Your job contains 1 sequence.
>000722
MLRLKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLV
GAKLEKLAEGELEHKGKPTEAMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVT
SGFASPPPSTKGRHFLVICCVNKAIFLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGD
VPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLI
LWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKE
LRRIKPVPKLACHSVASWCHPRAPNLDILTCVKDSHIWAIEHPTYSALTRPLCELSSLVP
PQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPRSLPAVAPLPTPSGSRDHSA
VYIVERELKLVNFQLSSAANPSLGNNGSLSETGRLKGDLPDALQIKQIKKHISTPVPHDS
YSILSVSSSGKYLAVVWPDIPYFSVYKVSDWSIVDSGSARLLAWDTCRDRFAILESALTP
RLPIIPKGGSSRKAKEAAAAAAAAQAAAASAASSATVQARILLDDGTSNILMRSIGGSSE
PVIGLHGGALLGVAYRTSRRISPIAATAISTIQSMPLSGFGSSGLSSFTTFDDGFSSQKS
PAEAAPQNFQLYSWETFQPVGGLLPQPEWTAWDQTVEYCAFAYQHYIVISSLCPQYRYLG
DVAIPYATGAVWHRRQLFVVTPTTIECVFVDAGVAAIDVETMKMKEEMKLKEVQSRAVAE
HGELALIAVESSQTAAQDRIKLRPPMLQVVRLASFQHAASVPPFLTMPKQTKVEGDDSMM
PKDIEERKVNEIAVGGGGVAVAVTRFPTEQKRPIGPLVVVGVKDGVLWLIDRYMCAHALS
LSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLAQFMLGMGYATEALHLPGISKRLEF
DLAMQSNDLKRALQCLITMSNSRDIGQDHPGLDLNDILTLTTKKENIVEAVQGIVKFAKE
FLDLIDAADATGQANIAREALKRLAAAGSVKGALQGHELRGLALRLANHGELTRLSGLVT
NLISLGLGREAAFSAAILGDNALMEKAWQDTGMLAEAVLHAHAHGRPSLKNLVEAWNKML
QKEVDHTPTAKTDAAAAFLASLEEPKLTSLAEAGKKPPIEILPPGMPSLGSITIQKKPVP
GSLNSQQQPGKPLAVEGSQQQPGKPLAIEGSQQQPSEQLAVEAPPTTTPTEESTPPPGEG
SEPTSGDKGPIQSSESNSDLAASASVERAPAASITDEAASEGPSQVTDPQEKPQDPGTPE
TNVPEASFALV
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 000722
(1331 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2176836 - symbol:AT5G24710 "AT5G24710" species... 4790 0. 1
POMBASE|SPBC16C6.13c - symbol:sec27 "coatomer beta' subun... 97 2.6e-06 3
FB|FBgn0025724 - symbol:beta'Cop "beta'-coatomer protein"... 90 4.1e-06 5
ASPGD|ASPL0000006005 - symbol:AN5972 species:162425 "Emer... 90 3.8e-05 5
UNIPROTKB|F1S845 - symbol:TAF5 "Uncharacterized protein" ... 135 3.9e-05 1
UNIPROTKB|I3LC69 - symbol:WDR81 "Uncharacterized protein"... 110 0.00012 2
ZFIN|ZDB-GENE-051120-180 - symbol:taf5 "TAF5 RNA polymera... 142 0.00027 2
SGD|S000003105 - symbol:SEC27 "Essential beta'-coat prote... 90 0.00047 3
TAIR|locus:2012971 - symbol:AT1G71840 "AT1G71840" species... 122 0.00064 1
UNIPROTKB|E1BVN5 - symbol:PLRG1 "Uncharacterized protein"... 122 0.00092 1
UNIPROTKB|Q9BRP4 - symbol:PAAF1 "Proteasomal ATPase-assoc... 120 0.00099 1
>TAIR|locus:2176836 [details] [associations]
symbol:AT5G24710 "AT5G24710" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0005886 "plasma membrane" evidence=IDA]
[GO:0005829 "cytosol" evidence=RCA] InterPro:IPR017986
InterPro:IPR001680 InterPro:IPR015943 PROSITE:PS50082
PROSITE:PS50294 SMART:SM00320 GO:GO:0005886 EMBL:CP002688
Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678
InterPro:IPR019775 IPI:IPI00536085 RefSeq:NP_197859.4
UniGene:At.22853 ProteinModelPortal:F4KIH8 SMR:F4KIH8 PRIDE:F4KIH8
EnsemblPlants:AT5G24710.1 GeneID:832542 KEGG:ath:AT5G24710
OMA:FMASSGE Uniprot:F4KIH8
Length = 1377
Score = 4790 (1691.2 bits), Expect = 0., P = 0.
Identities = 929/1246 (74%), Positives = 1022/1246 (82%)
Query: 1 MLRLKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLV 60
MLR +AFR TN KIVKIQ+HPTHPWLVTAD SDHVSVWNWEHRQVIYELKAGGVD+RRLV
Sbjct: 1 MLRARAFRQTNGKIVKIQVHPTHPWLVTADDSDHVSVWNWEHRQVIYELKAGGVDERRLV 60
Query: 61 XXXXXXXXXXXXXXXXXPTEAMRGGSVKQVNFYDDDVRFWQLWRNRXXXXXXXXXVSNVT 120
PTEA+RGGSVKQV FYDDDVR+WQLWRNR V+++T
Sbjct: 61 GAKLEKLAEGESDYKAKPTEAIRGGSVKQVKFYDDDVRYWQLWRNRSAAAESPSAVNHLT 120
Query: 121 SGFASPPPSTKGRHFLVICCVNKAIFLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGD 180
S F SP PSTKGRHFLVICC NKAIFLDLVTMRGRD+PKQELDNKSL+CMEFLSRS+ GD
Sbjct: 121 SAFTSPAPSTKGRHFLVICCENKAIFLDLVTMRGRDVPKQELDNKSLLCMEFLSRSSGGD 180
Query: 181 VPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLI 240
PLVAFGS+DGVIRVLSMI+WKL RRYTGGHKGSI CLM FMASSGEALLVSGGSDGLL+
Sbjct: 181 GPLVAFGSTDGVIRVLSMITWKLARRYTGGHKGSIYCLMNFMASSGEALLVSGGSDGLLV 240
Query: 241 LWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKE 300
LWSADHG DSRELVPKLSLKAHDGGVVAVELSRV G +PQLITIGADKTLAIWDT++FKE
Sbjct: 241 LWSADHGADSRELVPKLSLKAHDGGVVAVELSRVSGSAPQLITIGADKTLAIWDTMTFKE 300
Query: 301 LRRIKPVPKLACHSVASWCHPRAPNLDILTCVKDSHIWAIEHPTYSALTRPLCELSSLVP 360
LRRIKPVPKLACHSVASWCHPRAPNLDILTCVKDSHIW+IEHPTYSALTRPLCELSSLVP
Sbjct: 301 LRRIKPVPKLACHSVASWCHPRAPNLDILTCVKDSHIWSIEHPTYSALTRPLCELSSLVP 360
Query: 361 PQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPRSLPAVAPLPTPSGSRDHSA 420
PQVLA H+KLRVYCMVAH LQPHLVATGTNVG+I+SEFDPR++P+ APLP GSR++SA
Sbjct: 361 PQVLATHRKLRVYCMVAHPLQPHLVATGTNVGIIVSEFDPRAIPSAAPLPALPGSRENSA 420
Query: 421 VYIVERELKLVNFQLSSAANPSLGNNGSLSETGRLKGDLPDALQIKQIKKHISTPVPHDS 480
+YI+ RELKL+NFQLS+ ANPSLGNN +LSE+G KGD + L +KQ KK I PVPHDS
Sbjct: 421 IYILGRELKLLNFQLSNTANPSLGNNSALSESGLSKGDPGEQLTVKQTKKQIVAPVPHDS 480
Query: 481 YSILSVSSSGKYLAVVWPDIPYFSVYKVSDWSIVDSGSARLLAWDTCRDRFAILESALTP 540
YS+LSVSSSGKY+AVVWPDI YFS+YKVSDWSIVDSGSARLLAWDTCRDRFAILES L
Sbjct: 481 YSVLSVSSSGKYVAVVWPDILYFSIYKVSDWSIVDSGSARLLAWDTCRDRFAILESVLPH 540
Query: 541 RLPIIPKGGSSRKAKEXXXXXXXXXXXXXXXXXXXTVQARILLDDGTSNILMRSIGGSSE 600
R+PIIPKGGSSRKAKE +VQ RILLDDGTSNILMRS+GG SE
Sbjct: 541 RMPIIPKGGSSRKAKEAAAAAAQAAAAASAASSA-SVQVRILLDDGTSNILMRSVGGRSE 599
Query: 601 PVIGLHGGALLGVAYRTXXXXXXXXXXXXXXXQSMPXXXXXXXXXXXXXXXXXXXXXQKS 660
PVIGLHGGALLG+ YRT QSMP QKS
Sbjct: 600 PVIGLHGGALLGIGYRTSRRISPVAATAISTIQSMPLSGFGNSNVSSFSSYDDGFSSQKS 659
Query: 661 PAEAAPQNFQLYSWETFQPVGGLLPQPEWTAWDQTVEYCAFAYQHYIVISSLCPQYRYLG 720
AE+AP N+QLYSWE F+PVGG+LPQPEWTAWDQTVEYCAFAYQ Y+VISSL PQYRYLG
Sbjct: 660 -AESAPLNYQLYSWENFEPVGGMLPQPEWTAWDQTVEYCAFAYQQYMVISSLRPQYRYLG 718
Query: 721 DVAIPYATGAVWHRRQLFVVTPTTIECVFVDAGVAAIDVXXXXXXXXXXXXXVQSRAVAE 780
DVAI +ATGAVWHRRQLFV TPTTIECVFVDAGV+ ID+ Q+RAVAE
Sbjct: 719 DVAIAHATGAVWHRRQLFVATPTTIECVFVDAGVSEIDIETRKMKEEMKLKEAQARAVAE 778
Query: 781 HGELALIAVESSQTAAQDRIKLRPPMLQVVRLASFQHAASVPPFLTMPKQTKVEGDDSMM 840
HGELALI VE SQ A Q+RI LRPPMLQVVRLASFQ+A SVPPFL++P+Q++ + DD M
Sbjct: 779 HGELALITVEGSQAAKQERISLRPPMLQVVRLASFQNAPSVPPFLSLPRQSRGDSDDIM- 837
Query: 841 PKDIEERKVNEIXXXXXXXXXXXTRFPTEQKRPIGPLVVVGVKDGVLWLIDRYMCAHALS 900
+ER+VNE+ TRFP EQKRP+GPLVV GV+DGVLWLIDRYMCAHA+S
Sbjct: 838 ----DERRVNEVAVGGGGVSVAVTRFPVEQKRPVGPLVVAGVRDGVLWLIDRYMCAHAIS 893
Query: 901 LSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLAQFMLGMGYATEALHLPGISKRLEF 960
L+HPGIRCRCLAAYGD+VSAVKWASRLGREHHDDLAQFMLGMGYATEALHLPGISKRLEF
Sbjct: 894 LNHPGIRCRCLAAYGDAVSAVKWASRLGREHHDDLAQFMLGMGYATEALHLPGISKRLEF 953
Query: 961 DLAMQSNDLKRALQCLITMSNSRDIGQDHPGLDLNDILTLT-TKKENIVEAVQGIVKFAK 1019
DLAMQSNDLKRAL CL+TMSNS+DIGQD GLDL+DIL+LT TKKE++VEAV+GIVKFAK
Sbjct: 954 DLAMQSNDLKRALHCLLTMSNSKDIGQDGVGLDLSDILSLTATKKEDVVEAVEGIVKFAK 1013
Query: 1020 EFLDLIDAADATGQANIAREALKRLAAAGSVKGALQGHELRGLALRLANHGELTRLSGLV 1079
EFLDLIDAADATG A+IAREALKRLA AGSVKGALQGHELRGL+LRLANHGELTRLSGLV
Sbjct: 1014 EFLDLIDAADATGHADIAREALKRLATAGSVKGALQGHELRGLSLRLANHGELTRLSGLV 1073
Query: 1080 TNLISLGLGREAAFSAAILGDNALMEKAWQDTGMLAEAVLHAHAHGRPSLKNLVEAWNKM 1139
NLIS+GLGRE+AFSAA+LGDNALMEKAWQDTGMLAEAVLHAHAHGRP+LKNLV+AWNK
Sbjct: 1074 NNLISIGLGRESAFSAAVLGDNALMEKAWQDTGMLAEAVLHAHAHGRPTLKNLVQAWNKT 1133
Query: 1140 LQKEVDHXXXXXXXXXXXXXXSLEEPKLTSLAEAGKKPPIEILPPGMPSL-GSITIQKKP 1198
LQKEV+ SLE+PKLTSL++A +KPPIEILPPGM S+ SIT KKP
Sbjct: 1134 LQKEVEKAPSSKTDAASAFLASLEDPKLTSLSDASRKPPIEILPPGMSSIFASITAPKKP 1193
Query: 1199 VPGSLNSQQQPGKPLAVEGSQQQPGKPLAIEG--SQQQPSEQLAVE 1242
+ +Q + KPLA+E +P KPLAIE S + P + A E
Sbjct: 1194 LLTQKTAQPEVAKPLALE----EPTKPLAIEAPPSSEAPQTESAPE 1235
>POMBASE|SPBC16C6.13c [details] [associations]
symbol:sec27 "coatomer beta' subunit (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0003674
"molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0006886
"intracellular protein transport" evidence=IC] [GO:0006888 "ER to
Golgi vesicle-mediated transport" evidence=ISO] [GO:0006890
"retrograde vesicle-mediated transport, Golgi to ER" evidence=ISO]
[GO:0030126 "COPI vesicle coat" evidence=ISO] [GO:0032511 "late
endosome to vacuole transport via multivesicular body sorting
pathway" evidence=ISO] InterPro:IPR017986 InterPro:IPR001680
InterPro:IPR006692 InterPro:IPR015943 Pfam:PF00400 Pfam:PF04053
PROSITE:PS50082 PROSITE:PS50294 SMART:SM00320 PomBase:SPBC16C6.13c
GO:GO:0005829 GO:GO:0005634 GO:GO:0006886 Gene3D:2.130.10.10
SUPFAM:SSF50978 PROSITE:PS00678 GO:GO:0005198 EMBL:CU329671
eggNOG:COG2319 InterPro:IPR020472 PRINTS:PR00320
GenomeReviews:CU329671_GR GO:GO:0006888 GO:GO:0030126 GO:GO:0006890
HOGENOM:HOG000163444 InterPro:IPR016453 PIRSF:PIRSF005567
OMA:LRNKAFG PIR:T39962 RefSeq:XP_001713153.1
ProteinModelPortal:O42937 STRING:O42937 EnsemblFungi:SPBC16C6.13c.1
GeneID:2540050 KEGG:spo:SPBC16C6.13c OrthoDB:EOG48H0BF
NextBio:20801187 GO:GO:0032511 Uniprot:O42937
Length = 796
Score = 97 (39.2 bits), Expect = 2.6e-06, Sum P(3) = 2.6e-06
Identities = 34/114 (29%), Positives = 48/114 (42%)
Query: 182 PLVAFGSSDGVIRVLSM-ISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLI 240
P + S D I+ + +SWK V+ + G H + L + S DG +
Sbjct: 111 PFLLTSSDDMTIKCFNWDMSWKCVQTFEG-HSRYVMSLAINPKDTNT--FASSCLDGTVK 167
Query: 241 LWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWD 294
+WS G V +L+AHD GV V G P LIT G D + +WD
Sbjct: 168 VWS--FGSS----VANFTLQAHDRGVNYVNYYPA-GDKPYLITAGDDNLIKVWD 214
Score = 75 (31.5 bits), Expect = 2.6e-06, Sum P(3) = 2.6e-06
Identities = 8/35 (22%), Positives = 21/35 (60%)
Query: 12 DKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVI 46
+++ + HPT PW++ + + V +WN+ + ++
Sbjct: 15 ERVKAVDFHPTEPWVIASHYNGQVGIWNYNTQTLV 49
Score = 75 (31.5 bits), Expect = 2.6e-06, Sum P(3) = 2.6e-06
Identities = 26/92 (28%), Positives = 42/92 (45%)
Query: 883 KDGVLWLIDRYMCAHALSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLAQFMLGM 942
+D ++L DR M + S + I + L GD +A ++ L+ F+ +
Sbjct: 569 RDDRIYLTDRDMNVVSYSFNLAIIEYQSLVLKGDLEAAQGLLEQISETDRPRLSDFLSRL 628
Query: 943 GYATEALHLPGISKRLEFDLAMQSNDLKRALQ 974
GY AL L G S + F+LA+ + L A Q
Sbjct: 629 GYKEAALELSGDSVQ-RFELALDAQRLDIASQ 659
Score = 74 (31.1 bits), Expect = 0.00059, Sum P(3) = 0.00059
Identities = 34/133 (25%), Positives = 61/133 (45%)
Query: 182 PLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLIL 241
P++ GS DG +++ +S+ L++ Y + C+ A + + LV+ G D LI
Sbjct: 241 PIIISGSEDGTVKIWHTLSYSLIKSYNFSLDRAW-CI----AQNKDNGLVTVGFDNGLIT 295
Query: 242 WSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKEL 301
+S G+D P +++ + G VV + VM + +D T ++S KEL
Sbjct: 296 FSL--GRDE----PSVTMDS-SGKVVWSNYNEVMSAMIRPAKEQSDLTDGSLISLSVKEL 348
Query: 302 RRIKPVPKLACHS 314
+ P + HS
Sbjct: 349 GTTELYPAVLKHS 361
>FB|FBgn0025724 [details] [associations]
symbol:beta'Cop "beta'-coatomer protein" species:7227
"Drosophila melanogaster" [GO:0006890 "retrograde vesicle-mediated
transport, Golgi to ER" evidence=NAS] [GO:0030126 "COPI vesicle
coat" evidence=NAS] [GO:0048194 "Golgi vesicle budding"
evidence=NAS] [GO:0006888 "ER to Golgi vesicle-mediated transport"
evidence=NAS] [GO:0006886 "intracellular protein transport"
evidence=IEA] [GO:0005198 "structural molecule activity"
evidence=IEA] [GO:0016192 "vesicle-mediated transport"
evidence=IEA] [GO:0030117 "membrane coat" evidence=IEA] [GO:0010883
"regulation of lipid storage" evidence=IDA] [GO:0005795 "Golgi
stack" evidence=IDA] InterPro:IPR017986 InterPro:IPR001680
InterPro:IPR006692 InterPro:IPR015943 Pfam:PF00400 Pfam:PF04053
PROSITE:PS50082 PROSITE:PS50294 SMART:SM00320 GO:GO:0006886
EMBL:AE014134 Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678
GO:GO:0005198 eggNOG:COG2319 InterPro:IPR020472 PRINTS:PR00320
GO:GO:0006888 GO:GO:0030126 GO:GO:0010883 GO:GO:0006890
InterPro:IPR011044 SUPFAM:SSF50969 InterPro:IPR016453
PIRSF:PIRSF005567 GeneTree:ENSGT00640000091529 OMA:LRNKAFG
EMBL:AJ006523 EMBL:AJ006524 EMBL:BT023906 EMBL:AY119527
RefSeq:NP_524836.2 UniGene:Dm.2980 ProteinModelPortal:O62621
SMR:O62621 DIP:DIP-22262N MINT:MINT-1636818 STRING:O62621
PaxDb:O62621 PRIDE:O62621 EnsemblMetazoa:FBtr0080469 GeneID:45757
KEGG:dme:Dmel_CG6699 CTD:45757 FlyBase:FBgn0025724
InParanoid:O62621 OrthoDB:EOG4VHHN9 PhylomeDB:O62621
ChiTaRS:beta'Cop GenomeRNAi:45757 NextBio:838315 Bgee:O62621
GermOnline:CG6699 Uniprot:O62621
Length = 914
Score = 90 (36.7 bits), Expect = 4.1e-06, Sum P(5) = 4.1e-06
Identities = 35/124 (28%), Positives = 62/124 (50%)
Query: 929 REHHDDLAQFMLGMGYATEALHLPGISKRLEFDLAMQSNDLKRALQCLITMSNSRDIGQD 988
+EH +A F+ G+ ++AL + + +FDLA+Q DL+ AL+ NS+ Q
Sbjct: 617 KEHRTRVAHFLEKQGFKSQALQVSTDADH-KFDLALQIGDLEIALKLARESENSQKWSQ- 674
Query: 989 HPGLDLNDILTLTTKKENIVEAVQGIVKFAKEFLDLIDAADATGQANIAREALKRLAAAG 1048
L D+ + K N+ V+ ++ A + L+ + A+G A + L+ + AAG
Sbjct: 675 -----LADV---ASSKNNM-SLVKECMQKANDLSGLLLLSTASGDAQL----LEVVGAAG 721
Query: 1049 SVKG 1052
S +G
Sbjct: 722 SAQG 725
Score = 87 (35.7 bits), Expect = 4.1e-06, Sum P(5) = 4.1e-06
Identities = 14/47 (29%), Positives = 29/47 (61%)
Query: 11 NDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQR 57
+D++ + LHP PW++ A + HV + N+E++Q++ + + V R
Sbjct: 15 SDRVKCVDLHPAEPWMLCALYNGHVHIMNYENQQMVKDFEVCDVPVR 61
Score = 73 (30.8 bits), Expect = 0.00016, Sum P(5) = 0.00016
Identities = 12/39 (30%), Positives = 23/39 (58%)
Query: 3 RLKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWE 41
++ +F +D + I +HPT P ++T+ + +WNWE
Sbjct: 91 KVHSFEAHSDYLRCIAVHPTQPLVLTSSDDMLIKLWNWE 129
Score = 66 (28.3 bits), Expect = 4.1e-06, Sum P(5) = 4.1e-06
Identities = 37/160 (23%), Positives = 66/160 (41%)
Query: 182 PLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLIL 241
PLV S D +I++ + +R GH + ++ F S D + +
Sbjct: 112 PLVLTSSDDMLIKLWNWEKMWACQRVFEGHTHYVMQIV-FNPKDNNTF-ASASLDRTVKV 169
Query: 242 WSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKEL 301
W G + +L+ H+ GV V+ G P LI+ D+ + IWD ++
Sbjct: 170 WQL--GSN----FANFTLEGHEKGVNCVDYYHG-GDKPYLISGADDRLVKIWD---YQNK 219
Query: 302 RRIKPVPKLACHSVASWC-HPRAPNLDILTCVKDS--HIW 338
++ + A ++++ C HP P +LT +D IW
Sbjct: 220 TCVQTLEGHA-QNISAVCFHPELPI--VLTGSEDGTVRIW 256
Score = 63 (27.2 bits), Expect = 7.8e-06, Sum P(5) = 7.8e-06
Identities = 21/90 (23%), Positives = 44/90 (48%)
Query: 210 GHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAV 269
GH+ ++C+ + + L+SG D L+ +W D+ ++ V +L+ H + AV
Sbjct: 183 GHEKGVNCV-DYYHGGDKPYLISGADDRLVKIW--DY--QNKTCVQ--TLEGHAQNISAV 235
Query: 270 ELSRVMGGSPQLITIGADKTLAIWDTVSFK 299
+ P ++T D T+ IW + +++
Sbjct: 236 CFHPEL---PIVLTGSEDGTVRIWHSGTYR 262
Score = 51 (23.0 bits), Expect = 4.1e-06, Sum P(5) = 4.1e-06
Identities = 12/39 (30%), Positives = 18/39 (46%)
Query: 672 YSWETFQPVGGLLPQPEWTAWDQTVEY-CAFAYQHYIVI 709
Y WET Q V + QP+ W+++ C Y V+
Sbjct: 452 YDWETLQLVRRIEVQPKNVFWNESGSLVCLATDDSYFVL 490
Score = 51 (23.0 bits), Expect = 0.00010, Sum P(5) = 0.00010
Identities = 17/78 (21%), Positives = 37/78 (47%)
Query: 165 KSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMAS 224
K + C+++ GD P + G+ D ++++ + V+ G H +IS + F
Sbjct: 186 KGVNCVDYYHG---GDKPYLISGADDRLVKIWDYQNKTCVQTLEG-HAQNISAVC-FHPE 240
Query: 225 SGEALLVSGGSDGLLILW 242
++++G DG + +W
Sbjct: 241 L--PIVLTGSEDGTVRIW 256
Score = 47 (21.6 bits), Expect = 0.00024, Sum P(5) = 0.00024
Identities = 8/24 (33%), Positives = 16/24 (66%)
Query: 180 DVPLVAFGSSDGVIRVLSMISWKL 203
++P+V GS DG +R+ +++L
Sbjct: 240 ELPIVLTGSEDGTVRIWHSGTYRL 263
Score = 37 (18.1 bits), Expect = 4.1e-06, Sum P(5) = 4.1e-06
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 517 GSARLLAWDTCRDRFAILESALTPRL 542
GSA+ W + +AI E+ T RL
Sbjct: 391 GSAQEFVWALESNEYAIRENNGTVRL 416
>ASPGD|ASPL0000006005 [details] [associations]
symbol:AN5972 species:162425 "Emericella nidulans"
[GO:0030126 "COPI vesicle coat" evidence=IEA] [GO:0043130
"ubiquitin binding" evidence=IEA] [GO:0005198 "structural molecule
activity" evidence=IEA] [GO:0006886 "intracellular protein
transport" evidence=IEA] [GO:0032511 "late endosome to vacuole
transport via multivesicular body sorting pathway" evidence=IEA]
[GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA]
[GO:0006890 "retrograde vesicle-mediated transport, Golgi to ER"
evidence=IEA] InterPro:IPR017986 InterPro:IPR001680
InterPro:IPR006692 InterPro:IPR015943 Pfam:PF00400 Pfam:PF04053
PROSITE:PS50082 PROSITE:PS50294 SMART:SM00320 GO:GO:0006886
GO:GO:0030117 GO:GO:0016192 Gene3D:2.130.10.10 SUPFAM:SSF50978
GO:GO:0005198 InterPro:IPR020472 PRINTS:PR00320 EMBL:BN001301
InterPro:IPR011044 SUPFAM:SSF50969 HOGENOM:HOG000163444
InterPro:IPR016453 PIRSF:PIRSF005567 OMA:LRNKAFG
ProteinModelPortal:C8V3C4 EnsemblFungi:CADANIAT00007048
Uniprot:C8V3C4
Length = 853
Score = 90 (36.7 bits), Expect = 3.8e-05, Sum P(5) = 3.8e-05
Identities = 15/41 (36%), Positives = 27/41 (65%)
Query: 11 NDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVI--YEL 49
++++ I HPT PW++T S HV +W++E + +I +EL
Sbjct: 13 SERVKGIDFHPTEPWILTTLYSGHVYIWSYETQSIIKTFEL 53
Score = 89 (36.4 bits), Expect = 3.8e-05, Sum P(5) = 3.8e-05
Identities = 26/101 (25%), Positives = 53/101 (52%)
Query: 876 PLVVVGV--KDGVLWLIDRYMCAHALSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHD 933
P+ V+G +DG +++ D+ + A + +LS + + + GD A + + ++ +
Sbjct: 560 PMYVLGYLPRDGRVYVADKDVNAVSFALSLSMVEYQTVVLRGDMELAAELLQDIPQDQMN 619
Query: 934 DLAQFMLGMGYATEALHLPGISKRLEFDLAMQSNDLKRALQ 974
+A+F+ G GY AL + + F+LA+ N+L AL+
Sbjct: 620 KVARFLEGQGYKELALEV-ATDQEHRFELALALNNLDIALE 659
Score = 64 (27.6 bits), Expect = 3.8e-05, Sum P(5) = 3.8e-05
Identities = 40/148 (27%), Positives = 58/148 (39%)
Query: 182 PLVAFGSSDGVIRVLSMIS-WKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLI 240
P V S D I++ WK V+ Y G H + L + S D +
Sbjct: 110 PFVLTASDDMTIKLWDWEKGWKCVQVYEG-HSHYVMGLAINPKDTNT--FASACLDRTVK 166
Query: 241 LWSADHGQDSRELVPKLSLKAHDG-GVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFK 299
+WS G +L+AH+ GV V+ P L+T DKT+ +WD + K
Sbjct: 167 IWSL--GSPHANF----TLEAHETKGVNHVDYYP-QADKPYLLTTSDDKTVKVWDYTT-K 218
Query: 300 ELRRIKPVPKLACHS--VASWC-HPRAP 324
L + L H+ V+ C HP P
Sbjct: 219 AL-----IATLEGHTSNVSFACYHPELP 241
Score = 51 (23.0 bits), Expect = 0.00061, Sum P(5) = 0.00061
Identities = 15/62 (24%), Positives = 32/62 (51%)
Query: 180 DVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLL 239
++P++ GS DG I++ +++L + + G + + C+ G AL G DG +
Sbjct: 239 ELPVIISGSEDGTIKIWHANTYRLEQSLSYGLERAW-CVSYQRGKQGVAL---GFDDGAV 294
Query: 240 IL 241
++
Sbjct: 295 VV 296
Score = 38 (18.4 bits), Expect = 3.8e-05, Sum P(5) = 3.8e-05
Identities = 8/10 (80%), Positives = 8/10 (80%)
Query: 604 GLHGGALLGV 613
GL GG LLGV
Sbjct: 433 GLTGGVLLGV 442
Score = 38 (18.4 bits), Expect = 3.8e-05, Sum P(5) = 3.8e-05
Identities = 8/32 (25%), Positives = 14/32 (43%)
Query: 671 LYSWETFQPVGGLLPQPEWTAWDQTVEYCAFA 702
++ WET V + +P W ++ E A
Sbjct: 450 MFDWETGNLVRRIEVEPRNVYWSESGELVTLA 481
>UNIPROTKB|F1S845 [details] [associations]
symbol:TAF5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0046983 "protein dimerization activity" evidence=IEA]
[GO:0044212 "transcription regulatory region DNA binding"
evidence=IEA] [GO:0033276 "transcription factor TFTC complex"
evidence=IEA] [GO:0015629 "actin cytoskeleton" evidence=IEA]
[GO:0006367 "transcription initiation from RNA polymerase II
promoter" evidence=IEA] [GO:0005669 "transcription factor TFIID
complex" evidence=IEA] [GO:0004402 "histone acetyltransferase
activity" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] InterPro:IPR017986
InterPro:IPR001680 InterPro:IPR007582 InterPro:IPR015943
Pfam:PF00400 Pfam:PF04494 PROSITE:PS50082 PROSITE:PS50294
SMART:SM00320 Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678
InterPro:IPR019775 GO:GO:0015629 InterPro:IPR020472 PRINTS:PR00320
GO:GO:0003700 GO:GO:0044212 GO:GO:0006367 GO:GO:0004402
GO:GO:0005669 GO:GO:0033276 GeneTree:ENSGT00700000104377
OMA:ERQNNQI ProteinModelPortal:F1S845 Ensembl:ENSSSCT00000011591
Uniprot:F1S845
Length = 542
Score = 135 (52.6 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 41/120 (34%), Positives = 63/120 (52%)
Query: 184 VAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWS 243
VA GS+D +R+ +++ VR +TG HKG I L TF S L +G +DG ++LW
Sbjct: 402 VATGSADRTVRLWDVLNGNCVRIFTG-HKGPIHSL-TF--SPNGRFLATGATDGRVLLWD 457
Query: 244 ADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGA-DKTLAIWDTV-SFKEL 301
HG EL K H V ++ SR +++ G+ D T+ +WD V +F++L
Sbjct: 458 IGHGLMVGEL------KGHTDTVCSLRFSR----DGEILASGSMDNTVRLWDAVKAFEDL 507
>UNIPROTKB|I3LC69 [details] [associations]
symbol:WDR81 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0010923 "negative regulation of phosphatase activity"
evidence=IEA] InterPro:IPR017986 InterPro:IPR001680
InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294
SMART:SM00320 Gene3D:2.130.10.10 SUPFAM:SSF50978 GO:GO:0010923
GeneTree:ENSGT00390000003969 Ensembl:ENSSSCT00000029533 OMA:FILETIT
Uniprot:I3LC69
Length = 647
Score = 110 (43.8 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 32/109 (29%), Positives = 50/109 (45%)
Query: 200 SWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSA-DHGQDSRELVPKLS 258
+W + GH G+I C++ S E +SG D + LW + G +RE P+L
Sbjct: 359 NWLAYWQXFPGHSGAIKCVVPL---SSEDFFLSGSKDRTVRLWPLYNSGDGTRETAPRLV 415
Query: 259 LKAHDGGVVAV-ELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKP 306
H V V +L +PQ + + D + IWD + K LR ++P
Sbjct: 416 YTQHRKSVFFVGQLE-----APQCV-VSCDGAVHIWDPFTGKTLRTVEP 458
Score = 72 (30.4 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 35/123 (28%), Positives = 56/123 (45%)
Query: 392 GVIISEFDPRSLPAVAPLPTPS---GSRDHSAVYIVERELKLVN-FQLSSAANPSLGNNG 447
G + +P ++ AV P P S S D + ++ R+ L + F+LS NP L +
Sbjct: 450 GKTLRTVEPTAV-AVMPAPYTSITMASSDSTLRFVDCRKPGLQHEFRLSGGLNPGLVRSL 508
Query: 448 SLSETGRLKGD--------LP-DALQIKQIKKHISTPVPHDSYS-ILSVSSSGKYLAVVW 497
++S +GR G+ LP DAL +P+P + L VSSS + VW
Sbjct: 509 AVSPSGRSXGNQGAELTLLLPGDALMSNPCPYLPCSPLPGQAVEGSLLVSSSSDHSLTVW 568
Query: 498 PDI 500
++
Sbjct: 569 KEL 571
>ZFIN|ZDB-GENE-051120-180 [details] [associations]
symbol:taf5 "TAF5 RNA polymerase II, TATA box
binding protein (TBP)-associated factor" species:7955 "Danio rerio"
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR017986 InterPro:IPR001680 InterPro:IPR006594
InterPro:IPR007582 InterPro:IPR015943 Pfam:PF00400 Pfam:PF04494
PROSITE:PS50082 PROSITE:PS50294 PROSITE:PS50896 SMART:SM00320
SMART:SM00667 ZFIN:ZDB-GENE-051120-180 GO:GO:0005634 GO:GO:0006355
Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678
InterPro:IPR019775 eggNOG:COG2319 InterPro:IPR020472 PRINTS:PR00320
GeneTree:ENSGT00700000104377 HOVERGEN:HBG050226 OMA:ERQNNQI
OrthoDB:EOG469QW7 HOGENOM:HOG000212424 EMBL:CR812943
IPI:IPI00656497 UniGene:Dr.78627 ProteinModelPortal:B8JIQ0
Ensembl:ENSDART00000015007 ArrayExpress:B8JIQ0 Bgee:B8JIQ0
Uniprot:B8JIQ0
Length = 756
Score = 142 (55.0 bits), Expect = 0.00027, Sum P(2) = 0.00027
Identities = 40/114 (35%), Positives = 61/114 (53%)
Query: 184 VAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWS 243
VA GSSD +R+ +++ VR +TG HKG I L + +G+ L SG +DG ++LW
Sbjct: 598 VATGSSDRTVRLWDVLNGNCVRIFTG-HKGPIHSLA--FSPNGK-FLASGSTDGRVLLWD 653
Query: 244 ADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGA-DKTLAIWDTV 296
HG EL K H G + A++ SR ++I G+ D T+ +WD +
Sbjct: 654 IGHGLMIAEL------KGHTGTIYALKFSR----DGEIIASGSIDNTVRLWDVM 697
Score = 37 (18.1 bits), Expect = 0.00027, Sum P(2) = 0.00027
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 158 PKQELDNKSLVCMEFLSRSAVGD 180
PK E L ++FL RS + +
Sbjct: 65 PKPEDQQTLLAVLQFLKRSKLAE 87
>SGD|S000003105 [details] [associations]
symbol:SEC27 "Essential beta'-coat protein of the COPI
coatomer" species:4932 "Saccharomyces cerevisiae" [GO:0000139
"Golgi membrane" evidence=IEA] [GO:0032511 "late endosome to
vacuole transport via multivesicular body sorting pathway"
evidence=IMP;IPI] [GO:0030663 "COPI-coated vesicle membrane"
evidence=IEA] [GO:0005794 "Golgi apparatus" evidence=IEA]
[GO:0006810 "transport" evidence=IEA] [GO:0016020 "membrane"
evidence=IEA] [GO:0031410 "cytoplasmic vesicle" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0015031 "protein
transport" evidence=IEA] [GO:0016192 "vesicle-mediated transport"
evidence=IEA] [GO:0043130 "ubiquitin binding" evidence=IDA]
[GO:0030126 "COPI vesicle coat" evidence=IGI;ISS] [GO:0006888 "ER
to Golgi vesicle-mediated transport" evidence=IMP] [GO:0006890
"retrograde vesicle-mediated transport, Golgi to ER" evidence=IMP]
[GO:0005198 "structural molecule activity" evidence=IEA]
[GO:0006886 "intracellular protein transport" evidence=IEA]
[GO:0030117 "membrane coat" evidence=IEA] InterPro:IPR017986
InterPro:IPR001680 InterPro:IPR006692 InterPro:IPR015943
Pfam:PF00400 Pfam:PF04053 PROSITE:PS50082 PROSITE:PS50294
SMART:SM00320 SGD:S000003105 GO:GO:0006886 Gene3D:2.130.10.10
SUPFAM:SSF50978 PROSITE:PS00678 InterPro:IPR019775 EMBL:BK006941
GO:GO:0005198 eggNOG:COG2319 InterPro:IPR020472 PRINTS:PR00320
GO:GO:0006888 GO:GO:0030126 GO:GO:0006890 GO:GO:0043130
HOGENOM:HOG000163444 InterPro:IPR016453 PIRSF:PIRSF005567
GeneTree:ENSGT00640000091529 OMA:LRNKAFG OrthoDB:EOG48H0BF
GO:GO:0032511 EMBL:U11237 EMBL:X92670 EMBL:Z72659 PIR:B55123
RefSeq:NP_011378.1 PDB:2YNN PDB:2YNO PDB:2YNP PDBsum:2YNN
PDBsum:2YNO PDBsum:2YNP ProteinModelPortal:P41811 SMR:P41811
DIP:DIP-6468N IntAct:P41811 MINT:MINT-428887 STRING:P41811
PaxDb:P41811 PeptideAtlas:P41811 EnsemblFungi:YGL137W GeneID:852740
KEGG:sce:YGL137W CYGD:YGL137w NextBio:972153 Genevestigator:P41811
GermOnline:YGL137W Uniprot:P41811
Length = 889
Score = 90 (36.7 bits), Expect = 0.00047, Sum P(3) = 0.00047
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 5 KAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWE 41
K F +D++ I HPT PW++T S V +WN+E
Sbjct: 7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYE 43
Score = 74 (31.1 bits), Expect = 0.00047, Sum P(3) = 0.00047
Identities = 31/115 (26%), Positives = 51/115 (44%)
Query: 182 PLVAFGSSDGVIRVLSMIS-WKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLI 240
P V GS D +++ + + W L + + G H+ + C+ F + SG D +
Sbjct: 110 PYVLSGSDDLTVKLWNWENNWALEQTFEG-HEHFVMCV-AFNPKD-PSTFASGCLDRTVK 166
Query: 241 LWSADHGQDSRELVPKLSLKA-HDGGVVAVELSRVMGGSPQLITIGADKTLAIWD 294
+WS GQ + P +L + GV V+ + P +IT D T+ IWD
Sbjct: 167 VWSL--GQST----PNFTLTTGQERGVNYVDYYP-LPDKPYMITASDDLTIKIWD 214
Score = 62 (26.9 bits), Expect = 0.00047, Sum P(3) = 0.00047
Identities = 22/96 (22%), Positives = 46/96 (47%)
Query: 883 KDGVLWLIDRYMCAHALSLSHPGIRCRCLAAYGDSVSAVK--WASRLGREHHDDLAQFML 940
+D ++L DR + + +S + + L G+ A++ + G++ +A+F+
Sbjct: 581 RDNKVYLADREVHVYGYEISLEVLEFQTLTLRGEIEEAIENVLPNVEGKDSLTKIARFLE 640
Query: 941 GMGYATEALHLPGISKRLEFDLAMQSNDLKRALQCL 976
G Y EAL++ + +F+LA++ L A L
Sbjct: 641 GQEYYEEALNISPDQDQ-KFELALKVGQLTLARDLL 675
>TAIR|locus:2012971 [details] [associations]
symbol:AT1G71840 "AT1G71840" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0005834 "heterotrimeric
G-protein complex" evidence=ISS] [GO:0008150 "biological_process"
evidence=ND] [GO:0005829 "cytosol" evidence=IDA] InterPro:IPR017986
InterPro:IPR001680 InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082
PROSITE:PS50294 SMART:SM00320 EMBL:CP002684 GO:GO:0005829
Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678
InterPro:IPR019775 HOGENOM:HOG000261676 OMA:VWSFEVG HSSP:P16649
EMBL:AY080732 EMBL:BT001964 IPI:IPI00538190 RefSeq:NP_177329.2
UniGene:At.44000 ProteinModelPortal:Q8RXQ4 SMR:Q8RXQ4 IntAct:Q8RXQ4
PRIDE:Q8RXQ4 EnsemblPlants:AT1G71840.1 GeneID:843514
KEGG:ath:AT1G71840 TAIR:At1g71840 InParanoid:Q8RXQ4
PhylomeDB:Q8RXQ4 ProtClustDB:CLSN2680639 ArrayExpress:Q8RXQ4
Genevestigator:Q8RXQ4 Uniprot:Q8RXQ4
Length = 407
Score = 122 (48.0 bits), Expect = 0.00064, P = 0.00064
Identities = 36/132 (27%), Positives = 65/132 (49%)
Query: 165 KSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMAS 224
+ L C++ S S+ L GS DG + ++++++ K+V H S+ C+ +S
Sbjct: 243 EGLTCLDINSNSS-----LAISGSKDGSVHIVNIVTGKVVSSLNS-HTDSVECVKFSPSS 296
Query: 225 SGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITI 284
+ L +GG D LI+W H P+ + H+ GV ++ +G S L T
Sbjct: 297 ATIPLAATGGMDKKLIIWDLQHS------TPRFICE-HEEGVTSLTW---IGTSKYLATG 346
Query: 285 GADKTLAIWDTV 296
A+ T++IWD++
Sbjct: 347 CANGTVSIWDSL 358
>UNIPROTKB|E1BVN5 [details] [associations]
symbol:PLRG1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
InterPro:IPR017986 InterPro:IPR001680 InterPro:IPR015943
Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294 SMART:SM00320
Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678
InterPro:IPR019775 InterPro:IPR020472 PRINTS:PR00320 GO:GO:0071013
CTD:5356 GeneTree:ENSGT00700000104496 KO:K12862 OMA:ITAEADK
EMBL:AADN02016546 IPI:IPI00576149 RefSeq:XP_420368.2
UniGene:Gga.9982 ProteinModelPortal:E1BVN5
Ensembl:ENSGALT00000015067 GeneID:422401 KEGG:gga:422401
NextBio:20825038 Uniprot:E1BVN5
Length = 516
Score = 122 (48.0 bits), Expect = 0.00092, P = 0.00092
Identities = 56/205 (27%), Positives = 83/205 (40%)
Query: 201 WKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLK 260
WKL R GH G + C+ G V+G +D + +W G+ KLSL
Sbjct: 196 WKLYR-VISGHLGWVRCIAV---EPGNQWFVTGSADRTIKIWDLASGK------LKLSLT 245
Query: 261 AHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCH 320
H V V +S SP L + G DK + WD K +R H A +
Sbjct: 246 GHISTVRGVIVS---ARSPYLFSCGEDKQVKCWDLEYNKVIRHYHG------HLSAVYGL 296
Query: 321 PRAPNLDIL-TCVKDS--HIWAIEHP----TYSALTRPLCELS-SLVPPQVL--AHHKKL 370
P +D+L TC +DS IW + T S T + + PQV+ +H +
Sbjct: 297 DLHPTIDVLVTCSRDSTARIWDVRTKASVHTLSGHTNAVATVKCQAAEPQVVTGSHDTTI 356
Query: 371 RVYCMVAHSLQPHLVATGTNVGVII 395
R++ +VA + L +V +I
Sbjct: 357 RLWDLVAGKTRVTLTNHKKSVRAVI 381
>UNIPROTKB|Q9BRP4 [details] [associations]
symbol:PAAF1 "Proteasomal ATPase-associated factor 1"
species:9606 "Homo sapiens" [GO:0000502 "proteasome complex"
evidence=IEA] [GO:0019048 "virus-host interaction" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] InterPro:IPR017986
InterPro:IPR001680 InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082
PROSITE:PS50294 SMART:SM00320 GO:GO:0019048 Gene3D:2.130.10.10
SUPFAM:SSF50978 PROSITE:PS00678 InterPro:IPR019775 eggNOG:COG2319
InterPro:IPR020472 PRINTS:PR00320 EMBL:CH471076 GO:GO:0000502
EMBL:AP002770 CTD:80227 HOVERGEN:HBG056033 KO:K11887 OMA:HPPGKPS
OrthoDB:EOG41VK31 EMBL:AF087895 EMBL:AK021910 EMBL:AK222501
EMBL:AK298258 EMBL:AK316394 EMBL:BC006142 EMBL:BC021541
EMBL:BC028628 IPI:IPI00743862 IPI:IPI00867542 IPI:IPI01009790
RefSeq:NP_001254732.1 RefSeq:NP_001254733.1 RefSeq:NP_001254734.1
RefSeq:NP_001254735.1 RefSeq:NP_079431.1 UniGene:Hs.525017
ProteinModelPortal:Q9BRP4 SMR:Q9BRP4 IntAct:Q9BRP4 STRING:Q9BRP4
PhosphoSite:Q9BRP4 DMDM:97217547 PaxDb:Q9BRP4 PRIDE:Q9BRP4
DNASU:80227 Ensembl:ENST00000310571 Ensembl:ENST00000376384
Ensembl:ENST00000535604 Ensembl:ENST00000536003
Ensembl:ENST00000544552 GeneID:80227 KEGG:hsa:80227 UCSC:uc001ouk.1
UCSC:uc001oul.1 GeneCards:GC11P073588 H-InvDB:HIX0009924
HGNC:HGNC:25687 HPA:HPA039952 neXtProt:NX_Q9BRP4
PharmGKB:PA162398551 InParanoid:Q9BRP4 PhylomeDB:Q9BRP4
GenomeRNAi:80227 NextBio:70653 ArrayExpress:Q9BRP4 Bgee:Q9BRP4
CleanEx:HS_PAAF1 Genevestigator:Q9BRP4 GermOnline:ENSG00000175575
Uniprot:Q9BRP4
Length = 392
Score = 120 (47.3 bits), Expect = 0.00099, P = 0.00099
Identities = 37/133 (27%), Positives = 65/133 (48%)
Query: 162 LDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTF 221
+ KS+ C++ SR +G S+DG +++ + +L RR GH ++C F
Sbjct: 90 IHTKSITCLDISSRGGLG-----VSSSTDGTMKIWQASNGEL-RRVLEGHVFDVNCCRFF 143
Query: 222 MASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQL 281
SG +L SGG D L +WSA+ D+ +V + K H GG++ + ++ +
Sbjct: 144 --PSGLVVL-SGGMDAQLKIWSAE---DASCVV---TFKGHKGGILD---TAIVDRGRNV 191
Query: 282 ITIGADKTLAIWD 294
++ D T +WD
Sbjct: 192 VSASRDGTARLWD 204
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.133 0.400 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 1331 1176 0.00095 123 3 11 22 0.41 34
38 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 11
No. of states in DFA: 636 (68 KB)
Total size of DFA: 537 KB (2243 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 94.05u 0.11s 94.16t Elapsed: 00:00:05
Total cpu time: 94.05u 0.11s 94.16t Elapsed: 00:00:05
Start: Tue May 21 03:10:21 2013 End: Tue May 21 03:10:26 2013