Query 000721
Match_columns 1332
No_of_seqs 187 out of 1651
Neff 3.3
Searched_HMMs 29240
Date Tue Mar 26 16:58:23 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000721.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_492-496//hhsearch_pdb/000721hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hcs_A TNF receptor-associated 1.0 1 1 180.8 5.5 138 1-159 5-144 (170)
2 3knv_A TNF receptor-associated 1.0 1 1 147.1 2.3 111 2-122 18-131 (141)
3 3hct_A TNF receptor-associated 1.0 1 1 137.5 6.6 103 2-123 6-109 (118)
4 1rmd_A RAG1; V(D)J recombinati 1.0 1 1 127.0 0.5 97 12-123 18-115 (116)
5 2c2l_A CHIP, carboxy terminus 1.0 1 1 100.3 5.8 68 13-94 204-272 (281)
6 4ayc_A E3 ubiquitin-protein li 1.0 1 1 95.7 2.8 53 13-67 49-101 (138)
7 1z6u_A NP95-like ring finger p 1.0 1 1 95.3 1.7 69 11-93 72-142 (150)
8 2kre_A Ubiquitin conjugation f 1.0 1 1 94.8 4.5 69 12-94 24-92 (100)
9 2ckl_B Ubiquitin ligase protei 1.0 1 1 94.8 3.4 70 12-94 49-120 (165)
10 1wgm_A Ubiquitin conjugation f 1.0 1 1 94.5 5.0 71 12-96 17-88 (98)
No 1
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=1.00 E-value=1 Score=180.77 Aligned_cols=138 Identities=26% Similarity=0.572 Sum_probs=123.2
Q ss_pred CCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCEECCCHHHHHHHCC-CCCCCCCCCCCCCCCHHHHCCCCCCH
Q ss_conf 98860101012499992110658766667996782689810215187886209-99999984433342012101353310
Q 000721 1 MGFDNECILNIQSLAGEYFCPVCRLLVYPNEALQSQCTHLYCKPCLTYIVNTT-QACPYDGYLVTEADSKVVLSSAVVPL 79 (1332)
Q Consensus 1 MGfD~E~IlfVEsLeEeLkCPIClEIL~PkEPVQTsCGHtFCksCLeelLksS-~tCPiCRtsIT~sDLkiI~~ssIFPL 79 (1332)
+||+.++ ++.++++|.|+||++++ .+|+++.|||+||..||.+|+..+ ..||.||..+...++. +
T Consensus 5 ~g~~~~~---~~~~~~~~~C~IC~~~~--~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~--------~- 70 (170)
T 3hcs_A 5 QGYDVEF---DPPLESKYECPICLMAL--REAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLF--------P- 70 (170)
T ss_dssp CCBCSEE---SSCCCGGGBCTTTCSBC--SSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCE--------E-
T ss_pred CCCCHHH---CCCCCCCCCCCCCCHHH--CCCEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHH--------H-
T ss_conf 9998210---13799988997879265--59277878988779999999975799999986575344423--------4-
Q ss_pred HHHHHHHHHHHHCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCHHHHHHHHH-HCCCCCCCCCCC
Q ss_conf 1001789977411000265589898633456787855888998886401787600111878999984-189999999999
Q 000721 80 VESNKALAETIGKITVHCLFHRSGCTWQGPLSECTSHCSGCAFGNSPVVCNRCAIQIVHRQVQEHAQ-NCPGVQPQASQP 158 (1332)
Q Consensus 80 LEsDKaLEKEIskLkVkCpNkk~GCqwsGtLSELkSHlqsCeY~eRpV~Cp~CGssIpRseLQEHLe-eCPK~pVqCPns 158 (1332)
+..+++.+..+.|+|+|. ||.|.+.+.++..|+..|.|. .+.|+.|++.+.+.+|.+|++ .|+...+.|++.
T Consensus 71 ---~~~~~~~i~~l~v~C~n~--GC~~~~~~~~l~~H~~~C~~~--~v~C~~C~~~~~r~~l~~H~~~~C~~r~~~C~~C 143 (170)
T 3hcs_A 71 ---DNFAKREILSLMVKCPNE--GCLHKMELRHLEDHQAHCEFA--LMDCPQCQRPFQKFHINIHILKDCPRRQVSCDNC 143 (170)
T ss_dssp ---CHHHHHHHHTSEEECCST--TCCCEEEGGGHHHHHTTCTTS--EEECTTTCCEEEGGGHHHHHHHTCTTCEEECTTT
T ss_pred ---HHHHHHHHHHCCCCCCCC--CCCCEECHHHHHHHHHCCCCE--EEECCCCCHHHHHHHHHHHHHHHCCCCCEECCCC
T ss_conf ---578888774024679987--778452286799998569942--3689977868888899877361289977079899
Q ss_pred C
Q ss_conf 7
Q 000721 159 E 159 (1332)
Q Consensus 159 c 159 (1332)
.
T Consensus 144 ~ 144 (170)
T 3hcs_A 144 A 144 (170)
T ss_dssp C
T ss_pred C
T ss_conf 9
No 2
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=1.00 E-value=1 Score=147.08 Aligned_cols=111 Identities=29% Similarity=0.621 Sum_probs=93.3
Q ss_pred CCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCEECCCHHHHHHHCCC-CCCCCCCCCCCCCCH-HHHCCCCCCH
Q ss_conf 88601010124999921106587666679967826898102151878862099-999998443334201-2101353310
Q 000721 2 GFDNECILNIQSLAGEYFCPVCRLLVYPNEALQSQCTHLYCKPCLTYIVNTTQ-ACPYDGYLVTEADSK-VVLSSAVVPL 79 (1332)
Q Consensus 2 GfD~E~IlfVEsLeEeLkCPIClEIL~PkEPVQTsCGHtFCksCLeelLksS~-tCPiCRtsIT~sDLk-iI~~ssIFPL 79 (1332)
||+.+++. +.++++|.|+||++++ .+|+++.|||+||..||.+|+..+. .||.||..+...+.. .+..+.+|+
T Consensus 18 g~~~~~~~--~~l~~~~~C~IC~~~~--~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~l~~~~~~~- 92 (141)
T 3knv_A 18 GFSKTLLG--TKLEAKYLCSACRNVL--RRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIYEEGISILESSSAFP- 92 (141)
T ss_dssp SBCGGGTG--GGCCGGGBCTTTCSBC--SSEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCCCTTTTEECGGGCEE-
T ss_pred CCCHHHHH--CCCCCCCCCCCCCHHH--CCCEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHCC-
T ss_conf 86055540--1688585998889143--095888999900789999999628998999898166454212242654214-
Q ss_pred HHHHHHHHHHHHCEECCCCCCCCCCCCCCCCCCCCC-CCCCCCC
Q ss_conf 100178997741100026558989863345678785-5888998
Q 000721 80 VESNKALAETIGKITVHCLFHRSGCTWQGPLSECTS-HCSGCAF 122 (1332)
Q Consensus 80 LEsDKaLEKEIskLkVkCpNkk~GCqwsGtLSELkS-HlqsCeY 122 (1332)
+..++++|..+.|+|+| .||.|.+.+.+++. |+..|..
T Consensus 93 ---d~~~~~~i~~L~v~Cpn--~GC~~~~~l~~l~~~H~~~~~~ 131 (141)
T 3knv_A 93 ---DNAARREVESLPAVCPS--DGCTWKGTLKEYESCHEGRCPL 131 (141)
T ss_dssp ---CHHHHHHHHTSEEECCS--TTCCCEEEHHHHHHHTTTCCHH
T ss_pred ---CHHHHHHHCCCCCCCCC--CCCCCEEEHHHHHHHHHHHHHH
T ss_conf ---69999997260461599--9998886789989999998688
No 3
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=1.00 E-value=1 Score=137.47 Aligned_cols=103 Identities=29% Similarity=0.639 Sum_probs=90.4
Q ss_pred CCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCEECCCHHHHHHHCCC-CCCCCCCCCCCCCCHHHHCCCCCCHH
Q ss_conf 88601010124999921106587666679967826898102151878862099-99999844333420121013533101
Q 000721 2 GFDNECILNIQSLAGEYFCPVCRLLVYPNEALQSQCTHLYCKPCLTYIVNTTQ-ACPYDGYLVTEADSKVVLSSAVVPLV 80 (1332)
Q Consensus 2 GfD~E~IlfVEsLeEeLkCPIClEIL~PkEPVQTsCGHtFCksCLeelLksS~-tCPiCRtsIT~sDLkiI~~ssIFPLL 80 (1332)
||+.++ ++.+.+++.|+||.+++ .+|+.+.|||+||..||.+|+..+. .||+||..+...++. +
T Consensus 6 g~~~~~---~~~~~~~~~C~IC~~~~--~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~--------~-- 70 (118)
T 3hct_A 6 GYDVEF---DPPLESKYECPICLMAL--REAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLF--------P-- 70 (118)
T ss_dssp CBCSCB---SSCCCGGGBCTTTCSBC--SSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCE--------E--
T ss_pred CCCHHH---CCCCCCCCCCCCCCHHH--CCEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCC--------C--
T ss_conf 988321---23799997997589334--69088884796049999999964899889988884888623--------4--
Q ss_pred HHHHHHHHHHHCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 0017899774110002655898986334567878558889988
Q 000721 81 ESNKALAETIGKITVHCLFHRSGCTWQGPLSECTSHCSGCAFG 123 (1332)
Q Consensus 81 EsDKaLEKEIskLkVkCpNkk~GCqwsGtLSELkSHlqsCeY~ 123 (1332)
+..+++.+..+.|+|.| .||.|.+.+.+++.|+.+|.+.
T Consensus 71 --~~~l~~~i~~l~v~C~n--~gC~~~~~~~~l~~H~~~c~~~ 109 (118)
T 3hct_A 71 --DNFAKREILSLMVKCPN--EGCLHKMELRHLEDHQAHCEFA 109 (118)
T ss_dssp --CHHHHHHHHTSEEECSS--TTCCCEEEGGGSGGGTSSSCC-
T ss_pred --CHHHHHHHCCCEEECCC--CCCCCEEEEHHHHHHHHHCHHH
T ss_conf --79999998066327899--9898987507999999976330
No 4
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=1.00 E-value=1 Score=127.01 Aligned_cols=97 Identities=19% Similarity=0.479 Sum_probs=83.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEECCCCCEECCCHHHHHHHC-CCCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 49999211065876666799678268981021518788620-99999998443334201210135331010017899774
Q 000721 12 QSLAGEYFCPVCRLLVYPNEALQSQCTHLYCKPCLTYIVNT-TQACPYDGYLVTEADSKVVLSSAVVPLVESNKALAETI 90 (1332)
Q Consensus 12 EsLeEeLkCPIClEIL~PkEPVQTsCGHtFCksCLeelLks-S~tCPiCRtsIT~sDLkiI~~ssIFPLLEsDKaLEKEI 90 (1332)
+.+.+++.|+||++++ .+|+.+.|||+||..||.+|+.. +..||.||..+...++. . .+..+.+.+
T Consensus 18 ~~~~~~~~C~IC~~~~--~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~--------~---~~~~l~~~i 84 (116)
T 1rmd_A 18 AHFVKSISCQICEHIL--ADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLE--------S---PVKSFLNIL 84 (116)
T ss_dssp HHHHHHTBCTTTCSBC--SSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCB--------C---CCHHHHHHH
T ss_pred HHCCCCCCCCCCCCHH--CCCEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHCC--------C---CHHHHHHHH
T ss_conf 7524799987789076--19477579884309999999948809689998877986535--------6---499999999
Q ss_pred HCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 110002655898986334567878558889988
Q 000721 91 GKITVHCLFHRSGCTWQGPLSECTSHCSGCAFG 123 (1332)
Q Consensus 91 skLkVkCpNkk~GCqwsGtLSELkSHlqsCeY~ 123 (1332)
..+.|+|+|. ||.|.+.+.+++.|+.+|.+.
T Consensus 85 ~~l~v~C~~~--gC~~~~~~~~~~~H~~~C~~~ 115 (116)
T 1rmd_A 85 NSLMVKCPAQ--DCNEEVSLEKYNHHVSSHKES 115 (116)
T ss_dssp HHCEEECCST--TCCCEEEHHHHHHHHHTSCCC
T ss_pred HHHCCCCCCC--CCCCHHHHHHHHHHHHHHHCC
T ss_conf 9730879989--995332286899999873126
No 5
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=1.00 E-value=1 Score=100.33 Aligned_cols=68 Identities=15% Similarity=0.111 Sum_probs=56.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCEECCCCCEECCCHHHHHHHCCC-CCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHH
Q ss_conf 999921106587666679967826898102151878862099-9999984433342012101353310100178997741
Q 000721 13 SLAGEYFCPVCRLLVYPNEALQSQCTHLYCKPCLTYIVNTTQ-ACPYDGYLVTEADSKVVLSSAVVPLVESNKALAETIG 91 (1332)
Q Consensus 13 sLeEeLkCPIClEIL~PkEPVQTsCGHtFCksCLeelLksS~-tCPiCRtsIT~sDLkiI~~ssIFPLLEsDKaLEKEIs 91 (1332)
.+++.|.|+||+++| ++||++.|||+||..||..|+..+. .||+|+..+...++. + |..+.+.|.
T Consensus 204 ~~~~~~~c~i~~~~~--~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~--------~----n~~l~~~i~ 269 (281)
T 2c2l_A 204 DIPDYLCGKISFELM--REPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLI--------P----NLAMKEVID 269 (281)
T ss_dssp CCCSTTBCTTTCSBC--SSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCE--------E----CHHHHHHHH
T ss_pred CCCCCCCCCCCCCHH--CCCEECCCCCEECHHHHHHHHHHCCCCCCCCCCCCCHHCCC--------C----CHHHHHHHH
T ss_conf 999661792738871--38859999897779999999987879996978999521086--------1----699999999
Q ss_pred CEE
Q ss_conf 100
Q 000721 92 KIT 94 (1332)
Q Consensus 92 kLk 94 (1332)
.+.
T Consensus 270 ~~~ 272 (281)
T 2c2l_A 270 AFI 272 (281)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 999
No 6
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=1.00 E-value=1 Score=95.74 Aligned_cols=53 Identities=23% Similarity=0.504 Sum_probs=46.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCEECCCCCEECCCHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 9999211065876666799678268981021518788620999999984433342
Q 000721 13 SLAGEYFCPVCRLLVYPNEALQSQCTHLYCKPCLTYIVNTTQACPYDGYLVTEAD 67 (1332)
Q Consensus 13 sLeEeLkCPIClEIL~PkEPVQTsCGHtFCksCLeelLksS~tCPiCRtsIT~sD 67 (1332)
.+.+++.|+||.+++ .+|+.+.|||+||..||..|+..+..||+||..+....
T Consensus 49 ~~~~~~~C~iC~~~~--~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 101 (138)
T 4ayc_A 49 VLENELQCIICSEYF--IEAVTLNCAHSFCSYCINEWMKRKIECPICRKDIKSKT 101 (138)
T ss_dssp HHHHHSBCTTTCSBC--SSEEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCCEE
T ss_pred HCCCCCCCCCCCCCC--CCCEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf 561159975627232--79667889998469999999976996999998278899
No 7
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=1.00 E-value=1 Score=95.35 Aligned_cols=69 Identities=22% Similarity=0.462 Sum_probs=54.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEECCCCCEECCCHHHHHHHCCC-CCCCCCCCCCCC-CCHHHHCCCCCCHHHHHHHHHH
Q ss_conf 24999921106587666679967826898102151878862099-999998443334-2012101353310100178997
Q 000721 11 IQSLAGEYFCPVCRLLVYPNEALQSQCTHLYCKPCLTYIVNTTQ-ACPYDGYLVTEA-DSKVVLSSAVVPLVESNKALAE 88 (1332)
Q Consensus 11 VEsLeEeLkCPIClEIL~PkEPVQTsCGHtFCksCLeelLksS~-tCPiCRtsIT~s-DLkiI~~ssIFPLLEsDKaLEK 88 (1332)
++.+.+++.|+||++++ .+|+.+.|||+||..||..|+..+. .||+||..+... .+. .|..+.+
T Consensus 72 ~~~l~~~~~C~IC~~~~--~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~------------~n~~l~~ 137 (150)
T 1z6u_A 72 LKKLEQSFMCVCCQELV--YQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMI------------PNEILQT 137 (150)
T ss_dssp HHHHHHHTBCTTTSSBC--SSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCC------------BCHHHHH
T ss_pred HHHCCCCCEEECCCHHH--CCCEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC------------CCHHHHH
T ss_conf 87074279900579042--598882899903199999999839895999883578877788------------7989999
Q ss_pred HHHCE
Q ss_conf 74110
Q 000721 89 TIGKI 93 (1332)
Q Consensus 89 EIskL 93 (1332)
.+..+
T Consensus 138 lv~~~ 142 (150)
T 1z6u_A 138 LLDLF 142 (150)
T ss_dssp HHHHH
T ss_pred HHHHH
T ss_conf 99997
No 8
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=1.00 E-value=1 Score=94.81 Aligned_cols=69 Identities=14% Similarity=0.209 Sum_probs=58.2
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEECCCCCEECCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHH
Q ss_conf 49999211065876666799678268981021518788620999999984433342012101353310100178997741
Q 000721 12 QSLAGEYFCPVCRLLVYPNEALQSQCTHLYCKPCLTYIVNTTQACPYDGYLVTEADSKVVLSSAVVPLVESNKALAETIG 91 (1332)
Q Consensus 12 EsLeEeLkCPIClEIL~PkEPVQTsCGHtFCksCLeelLksS~tCPiCRtsIT~sDLkiI~~ssIFPLLEsDKaLEKEIs 91 (1332)
..++++|.|+||+++| ++||.+.|||+||..||..|+.....||.|+..+...++. + |..+.+.|.
T Consensus 24 ~~~p~~~~CpI~~~~m--~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~L~--------p----n~~Lk~~I~ 89 (100)
T 2kre_A 24 SDAPDEFRDPLMDTLM--TDPVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTESMLE--------P----VPELKEQIQ 89 (100)
T ss_dssp SSCSTTTBCTTTCSBC--SSEEEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCTTSSE--------E----CHHHHHHHH
T ss_pred CCCCHHHCCCCCCCCC--CCCEECCCCCEECHHHHHHHHHCCCCCCCCCCCCCHHHCE--------E----CHHHHHHHH
T ss_conf 1580760881715725--5986999999886699999997389899988988856362--------8----799999999
Q ss_pred CEE
Q ss_conf 100
Q 000721 92 KIT 94 (1332)
Q Consensus 92 kLk 94 (1332)
.+.
T Consensus 90 ~~~ 92 (100)
T 2kre_A 90 AWM 92 (100)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 999
No 9
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=1.00 E-value=1 Score=94.77 Aligned_cols=70 Identities=21% Similarity=0.577 Sum_probs=54.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEC-CCCCEECCCHHHHHHHC-CCCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 499992110658766667996782-68981021518788620-9999999844333420121013533101001789977
Q 000721 12 QSLAGEYFCPVCRLLVYPNEALQS-QCTHLYCKPCLTYIVNT-TQACPYDGYLVTEADSKVVLSSAVVPLVESNKALAET 89 (1332)
Q Consensus 12 EsLeEeLkCPIClEIL~PkEPVQT-sCGHtFCksCLeelLks-S~tCPiCRtsIT~sDLkiI~~ssIFPLLEsDKaLEKE 89 (1332)
+.+.+++.|+||++++ .+|+.+ .|||+||..||.+|+.. ...||+||..+...+ .+..|..+.++
T Consensus 49 ~~~~~~~~C~IC~~~~--~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~-----------~l~~~~~l~~~ 115 (165)
T 2ckl_B 49 RSLHSELMCPICLDML--KNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKR-----------SLRPDPNFDAL 115 (165)
T ss_dssp -CCHHHHBCTTTSSBC--SSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSGG-----------GEEECHHHHHH
T ss_pred HHCCCCCCCCCCCHHH--HCCCEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCC-----------CCCCCHHHHHH
T ss_conf 2079999996269276--3938848998962899999999868297999998078856-----------68868899999
Q ss_pred HHCEE
Q ss_conf 41100
Q 000721 90 IGKIT 94 (1332)
Q Consensus 90 IskLk 94 (1332)
+..+.
T Consensus 116 i~~~~ 120 (165)
T 2ckl_B 116 ISKIY 120 (165)
T ss_dssp HHHHC
T ss_pred HHHHH
T ss_conf 99997
No 10
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=1.00 E-value=1 Score=94.53 Aligned_cols=71 Identities=15% Similarity=0.246 Sum_probs=59.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEECCCC-CEECCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 499992110658766667996782689-8102151878862099999998443334201210135331010017899774
Q 000721 12 QSLAGEYFCPVCRLLVYPNEALQSQCT-HLYCKPCLTYIVNTTQACPYDGYLVTEADSKVVLSSAVVPLVESNKALAETI 90 (1332)
Q Consensus 12 EsLeEeLkCPIClEIL~PkEPVQTsCG-HtFCksCLeelLksS~tCPiCRtsIT~sDLkiI~~ssIFPLLEsDKaLEKEI 90 (1332)
..++++|.|+||+++| ++||++.|| |+||+.||.+|+.....||+|+..+...++. + |..+++.|
T Consensus 17 ~~~p~~~~CpI~~~~m--~dPV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~~L~--------p----n~~Lk~~I 82 (98)
T 1wgm_A 17 ADACDEFLDPIMSTLM--CDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIR--------P----NTELKEKI 82 (98)
T ss_dssp CSCCTTTBCTTTCSBC--SSEEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTTSE--------E----CHHHHHHH
T ss_pred HCCCHHCCCCCCCCCC--CCCEECCCCCEEECHHHHHHHHHHCCCCCCCCCCCCHHHCE--------E----CHHHHHHH
T ss_conf 1681753871725642--49869898992799899999998479898978998856334--------8----59999999
Q ss_pred HCEECC
Q ss_conf 110002
Q 000721 91 GKITVH 96 (1332)
Q Consensus 91 skLkVk 96 (1332)
..+...
T Consensus 83 ~~~~~~ 88 (98)
T 1wgm_A 83 QRWLAE 88 (98)
T ss_dssp HHHHHH
T ss_pred HHHHHH
T ss_conf 999997
Done!