Query 000720
Match_columns 1333
No_of_seqs 473 out of 4982
Neff 7.4
Searched_HMMs 29240
Date Tue Mar 26 16:25:34 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000720.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_492-496//hhsearch_pdb/000720hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f4c_A Multidrug resistance pr 1.0 1 1 1309.0 98.3 1090 222-1330 2-1203(1321)
2 3g5u_A MCG1178, multidrug resi 1.0 1 1 1041.9 98.1 1045 272-1329 45-1156(1284)
3 4a82_A Cystic fibrosis transme 1.0 1 1 607.7 61.8 542 268-819 7-574 (578)
4 4f4c_A Multidrug resistance pr 1.0 1 1 602.8 54.5 539 274-822 751-1317(1321)
5 3qf4_B Uncharacterized ABC tra 1.0 1 1 601.0 60.5 539 270-822 32-591 (598)
6 3qf4_A ABC transporter, ATP-bi 1.0 1 1 592.6 67.6 543 264-821 12-578 (587)
7 3b60_A Lipid A export ATP-bind 1.0 1 1 572.7 68.1 537 269-821 19-579 (582)
8 3b5x_A Lipid A export ATP-bind 1.0 1 1 571.2 73.4 538 268-821 18-579 (582)
9 2yl4_A ATP-binding cassette SU 1.0 1 1 570.0 67.2 542 269-820 13-582 (595)
10 3g5u_A MCG1178, multidrug resi 1.0 1 1 521.2 56.7 541 274-823 704-1272(1284)
No 1
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=1.00 E-value=1 Score=1309.01 Aligned_cols=1090 Identities=17% Similarity=0.179 Sum_probs=806.6
Q ss_pred HHHHC-CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC-----------C----CCCHHHHHHHHH-HHHH---HHHH
Q ss_conf 98302-4988878999999789489999999999985017-----------9----998789999999-8999---9999
Q 000720 222 FQRGR-IQKLELLHIPPIPQSETANDASSLLEESLRKQKT-----------D----ATSLPQVIIHAV-WKSL---ALNA 281 (1333)
Q Consensus 222 ~~~g~-~~~L~~~Dl~~l~~~~~~~~~~~~f~~~~~~~~~-----------~----~~~l~~al~~~~-~~~~---~~~~ 281 (1333)
++.|. +++|+..|.+++.|+|..+...+.+++.|..+.. + ++.-++.+++.- +.+. +++.
T Consensus 2 ~r~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~Lfrya~~~d~~l~~~g~ 81 (1321)
T 4f4c_A 2 LRNGSLRQSLRTLDSFSLAPEDVLKTAIKTVEDYEGDNIDSNGEIKITRDAKEEVVNKVSIPQLYRYTTTLEKLLLFIGT 81 (1321)
T ss_dssp --CHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTTSTTTBCSSSCBCCSCC---CCSSCCCHHHHTTTCCHHHHHHHHHHH
T ss_pred CCCCHHHCCCCCCCCCCCCCHHHCCCCCCHHHHHCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHCCCHHHHHHHHHHH
T ss_conf 87731006876354456795011100001134542435543343100122320256877999973156767899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCC-------C-C-------CCCCH-------HHHHHHHHHHHHHHHH-HHHHHHHH
Q ss_conf 99999999999999999999987059-------8-8-------77723-------5889999999999999-99999999
Q 000720 282 AFAGVNTIASYIGPFLITNFVSFLSG-------K-H-------DHSSY-------HYGLVLASVFLFAKTV-ESLTQRQW 338 (1333)
Q Consensus 282 ~~~l~~~~~~~~~P~ll~~~i~~~~~-------~-~-------~~~~~-------~~g~~l~~~l~~~~~~-~~l~~~~~ 338 (1333)
+++++..+..-+.++++..+++.+.+ . . ..... ...+.+ +++++..++ ..+....|
T Consensus 82 ~~a~~~G~~~p~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~i~~~~~~~~~~~~~ 160 (1321)
T 4f4c_A 82 LVAVITGAGLPLMSILQGKVSQAFINEQIVINNNGSTFLPTGQNYTKTDFEHDVMNVVWSY-AAMTVGMWAAGQITVTCY 160 (1321)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHTTSCBCSSTTCBCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999999997010001454300034431001689999999999999-999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCC---CCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999997334458---9996799999996499999999-9999999899999999999999844
Q 000720 339 YFGANRIGIRVRSALTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFF-LYIHRIWLLPVQVFLALVILYKNLG 414 (1333)
Q Consensus 339 ~~~~~~~g~rir~~l~~~Iy~K~L~ls~~---~~~~G~I~Nlms~D~~~i~~~~-~~~~~~w~~plqi~ial~~L~~~lG 414 (1333)
.+.+.|+..++| ..+|+|.++++.. .+++|+++|.+++|++++.+++ ..+..++..+++++.++++++.. .
T Consensus 161 ~~~~~r~~~~lR----~~~~~~ll~~~~~~fd~~~~G~l~sr~~~D~~~i~~~~~~~l~~~~~~~~~~i~~~i~~~~~-~ 235 (1321)
T 4f4c_A 161 LYVAEQMNNRLR----REFVKSILRQEISWFDTNHSGTLATKLFDNLERVKEGTGDKIGMAFQYLSQFITGFIVAFTH-S 235 (1321)
T ss_dssp HHHHHHHHHHHH----HHHHHHHTTSCHHHHHHTCCTTHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHHH-C
T ss_pred HHHHHHHHHHHH----HHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
T ss_conf 999999999999----99999997889899879984899999999999999999999999999999999999999999-8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 68899999999999999899999999999999999999999999999566999983429999999999999999999999
Q 000720 415 AAPAFAALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKY 494 (1333)
Q Consensus 415 ~~a~l~gl~~~ii~~~~~~~~~~~~~~~~~~~m~~~D~R~~~~~EiL~~Ik~IK~~~wE~~f~~~I~~~R~~E~~~l~~~ 494 (1333)
|..+++.++++++..++...+++...++.++.++..+++.+.++|.++|||+||+|+||+.+.++..+..++..+...+.
T Consensus 236 ~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 315 (1321)
T 4f4c_A 236 WQLTLVMLAVTPIQALCGFAIAKSMSTFAIRETLRYAKAGKVVEETISSIRTVVSLNGLRYELERYSTAVEEAKKAGVLK 315 (1321)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999999999999999839999982142999999999999999999999
Q ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99999999999998--7999999999998816987777899999999999999999999999999999999999998623
Q 000720 495 LYTCSAIAFLFWAS--PTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKE 572 (1333)
Q Consensus 495 ~~~~a~~~~~~~~~--p~lv~~vtF~~~~~~~~~L~~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~ 572 (1333)
....+......... ..++.+++++.+.+.++.++++.+|+++.++..+..|+..++..+..+.++.+|.+||.+||+.
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~ 395 (1321)
T 4f4c_A 316 GLFLGISFGAMQASNFISFALAFYIGVGWVHDGSLNFGDMLTTFSSVMMGSMALGLAGPQLAVLGTAQGAASGIYEVLDR 395 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999999999999999999999999999995998699999999999999999998999999999999999999999717
Q ss_pred CCCCCC--CCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCC-CEEEECCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 589999--88889889984089832289707865556788633237-767518909999878999946899998489757
Q 000720 573 DNQKKP--ITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR 649 (1333)
Q Consensus 573 ~e~~~~--~~~~~~~~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~v~i~G~~GsGKStLl~~ilge~~~ 649 (1333)
++..+. ....+....+..|+++|++|+|+.. ++.++|+| ||++++|++++|+||+|||||||+++|+|++++
T Consensus 396 ~~~~~~~~~~~~~~~~~~g~I~~~nvsF~Y~~~-----~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~ 470 (1321)
T 4f4c_A 396 KPVIDSSSKAGRKDMKIKGDITVENVHFTYPSR-----PDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDV 470 (1321)
T ss_dssp SCCSSCSSSCCCCCCCCCCCEEEEEEEECCSSS-----TTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCC
T ss_pred CCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCC-----CCCCEEECEEEEECCCCEEEEEECCCCCHHHHHHHHCCCCCC
T ss_conf 853456665565677888767999855407999-----987433331886228827899805898577888875456516
Q ss_pred CCCCEEEECC-------------EEEEECCCCCCCCCCHHHHHCCCCC-CCHHHHHHHHHHCCCCHHHHHHCCCCCCCCC
Q ss_conf 9985799979-------------4799807887888878899603976-7877899999980121378752079964137
Q 000720 650 ISGAAIKVHG-------------KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVG 715 (1333)
Q Consensus 650 ~~G~vi~~~g-------------~iayv~Q~~wi~~~TireNIlfg~~-~~~~~y~~v~~~c~L~~dl~~l~~gd~t~IG 715 (1333)
.+|++ .++| +++||+|+||++++||||||+||++ .+++++.++++.|++++|++.+|+||+|+||
T Consensus 471 ~~G~I-~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vG 549 (1321)
T 4f4c_A 471 LKGKI-TIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVG 549 (1321)
T ss_dssp SEEEE-EETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEES
T ss_pred CCCCC-CCCCCCCHHCCHHHHHHCCCCCCCCCEEECCCHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHCCCCCCCCEEC
T ss_conf 44861-57996501125999850466658753320786167886415522099999999875654688708888860755
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHCCCEEEEEECC
Q ss_conf 88897896899999999998149989998187879799999999999998871998699954760046108989998298
Q 000720 716 ERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDG 795 (1333)
Q Consensus 716 e~g~~LSGGQkqRi~lARAly~~~~i~llDdp~salD~~~~~~i~~~~~~~~l~~ktvilvtH~~~~l~~~d~i~~l~~G 795 (1333)
|+|.+|||||||||+||||+|+||+|++|||||||||+++ ++++++++.++.++||+|+|||+++.++.||+|++|++|
T Consensus 550 e~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~t-e~~i~~~l~~~~~~~T~iiiaHrls~i~~aD~Iivl~~G 628 (1321)
T 4f4c_A 550 DRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAES-EGIVQQALDKAAKGRTTIIIAHRLSTIRNADLIISCKNG 628 (1321)
T ss_dssp SSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTT-HHHHHHHHHHHHTTSEEEEECSCTTTTTTCSEEEEEETT
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHH-HHHHHHHHHHHHCCCEEEEECCCHHHHHHCCEEEEEECC
T ss_conf 8988777778799999998725999899845544688789-999999999984798899973638789868989996399
Q ss_pred EEEECCCHHHHHHHCCHHHHHHHHHHHHCCC-----CCCCCCCCCCCC---CCCCCCCCHHHHHC----CCCCCCCC-CC
Q ss_conf 6988258378884111699999996120036-----799988563356---68767752011100----38777688-88
Q 000720 796 KIEQSGKYEDLIADQNSELVRQMKAHRKSLD-----QVNPPQEDKCLS---RVPCQMSQITEERF----ARPISCGE-FS 862 (1333)
Q Consensus 796 ~i~~~G~~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~---~~~~~~~~~~~~~~----~~~~~~~~-~~ 862 (1333)
+|+++|+|+||++ .++.|.++...+..... ......+..... ..+....+.....+ ........ ..
T Consensus 629 ~ive~Gth~eL~~-~~g~y~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 (1321)
T 4f4c_A 629 QVVEVGDHRALMA-QQGLYYDLVTAQTFTDAVDSAAEGKFSRENSVARQTSEHEGLSRQASEMDDIMNRVRSSTIGSITN 707 (1321)
T ss_dssp EEEEEECHHHHHT-TTCHHHHHHHHHHHHHHHHHHHCC------------------------------------------
T ss_pred EEECCCCHHHHHH-HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCC
T ss_conf 6513689999998-532799999962212222332334433223211122222342222222110221110132124567
Q ss_pred CC-CCCCCCC---------------CCCCHHHHHHHHHHHHCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHCC----CC
Q ss_conf 88-6531101---------------275217999999999600047-999999999999999735888987402----24
Q 000720 863 GR-SQDEDTE---------------LGRVKWTVYSAFITLVYKGAL-VPVILLCQVLFQALQMGSNYWIAWATD----EK 921 (1333)
Q Consensus 863 ~~-~~~e~~~---------------~g~v~~~~y~~y~~~~~~~~~-~~~~ll~~~l~~~~~~~~~~wl~~~~~----~~ 921 (1333)
.+ .+++++. .+..++..++.|.. ..+.+. +.+.+++..+.........+|+..|.+ +.
T Consensus 708 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 786 (1321)
T 4f4c_A 708 GPVIDEKEERIGKDALSRLKQELEENNAQKTNLFEILYH-ARPHALSLFIGMSTATIGGFIYPTYSVFFTSFMNVFAGNP 786 (1321)
T ss_dssp --------CCCCCCHHHHHHHTTTTSCCCCCCHHHHHHH-TGGGHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHTSSCS
T ss_pred CCCHHHHHHHCCCHHHHHHHHHHHHCCCCCEEHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 740257775315403899999999707863109999999-8778999999999999999999999999999998751793
Q ss_pred C--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC--CCCCHHHHHHHCCHHHH
Q ss_conf 6--5661369999999987899999999999999999999999999999985385541044--58112689973569799
Q 000720 922 R--KVSREQLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDS--TPSSRILNRCSTDQSTV 997 (1333)
Q Consensus 922 ~--~~~~~~~~~~y~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~sfFd~--tp~GrIlnR~s~D~~~i 997 (1333)
. .....+|..+|++++++..++.+++.+++...+.+++.++|.+++++++++|++|||+ +|+|+|+||+++|++.+
T Consensus 787 ~~~~~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~~~ffd~~~~~~G~i~~r~s~D~~~i 866 (1321)
T 4f4c_A 787 ADFLSQGHFWALMFLVLAAAQGICSFLMTFFMGIASESLTRDLRNKLFRNVLSQHIGFFDSPQNASGKISTRLATDVPNL 866 (1321)
T ss_dssp STTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCSSSTTSGGGCHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCHHHHHHCCHHHHHHH
T ss_conf 45566789999999999999999999999999999999999999999888734993332167888488885025059999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCHH
Q ss_conf 84889999999999999999999999876689999999999999999999997899999995720628999999760338
Q 000720 998 DTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGAT 1077 (1333)
Q Consensus 998 d~~l~~~l~~~~~~~~~~i~~iiv~~~~~~~l~lv~ip~~~~~~~i~~~y~~~~rel~rl~~~~~spi~~~~~Etl~G~~ 1077 (1333)
|..++..+..++..++.+++.++++++.+|+++++++++++++++...++.+..+...+......++...++.|+++|++
T Consensus 867 ~~~l~~~l~~~~~~~~~~i~~~~~~~~~~~~l~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~ 946 (1321)
T 4f4c_A 867 RTAIDFRFSTVITTLVSMVAGIGLAFFYGWQMALLIIAILPIVAFGQYLRGRRFTGKNVKSASEFADSGKIAIEAIENVR 946 (1321)
T ss_dssp HTTTSHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTSCCSSCSTTTSSHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999998653777702213786899999999888999999999999999999999998889889999996279
Q ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCC--CCCHHHHHHHHHHHHH
Q ss_conf 887315278999999999989989999999999999999999989999999999876-0588--7776799999999999
Q 000720 1078 TIRCFNQENRFLLRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLIILVT-LPRS--AIDPSLAGLAATYGLN 1154 (1333)
Q Consensus 1078 tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~l~~~~~~~~~~~~~~-~~~~--~~~~g~~gl~l~y~l~ 1154 (1333)
+||+|+.|+++.+++.+..+.+.+..+.......+.......+..+....+.+++.. ...+ ..+++.+ +.+.+++.
T Consensus 947 tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~-~~~~~~~~ 1025 (1321)
T 4f4c_A 947 TVQALAREDTFYENFCEKLDIPHKEAIKEAFIQGLSYGCASSVLYLLNTCAYRMGLALIITDPPTMQPMRV-LRVMYAIT 1025 (1321)
T ss_dssp HHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTSSSSCSSCHHHH-HHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH-HHHHHHHH
T ss_conf 88861414889999999999999999999999999999999999999999998757887537654214789-99999998
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCC-CCCCCCCEEEE
Q ss_conf -9999999999999999775499999994269999975457899999999756099998999878999-97422521775
Q 000720 1155 -LNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPTL-PMVLKGITCTF 1232 (1333)
Q Consensus 1155 -l~~~l~~~v~~~~~le~~~~SveRI~~y~~~p~E~~~~~~~~~~~~~wp~~G~Ief~nVsf~Y~~~~-p~VLk~iSl~I 1232 (1333)
....+.++...+.++++.+.+++|+.++++.++|.+ +...+++.||..|+|+|+||+|+|+++. .+||+|+||+|
T Consensus 1026 ~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~---~~~~~~~~~~~~g~I~f~nVsf~Y~~~~~~~VL~~isl~I 1102 (1321)
T 4f4c_A 1026 ISTSTLGFATSYFPEYAKATFAGGIIFGMLRKISKID---SLSLAGEKKKLYGKVIFKNVRFAYPERPEIEILKGLSFSV 1102 (1321)
T ss_dssp TTTSSTTGGGGHHHHHHHHHHHHHHHHHHHHCCCSSC---TTCCCSBCCCCCCCEEEEEEEECCTTSCSSCSEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC---CCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCEEEEE
T ss_conf 7788999999999999999999998999860766577---7667787888888189998798579999882124516998
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCCEEECCCCCCCCCCHHHHCCCC---CCC
Q ss_conf 09949999879996489999888305589997699969718999948885028076565422345425503999---999
Q 000720 1233 PGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPL---EQH 1309 (1333)
Q Consensus 1233 ~~GekVgIVGrTGSGKSTLi~lL~Rl~ep~~G~I~IDGvDI~~i~l~~LRs~isiVpQdp~LF~GTIR~NLdp~---~~~ 1309 (1333)
+||||||||||||||||||+++|+|+|||++|+|+|||+||+++++++||++|++|||||+||+||||+||..+ +++
T Consensus 1103 ~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNI~~gld~~~~ 1182 (1321)
T 4f4c_A 1103 EPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPSSV 1182 (1321)
T ss_dssp CTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSEEHHHHHSSSSCTTTS
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEHHHCCHHHHHHHEEEECCCCEEECCCHHHHHHCCCCCCCC
T ss_conf 89899999899998199999999568638997899999986549999998545998789973272399997454999999
Q ss_pred CHHHHHHHHHHCCCCCCCCCC
Q ss_conf 999999999967998654468
Q 000720 1310 SDQEIWEVKISKLLTHKSYQC 1330 (1333)
Q Consensus 1310 sDeeI~~aL~~~~L~~~~~~~ 1330 (1333)
+|+|||+||++|++++.+.+.
T Consensus 1183 sd~ei~~Al~~a~l~~~I~~L 1203 (1321)
T 4f4c_A 1183 TMAQVEEAARLANIHNFIAEL 1203 (1321)
T ss_dssp CHHHHHHHHHHTTCHHHHHTS
T ss_pred CHHHHHHHHHHHCCHHHHHCC
T ss_conf 999999999982984999717
No 2
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=1.00 E-value=1 Score=1041.89 Aligned_cols=1045 Identities=17% Similarity=0.165 Sum_probs=740.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-------CCC---------CH-HHHHHHHHHHHHHHHHHHHH
Q ss_conf 99899999999999999999999999999998705988-------777---------23-58899999999999999999
Q 000720 272 AVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKH-------DHS---------SY-HYGLVLASVFLFAKTVESLT 334 (1333)
Q Consensus 272 ~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~-------~~~---------~~-~~g~~l~~~l~~~~~~~~l~ 334 (1333)
..|..+++..++.++..++..+.|+++..+++.+.... ... .. .....++..++...++..++
T Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (1284)
T 3g5u_A 45 LDRLYMLVGTLAAIIHGVALPLMMLIFGDMTDSFASVGNVSKNSTNMSEADKRAMFAKLEEEMTTYAYYYTGIGAGVLIV 124 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 79999999999999999999999999999999986134443322222211111002446889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC---CCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999999999997334458---99967999999964999999999-99999989999999999999
Q 000720 335 QRQWYFGANRIGIRVRSALTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILY 410 (1333)
Q Consensus 335 ~~~~~~~~~~~g~rir~~l~~~Iy~K~L~ls~~---~~~~G~I~Nlms~D~~~i~~~~~-~~~~~w~~plqi~ial~~L~ 410 (1333)
.....+...+.+.++-..+...+|+|.++++.. ..++|+++|.++.|++.+.++.. .+..+....+.++.++++++
T Consensus 125 ~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~f~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~ 204 (1284)
T 3g5u_A 125 AYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDVHDVGELNTRLTDDVSKINEGIGDKIGMFFQAMATFFGGFIIGF 204 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999986998997568877899999988999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
Q ss_conf 98446889999999999999989999999999999999999999999999956699998342999999999999999999
Q 000720 411 KNLGAAPAFAALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDS 490 (1333)
Q Consensus 411 ~~lG~~a~l~gl~~~ii~~~~~~~~~~~~~~~~~~~m~~~D~R~~~~~EiL~~Ik~IK~~~wE~~f~~~I~~~R~~E~~~ 490 (1333)
. +.|..+++.++++.++..+...+.+...+..++.++..++..+...|.++||++||.|++|+.+.++..+.-+.-.+.
T Consensus 205 ~-~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ikaf~~e~~~~~~~~~~~~~~~~~ 283 (1284)
T 3g5u_A 205 T-RGWKLTLVILAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELERYNNNLEEAKRL 283 (1284)
T ss_dssp H-TTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHTTCCCCSHHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_conf 9-989999999999999999999999999999999999999999999999978799998465399999999999999999
Q ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999--998799999999999881698777789999999999999999999999999999999999999
Q 000720 491 LKKYLYTCSAIAFLF--WASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQE 568 (1333)
Q Consensus 491 l~~~~~~~a~~~~~~--~~~p~lv~~vtF~~~~~~~~~L~~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~ 568 (1333)
..+.....+...... ......+..++++.+....+.++++.+++++..+.....|+..+...+..+.++..+.+|+.+
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~ 363 (1284)
T 3g5u_A 284 GIKKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIEAFANARGAAYEVFK 363 (1284)
T ss_dssp HHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999299889999999999999999999999999999999999999999
Q ss_pred HHCCCCCCCC--CCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCC-CEEEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 8623589999--88889889984089832289707865556788633237-76751890999987899994689999848
Q 000720 569 FIKEDNQKKP--ITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILG 645 (1333)
Q Consensus 569 fL~~~e~~~~--~~~~~~~~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~v~i~G~~GsGKStLl~~ilg 645 (1333)
+++.+++.+. ....+.......|+++|++|+|+.+ ++.++|+| ||++++|++++|+|++|||||||+++|+|
T Consensus 364 ~l~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~-----~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g 438 (1284)
T 3g5u_A 364 IIDNKPSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSR-----KEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQR 438 (1284)
T ss_dssp TTSCCCCCSSCCSSCCCCTTCCCCEEEEEEEECCSST-----TSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTT
T ss_pred HHCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCC-----CCCCCEECCEEEECCCCEEEEECCCCCCHHHHHHHHHC
T ss_conf 9728986776665677777777718999989976999-----98710125458975998899989999979999999807
Q ss_pred CCCCCCCCEEEECCE-------------EEEECCCCCCCCCCHHHHHCCCCC-CCHHHHHHHHHHCCCCHHHHHHCCCCC
Q ss_conf 975799857999794-------------799807887888878899603976-787789999998012137875207996
Q 000720 646 EIPRISGAAIKVHGK-------------KAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDL 711 (1333)
Q Consensus 646 e~~~~~G~vi~~~g~-------------iayv~Q~~wi~~~TireNIlfg~~-~~~~~y~~v~~~c~L~~dl~~l~~gd~ 711 (1333)
++++.+|++ .++|. ++||+|+||++++||+|||.+|.+ .++++..++++.|++.++++.+|+|++
T Consensus 439 ~~~~~~G~i-~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~ 517 (1284)
T 3g5u_A 439 LYDPLDGMV-SIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFD 517 (1284)
T ss_dssp SSCCSEEEE-EETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHHHHHHHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGG
T ss_pred CCCCCCEEE-EECCEEHHHCCHHHHHHHEEEECCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHCCCCCC
T ss_conf 889997389-9999987757999998654898688753776699997457989999999999998296999974656334
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHCCCEEEE
Q ss_conf 41378889789689999999999814998999818787979999999999999887199869995476004610898999
Q 000720 712 SVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLV 791 (1333)
Q Consensus 712 t~IGe~g~~LSGGQkqRi~lARAly~~~~i~llDdp~salD~~~~~~i~~~~~~~~l~~ktvilvtH~~~~l~~~d~i~~ 791 (1333)
|.+||+|.+||||||||++||||++++|+|++||||||+||+++...+ ++++....+++|+|+|||+++.+..||+|++
T Consensus 518 t~~~~~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i-~~~l~~~~~~~t~i~itH~l~~i~~~d~i~v 596 (1284)
T 3g5u_A 518 TLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVV-QAALDKAREGRTTIVIAHRLSTVRNADVIAG 596 (1284)
T ss_dssp CCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHH-HHHHHHHHTTSEEEEECSCHHHHTTCSEEEE
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHH-HHHHHHHCCCCEEEEEECCHHHHHCCCEEEE
T ss_conf 501478786599999999999999529998999798777799999999-9999997399989999407789974998999
Q ss_pred EECCEEEECCCHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCC---CCCCCCH--H--HHHCCCCC--CCCCCC
Q ss_conf 8298698825837888411169999999612003679998856335668---7677520--1--11003877--768888
Q 000720 792 MKDGKIEQSGKYEDLIADQNSELVRQMKAHRKSLDQVNPPQEDKCLSRV---PCQMSQI--T--EERFARPI--SCGEFS 862 (1333)
Q Consensus 792 l~~G~i~~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~--~--~~~~~~~~--~~~~~~ 862 (1333)
|++|+|++.|+++++++ .+..+.++...+.................+. ....... . ........ ......
T Consensus 597 l~~G~i~~~g~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 675 (1284)
T 3g5u_A 597 FDGGVIVEQGNHDELMR-EKGIYFKLVMTQTAGNEIELGNEACKSKDEIDNLDMSSKDSGSSLIRRRSTRKSICGPHDQD 675 (1284)
T ss_dssp CSSSCCCCEECHHHHHH-TTSHHHHHHHHTC-------------------------------------------------
T ss_pred EECCEEEEECCHHHHHH-CCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 98999999788999986-78779999997430022111333333222223443333333320003454333445642233
Q ss_pred CC-CCCC--CCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH----HHCCCCCC----CCHHHHHH
Q ss_conf 88-6531--10127521799999999960004799999999999999973588898----74022465----66136999
Q 000720 863 GR-SQDE--DTELGRVKWTVYSAFITLVYKGALVPVILLCQVLFQALQMGSNYWIA----WATDEKRK----VSREQLIG 931 (1333)
Q Consensus 863 ~~-~~~e--~~~~g~v~~~~y~~y~~~~~~~~~~~~~ll~~~l~~~~~~~~~~wl~----~~~~~~~~----~~~~~~~~ 931 (1333)
.. ..++ +.......+..++.|.+.. ...++ +.+++.++..+......+++. .+.+..+. .....+..
T Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 753 (1284)
T 3g5u_A 676 RKLSTKEALDEDVPPASFWRILKLNSTE-WPYFV-VGIFCAIINGGLQPAFSVIFSKVVGVFTNGGPPETQRQNSNLFSL 753 (1284)
T ss_dssp --------CCCCCSCCCTTHHHHHHHHT-CCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHH
T ss_pred CCCCHHHHHHCCCCCHHHHHHHHHHCCH-HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 2110245553136625899999984515-79999-999999999999999999999999998556850336779999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC--CCCCCHHHHHHHCCHHHHHHHHHHHHHHHH
Q ss_conf 999998789999999999999999999999999999998538554104--458112689973569799848899999999
Q 000720 932 VFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFD--STPSSRILNRCSTDQSTVDTDIPYRLAGLA 1009 (1333)
Q Consensus 932 ~y~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~sfFd--~tp~GrIlnR~s~D~~~id~~l~~~l~~~~ 1009 (1333)
+|++++++..++.+.+.+++...+.+...++|.+++++++++|++||| .+|+|+++||+++|+..++..++..+..++
T Consensus 754 ~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ff~~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~ 833 (1284)
T 3g5u_A 754 LFLILGIISFITFFLQGFTFGKAGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGATGSRLAVIF 833 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHSCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999999983998887578998899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCHHHHHHCCCHHHHH
Q ss_conf 99999999999999876689999999999999999999997899999995720628999999760338887315278999
Q 000720 1010 FALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQAYYITTARELARMVGTRKAPILHHFSESIAGATTIRCFNQENRFL 1089 (1333)
Q Consensus 1010 ~~~~~~i~~iiv~~~~~~~l~lv~ip~~~~~~~i~~~y~~~~rel~rl~~~~~spi~~~~~Etl~G~~tIRaf~~e~~f~ 1089 (1333)
..++.+++.+++++..+|+++++++.++|+.+.....+.+..+...+......+....++.|++.|+.+||+|+.|+++.
T Consensus 834 ~~~~~~~~~~i~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~ti~a~~~e~~~~ 913 (1284)
T 3g5u_A 834 QNIANLGTGIIISLIYGWQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQKFE 913 (1284)
T ss_dssp HHHHHHHHHHHHHHSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTTTTCSSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
T ss_conf 99999999999999996999999999999999999999999999999999999999999999998899999846599999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999998998999999999999999999998999999999987-60588777679999999999999999999999999
Q 000720 1090 LRSHSLIDDYSCVTFHNCGTMEWLCLRINLLFNFAFFLVLIILV-TLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCN 1168 (1333)
Q Consensus 1090 ~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~l~~~~~~~~~~~~~-~~~~~~~~~g~~gl~l~y~l~l~~~l~~~v~~~~~ 1168 (1333)
+++.+..+...+..........+.......+..+..+.+.+++. ....+.++.+....++.+.......+..+.....+
T Consensus 914 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 993 (1284)
T 3g5u_A 914 TMYAQSLQIPYRNAMKKAHVFGITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFAPD 993 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSSCSCSTTHHHHHHHHHHHHHHHHHHTSSSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999999999999999909806999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCC-CCCCCCCCEEEECCCCEEEEECCCCCC
Q ss_conf 9977549999999426999997545789999999975609999899987899-997422521775099499998799964
Q 000720 1169 VENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPT-LPMVLKGITCTFPGEKKIGVVGRTGSG 1247 (1333)
Q Consensus 1169 le~~~~SveRI~~y~~~p~E~~~~~~~~~~~~~wp~~G~Ief~nVsf~Y~~~-~p~VLk~iSl~I~~GekVgIVGrTGSG 1247 (1333)
+.....+++|+.++++.++|.+...+ .+.+.++..|.|+|+||+|+|+.. ..++|+|+||+|++||++||||+||||
T Consensus 994 ~~~~~~a~~ri~~~l~~~~~~~~~~~--~~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsG 1071 (1284)
T 3g5u_A 994 YAKATVSASHIIRIIEKTPEIDSYST--QGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCG 1071 (1284)
T ss_dssp STHHHHHHHHHHHHHHSCCSSSSCCS--SCCCTTTTSCCEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTT
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCC--CCCCCCCCCCCEEEEEEEEECCCCCCCEEECCEEEEECCCCEEEEECCCCCC
T ss_conf 99999999999999838876666555--6654567778579999899779999870020305997699889998899997
Q ss_pred HHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCCEEECCCCCCCCCCHHHHCCCC---CCCCHHHHHHHHHHCCCC
Q ss_conf 89999888305589997699969718999948885028076565422345425503999---999999999999967998
Q 000720 1248 KSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPL---EQHSDQEIWEVKISKLLT 1324 (1333)
Q Consensus 1248 KSTLi~lL~Rl~ep~~G~I~IDGvDI~~i~l~~LRs~isiVpQdp~LF~GTIR~NLdp~---~~~sDeeI~~aL~~~~L~ 1324 (1333)
||||+++|+|+++|++|+|.+||+|+++++++++|+++++|||||.+|++|||+||.++ ...+|+++|++++++++.
T Consensus 1072 KSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~ 1151 (1284)
T 3g5u_A 1072 KSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIH 1151 (1284)
T ss_dssp HHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTSCEEEESSCCCCSSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCEEEECCCCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHCCH
T ss_conf 89999999468678997798999980007899997026898778740666699997466877899999999999983959
Q ss_pred CCCCC
Q ss_conf 65446
Q 000720 1325 HKSYQ 1329 (1333)
Q Consensus 1325 ~~~~~ 1329 (1333)
+...+
T Consensus 1152 ~~i~~ 1156 (1284)
T 3g5u_A 1152 QFIDS 1156 (1284)
T ss_dssp HHHSS
T ss_pred HHHHH
T ss_conf 99972
No 3
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=1.00 E-value=1 Score=607.71 Aligned_cols=542 Identities=21% Similarity=0.271 Sum_probs=443.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999899999999999999999999999999998705988777235----8899999999999999999999999999
Q 000720 268 VIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYH----YGLVLASVFLFAKTVESLTQRQWYFGAN 343 (1333)
Q Consensus 268 al~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~~----~g~~l~~~l~~~~~~~~l~~~~~~~~~~ 343 (1333)
.+++.+++.++...++.++..++..+.|+++..+++.+.......... ..+.++.++++..++..++.....+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (578)
T 4a82_A 7 QFVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFIRQYLAQ 86 (578)
T ss_dssp HHHGGGHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99889999999999999999999999999999999999816871146778888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCC---CCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999997334458---99967999999964999999999-99999989999999999999984468899
Q 000720 344 RIGIRVRSALTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGAAPAF 419 (1333)
Q Consensus 344 ~~g~rir~~l~~~Iy~K~L~ls~~---~~~~G~I~Nlms~D~~~i~~~~~-~~~~~w~~plqi~ial~~L~~~lG~~a~l 419 (1333)
+.+.++...+...+|+|.++++.. ..++|+++|.+++|++++.++.. .++.+|..++.+++++++++..-. +.++
T Consensus 87 ~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~-~l~l 165 (578)
T 4a82_A 87 WTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDV-KLTL 165 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCHHHHHTSCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHHCT-TTHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
T ss_conf 999999999999999999878999976898699999999999999999999999999999999999999999969-9999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999989999999999999999999999999999956699998342999999999999999999999999999
Q 000720 420 AALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCS 499 (1333)
Q Consensus 420 ~gl~~~ii~~~~~~~~~~~~~~~~~~~m~~~D~R~~~~~EiL~~Ik~IK~~~wE~~f~~~I~~~R~~E~~~l~~~~~~~a 499 (1333)
..++++++..++...+.++..+.+++.++..+++.+.+.|.++|||+||+|+||+.+.++..+.++...+...+.....+
T Consensus 166 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (578)
T 4a82_A 166 AALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNA 245 (578)
T ss_dssp HHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999999999824999998166499999999999999999999999999
Q ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-
Q ss_conf 9999999987--9999999999988169877778999999999999999999999999999999999999986235899-
Q 000720 500 AIAFLFWASP--TLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQK- 576 (1333)
Q Consensus 500 ~~~~~~~~~p--~lv~~vtF~~~~~~~~~L~~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~- 576 (1333)
.......... ..+.+++++.+....+.++++.+++.+.++..+..|+..++..+..+.++.+|.+|+.++++.+++.
T Consensus 246 ~~~~~~~~~~~~~~~~v~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~ 325 (578)
T 4a82_A 246 YSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDEDYDIK 325 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 99999999999999999999999998599589999999999999999999999999999999999999999976897666
Q ss_pred CCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCC-CEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEE
Q ss_conf 9988889889984089832289707865556788633237-767518909999878999946899998489757998579
Q 000720 577 KPITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAI 655 (1333)
Q Consensus 577 ~~~~~~~~~~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~v~i~G~~GsGKStLl~~ilge~~~~~G~vi 655 (1333)
+.....+.......|+++|++|+|+.+ ..+.|+| ||++++|++++|+||||||||||+++|+|+++|.+|++
T Consensus 326 ~~~~~~~~~~~~~~i~~~~v~~~y~~~------~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i- 398 (578)
T 4a82_A 326 NGVGAQPIEIKQGRIDIDHVSFQYNDN------EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQI- 398 (578)
T ss_dssp CCTTCCCCCCCSCCEEEEEEEECSCSS------SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEE-
T ss_pred CCCCCCCCCCCCCEEEEEEEEEECCCC------CCCCEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEE-
T ss_conf 787766667778807999999975899------9741343379987999999989999859999999846788999679-
Q ss_pred EECC-------------EEEEECCCCCCCCCCHHHHHCCCCC-CCHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 9979-------------4799807887888878899603976-7877899999980121378752079964137888978
Q 000720 656 KVHG-------------KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINL 721 (1333)
Q Consensus 656 ~~~g-------------~iayv~Q~~wi~~~TireNIlfg~~-~~~~~y~~v~~~c~L~~dl~~l~~gd~t~IGe~g~~L 721 (1333)
.++| +++||+|+||++++|++|||.+|.+ .++++..++++.+.+.++++.+|+|++|.+|++|.+|
T Consensus 399 ~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~L 478 (578)
T 4a82_A 399 LIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKL 478 (578)
T ss_dssp EETTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTS
T ss_pred EECCEEHHHCCHHHHHHHEEEEECCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHCCCHHHHHHCCCCCCC
T ss_conf 99999844278999960068992898347645999985279998899999999880959999757330102530688967
Q ss_pred CHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHCCCEEEEEECCEEEECC
Q ss_conf 96899999999998149989998187879799999999999998871998699954760046108989998298698825
Q 000720 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSG 801 (1333)
Q Consensus 722 SGGQkqRi~lARAly~~~~i~llDdp~salD~~~~~~i~~~~~~~~l~~ktvilvtH~~~~l~~~d~i~~l~~G~i~~~G 801 (1333)
|||||||++||||++++|++++||||||+||++++..+ .+++....+++|+|++||+++.+..||+|++|++|++++.|
T Consensus 479 SgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i-~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g 557 (578)
T 4a82_A 479 SGGQKQRLSIARIFLNNPPILILDEATSALDLESESII-QEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETG 557 (578)
T ss_dssp CHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHH-HHHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEE
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHH-HHHHHHHCCCCEEEEEECCHHHHHCCCEEEEEECCEEEEEC
T ss_conf 99999999999999749999999786545799999999-99999980899799983178999719989999899899988
Q ss_pred CHHHHHHHCCHHHHHHHH
Q ss_conf 837888411169999999
Q 000720 802 KYEDLIADQNSELVRQMK 819 (1333)
Q Consensus 802 ~~~~l~~~~~~~~~~~~~ 819 (1333)
+++|+++ .+..+.++..
T Consensus 558 ~~~el~~-~~~~~~~~~~ 574 (578)
T 4a82_A 558 THRELIA-KQGAYEHLYS 574 (578)
T ss_dssp CHHHHHH-TTSHHHHHHT
T ss_pred CHHHHHH-CCCHHHHHHH
T ss_conf 8999985-8838999998
No 4
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=1.00 E-value=1 Score=602.75 Aligned_cols=539 Identities=17% Similarity=0.211 Sum_probs=391.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 89999999999999999999999999999870598877723588999999999999999999999999999999999999
Q 000720 274 WKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSAL 353 (1333)
Q Consensus 274 ~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~~g~rir~~l 353 (1333)
|..+++..+...+........++++..+++...+........ +..++..+++..++..++.....+...+.+.++...+
T Consensus 751 ~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~l 829 (1321)
T 4f4c_A 751 ALSLFIGMSTATIGGFIYPTYSVFFTSFMNVFAGNPADFLSQ-GHFWALMFLVLAAAQGICSFLMTFFMGIASESLTRDL 829 (1321)
T ss_dssp HHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHTSSCSSTTTTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999999999999998751793455667-8999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCCC--CC---CCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999733445--89---996799999996499999999-99999998999999999999998446889999999999
Q 000720 354 TVLIYKRSMAIKF--AG---PSSGIIINMINVDVERIGDFF-LYIHRIWLLPVQVFLALVILYKNLGAAPAFAALFSTIF 427 (1333)
Q Consensus 354 ~~~Iy~K~L~ls~--~~---~~~G~I~Nlms~D~~~i~~~~-~~~~~~w~~plqi~ial~~L~~~lG~~a~l~gl~~~ii 427 (1333)
...+|+|.++.+. .. .++|+++|.++.|++.+.+.. ..+..+....+.++.++.+++.. .|..++..++++.+
T Consensus 830 r~~l~~~il~~~~~ffd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~~~~~~~~-~~~l~lv~l~~~~~ 908 (1321)
T 4f4c_A 830 RNKLFRNVLSQHIGFFDSPQNASGKISTRLATDVPNLRTAIDFRFSTVITTLVSMVAGIGLAFFY-GWQMALLIIAILPI 908 (1321)
T ss_dssp HHHHHHHHHTSCSSSTTSGGGCHHHHHHHHHTHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEHHH-HHHHHHHHHHHHHH
T ss_conf 99998887349933321678884888850250599999999999999999865377770221378-68999999998889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99998999999999999999999999999999995669999834299999999999999999999999999999999999
Q 000720 428 VMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIAFLFWA 507 (1333)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~m~~~D~R~~~~~EiL~~Ik~IK~~~wE~~f~~~I~~~R~~E~~~l~~~~~~~a~~~~~~~~ 507 (1333)
+........+...+.+.+..+...+......|.++|+++||.|++|+.|.++..+.-+...+...+.....+........
T Consensus 909 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 988 (1321)
T 4f4c_A 909 VAFGQYLRGRRFTGKNVKSASEFADSGKIAIEAIENVRTVQALAREDTFYENFCEKLDIPHKEAIKEAFIQGLSYGCASS 988 (1321)
T ss_dssp HHHHHHHHTSCCSSCSTTTSSHHHHHHHHHHHHHHTHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999998889889999996279888614148899999999999999999999999999999999
Q ss_pred HHHH--HHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-CCC
Q ss_conf 8799--99999999988169--877778999999999999999999999999999999999999986235899998-888
Q 000720 508 SPTL--VSVITFGVCILLKT--PLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPI-TEP 582 (1333)
Q Consensus 508 ~p~l--v~~vtF~~~~~~~~--~L~~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~-~~~ 582 (1333)
...+ +.++.++.+....+ .+.+..++..+..+.....|+..+......+.++..+.+|+.++++.+++.+.. ...
T Consensus 989 ~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~ 1068 (1321)
T 4f4c_A 989 VLYLLNTCAYRMGLALIITDPPTMQPMRVLRVMYAITISTSTLGFATSYFPEYAKATFAGGIIFGMLRKISKIDSLSLAG 1068 (1321)
T ss_dssp HHHHHHHHHHHHHHHTTSSSSCSSCHHHHHHHHHHHHTTTSSTTGGGGHHHHHHHHHHHHHHHHHHHHCCCSSCTTCCCS
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 99999999998757887537654214789999999987788999999999999999999998999860766577766778
Q ss_pred CCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCC-CEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEECC--
Q ss_conf 9889984089832289707865556788633237-7675189099998789999468999984897579985799979--
Q 000720 583 TSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-- 659 (1333)
Q Consensus 583 ~~~~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~v~i~G~~GsGKStLl~~ilge~~~~~G~vi~~~g-- 659 (1333)
+..+..+.|+++|++|+|+++ ++.++|+| ||+|++|+++||||++|||||||+++|+|.++|.+|+| .++|
T Consensus 1069 ~~~~~~g~I~f~nVsf~Y~~~-----~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I-~iDG~d 1142 (1321)
T 4f4c_A 1069 EKKKLYGKVIFKNVRFAYPER-----PEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEI-FIDGSE 1142 (1321)
T ss_dssp BCCCCCCCEEEEEEEECCTTS-----CSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEE-EETTEE
T ss_pred CCCCCCCEEEEEEEEEECCCC-----CCCCCCCCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEE-EECCEE
T ss_conf 788888818999879857999-----98821245169988989999989999819999999956863899789-999998
Q ss_pred -----------EEEEECCCCCCCCCCHHHHHCCCC---CCCHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCHHH
Q ss_conf -----------479980788788887889960397---678778999999801213787520799641378889789689
Q 000720 660 -----------KKAYVPQSSWIQTGTIRENILFGK---DMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (1333)
Q Consensus 660 -----------~iayv~Q~~wi~~~TireNIlfg~---~~~~~~y~~v~~~c~L~~dl~~l~~gd~t~IGe~g~~LSGGQ 725 (1333)
+++||||+|++|+|||||||.+|. ..+++...++++.+.+.+.++.+|+|.+|.|||+|.+|||||
T Consensus 1143 i~~i~~~~lR~~i~~V~Qdp~LF~gTIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQ 1222 (1321)
T 4f4c_A 1143 IKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQ 1222 (1321)
T ss_dssp TTTBCHHHHHTTEEEECSSCCCCSEEHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHH
T ss_pred HHHCCHHHHHHHEEEECCCCEEECCCHHHHHHCCCCCCCCCHHHHHHHHHHHCCHHHHHCCCCCCCCEECCCCCCCCHHH
T ss_conf 65499999985459987899732723999974549999999999999999829849997176789998238891569999
Q ss_pred HHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHCCCEEEEEECCEEEECCCHHH
Q ss_conf 99999999981499899981878797999999999999988719986999547600461089899982986988258378
Q 000720 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYED 805 (1333)
Q Consensus 726 kqRi~lARAly~~~~i~llDdp~salD~~~~~~i~~~~~~~~l~~ktvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~ 805 (1333)
||||+||||++++|+|++||||||+||+++.+.+ ++.+....+++|+|+|+|+++.+..||+|+||++|+|+|.|+|+|
T Consensus 1223 rQriaiARAllr~~~ILiLDEaTSaLD~~tE~~I-q~~l~~~~~~~TvI~IAHRLsTi~~aD~I~Vld~G~IvE~Gth~e 1301 (1321)
T 4f4c_A 1223 KQRIAIARALVRNPKILLLDEATSALDTESEKVV-QEALDRAREGRTCIVIAHRLNTVMNADCIAVVSNGTIIEKGTHTQ 1301 (1321)
T ss_dssp HHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHH-HHHHTTTSSSSEEEEECSSSSTTTTCSEEEEESSSSEEEEECHHH
T ss_pred HHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHH-HHHHHHHCCCCEEEEECCCHHHHHHCCEEEEEECCEEEEECCHHH
T ss_conf 9999999999717998999681115789999999-999999739998999606899999699999998989999888899
Q ss_pred HHHHCCHHHHHHHHHHH
Q ss_conf 88411169999999612
Q 000720 806 LIADQNSELVRQMKAHR 822 (1333)
Q Consensus 806 l~~~~~~~~~~~~~~~~ 822 (1333)
|++ .++.|.++++.+.
T Consensus 1302 Ll~-~~g~y~~L~~~Q~ 1317 (1321)
T 4f4c_A 1302 LMS-EKGAYYKLTQKQM 1317 (1321)
T ss_dssp HHH-CC-----------
T ss_pred HHH-CCCHHHHHHHHHH
T ss_conf 984-9809999999998
No 5
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=1.00 E-value=1 Score=600.95 Aligned_cols=539 Identities=20% Similarity=0.250 Sum_probs=442.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99998999999999999999999999999999987059887772358899999999999999999999999999999999
Q 000720 270 IHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRV 349 (1333)
Q Consensus 270 ~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~~g~ri 349 (1333)
++.+++.++...++.++..++..+.|+++..+++.+...... . . ...++..+++..++..++.....+...+.+.++
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~-~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (598)
T 3qf4_B 32 LRPHTFTLIMVFVFVTVSSILGVLSPYLIGKTIDVVFVPRRF-D-L-LPRYMLILGTIYALTSLLFWLQGKIMLTLSQDV 108 (598)
T ss_dssp TGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCG-G-G-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH-H-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999999999999999999999736888-9-9-999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCC---CCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999973344589---9967999999964999999999-99999989999999999999984468899999999
Q 000720 350 RSALTVLIYKRSMAIKFAG---PSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGAAPAFAALFST 425 (1333)
Q Consensus 350 r~~l~~~Iy~K~L~ls~~~---~~~G~I~Nlms~D~~~i~~~~~-~~~~~w~~plqi~ial~~L~~~lG~~a~l~gl~~~ 425 (1333)
...+...+|+|.++++... .++|+++|.+++|++++.++.. .++.++..++.++.++++++..-. +.+++.++++
T Consensus 109 ~~~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~-~l~l~~l~~~ 187 (598)
T 3qf4_B 109 VFRLRKELFEKLQRVPVGFFDRTPHGDIISRVINDVDNINNVLGNSIIQFFSGIVTLAGAVIMMFRVNV-ILSLVTLSIV 187 (598)
T ss_dssp HHHHHHHHHHHHHHSCTHHHHHSCHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHCH-HHHHHHTTHH
T ss_pred HHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
T ss_conf 999999999999779999976888899999999999999999999999999999999999999999989-9999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999989999999999999999999999999999956699998342999999999999999999999999999999999
Q 000720 426 IFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIAFLF 505 (1333)
Q Consensus 426 ii~~~~~~~~~~~~~~~~~~~m~~~D~R~~~~~EiL~~Ik~IK~~~wE~~f~~~I~~~R~~E~~~l~~~~~~~a~~~~~~ 505 (1333)
++..++...+.+...+.+.+..+..+++.+.+.|.++||++||.|+||+.+.++..+.++...+...+.....+......
T Consensus 188 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (598)
T 3qf4_B 188 PLTVLITQIVSSQTRKYFYENQRVLGQLNGIIEEDISGLTVIKLFTREEKEMEKFDRVNESLRKVGTKAQIFSGVLPPLM 267 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999737999997487099999999999999999999999999999999
Q ss_pred HHH--HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 998--799999999999881698777789999999999999999999999999999999999999862358999988889
Q 000720 506 WAS--PTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPITEPT 583 (1333)
Q Consensus 506 ~~~--p~lv~~vtF~~~~~~~~~L~~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~~~~~ 583 (1333)
... -..+.+++++.+....+.++++.+++.+.+...+..|+..++..+..+.++.+|.+|+.++++.+++.+.....+
T Consensus 268 ~~~~~~~~~~~~~~g~~l~~~g~ls~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~ 347 (598)
T 3qf4_B 268 NMVNNLGFALISGFGGWLALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILDLEEEKDDPDAVE 347 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGTSSCHHHHHHHHTTTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCCSSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 99999999999999999998599789999999999999999999999999999999999999999976887777777777
Q ss_pred CCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCC-CEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEECC---
Q ss_conf 889984089832289707865556788633237-7675189099998789999468999984897579985799979---
Q 000720 584 SKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--- 659 (1333)
Q Consensus 584 ~~~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~v~i~G~~GsGKStLl~~ilge~~~~~G~vi~~~g--- 659 (1333)
.......|+++|++|+|+.+ .+.|+| ||++++|++++|+||||||||||+++|+|+++|.+|++ .++|
T Consensus 348 ~~~~~~~i~~~~v~~~y~~~-------~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i-~~~g~~i 419 (598)
T 3qf4_B 348 LREVRGEIEFKNVWFSYDKK-------KPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQI-LVDGIDI 419 (598)
T ss_dssp CCSCCCCEEEEEEECCSSSS-------SCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEE-EETTEEG
T ss_pred CCCCCCEEEEEEEEEECCCC-------CCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEE-EECCEEH
T ss_conf 77777718999989977999-------860122279986998899989999969999999945857998089-9999983
Q ss_pred ----------EEEEECCCCCCCCCCHHHHHCCCCC-CCHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf ----------4799807887888878899603976-78778999999801213787520799641378889789689999
Q 000720 660 ----------KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQR 728 (1333)
Q Consensus 660 ----------~iayv~Q~~wi~~~TireNIlfg~~-~~~~~y~~v~~~c~L~~dl~~l~~gd~t~IGe~g~~LSGGQkqR 728 (1333)
+++||+|+|+++++|++|||.+|.+ .++++..++++.+.+.++++.+|+|++|.+||+|.+||||||||
T Consensus 420 ~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qr 499 (598)
T 3qf4_B 420 RKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQL 499 (598)
T ss_dssp GGSCHHHHHHHEEEECTTCCCCSSBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHH
T ss_pred HHCCHHHHHHCEEEEECCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHCCCCCCCHHCCCCCCCCHHHHHH
T ss_conf 01889999841089907982324639999744799999999999999969788897464532364227889879999999
Q ss_pred HHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHCCCEEEEEECCEEEECCCHHHHHH
Q ss_conf 99999981499899981878797999999999999988719986999547600461089899982986988258378884
Q 000720 729 IQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIA 808 (1333)
Q Consensus 729 i~lARAly~~~~i~llDdp~salD~~~~~~i~~~~~~~~l~~ktvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~ 808 (1333)
++||||++++|++++||||||+||++++..+.+ ++....+++|+|+|||+++.+..||+|++|++|++++.|+++|+++
T Consensus 500 v~iAral~~~p~illlDEpts~LD~~~~~~i~~-~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 578 (598)
T 3qf4_B 500 LAITRAFLANPKILILDEATSNVDTKTEKSIQA-AMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDELIQ 578 (598)
T ss_dssp HHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHH-HHHHHHTTSEEEEESCCTTHHHHCSEEEEECSSSEEECSCHHHHHH
T ss_pred HHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHH-HHHHHCCCCEEEEEECCHHHHHCCCEEEEEECCEEEEECCHHHHHH
T ss_conf 999999964999999989766799999999999-9999808998999942778997199899998999998778999986
Q ss_pred HCCHHHHHHHHHHH
Q ss_conf 11169999999612
Q 000720 809 DQNSELVRQMKAHR 822 (1333)
Q Consensus 809 ~~~~~~~~~~~~~~ 822 (1333)
.+..+.++...+.
T Consensus 579 -~~~~~~~~~~~~~ 591 (598)
T 3qf4_B 579 -KRGFYYELFTSQY 591 (598)
T ss_dssp -TTCHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHH
T ss_conf -7877999999976
No 6
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=1.00 E-value=1 Score=592.57 Aligned_cols=543 Identities=19% Similarity=0.252 Sum_probs=427.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 87899999998999999999999999999999999999987059887772358899999999999999999999999999
Q 000720 264 SLPQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGAN 343 (1333)
Q Consensus 264 ~l~~al~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~ 343 (1333)
+.++.+++.+|+.+++..++.++..++..+.|+++..+++....... ... .+.++..+++..++..+......+...
T Consensus 12 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (587)
T 3qf4_A 12 KTLARYLKPYWIFAVLAPLFMVVEVICDLSQPTLLARIVDEGIARGD--FSL-VLKTGILMLIVALIGAVGGIGCTVFAS 88 (587)
T ss_dssp CCGGGGTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTC--HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999999999873698--799-999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCC---CCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999973344589---99679999999649999999999-9999989999999999999984468899
Q 000720 344 RIGIRVRSALTVLIYKRSMAIKFAG---PSSGIIINMINVDVERIGDFFLY-IHRIWLLPVQVFLALVILYKNLGAAPAF 419 (1333)
Q Consensus 344 ~~g~rir~~l~~~Iy~K~L~ls~~~---~~~G~I~Nlms~D~~~i~~~~~~-~~~~w~~plqi~ial~~L~~~lG~~a~l 419 (1333)
+.+.++...+...+|+|.++++... .++|+++|.+++|++++.++... +..++..++.++.++++++..-. ..++
T Consensus 89 ~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~-~l~l 167 (587)
T 3qf4_A 89 YASQNFGADLRRDLFRKVLSFSISNVNRFHTSSLITRLTNDVTQLQNLVMMLLRIVVRAPLLFVGGIVMAVSINV-KLSS 167 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCT-TTTH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
T ss_conf 999999999999999999788979976588899999999999999999999999999999999999999999989-9999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH----HHHHHHHHHHHHHH
Q ss_conf 99999999999989999999999999999999999999999956699998342999999999----99999999999999
Q 000720 420 AALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLL----RLREIERDSLKKYL 495 (1333)
Q Consensus 420 ~gl~~~ii~~~~~~~~~~~~~~~~~~~m~~~D~R~~~~~EiL~~Ik~IK~~~wE~~f~~~I~----~~R~~E~~~l~~~~ 495 (1333)
..++++++..++...+.++..+..++.++..+++.+.+.|.++||++||.|+||+.+.++.. +.|+.+.+..+...
T Consensus 168 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (587)
T 3qf4_A 168 VLIFLIPPIVLLFVWLTKKGNPLFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKANESLRRSIISAFSLIV 247 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999999999855999998621499999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 99999999999987999999999998816987777899999999999999999999999999999999999998623589
Q 000720 496 YTCSAIAFLFWASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQ 575 (1333)
Q Consensus 496 ~~~a~~~~~~~~~p~lv~~vtF~~~~~~~~~L~~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~ 575 (1333)
...... .+......+.+++++.+....+.++.+.+++.+.++..+..|+..++..+..+.++.+|.+|+.++++.++.
T Consensus 248 ~~~~~~--~~~~~~~~~~vl~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~ 325 (587)
T 3qf4_A 248 FALPLF--IFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRASASAKRVLEVLNEKPA 325 (587)
T ss_dssp HHHHHH--HHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCS
T ss_pred HHHHHH--HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 999999--999999999999999999984993899999999999999999999999999999999999999999768976
Q ss_pred -CCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCC-CEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCC
Q ss_conf -99988889889984089832289707865556788633237-7675189099998789999468999984897579985
Q 000720 576 -KKPITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGA 653 (1333)
Q Consensus 576 -~~~~~~~~~~~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~v~i~G~~GsGKStLl~~ilge~~~~~G~ 653 (1333)
++.....+....+..|+++|++|+|+.+ ..+.|+| ||++++|++++|+||||||||||+++|+|++++.+|+
T Consensus 326 ~~~~~~~~~~~~~~~~i~~~~v~~~y~~~------~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~ 399 (587)
T 3qf4_A 326 IEEADNALALPNVEGSVSFENVEFRYFEN------TDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGR 399 (587)
T ss_dssp CCCCTTCBCCSCCCCCEEEEEEEECSSSS------SCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEE
T ss_pred CCCCCCCCCCCCCCCCEEEEEEEEECCCC------CCCCEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCE
T ss_conf 57887765668888807997889984899------976421117998699889998999997999999992786699867
Q ss_pred EEEECC-------------EEEEECCCCCCCCCCHHHHHCCCCC-CCHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCC
Q ss_conf 799979-------------4799807887888878899603976-78778999999801213787520799641378889
Q 000720 654 AIKVHG-------------KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGI 719 (1333)
Q Consensus 654 vi~~~g-------------~iayv~Q~~wi~~~TireNIlfg~~-~~~~~y~~v~~~c~L~~dl~~l~~gd~t~IGe~g~ 719 (1333)
+ .++| +++||+|+|+++++|++|||.+|.+ .++++..++++.+.+.++++.+|+|++|.+|++|.
T Consensus 400 i-~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~ 478 (587)
T 3qf4_A 400 V-EVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGR 478 (587)
T ss_dssp E-EESSSBGGGBCHHHHHHHEEEECSSCCCCSEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSC
T ss_pred E-EECCEECCCCCHHHHHHHEEEECCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHCCCCHHHHHCCCCC
T ss_conf 9-899998340789999841389778986767559999852488999999999999968499997565312127518989
Q ss_pred CCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHCCCEEEEEECCEEEE
Q ss_conf 78968999999999981499899981878797999999999999988719986999547600461089899982986988
Q 000720 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQ 799 (1333)
Q Consensus 720 ~LSGGQkqRi~lARAly~~~~i~llDdp~salD~~~~~~i~~~~~~~~l~~ktvilvtH~~~~l~~~d~i~~l~~G~i~~ 799 (1333)
+||||||||++||||++++|++++||||||+||++++..+.+ .+....+++|+|+|||+++.+..||+|++|++|+|++
T Consensus 479 ~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~-~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~i~~ 557 (587)
T 3qf4_A 479 NFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILD-GLKRYTKGCTTFIITQKIPTALLADKILVLHEGKVAG 557 (587)
T ss_dssp SSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHH-HHHHHSTTCEEEEEESCHHHHTTSSEEEEEETTEEEE
T ss_pred CCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHH-HHHHHCCCCEEEEEECCHHHHHHCCEEEEEECCEEEE
T ss_conf 929999999999999972999999979754479999999999-9998679998999822768898199899998998999
Q ss_pred CCCHHHHHHHCCHHHHHHHHHH
Q ss_conf 2583788841116999999961
Q 000720 800 SGKYEDLIADQNSELVRQMKAH 821 (1333)
Q Consensus 800 ~G~~~~l~~~~~~~~~~~~~~~ 821 (1333)
.|+++|+++ .+..+.++...+
T Consensus 558 ~g~~~el~~-~~~~~~~~~~~~ 578 (587)
T 3qf4_A 558 FGTHKELLE-HCKPYREIYESQ 578 (587)
T ss_dssp EECHHHHHH-HCHHHHHHHHHH
T ss_pred ECCHHHHHH-CCCHHHHHHHHH
T ss_conf 788999986-783999999998
No 7
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=1.00 E-value=1 Score=572.69 Aligned_cols=537 Identities=18% Similarity=0.227 Sum_probs=434.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999899999999999999999999999999998705988777235889999999999999999999999999999999
Q 000720 269 IIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIR 348 (1333)
Q Consensus 269 l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~~g~r 348 (1333)
..+.+++.++...++.++..++..+.|+++..+++.+..... . ...+.++.++++..++..++.....+...+.+.+
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (582)
T 3b60_A 19 TIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTD--R-SVLLWMPLVVIGLMILRGITSYISSYCISWVSGK 95 (582)
T ss_dssp HHGGGHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTSTT--H-HHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999999999999999999998843686--5-7999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHCCCCCC---CCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999973344589---996799999996499999999-99999998999999999999998446889999999
Q 000720 349 VRSALTVLIYKRSMAIKFAG---PSSGIIINMINVDVERIGDFF-LYIHRIWLLPVQVFLALVILYKNLGAAPAFAALFS 424 (1333)
Q Consensus 349 ir~~l~~~Iy~K~L~ls~~~---~~~G~I~Nlms~D~~~i~~~~-~~~~~~w~~plqi~ial~~L~~~lG~~a~l~gl~~ 424 (1333)
+...+...+|+|.++++... .++|+++|.++.|++.+.++. ..+..++..++.+++++++++. +.|+.+++.+++
T Consensus 96 ~~~~lr~~l~~~l~~~~~~~~~~~~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~-~~~~l~li~l~~ 174 (582)
T 3b60_A 96 VVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFY-YSWQLSIILVVL 174 (582)
T ss_dssp HHHHHHHHHHHHHHTCCSTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_conf 9999999999999809999978898658999999879999999999999999999999999999999-809999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999998999999999999999999999999999995669999834299999999----99999999999999999999
Q 000720 425 TIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKL----LRLREIERDSLKKYLYTCSA 500 (1333)
Q Consensus 425 ~ii~~~~~~~~~~~~~~~~~~~m~~~D~R~~~~~EiL~~Ik~IK~~~wE~~f~~~I----~~~R~~E~~~l~~~~~~~a~ 500 (1333)
+++..++...+.+...+..++.++..+++.+.+.|.++|+++||.|++|+.+.++. .+.++.+.+..+........
T Consensus 175 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (582)
T 3b60_A 175 APIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDPI 254 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999996199999837689999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 99999998799999999999881698777789999999999999999999999999999999999999862358999988
Q 000720 501 IAFLFWASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPIT 580 (1333)
Q Consensus 501 ~~~~~~~~p~lv~~vtF~~~~~~~~~L~~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~~ 580 (1333)
..++.... .+.+++++.+.+..+.++++.+++.+.++..+..|+..++..+..+.++.++.+|+.++++.+++.+...
T Consensus 255 ~~~~~~~~--~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~ 332 (582)
T 3b60_A 255 IQLIASLA--LAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQEKDEGK 332 (582)
T ss_dssp HHHHHHHH--HHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSCCCCC
T ss_pred HHHHHHHH--HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 99999999--9999999999998499989999999999999999999999999999999999999999975998766777
Q ss_pred CCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCC-CEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEECC
Q ss_conf 889889984089832289707865556788633237-7675189099998789999468999984897579985799979
Q 000720 581 EPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG 659 (1333)
Q Consensus 581 ~~~~~~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~v~i~G~~GsGKStLl~~ilge~~~~~G~vi~~~g 659 (1333)
.+.......|+++|++|+|+.+ +.+.|+| |+++++|+.++|+||||||||||+++|+|.++|.+|++ .++|
T Consensus 333 -~~~~~~~~~i~~~~v~~~y~~~------~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i-~~~g 404 (582)
T 3b60_A 333 -RVIDRATGDLEFRNVTFTYPGR------EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHI-LMDG 404 (582)
T ss_dssp -BCCSCCCCCEEEEEEEECSSSS------SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEE-EETT
T ss_pred -CCCCCCCCCEEEEEEEEECCCC------CCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEE-EECC
T ss_conf -7777888847999889973999------9744156159976999899989999989999999861068989769-7999
Q ss_pred -------------EEEEECCCCCCCCCCHHHHHCCCC--CCCHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCHH
Q ss_conf -------------479980788788887889960397--67877899999980121378752079964137888978968
Q 000720 660 -------------KKAYVPQSSWIQTGTIRENILFGK--DMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGG 724 (1333)
Q Consensus 660 -------------~iayv~Q~~wi~~~TireNIlfg~--~~~~~~y~~v~~~c~L~~dl~~l~~gd~t~IGe~g~~LSGG 724 (1333)
+++|++|+|+++++|++|||.+|. ..++++.+++++.+.+.+.++.+|+|.+|.+|++|.+||||
T Consensus 405 ~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgG 484 (582)
T 3b60_A 405 HDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGG 484 (582)
T ss_dssp EETTTBCHHHHHHTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHH
T ss_pred EECCCCCHHHHHHHCEEECCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCHH
T ss_conf 98230699999960808806874778789999854599998999999999984979999845041145114798878999
Q ss_pred HHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHCCCEEEEEECCEEEECCCHH
Q ss_conf 99999999998149989998187879799999999999998871998699954760046108989998298698825837
Q 000720 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYE 804 (1333)
Q Consensus 725 QkqRi~lARAly~~~~i~llDdp~salD~~~~~~i~~~~~~~~l~~ktvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~ 804 (1333)
||||++||||++++|++++||||||+||++++..+.+ .+....+++|+|++||+++.+..||+|++|++|++++.|+++
T Consensus 485 q~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~-~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~ 563 (582)
T 3b60_A 485 QRQRIAIARALLRDSPILILDEATSALDTESERAIQA-ALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHS 563 (582)
T ss_dssp HHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHH-HHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHH
T ss_pred HHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHH-HHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHH
T ss_conf 9999999999972899899978655579899999999-999996799799994547789859989999788898845899
Q ss_pred HHHHHCCHHHHHHHHHH
Q ss_conf 88841116999999961
Q 000720 805 DLIADQNSELVRQMKAH 821 (1333)
Q Consensus 805 ~l~~~~~~~~~~~~~~~ 821 (1333)
++++ .+..+.++.+.+
T Consensus 564 ~l~~-~~~~~~~~~~~q 579 (582)
T 3b60_A 564 ELLA-QHGVYAQLHKMQ 579 (582)
T ss_dssp HHHH-HTSSHHHHHHHT
T ss_pred HHHH-CCCHHHHHHHHH
T ss_conf 9987-698899999975
No 8
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=1.00 E-value=1 Score=571.22 Aligned_cols=538 Identities=19% Similarity=0.229 Sum_probs=435.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999989999999999999999999999999999870598877723588999999999999999999999999999999
Q 000720 268 VIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGI 347 (1333)
Q Consensus 268 al~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~~g~ 347 (1333)
.+.+.+++.++...++.++..++..+.|+++..+++.+..... ... .+.++.++++..++..++.....+...+.+.
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (582)
T 3b5x_A 18 TYIRLYKAGLVVSTIALVINAAADTYMISLLKPLLDEGFGNAE--SNF-LRILPFMILGLMFVRGLSGFASSYCLSWVSG 94 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9988999999999999999999999999999999999864686--679-9999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHCCCCC---CCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999997334458---9996799999996499999999-9999999899999999999999844688999999
Q 000720 348 RVRSALTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFF-LYIHRIWLLPVQVFLALVILYKNLGAAPAFAALF 423 (1333)
Q Consensus 348 rir~~l~~~Iy~K~L~ls~~---~~~~G~I~Nlms~D~~~i~~~~-~~~~~~w~~plqi~ial~~L~~~lG~~a~l~gl~ 423 (1333)
++...+...+|+|.++++.. ..++|+++|.++.|++++.++. ..+..++..++.+++++++++. +.|+.++..++
T Consensus 95 ~~~~~lr~~l~~~ll~~~~~~~~~~~~g~l~~rl~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~-~~~~l~li~l~ 173 (582)
T 3b5x_A 95 NVVMQMRRRLFNHFMHMPVRFFDQESTGGLLSRITYDSEQVAGATSRALVSIVREGASIIGLLTLMFW-NSWQLSLVLIV 173 (582)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_conf 99999999999999869999977898789999999889999999999999999999999999999999-82999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999899999999999999999999999999999566999983429999999----99999999999999999999
Q 000720 424 STIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKK----LLRLREIERDSLKKYLYTCS 499 (1333)
Q Consensus 424 ~~ii~~~~~~~~~~~~~~~~~~~m~~~D~R~~~~~EiL~~Ik~IK~~~wE~~f~~~----I~~~R~~E~~~l~~~~~~~a 499 (1333)
++++...+...+.+...+..++.++..+++.+.+.|.++|+++||.|++|+.+.++ ..+.++.+.+..+.......
T Consensus 174 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (582)
T 3b5x_A 174 VAPVVAFAISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVSAQSIADP 253 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999999519999970875999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 99999999879999999999988169877778999999999999999999999999999999999999986235899998
Q 000720 500 AIAFLFWASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPI 579 (1333)
Q Consensus 500 ~~~~~~~~~p~lv~~vtF~~~~~~~~~L~~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~ 579 (1333)
...++.... .+.+++++.+....+.++++.+++.+.++..+..|+..++..+..+.++.++.+|+.++++.+++.+..
T Consensus 254 ~~~~~~~~~--~~~i~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~ 331 (582)
T 3b5x_A 254 VIQMIASLA--LFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLETERDNG 331 (582)
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 999999999--999999999999859988999999999999999999999999999999999999999997589767777
Q ss_pred CCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCC-CEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEC
Q ss_conf 8889889984089832289707865556788633237-767518909999878999946899998489757998579997
Q 000720 580 TEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVH 658 (1333)
Q Consensus 580 ~~~~~~~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~v~i~G~~GsGKStLl~~ilge~~~~~G~vi~~~ 658 (1333)
. .+.......|+++|++|+|+.+ +.+.|+| |+++++|+.++|+||||||||||+++|+|.++|.+|++ .++
T Consensus 332 ~-~~~~~~~~~i~~~~v~~~y~~~------~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i-~~~ 403 (582)
T 3b5x_A 332 K-YEAERVNGEVDVKDVTFTYQGK------EKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSI-CLD 403 (582)
T ss_pred C-CCCCCCCCEEEEEEEEEECCCC------CCCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEE-EEC
T ss_conf 7-7777788828999989972899------8654004169987999899989999979999999965778999879-899
Q ss_pred C-------------EEEEECCCCCCCCCCHHHHHCCCC--CCCHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCH
Q ss_conf 9-------------479980788788887889960397--6787789999998012137875207996413788897896
Q 000720 659 G-------------KKAYVPQSSWIQTGTIRENILFGK--DMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSG 723 (1333)
Q Consensus 659 g-------------~iayv~Q~~wi~~~TireNIlfg~--~~~~~~y~~v~~~c~L~~dl~~l~~gd~t~IGe~g~~LSG 723 (1333)
| +++||+|+|+++++|++|||.+|. ..++++.+++++.+.+.+.++.+|+|++|.+|++|.+|||
T Consensus 404 g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSg 483 (582)
T 3b5x_A 404 GHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSG 483 (582)
T ss_pred CEEHHHCCHHHHHCCEEEECCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHCCCHHHHHHCCCCCCCHHCCCCCCCCH
T ss_conf 99856388999964858982799053102999985668899999999999998798999984765334510688884799
Q ss_pred HHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHCCCEEEEEECCEEEECCCH
Q ss_conf 89999999999814998999818787979999999999999887199869995476004610898999829869882583
Q 000720 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKY 803 (1333)
Q Consensus 724 GQkqRi~lARAly~~~~i~llDdp~salD~~~~~~i~~~~~~~~l~~ktvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~ 803 (1333)
|||||++||||++++|++++||||||+||++++..+.+ .+....+++|+|++||+++.+..||+|++|++|++++.|++
T Consensus 484 Gq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~-~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~ 562 (582)
T 3b5x_A 484 GQRQRVAIARALLRDAPVLILDEATSALDTESERAIQA-ALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRH 562 (582)
T ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHH-HHHHHCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCH
T ss_conf 99999999999974999999978544689999999999-99997289989999368899981998999989989997789
Q ss_pred HHHHHHCCHHHHHHHHHH
Q ss_conf 788841116999999961
Q 000720 804 EDLIADQNSELVRQMKAH 821 (1333)
Q Consensus 804 ~~l~~~~~~~~~~~~~~~ 821 (1333)
+++++ ....+.++.+.+
T Consensus 563 ~~l~~-~~~~~~~~~~~q 579 (582)
T 3b5x_A 563 ADLLA-QDGAYAQLHRIQ 579 (582)
T ss_pred HHHHH-CCCHHHHHHHHH
T ss_conf 99984-885899999986
No 9
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=1.00 E-value=1 Score=570.03 Aligned_cols=542 Identities=21% Similarity=0.240 Sum_probs=425.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999899999999999999999999999999998705988777235889999999999999999999999999999999
Q 000720 269 IIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIR 348 (1333)
Q Consensus 269 l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~~g~r 348 (1333)
+.+.+++.++...++.++..++..+.|+++..+++.+............+.++..+++..++..++.....+...+.+.+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (595)
T 2yl4_A 13 LAYPERRRLAAAVGFLTMSSVISMSAPFFLGKIIDVIYTNPTVDYSDNLTRLCLGLSAVFLCGAAANAIRVYLMQTSGQR 92 (595)
T ss_dssp HHGGGHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98878999999999999999999999999999999997357402667999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHCCCCC---CCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999997334458---9996799999996499999999-99999998999999999999998446889999999
Q 000720 349 VRSALTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFF-LYIHRIWLLPVQVFLALVILYKNLGAAPAFAALFS 424 (1333)
Q Consensus 349 ir~~l~~~Iy~K~L~ls~~---~~~~G~I~Nlms~D~~~i~~~~-~~~~~~w~~plqi~ial~~L~~~lG~~a~l~gl~~ 424 (1333)
+...+...+|+|.++++.. ..++|+++|.++.|++.+.++. ..+..++..++.+++++++++..-. +.++..++.
T Consensus 93 ~~~~lr~~l~~~l~~~~~~~~~~~~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~-~l~li~l~~ 171 (595)
T 2yl4_A 93 IVNRLRTSLFSSILRQEVAFFDKTRTGELINRLSSDTALLGRSVTENLSDGLRAGAQASVGISMMFFVSP-NLATFVLSV 171 (595)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHHHSCHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHCH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_conf 9999999999999819999977798488999999999999999999999999999999999999999819-999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999899999999999999999999999999999566999983429999999----999999999999999999999
Q 000720 425 TIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKK----LLRLREIERDSLKKYLYTCSA 500 (1333)
Q Consensus 425 ~ii~~~~~~~~~~~~~~~~~~~m~~~D~R~~~~~EiL~~Ik~IK~~~wE~~f~~~----I~~~R~~E~~~l~~~~~~~a~ 500 (1333)
+++..++...+.+...+..++.++..++..+.+.|.++|+++||.|++|+.+.++ ..+.++.+.+..+........
T Consensus 172 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (595)
T 2yl4_A 172 VPPVSIIAVIYGRYLRKLTKVTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEAFARAGFFGA 251 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999981199999837569999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-CCCC
Q ss_conf 999999987999999999998816987777899999999999999999999999999999999999998623589-9998
Q 000720 501 IAFLFWASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQ-KKPI 579 (1333)
Q Consensus 501 ~~~~~~~~p~lv~~vtF~~~~~~~~~L~~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~-~~~~ 579 (1333)
..++. ....+.+++++.+....+.++++.+++.+.+...+..|+..++..+..+.++.++.+|+.++++.+++ ++..
T Consensus 252 ~~~~~--~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~ 329 (595)
T 2yl4_A 252 TGLSG--NLIVLSVLYKGGLLMGSAHMTVGELSSFLMYAFWVGISIGGLSSFYSELMKGLGAGGRLWELLEREPKLPFNE 329 (595)
T ss_dssp HHHHH--HHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSSCSSC
T ss_pred HHHHH--HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 99999--9999999999999998699789999999999999999999999999999999999999999983897667777
Q ss_pred CCCCCCCCCCC-EEEEEEEEECCCCCCCCCCCCCCCCC-CEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEE
Q ss_conf 88898899840-89832289707865556788633237-76751890999987899994689999848975799857999
Q 000720 580 TEPTSKASDVA-IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKV 657 (1333)
Q Consensus 580 ~~~~~~~~~~~-I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~v~i~G~~GsGKStLl~~ilge~~~~~G~vi~~ 657 (1333)
...+....... |+++|++|+|+.+ ++.+.|+| ||++++|+.++|+||||||||||+++|+|.++|.+|++ .+
T Consensus 330 ~~~~~~~~~~~~i~~~~v~~~y~~~-----~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i-~~ 403 (595)
T 2yl4_A 330 GVILNEKSFQGALEFKNVHFAYPAR-----PEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTI-SL 403 (595)
T ss_dssp SBCCCTTTCCCCEEEEEEEEECSSC-----TTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEE-EE
T ss_pred CCCCCCCCCCCEEEEEEEEEEECCC-----CCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEE-EE
T ss_conf 8777767899838999889985899-----88812011279984998899989999979999999825857898379-99
Q ss_pred CC-------------EEEEECCCCCCCCCCHHHHHCCCCC----CCHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCC
Q ss_conf 79-------------4799807887888878899603976----787789999998012137875207996413788897
Q 000720 658 HG-------------KKAYVPQSSWIQTGTIRENILFGKD----MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1333)
Q Consensus 658 ~g-------------~iayv~Q~~wi~~~TireNIlfg~~----~~~~~y~~v~~~c~L~~dl~~l~~gd~t~IGe~g~~ 720 (1333)
+| +++||+|+|+++++|++|||.+|.+ .++++.+++++.+.+.+.++.+|+|.+|.+|++|.+
T Consensus 404 ~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~ 483 (595)
T 2yl4_A 404 DGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVL 483 (595)
T ss_dssp TTEETTTBCHHHHHHSEEEECSSCCCCSSBHHHHHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCC
T ss_pred CCEEHHHCCHHHHHHCEEEECCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCC
T ss_conf 99981117999997322898368832687799998405877665689999999998697999974732013501688786
Q ss_pred CCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHCCCEEEEEECCEEEEC
Q ss_conf 89689999999999814998999818787979999999999999887199869995476004610898999829869882
Q 000720 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQS 800 (1333)
Q Consensus 721 LSGGQkqRi~lARAly~~~~i~llDdp~salD~~~~~~i~~~~~~~~l~~ktvilvtH~~~~l~~~d~i~~l~~G~i~~~ 800 (1333)
||||||||++||||++++|++++||||||+||+++...+. +.+....+++|+|++||+++.+..||+|++|++|++++.
T Consensus 484 LSgGq~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~-~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~ 562 (595)
T 2yl4_A 484 LSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQ-EALDRLMDGRTVLVIAHRLSTIKNANMVAVLDQGKITEY 562 (595)
T ss_dssp CCHHHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHH-HHHHHHHTTSEEEEECCCHHHHHHSSEEEEEETTEEEEE
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHH-HHHHHHHCCCEEEEEECCHHHHHCCCEEEEEECCEEEEE
T ss_conf 8999999999999997599999998866689989999999-999999659979999468789975998999989989997
Q ss_pred CCHHHHHHHCCHHHHHHHHH
Q ss_conf 58378884111699999996
Q 000720 801 GKYEDLIADQNSELVRQMKA 820 (1333)
Q Consensus 801 G~~~~l~~~~~~~~~~~~~~ 820 (1333)
|+++|++++.+..+.++...
T Consensus 563 g~~~~l~~~~~~~~~~~~~~ 582 (595)
T 2yl4_A 563 GKHEELLSKPNGIYRKLMNK 582 (595)
T ss_dssp ECSCC------C--------
T ss_pred CCHHHHHHCCCHHHHHHHHH
T ss_conf 88999974787299999997
No 10
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=1.00 E-value=1 Score=521.18 Aligned_cols=541 Identities=17% Similarity=0.219 Sum_probs=393.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8999999999999999999999999999987059887772-358899999999999999999999999999999999999
Q 000720 274 WKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSS-YHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSA 352 (1333)
Q Consensus 274 ~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~-~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~~g~rir~~ 352 (1333)
|+.+++..++.++...+..+.|+++..+++.......... ......++..+++..++..+......+...+.+.++...
T Consensus 704 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~ 783 (1284)
T 3g5u_A 704 WPYFVVGIFCAIINGGLQPAFSVIFSKVVGVFTNGGPPETQRQNSNLFSLLFLILGIISFITFFLQGFTFGKAGEILTKR 783 (1284)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 79999999999999999999999999999998556850336779999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHCCCC----C-CCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999733445----8-99967999999964999999999-999999899999999999999844688999999999
Q 000720 353 LTVLIYKRSMAIKF----A-GPSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGAAPAFAALFSTI 426 (1333)
Q Consensus 353 l~~~Iy~K~L~ls~----~-~~~~G~I~Nlms~D~~~i~~~~~-~~~~~w~~plqi~ial~~L~~~lG~~a~l~gl~~~i 426 (1333)
+...+|+|.++.+. . ..++|+++|.++.|++.+.++.. .+..+....+.++.++.+++ .++|..++..++++.
T Consensus 784 lr~~l~~~ll~~~~~ff~~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~~~~~~~~i~~~-~~~~~l~lv~l~~~p 862 (1284)
T 3g5u_A 784 LRYMVFKSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGATGSRLAVIFQNIANLGTGIIISL-IYGWQLTLLLLAIVP 862 (1284)
T ss_dssp HHHHHHHHHHHCCSHHHHSCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SSCSSSHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_conf 9999999998399888757899889999999999999999999999999999999999999999-996999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999899999999999999999999999999999566999983429999999999999999999999999999999999
Q 000720 427 FVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIAFLFW 506 (1333)
Q Consensus 427 i~~~~~~~~~~~~~~~~~~~m~~~D~R~~~~~EiL~~Ik~IK~~~wE~~f~~~I~~~R~~E~~~l~~~~~~~a~~~~~~~ 506 (1333)
+...+.....+...+...+..+..++..+...|.+.|+++||.+++|+.+.++..+.-+...+...+.....+....+..
T Consensus 863 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~ti~a~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 942 (1284)
T 3g5u_A 863 IIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQKFETMYAQSLQIPYRNAMKKAHVFGITFSFTQ 942 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTTTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999889999984659999999999999999999999999999999999
Q ss_pred HH--HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC--CCCC
Q ss_conf 98--7999999999998816987777899999999999999999999999999999999999998623589999--8888
Q 000720 507 AS--PTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKP--ITEP 582 (1333)
Q Consensus 507 ~~--p~lv~~vtF~~~~~~~~~L~~~~vft~lalf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~--~~~~ 582 (1333)
.. ...+..++++.+....+.++.+.++..+..+.....|+..+......+.++..+.+|+.++++.+++.+. ....
T Consensus 943 ~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~ 1022 (1284)
T 3g5u_A 943 AMMYFSYAAAFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIEKTPEIDSYSTQGL 1022 (1284)
T ss_dssp HHHHHHHHHHHHHHHCCCSSSCSCSTTHHHHHHHHHHHHHHHHHHTSSSCCSTHHHHHHHHHHHHHHSCCSSSSCCSSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 99999999999999999990980699999999999999999999999999999999999999999838876666555665
Q ss_pred CCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCC-CEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEECC--
Q ss_conf 9889984089832289707865556788633237-7675189099998789999468999984897579985799979--
Q 000720 583 TSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-- 659 (1333)
Q Consensus 583 ~~~~~~~~I~i~~~~fsw~~~~~~~~~~~~~L~~-nl~i~~G~~v~i~G~~GsGKStLl~~ilge~~~~~G~vi~~~g-- 659 (1333)
+....+..|+++|++|+|+.. ++.+.|+| ||++++||+++|+|++|||||||+++|.|.+++.+|++ .++|
T Consensus 1023 ~~~~~~g~i~~~~v~~~y~~~-----~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I-~i~g~~ 1096 (1284)
T 3g5u_A 1023 KPNMLEGNVQFSGVVFNYPTR-----PSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSV-FLDGKE 1096 (1284)
T ss_dssp CTTTTSCCEEEEEEEBCCSCG-----GGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEE-ESSSSC
T ss_pred CCCCCCCCEEEEEEEEECCCC-----CCCEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEE-EECCEE
T ss_conf 456777857999989977999-----98700203059976998899988999978999999946867899779-899998
Q ss_pred -----------EEEEECCCCCCCCCCHHHHHCCCCCC---CHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCHHH
Q ss_conf -----------47998078878888788996039767---8778999999801213787520799641378889789689
Q 000720 660 -----------KKAYVPQSSWIQTGTIRENILFGKDM---RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (1333)
Q Consensus 660 -----------~iayv~Q~~wi~~~TireNIlfg~~~---~~~~y~~v~~~c~L~~dl~~l~~gd~t~IGe~g~~LSGGQ 725 (1333)
+++||||+|.++++||+|||.+|.+. +++...++++.+.+.+.++.+|+|.+|.+||+|.+|||||
T Consensus 1097 i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq 1176 (1284)
T 3g5u_A 1097 IKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQ 1176 (1284)
T ss_dssp TTSSCHHHHTTSCEEEESSCCCCSSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHH
T ss_pred CCCCCHHHHHHCEEEECCCCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHH
T ss_conf 00078999970268987787406666999974668778999999999999839599997270424561178889338999
Q ss_pred HHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHCCCEEEEEECCEEEECCCHHH
Q ss_conf 99999999981499899981878797999999999999988719986999547600461089899982986988258378
Q 000720 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYED 805 (1333)
Q Consensus 726 kqRi~lARAly~~~~i~llDdp~salD~~~~~~i~~~~~~~~l~~ktvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~ 805 (1333)
|||++||||++++|++++||||||+||+.+...+. +.+....+++|+|+|||+++.+..||+|++|++|+|++.|++++
T Consensus 1177 ~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~-~~l~~~~~~~tvi~isH~l~~i~~~dri~vl~~G~i~~~g~~~~ 1255 (1284)
T 3g5u_A 1177 KQRIAIARALVRQPHILLLDEATSALDTESEKVVQ-EALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQ 1255 (1284)
T ss_dssp HHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHH-HHHHHHSSSSCEEEECSCTTGGGSCSEEEEEETBEEEEEECHHH
T ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHH-HHHHHHCCCCEEEEEECCHHHHHCCCEEEEEECCEEEEECCHHH
T ss_conf 99999999997499999986875557999999999-99998679998999955879998099899998998999778999
Q ss_pred HHHHCCHHHHHHHHHHHH
Q ss_conf 884111699999996120
Q 000720 806 LIADQNSELVRQMKAHRK 823 (1333)
Q Consensus 806 l~~~~~~~~~~~~~~~~~ 823 (1333)
+++ .++.|.++...+..
T Consensus 1256 l~~-~~g~y~~l~~~q~~ 1272 (1284)
T 3g5u_A 1256 LLA-QKGIYFSMVSVQAG 1272 (1284)
T ss_dssp HHH-SCSHHHHHHHHHC-
T ss_pred HHH-CCCHHHHHHHHHHH
T ss_conf 984-77779999999761
Done!