIlvtH~~~~l~~aD~i~vl~~G~i~~~ 800 (1333)
|||||||++||||++.+|+++||||||++||+...+.+.+.+.+...+ ++|||++||+++++..||++++|++|++++.
T Consensus 148 S~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 148 SGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQEE 227 (228)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEec
Confidence 999999999999999999999999999999999988777654433333 7899999999998877999999999999753
No 242
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.1e-34 Score=324.48 Aligned_cols=198 Identities=21% Similarity=0.286 Sum_probs=159.9
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC----------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g---------- 659 (1333)
++++|++++|+. .+++++ ||++++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 2 l~~~~l~~~~~~--------~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i-~~~g~~i~~~~~~~ 72 (271)
T PRK13638 2 LATSDLWFRYQD--------EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAV-LWQGKPLDYSKRGL 72 (271)
T ss_pred eEEEEEEEEcCC--------cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEE-EECCEEcccccCCH
Confidence 678999999963 358999 99999999999999999999999999999999999986 4433
Q ss_pred -----eEEEEcCCCC--CCCCCHHHHhccCCc---CCHH----HHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHH
Q 000720 660 -----KKAYVPQSSW--IQTGTIRENILFGKD---MRQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (1333)
Q Consensus 660 -----~iayv~Q~~~--i~~~Tv~enI~~g~~---~~~~----~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQ 725 (1333)
.++|++|++. ++..|+.||+.++.. .+.. +.+++++..++.. ..+..+.+|||||
T Consensus 73 ~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgG~ 141 (271)
T PRK13638 73 LALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQH-----------FRHQPIQCLSHGQ 141 (271)
T ss_pred HHHHhheEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHh-----------HhcCCchhCCHHH
Confidence 3799999975 466789999987421 1211 1122333333321 1235678999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhh-cCCEEEEEeCCeEEEccChH
Q 000720 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKYE 804 (1333)
Q Consensus 726 kqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~-~aD~i~vl~~G~i~~~g~~~ 804 (1333)
|||++||||++.+|+++||||||++||+.+...+.+.+.+...+++|+|++||+++.+. .||++++|++|++++.|+++
T Consensus 142 ~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 221 (271)
T PRK13638 142 KKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPG 221 (271)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999988877644433345889999999999985 49999999999999999998
Q ss_pred HHHh
Q 000720 805 DLIA 808 (1333)
Q Consensus 805 ~l~~ 808 (1333)
++..
T Consensus 222 ~~~~ 225 (271)
T PRK13638 222 EVFA 225 (271)
T ss_pred HHhc
Confidence 8765
No 243
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=4.5e-34 Score=315.00 Aligned_cols=188 Identities=27% Similarity=0.354 Sum_probs=151.3
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC----------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g---------- 659 (1333)
++++|++++|+.. .+.+++ ||++++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 1 l~~~~l~~~~~~~-------~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~g~~i~~~~~~~ 72 (214)
T cd03292 1 IEFINVTKTYPNG-------TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTI-RVNGQDVSDLRGRA 72 (214)
T ss_pred CEEEEEEEEeCCC-------ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEE-EECCEEcccCCHHH
Confidence 4688999999632 358999 99999999999999999999999999999999999986 5543
Q ss_pred ------eEEEEcCCCCCCC-CCHHHHhccCCcC---CH----HHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHH
Q 000720 660 ------KKAYVPQSSWIQT-GTIRENILFGKDM---RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (1333)
Q Consensus 660 ------~iayv~Q~~~i~~-~Tv~enI~~g~~~---~~----~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQ 725 (1333)
.++|++|++.++. .|++||+.++... .. ++.++.++.+++.+ ..+..+.+|||||
T Consensus 73 ~~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~ 141 (214)
T cd03292 73 IPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSH-----------KHRALPAELSGGE 141 (214)
T ss_pred HHHHHHheEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHH-----------HhhCChhhcCHHH
Confidence 3799999987765 6999999875321 11 12223333333321 2235677999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeCCeE
Q 000720 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKI 797 (1333)
Q Consensus 726 kqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i 797 (1333)
|||++||||++.+|+++||||||++||+++.+.+.+.+.+...+++|+|++||+++.+.. ||++++|++|++
T Consensus 142 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 142 QQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999999887776544433458999999999999875 999999999974
No 244
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=1.2e-33 Score=321.57 Aligned_cols=208 Identities=24% Similarity=0.298 Sum_probs=161.8
Q ss_pred cEEEeeeEEEcCCccc-ccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC--------
Q 000720 590 AIDIEAGEYAWDAREE-NFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~-~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g-------- 659 (1333)
.++++|++++|+.... ......+.+++ ||++++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i-~~~g~~i~~~~~ 80 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTV-SFRGQDLYQLDR 80 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEE-EECCEEccccCH
Confidence 3789999999963200 00013468999 99999999999999999999999999999999999986 5443
Q ss_pred --------eEEEEcCCCC--C-CCCCHHHHhccCCc----CCH----HHHHHHHHHcccchHHHhhcCCCccccCCCCCC
Q 000720 660 --------KKAYVPQSSW--I-QTGTIRENILFGKD----MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1333)
Q Consensus 660 --------~iayv~Q~~~--i-~~~Tv~enI~~g~~----~~~----~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~ 720 (1333)
.++|++|+|. + ...|++||+.++.. +.. ++..++++..++.. ...+.++.+
T Consensus 81 ~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~----------~~~~~~~~~ 150 (265)
T TIGR02769 81 KQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRS----------EDADKLPRQ 150 (265)
T ss_pred HHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCh----------hhhhCChhh
Confidence 4899999973 3 35799999965421 121 11222333332211 123467889
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEecCchhhhh-cCCEEEEEeCCeEE
Q 000720 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS-QKTVLYTTHQLEFLD-AADLVLVMKDGKIE 798 (1333)
Q Consensus 721 LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~-~~TvIlvtH~~~~l~-~aD~i~vl~~G~i~ 798 (1333)
||||||||++||||++++|+++||||||++||+.+.+.+.+.+.+...+ ++|+|++||+++.+. .||++++|++|+++
T Consensus 151 LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~ 230 (265)
T TIGR02769 151 LSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIV 230 (265)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEE
Confidence 9999999999999999999999999999999999987776644333333 799999999999986 59999999999999
Q ss_pred EccChHHHHh
Q 000720 799 QSGKYEDLIA 808 (1333)
Q Consensus 799 ~~g~~~~l~~ 808 (1333)
+.|+.+++..
T Consensus 231 ~~g~~~~~~~ 240 (265)
T TIGR02769 231 EECDVAQLLS 240 (265)
T ss_pred EECCHHHHcC
Confidence 9999999876
No 245
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=4.5e-34 Score=314.29 Aligned_cols=186 Identities=31% Similarity=0.447 Sum_probs=149.7
Q ss_pred EeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC------------
Q 000720 593 IEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG------------ 659 (1333)
Q Consensus 593 i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g------------ 659 (1333)
++|++++|+.. ..+++++ ||++++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 2 ~~~l~~~~~~~------~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~g~~~~~~~~~~~~ 74 (211)
T cd03225 2 LKNLSFSYPDG------ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEV-LVDGKDLTKLSLKELR 74 (211)
T ss_pred ceeEEEecCCC------CeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceE-EECCEEcccCCHHHHH
Confidence 67889988642 2468999 99999999999999999999999999999999999986 5554
Q ss_pred -eEEEEcCCCC--CCCCCHHHHhccCCc---CCHH----HHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHH
Q 000720 660 -KKAYVPQSSW--IQTGTIRENILFGKD---MRQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRI 729 (1333)
Q Consensus 660 -~iayv~Q~~~--i~~~Tv~enI~~g~~---~~~~----~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv 729 (1333)
.++|++|++. +++.|++||+.++.. .+.. +.++.++..++. ....+++.+||||||||+
T Consensus 75 ~~i~~~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSgG~~qrv 143 (211)
T cd03225 75 RKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLE-----------GLRDRSPFTLSGGQKQRV 143 (211)
T ss_pred hhceEEecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcH-----------hhhcCCcccCCHHHHHHH
Confidence 3799999983 567899999987532 1111 122233333332 223467789999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeCCe
Q 000720 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGK 796 (1333)
Q Consensus 730 ~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~ 796 (1333)
+||||++++|+++||||||++||+.+++.+.+.+.+...+++|+|++||+++.+.. ||+|++|++|+
T Consensus 144 ~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 144 AIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 99999999999999999999999999888877544433458999999999999876 99999999985
No 246
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9e-34 Score=320.68 Aligned_cols=202 Identities=24% Similarity=0.332 Sum_probs=161.3
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcC-----CCCcEEEECC----
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR-----ISGAAIKVHG---- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~-----~~G~~i~~~g---- 659 (1333)
.++++|++++|+. .+.+++ ||++++||+++|+||||||||||+++|+|+++| ++|++ .++|
T Consensus 4 ~l~~~~l~~~~~~--------~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i-~~~g~~i~ 74 (253)
T PRK14267 4 AIETVNLRVYYGS--------NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEV-RLFGRNIY 74 (253)
T ss_pred eEEEEeEEEEeCC--------eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEE-EECCEEcc
Confidence 4889999999963 358999 999999999999999999999999999999987 48875 4433
Q ss_pred -----------eEEEEcCCCCCCC-CCHHHHhccCCcC-----CHH----HHHHHHHHcccchHHHhhcCCCccccCCCC
Q 000720 660 -----------KKAYVPQSSWIQT-GTIRENILFGKDM-----RQS----FYEEVLEGCALNQDIEMWADGDLSVVGERG 718 (1333)
Q Consensus 660 -----------~iayv~Q~~~i~~-~Tv~enI~~g~~~-----~~~----~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g 718 (1333)
+++|++|++.++. .|++||+.++... ..+ +.+++++..++..++. ...++++
T Consensus 75 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~ 147 (253)
T PRK14267 75 SPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVK-------DRLNDYP 147 (253)
T ss_pred ccccChHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchh-------hhhccCh
Confidence 4799999998765 5999999875321 111 1122222222221111 1235678
Q ss_pred CCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhh-cCCEEEEEeCCeE
Q 000720 719 INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMKDGKI 797 (1333)
Q Consensus 719 ~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~-~aD~i~vl~~G~i 797 (1333)
.+||||||||++||||++++|+++||||||++||+.+.+.+.+. ++...+++|+|++||+++.+. .||+|++|++|++
T Consensus 148 ~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~-l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i 226 (253)
T PRK14267 148 SNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEEL-LFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKL 226 (253)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHH-HHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEE
Confidence 89999999999999999999999999999999999998877764 444445799999999999875 4999999999999
Q ss_pred EEccChHHHHh
Q 000720 798 EQSGKYEDLIA 808 (1333)
Q Consensus 798 ~~~g~~~~l~~ 808 (1333)
++.|+++++.+
T Consensus 227 ~~~~~~~~~~~ 237 (253)
T PRK14267 227 IEVGPTRKVFE 237 (253)
T ss_pred EEeCCHHHHHh
Confidence 99999998865
No 247
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.1e-34 Score=324.84 Aligned_cols=204 Identities=25% Similarity=0.386 Sum_probs=165.5
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC---------
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g--------- 659 (1333)
-++++|++++|+.... ....+++++ ||+|++||+++|+|+||||||||+++|+|+++|++|++ .++|
T Consensus 4 ~l~~~~l~~~~~~~~~--~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i-~i~g~~i~~~~~~ 80 (280)
T PRK13633 4 MIKCKNVSYKYESNEE--STEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKV-YVDGLDTSDEENL 80 (280)
T ss_pred eEEEeeeEEEcCCCCC--CCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE-EECCEeccccccH
Confidence 4889999999974300 002468999 99999999999999999999999999999999999986 5543
Q ss_pred -----eEEEEcCCCC--CCCCCHHHHhccCCcC---CH----HHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHH
Q 000720 660 -----KKAYVPQSSW--IQTGTIRENILFGKDM---RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (1333)
Q Consensus 660 -----~iayv~Q~~~--i~~~Tv~enI~~g~~~---~~----~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQ 725 (1333)
.++|++|+|. ++..|+.||+.|+... +. ++.+++++.+++.+ ..++.+.+|||||
T Consensus 81 ~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~-----------~~~~~~~~LS~G~ 149 (280)
T PRK13633 81 WDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYE-----------YRRHAPHLLSGGQ 149 (280)
T ss_pred HHHhhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHh-----------HhhCCcccCCHHH
Confidence 3799999984 5567999999986421 21 22333444444432 2345678999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-h-CCCeEEEecCchhhhhcCCEEEEEeCCeEEEccCh
Q 000720 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-L-SQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKY 803 (1333)
Q Consensus 726 kqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~-~-~~~TvIlvtH~~~~l~~aD~i~vl~~G~i~~~g~~ 803 (1333)
|||++||||++.+|+++||||||++||+.+++.+.+. ++.+ . ++.|||++||+++.+..||++++|++|++++.|++
T Consensus 150 ~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~-l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~ 228 (280)
T PRK13633 150 KQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNT-IKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTP 228 (280)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHH-HHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCH
Confidence 9999999999999999999999999999998888764 4444 3 38899999999999877999999999999999999
Q ss_pred HHHHh
Q 000720 804 EDLIA 808 (1333)
Q Consensus 804 ~~l~~ 808 (1333)
+++..
T Consensus 229 ~~~~~ 233 (280)
T PRK13633 229 KEIFK 233 (280)
T ss_pred HHHhc
Confidence 98865
No 248
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-33 Score=321.06 Aligned_cols=203 Identities=24% Similarity=0.378 Sum_probs=164.1
Q ss_pred ccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCc-----CCCCcEEEECC---
Q 000720 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP-----RISGAAIKVHG--- 659 (1333)
Q Consensus 589 ~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~-----~~~G~~i~~~g--- 659 (1333)
..++++|++++|+. .+.+++ ||++++||+++|+|+||||||||+++|+|+.+ |++|++ .++|
T Consensus 9 ~~l~i~~v~~~~~~--------~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i-~~~g~~i 79 (264)
T PRK14243 9 TVLRTENLNVYYGS--------FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKV-TFHGKNL 79 (264)
T ss_pred eEEEEeeeEEEECC--------EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEE-EECCEEc
Confidence 35899999999963 358999 99999999999999999999999999999876 368875 4433
Q ss_pred ------------eEEEEcCCCCCCCCCHHHHhccCCcCC---H---HHHHHHHHHcccchHHHhhcCCCccccCCCCCCC
Q 000720 660 ------------KKAYVPQSSWIQTGTIRENILFGKDMR---Q---SFYEEVLEGCALNQDIEMWADGDLSVVGERGINL 721 (1333)
Q Consensus 660 ------------~iayv~Q~~~i~~~Tv~enI~~g~~~~---~---~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~L 721 (1333)
+++|++|++.+++.|++||+.++.... . ++..+.++.+++..++. ...++++.+|
T Consensus 80 ~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~L 152 (264)
T PRK14243 80 YAPDVDPVEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVK-------DKLKQSGLSL 152 (264)
T ss_pred cccccChHHHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHH-------HHhcCCcccC
Confidence 479999999887789999998764321 1 12223334444432222 1235678899
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEe-------
Q 000720 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMK------- 793 (1333)
Q Consensus 722 SGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~------- 793 (1333)
|||||||++||||++++|+++||||||++||+.+.+.+.+ ++..+.+++|||++||+++.+.. ||+|++|+
T Consensus 153 SgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~-~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~ 231 (264)
T PRK14243 153 SGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEE-LMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGG 231 (264)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHH-HHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeccccccc
Confidence 9999999999999999999999999999999999887765 45555556899999999998765 99999998
Q ss_pred --CCeEEEccChHHHHh
Q 000720 794 --DGKIEQSGKYEDLIA 808 (1333)
Q Consensus 794 --~G~i~~~g~~~~l~~ 808 (1333)
+|++++.|+.+++.+
T Consensus 232 ~~~g~i~~~~~~~~~~~ 248 (264)
T PRK14243 232 GRYGYLVEFDRTEKIFN 248 (264)
T ss_pred ccCceEEEeCCHHHHHh
Confidence 899999999999875
No 249
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.7e-34 Score=323.00 Aligned_cols=201 Identities=24% Similarity=0.307 Sum_probs=163.5
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC---------
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g--------- 659 (1333)
.++++|++++|+.. ..+.++| |+++++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 7 ~l~i~~l~~~~~~~------~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i-~~~g~~~~~~~~~ 79 (269)
T PRK13648 7 IIVFKNVSFQYQSD------ASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEI-FYNNQAITDDNFE 79 (269)
T ss_pred eEEEEEEEEEcCCC------CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEE-EECCEECCcCCHH
Confidence 58999999999743 2458999 99999999999999999999999999999999999986 6655
Q ss_pred ----eEEEEcCCCC--CCCCCHHHHhccCCcC---CHHH----HHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHH
Q 000720 660 ----KKAYVPQSSW--IQTGTIRENILFGKDM---RQSF----YEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQK 726 (1333)
Q Consensus 660 ----~iayv~Q~~~--i~~~Tv~enI~~g~~~---~~~~----~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQk 726 (1333)
.++|++|+|. ++..|+++|+.++... .... .+++++..++. ...+.++.+||||||
T Consensus 80 ~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G~~ 148 (269)
T PRK13648 80 KLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDML-----------ERADYEPNALSGGQK 148 (269)
T ss_pred HHHhheeEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCc-----------hhhhCCcccCCHHHH
Confidence 3799999985 5567999999886432 1111 12223322222 123456789999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEecCchhhhhcCCEEEEEeCCeEEEccChHH
Q 000720 727 QRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS-QKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYED 805 (1333)
Q Consensus 727 qRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~-~~TvIlvtH~~~~l~~aD~i~vl~~G~i~~~g~~~~ 805 (1333)
||++||||++.+|+++||||||++||+.+.+.+.+.+.+...+ ++|+|++||+++.+..||+|++|++|++++.|++++
T Consensus 149 qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~ 228 (269)
T PRK13648 149 QRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTE 228 (269)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHH
Confidence 9999999999999999999999999999988877644333333 789999999999887799999999999999999988
Q ss_pred HHh
Q 000720 806 LIA 808 (1333)
Q Consensus 806 l~~ 808 (1333)
+..
T Consensus 229 ~~~ 231 (269)
T PRK13648 229 IFD 231 (269)
T ss_pred Hhc
Confidence 765
No 250
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.1e-34 Score=324.33 Aligned_cols=200 Identities=26% Similarity=0.385 Sum_probs=163.3
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC---------
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g--------- 659 (1333)
.++++|++++|+.+ ...+++ ||++++||+++|+|+||||||||+++|+|+.+|++|++ .++|
T Consensus 3 ~l~~~~l~~~~~~~-------~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i-~~~g~~~~~~~~~ 74 (277)
T PRK13652 3 LIETRDLCYSYSGS-------KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSV-LIRGEPITKENIR 74 (277)
T ss_pred eEEEEEEEEEeCCC-------CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEE-EECCEECCcCCHH
Confidence 37899999999643 358999 99999999999999999999999999999999999986 6554
Q ss_pred ----eEEEEcCCCC--CCCCCHHHHhccCCc---CCHH----HHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHH
Q 000720 660 ----KKAYVPQSSW--IQTGTIRENILFGKD---MRQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQK 726 (1333)
Q Consensus 660 ----~iayv~Q~~~--i~~~Tv~enI~~g~~---~~~~----~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQk 726 (1333)
.++|++|+|. +++.|++||+.++.. .+.+ +.++.++.+++.+ ..+..+.+||||||
T Consensus 75 ~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~Gq~ 143 (277)
T PRK13652 75 EVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEE-----------LRDRVPHHLSGGEK 143 (277)
T ss_pred HHHhheEEEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChh-----------HhcCCcccCCHHHH
Confidence 3799999973 567899999987532 2222 2233344333322 23456789999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEecCchhhhh-cCCEEEEEeCCeEEEccChH
Q 000720 727 QRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS-QKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKYE 804 (1333)
Q Consensus 727 qRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~-~~TvIlvtH~~~~l~-~aD~i~vl~~G~i~~~g~~~ 804 (1333)
||++||||++.+|+++||||||++||+.+.+.+.+.+.+...+ +.|+|++||+++++. .||++++|++|++++.|+++
T Consensus 144 qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~ 223 (277)
T PRK13652 144 KRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVE 223 (277)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHH
Confidence 9999999999999999999999999999988777644333333 799999999999985 59999999999999999999
Q ss_pred HHHh
Q 000720 805 DLIA 808 (1333)
Q Consensus 805 ~l~~ 808 (1333)
++.+
T Consensus 224 ~~~~ 227 (277)
T PRK13652 224 EIFL 227 (277)
T ss_pred HHhc
Confidence 8875
No 251
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7e-34 Score=324.93 Aligned_cols=199 Identities=26% Similarity=0.411 Sum_probs=162.2
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC----------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g---------- 659 (1333)
++++|++++|+.+ .+.+++ ||++++||+++|+||||||||||+++|+|+++|.+|++ .++|
T Consensus 2 l~~~~l~~~~~~~-------~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i-~~~g~~~~~~~~~~ 73 (275)
T PRK13639 2 LETRDLKYSYPDG-------TEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEV-LIKGEPIKYDKKSL 73 (275)
T ss_pred EEEEEEEEEeCCC-------CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEE-EECCEECccccchH
Confidence 6799999999632 358999 99999999999999999999999999999999999986 5544
Q ss_pred -----eEEEEcCCC--CCCCCCHHHHhccCCc---CCH----HHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHH
Q 000720 660 -----KKAYVPQSS--WIQTGTIRENILFGKD---MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (1333)
Q Consensus 660 -----~iayv~Q~~--~i~~~Tv~enI~~g~~---~~~----~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQ 725 (1333)
.++|++|+| .+++.|++||+.++.. ... ++..+.++.+++. ......+.+|||||
T Consensus 74 ~~~~~~i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~-----------~~~~~~~~~LS~Gq 142 (275)
T PRK13639 74 LEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGME-----------GFENKPPHHLSGGQ 142 (275)
T ss_pred HHHHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc-----------hhhcCChhhCCHHH
Confidence 379999997 4677899999987532 111 1222333333332 12235678999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhh-cCCEEEEEeCCeEEEccChH
Q 000720 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKYE 804 (1333)
Q Consensus 726 kqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~-~aD~i~vl~~G~i~~~g~~~ 804 (1333)
|||++||||++.+|++++|||||++||+.++..+.+.+.+...+++|||++||+++.+. .||++++|++|++++.|+++
T Consensus 143 ~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 222 (275)
T PRK13639 143 KKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPK 222 (275)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999988887654433335899999999999986 59999999999999999999
Q ss_pred HHHh
Q 000720 805 DLIA 808 (1333)
Q Consensus 805 ~l~~ 808 (1333)
++..
T Consensus 223 ~~~~ 226 (275)
T PRK13639 223 EVFS 226 (275)
T ss_pred HHhc
Confidence 8865
No 252
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-33 Score=320.72 Aligned_cols=203 Identities=25% Similarity=0.355 Sum_probs=165.8
Q ss_pred ccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCc-----CCCCcEEEECC---
Q 000720 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP-----RISGAAIKVHG--- 659 (1333)
Q Consensus 589 ~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~-----~~~G~~i~~~g--- 659 (1333)
..++++|++++|+. .+.++| ||++++||+++|+||||||||||+++|+|+++ |++|++ .++|
T Consensus 19 ~~l~~~nl~~~~~~--------~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i-~~~g~~~ 89 (267)
T PRK14237 19 IALSTKDLHVYYGK--------KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQI-LYRGIDI 89 (267)
T ss_pred eEEEEeeEEEEECC--------eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEE-EECCEEc
Confidence 46999999999953 368999 99999999999999999999999999999986 478875 4443
Q ss_pred ------------eEEEEcCCCCCCCCCHHHHhccCCcC----CH----HHHHHHHHHcccchHHHhhcCCCccccCCCCC
Q 000720 660 ------------KKAYVPQSSWIQTGTIRENILFGKDM----RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGI 719 (1333)
Q Consensus 660 ------------~iayv~Q~~~i~~~Tv~enI~~g~~~----~~----~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~ 719 (1333)
.++|++|++.++..|++||+.++... ++ ++..++++.+++.+++. +..++.+.
T Consensus 90 ~~~~~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~-------~~~~~~~~ 162 (267)
T PRK14237 90 NRKEINVYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVK-------DDLHKSAL 162 (267)
T ss_pred ccccCChHHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhh-------hhhcCCcc
Confidence 47999999988888999999875321 11 12233344444432221 23457788
Q ss_pred CCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhh-cCCEEEEEeCCeEE
Q 000720 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMKDGKIE 798 (1333)
Q Consensus 720 ~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~-~aD~i~vl~~G~i~ 798 (1333)
+||||||||++||||++++|+++||||||++||+.+...+.+. ++.+.++.|+|++||+++.+. .||++++|++|+++
T Consensus 163 ~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~-l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~ 241 (267)
T PRK14237 163 TLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEET-MFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLI 241 (267)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH-HHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEE
Confidence 9999999999999999999999999999999999998877664 444556789999999999875 59999999999999
Q ss_pred EccChHHHHh
Q 000720 799 QSGKYEDLIA 808 (1333)
Q Consensus 799 ~~g~~~~l~~ 808 (1333)
+.|+++++..
T Consensus 242 ~~g~~~~~~~ 251 (267)
T PRK14237 242 EYDKTRNIFT 251 (267)
T ss_pred EeCCHHHHhc
Confidence 9999998865
No 253
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=7.9e-34 Score=315.23 Aligned_cols=198 Identities=25% Similarity=0.354 Sum_probs=158.5
Q ss_pred CccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC-------
Q 000720 588 DVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG------- 659 (1333)
Q Consensus 588 ~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g------- 659 (1333)
+..|+++|++++|+. .+.+++ ||++++||+++|+||||||||||+++|+|+.+|++|++ .++|
T Consensus 5 ~~~i~~~~l~~~~~~--------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~g~~~~~~~ 75 (225)
T PRK10247 5 SPLLQLQNVGYLAGD--------AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTL-LFEGEDISTLK 75 (225)
T ss_pred CceEEEeccEEeeCC--------ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeE-EECCEEcCcCC
Confidence 346999999999953 358999 99999999999999999999999999999999999986 5554
Q ss_pred ------eEEEEcCCCCCCCCCHHHHhccCCcCC-----HHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHH
Q 000720 660 ------KKAYVPQSSWIQTGTIRENILFGKDMR-----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQR 728 (1333)
Q Consensus 660 ------~iayv~Q~~~i~~~Tv~enI~~g~~~~-----~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqR 728 (1333)
.++|++|++.+++.|++||+.++..+. .++.++.++..++. .+..+.++.+||||||||
T Consensus 76 ~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~----------~~~~~~~~~~LS~G~~qr 145 (225)
T PRK10247 76 PEIYRQQVSYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALP----------DTILTKNIAELSGGEKQR 145 (225)
T ss_pred HHHHHhccEEEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCC----------hHHhcCCcccCCHHHHHH
Confidence 479999999888889999998743211 11222333333332 123456788999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEecCchhhhhcCCEEEEEe-CCeEEEccChH
Q 000720 729 IQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDAADLVLVMK-DGKIEQSGKYE 804 (1333)
Q Consensus 729 v~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~-~~~TvIlvtH~~~~l~~aD~i~vl~-~G~i~~~g~~~ 804 (1333)
++||||++++|+++||||||++||+.+.+.+.+.+.+... .++|+|++||++++++.||++++|+ ++..+++|+|+
T Consensus 146 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~~~~~~ 223 (225)
T PRK10247 146 ISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQEARYE 223 (225)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccchHhhhhhc
Confidence 9999999999999999999999999997777654433333 3789999999999988899999994 66666777764
No 254
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-33 Score=322.08 Aligned_cols=204 Identities=20% Similarity=0.349 Sum_probs=163.8
Q ss_pred ccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCc-----CCCCcEEEECC---
Q 000720 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP-----RISGAAIKVHG--- 659 (1333)
Q Consensus 589 ~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~-----~~~G~~i~~~g--- 659 (1333)
..++++|+++.|+. .+.+++ ||++++||+++|+|+||||||||+++|+|+.+ |++|++ .++|
T Consensus 23 ~~l~~~~l~~~~~~--------~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i-~~~g~~~ 93 (271)
T PRK14238 23 VVFDTQNLNLWYGE--------DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKI-LYRDQNI 93 (271)
T ss_pred eEEEEeeeEEEECC--------cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeE-EECCEEc
Confidence 36999999999963 257999 99999999999999999999999999999987 688976 4443
Q ss_pred ------------eEEEEcCCCCCCCCCHHHHhccCCcC----CHHHH----HHHHHHcccchHHHhhcCCCccccCCCCC
Q 000720 660 ------------KKAYVPQSSWIQTGTIRENILFGKDM----RQSFY----EEVLEGCALNQDIEMWADGDLSVVGERGI 719 (1333)
Q Consensus 660 ------------~iayv~Q~~~i~~~Tv~enI~~g~~~----~~~~~----~~v~~~~~l~~d~~~~~~g~~t~ig~~g~ 719 (1333)
.++|++|++.++..|++||+.++... ++... .+.++..++..++. ...++++.
T Consensus 94 ~~~~~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~-------~~~~~~~~ 166 (271)
T PRK14238 94 FDKSYSVEELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELK-------DRLHDNAY 166 (271)
T ss_pred ccccccHHHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHH-------HHHhcCcc
Confidence 47999999988878999999875321 11111 11222222211121 23456788
Q ss_pred CCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhh-cCCEEEEEeCCeEE
Q 000720 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMKDGKIE 798 (1333)
Q Consensus 720 ~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~-~aD~i~vl~~G~i~ 798 (1333)
+||||||||++||||++.+|+++||||||++||+.+.+.+.+ +++.+.+++|+|++||+++++. .||++++|++|+++
T Consensus 167 ~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~ 245 (271)
T PRK14238 167 GLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEE-LVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVN 245 (271)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHH-HHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999887766 4555556799999999999976 49999999999999
Q ss_pred EccChHHHHhh
Q 000720 799 QSGKYEDLIAD 809 (1333)
Q Consensus 799 ~~g~~~~l~~~ 809 (1333)
+.|+++++..+
T Consensus 246 ~~g~~~~~~~~ 256 (271)
T PRK14238 246 EYDDTDKIFSN 256 (271)
T ss_pred EeCCHHHHHcC
Confidence 99999988653
No 255
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=8.8e-34 Score=321.18 Aligned_cols=198 Identities=22% Similarity=0.346 Sum_probs=160.9
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC----------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g---------- 659 (1333)
++++|+++.|+. .+.+++ ||++++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 2 l~~~~l~~~~~~--------~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i-~~~g~~~~~~~~~~ 72 (256)
T TIGR03873 2 LRLSRVSWSAGG--------RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTV-DLAGVDLHGLSRRA 72 (256)
T ss_pred ceEEeEEEEECC--------EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEE-EECCEEcccCCHHH
Confidence 678999999963 368999 99999999999999999999999999999999999986 6654
Q ss_pred ---eEEEEcCCCC-CCCCCHHHHhccCCc-C------C-HH---HHHHHHHHcccchHHHhhcCCCccccCCCCCCCChH
Q 000720 660 ---KKAYVPQSSW-IQTGTIRENILFGKD-M------R-QS---FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGG 724 (1333)
Q Consensus 660 ---~iayv~Q~~~-i~~~Tv~enI~~g~~-~------~-~~---~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGG 724 (1333)
.++|++|++. .+..|++||+.++.. . . .+ +..+.++.+++. .....++.+||||
T Consensus 73 ~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G 141 (256)
T TIGR03873 73 RARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELS-----------HLADRDMSTLSGG 141 (256)
T ss_pred HhhheEEecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcH-----------hhhcCCcccCCHH
Confidence 3799999985 456899999987631 1 0 11 122223332221 2234677899999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhh-cCCEEEEEeCCeEEEccCh
Q 000720 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKY 803 (1333)
Q Consensus 725 QkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~-~aD~i~vl~~G~i~~~g~~ 803 (1333)
||||++||||++.+|+++||||||++||+.....+.+.+.+...+++|+|++||+++.+. .||+|++|++|++++.|+.
T Consensus 142 ~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~ 221 (256)
T TIGR03873 142 ERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPP 221 (256)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCH
Confidence 999999999999999999999999999999988777644333335789999999999985 5999999999999999999
Q ss_pred HHHHh
Q 000720 804 EDLIA 808 (1333)
Q Consensus 804 ~~l~~ 808 (1333)
+++..
T Consensus 222 ~~~~~ 226 (256)
T TIGR03873 222 REVLT 226 (256)
T ss_pred HHhhC
Confidence 88764
No 256
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=100.00 E-value=8.8e-34 Score=299.44 Aligned_cols=160 Identities=28% Similarity=0.453 Sum_probs=142.3
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC--eEEEEcCC
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--KKAYVPQS 667 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g--~iayv~Q~ 667 (1333)
|+++|++++|+.+ ++.+++ |+++++||+++|+||||||||||+++|+|+.+|++|++ .+++ +++|++|+
T Consensus 1 i~~~~~~~~~~~~-------~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~~~~~i~~~~q~ 72 (166)
T cd03223 1 IELENLSLATPDG-------RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRI-GMPEGEDLLFLPQR 72 (166)
T ss_pred CEEEEEEEEcCCC-------CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE-EECCCceEEEECCC
Confidence 4689999999632 358999 99999999999999999999999999999999999996 7765 79999999
Q ss_pred CCCCCCCHHHHhccCCcCCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCC
Q 000720 668 SWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDP 747 (1333)
Q Consensus 668 ~~i~~~Tv~enI~~g~~~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDEP 747 (1333)
+.+++.|++||+.++ ++.+||||||||++||||++++|+++|||||
T Consensus 73 ~~~~~~tv~~nl~~~----------------------------------~~~~LS~G~~~rv~laral~~~p~~lllDEP 118 (166)
T cd03223 73 PYLPLGTLREQLIYP----------------------------------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEA 118 (166)
T ss_pred CccccccHHHHhhcc----------------------------------CCCCCCHHHHHHHHHHHHHHcCCCEEEEECC
Confidence 988889999999763 2468999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhcCCEEEEEeCC
Q 000720 748 FSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDG 795 (1333)
Q Consensus 748 ~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~aD~i~vl~~G 795 (1333)
|++||+++.+.+.+. ++.. ++|+|++||+.+....||++++|++|
T Consensus 119 t~~LD~~~~~~l~~~-l~~~--~~tiiivsh~~~~~~~~d~i~~l~~~ 163 (166)
T cd03223 119 TSALDEESEDRLYQL-LKEL--GITVISVGHRPSLWKFHDRVLDLDGE 163 (166)
T ss_pred ccccCHHHHHHHHHH-HHHh--CCEEEEEeCChhHHhhCCEEEEEcCC
Confidence 999999998877764 3333 68999999999887779999999875
No 257
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=1.4e-33 Score=320.69 Aligned_cols=197 Identities=24% Similarity=0.345 Sum_probs=158.2
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCC---CcEEEECC------
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRIS---GAAIKVHG------ 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~---G~~i~~~g------ 659 (1333)
.++++|++++|+. .+.+++ ||++++||+++|+||||||||||+++|+|+++|++ |++ .++|
T Consensus 4 ~l~~~nl~~~~~~--------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i-~~~g~~~~~~ 74 (262)
T PRK09984 4 IIRVEKLAKTFNQ--------HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHI-ELLGRTVQRE 74 (262)
T ss_pred EEEEeeEEEEeCC--------eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEE-EECCEecccc
Confidence 5889999999963 358999 99999999999999999999999999999998864 765 4443
Q ss_pred ------------eEEEEcCCCCCCC-CCHHHHhccCCcC------------CH---HHHHHHHHHcccchHHHhhcCCCc
Q 000720 660 ------------KKAYVPQSSWIQT-GTIRENILFGKDM------------RQ---SFYEEVLEGCALNQDIEMWADGDL 711 (1333)
Q Consensus 660 ------------~iayv~Q~~~i~~-~Tv~enI~~g~~~------------~~---~~~~~v~~~~~l~~d~~~~~~g~~ 711 (1333)
+++|+||++.++. .|++||+.++... .+ .+.++.++..++.
T Consensus 75 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~----------- 143 (262)
T PRK09984 75 GRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMV----------- 143 (262)
T ss_pred cccchhHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCH-----------
Confidence 3799999987655 6999999876321 11 1122223222221
Q ss_pred cccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEecCchhhhh-cCCEE
Q 000720 712 SVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLD-AADLV 789 (1333)
Q Consensus 712 t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~-~~~TvIlvtH~~~~l~-~aD~i 789 (1333)
...+.++.+||||||||++||||++.+|+++||||||++||++..+.+.+.+.+... +++|+|++||+++.+. .||+|
T Consensus 144 ~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i 223 (262)
T PRK09984 144 HFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERI 223 (262)
T ss_pred HHHhCCccccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE
Confidence 123467789999999999999999999999999999999999998887765433333 3799999999999865 59999
Q ss_pred EEEeCCeEEEccChHHH
Q 000720 790 LVMKDGKIEQSGKYEDL 806 (1333)
Q Consensus 790 ~vl~~G~i~~~g~~~~l 806 (1333)
++|++|++++.|+++++
T Consensus 224 ~~l~~g~i~~~g~~~~~ 240 (262)
T PRK09984 224 VALRQGHVFYDGSSQQF 240 (262)
T ss_pred EEEECCEEEEeCCHHHh
Confidence 99999999999999886
No 258
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=1.1e-33 Score=313.89 Aligned_cols=195 Identities=24% Similarity=0.287 Sum_probs=159.6
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC---------e
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------K 660 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g---------~ 660 (1333)
++++|++++|+. .+.+++ ||++++||+++|+||||||||||+++|+|+++|++|++ .++| .
T Consensus 1 l~l~~v~~~~~~--------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~~~~~~~~~~~~ 71 (223)
T TIGR03740 1 LETKNLSKRFGK--------QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEI-IFDGHPWTRKDLHK 71 (223)
T ss_pred CEEEeEEEEECC--------EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEE-EECCEecccccccc
Confidence 468899999863 358999 99999999999999999999999999999999999986 6554 4
Q ss_pred EEEEcCCCCCC-CCCHHHHhccCCc---CCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHHc
Q 000720 661 KAYVPQSSWIQ-TGTIRENILFGKD---MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVY 736 (1333)
Q Consensus 661 iayv~Q~~~i~-~~Tv~enI~~g~~---~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~ 736 (1333)
++|++|++.++ ..|++||+.++.. .++.+..+.++..++.+. .+.++.+||||||||++||||++
T Consensus 72 ~~~~~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~~rv~laral~ 140 (223)
T TIGR03740 72 IGSLIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNT-----------GKKKAKQFSLGMKQRLGIAIALL 140 (223)
T ss_pred EEEEcCCCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHH-----------HhhhHhhCCHHHHHHHHHHHHHh
Confidence 79999998765 4799999976432 233344455555554322 23466799999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhh-cCCEEEEEeCCeEEEccChHH
Q 000720 737 SNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKYED 805 (1333)
Q Consensus 737 ~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~-~aD~i~vl~~G~i~~~g~~~~ 805 (1333)
.+|+++||||||++||+.+.+.+.+.+.+...+++|+|++||+++++. .||++++|++|++++.|++++
T Consensus 141 ~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 141 NHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred cCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChhh
Confidence 999999999999999999988776644433345789999999999985 599999999999999988654
No 259
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-33 Score=317.69 Aligned_cols=204 Identities=22% Similarity=0.342 Sum_probs=163.3
Q ss_pred ccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCc--C---CCCcEEEECC---
Q 000720 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP--R---ISGAAIKVHG--- 659 (1333)
Q Consensus 589 ~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~--~---~~G~~i~~~g--- 659 (1333)
+.++++|++++|+. .+.++| ||+|++||+++|+|+||||||||+++|+|+.+ | ++|++ .++|
T Consensus 3 ~~l~~~nl~~~~~~--------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v-~~~g~~i 73 (252)
T PRK14256 3 NKVKLEQLNVHFGK--------NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKI-LLDDTDI 73 (252)
T ss_pred cEEEEEEEEEEeCC--------eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEE-EECCEEc
Confidence 46899999999963 358999 99999999999999999999999999999986 3 57875 4433
Q ss_pred ------------eEEEEcCCCCCCC-CCHHHHhccCCc----CCH----HHHHHHHHHcccchHHHhhcCCCccccCCCC
Q 000720 660 ------------KKAYVPQSSWIQT-GTIRENILFGKD----MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERG 718 (1333)
Q Consensus 660 ------------~iayv~Q~~~i~~-~Tv~enI~~g~~----~~~----~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g 718 (1333)
.++|++|++.++. .|++||+.++.. .+. ++..+.++.+++...+. ...+..+
T Consensus 74 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~ 146 (252)
T PRK14256 74 YDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVK-------DRLKSNA 146 (252)
T ss_pred ccccCChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhh-------HHhhCCc
Confidence 3799999988765 699999986521 111 12233344444432221 1234568
Q ss_pred CCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhh-cCCEEEEEeCCeE
Q 000720 719 INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMKDGKI 797 (1333)
Q Consensus 719 ~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~-~aD~i~vl~~G~i 797 (1333)
.+||||||||++||||++.+|+++||||||++||+.+.+.+.+ +++.+.+++|+|++||+++++. .||++++|++|++
T Consensus 147 ~~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~-~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i 225 (252)
T PRK14256 147 MELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEE-LIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDL 225 (252)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH-HHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEE
Confidence 8999999999999999999999999999999999999887766 4555556789999999999985 5999999999999
Q ss_pred EEccChHHHHhh
Q 000720 798 EQSGKYEDLIAD 809 (1333)
Q Consensus 798 ~~~g~~~~l~~~ 809 (1333)
++.|+.+++..+
T Consensus 226 ~~~~~~~~~~~~ 237 (252)
T PRK14256 226 VECGETKKIFTT 237 (252)
T ss_pred EEeCCHHHHHhC
Confidence 999999988753
No 260
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-33 Score=317.99 Aligned_cols=202 Identities=24% Similarity=0.346 Sum_probs=162.6
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcC-----CCCcEEEECC----
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR-----ISGAAIKVHG---- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~-----~~G~~i~~~g---- 659 (1333)
.++++|+++.|+. .+.+++ ||++++||+++|+||||||||||+++|+|+.+| ++|++ .++|
T Consensus 3 ~l~~~~l~~~~~~--------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v-~~~g~~~~ 73 (249)
T PRK14253 3 KFNIENLDLFYGE--------NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKL-TMDGEDIY 73 (249)
T ss_pred eEEEeccEEEECC--------eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEE-EECCEEcc
Confidence 4789999999963 358999 999999999999999999999999999999886 48875 5443
Q ss_pred ----------eEEEEcCCCCCCCCCHHHHhccCCcC---C-HH----HHHHHHHHcccchHHHhhcCCCccccCCCCCCC
Q 000720 660 ----------KKAYVPQSSWIQTGTIRENILFGKDM---R-QS----FYEEVLEGCALNQDIEMWADGDLSVVGERGINL 721 (1333)
Q Consensus 660 ----------~iayv~Q~~~i~~~Tv~enI~~g~~~---~-~~----~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~L 721 (1333)
.++|++|++.++..|++||+.++... . +. +..+.++..++.+++. +..++.+.+|
T Consensus 74 ~~~~~~~~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~~~L 146 (249)
T PRK14253 74 GNIDVADLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVK-------DRLKSHAFGL 146 (249)
T ss_pred cccchHHHHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhh-------HHhhcCcccC
Confidence 37999999988779999999876321 1 11 1122233333332221 2345678899
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeCCeEEEc
Q 000720 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQS 800 (1333)
Q Consensus 722 SGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~~ 800 (1333)
|||||||++||||++.+|+++||||||++||+.+.+.+.+ +++.+.+++|+|++||+++.+.. ||++++|++|++++.
T Consensus 147 S~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~-~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~ 225 (249)
T PRK14253 147 SGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEE-LMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEH 225 (249)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHH-HHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999877765 55555557899999999999765 999999999999999
Q ss_pred cChHHHHh
Q 000720 801 GKYEDLIA 808 (1333)
Q Consensus 801 g~~~~l~~ 808 (1333)
|+.+++.+
T Consensus 226 g~~~~~~~ 233 (249)
T PRK14253 226 DDTQVIFS 233 (249)
T ss_pred CCHHHHHc
Confidence 99888754
No 261
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.4e-33 Score=312.99 Aligned_cols=196 Identities=26% Similarity=0.397 Sum_probs=159.2
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC----------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g---------- 659 (1333)
++++|++++|+.. + .+ ||++++||+++|+||||||||||+++|+|+.+|++|++ .++|
T Consensus 2 l~~~~l~~~~~~~--------~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i-~~~g~~~~~~~~~~ 70 (232)
T PRK10771 2 LKLTDITWLYHHL--------P--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSL-TLNGQDHTTTPPSR 70 (232)
T ss_pred eEEEEEEEEECCc--------c--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE-EECCeecCcCChhh
Confidence 6799999999632 1 27 99999999999999999999999999999999999986 5554
Q ss_pred -eEEEEcCCCCCCC-CCHHHHhccCCcC----CH---HHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHH
Q 000720 660 -KKAYVPQSSWIQT-GTIRENILFGKDM----RQ---SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQ 730 (1333)
Q Consensus 660 -~iayv~Q~~~i~~-~Tv~enI~~g~~~----~~---~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~ 730 (1333)
.++|++|++.++. .|++||+.++... .+ ++..+.++..++. ..++..+.+||||||||++
T Consensus 71 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G~~qrv~ 139 (232)
T PRK10771 71 RPVSMLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIE-----------DLLARLPGQLSGGQRQRVA 139 (232)
T ss_pred ccEEEEecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcH-----------HHHhCCcccCCHHHHHHHH
Confidence 3799999987765 5999999875311 11 1223333333332 2234567799999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEecCchhhhhc-CCEEEEEeCCeEEEccChHHHHh
Q 000720 731 LARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDLIA 808 (1333)
Q Consensus 731 LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~-~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~~g~~~~l~~ 808 (1333)
||||++++|+++||||||++||+.+++.+.+.+.+... .++|+|++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus 140 laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~ 219 (232)
T PRK10771 140 LARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLS 219 (232)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999998877765443333 37899999999999865 99999999999999999988875
No 262
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=1.2e-33 Score=313.37 Aligned_cols=190 Identities=23% Similarity=0.288 Sum_probs=152.4
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC----------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g---------- 659 (1333)
++++|+++.|+.+ .+.+++ ||++++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 2 l~~~~l~~~~~~~-------~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~g~~i~~~~~~~ 73 (222)
T PRK10908 2 IRFEHVSKAYLGG-------RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKI-WFSGHDITRLKNRE 73 (222)
T ss_pred EEEEeeEEEecCC-------CeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE-EECCEEcccCChhH
Confidence 6789999999532 358999 99999999999999999999999999999999999986 5543
Q ss_pred ------eEEEEcCCCCC-CCCCHHHHhccCCc---CCHH----HHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHH
Q 000720 660 ------KKAYVPQSSWI-QTGTIRENILFGKD---MRQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (1333)
Q Consensus 660 ------~iayv~Q~~~i-~~~Tv~enI~~g~~---~~~~----~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQ 725 (1333)
.++|++|+|.+ ++.|++||+.++.. .+.. +.++.++..++.+ ...+.+.+|||||
T Consensus 74 ~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~ 142 (222)
T PRK10908 74 VPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLD-----------KAKNFPIQLSGGE 142 (222)
T ss_pred HHHHHhheEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChh-----------hhhCCchhCCHHH
Confidence 37999999875 57899999987532 1111 1122233222221 2345678999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeCCeEEE
Q 000720 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQ 799 (1333)
Q Consensus 726 kqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~ 799 (1333)
|||++||||++.+|+++||||||++||+.+.+.+.+.+.+...+++|+|++||+++++.. ||+|++|++|+++.
T Consensus 143 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 143 QQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence 999999999999999999999999999999887776443333457899999999999875 99999999999863
No 263
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=100.00 E-value=8.3e-34 Score=302.00 Aligned_cols=159 Identities=34% Similarity=0.554 Sum_probs=141.5
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC----------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g---------- 659 (1333)
++++|++++|+.. ..+.+++ |+++++||+++|+||||||||||+++|+|+.+|++|++ .++|
T Consensus 1 i~~~~l~~~~~~~------~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i-~~~g~~~~~~~~~~ 73 (173)
T cd03246 1 LEVENVSFRYPGA------EPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRV-RLDGADISQWDPNE 73 (173)
T ss_pred CEEEEEEEEcCCC------CCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeE-EECCEEcccCCHHH
Confidence 4689999999743 2468999 99999999999999999999999999999999999986 5554
Q ss_pred ---eEEEEcCCCCCCCCCHHHHhccCCcCCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHHc
Q 000720 660 ---KKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVY 736 (1333)
Q Consensus 660 ---~iayv~Q~~~i~~~Tv~enI~~g~~~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~ 736 (1333)
+++|++|++++++.|++||+ ||||||||++||||++
T Consensus 74 ~~~~i~~~~q~~~~~~~tv~~~l-----------------------------------------LS~G~~qrv~la~al~ 112 (173)
T cd03246 74 LGDHVGYLPQDDELFSGSIAENI-----------------------------------------LSGGQRQRLGLARALY 112 (173)
T ss_pred HHhheEEECCCCccccCcHHHHC-----------------------------------------cCHHHHHHHHHHHHHh
Confidence 47999999998888999998 9999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhcCCEEEEEeCCeE
Q 000720 737 SNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKI 797 (1333)
Q Consensus 737 ~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~aD~i~vl~~G~i 797 (1333)
++|+++||||||++||+++.+.+.+.+.+...+++|+|++||+++.+..||++++|++|++
T Consensus 113 ~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i 173 (173)
T cd03246 113 GNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173 (173)
T ss_pred cCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEEECCCC
Confidence 9999999999999999999888876544333458899999999998888999999999974
No 264
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-33 Score=318.12 Aligned_cols=202 Identities=29% Similarity=0.400 Sum_probs=162.0
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcC-----CCCcEEEECC----
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR-----ISGAAIKVHG---- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~-----~~G~~i~~~g---- 659 (1333)
.++++|+++.|++ .+.+++ ||++++||+++|+||||||||||+++|+|+.+| ++|++ .++|
T Consensus 3 ~l~~~~l~~~~~~--------~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i-~i~g~~~~ 73 (250)
T PRK14262 3 IIEIENFSAYYGE--------KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKI-YFKGQDIY 73 (250)
T ss_pred eEEEEeeEEEeCC--------ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEE-EECCEEcc
Confidence 4889999999963 357999 999999999999999999999999999999874 78875 4433
Q ss_pred -----------eEEEEcCCCCCCCCCHHHHhccCCcC----CHHHH----HHHHHHcccchHHHhhcCCCccccCCCCCC
Q 000720 660 -----------KKAYVPQSSWIQTGTIRENILFGKDM----RQSFY----EEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1333)
Q Consensus 660 -----------~iayv~Q~~~i~~~Tv~enI~~g~~~----~~~~~----~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~ 720 (1333)
.++|++|++.++..|++||+.++... ..... ++.++..++.+++. +..++++.+
T Consensus 74 ~~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~ 146 (250)
T PRK14262 74 DPQLDVTEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVK-------SELNKPGTR 146 (250)
T ss_pred cchhhHHHhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhH-------HHHhCChhh
Confidence 48999999988789999999875321 11111 22222223322211 224567889
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhh-cCCEEEEEeCCeEEE
Q 000720 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQ 799 (1333)
Q Consensus 721 LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~-~aD~i~vl~~G~i~~ 799 (1333)
||||||||++||||++.+|+++||||||++||+.+...+.+ +++...+++|+|++||+++.+. .||++++|++|+++.
T Consensus 147 LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~-~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~ 225 (250)
T PRK14262 147 LSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEK-LLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIE 225 (250)
T ss_pred cCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHH-HHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999887765 4555556789999999999865 599999999999999
Q ss_pred ccChHHHHh
Q 000720 800 SGKYEDLIA 808 (1333)
Q Consensus 800 ~g~~~~l~~ 808 (1333)
.|+++++.+
T Consensus 226 ~g~~~~~~~ 234 (250)
T PRK14262 226 YGPTREIVE 234 (250)
T ss_pred ecCHHHHHh
Confidence 999988865
No 265
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=8.6e-34 Score=312.49 Aligned_cols=187 Identities=32% Similarity=0.366 Sum_probs=150.6
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC----------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g---------- 659 (1333)
++++|++++|+. .+.+++ ||++++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 1 l~~~~l~~~~~~--------~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~g~~~~~~~~~~ 71 (213)
T cd03262 1 IEIKNLHKSFGD--------FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTI-IIDGLKLTDDKKNI 71 (213)
T ss_pred CEEEEEEEEECC--------eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE-EECCEECCccchhH
Confidence 468899999964 358999 99999999999999999999999999999999999986 5544
Q ss_pred -----eEEEEcCCCCCCC-CCHHHHhccCCc----CCHH----HHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHH
Q 000720 660 -----KKAYVPQSSWIQT-GTIRENILFGKD----MRQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (1333)
Q Consensus 660 -----~iayv~Q~~~i~~-~Tv~enI~~g~~----~~~~----~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQ 725 (1333)
.++|++|++.++. .|++||+.++.. .+.+ +.++.++.+++ ......++.+|||||
T Consensus 72 ~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LS~G~ 140 (213)
T cd03262 72 NELRQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGL-----------ADKADAYPAQLSGGQ 140 (213)
T ss_pred HHHHhcceEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCC-----------HhHhhhCccccCHHH
Confidence 3799999998764 799999987531 1211 12222333322 223446778999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeCCeE
Q 000720 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKI 797 (1333)
Q Consensus 726 kqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i 797 (1333)
|||++||||++++|+++||||||++||+.+.+.+.+.+.+...+++|+|++||+++.+.. ||++++|++|++
T Consensus 141 ~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 141 QQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999999887776544333457999999999999865 999999999974
No 266
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-33 Score=318.72 Aligned_cols=193 Identities=26% Similarity=0.407 Sum_probs=156.0
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC--------eE
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------KK 661 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g--------~i 661 (1333)
++++|+++.|+. .+.++| ||++++||+++|+||||||||||+++|+|+.+|++|++ .++| ++
T Consensus 2 l~~~~l~~~~~~--------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i-~~~g~~~~~~~~~~ 72 (255)
T PRK11248 2 LQISHLYADYGG--------KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSI-TLDGKPVEGPGAER 72 (255)
T ss_pred EEEEEEEEEeCC--------eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEE-EECCEECCCCCCcE
Confidence 678999999853 358999 99999999999999999999999999999999999986 6655 37
Q ss_pred EEEcCCCCCCC-CCHHHHhccCCc---CCH----HHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHH
Q 000720 662 AYVPQSSWIQT-GTIRENILFGKD---MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLAR 733 (1333)
Q Consensus 662 ayv~Q~~~i~~-~Tv~enI~~g~~---~~~----~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LAR 733 (1333)
+|++|++.++. .|++||+.++.. ... ++..+.++..++. .....++.+||||||||++|||
T Consensus 73 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~-----------~~~~~~~~~LSgGq~qrl~lar 141 (255)
T PRK11248 73 GVVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLE-----------GAEKRYIWQLSGGQRQRVGIAR 141 (255)
T ss_pred EEEeCCCccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCh-----------hHhhCChhhCCHHHHHHHHHHH
Confidence 99999987665 699999987532 111 1223333433332 1233567899999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEecCchhhhhc-CCEEEEEe--CCeEEEccCh
Q 000720 734 AVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA-ADLVLVMK--DGKIEQSGKY 803 (1333)
Q Consensus 734 Al~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~-~~~TvIlvtH~~~~l~~-aD~i~vl~--~G~i~~~g~~ 803 (1333)
|++.+|+++||||||++||+.+.+.+.+.+.+... +++|+|++||+++.+.. ||+|++|+ +|++++.++.
T Consensus 142 al~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 142 ALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPL 215 (255)
T ss_pred HHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecC
Confidence 99999999999999999999998887765433323 47999999999999865 99999998 5999987654
No 267
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-33 Score=318.18 Aligned_cols=202 Identities=26% Similarity=0.356 Sum_probs=162.3
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcC-----CCCcEEEECC----
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR-----ISGAAIKVHG---- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~-----~~G~~i~~~g---- 659 (1333)
.|+++|++++|+. ...|+| ||++++||+++|+||||||||||+++|+|+.++ ++|++ .++|
T Consensus 6 ~i~~~~l~~~~~~--------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i-~~~g~~~~ 76 (253)
T PRK14261 6 ILSTKNLNLWYGE--------KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDI-LYNGENIM 76 (253)
T ss_pred eEEEeeeEEEECC--------eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEE-EECCEEcc
Confidence 5899999999963 358999 999999999999999999999999999998753 47875 4432
Q ss_pred -----------eEEEEcCCCCCCCCCHHHHhccCCcCC----HH----HHHHHHHHcccchHHHhhcCCCccccCCCCCC
Q 000720 660 -----------KKAYVPQSSWIQTGTIRENILFGKDMR----QS----FYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1333)
Q Consensus 660 -----------~iayv~Q~~~i~~~Tv~enI~~g~~~~----~~----~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~ 720 (1333)
.++|++|++.+++.|++||+.++.... .. +..+.++..++.+++ .+..++.+.+
T Consensus 77 ~~~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~ 149 (253)
T PRK14261 77 DSGADVVALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEV-------KDRLHDSALS 149 (253)
T ss_pred ccccchhhhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhh-------HHHhhcChhh
Confidence 479999999888789999999864321 11 111222222232221 1235678899
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhh-cCCEEEEEeCCeEEE
Q 000720 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQ 799 (1333)
Q Consensus 721 LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~-~aD~i~vl~~G~i~~ 799 (1333)
||||||||++||||++.+|+++||||||++||+.+.+.+.+ +++.+.+++|+|++||+++.+. .||++++|++|++++
T Consensus 150 LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~-~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~ 228 (253)
T PRK14261 150 LSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIED-LIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIE 228 (253)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999887765 4555555789999999999986 499999999999999
Q ss_pred ccChHHHHh
Q 000720 800 SGKYEDLIA 808 (1333)
Q Consensus 800 ~g~~~~l~~ 808 (1333)
.|+.+++..
T Consensus 229 ~g~~~~~~~ 237 (253)
T PRK14261 229 FDKTTQIFE 237 (253)
T ss_pred cCCHHHHHh
Confidence 999988865
No 268
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.5e-33 Score=326.48 Aligned_cols=217 Identities=20% Similarity=0.279 Sum_probs=168.2
Q ss_pred ccEEEeeeEEEcCCccccc--CCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC------
Q 000720 589 VAIDIEAGEYAWDAREENF--KKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG------ 659 (1333)
Q Consensus 589 ~~I~i~~~~fsw~~~~~~~--~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g------ 659 (1333)
..++++|.+++|+...... ......+++ ||+|++||+++|+|+||||||||+++|+|+++|++|++ .++|
T Consensus 4 ~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i-~~~g~~l~~~ 82 (327)
T PRK11308 4 PLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGEL-YYQGQDLLKA 82 (327)
T ss_pred ceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEE-EECCEEcCcC
Confidence 3589999999997431000 012467999 99999999999999999999999999999999999986 5543
Q ss_pred ----------eEEEEcCCCC--C-CCCCHHHHhccCC----cCCH----HHHHHHHHHcccchHHHhhcCCCccccCCCC
Q 000720 660 ----------KKAYVPQSSW--I-QTGTIRENILFGK----DMRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERG 718 (1333)
Q Consensus 660 ----------~iayv~Q~~~--i-~~~Tv~enI~~g~----~~~~----~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g 718 (1333)
+++|++|+|. + +..|+.+|+..+. ...+ ++..+.++.+++..+ ..+..+
T Consensus 83 ~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~----------~~~~~p 152 (327)
T PRK11308 83 DPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPE----------HYDRYP 152 (327)
T ss_pred CHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChH----------HhcCCC
Confidence 4899999983 3 3469999986421 1121 222334444444211 234678
Q ss_pred CCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEecCchhhhhc-CCEEEEEeCCe
Q 000720 719 INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA-ADLVLVMKDGK 796 (1333)
Q Consensus 719 ~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~-~~~TvIlvtH~~~~l~~-aD~i~vl~~G~ 796 (1333)
.+||||||||++|||||+.+|+++|+||||++||+.++.++++.+.+... .+.|+|+||||++.+.. ||+|++|++|+
T Consensus 153 ~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~ 232 (327)
T PRK11308 153 HMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGR 232 (327)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 89999999999999999999999999999999999999988875544333 37899999999999875 99999999999
Q ss_pred EEEccChHHHHhhcchHHHH
Q 000720 797 IEQSGKYEDLIADQNSELVR 816 (1333)
Q Consensus 797 i~~~g~~~~l~~~~~~~~~~ 816 (1333)
|++.|+.+++.++....+.+
T Consensus 233 ive~g~~~~~~~~p~hpyt~ 252 (327)
T PRK11308 233 CVEKGTKEQIFNNPRHPYTQ 252 (327)
T ss_pred EEEECCHHHHhcCCCCHHHH
Confidence 99999999998754444443
No 269
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.5e-33 Score=320.01 Aligned_cols=204 Identities=27% Similarity=0.407 Sum_probs=164.3
Q ss_pred CccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcC-----CCCcEEEECC--
Q 000720 588 DVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR-----ISGAAIKVHG-- 659 (1333)
Q Consensus 588 ~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~-----~~G~~i~~~g-- 659 (1333)
...++++|++++|+. .+.+++ ||++++||+++|+||||||||||+++|+|+.++ ++|++ .++|
T Consensus 23 ~~~l~~~nl~~~~~~--------~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i-~i~g~~ 93 (272)
T PRK14236 23 QTALEVRNLNLFYGD--------KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEI-RLDGQN 93 (272)
T ss_pred CcEEEEEEEEEEECC--------eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEE-EECCEE
Confidence 446999999999953 258999 999999999999999999999999999999874 78975 4432
Q ss_pred -------------eEEEEcCCCCCCCCCHHHHhccCCcCC----H----HHHHHHHHHcccchHHHhhcCCCccccCCCC
Q 000720 660 -------------KKAYVPQSSWIQTGTIRENILFGKDMR----Q----SFYEEVLEGCALNQDIEMWADGDLSVVGERG 718 (1333)
Q Consensus 660 -------------~iayv~Q~~~i~~~Tv~enI~~g~~~~----~----~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g 718 (1333)
.++|++|++.+++.|++||+.++.... + ++.++.++..++.+++. +..++++
T Consensus 94 i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~ 166 (272)
T PRK14236 94 IYDKKVDVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVK-------DRLHENA 166 (272)
T ss_pred CcccccCHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHH-------HHhhCCc
Confidence 479999999888789999998753211 1 11223333333332221 2345778
Q ss_pred CCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhh-cCCEEEEEeCCeE
Q 000720 719 INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMKDGKI 797 (1333)
Q Consensus 719 ~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~-~aD~i~vl~~G~i 797 (1333)
.+||||||||++||||++++|+++||||||++||+.+...+.+ +++.+.+++|+|++||+++++. .||++++|++|++
T Consensus 167 ~~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~-~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i 245 (272)
T PRK14236 167 FGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEE-LITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKL 245 (272)
T ss_pred ccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999998777765 4444455789999999999875 5999999999999
Q ss_pred EEccChHHHHh
Q 000720 798 EQSGKYEDLIA 808 (1333)
Q Consensus 798 ~~~g~~~~l~~ 808 (1333)
++.|+++++.+
T Consensus 246 ~~~g~~~~~~~ 256 (272)
T PRK14236 246 VEYGDTDTLFT 256 (272)
T ss_pred EecCCHHHHhc
Confidence 99999988865
No 270
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.7e-33 Score=321.17 Aligned_cols=204 Identities=25% Similarity=0.383 Sum_probs=162.9
Q ss_pred CccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCc-----CCCCcEEEECC--
Q 000720 588 DVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP-----RISGAAIKVHG-- 659 (1333)
Q Consensus 588 ~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~-----~~~G~~i~~~g-- 659 (1333)
+..++++|++++|+. .+.+++ ||+|++||+++|+||||||||||+++|+|+++ |++|++ .++|
T Consensus 37 ~~~l~i~~l~~~~~~--------~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I-~i~G~~ 107 (285)
T PRK14254 37 ETVIEARDLNVFYGD--------EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGEL-TFRGKN 107 (285)
T ss_pred CceEEEEEEEEEECC--------EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEE-EECCEE
Confidence 446999999999963 358999 99999999999999999999999999999987 578975 4433
Q ss_pred -------------eEEEEcCCCCCCCCCHHHHhccCCcC---C---HHHHHHHHHHcccchHHHhhcCCCccccCCCCCC
Q 000720 660 -------------KKAYVPQSSWIQTGTIRENILFGKDM---R---QSFYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1333)
Q Consensus 660 -------------~iayv~Q~~~i~~~Tv~enI~~g~~~---~---~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~ 720 (1333)
+++|++|++.++..|++||+.++... . .++.++.++..++...+. ...++++.+
T Consensus 108 i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~-------~~~~~~~~~ 180 (285)
T PRK14254 108 VYDADVDPVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVK-------DQLDSSGLD 180 (285)
T ss_pred ccccccchHhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhH-------HHHhCCccc
Confidence 47999999988778999999875321 1 122233333333322221 123567889
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEE-EEeCCeEE
Q 000720 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVL-VMKDGKIE 798 (1333)
Q Consensus 721 LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~-vl~~G~i~ 798 (1333)
||||||||++||||++++|+++||||||++||+.+.+.+.+ .++.+.+++|+|++||+++++.. ||+++ +|++|+|+
T Consensus 181 LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~-~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~ 259 (285)
T PRK14254 181 LSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIED-LIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELV 259 (285)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEE
Confidence 99999999999999999999999999999999999887765 45555456899999999999865 99975 57999999
Q ss_pred EccChHHHHh
Q 000720 799 QSGKYEDLIA 808 (1333)
Q Consensus 799 ~~g~~~~l~~ 808 (1333)
+.|+++++..
T Consensus 260 ~~g~~~~~~~ 269 (285)
T PRK14254 260 EFDDTDKIFE 269 (285)
T ss_pred EeCCHHHHHh
Confidence 9999888765
No 271
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-33 Score=331.92 Aligned_cols=198 Identities=22% Similarity=0.379 Sum_probs=160.2
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC----------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g---------- 659 (1333)
+++ |.+++|... .+ + ||++++||+++|+||||||||||+++|+|+.+|++|++ .++|
T Consensus 2 l~~-~l~k~~~~~---------~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I-~~~g~~~~~~~~~~ 69 (352)
T PRK11144 2 LEL-NFKQQLGDL---------CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRI-VLNGRVLFDAEKGI 69 (352)
T ss_pred eEE-EEEEEeCCE---------EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE-EECCEEcccccccc
Confidence 345 777777532 12 7 99999999999999999999999999999999999986 4433
Q ss_pred -------eEEEEcCCCCCC-CCCHHHHhccCCc-CCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHH
Q 000720 660 -------KKAYVPQSSWIQ-TGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQ 730 (1333)
Q Consensus 660 -------~iayv~Q~~~i~-~~Tv~enI~~g~~-~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~ 730 (1333)
+++|++|++.++ ..|++||+.++.. ...++.+++++..++.+ ..++++.+||||||||++
T Consensus 70 ~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~~~~LSgGq~qRva 138 (352)
T PRK11144 70 CLPPEKRRIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEP-----------LLDRYPGSLSGGEKQRVA 138 (352)
T ss_pred ccchhhCCEEEEcCCcccCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCch-----------hhhCCcccCCHHHHHHHH
Confidence 479999999876 4799999998743 22334445555554432 234567899999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEecCchhhhhc-CCEEEEEeCCeEEEccChHHHHh
Q 000720 731 LARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS-QKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDLIA 808 (1333)
Q Consensus 731 LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~-~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~~g~~~~l~~ 808 (1333)
||||++.+|+++||||||++||+..++.+.+.+.+...+ ++|+|+||||++++.. ||++++|++|++++.|+++++..
T Consensus 139 laraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~ 218 (352)
T PRK11144 139 IGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWA 218 (352)
T ss_pred HHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHh
Confidence 999999999999999999999999988887654433333 7899999999998754 99999999999999999999987
Q ss_pred hcc
Q 000720 809 DQN 811 (1333)
Q Consensus 809 ~~~ 811 (1333)
++.
T Consensus 219 ~p~ 221 (352)
T PRK11144 219 SSA 221 (352)
T ss_pred Ccc
Confidence 443
No 272
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=1.5e-33 Score=316.99 Aligned_cols=198 Identities=21% Similarity=0.208 Sum_probs=154.8
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCC--cCCCCcEEEECC--------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEI--PRISGAAIKVHG-------- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~--~~~~G~~i~~~g-------- 659 (1333)
++++|++++|+. .+.+++ ||++++||+++|+||||||||||+++|+|+. +|++|++ .++|
T Consensus 1 l~~~~l~~~~~~--------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i-~~~g~~~~~~~~ 71 (243)
T TIGR01978 1 LKIKDLHVSVED--------KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTI-LFKGQDLLELEP 71 (243)
T ss_pred CeEeeEEEEECC--------EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceE-EECCEecCCCCH
Confidence 468999999963 358999 9999999999999999999999999999995 7899986 5554
Q ss_pred ------eEEEEcCCCCCCC-CCHHHHhccCCcC----------CH----HHHHHHHHHcccchHHHhhcCCCccccCCCC
Q 000720 660 ------KKAYVPQSSWIQT-GTIRENILFGKDM----------RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERG 718 (1333)
Q Consensus 660 ------~iayv~Q~~~i~~-~Tv~enI~~g~~~----------~~----~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g 718 (1333)
.++|++|++.++. .|++||+.+.... +. ++..+.++..++..+ ..+.+.
T Consensus 72 ~~~~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~ 141 (243)
T TIGR01978 72 DERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEE----------FLNRSV 141 (243)
T ss_pred HHhhccceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchh----------hccccc
Confidence 2689999987654 5999999764211 11 111222222222211 122344
Q ss_pred C-CCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc--CCEEEEEeCC
Q 000720 719 I-NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA--ADLVLVMKDG 795 (1333)
Q Consensus 719 ~-~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~--aD~i~vl~~G 795 (1333)
. +||||||||++||||++.+|+++||||||++||+.+.+.+.+.+.+...+++|||++||+++.+.. ||++++|++|
T Consensus 142 ~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G 221 (243)
T TIGR01978 142 NEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDG 221 (243)
T ss_pred ccCcCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCC
Confidence 4 599999999999999999999999999999999999888776544333457999999999999864 7999999999
Q ss_pred eEEEccChHHHH
Q 000720 796 KIEQSGKYEDLI 807 (1333)
Q Consensus 796 ~i~~~g~~~~l~ 807 (1333)
++++.|+++++.
T Consensus 222 ~i~~~g~~~~~~ 233 (243)
T TIGR01978 222 RIVKSGDVELAK 233 (243)
T ss_pred EEEEecCHHHhc
Confidence 999999887553
No 273
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-33 Score=318.24 Aligned_cols=202 Identities=22% Similarity=0.356 Sum_probs=161.1
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCc-----CCCCcEEEECC-----
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP-----RISGAAIKVHG----- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~-----~~~G~~i~~~g----- 659 (1333)
-+++|+++.|+. .+.+++ ||++++||+++|+|+||||||||+++|+|+.+ |++|++ .++|
T Consensus 6 ~~~~~l~~~~~~--------~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i-~~~g~~i~~ 76 (251)
T PRK14244 6 ASVKNLNLWYGS--------KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGEL-DIDGIDVYS 76 (251)
T ss_pred EEeeeEEEEECC--------eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEE-EECCEehHh
Confidence 467899999853 368999 99999999999999999999999999999986 468875 5443
Q ss_pred ----------eEEEEcCCCCCCCCCHHHHhccCCcC-----CHHH----HHHHHHHcccchHHHhhcCCCccccCCCCCC
Q 000720 660 ----------KKAYVPQSSWIQTGTIRENILFGKDM-----RQSF----YEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1333)
Q Consensus 660 ----------~iayv~Q~~~i~~~Tv~enI~~g~~~-----~~~~----~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~ 720 (1333)
.++|++|++.++..|++||+.++... +... ..+.++..++.+++. +.++..+.+
T Consensus 77 ~~~~~~~~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~ 149 (251)
T PRK14244 77 VDTNVVLLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELG-------DRLKDSAFE 149 (251)
T ss_pred cccchHHHhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhh-------hHhhcChhh
Confidence 47999999988878999999875321 1111 122333333322111 234567889
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeCCeEEE
Q 000720 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQ 799 (1333)
Q Consensus 721 LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~ 799 (1333)
||||||||++||||++.+|+++||||||++||+.+.+.+.+ .++.+.+++|+|++||+++++.. ||++++|++|++++
T Consensus 150 LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~ 228 (251)
T PRK14244 150 LSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIEN-LIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVE 228 (251)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHH-HHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEE
Confidence 99999999999999999999999999999999998877765 45555568999999999999864 99999999999999
Q ss_pred ccChHHHHhh
Q 000720 800 SGKYEDLIAD 809 (1333)
Q Consensus 800 ~g~~~~l~~~ 809 (1333)
.|+++++.++
T Consensus 229 ~~~~~~~~~~ 238 (251)
T PRK14244 229 YNTTQEIFKN 238 (251)
T ss_pred eCCHHHHhcC
Confidence 9999888753
No 274
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-33 Score=322.23 Aligned_cols=205 Identities=21% Similarity=0.331 Sum_probs=163.0
Q ss_pred CccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCc-----CCCCcEEEECC--
Q 000720 588 DVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP-----RISGAAIKVHG-- 659 (1333)
Q Consensus 588 ~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~-----~~~G~~i~~~g-- 659 (1333)
+..++++|++++|+.. +.++| ||+|++||+++|+||||||||||+++|+|+.+ |++|++ .++|
T Consensus 37 ~~~l~~~~l~~~~~~~--------~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I-~~~g~~ 107 (286)
T PRK14275 37 KPHVVAKNFSIYYGEF--------EAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGAL-MFDGED 107 (286)
T ss_pred ceEEEEeeeEEEECCE--------EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEE-EECCEE
Confidence 4468999999999632 58999 99999999999999999999999999999854 488875 4433
Q ss_pred -------------eEEEEcCCCCCCCCCHHHHhccCCcC----CHH----HHHHHHHHcccchHHHhhcCCCccccCCCC
Q 000720 660 -------------KKAYVPQSSWIQTGTIRENILFGKDM----RQS----FYEEVLEGCALNQDIEMWADGDLSVVGERG 718 (1333)
Q Consensus 660 -------------~iayv~Q~~~i~~~Tv~enI~~g~~~----~~~----~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g 718 (1333)
.++|++|++.++..|++||+.++... ... +..+.++..++...+. ...++++
T Consensus 108 i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~ 180 (286)
T PRK14275 108 IYGKFTDEVLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVS-------DRLDKNA 180 (286)
T ss_pred hhhcccchHHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchh-------hHhhCCh
Confidence 47999999988778999999886421 111 1112222222221111 1235678
Q ss_pred CCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeCCeE
Q 000720 719 INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKI 797 (1333)
Q Consensus 719 ~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i 797 (1333)
.+||||||||++||||++.+|+++||||||++||+.+.+.+.+ +++.+.+++|||++||+++++.. ||++++|++|++
T Consensus 181 ~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~-~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i 259 (286)
T PRK14275 181 LGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIED-LIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVL 259 (286)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHH-HHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 8999999999999999999999999999999999999887776 45555557899999999999864 999999999999
Q ss_pred EEccChHHHHhh
Q 000720 798 EQSGKYEDLIAD 809 (1333)
Q Consensus 798 ~~~g~~~~l~~~ 809 (1333)
++.|+++++.++
T Consensus 260 ~~~g~~~~~~~~ 271 (286)
T PRK14275 260 VEHAPTAQLFTN 271 (286)
T ss_pred EEeCCHHHHHhC
Confidence 999999988653
No 275
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.2e-33 Score=318.09 Aligned_cols=204 Identities=24% Similarity=0.367 Sum_probs=165.5
Q ss_pred CccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcC-----CCCcEEEEC---
Q 000720 588 DVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR-----ISGAAIKVH--- 658 (1333)
Q Consensus 588 ~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~-----~~G~~i~~~--- 658 (1333)
...|+++|++++|+. .+.+++ ||++++||+++|+|+||||||||+++|+|+.+| ++|++ .++
T Consensus 14 ~~~l~~~~l~~~~~~--------~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i-~~~g~~ 84 (265)
T PRK14252 14 QQKSEVNKLNFYYGG--------YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEI-ILHPDN 84 (265)
T ss_pred CceEEEEEEEEEECC--------eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEE-EEcCcc
Confidence 346999999999963 258999 999999999999999999999999999999875 67875 442
Q ss_pred --------------CeEEEEcCCCCCCCCCHHHHhccCCcC---C-----HHHHHHHHHHcccchHHHhhcCCCccccCC
Q 000720 659 --------------GKKAYVPQSSWIQTGTIRENILFGKDM---R-----QSFYEEVLEGCALNQDIEMWADGDLSVVGE 716 (1333)
Q Consensus 659 --------------g~iayv~Q~~~i~~~Tv~enI~~g~~~---~-----~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~ 716 (1333)
..++|++|++.++..|++||+.++... . +++..+.++.+++.+++. +..++
T Consensus 85 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~ 157 (265)
T PRK14252 85 VNILSPEVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVK-------DRLGD 157 (265)
T ss_pred ccccccccCHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhh-------HHHhC
Confidence 247999999998888999999875321 1 122333444444432222 23456
Q ss_pred CCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhh-cCCEEEEEeCC
Q 000720 717 RGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMKDG 795 (1333)
Q Consensus 717 ~g~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~-~aD~i~vl~~G 795 (1333)
.+.+||||||||++||||++++|+++||||||++||+.+.+.+.+. ++.+.+++|+|++||+++++. .||++++|++|
T Consensus 158 ~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~-l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~G 236 (265)
T PRK14252 158 LAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEEL-ISDLKNKVTILIVTHNMQQAARVSDYTAYMYMG 236 (265)
T ss_pred CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHH-HHHHHhCCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 7889999999999999999999999999999999999998877664 444455789999999999985 59999999999
Q ss_pred eEEEccChHHHHh
Q 000720 796 KIEQSGKYEDLIA 808 (1333)
Q Consensus 796 ~i~~~g~~~~l~~ 808 (1333)
++++.|+.+++..
T Consensus 237 ~i~~~g~~~~~~~ 249 (265)
T PRK14252 237 ELIEFGATDTIFI 249 (265)
T ss_pred EEEEeCCHHHHHh
Confidence 9999999988865
No 276
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1e-34 Score=296.79 Aligned_cols=204 Identities=25% Similarity=0.403 Sum_probs=162.7
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECCe---------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK--------- 660 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g~--------- 660 (1333)
+..+|...+|.. ..+.++ ||++++||+|++.||||+||||.+.++.|+++|++|++ .+++.
T Consensus 5 L~a~~l~K~y~k--------r~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i-~ld~~diT~lPm~~ 75 (243)
T COG1137 5 LVAENLAKSYKK--------RKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKI-LLDDEDITKLPMHK 75 (243)
T ss_pred EEehhhhHhhCC--------eeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceE-EECCcccccCChHH
Confidence 556666677754 367888 99999999999999999999999999999999999997 66652
Q ss_pred -----EEEEcCCCCCCC-CCHHHHhccCCcCCH-HHH--HHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHH
Q 000720 661 -----KAYVPQSSWIQT-GTIRENILFGKDMRQ-SFY--EEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQL 731 (1333)
Q Consensus 661 -----iayv~Q~~~i~~-~Tv~enI~~g~~~~~-~~~--~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~L 731 (1333)
+||+||+|.+|. .||+|||..-.++.+ ... ++-.+.-.|.+++.. ....+.++.+||||||+|+.|
T Consensus 76 RArlGigYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i-----~hlr~~~a~sLSGGERRR~EI 150 (243)
T COG1137 76 RARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHI-----THLRDSKAYSLSGGERRRVEI 150 (243)
T ss_pred HhhcCcccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhch-----HHHhcCcccccccchHHHHHH
Confidence 699999999986 499999987554433 111 111111223333222 123347899999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCeEEEecCchhh-hhcCCEEEEEeCCeEEEccChHHHHhh
Q 000720 732 ARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-LSQKTVLYTTHQLEF-LDAADLVLVMKDGKIEQSGKYEDLIAD 809 (1333)
Q Consensus 732 ARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~-~~~~TvIlvtH~~~~-l~~aD~i~vl~~G~i~~~g~~~~l~~~ 809 (1333)
||||+.+|+.+||||||+|+||..-..|- ++++.+ .+|--|+++-|++.+ +..|||.+++.+|+|..+|+++|+.++
T Consensus 151 ARaLa~~P~fiLLDEPFAGVDPiaV~dIq-~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~n 229 (243)
T COG1137 151 ARALAANPKFILLDEPFAGVDPIAVIDIQ-RIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNN 229 (243)
T ss_pred HHHHhcCCCEEEecCCccCCCchhHHHHH-HHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHhcC
Confidence 99999999999999999999999877764 455444 468899999999954 788999999999999999999999874
No 277
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.5e-33 Score=326.51 Aligned_cols=213 Identities=21% Similarity=0.299 Sum_probs=164.6
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcC----CCCcEEEECC-----
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR----ISGAAIKVHG----- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~----~~G~~i~~~g----- 659 (1333)
.++++|++++|+.+. .....++| ||+|++||+++|+|+||||||||+++|+|++++ ++|++ .++|
T Consensus 3 ~L~v~~l~~~~~~~~----~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i-~~~G~~i~~ 77 (326)
T PRK11022 3 LLNVDKLSVHFGDES----APFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKL-EFNGQDLQR 77 (326)
T ss_pred eEEEeCeEEEECCCC----ccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEE-EECCEECCc
Confidence 378999999997531 11358999 999999999999999999999999999999974 77875 5554
Q ss_pred ------------eEEEEcCCCC--C-CCCCHHHHhccCC----cCCH----HHHHHHHHHcccchHHHhhcCCCccccCC
Q 000720 660 ------------KKAYVPQSSW--I-QTGTIRENILFGK----DMRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGE 716 (1333)
Q Consensus 660 ------------~iayv~Q~~~--i-~~~Tv~enI~~g~----~~~~----~~~~~v~~~~~l~~d~~~~~~g~~t~ig~ 716 (1333)
.++|++|+|. + +..|+.+++.... .... ++..+.++..++.+. ....+.
T Consensus 78 ~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~--------~~~l~~ 149 (326)
T PRK11022 78 ISEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDP--------ASRLDV 149 (326)
T ss_pred CCHHHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCCh--------HHHHhC
Confidence 3899999984 2 3468877764321 1111 222333444444211 122456
Q ss_pred CCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEecCchhhhh-cCCEEEEEeC
Q 000720 717 RGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLD-AADLVLVMKD 794 (1333)
Q Consensus 717 ~g~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~-~~~TvIlvtH~~~~l~-~aD~i~vl~~ 794 (1333)
.+.+|||||||||+||||++.+|+++|+||||++||+.++.++.+.+.+... .+.|+|+||||++.+. .||+|++|++
T Consensus 150 ~p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~ 229 (326)
T PRK11022 150 YPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYA 229 (326)
T ss_pred CchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 7889999999999999999999999999999999999999888875544333 4789999999999985 5999999999
Q ss_pred CeEEEccChHHHHhhcchHHH
Q 000720 795 GKIEQSGKYEDLIADQNSELV 815 (1333)
Q Consensus 795 G~i~~~g~~~~l~~~~~~~~~ 815 (1333)
|+|++.|+.+++.++....+.
T Consensus 230 G~ive~g~~~~~~~~p~hpyt 250 (326)
T PRK11022 230 GQVVETGKAHDIFRAPRHPYT 250 (326)
T ss_pred CEEEEECCHHHHhhCCCChHH
Confidence 999999999999875444443
No 278
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.6e-33 Score=312.58 Aligned_cols=198 Identities=28% Similarity=0.367 Sum_probs=160.9
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC----------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g---------- 659 (1333)
|+++|++++|+. .+.+++ |+++++||+++|+|+||||||||+++|+|+++|.+|++ .++|
T Consensus 1 l~~~~l~~~~~~--------~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i-~~~g~~~~~~~~~~ 71 (232)
T cd03300 1 IELENVSKFYGG--------FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEI-LLDGKDITNLPPHK 71 (232)
T ss_pred CEEEeEEEEeCC--------eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEE-EECCEEcCcCChhh
Confidence 468999999963 368999 99999999999999999999999999999999999986 5554
Q ss_pred -eEEEEcCCCCCCC-CCHHHHhccCCcC---CH----HHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHH
Q 000720 660 -KKAYVPQSSWIQT-GTIRENILFGKDM---RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQ 730 (1333)
Q Consensus 660 -~iayv~Q~~~i~~-~Tv~enI~~g~~~---~~----~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~ 730 (1333)
.++|++|++.++. .|++||+.++... +. ++.+++++..++. ........+||||||||++
T Consensus 72 ~~i~~~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~lS~G~~qrl~ 140 (232)
T cd03300 72 RPVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLE-----------GYANRKPSQLSGGQQQRVA 140 (232)
T ss_pred cceEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc-----------hhhcCChhhCCHHHHHHHH
Confidence 4799999998764 5999999875321 11 1223333333332 2234567899999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEecCchhhhhc-CCEEEEEeCCeEEEccChHHHHh
Q 000720 731 LARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS-QKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDLIA 808 (1333)
Q Consensus 731 LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~-~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~~g~~~~l~~ 808 (1333)
||||++.+|+++||||||++||+.+.+.+.+.+.....+ ++|+|++||+++++.. ||++++|++|++.+.|+.+++..
T Consensus 141 laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~~ 220 (232)
T cd03300 141 IARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYE 220 (232)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHHh
Confidence 999999999999999999999999988776644333333 7999999999999865 99999999999999999888765
No 279
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-33 Score=320.46 Aligned_cols=204 Identities=24% Similarity=0.323 Sum_probs=164.6
Q ss_pred ccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcC-----CCCcEEEECC---
Q 000720 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR-----ISGAAIKVHG--- 659 (1333)
Q Consensus 589 ~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~-----~~G~~i~~~g--- 659 (1333)
..++++|++++|+. .+.+++ ||++++||+++|+|+||||||||+++|+|+.+| .+|++ .++|
T Consensus 20 ~~l~i~nl~~~~~~--------~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i-~~~g~~i 90 (276)
T PRK14271 20 PAMAAVNLTLGFAG--------KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDV-LLGGRSI 90 (276)
T ss_pred cEEEEeeEEEEECC--------EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEE-EECCEEc
Confidence 35899999999964 368999 999999999999999999999999999999986 68875 5443
Q ss_pred -----------eEEEEcCCCCCCCCCHHHHhccCCcC----CHHHH----HHHHHHcccchHHHhhcCCCccccCCCCCC
Q 000720 660 -----------KKAYVPQSSWIQTGTIRENILFGKDM----RQSFY----EEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1333)
Q Consensus 660 -----------~iayv~Q~~~i~~~Tv~enI~~g~~~----~~~~~----~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~ 720 (1333)
.++|++|++.+++.|++||+.++... ....+ .+.++.+++...+ .+..++.+.+
T Consensus 91 ~~~~~~~~~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~l~~~~~~ 163 (276)
T PRK14271 91 FNYRDVLEFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAV-------KDRLSDSPFR 163 (276)
T ss_pred cccchhHHHhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchh-------hhHhhCCccc
Confidence 47999999988889999999876321 22111 2223333332111 1234567889
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeCCeEEE
Q 000720 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQ 799 (1333)
Q Consensus 721 LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~ 799 (1333)
||||||||++||||++++|+++||||||++||+.+.+.+++. ++.+.+++|+|++||+++.+.. ||++++|++|++++
T Consensus 164 LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~-L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~ 242 (276)
T PRK14271 164 LSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEF-IRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVE 242 (276)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH-HHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999998887764 4444456899999999998764 99999999999999
Q ss_pred ccChHHHHhh
Q 000720 800 SGKYEDLIAD 809 (1333)
Q Consensus 800 ~g~~~~l~~~ 809 (1333)
.|+++++.+.
T Consensus 243 ~g~~~~~~~~ 252 (276)
T PRK14271 243 EGPTEQLFSS 252 (276)
T ss_pred eCCHHHHHhC
Confidence 9999998763
No 280
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=100.00 E-value=3.1e-33 Score=314.75 Aligned_cols=198 Identities=24% Similarity=0.359 Sum_probs=163.3
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC--eEEEEcC
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--KKAYVPQ 666 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g--~iayv~Q 666 (1333)
.++++|++++|+. .+.+++ ||++++||+++|+||||||||||+++|+|+.+|++|++ .+++ .++|++|
T Consensus 4 ~l~~~~l~~~~~~--------~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i-~~~~~~~i~~v~q 74 (251)
T PRK09544 4 LVSLENVSVSFGQ--------RRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVI-KRNGKLRIGYVPQ 74 (251)
T ss_pred EEEEeceEEEECC--------ceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEE-EECCccCEEEecc
Confidence 4889999999963 358999 99999999999999999999999999999999999986 6765 5899999
Q ss_pred CCCCCC---CCHHHHhccCCcCCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHHccCCCEEE
Q 000720 667 SSWIQT---GTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYI 743 (1333)
Q Consensus 667 ~~~i~~---~Tv~enI~~g~~~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ill 743 (1333)
++.++. .|+++|+.+......++..++++.+++.+. ...++.+||||||||++||||++.+|+++|
T Consensus 75 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LSgGq~qrv~laral~~~p~lll 143 (251)
T PRK09544 75 KLYLDTTLPLTVNRFLRLRPGTKKEDILPALKRVQAGHL-----------IDAPMQKLSGGETQRVLLARALLNRPQLLV 143 (251)
T ss_pred ccccccccChhHHHHHhccccccHHHHHHHHHHcCChHH-----------HhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 986543 489999876433334445556666655422 234678999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEecCchhhhh-cCCEEEEEeCCeEEEccChHHHHh
Q 000720 744 FDDPFSAVDAHTGTHLFKQCLMGLLS-QKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKYEDLIA 808 (1333)
Q Consensus 744 LDEP~saLD~~~~~~l~~~~~~~~~~-~~TvIlvtH~~~~l~-~aD~i~vl~~G~i~~~g~~~~l~~ 808 (1333)
|||||++||+.+.+.+.+.+.+...+ ++|+|++||+++++. .||+|++|++ ++++.|+++++.+
T Consensus 144 LDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~-~i~~~g~~~~~~~ 209 (251)
T PRK09544 144 LDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH-HICCSGTPEVVSL 209 (251)
T ss_pred EeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECC-ceEeeCCHHHHhC
Confidence 99999999999988877654433334 789999999999985 5999999965 7999999988864
No 281
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=4.3e-33 Score=315.93 Aligned_cols=203 Identities=19% Similarity=0.265 Sum_probs=159.4
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC---------
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g--------- 659 (1333)
.++++|++++|+. .+.+++ ||++++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 6 ~l~~~~l~~~~~~--------~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i-~~~g~~~~~~~i~ 76 (258)
T PRK11701 6 LLSVRGLTKLYGP--------RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEV-HYRMRDGQLRDLY 76 (258)
T ss_pred eEEEeeeEEEcCC--------ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEE-EECCccccccccc
Confidence 5899999999963 358999 99999999999999999999999999999999999986 4433
Q ss_pred -------------eEEEEcCCCC--C-CCCCHHHHhccCCc----CC-HHHHHHHHHHcccchHHHhhcCCCccccCCCC
Q 000720 660 -------------KKAYVPQSSW--I-QTGTIRENILFGKD----MR-QSFYEEVLEGCALNQDIEMWADGDLSVVGERG 718 (1333)
Q Consensus 660 -------------~iayv~Q~~~--i-~~~Tv~enI~~g~~----~~-~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g 718 (1333)
.++|++|++. + .+.|+.||+.+... .+ .+..+++. +.++.+..+ .+..++++
T Consensus 77 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~------~~l~~~~l~-~~~~~~~~ 149 (258)
T PRK11701 77 ALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAG------DWLERVEID-AARIDDLP 149 (258)
T ss_pred cCCHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHH------HHHHHcCCC-hhHHhCCC
Confidence 3799999984 2 34689999864210 11 11111111 112222211 12456788
Q ss_pred CCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEecCchhhhh-cCCEEEEEeCCe
Q 000720 719 INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS-QKTVLYTTHQLEFLD-AADLVLVMKDGK 796 (1333)
Q Consensus 719 ~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~-~~TvIlvtH~~~~l~-~aD~i~vl~~G~ 796 (1333)
.+||||||||++||||++.+|+++||||||++||+.+.+.+.+.+.+...+ +.|+|++||+++++. .||+|++|++|+
T Consensus 150 ~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~ 229 (258)
T PRK11701 150 TTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGR 229 (258)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCE
Confidence 999999999999999999999999999999999999988777654333333 789999999999987 599999999999
Q ss_pred EEEccChHHHHh
Q 000720 797 IEQSGKYEDLIA 808 (1333)
Q Consensus 797 i~~~g~~~~l~~ 808 (1333)
+++.|+++++..
T Consensus 230 i~~~~~~~~~~~ 241 (258)
T PRK11701 230 VVESGLTDQVLD 241 (258)
T ss_pred EEEeCCHHHHhc
Confidence 999999998875
No 282
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.4e-33 Score=321.75 Aligned_cols=203 Identities=25% Similarity=0.390 Sum_probs=163.6
Q ss_pred ccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCc-----CCCCcEEEECC---
Q 000720 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP-----RISGAAIKVHG--- 659 (1333)
Q Consensus 589 ~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~-----~~~G~~i~~~g--- 659 (1333)
..+.++|++++|+. .+.|++ ||++++||+++|+|+||||||||+++|+|+.+ |++|++ .++|
T Consensus 44 ~~l~i~nl~~~~~~--------~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I-~i~g~~i 114 (305)
T PRK14264 44 AKLSVEDLDVYYGD--------DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSV-ELDGQDI 114 (305)
T ss_pred ceEEEEEEEEEeCC--------eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEE-EECCEEc
Confidence 46899999999964 358999 99999999999999999999999999999986 578975 5443
Q ss_pred ------------eEEEEcCCCCCCCCCHHHHhccCCcCC--------------------HHHHHHHHHHcccchHHHhhc
Q 000720 660 ------------KKAYVPQSSWIQTGTIRENILFGKDMR--------------------QSFYEEVLEGCALNQDIEMWA 707 (1333)
Q Consensus 660 ------------~iayv~Q~~~i~~~Tv~enI~~g~~~~--------------------~~~~~~v~~~~~l~~d~~~~~ 707 (1333)
+++|++|++.+++.|++||+.++.... .++..+.++.+++..++
T Consensus 115 ~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~---- 190 (305)
T PRK14264 115 YQDGVNLVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEV---- 190 (305)
T ss_pred ccccccHHHHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhh----
Confidence 479999999888889999999763210 11122333333332222
Q ss_pred CCCccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-C
Q 000720 708 DGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-A 786 (1333)
Q Consensus 708 ~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-a 786 (1333)
.+..++++.+||||||||++|||||+++|+++||||||+|||+.+...+.+ +++.+.+++|+|++||+++++.. |
T Consensus 191 ---~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~-~L~~~~~~~tiiivtH~~~~i~~~~ 266 (305)
T PRK14264 191 ---NDRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIED-LIEELAEEYTVVVVTHNMQQAARIS 266 (305)
T ss_pred ---hHHhcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHhcCCEEEEEEcCHHHHHHhc
Confidence 133457789999999999999999999999999999999999999887765 45555556899999999999865 9
Q ss_pred CEE-EEEeCCeEEEccChHHHHh
Q 000720 787 DLV-LVMKDGKIEQSGKYEDLIA 808 (1333)
Q Consensus 787 D~i-~vl~~G~i~~~g~~~~l~~ 808 (1333)
|++ ++|++|++++.|+++++.+
T Consensus 267 d~i~~~l~~G~i~~~g~~~~~~~ 289 (305)
T PRK14264 267 DQTAVFLTGGELVEYDDTDKIFE 289 (305)
T ss_pred CEEEEEecCCEEEEeCCHHHHHh
Confidence 997 5679999999999998865
No 283
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.2e-33 Score=314.33 Aligned_cols=203 Identities=20% Similarity=0.341 Sum_probs=160.5
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCC-----CCcEEEECC----
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRI-----SGAAIKVHG---- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~-----~G~~i~~~g---- 659 (1333)
.++++|++++|+. .+.+++ ||++++||+++|+||||||||||+++|+|+++|. +|++ .++|
T Consensus 4 ~l~~~~l~~~~~~--------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i-~~~g~~~~ 74 (252)
T PRK14272 4 LLSAQDVNIYYGD--------KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRI-LLDGQDIY 74 (252)
T ss_pred EEEEeeeEEEECC--------EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeE-EECCEEcc
Confidence 4789999999963 368999 9999999999999999999999999999999864 6875 4433
Q ss_pred -----------eEEEEcCCCCCCC-CCHHHHhccCCcC----CHHHHH----HHHHHcccchHHHhhcCCCccccCCCCC
Q 000720 660 -----------KKAYVPQSSWIQT-GTIRENILFGKDM----RQSFYE----EVLEGCALNQDIEMWADGDLSVVGERGI 719 (1333)
Q Consensus 660 -----------~iayv~Q~~~i~~-~Tv~enI~~g~~~----~~~~~~----~v~~~~~l~~d~~~~~~g~~t~ig~~g~ 719 (1333)
.++|++|++.++. .|++||+.++... .++... +.++..++...+. ...+..+.
T Consensus 75 ~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~ 147 (252)
T PRK14272 75 GPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVK-------DRLKTPAT 147 (252)
T ss_pred cCccCHHHhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhh-------hhhcCCcc
Confidence 4799999987766 6999999865321 111111 1122222211111 12346678
Q ss_pred CCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeCCeEE
Q 000720 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIE 798 (1333)
Q Consensus 720 ~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~ 798 (1333)
+||||||||++||||++++|+++||||||++||+.+.+.+.+ +++...+++|+|++||+++.+.. ||++++|++|+++
T Consensus 148 ~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~-~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~ 226 (252)
T PRK14272 148 GLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIED-LMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLV 226 (252)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHH-HHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999887766 44555567999999999999875 9999999999999
Q ss_pred EccChHHHHhh
Q 000720 799 QSGKYEDLIAD 809 (1333)
Q Consensus 799 ~~g~~~~l~~~ 809 (1333)
+.|+++++..+
T Consensus 227 ~~~~~~~~~~~ 237 (252)
T PRK14272 227 EHGPTDQLFTN 237 (252)
T ss_pred EeCCHHHHHhC
Confidence 99999988753
No 284
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.9e-33 Score=314.89 Aligned_cols=202 Identities=25% Similarity=0.366 Sum_probs=164.3
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCc-----CCCCcEEEECC----
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP-----RISGAAIKVHG---- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~-----~~~G~~i~~~g---- 659 (1333)
.++++|++++|+. .+.+++ ||++++||+++|+||||||||||+++|+|+.+ |++|++ .++|
T Consensus 3 ~l~~~~v~~~~~~--------~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v-~~~g~~i~ 73 (250)
T PRK14266 3 RIEVENLNTYFDD--------AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHI-YLDGVDIY 73 (250)
T ss_pred EEEEEeEEEEeCC--------eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEE-EECCEEcc
Confidence 4789999999963 358999 99999999999999999999999999999864 378875 4433
Q ss_pred -----------eEEEEcCCCCCCCCCHHHHhccCCc----CCH----HHHHHHHHHcccchHHHhhcCCCccccCCCCCC
Q 000720 660 -----------KKAYVPQSSWIQTGTIRENILFGKD----MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1333)
Q Consensus 660 -----------~iayv~Q~~~i~~~Tv~enI~~g~~----~~~----~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~ 720 (1333)
.++|+||++++++.|++||+.++.. .++ ++..+.++.+++.+++.. ..++.+.+
T Consensus 74 ~~~~~~~~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~ 146 (250)
T PRK14266 74 DPAVDVVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKD-------KLDKSALG 146 (250)
T ss_pred cccccHHHHhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHH-------HHhCCccc
Confidence 4799999999888899999987531 111 223344555555433322 23467889
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeCCeEEE
Q 000720 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQ 799 (1333)
Q Consensus 721 LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~ 799 (1333)
||||||||++||||++++|+++||||||++||+.+...+.+ +++...+++|+|++||+++++.. +|++++|++|++++
T Consensus 147 LS~Gq~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~-~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~ 225 (250)
T PRK14266 147 LSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIED-LIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIE 225 (250)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHH-HHHHHhcCCeEEEEECCHHHHHhhcCEEEEEECCeEEE
Confidence 99999999999999999999999999999999999887765 45555568899999999998765 99999999999999
Q ss_pred ccChHHHHh
Q 000720 800 SGKYEDLIA 808 (1333)
Q Consensus 800 ~g~~~~l~~ 808 (1333)
.|+++++..
T Consensus 226 ~g~~~~~~~ 234 (250)
T PRK14266 226 SGLTDQIFI 234 (250)
T ss_pred eCCHHHHHh
Confidence 999998865
No 285
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=3.8e-33 Score=307.29 Aligned_cols=189 Identities=28% Similarity=0.402 Sum_probs=152.2
Q ss_pred EEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC-----------
Q 000720 592 DIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG----------- 659 (1333)
Q Consensus 592 ~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g----------- 659 (1333)
+++|+++.|+. .+++ |+++++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 2 ~~~~l~~~~~~----------~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~g~~~~~~~~~~~ 70 (213)
T TIGR01277 2 ALDKVRYEYEH----------LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSI-KVNDQSHTGLAPYQR 70 (213)
T ss_pred eEEeeeEEeCC----------cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEE-EECCEEcccCChhcc
Confidence 57899998852 2457 99999999999999999999999999999999999986 5554
Q ss_pred eEEEEcCCCCCCC-CCHHHHhccCCc--C--C---HHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHH
Q 000720 660 KKAYVPQSSWIQT-GTIRENILFGKD--M--R---QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQL 731 (1333)
Q Consensus 660 ~iayv~Q~~~i~~-~Tv~enI~~g~~--~--~---~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~L 731 (1333)
.++|++|+|.++. .|++||+.++.. . . +.+.+++++..++.+ ..+..+.+||||||||++|
T Consensus 71 ~i~~v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrl~l 139 (213)
T TIGR01277 71 PVSMLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIAD-----------YLDRLPEQLSGGQRQRVAL 139 (213)
T ss_pred ceEEEeccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHH-----------HhhCCcccCCHHHHHHHHH
Confidence 3799999998765 699999986421 1 1 122333444443321 2335667999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEecCchhhhh-cCCEEEEEeCCeEEEccC
Q 000720 732 ARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS-QKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGK 802 (1333)
Q Consensus 732 ARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~-~~TvIlvtH~~~~l~-~aD~i~vl~~G~i~~~g~ 802 (1333)
|||++.+|++++|||||++||+.+++.+.+.+.+...+ +.|+|++||+++++. .||++++|++|++++.|.
T Consensus 140 aral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 140 ARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence 99999999999999999999999988887654443333 789999999999876 499999999999998764
No 286
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=4.9e-33 Score=316.75 Aligned_cols=209 Identities=24% Similarity=0.329 Sum_probs=162.4
Q ss_pred cEEEeeeEEEcCCccccc-CCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC--------
Q 000720 590 AIDIEAGEYAWDAREENF-KKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~-~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g-------- 659 (1333)
.++++|++++|....... ....+.+++ ||++++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i-~~~g~~~~~~~~ 82 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEL-LIDDHPLHFGDY 82 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEE-EECCEECCCCch
Confidence 589999999996320000 012468999 99999999999999999999999999999999999986 5543
Q ss_pred -----eEEEEcCCCC--C-CCCCHHHHhccCCc----CCH----HHHHHHHHHcccchHHHhhcCCCccccCCCCCCCCh
Q 000720 660 -----KKAYVPQSSW--I-QTGTIRENILFGKD----MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSG 723 (1333)
Q Consensus 660 -----~iayv~Q~~~--i-~~~Tv~enI~~g~~----~~~----~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSG 723 (1333)
.++|++|++. + ...|+.||+.++.. ... +...++++.+++..+. .+..+.+|||
T Consensus 83 ~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LS~ 152 (267)
T PRK15112 83 SYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDH----------ASYYPHMLAP 152 (267)
T ss_pred hhHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHH----------HhcCchhcCH
Confidence 4799999974 3 34599999875321 111 1223344444442111 1245679999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEecCchhhhhc-CCEEEEEeCCeEEEcc
Q 000720 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSG 801 (1333)
Q Consensus 724 GQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~-~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~~g 801 (1333)
|||||++||||++.+|+++||||||++||+.+.+.+.+.+.+... .++|||++||+++.+.. ||++++|++|++++.|
T Consensus 153 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~ 232 (267)
T PRK15112 153 GQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERG 232 (267)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999999999998877765444333 37899999999999875 9999999999999999
Q ss_pred ChHHHHhh
Q 000720 802 KYEDLIAD 809 (1333)
Q Consensus 802 ~~~~l~~~ 809 (1333)
+++++.+.
T Consensus 233 ~~~~~~~~ 240 (267)
T PRK15112 233 STADVLAS 240 (267)
T ss_pred CHHHHhcC
Confidence 99998763
No 287
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.5e-33 Score=325.54 Aligned_cols=214 Identities=17% Similarity=0.261 Sum_probs=165.6
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCc----CCCCcEEEECC-----
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP----RISGAAIKVHG----- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~----~~~G~~i~~~g----- 659 (1333)
.++++|++++|+... .....+++ ||+|++||+++|+|+||||||||+++|+|+.+ +++|++ .++|
T Consensus 3 ~L~v~~l~~~y~~~~----~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i-~~~g~~i~~ 77 (330)
T PRK15093 3 LLDIRNLTIEFKTSD----GWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRM-RFDDIDLLR 77 (330)
T ss_pred eEEEeeeEEEEeCCC----CCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEE-EECCEECCc
Confidence 478999999996431 12458999 99999999999999999999999999999986 477875 5543
Q ss_pred ------------eEEEEcCCCCC---CCCCHHHHhccCCc---C------C----HHHHHHHHHHcccchHHHhhcCCCc
Q 000720 660 ------------KKAYVPQSSWI---QTGTIRENILFGKD---M------R----QSFYEEVLEGCALNQDIEMWADGDL 711 (1333)
Q Consensus 660 ------------~iayv~Q~~~i---~~~Tv~enI~~g~~---~------~----~~~~~~v~~~~~l~~d~~~~~~g~~ 711 (1333)
.++|++|+|.. +..||.+|+..... . + .++..+.++..++.+..
T Consensus 78 ~~~~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~-------- 149 (330)
T PRK15093 78 LSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHK-------- 149 (330)
T ss_pred CCHHHHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChH--------
Confidence 48999999852 35699999964210 0 0 11223344444443211
Q ss_pred cccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEecCchhhhhc-CCEE
Q 000720 712 SVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA-ADLV 789 (1333)
Q Consensus 712 t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~-~~~TvIlvtH~~~~l~~-aD~i 789 (1333)
....+.+.+|||||||||+|||||+.+|+++|+||||++||+.++.++.+.+.+... .+.|+|+||||++.+.. ||+|
T Consensus 150 ~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri 229 (330)
T PRK15093 150 DAMRSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKI 229 (330)
T ss_pred HHHhCCchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEE
Confidence 123467789999999999999999999999999999999999998888775444333 37899999999999865 9999
Q ss_pred EEEeCCeEEEccChHHHHhhcchHHHH
Q 000720 790 LVMKDGKIEQSGKYEDLIADQNSELVR 816 (1333)
Q Consensus 790 ~vl~~G~i~~~g~~~~l~~~~~~~~~~ 816 (1333)
++|++|+|++.|+.+++.++....+.+
T Consensus 230 ~vm~~G~ive~g~~~~i~~~p~~~y~~ 256 (330)
T PRK15093 230 NVLYCGQTVETAPSKELVTTPHHPYTQ 256 (330)
T ss_pred EEEECCEEEEECCHHHHHhCCCCHHHH
Confidence 999999999999999987644444433
No 288
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.3e-33 Score=315.30 Aligned_cols=202 Identities=24% Similarity=0.386 Sum_probs=163.1
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcC-----CCCcEEEECC----
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR-----ISGAAIKVHG---- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~-----~~G~~i~~~g---- 659 (1333)
.++++|++++|+. .+.+++ ||++++||+++|+|+||||||||+++|+|+++| ++|++ .++|
T Consensus 7 ~l~~~~l~~~~~~--------~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i-~~~g~~i~ 77 (259)
T PRK14260 7 AIKVKDLSFYYNT--------SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVV-DFFGQNIY 77 (259)
T ss_pred eEEEEEEEEEECC--------eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEE-EECCEecc
Confidence 5899999999963 258999 999999999999999999999999999999885 47875 4432
Q ss_pred -----------eEEEEcCCCCCCCCCHHHHhccCCc----CCH----HHHHHHHHHcccchHHHhhcCCCccccCCCCCC
Q 000720 660 -----------KKAYVPQSSWIQTGTIRENILFGKD----MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1333)
Q Consensus 660 -----------~iayv~Q~~~i~~~Tv~enI~~g~~----~~~----~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~ 720 (1333)
+++|++|++.+++.|++||+.++.. ..+ ++..++++.+++.+++.. ..++.+.+
T Consensus 78 ~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~ 150 (259)
T PRK14260 78 DPRININRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKD-------KLNKSALG 150 (259)
T ss_pred ccccchHhhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhh-------HhcCCccc
Confidence 4799999998888999999987532 111 122334444444322221 23467889
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEe-----C
Q 000720 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMK-----D 794 (1333)
Q Consensus 721 LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~-----~ 794 (1333)
||||||||++||||++.+|+++||||||++||+.+.+.+.+. ++...+++|+|++||+++++.. ||++++|+ +
T Consensus 151 LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~-l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~ 229 (259)
T PRK14260 151 LSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEEL-IHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRI 229 (259)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHH-HHHHhcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCC
Confidence 999999999999999999999999999999999998877664 4444557899999999999865 99999997 5
Q ss_pred CeEEEccChHHHHh
Q 000720 795 GKIEQSGKYEDLIA 808 (1333)
Q Consensus 795 G~i~~~g~~~~l~~ 808 (1333)
|++++.|+++++.+
T Consensus 230 G~i~~~~~~~~~~~ 243 (259)
T PRK14260 230 GQMVEFGVTTQIFS 243 (259)
T ss_pred ceEEEeCCHHHHhc
Confidence 99999999999865
No 289
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=5.2e-33 Score=311.15 Aligned_cols=198 Identities=34% Similarity=0.442 Sum_probs=160.5
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC----------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g---------- 659 (1333)
++++|.+++|+. ++.+++ |+++.+||+++|+||||||||||+++|+|+.+|.+|++ .++|
T Consensus 1 i~i~~l~~~~~~--------~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i-~i~g~~~~~~~~~~ 71 (237)
T TIGR00968 1 IEIANISKRFGS--------FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRI-RLNGQDATRVHARD 71 (237)
T ss_pred CEEEEEEEEECC--------eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEE-EECCEEcCcCChhh
Confidence 468999999964 258999 99999999999999999999999999999999999986 5543
Q ss_pred -eEEEEcCCCCCCC-CCHHHHhccCCcC---CHH----HHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHH
Q 000720 660 -KKAYVPQSSWIQT-GTIRENILFGKDM---RQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQ 730 (1333)
Q Consensus 660 -~iayv~Q~~~i~~-~Tv~enI~~g~~~---~~~----~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~ 730 (1333)
.++|+||+|.++. .|++||+.++... +.. ..++.++..++. ...+....+||||||||++
T Consensus 72 ~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~lS~G~~qrl~ 140 (237)
T TIGR00968 72 RKIGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLE-----------GLGDRYPNQLSGGQRQRVA 140 (237)
T ss_pred cCEEEEecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCH-----------hHhhCChhhCCHHHHHHHH
Confidence 4799999998775 5999999876432 111 112222222221 1234567899999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEecCchhhhhc-CCEEEEEeCCeEEEccChHHHHh
Q 000720 731 LARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS-QKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDLIA 808 (1333)
Q Consensus 731 LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~-~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~~g~~~~l~~ 808 (1333)
||||++++|++++|||||++||+++.+.+.+.+.+...+ ++|+|++||+++.+.. ||++++|++|++++.|+.+++.+
T Consensus 141 laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~ 220 (237)
T TIGR00968 141 LARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYD 220 (237)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHHc
Confidence 999999999999999999999999988777644433333 7899999999998765 99999999999999999988865
No 290
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.2e-33 Score=315.77 Aligned_cols=203 Identities=26% Similarity=0.377 Sum_probs=163.0
Q ss_pred ccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcC-----CCCcEEEECC---
Q 000720 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR-----ISGAAIKVHG--- 659 (1333)
Q Consensus 589 ~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~-----~~G~~i~~~g--- 659 (1333)
..++++|+++.|+. .+.+++ ||++++||+++|+||||||||||+++|+|+.++ .+|++ .++|
T Consensus 19 ~~l~~~nl~~~~~~--------~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i-~~~g~~l 89 (274)
T PRK14265 19 SVFEVEGVKVFYGG--------FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRL-LYRDRNI 89 (274)
T ss_pred ceEEEeeEEEEeCC--------eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceE-EECCEec
Confidence 46999999999963 258999 999999999999999999999999999999863 57875 4432
Q ss_pred ------------eEEEEcCCCCCCCCCHHHHhccCCcC---C---HHHHHHHHHHcccchHHHhhcCCCccccCCCCCCC
Q 000720 660 ------------KKAYVPQSSWIQTGTIRENILFGKDM---R---QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINL 721 (1333)
Q Consensus 660 ------------~iayv~Q~~~i~~~Tv~enI~~g~~~---~---~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~L 721 (1333)
.++|++|++.+++.|+.||+.++... . ++..++.++.+++...+. ...++.+.+|
T Consensus 90 ~~~~~~~~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~L 162 (274)
T PRK14265 90 YDSQINSVKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVK-------DKLKEKGTAL 162 (274)
T ss_pred ccccchhHHHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhH-------HHhcCCcccC
Confidence 47999999988778999999876421 1 111122333333322221 1234678899
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEe-------
Q 000720 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMK------- 793 (1333)
Q Consensus 722 SGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~------- 793 (1333)
|||||||++||||++.+|+++||||||++||+.+.+.+.+. ++.+.+++|||++||+++.+.. ||++++|+
T Consensus 163 SgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~-L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~ 241 (274)
T PRK14265 163 SGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEEL-CLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYG 241 (274)
T ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHH-HHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeccccccc
Confidence 99999999999999999999999999999999998877764 4444557899999999999864 99999997
Q ss_pred --CCeEEEccChHHHHh
Q 000720 794 --DGKIEQSGKYEDLIA 808 (1333)
Q Consensus 794 --~G~i~~~g~~~~l~~ 808 (1333)
+|++++.|+.+++..
T Consensus 242 ~~~G~~~~~g~~~~~~~ 258 (274)
T PRK14265 242 KRRGKLVEFSPTEQMFG 258 (274)
T ss_pred ccCceEEEeCCHHHHHh
Confidence 899999999999875
No 291
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.1e-33 Score=313.74 Aligned_cols=202 Identities=23% Similarity=0.338 Sum_probs=160.6
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCc--C---CCCcEEEECC----
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP--R---ISGAAIKVHG---- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~--~---~~G~~i~~~g---- 659 (1333)
.++++|+++.|+. .+.+++ ||++++||+++|+|+||||||||+++|+|..+ | ++|++ .++|
T Consensus 5 ~l~~~~l~~~~~~--------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i-~~~g~~~~ 75 (252)
T PRK14255 5 IITSSDVHLFYGK--------FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNV-SLRGQNIY 75 (252)
T ss_pred eEEEEeEEEEECC--------eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEE-EEcCEEcc
Confidence 4889999999963 358999 99999999999999999999999999999865 4 47875 4433
Q ss_pred -----------eEEEEcCCCCCCCCCHHHHhccCCcC----CHH----HHHHHHHHcccchHHHhhcCCCccccCCCCCC
Q 000720 660 -----------KKAYVPQSSWIQTGTIRENILFGKDM----RQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1333)
Q Consensus 660 -----------~iayv~Q~~~i~~~Tv~enI~~g~~~----~~~----~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~ 720 (1333)
.++|++|++.+++.|++||+.++... ..+ ...+.++..++...+ ....+..+.+
T Consensus 76 ~~~~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i-------~~~~~~~~~~ 148 (252)
T PRK14255 76 APNEDVVQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEV-------KDHLHESALS 148 (252)
T ss_pred cccccHHHhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccch-------hhHHhcCccc
Confidence 47999999988778999999875321 111 112222333222111 1234567889
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhh-cCCEEEEEeCCeEEE
Q 000720 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQ 799 (1333)
Q Consensus 721 LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~-~aD~i~vl~~G~i~~ 799 (1333)
||||||||++||||++.+|+++||||||++||+++++.+.+. ++...+++|+|++||+++.+. .||+|++|++|++++
T Consensus 149 LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~-l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~ 227 (252)
T PRK14255 149 LSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENM-LLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIE 227 (252)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHH-HHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999998877664 444455689999999999986 499999999999999
Q ss_pred ccChHHHHh
Q 000720 800 SGKYEDLIA 808 (1333)
Q Consensus 800 ~g~~~~l~~ 808 (1333)
.|+..++..
T Consensus 228 ~~~~~~~~~ 236 (252)
T PRK14255 228 FADTKQMFL 236 (252)
T ss_pred eCCHHHHhc
Confidence 999888765
No 292
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=9.2e-33 Score=312.40 Aligned_cols=202 Identities=24% Similarity=0.315 Sum_probs=161.8
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcC----CCCcEEEECC-----
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR----ISGAAIKVHG----- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~----~~G~~i~~~g----- 659 (1333)
.++++|++++| + .+++++ |+++++||+++|+|+||||||||+++|+|+.+| ++|++ .++|
T Consensus 4 ~l~~~~l~~~~--~-------~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i-~~~g~~i~~ 73 (254)
T PRK10418 4 QIELRNIALQA--A-------QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRV-LLDGKPVAP 73 (254)
T ss_pred EEEEeCeEEEe--c-------cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEE-EECCeeccc
Confidence 58899999998 2 257999 999999999999999999999999999999999 89986 5543
Q ss_pred ------eEEEEcCCCC-CC--CCCHHHHhcc-----CCcCCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHH
Q 000720 660 ------KKAYVPQSSW-IQ--TGTIRENILF-----GKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (1333)
Q Consensus 660 ------~iayv~Q~~~-i~--~~Tv~enI~~-----g~~~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQ 725 (1333)
.++|++|++. .+ ..|+.+|+.+ +....+++..+.++.+++.+. .+.+++.+.+|||||
T Consensus 74 ~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--------~~~~~~~~~~LS~Gq 145 (254)
T PRK10418 74 CALRGRKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENA--------ARVLKLYPFEMSGGM 145 (254)
T ss_pred cccccceEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCCh--------hhhhhcCCcccCHHH
Confidence 4899999973 33 3588888754 222222334445554444221 123457788999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEecCchhhhh-cCCEEEEEeCCeEEEccCh
Q 000720 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKY 803 (1333)
Q Consensus 726 kqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~-~~~TvIlvtH~~~~l~-~aD~i~vl~~G~i~~~g~~ 803 (1333)
|||++||||++.+|+++||||||++||+.+.+.+.+.+.+... .+.|+|++||+++.+. .||++++|++|++++.|+.
T Consensus 146 ~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~ 225 (254)
T PRK10418 146 LQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDV 225 (254)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEecCH
Confidence 9999999999999999999999999999998877764433333 3789999999999985 5999999999999999999
Q ss_pred HHHHhh
Q 000720 804 EDLIAD 809 (1333)
Q Consensus 804 ~~l~~~ 809 (1333)
+++.++
T Consensus 226 ~~~~~~ 231 (254)
T PRK10418 226 ETLFNA 231 (254)
T ss_pred HHHhhC
Confidence 998763
No 293
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=3.1e-33 Score=326.03 Aligned_cols=216 Identities=19% Similarity=0.296 Sum_probs=167.6
Q ss_pred ccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCC---CCcEEEECC-----
Q 000720 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRI---SGAAIKVHG----- 659 (1333)
Q Consensus 589 ~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~---~G~~i~~~g----- 659 (1333)
..++++|.+++|.... .....++| ||+|++||+++|+|+||||||||+++|+|+++|. +|++ .++|
T Consensus 11 ~~L~i~~l~~~~~~~~----~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I-~~~G~~i~~ 85 (330)
T PRK09473 11 ALLDVKDLRVTFSTPD----GDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSA-TFNGREILN 85 (330)
T ss_pred ceEEEeCeEEEEecCC----CCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEE-EECCEECCc
Confidence 4689999999996431 12457999 9999999999999999999999999999999985 8876 5543
Q ss_pred ------------eEEEEcCCCC--C-CCCCHHHHhccCC----cCCHH----HHHHHHHHcccchHHHhhcCCCccccCC
Q 000720 660 ------------KKAYVPQSSW--I-QTGTIRENILFGK----DMRQS----FYEEVLEGCALNQDIEMWADGDLSVVGE 716 (1333)
Q Consensus 660 ------------~iayv~Q~~~--i-~~~Tv~enI~~g~----~~~~~----~~~~v~~~~~l~~d~~~~~~g~~t~ig~ 716 (1333)
.++|++|+|. + +..|+.+|+.... ..+.. +..+.++..++ +++ .+.++.
T Consensus 86 ~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL-------~~~-~~~~~~ 157 (330)
T PRK09473 86 LPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKM-------PEA-RKRMKM 157 (330)
T ss_pred CCHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-------CCh-HHHhcC
Confidence 4899999983 3 4568988886421 12221 12222333222 111 123567
Q ss_pred CCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEecCchhhhh-cCCEEEEEeC
Q 000720 717 RGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS-QKTVLYTTHQLEFLD-AADLVLVMKD 794 (1333)
Q Consensus 717 ~g~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~-~~TvIlvtH~~~~l~-~aD~i~vl~~ 794 (1333)
.+.+|||||||||+||||++.+|+++|+||||+|||+.++..+.+.+.+...+ +.|+|+||||++.+. .||+|++|++
T Consensus 158 ~p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~ 237 (330)
T PRK09473 158 YPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYA 237 (330)
T ss_pred CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEEC
Confidence 88999999999999999999999999999999999999999887754433333 789999999999986 4999999999
Q ss_pred CeEEEccChHHHHhhcchHHHHH
Q 000720 795 GKIEQSGKYEDLIADQNSELVRQ 817 (1333)
Q Consensus 795 G~i~~~g~~~~l~~~~~~~~~~~ 817 (1333)
|+|++.|+.+++.+++...+...
T Consensus 238 G~ive~g~~~~i~~~p~~pyt~~ 260 (330)
T PRK09473 238 GRTMEYGNARDVFYQPSHPYSIG 260 (330)
T ss_pred CEEEEECCHHHHHhCCCCHHHHH
Confidence 99999999999987555555443
No 294
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.9e-33 Score=310.29 Aligned_cols=197 Identities=33% Similarity=0.478 Sum_probs=160.2
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC----------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g---------- 659 (1333)
|+++|+++.|+. ..+++ |+++++||+++|+||||||||||+++|+|+.+|++|++ .++|
T Consensus 1 l~~~~l~~~~~~---------~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v-~i~g~~~~~~~~~~ 70 (235)
T cd03299 1 LKVENLSKDWKE---------FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKI-LLNGKDITNLPPEK 70 (235)
T ss_pred CeeEeEEEEeCC---------ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEE-EECCEEcCcCChhH
Confidence 467899999852 25999 99999999999999999999999999999999999986 6655
Q ss_pred -eEEEEcCCCCCC-CCCHHHHhccCCcCC---HH----HHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHH
Q 000720 660 -KKAYVPQSSWIQ-TGTIRENILFGKDMR---QS----FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQ 730 (1333)
Q Consensus 660 -~iayv~Q~~~i~-~~Tv~enI~~g~~~~---~~----~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~ 730 (1333)
.++|++|++.++ ..|++||+.++.... .. ...+.++.+++.+ .+++++.+||||||||++
T Consensus 71 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrl~ 139 (235)
T cd03299 71 RDISYVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDH-----------LLNRKPETLSGGEQQRVA 139 (235)
T ss_pred cCEEEEeecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh-----------HHhcCcccCCHHHHHHHH
Confidence 479999998766 579999998753221 11 1223333333322 234567899999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEecCchhhhhc-CCEEEEEeCCeEEEccChHHHHh
Q 000720 731 LARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS-QKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDLIA 808 (1333)
Q Consensus 731 LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~-~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~~g~~~~l~~ 808 (1333)
||||++++|++++|||||++||+.+.+.+.+.+.....+ ++|+|++||+++++.. ||++++|++|++++.|+++++.+
T Consensus 140 laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 219 (235)
T cd03299 140 IARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFK 219 (235)
T ss_pred HHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHh
Confidence 999999999999999999999999988776644333333 8999999999999865 99999999999999999888765
No 295
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.2e-33 Score=317.37 Aligned_cols=199 Identities=28% Similarity=0.414 Sum_probs=158.9
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC---------
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g--------- 659 (1333)
.++++|++++|+.+ .+.+++ ||++++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 6 ~l~~~~l~~~~~~~-------~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i-~~~g~~i~~~~~~ 77 (272)
T PRK15056 6 GIVVNDVTVTWRNG-------HTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKI-SILGQPTRQALQK 77 (272)
T ss_pred eEEEEeEEEEecCC-------cEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE-EECCEEhHHhhcc
Confidence 58999999999632 368999 99999999999999999999999999999999999986 6654
Q ss_pred -eEEEEcCCCCC---CCCCHHHHhccCCc--------CC---HHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChH
Q 000720 660 -KKAYVPQSSWI---QTGTIRENILFGKD--------MR---QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGG 724 (1333)
Q Consensus 660 -~iayv~Q~~~i---~~~Tv~enI~~g~~--------~~---~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGG 724 (1333)
.++|++|++.+ +..+++||+.++.. .. +++.++.++..++.. ..+.++.+||||
T Consensus 78 ~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~~~~LSgG 146 (272)
T PRK15056 78 NLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVE-----------FRHRQIGELSGG 146 (272)
T ss_pred ceEEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChh-----------HhcCCcccCCHH
Confidence 48999999854 34589999876421 00 112223333333321 223567899999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhh-cCCEEEEEeCCeEEEccCh
Q 000720 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKY 803 (1333)
Q Consensus 725 QkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~-~aD~i~vl~~G~i~~~g~~ 803 (1333)
||||++||||++.+|+++||||||++||+.+.+.+.+.+.+...+++|||++||+++.+. .||+++++ +|++++.|++
T Consensus 147 ~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~-~G~i~~~g~~ 225 (272)
T PRK15056 147 QKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLASGPT 225 (272)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCH
Confidence 999999999999999999999999999999988877654333345899999999999875 59999777 8999999999
Q ss_pred HHHHh
Q 000720 804 EDLIA 808 (1333)
Q Consensus 804 ~~l~~ 808 (1333)
+++..
T Consensus 226 ~~~~~ 230 (272)
T PRK15056 226 ETTFT 230 (272)
T ss_pred HhccC
Confidence 88753
No 296
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=100.00 E-value=1.5e-29 Score=304.00 Aligned_cols=433 Identities=20% Similarity=0.243 Sum_probs=295.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccCCC--ChH------HHHHHHHhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 000720 339 YFGANRIGIRVRSALTVLIYKRSMAIKFAGP--SSG------IIINMINVDVERIGDFFLYIH-RIWLLPVQVFLALVIL 409 (1333)
Q Consensus 339 ~~~~~~~~~rir~~l~~~iy~K~L~ls~~~~--~~G------~i~nlms~D~~~i~~~~~~~~-~~w~~plqi~~~l~lL 409 (1333)
.|..+++.++.|.-|...+.+|=|.-...-+ ..| ..=..++.|+..+.+....+- .+.-..++++.-..+|
T Consensus 107 ~~L~~~l~~~wR~wLt~~l~~~wl~~~~~y~l~~~~~~~~~dNpDQRi~eDi~~~t~~t~~l~~g~l~s~islisF~~iL 186 (604)
T COG4178 107 TWLNQMLRLRWREWLTKDLLDRWLDPRRYYRLAQAGGIGLIDNPDQRIQEDIRNFTETTLDLSFGLLQSVISLISFTGIL 186 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHhcccccCCCChHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456789999999999999999886553322 222 233567788877666543322 2233334444445567
Q ss_pred HHHhhhHH---------HHHHHH--HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhhhHHHHHhchH
Q 000720 410 YKNLGAAP---------AFAALF--STIFVMVSNTPLANRQERFHS-----MIMEAKDARIKATSETLKSMRVLKLLSWE 473 (1333)
Q Consensus 410 ~~~lG~~a---------~l~gl~--~~~~~~~~~~~~~~~~~~~~~-----~~~~~~D~R~~~~~E~L~~Ir~IK~~~wE 473 (1333)
|...| .. .++|.. ++++..++...++-++.+--. +....-|-|-.+ ..+..+-..|-+|+-|
T Consensus 187 w~lsg-~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li~LN~~~~~~EA~fR~~L-vrv~enaE~IAly~GE 264 (604)
T COG4178 187 WSLSG-GLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEADFRYSL-VRVRENAEAIALYRGE 264 (604)
T ss_pred HHccC-cceEeecccccccchHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHH-HHHHhhHHHHHHhcCc
Confidence 75444 21 112211 122222333333322222111 122223445443 4577788899999999
Q ss_pred HHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q 000720 474 QEFLKKLLRL--------REIERDSLKKYLYTCSAIAFLFWASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEP 545 (1333)
Q Consensus 474 ~~f~~~i~~~--------R~~E~~~l~~~~~~~a~~~~~~~~~p~lv~~~tF~~~~~~~~~Lt~~~vft~lalf~~l~~p 545 (1333)
+.=++++++. |.-....++- ........++....|.++.+ =.+..+.++-+.+.++-..|+.+...
T Consensus 265 ~~Er~~l~~~f~~v~~n~~~l~~~~~~l-~~~~~gy~~~s~v~P~li~a-----p~~f~g~i~~G~lmqa~~aF~~v~ss 338 (604)
T COG4178 265 KVERRRLDDRFDAVLGNWRRLVRAQIRL-TWFQLGYGWLSVVLPILIAA-----PRYFSGQITFGGLMQAVGAFGQVHSS 338 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh-HHhhhhhhHHHHHHHHHhcc-----HhhhcCcChHHHHHHHHHHHHHHHHH
Confidence 7655555442 2222111111 11111111111122322221 12457789999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccC--CCCC-CCCCCC------CCCCccEEEeeeEEEcCCcccccCCCcccccC
Q 000720 546 IYNLPELISMIAQTKVSLYRIQEFIKEDN--QKKP-ITEPTS------KASDVAIDIEAGEYAWDAREENFKKPTIKLTD 616 (1333)
Q Consensus 546 l~~lp~~i~~~~~a~vS~~RI~~fL~~~e--~~~~-~~~~~~------~~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~ 616 (1333)
+..+-..+..+.+-++++.|+.+|-..=| +.+. ....+. +..+..|.++|++..=|+. .+.+++
T Consensus 339 lswfi~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nl~l~~p~~-------~~ll~~ 411 (604)
T COG4178 339 LSWFIDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTGRRIDFDDNADHGITLENLSLRTPDG-------QTLLSE 411 (604)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCcccccCcccccccccccccceeEEeeeeEECCCC-------Ceeecc
Confidence 99999999999999999999999985433 1111 110000 1115689999999987765 477888
Q ss_pred -CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEEC-C-eEEEEcCCCCCCCCCHHHHhccCCc---CCHHHH
Q 000720 617 -KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVH-G-KKAYVPQSSWIQTGTIRENILFGKD---MRQSFY 690 (1333)
Q Consensus 617 -nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~-g-~iayv~Q~~~i~~~Tv~enI~~g~~---~~~~~~ 690 (1333)
|+++++||.+.|.||||||||||+++|+|+-|--+|++ ... + .+-|+||.|.++.||.||-|.+... +.++..
T Consensus 412 l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I-~~P~~~~~lflpQ~PY~p~GtLre~l~YP~~~~~~~d~~l 490 (604)
T COG4178 412 LNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRI-SMPADSALLFLPQRPYLPQGTLREALCYPNAAPDFSDAEL 490 (604)
T ss_pred ceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCce-ecCCCCceEEecCCCCCCCccHHHHHhCCCCCCCCChHHH
Confidence 99999999999999999999999999999999999986 443 3 4799999999999999999999753 567788
Q ss_pred HHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q 000720 691 EEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ 770 (1333)
Q Consensus 691 ~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~ 770 (1333)
.+++..|+|.+-.+.+.+-+ +=-..||+|||||+++||.++++|++++|||.|||||+.+...+++ .++..+.+
T Consensus 491 ~~vL~~vgL~~L~~rl~~~~-----~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q-~l~~~lp~ 564 (604)
T COG4178 491 VAVLHKVGLGDLAERLDEED-----RWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQ-LLKEELPD 564 (604)
T ss_pred HHHHHHcCcHHHHHHHhccC-----cHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHH-HHHhhCCC
Confidence 89999999987776655433 2345899999999999999999999999999999999999888876 45666789
Q ss_pred CeEEEecCchhhhhcCCEEEEEe
Q 000720 771 KTVLYTTHQLEFLDAADLVLVMK 793 (1333)
Q Consensus 771 ~TvIlvtH~~~~l~~aD~i~vl~ 793 (1333)
.|+|-|.|+.......++.+.+.
T Consensus 565 ~tvISV~Hr~tl~~~h~~~l~l~ 587 (604)
T COG4178 565 ATVISVGHRPTLWNFHSRQLELL 587 (604)
T ss_pred CEEEEeccchhhHHHHhhheeec
Confidence 99999999988776666555543
No 297
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7e-33 Score=314.21 Aligned_cols=202 Identities=24% Similarity=0.362 Sum_probs=160.7
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcC-----CCCcEEEECC----
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR-----ISGAAIKVHG---- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~-----~~G~~i~~~g---- 659 (1333)
.++++|++++|+.. +.+++ ||++++||+++|+||||||||||+++|+|+.+| ++|++ .++|
T Consensus 4 ~l~i~~v~~~~~~~--------~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I-~~~g~~~~ 74 (258)
T PRK14241 4 RIDVKDLNIYYGSF--------HAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEV-LLDGEDLY 74 (258)
T ss_pred cEEEeeEEEEECCE--------eeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEE-EECCEecc
Confidence 48899999999642 58999 999999999999999999999999999999874 68876 5443
Q ss_pred -----------eEEEEcCCCCCCC-CCHHHHhccCCcC----CHH----HHHHHHHHcccchHHHhhcCCCccccCCCCC
Q 000720 660 -----------KKAYVPQSSWIQT-GTIRENILFGKDM----RQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGI 719 (1333)
Q Consensus 660 -----------~iayv~Q~~~i~~-~Tv~enI~~g~~~----~~~----~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~ 719 (1333)
.++|++|++.++. .|++||+.++... ... +.+++++..++...+ ....+..+.
T Consensus 75 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~ 147 (258)
T PRK14241 75 GPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEV-------KDRLDKPGG 147 (258)
T ss_pred ccccChHHHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhh-------hhHhhCCcc
Confidence 3799999987665 6999999865321 111 122233333332111 123346788
Q ss_pred CCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhh-cCCEEEEEe-----
Q 000720 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMK----- 793 (1333)
Q Consensus 720 ~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~-~aD~i~vl~----- 793 (1333)
+||||||||++||||++++|+++||||||++||+.+.+.+.+ +++...+++|+|++||+++++. .||+|++|+
T Consensus 148 ~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~ 226 (258)
T PRK14241 148 GLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIED-LINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATG 226 (258)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHH-HHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccCC
Confidence 999999999999999999999999999999999999887765 4555556789999999999875 599999997
Q ss_pred -CCeEEEccChHHHHh
Q 000720 794 -DGKIEQSGKYEDLIA 808 (1333)
Q Consensus 794 -~G~i~~~g~~~~l~~ 808 (1333)
+|+|++.|+++++..
T Consensus 227 ~~g~i~~~~~~~~~~~ 242 (258)
T PRK14241 227 KPGRLVEIDDTEKIFS 242 (258)
T ss_pred CCceEEecCCHHHHHh
Confidence 899999999998865
No 298
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-32 Score=312.66 Aligned_cols=203 Identities=24% Similarity=0.349 Sum_probs=165.3
Q ss_pred ccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcC-----CCCcEEEECC---
Q 000720 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR-----ISGAAIKVHG--- 659 (1333)
Q Consensus 589 ~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~-----~~G~~i~~~g--- 659 (1333)
..+.+++.++.|.. .+.+++ ||++++||+++|+|+||||||||+++|+|+++| .+|++ .++|
T Consensus 7 ~~~~~~~~~~~~~~--------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i-~~~g~~i 77 (261)
T PRK14263 7 IVMDCKLDKIFYGN--------FMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHV-HFLGQDV 77 (261)
T ss_pred ceEEEEeEEEEeCC--------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEE-EECCEec
Confidence 46788888888853 368999 999999999999999999999999999999986 68875 4443
Q ss_pred ------------eEEEEcCCCCCCCCCHHHHhccCCcC---C---HHHHHHHHHHcccchHHHhhcCCCccccCCCCCCC
Q 000720 660 ------------KKAYVPQSSWIQTGTIRENILFGKDM---R---QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINL 721 (1333)
Q Consensus 660 ------------~iayv~Q~~~i~~~Tv~enI~~g~~~---~---~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~L 721 (1333)
.++|++|++.+++.|++||+.++... . .++.++.++..++..++.. ..++++.+|
T Consensus 78 ~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~-------~~~~~~~~L 150 (261)
T PRK14263 78 YGKGVDPVVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKD-------KLKVSGLSL 150 (261)
T ss_pred cccccchHhhhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhh-------hhhCCcccC
Confidence 37999999998889999999886432 1 1233444555554333221 234678899
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhh-cCCEEEEEe-------
Q 000720 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMK------- 793 (1333)
Q Consensus 722 SGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~-~aD~i~vl~------- 793 (1333)
|||||||++||||++++|+++||||||++||+.+...+.+.+ +...+++|+|++||+++.+. .||+|++|+
T Consensus 151 S~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l-~~~~~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~ 229 (261)
T PRK14263 151 SGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELM-VELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGT 229 (261)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHH-HHHhcCCeEEEEeCCHHHHHHhCCEEEEEeccccccc
Confidence 999999999999999999999999999999999988877654 44456789999999999875 499999996
Q ss_pred -CCeEEEccChHHHHh
Q 000720 794 -DGKIEQSGKYEDLIA 808 (1333)
Q Consensus 794 -~G~i~~~g~~~~l~~ 808 (1333)
+|++++.|+.+++.+
T Consensus 230 ~~G~i~~~g~~~~~~~ 245 (261)
T PRK14263 230 RTGYLVEMGPTAQIFQ 245 (261)
T ss_pred CCceEEEeCCHHHHHh
Confidence 899999999999875
No 299
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-32 Score=310.75 Aligned_cols=208 Identities=20% Similarity=0.302 Sum_probs=166.8
Q ss_pred ccEEEeeeEEEcCCccc------------ccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEE
Q 000720 589 VAIDIEAGEYAWDAREE------------NFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAI 655 (1333)
Q Consensus 589 ~~I~i~~~~fsw~~~~~------------~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i 655 (1333)
..|+++|++..|..... ......+.+++ ||++++||+++|+||||||||||+++|+|+++|.+|++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I- 81 (264)
T PRK13546 3 VSVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKV- 81 (264)
T ss_pred ceEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEE-
Confidence 46889999888876311 01133568899 99999999999999999999999999999999999996
Q ss_pred EECCeEEEEcCCCCCC-CCCHHHHhccCC---cCCHHHHH----HHHHHcccchHHHhhcCCCccccCCCCCCCChHHHH
Q 000720 656 KVHGKKAYVPQSSWIQ-TGTIRENILFGK---DMRQSFYE----EVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQ 727 (1333)
Q Consensus 656 ~~~g~iayv~Q~~~i~-~~Tv~enI~~g~---~~~~~~~~----~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkq 727 (1333)
.++|.+++++|++.+. ..|++||+.++. ..+.+... ++++..++ ...+...+.+|||||||
T Consensus 82 ~~~g~~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LS~Gq~q 150 (264)
T PRK13546 82 DRNGEVSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSEL-----------GEFIYQPVKKYSSGMRA 150 (264)
T ss_pred EECCEEeEEecccCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-----------chhhcCCcccCCHHHHH
Confidence 8899999999988765 469999997642 12222211 12222222 12344678899999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeCCeEEEccChHHH
Q 000720 728 RIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDL 806 (1333)
Q Consensus 728 Rv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~~g~~~~l 806 (1333)
|++||||++++|+++||||||++||+...+.+.+.+.....+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 151 rv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~ 230 (264)
T PRK13546 151 KLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKDYGELDDV 230 (264)
T ss_pred HHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHcCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999888877544433458999999999999865 999999999999999999998
Q ss_pred Hh
Q 000720 807 IA 808 (1333)
Q Consensus 807 ~~ 808 (1333)
..
T Consensus 231 ~~ 232 (264)
T PRK13546 231 LP 232 (264)
T ss_pred HH
Confidence 76
No 300
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-32 Score=313.77 Aligned_cols=198 Identities=25% Similarity=0.355 Sum_probs=160.5
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCC--------CCcEEEECC--
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRI--------SGAAIKVHG-- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~--------~G~~i~~~g-- 659 (1333)
++++|.+++|+. .+.+++ ||++++||+++|+||||||||||+++|+|+++|. +|++ .++|
T Consensus 2 l~~~nl~~~~~~--------~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i-~~~g~~ 72 (272)
T PRK13547 2 LTADHLHVARRH--------RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDV-TLNGEP 72 (272)
T ss_pred eEEEEEEEEECC--------EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEE-EECCEE
Confidence 678999999853 368999 9999999999999999999999999999999997 8876 6655
Q ss_pred -----------eEEEEcCCCC-CCCCCHHHHhccCCc-C-------CH---HHHHHHHHHcccchHHHhhcCCCccccCC
Q 000720 660 -----------KKAYVPQSSW-IQTGTIRENILFGKD-M-------RQ---SFYEEVLEGCALNQDIEMWADGDLSVVGE 716 (1333)
Q Consensus 660 -----------~iayv~Q~~~-i~~~Tv~enI~~g~~-~-------~~---~~~~~v~~~~~l~~d~~~~~~g~~t~ig~ 716 (1333)
.++|++|++. .+..|++||+.++.. . .. ++.+++++..++ .+..++
T Consensus 73 ~~~~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~ 141 (272)
T PRK13547 73 LAAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGA-----------TALVGR 141 (272)
T ss_pred cccCCHHHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCc-----------HhhhcC
Confidence 2689999975 567899999987531 1 01 112222222222 234557
Q ss_pred CCCCCChHHHHHHHHHHHHc---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEecCchhhhh-c
Q 000720 717 RGINLSGGQKQRIQLARAVY---------SNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS-QKTVLYTTHQLEFLD-A 785 (1333)
Q Consensus 717 ~g~~LSGGQkqRv~LARAl~---------~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~-~~TvIlvtH~~~~l~-~ 785 (1333)
.+.+||||||||++||||++ .+|+++||||||++||+.+.+.+.+.+.+...+ ++|+|++||+++.+. .
T Consensus 142 ~~~~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~ 221 (272)
T PRK13547 142 DVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARH 221 (272)
T ss_pred CcccCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHh
Confidence 78899999999999999999 599999999999999999988887654433344 789999999999986 5
Q ss_pred CCEEEEEeCCeEEEccChHHHHh
Q 000720 786 ADLVLVMKDGKIEQSGKYEDLIA 808 (1333)
Q Consensus 786 aD~i~vl~~G~i~~~g~~~~l~~ 808 (1333)
||++++|++|++++.|+.+++.+
T Consensus 222 ~d~i~~l~~G~i~~~g~~~~~~~ 244 (272)
T PRK13547 222 ADRIAMLADGAIVAHGAPADVLT 244 (272)
T ss_pred CCEEEEEECCeEEEecCHHHHcC
Confidence 99999999999999999888764
No 301
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-32 Score=311.68 Aligned_cols=204 Identities=22% Similarity=0.342 Sum_probs=162.5
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCC-----CCcEEEEC-----
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRI-----SGAAIKVH----- 658 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~-----~G~~i~~~----- 658 (1333)
.++++|++++|+. ...++| ||++++||+++|+|+||||||||+++|+|+.+|. +|++ .++
T Consensus 7 ~l~~~nl~~~~~~--------~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i-~~~g~~i~ 77 (261)
T PRK14258 7 AIKVNNLSFYYDT--------QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRV-EFFNQNIY 77 (261)
T ss_pred eEEEeeEEEEeCC--------eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceE-EECCEEhh
Confidence 5899999999953 257999 9999999999999999999999999999999985 6754 332
Q ss_pred ----------CeEEEEcCCCCCCCCCHHHHhccCCc---C-CH----HHHHHHHHHcccchHHHhhcCCCccccCCCCCC
Q 000720 659 ----------GKKAYVPQSSWIQTGTIRENILFGKD---M-RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1333)
Q Consensus 659 ----------g~iayv~Q~~~i~~~Tv~enI~~g~~---~-~~----~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~ 720 (1333)
..++|++|++.++..|++||+.++.. . .. ++..++++..++...+. ...++.+.+
T Consensus 78 ~~~~~~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~ 150 (261)
T PRK14258 78 ERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIK-------HKIHKSALD 150 (261)
T ss_pred ccccchHHhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhh-------hHhcCCccc
Confidence 24799999988777999999986421 1 11 11223333333322111 134567889
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEecCchhhhhc-CCEEEEEeC----
Q 000720 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA-ADLVLVMKD---- 794 (1333)
Q Consensus 721 LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~-~~~TvIlvtH~~~~l~~-aD~i~vl~~---- 794 (1333)
||||||||++||||++++|+++||||||++||+.+.+.+.+.+..... +++|+|++||+++.+.. ||+|++|++
T Consensus 151 LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~ 230 (261)
T PRK14258 151 LSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENR 230 (261)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCc
Confidence 999999999999999999999999999999999998877765443223 48999999999999865 999999999
Q ss_pred -CeEEEccChHHHHhh
Q 000720 795 -GKIEQSGKYEDLIAD 809 (1333)
Q Consensus 795 -G~i~~~g~~~~l~~~ 809 (1333)
|++++.|+++++.++
T Consensus 231 ~G~i~~~~~~~~~~~~ 246 (261)
T PRK14258 231 IGQLVEFGLTKKIFNS 246 (261)
T ss_pred CceEEEeCCHHHHHhC
Confidence 999999999998753
No 302
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=6.6e-33 Score=327.16 Aligned_cols=195 Identities=25% Similarity=0.384 Sum_probs=156.6
Q ss_pred eeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC--------------
Q 000720 595 AGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------------- 659 (1333)
Q Consensus 595 ~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g-------------- 659 (1333)
|.+++|+.. .+ + ||++++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 4 ~l~~~~~~~---------~~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I-~~~g~~i~~~~~~~~~~~ 72 (354)
T TIGR02142 4 RFSKRLGDF---------SL-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEI-VLNGRTLFDSRKGIFLPP 72 (354)
T ss_pred EEEEEECCE---------EE-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE-EECCEECccCccccccch
Confidence 567777432 24 7 99999999999999999999999999999999999986 4433
Q ss_pred ---eEEEEcCCCCCCC-CCHHHHhccCCcCC-H----HHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHH
Q 000720 660 ---KKAYVPQSSWIQT-GTIRENILFGKDMR-Q----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQ 730 (1333)
Q Consensus 660 ---~iayv~Q~~~i~~-~Tv~enI~~g~~~~-~----~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~ 730 (1333)
+++|++|++.++. .|++||+.|+.... . ++.++.++..++. ...++++.+||||||||++
T Consensus 73 ~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~-----------~~~~~~~~~LSgGqkqRva 141 (354)
T TIGR02142 73 EKRRIGYVFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIG-----------HLLGRLPGRLSGGEKQRVA 141 (354)
T ss_pred hhCCeEEEecCCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCCh-----------hHhcCChhhCCHHHHHHHH
Confidence 3799999998765 69999999864321 1 1223333333332 2345678899999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEecCchhhhhc-CCEEEEEeCCeEEEccChHHHHh
Q 000720 731 LARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS-QKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDLIA 808 (1333)
Q Consensus 731 LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~-~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~~g~~~~l~~ 808 (1333)
||||++.+|+++||||||++||+..++.+.+.+.+...+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 142 lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 221 (354)
T TIGR02142 142 IGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWA 221 (354)
T ss_pred HHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHhc
Confidence 999999999999999999999999988887655443344 7899999999998864 99999999999999999999876
Q ss_pred hcc
Q 000720 809 DQN 811 (1333)
Q Consensus 809 ~~~ 811 (1333)
+..
T Consensus 222 ~~~ 224 (354)
T TIGR02142 222 SPD 224 (354)
T ss_pred CcC
Confidence 443
No 303
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=1.5e-32 Score=312.80 Aligned_cols=208 Identities=25% Similarity=0.336 Sum_probs=161.3
Q ss_pred cEEEeeeEEEcCCcc-cccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC--------
Q 000720 590 AIDIEAGEYAWDARE-ENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~-~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g-------- 659 (1333)
.|+++|+++.|+... ...+.+.+.++| ||++++||+++|+||||||||||+++|+|+.+|++|++ .++|
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i-~~~g~~~~~~~~ 81 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNV-SWRGEPLAKLNR 81 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEE-EECCEeccccCh
Confidence 378999999997310 000012468999 99999999999999999999999999999999999986 5443
Q ss_pred --------eEEEEcCCCC--C-CCCCHHHHhccCC----cCCH----HHHHHHHHHcccchHHHhhcCCCccccCCCCCC
Q 000720 660 --------KKAYVPQSSW--I-QTGTIRENILFGK----DMRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1333)
Q Consensus 660 --------~iayv~Q~~~--i-~~~Tv~enI~~g~----~~~~----~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~ 720 (1333)
.++|++|++. + .+.|++||+.+.. ..+. .+.++.++.+++.. ...+.++.+
T Consensus 82 ~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~----------~~~~~~~~~ 151 (268)
T PRK10419 82 AQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDD----------SVLDKRPPQ 151 (268)
T ss_pred hHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCCh----------hHhhCCCcc
Confidence 4899999973 3 3579999986531 1111 12233333333221 123467889
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEecCchhhhhc-CCEEEEEeCCeEE
Q 000720 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS-QKTVLYTTHQLEFLDA-ADLVLVMKDGKIE 798 (1333)
Q Consensus 721 LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~-~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~ 798 (1333)
||||||||++||||++.+|+++||||||++||+.+.+.+.+.+.....+ ++|+|++||+++.+.. ||++++|++|+++
T Consensus 152 LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~ 231 (268)
T PRK10419 152 LSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIV 231 (268)
T ss_pred CChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEe
Confidence 9999999999999999999999999999999999988776644333333 7899999999999875 9999999999999
Q ss_pred EccChHHHHh
Q 000720 799 QSGKYEDLIA 808 (1333)
Q Consensus 799 ~~g~~~~l~~ 808 (1333)
+.|+.+++..
T Consensus 232 ~~g~~~~~~~ 241 (268)
T PRK10419 232 ETQPVGDKLT 241 (268)
T ss_pred eeCChhhccC
Confidence 9999998875
No 304
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.1e-33 Score=294.02 Aligned_cols=158 Identities=31% Similarity=0.505 Sum_probs=138.9
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC----------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g---------- 659 (1333)
++++|++++|+. .+.+++ |+++++||+++|+||||||||||+++|+|+++|.+|++ .++|
T Consensus 1 l~~~~l~~~~~~--------~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i-~~~g~~~~~~~~~~ 71 (173)
T cd03230 1 IEVRNLSKRYGK--------KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEI-KVLGKDIKKEPEEV 71 (173)
T ss_pred CEEEEEEEEECC--------eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEE-EECCEEcccchHhh
Confidence 468899999863 258999 99999999999999999999999999999999999986 5544
Q ss_pred --eEEEEcCCCCCCC-CCHHHHhccCCcCCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHHc
Q 000720 660 --KKAYVPQSSWIQT-GTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVY 736 (1333)
Q Consensus 660 --~iayv~Q~~~i~~-~Tv~enI~~g~~~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~ 736 (1333)
.++|++|++.++. .|++||+. ||||||||++||||++
T Consensus 72 ~~~i~~~~q~~~~~~~~tv~~~~~----------------------------------------LS~G~~qrv~laral~ 111 (173)
T cd03230 72 KRRIGYLPEEPSLYENLTVRENLK----------------------------------------LSGGMKQRLALAQALL 111 (173)
T ss_pred hccEEEEecCCccccCCcHHHHhh----------------------------------------cCHHHHHHHHHHHHHH
Confidence 4799999988765 49999973 9999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhh-cCCEEEEEeCCeE
Q 000720 737 SNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMKDGKI 797 (1333)
Q Consensus 737 ~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~-~aD~i~vl~~G~i 797 (1333)
.+|+++||||||++||+.+++.+.+.+.+...++.|+|++||+.+++. .||++++|++|++
T Consensus 112 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 112 HDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173 (173)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence 999999999999999999988887755444445789999999999987 5999999999974
No 305
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.8e-33 Score=285.46 Aligned_cols=202 Identities=27% Similarity=0.383 Sum_probs=165.6
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECCe---------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK--------- 660 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g~--------- 660 (1333)
|+.+|.+++-.. +..+.+ ++++++||.++|+|||||||||||+.|.||+.|.+|++ .++|.
T Consensus 2 i~a~nls~~~~G--------r~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v-~~~g~~l~~~~~~~ 72 (259)
T COG4559 2 IRAENLSYSLAG--------RRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEV-TLNGVPLNSWPPEE 72 (259)
T ss_pred eeeeeeEEEeec--------ceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeE-eeCCcChhhCCHHH
Confidence 567788777643 357888 99999999999999999999999999999999999986 77763
Q ss_pred ----EEEEcCCCCC-CCCCHHHHhccCCcCC-----HHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHH
Q 000720 661 ----KAYVPQSSWI-QTGTIRENILFGKDMR-----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQ 730 (1333)
Q Consensus 661 ----iayv~Q~~~i-~~~Tv~enI~~g~~~~-----~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~ 730 (1333)
-|.+||+..+ |..||+|-+.+|+-.. ....+++.++|-...|+..+.. +...+||||+||||.
T Consensus 73 lA~~raVlpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~-------R~y~~LSGGEqQRVq 145 (259)
T COG4559 73 LARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAG-------RDYRTLSGGEQQRVQ 145 (259)
T ss_pred HHHHhhhcccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhc-------cchhhcCchHHHHHH
Confidence 3899998765 8899999999986322 1233444444444445554443 446789999999999
Q ss_pred HHHHHcc------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhh-hcCCEEEEEeCCeEEEccCh
Q 000720 731 LARAVYS------NSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFL-DAADLVLVMKDGKIEQSGKY 803 (1333)
Q Consensus 731 LARAl~~------~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l-~~aD~i~vl~~G~i~~~g~~ 803 (1333)
|||.|.+ ++++++||||||+||...+.++++....-..+|..|+.|-||++.. .+||+|++|++|+++..|++
T Consensus 146 lARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~p 225 (259)
T COG4559 146 LARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSP 225 (259)
T ss_pred HHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeEeecCCH
Confidence 9999986 5569999999999999999988876555556789999999999986 57999999999999999999
Q ss_pred HHHHh
Q 000720 804 EDLIA 808 (1333)
Q Consensus 804 ~~l~~ 808 (1333)
++.+.
T Consensus 226 ~~vlt 230 (259)
T COG4559 226 QDVLT 230 (259)
T ss_pred HHhcC
Confidence 99986
No 306
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=2.1e-32 Score=309.57 Aligned_cols=203 Identities=20% Similarity=0.277 Sum_probs=158.7
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC---------
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g--------- 659 (1333)
.++++|+++.|+.. ..+++ ||++++||+++|+||||||||||+++|+|+.+|.+|++ .++|
T Consensus 3 ~l~~~~l~~~~~~~--------~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~g~~~~~~~~~ 73 (253)
T TIGR02323 3 LLQVSGLSKSYGGG--------KGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTA-TYIMRSGAELELY 73 (253)
T ss_pred eEEEeeeEEEeCCc--------eEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEE-EEecccccccccc
Confidence 48899999999643 47899 99999999999999999999999999999999999986 4432
Q ss_pred -------------eEEEEcCCCC--C-CCCCHHHHhccCC-----cCCHHHHHHHHHHcccchHHHhhcCCCccccCCCC
Q 000720 660 -------------KKAYVPQSSW--I-QTGTIRENILFGK-----DMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERG 718 (1333)
Q Consensus 660 -------------~iayv~Q~~~--i-~~~Tv~enI~~g~-----~~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g 718 (1333)
.++|++|++. + +..|+.||+.+.. .......+++ .+-++.+... .+..+..+
T Consensus 74 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~------~~~l~~l~l~-~~~~~~~~ 146 (253)
T TIGR02323 74 QLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAA------HDWLEEVEID-PTRIDDLP 146 (253)
T ss_pred cCCHHHHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHH------HHHHHHcCCC-hhhhhcCc
Confidence 3799999974 2 3458899985421 1111111111 1112222111 13456778
Q ss_pred CCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEecCchhhhhc-CCEEEEEeCCe
Q 000720 719 INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA-ADLVLVMKDGK 796 (1333)
Q Consensus 719 ~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~-~~~TvIlvtH~~~~l~~-aD~i~vl~~G~ 796 (1333)
.+||||||||++||||++++|+++||||||++||+.+.+.+.+.+.+... .+.|+|++||+++++.. ||++++|++|+
T Consensus 147 ~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~ 226 (253)
T TIGR02323 147 RAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGR 226 (253)
T ss_pred hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCE
Confidence 89999999999999999999999999999999999998887765444333 37999999999999874 99999999999
Q ss_pred EEEccChHHHHh
Q 000720 797 IEQSGKYEDLIA 808 (1333)
Q Consensus 797 i~~~g~~~~l~~ 808 (1333)
+++.|+.+++..
T Consensus 227 i~~~~~~~~~~~ 238 (253)
T TIGR02323 227 VVESGLTDQVLD 238 (253)
T ss_pred EEEECCHHHHhc
Confidence 999999988865
No 307
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-32 Score=310.19 Aligned_cols=206 Identities=24% Similarity=0.318 Sum_probs=163.2
Q ss_pred CccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEEC--------
Q 000720 588 DVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVH-------- 658 (1333)
Q Consensus 588 ~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~-------- 658 (1333)
...++++|++++++. .+.++| ||++++||+++|+|+||||||||+++|+|+.+|++|++ .++
T Consensus 8 ~~~i~~~~~~~~~~~--------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v-~~~G~~~~~g~ 78 (257)
T PRK14246 8 EDVFNISRLYLYIND--------KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKI-KVDGKVLYFGK 78 (257)
T ss_pred hhheeeeeEEEecCC--------ceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCce-eEcCEEEECCc
Confidence 346999999999864 357999 99999999999999999999999999999999998754 322
Q ss_pred -----------CeEEEEcCCCCCCC-CCHHHHhccCCc---C-CHHHH----HHHHHHcccchHHHhhcCCCccccCCCC
Q 000720 659 -----------GKKAYVPQSSWIQT-GTIRENILFGKD---M-RQSFY----EEVLEGCALNQDIEMWADGDLSVVGERG 718 (1333)
Q Consensus 659 -----------g~iayv~Q~~~i~~-~Tv~enI~~g~~---~-~~~~~----~~v~~~~~l~~d~~~~~~g~~t~ig~~g 718 (1333)
.+++|++|+|.++. .|++||+.++.. . .++.. .+.++..++.+.+ ....++.+
T Consensus 79 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------~~~~~~~~ 151 (257)
T PRK14246 79 DIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEV-------YDRLNSPA 151 (257)
T ss_pred ccccCCHHHHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccc-------hhhhcCCc
Confidence 24799999998765 599999987532 1 11111 2222222222111 12245678
Q ss_pred CCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhh-cCCEEEEEeCCeE
Q 000720 719 INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMKDGKI 797 (1333)
Q Consensus 719 ~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~-~aD~i~vl~~G~i 797 (1333)
..||||||||++||||++++|++++|||||++||+.+.+.+.+ ++....++.|+|++||+++++. .||++++|++|++
T Consensus 152 ~~LS~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~-~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~g~i 230 (257)
T PRK14246 152 SQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEK-LITELKNEIAIVIVSHNPQQVARVADYVAFLYNGEL 230 (257)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHH-HHHHHhcCcEEEEEECCHHHHHHhCCEEEEEECCEE
Confidence 8999999999999999999999999999999999999877765 4455555799999999999985 5999999999999
Q ss_pred EEccChHHHHhhc
Q 000720 798 EQSGKYEDLIADQ 810 (1333)
Q Consensus 798 ~~~g~~~~l~~~~ 810 (1333)
++.|+.+++.+++
T Consensus 231 ~~~g~~~~~~~~~ 243 (257)
T PRK14246 231 VEWGSSNEIFTSP 243 (257)
T ss_pred EEECCHHHHHhCC
Confidence 9999999887633
No 308
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=100.00 E-value=8.7e-33 Score=307.23 Aligned_cols=200 Identities=28% Similarity=0.380 Sum_probs=154.1
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCc---CCCCcEEEECC------
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP---RISGAAIKVHG------ 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~---~~~G~~i~~~g------ 659 (1333)
.+.++|++|.++..+ ...+.++| ||++++||+++|+||||||||||+++|+|+++ |++|++ .++|
T Consensus 3 ~~~~~~~~~~~~~~~----~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i-~~~g~~~~~~ 77 (226)
T cd03234 3 VLPWWDVGLKAKNWN----KYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQI-LFNGQPRKPD 77 (226)
T ss_pred cceeecceeeeecCc----cccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEE-EECCEECChH
Confidence 356899999997531 13578999 99999999999999999999999999999999 899986 5554
Q ss_pred ----eEEEEcCCCCCCCC-CHHHHhccCCcCC-----HHHHH-HHHHHcccchHHHhhcCCCc-cccCCCCCCCChHHHH
Q 000720 660 ----KKAYVPQSSWIQTG-TIRENILFGKDMR-----QSFYE-EVLEGCALNQDIEMWADGDL-SVVGERGINLSGGQKQ 727 (1333)
Q Consensus 660 ----~iayv~Q~~~i~~~-Tv~enI~~g~~~~-----~~~~~-~v~~~~~l~~d~~~~~~g~~-t~ig~~g~~LSGGQkq 727 (1333)
.++|++|++.+++. |++||+.++.... ..... +..+. ..++.... ....+...+|||||||
T Consensus 78 ~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~-------~~l~~~~l~~~~~~~~~~LS~G~~q 150 (226)
T cd03234 78 QFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVED-------VLLRDLALTRIGGNLVKGISGGERR 150 (226)
T ss_pred HhcccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHH-------HHHHhhcchhhhcccccCcCHHHHH
Confidence 48999999987664 9999998753211 00000 00000 01222222 2234567899999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCch-hhh-hcCCEEEEEeCCeEEEcc
Q 000720 728 RIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQL-EFL-DAADLVLVMKDGKIEQSG 801 (1333)
Q Consensus 728 Rv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~-~~l-~~aD~i~vl~~G~i~~~g 801 (1333)
|++||||++++|+++||||||++||+.++..+.+.+.+...+++|+|++||++ +.+ +.||++++|++|++++.|
T Consensus 151 rl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 151 RVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 99999999999999999999999999998877764443334578999999998 455 569999999999998765
No 309
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=100.00 E-value=1.8e-32 Score=305.37 Aligned_cols=187 Identities=27% Similarity=0.357 Sum_probs=148.9
Q ss_pred ccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcC----CCCcEEEECC-----------eEEEEcCCCC--CC-CCC
Q 000720 614 LTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR----ISGAAIKVHG-----------KKAYVPQSSW--IQ-TGT 674 (1333)
Q Consensus 614 L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~----~~G~~i~~~g-----------~iayv~Q~~~--i~-~~T 674 (1333)
+++ |+++++||+++|+||||||||||+++|+|+++| ++|++ .++| .++|++|++. +. ..|
T Consensus 2 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i-~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t 80 (230)
T TIGR02770 2 VQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEI-LLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFT 80 (230)
T ss_pred ccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEE-EECCEechhhhhhhheeEEEecCchhhcCcccC
Confidence 678 999999999999999999999999999999998 89986 5544 5899999984 32 369
Q ss_pred HHHHhccCCcC----CH---HHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCC
Q 000720 675 IRENILFGKDM----RQ---SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDP 747 (1333)
Q Consensus 675 v~enI~~g~~~----~~---~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDEP 747 (1333)
+.||+.+.... .. ++..+.++.+++.+ + .+..++.+.+||||||||++||||++++|+++|||||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~-~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEP 152 (230)
T TIGR02770 81 MGNHAIETLRSLGKLSKQARALILEALEAVGLPD-------P-EEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEP 152 (230)
T ss_pred HHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCc-------h-HHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 99998653211 11 12333444443321 0 1234567889999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHh-CCCeEEEecCchhhhh-cCCEEEEEeCCeEEEccChHHHHhh
Q 000720 748 FSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKYEDLIAD 809 (1333)
Q Consensus 748 ~saLD~~~~~~l~~~~~~~~~-~~~TvIlvtH~~~~l~-~aD~i~vl~~G~i~~~g~~~~l~~~ 809 (1333)
|++||+.+.+.+.+.+.+... .++|+|++||+++.+. .||++++|++|++.+.|+++++...
T Consensus 153 t~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 216 (230)
T TIGR02770 153 TTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYN 216 (230)
T ss_pred ccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 999999998877765443333 3789999999999986 5999999999999999999998753
No 310
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.5e-32 Score=302.86 Aligned_cols=184 Identities=29% Similarity=0.421 Sum_probs=147.4
Q ss_pred eeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC--------------
Q 000720 595 AGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------------- 659 (1333)
Q Consensus 595 ~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g-------------- 659 (1333)
|.+++|+.. . . | ||++++ |+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 5 ~l~~~~~~~--------~-~-~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~g~~~~~~~~~~~~~~ 72 (214)
T cd03297 5 DIEKRLPDF--------T-L-KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTI-VLNGTVLFDSRKKINLPP 72 (214)
T ss_pred eeeEecCCe--------e-e-CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceE-EECCEecccccchhhhhh
Confidence 677777542 2 2 8 999999 9999999999999999999999999999986 4443
Q ss_pred ---eEEEEcCCCCCC-CCCHHHHhccCCcC-C----HHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHH
Q 000720 660 ---KKAYVPQSSWIQ-TGTIRENILFGKDM-R----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQ 730 (1333)
Q Consensus 660 ---~iayv~Q~~~i~-~~Tv~enI~~g~~~-~----~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~ 730 (1333)
.++|++|++.++ +.|++||+.++... . +++.++.++..++. ...++++.+||||||||++
T Consensus 73 ~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G~~qrv~ 141 (214)
T cd03297 73 QQRKIGLVFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLD-----------HLLNRYPAQLSGGEKQRVA 141 (214)
T ss_pred HhhcEEEEecCCccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCH-----------hHhhcCcccCCHHHHHHHH
Confidence 479999999876 46999999875432 1 12223333433332 2334678899999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEecCchhhhh-cCCEEEEEeCCeEEEcc
Q 000720 731 LARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS-QKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSG 801 (1333)
Q Consensus 731 LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~-~~TvIlvtH~~~~l~-~aD~i~vl~~G~i~~~g 801 (1333)
||||++.+|+++||||||++||+.+.+.+.+.+.+...+ ++|+|++||+++.+. .||++++|++|++++.|
T Consensus 142 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 142 LARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999988877654443344 789999999999985 59999999999998765
No 311
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=100.00 E-value=1.3e-32 Score=298.19 Aligned_cols=176 Identities=24% Similarity=0.400 Sum_probs=146.3
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCC--cCCCCcEEEECC-------
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEI--PRISGAAIKVHG------- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~--~~~~G~~i~~~g------- 659 (1333)
.++++|++|+|+.... ....+.+++ |+++++||+++|+||||||||||+++|+|+. +|.+|++ .++|
T Consensus 3 ~l~~~~ls~~~~~~~~--~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i-~~~g~~~~~~~ 79 (194)
T cd03213 3 TLSFRNLTVTVKSSPS--KSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEV-LINGRPLDKRS 79 (194)
T ss_pred EEEEEeeEEEEecCCC--cccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEE-EECCEeCchHh
Confidence 4889999999974200 012468999 9999999999999999999999999999999 9999986 5544
Q ss_pred ---eEEEEcCCCCCCC-CCHHHHhccCCcCCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHH
Q 000720 660 ---KKAYVPQSSWIQT-GTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAV 735 (1333)
Q Consensus 660 ---~iayv~Q~~~i~~-~Tv~enI~~g~~~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl 735 (1333)
.++|++|++.++. .|++||+.++... .+||||||||++||||+
T Consensus 80 ~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~---------------------------------~~LS~G~~qrv~laral 126 (194)
T cd03213 80 FRKIIGYVPQDDILHPTLTVRETLMFAAKL---------------------------------RGLSGGERKRVSIALEL 126 (194)
T ss_pred hhheEEEccCcccCCCCCcHHHHHHHHHHh---------------------------------ccCCHHHHHHHHHHHHH
Confidence 4799999987664 6999999643110 08999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchh-hhh-cCCEEEEEeCCeEEEcc
Q 000720 736 YSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLE-FLD-AADLVLVMKDGKIEQSG 801 (1333)
Q Consensus 736 ~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~-~l~-~aD~i~vl~~G~i~~~g 801 (1333)
+.+|+++||||||++||+.+.+.+.+.+.+...+++|+|++||+++ .+. .||++++|++|++++.|
T Consensus 127 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~ 194 (194)
T cd03213 127 VSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194 (194)
T ss_pred HcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence 9999999999999999999988877654433345899999999996 554 59999999999998654
No 312
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=2.3e-30 Score=297.04 Aligned_cols=387 Identities=16% Similarity=0.107 Sum_probs=267.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCcchhHHHHhccHHHHHhHHHHHHHHHHHHHHH
Q 000720 935 FLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQ 1014 (1333)
Q Consensus 935 ~l~~~~~i~~~~~~~~~~~~~~~~s~~L~~~ll~~il~ap~~fFd~tp~GrIlnRfs~Di~~vd~~l~~~l~~~~~~~~~ 1014 (1333)
++.++..++-.+|+..+..++.+.-..+..+.|...+++|..-=...+....+ +|++++..++...-...+...=-
T Consensus 71 ~ly~~~glLd~iR~~~l~Rig~~lD~~L~~~v~~a~~~~~l~~~~~g~~~Q~L----rDL~qvR~Fltg~g~~A~fDaPW 146 (580)
T COG4618 71 GLYAFQGLLDAIRSRVLVRIGERLDRQLNGPVFAASFSAPLLRRGSGDGLQPL----RDLDQVRQFLTGTGLTAFFDAPW 146 (580)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHhhcCCCccccch----hhHHHHHHHHcCCCcchhcCCch
Confidence 34455677888999999999999999999999999988887643333333333 48888888876533222222222
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhchHHHHHHHHhcchHHHHhcccHHHHHHHHHH
Q 000720 1015 LLSIIILMSQAAWQVFPLFLVILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHS 1094 (1333)
Q Consensus 1015 ~l~~ivv~~~~~~~l~lv~ipl~~~~~~~~~~y~~~srel~rl~~~~~spl~~~~~Etl~G~~tIRaf~~e~~f~~~~~~ 1094 (1333)
.-.-+++++...|++.++.+.-.++.+.+...--...|+--+...+....-.++..-+..+..+|+|.|..++..+++.+
T Consensus 147 ~P~yl~v~fl~Hp~lG~~a~~ga~iLv~la~ln~~~t~~p~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~~ 226 (580)
T COG4618 147 MPLYLAVIFLFHPWLGLIALAGAIILVVLALLNERATRKPLKEASEASIRANQLADATLRNAEVIEAMGMLGNLAKRWGR 226 (580)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHHHH
Confidence 22233445555666665544433333222222222333333444555566678888999999999999998888777776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000720 1095 LIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLIIL-VTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKM 1173 (1333)
Q Consensus 1095 ~~d~~~~~~~~~~~~~~wl~~rl~ll~~~~~~~~~~~~-~~~~~~~~~~g~~gl~l~y~l~l~~~l~~~v~~~~~le~~~ 1173 (1333)
....+....-...-.+.-++...-.+-.+.-..++..+ .+...+.+++|.+-..-...-..-.++-..+..|.+.-...
T Consensus 227 ~~~~~L~~~~~asd~~~~~~~~Sr~~Rm~lQs~iLg~GA~Lvi~ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~Ar 306 (580)
T COG4618 227 FNAAYLSAQERASDRNGAFGALSRALRMALQSAVLGLGAWLVIKGEITPGMMIAGSILSGRALAPIDLAIANWKQFVAAR 306 (580)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcceeeEEcCcCCcchhhHHHHHhhhhhccHHHHHHHHHHHHHHH
Confidence 66655544333322222222221111111222222222 23345677777543322222223344566788899999999
Q ss_pred hHHHHHHHhhcCCCCCCcccCCCCCCCCCCCcccEEEEEEEEEECCCCCCccccceEEecCCcEEEEECCCCccHHHHHH
Q 000720 1174 ISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQ 1253 (1333)
Q Consensus 1174 ~SveRI~~~~~~p~E~~~~~~~~~~~~~wp~~G~I~f~nVsf~Y~~~~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~ 1253 (1333)
.|..|+.+.++..++..... ..|. .+|.+..+++++.=++...++|+||||+++|||-+|||||||||||||.+
T Consensus 307 ~s~~Rl~~lL~~~p~~~~~m---~LP~---P~g~L~Ve~l~~~PPg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR 380 (580)
T COG4618 307 QSYKRLNELLAELPAAAERM---PLPA---PQGALSVERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLAR 380 (580)
T ss_pred HHHHHHHHHHHhCccccCCC---CCCC---CCceeeEeeeeecCCCCCCcceecceeEecCCceEEEECCCCccHHHHHH
Confidence 99999999987544432111 1111 26999999999865555558999999999999999999999999999999
Q ss_pred HHhcccCCCCCeEEEcCEeCCCCChHHHhhcCeEecccccccccchhhhcCCCC-CCCHHHHHHHHHhCCCCcccccCC
Q 000720 1254 ALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLE-QHSDQEIWEVKISKLLTHKSYQCE 1331 (1333)
Q Consensus 1254 lL~Rl~ep~~G~I~IDGvdI~~i~l~~LRs~isiVpQdp~LF~GTIR~NLdp~~-~~sDeeI~~aL~~~~L~~~~~~~~ 1331 (1333)
+|.+.+.|.+|.|.+||-|+++.+.++|=++|||.|||--||+|||+|||.-|+ +.++|.|.||.+.++.+|.+...|
T Consensus 381 ~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP 459 (580)
T COG4618 381 LLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLP 459 (580)
T ss_pred HHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccceecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCc
Confidence 999999999999999999999999999999999999999999999999998766 788888999999999988765443
No 313
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=100.00 E-value=8.9e-33 Score=307.76 Aligned_cols=181 Identities=31% Similarity=0.438 Sum_probs=145.3
Q ss_pred ccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECCe--------EEEEcCCCCCCC-CCHHHHhccCC
Q 000720 614 LTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK--------KAYVPQSSWIQT-GTIRENILFGK 683 (1333)
Q Consensus 614 L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g~--------iayv~Q~~~i~~-~Tv~enI~~g~ 683 (1333)
+++ ||++++||+++|+||||||||||+++|+|+++|++|++ .++|+ .+|++|++.++. .|++||+.++.
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i-~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~~~ 79 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGV-ILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIALAV 79 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE-EECCEECCCCChhheEEecCcccCCCCCHHHHHHHHH
Confidence 467 99999999999999999999999999999999999986 67663 489999987665 79999998742
Q ss_pred -----cCCHH----HHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHH
Q 000720 684 -----DMRQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAH 754 (1333)
Q Consensus 684 -----~~~~~----~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~ 754 (1333)
..++. +.++.++.+++. ...+..+.+||||||||++||||++++|+++||||||++||+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~ 148 (230)
T TIGR01184 80 DRVLPDLSKSERRAIVEEHIALVGLT-----------EAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDAL 148 (230)
T ss_pred HhcccCCCHHHHHHHHHHHHHHcCCH-----------HHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHH
Confidence 12211 122333333332 1234567899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhC-CCeEEEecCchhhhhc-CCEEEEEeCCeEEEccChHHH
Q 000720 755 TGTHLFKQCLMGLLS-QKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDL 806 (1333)
Q Consensus 755 ~~~~l~~~~~~~~~~-~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~~g~~~~l 806 (1333)
..+.+.+.+.+...+ ++|+|++||+++.+.. ||+|++|++|++++.|+..++
T Consensus 149 ~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 202 (230)
T TIGR01184 149 TRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILEV 202 (230)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEecccCceec
Confidence 988887654443333 7899999999998754 999999999999988865544
No 314
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=100.00 E-value=1.7e-32 Score=303.58 Aligned_cols=191 Identities=30% Similarity=0.384 Sum_probs=153.3
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC----------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g---------- 659 (1333)
++++|+++.|+..+ .....+++ ||++++||+++|+|+||||||||+++|+|.++|++|++ .++|
T Consensus 2 l~~~~l~~~~~~~~----~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i-~~~g~~~~~~~~~~ 76 (220)
T TIGR02982 2 ISIRNLNHYYGHGS----LRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSL-KVLGQELYGASEKE 76 (220)
T ss_pred EEEEEEEEEccCCC----cceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEE-EECCEEhHhcCHhH
Confidence 68899999996430 12468999 99999999999999999999999999999999999986 5543
Q ss_pred ------eEEEEcCCCCCCC-CCHHHHhccCCcC----CHH----HHHHHHHHcccchHHHhhcCCCccccCCCCCCCChH
Q 000720 660 ------KKAYVPQSSWIQT-GTIRENILFGKDM----RQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGG 724 (1333)
Q Consensus 660 ------~iayv~Q~~~i~~-~Tv~enI~~g~~~----~~~----~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGG 724 (1333)
.++|++|++.++. .|+.||+.++... ..+ +..+.++.+++.+ .....+.+||||
T Consensus 77 ~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~lS~G 145 (220)
T TIGR02982 77 LVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGD-----------HLDYYPHNLSGG 145 (220)
T ss_pred HHHHHhheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChh-----------hhhcChhhCCHH
Confidence 4799999997765 7999999875421 111 2333344443322 234567799999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEecCchhhhhcCCEEEEEeCCeE
Q 000720 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDAADLVLVMKDGKI 797 (1333)
Q Consensus 725 QkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~-~~~TvIlvtH~~~~l~~aD~i~vl~~G~i 797 (1333)
||||++||||++++|+++||||||++||+.++..+.+.+.+... +++|+|++||+++..+.||+|++|++|++
T Consensus 146 ~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 146 QKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRILDVADRIVHMEDGKL 219 (220)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEEEEECCEE
Confidence 99999999999999999999999999999998887765433333 47999999999997777999999999986
No 315
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.4e-32 Score=279.44 Aligned_cols=194 Identities=26% Similarity=0.401 Sum_probs=155.3
Q ss_pred EEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECCe--------EE
Q 000720 592 DIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK--------KA 662 (1333)
Q Consensus 592 ~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g~--------ia 662 (1333)
.+.+.+.+|+.. ..+.++| |++|.+||.++++||+||||||||+.++|+++|..|.+ .++++ -|
T Consensus 5 ~~~~~sl~y~g~------~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i-~l~~r~i~gPgaerg 77 (259)
T COG4525 5 NVSHLSLSYEGK------PRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSI-QLNGRRIEGPGAERG 77 (259)
T ss_pred ehhheEEecCCc------chhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceE-EECCEeccCCCccce
Confidence 345677788764 3568999 99999999999999999999999999999999999986 77765 49
Q ss_pred EEcCCCCC-CCCCHHHHhccCCcCC---HH-HH---HHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHH
Q 000720 663 YVPQSSWI-QTGTIRENILFGKDMR---QS-FY---EEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARA 734 (1333)
Q Consensus 663 yv~Q~~~i-~~~Tv~enI~~g~~~~---~~-~~---~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARA 734 (1333)
.|+|++-+ +-.|+.||+.||.... +. +. .+.+...+|.+ .-.....+||||||||+.||||
T Consensus 78 vVFQ~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~-----------~~~~~i~qLSGGmrQRvGiARA 146 (259)
T COG4525 78 VVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEG-----------AEHKYIWQLSGGMRQRVGIARA 146 (259)
T ss_pred eEeccCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCccc-----------ccccceEeecchHHHHHHHHHH
Confidence 99999764 5579999999996532 22 21 22222222221 1125678999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEecCchhhhh-cCCEEEEEe--CCeEEEccCh
Q 000720 735 VYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLD-AADLVLVMK--DGKIEQSGKY 803 (1333)
Q Consensus 735 l~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~-~~~TvIlvtH~~~~l~-~aD~i~vl~--~G~i~~~g~~ 803 (1333)
|..+|+.++||||++|||+-+++++-+.++..+. .||.+++|||++++.- -|++++||. .|+|++.-++
T Consensus 147 La~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlflatrLvvlsp~pgRvv~~~~~ 219 (259)
T COG4525 147 LAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRVVERLPL 219 (259)
T ss_pred hhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhheeEEecCCCceeeEecCC
Confidence 9999999999999999999998887665555554 5899999999999864 599999997 6899876444
No 316
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.9e-32 Score=297.44 Aligned_cols=180 Identities=23% Similarity=0.292 Sum_probs=146.0
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCc---CCCCcEEEECC------
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP---RISGAAIKVHG------ 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~---~~~G~~i~~~g------ 659 (1333)
.+.++|++|.|+... ...+.+++ ||++++||+++|+||||||||||+++|+|+++ |++|++ .++|
T Consensus 3 ~~~~~~~~~~~~~~~----~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i-~i~g~~~~~~ 77 (202)
T cd03233 3 TLSWRNISFTTGKGR----SKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDI-HYNGIPYKEF 77 (202)
T ss_pred eEEEEccEEEeccCC----CCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEE-EECCEECccc
Confidence 368999999998641 24568999 99999999999999999999999999999999 889976 5544
Q ss_pred ------eEEEEcCCCCCCC-CCHHHHhccCCcCCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHH
Q 000720 660 ------KKAYVPQSSWIQT-GTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLA 732 (1333)
Q Consensus 660 ------~iayv~Q~~~i~~-~Tv~enI~~g~~~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LA 732 (1333)
.++|++|++.++. .|++||+.++.... ..++...||||||||++||
T Consensus 78 ~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---------------------------~~~~~~~LS~Ge~qrl~la 130 (202)
T cd03233 78 AEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK---------------------------GNEFVRGISGGERKRVSIA 130 (202)
T ss_pred hhhhcceEEEEecccccCCCCcHHHHHhhhhhhc---------------------------cccchhhCCHHHHHHHHHH
Confidence 4799999987654 69999997643110 2246679999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEec-Cchhhh-hcCCEEEEEeCCeEEEcc
Q 000720 733 RAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS-QKTVLYTT-HQLEFL-DAADLVLVMKDGKIEQSG 801 (1333)
Q Consensus 733 RAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~-~~TvIlvt-H~~~~l-~~aD~i~vl~~G~i~~~g 801 (1333)
||++++|+++||||||++||+.+++.+.+.+.+...+ +.|+|+++ |+.+.+ +.||++++|++|++++.|
T Consensus 131 ral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 131 EALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred HHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 9999999999999999999999988777644333333 56766655 555666 459999999999998754
No 317
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.3e-32 Score=290.33 Aligned_cols=157 Identities=40% Similarity=0.654 Sum_probs=139.5
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC----------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g---------- 659 (1333)
++++|+++.|+.. ....+++ ||++++||+++|+||||||||||+++|+|+.+|.+|++ .++|
T Consensus 1 l~~~~l~~~~~~~------~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i-~~~g~~~~~~~~~~ 73 (171)
T cd03228 1 IEFKNVSFSYPGR------PKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEI-LIDGVDLRDLDLES 73 (171)
T ss_pred CEEEEEEEEcCCC------CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEE-EECCEEhhhcCHHH
Confidence 4688999999643 2357999 99999999999999999999999999999999999986 5554
Q ss_pred ---eEEEEcCCCCCCCCCHHHHhccCCcCCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHHc
Q 000720 660 ---KKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVY 736 (1333)
Q Consensus 660 ---~iayv~Q~~~i~~~Tv~enI~~g~~~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~ 736 (1333)
.++|++|++.+++.|++||+ ||||||||++||||++
T Consensus 74 ~~~~i~~~~~~~~~~~~t~~e~l-----------------------------------------LS~G~~~rl~la~al~ 112 (171)
T cd03228 74 LRKNIAYVPQDPFLFSGTIRENI-----------------------------------------LSGGQRQRIAIARALL 112 (171)
T ss_pred HHhhEEEEcCCchhccchHHHHh-----------------------------------------hCHHHHHHHHHHHHHh
Confidence 37999999988888999997 9999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhcCCEEEEEeCCe
Q 000720 737 SNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGK 796 (1333)
Q Consensus 737 ~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~aD~i~vl~~G~ 796 (1333)
.+|+++||||||++||+...+++.+. ++...+++|+|++||+++.++.||++++|++|+
T Consensus 113 ~~p~llllDEP~~gLD~~~~~~l~~~-l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~ 171 (171)
T cd03228 113 RDPPILILDEATSALDPETEALILEA-LRALAKGKTVIVIAHRLSTIRDADRIIVLDDGR 171 (171)
T ss_pred cCCCEEEEECCCcCCCHHHHHHHHHH-HHHhcCCCEEEEEecCHHHHHhCCEEEEEcCCC
Confidence 99999999999999999998877654 444556799999999999987799999999985
No 318
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.5e-32 Score=295.56 Aligned_cols=174 Identities=24% Similarity=0.345 Sum_probs=145.6
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCC--cCCCCcEEEECC-------
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEI--PRISGAAIKVHG------- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~--~~~~G~~i~~~g------- 659 (1333)
.++++|+++.|+... ...+.+++ |+++++||+++|+||||||||||+++|+|.. +|++|++ .++|
T Consensus 3 ~l~~~~l~~~~~~~~----~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i-~~~g~~~~~~~ 77 (192)
T cd03232 3 VLTWKNLNYTVPVKG----GKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEI-LINGRPLDKNF 77 (192)
T ss_pred EEEEeeeEEEecCCC----CceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEE-EECCEehHHHh
Confidence 588999999997520 12468999 9999999999999999999999999999986 4789986 6654
Q ss_pred --eEEEEcCCCCCCC-CCHHHHhccCCcCCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHHc
Q 000720 660 --KKAYVPQSSWIQT-GTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVY 736 (1333)
Q Consensus 660 --~iayv~Q~~~i~~-~Tv~enI~~g~~~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~ 736 (1333)
.++|++|++.++. .|++||+.++.. .+ +||||||||++||||++
T Consensus 78 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~---------~~------------------------~LSgGe~qrv~la~al~ 124 (192)
T cd03232 78 QRSTGYVEQQDVHSPNLTVREALRFSAL---------LR------------------------GLSVEQRKRLTIGVELA 124 (192)
T ss_pred hhceEEecccCccccCCcHHHHHHHHHH---------Hh------------------------cCCHHHhHHHHHHHHHh
Confidence 4799999987655 699999975310 00 89999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhh-h-hcCCEEEEEeC-CeEEEcc
Q 000720 737 SNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEF-L-DAADLVLVMKD-GKIEQSG 801 (1333)
Q Consensus 737 ~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~-l-~~aD~i~vl~~-G~i~~~g 801 (1333)
.+|++++|||||++||+.+.+.+.+.+.+...+++|+|++||+++. + ..||++++|++ |++++.|
T Consensus 125 ~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 125 AKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred cCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 9999999999999999999888876544333457999999999984 4 56999999999 9998765
No 319
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.6e-32 Score=291.94 Aligned_cols=159 Identities=36% Similarity=0.451 Sum_probs=139.0
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC----------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g---------- 659 (1333)
|+++|++++|+. .+.+++ ||++++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 1 i~~~~l~~~~~~--------~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~g~~~~~~~~~~ 71 (178)
T cd03229 1 LELKNVSKRYGQ--------KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSI-LIDGEDLTDLEDEL 71 (178)
T ss_pred CEEEEEEEEECC--------eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE-EECCEEccccchhH
Confidence 468999999863 358999 99999999999999999999999999999999999986 4433
Q ss_pred -----eEEEEcCCCCCC-CCCHHHHhccCCcCCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHH
Q 000720 660 -----KKAYVPQSSWIQ-TGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLAR 733 (1333)
Q Consensus 660 -----~iayv~Q~~~i~-~~Tv~enI~~g~~~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LAR 733 (1333)
.++|++|+|.++ +.|++||+.+. ||||||||++|||
T Consensus 72 ~~~~~~i~~~~q~~~~~~~~t~~~~l~~~--------------------------------------lS~G~~qr~~la~ 113 (178)
T cd03229 72 PPLRRRIGMVFQDFALFPHLTVLENIALG--------------------------------------LSGGQQQRVALAR 113 (178)
T ss_pred HHHhhcEEEEecCCccCCCCCHHHheeec--------------------------------------CCHHHHHHHHHHH
Confidence 478999998765 46999998753 9999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEecCchhhhh-cCCEEEEEeCCe
Q 000720 734 AVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS-QKTVLYTTHQLEFLD-AADLVLVMKDGK 796 (1333)
Q Consensus 734 Al~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~-~~TvIlvtH~~~~l~-~aD~i~vl~~G~ 796 (1333)
|++++|++++|||||++||+.++..+.+.+.+...+ ++|+|++||++++++ .||++++|++|+
T Consensus 114 al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 114 ALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178 (178)
T ss_pred HHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence 999999999999999999999988887654443344 689999999999987 599999999985
No 320
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=6.9e-32 Score=321.62 Aligned_cols=203 Identities=20% Similarity=0.246 Sum_probs=163.3
Q ss_pred ccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECCeEEEEcCC
Q 000720 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQS 667 (1333)
Q Consensus 589 ~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g~iayv~Q~ 667 (1333)
..++++|.+|.++.. ...+.|++ ||++++|++++|+||||||||||+++|+|+++|++|++ .++|...++.+.
T Consensus 20 ~mL~lknL~~~~~~~-----~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI-~I~G~~~~i~~~ 93 (549)
T PRK13545 20 PFDKLKDLFFRSKDG-----EYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTV-DIKGSAALIAIS 93 (549)
T ss_pred ceeEEEEEEEecCCC-----ccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEE-EECCEeeeEEec
Confidence 358889998888754 33468999 99999999999999999999999999999999999996 888876666665
Q ss_pred CCC-CCCCHHHHhccCCc---CCHHH----HHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHHccCC
Q 000720 668 SWI-QTGTIRENILFGKD---MRQSF----YEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNS 739 (1333)
Q Consensus 668 ~~i-~~~Tv~enI~~g~~---~~~~~----~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~ 739 (1333)
+.+ ...|++||+.++.. .+... ..++++.+++.+ ....++.+||||||||++||||++.+|
T Consensus 94 ~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~-----------~ld~~~~~LSGGQrQRVaLArAL~~~P 162 (549)
T PRK13545 94 SGLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGK-----------FIYQPVKTYSSGMKSRLGFAISVHINP 162 (549)
T ss_pred cccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChh-----------HhhCCcccCCHHHHHHHHHHHHHHhCC
Confidence 544 45699999986432 22221 122333333322 234567899999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeCCeEEEccChHHHHh
Q 000720 740 DVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDLIA 808 (1333)
Q Consensus 740 ~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~~g~~~~l~~ 808 (1333)
+++||||||++||+.+.+.+++.+.+...+++|+|++||+++++.. ||++++|++|++++.|+++++..
T Consensus 163 ~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~~G~~~el~~ 232 (549)
T PRK13545 163 DILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVD 232 (549)
T ss_pred CEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999888776543333457899999999999865 99999999999999999998876
No 321
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=1.5e-32 Score=273.59 Aligned_cols=194 Identities=27% Similarity=0.358 Sum_probs=160.8
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC---------
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g--------- 659 (1333)
.|++++.+.+-.+.. .+-.+|++ ++.|++||.++||||+||||||||..++|+..|++|++ .+.|
T Consensus 6 ii~~~~l~ktvg~~~----~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV-~l~G~~L~~ldEd 80 (228)
T COG4181 6 IIEVHHLSKTVGQGE----GELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEV-RLLGQPLHKLDED 80 (228)
T ss_pred eeehhhhhhhhcCCC----cceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceE-EEcCcchhhcCHH
Confidence 467777766665441 34578999 99999999999999999999999999999999999997 5543
Q ss_pred --------eEEEEcCCCC-CCCCCHHHHhccCCcCCH-------HHHHHHHHHcccchHHHhhcCCCccccCCCCCCCCh
Q 000720 660 --------KKAYVPQSSW-IQTGTIRENILFGKDMRQ-------SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSG 723 (1333)
Q Consensus 660 --------~iayv~Q~~~-i~~~Tv~enI~~g~~~~~-------~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSG 723 (1333)
++|+|+|.-. +++.|..||+....+... ..-++.+++.+|.+ .+.-.+.+|||
T Consensus 81 ~rA~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~-----------Rl~HyP~qLSG 149 (228)
T COG4181 81 ARAALRARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGK-----------RLTHYPAQLSG 149 (228)
T ss_pred HHHHhhccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCccc-----------ccccCccccCc
Confidence 5899999965 689999999987654432 12334455555543 33456789999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCeEEEecCchhhhhcCCEEEEEeCCeEEE
Q 000720 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-LSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQ 799 (1333)
Q Consensus 724 GQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~-~~~~TvIlvtH~~~~l~~aD~i~vl~~G~i~~ 799 (1333)
|++|||+||||+...|+|++-||||.+||..+++++.+.++... .+|.|.|+||||......|||++-|.+|++++
T Consensus 150 GEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~Rc~R~~r~~~G~l~~ 226 (228)
T COG4181 150 GEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAARCDRQLRLRSGRLVE 226 (228)
T ss_pred hHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHhhhheeeeecceecc
Confidence 99999999999999999999999999999999999988776543 35889999999999999999999999999975
No 322
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=5.2e-32 Score=321.38 Aligned_cols=220 Identities=25% Similarity=0.363 Sum_probs=173.5
Q ss_pred CccEEEeeeEEEcCCccccc---CCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC----
Q 000720 588 DVAIDIEAGEYAWDAREENF---KKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---- 659 (1333)
Q Consensus 588 ~~~I~i~~~~fsw~~~~~~~---~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g---- 659 (1333)
+..++++|.+..|.....-+ ......++| ||++++||++||||++|||||||.++|+|+.+|++|.+ .++|
T Consensus 278 ~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i-~~~g~~~~ 356 (539)
T COG1123 278 EPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSI-IFDGQDLD 356 (539)
T ss_pred CceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE-EEeCcccc
Confidence 44678999999998642111 123456888 99999999999999999999999999999999988876 5544
Q ss_pred -----------eEEEEcCCCC--C-CCCCHHHHhccCCc----CC-H---HHHHHHHHHcccchHHHhhcCCCccccCCC
Q 000720 660 -----------KKAYVPQSSW--I-QTGTIRENILFGKD----MR-Q---SFYEEVLEGCALNQDIEMWADGDLSVVGER 717 (1333)
Q Consensus 660 -----------~iayv~Q~~~--i-~~~Tv~enI~~g~~----~~-~---~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~ 717 (1333)
++-+++|+|. + +..||+++|.-... .. . ++..+.++..+|..+ ..+++
T Consensus 357 ~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~----------~l~ry 426 (539)
T COG1123 357 LTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPE----------FLDRY 426 (539)
T ss_pred cccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHH----------HHhcC
Confidence 3568999985 3 56799999974322 11 1 223333555555432 34578
Q ss_pred CCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEecCchhhhhc-CCEEEEEeCC
Q 000720 718 GINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA-ADLVLVMKDG 795 (1333)
Q Consensus 718 g~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~-~~~TvIlvtH~~~~l~~-aD~i~vl~~G 795 (1333)
+.+|||||||||+|||||+.+|+++++|||+|+||+.++.++.+.+.+... -|-|.|+||||+.++++ ||||+||++|
T Consensus 427 P~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G 506 (539)
T COG1123 427 PHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDG 506 (539)
T ss_pred chhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECC
Confidence 999999999999999999999999999999999999999999875544333 37899999999999987 9999999999
Q ss_pred eEEEccChHHHHhhcchHHHHHH
Q 000720 796 KIEQSGKYEDLIADQNSELVRQM 818 (1333)
Q Consensus 796 ~i~~~g~~~~l~~~~~~~~~~~~ 818 (1333)
+|++.|+.+++.+.+..++.+.+
T Consensus 507 ~iVE~G~~~~v~~~p~h~Ytr~L 529 (539)
T COG1123 507 RIVEEGPTEKVFENPQHPYTRKL 529 (539)
T ss_pred eEEEeCCHHHHhcCCCChHHHHH
Confidence 99999999999886666665544
No 323
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=100.00 E-value=2.7e-32 Score=298.98 Aligned_cols=180 Identities=29% Similarity=0.366 Sum_probs=143.4
Q ss_pred EeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC------------
Q 000720 593 IEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG------------ 659 (1333)
Q Consensus 593 i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g------------ 659 (1333)
++|+++.|+. .+.+++ ||++++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 1 i~~l~~~~~~--------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~g~~~~~~~~~~~~ 71 (206)
T TIGR03608 1 LKNISKKFGD--------KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQV-YLNGKETPPLNSKKAS 71 (206)
T ss_pred CcceEEEECC--------EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEE-EECCEEccccchhhHH
Confidence 4678888853 358999 99999999999999999999999999999999999986 4432
Q ss_pred -----eEEEEcCCCCCCC-CCHHHHhccCCcC---CH----HHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHH
Q 000720 660 -----KKAYVPQSSWIQT-GTIRENILFGKDM---RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQK 726 (1333)
Q Consensus 660 -----~iayv~Q~~~i~~-~Tv~enI~~g~~~---~~----~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQk 726 (1333)
.++|++|++.++. .|++||+.++... .. ++.++.++..++. ...++...+||||||
T Consensus 72 ~~~~~~i~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~lS~G~~ 140 (206)
T TIGR03608 72 KFRREKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLN-----------LKLKQKIYELSGGEQ 140 (206)
T ss_pred HHHHhCeeEEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCch-----------hhhcCChhhCCHHHH
Confidence 4799999988765 7999999875321 11 1222333333332 123456789999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhcCCEEEEE
Q 000720 727 QRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVM 792 (1333)
Q Consensus 727 qRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~aD~i~vl 792 (1333)
||++||||++++|+++||||||++||+.+.+.+.+.+.+...+++|+|++||+++.+..||++++|
T Consensus 141 qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~i~~l 206 (206)
T TIGR03608 141 QRVALARAILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAKQADRVIEL 206 (206)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEeC
Confidence 999999999999999999999999999998877765433333589999999999988789999875
No 324
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.5e-32 Score=342.06 Aligned_cols=215 Identities=20% Similarity=0.270 Sum_probs=167.2
Q ss_pred ccEEEeeeEEEcCCccccc---CCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC-----
Q 000720 589 VAIDIEAGEYAWDAREENF---KKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG----- 659 (1333)
Q Consensus 589 ~~I~i~~~~fsw~~~~~~~---~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g----- 659 (1333)
..++++|++++|+.+...+ ......+++ ||+|++||+++|+|+||||||||+++|+|+++|++|++ .++|
T Consensus 312 ~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I-~~~g~~i~~ 390 (623)
T PRK10261 312 PILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEI-IFNGQRIDT 390 (623)
T ss_pred ceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEE-EECCEECCc
Confidence 3599999999996320000 011357899 99999999999999999999999999999999999986 5544
Q ss_pred -----------eEEEEcCCCC--C-CCCCHHHHhccCCc---C-CH----HHHHHHHHHcccchHHHhhcCCCccccCCC
Q 000720 660 -----------KKAYVPQSSW--I-QTGTIRENILFGKD---M-RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGER 717 (1333)
Q Consensus 660 -----------~iayv~Q~~~--i-~~~Tv~enI~~g~~---~-~~----~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~ 717 (1333)
+++|++|+|. + +..||.||+.++.. . .. ++..+.++.+++.. ......
T Consensus 391 ~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~----------~~~~~~ 460 (623)
T PRK10261 391 LSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLP----------EHAWRY 460 (623)
T ss_pred CCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCH----------HHhhCC
Confidence 4799999983 4 45799999976421 1 11 12233444444421 123467
Q ss_pred CCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEecCchhhhhc-CCEEEEEeCC
Q 000720 718 GINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS-QKTVLYTTHQLEFLDA-ADLVLVMKDG 795 (1333)
Q Consensus 718 g~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~-~~TvIlvtH~~~~l~~-aD~i~vl~~G 795 (1333)
+.+|||||||||+|||||+.+|+++||||||++||+.++.++.+.+.+...+ +.|+|+||||++.+.. ||+|++|++|
T Consensus 461 ~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G 540 (623)
T PRK10261 461 PHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLG 540 (623)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 7899999999999999999999999999999999999998888654443333 7899999999999865 9999999999
Q ss_pred eEEEccChHHHHhhcchHH
Q 000720 796 KIEQSGKYEDLIADQNSEL 814 (1333)
Q Consensus 796 ~i~~~g~~~~l~~~~~~~~ 814 (1333)
+|++.|+.+++..++...+
T Consensus 541 ~iv~~g~~~~i~~~p~~~~ 559 (623)
T PRK10261 541 QIVEIGPRRAVFENPQHPY 559 (623)
T ss_pred EEEEecCHHHHhcCCCCHH
Confidence 9999999999876443333
No 325
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.98 E-value=1.8e-32 Score=291.75 Aligned_cols=205 Identities=22% Similarity=0.335 Sum_probs=161.1
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECCe---------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK--------- 660 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g~--------- 660 (1333)
.+.++.+.+|.. -..++| ||++++||+++++|||||||||++++|.|.++|++|++ .++|+
T Consensus 5 L~v~~l~k~FGG--------l~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v-~~~G~~it~l~p~~ 75 (250)
T COG0411 5 LEVRGLSKRFGG--------LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTV-IFRGRDITGLPPHR 75 (250)
T ss_pred eeeccceeecCC--------EEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceE-EECCcccCCCCHHH
Confidence 456777777753 356888 99999999999999999999999999999999999997 66663
Q ss_pred -----EEEEcCCCCCC-CCCHHHHhccCCcCC--------HH----HHHHHHHHcccchHHHhhc-CCCccccCCCCCCC
Q 000720 661 -----KAYVPQSSWIQ-TGTIRENILFGKDMR--------QS----FYEEVLEGCALNQDIEMWA-DGDLSVVGERGINL 721 (1333)
Q Consensus 661 -----iayv~Q~~~i~-~~Tv~enI~~g~~~~--------~~----~~~~v~~~~~l~~d~~~~~-~g~~t~ig~~g~~L 721 (1333)
++--+|.+-+| +.||.||++.+.... .. ..++..+. -.+.+. .|.....++...+|
T Consensus 76 iar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~-----A~~~Le~vgL~~~a~~~A~~L 150 (250)
T COG0411 76 IARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARER-----ARELLEFVGLGELADRPAGNL 150 (250)
T ss_pred HHhccceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHH-----HHHHHHHcCCchhhcchhhcC
Confidence 57889999865 569999999863211 00 01111111 001111 12333445778899
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh--CCCeEEEecCchhhhh-cCCEEEEEeCCeEE
Q 000720 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLD-AADLVLVMKDGKIE 798 (1333)
Q Consensus 722 SGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~--~~~TvIlvtH~~~~l~-~aD~i~vl~~G~i~ 798 (1333)
|+|||+|+.|||||+.+|+++|||||.+||.+....++.+. ++.+. .+.|+++|.|||+.+. .||||+||+.|+++
T Consensus 151 syG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~-i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~I 229 (250)
T COG0411 151 SYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAEL-IRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVI 229 (250)
T ss_pred ChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHH-HHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCc
Confidence 99999999999999999999999999999999998888764 44444 3589999999999975 59999999999999
Q ss_pred EccChHHHHhhc
Q 000720 799 QSGKYEDLIADQ 810 (1333)
Q Consensus 799 ~~g~~~~l~~~~ 810 (1333)
.+|+|+|+.+++
T Consensus 230 AeG~P~eV~~dp 241 (250)
T COG0411 230 AEGTPEEVRNNP 241 (250)
T ss_pred ccCCHHHHhcCH
Confidence 999999998743
No 326
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.98 E-value=5.1e-32 Score=290.68 Aligned_cols=159 Identities=28% Similarity=0.462 Sum_probs=137.3
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC---------
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g--------- 659 (1333)
.++++|++++| .+++ |+++++||+++|+||||||||||+++|+|+.+|++|++ .++|
T Consensus 4 ~l~~~~l~~~~------------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~g~~~~~~~~~ 70 (182)
T cd03215 4 VLEVRGLSVKG------------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEI-TLDGKPVTRRSPR 70 (182)
T ss_pred EEEEeccEEEe------------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceE-EECCEECCccCHH
Confidence 48888988865 5788 99999999999999999999999999999999999986 5544
Q ss_pred -----eEEEEcCCC----CCCCCCHHHHhccCCcCCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHH
Q 000720 660 -----KKAYVPQSS----WIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQ 730 (1333)
Q Consensus 660 -----~iayv~Q~~----~i~~~Tv~enI~~g~~~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~ 730 (1333)
+++|++|++ ..++.|++||+.++.. ||||||||++
T Consensus 71 ~~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~~~------------------------------------LS~G~~qrl~ 114 (182)
T cd03215 71 DAIRAGIAYVPEDRKREGLVLDLSVAENIALSSL------------------------------------LSGGNQQKVV 114 (182)
T ss_pred HHHhCCeEEecCCcccCcccCCCcHHHHHHHHhh------------------------------------cCHHHHHHHH
Confidence 479999985 3456799999976421 9999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeCCeE
Q 000720 731 LARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKI 797 (1333)
Q Consensus 731 LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i 797 (1333)
||||++.+|+++||||||++||+++.+.+.+.+.+...+++|+|++||+++.+.. ||++++|++|++
T Consensus 115 la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 115 LARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILVMYEGRI 182 (182)
T ss_pred HHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence 9999999999999999999999999888776443333457999999999998866 999999999974
No 327
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.98 E-value=1.5e-31 Score=302.37 Aligned_cols=197 Identities=23% Similarity=0.267 Sum_probs=154.9
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCC--CcCCCCcEEEECC-------
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGE--IPRISGAAIKVHG------- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~--~~~~~G~~i~~~g------- 659 (1333)
.++++|+++.|+. .+.+++ ||++++||+++|+|+||||||||+++|+|+ ++|++|++ .++|
T Consensus 7 ~l~~~~l~~~~~~--------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i-~~~g~~~~~~~ 77 (252)
T CHL00131 7 ILEIKNLHASVNE--------NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDI-LFKGESILDLE 77 (252)
T ss_pred eEEEEeEEEEeCC--------EEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceE-EECCEEcccCC
Confidence 5999999999963 258999 999999999999999999999999999998 57899986 5543
Q ss_pred -------eEEEEcCCCCCCC-CCHHHHhccCCcC----------CH----HHHHHHHHHcccchHHHhhcCCCccccCCC
Q 000720 660 -------KKAYVPQSSWIQT-GTIRENILFGKDM----------RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGER 717 (1333)
Q Consensus 660 -------~iayv~Q~~~i~~-~Tv~enI~~g~~~----------~~----~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~ 717 (1333)
.++|++|++.++. .|+++|+.++... +. ++..+.++.+++. .+..++.
T Consensus 78 ~~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~----------~~~~~~~ 147 (252)
T CHL00131 78 PEERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMD----------PSFLSRN 147 (252)
T ss_pred hhhhheeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCc----------hhhhccc
Confidence 2679999987665 5899998764211 00 1112223322221 1123455
Q ss_pred CC-CCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc--CCEEEEEeC
Q 000720 718 GI-NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA--ADLVLVMKD 794 (1333)
Q Consensus 718 g~-~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~--aD~i~vl~~ 794 (1333)
.. +||||||||++||||++++|+++||||||++||+.+.+.+.+.+.+...+++|+|++||+++++.. ||++++|++
T Consensus 148 ~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~ 227 (252)
T CHL00131 148 VNEGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQN 227 (252)
T ss_pred cccCCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeC
Confidence 55 599999999999999999999999999999999999888876443333458999999999999864 899999999
Q ss_pred CeEEEccChHH
Q 000720 795 GKIEQSGKYED 805 (1333)
Q Consensus 795 G~i~~~g~~~~ 805 (1333)
|++++.|+++.
T Consensus 228 G~i~~~~~~~~ 238 (252)
T CHL00131 228 GKIIKTGDAEL 238 (252)
T ss_pred CEEEEecChhh
Confidence 99999998873
No 328
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.98 E-value=7.2e-32 Score=301.65 Aligned_cols=179 Identities=23% Similarity=0.306 Sum_probs=141.7
Q ss_pred cccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC------------eEEEEc-CCCCC-CCCCH
Q 000720 611 TIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG------------KKAYVP-QSSWI-QTGTI 675 (1333)
Q Consensus 611 ~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g------------~iayv~-Q~~~i-~~~Tv 675 (1333)
.+.|++ ||++++||+++|+||||||||||+++|+|+++|++|++ .++| +++|++ |++.+ +..|+
T Consensus 34 ~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i-~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~tv 112 (236)
T cd03267 34 VEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEV-RVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPV 112 (236)
T ss_pred eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEE-EECCEEccccchhhcccEEEEcCCccccCCCCcH
Confidence 468999 99999999999999999999999999999999999986 5544 478997 55555 46799
Q ss_pred HHHhccCCc---CCHHH----HHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCC
Q 000720 676 RENILFGKD---MRQSF----YEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPF 748 (1333)
Q Consensus 676 ~enI~~g~~---~~~~~----~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDEP~ 748 (1333)
+||+.+... ..... .++.++.+++. .....+..+||||||||++||||++.+|+++||||||
T Consensus 113 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~-----------~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt 181 (236)
T cd03267 113 IDSFYLLAAIYDLPPARFKKRLDELSELLDLE-----------ELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPT 181 (236)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh-----------hHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 999976432 11211 12222222221 1233567899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHh-CCCeEEEecCchhhhhc-CCEEEEEeCCeEEEcc
Q 000720 749 SAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSG 801 (1333)
Q Consensus 749 saLD~~~~~~l~~~~~~~~~-~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~~g 801 (1333)
++||+.+.+.+.+.+.+... +++|+|++||+++++.. ||++++|++|++++.|
T Consensus 182 ~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 182 IGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEecC
Confidence 99999998888765443333 37899999999999865 9999999999998754
No 329
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.98 E-value=7.3e-32 Score=299.08 Aligned_cols=179 Identities=26% Similarity=0.334 Sum_probs=141.4
Q ss_pred cccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECCeEEEEcC-CCCC-CCCCHHHHhccCCcC--
Q 000720 611 TIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQ-SSWI-QTGTIRENILFGKDM-- 685 (1333)
Q Consensus 611 ~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g~iayv~Q-~~~i-~~~Tv~enI~~g~~~-- 685 (1333)
.+.+++ ||++++||+++|+||||||||||+++|+|+++|++|++ .++|+..+..+ ...+ ++.|++||+.++...
T Consensus 35 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i-~~~g~~~~~~~~~~~~~~~~tv~enl~~~~~~~~ 113 (224)
T cd03220 35 FWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTV-TVRGRVSSLLGLGGGFNPELTGRENIYLNGRLLG 113 (224)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE-EECCEEchhhcccccCCCCCcHHHHHHHHHHHcC
Confidence 468999 99999999999999999999999999999999999996 88887655443 2333 467999999875321
Q ss_pred -CHHH----HHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHH
Q 000720 686 -RQSF----YEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLF 760 (1333)
Q Consensus 686 -~~~~----~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~ 760 (1333)
+... ..++++..++ ....++...+||||||||++||||++++|+++||||||++||+.+++.+.
T Consensus 114 ~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~~~~~~ 182 (224)
T cd03220 114 LSRKEIDEKIDEIIEFSEL-----------GDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQ 182 (224)
T ss_pred CCHHHHHHHHHHHHHHcCC-----------hhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH
Confidence 1111 1222222222 12234567899999999999999999999999999999999999988887
Q ss_pred HHHHHHHhCCCeEEEecCchhhhh-cCCEEEEEeCCeEEEcc
Q 000720 761 KQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSG 801 (1333)
Q Consensus 761 ~~~~~~~~~~~TvIlvtH~~~~l~-~aD~i~vl~~G~i~~~g 801 (1333)
+.+.+...+++|+|++||+++.+. .||++++|++|++++.|
T Consensus 183 ~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 183 RRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred HHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 754443345789999999999886 49999999999998765
No 330
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.98 E-value=1.5e-31 Score=291.44 Aligned_cols=171 Identities=26% Similarity=0.298 Sum_probs=143.3
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCC--CcCCCCcEEEECC--------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGE--IPRISGAAIKVHG-------- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~--~~~~~G~~i~~~g-------- 659 (1333)
++++|++++|+. .+.+++ ||++++||+++|+|+||||||||+++|+|+ .+|++|++ .++|
T Consensus 1 l~~~~l~~~~~~--------~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i-~~~g~~~~~~~~ 71 (200)
T cd03217 1 LEIKDLHVSVGG--------KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEI-LFKGEDITDLPP 71 (200)
T ss_pred CeEEEEEEEeCC--------EEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEE-EECCEECCcCCH
Confidence 468899999963 358999 999999999999999999999999999999 47899986 5544
Q ss_pred ------eEEEEcCCCCCCC-CCHHHHhccCCcCCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHH
Q 000720 660 ------KKAYVPQSSWIQT-GTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLA 732 (1333)
Q Consensus 660 ------~iayv~Q~~~i~~-~Tv~enI~~g~~~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LA 732 (1333)
.++|++|++.+++ .|+++|+ . ....+||||||||++||
T Consensus 72 ~~~~~~~i~~v~q~~~~~~~~~~~~~l------------------------~-----------~~~~~LS~G~~qrv~la 116 (200)
T cd03217 72 EERARLGIFLAFQYPPEIPGVKNADFL------------------------R-----------YVNEGFSGGEKKRNEIL 116 (200)
T ss_pred HHHhhCcEEEeecChhhccCccHHHHH------------------------h-----------hccccCCHHHHHHHHHH
Confidence 2899999987665 4666655 0 11247999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhh--cCCEEEEEeCCeEEEccChHHH
Q 000720 733 RAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD--AADLVLVMKDGKIEQSGKYEDL 806 (1333)
Q Consensus 733 RAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~--~aD~i~vl~~G~i~~~g~~~~l 806 (1333)
||++.+|++++|||||++||+.+.+.+.+.+.+...+++|+|++||+++.+. .||++++|++|++.+.|+ .++
T Consensus 117 ral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~~~-~~~ 191 (200)
T cd03217 117 QLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSGD-KEL 191 (200)
T ss_pred HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhhCCEEEEEECCEEEEEcc-HHH
Confidence 9999999999999999999999988877654443345789999999999987 699999999999999884 444
No 331
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.98 E-value=1.3e-31 Score=300.27 Aligned_cols=183 Identities=20% Similarity=0.306 Sum_probs=143.2
Q ss_pred cccC-CeEe-----eCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC-eEEEEcCCCC-CCCCCHHHHhccCCc
Q 000720 613 KLTD-KMKI-----MKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-KKAYVPQSSW-IQTGTIRENILFGKD 684 (1333)
Q Consensus 613 ~L~~-nl~i-----~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g-~iayv~Q~~~-i~~~Tv~enI~~g~~ 684 (1333)
.+.+ +|++ ++||+++|+||||||||||+++|+|+++|++|++ .++| +++|++|++. .++.|++||+.+...
T Consensus 9 ~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i-~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~~ 87 (246)
T cd03237 9 TLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDI-EIELDTVSYKPQYIKADYEGTVRDLLSSITK 87 (246)
T ss_pred ccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeE-EECCceEEEecccccCCCCCCHHHHHHHHhh
Confidence 4555 5555 4799999999999999999999999999999996 7887 8999999986 467899999975422
Q ss_pred C---CHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHH
Q 000720 685 M---RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFK 761 (1333)
Q Consensus 685 ~---~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~ 761 (1333)
. ...+.+++++.+++.. ..+.++.+||||||||++|||||+.+|++|||||||++||+.++..+.+
T Consensus 88 ~~~~~~~~~~~~l~~l~l~~-----------~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~ 156 (246)
T cd03237 88 DFYTHPYFKTEIAKPLQIEQ-----------ILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASK 156 (246)
T ss_pred hccccHHHHHHHHHHcCCHH-----------HhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH
Confidence 1 1222344455444432 2345678999999999999999999999999999999999999887766
Q ss_pred HHHHHHh-CCCeEEEecCchhhhhc-CCEEEEEeCCeEE--EccChHHHH
Q 000720 762 QCLMGLL-SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIE--QSGKYEDLI 807 (1333)
Q Consensus 762 ~~~~~~~-~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~--~~g~~~~l~ 807 (1333)
.+.+... .++|+|+|||+++.+.. ||+|++|+++..+ ..++++++.
T Consensus 157 ~l~~~~~~~~~tiiivsHd~~~~~~~~d~i~~l~~~~~~~~~~~~~~~~~ 206 (246)
T cd03237 157 VIRRFAENNEKTAFVVEHDIIMIDYLADRLIVFEGEPSVNGVANPPQSLR 206 (246)
T ss_pred HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCCCeeEEEeCCchHHH
Confidence 4433333 37999999999999875 9999999765443 455666554
No 332
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.98 E-value=1.1e-31 Score=297.52 Aligned_cols=178 Identities=29% Similarity=0.455 Sum_probs=143.8
Q ss_pred eEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC--------eEEEEcCCCCC---CCCCHHHHhccCCc--
Q 000720 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------KKAYVPQSSWI---QTGTIRENILFGKD-- 684 (1333)
Q Consensus 618 l~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g--------~iayv~Q~~~i---~~~Tv~enI~~g~~-- 684 (1333)
|++++||+++|+|+||||||||+++|+|..+|++|++ .++| +++|++|++.+ ++.|++||+.++..
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~ 79 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTV-KVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGH 79 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceE-EECCccchHhhCcEEEecccccccCCCCccHHHHHHhccccc
Confidence 4689999999999999999999999999999999986 7766 38999999854 35799999987531
Q ss_pred ---C--C-HH---HHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHH
Q 000720 685 ---M--R-QS---FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHT 755 (1333)
Q Consensus 685 ---~--~-~~---~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~ 755 (1333)
. . .. +..+.++.+++. ...+..+.+||||||||++||||++++|+++||||||++||+.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~ 148 (223)
T TIGR03771 80 IGWLRRPCVADFAAVRDALRRVGLT-----------ELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPT 148 (223)
T ss_pred cccccCCcHHHHHHHHHHHHHhCCc-----------hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence 0 1 11 122223333322 22345678899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCeEEEecCchhhhh-cCCEEEEEeCCeEEEccChHHHHh
Q 000720 756 GTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKYEDLIA 808 (1333)
Q Consensus 756 ~~~l~~~~~~~~~~~~TvIlvtH~~~~l~-~aD~i~vl~~G~i~~~g~~~~l~~ 808 (1333)
.+.+.+.+.+...+++|+|++||+++.+. .||+++++ +|++++.|+++++.+
T Consensus 149 ~~~l~~~l~~~~~~~~tvii~sH~~~~~~~~~d~i~~l-~G~i~~~~~~~~~~~ 201 (223)
T TIGR03771 149 QELLTELFIELAGAGTAILMTTHDLAQAMATCDRVVLL-NGRVIADGTPQQLQD 201 (223)
T ss_pred HHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHHhcC
Confidence 88887755443345889999999999876 49999999 899999999988865
No 333
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.98 E-value=2e-31 Score=300.16 Aligned_cols=183 Identities=26% Similarity=0.411 Sum_probs=147.3
Q ss_pred cccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC-------------eEEEEcCCCC-CCCCCHHH
Q 000720 613 KLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------------KKAYVPQSSW-IQTGTIRE 677 (1333)
Q Consensus 613 ~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g-------------~iayv~Q~~~-i~~~Tv~e 677 (1333)
.|++ ||++++||+++|+||||||||||+++|+|..++ +|++ .++| .++|++|++. .+..|++|
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~-~G~i-~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~~ 88 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG-SGSI-QFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVFQ 88 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC-CeEE-EECCEecCcCCHHHHhhheEEecccCccCCCccHHH
Confidence 5888 999999999999999999999999999999864 8876 6654 2799999974 56789999
Q ss_pred HhccCCcC--CH----HHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHHcc-------CCCEEEE
Q 000720 678 NILFGKDM--RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYS-------NSDVYIF 744 (1333)
Q Consensus 678 nI~~g~~~--~~----~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~-------~~~illL 744 (1333)
|+.++... +. ++.++.++..++. ...+..+.+||||||||++||||+++ +|+++||
T Consensus 89 nl~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llll 157 (248)
T PRK03695 89 YLTLHQPDKTRTEAVASALNEVAEALGLD-----------DKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLL 157 (248)
T ss_pred HHHhcCccCCCcHHHHHHHHHHHHHcCCH-----------hHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEE
Confidence 99986432 11 1223344433332 12345778999999999999999998 6799999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhh-cCCEEEEEeCCeEEEccChHHHHh
Q 000720 745 DDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKYEDLIA 808 (1333)
Q Consensus 745 DEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~-~aD~i~vl~~G~i~~~g~~~~l~~ 808 (1333)
||||++||+...+.+.+.+.+...+++|+|++||+++.+. .||++++|++|++++.|+.+++..
T Consensus 158 DEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 222 (248)
T PRK03695 158 DEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLT 222 (248)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhC
Confidence 9999999999988777644333345799999999999875 599999999999999999888754
No 334
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.98 E-value=2e-31 Score=293.68 Aligned_cols=186 Identities=22% Similarity=0.265 Sum_probs=149.0
Q ss_pred ccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC--------
Q 000720 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------- 659 (1333)
Q Consensus 589 ~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g-------- 659 (1333)
..++++|++++|+.. +.+++ ||++++||+++|+|+||||||||+++|+|+++|++|++ .++|
T Consensus 10 ~~l~~~~l~~~~~~~--------~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i-~~~g~~i~~~~~ 80 (214)
T PRK13543 10 PLLAAHALAFSRNEE--------PVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQI-QIDGKTATRGDR 80 (214)
T ss_pred ceEEEeeEEEecCCc--------eeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeE-EECCEEccchhh
Confidence 469999999999642 57999 99999999999999999999999999999999999986 6665
Q ss_pred --eEEEEcCCCCCCC-CCHHHHhccCCcCC----HHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHH
Q 000720 660 --KKAYVPQSSWIQT-GTIRENILFGKDMR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLA 732 (1333)
Q Consensus 660 --~iayv~Q~~~i~~-~Tv~enI~~g~~~~----~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LA 732 (1333)
.++|++|++.++. .|++||+.++...+ +++.++.++..++. ...+.+..+||||||||++||
T Consensus 81 ~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G~~qrv~la 149 (214)
T PRK13543 81 SRFMAYLGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLA-----------GYEDTLVRQLSAGQKKRLALA 149 (214)
T ss_pred hhceEEeecCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCCh-----------hhccCChhhCCHHHHHHHHHH
Confidence 3899999987665 49999997643221 11222223322221 123467789999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeC
Q 000720 733 RAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKD 794 (1333)
Q Consensus 733 RAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~ 794 (1333)
||++++|++++|||||++||+...+.+.+.+.+...+++|+|++||+++.+.. ||++++++.
T Consensus 150 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 150 RLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRTRMLTLEA 212 (214)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcceEEEEee
Confidence 99999999999999999999999887766443344567999999999999865 999999864
No 335
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.98 E-value=2.3e-31 Score=295.58 Aligned_cols=215 Identities=23% Similarity=0.346 Sum_probs=163.5
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcC-----CCCcEEEECC-----
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR-----ISGAAIKVHG----- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~-----~~G~~i~~~g----- 659 (1333)
++++|.+.++.... .....++| ||++++||++||+|++||||||+.++|+|++++ .+|++ .++|
T Consensus 2 L~v~nL~v~f~~~~----g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i-~f~g~~l~~ 76 (316)
T COG0444 2 LEVKNLSVSFPTDA----GVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEI-LFDGKDLLS 76 (316)
T ss_pred ceEeeeEEEEecCC----ccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEE-EECCccccc
Confidence 46888888886541 23467889 999999999999999999999999999999983 34554 4443
Q ss_pred ------------eEEEEcCCCC--C-CCCCHHHHhc----cCCcC--CH---HHHHHHHHHcccchHHHhhcCCCccccC
Q 000720 660 ------------KKAYVPQSSW--I-QTGTIRENIL----FGKDM--RQ---SFYEEVLEGCALNQDIEMWADGDLSVVG 715 (1333)
Q Consensus 660 ------------~iayv~Q~~~--i-~~~Tv~enI~----~g~~~--~~---~~~~~v~~~~~l~~d~~~~~~g~~t~ig 715 (1333)
+|+|++|+|- + +-.||.+-+. ..... .+ ++-.+.++..++.+. ...+.
T Consensus 77 l~~~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~--------~~~~~ 148 (316)
T COG0444 77 LSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDP--------ERRLK 148 (316)
T ss_pred CCHHHHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCH--------HHHHh
Confidence 5799999984 2 3347765553 21111 11 122233333333321 12345
Q ss_pred CCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEecCchhhhhc-CCEEEEEe
Q 000720 716 ERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA-ADLVLVMK 793 (1333)
Q Consensus 716 ~~g~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~-~~~TvIlvtH~~~~l~~-aD~i~vl~ 793 (1333)
..+.+|||||||||.||.|+..+|+++|.||||+|||..++.++.+.+.+... .|.|+|+||||+..+.. ||+|+||.
T Consensus 149 ~YPhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMY 228 (316)
T COG0444 149 SYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMY 228 (316)
T ss_pred hCCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEE
Confidence 67899999999999999999999999999999999999999999875433322 57899999999998754 99999999
Q ss_pred CCeEEEccChHHHHhhcchHHHHHH
Q 000720 794 DGKIEQSGKYEDLIADQNSELVRQM 818 (1333)
Q Consensus 794 ~G~i~~~g~~~~l~~~~~~~~~~~~ 818 (1333)
.|+|+|.|+.++++.++...+.+.+
T Consensus 229 aG~iVE~g~~~~i~~~P~HPYT~~L 253 (316)
T COG0444 229 AGRIVEEGPVEEIFKNPKHPYTRGL 253 (316)
T ss_pred CcEEEEeCCHHHHhcCCCChHHHHH
Confidence 9999999999999987766666544
No 336
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.97 E-value=6.1e-32 Score=270.72 Aligned_cols=204 Identities=26% Similarity=0.348 Sum_probs=162.7
Q ss_pred ccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECCe-------
Q 000720 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK------- 660 (1333)
Q Consensus 589 ~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g~------- 660 (1333)
.+++++|....|... .+||+ +++.++|+.+.|+|.+||||||+|+||.=+..|..|.+ .++|.
T Consensus 5 ~~l~v~dlHK~~G~~--------eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I-~v~geei~~k~~ 75 (256)
T COG4598 5 NALEVEDLHKRYGEH--------EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSI-RVNGEEIRLKRD 75 (256)
T ss_pred cceehhHHHhhcccc--------hhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceE-EECCeEEEeeeC
Confidence 467788887777543 58999 99999999999999999999999999999999999986 66542
Q ss_pred -------------------EEEEcCCCCCC-CCCHHHHhccC------CcCCH--HHHHHHHHHcccchHHHhhcCCCcc
Q 000720 661 -------------------KAYVPQSSWIQ-TGTIRENILFG------KDMRQ--SFYEEVLEGCALNQDIEMWADGDLS 712 (1333)
Q Consensus 661 -------------------iayv~Q~~~i~-~~Tv~enI~~g------~~~~~--~~~~~v~~~~~l~~d~~~~~~g~~t 712 (1333)
.++|+|+-.+. .+||.||+.-. .+-++ ++-+..+...++. .
T Consensus 76 ~~G~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~-----------e 144 (256)
T COG4598 76 KDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIA-----------E 144 (256)
T ss_pred CCCCeeeCCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCch-----------h
Confidence 38999987654 47999999743 22111 1222223333332 2
Q ss_pred ccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEE
Q 000720 713 VVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLV 791 (1333)
Q Consensus 713 ~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~v 791 (1333)
..+..+..|||||+||++|||||+.+|+++|+|||||||||+---++.+-+-....+|+|.++|||.+.|... +.+|+.
T Consensus 145 k~~~YP~~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~f 224 (256)
T COG4598 145 KADAYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIF 224 (256)
T ss_pred hhhcCccccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEE
Confidence 2335788999999999999999999999999999999999998777776443445579999999999999977 899999
Q ss_pred EeCCeEEEccChHHHHhhcch
Q 000720 792 MKDGKIEQSGKYEDLIADQNS 812 (1333)
Q Consensus 792 l~~G~i~~~g~~~~l~~~~~~ 812 (1333)
+++|.|.++|+|+++..++..
T Consensus 225 Lh~G~iEE~G~P~qvf~nP~S 245 (256)
T COG4598 225 LHQGKIEEEGPPEQVFGNPQS 245 (256)
T ss_pred eecceecccCChHHHhcCCCC
Confidence 999999999999999875443
No 337
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.97 E-value=1.8e-31 Score=332.70 Aligned_cols=207 Identities=23% Similarity=0.325 Sum_probs=160.9
Q ss_pred cEEEeeeEEEcCCcccc---cCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC------
Q 000720 590 AIDIEAGEYAWDAREEN---FKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG------ 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~---~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g------ 659 (1333)
.++++|++++|+..... .....+.+++ ||++++||+++|+||||||||||+++|+|+++ .+|++ .++|
T Consensus 275 ~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~i-~~~g~~i~~~ 352 (529)
T PRK15134 275 LLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGEI-WFDGQPLHNL 352 (529)
T ss_pred cccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-CCcEE-EECCEEcccc
Confidence 58999999999631000 0012468999 99999999999999999999999999999985 88986 5544
Q ss_pred ----------eEEEEcCCC--CC-CCCCHHHHhccCCc-----CCH----HHHHHHHHHcccchHHHhhcCCCccccCCC
Q 000720 660 ----------KKAYVPQSS--WI-QTGTIRENILFGKD-----MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGER 717 (1333)
Q Consensus 660 ----------~iayv~Q~~--~i-~~~Tv~enI~~g~~-----~~~----~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~ 717 (1333)
+++|++|++ .+ .+.|++||+.++.. .+. ++.++.++..++.. .....+
T Consensus 353 ~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~ 422 (529)
T PRK15134 353 NRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDP----------ETRHRY 422 (529)
T ss_pred chhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCH----------HHHhcC
Confidence 379999997 24 45799999987521 111 11222333333321 123467
Q ss_pred CCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEecCchhhhh-cCCEEEEEeCC
Q 000720 718 GINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS-QKTVLYTTHQLEFLD-AADLVLVMKDG 795 (1333)
Q Consensus 718 g~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~-~~TvIlvtH~~~~l~-~aD~i~vl~~G 795 (1333)
+.+|||||||||+||||++.+|+++||||||++||+.+.+.+++.+.+...+ ++|||+||||++++. .||+|++|++|
T Consensus 423 ~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G 502 (529)
T PRK15134 423 PAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQG 502 (529)
T ss_pred CccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEECC
Confidence 7899999999999999999999999999999999999988887754443333 789999999999876 49999999999
Q ss_pred eEEEccChHHHHh
Q 000720 796 KIEQSGKYEDLIA 808 (1333)
Q Consensus 796 ~i~~~g~~~~l~~ 808 (1333)
++++.|+.+++.+
T Consensus 503 ~i~~~~~~~~~~~ 515 (529)
T PRK15134 503 EVVEQGDCERVFA 515 (529)
T ss_pred EEEEEcCHHHHhc
Confidence 9999999998875
No 338
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=1.9e-32 Score=279.10 Aligned_cols=198 Identities=26% Similarity=0.408 Sum_probs=164.4
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECCe---------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK--------- 660 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g~--------- 660 (1333)
|+++|++.+|.. +.++.+ |++|++|.+++++||||+||||||+++.+++++++|++ .++|.
T Consensus 2 I~i~nv~K~y~~--------~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i-~i~g~~~~~~~s~~ 72 (252)
T COG4604 2 ITIENVSKSYGT--------KVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEI-TIDGLELTSTPSKE 72 (252)
T ss_pred eeehhhhHhhCC--------EEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceE-EEeeeecccCChHH
Confidence 678888888864 478999 99999999999999999999999999999999999996 78774
Q ss_pred ----EEEEcCCCCCC-CCCHHHHhccCC-cCCH--------HHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHH
Q 000720 661 ----KAYVPQSSWIQ-TGTIRENILFGK-DMRQ--------SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQK 726 (1333)
Q Consensus 661 ----iayv~Q~~~i~-~~Tv~enI~~g~-~~~~--------~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQk 726 (1333)
++..-|+..+. +.||||-+.||+ ||.+ ...++.++...|. .+. ++...+||||||
T Consensus 73 LAk~lSILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~----~l~-------dryLd~LSGGQr 141 (252)
T COG4604 73 LAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLE----DLS-------DRYLDELSGGQR 141 (252)
T ss_pred HHHHHHHHHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhccc----chH-------HHhHHhcccchh
Confidence 46777887764 569999999997 4332 2233333333332 111 244568999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEecCchhhhh-cCCEEEEEeCCeEEEccChH
Q 000720 727 QRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS-QKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKYE 804 (1333)
Q Consensus 727 qRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~-~~TvIlvtH~~~~l~-~aD~i~vl~~G~i~~~g~~~ 804 (1333)
||.-+|..+++|.|.++||||+++||.+.+..+++.+.+...+ |||+|+|-||++|+. ++|+|+.|++|+++.+|+++
T Consensus 142 QRAfIAMVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv~~G~~~ 221 (252)
T COG4604 142 QRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPD 221 (252)
T ss_pred hhhhhheeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEEecCCHH
Confidence 9999999999999999999999999999999998865554443 899999999999986 59999999999999999999
Q ss_pred HHHh
Q 000720 805 DLIA 808 (1333)
Q Consensus 805 ~l~~ 808 (1333)
|+.+
T Consensus 222 eii~ 225 (252)
T COG4604 222 EIIQ 225 (252)
T ss_pred HhcC
Confidence 9986
No 339
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.97 E-value=2.4e-31 Score=290.84 Aligned_cols=182 Identities=24% Similarity=0.265 Sum_probs=147.2
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC----------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g---------- 659 (1333)
++++|++++|+. .+.+++ ||++++||+++|+||||||||||+++|+|+.+|++|++ .++|
T Consensus 2 l~~~~l~~~~~~--------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v-~~~g~~~~~~~~~~ 72 (204)
T PRK13538 2 LEARNLACERDE--------RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEV-LWQGEPIRRQRDEY 72 (204)
T ss_pred eEEEEEEEEECC--------EEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEE-EECCEEcccchHHh
Confidence 678999999863 357999 99999999999999999999999999999999999986 5554
Q ss_pred --eEEEEcCCCCCC-CCCHHHHhccCCcC----CHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHH
Q 000720 660 --KKAYVPQSSWIQ-TGTIRENILFGKDM----RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLA 732 (1333)
Q Consensus 660 --~iayv~Q~~~i~-~~Tv~enI~~g~~~----~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LA 732 (1333)
+++|++|++.++ +.|++||+.++.+. ++++.+++++..++... .+.++.+||||||||++||
T Consensus 73 ~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LS~G~~qrl~la 141 (204)
T PRK13538 73 HQDLLYLGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGF-----------EDVPVRQLSAGQQRRVALA 141 (204)
T ss_pred hhheEEeCCccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHH-----------hhCChhhcCHHHHHHHHHH
Confidence 379999998765 47999999876432 22344455555555321 1346789999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEE
Q 000720 733 RAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVM 792 (1333)
Q Consensus 733 RAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl 792 (1333)
||++++|++++|||||++||+.+.+.+.+.+.+...+++|+|++||+++++.. .+|++++
T Consensus 142 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 142 RLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCceEEec
Confidence 99999999999999999999999888876443333457899999999999976 5677666
No 340
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.97 E-value=4.3e-31 Score=298.04 Aligned_cols=196 Identities=20% Similarity=0.252 Sum_probs=148.0
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCC--cCCCCcEEEECC--------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEI--PRISGAAIKVHG-------- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~--~~~~G~~i~~~g-------- 659 (1333)
++++|+++.|+. .+.+++ |+++++||+++|+||||||||||+++|+|+. +|++|++ .++|
T Consensus 2 i~~~nl~~~~~~--------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i-~~~g~~~~~~~~ 72 (248)
T PRK09580 2 LSIKDLHVSVED--------KAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTV-EFKGKDLLELSP 72 (248)
T ss_pred eEEEEEEEEeCC--------eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEE-EECCCccccCCH
Confidence 689999999963 258999 9999999999999999999999999999995 6899986 5544
Q ss_pred ------eEEEEcCCCCCCC-CCHHHHhccCCc----------CCH----HHHHHHHHHcccchHHHhhcCCCccccCCCC
Q 000720 660 ------KKAYVPQSSWIQT-GTIRENILFGKD----------MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERG 718 (1333)
Q Consensus 660 ------~iayv~Q~~~i~~-~Tv~enI~~g~~----------~~~----~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g 718 (1333)
.++|++|++.++. .|..+++.+... .+. ++.++.++..+ ++.+.. ...+
T Consensus 73 ~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------l~~~~~---~~~~ 142 (248)
T PRK09580 73 EDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLK-------MPEDLL---TRSV 142 (248)
T ss_pred HHHhhcceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcC-------CChhhc---ccCC
Confidence 3899999986543 355555432110 000 00111111111 111111 1233
Q ss_pred C-CCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCeEEEecCchhhhhc--CCEEEEEeC
Q 000720 719 I-NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-LSQKTVLYTTHQLEFLDA--ADLVLVMKD 794 (1333)
Q Consensus 719 ~-~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~-~~~~TvIlvtH~~~~l~~--aD~i~vl~~ 794 (1333)
. +||||||||++||||++++|+++||||||++||+.+.+.+.+. ++.+ .+++|||++|||++++.. +|+|++|++
T Consensus 143 ~~~LS~G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~-l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~ 221 (248)
T PRK09580 143 NVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADG-VNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQ 221 (248)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHH-HHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEEC
Confidence 3 7999999999999999999999999999999999998877664 4444 347899999999999875 899999999
Q ss_pred CeEEEccChHHH
Q 000720 795 GKIEQSGKYEDL 806 (1333)
Q Consensus 795 G~i~~~g~~~~l 806 (1333)
|++++.|+++..
T Consensus 222 g~i~~~g~~~~~ 233 (248)
T PRK09580 222 GRIVKSGDFTLV 233 (248)
T ss_pred CeEEEeCCHHHH
Confidence 999999988754
No 341
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=1.2e-31 Score=332.70 Aligned_cols=201 Identities=20% Similarity=0.315 Sum_probs=159.2
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCc-CCCCcEEEECC--------
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP-RISGAAIKVHG-------- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~-~~~G~~i~~~g-------- 659 (1333)
.++++|+++.|+.+ ...+++++ ||++++||+++|+||||||||||+++|+|+.+ |++|++ .++|
T Consensus 259 ~l~~~~l~~~~~~~-----~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i-~~~g~~~~~~~~ 332 (506)
T PRK13549 259 ILEVRNLTAWDPVN-----PHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEI-FIDGKPVKIRNP 332 (506)
T ss_pred eEEEecCccccccc-----cccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEE-EECCEECCCCCH
Confidence 58999999988532 12458999 99999999999999999999999999999998 589986 5544
Q ss_pred ------eEEEEcCCC---CC-CCCCHHHHhccCCc--C------CH----HHHHHHHHHcccchHHHhhcCCCccccCCC
Q 000720 660 ------KKAYVPQSS---WI-QTGTIRENILFGKD--M------RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGER 717 (1333)
Q Consensus 660 ------~iayv~Q~~---~i-~~~Tv~enI~~g~~--~------~~----~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~ 717 (1333)
.++|++|++ .+ .+.|+.||+.++.. + +. ++.++.++.+++. ....+++
T Consensus 333 ~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~----------~~~~~~~ 402 (506)
T PRK13549 333 QQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVK----------TASPELA 402 (506)
T ss_pred HHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCcc----------CCCcccc
Confidence 279999996 34 45799999987531 1 11 1112222222221 0123567
Q ss_pred CCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeCCe
Q 000720 718 GINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGK 796 (1333)
Q Consensus 718 g~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~ 796 (1333)
+.+||||||||++||||++.+|+++||||||++||+.+.+.+++.+.....+|+|||++|||++++.. ||++++|++|+
T Consensus 403 ~~~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~~G~ 482 (506)
T PRK13549 403 IARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGK 482 (506)
T ss_pred cccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEECCE
Confidence 88999999999999999999999999999999999999888876544433468999999999999865 99999999999
Q ss_pred EEEccChHHH
Q 000720 797 IEQSGKYEDL 806 (1333)
Q Consensus 797 i~~~g~~~~l 806 (1333)
++..|+.+++
T Consensus 483 i~~~~~~~~~ 492 (506)
T PRK13549 483 LKGDLINHNL 492 (506)
T ss_pred EEEEeccccC
Confidence 9999988776
No 342
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.97 E-value=5.2e-30 Score=323.73 Aligned_cols=197 Identities=23% Similarity=0.335 Sum_probs=157.8
Q ss_pred CcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCC---CCcEEEECCe----------EEEEcCCCCCC-CCC
Q 000720 610 PTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRI---SGAAIKVHGK----------KAYVPQSSWIQ-TGT 674 (1333)
Q Consensus 610 ~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~---~G~~i~~~g~----------iayv~Q~~~i~-~~T 674 (1333)
++++|+| |+++++||+++|+|||||||||||++|+|+.++. +|++ .++|. +|||+|+++++ +.|
T Consensus 37 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i-~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lT 115 (617)
T TIGR00955 37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSV-LLNGMPIDAKEMRAISAYVQQDDLFIPTLT 115 (617)
T ss_pred ccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEE-EECCEECCHHHHhhhceeeccccccCccCc
Confidence 5678999 9999999999999999999999999999998874 6775 77764 59999999876 569
Q ss_pred HHHHhccCCcCCH----HHHHHHHHHcccchHHHhhcCCCccccCCC--CCCCChHHHHHHHHHHHHccCCCEEEEeCCC
Q 000720 675 IRENILFGKDMRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGER--GINLSGGQKQRIQLARAVYSNSDVYIFDDPF 748 (1333)
Q Consensus 675 v~enI~~g~~~~~----~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~--g~~LSGGQkqRv~LARAl~~~~~illLDEP~ 748 (1333)
|+||+.|+...+. .+.++..+.+.+.+++. +.+..+|.+|+. +..||||||||++||||++.+|++++|||||
T Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lg-L~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPt 194 (617)
T TIGR00955 116 VREHLMFQAHLRMPRRVTKKEKRERVDEVLQALG-LRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPT 194 (617)
T ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcC-chhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCC
Confidence 9999998653321 01111111111111111 233456888874 5789999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCCeEEEecCchh-h-hhcCCEEEEEeCCeEEEccChHHHHh
Q 000720 749 SAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLE-F-LDAADLVLVMKDGKIEQSGKYEDLIA 808 (1333)
Q Consensus 749 saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~-~-l~~aD~i~vl~~G~i~~~g~~~~l~~ 808 (1333)
+|||++++.++.+.+.+...+|+|+|+++|+++ . .+.+|++++|++|++++.|+++++.+
T Consensus 195 sgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~~ 256 (617)
T TIGR00955 195 SGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVP 256 (617)
T ss_pred cchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHHH
Confidence 999999999998876655556899999999995 4 46799999999999999999998854
No 343
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.97 E-value=3.9e-31 Score=288.50 Aligned_cols=182 Identities=26% Similarity=0.326 Sum_probs=147.2
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC----------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g---------- 659 (1333)
++++|+++.|+. ...+++ |++|++||+++|+|+||||||||+++|+|+.+|.+|++ .++|
T Consensus 1 l~i~~l~~~~~~--------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~g~~~~~~~~~~ 71 (201)
T cd03231 1 LEADELTCERDG--------RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRV-LLNGGPLDFQRDSI 71 (201)
T ss_pred CEEEEEEEEeCC--------ceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEE-EECCEecccccHHh
Confidence 468899999864 357999 99999999999999999999999999999999999986 5543
Q ss_pred --eEEEEcCCCCCC-CCCHHHHhccCCcC-CHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHH
Q 000720 660 --KKAYVPQSSWIQ-TGTIRENILFGKDM-RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAV 735 (1333)
Q Consensus 660 --~iayv~Q~~~i~-~~Tv~enI~~g~~~-~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl 735 (1333)
+++|++|++.++ +.|++||+.+.... ..++.++.++..++... ....+.+||||||||++||||+
T Consensus 72 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrl~laral 140 (201)
T cd03231 72 ARGLLYLGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGF-----------EDRPVAQLSAGQQRRVALARLL 140 (201)
T ss_pred hhheEEeccccccCCCcCHHHHHHhhcccccHHHHHHHHHHcCChhh-----------hcCchhhCCHHHHHHHHHHHHH
Confidence 479999998664 68999999876432 33445555555554321 1245789999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhh-hcCCEEEEE
Q 000720 736 YSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFL-DAADLVLVM 792 (1333)
Q Consensus 736 ~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l-~~aD~i~vl 792 (1333)
+++|+++||||||++||+...+.+.+.+.+...+++|+|++||+...+ ..+|+++++
T Consensus 141 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 141 LSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhccceeEec
Confidence 999999999999999999998887764433334589999999998765 558999876
No 344
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.97 E-value=3.4e-31 Score=288.83 Aligned_cols=181 Identities=24% Similarity=0.288 Sum_probs=145.5
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC----------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g---------- 659 (1333)
++++|++++|+. .+.+++ |+++++||+++|+||||||||||+++|+|+.+|++|++ .++|
T Consensus 2 l~~~~l~~~~~~--------~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v-~~~g~~~~~~~~~~ 72 (200)
T PRK13540 2 LDVIELDFDYHD--------QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEI-LFERQSIKKDLCTY 72 (200)
T ss_pred EEEEEEEEEeCC--------eeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeE-EECCCccccCHHHH
Confidence 678999999963 358999 99999999999999999999999999999999999986 5554
Q ss_pred --eEEEEcCCCCCC-CCCHHHHhccCCcC--CHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHH
Q 000720 660 --KKAYVPQSSWIQ-TGTIRENILFGKDM--RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARA 734 (1333)
Q Consensus 660 --~iayv~Q~~~i~-~~Tv~enI~~g~~~--~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARA 734 (1333)
+++|++|++.++ ..|++||+.++... ++....+.++..++. ...+.+..+||||||||++||||
T Consensus 73 ~~~i~~~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G~~~rv~lara 141 (200)
T PRK13540 73 QKQLCFVGHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLE-----------HLIDYPCGLLSSGQKRQVALLRL 141 (200)
T ss_pred HhheEEeccccccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCc-----------hhhhCChhhcCHHHHHHHHHHHH
Confidence 479999998764 68999999986321 122223333333221 12235567899999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhcCCEEEE
Q 000720 735 VYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLV 791 (1333)
Q Consensus 735 l~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~aD~i~v 791 (1333)
++++|+++||||||++||+.+.+.+.+.+.+...++.|+|++||+.+.+..||.-++
T Consensus 142 l~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~d~~~~ 198 (200)
T PRK13540 142 WMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNKADYEEY 198 (200)
T ss_pred HhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhccccchhhc
Confidence 999999999999999999999887776544433468999999999999999987654
No 345
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.97 E-value=2.1e-31 Score=285.49 Aligned_cols=176 Identities=30% Similarity=0.450 Sum_probs=134.9
Q ss_pred EEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECCeEEEEcCCCCC
Q 000720 592 DIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWI 670 (1333)
Q Consensus 592 ~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g~iayv~Q~~~i 670 (1333)
+++|++++|+. .+.+++ |+++++||+++|+||||||||||+++|+|+.+|++|++ .++|.-- .+ .
T Consensus 1 ~~~~l~~~~~~--------~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v-~~~g~~~--~~---~ 66 (180)
T cd03214 1 EVENLSVGYGG--------RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEI-LLDGKDL--AS---L 66 (180)
T ss_pred CeeEEEEEECC--------eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEE-EECCEEC--Cc---C
Confidence 46889999863 358999 99999999999999999999999999999999999986 7766311 00 0
Q ss_pred CCCCHHHHhccCCcCCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCC
Q 000720 671 QTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSA 750 (1333)
Q Consensus 671 ~~~Tv~enI~~g~~~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDEP~sa 750 (1333)
.....+..+.+-. ++++.+++.+. ...++.+||||||||++||||++.+|+++||||||++
T Consensus 67 ~~~~~~~~i~~~~--------q~l~~~gl~~~-----------~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~ 127 (180)
T cd03214 67 SPKELARKIAYVP--------QALELLGLAHL-----------ADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSH 127 (180)
T ss_pred CHHHHHHHHhHHH--------HHHHHcCCHhH-----------hcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccC
Confidence 0001122221110 14444444322 2246789999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHh-C-CCeEEEecCchhhhh-cCCEEEEEeCCeEEEcc
Q 000720 751 VDAHTGTHLFKQCLMGLL-S-QKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSG 801 (1333)
Q Consensus 751 LD~~~~~~l~~~~~~~~~-~-~~TvIlvtH~~~~l~-~aD~i~vl~~G~i~~~g 801 (1333)
||+.+.+.+.+. ++... + ++|+|++||+++++. .||++++|++|++++.|
T Consensus 128 LD~~~~~~~~~~-l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 128 LDIAHQIELLEL-LRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180 (180)
T ss_pred CCHHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 999998877664 44443 3 789999999999985 59999999999998653
No 346
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.97 E-value=7.3e-30 Score=343.54 Aligned_cols=203 Identities=19% Similarity=0.283 Sum_probs=167.2
Q ss_pred CccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC-------
Q 000720 588 DVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG------- 659 (1333)
Q Consensus 588 ~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g------- 659 (1333)
+..|+++|+++.|+.. ....+++ ||+|++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 1935 ~~~L~v~nLsK~Y~~~------~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I-~i~G~~i~~~~ 2007 (2272)
T TIGR01257 1935 TDILRLNELTKVYSGT------SSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDA-TVAGKSILTNI 2007 (2272)
T ss_pred CceEEEEEEEEEECCC------CceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEE-EECCEECcchH
Confidence 4469999999999642 2468999 99999999999999999999999999999999999986 6655
Q ss_pred -----eEEEEcCCCCCC-CCCHHHHhccCCc---CCHH----HHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHH
Q 000720 660 -----KKAYVPQSSWIQ-TGTIRENILFGKD---MRQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQK 726 (1333)
Q Consensus 660 -----~iayv~Q~~~i~-~~Tv~enI~~g~~---~~~~----~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQk 726 (1333)
++|||||++.++ ..|++||+.+... ..++ ..+++++.+++.+ ..+++..+||||||
T Consensus 2008 ~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~-----------~~dk~~~~LSGGqK 2076 (2272)
T TIGR01257 2008 SDVHQNMGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSL-----------YADRLAGTYSGGNK 2076 (2272)
T ss_pred HHHhhhEEEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHH-----------HhcCChhhCCHHHH
Confidence 379999997655 5799999976321 1111 1223344444422 23467789999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeCCeEEEccChHH
Q 000720 727 QRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYED 805 (1333)
Q Consensus 727 qRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~~g~~~~ 805 (1333)
||+++|||++.+|++++|||||+|||+..++.+++.+.+...+|+|||++||++++++. ||||++|++|+++..|++++
T Consensus 2077 qRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~Gs~q~ 2156 (2272)
T TIGR01257 2077 RKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQH 2156 (2272)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999888876544434568999999999999875 99999999999999999999
Q ss_pred HHh
Q 000720 806 LIA 808 (1333)
Q Consensus 806 l~~ 808 (1333)
+.+
T Consensus 2157 Lk~ 2159 (2272)
T TIGR01257 2157 LKS 2159 (2272)
T ss_pred HHH
Confidence 875
No 347
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.97 E-value=1.5e-31 Score=263.11 Aligned_cols=199 Identities=26% Similarity=0.330 Sum_probs=158.2
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC---------
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g--------- 659 (1333)
+|.+++.+|.|... ..|.| +++.+.||.+.+.||+|+|||||++.+.=+.-|.+|+. .+.+
T Consensus 2 sirv~~in~~yg~~--------q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l-~ia~~~fd~s~~~ 72 (242)
T COG4161 2 SIQLNGINCFYGAH--------QALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTL-NIAGNHFDFSKTP 72 (242)
T ss_pred ceEEcccccccccc--------hheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeE-EecccccccccCc
Confidence 58899999999754 57888 99999999999999999999999999998888899986 4432
Q ss_pred ----------eEEEEcCCCCC-CCCCHHHHhccC------CcCCH--HHHHHHHHHcccchHHHhhcCCCccccCCCCCC
Q 000720 660 ----------KKAYVPQSSWI-QTGTIRENILFG------KDMRQ--SFYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1333)
Q Consensus 660 ----------~iayv~Q~~~i-~~~Tv~enI~~g------~~~~~--~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~ 720 (1333)
++|+|+|+-.+ +..||.||+.-. .+-++ .+-.+.++...|. + ..++-+-.
T Consensus 73 ~~k~i~~lr~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~------~-----~adr~plh 141 (242)
T COG4161 73 SDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLK------P-----YADRYPLH 141 (242)
T ss_pred cHHHHHHHHHhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccc------c-----ccccCcee
Confidence 47999998765 467999998632 11111 1112222222222 1 22356789
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeCCeEEE
Q 000720 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQ 799 (1333)
Q Consensus 721 LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~ 799 (1333)
|||||+|||+|||||+.+|+++|+||||+||||+...++.+.+.+....|.|-++|||.+++.+. |.+|+.|++|+|++
T Consensus 142 lsggqqqrvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~va~k~as~vvyme~g~ive 221 (242)
T COG4161 142 LSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVE 221 (242)
T ss_pred cccchhhhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHHHhhhhheEeeecCeeEe
Confidence 99999999999999999999999999999999999888886433333458999999999999976 99999999999999
Q ss_pred ccChHHHHh
Q 000720 800 SGKYEDLIA 808 (1333)
Q Consensus 800 ~g~~~~l~~ 808 (1333)
.|+.+-+.+
T Consensus 222 ~g~a~~ft~ 230 (242)
T COG4161 222 QGDASCFTE 230 (242)
T ss_pred ecchhhccC
Confidence 999877655
No 348
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.97 E-value=4.2e-31 Score=278.22 Aligned_cols=160 Identities=28% Similarity=0.405 Sum_probs=126.9
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECCeEEEEcCCCC
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSW 669 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g~iayv~Q~~~ 669 (1333)
++++|++++|+.. +++++ ||++++||+++|+||||||||||+++|+|+.+|++|++ .++|.- +.
T Consensus 1 l~~~~l~~~~~~~--------~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v-~~~g~~--~~---- 65 (163)
T cd03216 1 LELRGITKRFGGV--------KALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEI-LVDGKE--VS---- 65 (163)
T ss_pred CEEEEEEEEECCe--------EEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEE-EECCEE--CC----
Confidence 4689999999642 58999 99999999999999999999999999999999999986 676631 00
Q ss_pred CCCCCHHHHhccCCcCCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCC
Q 000720 670 IQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFS 749 (1333)
Q Consensus 670 i~~~Tv~enI~~g~~~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDEP~s 749 (1333)
..+.++ .+. +..+. + .+||||||||++||||++++|++++|||||+
T Consensus 66 --~~~~~~-----------~~~---~~i~~--------------~----~qLS~G~~qrl~laral~~~p~illlDEP~~ 111 (163)
T cd03216 66 --FASPRD-----------ARR---AGIAM--------------V----YQLSVGERQMVEIARALARNARLLILDEPTA 111 (163)
T ss_pred --cCCHHH-----------HHh---cCeEE--------------E----EecCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 000000 000 00110 0 1199999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeCCeEEE
Q 000720 750 AVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQ 799 (1333)
Q Consensus 750 aLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~ 799 (1333)
+||+.+.+++.+.+.+...+++|+|++||+++.+.. ||++++|++|++++
T Consensus 112 ~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 112 ALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 999999888876544333458899999999998765 99999999999875
No 349
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.97 E-value=4e-31 Score=329.22 Aligned_cols=210 Identities=19% Similarity=0.323 Sum_probs=162.5
Q ss_pred ccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEEC-C-------
Q 000720 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVH-G------- 659 (1333)
Q Consensus 589 ~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~-g------- 659 (1333)
..++++|++++|+... ....+++++ ||++++||+++|+||||||||||+++|+|+.+|++|++ .++ |
T Consensus 278 ~~l~~~~l~~~~~~~~---~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i-~~~~g~~~~~~~ 353 (520)
T TIGR03269 278 PIIKVRNVSKRYISVD---RGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEV-NVRVGDEWVDMT 353 (520)
T ss_pred ceEEEeccEEEeccCC---CCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEE-EEecCCcccccc
Confidence 3599999999996310 012468999 99999999999999999999999999999999999986 552 1
Q ss_pred ------------eEEEEcCCCCCC-CCCHHHHhccCCc--CCHH----HHHHHHHHcccchHHHhhcCCCccccCCCCCC
Q 000720 660 ------------KKAYVPQSSWIQ-TGTIRENILFGKD--MRQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1333)
Q Consensus 660 ------------~iayv~Q~~~i~-~~Tv~enI~~g~~--~~~~----~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~ 720 (1333)
+++|++|++.++ ..|++||+.++.. .... +..+.++.+++... ......+.++.+
T Consensus 354 ~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~~~~~~ 427 (520)
T TIGR03269 354 KPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEE------KAEEILDKYPDE 427 (520)
T ss_pred ccchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCc------cchhhhhCChhh
Confidence 379999998655 4699999976321 1111 12223333333210 000123567889
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEecCchhhhhc-CCEEEEEeCCeEE
Q 000720 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS-QKTVLYTTHQLEFLDA-ADLVLVMKDGKIE 798 (1333)
Q Consensus 721 LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~-~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~ 798 (1333)
||||||||++||||++.+|+++||||||++||+...+.+.+.+.+...+ ++|||++|||++++.. ||++++|++|+++
T Consensus 428 LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~ 507 (520)
T TIGR03269 428 LSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIV 507 (520)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 9999999999999999999999999999999999988887654443333 7899999999999864 9999999999999
Q ss_pred EccChHHHHh
Q 000720 799 QSGKYEDLIA 808 (1333)
Q Consensus 799 ~~g~~~~l~~ 808 (1333)
+.|+++++.+
T Consensus 508 ~~g~~~~~~~ 517 (520)
T TIGR03269 508 KIGDPEEIVE 517 (520)
T ss_pred EECCHHHHHh
Confidence 9999887754
No 350
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.97 E-value=8.6e-31 Score=287.11 Aligned_cols=183 Identities=25% Similarity=0.295 Sum_probs=148.1
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC----------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g---------- 659 (1333)
++++|+++.|+. ...+++ ||+|++||+++|+||||||||||+++|+|+.+|++|++ .++|
T Consensus 3 l~~~~l~~~~~~--------~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~g~~~~~~~~~~ 73 (207)
T PRK13539 3 LEGEDLACVRGG--------RVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTI-KLDGGDIDDPDVAE 73 (207)
T ss_pred EEEEeEEEEECC--------eEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE-EECCEeCcchhhHh
Confidence 789999999863 257999 99999999999999999999999999999999999986 6665
Q ss_pred eEEEEcCCCCC-CCCCHHHHhccCCcC---CHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHH
Q 000720 660 KKAYVPQSSWI-QTGTIRENILFGKDM---RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAV 735 (1333)
Q Consensus 660 ~iayv~Q~~~i-~~~Tv~enI~~g~~~---~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl 735 (1333)
.++|++|++.+ +..|++||+.+.... ++++..+.++..++.+. ...+..+||||||||++||||+
T Consensus 74 ~~~~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrl~la~al 142 (207)
T PRK13539 74 ACHYLGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPL-----------AHLPFGYLSAGQKRRVALARLL 142 (207)
T ss_pred hcEEecCCCcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHH-----------HcCChhhcCHHHHHHHHHHHHH
Confidence 36899987654 568999999764322 22333444554444321 1245678999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhcCCEEEEEeC
Q 000720 736 YSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKD 794 (1333)
Q Consensus 736 ~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~aD~i~vl~~ 794 (1333)
+++|+++||||||++||+.+.+++.+.+.+...+++|+|++||++++++. |+++.++.
T Consensus 143 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~-~~~~~~~~ 200 (207)
T PRK13539 143 VSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG-ARELDLGP 200 (207)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc-CcEEeecC
Confidence 99999999999999999999888876544434568999999999999987 99988854
No 351
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.97 E-value=7.6e-31 Score=291.36 Aligned_cols=190 Identities=21% Similarity=0.263 Sum_probs=145.2
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEEC--C--------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVH--G-------- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~--g-------- 659 (1333)
++++|++++|+..... +...+.+++ ||++++||+++|+||||||||||+++|+|+++|++|++ .++ |
T Consensus 2 l~~~~l~~~~~~~~~~-~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i-~~~~~g~~~~~~~~ 79 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQG-GVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRI-LVRHEGAWVDLAQA 79 (224)
T ss_pred EEEEeeEEEeecccCC-CcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeE-EEecCCCccchhhc
Confidence 6789999999642000 012468999 99999999999999999999999999999999999986 553 2
Q ss_pred -----------eEEEEcCCCCCC-CCCHHHHhccCCc---CCHH----HHHHHHHHcccchHHHhhcCCCccccCCCCCC
Q 000720 660 -----------KKAYVPQSSWIQ-TGTIRENILFGKD---MRQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1333)
Q Consensus 660 -----------~iayv~Q~~~i~-~~Tv~enI~~g~~---~~~~----~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~ 720 (1333)
+++|++|++.++ +.|++||+.+... .+.. +..+.++..++.++ ....++.+
T Consensus 80 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~ 149 (224)
T TIGR02324 80 SPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPER----------LWHLPPAT 149 (224)
T ss_pred CHHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchh----------hhhCCccc
Confidence 379999998765 5699999976321 1111 11222222222111 12356789
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhh-cCCEEEEE
Q 000720 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVM 792 (1333)
Q Consensus 721 LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~-~aD~i~vl 792 (1333)
||||||||++||||++.+|++++|||||++||+++.+.+.+.+.+...+++|+|++||+.+++. .||+++.+
T Consensus 150 LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~d~i~~~ 222 (224)
T TIGR02324 150 FSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVADRVMDV 222 (224)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceeEec
Confidence 9999999999999999999999999999999999988887654433345789999999999886 59999876
No 352
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.97 E-value=1.9e-31 Score=264.95 Aligned_cols=177 Identities=25% Similarity=0.363 Sum_probs=148.6
Q ss_pred CcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC-------------eEEEEcCCCCCCCCCH
Q 000720 610 PTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------------KKAYVPQSSWIQTGTI 675 (1333)
Q Consensus 610 ~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g-------------~iayv~Q~~~i~~~Tv 675 (1333)
..++|++ ||.+.+||..+|+||+|||||||+++++-+.+|++|.+ ...| +++||.|.|-+|.+||
T Consensus 15 ~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l-~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tV 93 (223)
T COG4619 15 DAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTL-LFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTV 93 (223)
T ss_pred CCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceE-EEcCccccccChHHHHHHHHHHHcCccccccch
Confidence 4678999 99999999999999999999999999999999999986 6666 3699999999999999
Q ss_pred HHHhccCCc-----CCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCC
Q 000720 676 RENILFGKD-----MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSA 750 (1333)
Q Consensus 676 ~enI~~g~~-----~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDEP~sa 750 (1333)
.||+.|.-. .|.......++..++ +.+.+.++..+||||+|||++|+|-|---|+|+||||||||
T Consensus 94 eDNlifP~~~r~rr~dr~aa~~llar~~l----------~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsA 163 (223)
T COG4619 94 EDNLIFPWQIRNRRPDRAAALDLLARFAL----------PDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSA 163 (223)
T ss_pred hhccccchHHhccCCChHHHHHHHHHcCC----------chhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhh
Confidence 999999643 333333333332222 33556678899999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHH-hCCCeEEEecCchhh-hhcCCEEEEEeCCeE
Q 000720 751 VDAHTGTHLFKQCLMGL-LSQKTVLYTTHQLEF-LDAADLVLVMKDGKI 797 (1333)
Q Consensus 751 LD~~~~~~l~~~~~~~~-~~~~TvIlvtH~~~~-l~~aD~i~vl~~G~i 797 (1333)
||++.++.+-+.+.+.. .++..++-||||.+. +.+||+++-+..|++
T Consensus 164 LD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~G~~ 212 (223)
T COG4619 164 LDESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHA 212 (223)
T ss_pred cChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEeccCcc
Confidence 99999888765544544 356899999999987 788999999999876
No 353
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.6e-30 Score=324.42 Aligned_cols=198 Identities=22% Similarity=0.349 Sum_probs=161.7
Q ss_pred ccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC--eEEEEc
Q 000720 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--KKAYVP 665 (1333)
Q Consensus 589 ~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g--~iayv~ 665 (1333)
..++++|++++|+.. +++++ ||++++||+++|+||||||||||+++|+|+++|++|++ .+++ ++||++
T Consensus 318 ~~l~~~~l~~~~~~~--------~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i-~~~~~~~i~~~~ 388 (530)
T PRK15064 318 NALEVENLTKGFDNG--------PLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTV-KWSENANIGYYA 388 (530)
T ss_pred ceEEEEeeEEeeCCc--------eeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEE-EECCceEEEEEc
Confidence 469999999999642 57999 99999999999999999999999999999999999986 6765 689999
Q ss_pred CCCC--CC-CCCHHHHhccCC--cCCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHHccCCC
Q 000720 666 QSSW--IQ-TGTIRENILFGK--DMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSD 740 (1333)
Q Consensus 666 Q~~~--i~-~~Tv~enI~~g~--~~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ 740 (1333)
|++. ++ ..|++||+.+.. ..++++.++.++..++..+ ..+.++.+||||||||++||||++.+|+
T Consensus 389 q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGq~qrv~la~al~~~p~ 458 (530)
T PRK15064 389 QDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQD----------DIKKSVKVLSGGEKGRMLFGKLMMQKPN 458 (530)
T ss_pred ccccccCCCCCcHHHHHHHhccCCccHHHHHHHHHHcCCChh----------HhcCcccccCHHHHHHHHHHHHHhcCCC
Confidence 9974 33 469999986421 1122333444544444211 2346788999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeCCeEE-EccChHHHHh
Q 000720 741 VYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIE-QSGKYEDLIA 808 (1333)
Q Consensus 741 illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~-~~g~~~~l~~ 808 (1333)
++||||||++||+.+.+.+.+. ++.. +.|||+||||++++.. ||++++|++|+++ ..|+++++.+
T Consensus 459 lllLDEPt~~LD~~~~~~l~~~-l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~ 525 (530)
T PRK15064 459 VLVMDEPTNHMDMESIESLNMA-LEKY--EGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYLR 525 (530)
T ss_pred EEEEcCCCCCCCHHHHHHHHHH-HHHC--CCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHHHHH
Confidence 9999999999999998877764 4433 4699999999999865 9999999999998 8899988765
No 354
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=3.2e-31 Score=283.32 Aligned_cols=179 Identities=26% Similarity=0.453 Sum_probs=151.1
Q ss_pred CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC-----------------eEEEEcCCCCCC-CCCHHHH
Q 000720 617 KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-----------------KKAYVPQSSWIQ-TGTIREN 678 (1333)
Q Consensus 617 nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g-----------------~iayv~Q~~~i~-~~Tv~en 678 (1333)
|++.+.-.++||.|++|||||||+++|.|+.+|++|.+ .++| ++|||+|+.-+| ..||+.|
T Consensus 18 ~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I-~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrgN 96 (352)
T COG4148 18 NFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRI-ELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRGN 96 (352)
T ss_pred eccCCCCceEEEecCCCCChhhHHHHHhccCCccccEE-EECCEEeecccCCcccChhhheeeeEeeccccccceEEecc
Confidence 67777768999999999999999999999999999986 6665 479999999876 5799999
Q ss_pred hccCCcCC-HHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHH
Q 000720 679 ILFGKDMR-QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGT 757 (1333)
Q Consensus 679 I~~g~~~~-~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~ 757 (1333)
+.||.... ...++++++..++.+ ..++.+.+||||+||||+|+|||..+|+++|+|||+|+||....+
T Consensus 97 L~YG~~~~~~~~fd~iv~lLGI~h-----------LL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~ 165 (352)
T COG4148 97 LRYGMWKSMRAQFDQLVALLGIEH-----------LLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKR 165 (352)
T ss_pred hhhhhcccchHhHHHHHHHhCcHH-----------HHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhh
Confidence 99997654 445666665555443 334677899999999999999999999999999999999998888
Q ss_pred HHHHHHHHHHhC--CCeEEEecCchhhhh-cCCEEEEEeCCeEEEccChHHHHh
Q 000720 758 HLFKQCLMGLLS--QKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKYEDLIA 808 (1333)
Q Consensus 758 ~l~~~~~~~~~~--~~TvIlvtH~~~~l~-~aD~i~vl~~G~i~~~g~~~~l~~ 808 (1333)
+++-- ++.+.+ +..|++|||.++++. -||+|++|++|++...|..+++..
T Consensus 166 Eilpy-lERL~~e~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A~g~~e~v~~ 218 (352)
T COG4148 166 EILPY-LERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWG 218 (352)
T ss_pred HHHHH-HHHHHHhcCCCEEEEecCHHHHHhhhheEEEecCCeEEecCcHHHHhc
Confidence 87753 343333 568999999998865 599999999999999999999986
No 355
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.97 E-value=2.9e-30 Score=297.87 Aligned_cols=204 Identities=20% Similarity=0.358 Sum_probs=140.0
Q ss_pred CccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECCeEEEEcC
Q 000720 588 DVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQ 666 (1333)
Q Consensus 588 ~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g~iayv~Q 666 (1333)
...|.++|.++++.. ...++| .|++.+|+.++|+|+|||||||+|++|.|-..|..-.+ . +....+
T Consensus 73 s~dvk~~sls~s~~g--------~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~-d----~y~ls~ 139 (614)
T KOG0927|consen 73 SRDVKIESLSLSFHG--------VELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHI-D----FYLLSR 139 (614)
T ss_pred cccceeeeeeeccCC--------ceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCccc-c----hhhhcc
Confidence 346999999998864 467889 99999999999999999999999999999888765543 1 222333
Q ss_pred CCCCCC-CCHHHHhccCCcCCHHHHHH----HHHHccc----------------chH-----HH-hhc-CC-CccccCCC
Q 000720 667 SSWIQT-GTIRENILFGKDMRQSFYEE----VLEGCAL----------------NQD-----IE-MWA-DG-DLSVVGER 717 (1333)
Q Consensus 667 ~~~i~~-~Tv~enI~~g~~~~~~~~~~----v~~~~~l----------------~~d-----~~-~~~-~g-~~t~ig~~ 717 (1333)
+ ..++ .+.-+.+.+...-...+++. ...+|.- +.| +. .+. .| ......+.
T Consensus 140 e-~~ps~~~av~~v~~~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~ 218 (614)
T KOG0927|consen 140 E-IEPSEKQAVQAVVMETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKK 218 (614)
T ss_pred c-CCCchHHHHHHHhhhhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHH
Confidence 3 1222 23333332111111111111 1111111 000 00 000 01 11233467
Q ss_pred CCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC-eEEEecCchhhhhc-CCEEEEEeCC
Q 000720 718 GINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK-TVLYTTHQLEFLDA-ADLVLVMKDG 795 (1333)
Q Consensus 718 g~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~-TvIlvtH~~~~l~~-aD~i~vl~~G 795 (1333)
..+||||||.|++|||||..+|+++||||||++||..+...+-+ .+.. .++ ++|+++|.-++++. |.+|+.|+++
T Consensus 219 ~~~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee-~L~k--~d~~~lVi~sh~QDfln~vCT~Ii~l~~k 295 (614)
T KOG0927|consen 219 VKDLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEE-YLAK--YDRIILVIVSHSQDFLNGVCTNIIHLDNK 295 (614)
T ss_pred hhccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHH-HHHh--ccCceEEEEecchhhhhhHhhhhheeccc
Confidence 78999999999999999999999999999999999988766543 2222 234 89999999999987 9999999999
Q ss_pred e-EEEccChHHHHh
Q 000720 796 K-IEQSGKYEDLIA 808 (1333)
Q Consensus 796 ~-i~~~g~~~~l~~ 808 (1333)
+ +.+.|+|+++..
T Consensus 296 kl~~y~Gnydqy~~ 309 (614)
T KOG0927|consen 296 KLIYYEGNYDQYVK 309 (614)
T ss_pred ceeeecCCHHHHhh
Confidence 9 779999998875
No 356
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.97 E-value=1.1e-30 Score=283.71 Aligned_cols=178 Identities=20% Similarity=0.291 Sum_probs=143.3
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC---------e
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------K 660 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g---------~ 660 (1333)
++++|++++|+.. .+.+ ||++++||+++|+|+||||||||+++|+|+.+|++|++ .++| .
T Consensus 2 l~~~~l~~~~~~~---------~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~g~~i~~~~~~~ 71 (195)
T PRK13541 2 LSLHQLQFNIEQK---------NLFDLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNI-YYKNCNINNIAKPY 71 (195)
T ss_pred eEEEEeeEEECCc---------EEEEEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEE-EECCcccChhhhhh
Confidence 6789999999532 3456 99999999999999999999999999999999999986 6666 2
Q ss_pred EEEEcCCCC-CCCCCHHHHhccCCcC--CHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHHcc
Q 000720 661 KAYVPQSSW-IQTGTIRENILFGKDM--RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYS 737 (1333)
Q Consensus 661 iayv~Q~~~-i~~~Tv~enI~~g~~~--~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~ 737 (1333)
++|++|++. .++.|++||+.++... ..++.++.++.+++.+ ..++++.+||||||||++||||+++
T Consensus 72 ~~~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~~rl~la~al~~ 140 (195)
T PRK13541 72 CTYIGHNLGLKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHD-----------LLDEKCYSLSSGMQKIVAIARLIAC 140 (195)
T ss_pred EEeccCCcCCCccCCHHHHHHHHHHhcccHHHHHHHHHHcCCHh-----------hhccChhhCCHHHHHHHHHHHHHhc
Confidence 789999875 4678999999875432 1223344444444322 2345678999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhcCCEE
Q 000720 738 NSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLV 789 (1333)
Q Consensus 738 ~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~aD~i 789 (1333)
+|++++|||||++||+.+.+.+.+.+.....+++|+|++||+++.++.||.+
T Consensus 141 ~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~ 192 (195)
T PRK13541 141 QSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESSIKSAQIL 192 (195)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCccccchhhee
Confidence 9999999999999999997777664433334679999999999999998876
No 357
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.97 E-value=1e-30 Score=305.01 Aligned_cols=172 Identities=29% Similarity=0.383 Sum_probs=139.1
Q ss_pred EECCCCCChhHHHHHHhCCCcCCCCcEEEECC-----------eEEEEcCCCCCCC-CCHHHHhccCCcC---CH----H
Q 000720 628 VCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-----------KKAYVPQSSWIQT-GTIRENILFGKDM---RQ----S 688 (1333)
Q Consensus 628 ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g-----------~iayv~Q~~~i~~-~Tv~enI~~g~~~---~~----~ 688 (1333)
|+||||||||||+++|+|+.+|++|++ .++| +++|++|++.++. .|++||+.|+... .. +
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I-~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~ 79 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSI-MLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKP 79 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEE-EECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHHH
Confidence 589999999999999999999999986 6655 4799999987764 6999999987432 11 1
Q ss_pred HHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 000720 689 FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL 768 (1333)
Q Consensus 689 ~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~ 768 (1333)
+.++.++..++. ...++.+.+||||||||++||||++++|+++||||||++||+..++.+.+.+.+...
T Consensus 80 ~~~~~l~~~~l~-----------~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~ 148 (325)
T TIGR01187 80 RVLEALRLVQLE-----------EFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQE 148 (325)
T ss_pred HHHHHHHHcCCc-----------chhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH
Confidence 222333333332 233467789999999999999999999999999999999999998888765544333
Q ss_pred C-CCeEEEecCchhhhhc-CCEEEEEeCCeEEEccChHHHHhhcc
Q 000720 769 S-QKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDLIADQN 811 (1333)
Q Consensus 769 ~-~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~~g~~~~l~~~~~ 811 (1333)
+ ++|+|+||||++++.. ||+|++|++|++++.|+++++.+...
T Consensus 149 ~~g~tiiivTHd~~e~~~~~d~i~vl~~G~i~~~g~~~~~~~~~~ 193 (325)
T TIGR01187 149 QLGITFVFVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEIYEEPA 193 (325)
T ss_pred hcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCC
Confidence 3 7999999999998754 99999999999999999999986443
No 358
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.97 E-value=9.7e-31 Score=324.98 Aligned_cols=196 Identities=20% Similarity=0.343 Sum_probs=153.1
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC---------
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g--------- 659 (1333)
.++++|+++.+ + ..+++ ||++++||+++|+||||||||||+++|+|+.+|++|++ .++|
T Consensus 265 ~l~~~~l~~~~--~--------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I-~~~g~~~~~~~~~ 333 (510)
T PRK09700 265 VFEVRNVTSRD--R--------KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEI-RLNGKDISPRSPL 333 (510)
T ss_pred EEEEeCccccC--C--------CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeE-EECCEECCCCCHH
Confidence 59999999853 1 26899 99999999999999999999999999999999999986 5544
Q ss_pred -----eEEEEcCCC---CC-CCCCHHHHhccCCcCC------------HHHHHHHHHHcccchHHHhhcCCCc-cccCCC
Q 000720 660 -----KKAYVPQSS---WI-QTGTIRENILFGKDMR------------QSFYEEVLEGCALNQDIEMWADGDL-SVVGER 717 (1333)
Q Consensus 660 -----~iayv~Q~~---~i-~~~Tv~enI~~g~~~~------------~~~~~~v~~~~~l~~d~~~~~~g~~-t~ig~~ 717 (1333)
+++|++|++ .+ .+.|++||+.++.... ....++.. .+-++.+ |.. ...+++
T Consensus 334 ~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~ 406 (510)
T PRK09700 334 DAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTA-----ENQRELL--ALKCHSVNQN 406 (510)
T ss_pred HHHHCCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHH-----HHHHHhc--CCCCCCccCc
Confidence 379999984 33 4579999998764211 11000000 1112221 111 124577
Q ss_pred CCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhh-cCCEEEEEeCCe
Q 000720 718 GINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMKDGK 796 (1333)
Q Consensus 718 g~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~-~aD~i~vl~~G~ 796 (1333)
+.+|||||||||+||||++.+|+++||||||++||+.+.+.+.+.+.+...+|+|||++|||++.+. .||++++|++|+
T Consensus 407 ~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~ 486 (510)
T PRK09700 407 ITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGR 486 (510)
T ss_pred cccCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCE
Confidence 8899999999999999999999999999999999999988887654443346899999999999875 499999999999
Q ss_pred EEEccCh
Q 000720 797 IEQSGKY 803 (1333)
Q Consensus 797 i~~~g~~ 803 (1333)
+++.++.
T Consensus 487 i~~~~~~ 493 (510)
T PRK09700 487 LTQILTN 493 (510)
T ss_pred EEEEecC
Confidence 9987765
No 359
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.97 E-value=9.5e-31 Score=324.46 Aligned_cols=200 Identities=20% Similarity=0.279 Sum_probs=155.8
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcC-CCCcEEEECC--------
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR-ISGAAIKVHG-------- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~-~~G~~i~~~g-------- 659 (1333)
.++++|++++|+.+ .....+++ ||++++||+++|+||||||||||+++|+|..+| ++|++ .++|
T Consensus 257 ~l~~~~l~~~~~~~-----~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i-~~~g~~~~~~~~ 330 (500)
T TIGR02633 257 ILEARNLTCWDVIN-----PHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNV-FINGKPVDIRNP 330 (500)
T ss_pred eEEEeCCccccccc-----ccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEE-EECCEECCCCCH
Confidence 58999999887422 12357999 999999999999999999999999999999985 79986 5544
Q ss_pred ------eEEEEcCCC----CCCCCCHHHHhccCCc--C------CHH----HHHHHHHHcccchHHHhhcCCCccccCCC
Q 000720 660 ------KKAYVPQSS----WIQTGTIRENILFGKD--M------RQS----FYEEVLEGCALNQDIEMWADGDLSVVGER 717 (1333)
Q Consensus 660 ------~iayv~Q~~----~i~~~Tv~enI~~g~~--~------~~~----~~~~v~~~~~l~~d~~~~~~g~~t~ig~~ 717 (1333)
+++|++|++ .+++.|++||+.++.. . ... +.++.++.+++. ......+
T Consensus 331 ~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~----------~~~~~~~ 400 (500)
T TIGR02633 331 AQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVK----------TASPFLP 400 (500)
T ss_pred HHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCcc----------CCCccCc
Confidence 379999996 3456799999988531 1 111 112222222221 0123467
Q ss_pred CCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeCCe
Q 000720 718 GINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGK 796 (1333)
Q Consensus 718 g~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~ 796 (1333)
+.+||||||||++||||++.+|+++||||||++||+.+.+.+.+.+.....+++|||++|||++++.. ||++++|++|+
T Consensus 401 ~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~~G~ 480 (500)
T TIGR02633 401 IGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGK 480 (500)
T ss_pred cccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCE
Confidence 78999999999999999999999999999999999999888776443333468999999999999864 99999999999
Q ss_pred EEEccChHH
Q 000720 797 IEQSGKYED 805 (1333)
Q Consensus 797 i~~~g~~~~ 805 (1333)
++..++.++
T Consensus 481 i~~~~~~~~ 489 (500)
T TIGR02633 481 LKGDFVNHA 489 (500)
T ss_pred EEEEEcccc
Confidence 998765543
No 360
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.97 E-value=1.1e-30 Score=287.01 Aligned_cols=185 Identities=18% Similarity=0.177 Sum_probs=144.2
Q ss_pred cccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECCeEEEEcCCCCCCC-CCHHHHhccCCc---CCH
Q 000720 613 KLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQT-GTIRENILFGKD---MRQ 687 (1333)
Q Consensus 613 ~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g~iayv~Q~~~i~~-~Tv~enI~~g~~---~~~ 687 (1333)
+++| ||++++||+++|+||||||||||+++|+|+.+|++|++..+++....+.|++.+++ .|++||+.+... .+.
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~~~~~~~~l~~~ltv~enl~~~~~~~~~~~ 81 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDALPLGANSFILPGLTGEENARMMASLYGLDG 81 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCceeccccccccCCcCcHHHHHHHHHHHcCCCH
Confidence 4788 99999999999999999999999999999999999997326665444556666654 699999987432 222
Q ss_pred HHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 000720 688 SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL 767 (1333)
Q Consensus 688 ~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~ 767 (1333)
....+.+. +...++. ..+.+..+||||||||++||||++.+|+++|||||++++|+.+.+.+.+.+.+.
T Consensus 82 ~~~~~~~~------~~~~l~~----~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~- 150 (213)
T PRK15177 82 DEFSHFCY------QLTQLEQ----CYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQ- 150 (213)
T ss_pred HHHHHHHH------HHhChhH----HhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHH-
Confidence 22211110 1111111 123567789999999999999999999999999999999999988776654333
Q ss_pred hCCCeEEEecCchhhhh-cCCEEEEEeCCeEEEccChHHHHh
Q 000720 768 LSQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKYEDLIA 808 (1333)
Q Consensus 768 ~~~~TvIlvtH~~~~l~-~aD~i~vl~~G~i~~~g~~~~l~~ 808 (1333)
.+++|+|++||+++.+. .||++++|++|++++.|+.++..+
T Consensus 151 ~~~~~ii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 192 (213)
T PRK15177 151 LQQKGLIVLTHNPRLIKEHCHAFGVLLHGKITMCEDLAQATA 192 (213)
T ss_pred hhCCcEEEEECCHHHHHHhcCeeEEEECCeEEEeCCHHHHHH
Confidence 45689999999999986 599999999999999998887754
No 361
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.97 E-value=5.1e-31 Score=277.28 Aligned_cols=203 Identities=22% Similarity=0.362 Sum_probs=165.7
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC---------
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g--------- 659 (1333)
.+++++++.++.+ ...++| +|++++|++.+++|||||||||.+++|+|+++|++|.+ .++|
T Consensus 2 ~L~ie~vtK~Fg~--------k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I-~~~g~~~~~~~~~ 72 (300)
T COG4152 2 ALEIEGVTKSFGD--------KKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEI-TWNGGPLSQEIKN 72 (300)
T ss_pred ceEEecchhccCc--------eeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceE-EEcCcchhhhhhh
Confidence 4788899888864 357888 99999999999999999999999999999999999997 7777
Q ss_pred eEEEEcCCCCC-CCCCHHHHhccCCc---CCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHH
Q 000720 660 KKAYVPQSSWI-QTGTIRENILFGKD---MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAV 735 (1333)
Q Consensus 660 ~iayv~Q~~~i-~~~Tv~enI~~g~~---~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl 735 (1333)
+|||.|.+.-+ +..||.|-+.|-.. +.+...++- +...++.+.-.. .-.++..+||.|.+|+|++--|+
T Consensus 73 rIGyLPEERGLy~k~tv~dql~yla~LkGm~~~e~~~~-----~~~wLer~~i~~--~~~~kIk~LSKGnqQKIQfisav 145 (300)
T COG4152 73 RIGYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKK-----LQAWLERLEIVG--KKTKKIKELSKGNQQKIQFISAV 145 (300)
T ss_pred hcccChhhhccCccCcHHHHHHHHHHhcCCcHHHHHHH-----HHHHHHhccccc--cccchHHHhhhhhhHHHHHHHHH
Confidence 78999999876 56899999987433 222222211 222334333221 12367889999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeCCeEEEccChHHHHh
Q 000720 736 YSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDLIA 808 (1333)
Q Consensus 736 ~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~~g~~~~l~~ 808 (1333)
.++|++++||||||||||.+.+-+-+.++....+|.|||++||+|+.++. ||++++|++|+.+-.|+.+++.+
T Consensus 146 iHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G~v~~ir~ 219 (300)
T COG4152 146 IHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRR 219 (300)
T ss_pred hcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhheecCCceEEeccHHHHHH
Confidence 99999999999999999988665555444555679999999999999976 99999999999999999999876
No 362
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.97 E-value=1.2e-30 Score=282.32 Aligned_cols=160 Identities=24% Similarity=0.365 Sum_probs=127.6
Q ss_pred cccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC---------------eEEEEcCCC--CCCC
Q 000720 611 TIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------------KKAYVPQSS--WIQT 672 (1333)
Q Consensus 611 ~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g---------------~iayv~Q~~--~i~~ 672 (1333)
...+++ ||++++||+++|+||||||||||+++|+|..+|++|++ .++| .++|++|+| .+++
T Consensus 5 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i-~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 83 (190)
T TIGR01166 5 PEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAV-LIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFA 83 (190)
T ss_pred cceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeE-EECCEEccccccchHHHHhhEEEEecChhhcccc
Confidence 457999 99999999999999999999999999999999999986 5543 379999998 4667
Q ss_pred CCHHHHhccCCc---CCHH----HHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEe
Q 000720 673 GTIRENILFGKD---MRQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFD 745 (1333)
Q Consensus 673 ~Tv~enI~~g~~---~~~~----~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLD 745 (1333)
.|++||+.++.. .+.. +.++.++..++. ....+++.+||||||||++||||++++|+++|||
T Consensus 84 ~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G~~qrv~laral~~~p~llllD 152 (190)
T TIGR01166 84 ADVDQDVAFGPLNLGLSEAEVERRVREALTAVGAS-----------GLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLD 152 (190)
T ss_pred ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCch-----------hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 899999987532 1211 122233333332 1234567899999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhh
Q 000720 746 DPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEF 782 (1333)
Q Consensus 746 EP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~ 782 (1333)
|||++||+.+.+.+.+.+.+...+++|+|++||++++
T Consensus 153 EPt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~~ 189 (190)
T TIGR01166 153 EPTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVDL 189 (190)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeecccc
Confidence 9999999999888876544433458899999999875
No 363
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.97 E-value=2.2e-30 Score=281.98 Aligned_cols=179 Identities=25% Similarity=0.271 Sum_probs=139.6
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC----------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g---------- 659 (1333)
++++|.+++|+. ...+++ ||++++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 1 l~~~~l~~~~~~--------~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~g~~~~~~~~~~ 71 (198)
T TIGR01189 1 LAARNLACSRGE--------RMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEV-RWNGTALAEQRDEP 71 (198)
T ss_pred CEEEEEEEEECC--------EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEE-EECCEEcccchHHh
Confidence 467899999863 357999 99999999999999999999999999999999999986 5554
Q ss_pred --eEEEEcCCCCCC-CCCHHHHhccCCcCC---HHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHH
Q 000720 660 --KKAYVPQSSWIQ-TGTIRENILFGKDMR---QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLAR 733 (1333)
Q Consensus 660 --~iayv~Q~~~i~-~~Tv~enI~~g~~~~---~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LAR 733 (1333)
.++|++|++.++ ..|++||+.+..... +....+.++..++.+. .+.++.+||||||||++|||
T Consensus 72 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv~la~ 140 (198)
T TIGR01189 72 HRNILYLGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGF-----------EDLPAAQLSAGQQRRLALAR 140 (198)
T ss_pred hhheEEeccCcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHH-----------hcCChhhcCHHHHHHHHHHH
Confidence 368999998765 479999997653221 2233444444444321 23567899999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhcCCEEE
Q 000720 734 AVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVL 790 (1333)
Q Consensus 734 Al~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~aD~i~ 790 (1333)
|++++|++++|||||++||+.+.+.+.+.+.+...+++|+|++||+...+. +++++
T Consensus 141 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~-~~~~~ 196 (198)
T TIGR01189 141 LWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLGLV-EAREL 196 (198)
T ss_pred HHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEccccccc-ceEEe
Confidence 999999999999999999999877776544333356889999999975432 35544
No 364
>PLN03211 ABC transporter G-25; Provisional
Probab=99.97 E-value=2.9e-30 Score=325.62 Aligned_cols=191 Identities=27% Similarity=0.370 Sum_probs=154.1
Q ss_pred CcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCC--CCcEEEECC---------eEEEEcCCCCCC-CCCHH
Q 000720 610 PTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRI--SGAAIKVHG---------KKAYVPQSSWIQ-TGTIR 676 (1333)
Q Consensus 610 ~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~--~G~~i~~~g---------~iayv~Q~~~i~-~~Tv~ 676 (1333)
++.+|+| |+++++||+++|+||||||||||+++|+|..+|. +|++ .++| ++|||+|++.++ ..||+
T Consensus 80 ~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I-~inG~~~~~~~~~~i~yv~Q~~~l~~~lTV~ 158 (659)
T PLN03211 80 ERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTI-LANNRKPTKQILKRTGFVTQDDILYPHLTVR 158 (659)
T ss_pred CCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEE-EECCEECchhhccceEEECcccccCCcCCHH
Confidence 3568999 9999999999999999999999999999999875 7886 6665 379999998876 56999
Q ss_pred HHhccCCc------CCHHH----HHHHHHHcccchHHHhhcCCCccccCC-CCCCCChHHHHHHHHHHHHccCCCEEEEe
Q 000720 677 ENILFGKD------MRQSF----YEEVLEGCALNQDIEMWADGDLSVVGE-RGINLSGGQKQRIQLARAVYSNSDVYIFD 745 (1333)
Q Consensus 677 enI~~g~~------~~~~~----~~~v~~~~~l~~d~~~~~~g~~t~ig~-~g~~LSGGQkqRv~LARAl~~~~~illLD 745 (1333)
||+.|... ..++. .+++++..++ .+..+|.+|+ .+.+||||||||++||||++++|++++||
T Consensus 159 E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLD 231 (659)
T PLN03211 159 ETLVFCSLLRLPKSLTKQEKILVAESVISELGL-------TKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILD 231 (659)
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCC-------hhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEe
Confidence 99988531 11211 2223333322 2233566654 47899999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhh-h-hcCCEEEEEeCCeEEEccChHHHHh
Q 000720 746 DPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEF-L-DAADLVLVMKDGKIEQSGKYEDLIA 808 (1333)
Q Consensus 746 EP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~-l-~~aD~i~vl~~G~i~~~g~~~~l~~ 808 (1333)
|||+|||+.++.++.+.+.+...+|+|||++||+++. + +.+|+|++|++|++++.|+.+++.+
T Consensus 232 EPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~ 296 (659)
T PLN03211 232 EPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMA 296 (659)
T ss_pred CCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHH
Confidence 9999999999998887554433468999999999974 4 5699999999999999999988864
No 365
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.97 E-value=2.1e-30 Score=321.16 Aligned_cols=195 Identities=19% Similarity=0.304 Sum_probs=154.7
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC---------
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g--------- 659 (1333)
.++++|+++. ..+++ ||++++||+++|+||||||||||+++|+|+.+|++|++ .++|
T Consensus 257 ~l~~~~~~~~------------~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i-~~~g~~~~~~~~~ 323 (501)
T PRK11288 257 RLRLDGLKGP------------GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQV-YLDGKPIDIRSPR 323 (501)
T ss_pred EEEEeccccC------------CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceE-EECCEECCCCCHH
Confidence 5788888631 36889 99999999999999999999999999999999999986 5654
Q ss_pred -----eEEEEcCCC----CCCCCCHHHHhccCCcC---------CH----HHHHHHHHHcccchHHHhhcCCCccccCCC
Q 000720 660 -----KKAYVPQSS----WIQTGTIRENILFGKDM---------RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGER 717 (1333)
Q Consensus 660 -----~iayv~Q~~----~i~~~Tv~enI~~g~~~---------~~----~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~ 717 (1333)
.++|++|++ ...+.|+.||+.++... .. +..++.++.+++. ......+
T Consensus 324 ~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~----------~~~~~~~ 393 (501)
T PRK11288 324 DAIRAGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIK----------TPSREQL 393 (501)
T ss_pred HHHhCCCEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcc----------cCCccCc
Confidence 368999996 34568999999875321 11 0111222222221 1124567
Q ss_pred CCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhh-cCCEEEEEeCCe
Q 000720 718 GINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMKDGK 796 (1333)
Q Consensus 718 g~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~-~aD~i~vl~~G~ 796 (1333)
+.+||||||||++||||++.+|+++||||||++||+.+.+.+.+.+.+...+|.|||++|||++++. .||++++|++|+
T Consensus 394 ~~~LSgGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g~ 473 (501)
T PRK11288 394 IMNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGR 473 (501)
T ss_pred cccCCHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECCE
Confidence 8899999999999999999999999999999999999988887644333445899999999999985 499999999999
Q ss_pred EEEccChHHHH
Q 000720 797 IEQSGKYEDLI 807 (1333)
Q Consensus 797 i~~~g~~~~l~ 807 (1333)
+++.|+.+++.
T Consensus 474 i~~~~~~~~~~ 484 (501)
T PRK11288 474 IAGELAREQAT 484 (501)
T ss_pred EEEEEccccCC
Confidence 99999887654
No 366
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=99.97 E-value=5.2e-27 Score=272.83 Aligned_cols=442 Identities=19% Similarity=0.223 Sum_probs=283.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------cCCCChHHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHH
Q 000720 331 ESLTQRQWYFGANRIGIRVRSALTVLIYKRSMAIK------FAGPSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVF 403 (1333)
Q Consensus 331 ~~l~~~~~~~~~~~~~~rir~~l~~~iy~K~L~ls------~~~~~~G~i~nlms~D~~~i~~~~~-~~~~~w~~plqi~ 403 (1333)
.++......|...-+.+|.|.-+..-+|++=++-. +.+...-.---+++.|++++..... ....+..+|+-++
T Consensus 135 ~s~~~a~~ky~~~~L~Lr~R~~ltk~lh~~Y~k~~~yYkis~~d~ridNPDQrltqDv~kf~~~l~sl~s~l~~a~~di~ 214 (659)
T KOG0060|consen 135 ISLLNALLKFTTNELYLRFRKNLTKYLHRLYFKGFTYYKLSNLDDRIDNPDQRLTQDVEKFCRQLSSLYSNLLKAPFDLV 214 (659)
T ss_pred HHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHhccceEEEecccccccCChHHHHhHHHHHHHHHHHHHHHhhhccceeee
Confidence 34555567788888999999999999998876532 2211111112368889998876543 3445666788888
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchHHH----
Q 000720 404 LALVILYKNLGAAPAFAALFSTIFVMV----SNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQE---- 475 (1333)
Q Consensus 404 ~~l~lL~~~lG~~a~l~gl~~~~~~~~----~~~~~~~~~~~~~~~~~~~~D~R~~~~~E~L~~Ir~IK~~~wE~~---- 475 (1333)
.-.+.++...||+.-..-++-.++... +..|++++....++. .-|-|-+- +++..|-..|-+|+-+..
T Consensus 215 ~Y~~~l~~s~g~~gp~~i~~Yf~~~~vi~~~L~~pI~~l~~~qekl---EGdfRy~h-~rlr~NaE~iAFY~g~~~E~~~ 290 (659)
T KOG0060|consen 215 YYTFRLFESAGWLGPVSIFAYFLIGTVINKTLRGPIVKLTVEQEKL---EGDFRYKH-SRLRVNAEEIAFYRGGQVEHQR 290 (659)
T ss_pred hhhhHHhhhcCcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHh---hcchhhhe-eeeeecchhhhhhccCchHHHH
Confidence 888889988883322221222222222 334445554444433 23444333 245566677888887643
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhc---CCCCHHHHHHHH----HHHHH
Q 000720 476 ----FLKKLLRLREIERDSLKKYLYTCSAIAFLFWASPTLVSVITFGVC---ILLK---TPLTSGAVLSAL----ATFRI 541 (1333)
Q Consensus 476 ----f~~~i~~~R~~E~~~l~~~~~~~a~~~~~~~~~p~lv~~~tF~~~---~~~~---~~Lt~~~vft~l----alf~~ 541 (1333)
|.+.++.+|+-=... ..+..+..++- .+.+++.+.+. ++.| ..++++..++-+ ..|.-
T Consensus 291 ~~~~f~~Lv~~l~~l~~~r----~~l~f~~n~~~----Ylg~ilsy~vi~~p~Fs~h~y~~~s~aEL~~~i~~na~~~i~ 362 (659)
T KOG0060|consen 291 TDQRFRNLVQHLRELMSFR----FWLGFIDNIFD----YLGGILSYVVIAIPFFSGHVYDDLSPAELSGLISNNAFVFIY 362 (659)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH----HHHhhheeeEEeeeeecccccCCcCHHHHHHHHhhhHHHHHH
Confidence 444444444321111 11111111111 11111111111 1123 347777766544 23334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC--C-------------CCCCC---CC----CCCCCCccEEEeeeEEE
Q 000720 542 LQEPIYNLPELISMIAQTKVSLYRIQEFIKEDN--Q-------------KKPIT---EP----TSKASDVAIDIEAGEYA 599 (1333)
Q Consensus 542 l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e--~-------------~~~~~---~~----~~~~~~~~I~i~~~~fs 599 (1333)
|...+..+...-..+.+--.-..||.++.+.-. . .+... .. .....|..|++++++++
T Consensus 363 Li~~f~~l~~~~~~ls~lsGyt~Ri~el~~~l~d~~~~~~~~~~~~~~~~E~~~~l~~~~G~~~~~~~Dn~i~~e~v~l~ 442 (659)
T KOG0060|consen 363 LISAFGRLVDLSRDLSRLSGYTHRIGELMEVLDDLSSGSQECTMEEEELGEAEWGLSLPPGSGKAEPADNAIEFEEVSLS 442 (659)
T ss_pred HHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHhccCCcchhhhhhhhhhhhhccCCCCCCcccccccceEEeeeeeec
Confidence 445555555555555665666778888775211 0 00000 00 11234678999999999
Q ss_pred cCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEE-CC---eEEEEcCCCCCCCCC
Q 000720 600 WDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKV-HG---KKAYVPQSSWIQTGT 674 (1333)
Q Consensus 600 w~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~-~g---~iayv~Q~~~i~~~T 674 (1333)
=|++ .....+| |++|+.|+-+.|+||||||||+|++.+.|+-+..+|++... ++ .+-|+||.|....||
T Consensus 443 tPt~------g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~~~lfflPQrPYmt~GT 516 (659)
T KOG0060|consen 443 TPTN------GDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGPKDLFFLPQRPYMTLGT 516 (659)
T ss_pred CCCC------CceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCCCceEEecCCCCccccc
Confidence 8764 2334455 99999999999999999999999999999999888876322 23 388999999999999
Q ss_pred HHHHhccCC--------cCCHHHHHHHHHHcccchHHHhhcCCCc-cccCCCCCCCChHHHHHHHHHHHHccCCCEEEEe
Q 000720 675 IRENILFGK--------DMRQSFYEEVLEGCALNQDIEMWADGDL-SVVGERGINLSGGQKQRIQLARAVYSNSDVYIFD 745 (1333)
Q Consensus 675 v~enI~~g~--------~~~~~~~~~v~~~~~l~~d~~~~~~g~~-t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLD 745 (1333)
.||-+.+.. ..+.++..+.++..++.+-++. ..|.+ ..+-+-...||+|||||++.||-+|++|++-+||
T Consensus 517 LRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r-~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~kPk~AiLD 595 (659)
T KOG0060|consen 517 LRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLER-EGGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAILD 595 (659)
T ss_pred hhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHH-hCCCCchhhccHHhhcCHHHHHHHHHHHHHhcCCceEEee
Confidence 999999872 1234566677777777654443 34443 3334567789999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhcCCEEEEEeC
Q 000720 746 DPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKD 794 (1333)
Q Consensus 746 EP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~aD~i~vl~~ 794 (1333)
|.|||||.++...++..|. ..|.|.|-|.|+-..-+.-|.++-|+.
T Consensus 596 E~TSAv~~dvE~~~Yr~~r---~~giT~iSVgHRkSL~kfHd~~L~~~g 641 (659)
T KOG0060|consen 596 ECTSAVTEDVEGALYRKCR---EMGITFISVGHRKSLWKFHDYVLRMDG 641 (659)
T ss_pred chhhhccHHHHHHHHHHHH---HcCCeEEEeccHHHHHhhhhEEEEecC
Confidence 9999999999888887543 358899999999988888999999975
No 367
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.97 E-value=1.2e-29 Score=317.59 Aligned_cols=198 Identities=27% Similarity=0.378 Sum_probs=158.0
Q ss_pred ccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC--eEEEEc
Q 000720 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--KKAYVP 665 (1333)
Q Consensus 589 ~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g--~iayv~ 665 (1333)
..++++|++++|+. .+.+++ ||+|++||+++|+||||||||||+++|+|+.+|++|++ .+++ ++||++
T Consensus 321 ~~l~~~~l~~~~~~--------~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i-~~~~~~~i~~v~ 391 (552)
T TIGR03719 321 KVIEAENLSKGFGD--------KLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTI-KIGETVKLAYVD 391 (552)
T ss_pred eEEEEeeEEEEECC--------eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEE-EECCceEEEEEe
Confidence 46999999999853 358999 99999999999999999999999999999999999987 6655 589999
Q ss_pred CCCC-C-CCCCHHHHhccCCcCC-----HHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHHccC
Q 000720 666 QSSW-I-QTGTIRENILFGKDMR-----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSN 738 (1333)
Q Consensus 666 Q~~~-i-~~~Tv~enI~~g~~~~-----~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~ 738 (1333)
|++. + .+.|++||+.++.... +.+.++.++..++.. ...+.++.+||||||||++||||++.+
T Consensus 392 q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgGe~qrv~la~al~~~ 461 (552)
T TIGR03719 392 QSRDALDPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKG----------SDQQKKVGQLSGGERNRVHLAKTLKSG 461 (552)
T ss_pred CCccccCCCCcHHHHHHhhccccccCcchHHHHHHHHhCCCCh----------hHhcCchhhCCHHHHHHHHHHHHHhhC
Confidence 9962 4 4579999998864321 111222333333211 113467789999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeC-CeEE-EccChHHHHh
Q 000720 739 SDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKD-GKIE-QSGKYEDLIA 808 (1333)
Q Consensus 739 ~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~-G~i~-~~g~~~~l~~ 808 (1333)
|+++||||||++||+.+.+.+.+. ++.. +.|||+||||++++.. ||+|++|++ |++. ..|+++++.+
T Consensus 462 p~lllLDEPt~~LD~~~~~~l~~~-l~~~--~~~viivsHd~~~~~~~~d~i~~l~~~~~~~~~~g~~~~~~~ 531 (552)
T TIGR03719 462 GNVLLLDEPTNDLDVETLRALEEA-LLEF--AGCAVVISHDRWFLDRIATHILAFEGDSHVEWFEGNYSEYEE 531 (552)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHH-HHHC--CCeEEEEeCCHHHHHHhCCEEEEEECCCeEEEeCCCHHHHHH
Confidence 999999999999999998877654 4433 2499999999999865 999999986 5875 6788877755
No 368
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.97 E-value=6.4e-30 Score=263.34 Aligned_cols=140 Identities=31% Similarity=0.525 Sum_probs=125.1
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC--eEEEEcCC
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--KKAYVPQS 667 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g--~iayv~Q~ 667 (1333)
++++|+++.|+.. +.+++ |+++++||+++|+||||||||||+++|+|+.+|.+|++ .+++ .++|++|
T Consensus 1 l~~~~l~~~~~~~--------~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i-~~~~~~~i~~~~~- 70 (144)
T cd03221 1 IELENLSKTYGGK--------LLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIV-TWGSTVKIGYFEQ- 70 (144)
T ss_pred CEEEEEEEEECCc--------eEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEE-EECCeEEEEEEcc-
Confidence 4688999998532 57899 99999999999999999999999999999999999986 7776 5788888
Q ss_pred CCCCCCCHHHHhccCCcCCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCC
Q 000720 668 SWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDP 747 (1333)
Q Consensus 668 ~~i~~~Tv~enI~~g~~~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDEP 747 (1333)
||+|||||++||||++++|++++||||
T Consensus 71 -----------------------------------------------------lS~G~~~rv~laral~~~p~illlDEP 97 (144)
T cd03221 71 -----------------------------------------------------LSGGEKMRLALAKLLLENPNLLLLDEP 97 (144)
T ss_pred -----------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeCCe
Q 000720 748 FSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGK 796 (1333)
Q Consensus 748 ~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~ 796 (1333)
+++||+.+...+.+. ++.+ ++|+|++||+++.+.. ||++++|++|+
T Consensus 98 ~~~LD~~~~~~l~~~-l~~~--~~til~~th~~~~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 98 TNHLDLESIEALEEA-LKEY--PGTVILVSHDRYFLDQVATKIIELEDGK 144 (144)
T ss_pred ccCCCHHHHHHHHHH-HHHc--CCEEEEEECCHHHHHHhCCEEEEEeCCC
Confidence 999999998877654 4433 5799999999999865 99999999985
No 369
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.97 E-value=3.5e-30 Score=319.14 Aligned_cols=194 Identities=19% Similarity=0.351 Sum_probs=153.9
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC---------
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g--------- 659 (1333)
.++++|+++ ..+++ ||++++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 257 ~l~~~~l~~-------------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I-~~~g~~i~~~~~~ 322 (501)
T PRK10762 257 RLKVDNLSG-------------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYV-TLDGHEVVTRSPQ 322 (501)
T ss_pred EEEEeCccc-------------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEE-EECCEECCCCCHH
Confidence 578888752 24888 99999999999999999999999999999999999986 6654
Q ss_pred -----eEEEEcCCC---CC-CCCCHHHHhccCCc---------CCHH----HHHHHHHHcccchHHHhhcCCCccccCCC
Q 000720 660 -----KKAYVPQSS---WI-QTGTIRENILFGKD---------MRQS----FYEEVLEGCALNQDIEMWADGDLSVVGER 717 (1333)
Q Consensus 660 -----~iayv~Q~~---~i-~~~Tv~enI~~g~~---------~~~~----~~~~v~~~~~l~~d~~~~~~g~~t~ig~~ 717 (1333)
.+||++|++ .+ ++.|++||+.++.. .+.. +.++.++.+++. ....+++
T Consensus 323 ~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~----------~~~~~~~ 392 (501)
T PRK10762 323 DGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIK----------TPSMEQA 392 (501)
T ss_pred HHHHCCCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCC----------CCCccCc
Confidence 379999997 33 45799999987521 1111 111222222221 1124577
Q ss_pred CCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeCCe
Q 000720 718 GINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGK 796 (1333)
Q Consensus 718 g~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~ 796 (1333)
+.+||||||||++||||++.+|+++||||||++||+.+.+.+.+.+.+...+|+|+|++|||++++.. ||+|++|++|+
T Consensus 393 ~~~LSgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~ 472 (501)
T PRK10762 393 IGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGR 472 (501)
T ss_pred hhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCE
Confidence 88999999999999999999999999999999999999888876544433468999999999998764 99999999999
Q ss_pred EEEccChHHHH
Q 000720 797 IEQSGKYEDLI 807 (1333)
Q Consensus 797 i~~~g~~~~l~ 807 (1333)
++..|+.+++.
T Consensus 473 i~~~~~~~~~~ 483 (501)
T PRK10762 473 ISGEFTREQAT 483 (501)
T ss_pred EEEEeccccCC
Confidence 99999887653
No 370
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.97 E-value=1.7e-29 Score=316.18 Aligned_cols=198 Identities=25% Similarity=0.364 Sum_probs=158.8
Q ss_pred ccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC--eEEEEc
Q 000720 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--KKAYVP 665 (1333)
Q Consensus 589 ~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g--~iayv~ 665 (1333)
..++++|++++|+. .+.+++ ||+|++||+++|+||||||||||+++|+|+++|++|++ .+++ ++||+|
T Consensus 323 ~~l~~~~l~~~~~~--------~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i-~~~~~~~i~~v~ 393 (556)
T PRK11819 323 KVIEAENLSKSFGD--------RLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTI-KIGETVKLAYVD 393 (556)
T ss_pred eEEEEEeEEEEECC--------eeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEE-EECCceEEEEEe
Confidence 46999999999953 358999 99999999999999999999999999999999999987 6655 589999
Q ss_pred CCC-CC-CCCCHHHHhccCCcCC-----HHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHHccC
Q 000720 666 QSS-WI-QTGTIRENILFGKDMR-----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSN 738 (1333)
Q Consensus 666 Q~~-~i-~~~Tv~enI~~g~~~~-----~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~ 738 (1333)
|++ .+ .+.|++||+.++.... ....++.++..++.. ...+.++.+||||||||++||||++.+
T Consensus 394 q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgG~~qrv~la~al~~~ 463 (556)
T PRK11819 394 QSRDALDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKG----------GDQQKKVGVLSGGERNRLHLAKTLKQG 463 (556)
T ss_pred CchhhcCCCCCHHHHHHhhcccccccccHHHHHHHHHhCCCCh----------hHhcCchhhCCHHHHHHHHHHHHHhcC
Confidence 996 44 4569999998764221 111222333322211 113467789999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeC-CeEE-EccChHHHHh
Q 000720 739 SDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKD-GKIE-QSGKYEDLIA 808 (1333)
Q Consensus 739 ~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~-G~i~-~~g~~~~l~~ 808 (1333)
|+++||||||++||+.+.+.+.+. +... . .|+|+||||++++.. ||+|++|++ |++. ..|+++++.+
T Consensus 464 p~lllLDEPt~~LD~~~~~~l~~~-l~~~-~-~tvi~vtHd~~~~~~~~d~i~~l~~~g~~~~~~g~~~~~~~ 533 (556)
T PRK11819 464 GNVLLLDEPTNDLDVETLRALEEA-LLEF-P-GCAVVISHDRWFLDRIATHILAFEGDSQVEWFEGNFQEYEE 533 (556)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHH-HHhC-C-CeEEEEECCHHHHHHhCCEEEEEECCCeEEEecCCHHHHHH
Confidence 999999999999999998877764 4433 3 499999999999865 999999986 7876 6899988876
No 371
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.7e-29 Score=319.61 Aligned_cols=199 Identities=24% Similarity=0.435 Sum_probs=158.5
Q ss_pred CccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC--eEEEE
Q 000720 588 DVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--KKAYV 664 (1333)
Q Consensus 588 ~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g--~iayv 664 (1333)
+..|+++|++++|+. ..++++ ||+|++|++++|+||||||||||+++|+|+.+|++|++ .+.+ ++||+
T Consensus 310 ~~~l~~~~l~~~y~~--------~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i-~~~~~~~igy~ 380 (638)
T PRK10636 310 NPLLKMEKVSAGYGD--------RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEI-GLAKGIKLGYF 380 (638)
T ss_pred CceEEEEeeEEEeCC--------eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeE-EECCCEEEEEe
Confidence 446999999999963 358999 99999999999999999999999999999999999996 6643 68999
Q ss_pred cCCC--CCC-CCCHHHHhcc-CCcCCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHHccCCC
Q 000720 665 PQSS--WIQ-TGTIRENILF-GKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSD 740 (1333)
Q Consensus 665 ~Q~~--~i~-~~Tv~enI~~-g~~~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ 740 (1333)
+|++ .+. ..|+.+++.. .........+++++.+++..+ ....++.+||||||||++||||++++|+
T Consensus 381 ~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~----------~~~~~~~~LSgGekqRl~La~~l~~~p~ 450 (638)
T PRK10636 381 AQHQLEFLRADESPLQHLARLAPQELEQKLRDYLGGFGFQGD----------KVTEETRRFSGGEKARLVLALIVWQRPN 450 (638)
T ss_pred cCcchhhCCccchHHHHHHHhCchhhHHHHHHHHHHcCCChh----------HhcCchhhCCHHHHHHHHHHHHHhcCCC
Confidence 9975 232 4588888742 111122233444444443211 2235678999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeCCeEE-EccChHHHHh
Q 000720 741 VYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIE-QSGKYEDLIA 808 (1333)
Q Consensus 741 illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~-~~g~~~~l~~ 808 (1333)
++||||||++||+.+...+.+ ++... +.|||+||||++++.. ||+|++|++|+++ +.|+++++..
T Consensus 451 lLlLDEPt~~LD~~~~~~l~~-~L~~~--~gtvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 517 (638)
T PRK10636 451 LLLLDEPTNHLDLDMRQALTE-ALIDF--EGALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDYQQ 517 (638)
T ss_pred EEEEcCCCCCCCHHHHHHHHH-HHHHc--CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHHHH
Confidence 999999999999999887765 44444 3599999999999865 9999999999997 8899988743
No 372
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.97 E-value=9.2e-30 Score=277.35 Aligned_cols=201 Identities=26% Similarity=0.345 Sum_probs=158.7
Q ss_pred cEEEeeeEEEcCCcccccCCC--cccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECCeEEEEcC
Q 000720 590 AIDIEAGEYAWDAREENFKKP--TIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQ 666 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~--~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g~iayv~Q 666 (1333)
.++++|.+..|+.... +... ...++| ||+|++||.++|+|+|||||||+-++|+|+++|++|++ .++|+...
T Consensus 4 ll~v~~l~k~f~~~~~-~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i-~f~g~~i~--- 78 (268)
T COG4608 4 LLEVKNLKKYFPVGKG-FGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEI-LFEGKDIT--- 78 (268)
T ss_pred eEEEeccEEEEecccc-cCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceE-EEcCcchh---
Confidence 4778888888876421 1122 356788 99999999999999999999999999999999999997 66665310
Q ss_pred CCCCCCCCHHHHhccCCcCCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeC
Q 000720 667 SSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDD 746 (1333)
Q Consensus 667 ~~~i~~~Tv~enI~~g~~~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDE 746 (1333)
..+ .....+++.+.++..++..+. ..+.+.+|||||||||+|||||.-+|+++++||
T Consensus 79 -----~~~--------~~~~~~~v~elL~~Vgl~~~~----------~~ryPhelSGGQrQRi~IARALal~P~liV~DE 135 (268)
T COG4608 79 -----KLS--------KEERRERVLELLEKVGLPEEF----------LYRYPHELSGGQRQRIGIARALALNPKLIVADE 135 (268)
T ss_pred -----hcc--------hhHHHHHHHHHHHHhCCCHHH----------hhcCCcccCchhhhhHHHHHHHhhCCcEEEecC
Confidence 000 112234566777777765543 236788999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHH-hCCCeEEEecCchhhhhc-CCEEEEEeCCeEEEccChHHHHhhcchHHHHHH
Q 000720 747 PFSAVDAHTGTHLFKQCLMGL-LSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDLIADQNSELVRQM 818 (1333)
Q Consensus 747 P~saLD~~~~~~l~~~~~~~~-~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~ 818 (1333)
|+|+||..++.++.+.+.... ..|-|.+++|||++.+.+ ||+|.||..|+|++.|+.+++..++...+.+.+
T Consensus 136 pvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g~~~~~~~~p~HpYTk~L 209 (268)
T COG4608 136 PVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFSNPLHPYTKAL 209 (268)
T ss_pred chhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeEecCHHHHhhCCCCHHHHHH
Confidence 999999999998876443322 247899999999999987 999999999999999999999986655555433
No 373
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.97 E-value=5.1e-30 Score=317.90 Aligned_cols=195 Identities=19% Similarity=0.344 Sum_probs=153.0
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC---------
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g--------- 659 (1333)
.++++|++. ..+++ ||++++||+++|+||||||||||+++|+|+.+|++|++ .++|
T Consensus 268 ~l~~~~l~~-------------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i-~~~g~~i~~~~~~ 333 (510)
T PRK15439 268 VLTVEDLTG-------------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRI-MLNGKEINALSTA 333 (510)
T ss_pred eEEEeCCCC-------------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEE-EECCEECCCCCHH
Confidence 588888762 13888 99999999999999999999999999999999999986 6554
Q ss_pred -----eEEEEcCCC----CCCCCCHHHHhccCC----cC--CHH----HHHHHHHHcccchHHHhhcCCCccccCCCCCC
Q 000720 660 -----KKAYVPQSS----WIQTGTIRENILFGK----DM--RQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1333)
Q Consensus 660 -----~iayv~Q~~----~i~~~Tv~enI~~g~----~~--~~~----~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~ 720 (1333)
.++|+||++ ...+.|+.||+.... .. ... ..++.++.+++. ....++++.+
T Consensus 334 ~~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~----------~~~~~~~~~~ 403 (510)
T PRK15439 334 QRLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIK----------FNHAEQAART 403 (510)
T ss_pred HHHhCCcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCC----------CCCccCcccc
Confidence 379999985 234569999985321 11 111 111222222211 0234577889
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeCCeEEE
Q 000720 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQ 799 (1333)
Q Consensus 721 LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~ 799 (1333)
||||||||++||||++.+|+++||||||++||+.+.+.+.+.+.+...+++|+|++|||++++.. ||++++|++|+++.
T Consensus 404 LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~ 483 (510)
T PRK15439 404 LSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEISG 483 (510)
T ss_pred CCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999888876544433458999999999999865 99999999999999
Q ss_pred ccChHHHHh
Q 000720 800 SGKYEDLIA 808 (1333)
Q Consensus 800 ~g~~~~l~~ 808 (1333)
.|+.+++..
T Consensus 484 ~~~~~~~~~ 492 (510)
T PRK15439 484 ALTGAAINV 492 (510)
T ss_pred EEccccCCH
Confidence 998877653
No 374
>PRK13409 putative ATPase RIL; Provisional
Probab=99.96 E-value=1.5e-29 Score=315.50 Aligned_cols=192 Identities=20% Similarity=0.309 Sum_probs=155.5
Q ss_pred ccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECCeEEEEcCC
Q 000720 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQS 667 (1333)
Q Consensus 589 ~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g~iayv~Q~ 667 (1333)
..++++|++++|+. ..|++ |+++++||+++|+||||||||||+++|+|+++|++|++ .++-+++|+||+
T Consensus 339 ~~l~~~~ls~~~~~---------~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I-~~~~~i~y~~Q~ 408 (590)
T PRK13409 339 TLVEYPDLTKKLGD---------FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEV-DPELKISYKPQY 408 (590)
T ss_pred eEEEEcceEEEECC---------EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE-EEeeeEEEeccc
Confidence 46899999998853 23888 99999999999999999999999999999999999986 666679999999
Q ss_pred CCC-CCCCHHHHhccCCc-CC-HHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHHccCCCEEEE
Q 000720 668 SWI-QTGTIRENILFGKD-MR-QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIF 744 (1333)
Q Consensus 668 ~~i-~~~Tv~enI~~g~~-~~-~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illL 744 (1333)
+.. ++.||+||+.++.. +. ....+++++..++.+ ..+..+.+|||||||||+|||||+++|++|||
T Consensus 409 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~~-----------~~~~~~~~LSGGe~QRvaiAraL~~~p~llLL 477 (590)
T PRK13409 409 IKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQLER-----------LLDKNVKDLSGGELQRVAIAACLSRDADLYLL 477 (590)
T ss_pred ccCCCCCcHHHHHHHHhhhcChHHHHHHHHHHCCCHH-----------HHhCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 754 56799999987532 11 222344455544432 23467789999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEecCchhhhhc-CCEEEEEeCCeEEEccC
Q 000720 745 DDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGK 802 (1333)
Q Consensus 745 DEP~saLD~~~~~~l~~~~~~~~~-~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~~g~ 802 (1333)
||||++||+.++..+.+.+.+... .++|+|+||||++++.. ||++++|++ ++...|+
T Consensus 478 DEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~~-~~~~~g~ 536 (590)
T PRK13409 478 DEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFEG-EPGKHGH 536 (590)
T ss_pred eCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcC-cceeeee
Confidence 999999999998887764433333 37899999999999865 999999965 7776666
No 375
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.96 E-value=1.8e-29 Score=267.46 Aligned_cols=151 Identities=23% Similarity=0.310 Sum_probs=126.5
Q ss_pred eeeEEEcCCcccccCCCcccccCCeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC-eEEEEcCCCCCCC
Q 000720 594 EAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-KKAYVPQSSWIQT 672 (1333)
Q Consensus 594 ~~~~fsw~~~~~~~~~~~~~L~~nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g-~iayv~Q~~~i~~ 672 (1333)
.|++++|.. ...+++++++++||+++|+||||||||||+++|+|+++|++|++ .++| .++|++|++.
T Consensus 4 ~~l~~~~~~--------~~~l~~~~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i-~~~g~~i~~~~q~~~--- 71 (177)
T cd03222 4 PDCVKRYGV--------FFLLVELGVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDND-EWDGITPVYKPQYID--- 71 (177)
T ss_pred CCeEEEECC--------EEEEccCcEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEE-EECCEEEEEEcccCC---
Confidence 356666643 24566678999999999999999999999999999999999996 7877 4899988642
Q ss_pred CCHHHHhccCCcCCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCC
Q 000720 673 GTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVD 752 (1333)
Q Consensus 673 ~Tv~enI~~g~~~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD 752 (1333)
||||||||++||||++.+|++++|||||++||
T Consensus 72 ------------------------------------------------LSgGq~qrv~laral~~~p~lllLDEPts~LD 103 (177)
T cd03222 72 ------------------------------------------------LSGGELQRVAIAAALLRNATFYLFDEPSAYLD 103 (177)
T ss_pred ------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEECCcccCC
Confidence 99999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCC-CeEEEecCchhhhhc-CCEEEEEeCCeEEEc--cChH
Q 000720 753 AHTGTHLFKQCLMGLLSQ-KTVLYTTHQLEFLDA-ADLVLVMKDGKIEQS--GKYE 804 (1333)
Q Consensus 753 ~~~~~~l~~~~~~~~~~~-~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~~--g~~~ 804 (1333)
+.+.+.+.+.+.+...++ +|+|++||+++++.. ||++++|+++-.+.+ |.+.
T Consensus 104 ~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~~~~~~~~~~~~~ 159 (177)
T cd03222 104 IEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFEGEPGVYGIASQPK 159 (177)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHhCCEEEEEcCCCccceeccCCc
Confidence 999887776544433454 899999999999875 999999998765533 4444
No 376
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.96 E-value=5.2e-29 Score=277.64 Aligned_cols=217 Identities=26% Similarity=0.400 Sum_probs=170.0
Q ss_pred CccEEEeeeEEEcCCcccccC---CCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC----
Q 000720 588 DVAIDIEAGEYAWDAREENFK---KPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---- 659 (1333)
Q Consensus 588 ~~~I~i~~~~fsw~~~~~~~~---~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g---- 659 (1333)
...++.+|+...|+-+..-+. ......++ |+++++||.++|||++|||||||-.+|++++++. |.+ .+.|
T Consensus 274 ~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I-~F~G~~i~ 351 (534)
T COG4172 274 PVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEI-RFDGQDID 351 (534)
T ss_pred CceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceE-EECCcccc
Confidence 345777888877765411111 11234667 9999999999999999999999999999999876 876 6555
Q ss_pred ------------eEEEEcCCCC---CCCCCHHHHhccCCcC------CHHHHHHH---HHHcccchHHHhhcCCCccccC
Q 000720 660 ------------KKAYVPQSSW---IQTGTIRENILFGKDM------RQSFYEEV---LEGCALNQDIEMWADGDLSVVG 715 (1333)
Q Consensus 660 ------------~iayv~Q~~~---i~~~Tv~enI~~g~~~------~~~~~~~v---~~~~~l~~d~~~~~~g~~t~ig 715 (1333)
++-.|+|||+ -+..||.+-|.-|... +.++.+++ ++..+|+. ...+
T Consensus 352 ~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp----------~~r~ 421 (534)
T COG4172 352 GLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDP----------ATRN 421 (534)
T ss_pred ccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCCh----------hHhh
Confidence 3578999996 2567999999766432 23444444 34444433 2335
Q ss_pred CCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH--hCCCeEEEecCchhhhhc-CCEEEEE
Q 000720 716 ERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL--LSQKTVLYTTHQLEFLDA-ADLVLVM 792 (1333)
Q Consensus 716 ~~g~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~--~~~~TvIlvtH~~~~l~~-aD~i~vl 792 (1333)
+.+.+.||||||||+||||+.-+|++++|||||||||..++.++.+. ++.+ +.+-+-+++|||+..+.. ||+|+||
T Consensus 422 RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~L-Lr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm 500 (534)
T COG4172 422 RYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDL-LRDLQQKHGLSYLFISHDLAVVRALCHRVIVM 500 (534)
T ss_pred cCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHH-HHHHHHHhCCeEEEEeccHHHHHHhhceEEEE
Confidence 77899999999999999999999999999999999999999999874 4433 346799999999999987 9999999
Q ss_pred eCCeEEEccChHHHHhhcchHHHHH
Q 000720 793 KDGKIEQSGKYEDLIADQNSELVRQ 817 (1333)
Q Consensus 793 ~~G~i~~~g~~~~l~~~~~~~~~~~ 817 (1333)
++|+|+++|+.+++++++..++.+.
T Consensus 501 ~~GkiVE~G~~~~if~~P~~~YT~~ 525 (534)
T COG4172 501 RDGKIVEQGPTEAVFANPQHEYTRA 525 (534)
T ss_pred eCCEEeeeCCHHHHhcCCCcHHHHH
Confidence 9999999999999998776666553
No 377
>PLN03073 ABC transporter F family; Provisional
Probab=99.96 E-value=3.3e-29 Score=317.55 Aligned_cols=197 Identities=21% Similarity=0.347 Sum_probs=156.9
Q ss_pred ccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC--eEEEEc
Q 000720 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--KKAYVP 665 (1333)
Q Consensus 589 ~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g--~iayv~ 665 (1333)
..++++|++++|+.+ .+++++ ||+|++|++++|+|||||||||||++|+|+++|++|++ .+++ ++||++
T Consensus 507 ~~L~~~~ls~~y~~~-------~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I-~~~~~~~igyv~ 578 (718)
T PLN03073 507 PIISFSDASFGYPGG-------PLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTV-FRSAKVRMAVFS 578 (718)
T ss_pred ceEEEEeeEEEeCCC-------CeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceE-EECCceeEEEEe
Confidence 469999999999643 357999 99999999999999999999999999999999999986 6554 589999
Q ss_pred CCCCCCCCCHHHHhccC-----CcCCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHHccCCC
Q 000720 666 QSSWIQTGTIRENILFG-----KDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSD 740 (1333)
Q Consensus 666 Q~~~i~~~Tv~enI~~g-----~~~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ 740 (1333)
|++. ...++.+|.... ....+++.+++++.+++..+. ...++.+||||||||++||||++.+|+
T Consensus 579 Q~~~-~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~----------~~~~~~~LSgGqkqRvaLAraL~~~p~ 647 (718)
T PLN03073 579 QHHV-DGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNL----------ALQPMYTLSGGQKSRVAFAKITFKKPH 647 (718)
T ss_pred cccc-ccCCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChHH----------hcCCccccCHHHHHHHHHHHHHhcCCC
Confidence 9863 334555553321 112344555566666554221 235678999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeCCeEE-EccChHHHH
Q 000720 741 VYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIE-QSGKYEDLI 807 (1333)
Q Consensus 741 illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~-~~g~~~~l~ 807 (1333)
++||||||++||+.+.+.+.+.+ ... +.|+|+||||++++.. ||++++|++|+++ ..|+++++.
T Consensus 648 lLLLDEPT~~LD~~s~~~l~~~L-~~~--~gtvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~~~~ 713 (718)
T PLN03073 648 ILLLDEPSNHLDLDAVEALIQGL-VLF--QGGVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDYK 713 (718)
T ss_pred EEEEcCCCCCCCHHHHHHHHHHH-HHc--CCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHHH
Confidence 99999999999999988776543 222 3599999999999875 9999999999998 788887764
No 378
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.96 E-value=3.8e-29 Score=317.18 Aligned_cols=199 Identities=27% Similarity=0.407 Sum_probs=157.7
Q ss_pred CccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC--eEEEE
Q 000720 588 DVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--KKAYV 664 (1333)
Q Consensus 588 ~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g--~iayv 664 (1333)
+..++++|++++|+. .+++++ ||+|++|++++|+||||||||||+++|+|+++|++|++ .+.. ++||+
T Consensus 317 ~~~l~~~~l~~~~~~--------~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i-~~~~~~~i~y~ 387 (635)
T PRK11147 317 KIVFEMENVNYQIDG--------KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRI-HCGTKLEVAYF 387 (635)
T ss_pred CceEEEeeeEEEECC--------eEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEE-EECCCcEEEEE
Confidence 346999999999963 358999 99999999999999999999999999999999999987 5643 58999
Q ss_pred cCCC--CCCCCCHHHHhccCCc-C--C--HHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHHcc
Q 000720 665 PQSS--WIQTGTIRENILFGKD-M--R--QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYS 737 (1333)
Q Consensus 665 ~Q~~--~i~~~Tv~enI~~g~~-~--~--~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~ 737 (1333)
+|++ ...+.||.||+.++.. . + .....+.++..++..+ ....++.+||||||||++||||++.
T Consensus 388 ~q~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGekqRl~la~al~~ 457 (635)
T PRK11147 388 DQHRAELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPK----------RAMTPVKALSGGERNRLLLARLFLK 457 (635)
T ss_pred eCcccccCCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCHH----------HHhChhhhCCHHHHHHHHHHHHHhc
Confidence 9985 3345699999987532 1 1 1112223333332211 1335678999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEe-CCeEE-EccChHHHHh
Q 000720 738 NSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMK-DGKIE-QSGKYEDLIA 808 (1333)
Q Consensus 738 ~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~-~G~i~-~~g~~~~l~~ 808 (1333)
+|+++||||||++||+.+.+.+.+ +++.. +.|||+||||.+++.. ||+|++|+ +|++. +.|+|+++..
T Consensus 458 ~p~lLlLDEPt~~LD~~~~~~l~~-~l~~~--~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~~y~~ 528 (635)
T PRK11147 458 PSNLLILDEPTNDLDVETLELLEE-LLDSY--QGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHDARQ 528 (635)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHH-HHHhC--CCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHHHHHH
Confidence 999999999999999998776554 44433 4699999999999865 99999998 89986 5789988753
No 379
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.96 E-value=4.9e-29 Score=316.32 Aligned_cols=201 Identities=26% Similarity=0.365 Sum_probs=163.1
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC---------
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g--------- 659 (1333)
.++++|+++.|+..+ ...+.+++ ||++++||+++|+||||||||||+++|+|+.+|++|++ .++|
T Consensus 4 ~l~~~nl~~~y~~~~----~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i-~~~g~~i~~~~~~ 78 (648)
T PRK10535 4 LLELKDIRRSYPSGE----EQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTY-RVAGQDVATLDAD 78 (648)
T ss_pred EEEEeeEEEEeCCCC----CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEE-EECCEEcCcCCHH
Confidence 488999999996430 12468999 99999999999999999999999999999999999986 5543
Q ss_pred --------eEEEEcCCCCCCC-CCHHHHhccCCcC---C-H---HHHHHHHHHcccchHHHhhcCCCccccCCCCCCCCh
Q 000720 660 --------KKAYVPQSSWIQT-GTIRENILFGKDM---R-Q---SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSG 723 (1333)
Q Consensus 660 --------~iayv~Q~~~i~~-~Tv~enI~~g~~~---~-~---~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSG 723 (1333)
.++|++|++.++. .|+.||+.++... . . ++..+.++.+++ ....+.++.+|||
T Consensus 79 ~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl-----------~~~~~~~~~~LS~ 147 (648)
T PRK10535 79 ALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGL-----------EDRVEYQPSQLSG 147 (648)
T ss_pred HHHHHHhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCC-----------hhhhcCCcccCCH
Confidence 4799999998764 6999999864311 1 1 112222333322 2334567789999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCeEEEecCchhhhhcCCEEEEEeCCeEEEccC
Q 000720 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-LSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGK 802 (1333)
Q Consensus 724 GQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~-~~~~TvIlvtH~~~~l~~aD~i~vl~~G~i~~~g~ 802 (1333)
|||||++||||++++|++++|||||++||+.+.+.+.+. ++.+ .+++|+|++||+++.++.||++++|++|++++.|+
T Consensus 148 Gq~qrv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~l-l~~l~~~g~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~ 226 (648)
T PRK10535 148 GQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAI-LHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVRNPP 226 (648)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHH-HHHHHhcCCEEEEECCCHHHHHhCCEEEEEECCEEEeecC
Confidence 999999999999999999999999999999998877764 4444 35899999999999888899999999999999999
Q ss_pred hHHHH
Q 000720 803 YEDLI 807 (1333)
Q Consensus 803 ~~~l~ 807 (1333)
.++..
T Consensus 227 ~~~~~ 231 (648)
T PRK10535 227 AQEKV 231 (648)
T ss_pred ccccc
Confidence 88774
No 380
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.96 E-value=2.8e-29 Score=310.58 Aligned_cols=193 Identities=22% Similarity=0.327 Sum_probs=149.2
Q ss_pred ccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcC-CCCcEEEECC-------
Q 000720 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR-ISGAAIKVHG------- 659 (1333)
Q Consensus 589 ~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~-~~G~~i~~~g------- 659 (1333)
..++++|++++|+.. .++++ ||++++||+++|+||||||||||+++|+|+.++ ++|++ .++|
T Consensus 259 ~~l~~~~l~~~~~~~--------~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i-~~~g~~~~~~~ 329 (490)
T PRK10938 259 PRIVLNNGVVSYNDR--------PILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDL-TLFGRRRGSGE 329 (490)
T ss_pred ceEEEeceEEEECCe--------eEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeE-EEecccCCCCC
Confidence 469999999999632 57999 999999999999999999999999999998875 68876 5443
Q ss_pred -------eEEEEcCCCCC-C--CCCHHHHhccCCc--------CCH---HHHHHHHHHcccchHHHhhcCCCccccCCCC
Q 000720 660 -------KKAYVPQSSWI-Q--TGTIRENILFGKD--------MRQ---SFYEEVLEGCALNQDIEMWADGDLSVVGERG 718 (1333)
Q Consensus 660 -------~iayv~Q~~~i-~--~~Tv~enI~~g~~--------~~~---~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g 718 (1333)
+++|++|++.+ + ..++++++.++.. ... ++.++.++.+++..+ ....++
T Consensus 330 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~ 399 (490)
T PRK10938 330 TIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKR----------TADAPF 399 (490)
T ss_pred CHHHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchh----------hccCch
Confidence 37999998754 2 2477777754311 011 122333443333210 234577
Q ss_pred CCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC-eEEEecCchhhhhc--CCEEEEEeCC
Q 000720 719 INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK-TVLYTTHQLEFLDA--ADLVLVMKDG 795 (1333)
Q Consensus 719 ~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~-TvIlvtH~~~~l~~--aD~i~vl~~G 795 (1333)
.+||||||||++||||++.+|+++||||||++||+++.+.+.+.+.+...+++ |||++|||++++.. ||++++|++|
T Consensus 400 ~~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G 479 (490)
T PRK10938 400 HSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDG 479 (490)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecCC
Confidence 89999999999999999999999999999999999998888765444334454 69999999999863 8999999999
Q ss_pred eEEEc
Q 000720 796 KIEQS 800 (1333)
Q Consensus 796 ~i~~~ 800 (1333)
+|++.
T Consensus 480 ~i~~~ 484 (490)
T PRK10938 480 DIYRY 484 (490)
T ss_pred ceEEe
Confidence 98764
No 381
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.96 E-value=4.5e-29 Score=308.67 Aligned_cols=201 Identities=18% Similarity=0.268 Sum_probs=152.0
Q ss_pred ccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECCe-------
Q 000720 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK------- 660 (1333)
Q Consensus 589 ~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g~------- 660 (1333)
..|+++|+++.+ .+.+++ ||++++||+++|+||||||||||+++|+|+.+|++|++ .++|+
T Consensus 249 ~~i~~~~l~~~~----------~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i-~~~g~~i~~~~~ 317 (491)
T PRK10982 249 VILEVRNLTSLR----------QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTI-TLHGKKINNHNA 317 (491)
T ss_pred cEEEEeCccccc----------CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEE-EECCEECCCCCH
Confidence 368999998862 147899 99999999999999999999999999999999999986 66551
Q ss_pred -------EEEEcCCCC----CCCCCHHHHhccC-----Cc----CCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCC
Q 000720 661 -------KAYVPQSSW----IQTGTIRENILFG-----KD----MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1333)
Q Consensus 661 -------iayv~Q~~~----i~~~Tv~enI~~g-----~~----~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~ 720 (1333)
++|++|++- ..+.|+.+|+.+. .. .+....++. ..+-++.+..++ ...+.++.+
T Consensus 318 ~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~~l~~-~~~~~~~~~ 391 (491)
T PRK10982 318 NEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSD-----TQWVIDSMRVKT-PGHRTQIGS 391 (491)
T ss_pred HHHHHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHH-----HHHHHHhcCccC-CCccccccc
Confidence 789999852 3456777774322 11 011111110 011122221111 124578899
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeCCeEEE
Q 000720 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQ 799 (1333)
Q Consensus 721 LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~ 799 (1333)
||||||||++||||++.+|+|+||||||+|||+.+.+.+++.+.....+++|||++|||++++.. ||++++|++|+++.
T Consensus 392 LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~ 471 (491)
T PRK10982 392 LSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVAG 471 (491)
T ss_pred CCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999988877543334468999999999999864 99999999999998
Q ss_pred ccChHHH
Q 000720 800 SGKYEDL 806 (1333)
Q Consensus 800 ~g~~~~l 806 (1333)
.++.+++
T Consensus 472 ~~~~~~~ 478 (491)
T PRK10982 472 IVDTKTT 478 (491)
T ss_pred EEccccC
Confidence 7766433
No 382
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.96 E-value=2.3e-29 Score=267.90 Aligned_cols=199 Identities=24% Similarity=0.351 Sum_probs=155.4
Q ss_pred CCccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEEC-------
Q 000720 587 SDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVH------- 658 (1333)
Q Consensus 587 ~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~------- 658 (1333)
.+..|+++|+++.+.. +++|++ +.+|++||..+|+|||||||||||+.++|+.+|.+|.+ .+.
T Consensus 28 ~~~li~l~~v~v~r~g--------k~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~-~~~G~~~G~~ 98 (257)
T COG1119 28 NEPLIELKNVSVRRNG--------KKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDV-TLLGRRFGKG 98 (257)
T ss_pred CcceEEecceEEEECC--------EeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCce-eeeeeeccCC
Confidence 4457999999999965 479999 99999999999999999999999999999999998875 332
Q ss_pred -------CeEEEEcCC---CCCCCCCHHHHhccCC---------cCCHHHHHHHHHHcccchHHHhhcCCCccccCCCCC
Q 000720 659 -------GKKAYVPQS---SWIQTGTIRENILFGK---------DMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGI 719 (1333)
Q Consensus 659 -------g~iayv~Q~---~~i~~~Tv~enI~~g~---------~~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~ 719 (1333)
.+||||+-+ -...+.+++|-|+-|. +++++.++++.. +. +. .|.....++.-.
T Consensus 99 ~~~~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~---ll---e~--~g~~~la~r~~~ 170 (257)
T COG1119 99 ETIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQW---LL---EL--LGAKHLADRPFG 170 (257)
T ss_pred cchHHHHHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHH---HH---HH--cchhhhccCchh
Confidence 247898853 2233568999888652 223333322211 11 11 122234557788
Q ss_pred CCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC--CCeEEEecCchhhhhc-CCEEEEEeCCe
Q 000720 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTHQLEFLDA-ADLVLVMKDGK 796 (1333)
Q Consensus 720 ~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~--~~TvIlvtH~~~~l~~-aD~i~vl~~G~ 796 (1333)
+||-|||||+-||||++.+|.++|||||++|||...++.+.+.+...... +.|+|+|||+.+.++. .++++.+++|+
T Consensus 171 ~LS~Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~g~ 250 (257)
T COG1119 171 SLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGE 250 (257)
T ss_pred hcCHhHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEEEeeCCc
Confidence 99999999999999999999999999999999999987777655444333 5799999999999865 79999999999
Q ss_pred EEEccC
Q 000720 797 IEQSGK 802 (1333)
Q Consensus 797 i~~~g~ 802 (1333)
++.+|.
T Consensus 251 v~~~g~ 256 (257)
T COG1119 251 VVAQGK 256 (257)
T ss_pred eeeccc
Confidence 998874
No 383
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.96 E-value=5.5e-29 Score=280.24 Aligned_cols=186 Identities=22% Similarity=0.271 Sum_probs=140.7
Q ss_pred eeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEE----------EECC----
Q 000720 595 AGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAI----------KVHG---- 659 (1333)
Q Consensus 595 ~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i----------~~~g---- 659 (1333)
+++++|+.. .+.+++ + .+++||+++|+||||||||||+++|+|+++|++|++. .++|
T Consensus 5 ~~~~~y~~~-------~~~l~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~ 76 (255)
T cd03236 5 EPVHRYGPN-------SFKLHRLP-VPREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQ 76 (255)
T ss_pred CcceeecCc-------chhhhcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhh
Confidence 567777532 357888 8 4999999999999999999999999999999999862 1222
Q ss_pred -----------eEEEEcCCCCCCCCCHHHHhccCCcC--CHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHH
Q 000720 660 -----------KKAYVPQSSWIQTGTIRENILFGKDM--RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQK 726 (1333)
Q Consensus 660 -----------~iayv~Q~~~i~~~Tv~enI~~g~~~--~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQk 726 (1333)
.++|++|++..+..++.+|+.+.... .++...++++.+++. ...+.++.+||||||
T Consensus 77 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~gl~-----------~~~~~~~~~LS~G~~ 145 (255)
T cd03236 77 NYFTKLLEGDVKVIVKPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELR-----------HVLDRNIDQLSGGEL 145 (255)
T ss_pred hhhHHhhhcccceeeecchhccCchHHHHHHHHHhchhHHHHHHHHHHHHcCCc-----------hhhcCChhhCCHHHH
Confidence 25788888765555666666543211 123344444444432 233467789999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeCCeEEEc
Q 000720 727 QRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQS 800 (1333)
Q Consensus 727 qRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~~ 800 (1333)
||++||||++.+|+++||||||++||+.+.+.+.+.+.+...+++|+|++||+++.+.. ||+|++|+ |++.+.
T Consensus 146 qrv~laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~~~~~ad~i~~l~-~~~~~~ 219 (255)
T cd03236 146 QRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAVLDYLSDYIHCLY-GEPGAY 219 (255)
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEC-CCCCcc
Confidence 99999999999999999999999999999887776443333357999999999999875 99999995 556543
No 384
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.96 E-value=1.1e-28 Score=263.53 Aligned_cols=187 Identities=26% Similarity=0.333 Sum_probs=157.6
Q ss_pred CcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECCeEEEEcCCC--CCCCCCHHHHhccCCc--
Q 000720 610 PTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSS--WIQTGTIRENILFGKD-- 684 (1333)
Q Consensus 610 ~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g~iayv~Q~~--~i~~~Tv~enI~~g~~-- 684 (1333)
....|+| ||++++||.++|+|+|||||||||+.|.|.++|++|++ .++|++++...-. .-++.|.||||.+-..
T Consensus 39 ~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v-~v~G~v~~li~lg~Gf~pelTGreNi~l~~~~~ 117 (249)
T COG1134 39 EFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKV-KVTGKVAPLIELGAGFDPELTGRENIYLRGLIL 117 (249)
T ss_pred eEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceE-EEcceEehhhhcccCCCcccchHHHHHHHHHHh
Confidence 3468999 99999999999999999999999999999999999997 9999998766543 3456799999986322
Q ss_pred -----CCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHH
Q 000720 685 -----MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHL 759 (1333)
Q Consensus 685 -----~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l 759 (1333)
.-+++++++++...|.+ .++.+..++|-|++.|++.|-|...+|||||+||.++..|+.-.++-
T Consensus 118 G~~~~ei~~~~~eIieFaELG~-----------fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~ 186 (249)
T COG1134 118 GLTRKEIDEKVDEIIEFAELGD-----------FIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKC 186 (249)
T ss_pred CccHHHHHHHHHHHHHHHHHHH-----------HhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHH
Confidence 22345666666554432 23367789999999999999999999999999999999999888777
Q ss_pred HHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeCCeEEEccChHHHHh
Q 000720 760 FKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDLIA 808 (1333)
Q Consensus 760 ~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~~g~~~~l~~ 808 (1333)
.+.+.+...+++|+|+||||++.++. ||+++.|++|+|...|++++..+
T Consensus 187 ~~rl~e~~~~~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~~~G~~~~vi~ 236 (249)
T COG1134 187 LERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVIP 236 (249)
T ss_pred HHHHHHHHHcCCEEEEEECCHHHHHHhcCeeEEEeCCEEEEcCCHHHHHH
Confidence 66654544778999999999999865 99999999999999999999876
No 385
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.96 E-value=1.4e-28 Score=260.30 Aligned_cols=150 Identities=27% Similarity=0.392 Sum_probs=118.7
Q ss_pred CcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECCe--------EEEEcCCCCCCCCCHHHHhc
Q 000720 610 PTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK--------KAYVPQSSWIQTGTIRENIL 680 (1333)
Q Consensus 610 ~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g~--------iayv~Q~~~i~~~Tv~enI~ 680 (1333)
..+.+++ ||++++|++++|+|||||||||||++|++ .+|++ .+.+. ++|++|
T Consensus 7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~----~~G~v-~~~~~~~~~~~~~~~~~~q-------------- 67 (176)
T cd03238 7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY----ASGKA-RLISFLPKFSRNKLIFIDQ-------------- 67 (176)
T ss_pred eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh----cCCcE-EECCcccccccccEEEEhH--------------
Confidence 4678999 99999999999999999999999999974 57775 55443 334333
Q ss_pred cCCcCCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHHccC--CCEEEEeCCCCCCCHHHHHH
Q 000720 681 FGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSN--SDVYIFDDPFSAVDAHTGTH 758 (1333)
Q Consensus 681 ~g~~~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~--~~illLDEP~saLD~~~~~~ 758 (1333)
.+.++..++.. . ..++++.+||||||||++||||++.+ |+++||||||++||++..+.
T Consensus 68 ----------~~~l~~~~L~~---------~-~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~ 127 (176)
T cd03238 68 ----------LQFLIDVGLGY---------L-TLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQ 127 (176)
T ss_pred ----------HHHHHHcCCCc---------c-ccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHH
Confidence 22333333321 1 24567889999999999999999999 99999999999999999888
Q ss_pred HHHHHHHHHhCCCeEEEecCchhhhhcCCEEEEEeCCeEE
Q 000720 759 LFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIE 798 (1333)
Q Consensus 759 l~~~~~~~~~~~~TvIlvtH~~~~l~~aD~i~vl~~G~i~ 798 (1333)
+.+.+.+...+++|||++||+++++..||++++|++|+..
T Consensus 128 l~~~l~~~~~~g~tvIivSH~~~~~~~~d~i~~l~~g~~~ 167 (176)
T cd03238 128 LLEVIKGLIDLGNTVILIEHNLDVLSSADWIIDFGPGSGK 167 (176)
T ss_pred HHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEECCCCCC
Confidence 7765433333689999999999998889999999876543
No 386
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.96 E-value=5.7e-29 Score=257.53 Aligned_cols=187 Identities=26% Similarity=0.332 Sum_probs=152.5
Q ss_pred CCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECCe-------------EEEEcCCCC---CC
Q 000720 609 KPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK-------------KAYVPQSSW---IQ 671 (1333)
Q Consensus 609 ~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g~-------------iayv~Q~~~---i~ 671 (1333)
.+++.|.+ +++|++|+++.|+|.||||||||+++|+|.++|++|++ .++|. ++-|+|+|- -.
T Consensus 17 ~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I-~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~ 95 (263)
T COG1101 17 LEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQI-LIDGVDVTKKSVAKRANLLARVFQDPLAGTAP 95 (263)
T ss_pred hHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceE-EECceecccCCHHHHhhHHHHHhcchhhCCcc
Confidence 35678999 99999999999999999999999999999999999996 77763 477999985 45
Q ss_pred CCCHHHHhccCCcC------CH---HHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHHccCCCEE
Q 000720 672 TGTIRENILFGKDM------RQ---SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVY 742 (1333)
Q Consensus 672 ~~Tv~enI~~g~~~------~~---~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~il 742 (1333)
+.||.||+...... .. .++.+ ...+.+..++.|.+...+.+..-|||||||-++|+.|..+.|+|+
T Consensus 96 ~lTieENl~la~~Rg~~rgl~~~ln~~~~~-----~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pkiL 170 (263)
T COG1101 96 ELTIEENLALAESRGKKRGLSSALNERRRS-----SFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKIL 170 (263)
T ss_pred cccHHHHHHHHHhcCcccccchhhhHHHHH-----HHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcEE
Confidence 78999999864211 11 11111 112335566777777788889999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEecCchhh-hhcCCEEEEEeCCeEEEcc
Q 000720 743 IFDDPFSAVDAHTGTHLFKQCLMGLLS-QKTVLYTTHQLEF-LDAADLVLVMKDGKIEQSG 801 (1333)
Q Consensus 743 lLDEP~saLD~~~~~~l~~~~~~~~~~-~~TvIlvtH~~~~-l~~aD~i~vl~~G~i~~~g 801 (1333)
+|||-|+||||.++..+++.--+-..+ +-|.++|||+++. +.+-+|.++|++|+|+.+-
T Consensus 171 LLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~RlImLh~G~IvlDv 231 (263)
T COG1101 171 LLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIVLDV 231 (263)
T ss_pred EecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeEEEEeCCeEEEEc
Confidence 999999999999999888754444444 4699999999986 5789999999999998653
No 387
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.96 E-value=1.5e-28 Score=332.39 Aligned_cols=204 Identities=22% Similarity=0.347 Sum_probs=164.7
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCc---CCCCcEEEECC------
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP---RISGAAIKVHG------ 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~---~~~G~~i~~~g------ 659 (1333)
.++++|++++++.+. ..+.+|+| |+++++||+++|+|||||||||||++|+|..+ +++|++ .++|
T Consensus 759 ~l~~~nl~~~~~~~~----~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I-~i~G~~~~~~ 833 (1394)
T TIGR00956 759 IFHWRNLTYEVKIKK----EKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDR-LVNGRPLDSS 833 (1394)
T ss_pred eEEEEeeEEEecCCC----CCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEE-EECCEECChh
Confidence 478999999986431 23578999 99999999999999999999999999999987 677986 7766
Q ss_pred ---eEEEEcCCCC-CCCCCHHHHhccCCc------CCH-H---HHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHH
Q 000720 660 ---KKAYVPQSSW-IQTGTIRENILFGKD------MRQ-S---FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (1333)
Q Consensus 660 ---~iayv~Q~~~-i~~~Tv~enI~~g~~------~~~-~---~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQ 725 (1333)
.+|||+|++. ++..||+||+.|+.. ..+ + +.+++++..++. +..++.+|+.+.+|||||
T Consensus 834 ~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~-------~~~d~~v~~~~~~LSgGq 906 (1394)
T TIGR00956 834 FQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEME-------SYADAVVGVPGEGLNVEQ 906 (1394)
T ss_pred hhcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCCh-------hhCCCeeCCCCCCCCHHH
Confidence 3699999864 567899999998531 111 1 223444444432 223567788788999999
Q ss_pred HHHHHHHHHHccCCC-EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhh--hcCCEEEEEeCC-eEEEcc
Q 000720 726 KQRIQLARAVYSNSD-VYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFL--DAADLVLVMKDG-KIEQSG 801 (1333)
Q Consensus 726 kqRv~LARAl~~~~~-illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l--~~aD~i~vl~~G-~i~~~g 801 (1333)
|||++|||||+.+|+ +++|||||||||+.++..+.+.+.+...+|+|||++|||++.. +.+|++++|++| ++++.|
T Consensus 907 rqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G 986 (1394)
T TIGR00956 907 RKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFG 986 (1394)
T ss_pred hhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEEC
Confidence 999999999999997 9999999999999998888775544445789999999999863 569999999987 999999
Q ss_pred ChHH
Q 000720 802 KYED 805 (1333)
Q Consensus 802 ~~~~ 805 (1333)
+.++
T Consensus 987 ~~~~ 990 (1394)
T TIGR00956 987 DLGE 990 (1394)
T ss_pred Cccc
Confidence 8754
No 388
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.95 E-value=2.4e-25 Score=247.42 Aligned_cols=366 Identities=20% Similarity=0.242 Sum_probs=263.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCcchhHHHHhccHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 000720 940 SSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSII 1019 (1333)
Q Consensus 940 ~~i~~~~~~~~~~~~~~~~s~~L~~~ll~~il~ap~~fFd~tp~GrIlnRfs~Di~~vd~~l~~~l~~~~~~~~~~l~~i 1019 (1333)
-.+...+.......+|.+...++|.++.++++.+|+.-+++-.+||++.++++|+.+|. .--..+..+.++.+-.++++
T Consensus 61 f~~ss~is~lg~t~~gq~~I~klr~~~~~kil~tplerier~~~~rlla~L~~Dvr~IS-f~~s~lp~~~qa~il~l~s~ 139 (546)
T COG4615 61 FMVSSLISQLGLTTLGQHFIYKLRSEFIKKILDTPLERIERLGSARLLAGLTSDVRNIS-FAFSRLPELVQAIILTLGSA 139 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhcccchhhhhccccccee-ehHhhhHHHHHHHHHHHHHH
Confidence 33344455666788899999999999999999999999999999999999999999998 33445667888888899999
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhchHHHHHHHHhcchHHHHhcccHHHHHHH--HHHHH-
Q 000720 1020 ILMSQAAWQVFPLFLVILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLR--SHSLI- 1096 (1333)
Q Consensus 1020 vv~~~~~~~l~lv~ipl~~~~~~~~~~y~~~srel~rl~~~~~spl~~~~~Etl~G~~tIRaf~~e~~f~~~--~~~~~- 1096 (1333)
+.+++.+++++++.+..+++.++.+.+.++..-+-.+...+....+.++++-.++|-+..+..+...+.... +...-
T Consensus 140 aYLayLSp~mf~l~vV~ivv~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~~~~h~~~~~~~a~ 219 (546)
T COG4615 140 AYLAYLSPKMFLLTVVWIVVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAEYVHNNLYIPDAQ 219 (546)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHHHHHHhhhcCcchH
Confidence 999999999999888887777777766666555555666667778999999999999988776644333322 21111
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q 000720 1097 ---DDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLIILVTLPRSAIDPSLAGLAATYGL---NLNVLQAWVIWNLCNVE 1170 (1333)
Q Consensus 1097 ---d~~~~~~~~~~~~~~wl~~rl~ll~~~~~~~~~~~~~~~~~~~~~~g~~gl~l~y~l---~l~~~l~~~v~~~~~le 1170 (1333)
++..+.......+..|-...+-.+.++++... ...+ ..... .++++.+ -+-.++..++..+..+-
T Consensus 220 ~~r~~~~~~n~f~~la~~~~ni~l~~lIGlvf~la------l~~~-w~st~--~a~tivlvlLflr~pL~s~vgilP~l~ 290 (546)
T COG4615 220 EYRHHIIRANTFHLLAVNWSNIMLLGLIGLVFWLA------LSLG-WASTN--VAATIVLVLLFLRTPLLSAVGILPTLL 290 (546)
T ss_pred HHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH------Hhhc-cchhh--HHHHHHHHHHHHhhHHHHHHhhhhHHH
Confidence 11111222222344454433222222111111 1011 11111 2223333 33455666777777788
Q ss_pred HHhhHHHHHHHhhcCCCCCCcccCCCCCCCCCCCcccEEEEEEEEEECCCCCCccccceEEecCCcEEEEECCCCccHHH
Q 000720 1171 NKMISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKST 1250 (1333)
Q Consensus 1171 ~~~~SveRI~~~~~~p~E~~~~~~~~~~~~~wp~~G~I~f~nVsf~Y~~~~p~VLk~Is~~I~~GekVgIVGrTGSGKST 1250 (1333)
..-++..||.++..-|..+ ..+...+.|+|. .||++||.|+|.++. .-+.-||++|+.||.|=|+|.+||||||
T Consensus 291 ~AqvA~~kiakle~~~~~a--~~~~~q~~p~~~---~lelrnvrfay~~~~-FhvgPiNl~ikrGelvFliG~NGsGKST 364 (546)
T COG4615 291 TAQVAFNKIAKLELAPYKA--DFPRPQAFPDWK---TLELRNVRFAYQDNA-FHVGPINLTIKRGELVFLIGGNGSGKST 364 (546)
T ss_pred HHHHHHHHHHHhhcCCccc--cCCCCCcCCccc---ceeeeeeeeccCccc-ceecceeeEEecCcEEEEECCCCCcHHH
Confidence 8889999999876532211 112222333454 799999999998764 3577899999999999999999999999
Q ss_pred HHHHHhcccCCCCCeEEEcCEeCCCCChHHHhhcCeEecccccccccchhhhcCCCCCCCHHHHHHHHHhCCCCc
Q 000720 1251 LIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVKISKLLTH 1325 (1333)
Q Consensus 1251 Li~lL~Rl~ep~~G~I~IDGvdI~~i~l~~LRs~isiVpQdp~LF~GTIR~NLdp~~~~sDeeI~~aL~~~~L~~ 1325 (1333)
++++|.|+|.|++|+|++||.+++.=++++.|+-+|-|.-|-+||+.++ -|-+..+.+.|..-|++-.|..
T Consensus 365 ~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll----~~e~~as~q~i~~~LqrLel~~ 435 (546)
T COG4615 365 LAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLL----GPEGKASPQLIEKWLQRLELAH 435 (546)
T ss_pred HHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhh----CCccCCChHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999875 3434477777777776655543
No 389
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=2e-27 Score=248.97 Aligned_cols=141 Identities=40% Similarity=0.607 Sum_probs=120.6
Q ss_pred EeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECCe-----------
Q 000720 593 IEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK----------- 660 (1333)
Q Consensus 593 i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g~----------- 660 (1333)
++|.+|+|+.. +.+++ |+++++|++++|+|+||||||||+++|.|+++|.+|++ .+++.
T Consensus 2 ~~~~~~~~~~~--------~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i-~~~~~~~~~~~~~~~~ 72 (157)
T cd00267 2 IENLSFRYGGR--------TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEI-LIDGKDIAKLPLEELR 72 (157)
T ss_pred eEEEEEEeCCe--------eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEE-EECCEEcccCCHHHHH
Confidence 67888988642 57899 99999999999999999999999999999999999986 66653
Q ss_pred --EEEEcCCCCCCCCCHHHHhccCCcCCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHHccC
Q 000720 661 --KAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSN 738 (1333)
Q Consensus 661 --iayv~Q~~~i~~~Tv~enI~~g~~~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~ 738 (1333)
++|++| ||||||||++||||++.+
T Consensus 73 ~~i~~~~q------------------------------------------------------lS~G~~~r~~l~~~l~~~ 98 (157)
T cd00267 73 RRIGYVPQ------------------------------------------------------LSGGQRQRVALARALLLN 98 (157)
T ss_pred hceEEEee------------------------------------------------------CCHHHHHHHHHHHHHhcC
Confidence 222222 999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeCCe
Q 000720 739 SDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGK 796 (1333)
Q Consensus 739 ~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~ 796 (1333)
|++++|||||++||+.+...+.+.+.....+++|++++||++++++. ||++++|++|+
T Consensus 99 ~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 99 PDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157 (157)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCcC
Confidence 99999999999999999887766443333346899999999999877 79999999875
No 390
>PLN03140 ABC transporter G family member; Provisional
Probab=99.95 E-value=6.2e-27 Score=315.34 Aligned_cols=208 Identities=25% Similarity=0.396 Sum_probs=160.1
Q ss_pred cEEEeeeEEEcCCcccc-----cCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcC--CCCcEEEECC--
Q 000720 590 AIDIEAGEYAWDAREEN-----FKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR--ISGAAIKVHG-- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~-----~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~--~~G~~i~~~g-- 659 (1333)
.+.++|++++-+...+. ......+|+| |+++++|++++|+|||||||||||++|+|..++ .+|++ .++|
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I-~inG~~ 945 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDI-RISGFP 945 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceE-EECCcc
Confidence 57888888877532110 0123468999 999999999999999999999999999998763 67875 6665
Q ss_pred --------eEEEEcCCCC-CCCCCHHHHhccCCc------CCH-H---HHHHHHHHcccchHHHhhcCCCccccCCCC-C
Q 000720 660 --------KKAYVPQSSW-IQTGTIRENILFGKD------MRQ-S---FYEEVLEGCALNQDIEMWADGDLSVVGERG-I 719 (1333)
Q Consensus 660 --------~iayv~Q~~~-i~~~Tv~enI~~g~~------~~~-~---~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g-~ 719 (1333)
.+|||+|++. .++.||+||+.|... .+. + +.+++++..++.+ -.++.+|..+ .
T Consensus 946 ~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~-------~~~~~vg~~~~~ 1018 (1470)
T PLN03140 946 KKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDN-------LKDAIVGLPGVT 1018 (1470)
T ss_pred CChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChh-------HhCCccCCCCCC
Confidence 3699999975 456799999987521 121 1 2344555554432 1234555443 6
Q ss_pred CCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhh--hhcCCEEEEEeC-Ce
Q 000720 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEF--LDAADLVLVMKD-GK 796 (1333)
Q Consensus 720 ~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~--l~~aD~i~vl~~-G~ 796 (1333)
.||||||||++|||||+.+|++++|||||||||++++..+.+.+.+...+|+|||++|||++. .+.+|++++|++ |+
T Consensus 1019 ~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~ 1098 (1470)
T PLN03140 1019 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQ 1098 (1470)
T ss_pred CcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCE
Confidence 899999999999999999999999999999999999988887655544568999999999984 466999999986 89
Q ss_pred EEEccChHH
Q 000720 797 IEQSGKYED 805 (1333)
Q Consensus 797 i~~~g~~~~ 805 (1333)
+++.|+..+
T Consensus 1099 ~v~~G~~~~ 1107 (1470)
T PLN03140 1099 VIYSGPLGR 1107 (1470)
T ss_pred EEEECCccc
Confidence 999998653
No 391
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.95 E-value=3.2e-27 Score=230.40 Aligned_cols=182 Identities=23% Similarity=0.354 Sum_probs=139.7
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCC---CCcEEEECC-------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRI---SGAAIKVHG------- 659 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~---~G~~i~~~g------- 659 (1333)
..++|++..-+. ...|.+ |++|.+||++-+.||+|||||||+.-+.|.+.+. +|++ .+++
T Consensus 3 l~l~nvsl~l~g--------~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~-~l~~~~l~~lP 73 (213)
T COG4136 3 LCLKNVSLRLPG--------SCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGEL-WLNEQRLDMLP 73 (213)
T ss_pred eeeeeeeecCCC--------ceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEE-EECCeeccccc
Confidence 345677655443 357888 9999999999999999999999999999988753 5654 5543
Q ss_pred ----eEEEEcCCCCCCC-CCHHHHhccCCcCCH---HH---HHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHH
Q 000720 660 ----KKAYVPQSSWIQT-GTIRENILFGKDMRQ---SF---YEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQR 728 (1333)
Q Consensus 660 ----~iayv~Q~~~i~~-~Tv~enI~~g~~~~~---~~---~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqR 728 (1333)
++|..+|++|+|. .+|.+|++|..+.+- .+ .+..++..+|...+ .+.+.+||||||.|
T Consensus 74 a~qRq~GiLFQD~lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f-----------~~dP~tlSGGQrAR 142 (213)
T COG4136 74 AAQRQIGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAF-----------HQDPATLSGGQRAR 142 (213)
T ss_pred hhhhheeeeecccccccccccccceEEecCcccccHHHHhhHHHHHHHhccchhh-----------hcChhhcCcchHHH
Confidence 5799999999875 599999999765431 11 12233444443322 34567999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEecCchhhhhcCCEEEEE
Q 000720 729 IQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDAADLVLVM 792 (1333)
Q Consensus 729 v~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~-~~~TvIlvtH~~~~l~~aD~i~vl 792 (1333)
|+|-|+|...|+.++||||||.||..-+.+.-+-++.... .|..+|+||||.+.++.-.||+-|
T Consensus 143 vaL~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~DvpagsrVie~ 207 (213)
T COG4136 143 VALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQDVPAGSRVIEM 207 (213)
T ss_pred HHHHHHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCCCCCeeeee
Confidence 9999999999999999999999999887665554554443 478999999999988866666655
No 392
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.94 E-value=4.6e-27 Score=239.53 Aligned_cols=200 Identities=21% Similarity=0.336 Sum_probs=161.2
Q ss_pred ccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECCe-------
Q 000720 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK------- 660 (1333)
Q Consensus 589 ~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g~------- 660 (1333)
...+++|++.+++.= ..+++ +|++.+||+-+|+||||+||||++..|.|..+|+.|++ .++|.
T Consensus 4 ~iL~~~~vsVsF~GF--------~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v-~f~g~~dl~~~~ 74 (249)
T COG4674 4 IILYLDGVSVSFGGF--------KALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEV-LFDGDTDLTKLP 74 (249)
T ss_pred ceEEEeceEEEEcce--------eeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceE-EEcCchhhccCC
Confidence 357888999888642 46888 99999999999999999999999999999999999996 66662
Q ss_pred --------EEEEcCCCCCC-CCCHHHHhccCCcCCHH---------------HHHHHHHHcccchHHHhhcCCCccccCC
Q 000720 661 --------KAYVPQSSWIQ-TGTIRENILFGKDMRQS---------------FYEEVLEGCALNQDIEMWADGDLSVVGE 716 (1333)
Q Consensus 661 --------iayv~Q~~~i~-~~Tv~enI~~g~~~~~~---------------~~~~v~~~~~l~~d~~~~~~g~~t~ig~ 716 (1333)
||--+|.|.+| +.||+||+......++. +.++++...+|. ...+.
T Consensus 75 e~~IAr~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~-----------~~~~~ 143 (249)
T COG4674 75 EHRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLG-----------DERDR 143 (249)
T ss_pred HHHHHHhccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccc-----------hhhhh
Confidence 57889999876 56999999765433322 333333333332 22334
Q ss_pred CCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeCC
Q 000720 717 RGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDG 795 (1333)
Q Consensus 717 ~g~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~G 795 (1333)
....||.||||++.|+.-+.++|+++|||||.+|+-.....+. .++++.+.++++|++|.|||+|+.. ||+|-||+.|
T Consensus 144 ~A~~LSHGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~t-aeLl~~la~~hsilVVEHDM~Fvr~~A~~VTVlh~G 222 (249)
T COG4674 144 LAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKT-AELLKSLAGKHSILVVEHDMGFVREIADKVTVLHEG 222 (249)
T ss_pred hhhhhccchhhhhhhheeeccCCcEEEecCccCCCcHHHHHHH-HHHHHHHhcCceEEEEeccHHHHHHhhheeEEEecc
Confidence 5679999999999999999999999999999999955443433 3466777788999999999999975 9999999999
Q ss_pred eEEEccChHHHHhh
Q 000720 796 KIEQSGKYEDLIAD 809 (1333)
Q Consensus 796 ~i~~~g~~~~l~~~ 809 (1333)
.+..+|+.+++.++
T Consensus 223 ~VL~EGsld~v~~d 236 (249)
T COG4674 223 SVLAEGSLDEVQND 236 (249)
T ss_pred ceeecccHHHhhcC
Confidence 99999999998763
No 393
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.94 E-value=1.6e-26 Score=232.41 Aligned_cols=192 Identities=26% Similarity=0.350 Sum_probs=149.2
Q ss_pred ccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC-------------eEEEEcCCCC-CCCC--CHH
Q 000720 614 LTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------------KKAYVPQSSW-IQTG--TIR 676 (1333)
Q Consensus 614 L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g-------------~iayv~Q~~~-i~~~--Tv~ 676 (1333)
.+. +|++++|+..||+|.||||||||.++|.|.++|++|++ .+++ .|-.++|+|. -+|. .|-
T Consensus 29 V~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~i-l~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NPRl~iG 107 (267)
T COG4167 29 VKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEI-LINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRIG 107 (267)
T ss_pred ccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceE-EECCccccccchHhhhhheeeeecCCccccChhhhhh
Confidence 445 89999999999999999999999999999999999996 7765 3678999984 2332 222
Q ss_pred HHhccC----CcCCH----HHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCC
Q 000720 677 ENILFG----KDMRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPF 748 (1333)
Q Consensus 677 enI~~g----~~~~~----~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDEP~ 748 (1333)
.-+.+. .++++ ++..+.++..+|-.|-. .-.+..||-||||||+|||||.-+|+|++.||.+
T Consensus 108 qiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdha----------n~~~~~la~~QKQRVaLARALIL~P~iIIaDeAl 177 (267)
T COG4167 108 QILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHA----------NYYPHMLAPGQKQRVALARALILRPKIIIADEAL 177 (267)
T ss_pred hHhcchhhhcccCChHHHHHHHHHHHHHhccCcccc----------ccchhhcCchhHHHHHHHHHHhcCCcEEEehhhh
Confidence 222221 12222 23333445555544322 2356789999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHH-hCCCeEEEecCchhhhhc-CCEEEEEeCCeEEEccChHHHHhhcchHHHH
Q 000720 749 SAVDAHTGTHLFKQCLMGL-LSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDLIADQNSELVR 816 (1333)
Q Consensus 749 saLD~~~~~~l~~~~~~~~-~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~~g~~~~l~~~~~~~~~~ 816 (1333)
++||...+.++.+..+..- +.|..-|+|+.++..+++ +|.|+||++|++++.|+..+++.++..+..+
T Consensus 178 ~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~viVM~EG~vvE~G~t~~v~a~P~~~~Tk 247 (267)
T COG4167 178 ASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGSTADVLASPLHELTK 247 (267)
T ss_pred hhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHhhhhcccEEEEecCceeecCChhhhhcCCccHHHH
Confidence 9999999999887555432 347899999999999987 9999999999999999999999866555443
No 394
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.94 E-value=1.2e-25 Score=273.26 Aligned_cols=200 Identities=28% Similarity=0.432 Sum_probs=162.2
Q ss_pred CCccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC--eEEE
Q 000720 587 SDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--KKAY 663 (1333)
Q Consensus 587 ~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g--~iay 663 (1333)
....++++|++++|+.+ .+++++ ||.|.+|+.+||+||||+||||||+.|+|...|.+|.+ .... ++||
T Consensus 318 g~~vl~~~~~~~~y~~~-------~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v-~~g~~v~igy 389 (530)
T COG0488 318 GKLVLEFENVSKGYDGG-------RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTV-KVGETVKIGY 389 (530)
T ss_pred CCeeEEEeccccccCCC-------ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceE-EeCCceEEEE
Confidence 35679999999999753 578899 99999999999999999999999999999999999986 5543 5899
Q ss_pred EcCCC--CCCCCCHHHHhccCCcC-CHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHHccCCC
Q 000720 664 VPQSS--WIQTGTIRENILFGKDM-RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSD 740 (1333)
Q Consensus 664 v~Q~~--~i~~~Tv~enI~~g~~~-~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ 740 (1333)
.+|+. +..+.|+.|++.-..+. .+...+..+..+.+..+.. ..+...||||||.|+.||+.+.++|.
T Consensus 390 f~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~~----------~~~v~~LSGGEk~Rl~La~ll~~~pN 459 (530)
T COG0488 390 FDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGEDQ----------EKPVGVLSGGEKARLLLAKLLLQPPN 459 (530)
T ss_pred EEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcCCChHHH----------hCchhhcCHhHHHHHHHHHHhccCCC
Confidence 99985 34566999999765532 2455556666665544322 35678999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeCCeEEE-ccChHHHHh
Q 000720 741 VYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQ-SGKYEDLIA 808 (1333)
Q Consensus 741 illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~-~g~~~~l~~ 808 (1333)
+|||||||++||.++.+.+-+ .+.. -..|||+||||.+|++. |++++.+++ ++.. .|+|+++.+
T Consensus 460 vLiLDEPTNhLDi~s~~aLe~-aL~~--f~Gtvl~VSHDr~Fl~~va~~i~~~~~-~~~~~~g~y~~y~~ 525 (530)
T COG0488 460 LLLLDEPTNHLDIESLEALEE-ALLD--FEGTVLLVSHDRYFLDRVATRIWLVED-KVEEFEGGYEDYLE 525 (530)
T ss_pred EEEEcCCCccCCHHHHHHHHH-HHHh--CCCeEEEEeCCHHHHHhhcceEEEEcC-ceeEcCCCHHHHHH
Confidence 999999999999998665533 2222 25799999999999987 999999998 6654 489988865
No 395
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.94 E-value=7.4e-26 Score=251.07 Aligned_cols=179 Identities=24% Similarity=0.275 Sum_probs=118.9
Q ss_pred CcccccC-CeEeeCCcEEEEECCCCCChhHHH-HHHhC--C------------------CcCCCCcEEEECC-eEEEEcC
Q 000720 610 PTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLL-SSILG--E------------------IPRISGAAIKVHG-KKAYVPQ 666 (1333)
Q Consensus 610 ~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl-~~ilG--~------------------~~~~~G~~i~~~g-~iayv~Q 666 (1333)
....+++ ||++++||+++|+|+||||||||+ ..|.+ . ..|..+. ..+ ..++..|
T Consensus 7 ~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 83 (226)
T cd03270 7 REHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMDKPDVDS---IEGLSPAIAID 83 (226)
T ss_pred hhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHHhhcccchhhhhhcccCcccccc---ccCCCceEEec
Confidence 3568899 999999999999999999999996 33321 1 0111110 111 1233444
Q ss_pred CCC-CC--CCCHH---HHhcc-CCcCCH---HHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHHc
Q 000720 667 SSW-IQ--TGTIR---ENILF-GKDMRQ---SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVY 736 (1333)
Q Consensus 667 ~~~-i~--~~Tv~---enI~~-g~~~~~---~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~ 736 (1333)
++. .. ..++. +...+ ...+.. ....+.++.+++. + ...+.++.+||||||||++||||++
T Consensus 84 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~---------~-~~~~~~~~~LSgG~~qrv~laral~ 153 (226)
T cd03270 84 QKTTSRNPRSTVGTVTEIYDYLRLLFARVGIRERLGFLVDVGLG---------Y-LTLSRSAPTLSGGEAQRIRLATQIG 153 (226)
T ss_pred CCCCCCCCCccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHCCCC---------c-ccccCccCcCCHHHHHHHHHHHHHH
Confidence 432 11 11322 21111 000000 0001122222211 1 1245788999999999999999999
Q ss_pred cCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhcCCEEEEE------eCCeEEEcc
Q 000720 737 SNS--DVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVM------KDGKIEQSG 801 (1333)
Q Consensus 737 ~~~--~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~aD~i~vl------~~G~i~~~g 801 (1333)
.+| +++||||||++||+.+.+.+.+.+.+...+|.|+|++||+++++..||++++| ++|+|+++|
T Consensus 154 ~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~~~~~~d~i~~l~~~~~~~~G~iv~~g 226 (226)
T cd03270 154 SGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDEDTIRAADHVIDIGPGAGVHGGEIVAQG 226 (226)
T ss_pred hCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHHHHHhCCEEEEeCCCccccCCEEEecC
Confidence 998 59999999999999998888876544344689999999999998889999999 999999876
No 396
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.93 E-value=9.8e-26 Score=224.98 Aligned_cols=217 Identities=23% Similarity=0.348 Sum_probs=160.6
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC---------
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g--------- 659 (1333)
-.++++.+..|... .--++ +|++.|||..+|+|++||||||||+||.|-+.|+.|++....+
T Consensus 6 LL~V~~lsk~Yg~~--------~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~ 77 (258)
T COG4107 6 LLSVSGLSKLYGPG--------KGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYT 77 (258)
T ss_pred ceeehhhhhhhCCC--------cCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhh
Confidence 45667777777644 33467 9999999999999999999999999999999999998743321
Q ss_pred ------------eEEEEcCCCC--C-CCCCHHHHhccCC-cCCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCCh
Q 000720 660 ------------KKAYVPQSSW--I-QTGTIRENILFGK-DMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSG 723 (1333)
Q Consensus 660 ------------~iayv~Q~~~--i-~~~Tv~enI~~g~-~~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSG 723 (1333)
.-|+|-|+|- + ..-+.--||---. ..-...|.++-. .+. +.++. -+=+.+.+++.+.++||
T Consensus 78 msEaeRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~-~a~-~WL~~-VEI~~~RiDD~PrtFSG 154 (258)
T COG4107 78 MSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRA-EAQ-DWLEE-VEIDLDRIDDLPRTFSG 154 (258)
T ss_pred hchHHHHHHhhhccceeecCccccceeeeccCCccchhHHhhhhhhhhhHHH-HHH-HHHHh-cccCcccccCcccccch
Confidence 2489999984 2 1112233331000 011123333221 111 12222 22345678889999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC--CCeEEEecCchhhhhc-CCEEEEEeCCeEEEc
Q 000720 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQS 800 (1333)
Q Consensus 724 GQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~--~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~~ 800 (1333)
|++||+.|||-|...|+++++||||.|||..++.++.+ +++++-. +-++|+||||+..... +|+.++|++|+++++
T Consensus 155 GMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLD-llrgLv~~l~la~viVTHDl~VarLla~rlmvmk~g~vve~ 233 (258)
T COG4107 155 GMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLD-LLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVES 233 (258)
T ss_pred HHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHH-HHHHHHHhcCceEEEEechhHHHHHhhhcceeecCCCEecc
Confidence 99999999999999999999999999999999998886 5566543 6799999999999876 999999999999999
Q ss_pred cChHHHHhhcchHHHHHH
Q 000720 801 GKYEDLIADQNSELVRQM 818 (1333)
Q Consensus 801 g~~~~l~~~~~~~~~~~~ 818 (1333)
|-.+.++.++...+.+++
T Consensus 234 GLTDrvLDDP~hPYTQLL 251 (258)
T COG4107 234 GLTDRVLDDPHHPYTQLL 251 (258)
T ss_pred ccccccccCCCCchHHHH
Confidence 999988886666555543
No 397
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=2.5e-25 Score=255.90 Aligned_cols=196 Identities=23% Similarity=0.419 Sum_probs=133.7
Q ss_pred CccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhC---CCcCCCCcEEEECCeEEE
Q 000720 588 DVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILG---EIPRISGAAIKVHGKKAY 663 (1333)
Q Consensus 588 ~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG---~~~~~~G~~i~~~g~iay 663 (1333)
...|.+.|.+.+|.. +..|.+ ++++..|-.+++||+||+||||||++|.. ..-|+.-++ .|..-.
T Consensus 78 ~~Di~~~~fdLa~G~--------k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~~~v~~f~veqE~---~g~~t~ 146 (582)
T KOG0062|consen 78 SKDIHIDNFDLAYGG--------KILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIANGQVSGFHVEQEV---RGDDTE 146 (582)
T ss_pred ccceeeeeeeeeecc--------hhhhcCCceeeecccccceeCCCCCcHHHHHHHHHhcCcCccCchhhe---eccchH
Confidence 346777777777754 467888 99999999999999999999999999997 111211111 111111
Q ss_pred EcCCCCCCCCCHHHHhccCC-c-----CCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHHcc
Q 000720 664 VPQSSWIQTGTIRENILFGK-D-----MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYS 737 (1333)
Q Consensus 664 v~Q~~~i~~~Tv~enI~~g~-~-----~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~ 737 (1333)
.-|+ .+...+-+.-.+.-. + -..+.|.+++...+..+++...| ..+||||-|.|++||||+..
T Consensus 147 ~~~~-~l~~D~~~~dfl~~e~~l~~~~~l~ei~~~~L~glGFt~emq~~p----------t~slSGGWrMrlaLARAlf~ 215 (582)
T KOG0062|consen 147 ALQS-VLESDTERLDFLAEEKELLAGLTLEEIYDKILAGLGFTPEMQLQP----------TKSLSGGWRMRLALARALFA 215 (582)
T ss_pred HHhh-hhhccHHHHHHHHhhhhhhccchHHHHHHHHHHhCCCCHHHHhcc----------ccccCcchhhHHHHHHHHhc
Confidence 1111 122233333332211 1 11233444566666666665544 46899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeCCeE-EEccChHHHHh
Q 000720 738 NSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKI-EQSGKYEDLIA 808 (1333)
Q Consensus 738 ~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i-~~~g~~~~l~~ 808 (1333)
+||||||||||+.||.+.-.++-+ .+.. ...|+|+|+||-.|+.. |..|+.+++-++ .+.|+++++.+
T Consensus 216 ~pDlLLLDEPTNhLDv~av~WLe~-yL~t--~~~T~liVSHDr~FLn~V~tdIIH~~~~kL~~YkGN~~~Fvk 285 (582)
T KOG0062|consen 216 KPDLLLLDEPTNHLDVVAVAWLEN-YLQT--WKITSLIVSHDRNFLNTVCTDIIHLENLKLDYYKGNYSQFVK 285 (582)
T ss_pred CCCEEeecCCcccchhHHHHHHHH-HHhh--CCceEEEEeccHHHHHHHHHHHHHHhhhhhhhhcCcHHHHHH
Confidence 999999999999999987665532 2222 24799999999999987 888998888766 36677766654
No 398
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.93 E-value=1.5e-25 Score=239.90 Aligned_cols=188 Identities=26% Similarity=0.309 Sum_probs=138.9
Q ss_pred cccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECCeE------------EEEc-C---CCCCCCC
Q 000720 611 TIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK------------AYVP-Q---SSWIQTG 673 (1333)
Q Consensus 611 ~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g~i------------ayv~-Q---~~~i~~~ 673 (1333)
.+..+| ||+|++|++++++|+|||||||+||+|.|.+.|++|.+ .+.|.+ ++|. | --|-.+
T Consensus 37 ~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v-~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp- 114 (325)
T COG4586 37 IEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKV-RVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLP- 114 (325)
T ss_pred hhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeE-EecCcCcchhHHHHHHHHHHHhhhhheeeeech-
Confidence 346788 99999999999999999999999999999999999986 887743 3333 2 123111
Q ss_pred CHHHHhccC---CcCCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCC
Q 000720 674 TIRENILFG---KDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSA 750 (1333)
Q Consensus 674 Tv~enI~~g---~~~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDEP~sa 750 (1333)
+.|-+... .+.....|++-.+..- +.+ +....+..+...||-|||.|+.||.||.++|+|++|||||-|
T Consensus 115 -~~ds~~v~~~Iy~Ipd~~F~~r~~~l~-----eiL--dl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvg 186 (325)
T COG4586 115 -ALDSLEVLKLIYEIPDDEFAERLDFLT-----EIL--DLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVG 186 (325)
T ss_pred -hhhhHHHHHHHHhCCHHHHHHHHHHHH-----HHh--cchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccC
Confidence 22222111 1222333333332111 111 112234467789999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHH-HhCCCeEEEecCchhhhhc-CCEEEEEeCCeEEEccChHHHHh
Q 000720 751 VDAHTGTHLFKQCLMG-LLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDLIA 808 (1333)
Q Consensus 751 LD~~~~~~l~~~~~~~-~~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~~g~~~~l~~ 808 (1333)
||..++..+.+-+... ..++.||+++||+++-+.. ||||++|+.|+++++|+.+++.+
T Consensus 187 LDV~aq~~ir~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv~dg~l~~l~~ 246 (325)
T COG4586 187 LDVNAQANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQE 246 (325)
T ss_pred cchhHHHHHHHHHHHHHHhhCceEEEEecchhhHHHhhhheEEeeCCcEeecccHHHHHH
Confidence 9999888776543322 2357899999999988765 99999999999999999998876
No 399
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.93 E-value=2.4e-23 Score=263.00 Aligned_cols=197 Identities=23% Similarity=0.312 Sum_probs=147.9
Q ss_pred cccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCC---CCcEEEEC----------CeEEEEcCCC-CCCCCCH
Q 000720 611 TIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRI---SGAAIKVH----------GKKAYVPQSS-WIQTGTI 675 (1333)
Q Consensus 611 ~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~---~G~~i~~~----------g~iayv~Q~~-~i~~~Tv 675 (1333)
...++| +.-+++|+.+.+.||.||||||||+++.|..+.. .|++ ..+ +.++|++|+. .+...||
T Consensus 128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~i-sy~G~~~~e~~~~~~~aY~~e~DvH~p~lTV 206 (1391)
T KOG0065|consen 128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEI-TYNGHDLKEFVPKKTVAYNSEQDVHFPELTV 206 (1391)
T ss_pred ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCce-eECCCcccccccCceEEeccccccccceeEE
Confidence 357899 9999999999999999999999999999987632 3333 333 4579999975 5778999
Q ss_pred HHHhccCCc--CCHHHHHHHHHHccc--chH----HHhhcCCCccccCCC-CCCCChHHHHHHHHHHHHccCCCEEEEeC
Q 000720 676 RENILFGKD--MRQSFYEEVLEGCAL--NQD----IEMWADGDLSVVGER-GINLSGGQKQRIQLARAVYSNSDVYIFDD 746 (1333)
Q Consensus 676 ~enI~~g~~--~~~~~~~~v~~~~~l--~~d----~~~~~~g~~t~ig~~-g~~LSGGQkqRv~LARAl~~~~~illLDE 746 (1333)
||-+.|... ....+|+++.+...+ ..| +-.+.+..+|.+|.. ..-.|||||+||++|-++..+++++..||
T Consensus 207 reTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De 286 (1391)
T KOG0065|consen 207 RETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDE 286 (1391)
T ss_pred eehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeec
Confidence 999998532 111122211111000 011 112344556778754 46789999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHH-hCCCeEEEecCchhh--hhcCCEEEEEeCCeEEEccChHHHHh
Q 000720 747 PFSAVDAHTGTHLFKQCLMGL-LSQKTVLYTTHQLEF--LDAADLVLVMKDGKIEQSGKYEDLIA 808 (1333)
Q Consensus 747 P~saLD~~~~~~l~~~~~~~~-~~~~TvIlvtH~~~~--l~~aD~i~vl~~G~i~~~g~~~~l~~ 808 (1333)
++.|||..++-++.+.+.+.. .-+.|.++.-||... .+..|.|++|.+|++++.|+.++.+.
T Consensus 287 ~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~ 351 (1391)
T KOG0065|consen 287 ITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLP 351 (1391)
T ss_pred ccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHH
Confidence 999999999887776443332 347899999998743 56799999999999999999998875
No 400
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.93 E-value=3.4e-25 Score=276.89 Aligned_cols=209 Identities=24% Similarity=0.396 Sum_probs=167.7
Q ss_pred ccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcC---CCCcEEEECC-----
Q 000720 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR---ISGAAIKVHG----- 659 (1333)
Q Consensus 589 ~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~---~~G~~i~~~g----- 659 (1333)
..+.++|.+.+-+.... ..+..|++ +.++++||+.||+||+||||||||++|+|-.+. .+|.+ .++|
T Consensus 24 ~~~~~~~~~~~~~~~~~---~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~i-lvNG~~~~~ 99 (613)
T KOG0061|consen 24 VKLSFRNLTLSSKEKSK---KTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEI-LLNGRPRDS 99 (613)
T ss_pred ceeEEEEEEEEecCCCC---ccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEE-EECCccCch
Confidence 35677777766544311 24678999 999999999999999999999999999998874 67875 8887
Q ss_pred -----eEEEEcCCCC-CCCCCHHHHhccCCc------CC----HHHHHHHHHHcccchHHHhhcCCCccccCC-CCCCCC
Q 000720 660 -----KKAYVPQSSW-IQTGTIRENILFGKD------MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGE-RGINLS 722 (1333)
Q Consensus 660 -----~iayv~Q~~~-i~~~Tv~enI~~g~~------~~----~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~-~g~~LS 722 (1333)
..|||.|+.. +.+.||+|++.|... .. +++.+++++..+|. +-.+|.+|. ....+|
T Consensus 100 ~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~-------~~~~t~ig~~~~rgiS 172 (613)
T KOG0061|consen 100 RSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLE-------KCADTLIGNPGIRGLS 172 (613)
T ss_pred hhhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCh-------hhccceecCCCCCccc
Confidence 2599999865 567899999987421 12 24455555555544 223466653 336899
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhh--hhcCCEEEEEeCCeEEEc
Q 000720 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEF--LDAADLVLVMKDGKIEQS 800 (1333)
Q Consensus 723 GGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~--l~~aD~i~vl~~G~i~~~ 800 (1333)
||||+||++|.-+..||.|++|||||||||..++.++.+.+.+...+|+|||++-||+.. .+..|++++|.+|++++.
T Consensus 173 GGErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~ 252 (613)
T KOG0061|consen 173 GGERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVYS 252 (613)
T ss_pred cchhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEe
Confidence 999999999999999999999999999999999999998766666779999999999964 467999999999999999
Q ss_pred cChHHHHh
Q 000720 801 GKYEDLIA 808 (1333)
Q Consensus 801 g~~~~l~~ 808 (1333)
|+++++.+
T Consensus 253 G~~~~~~~ 260 (613)
T KOG0061|consen 253 GSPRELLE 260 (613)
T ss_pred cCHHHHHH
Confidence 99987754
No 401
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=3.8e-24 Score=225.35 Aligned_cols=199 Identities=24% Similarity=0.300 Sum_probs=151.9
Q ss_pred EEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCC--CcCCCCcEEEECCe-------
Q 000720 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGE--IPRISGAAIKVHGK------- 660 (1333)
Q Consensus 591 I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~--~~~~~G~~i~~~g~------- 660 (1333)
.+++|.+.+-+.+ +.+|++ ||+|++||+.+|.||||||||||.++|+|. +.+++|++ .++|.
T Consensus 4 L~I~dLhv~v~~~-------keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I-~~~GedI~~l~~ 75 (251)
T COG0396 4 LEIKDLHVEVEGK-------KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEI-LFDGEDILELSP 75 (251)
T ss_pred eEEeeeEEEecCc-------hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceE-EECCcccccCCH
Confidence 5788888766431 479999 999999999999999999999999999996 47899986 77763
Q ss_pred -------EEEEcCCCCCC-CCCHHHHhccCCcC-------CHHHHHH---HHHHcccchHHHhhcCCCccccCCCCCCCC
Q 000720 661 -------KAYVPQSSWIQ-TGTIRENILFGKDM-------RQSFYEE---VLEGCALNQDIEMWADGDLSVVGERGINLS 722 (1333)
Q Consensus 661 -------iayv~Q~~~i~-~~Tv~enI~~g~~~-------~~~~~~~---v~~~~~l~~d~~~~~~g~~t~ig~~g~~LS 722 (1333)
+...+|.|.-. --|+.+.+.-+... ..+..++ .++...+++++. . ..+ ...+|
T Consensus 76 ~ERAr~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l--~----R~v---N~GFS 146 (251)
T COG0396 76 DERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFL--E----RYV---NEGFS 146 (251)
T ss_pred hHHHhcCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHh--h----ccc---CCCcC
Confidence 46888999744 44888887643111 1223333 333333333221 1 112 24699
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEecCchhhhhc--CCEEEEEeCCeEEE
Q 000720 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA--ADLVLVMKDGKIEQ 799 (1333)
Q Consensus 723 GGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~-~~~TvIlvtH~~~~l~~--aD~i~vl~~G~i~~ 799 (1333)
||+|+|..|+.++..+|++.|||||=||||...-+.+- +.++.++ ++.+++++||.-+.+.+ .|++.+|-+|+|+.
T Consensus 147 GGEkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~-~~i~~lr~~~~~~liITHy~rll~~i~pD~vhvl~~GrIv~ 225 (251)
T COG0396 147 GGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVA-EGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVK 225 (251)
T ss_pred cchHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHH-HHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEEEECCEEEe
Confidence 99999999999999999999999999999998765554 4555444 58999999999999887 59999999999999
Q ss_pred ccChHHHHh
Q 000720 800 SGKYEDLIA 808 (1333)
Q Consensus 800 ~g~~~~l~~ 808 (1333)
+|.+ ++..
T Consensus 226 sG~~-el~~ 233 (251)
T COG0396 226 SGDP-ELAE 233 (251)
T ss_pred cCCH-HHHH
Confidence 9998 6544
No 402
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.92 E-value=1.3e-24 Score=243.49 Aligned_cols=181 Identities=26% Similarity=0.336 Sum_probs=125.4
Q ss_pred ccccC-CeEeeCCcEEEEECCCCCChhHHHHHHh--------CCC--cCCCCcEE---EECCeEEEEcCCCC--------
Q 000720 612 IKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSIL--------GEI--PRISGAAI---KVHGKKAYVPQSSW-------- 669 (1333)
Q Consensus 612 ~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~il--------G~~--~~~~G~~i---~~~g~iayv~Q~~~-------- 669 (1333)
..|+| +++|+.|++++|+|++|||||||++.++ +.. .|..++.+ .--+++-+|.|.|.
T Consensus 9 ~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~~ 88 (261)
T cd03271 9 NNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSNP 88 (261)
T ss_pred hcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCcH
Confidence 46889 9999999999999999999999999763 110 12211110 00112344444432
Q ss_pred ---------------------------------------CCCCCHHHHhccCCcCCH-HHHHHHHHHcccchHHHhhcCC
Q 000720 670 ---------------------------------------IQTGTIRENILFGKDMRQ-SFYEEVLEGCALNQDIEMWADG 709 (1333)
Q Consensus 670 ---------------------------------------i~~~Tv~enI~~g~~~~~-~~~~~v~~~~~l~~d~~~~~~g 709 (1333)
+.+.|+.||+.|.....+ .+..+.++.+ |
T Consensus 89 ~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~~~~~~~~~L~~v-----------g 157 (261)
T cd03271 89 ATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIPKIARKLQTLCDV-----------G 157 (261)
T ss_pred HHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhhhHHHHHHHHHHc-----------C
Confidence 233445555443222111 1111111111 2
Q ss_pred Ccc-ccCCCCCCCChHHHHHHHHHHHHccC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc
Q 000720 710 DLS-VVGERGINLSGGQKQRIQLARAVYSN---SDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA 785 (1333)
Q Consensus 710 ~~t-~ig~~g~~LSGGQkqRv~LARAl~~~---~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~ 785 (1333)
... ..+++..+||||||||++||||+.++ |++++|||||++||++..+.+.+.+.+...+|.|+|++||+++++..
T Consensus 158 L~~l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~~i~~ 237 (261)
T cd03271 158 LGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVIKC 237 (261)
T ss_pred CchhhhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh
Confidence 211 25678899999999999999999996 79999999999999999888876544334468999999999999988
Q ss_pred CCEEEEE------eCCeEEEccCh
Q 000720 786 ADLVLVM------KDGKIEQSGKY 803 (1333)
Q Consensus 786 aD~i~vl------~~G~i~~~g~~ 803 (1333)
||++++| ++|+|+++|++
T Consensus 238 aD~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 238 ADWIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred CCEEEEecCCcCCCCCEEEEeCCC
Confidence 9999999 89999999874
No 403
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.92 E-value=3e-25 Score=252.27 Aligned_cols=123 Identities=38% Similarity=0.654 Sum_probs=115.6
Q ss_pred ccEEEEEEEEEECCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCCCChHHHhhcC
Q 000720 1206 GKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRL 1285 (1333)
Q Consensus 1206 G~I~f~nVsf~Y~~~~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~i~l~~LRs~i 1285 (1333)
|+|+|+||+++|+++.+++|+|+||+|++||++|||||||||||||+++|+|+++ ++|+|.|||+|+.+++++++|++|
T Consensus 1 g~i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i 79 (275)
T cd03289 1 GQMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAF 79 (275)
T ss_pred CeEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhE
Confidence 6799999999997655679999999999999999999999999999999999998 789999999999999999999999
Q ss_pred eEecccccccccchhhhcCCCCCCCHHHHHHHHHhCCCCccccc
Q 000720 1286 SIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVKISKLLTHKSYQ 1329 (1333)
Q Consensus 1286 siVpQdp~LF~GTIR~NLdp~~~~sDeeI~~aL~~~~L~~~~~~ 1329 (1333)
++|||+|.+|++|+++||+|++..+++++|++++.++|.+...+
T Consensus 80 ~~v~q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~ 123 (275)
T cd03289 80 GVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQ 123 (275)
T ss_pred EEECCCcccchhhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHh
Confidence 99999999999999999999888899999999999999865443
No 404
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=1.3e-24 Score=253.37 Aligned_cols=155 Identities=21% Similarity=0.339 Sum_probs=126.4
Q ss_pred HHhhHHHHHHHhhcCCCCCCcccC------CC---CCCCCCCCcccEEEEEEEEEECCCCCCccccceEEecCCcEEEEE
Q 000720 1171 NKMISVERILQFTNIPSEAPLVIK------NS---RPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVV 1241 (1333)
Q Consensus 1171 ~~~~SveRI~~~~~~p~E~~~~~~------~~---~~~~~wp~~G~I~f~nVsf~Y~~~~p~VLk~Is~~I~~GekVgIV 1241 (1333)
+.+.+++|+.+|+..+.|.....+ +. ..+..||..|.|+|+|++++|+++.+++|+|+||+|++||++|||
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~Iv 114 (329)
T PRK14257 35 QKLNKYQRAFAWLKLPKQKKAELKQFLNKKKTQVDLLKEDFNHANVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFI 114 (329)
T ss_pred hccccccchhhHHhcccccchhhhhcccccccccccccCCCCcCceEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEE
Confidence 456778888888777655432111 10 113469999999999999999755556999999999999999999
Q ss_pred CCCCccHHHHHHHHhcccC-----CCCCeEEEcCEeCC--CCChHHHhhcCeEecccccccccchhhhcC--C-CCCCCH
Q 000720 1242 GRTGSGKSTLIQALFRVVE-----PSGGRILIDGVDIS--MIGLQDLRSRLSIIPQDPMLFQGTVRTNLD--P-LEQHSD 1311 (1333)
Q Consensus 1242 GrTGSGKSTLi~lL~Rl~e-----p~~G~I~IDGvdI~--~i~l~~LRs~isiVpQdp~LF~GTIR~NLd--p-~~~~sD 1311 (1333)
||||||||||+++|+|+++ |++|+|.|||+||+ ++++.++|+++++|||+|.+|++|||+||+ | +..++|
T Consensus 115 G~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~ 194 (329)
T PRK14257 115 GPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGIND 194 (329)
T ss_pred CCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCCh
Confidence 9999999999999999997 57999999999997 567789999999999999999999999998 3 234566
Q ss_pred HH-----HHHHHHhCCCCc
Q 000720 1312 QE-----IWEVKISKLLTH 1325 (1333)
Q Consensus 1312 ee-----I~~aL~~~~L~~ 1325 (1333)
++ +.++|++|+|++
T Consensus 195 ~~~~~~~~~~~l~~~~L~~ 213 (329)
T PRK14257 195 RKILEKIVEKSLKSAALWD 213 (329)
T ss_pred HHHHHHHHHHHHHHcCCcc
Confidence 55 456789999853
No 405
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=2.3e-24 Score=220.08 Aligned_cols=162 Identities=27% Similarity=0.361 Sum_probs=126.7
Q ss_pred CcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECCe------------EEEEcCCCCC-CCCCH
Q 000720 610 PTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK------------KAYVPQSSWI-QTGTI 675 (1333)
Q Consensus 610 ~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g~------------iayv~Q~~~i-~~~Tv 675 (1333)
+...+.+ +|++.+||.+.|.|||||||||||++|+|+++|.+|++ ..++. .-|+..+|-+ ...|+
T Consensus 14 e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v-~~~~~~i~~~~~~~~~~l~yLGH~~giK~eLTa 92 (209)
T COG4133 14 ERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEV-YWQGEPIQNVRESYHQALLYLGHQPGIKTELTA 92 (209)
T ss_pred cceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeE-EecCCCCccchhhHHHHHHHhhccccccchhhH
Confidence 3467888 99999999999999999999999999999999999997 66532 2355555554 45799
Q ss_pred HHHhccCCcCC----HHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCC
Q 000720 676 RENILFGKDMR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAV 751 (1333)
Q Consensus 676 ~enI~~g~~~~----~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDEP~saL 751 (1333)
+||+.|-.++. .....++++..+|. +++ +.+..+||-|||+||+|||-..+.+++.|||||+++|
T Consensus 93 ~ENL~F~~~~~~~~~~~~i~~Al~~vgL~-g~~----------dlp~~~LSAGQqRRvAlArL~ls~~pLWiLDEP~taL 161 (209)
T COG4133 93 LENLHFWQRFHGSGNAATIWEALAQVGLA-GLE----------DLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTAL 161 (209)
T ss_pred HHHHHHHHHHhCCCchhhHHHHHHHcCcc-ccc----------ccchhhcchhHHHHHHHHHHHcCCCCceeecCccccc
Confidence 99999865432 34445556655553 222 2456799999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHH-HhCCCeEEEecCchhhhh
Q 000720 752 DAHTGTHLFKQCLMG-LLSQKTVLYTTHQLEFLD 784 (1333)
Q Consensus 752 D~~~~~~l~~~~~~~-~~~~~TvIlvtH~~~~l~ 784 (1333)
|.+. ..++..++.. ..+|..||++||+.-.+.
T Consensus 162 Dk~g-~a~l~~l~~~H~~~GGiVllttHq~l~~~ 194 (209)
T COG4133 162 DKEG-VALLTALMAAHAAQGGIVLLTTHQPLPIA 194 (209)
T ss_pred CHHH-HHHHHHHHHHHhcCCCEEEEecCCccCCC
Confidence 9976 5566666654 456889999999865443
No 406
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.91 E-value=2.7e-23 Score=276.33 Aligned_cols=94 Identities=28% Similarity=0.399 Sum_probs=82.9
Q ss_pred cCCCCCCCChHHHHHHHHHHHHc---cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhcCCEEE
Q 000720 714 VGERGINLSGGQKQRIQLARAVY---SNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVL 790 (1333)
Q Consensus 714 ig~~g~~LSGGQkqRv~LARAl~---~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~aD~i~ 790 (1333)
.++...+||||||||++|||||+ .+|++|||||||++||++..+.+++.+.+...+|+|||++||+++.+..||+++
T Consensus 803 l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~i~~aDrVi 882 (1809)
T PRK00635 803 LGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHVVKVADYVL 882 (1809)
T ss_pred hcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEE
Confidence 47788999999999999999997 699999999999999999988887754444446899999999999997799999
Q ss_pred EEe------CCeEEEccChHHHH
Q 000720 791 VMK------DGKIEQSGKYEDLI 807 (1333)
Q Consensus 791 vl~------~G~i~~~g~~~~l~ 807 (1333)
+|+ +|+++..|+++++.
T Consensus 883 ~L~p~gg~~~G~iv~~Gtpeel~ 905 (1809)
T PRK00635 883 ELGPEGGNLGGYLLASCSPEELI 905 (1809)
T ss_pred EEccCCCCCCCEEEEeCCHHHHH
Confidence 996 78999999887764
No 407
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.91 E-value=1.6e-24 Score=221.53 Aligned_cols=122 Identities=39% Similarity=0.592 Sum_probs=103.6
Q ss_pred ccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC-------------eEEEEcCCCCCCC-CCHHHH
Q 000720 614 LTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------------KKAYVPQSSWIQT-GTIREN 678 (1333)
Q Consensus 614 L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g-------------~iayv~Q~~~i~~-~Tv~en 678 (1333)
|++ |+++++|++++|+|+||||||||+++|+|..+|.+|.+ .+++ .++|++|++.++. .|++||
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~ 79 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSI-LINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVREN 79 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEE-EETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHH
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeeccccccccccc-ccccccccccccccccccccccccccccccccccccc
Confidence 578 99999999999999999999999999999999999986 6665 3799999987665 579999
Q ss_pred hccCCcCCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCC
Q 000720 679 ILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFS 749 (1333)
Q Consensus 679 I~~g~~~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDEP~s 749 (1333)
...++++++++.+++.. ...+.++.++.+||||||||++||||++++|++++||||||
T Consensus 80 ------~~~~~~~~~l~~l~~~~-------~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 80 ------ESDERIEEVLKKLGLED-------LLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp ------HHHHHHHHHHHHTTHGG-------GTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred ------ccccccccccccccccc-------ccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 33455666776665443 23456777889999999999999999999999999999996
No 408
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.90 E-value=9.2e-24 Score=228.98 Aligned_cols=151 Identities=22% Similarity=0.214 Sum_probs=115.9
Q ss_pred CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCC---------cEE---------EECCeEEEEcCCCCCCCCCHHHH
Q 000720 617 KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISG---------AAI---------KVHGKKAYVPQSSWIQTGTIREN 678 (1333)
Q Consensus 617 nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G---------~~i---------~~~g~iayv~Q~~~i~~~Tv~en 678 (1333)
++++++| +++|+||||||||||+++|.|.+++..| .++ ....+++|++|+|..+
T Consensus 17 ~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~------- 88 (197)
T cd03278 17 TIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGR------- 88 (197)
T ss_pred eeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCc-------
Confidence 7899999 9999999999999999999998866532 111 0123689999999876
Q ss_pred hccCCcCCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHHc----cCCCEEEEeCCCCCCCHH
Q 000720 679 ILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVY----SNSDVYIFDDPFSAVDAH 754 (1333)
Q Consensus 679 I~~g~~~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~----~~~~illLDEP~saLD~~ 754 (1333)
|+.. ..++.+++++. . ....+++.+||||||||++||||+. ++|++++||||+++||+.
T Consensus 89 --~~~~-~~~~~~~~l~~----------~----~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~ 151 (197)
T cd03278 89 --YSII-SQGDVSEIIEA----------P----GKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDA 151 (197)
T ss_pred --eeEE-ehhhHHHHHhC----------C----CccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHH
Confidence 2211 12233333332 1 1123567899999999999999986 577999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCeEEEecCchhhhhcCCEEEEEe
Q 000720 755 TGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMK 793 (1333)
Q Consensus 755 ~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~aD~i~vl~ 793 (1333)
....+.+ .++...++.|+|++||+++.+..||+++.|.
T Consensus 152 ~~~~l~~-~l~~~~~~~tiIiitH~~~~~~~~d~v~~~~ 189 (197)
T cd03278 152 NVERFAR-LLKEFSKETQFIVITHRKGTMEAADRLYGVT 189 (197)
T ss_pred HHHHHHH-HHHHhccCCEEEEEECCHHHHhhcceEEEEE
Confidence 9888776 4455555789999999999988899999985
No 409
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=99.90 E-value=1.8e-19 Score=207.03 Aligned_cols=458 Identities=17% Similarity=0.181 Sum_probs=257.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCC-----ChHH---HHHHHHhhHHHHHHH
Q 000720 317 GLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSALTVLIYKRSMAIKFAGP-----SSGI---IINMINVDVERIGDF 388 (1333)
Q Consensus 317 g~~l~~~l~~~~~~~~l~~~~~~~~~~~~~~rir~~l~~~iy~K~L~ls~~~~-----~~G~---i~nlms~D~~~i~~~ 388 (1333)
++.+.-. ++..+-.++.+..-.|...+++...|.-|+.-+|++=+. ++.- ..|. .-|-++.|+..+.+.
T Consensus 157 ~~~LlkW-~liaiPAtFvNS~Iryle~klaLafrtrL~~h~y~~Y~s--nqTyY~Vsn~d~~i~n~D~sLTeDI~~Fs~s 233 (728)
T KOG0064|consen 157 LWDLLKW-FLIAIPASFVNSAIRYLESKLALAFRTRLTRHAYDMYLS--NQTFYKVSNLDSVIENADNSLTEDIAKFSDS 233 (728)
T ss_pred HHHHHHH-HhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cCceEEEecccchhcCccchhHHHHHHHHHH
Confidence 4444422 333334456666777888899999999999999998763 3211 2222 335688999888877
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhh
Q 000720 389 FLYIHRIWLLP-VQVFLALVILYKNLGAAPAFAALFSTIFVMVSNTPLANRQERFHSMIMEAKDAR----IKATSETLKS 463 (1333)
Q Consensus 389 ~~~~~~~w~~p-lqi~~~l~lL~~~lG~~a~l~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~R----~~~~~E~L~~ 463 (1333)
...+..-.+-| +.++++.+-|-...+ --...|.....+.+.++..+-|..+.--.++......| -.+=+.+++|
T Consensus 234 vahLysnLtKP~lDl~l~s~~L~~s~~-s~g~~~~~~~~lvv~lTa~iLr~~sP~Fg~Lv~eeA~r~g~lr~~Hs~ii~N 312 (728)
T KOG0064|consen 234 VAHLYSNLTKPVLDLILISFTLLDSAT-SVGAAGITLAGLVVYLTAFILRAVSPKFGKLVAEEAARKGYLRYLHSNIITN 312 (728)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhhhc-cccccchhhhhhHHHHHHHHHHHhCCchhhHHHHHHhhccHHHHHHHHHhcc
Confidence 66555555555 455555554444332 11111111122222223333333222222222222222 2345678888
Q ss_pred hHHHHHhchHHHHHHHHHHHHHHHH---H-HHHHHHHHHHHHHHH---HHHHHHH--HHHHH-HHHHHHhcCC--CC---
Q 000720 464 MRVLKLLSWEQEFLKKLLRLREIER---D-SLKKYLYTCSAIAFL---FWASPTL--VSVIT-FGVCILLKTP--LT--- 528 (1333)
Q Consensus 464 Ir~IK~~~wE~~f~~~i~~~R~~E~---~-~l~~~~~~~a~~~~~---~~~~p~l--v~~~t-F~~~~~~~~~--Lt--- 528 (1333)
-.-|-+|+-.+.=.+++++.-+.=. . ..++.......-.|+ .|+..-+ +++=. +++. ..++. +.
T Consensus 313 sEEIAfy~GhkvE~~ql~~sy~~L~~qm~li~k~r~~YiMleqF~mKYvWsg~GlvmvsiPI~~~t~-~s~~~~~~~e~~ 391 (728)
T KOG0064|consen 313 SEEIAFYGGHKVELTQVDESYNRLVEQMNLIFKVRLWYIMLEQFVMKYTWSGTGLVMVSIPILTSTL-ASEGTLQLSEEG 391 (728)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCceEEEEeeeeeccc-CCCCcccccccc
Confidence 8999999887665555554322111 1 111111111111111 2221111 11000 1111 11121 11
Q ss_pred --HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cC------CCCCC-----CC--------CCCC
Q 000720 529 --SGAVLSA-LATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKE-DN------QKKPI-----TE--------PTSK 585 (1333)
Q Consensus 529 --~~~vft~-lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~-~e------~~~~~-----~~--------~~~~ 585 (1333)
-...|++ =-++-.....+..+-...-.+.|-..--.|+.+.++- ++ +...+ ++ .+-+
T Consensus 392 ~srt~~f~t~r~LL~saAdAieRlMssyKeItqLaGyt~Rv~~mf~v~~dv~~g~~~k~~v~e~~~~~~~~e~r~s~~l~ 471 (728)
T KOG0064|consen 392 NSRTKEFITNRRLLLSAADAIERLMSSYKEITQLAGYTNRVFTMFSVLHDVHKGNYNKTAVPEILSSRTIDESRNSNPLP 471 (728)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccccccccCchhhccCccccccCCcCC
Confidence 1122322 2223333344444555555555555566677644421 11 00000 00 0000
Q ss_pred -----CCCccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEE--
Q 000720 586 -----ASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKV-- 657 (1333)
Q Consensus 586 -----~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~-- 657 (1333)
.....|.++|+..-=|+. ..+... +|+|++|..+.|+||||||||+|.+.|.|+-|...|.. ..
T Consensus 472 ~~~~i~~~~gI~lenIpvItP~~-------~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L-~~P~ 543 (728)
T KOG0064|consen 472 TTDAIRNFNGIILENIPVITPAG-------DVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLL-SIPR 543 (728)
T ss_pred ccchhhcccceEEecCceeccCc-------ceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCee-ecCC
Confidence 012347777776655543 334555 99999999999999999999999999999988877754 33
Q ss_pred CCeEEEEcCCCCCCCCCHHHHhccCCc--------CCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHH
Q 000720 658 HGKKAYVPQSSWIQTGTIRENILFGKD--------MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRI 729 (1333)
Q Consensus 658 ~g~iayv~Q~~~i~~~Tv~enI~~g~~--------~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv 729 (1333)
..++-|+||.|..--||.||-|.+... +.+.....+++...|+.-+ ....|-+ .+-+--.-||||+|||+
T Consensus 544 ~~~mFYIPQRPYms~gtlRDQIIYPdS~e~~~~kg~~d~dL~~iL~~v~L~~i~-qr~~g~d-a~~dWkd~LsgGekQR~ 621 (728)
T KOG0064|consen 544 PNNIFYIPQRPYMSGGTLRDQIIYPDSSEQMKRKGYTDQDLEAILDIVHLEHIL-QREGGWD-AVRDWKDVLSGGEKQRM 621 (728)
T ss_pred CcceEeccCCCccCcCcccceeecCCcHHHHHhcCCCHHHHHHHHHHhhHHHHH-HhccChh-hhccHHhhccchHHHHH
Confidence 346899999999888999999998632 2233444555555444222 2222211 12222347999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhcCCEEEEE
Q 000720 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVM 792 (1333)
Q Consensus 730 ~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~aD~i~vl 792 (1333)
++||..|++|+.-+|||.|||+.+++...+|+.+. ..|.+.|-|||++...+.-.+.+-.
T Consensus 622 ~mARm~yHrPkyalLDEcTsAvsidvE~~i~~~ak---~~gi~llsithrpslwk~h~~ll~~ 681 (728)
T KOG0064|consen 622 GMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAK---DAGISLLSITHRPSLWKYHTHLLEF 681 (728)
T ss_pred HHHHHHhcCcchhhhhhhhcccccchHHHHHHHHH---hcCceEEEeecCccHHHHHHHHHhc
Confidence 99999999999999999999999999888887432 2478999999999877654444433
No 410
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.90 E-value=2.2e-23 Score=271.64 Aligned_cols=201 Identities=22% Similarity=0.341 Sum_probs=162.5
Q ss_pred ccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC--------
Q 000720 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------- 659 (1333)
Q Consensus 589 ~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g-------- 659 (1333)
.++.+++.+..|+.. . . ..++ ++.|++||+.++.|+|||||||++++|.|+.+|++|++ .+.|
T Consensus 563 ~~~~~~~L~k~y~~~-----~-~-Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a-~i~g~~i~~~~~ 634 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGK-----D-G-AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEA-LIKGHDITVSTD 634 (885)
T ss_pred ceEEEcceeeeecch-----h-h-hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceE-EEecCccccccc
Confidence 467888888888765 1 1 6778 99999999999999999999999999999999999986 4433
Q ss_pred ------eEEEEcCCCCC-CCCCHHHHhccCCcC---CHHH----HHHHHHHcccchHHHhhcCCCccccCCCCCCCChHH
Q 000720 660 ------KKAYVPQSSWI-QTGTIRENILFGKDM---RQSF----YEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (1333)
Q Consensus 660 ------~iayv~Q~~~i-~~~Tv~enI~~g~~~---~~~~----~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQ 725 (1333)
.+|||||..-+ ...|.||.+.+-... .+.. .++.+++.+|. +.++ ....++|||+
T Consensus 635 ~~~~~~~iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~------~~~~-----~~~~~ySgG~ 703 (885)
T KOG0059|consen 635 FQQVRKQLGYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLG------PYAN-----KQVRTYSGGN 703 (885)
T ss_pred hhhhhhhcccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCCh------hhhc-----cchhhCCCcc
Confidence 37999998554 567999999874321 1222 23334444333 2222 4578999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeCCeEEEccChH
Q 000720 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYE 804 (1333)
Q Consensus 726 kqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~~g~~~ 804 (1333)
|+|+++|-|+..+|++++||||++|+||+.++++++.+.+..+.++.+|++||.+++.+. |||+.+|.+|++...|+++
T Consensus 704 kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMeE~EaLCtR~aImv~G~l~ciGs~q 783 (885)
T KOG0059|consen 704 KRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSMEEAEALCTRTAIMVIGQLRCIGSPQ 783 (885)
T ss_pred hhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHhhhhheeecCeeEEecChH
Confidence 999999999999999999999999999999888876443334445699999999999987 9999999999999999999
Q ss_pred HHHh
Q 000720 805 DLIA 808 (1333)
Q Consensus 805 ~l~~ 808 (1333)
++..
T Consensus 784 ~LKs 787 (885)
T KOG0059|consen 784 ELKS 787 (885)
T ss_pred HHHh
Confidence 9975
No 411
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.88 E-value=1.1e-19 Score=219.25 Aligned_cols=382 Identities=17% Similarity=0.130 Sum_probs=257.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCcc------hhHHHHhccHHHHHhHH
Q 000720 928 QLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSS------RILNRCSTDQSTVDTDI 1001 (1333)
Q Consensus 928 ~~l~vy~~l~~~~~i~~~~~~~~~~~~~~~~s~~L~~~ll~~il~ap~~fFd~tp~G------rIlnRfs~Di~~vd~~l 1001 (1333)
..+.+|..++.+.......+.++-.....+.-..|-+.++++-+..- .||--...| ..=.|+..|+...-+.-
T Consensus 87 ~~l~~f~~ia~~~v~~~v~~~~L~~~l~~~wR~wLt~~l~~~wl~~~-~~y~l~~~~~~~~~dNpDQRi~eDi~~~t~~t 165 (604)
T COG4178 87 QQLQVFAIIAGLLVLLNVAQTWLNQMLRLRWREWLTKDLLDRWLDPR-RYYRLAQAGGIGLIDNPDQRIQEDIRNFTETT 165 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chHHHHhcccccCCCChHHhHHHHHHHHHhhH
Confidence 34677888888888888888888888888888888888888888766 444433333 23368888887776665
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh--------------HHH-HHHHHH----HHHHHHHHHHHHHHHHHHHHHHhHhh
Q 000720 1002 PYRLAGLAFALIQLLSIIILMSQAAW--------------QVF-PLFLVI----LGISIWYQAYYITTARELARMVGTRK 1062 (1333)
Q Consensus 1002 ~~~l~~~~~~~~~~l~~ivv~~~~~~--------------~l~-lv~ipl----~~~~~~~~~~y~~~srel~rl~~~~~ 1062 (1333)
-.....++.++++++.-.+++.-.+- .++ .+++.. ..+..++.+...+-.-+..+.++.-|
T Consensus 166 ~~l~~g~l~s~islisF~~iLw~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li~LN~~~~~~EA~fR 245 (604)
T COG4178 166 LDLSFGLLQSVISLISFTGILWSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEADFR 245 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCcceEeecccccccchHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHH
Confidence 55566666666666655554431111 111 111111 12223444555555556666666666
Q ss_pred chHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhccCCCCC
Q 000720 1063 APILHHFSESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLI-ILVTLPRSAID 1141 (1333)
Q Consensus 1063 spl~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~ll~~~~~~~~~~-~~~~~~~~~~~ 1141 (1333)
..+. -.-+....|-.|+-|+...++..+..+.-.+.+......+.++...-...+-+.+.+-.+ ..-....|.++
T Consensus 246 ~~Lv----rv~enaE~IAly~GE~~Er~~l~~~f~~v~~n~~~l~~~~~~l~~~~~gy~~~s~v~P~li~ap~~f~g~i~ 321 (604)
T COG4178 246 YSLV----RVRENAEAIALYRGEKVERRRLDDRFDAVLGNWRRLVRAQIRLTWFQLGYGWLSVVLPILIAAPRYFSGQIT 321 (604)
T ss_pred HHHH----HHHhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHhccHhhhcCcCh
Confidence 5443 234556677888888877777776666665555555555544443333222222211111 11123346677
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhc------CCCCCCcccCCCCCCCCCCCcccEEEEEEEE
Q 000720 1142 PSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTN------IPSEAPLVIKNSRPSPEWPSSGKIELENLLV 1215 (1333)
Q Consensus 1142 ~g~~gl~l~y~l~l~~~l~~~v~~~~~le~~~~SveRI~~~~~------~p~E~~~~~~~~~~~~~wp~~G~I~f~nVsf 1215 (1333)
-|....+.+-..++...+.|++..+..+.+-.+++.|+.++.+ .++|.+.... .+-...--.+..|+|+|++.
T Consensus 322 ~G~lmqa~~aF~~v~sslswfi~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~nl~l 400 (604)
T COG4178 322 FGGLMQAVGAFGQVHSSLSWFIDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTG-RRIDFDDNADHGITLENLSL 400 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCcccccCccc-ccccccccccceeEEeeeeE
Confidence 7777777777777888899999999999999999999999863 2222211100 00000000146899999999
Q ss_pred EECCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCCCChHHHhhcCeEeccccccc
Q 000720 1216 QYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLF 1295 (1333)
Q Consensus 1216 ~Y~~~~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~i~l~~LRs~isiVpQdp~LF 1295 (1333)
.-+++. ..|++++|+++|||.+-|.|+||||||||+++|.|+++--+|+|.+-.- +++-++||.|++=
T Consensus 401 ~~p~~~-~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~-----------~~~lflpQ~PY~p 468 (604)
T COG4178 401 RTPDGQ-TLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPAD-----------SALLFLPQRPYLP 468 (604)
T ss_pred ECCCCC-eeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCC-----------CceEEecCCCCCC
Confidence 987766 5899999999999999999999999999999999999999999876411 3689999999999
Q ss_pred ccchhhhcC-CCC--CCCHHHHHHHHHhCCCCccc
Q 000720 1296 QGTVRTNLD-PLE--QHSDQEIWEVKISKLLTHKS 1327 (1333)
Q Consensus 1296 ~GTIR~NLd-p~~--~~sDeeI~~aL~~~~L~~~~ 1327 (1333)
.||+||=|. |.. +++|+|+.++|.+|+|.+-.
T Consensus 469 ~GtLre~l~YP~~~~~~~d~~l~~vL~~vgL~~L~ 503 (604)
T COG4178 469 QGTLREALCYPNAAPDFSDAELVAVLHKVGLGDLA 503 (604)
T ss_pred CccHHHHHhCCCCCCCCChHHHHHHHHHcCcHHHH
Confidence 999999996 553 38999999999999997653
No 412
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.88 E-value=6.1e-23 Score=237.61 Aligned_cols=201 Identities=21% Similarity=0.308 Sum_probs=161.9
Q ss_pred CccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEE-ECCeEEEEc
Q 000720 588 DVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIK-VHGKKAYVP 665 (1333)
Q Consensus 588 ~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~-~~g~iayv~ 665 (1333)
...|.++|++|.|+++ ..++++ ||-+..++.+++|||||+||||||+++.|++.|..|.+.. .+.++++-.
T Consensus 387 ~pvi~~~nv~F~y~~~-------~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~~~~y~ 459 (614)
T KOG0927|consen 387 PPVIMVQNVSFGYSDN-------PMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNKLPRYN 459 (614)
T ss_pred CCeEEEeccccCCCCc-------chhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccccccchhhh
Confidence 3579999999999876 267888 9999999999999999999999999999999999998632 234567777
Q ss_pred CCCC---CCCCCHHHHhc--cCCcCCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHHccCCC
Q 000720 666 QSSW---IQTGTIRENIL--FGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSD 740 (1333)
Q Consensus 666 Q~~~---i~~~Tv~enI~--~g~~~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ 740 (1333)
|+.. -...+.-|++. |......+..+.++..|+|..|.+.. ...+||+|||.||..||..+..|.
T Consensus 460 Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~----------p~~~LS~Gqr~rVlFa~l~~kqP~ 529 (614)
T KOG0927|consen 460 QHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVV----------PMSQLSDGQRRRVLFARLAVKQPH 529 (614)
T ss_pred hhhHhhcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCcccccc----------chhhcccccchhHHHHHHHhcCCc
Confidence 7642 34568888876 33334556778889999998776543 456999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeCCeEE-EccChHHHHh
Q 000720 741 VYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIE-QSGKYEDLIA 808 (1333)
Q Consensus 741 illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~-~~g~~~~l~~ 808 (1333)
+++|||||++||..+...+- +.++.. ..+||+||||..++.. |++|.+.+||.+. ..|++.....
T Consensus 530 lLlLDEPtnhLDi~tid~la-eaiNe~--~Ggvv~vSHDfrlI~qVaeEi~~c~~~~~~~~~G~i~~yk~ 596 (614)
T KOG0927|consen 530 LLLLDEPTNHLDIETIDALA-EAINEF--PGGVVLVSHDFRLISQVAEEIWVCENGTVTKWDGDIEIYKE 596 (614)
T ss_pred EEEecCCCcCCCchhHHHHH-HHHhcc--CCceeeeechhhHHHHHHHHhHhhccCceeecCccHHHHHH
Confidence 99999999999998865443 333322 4689999999999976 9999999998874 7788776644
No 413
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.88 E-value=3.4e-22 Score=218.12 Aligned_cols=154 Identities=23% Similarity=0.302 Sum_probs=118.9
Q ss_pred CeEeeCCcEEEEECCCCCChhHHHHHHh----CCCcCCCCcEE---------EECCeEEEEcCCC-C----C-CCCCHHH
Q 000720 617 KMKIMKGSKVAVCGSVGSGKSSLLSSIL----GEIPRISGAAI---------KVHGKKAYVPQSS-W----I-QTGTIRE 677 (1333)
Q Consensus 617 nl~i~~Ge~~~ivG~~GsGKSTLl~~il----G~~~~~~G~~i---------~~~g~iayv~Q~~-~----i-~~~Tv~e 677 (1333)
++++.+| +++|+||||||||||+++|. |..+|.+|++. .....+++++|++ + + .+.|+.|
T Consensus 17 ~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~~~~ 95 (204)
T cd03240 17 EIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSLAILE 95 (204)
T ss_pred EEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEhhHhh
Confidence 5777788 99999999999999999994 99988777431 0122578999987 2 1 1248999
Q ss_pred HhccCCcCCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHH------HHHHHHHccCCCEEEEeCCCCCC
Q 000720 678 NILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQR------IQLARAVYSNSDVYIFDDPFSAV 751 (1333)
Q Consensus 678 nI~~g~~~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqR------v~LARAl~~~~~illLDEP~saL 751 (1333)
|+.++. +...++.+ ++.+.+||+||||| +++|||+..+|+++++|||+++|
T Consensus 96 ~~~~~~---~~~~~~~~--------------------~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~L 152 (204)
T cd03240 96 NVIFCH---QGESNWPL--------------------LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNL 152 (204)
T ss_pred ceeeec---hHHHHHHH--------------------hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCcccc
Confidence 997752 11111111 35678999999996 78999999999999999999999
Q ss_pred CHHHHH-HHHHHHHHHHhC-CCeEEEecCchhhhhcCCEEEEEeC
Q 000720 752 DAHTGT-HLFKQCLMGLLS-QKTVLYTTHQLEFLDAADLVLVMKD 794 (1333)
Q Consensus 752 D~~~~~-~l~~~~~~~~~~-~~TvIlvtH~~~~l~~aD~i~vl~~ 794 (1333)
|+...+ .+.+.+.+...+ ++|+|++||+++.+..||+++.|++
T Consensus 153 D~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~~d~i~~l~~ 197 (204)
T cd03240 153 DEENIEESLAEIIEERKSQKNFQLIVITHDEELVDAADHIYRVEK 197 (204)
T ss_pred CHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhhCCEEEEEee
Confidence 999888 776644333333 7899999999998888999999953
No 414
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.87 E-value=1.5e-22 Score=202.02 Aligned_cols=173 Identities=22% Similarity=0.266 Sum_probs=128.1
Q ss_pred cccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEEC---------------------CeEEEEcCCC
Q 000720 611 TIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVH---------------------GKKAYVPQSS 668 (1333)
Q Consensus 611 ~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~---------------------g~iayv~Q~~ 668 (1333)
-|++++ +|+++.||++++-||+|+||||||+++-|.+.|++|++ .+. ..+|||+|--
T Consensus 24 LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I-~v~H~g~~vdl~~a~pr~vl~vRr~TiGyVSQFL 102 (235)
T COG4778 24 LPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQI-LVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQFL 102 (235)
T ss_pred eeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceE-EEEeCcchhhhhccChHHHHHHHHhhhHHHHHHH
Confidence 578999 99999999999999999999999999999999999987 332 1469999963
Q ss_pred -CCCCCCHHHHhc-----cCCcCCHH--HHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHHccCCC
Q 000720 669 -WIQTGTIRENIL-----FGKDMRQS--FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSD 740 (1333)
Q Consensus 669 -~i~~~Tv~enI~-----~g~~~~~~--~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ 740 (1333)
.++.-+..|-+. -|-+.+.. +-...+....+.+ ....-.+.+.|||+||||.|||.++.|-+
T Consensus 103 RviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlpe----------rLW~LaPaTFSGGEqQRVNIaRgfivd~p 172 (235)
T COG4778 103 RVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPE----------RLWSLAPATFSGGEQQRVNIARGFIVDYP 172 (235)
T ss_pred HhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCH----------HHhcCCCcccCCchheehhhhhhhhccCc
Confidence 344444333332 22222211 1122222222222 12234578999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeC
Q 000720 741 VYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKD 794 (1333)
Q Consensus 741 illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~ 794 (1333)
|+||||||++||+..+..+.+.+-+...+|..+|=+=||-+.-+. |||++-|..
T Consensus 173 ILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDeevre~vadR~~~~~~ 227 (235)
T COG4778 173 ILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEEVREAVADRLLDVSA 227 (235)
T ss_pred eEEecCCcccccccchHHHHHHHHHHHhcCceEEEeeccHHHHHHHhhheeeccc
Confidence 999999999999999877766443445578999999999877655 999988753
No 415
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.86 E-value=9.6e-22 Score=219.62 Aligned_cols=202 Identities=21% Similarity=0.330 Sum_probs=131.2
Q ss_pred cEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECCeEEEEcCCC
Q 000720 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSS 668 (1333)
Q Consensus 590 ~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g~iayv~Q~~ 668 (1333)
.|.++|-+.|-.. +...-+ ++.|-.|..+++|||||-||||||+-|..---...-.+ .+-||-|+.
T Consensus 264 DIKiEnF~ISA~G--------k~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnI-----DvLlCEQEv 330 (807)
T KOG0066|consen 264 DIKIENFDISAQG--------KLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNI-----DVLLCEQEV 330 (807)
T ss_pred cceeeeeeeeccc--------ceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCC-----ceEeeeeee
Confidence 4777776665432 345566 99999999999999999999999999986421111111 356788876
Q ss_pred CCCCCCHHHHhccC---------------------CcCCHHHHHHHHH---Hccc---chHHH-hh-cCCCccccC-CCC
Q 000720 669 WIQTGTIRENILFG---------------------KDMRQSFYEEVLE---GCAL---NQDIE-MW-ADGDLSVVG-ERG 718 (1333)
Q Consensus 669 ~i~~~Tv~enI~~g---------------------~~~~~~~~~~v~~---~~~l---~~d~~-~~-~~g~~t~ig-~~g 718 (1333)
...+.|.-+.|+-. .....++.+++.+ +.+- +.... .+ -.|-..+.. +..
T Consensus 331 vad~t~Ai~tvl~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGLGFskEMQ~rPt 410 (807)
T KOG0066|consen 331 VADSTSAIDTVLKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAGLGFSKEMQERPT 410 (807)
T ss_pred eecCcHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhcCCChhHhcCCc
Confidence 55555544444321 0001122222211 1110 00000 00 012222222 345
Q ss_pred CCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhc-CCEEEEEeCCeE
Q 000720 719 INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKI 797 (1333)
Q Consensus 719 ~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i 797 (1333)
..+|||.|.||+||||||.+|.++.|||||++||.....++ ++.+.++ .+|.++|+||-.|+.. |..|+.+++-++
T Consensus 411 ~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWL-dNYLQgW--kKTLLIVSHDQgFLD~VCtdIIHLD~qkL 487 (807)
T KOG0066|consen 411 TKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWL-DNYLQGW--KKTLLIVSHDQGFLDSVCTDIIHLDNQKL 487 (807)
T ss_pred cccCCceeeehhHHHHHhcCceeeeecCCccccccceeeeh-hhHHhhh--hheeEEEecccchHHHHHHHHhhhhhhhh
Confidence 68999999999999999999999999999999998654333 3333333 4899999999999976 999999999887
Q ss_pred E-EccChHHHH
Q 000720 798 E-QSGKYEDLI 807 (1333)
Q Consensus 798 ~-~~g~~~~l~ 807 (1333)
- +.|+|.-+.
T Consensus 488 hyYrGNY~~FK 498 (807)
T KOG0066|consen 488 HYYRGNYTLFK 498 (807)
T ss_pred hhhcchHHHHH
Confidence 4 677776543
No 416
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.86 E-value=2.3e-21 Score=213.53 Aligned_cols=160 Identities=16% Similarity=0.193 Sum_probs=110.4
Q ss_pred CCcEEEEECCCCCChhHHHHHHhCCC-cCCCCcEE-----------EECCeEEEEcCCCCCCCCCHHHHhccCCcCCHHH
Q 000720 622 KGSKVAVCGSVGSGKSSLLSSILGEI-PRISGAAI-----------KVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSF 689 (1333)
Q Consensus 622 ~Ge~~~ivG~~GsGKSTLl~~ilG~~-~~~~G~~i-----------~~~g~iayv~Q~~~i~~~Tv~enI~~g~~~~~~~ 689 (1333)
+|++++|+||||||||||+++|.+.+ -+..+... .....+++++|++.......| + . ..+.+.
T Consensus 27 ~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~~~~r-~---~-gl~~~~ 101 (213)
T cd03279 27 NNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGEDTAEVSFTFQLGGKKYRVER-S---R-GLDYDQ 101 (213)
T ss_pred ccCEEEEECCCCCCHHHHHHHheeeEecCccccccchhHHHHhcCCCccEEEEEEEEECCeEEEEEE-e---c-CCCHHH
Confidence 48899999999999999999999643 22222211 012357888887632211111 1 1 222222
Q ss_pred HHHHHHHcccchHHHhhcCC-CccccCCCCCCCChHHHHHHHHHHHHcc----------CCCEEEEeCCCCCCCHHHHHH
Q 000720 690 YEEVLEGCALNQDIEMWADG-DLSVVGERGINLSGGQKQRIQLARAVYS----------NSDVYIFDDPFSAVDAHTGTH 758 (1333)
Q Consensus 690 ~~~v~~~~~l~~d~~~~~~g-~~t~ig~~g~~LSGGQkqRv~LARAl~~----------~~~illLDEP~saLD~~~~~~ 758 (1333)
+.+.. . ++.+ ..+.++.++.+||||||||++||||++. +|++++|||||++||+...+.
T Consensus 102 ~~~~~---~-------l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~ 171 (213)
T cd03279 102 FTRIV---L-------LPQGEFDRFLARPVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEA 171 (213)
T ss_pred HHHhh---h-------hhhcchHHHhcCCccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHH
Confidence 22111 0 1112 1234467888999999999999999984 679999999999999999887
Q ss_pred HHHHHHHHHh-CCCeEEEecCchhhhhc-CCEEEEEeCCeE
Q 000720 759 LFKQCLMGLL-SQKTVLYTTHQLEFLDA-ADLVLVMKDGKI 797 (1333)
Q Consensus 759 l~~~~~~~~~-~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i 797 (1333)
+.+ .++.+. +++|+|++||+++++.. +|++++|++|..
T Consensus 172 ~~~-~l~~~~~~~~tii~itH~~~~~~~~~~~i~~~~~~~~ 211 (213)
T cd03279 172 VAT-ALELIRTENRMVGVISHVEELKERIPQRLEVIKTPGG 211 (213)
T ss_pred HHH-HHHHHHhCCCEEEEEECchHHHHhhCcEEEEEecCCC
Confidence 765 444444 47899999999998865 899999998853
No 417
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.85 E-value=2.3e-21 Score=218.13 Aligned_cols=79 Identities=29% Similarity=0.328 Sum_probs=67.8
Q ss_pred cCCCCCCCChHHHHHHHHHHHHc----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhcCCEE
Q 000720 714 VGERGINLSGGQKQRIQLARAVY----SNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLV 789 (1333)
Q Consensus 714 ig~~g~~LSGGQkqRv~LARAl~----~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~aD~i 789 (1333)
.++++.+||||||||++||||++ .+|+++++||||++||+...+.+.+. +..+.++.|+|++||+.+....||++
T Consensus 152 ~~~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~-l~~~~~~~~ii~~~h~~~~~~~~d~i 230 (243)
T cd03272 152 EQQEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANM-IKELSDGAQFITTTFRPELLEVADKF 230 (243)
T ss_pred ccccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHH-HHHHhCCCEEEEEecCHHHHhhCCEE
Confidence 45788999999999999999996 36899999999999999998888764 44555578889999998777789999
Q ss_pred EEEe
Q 000720 790 LVMK 793 (1333)
Q Consensus 790 ~vl~ 793 (1333)
++|+
T Consensus 231 ~~l~ 234 (243)
T cd03272 231 YGVK 234 (243)
T ss_pred EEEE
Confidence 9995
No 418
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.85 E-value=3.6e-21 Score=217.46 Aligned_cols=172 Identities=20% Similarity=0.256 Sum_probs=123.2
Q ss_pred CcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEE----------------CCeEEEEcCCCC----------CCCCCHH
Q 000720 623 GSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKV----------------HGKKAYVPQSSW----------IQTGTIR 676 (1333)
Q Consensus 623 Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~----------------~g~iayv~Q~~~----------i~~~Tv~ 676 (1333)
..+++|+||||||||||+++|.+.+.+..|+.+.. ..++++++|++- .+..||.
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV~ 104 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITVT 104 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEEE
Confidence 55999999999999999999999987653311111 126789999852 1245888
Q ss_pred HHhccCCc----C-----CHHHHHHHHHHcccchH----------HHhhcCCCccccCCCCCCCChHHHHHHHHHHHHc-
Q 000720 677 ENILFGKD----M-----RQSFYEEVLEGCALNQD----------IEMWADGDLSVVGERGINLSGGQKQRIQLARAVY- 736 (1333)
Q Consensus 677 enI~~g~~----~-----~~~~~~~v~~~~~l~~d----------~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~- 736 (1333)
+|+..+.. . ..+...+.++.+++..| ++.+-.. ....+.++.+||||||||++||||++
T Consensus 105 r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~-~~~~~~~~~~lS~G~~qr~~la~al~~ 183 (251)
T cd03273 105 RQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNM-GGVWKESLTELSGGQRSLVALSLILAL 183 (251)
T ss_pred EEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHh-HHhhcccccccCHHHHHHHHHHHHHHH
Confidence 88866532 1 12344455565555311 1110000 02334678899999999999999997
Q ss_pred ---cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhcCCEEEEEe--CCe
Q 000720 737 ---SNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMK--DGK 796 (1333)
Q Consensus 737 ---~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~aD~i~vl~--~G~ 796 (1333)
.+|+++++||||++||+...+++.+. ++...+|.|+|++||+.+.++.||+++-+. ||.
T Consensus 184 ~~~~~~~illlDEPt~~ld~~~~~~~~~~-l~~~~~g~~ii~iSH~~~~~~~~d~v~~~~~~~~~ 247 (251)
T cd03273 184 LLFKPAPMYILDEVDAALDLSHTQNIGRM-IKTHFKGSQFIVVSLKEGMFNNANVLFRTRFVDGT 247 (251)
T ss_pred hhccCCCEEEEeCCCcCCCHHHHHHHHHH-HHHHcCCCEEEEEECCHHHHHhCCEEEEEEeeCCE
Confidence 57899999999999999998888764 444556889999999988888899998875 553
No 419
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.85 E-value=1.3e-20 Score=242.26 Aligned_cols=98 Identities=26% Similarity=0.440 Sum_probs=87.0
Q ss_pred cCCCCCCCChHHHHHHHHHHHHccCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhcCCEEE
Q 000720 714 VGERGINLSGGQKQRIQLARAVYSNS---DVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVL 790 (1333)
Q Consensus 714 ig~~g~~LSGGQkqRv~LARAl~~~~---~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~aD~i~ 790 (1333)
.+++..+||||||||+.|||+|.++| ++|||||||++||++....+.+.+.+...+|+|||++||+++.+..||+|+
T Consensus 824 l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~~i~~aD~ii 903 (943)
T PRK00349 824 LGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLDVIKTADWII 903 (943)
T ss_pred ccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEE
Confidence 57788999999999999999999999 999999999999999988887654333346899999999999998899999
Q ss_pred EE------eCCeEEEccChHHHHhhcc
Q 000720 791 VM------KDGKIEQSGKYEDLIADQN 811 (1333)
Q Consensus 791 vl------~~G~i~~~g~~~~l~~~~~ 811 (1333)
.| ++|+|++.|+++++.++..
T Consensus 904 ~Lgp~~G~~~G~Iv~~Gt~~el~~~~~ 930 (943)
T PRK00349 904 DLGPEGGDGGGEIVATGTPEEVAKVEA 930 (943)
T ss_pred EecCCcCCCCCEEEEeCCHHHHHhCcc
Confidence 99 7999999999999986443
No 420
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.85 E-value=1e-20 Score=224.14 Aligned_cols=186 Identities=25% Similarity=0.410 Sum_probs=144.9
Q ss_pred cccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECCe--------------EEEEcCCC----CCCCC
Q 000720 613 KLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK--------------KAYVPQSS----WIQTG 673 (1333)
Q Consensus 613 ~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g~--------------iayv~Q~~----~i~~~ 673 (1333)
.++| +|++.+||+++|.|-.|||+|-|+++|.|.-++.+|++ .++|+ ++|||.|- .+...
T Consensus 274 ~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i-~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~ 352 (500)
T COG1129 274 KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEI-LLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDM 352 (500)
T ss_pred ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceE-EECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCC
Confidence 3667 99999999999999999999999999999888888986 88875 69999874 45678
Q ss_pred CHHHHhccCC--c------CCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEe
Q 000720 674 TIRENILFGK--D------MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFD 745 (1333)
Q Consensus 674 Tv~enI~~g~--~------~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLD 745 (1333)
+|++||.+.. . .+..+-++..+ ....++..-.. -......+||||.+|||.|||.|+.+|+++|||
T Consensus 353 sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~--~~~~~l~Ik~~----s~~~~v~~LSGGNQQKVvlarwL~~~p~vLilD 426 (500)
T COG1129 353 SIAENITLASLRRFSRRGLIDRRKERALAE--RYIRRLRIKTP----SPEQPIGTLSGGNQQKVVLARWLATDPKVLILD 426 (500)
T ss_pred cHHHheehHhhhhhccccccChHHHHHHHH--HHHHhcCcccC----CccchhhcCCchhhhhHHHHHHHhcCCCEEEEC
Confidence 9999998761 1 11111111111 11111111111 123567899999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhh-hcCCEEEEEeCCeEEEccChHH
Q 000720 746 DPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFL-DAADLVLVMKDGKIEQSGKYED 805 (1333)
Q Consensus 746 EP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l-~~aD~i~vl~~G~i~~~g~~~~ 805 (1333)
|||-|+|.-+..++++.+.+...+|++||++|-++.++ ..||||+||++|+|+..-+.++
T Consensus 427 EPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~DRIlVm~~Gri~~e~~~~~ 487 (500)
T COG1129 427 EPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRILVMREGRIVGELDREE 487 (500)
T ss_pred CCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECCEEEEEecccc
Confidence 99999999999999986555667899999999999876 4699999999999987544433
No 421
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.84 E-value=5.8e-21 Score=209.52 Aligned_cols=118 Identities=58% Similarity=0.977 Sum_probs=109.0
Q ss_pred CCCcccEEEEEEEEEECCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCCCChHHH
Q 000720 1202 WPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDL 1281 (1333)
Q Consensus 1202 wp~~G~I~f~nVsf~Y~~~~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~i~l~~L 1281 (1333)
||..+.|+++|++++|+....++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.+.+..++
T Consensus 1 ~~~~~~l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~ 80 (207)
T cd03369 1 WPEHGEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDL 80 (207)
T ss_pred CCCCCeEEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHH
Confidence 89999999999999996533359999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCeEecccccccccchhhhcCCCCCCCHHHHHHHHH
Q 000720 1282 RSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVKI 1319 (1333)
Q Consensus 1282 Rs~isiVpQdp~LF~GTIR~NLdp~~~~sDeeI~~aL~ 1319 (1333)
|++++++||+|.+|++|+++|+..+...+++++.++++
T Consensus 81 ~~~i~~v~q~~~~~~~tv~~~l~~~~~~~~~~~~~~l~ 118 (207)
T cd03369 81 RSSLTIIPQDPTLFSGTIRSNLDPFDEYSDEEIYGALR 118 (207)
T ss_pred HhhEEEEecCCcccCccHHHHhcccCCCCHHHHHHHhh
Confidence 99999999999999999999998766667777777776
No 422
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.84 E-value=9.7e-22 Score=196.92 Aligned_cols=183 Identities=23% Similarity=0.362 Sum_probs=142.9
Q ss_pred ccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECCe-------------EEEEcCCC-CCCCCCHHHH
Q 000720 614 LTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK-------------KAYVPQSS-WIQTGTIREN 678 (1333)
Q Consensus 614 L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g~-------------iayv~Q~~-~i~~~Tv~en 678 (1333)
|-. +.++..||+.-++|||||||||||..++|..+ -+|++ .+.|. -+|.+|+. -.|.+.|...
T Consensus 15 L~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~-~sGsi-~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~~Y 92 (248)
T COG4138 15 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-GSGSI-QFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVWHY 92 (248)
T ss_pred ccccccccccceEEEEECCCCccHHHHHHHHhCCCC-CCceE-EECCcchhHHhHhHHHHHHHHHhhccCCcchhhhhhh
Confidence 444 77899999999999999999999999999875 58886 78774 38999864 4567788888
Q ss_pred hccCCcCCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHHcc-------CCCEEEEeCCCCCC
Q 000720 679 ILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYS-------NSDVYIFDDPFSAV 751 (1333)
Q Consensus 679 I~~g~~~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~-------~~~illLDEP~saL 751 (1333)
+....|- +++-.++-+.|.+ +. .....|+...+||||+-|||-||-...+ +.+++|+|||.++|
T Consensus 93 L~L~qP~-~~~a~~i~~i~~~------L~--l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~L 163 (248)
T COG4138 93 LTLHQPD-KTRTELLNDVAGA------LA--LDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSL 163 (248)
T ss_pred hhhcCch-HHHHHHHHHHHhh------hc--ccchhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcch
Confidence 8876653 3333332222321 11 1224567788999999999999988775 45799999999999
Q ss_pred CHHHHHHHHHHHHHHH-hCCCeEEEecCchh-hhhcCCEEEEEeCCeEEEccChHHHHh
Q 000720 752 DAHTGTHLFKQCLMGL-LSQKTVLYTTHQLE-FLDAADLVLVMKDGKIEQSGKYEDLIA 808 (1333)
Q Consensus 752 D~~~~~~l~~~~~~~~-~~~~TvIlvtH~~~-~l~~aD~i~vl~~G~i~~~g~~~~l~~ 808 (1333)
|...... .+.++... ..|.|||+..||++ .+..||++..++.|++...|..+|++.
T Consensus 164 DvAQ~~a-Ldrll~~~c~~G~~vims~HDLNhTLrhA~~~wLL~rG~l~~~G~~~eVlt 221 (248)
T COG4138 164 DVAQQSA-LDRLLSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEVLT 221 (248)
T ss_pred hHHHHHH-HHHHHHHHHhCCcEEEEeccchhhHHHHHHHHHHHhcCeEEeecchhhhcC
Confidence 9976554 45555544 46899999999996 589999999999999999999999986
No 423
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.84 E-value=4.2e-21 Score=216.22 Aligned_cols=167 Identities=20% Similarity=0.201 Sum_probs=118.5
Q ss_pred EEEEECCCCCChhHHHHHHhCCCcCCCCcEEEEC--------C------------eEEEEcCCCC--CCCCCHHHHhc--
Q 000720 625 KVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVH--------G------------KKAYVPQSSW--IQTGTIRENIL-- 680 (1333)
Q Consensus 625 ~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~--------g------------~iayv~Q~~~--i~~~Tv~enI~-- 680 (1333)
+++|+||||||||||+.+|.+.+.+..|+. ... + .+.|..|++- +...++++.-.
T Consensus 24 ~~~i~G~NGsGKStll~ai~~~l~~~~~~~-r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~~~~ 102 (247)
T cd03275 24 FTCIIGPNGSGKSNLMDAISFVLGEKSSHL-RSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRIITGGSSSY 102 (247)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCcccc-cccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEEECCceEE
Confidence 999999999999999999998876654432 110 1 1234444321 12223332211
Q ss_pred --cCCcCCHHHHHHHHHHcccchHHHh--hcCCCccccC---------CCCCCCChHHHHHHHHHHHHccC----CCEEE
Q 000720 681 --FGKDMRQSFYEEVLEGCALNQDIEM--WADGDLSVVG---------ERGINLSGGQKQRIQLARAVYSN----SDVYI 743 (1333)
Q Consensus 681 --~g~~~~~~~~~~v~~~~~l~~d~~~--~~~g~~t~ig---------~~g~~LSGGQkqRv~LARAl~~~----~~ill 743 (1333)
-+.+.....+++.++.|++..+... .++|+.+.+. +++.+||||||||++||||++.+ |+++|
T Consensus 103 ~ingk~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~~~~~~p~~ll 182 (247)
T cd03275 103 RINGKVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAIHSYQPAPFFV 182 (247)
T ss_pred EECCEEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHHhccCCCCEEE
Confidence 1345566778888898888654222 2345444442 23489999999999999999764 99999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEecCchhhhhcCCEEEEEe
Q 000720 744 FDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDAADLVLVMK 793 (1333)
Q Consensus 744 LDEP~saLD~~~~~~l~~~~~~~~~-~~~TvIlvtH~~~~l~~aD~i~vl~ 793 (1333)
|||||++||+.....+.+. +.... +|.|+|+|||+.+.+..||++++|.
T Consensus 183 lDEPt~~LD~~~~~~l~~~-i~~~~~~g~~vi~isH~~~~~~~~d~i~~~~ 232 (247)
T cd03275 183 LDEVDAALDNTNVGKVASY-IREQAGPNFQFIVISLKEEFFSKADALVGVY 232 (247)
T ss_pred EecccccCCHHHHHHHHHH-HHHhccCCcEEEEEECCHHHHhhCCeEEEEE
Confidence 9999999999998888764 44443 4789999999999888899999985
No 424
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.84 E-value=2.4e-20 Score=211.59 Aligned_cols=183 Identities=22% Similarity=0.384 Sum_probs=136.3
Q ss_pred eeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECCeEEEEcCCC-CCCC
Q 000720 595 AGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSS-WIQT 672 (1333)
Q Consensus 595 ~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g~iayv~Q~~-~i~~ 672 (1333)
+.-++|++-...+ ..+.|.. .=++..||+++++||||-||||+.+.|+|.++|++|+ ..+-+++|=||.- .-++
T Consensus 340 ~~lv~y~~~~k~~--g~F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~--~~~~~vSyKPQyI~~~~~ 415 (591)
T COG1245 340 DTLVEYPDLKKTY--GDFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS--EEDLKVSYKPQYISPDYD 415 (591)
T ss_pred ceeeecchheeec--CceEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC--CccceEeecceeecCCCC
Confidence 4556776431111 1244444 4456788899999999999999999999999999997 4456799999963 3489
Q ss_pred CCHHHHhccCCc--CCHHHHH-HHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCC
Q 000720 673 GTIRENILFGKD--MRQSFYE-EVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFS 749 (1333)
Q Consensus 673 ~Tv~enI~~g~~--~~~~~~~-~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDEP~s 749 (1333)
+||++-+.-..+ +...+|+ ++.+-..++ ..+.++..+||||+.|||++|.||.+++|+||||||.+
T Consensus 416 gtV~~~l~~~~~~~~~~s~~~~ei~~pl~l~-----------~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA 484 (591)
T COG1245 416 GTVEDLLRSAIRSAFGSSYFKTEIVKPLNLE-----------DLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSA 484 (591)
T ss_pred CcHHHHHHHhhhhhcccchhHHhhcCccchH-----------HHHhcccccCCchhHHHHHHHHHhccccCEEEecCchh
Confidence 999998764322 3333333 333333332 22335678999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHh--CCCeEEEecCchhhhhc-CCEEEEEe
Q 000720 750 AVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLDA-ADLVLVMK 793 (1333)
Q Consensus 750 aLD~~~~~~l~~~~~~~~~--~~~TvIlvtH~~~~l~~-aD~i~vl~ 793 (1333)
.||.+.+. +..+.++... +++|.++|.||+-.+.+ +|+++|.+
T Consensus 485 ~LDvEqR~-~vakvIRR~~e~~~kta~vVdHDi~~~dyvsDr~ivF~ 530 (591)
T COG1245 485 YLDVEQRI-IVAKVIRRFIENNEKTALVVDHDIYMIDYVSDRLIVFE 530 (591)
T ss_pred hccHHHHH-HHHHHHHHHHhhcCceEEEEecceehhhhhhceEEEEe
Confidence 99997654 4445665543 46899999999999987 99999986
No 425
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.83 E-value=1.4e-20 Score=208.77 Aligned_cols=122 Identities=57% Similarity=0.930 Sum_probs=112.9
Q ss_pred ccEEEEEEEEEECCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCCCChHHHhhcC
Q 000720 1206 GKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRL 1285 (1333)
Q Consensus 1206 G~I~f~nVsf~Y~~~~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~i~l~~LRs~i 1285 (1333)
|+|+++|++++|+.+..++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.+.+...+|+++
T Consensus 1 ~~l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (221)
T cd03244 1 GDIEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRI 80 (221)
T ss_pred CcEEEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhE
Confidence 57999999999975444599999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEecccccccccchhhhcCCCCCCCHHHHHHHHHhCCCCccc
Q 000720 1286 SIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVKISKLLTHKS 1327 (1333)
Q Consensus 1286 siVpQdp~LF~GTIR~NLdp~~~~sDeeI~~aL~~~~L~~~~ 1327 (1333)
+++||+|.+|++|+++||+++...+++++.++++..++.+..
T Consensus 81 ~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~ 122 (221)
T cd03244 81 SIIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFV 122 (221)
T ss_pred EEECCCCccccchHHHHhCcCCCCCHHHHHHHHHHhCcHHHH
Confidence 999999999999999999987777888999999999886543
No 426
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.83 E-value=4e-21 Score=196.26 Aligned_cols=123 Identities=28% Similarity=0.440 Sum_probs=109.0
Q ss_pred EEEEEEEEEECCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCCCChHH---Hhhc
Q 000720 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQD---LRSR 1284 (1333)
Q Consensus 1208 I~f~nVsf~Y~~~~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~i~l~~---LRs~ 1284 (1333)
|+|+||+.+|+.+ +++|+||||+|++||.+=++|+|||||||++++|++...|+.|+|.++|.|++.+.-++ ||++
T Consensus 2 I~f~~V~k~Y~~g-~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~ 80 (223)
T COG2884 2 IRFENVSKAYPGG-REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQ 80 (223)
T ss_pred eeehhhhhhcCCC-chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhhe
Confidence 8999999999877 67999999999999999999999999999999999999999999999999999988665 6999
Q ss_pred CeEeccccccc-ccchhhhcC-CCC--CCC----HHHHHHHHHhCCCCcccccCC
Q 000720 1285 LSIIPQDPMLF-QGTVRTNLD-PLE--QHS----DQEIWEVKISKLLTHKSYQCE 1331 (1333)
Q Consensus 1285 isiVpQdp~LF-~GTIR~NLd-p~~--~~s----DeeI~~aL~~~~L~~~~~~~~ 1331 (1333)
||+|.||--|. +-|+.||+. |.. ..+ .+.+.++|+.+||+++..+.|
T Consensus 81 IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP 135 (223)
T COG2884 81 IGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALP 135 (223)
T ss_pred eeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCc
Confidence 99999999876 559999996 432 122 356889999999999877665
No 427
>PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A.
Probab=99.83 E-value=7.5e-18 Score=189.96 Aligned_cols=220 Identities=19% Similarity=0.281 Sum_probs=192.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCcchhHHHHhccHHHHHhHHHHHHHHHHHHHHHHHHH
Q 000720 939 GSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSI 1018 (1333)
Q Consensus 939 ~~~i~~~~~~~~~~~~~~~~s~~L~~~ll~~il~ap~~fFd~tp~GrIlnRfs~Di~~vd~~l~~~l~~~~~~~~~~l~~ 1018 (1333)
+...+.....+...+.+.+...++++++++++++.|.+||+++++|+++||+++|++.+++.+...+..++..++..++.
T Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~l~~~i~~d~~~i~~~~~~~~~~~~~~~~~~i~~ 132 (275)
T PF00664_consen 53 LIFLFSYIYFYLSSRISQRIRKDLRKRLFEKLLRLPYSYFDKNSSGELLSRITNDIEQIENFLSSSLFQIISSIISIIFS 132 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccccccccccccccccccccccccccccccchhhhh
Confidence 34444444555567889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHH
Q 000720 1019 IILMSQAAWQVFPLFLVILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFLLRSHSLIDD 1098 (1333)
Q Consensus 1019 ivv~~~~~~~l~lv~ipl~~~~~~~~~~y~~~srel~rl~~~~~spl~~~~~Etl~G~~tIRaf~~e~~f~~~~~~~~d~ 1098 (1333)
+++++..+|+++++++...+++..+..++.+..++..+...+..++..+++.|.++|+++||+|+.|+++.+++.+..++
T Consensus 133 ~~~~~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~ 212 (275)
T PF00664_consen 133 LILLFFISWKLALILLIILPLLFLISFIFSKKIRKLSKKYQEANSELNSFLSESLSGIRTIKAFGAEDYFLERFNKALEK 212 (275)
T ss_dssp HHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred hhcccccccccccccchhhhhhHhhhhhhccccccccccccccccccccccccchhhhHHHHHHHhhHHHHHHHHHHHHH
Confidence 99999999999999998889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h-ccCCCCChHHHHHHHHHHHHHHHH
Q 000720 1099 YSCVTFHNCGTMEWLCLRINLLFNFAFFLVLIILV-T-LPRSAIDPSLAGLAATYGLNLNVL 1158 (1333)
Q Consensus 1099 ~~~~~~~~~~~~~wl~~rl~ll~~~~~~~~~~~~~-~-~~~~~~~~g~~gl~l~y~l~l~~~ 1158 (1333)
..+...+....+.|.....+++..+...++..++. . ...+..++|.....+.|...+..+
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~s~g~~~~~~~~~~~~~~p 274 (275)
T PF00664_consen 213 YRKASFKYAKIQALLSSISQFISYLSIVLILIFGAYLSVINGQISIGTLVAFLSLSSQLINP 274 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHhh
Confidence 99999999999999999888888875555544443 3 456778888877777776665543
No 428
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.82 E-value=3.8e-20 Score=209.85 Aligned_cols=122 Identities=46% Similarity=0.748 Sum_probs=111.1
Q ss_pred CcccEEEEEEEEEECCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCCCChHHHhh
Q 000720 1204 SSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRS 1283 (1333)
Q Consensus 1204 ~~G~I~f~nVsf~Y~~~~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~i~l~~LRs 1283 (1333)
..|.|+++|++++|+.....+|+|+||+|+|||.+||+|++|||||||+++|.|+++|++|+|.+||.++.+.+..++|+
T Consensus 16 ~~~~i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~ 95 (257)
T cd03288 16 LGGEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRS 95 (257)
T ss_pred CCceEEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhh
Confidence 46899999999999654345999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCeEecccccccccchhhhcCCCCCCCHHHHHHHHHhCCCCc
Q 000720 1284 RLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVKISKLLTH 1325 (1333)
Q Consensus 1284 ~isiVpQdp~LF~GTIR~NLdp~~~~sDeeI~~aL~~~~L~~ 1325 (1333)
+++++||+|.+|++|+++|+++.....+++++++++.+++.+
T Consensus 96 ~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~l~~~~l~~ 137 (257)
T cd03288 96 RLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKN 137 (257)
T ss_pred hEEEECCCCcccccHHHHhcCcCCCCCHHHHHHHHHHhCcHH
Confidence 999999999999999999998765556778888888877754
No 429
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.82 E-value=1.9e-20 Score=237.01 Aligned_cols=188 Identities=26% Similarity=0.370 Sum_probs=150.6
Q ss_pred CcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCc--CCCCcEEEECC----------eEEEEcCCC-CCCCCCH
Q 000720 610 PTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP--RISGAAIKVHG----------KKAYVPQSS-WIQTGTI 675 (1333)
Q Consensus 610 ~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~--~~~G~~i~~~g----------~iayv~Q~~-~i~~~Tv 675 (1333)
....|+| +=-++||.++|++|++||||||||+.|+|-.. ..+|.+ .++| .+|||.|+. ++...||
T Consensus 803 ~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi-~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~TV 881 (1391)
T KOG0065|consen 803 TRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDI-LISGFPKDQETFARVSGYVEQQDIHSPELTV 881 (1391)
T ss_pred ceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEE-EECCeeCchhhhccccceeecccccCcccch
Confidence 4567888 88899999999999999999999999999642 234443 5555 469999975 6888999
Q ss_pred HHHhccCCcC-------CHHH---HHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHHccCC-CEEEE
Q 000720 676 RENILFGKDM-------RQSF---YEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNS-DVYIF 744 (1333)
Q Consensus 676 ~enI~~g~~~-------~~~~---~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~-~illL 744 (1333)
||-+.|.... ++++ .++|++-.+|+ .-.+..||..|.-||..||+|+.||--|..+| -|++|
T Consensus 882 rESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~-------~~~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~ilFL 954 (1391)
T KOG0065|consen 882 RESLRFSAALRLPKEVSDEEKYEYVEEVIELLELK-------EYADALVGLPGSGLSTEQRKRLTIGVELVANPSSILFL 954 (1391)
T ss_pred HHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCch-------hhhhhhccCCCCCCCHHHhceeeEEEEEecCCceeEEe
Confidence 9999985321 2233 34455544433 12345789999999999999999999999999 89999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhh--hhcCCEEEEEe-CCeEEEccChHH
Q 000720 745 DDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEF--LDAADLVLVMK-DGKIEQSGKYED 805 (1333)
Q Consensus 745 DEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~--l~~aD~i~vl~-~G~i~~~g~~~~ 805 (1333)
||||||||+.++..+++.+.+....|+||+.+-||++- .+..|+++.|+ +|+.++.|+..+
T Consensus 955 DEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~ 1018 (1391)
T KOG0065|consen 955 DEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGE 1018 (1391)
T ss_pred cCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCccc
Confidence 99999999999888887655566789999999999964 57899999995 789999998765
No 430
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.82 E-value=1.6e-19 Score=232.07 Aligned_cols=93 Identities=28% Similarity=0.472 Sum_probs=82.9
Q ss_pred cCCCCCCCChHHHHHHHHHHHHcc---CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhcCCEEE
Q 000720 714 VGERGINLSGGQKQRIQLARAVYS---NSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVL 790 (1333)
Q Consensus 714 ig~~g~~LSGGQkqRv~LARAl~~---~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~aD~i~ 790 (1333)
.+++..+||||||||+.|||++.+ +|++|+|||||++||+...+.+.+.+.+...+|+|+|++||+++.+..||+|+
T Consensus 822 l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~~i~~aD~ii 901 (924)
T TIGR00630 822 LGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLDVIKTADYII 901 (924)
T ss_pred hcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEE
Confidence 578889999999999999999997 59999999999999999988887654443446899999999999998899999
Q ss_pred EE------eCCeEEEccChHHH
Q 000720 791 VM------KDGKIEQSGKYEDL 806 (1333)
Q Consensus 791 vl------~~G~i~~~g~~~~l 806 (1333)
+| ++|+|++.|+++++
T Consensus 902 ~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 902 DLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred EecCCccCCCCEEEEeCCHHHh
Confidence 99 79999999998875
No 431
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.82 E-value=2e-20 Score=194.53 Aligned_cols=123 Identities=26% Similarity=0.362 Sum_probs=109.7
Q ss_pred ccEEEEEEEEEECCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCC-----CeEEEcCEeCCC--CCh
Q 000720 1206 GKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSG-----GRILIDGVDISM--IGL 1278 (1333)
Q Consensus 1206 G~I~f~nVsf~Y~~~~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~-----G~I~IDGvdI~~--i~l 1278 (1333)
..++++|+++-|.. ..||+|||++|++++.+|++|||||||||++.+|-|+.|..+ |+|.+||.||.+ ++.
T Consensus 6 ~~~~~~~l~~yYg~--~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~ 83 (253)
T COG1117 6 PAIEVRDLNLYYGD--KHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDV 83 (253)
T ss_pred ceeEecceeEEECc--hhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCH
Confidence 36899999999974 359999999999999999999999999999999999999876 999999999987 579
Q ss_pred HHHhhcCeEecccccccccchhhhcCCCC-------CCCHHHHHHHHHhCCCCcccccC
Q 000720 1279 QDLRSRLSIIPQDPMLFQGTVRTNLDPLE-------QHSDQEIWEVKISKLLTHKSYQC 1330 (1333)
Q Consensus 1279 ~~LRs~isiVpQdp~LF~GTIR~NLdp~~-------~~sDeeI~~aL~~~~L~~~~~~~ 1330 (1333)
-.||+++|+|.|.|.-|..||+||+..+. ..-||-+.++|+++.|||.|.+-
T Consensus 84 ~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDr 142 (253)
T COG1117 84 VELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDR 142 (253)
T ss_pred HHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHH
Confidence 99999999999999999999999997542 12255688899999999998763
No 432
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.81 E-value=2.8e-20 Score=204.06 Aligned_cols=161 Identities=17% Similarity=0.138 Sum_probs=110.2
Q ss_pred cEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECCeEEEEcCCCCCC-CCCHHHHhccCCcCCHHHHHHHHHHccc---
Q 000720 624 SKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQ-TGTIRENILFGKDMRQSFYEEVLEGCAL--- 699 (1333)
Q Consensus 624 e~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g~iayv~Q~~~i~-~~Tv~enI~~g~~~~~~~~~~v~~~~~l--- 699 (1333)
++++|+|||||||||++++|.-..-..... ...++++|++|+.... +.|++++..+-...... +.++..+.
T Consensus 26 ~i~~ivGpNGaGKSTll~~i~~~~G~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~~g~~~~ 100 (212)
T cd03274 26 SFSAIVGPNGSGKSNVIDSMLFVFGFRASK--MRQKKLSDLIHNSAGHPNLDSCSVEVHFQEIIDK---PLLKSKGIDLD 100 (212)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhccCHHH--hhhhhHHHHhcCCCCCCCCceEEEEEEEEeCCCH---HHHHHCCcCCC
Confidence 899999999999999999998211000001 1124688999987543 45788877654332110 01100000
Q ss_pred ----------chHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHHcc----CCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 000720 700 ----------NQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYS----NSDVYIFDDPFSAVDAHTGTHLFKQCLM 765 (1333)
Q Consensus 700 ----------~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~----~~~illLDEP~saLD~~~~~~l~~~~~~ 765 (1333)
..++..++++ ...+...||+|||||++||||++. +|++++|||||++||++....+.+ .++
T Consensus 101 ~~~~~v~~~~~~~~~~L~~~----~~~~~~~lS~G~~~r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~-~l~ 175 (212)
T cd03274 101 HNRFLILQGEVEQIAQMPKK----SWKNISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVAN-YIK 175 (212)
T ss_pred CCceEEcCCcEEEeeccccc----cccchhhcCHHHHHHHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHH-HHH
Confidence 0111222222 234567999999999999999974 589999999999999998876665 455
Q ss_pred HHhCCCeEEEecCchhhhhcCCEEEEEeC
Q 000720 766 GLLSQKTVLYTTHQLEFLDAADLVLVMKD 794 (1333)
Q Consensus 766 ~~~~~~TvIlvtH~~~~l~~aD~i~vl~~ 794 (1333)
...++.|+|++||+.+....||++++|..
T Consensus 176 ~~~~~~~~iivs~~~~~~~~~d~v~~~~~ 204 (212)
T cd03274 176 ERTKNAQFIVISLRNNMFELADRLVGIYK 204 (212)
T ss_pred HHcCCCEEEEEECcHHHHHhCCEEEEEEe
Confidence 56667899999999877778999999963
No 433
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.81 E-value=3.7e-20 Score=193.67 Aligned_cols=123 Identities=30% Similarity=0.451 Sum_probs=105.4
Q ss_pred cEEEEEEEEEECCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCC-CCChHHHhhcC
Q 000720 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDIS-MIGLQDLRSRL 1285 (1333)
Q Consensus 1207 ~I~f~nVsf~Y~~~~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~-~i~l~~LRs~i 1285 (1333)
-|+++||+.+|... .||||||++|++||.|.|+||||||||||+.+|.++-+|++|+|.|||.++. +.++..+|+++
T Consensus 2 mi~i~~l~K~fg~~--~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~v 79 (240)
T COG1126 2 MIEIKNLSKSFGDK--EVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKV 79 (240)
T ss_pred eEEEEeeeEEeCCe--EEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhc
Confidence 48999999999754 4999999999999999999999999999999999999999999999998874 34899999999
Q ss_pred eEeccccccccc-chhhhcC--CC--CCC----CHHHHHHHHHhCCCCcccccCC
Q 000720 1286 SIIPQDPMLFQG-TVRTNLD--PL--EQH----SDQEIWEVKISKLLTHKSYQCE 1331 (1333)
Q Consensus 1286 siVpQdp~LF~G-TIR~NLd--p~--~~~----sDeeI~~aL~~~~L~~~~~~~~ 1331 (1333)
|+|+|..-||+- |+-+|+. |- ..- ..+.-.+-|+++||.++..+-|
T Consensus 80 GmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP 134 (240)
T COG1126 80 GMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYP 134 (240)
T ss_pred CeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCc
Confidence 999999999965 9999995 31 112 2344567799999998866554
No 434
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.81 E-value=2.9e-20 Score=197.81 Aligned_cols=119 Identities=30% Similarity=0.433 Sum_probs=106.4
Q ss_pred EEEEEEEEEECCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCCCChHHHhhcCeE
Q 000720 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1287 (1333)
Q Consensus 1208 I~f~nVsf~Y~~~~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~i~l~~LRs~isi 1287 (1333)
|+|+||+++|.+ ..+++|+||+|++||.+.++|+|||||||+++++.|++||++|+|+|||.||++++...||++|||
T Consensus 2 I~~~nvsk~y~~--~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGY 79 (309)
T COG1125 2 IEFENVSKRYGN--KKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGY 79 (309)
T ss_pred ceeeeeehhcCC--ceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhh
Confidence 799999999973 359999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccccccc-cchhhhcC--CC-C----CCCHHHHHHHHHhCCCCcccc
Q 000720 1288 IPQDPMLFQ-GTVRTNLD--PL-E----QHSDQEIWEVKISKLLTHKSY 1328 (1333)
Q Consensus 1288 VpQdp~LF~-GTIR~NLd--p~-~----~~sDeeI~~aL~~~~L~~~~~ 1328 (1333)
|-|.--||. -||.+||. |. . +.-++.+.|-|+.+||....+
T Consensus 80 viQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~ 128 (309)
T COG1125 80 VIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEY 128 (309)
T ss_pred hhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence 999999995 59999996 32 1 223566888999999976533
No 435
>PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A.
Probab=99.81 E-value=1.7e-16 Score=178.85 Aligned_cols=268 Identities=18% Similarity=0.240 Sum_probs=204.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000720 278 ALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSALTVLI 357 (1333)
Q Consensus 278 ~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~~~~rir~~l~~~i 357 (1333)
+...++.++..++..+.|+++..+++.+.++... .....+.++..+++..++.......+.+...+.+.+++..+...+
T Consensus 2 ~l~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 80 (275)
T PF00664_consen 2 FLAILLSILSGLLSLLFPLLLGQIIDSLSSGNSD-NNSSLISLAFLLIAIFLLIFLFSYIYFYLSSRISQRIRKDLRKRL 80 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTTSC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778888888889999999999987665432 222255555555555556666666677778899999999999999
Q ss_pred HHHHhccccC---CCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 000720 358 YKRSMAIKFA---GPSSGIIINMINVDVERIGDFFLYIHRIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFVMVSNTP 434 (1333)
Q Consensus 358 y~K~L~ls~~---~~~~G~i~nlms~D~~~i~~~~~~~~~~w~~plqi~~~l~lL~~~lG~~a~l~gl~~~~~~~~~~~~ 434 (1333)
|+|.++.+.. ..++|+++|.+++|++++.+........+..++...++...+...++|..++..+++.++..++...
T Consensus 81 ~~~~~~~~~~~~~~~~~g~l~~~i~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~~~~~~~~~~ 160 (275)
T PF00664_consen 81 FEKLLRLPYSYFDKNSSGELLSRITNDIEQIENFLSSSLFQIISSIISIIFSLILLFFISWKLALILLIILPLLFLISFI 160 (275)
T ss_dssp HHHHHHSHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhhhhcccccccccccccccccccccccccccccccchhhhhhhcccccccccccccchhhhhhHhhhhh
Confidence 9999998765 2389999999999999999988765555554444444333333355656677777777788888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-HH
Q 000720 435 LANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIAFLFWAS-PT-LV 512 (1333)
Q Consensus 435 ~~~~~~~~~~~~~~~~D~R~~~~~E~L~~Ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~a~~~~~~~~~-p~-lv 512 (1333)
+.++.++..++..++.+++.+.++|.++|+|+||.|++|+.+.++.++.+++..+..++............... .. .+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (275)
T PF00664_consen 161 FSKKIRKLSKKYQEANSELNSFLSESLSGIRTIKAFGAEDYFLERFNKALEKYRKASFKYAKIQALLSSISQFISYLSIV 240 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccccccccccccccccccccccccchhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999887766665555444444333333222 22 34
Q ss_pred HHHHHHHHH-HhcCCCCHHHHHHHHHHHHHHHHHH
Q 000720 513 SVITFGVCI-LLKTPLTSGAVLSALATFRILQEPI 546 (1333)
Q Consensus 513 ~~~tF~~~~-~~~~~Lt~~~vft~lalf~~l~~pl 546 (1333)
.++.++.+. ...+.++++.+++.+.++..+..|+
T Consensus 241 ~~~~~g~~~~~~~g~~s~g~~~~~~~~~~~~~~pl 275 (275)
T PF00664_consen 241 LILIFGAYLSVINGQISIGTLVAFLSLSSQLINPL 275 (275)
T ss_dssp HHHHHHHHH-HCTTSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHhhC
Confidence 456678887 7889999999999999999999986
No 436
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.80 E-value=6.5e-20 Score=194.26 Aligned_cols=122 Identities=29% Similarity=0.429 Sum_probs=107.1
Q ss_pred cEEEEEEEEEECCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCCCC---hHHHhh
Q 000720 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIG---LQDLRS 1283 (1333)
Q Consensus 1207 ~I~f~nVsf~Y~~~~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~i~---l~~LRs 1283 (1333)
.|+++||+.+|+.+ ..+|+||||+|++||.|||+|+||||||||+.+|-|+.+|++|+|.++|.+|..+. ++++|+
T Consensus 3 ~i~~~nl~k~yp~~-~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~ 81 (258)
T COG3638 3 MIEVKNLSKTYPGG-HQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRR 81 (258)
T ss_pred eEEEeeeeeecCCC-ceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHH
Confidence 58999999999754 45999999999999999999999999999999999999999999999999999998 778899
Q ss_pred cCeEeccccccccc-chhhhcCC------------CCCCCH---HHHHHHHHhCCCCccccc
Q 000720 1284 RLSIIPQDPMLFQG-TVRTNLDP------------LEQHSD---QEIWEVKISKLLTHKSYQ 1329 (1333)
Q Consensus 1284 ~isiVpQdp~LF~G-TIR~NLdp------------~~~~sD---eeI~~aL~~~~L~~~~~~ 1329 (1333)
++|+|.|.|-|-.. |+-+|+.- |+-++. .+..+||+++++.++.++
T Consensus 82 ~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~q 143 (258)
T COG3638 82 DIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQ 143 (258)
T ss_pred hceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHH
Confidence 99999999998865 89999841 234443 458899999999887554
No 437
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.80 E-value=1.5e-19 Score=198.30 Aligned_cols=122 Identities=30% Similarity=0.488 Sum_probs=105.5
Q ss_pred EEEEEEEEEECCC---CCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCCCC---hHHH
Q 000720 1208 IELENLLVQYNPT---LPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIG---LQDL 1281 (1333)
Q Consensus 1208 I~f~nVsf~Y~~~---~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~i~---l~~L 1281 (1333)
|+|+||+..|... .+.+|+||||+|++||..||||+||||||||+.++-|+-+|++|+|.+||.||..++ +..+
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~ 81 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQL 81 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHH
Confidence 8999999999752 356999999999999999999999999999999999999999999999998888776 5556
Q ss_pred hhcCeEecccccccc-cchhhhcC-CCC--CCCH----HHHHHHHHhCCCCccccc
Q 000720 1282 RSRLSIIPQDPMLFQ-GTVRTNLD-PLE--QHSD----QEIWEVKISKLLTHKSYQ 1329 (1333)
Q Consensus 1282 Rs~isiVpQdp~LF~-GTIR~NLd-p~~--~~sD----eeI~~aL~~~~L~~~~~~ 1329 (1333)
|++||+|+|++-|++ -|+.+|+. |.. ..+. +.+.+.|+.+||.|+-..
T Consensus 82 R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~ 137 (339)
T COG1135 82 RQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADR 137 (339)
T ss_pred HhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhcc
Confidence 789999999999997 79999997 542 2344 346789999999887543
No 438
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.80 E-value=3.9e-19 Score=193.01 Aligned_cols=158 Identities=17% Similarity=0.140 Sum_probs=106.3
Q ss_pred CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCC-----Cc----EEE---ECCeEEEEcCCCCCCCCCHHHHhccCCc
Q 000720 617 KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRIS-----GA----AIK---VHGKKAYVPQSSWIQTGTIRENILFGKD 684 (1333)
Q Consensus 617 nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~-----G~----~i~---~~g~iayv~Q~~~i~~~Tv~enI~~g~~ 684 (1333)
++++.+| +.+|+||||||||||+.+|...+.... |. .+. ....+.+.+|+.-... |-. ..
T Consensus 16 ~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~-----~~~--~~ 87 (198)
T cd03276 16 QIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKASDTNRGSSLKDLIKDGESSAKITVTLKNQGLDA-----NPL--CV 87 (198)
T ss_pred EEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCcccccccccHHHHhhCCCCeEEEEEEEEcCCccC-----CcC--CH
Confidence 5666666 789999999999999999874322111 11 000 0123566666543322 100 00
Q ss_pred CCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHH----ccCCCEEEEeCCCCCCCHHHHHHHH
Q 000720 685 MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAV----YSNSDVYIFDDPFSAVDAHTGTHLF 760 (1333)
Q Consensus 685 ~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl----~~~~~illLDEP~saLD~~~~~~l~ 760 (1333)
......+++++. .....+++.+||||||||++||||+ +.+|++++||||+++||+.....+.
T Consensus 88 ~~~~~~~~~l~~--------------~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~ 153 (198)
T cd03276 88 LSQDMARSFLTS--------------NKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKIST 153 (198)
T ss_pred HHHHHHHHHhcc--------------ccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHH
Confidence 011122222211 1223467889999999999999999 6999999999999999999988777
Q ss_pred HHHHHHHhC--C-CeEEEecCchhhhhcCCEEEEEeCCe
Q 000720 761 KQCLMGLLS--Q-KTVLYTTHQLEFLDAADLVLVMKDGK 796 (1333)
Q Consensus 761 ~~~~~~~~~--~-~TvIlvtH~~~~l~~aD~i~vl~~G~ 796 (1333)
+.+.+...+ + .|+|++||+++.+...|+|-+|+.|+
T Consensus 154 ~~l~~~~~~~~~~~~iii~th~~~~i~~~d~v~~~~~~~ 192 (198)
T cd03276 154 DLLVKEAKKQPGRQFIFITPQDISGLASSDDVKVFRMKD 192 (198)
T ss_pred HHHHHHHhcCCCcEEEEEECCcccccccccceeEEEecC
Confidence 644443332 3 58999999999998889999998754
No 439
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.80 E-value=2.9e-19 Score=206.31 Aligned_cols=196 Identities=22% Similarity=0.369 Sum_probs=151.5
Q ss_pred CccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEEC--CeEEEE
Q 000720 588 DVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVH--GKKAYV 664 (1333)
Q Consensus 588 ~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~--g~iayv 664 (1333)
...+++.+++|.|+.+ .. +.+++ ++.++--+..+++|+||+||||+++++.|+..|..|.+ .++ -+++|-
T Consensus 360 ~p~l~i~~V~f~y~p~-----~y-~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~-~~~~r~ri~~f 432 (582)
T KOG0062|consen 360 PPNLRISYVAFEYTPS-----EY-QWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIV-GRHPRLRIKYF 432 (582)
T ss_pred CCeeEEEeeeccCCCc-----ch-hhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCccccee-eecccceecch
Confidence 4569999999999865 22 67777 99999999999999999999999999999999999965 443 368999
Q ss_pred cCCC--CCC-CCCHHHHhc--c-CCcCCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHHccC
Q 000720 665 PQSS--WIQ-TGTIRENIL--F-GKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSN 738 (1333)
Q Consensus 665 ~Q~~--~i~-~~Tv~enI~--~-g~~~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~ 738 (1333)
.|.. |+. +.+.-|-.. | |. .++.|++-+...++..++..- ...+||||||-||++|.....+
T Consensus 433 ~Qhhvd~l~~~v~~vd~~~~~~pG~--~~ee~r~hl~~~Gl~g~la~~----------si~~LSGGQKsrvafA~~~~~~ 500 (582)
T KOG0062|consen 433 AQHHVDFLDKNVNAVDFMEKSFPGK--TEEEIRRHLGSFGLSGELALQ----------SIASLSGGQKSRVAFAACTWNN 500 (582)
T ss_pred hHhhhhHHHHHhHHHHHHHHhCCCC--CHHHHHHHHHhcCCCchhhhc----------cccccCCcchhHHHHHHHhcCC
Confidence 9974 422 112222221 1 22 456777777777777666542 2468999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEecCchhhhhc-CCEEEEEeCCeEEE-ccChHHH
Q 000720 739 SDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS-QKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQ-SGKYEDL 806 (1333)
Q Consensus 739 ~~illLDEP~saLD~~~~~~l~~~~~~~~~~-~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~~-~g~~~~l 806 (1333)
|.+|+|||||+.||.++-..+-+ .+.. +..||+||||.++++. |+.+.+.+||++.. .|+.++.
T Consensus 501 PhlLVLDEPTNhLD~dsl~AL~~----Al~~F~GGVv~VSHd~~fi~~~c~E~Wvve~g~vt~ieg~~~~y 567 (582)
T KOG0062|consen 501 PHLLVLDEPTNHLDRDSLGALAK----ALKNFNGGVVLVSHDEEFISSLCKELWVVEDGKVTPIEGGIDKY 567 (582)
T ss_pred CcEEEecCCCccccHHHHHHHHH----HHHhcCCcEEEEECcHHHHhhcCceeEEEcCCcEEeeeccHHHH
Confidence 99999999999999988655433 2222 4679999999999986 99999999999963 4544443
No 440
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.79 E-value=5.1e-19 Score=198.04 Aligned_cols=197 Identities=21% Similarity=0.333 Sum_probs=143.6
Q ss_pred ccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECC--eEEEEc
Q 000720 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--KKAYVP 665 (1333)
Q Consensus 589 ~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g--~iayv~ 665 (1333)
..+.+.|++|.|+.. .|..++ +|-|.--..++||||||.||||||++|+|.+.|.+|+. +-+. +||+..
T Consensus 585 PvLGlH~VtFgy~gq-------kpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~-RKnhrL~iG~Fd 656 (807)
T KOG0066|consen 585 PVLGLHDVTFGYPGQ-------KPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGEL-RKNHRLRIGWFD 656 (807)
T ss_pred CeeecccccccCCCC-------CchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchh-hccceeeeechh
Confidence 457889999999864 678888 99999999999999999999999999999999999985 3222 589988
Q ss_pred CCCC--C-CCCCHHHHhc--cCCcCCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHHccCCC
Q 000720 666 QSSW--I-QTGTIRENIL--FGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSD 740 (1333)
Q Consensus 666 Q~~~--i-~~~Tv~enI~--~g~~~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ 740 (1333)
|+.- + ...|--|.+. |..++.+ -++.+-..+|... ..| -+...||||||.||++|---+..||
T Consensus 657 Qh~~E~L~~Eetp~EyLqr~FNlpyq~--ARK~LG~fGL~sH-------AHT---ikikdLSGGQKaRValaeLal~~PD 724 (807)
T KOG0066|consen 657 QHANEALNGEETPVEYLQRKFNLPYQE--ARKQLGTFGLASH-------AHT---IKIKDLSGGQKARVALAELALGGPD 724 (807)
T ss_pred hhhHHhhccccCHHHHHHHhcCCChHH--HHHHhhhhhhhhc-------cce---EeeeecCCcchHHHHHHHHhcCCCC
Confidence 8753 2 2347777775 3333322 2233333333211 112 2457899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhhhcC-CEEEEEeCCeEE-EccChHHHHh
Q 000720 741 VYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAA-DLVLVMKDGKIE-QSGKYEDLIA 808 (1333)
Q Consensus 741 illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l~~a-D~i~vl~~G~i~-~~g~~~~l~~ 808 (1333)
|+||||||+.||.++...+-+ .++.. +..||+||||-..+... -..+|+++-.|- -.|+++++..
T Consensus 725 vlILDEPTNNLDIESIDALaE-AIney--~GgVi~VsHDeRLi~eT~C~LwVvE~Q~i~eIdGdFeDYkk 791 (807)
T KOG0066|consen 725 VLILDEPTNNLDIESIDALAE-AINEY--NGGVIMVSHDERLIVETDCNLWVVENQGIDEIDGDFEDYKK 791 (807)
T ss_pred EEEecCCCCCcchhhHHHHHH-HHHhc--cCcEEEEecccceeeecCceEEEEccCChhhccccHHHHHH
Confidence 999999999999988665543 33332 45799999999887653 345666665553 3577766654
No 441
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.79 E-value=4e-19 Score=189.40 Aligned_cols=142 Identities=23% Similarity=0.246 Sum_probs=99.1
Q ss_pred cEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEE--CCeE--EEEcCCCCCCCCCHHHHhccCCcCCHHHHHHHHHHccc
Q 000720 624 SKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKV--HGKK--AYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCAL 699 (1333)
Q Consensus 624 e~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~--~g~i--ayv~Q~~~i~~~Tv~enI~~g~~~~~~~~~~v~~~~~l 699 (1333)
.+.+|+||||||||+++.+|.=.+- |+.... .... .+-...++...+.|+ +.|
T Consensus 23 ~~~~i~G~NGsGKSnil~Ai~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~f------------------ 79 (178)
T cd03239 23 SFNAIVGPNGSGKSNIVDAICFVLG---GKAAKLRRGSLLFLAGGGVKAGINSASVE--ITF------------------ 79 (178)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHcC---cccccccCcchhhhcccccCCCCceEEEE--EEE------------------
Confidence 3999999999999999999863221 111000 0000 011111111111111 111
Q ss_pred chHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHHc----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEE
Q 000720 700 NQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVY----SNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLY 775 (1333)
Q Consensus 700 ~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~----~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIl 775 (1333)
..+...+|.|+.|++ ||||||||++|||++. .+|+++++|||+++||+.....+.+.+.+...+++|+|+
T Consensus 80 ~~~~~~~~~~~~~~~------LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIi 153 (178)
T cd03239 80 DKSYFLVLQGKVEQI------LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIV 153 (178)
T ss_pred ECceEEecCCcCccc------CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 222567889998877 9999999999999984 799999999999999999988777644333344689999
Q ss_pred ecCchhhhhcCCEEEEEeC
Q 000720 776 TTHQLEFLDAADLVLVMKD 794 (1333)
Q Consensus 776 vtH~~~~l~~aD~i~vl~~ 794 (1333)
+||+.+.+..+|+++.+..
T Consensus 154 iSH~~~~~~~adrvi~i~~ 172 (178)
T cd03239 154 ITLKKEMFENADKLIGVLF 172 (178)
T ss_pred EECCHHHHhhCCeEEEEEE
Confidence 9999998888999999964
No 442
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.79 E-value=2.8e-19 Score=197.59 Aligned_cols=120 Identities=22% Similarity=0.331 Sum_probs=103.0
Q ss_pred EEEEEEEEEECCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCCCChH---HHhhc
Q 000720 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQ---DLRSR 1284 (1333)
Q Consensus 1208 I~f~nVsf~Y~~~~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~i~l~---~LRs~ 1284 (1333)
|+++|++++|+.+..++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.|+.+.+.. .+|++
T Consensus 2 l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (216)
T TIGR00960 2 IRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRH 81 (216)
T ss_pred eEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHh
Confidence 789999999964433599999999999999999999999999999999999999999999999999877644 47889
Q ss_pred CeEecccccccc-cchhhhcCCC----C---CCCHHHHHHHHHhCCCCccc
Q 000720 1285 LSIIPQDPMLFQ-GTVRTNLDPL----E---QHSDQEIWEVKISKLLTHKS 1327 (1333)
Q Consensus 1285 isiVpQdp~LF~-GTIR~NLdp~----~---~~sDeeI~~aL~~~~L~~~~ 1327 (1333)
++++||+|.+|. .|+++|+... + +..++++.++++.++|.+..
T Consensus 82 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 132 (216)
T TIGR00960 82 IGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKA 132 (216)
T ss_pred ceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhh
Confidence 999999999987 5999999631 1 12356789999999997643
No 443
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.78 E-value=3.8e-19 Score=199.37 Aligned_cols=118 Identities=30% Similarity=0.519 Sum_probs=104.0
Q ss_pred EEEEEEEEEECCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCCCChHHHhhcCeE
Q 000720 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1287 (1333)
Q Consensus 1208 I~f~nVsf~Y~~~~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~i~l~~LRs~isi 1287 (1333)
|+++|++++|+.+.+++|+|+||+|++||.+||+|++|||||||+++|.|++.|++|+|.+||.|+...+...+|+++++
T Consensus 1 i~~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (237)
T cd03252 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGV 80 (237)
T ss_pred CEEEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEE
Confidence 57999999996544459999999999999999999999999999999999999999999999999999888899999999
Q ss_pred ecccccccccchhhhcCCCC-CCCHHHHHHHHHhCCCCc
Q 000720 1288 IPQDPMLFQGTVRTNLDPLE-QHSDQEIWEVKISKLLTH 1325 (1333)
Q Consensus 1288 VpQdp~LF~GTIR~NLdp~~-~~sDeeI~~aL~~~~L~~ 1325 (1333)
+||+|.+|+.|+++||.... ..+.+++.++++..++.+
T Consensus 81 ~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~ 119 (237)
T cd03252 81 VLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHD 119 (237)
T ss_pred EcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHH
Confidence 99999999999999997543 345666777777666544
No 444
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.78 E-value=5.9e-19 Score=196.79 Aligned_cols=119 Identities=37% Similarity=0.592 Sum_probs=106.5
Q ss_pred ccEEEEEEEEEECCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCCCChHHHhhcC
Q 000720 1206 GKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRL 1285 (1333)
Q Consensus 1206 G~I~f~nVsf~Y~~~~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~i~l~~LRs~i 1285 (1333)
|+|+++|++++|..+ .++|+|+||+|++||.+||+|++|||||||+++|.|+.+|++|+|.+||.++.+.+...+|+++
T Consensus 1 ~~l~~~~l~~~~~~~-~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 79 (229)
T cd03254 1 GEIEFENVNFSYDEK-KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMI 79 (229)
T ss_pred CeEEEEEEEEecCCC-CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhE
Confidence 579999999999633 3499999999999999999999999999999999999999999999999999998888999999
Q ss_pred eEecccccccccchhhhcCCCC-CCCHHHHHHHHHhCCCCc
Q 000720 1286 SIIPQDPMLFQGTVRTNLDPLE-QHSDQEIWEVKISKLLTH 1325 (1333)
Q Consensus 1286 siVpQdp~LF~GTIR~NLdp~~-~~sDeeI~~aL~~~~L~~ 1325 (1333)
+++||+|.+|++|+++|+.... ...++++.++++.+++.+
T Consensus 80 ~~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~ 120 (229)
T cd03254 80 GVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHD 120 (229)
T ss_pred EEecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHH
Confidence 9999999999999999997543 356677888888877643
No 445
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.78 E-value=3.8e-19 Score=203.36 Aligned_cols=119 Identities=26% Similarity=0.393 Sum_probs=105.1
Q ss_pred cEEEEEEEEEECCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCCCChHHHhhcCe
Q 000720 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLS 1286 (1333)
Q Consensus 1207 ~I~f~nVsf~Y~~~~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~i~l~~LRs~is 1286 (1333)
-|+++||+++|+.+ .++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.+.+...+|++++
T Consensus 4 ~l~~~~l~~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 82 (274)
T PRK13647 4 IIEVEDLHFRYKDG-TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVG 82 (274)
T ss_pred eEEEEEEEEEeCCC-CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEE
Confidence 48999999999643 34999999999999999999999999999999999999999999999999999988899999999
Q ss_pred Eecccc--cccccchhhhcCCCC---CCC----HHHHHHHHHhCCCCcc
Q 000720 1287 IIPQDP--MLFQGTVRTNLDPLE---QHS----DQEIWEVKISKLLTHK 1326 (1333)
Q Consensus 1287 iVpQdp--~LF~GTIR~NLdp~~---~~s----DeeI~~aL~~~~L~~~ 1326 (1333)
++||+| .+|..|+++|+.... ..+ ++++.++|+.++|.+.
T Consensus 83 ~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~ 131 (274)
T PRK13647 83 LVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDF 131 (274)
T ss_pred EEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHH
Confidence 999999 688999999997421 122 3568899999999654
No 446
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.78 E-value=5e-19 Score=202.96 Aligned_cols=121 Identities=21% Similarity=0.324 Sum_probs=105.3
Q ss_pred cEEEEEEEEEECCC-CCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCCCChHHHhhcC
Q 000720 1207 KIELENLLVQYNPT-LPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRL 1285 (1333)
Q Consensus 1207 ~I~f~nVsf~Y~~~-~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~i~l~~LRs~i 1285 (1333)
.|+++||+++|+.. .+++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.+.+...+|+++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 48999999999642 24599999999999999999999999999999999999999999999999999998999999999
Q ss_pred eEecccc--cccccchhhhcCCCC---CCC----HHHHHHHHHhCCCCccc
Q 000720 1286 SIIPQDP--MLFQGTVRTNLDPLE---QHS----DQEIWEVKISKLLTHKS 1327 (1333)
Q Consensus 1286 siVpQdp--~LF~GTIR~NLdp~~---~~s----DeeI~~aL~~~~L~~~~ 1327 (1333)
++|||+| .++..||++||.... ..+ ++.+.++|++++|.+..
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~ 134 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFK 134 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHh
Confidence 9999998 466789999997421 122 35689999999997543
No 447
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.78 E-value=4.9e-19 Score=188.15 Aligned_cols=119 Identities=29% Similarity=0.505 Sum_probs=104.4
Q ss_pred ccEEEEEEEEEECCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCCCChH---HHh
Q 000720 1206 GKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQ---DLR 1282 (1333)
Q Consensus 1206 G~I~f~nVsf~Y~~~~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~i~l~---~LR 1282 (1333)
-.|++++|+++|.. ..||+||||+|++||.+||+|+||||||||++++.|+..|++|+|.|||.||.+++-+ .+|
T Consensus 7 ~~I~vr~v~~~fG~--~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir 84 (263)
T COG1127 7 PLIEVRGVTKSFGD--RVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIR 84 (263)
T ss_pred ceEEEeeeeeecCC--EEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHH
Confidence 36999999999954 3599999999999999999999999999999999999999999999999999999875 459
Q ss_pred hcCeEeccccccccc-chhhhcC-CCCCC---CHHHHH----HHHHhCCCCcc
Q 000720 1283 SRLSIIPQDPMLFQG-TVRTNLD-PLEQH---SDQEIW----EVKISKLLTHK 1326 (1333)
Q Consensus 1283 s~isiVpQdp~LF~G-TIR~NLd-p~~~~---sDeeI~----~aL~~~~L~~~ 1326 (1333)
+++|++.|..-||+. ||+||+. |..+| +++++. .-|+.|||...
T Consensus 85 ~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~ 137 (263)
T COG1127 85 KRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGA 137 (263)
T ss_pred hheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChh
Confidence 999999999999977 9999997 66554 444443 45888998865
No 448
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.77 E-value=9.8e-19 Score=192.83 Aligned_cols=123 Identities=28% Similarity=0.391 Sum_probs=109.6
Q ss_pred cEEEEEEEEEECCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCC-CCChHHHhhcC
Q 000720 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDIS-MIGLQDLRSRL 1285 (1333)
Q Consensus 1207 ~I~f~nVsf~Y~~~~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~-~i~l~~LRs~i 1285 (1333)
.|+++|++|+|.++ .++|+|+||+|++||.++|+|+||||||||+++|.+++.|++|.|.+||.|++ .-+...+|+++
T Consensus 3 ~i~~~~l~~~y~~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~v 81 (235)
T COG1122 3 MIEAENLSFRYPGR-KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKV 81 (235)
T ss_pred eEEEEEEEEEcCCC-ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcce
Confidence 58999999999877 66999999999999999999999999999999999999999999999999999 48999999999
Q ss_pred eEecccc--cccccchhhhcCCCC---CCCHH----HHHHHHHhCCCCcccccC
Q 000720 1286 SIIPQDP--MLFQGTVRTNLDPLE---QHSDQ----EIWEVKISKLLTHKSYQC 1330 (1333)
Q Consensus 1286 siVpQdp--~LF~GTIR~NLdp~~---~~sDe----eI~~aL~~~~L~~~~~~~ 1330 (1333)
|+|.|+| .+|..||.+.+.... ..+.+ .+.+||+.|+|.+.-...
T Consensus 82 G~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~ 135 (235)
T COG1122 82 GLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRP 135 (235)
T ss_pred EEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCC
Confidence 9999999 899999999997542 24443 478899999997664333
No 449
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.77 E-value=1e-18 Score=196.32 Aligned_cols=116 Identities=34% Similarity=0.538 Sum_probs=104.6
Q ss_pred cEEEEEEEEEECCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCCCChHHHhhcCe
Q 000720 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLS 1286 (1333)
Q Consensus 1207 ~I~f~nVsf~Y~~~~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~i~l~~LRs~is 1286 (1333)
.|+++|++++|.. .++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.|+...+..++|++++
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 80 (241)
T PRK14250 3 EIEFKEVSYSSFG--KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIG 80 (241)
T ss_pred eEEEEeEEEEeCC--eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEE
Confidence 4899999999953 34999999999999999999999999999999999999999999999999999888889999999
Q ss_pred EecccccccccchhhhcCCCC---CCCHHHHHHHHHhCCCC
Q 000720 1287 IIPQDPMLFQGTVRTNLDPLE---QHSDQEIWEVKISKLLT 1324 (1333)
Q Consensus 1287 iVpQdp~LF~GTIR~NLdp~~---~~sDeeI~~aL~~~~L~ 1324 (1333)
++||+|.+|++|+++|+.... ...++++.+.++.++|.
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~ 121 (241)
T PRK14250 81 MVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLN 121 (241)
T ss_pred EEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCC
Confidence 999999999999999997422 22356788999999995
No 450
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.77 E-value=1.1e-18 Score=203.16 Aligned_cols=119 Identities=24% Similarity=0.293 Sum_probs=101.6
Q ss_pred ccEEEEEEEEEECCCC---CCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCCC------
Q 000720 1206 GKIELENLLVQYNPTL---PMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMI------ 1276 (1333)
Q Consensus 1206 G~I~f~nVsf~Y~~~~---p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~i------ 1276 (1333)
.-|+++||+++|+... .++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||+++.+.
T Consensus 20 ~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~ 99 (320)
T PRK13631 20 IILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHEL 99 (320)
T ss_pred ceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccc
Confidence 3599999999996432 3599999999999999999999999999999999999999999999999999763
Q ss_pred ----------ChHHHhhcCeEecccc--cccccchhhhcCCCC---CCCH----HHHHHHHHhCCCC
Q 000720 1277 ----------GLQDLRSRLSIIPQDP--MLFQGTVRTNLDPLE---QHSD----QEIWEVKISKLLT 1324 (1333)
Q Consensus 1277 ----------~l~~LRs~isiVpQdp--~LF~GTIR~NLdp~~---~~sD----eeI~~aL~~~~L~ 1324 (1333)
+...+|+++++|||+| .+|++||++||.... ..++ +.+.+++++++|.
T Consensus 100 ~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~ 166 (320)
T PRK13631 100 ITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLD 166 (320)
T ss_pred cccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCC
Confidence 4568899999999998 799999999996421 1233 3456789999986
No 451
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.77 E-value=7.3e-19 Score=195.77 Aligned_cols=117 Identities=32% Similarity=0.470 Sum_probs=102.6
Q ss_pred EEEEEEEEEECCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhccc-----CCCCCeEEEcCEeCCCCC--hHH
Q 000720 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVV-----EPSGGRILIDGVDISMIG--LQD 1280 (1333)
Q Consensus 1208 I~f~nVsf~Y~~~~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~-----ep~~G~I~IDGvdI~~i~--l~~ 1280 (1333)
|+++||+++|+. . ++|+|+||+|++||++||+|++|||||||+++|.|++ +|++|+|.+||.++.+.+ ...
T Consensus 1 i~~~~l~~~~~~-~-~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 78 (227)
T cd03260 1 IELRDLNVYYGD-K-HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLE 78 (227)
T ss_pred CEEEEEEEEcCC-c-eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHH
Confidence 578999999964 3 4999999999999999999999999999999999999 999999999999998877 677
Q ss_pred HhhcCeEecccccccccchhhhcCCCC---C-C----CHHHHHHHHHhCCCCcc
Q 000720 1281 LRSRLSIIPQDPMLFQGTVRTNLDPLE---Q-H----SDQEIWEVKISKLLTHK 1326 (1333)
Q Consensus 1281 LRs~isiVpQdp~LF~GTIR~NLdp~~---~-~----sDeeI~~aL~~~~L~~~ 1326 (1333)
+|++++++||+|.+|..|+++|+.... . . .++++.++++.++|.+.
T Consensus 79 ~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 132 (227)
T cd03260 79 LRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDE 132 (227)
T ss_pred HHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChH
Confidence 899999999999999889999996421 1 1 24578899999999754
No 452
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.77 E-value=4.4e-18 Score=175.03 Aligned_cols=199 Identities=22% Similarity=0.358 Sum_probs=147.3
Q ss_pred CCccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECCe-----
Q 000720 587 SDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK----- 660 (1333)
Q Consensus 587 ~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g~----- 660 (1333)
++.+|++.+..|+|+.. .|..-| |++++.|....++|.|||||||||+++.|-.-.-.|. +.+.|+
T Consensus 10 ~~~aievsgl~f~y~~~-------dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~-v~VlgrsaFhD 81 (291)
T KOG2355|consen 10 SDFAIEVSGLQFKYKVS-------DPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGV-VQVLGRSAFHD 81 (291)
T ss_pred ccceEEEeccEEecccC-------CceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCe-EEEcCcCcccc
Confidence 46789999999999865 478889 9999999999999999999999999999976554444 355543
Q ss_pred --------EEEEcCC----------CCCC-CCCHHHHhccCCcC-CHHHHHHHHHHcccchHHHhhcCCCccccCCCCCC
Q 000720 661 --------KAYVPQS----------SWIQ-TGTIRENILFGKDM-RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1333)
Q Consensus 661 --------iayv~Q~----------~~i~-~~Tv~enI~~g~~~-~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~ 720 (1333)
..|..-+ ..+| ..++. ...||-.. +.++.++.++.. +-|+. =+...
T Consensus 82 t~l~~Sgdl~YLGgeW~~~~~~agevplq~D~sae-~mifgV~g~dp~Rre~LI~iL--DIdl~-----------WRmHk 147 (291)
T KOG2355|consen 82 TSLESSGDLSYLGGEWSKTVGIAGEVPLQGDISAE-HMIFGVGGDDPERREKLIDIL--DIDLR-----------WRMHK 147 (291)
T ss_pred ccccccCceeEecccccccccccccccccccccHH-HHHhhccCCChhHhhhhhhhe--eccce-----------EEEee
Confidence 2333221 1122 22343 34454332 334545554422 11111 25678
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCeEEEecCchhhhhc-CCEEEEEeCCeEE
Q 000720 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-LSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIE 798 (1333)
Q Consensus 721 LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~-~~~~TvIlvtH~~~~l~~-aD~i~vl~~G~i~ 798 (1333)
+|-|||+||+|+..|.+.=+++||||.|-.||.-.+..+.+-+.... .+|.|||+.||-.+=++. +.+++.|++|+++
T Consensus 148 vSDGqrRRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDGLe~Wpthl~yi~~Gkl~ 227 (291)
T KOG2355|consen 148 VSDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDGLETWPTHLVYIKSGKLV 227 (291)
T ss_pred ccccchhhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccchhhcchhEEEecCCeee
Confidence 99999999999999999999999999999999988888876544333 468999999999887765 9999999999999
Q ss_pred EccChHHHH
Q 000720 799 QSGKYEDLI 807 (1333)
Q Consensus 799 ~~g~~~~l~ 807 (1333)
..-+++++.
T Consensus 228 ~~l~~~~i~ 236 (291)
T KOG2355|consen 228 DNLKYQKIK 236 (291)
T ss_pred eccccchhh
Confidence 866666554
No 453
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.77 E-value=9e-19 Score=191.74 Aligned_cols=106 Identities=25% Similarity=0.414 Sum_probs=95.5
Q ss_pred EEEEEEEEEECCCC---CCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCCCChHHHhhc
Q 000720 1208 IELENLLVQYNPTL---PMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSR 1284 (1333)
Q Consensus 1208 I~f~nVsf~Y~~~~---p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~i~l~~LRs~ 1284 (1333)
|+++||+++|.+.. +++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+|| +
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------------~ 67 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------S 67 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-------------E
Confidence 57999999997542 3599999999999999999999999999999999999999999999999 6
Q ss_pred CeEecccccccccchhhhcCCCCCCCHHHHHHHHHhCCCCcc
Q 000720 1285 LSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVKISKLLTHK 1326 (1333)
Q Consensus 1285 isiVpQdp~LF~GTIR~NLdp~~~~sDeeI~~aL~~~~L~~~ 1326 (1333)
|+++||+|.+|++|+++|+.+....++++.+++++.+++.+.
T Consensus 68 i~~~~q~~~l~~~t~~enl~~~~~~~~~~~~~~~~~~~l~~~ 109 (204)
T cd03250 68 IAYVSQEPWIQNGTIRENILFGKPFDEERYEKVIKACALEPD 109 (204)
T ss_pred EEEEecCchhccCcHHHHhccCCCcCHHHHHHHHHHcCcHHH
Confidence 999999999999999999987656667788888888887543
No 454
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.77 E-value=9e-19 Score=197.44 Aligned_cols=116 Identities=21% Similarity=0.307 Sum_probs=102.8
Q ss_pred cEEEEEEEEEECCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccC---CCCCeEEEcCEeCCCCChHHHhh
Q 000720 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVE---PSGGRILIDGVDISMIGLQDLRS 1283 (1333)
Q Consensus 1207 ~I~f~nVsf~Y~~~~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~e---p~~G~I~IDGvdI~~i~l~~LRs 1283 (1333)
.|+++|++++|+. +++|+|+||+|++||.+||+|++|||||||+++|.|+++ |++|+|.+||.|+.+.+...+|+
T Consensus 2 ~~~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 79 (246)
T PRK14269 2 IAKTTNLNLFYGK--KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRK 79 (246)
T ss_pred ceeeeeeEEEECC--EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhh
Confidence 4789999999963 359999999999999999999999999999999999985 68999999999999998889999
Q ss_pred cCeEecccccccccchhhhcCCCC---------CCCHHHHHHHHHhCCCC
Q 000720 1284 RLSIIPQDPMLFQGTVRTNLDPLE---------QHSDQEIWEVKISKLLT 1324 (1333)
Q Consensus 1284 ~isiVpQdp~LF~GTIR~NLdp~~---------~~sDeeI~~aL~~~~L~ 1324 (1333)
+++++||+|.+|..|+++|+.... +..++++.++++.++|.
T Consensus 80 ~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 129 (246)
T PRK14269 80 NVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLF 129 (246)
T ss_pred hEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCC
Confidence 999999999999999999996421 11234688999999995
No 455
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.77 E-value=1.8e-18 Score=191.77 Aligned_cols=121 Identities=33% Similarity=0.528 Sum_probs=107.4
Q ss_pred ccEEEEEEEEEECCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCCCChHHHhhcC
Q 000720 1206 GKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRL 1285 (1333)
Q Consensus 1206 G~I~f~nVsf~Y~~~~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~i~l~~LRs~i 1285 (1333)
|+|+++|++++|+....++|+|+||+|++||.+||+|++|||||||+++|.|+.+|++|+|.+||.++.+.+...+|+++
T Consensus 1 ~~l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (220)
T cd03245 1 GRIEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNI 80 (220)
T ss_pred CeEEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhE
Confidence 57999999999964323599999999999999999999999999999999999999999999999999988888889999
Q ss_pred eEecccccccccchhhhcCCC-CCCCHHHHHHHHHhCCCCcc
Q 000720 1286 SIIPQDPMLFQGTVRTNLDPL-EQHSDQEIWEVKISKLLTHK 1326 (1333)
Q Consensus 1286 siVpQdp~LF~GTIR~NLdp~-~~~sDeeI~~aL~~~~L~~~ 1326 (1333)
+++||+|.+|..|+++|+... ...+++++.++++..++.+.
T Consensus 81 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~ 122 (220)
T cd03245 81 GYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDF 122 (220)
T ss_pred EEeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHH
Confidence 999999999999999999754 23456678888999888653
No 456
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.77 E-value=1.1e-18 Score=200.98 Aligned_cols=117 Identities=32% Similarity=0.484 Sum_probs=101.7
Q ss_pred EEEEEEEEEECCCC---CCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCCCC--hHHHh
Q 000720 1208 IELENLLVQYNPTL---PMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIG--LQDLR 1282 (1333)
Q Consensus 1208 I~f~nVsf~Y~~~~---p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~i~--l~~LR 1282 (1333)
|+++||+++|++.. .++|+||||+|++||++||+|++|||||||+++|.|+.+|++|+|.+||.++++.+ ...+|
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (287)
T PRK13637 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR 82 (287)
T ss_pred EEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHh
Confidence 79999999996432 35999999999999999999999999999999999999999999999999998754 46889
Q ss_pred hcCeEecccc--cccccchhhhcCCCC---CCCH----HHHHHHHHhCCCC
Q 000720 1283 SRLSIIPQDP--MLFQGTVRTNLDPLE---QHSD----QEIWEVKISKLLT 1324 (1333)
Q Consensus 1283 s~isiVpQdp--~LF~GTIR~NLdp~~---~~sD----eeI~~aL~~~~L~ 1324 (1333)
+++++|||+| .+|+.|+++||.... ..++ +++.++|+.++|.
T Consensus 83 ~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~ 133 (287)
T PRK13637 83 KKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLD 133 (287)
T ss_pred hceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCC
Confidence 9999999998 578999999996321 2333 4578999999996
No 457
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.77 E-value=9.6e-19 Score=193.57 Aligned_cols=119 Identities=28% Similarity=0.359 Sum_probs=101.3
Q ss_pred EEEEEEEEEECCCC--CCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCCCChHH----H
Q 000720 1208 IELENLLVQYNPTL--PMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQD----L 1281 (1333)
Q Consensus 1208 I~f~nVsf~Y~~~~--p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~i~l~~----L 1281 (1333)
|+++||+++|+++. .++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.++.+.+.+. .
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 57899999996431 35999999999999999999999999999999999999999999999999998887543 4
Q ss_pred hhcCeEeccccccccc-chhhhcCCC---CCC----CHHHHHHHHHhCCCCcc
Q 000720 1282 RSRLSIIPQDPMLFQG-TVRTNLDPL---EQH----SDQEIWEVKISKLLTHK 1326 (1333)
Q Consensus 1282 Rs~isiVpQdp~LF~G-TIR~NLdp~---~~~----sDeeI~~aL~~~~L~~~ 1326 (1333)
|++++++||+|.+|.+ |+++|+... ... .++++.++++..+|.+.
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 133 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDR 133 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchh
Confidence 6789999999999987 999999642 111 24578899999999653
No 458
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.76 E-value=1.2e-18 Score=203.66 Aligned_cols=120 Identities=27% Similarity=0.445 Sum_probs=103.2
Q ss_pred EEEEEEEEEECCC--CCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCCCChHH---Hh
Q 000720 1208 IELENLLVQYNPT--LPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQD---LR 1282 (1333)
Q Consensus 1208 I~f~nVsf~Y~~~--~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~i~l~~---LR 1282 (1333)
|+++||+++|+.+ ..++|+|+||+|++||.+||+|+||||||||+++|.|+.+|++|+|.+||.||.+++..+ +|
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r 81 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 7899999999632 235999999999999999999999999999999999999999999999999999987655 58
Q ss_pred hcCeEecccccccc-cchhhhcC-CC--CCCC----HHHHHHHHHhCCCCccc
Q 000720 1283 SRLSIIPQDPMLFQ-GTVRTNLD-PL--EQHS----DQEIWEVKISKLLTHKS 1327 (1333)
Q Consensus 1283 s~isiVpQdp~LF~-GTIR~NLd-p~--~~~s----DeeI~~aL~~~~L~~~~ 1327 (1333)
++|++|||++.+|. .|+++|+. |. ...+ ++++.++|+.++|.+..
T Consensus 82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~ 134 (343)
T TIGR02314 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKH 134 (343)
T ss_pred cCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhh
Confidence 89999999999995 79999996 22 1122 34578999999997653
No 459
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=1.1e-18 Score=195.09 Aligned_cols=120 Identities=25% Similarity=0.380 Sum_probs=102.6
Q ss_pred cEEEEEEEEEECCCC--CCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCCCChHH---H
Q 000720 1207 KIELENLLVQYNPTL--PMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQD---L 1281 (1333)
Q Consensus 1207 ~I~f~nVsf~Y~~~~--p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~i~l~~---L 1281 (1333)
-++++||+++|+.+. .++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.|+.+++.+. +
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL 84 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHH
Confidence 489999999996432 35999999999999999999999999999999999999999999999999999988754 3
Q ss_pred h-hcCeEeccccccccc-chhhhcCC---CCCC----CHHHHHHHHHhCCCCcc
Q 000720 1282 R-SRLSIIPQDPMLFQG-TVRTNLDP---LEQH----SDQEIWEVKISKLLTHK 1326 (1333)
Q Consensus 1282 R-s~isiVpQdp~LF~G-TIR~NLdp---~~~~----sDeeI~~aL~~~~L~~~ 1326 (1333)
| ++++++||+|.+|.+ |+++|+.. .... .++++.++|+.++|.+.
T Consensus 85 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~ 138 (233)
T PRK11629 85 RNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHR 138 (233)
T ss_pred HhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchh
Confidence 3 679999999999976 99999853 1111 23568899999999654
No 460
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.76 E-value=8.5e-19 Score=194.28 Aligned_cols=118 Identities=25% Similarity=0.321 Sum_probs=100.7
Q ss_pred EEEEEEEEEECCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCCCChHHHhhcCeE
Q 000720 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1287 (1333)
Q Consensus 1208 I~f~nVsf~Y~~~~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~i~l~~LRs~isi 1287 (1333)
|+++||+++|..+..++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.... .++|+++++
T Consensus 1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 79 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDR-KAARQSLGY 79 (220)
T ss_pred CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccch-HHHhhhEEE
Confidence 5799999999643245999999999999999999999999999999999999999999999999997653 678889999
Q ss_pred eccccccc-ccchhhhcCCCC---CC----CHHHHHHHHHhCCCCcc
Q 000720 1288 IPQDPMLF-QGTVRTNLDPLE---QH----SDQEIWEVKISKLLTHK 1326 (1333)
Q Consensus 1288 VpQdp~LF-~GTIR~NLdp~~---~~----sDeeI~~aL~~~~L~~~ 1326 (1333)
+||+|.+| +.|+++|+.... .. .++++.++++.++|.+.
T Consensus 80 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 126 (220)
T cd03263 80 CPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDK 126 (220)
T ss_pred ecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHH
Confidence 99999999 679999996311 11 23568899999999653
No 461
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.76 E-value=1.5e-18 Score=184.91 Aligned_cols=96 Identities=32% Similarity=0.646 Sum_probs=90.6
Q ss_pred EEEEEEEEEECCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCCCChHHHhhcCeE
Q 000720 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1287 (1333)
Q Consensus 1208 I~f~nVsf~Y~~~~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~i~l~~LRs~isi 1287 (1333)
|+++|++++|+.+..++++|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.+.+.+.+|+++++
T Consensus 1 i~~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (173)
T cd03246 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGY 80 (173)
T ss_pred CEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEE
Confidence 57999999997543459999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccccccccchhhhc
Q 000720 1288 IPQDPMLFQGTVRTNL 1303 (1333)
Q Consensus 1288 VpQdp~LF~GTIR~NL 1303 (1333)
+||+|.+|++|+++|+
T Consensus 81 ~~q~~~~~~~tv~~~l 96 (173)
T cd03246 81 LPQDDELFSGSIAENI 96 (173)
T ss_pred ECCCCccccCcHHHHC
Confidence 9999999999999995
No 462
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.76 E-value=1.6e-18 Score=194.14 Aligned_cols=118 Identities=40% Similarity=0.661 Sum_probs=105.8
Q ss_pred EEEEEEEEEECCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCCCChHHHhhcCeE
Q 000720 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1287 (1333)
Q Consensus 1208 I~f~nVsf~Y~~~~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~i~l~~LRs~isi 1287 (1333)
|+++|++++|+.+. .+|+|+||+|++||.+||+|++|||||||+++|.|+.+|++|+|.+||.++++.+...+|+.+++
T Consensus 1 l~~~~l~~~~~~~~-~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~ 79 (236)
T cd03253 1 IEFENVTFAYDPGR-PVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGV 79 (236)
T ss_pred CEEEEEEEEeCCCC-ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 57999999996443 49999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccccccccchhhhcCCC-CCCCHHHHHHHHHhCCCCcc
Q 000720 1288 IPQDPMLFQGTVRTNLDPL-EQHSDQEIWEVKISKLLTHK 1326 (1333)
Q Consensus 1288 VpQdp~LF~GTIR~NLdp~-~~~sDeeI~~aL~~~~L~~~ 1326 (1333)
+||+|.+|++|+++|+... ...+++++.++++.+++.+.
T Consensus 80 ~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~ 119 (236)
T cd03253 80 VPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDK 119 (236)
T ss_pred ECCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHH
Confidence 9999999999999999754 34567788888888777543
No 463
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.76 E-value=1.7e-18 Score=192.73 Aligned_cols=102 Identities=30% Similarity=0.543 Sum_probs=94.5
Q ss_pred CcccEEEEEEEEEECCC-CCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCCCChHHHh
Q 000720 1204 SSGKIELENLLVQYNPT-LPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLR 1282 (1333)
Q Consensus 1204 ~~G~I~f~nVsf~Y~~~-~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~i~l~~LR 1282 (1333)
..|.|+++|++++|+.. ..++|+|+||+|++||.+||+|++|||||||+++|.|+.+|++|+|.+||.++...+....|
T Consensus 8 ~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 87 (226)
T cd03248 8 LKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLH 87 (226)
T ss_pred cCceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHH
Confidence 35789999999999642 23599999999999999999999999999999999999999999999999999988888889
Q ss_pred hcCeEecccccccccchhhhcCC
Q 000720 1283 SRLSIIPQDPMLFQGTVRTNLDP 1305 (1333)
Q Consensus 1283 s~isiVpQdp~LF~GTIR~NLdp 1305 (1333)
++++++||+|.+|++|+++|++.
T Consensus 88 ~~i~~~~q~~~l~~~tv~~nl~~ 110 (226)
T cd03248 88 SKVSLVGQEPVLFARSLQDNIAY 110 (226)
T ss_pred hhEEEEecccHHHhhhHHHHhcc
Confidence 99999999999999999999984
No 464
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.76 E-value=1e-18 Score=192.81 Aligned_cols=118 Identities=25% Similarity=0.353 Sum_probs=102.2
Q ss_pred EEEEEEEEEECCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCCCChH---HHhhc
Q 000720 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQ---DLRSR 1284 (1333)
Q Consensus 1208 I~f~nVsf~Y~~~~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~i~l~---~LRs~ 1284 (1333)
|+++|++++|+.+ ..+|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.|+.+++.. .+|++
T Consensus 2 l~~~~l~~~~~~~-~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (214)
T TIGR02673 2 IEFHNVSKAYPGG-VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRR 80 (214)
T ss_pred EEEEeeeEEeCCC-ceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhh
Confidence 7899999999533 3599999999999999999999999999999999999999999999999999987654 47889
Q ss_pred CeEecccccccc-cchhhhcCCC----C---CCCHHHHHHHHHhCCCCcc
Q 000720 1285 LSIIPQDPMLFQ-GTVRTNLDPL----E---QHSDQEIWEVKISKLLTHK 1326 (1333)
Q Consensus 1285 isiVpQdp~LF~-GTIR~NLdp~----~---~~sDeeI~~aL~~~~L~~~ 1326 (1333)
++++||+|.+|. .|+++|+... + +..+++++++++..+|.+.
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 130 (214)
T TIGR02673 81 IGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHK 130 (214)
T ss_pred eEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhh
Confidence 999999999996 6999999632 1 1235678999999999754
No 465
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=1.5e-18 Score=198.91 Aligned_cols=120 Identities=22% Similarity=0.300 Sum_probs=104.8
Q ss_pred cEEEEEEEEEECCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCCCChHHHhhcCe
Q 000720 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLS 1286 (1333)
Q Consensus 1207 ~I~f~nVsf~Y~~~~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~i~l~~LRs~is 1286 (1333)
-|+++||+++|+...+++|+|+||+|++||.+||+|++|||||||+++|.|+.+|++|+|.+||.|+.+.+...+|++|+
T Consensus 5 ~l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 84 (279)
T PRK13635 5 IIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVG 84 (279)
T ss_pred eEEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheE
Confidence 48999999999643445999999999999999999999999999999999999999999999999999988888999999
Q ss_pred Eecccc--cccccchhhhcCCCC---CCC----HHHHHHHHHhCCCCcc
Q 000720 1287 IIPQDP--MLFQGTVRTNLDPLE---QHS----DQEIWEVKISKLLTHK 1326 (1333)
Q Consensus 1287 iVpQdp--~LF~GTIR~NLdp~~---~~s----DeeI~~aL~~~~L~~~ 1326 (1333)
++||+| .+++.|+++||.... ..+ ++++.++|+.++|.+.
T Consensus 85 ~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~ 133 (279)
T PRK13635 85 MVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDF 133 (279)
T ss_pred EEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhh
Confidence 999998 567889999996421 123 3457889999999654
No 466
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.76 E-value=1.3e-18 Score=191.81 Aligned_cols=118 Identities=32% Similarity=0.514 Sum_probs=102.4
Q ss_pred cEEEEEEEEEECCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCCCChHHHhhcCe
Q 000720 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLS 1286 (1333)
Q Consensus 1207 ~I~f~nVsf~Y~~~~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~i~l~~LRs~is 1286 (1333)
.++.+|++|+|.. .++|+|+||+|++||.++|+||+|||||||+++|.|+..|.+|+|.+||.||.+++..++-++++
T Consensus 2 ~L~~~~ls~~y~~--~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia 79 (258)
T COG1120 2 MLEVENLSFGYGG--KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLA 79 (258)
T ss_pred eeEEEEEEEEECC--eeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEE
Confidence 4789999999973 35999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Eecccc-cccccchhhhcC----C----CCCCC--HH-HHHHHHHhCCCCcc
Q 000720 1287 IIPQDP-MLFQGTVRTNLD----P----LEQHS--DQ-EIWEVKISKLLTHK 1326 (1333)
Q Consensus 1287 iVpQdp-~LF~GTIR~NLd----p----~~~~s--De-eI~~aL~~~~L~~~ 1326 (1333)
+|||++ .-|.-||+|=+. | +...+ |+ .+.+||+.+++.+.
T Consensus 80 ~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~l 131 (258)
T COG1120 80 YVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHL 131 (258)
T ss_pred EeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHH
Confidence 999996 456669988764 3 22223 33 57788999998764
No 467
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=1.5e-18 Score=199.77 Aligned_cols=118 Identities=25% Similarity=0.397 Sum_probs=101.3
Q ss_pred cEEEEEEEEEECCCC---CCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCCC----ChH
Q 000720 1207 KIELENLLVQYNPTL---PMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMI----GLQ 1279 (1333)
Q Consensus 1207 ~I~f~nVsf~Y~~~~---p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~i----~l~ 1279 (1333)
.|+++||+++|+++. +++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.++... +..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIR 81 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 389999999996432 3599999999999999999999999999999999999999999999999999764 356
Q ss_pred HHhhcCeEecccc--cccccchhhhcCCCC---CCC----HHHHHHHHHhCCCC
Q 000720 1280 DLRSRLSIIPQDP--MLFQGTVRTNLDPLE---QHS----DQEIWEVKISKLLT 1324 (1333)
Q Consensus 1280 ~LRs~isiVpQdp--~LF~GTIR~NLdp~~---~~s----DeeI~~aL~~~~L~ 1324 (1333)
.+|++|++|||+| .+|+.|+++||.... ..+ ++.+.++|+.++|.
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~ 135 (286)
T PRK13646 82 PVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFS 135 (286)
T ss_pred HHHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCC
Confidence 7899999999998 689999999996321 123 34567899999996
No 468
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.76 E-value=1.6e-18 Score=194.08 Aligned_cols=117 Identities=32% Similarity=0.441 Sum_probs=101.2
Q ss_pred EEEEEEEEEECCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCCCCh---HHHhhc
Q 000720 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGL---QDLRSR 1284 (1333)
Q Consensus 1208 I~f~nVsf~Y~~~~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~i~l---~~LRs~ 1284 (1333)
|+++|++++|.. . ++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.++.+.+. ..+|++
T Consensus 1 l~~~~l~~~~~~-~-~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 78 (235)
T cd03261 1 IELRGLTKSFGG-R-TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRR 78 (235)
T ss_pred CeEEEEEEEECC-E-EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcc
Confidence 578999999953 3 49999999999999999999999999999999999999999999999999988764 567899
Q ss_pred CeEeccccccccc-chhhhcCCC----CCCC----HHHHHHHHHhCCCCcc
Q 000720 1285 LSIIPQDPMLFQG-TVRTNLDPL----EQHS----DQEIWEVKISKLLTHK 1326 (1333)
Q Consensus 1285 isiVpQdp~LF~G-TIR~NLdp~----~~~s----DeeI~~aL~~~~L~~~ 1326 (1333)
+++|||+|.+|.+ |+++|+... ...+ ++++.++|++++|.+.
T Consensus 79 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 129 (235)
T cd03261 79 MGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGA 129 (235)
T ss_pred eEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchh
Confidence 9999999999986 999999632 1122 3457889999999654
No 469
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.76 E-value=2.3e-18 Score=191.35 Aligned_cols=117 Identities=26% Similarity=0.331 Sum_probs=104.6
Q ss_pred cEEEEEEEEEECCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCCCChHHHhhcCe
Q 000720 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLS 1286 (1333)
Q Consensus 1207 ~I~f~nVsf~Y~~~~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~i~l~~LRs~is 1286 (1333)
.|+++||+++|.. . ++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.+.+...+|++++
T Consensus 7 ~i~~~~l~~~~~~-~-~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 84 (225)
T PRK10247 7 LLQLQNVGYLAGD-A-KILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVS 84 (225)
T ss_pred eEEEeccEEeeCC-c-eeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccE
Confidence 5999999999953 3 4999999999999999999999999999999999999999999999999999998888999999
Q ss_pred EecccccccccchhhhcCC----CCC-CCHHHHHHHHHhCCCCc
Q 000720 1287 IIPQDPMLFQGTVRTNLDP----LEQ-HSDQEIWEVKISKLLTH 1325 (1333)
Q Consensus 1287 iVpQdp~LF~GTIR~NLdp----~~~-~sDeeI~~aL~~~~L~~ 1325 (1333)
++||+|.+|+.|+++|+.. ... ..++++.++|++++|.+
T Consensus 85 ~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~ 128 (225)
T PRK10247 85 YCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPD 128 (225)
T ss_pred EEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCCh
Confidence 9999999999999999963 111 23456789999999964
No 470
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.76 E-value=1.8e-18 Score=191.49 Aligned_cols=118 Identities=22% Similarity=0.355 Sum_probs=101.2
Q ss_pred EEEEEEEEEECCCC--CCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCCCChHHHhhcC
Q 000720 1208 IELENLLVQYNPTL--PMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRL 1285 (1333)
Q Consensus 1208 I~f~nVsf~Y~~~~--p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~i~l~~LRs~i 1285 (1333)
|+++||+++|+... +++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.. ...++|+++
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-~~~~~~~~i 80 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK-EPAEARRRL 80 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEccc-CHHHHHhhE
Confidence 78999999996431 259999999999999999999999999999999999999999999999999986 456789999
Q ss_pred eEeccccccccc-chhhhcCCC---CC----CCHHHHHHHHHhCCCCcc
Q 000720 1286 SIIPQDPMLFQG-TVRTNLDPL---EQ----HSDQEIWEVKISKLLTHK 1326 (1333)
Q Consensus 1286 siVpQdp~LF~G-TIR~NLdp~---~~----~sDeeI~~aL~~~~L~~~ 1326 (1333)
+++||+|.+|.+ |+++|+... .. ..++++.+++++.+|.+.
T Consensus 81 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 129 (218)
T cd03266 81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEEL 129 (218)
T ss_pred EEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHH
Confidence 999999999986 999999521 11 124578889999999653
No 471
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.76 E-value=2.4e-18 Score=192.60 Aligned_cols=117 Identities=32% Similarity=0.509 Sum_probs=102.2
Q ss_pred EEEEEEEEEECCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCCCChHHHhhcCeE
Q 000720 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1287 (1333)
Q Consensus 1208 I~f~nVsf~Y~~~~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~i~l~~LRs~isi 1287 (1333)
|+++|++++|.....++|+|+||++++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.+.+...+|+++++
T Consensus 1 i~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (234)
T cd03251 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGL 80 (234)
T ss_pred CEEEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 57999999996443359999999999999999999999999999999999999999999999999998888899999999
Q ss_pred ecccccccccchhhhcCCC-CCCCHHHHHHHHHhCCCC
Q 000720 1288 IPQDPMLFQGTVRTNLDPL-EQHSDQEIWEVKISKLLT 1324 (1333)
Q Consensus 1288 VpQdp~LF~GTIR~NLdp~-~~~sDeeI~~aL~~~~L~ 1324 (1333)
+||+|.+|++|+++|+... ..++.+++.++++.+++.
T Consensus 81 ~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~ 118 (234)
T cd03251 81 VSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAH 118 (234)
T ss_pred eCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcH
Confidence 9999999999999999754 234556666666665554
No 472
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.76 E-value=1.1e-18 Score=192.49 Aligned_cols=118 Identities=26% Similarity=0.356 Sum_probs=101.3
Q ss_pred EEEEEEEEEECCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCCCCh---HHHhhc
Q 000720 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGL---QDLRSR 1284 (1333)
Q Consensus 1208 I~f~nVsf~Y~~~~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~i~l---~~LRs~ 1284 (1333)
|+++|++++|+.+ +.+|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.|+.+.+. ...|++
T Consensus 1 l~~~~l~~~~~~~-~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 79 (214)
T cd03292 1 IEFINVTKTYPNG-TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRK 79 (214)
T ss_pred CEEEEEEEEeCCC-ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHh
Confidence 4789999999643 359999999999999999999999999999999999999999999999999988764 357889
Q ss_pred CeEeccccccccc-chhhhcCCC---CCC----CHHHHHHHHHhCCCCcc
Q 000720 1285 LSIIPQDPMLFQG-TVRTNLDPL---EQH----SDQEIWEVKISKLLTHK 1326 (1333)
Q Consensus 1285 isiVpQdp~LF~G-TIR~NLdp~---~~~----sDeeI~~aL~~~~L~~~ 1326 (1333)
+++|||+|.+|.+ |+++|+... ... .++++.++++.++|.+.
T Consensus 80 i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 129 (214)
T cd03292 80 IGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHK 129 (214)
T ss_pred eEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHH
Confidence 9999999999985 999999632 111 24568899999998654
No 473
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.76 E-value=2.1e-18 Score=188.97 Aligned_cols=115 Identities=24% Similarity=0.356 Sum_probs=98.8
Q ss_pred EEEEEEEEECCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCCCChHHHhhcCeEe
Q 000720 1209 ELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSII 1288 (1333)
Q Consensus 1209 ~f~nVsf~Y~~~~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~i~l~~LRs~isiV 1288 (1333)
+++|++++|+.+ ..+|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.++.. ...|++++++
T Consensus 1 ~~~~l~~~~~~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~i~~~ 76 (205)
T cd03226 1 RIENISFSYKKG-TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA---KERRKSIGYV 76 (205)
T ss_pred CcccEEEEeCCc-CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh---HHhhcceEEE
Confidence 468999999642 359999999999999999999999999999999999999999999999999864 5678899999
Q ss_pred cccc--cccccchhhhcCCCC---CCCHHHHHHHHHhCCCCccc
Q 000720 1289 PQDP--MLFQGTVRTNLDPLE---QHSDQEIWEVKISKLLTHKS 1327 (1333)
Q Consensus 1289 pQdp--~LF~GTIR~NLdp~~---~~sDeeI~~aL~~~~L~~~~ 1327 (1333)
||+| .+|+.|+++|+.... ...++++.++|++++|.+..
T Consensus 77 ~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~ 120 (205)
T cd03226 77 MQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALK 120 (205)
T ss_pred ecChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhc
Confidence 9998 478899999997431 12346799999999997643
No 474
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.75 E-value=2.7e-18 Score=196.28 Aligned_cols=120 Identities=26% Similarity=0.407 Sum_probs=103.2
Q ss_pred cEEEEEEEEEECCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCCCChHHHhhcCe
Q 000720 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLS 1286 (1333)
Q Consensus 1207 ~I~f~nVsf~Y~~~~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~i~l~~LRs~is 1286 (1333)
.|+++|++++|+.+.+++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.|+.+.+...+|++++
T Consensus 7 ~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~ 86 (271)
T PRK13632 7 MIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIG 86 (271)
T ss_pred EEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceE
Confidence 58999999999643445999999999999999999999999999999999999999999999999999888889999999
Q ss_pred Eecccc--cccccchhhhcCCC---CCCCHH----HHHHHHHhCCCCcc
Q 000720 1287 IIPQDP--MLFQGTVRTNLDPL---EQHSDQ----EIWEVKISKLLTHK 1326 (1333)
Q Consensus 1287 iVpQdp--~LF~GTIR~NLdp~---~~~sDe----eI~~aL~~~~L~~~ 1326 (1333)
++||+| .++..|+++||... ...+++ .+.+++++.+|.+.
T Consensus 87 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 135 (271)
T PRK13632 87 IIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDY 135 (271)
T ss_pred EEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHH
Confidence 999998 45678999999642 122333 36778899998643
No 475
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.75 E-value=2.1e-18 Score=193.85 Aligned_cols=118 Identities=31% Similarity=0.431 Sum_probs=101.7
Q ss_pred EEEEEEEEEECCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCCCC---hHHHhhc
Q 000720 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIG---LQDLRSR 1284 (1333)
Q Consensus 1208 I~f~nVsf~Y~~~~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~i~---l~~LRs~ 1284 (1333)
++++||+++|..+ ..+|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.|+...+ ...+|++
T Consensus 1 l~~~~l~~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (241)
T cd03256 1 IEVENLSKTYPNG-KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQ 79 (241)
T ss_pred CEEeeEEEecCCc-cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhc
Confidence 4789999999642 34999999999999999999999999999999999999999999999999999887 5678999
Q ss_pred CeEecccccccc-cchhhhcCCC------------C---CCCHHHHHHHHHhCCCCcc
Q 000720 1285 LSIIPQDPMLFQ-GTVRTNLDPL------------E---QHSDQEIWEVKISKLLTHK 1326 (1333)
Q Consensus 1285 isiVpQdp~LF~-GTIR~NLdp~------------~---~~sDeeI~~aL~~~~L~~~ 1326 (1333)
++++||++.+|. .|+++|+... + +..++++.++|+.++|.+.
T Consensus 80 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 137 (241)
T cd03256 80 IGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDK 137 (241)
T ss_pred cEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhh
Confidence 999999999887 6999999521 1 1224568889999999653
No 476
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.75 E-value=2.4e-18 Score=184.17 Aligned_cols=95 Identities=38% Similarity=0.606 Sum_probs=88.4
Q ss_pred EEEEEEEEEECCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCCCChHHHhhcCeE
Q 000720 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1287 (1333)
Q Consensus 1208 I~f~nVsf~Y~~~~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~i~l~~LRs~isi 1287 (1333)
|+++|++++|+...+++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.+. ...+|+++++
T Consensus 1 i~~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~~ 79 (178)
T cd03247 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-EKALSSLISV 79 (178)
T ss_pred CEEEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-HHHHHhhEEE
Confidence 579999999965434599999999999999999999999999999999999999999999999999877 6788999999
Q ss_pred ecccccccccchhhhc
Q 000720 1288 IPQDPMLFQGTVRTNL 1303 (1333)
Q Consensus 1288 VpQdp~LF~GTIR~NL 1303 (1333)
+||+|.+|++|+++|+
T Consensus 80 ~~q~~~~~~~tv~~~i 95 (178)
T cd03247 80 LNQRPYLFDTTLRNNL 95 (178)
T ss_pred EccCCeeecccHHHhh
Confidence 9999999999999996
No 477
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.75 E-value=3e-18 Score=195.89 Aligned_cols=116 Identities=28% Similarity=0.399 Sum_probs=104.1
Q ss_pred cEEEEEEEEEECCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCCCChHHHhhcCe
Q 000720 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLS 1286 (1333)
Q Consensus 1207 ~I~f~nVsf~Y~~~~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~i~l~~LRs~is 1286 (1333)
.|+++||+.+|.+.. ||+|+|++|+.||.+++||||||||||+++++.||.+|++|+|.|||.|++++++.+ ++|+
T Consensus 3 ~i~l~~v~K~yg~~~--~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~--R~ia 78 (338)
T COG3839 3 ELELKNVRKSFGSFE--VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK--RGIA 78 (338)
T ss_pred EEEEeeeEEEcCCce--eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhH--CCEE
Confidence 689999999997543 999999999999999999999999999999999999999999999999999999988 8999
Q ss_pred Eeccccccccc-chhhhcCCC-C------CCCHHHHHHHHHhCCCCcc
Q 000720 1287 IIPQDPMLFQG-TVRTNLDPL-E------QHSDQEIWEVKISKLLTHK 1326 (1333)
Q Consensus 1287 iVpQdp~LF~G-TIR~NLdp~-~------~~sDeeI~~aL~~~~L~~~ 1326 (1333)
+|+|+..||+- ||++||... . +--|+++.++++..+|.+.
T Consensus 79 mVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~l 126 (338)
T COG3839 79 MVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHL 126 (338)
T ss_pred EEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhH
Confidence 99999999976 999999743 2 1236778899999888764
No 478
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.75 E-value=2.4e-18 Score=193.05 Aligned_cols=118 Identities=36% Similarity=0.608 Sum_probs=103.2
Q ss_pred EEEEEEEEEECCC-CCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCCCChHHHhhcCe
Q 000720 1208 IELENLLVQYNPT-LPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLS 1286 (1333)
Q Consensus 1208 I~f~nVsf~Y~~~-~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~i~l~~LRs~is 1286 (1333)
|+++|++++|... ..++|+|+||++++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.+.+....|++++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 4789999999642 235999999999999999999999999999999999999999999999999999888888899999
Q ss_pred EecccccccccchhhhcCCC-CCCCHHHHHHHHHhCCCCc
Q 000720 1287 IIPQDPMLFQGTVRTNLDPL-EQHSDQEIWEVKISKLLTH 1325 (1333)
Q Consensus 1287 iVpQdp~LF~GTIR~NLdp~-~~~sDeeI~~aL~~~~L~~ 1325 (1333)
++||+|.+|++|+++|+... ...+.+++.+.++.+++.+
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~ 120 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHD 120 (238)
T ss_pred EECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHH
Confidence 99999999999999999753 3345667777777766643
No 479
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.75 E-value=2.7e-18 Score=197.76 Aligned_cols=117 Identities=25% Similarity=0.339 Sum_probs=101.1
Q ss_pred EEEEEEEEEECCCC---CCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCC----CChHH
Q 000720 1208 IELENLLVQYNPTL---PMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISM----IGLQD 1280 (1333)
Q Consensus 1208 I~f~nVsf~Y~~~~---p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~----i~l~~ 1280 (1333)
|+|+||+++|+++. +++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.++.. .+...
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 78999999997443 259999999999999999999999999999999999999999999999999963 34678
Q ss_pred HhhcCeEecccc--cccccchhhhcCCCC---CCC----HHHHHHHHHhCCCC
Q 000720 1281 LRSRLSIIPQDP--MLFQGTVRTNLDPLE---QHS----DQEIWEVKISKLLT 1324 (1333)
Q Consensus 1281 LRs~isiVpQdp--~LF~GTIR~NLdp~~---~~s----DeeI~~aL~~~~L~ 1324 (1333)
+|+++++|+|+| .+|++|+.+|+.... ..+ ++++.++|+.++|.
T Consensus 82 ~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~ 134 (288)
T PRK13643 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLA 134 (288)
T ss_pred HHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCC
Confidence 899999999998 799999999996321 122 34578899999995
No 480
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.75 E-value=2.9e-18 Score=186.96 Aligned_cols=141 Identities=17% Similarity=0.135 Sum_probs=106.0
Q ss_pred CeEeeCCc-EEEEECCCCCChhHHHHHHh--------CCCcCCCCcEEEECCeEEEEcCCCCCCCCCHHHHhccCCcCCH
Q 000720 617 KMKIMKGS-KVAVCGSVGSGKSSLLSSIL--------GEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQ 687 (1333)
Q Consensus 617 nl~i~~Ge-~~~ivG~~GsGKSTLl~~il--------G~~~~~~G~~i~~~g~iayv~Q~~~i~~~Tv~enI~~g~~~~~ 687 (1333)
|+++.+|+ +++|+||||||||||+++|. |...|..... .++|+.|.-- .+
T Consensus 21 ~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~~-----~~~~~~~~~~----------~l------ 79 (200)
T cd03280 21 DIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGS-----SLPVFENIFA----------DI------ 79 (200)
T ss_pred eEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccccc-----cCcCccEEEE----------ec------
Confidence 89999995 79999999999999999998 5333322111 2333333210 00
Q ss_pred HHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 000720 688 SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL 767 (1333)
Q Consensus 688 ~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~ 767 (1333)
++...+.+...++|+||||+..+++++ .+|+++++|||++++|+..+..+...+++.+
T Consensus 80 ---------------------g~~~~l~~~~s~fs~g~~~~~~i~~~~-~~p~llllDEp~~glD~~~~~~i~~~~l~~l 137 (200)
T cd03280 80 ---------------------GDEQSIEQSLSTFSSHMKNIARILQHA-DPDSLVLLDELGSGTDPVEGAALAIAILEEL 137 (200)
T ss_pred ---------------------CchhhhhcCcchHHHHHHHHHHHHHhC-CCCcEEEEcCCCCCCCHHHHHHHHHHHHHHH
Confidence 001112245578999999999999985 8999999999999999999888876666554
Q ss_pred h-CCCeEEEecCchhhhhcCCEEEEEeCCeEEEc
Q 000720 768 L-SQKTVLYTTHQLEFLDAADLVLVMKDGKIEQS 800 (1333)
Q Consensus 768 ~-~~~TvIlvtH~~~~l~~aD~i~vl~~G~i~~~ 800 (1333)
. .+.|+|++||+.+....+|+++.|++|++...
T Consensus 138 ~~~~~~vi~~tH~~~l~~~~d~~~~l~~g~l~~~ 171 (200)
T cd03280 138 LERGALVIATTHYGELKAYAYKREGVENASMEFD 171 (200)
T ss_pred HhcCCEEEEECCHHHHHHHHhcCCCeEEEEEEEe
Confidence 4 47899999999766677999999999999765
No 481
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.75 E-value=4e-18 Score=194.53 Aligned_cols=118 Identities=25% Similarity=0.400 Sum_probs=102.2
Q ss_pred cccEEEEEEEEEECCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccC-----CCCCeEEEcCEeCC--CCC
Q 000720 1205 SGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVE-----PSGGRILIDGVDIS--MIG 1277 (1333)
Q Consensus 1205 ~G~I~f~nVsf~Y~~~~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~e-----p~~G~I~IDGvdI~--~i~ 1277 (1333)
...|+++||+++|+. ..+|+|+||+|++||++||+|++|||||||+++|.|+++ |++|+|.+||.|+. +.+
T Consensus 11 ~~~l~i~nl~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~ 88 (269)
T PRK14259 11 NIIISLQNVTISYGT--FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVD 88 (269)
T ss_pred CceEEEEeEEEEECC--EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCC
Confidence 347999999999964 249999999999999999999999999999999999987 58999999999986 356
Q ss_pred hHHHhhcCeEecccccccccchhhhcCCCC---CC---CHHHHHHHHHhCCCC
Q 000720 1278 LQDLRSRLSIIPQDPMLFQGTVRTNLDPLE---QH---SDQEIWEVKISKLLT 1324 (1333)
Q Consensus 1278 l~~LRs~isiVpQdp~LF~GTIR~NLdp~~---~~---sDeeI~~aL~~~~L~ 1324 (1333)
..++|++++++||+|.+|.+|+++||.... .. .++++.++++.+++.
T Consensus 89 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~ 141 (269)
T PRK14259 89 PVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVW 141 (269)
T ss_pred HHHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCc
Confidence 778899999999999999999999997431 11 245678889998874
No 482
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.75 E-value=3.6e-18 Score=194.14 Aligned_cols=118 Identities=28% Similarity=0.401 Sum_probs=102.3
Q ss_pred cccEEEEEEEEEECCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccC-----CCCCeEEEcCEeCCC--CC
Q 000720 1205 SGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVE-----PSGGRILIDGVDISM--IG 1277 (1333)
Q Consensus 1205 ~G~I~f~nVsf~Y~~~~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~e-----p~~G~I~IDGvdI~~--i~ 1277 (1333)
.+.|+++|++++|+. . ++|+|+||+|++||.+||+|++|||||||+++|.|+++ |++|+|.+||.++.+ .+
T Consensus 11 ~~~l~~~~l~~~~~~-~-~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~ 88 (260)
T PRK10744 11 PSKIQVRNLNFYYGK-F-HALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQD 88 (260)
T ss_pred CceEEEEEEEEEeCC-e-EEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccc
Confidence 467999999999963 3 59999999999999999999999999999999999986 589999999999964 45
Q ss_pred hHHHhhcCeEecccccccccchhhhcCCC----CCCC----HHHHHHHHHhCCCC
Q 000720 1278 LQDLRSRLSIIPQDPMLFQGTVRTNLDPL----EQHS----DQEIWEVKISKLLT 1324 (1333)
Q Consensus 1278 l~~LRs~isiVpQdp~LF~GTIR~NLdp~----~~~s----DeeI~~aL~~~~L~ 1324 (1333)
...+|++++++||+|.+|+.|+++|+... +..+ +++++++++.+++.
T Consensus 89 ~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 143 (260)
T PRK10744 89 IALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALW 143 (260)
T ss_pred hHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCC
Confidence 67889999999999999999999999642 1122 35688999999974
No 483
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.75 E-value=2.2e-18 Score=189.24 Aligned_cols=115 Identities=23% Similarity=0.339 Sum_probs=100.8
Q ss_pred EEEEEEEEEECCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCCCChHHHhhcCeE
Q 000720 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1287 (1333)
Q Consensus 1208 I~f~nVsf~Y~~~~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~i~l~~LRs~isi 1287 (1333)
|+++||+++|. + .++|+|+||++++||.++|+|++|||||||+++|.|+.+|++|+|.+||.++.+. .++|+++++
T Consensus 1 l~~~~l~~~~~-~-~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~~~i~~ 76 (208)
T cd03268 1 LKTNDLTKTYG-K-KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN--IEALRRIGA 76 (208)
T ss_pred CEEEEEEEEEC-C-eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch--HHHHhhEEE
Confidence 57899999995 3 3599999999999999999999999999999999999999999999999999765 677889999
Q ss_pred eccccccc-ccchhhhcCCC---CCCCHHHHHHHHHhCCCCcc
Q 000720 1288 IPQDPMLF-QGTVRTNLDPL---EQHSDQEIWEVKISKLLTHK 1326 (1333)
Q Consensus 1288 VpQdp~LF-~GTIR~NLdp~---~~~sDeeI~~aL~~~~L~~~ 1326 (1333)
+||+|.+| +.|+++|+... ...+++++.++|+..+|.+.
T Consensus 77 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~ 119 (208)
T cd03268 77 LIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDS 119 (208)
T ss_pred ecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHH
Confidence 99999888 57999999642 12357789999999999653
No 484
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.75 E-value=2.8e-18 Score=193.12 Aligned_cols=117 Identities=31% Similarity=0.422 Sum_probs=100.4
Q ss_pred EEEEEEEEEECCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCCCCh---HHHhhc
Q 000720 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGL---QDLRSR 1284 (1333)
Q Consensus 1208 I~f~nVsf~Y~~~~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~i~l---~~LRs~ 1284 (1333)
|+++||+++|+.+ +++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.+++. ..+|++
T Consensus 2 l~~~~l~~~~~~~-~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (243)
T TIGR02315 2 LEVENLSKVYPNG-KQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRR 80 (243)
T ss_pred eEEEeeeeecCCC-cceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhh
Confidence 6899999999633 359999999999999999999999999999999999999999999999999987764 457899
Q ss_pred CeEecccccccc-cchhhhcCCCC---------------CCCHHHHHHHHHhCCCCc
Q 000720 1285 LSIIPQDPMLFQ-GTVRTNLDPLE---------------QHSDQEIWEVKISKLLTH 1325 (1333)
Q Consensus 1285 isiVpQdp~LF~-GTIR~NLdp~~---------------~~sDeeI~~aL~~~~L~~ 1325 (1333)
++++||+|.+|. .|+++|+.... ...++++.++++.++|.+
T Consensus 81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 137 (243)
T TIGR02315 81 IGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLAD 137 (243)
T ss_pred eEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHh
Confidence 999999999886 59999995310 112456888999999864
No 485
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.75 E-value=2.2e-18 Score=189.71 Aligned_cols=118 Identities=29% Similarity=0.414 Sum_probs=101.3
Q ss_pred EEEEEEEEECCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCCCChHHHhhcCeEe
Q 000720 1209 ELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSII 1288 (1333)
Q Consensus 1209 ~f~nVsf~Y~~~~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~i~l~~LRs~isiV 1288 (1333)
+++|++++|+.+...+|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.+.+....|++++++
T Consensus 1 ~~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (211)
T cd03225 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLV 80 (211)
T ss_pred CceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEE
Confidence 47899999965323599999999999999999999999999999999999999999999999999988888899999999
Q ss_pred cccc--cccccchhhhcCCC---CCCC----HHHHHHHHHhCCCCcc
Q 000720 1289 PQDP--MLFQGTVRTNLDPL---EQHS----DQEIWEVKISKLLTHK 1326 (1333)
Q Consensus 1289 pQdp--~LF~GTIR~NLdp~---~~~s----DeeI~~aL~~~~L~~~ 1326 (1333)
||+| .+++.|+++|+... ...+ ++++.++++..+|.+.
T Consensus 81 ~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 127 (211)
T cd03225 81 FQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGL 127 (211)
T ss_pred ecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhh
Confidence 9998 46789999999642 1122 3467789999998643
No 486
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.75 E-value=2.9e-18 Score=197.08 Aligned_cols=119 Identities=30% Similarity=0.450 Sum_probs=102.0
Q ss_pred cEEEEEEEEEECCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCC--CCChHHHhhc
Q 000720 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDIS--MIGLQDLRSR 1284 (1333)
Q Consensus 1207 ~I~f~nVsf~Y~~~~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~--~i~l~~LRs~ 1284 (1333)
-|+++||+++|+++ ..+|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.|+. ..+..++|++
T Consensus 5 ~l~~~~l~~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ 83 (283)
T PRK13636 5 ILKVEELNYNYSDG-THALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRES 83 (283)
T ss_pred eEEEEeEEEEeCCC-CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhh
Confidence 48999999999633 34999999999999999999999999999999999999999999999999984 3456788999
Q ss_pred CeEecccc--cccccchhhhcCCC---CCCC----HHHHHHHHHhCCCCcc
Q 000720 1285 LSIIPQDP--MLFQGTVRTNLDPL---EQHS----DQEIWEVKISKLLTHK 1326 (1333)
Q Consensus 1285 isiVpQdp--~LF~GTIR~NLdp~---~~~s----DeeI~~aL~~~~L~~~ 1326 (1333)
++++||+| .+|+.|+++|+... ...+ ++.+.++++.++|.+.
T Consensus 84 ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~ 134 (283)
T PRK13636 84 VGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHL 134 (283)
T ss_pred EEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhh
Confidence 99999998 67899999999642 1223 2457888999999653
No 487
>PRK10908 cell division protein FtsE; Provisional
Probab=99.75 E-value=4.5e-18 Score=188.75 Aligned_cols=118 Identities=27% Similarity=0.364 Sum_probs=100.5
Q ss_pred EEEEEEEEEECCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCCCChHH---Hhhc
Q 000720 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQD---LRSR 1284 (1333)
Q Consensus 1208 I~f~nVsf~Y~~~~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~i~l~~---LRs~ 1284 (1333)
|+++|++++|+++ ..+|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.|+.+++.+. +|++
T Consensus 2 l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 80 (222)
T PRK10908 2 IRFEHVSKAYLGG-RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQ 80 (222)
T ss_pred EEEEeeEEEecCC-CeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhh
Confidence 7899999999533 35999999999999999999999999999999999999999999999999998877554 6889
Q ss_pred CeEecccccc-cccchhhhcCCC---CCCCH----HHHHHHHHhCCCCcc
Q 000720 1285 LSIIPQDPML-FQGTVRTNLDPL---EQHSD----QEIWEVKISKLLTHK 1326 (1333)
Q Consensus 1285 isiVpQdp~L-F~GTIR~NLdp~---~~~sD----eeI~~aL~~~~L~~~ 1326 (1333)
++++||+|.+ +..|+++|+... ...++ +++.++|+..++.+.
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 130 (222)
T PRK10908 81 IGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDK 130 (222)
T ss_pred eEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhh
Confidence 9999999987 467999999642 12232 357789999998653
No 488
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.75 E-value=2.3e-18 Score=193.64 Aligned_cols=117 Identities=26% Similarity=0.383 Sum_probs=102.9
Q ss_pred EEEEEEEEEECCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCCCChHHHhhcCeE
Q 000720 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1287 (1333)
Q Consensus 1208 I~f~nVsf~Y~~~~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~i~l~~LRs~isi 1287 (1333)
++++||+++|+++ ..+|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.+.+..++|+++++
T Consensus 1 l~~~~l~~~~~~~-~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (242)
T cd03295 1 IEFENVTKRYGGG-KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGY 79 (242)
T ss_pred CEEEEEEEEeCCc-ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEE
Confidence 4789999999753 349999999999999999999999999999999999999999999999999999888889999999
Q ss_pred ecccccccc-cchhhhcCCCC---CC----CHHHHHHHHHhCCCCc
Q 000720 1288 IPQDPMLFQ-GTVRTNLDPLE---QH----SDQEIWEVKISKLLTH 1325 (1333)
Q Consensus 1288 VpQdp~LF~-GTIR~NLdp~~---~~----sDeeI~~aL~~~~L~~ 1325 (1333)
+||+|.+|. .|+++|+.... .. .++++.+++++.+|.+
T Consensus 80 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~ 125 (242)
T cd03295 80 VIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDP 125 (242)
T ss_pred EccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCc
Confidence 999999996 69999996321 11 2456889999999974
No 489
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.75 E-value=2.3e-17 Score=191.48 Aligned_cols=207 Identities=23% Similarity=0.342 Sum_probs=161.3
Q ss_pred CCccEEEeeeEEEcCCcccccCCCcccccC-CeEeeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEEEECCe-----
Q 000720 587 SDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK----- 660 (1333)
Q Consensus 587 ~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i~~~g~----- 660 (1333)
.+...+++|.+..=+. ....+++ ||++.+||+++|.|-.|-|-+-|+.+|+|+.++.+|++ .++|+
T Consensus 254 g~~vL~V~~L~v~~~~-------~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I-~l~G~~v~~~ 325 (501)
T COG3845 254 GEVVLEVEDLSVKDRR-------GVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRI-LLNGKDVLGR 325 (501)
T ss_pred CCeEEEEeeeEeecCC-------CCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceE-EECCEecccc
Confidence 4556788887764322 2467889 99999999999999999999999999999999888986 66663
Q ss_pred ----------EEEEcCCC----CCCCCCHHHHhccCCcCCH-------HHHHHHHHHc-ccchHHHhhcCCCccccCCCC
Q 000720 661 ----------KAYVPQSS----WIQTGTIRENILFGKDMRQ-------SFYEEVLEGC-ALNQDIEMWADGDLSVVGERG 718 (1333)
Q Consensus 661 ----------iayv~Q~~----~i~~~Tv~enI~~g~~~~~-------~~~~~v~~~~-~l~~d~~~~~~g~~t~ig~~g 718 (1333)
+||||.+. .....|+.||+.++...++ -.++++.+.+ .+.+.++..+.+. ..+.
T Consensus 326 ~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~----~~~a 401 (501)
T COG3845 326 LSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSP----DAPA 401 (501)
T ss_pred CCHHHHHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCC----Ccch
Confidence 58999886 3578899999998654321 0111111111 1111122222222 2456
Q ss_pred CCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEecCchhhh-hcCCEEEEEeCCeE
Q 000720 719 INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFL-DAADLVLVMKDGKI 797 (1333)
Q Consensus 719 ~~LSGGQkqRv~LARAl~~~~~illLDEP~saLD~~~~~~l~~~~~~~~~~~~TvIlvtH~~~~l-~~aD~i~vl~~G~i 797 (1333)
.+||||++||+-+||-+..+||+++...||-|||....+.+.+.+++...+|+.|++++-|++++ ..||+|.||.+|+|
T Consensus 402 ~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIaVi~~Gri 481 (501)
T COG3845 402 RSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRI 481 (501)
T ss_pred hhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhheeeeeeCCce
Confidence 79999999999999999999999999999999999999999998888888899999999999986 55999999999999
Q ss_pred EEccChHH
Q 000720 798 EQSGKYED 805 (1333)
Q Consensus 798 ~~~g~~~~ 805 (1333)
+...++++
T Consensus 482 ~~~~~~~~ 489 (501)
T COG3845 482 VGIVPPEE 489 (501)
T ss_pred eccccccc
Confidence 98776665
No 490
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.75 E-value=5.4e-18 Score=194.76 Aligned_cols=121 Identities=20% Similarity=0.343 Sum_probs=105.1
Q ss_pred ccEEEEEEEEEECCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCC---CeEEEcCEeCCCCChHHHh
Q 000720 1206 GKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSG---GRILIDGVDISMIGLQDLR 1282 (1333)
Q Consensus 1206 G~I~f~nVsf~Y~~~~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~---G~I~IDGvdI~~i~l~~LR 1282 (1333)
+.|+++|++++|++...++|+|+||+|++||.+||+|++|||||||+++|.|+++|++ |+|.+||.++.+.+...+|
T Consensus 4 ~~l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~ 83 (282)
T PRK13640 4 NIVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIR 83 (282)
T ss_pred ceEEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHH
Confidence 4699999999996433359999999999999999999999999999999999999988 8999999999988888899
Q ss_pred hcCeEecccc--cccccchhhhcCCC---CCCCH----HHHHHHHHhCCCCcc
Q 000720 1283 SRLSIIPQDP--MLFQGTVRTNLDPL---EQHSD----QEIWEVKISKLLTHK 1326 (1333)
Q Consensus 1283 s~isiVpQdp--~LF~GTIR~NLdp~---~~~sD----eeI~~aL~~~~L~~~ 1326 (1333)
++++++||+| .+++.|+++||... ...++ +++.++++.++|.+.
T Consensus 84 ~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~ 136 (282)
T PRK13640 84 EKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDY 136 (282)
T ss_pred hheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhH
Confidence 9999999999 46789999999742 12333 457889999999754
No 491
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.75 E-value=3.9e-18 Score=195.50 Aligned_cols=118 Identities=25% Similarity=0.394 Sum_probs=103.2
Q ss_pred EEEEEEEEEECCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCCCChHHHhhcCeE
Q 000720 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1287 (1333)
Q Consensus 1208 I~f~nVsf~Y~~~~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~i~l~~LRs~isi 1287 (1333)
++++||+++|+.+. .+|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++...+...+|+++++
T Consensus 4 l~~~~l~~~~~~~~-~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 82 (277)
T PRK13652 4 IETRDLCYSYSGSK-EALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGL 82 (277)
T ss_pred EEEEEEEEEeCCCC-ceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheEE
Confidence 78999999996433 49999999999999999999999999999999999999999999999999998888899999999
Q ss_pred ecccc--cccccchhhhcCCCC---CCC----HHHHHHHHHhCCCCcc
Q 000720 1288 IPQDP--MLFQGTVRTNLDPLE---QHS----DQEIWEVKISKLLTHK 1326 (1333)
Q Consensus 1288 VpQdp--~LF~GTIR~NLdp~~---~~s----DeeI~~aL~~~~L~~~ 1326 (1333)
+||+| .+|+.|+++|+.... ..+ ++.+.++++.++|.+.
T Consensus 83 v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 130 (277)
T PRK13652 83 VFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEEL 130 (277)
T ss_pred EecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhH
Confidence 99998 478899999996311 222 3457899999999643
No 492
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.75 E-value=7.2e-18 Score=182.38 Aligned_cols=121 Identities=27% Similarity=0.394 Sum_probs=101.3
Q ss_pred EEEEEEEEEECCCC--CCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCCCChH---HH-
Q 000720 1208 IELENLLVQYNPTL--PMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQ---DL- 1281 (1333)
Q Consensus 1208 I~f~nVsf~Y~~~~--p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~i~l~---~L- 1281 (1333)
++++||+..|..+. -.||+|+||+|++||.|||+||||||||||++.|-++-.|++|.|.++|.|+..++-+ .+
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 57899999996442 2599999999999999999999999999999999999999999999999999999854 44
Q ss_pred hhcCeEeccccccccc-chhhhcC-C--CCC----CCHHHHHHHHHhCCCCcccc
Q 000720 1282 RSRLSIIPQDPMLFQG-TVRTNLD-P--LEQ----HSDQEIWEVKISKLLTHKSY 1328 (1333)
Q Consensus 1282 Rs~isiVpQdp~LF~G-TIR~NLd-p--~~~----~sDeeI~~aL~~~~L~~~~~ 1328 (1333)
|++||+|+|+..|++. |++||+. | +.. ..++.+.+.++.++|.+...
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~ 136 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLL 136 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhc
Confidence 4679999999998866 9999996 2 222 12456777888889985433
No 493
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=99.75 E-value=2.8e-15 Score=175.74 Aligned_cols=247 Identities=17% Similarity=0.210 Sum_probs=158.5
Q ss_pred HHHhcchHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------hccCCCCChH
Q 000720 1070 SESIAGATTIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLIILV------TLPRSAIDPS 1143 (1333)
Q Consensus 1070 ~Etl~G~~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~ll~~~~~~~~~~~~~------~~~~~~~~~g 1143 (1333)
++...+...|--|+.++.....-+...++.............|+++..+.+--+...+. .+++ ..+.+..+|.
T Consensus 269 ~rlr~NaE~iAFY~g~~~E~~~~~~~f~~Lv~~l~~l~~~r~~l~f~~n~~~Ylg~ils-y~vi~~p~Fs~h~y~~~s~a 347 (659)
T KOG0060|consen 269 SRLRVNAEEIAFYRGGQVEHQRTDQRFRNLVQHLRELMSFRFWLGFIDNIFDYLGGILS-YVVIAIPFFSGHVYDDLSPA 347 (659)
T ss_pred eeeeecchhhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhe-eeEEeeeeecccccCCcCHH
Confidence 34456667777777776666665555555555555666777888887776653222111 1111 1122334454
Q ss_pred HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcC----C-------------CCCCcccC-CCCCCCC
Q 000720 1144 LAGLAAT----YGLNLNVLQAWVIWNLCNVENKMISVERILQFTNI----P-------------SEAPLVIK-NSRPSPE 1201 (1333)
Q Consensus 1144 ~~gl~l~----y~l~l~~~l~~~v~~~~~le~~~~SveRI~~~~~~----p-------------~E~~~~~~-~~~~~~~ 1201 (1333)
..--.++ +.+.+...+..++....++..--+-..||.|+++. . .|..+... .+..+..
T Consensus 348 EL~~~i~~na~~~i~Li~~f~~l~~~~~~ls~lsGyt~Ri~el~~~l~d~~~~~~~~~~~~~~~~E~~~~l~~~~G~~~~ 427 (659)
T KOG0060|consen 348 ELSGLISNNAFVFIYLISAFGRLVDLSRDLSRLSGYTHRIGELMEVLDDLSSGSQECTMEEEELGEAEWGLSLPPGSGKA 427 (659)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHhccCCcchhhhhhhhhhhhhccCCCCCCccc
Confidence 3222221 11222222222222222222222335787777532 1 11111111 0112456
Q ss_pred CCCcccEEEEEEEEEECCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEE--cCEeCCCCChH
Q 000720 1202 WPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILI--DGVDISMIGLQ 1279 (1333)
Q Consensus 1202 wp~~G~I~f~nVsf~Y~~~~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~I--DGvdI~~i~l~ 1279 (1333)
||.+-.|+|++|++.=+.+.+...+|+||+|+.|+.+-|+|+||+|||||+..|-++++..+|+|.- ||-+
T Consensus 428 ~~~Dn~i~~e~v~l~tPt~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~------- 500 (659)
T KOG0060|consen 428 EPADNAIEFEEVSLSTPTNGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGP------- 500 (659)
T ss_pred ccccceEEeeeeeecCCCCCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCC-------
Confidence 7777889999999998766676677799999999999999999999999999999999999999875 3433
Q ss_pred HHhhcCeEecccccccccchhhhcC-CC-------CCCCHHHHHHHHHhCCCCccc
Q 000720 1280 DLRSRLSIIPQDPMLFQGTVRTNLD-PL-------EQHSDQEIWEVKISKLLTHKS 1327 (1333)
Q Consensus 1280 ~LRs~isiVpQdp~LF~GTIR~NLd-p~-------~~~sDeeI~~aL~~~~L~~~~ 1327 (1333)
+.+=++||.|++=.||+|+-+- |. +-.+|++|.+.||.++|.+.+
T Consensus 501 ---~~lfflPQrPYmt~GTLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~ 553 (659)
T KOG0060|consen 501 ---KDLFFLPQRPYMTLGTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLL 553 (659)
T ss_pred ---CceEEecCCCCccccchhheeeccCccccccccCCCHHHHHHHHHHhhhhhHH
Confidence 4588999999999999999984 42 237899999999999997654
No 494
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.74 E-value=3.1e-18 Score=191.56 Aligned_cols=119 Identities=29% Similarity=0.456 Sum_probs=101.6
Q ss_pred EEEEEEEEEECCCC--CCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCCCChHH---Hh
Q 000720 1208 IELENLLVQYNPTL--PMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQD---LR 1282 (1333)
Q Consensus 1208 I~f~nVsf~Y~~~~--p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~i~l~~---LR 1282 (1333)
|+++|++++|+... .++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.|+...+..+ .|
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 78999999996431 25999999999999999999999999999999999999999999999999998876544 58
Q ss_pred hcCeEecccccccc-cchhhhcCCC---CCC----CHHHHHHHHHhCCCCcc
Q 000720 1283 SRLSIIPQDPMLFQ-GTVRTNLDPL---EQH----SDQEIWEVKISKLLTHK 1326 (1333)
Q Consensus 1283 s~isiVpQdp~LF~-GTIR~NLdp~---~~~----sDeeI~~aL~~~~L~~~ 1326 (1333)
++++++||+|.+|. .|+++|+... ... .++++.++|+..+|.+.
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 133 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDK 133 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhh
Confidence 89999999999997 5999999631 111 24578899999998654
No 495
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.74 E-value=3e-18 Score=188.90 Aligned_cols=117 Identities=32% Similarity=0.457 Sum_probs=100.0
Q ss_pred EEEEEEEEEECCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCC--CChHHHhhcC
Q 000720 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISM--IGLQDLRSRL 1285 (1333)
Q Consensus 1208 I~f~nVsf~Y~~~~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~--i~l~~LRs~i 1285 (1333)
|+++||+++|.. .++|+|+||++++||++||+|++|||||||+++|.|+++|++|+|.+||.++.. .+...+|+++
T Consensus 1 l~~~~l~~~~~~--~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 78 (213)
T cd03262 1 IEIKNLHKSFGD--FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKV 78 (213)
T ss_pred CEEEEEEEEECC--eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcc
Confidence 578999999964 349999999999999999999999999999999999999999999999999953 4566789999
Q ss_pred eEecccccccc-cchhhhcCCC----CCCC----HHHHHHHHHhCCCCcc
Q 000720 1286 SIIPQDPMLFQ-GTVRTNLDPL----EQHS----DQEIWEVKISKLLTHK 1326 (1333)
Q Consensus 1286 siVpQdp~LF~-GTIR~NLdp~----~~~s----DeeI~~aL~~~~L~~~ 1326 (1333)
+++||+|.+|. .|+++|+... ...+ ++++.+++++.++.+.
T Consensus 79 ~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 128 (213)
T cd03262 79 GMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADK 128 (213)
T ss_pred eEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhH
Confidence 99999999986 6999999642 1222 3467889999998653
No 496
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.74 E-value=5.8e-18 Score=194.62 Aligned_cols=117 Identities=22% Similarity=0.298 Sum_probs=104.1
Q ss_pred ccEEEEEEEEEECCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCCCChHHHhhcC
Q 000720 1206 GKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRL 1285 (1333)
Q Consensus 1206 G~I~f~nVsf~Y~~~~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~i~l~~LRs~i 1285 (1333)
..|+|+||+.+|. + ..+++|+||+|++||.+.+.|||||||||++.+|.||..|++|+|.|||.||.+++.+. +.|
T Consensus 4 ~~l~i~~v~k~yg-~-~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~k--R~i 79 (352)
T COG3842 4 PALEIRNVSKSFG-D-FTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEK--RPI 79 (352)
T ss_pred ceEEEEeeeeecC-C-eeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhh--ccc
Confidence 4699999999997 3 45999999999999999999999999999999999999999999999999999988885 899
Q ss_pred eEecccccccc-cchhhhcCCC-C---CCCH----HHHHHHHHhCCCCcc
Q 000720 1286 SIIPQDPMLFQ-GTVRTNLDPL-E---QHSD----QEIWEVKISKLLTHK 1326 (1333)
Q Consensus 1286 siVpQdp~LF~-GTIR~NLdp~-~---~~sD----eeI~~aL~~~~L~~~ 1326 (1333)
++|+|+.-||+ -||++|+.+. . .-.+ +.+.++|+.++|.+.
T Consensus 80 g~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~ 129 (352)
T COG3842 80 GMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGF 129 (352)
T ss_pred ceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhh
Confidence 99999999995 5999999753 2 1233 368999999999875
No 497
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.74 E-value=6.2e-18 Score=187.51 Aligned_cols=119 Identities=29% Similarity=0.400 Sum_probs=100.9
Q ss_pred EEEEEEEEEECCCC--CCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCCCChHHH---h
Q 000720 1208 IELENLLVQYNPTL--PMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDL---R 1282 (1333)
Q Consensus 1208 I~f~nVsf~Y~~~~--p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~i~l~~L---R 1282 (1333)
|+++||+++|.+.. .++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.|+.+++..+. |
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 68999999996421 359999999999999999999999999999999999999999999999999998876653 4
Q ss_pred -hcCeEecccccccc-cchhhhcCCC---CCCC----HHHHHHHHHhCCCCcc
Q 000720 1283 -SRLSIIPQDPMLFQ-GTVRTNLDPL---EQHS----DQEIWEVKISKLLTHK 1326 (1333)
Q Consensus 1283 -s~isiVpQdp~LF~-GTIR~NLdp~---~~~s----DeeI~~aL~~~~L~~~ 1326 (1333)
++++++||+|.+|. .|+++|+... ...+ ++++.++++..+|.+.
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 134 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHR 134 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhh
Confidence 68999999999995 5999999641 1121 3467899999998653
No 498
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.74 E-value=5.2e-18 Score=192.76 Aligned_cols=160 Identities=29% Similarity=0.427 Sum_probs=121.4
Q ss_pred eeCCcEEEEECCCCCChhHHHHHHhCCCcCCCCcEE----------EE-------------CC--eE----EEEcCCCCC
Q 000720 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAI----------KV-------------HG--KK----AYVPQSSWI 670 (1333)
Q Consensus 620 i~~Ge~~~ivG~~GsGKSTLl~~ilG~~~~~~G~~i----------~~-------------~g--~i----ayv~Q~~~i 670 (1333)
.++|+.++|+||||-||||-++.|+|++.|.-|..- .. +| ++ -||.--|-.
T Consensus 97 pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd~iPk~ 176 (591)
T COG1245 97 PRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVDLIPKV 176 (591)
T ss_pred CCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCCCCCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHHHHHHHH
Confidence 578999999999999999999999999999777420 01 11 12 233333556
Q ss_pred CCCCHHHHhccCCcCCHHHHHHHHHHcccchHHHhhcCCCccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCC
Q 000720 671 QTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSA 750 (1333)
Q Consensus 671 ~~~Tv~enI~~g~~~~~~~~~~v~~~~~l~~d~~~~~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDEP~sa 750 (1333)
..++|+|-+.--. ....++++++..+|.+ .+++...+||||+-||++||.|+.+++|+|++|||+|-
T Consensus 177 ~KG~v~elLk~~d--e~g~~devve~l~L~n-----------vl~r~v~~LSGGELQr~aIaa~l~rdADvY~FDEpsSy 243 (591)
T COG1245 177 VKGKVGELLKKVD--ERGKFDEVVERLGLEN-----------VLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSY 243 (591)
T ss_pred hcchHHHHHHhhh--hcCcHHHHHHHhcchh-----------hhhhhhhhcCchHHHHHHHHHHHhccCCEEEEcCCccc
Confidence 6788888764211 1235666777666543 23456789999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhC-CCeEEEecCchhhhhc-CCEEEEEe
Q 000720 751 VDAHTGTHLFKQCLMGLLS-QKTVLYTTHQLEFLDA-ADLVLVMK 793 (1333)
Q Consensus 751 LD~~~~~~l~~~~~~~~~~-~~TvIlvtH~~~~l~~-aD~i~vl~ 793 (1333)
||...+-..- ++++.+.+ +|+||+|.||+..++. +|.|-++-
T Consensus 244 LDi~qRl~~a-r~Irel~~~~k~ViVVEHDLavLD~lsD~vhI~Y 287 (591)
T COG1245 244 LDIRQRLNAA-RVIRELAEDGKYVIVVEHDLAVLDYLSDFVHILY 287 (591)
T ss_pred ccHHHHHHHH-HHHHHHhccCCeEEEEechHHHHHHhhheeEEEe
Confidence 9998765554 45666665 7999999999999987 89887774
No 499
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.74 E-value=5.3e-18 Score=187.68 Aligned_cols=116 Identities=21% Similarity=0.253 Sum_probs=101.8
Q ss_pred EEEEEEEEECCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCCCCh----HHHhhc
Q 000720 1209 ELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGL----QDLRSR 1284 (1333)
Q Consensus 1209 ~f~nVsf~Y~~~~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~i~l----~~LRs~ 1284 (1333)
.+.|+.++|+++ .++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.+.+. ...|+.
T Consensus 2 ~~~~~~~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 80 (218)
T cd03290 2 QVTNGYFSWGSG-LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYS 80 (218)
T ss_pred eeeeeEEecCCC-CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcce
Confidence 567999999766 459999999999999999999999999999999999999999999999999877653 346788
Q ss_pred CeEecccccccccchhhhcCCCCCCCHHHHHHHHHhCCCCc
Q 000720 1285 LSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVKISKLLTH 1325 (1333)
Q Consensus 1285 isiVpQdp~LF~GTIR~NLdp~~~~sDeeI~~aL~~~~L~~ 1325 (1333)
++++||+|.+|+.|+++||.....+++++.+++++.++|.+
T Consensus 81 i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~l~~ 121 (218)
T cd03290 81 VAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQP 121 (218)
T ss_pred EEEEcCCCccccccHHHHHhhcCcCCHHHHHHHHHHhCcHH
Confidence 99999999999999999998655556777888888888753
No 500
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.74 E-value=6.2e-18 Score=182.73 Aligned_cols=118 Identities=21% Similarity=0.274 Sum_probs=101.1
Q ss_pred cEEEEEEEEEECCCCCCccccceEEecCCcEEEEECCCCccHHHHHHHHhcccCCCCCeEEEcCEeCCCCChHHHhhcCe
Q 000720 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLS 1286 (1333)
Q Consensus 1207 ~I~f~nVsf~Y~~~~p~VLk~Is~~I~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvdI~~i~l~~LRs~is 1286 (1333)
.+++++|+.+|.. ..||+||||+|++||.|+||||||||||||++++.|+..|++|+|.+||.++..- ...++
T Consensus 3 ~l~i~~v~~~f~~--~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p-----~~~~~ 75 (248)
T COG1116 3 LLEIEGVSKSFGG--VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGP-----GPDIG 75 (248)
T ss_pred eEEEEeeEEEeCc--eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCC-----CCCEE
Confidence 5899999999975 3599999999999999999999999999999999999999999999999988443 35799
Q ss_pred Eeccccccccc-chhhhcCCC-CC------CCHHHHHHHHHhCCCCcccccCC
Q 000720 1287 IIPQDPMLFQG-TVRTNLDPL-EQ------HSDQEIWEVKISKLLTHKSYQCE 1331 (1333)
Q Consensus 1287 iVpQdp~LF~G-TIR~NLdp~-~~------~sDeeI~~aL~~~~L~~~~~~~~ 1331 (1333)
+|+|++.||.- ||++|+... .. -..+.+.++|+++||.+....-|
T Consensus 76 ~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P 128 (248)
T COG1116 76 YVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYP 128 (248)
T ss_pred EEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCc
Confidence 99999999987 999999632 11 13456899999999987755443
Done!