Query 000722
Match_columns 1331
No_of_seqs 802 out of 4085
Neff 7.1
Searched_HMMs 46136
Date Mon Apr 1 22:33:26 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000722.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000722hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0276 Vesicle coat complex C 100.0 6E-118 1E-122 1018.7 30.8 767 4-1145 6-781 (794)
2 KOG0292 Vesicle coat complex C 100.0 5E-110 1E-114 979.3 38.4 766 4-1183 2-809 (1202)
3 PF04053 Coatomer_WDAD: Coatom 100.0 7.2E-72 1.6E-76 666.1 11.2 396 483-1126 37-443 (443)
4 KOG0271 Notchless-like WD40 re 100.0 8.7E-40 1.9E-44 359.2 16.8 326 6-399 110-479 (480)
5 KOG0286 G-protein beta subunit 100.0 1.4E-33 3E-38 302.5 18.4 287 4-399 48-343 (343)
6 KOG0271 Notchless-like WD40 re 100.0 4.9E-34 1.1E-38 314.0 10.7 286 4-338 150-478 (480)
7 KOG0272 U4/U6 small nuclear ri 100.0 9.5E-33 2.1E-37 308.2 16.1 280 9-399 173-458 (459)
8 KOG0292 Vesicle coat complex C 100.0 4.2E-29 9.2E-34 296.8 35.4 415 4-536 44-509 (1202)
9 KOG0272 U4/U6 small nuclear ri 100.0 1.5E-31 3.2E-36 298.7 11.1 244 3-339 209-458 (459)
10 KOG0291 WD40-repeat-containing 100.0 2.9E-29 6.2E-34 295.4 24.9 433 3-513 137-616 (893)
11 KOG0319 WD40-repeat-containing 100.0 5.6E-30 1.2E-34 301.9 16.9 353 4-399 97-617 (775)
12 KOG0318 WD40 repeat stress pro 100.0 9.3E-29 2E-33 282.0 26.3 295 4-341 52-390 (603)
13 KOG0295 WD40 repeat-containing 100.0 5.5E-30 1.2E-34 281.8 13.8 290 4-401 101-406 (406)
14 KOG0276 Vesicle coat complex C 100.0 6.8E-28 1.5E-32 278.6 30.4 241 120-403 13-259 (794)
15 KOG0315 G-protein beta subunit 100.0 2.8E-29 6.1E-34 264.0 17.2 279 24-405 11-292 (311)
16 KOG0285 Pleiotropic regulator 100.0 1.4E-28 3.1E-33 269.1 18.4 294 4-402 144-440 (460)
17 KOG0645 WD40 repeat protein [G 100.0 3.7E-28 8E-33 258.8 20.4 296 3-401 6-311 (312)
18 KOG0279 G protein beta subunit 100.0 2.5E-28 5.4E-33 261.1 19.1 297 2-401 6-313 (315)
19 KOG0284 Polyadenylation factor 100.0 2E-28 4.4E-33 272.4 14.9 278 11-400 96-379 (464)
20 KOG0263 Transcription initiati 100.0 2.1E-28 4.5E-33 292.3 15.0 315 9-388 376-703 (707)
21 KOG0318 WD40 repeat stress pro 100.0 8.1E-27 1.7E-31 266.3 25.2 451 16-535 23-506 (603)
22 KOG0279 G protein beta subunit 99.9 2.8E-27 6.1E-32 253.1 15.7 251 4-341 56-313 (315)
23 cd00200 WD40 WD40 domain, foun 99.9 2.9E-26 6.4E-31 255.1 21.1 284 4-399 2-289 (289)
24 KOG0291 WD40-repeat-containing 99.9 2.9E-26 6.2E-31 270.3 21.3 342 7-403 261-614 (893)
25 KOG0281 Beta-TrCP (transducin 99.9 1.4E-26 3E-31 252.1 15.5 282 10-407 196-483 (499)
26 KOG0296 Angio-associated migra 99.9 9E-27 1.9E-31 256.8 13.5 335 3-400 56-397 (399)
27 KOG0273 Beta-transducin family 99.9 3.9E-26 8.5E-31 258.1 18.1 296 5-403 173-484 (524)
28 KOG0266 WD40 repeat-containing 99.9 5.9E-26 1.3E-30 277.4 20.4 288 6-401 153-454 (456)
29 KOG0263 Transcription initiati 99.9 1.5E-26 3.2E-31 276.6 14.3 208 4-299 444-652 (707)
30 KOG0265 U5 snRNP-specific prot 99.9 2.3E-25 5E-30 240.5 17.6 283 5-394 41-332 (338)
31 KOG0282 mRNA splicing factor [ 99.9 5.2E-26 1.1E-30 258.4 13.1 287 4-399 207-503 (503)
32 KOG0273 Beta-transducin family 99.9 1E-25 2.2E-30 254.9 14.7 279 11-401 235-523 (524)
33 KOG0319 WD40-repeat-containing 99.9 4.1E-26 8.8E-31 269.5 11.4 288 4-339 316-617 (775)
34 PLN00181 protein SPA1-RELATED; 99.9 7.4E-25 1.6E-29 285.9 23.1 312 5-400 477-792 (793)
35 KOG0286 G-protein beta subunit 99.9 1.1E-24 2.3E-29 234.5 17.9 244 113-401 49-303 (343)
36 KOG0295 WD40 repeat-containing 99.9 1.5E-25 3.2E-30 247.0 10.7 245 4-339 143-404 (406)
37 KOG0275 Conserved WD40 repeat- 99.9 1.7E-25 3.7E-30 241.4 10.7 294 9-399 211-507 (508)
38 KOG0293 WD40 repeat-containing 99.9 8.4E-25 1.8E-29 243.4 16.4 291 4-401 217-513 (519)
39 KOG0281 Beta-TrCP (transducin 99.9 1.9E-25 4.1E-30 243.4 10.4 243 4-343 230-479 (499)
40 KOG0284 Polyadenylation factor 99.9 2.1E-25 4.5E-30 248.6 10.9 239 119-401 95-337 (464)
41 KOG0285 Pleiotropic regulator 99.9 8.6E-25 1.9E-29 239.6 14.0 249 114-409 146-397 (460)
42 KOG0306 WD40-repeat-containing 99.9 6.8E-24 1.5E-28 250.3 21.3 247 119-407 372-628 (888)
43 KOG0316 Conserved WD40 repeat- 99.9 2.4E-24 5.2E-29 225.3 13.3 281 3-339 9-297 (307)
44 KOG0315 G-protein beta subunit 99.9 6.5E-24 1.4E-28 223.8 16.5 268 6-377 35-308 (311)
45 KOG0313 Microtubule binding pr 99.9 2.6E-24 5.6E-29 238.3 11.4 284 9-341 103-416 (423)
46 KOG0306 WD40-repeat-containing 99.9 2.1E-23 4.5E-28 246.3 17.6 283 5-401 367-664 (888)
47 KOG0296 Angio-associated migra 99.9 7.5E-23 1.6E-27 226.0 14.3 286 4-340 99-397 (399)
48 KOG0265 U5 snRNP-specific prot 99.9 1E-22 2.2E-27 220.2 14.4 252 117-407 44-302 (338)
49 KOG0266 WD40 repeat-containing 99.9 1.8E-22 3.9E-27 246.8 18.3 242 4-339 196-452 (456)
50 PLN00181 protein SPA1-RELATED; 99.9 3.4E-22 7.4E-27 261.0 21.6 274 92-401 455-738 (793)
51 KOG0293 WD40 repeat-containing 99.9 3.2E-23 6.9E-28 230.9 9.6 251 4-297 262-514 (519)
52 KOG0282 mRNA splicing factor [ 99.9 1.4E-22 3E-27 230.7 12.4 246 4-339 251-503 (503)
53 KOG2106 Uncharacterized conser 99.9 3.3E-21 7.2E-26 219.3 23.5 335 3-400 96-476 (626)
54 KOG0772 Uncharacterized conser 99.9 7.8E-22 1.7E-26 224.9 17.5 301 5-401 161-488 (641)
55 KOG0645 WD40 repeat protein [G 99.9 9.9E-22 2.1E-26 210.0 16.8 240 114-401 9-261 (312)
56 KOG0275 Conserved WD40 repeat- 99.9 2.8E-22 6.1E-27 216.6 11.3 247 120-402 213-468 (508)
57 cd00200 WD40 WD40 domain, foun 99.9 2.4E-21 5.1E-26 215.6 19.0 237 120-401 9-249 (289)
58 KOG0643 Translation initiation 99.9 4.2E-22 9E-27 212.1 11.5 286 5-337 4-311 (327)
59 KOG0300 WD40 repeat-containing 99.9 1.6E-21 3.4E-26 210.6 15.7 329 4-401 141-476 (481)
60 KOG0640 mRNA cleavage stimulat 99.9 1E-21 2.2E-26 212.1 14.0 312 6-401 107-426 (430)
61 KOG0301 Phospholipase A2-activ 99.9 2.1E-21 4.5E-26 228.5 17.1 277 5-402 8-289 (745)
62 KOG0274 Cdc4 and related F-box 99.9 2.3E-21 5E-26 237.4 17.8 280 7-408 203-489 (537)
63 KOG0278 Serine/threonine kinas 99.9 9.6E-22 2.1E-26 207.3 12.2 281 6-342 9-298 (334)
64 KOG0274 Cdc4 and related F-box 99.9 8.8E-22 1.9E-26 241.1 13.8 242 7-304 245-490 (537)
65 KOG2048 WD40 repeat protein [G 99.9 1.9E-20 4E-25 220.5 23.9 456 4-537 18-539 (691)
66 KOG0283 WD40 repeat-containing 99.9 3E-21 6.5E-26 233.3 16.6 306 5-342 260-577 (712)
67 KOG0277 Peroxisomal targeting 99.9 3.6E-21 7.7E-26 203.9 14.5 242 122-400 62-308 (311)
68 KOG0313 Microtubule binding pr 99.9 1.2E-21 2.5E-26 217.4 11.3 262 93-401 123-418 (423)
69 KOG0288 WD40 repeat protein Ti 99.8 2.8E-21 6.1E-26 216.2 11.5 284 5-398 169-458 (459)
70 KOG0641 WD40 repeat protein [G 99.8 2.9E-20 6.3E-25 193.1 17.9 309 10-400 31-348 (350)
71 KOG2096 WD40 repeat protein [G 99.8 3.9E-20 8.5E-25 200.8 19.4 297 2-393 77-396 (420)
72 KOG0316 Conserved WD40 repeat- 99.8 7.6E-21 1.7E-25 199.2 13.1 243 120-409 17-265 (307)
73 KOG0973 Histone transcription 99.8 7.7E-21 1.7E-25 234.6 15.1 305 7-402 8-356 (942)
74 KOG0268 Sof1-like rRNA process 99.8 1.6E-21 3.5E-26 214.9 8.2 275 4-342 59-346 (433)
75 KOG3617 WD40 and TPR repeat-co 99.8 3.8E-19 8.2E-24 210.8 26.2 291 799-1160 679-1033(1416)
76 KOG0310 Conserved WD40 repeat- 99.8 1.2E-20 2.7E-25 215.4 12.9 275 11-395 26-304 (487)
77 KOG0310 Conserved WD40 repeat- 99.8 7.6E-21 1.6E-25 217.1 11.2 240 4-337 61-303 (487)
78 KOG0305 Anaphase promoting com 99.8 4E-20 8.7E-25 219.1 17.5 236 121-402 218-462 (484)
79 KOG1408 WD40 repeat protein [F 99.8 2.4E-19 5.3E-24 209.8 22.1 433 6-515 73-632 (1080)
80 KOG1407 WD40 repeat protein [F 99.8 1.2E-20 2.5E-25 200.8 10.2 275 4-330 13-288 (313)
81 KOG0308 Conserved WD40 repeat- 99.8 2.5E-20 5.4E-25 218.0 13.6 201 118-341 71-283 (735)
82 KOG1539 WD repeat protein [Gen 99.8 1.2E-19 2.5E-24 217.4 19.5 334 4-401 195-606 (910)
83 KOG0299 U3 snoRNP-associated p 99.8 1.4E-19 3E-24 205.4 18.7 306 4-394 135-450 (479)
84 KOG0277 Peroxisomal targeting 99.8 5.7E-20 1.2E-24 194.8 12.7 239 11-339 60-307 (311)
85 KOG0283 WD40 repeat-containing 99.8 1.3E-19 2.9E-24 219.2 17.3 209 162-405 265-536 (712)
86 KOG1063 RNA polymerase II elon 99.8 5.4E-20 1.2E-24 216.5 13.5 365 3-402 183-649 (764)
87 PTZ00421 coronin; Provisional 99.8 2.1E-19 4.5E-24 219.9 19.1 256 10-343 19-292 (493)
88 KOG0264 Nucleosome remodeling 99.8 1.1E-19 2.3E-24 206.8 15.2 261 119-402 123-405 (422)
89 KOG1063 RNA polymerase II elon 99.8 3.7E-19 8.1E-24 209.6 19.7 348 4-401 47-437 (764)
90 PTZ00421 coronin; Provisional 99.8 2.2E-19 4.8E-24 219.6 18.3 207 158-404 69-293 (493)
91 PTZ00420 coronin; Provisional 99.8 1.6E-19 3.6E-24 221.9 16.6 242 4-326 67-318 (568)
92 KOG1332 Vesicle coat complex C 99.8 7.7E-20 1.7E-24 192.9 11.6 264 1-341 1-286 (299)
93 KOG0289 mRNA splicing factor [ 99.8 2.7E-19 5.9E-24 201.2 16.6 282 12-399 220-504 (506)
94 KOG0973 Histone transcription 99.8 3.7E-19 8E-24 219.9 17.3 255 113-401 6-312 (942)
95 KOG1446 Histone H3 (Lys4) meth 99.8 2.5E-18 5.4E-23 188.4 20.9 287 4-400 7-302 (311)
96 KOG0308 Conserved WD40 repeat- 99.8 1.9E-19 4E-24 210.7 12.8 242 126-402 30-286 (735)
97 KOG2055 WD40 repeat protein [G 99.8 1E-18 2.3E-23 198.1 17.2 289 11-401 213-512 (514)
98 KOG0640 mRNA cleavage stimulat 99.8 1.3E-19 2.8E-24 196.0 9.3 255 4-340 165-425 (430)
99 KOG0278 Serine/threonine kinas 99.8 1.6E-19 3.6E-24 190.5 9.6 247 4-300 52-301 (334)
100 KOG1408 WD40 repeat protein [F 99.8 6.7E-19 1.5E-23 206.2 15.4 351 12-401 261-713 (1080)
101 KOG0647 mRNA export protein (c 99.8 9.6E-19 2.1E-23 189.7 15.3 271 9-385 25-309 (347)
102 KOG0289 mRNA splicing factor [ 99.8 7.1E-19 1.5E-23 197.9 14.8 243 4-335 254-498 (506)
103 KOG0650 WD40 repeat nucleolar 99.8 8.4E-19 1.8E-23 203.3 15.1 304 6-337 395-729 (733)
104 KOG0643 Translation initiation 99.8 7.6E-19 1.6E-23 187.5 12.9 256 119-398 9-314 (327)
105 KOG0639 Transducin-like enhanc 99.8 5.1E-19 1.1E-23 200.9 12.3 282 8-398 416-701 (705)
106 KOG0264 Nucleosome remodeling 99.8 1.3E-18 2.8E-23 198.0 14.9 265 7-342 120-405 (422)
107 KOG0300 WD40 repeat-containing 99.8 1.1E-18 2.3E-23 188.9 13.4 209 156-402 140-387 (481)
108 KOG1539 WD repeat protein [Gen 99.8 3.2E-18 6.9E-23 205.2 18.7 402 8-537 156-638 (910)
109 KOG1524 WD40 repeat-containing 99.8 2.2E-16 4.8E-21 181.0 32.4 204 135-395 77-281 (737)
110 KOG0299 U3 snoRNP-associated p 99.8 1.6E-18 3.4E-23 196.9 14.9 254 117-402 139-411 (479)
111 KOG1332 Vesicle coat complex C 99.8 1.9E-18 4.1E-23 182.5 14.0 254 119-400 10-285 (299)
112 KOG0305 Anaphase promoting com 99.8 1.3E-18 2.9E-23 206.3 14.4 239 11-342 217-462 (484)
113 KOG1407 WD40 repeat protein [F 99.8 1.1E-18 2.3E-23 185.9 11.8 234 6-287 59-293 (313)
114 KOG0269 WD40 repeat-containing 99.8 1.1E-18 2.3E-23 207.9 10.6 237 122-394 89-334 (839)
115 KOG1036 Mitotic spindle checkp 99.8 3.6E-18 7.8E-23 186.2 12.6 260 10-332 12-292 (323)
116 KOG0646 WD40 repeat protein [G 99.8 5.8E-18 1.3E-22 192.7 14.3 229 163-410 80-316 (476)
117 PTZ00420 coronin; Provisional 99.8 5.4E-18 1.2E-22 208.6 15.2 221 140-402 51-294 (568)
118 KOG0641 WD40 repeat protein [G 99.8 2.9E-17 6.2E-22 170.9 18.0 256 4-341 82-349 (350)
119 KOG0288 WD40 repeat protein Ti 99.7 2.7E-18 5.9E-23 192.5 9.1 243 4-338 212-458 (459)
120 KOG0301 Phospholipase A2-activ 99.7 2.3E-17 5E-22 194.8 16.6 236 115-401 10-249 (745)
121 KOG0267 Microtubule severing p 99.7 1.2E-18 2.6E-23 205.9 5.8 189 120-335 70-259 (825)
122 KOG0307 Vesicle coat complex C 99.7 3.9E-16 8.3E-21 194.0 27.4 211 164-407 64-290 (1049)
123 KOG0294 WD40 repeat-containing 99.7 2E-17 4.2E-22 180.5 12.6 244 4-299 36-284 (362)
124 KOG4328 WD40 protein [Function 99.7 5.8E-17 1.2E-21 184.0 16.8 301 4-400 179-494 (498)
125 KOG0269 WD40 repeat-containing 99.7 1.1E-17 2.3E-22 199.5 10.9 196 120-337 133-334 (839)
126 KOG2445 Nuclear pore complex c 99.7 1.3E-16 2.8E-21 173.5 18.2 232 160-401 55-318 (361)
127 KOG0647 mRNA export protein (c 99.7 5.7E-17 1.2E-21 176.0 15.2 271 118-428 25-307 (347)
128 KOG0267 Microtubule severing p 99.7 6.5E-18 1.4E-22 199.8 8.4 245 94-393 13-261 (825)
129 KOG0294 WD40 repeat-containing 99.7 3.9E-17 8.3E-22 178.2 13.5 217 157-402 36-282 (362)
130 KOG1538 Uncharacterized conser 99.7 3.9E-15 8.4E-20 173.8 29.9 247 3-297 45-294 (1081)
131 KOG1036 Mitotic spindle checkp 99.7 2.2E-16 4.8E-21 172.4 18.6 250 119-406 12-267 (323)
132 KOG0772 Uncharacterized conser 99.7 4.4E-17 9.5E-22 186.5 12.9 252 10-337 213-481 (641)
133 KOG0639 Transducin-like enhanc 99.7 3.1E-16 6.8E-21 178.5 18.9 239 120-400 419-662 (705)
134 KOG0302 Ribosome Assembly prot 99.7 1.1E-16 2.5E-21 177.8 14.8 268 7-339 147-436 (440)
135 KOG1274 WD40 repeat protein [G 99.7 3.2E-16 7E-21 190.3 19.9 267 8-382 10-283 (933)
136 KOG0268 Sof1-like rRNA process 99.7 1.1E-16 2.4E-21 177.0 13.6 238 115-402 62-303 (433)
137 KOG0302 Ribosome Assembly prot 99.7 1.9E-16 4.2E-21 176.0 14.2 246 135-399 167-436 (440)
138 TIGR03866 PQQ_ABC_repeats PQQ- 99.7 8E-16 1.7E-20 175.9 19.0 276 23-407 1-285 (300)
139 KOG4283 Transcription-coupled 99.7 3E-16 6.4E-21 169.4 13.9 311 6-400 38-364 (397)
140 KOG0646 WD40 repeat protein [G 99.7 1.6E-16 3.5E-21 181.1 12.3 229 11-324 81-329 (476)
141 KOG1446 Histone H3 (Lys4) meth 99.7 6.5E-16 1.4E-20 169.6 16.5 246 120-408 14-269 (311)
142 KOG1538 Uncharacterized conser 99.7 1.3E-14 2.9E-19 169.3 27.2 280 5-401 8-293 (1081)
143 KOG0321 WD40 repeat-containing 99.7 1.2E-15 2.6E-20 178.9 17.7 251 120-401 100-391 (720)
144 KOG2048 WD40 repeat protein [G 99.7 2.7E-15 5.9E-20 177.4 20.4 272 93-402 45-320 (691)
145 KOG2919 Guanine nucleotide-bin 99.7 4.2E-16 9.1E-21 170.3 12.5 288 13-341 51-367 (406)
146 KOG2106 Uncharacterized conser 99.6 2.5E-15 5.4E-20 172.0 17.7 354 5-400 239-625 (626)
147 KOG1007 WD repeat protein TSSC 99.6 2.1E-15 4.7E-20 162.6 15.6 227 122-395 125-356 (370)
148 KOG4378 Nuclear protein COP1 [ 99.6 8.4E-16 1.8E-20 175.0 12.2 245 93-380 55-304 (673)
149 TIGR03866 PQQ_ABC_repeats PQQ- 99.6 1.2E-15 2.7E-20 174.4 13.3 251 5-304 25-287 (300)
150 KOG0307 Vesicle coat complex C 99.6 6.5E-16 1.4E-20 192.1 10.8 246 121-402 65-328 (1049)
151 KOG1517 Guanine nucleotide bin 99.6 6.2E-15 1.3E-19 180.1 18.2 303 7-401 1060-1381(1387)
152 KOG1273 WD40 repeat protein [G 99.6 6.7E-15 1.4E-19 160.4 16.1 278 167-535 26-312 (405)
153 KOG1445 Tumor-specific antigen 99.6 2E-14 4.4E-19 167.1 20.6 150 265-434 629-785 (1012)
154 KOG1034 Transcriptional repres 99.6 4.6E-15 1E-19 162.8 14.4 302 5-341 32-381 (385)
155 KOG0270 WD40 repeat-containing 99.6 4.1E-15 8.9E-20 168.8 14.1 236 134-405 193-453 (463)
156 KOG0321 WD40 repeat-containing 99.6 5.8E-15 1.2E-19 173.3 15.3 255 3-343 92-393 (720)
157 KOG1274 WD40 repeat protein [G 99.6 5.6E-15 1.2E-19 179.7 15.8 243 120-402 13-263 (933)
158 KOG1273 WD40 repeat protein [G 99.6 8.6E-15 1.9E-19 159.6 15.0 287 14-404 26-325 (405)
159 KOG2055 WD40 repeat protein [G 99.6 2.8E-14 6E-19 162.5 18.6 237 120-390 213-455 (514)
160 KOG4378 Nuclear protein COP1 [ 99.6 8.2E-15 1.8E-19 167.1 14.0 268 94-405 11-284 (673)
161 KOG4283 Transcription-coupled 99.6 2E-14 4.3E-19 155.4 16.2 213 117-343 40-278 (397)
162 KOG2096 WD40 repeat protein [G 99.6 2.8E-14 6E-19 155.8 16.8 225 97-342 63-309 (420)
163 KOG0270 WD40 repeat-containing 99.6 2.8E-14 6.1E-19 162.1 17.2 208 164-401 173-404 (463)
164 KOG0650 WD40 repeat nucleolar 99.6 6.2E-15 1.3E-19 171.6 10.1 290 52-398 398-732 (733)
165 KOG2445 Nuclear pore complex c 99.5 2E-14 4.4E-19 156.7 12.0 222 159-402 8-257 (361)
166 KOG1034 Transcriptional repres 99.5 1E-13 2.2E-18 152.4 16.6 264 120-403 38-339 (385)
167 KOG0290 Conserved WD40 repeat- 99.5 4.8E-13 1E-17 144.9 20.0 254 123-405 47-322 (364)
168 KOG4328 WD40 protein [Function 99.5 8.9E-14 1.9E-18 158.4 12.6 259 119-407 185-456 (498)
169 KOG1963 WD40 repeat protein [G 99.5 1.7E-12 3.7E-17 158.5 22.7 373 3-402 49-488 (792)
170 KOG0303 Actin-binding protein 99.5 2.5E-13 5.3E-18 152.2 12.6 212 156-405 73-298 (472)
171 KOG0644 Uncharacterized conser 99.5 6.5E-14 1.4E-18 167.8 8.3 276 4-401 183-468 (1113)
172 KOG0322 G-protein beta subunit 99.5 4.7E-14 1E-18 151.0 6.1 288 5-340 8-322 (323)
173 KOG1188 WD40 repeat protein [G 99.4 6.9E-13 1.5E-17 146.8 14.3 286 24-400 41-345 (376)
174 COG2319 FOG: WD40 repeat [Gene 99.4 3.4E-12 7.4E-17 148.9 20.4 292 6-404 60-362 (466)
175 KOG1334 WD40 repeat protein [G 99.4 4.9E-13 1.1E-17 153.3 12.3 300 4-341 135-466 (559)
176 KOG1240 Protein kinase contain 99.4 5.5E-13 1.2E-17 165.9 13.0 359 4-399 1041-1431(1431)
177 KOG0644 Uncharacterized conser 99.4 2.9E-13 6.2E-18 162.4 8.9 221 156-403 182-428 (1113)
178 KOG4227 WD40 repeat protein [G 99.4 7.6E-13 1.7E-17 147.2 10.8 326 4-404 49-390 (609)
179 KOG1007 WD repeat protein TSSC 99.4 2.9E-12 6.2E-17 138.8 14.8 214 9-296 121-361 (370)
180 KOG1587 Cytoplasmic dynein int 99.4 6.9E-12 1.5E-16 153.5 18.0 232 144-402 224-473 (555)
181 KOG2041 WD40 repeat protein [G 99.4 9.9E-10 2.1E-14 130.2 33.5 224 885-1145 692-925 (1189)
182 KOG2919 Guanine nucleotide-bin 99.4 1.2E-12 2.6E-17 143.6 8.3 238 13-289 106-363 (406)
183 KOG1310 WD40 repeat protein [G 99.4 4E-12 8.7E-17 146.9 12.6 183 159-401 45-231 (758)
184 KOG1009 Chromatin assembly com 99.3 1.7E-11 3.8E-16 138.4 17.0 162 120-299 13-198 (434)
185 KOG0290 Conserved WD40 repeat- 99.3 9.2E-12 2E-16 135.1 13.8 202 120-335 150-357 (364)
186 KOG1188 WD40 repeat protein [G 99.3 4E-12 8.7E-17 140.8 11.1 262 4-341 63-346 (376)
187 KOG0642 Cell-cycle nuclear pro 99.3 1E-12 2.3E-17 153.3 6.4 257 6-303 289-568 (577)
188 KOG4497 Uncharacterized conser 99.3 4.5E-12 9.8E-17 139.1 9.7 350 126-535 14-380 (447)
189 COG2319 FOG: WD40 repeat [Gene 99.3 6.6E-11 1.4E-15 138.1 20.0 236 122-402 157-401 (466)
190 KOG0642 Cell-cycle nuclear pro 99.3 5.5E-12 1.2E-16 147.4 10.5 130 159-300 289-430 (577)
191 KOG0649 WD40 repeat protein [G 99.3 1.7E-11 3.6E-16 130.1 13.1 198 123-343 13-237 (325)
192 KOG1272 WD40-repeat-containing 99.3 7.1E-12 1.5E-16 143.2 10.9 270 14-393 132-402 (545)
193 KOG1310 WD40 repeat protein [G 99.3 2.4E-11 5.1E-16 140.7 14.8 174 4-296 43-231 (758)
194 KOG1587 Cytoplasmic dynein int 99.3 2.7E-11 5.8E-16 148.3 14.1 255 11-297 242-517 (555)
195 KOG4227 WD40 repeat protein [G 99.3 1.3E-10 2.8E-15 129.8 17.1 254 120-401 56-322 (609)
196 KOG1009 Chromatin assembly com 99.2 2.1E-11 4.5E-16 137.8 10.3 168 12-247 14-197 (434)
197 KOG0303 Actin-binding protein 99.2 2.4E-11 5.2E-16 136.5 9.8 216 6-299 76-297 (472)
198 KOG4497 Uncharacterized conser 99.2 2.3E-11 5E-16 133.6 9.1 310 16-401 13-391 (447)
199 KOG1963 WD40 repeat protein [G 99.2 8.1E-11 1.7E-15 144.1 14.7 296 9-342 203-539 (792)
200 PRK11028 6-phosphogluconolacto 99.2 3.7E-10 8.1E-15 132.9 18.3 249 124-401 38-304 (330)
201 KOG0322 G-protein beta subunit 99.2 8.7E-11 1.9E-15 126.3 10.9 246 120-400 14-322 (323)
202 KOG0771 Prolactin regulatory e 99.2 8.3E-11 1.8E-15 134.1 11.4 198 15-297 148-355 (398)
203 KOG0649 WD40 repeat protein [G 99.2 1.5E-10 3.2E-15 123.1 12.4 212 166-409 12-243 (325)
204 KOG1445 Tumor-specific antigen 99.2 8.7E-11 1.9E-15 137.4 11.0 226 142-402 602-845 (1012)
205 PRK01742 tolB translocation pr 99.1 4E-10 8.6E-15 137.6 15.2 218 5-325 197-426 (429)
206 KOG1517 Guanine nucleotide bin 99.1 8.6E-10 1.9E-14 136.1 16.9 248 123-402 1067-1334(1387)
207 KOG2394 WD40 protein DMR-N9 [G 99.1 6.4E-10 1.4E-14 129.3 13.4 228 124-379 127-384 (636)
208 KOG1523 Actin-related protein 99.1 7.8E-10 1.7E-14 122.1 12.8 204 120-338 10-231 (361)
209 PRK11028 6-phosphogluconolacto 99.1 3.4E-09 7.3E-14 124.8 17.7 201 125-341 84-304 (330)
210 KOG1523 Actin-related protein 99.0 3.5E-09 7.5E-14 117.0 13.2 218 164-401 10-236 (361)
211 KOG0771 Prolactin regulatory e 99.0 1.2E-09 2.6E-14 124.8 9.6 192 124-335 148-346 (398)
212 KOG2139 WD40 repeat protein [G 99.0 9E-09 2E-13 115.1 16.2 192 122-335 142-366 (445)
213 PRK01742 tolB translocation pr 99.0 1.1E-09 2.4E-14 133.7 9.7 233 94-379 183-425 (429)
214 KOG2321 WD40 repeat protein [G 99.0 7.9E-09 1.7E-13 121.1 15.8 271 9-336 49-336 (703)
215 KOG2110 Uncharacterized conser 98.9 5.3E-09 1.2E-13 117.6 12.8 235 123-404 8-251 (391)
216 KOG1334 WD40 repeat protein [G 98.9 3.5E-09 7.6E-14 122.2 11.5 270 118-402 140-425 (559)
217 KOG0974 WD-repeat protein WDR6 98.9 2.1E-09 4.6E-14 133.8 10.4 192 179-403 97-290 (967)
218 KOG1064 RAVE (regulator of V-A 98.9 1.6E-09 3.5E-14 139.3 9.1 198 7-305 2204-2407(2439)
219 KOG2110 Uncharacterized conser 98.9 2.5E-08 5.5E-13 112.3 17.3 159 122-299 89-251 (391)
220 KOG1524 WD40 repeat-containing 98.9 2.1E-09 4.6E-14 124.6 8.0 187 5-294 98-284 (737)
221 KOG1240 Protein kinase contain 98.9 3.4E-08 7.4E-13 124.3 18.7 262 120-401 1048-1334(1431)
222 KOG2111 Uncharacterized conser 98.9 2.6E-08 5.7E-13 110.3 15.0 245 13-299 7-259 (346)
223 KOG2139 WD40 repeat protein [G 98.9 1.3E-08 2.8E-13 113.9 12.3 194 120-342 98-310 (445)
224 KOG1272 WD40-repeat-containing 98.9 1.9E-09 4E-14 123.7 5.8 225 124-399 133-360 (545)
225 KOG3881 Uncharacterized conser 98.8 1.2E-08 2.5E-13 115.6 11.2 163 126-303 154-327 (412)
226 PRK03629 tolB translocation pr 98.8 3.1E-08 6.8E-13 121.0 15.9 170 125-325 247-428 (429)
227 KOG1409 Uncharacterized conser 98.8 9.7E-09 2.1E-13 114.4 9.6 82 156-245 189-270 (404)
228 KOG2394 WD40 protein DMR-N9 [G 98.8 5.3E-09 1.2E-13 121.8 7.4 138 164-324 219-384 (636)
229 PRK04922 tolB translocation pr 98.8 8.8E-08 1.9E-12 117.3 15.6 169 125-324 252-432 (433)
230 KOG2321 WD40 repeat protein [G 98.7 1E-07 2.2E-12 112.1 13.5 240 120-394 51-337 (703)
231 PF08662 eIF2A: Eukaryotic tra 98.7 9.1E-08 2E-12 104.2 11.8 153 126-303 11-185 (194)
232 KOG0974 WD-repeat protein WDR6 98.7 4.6E-08 1E-12 122.1 10.3 147 128-297 141-289 (967)
233 KOG4547 WD40 repeat-containing 98.7 1.8E-07 3.8E-12 111.3 14.2 216 20-297 2-221 (541)
234 PRK02889 tolB translocation pr 98.7 2.4E-07 5.1E-12 113.3 15.8 222 5-325 189-425 (427)
235 PRK05137 tolB translocation pr 98.7 3.4E-07 7.3E-12 112.3 16.8 204 4-299 194-415 (435)
236 KOG2111 Uncharacterized conser 98.6 6.1E-07 1.3E-11 99.7 16.0 236 124-403 9-258 (346)
237 KOG1354 Serine/threonine prote 98.6 3.2E-07 6.9E-12 102.4 13.3 310 11-400 25-358 (433)
238 PF02239 Cytochrom_D1: Cytochr 98.6 2.5E-08 5.3E-13 119.0 4.8 293 5-342 30-348 (369)
239 PRK03629 tolB translocation pr 98.6 2.1E-07 4.4E-12 113.9 12.0 203 96-335 180-395 (429)
240 KOG2041 WD40 repeat protein [G 98.6 7.5E-06 1.6E-10 98.2 24.2 114 264-395 15-140 (1189)
241 KOG3881 Uncharacterized conser 98.5 4E-07 8.6E-12 103.4 10.7 119 124-251 206-326 (412)
242 PRK04922 tolB translocation pr 98.5 4.7E-07 1E-11 110.9 12.3 199 95-330 184-394 (433)
243 TIGR02800 propeller_TolB tol-p 98.5 1.8E-06 4E-11 104.9 15.5 192 5-288 183-386 (417)
244 KOG4190 Uncharacterized conser 98.5 1.8E-07 3.9E-12 108.5 5.9 249 2-294 726-986 (1034)
245 PRK02889 tolB translocation pr 98.4 3E-06 6.4E-11 103.7 15.6 180 120-330 195-386 (427)
246 PRK05137 tolB translocation pr 98.3 6E-06 1.3E-10 101.3 15.8 155 146-330 186-349 (435)
247 KOG4547 WD40 repeat-containing 98.3 2.1E-06 4.5E-11 102.4 11.1 193 179-401 3-220 (541)
248 KOG0280 Uncharacterized conser 98.3 3.7E-06 8.1E-11 92.6 12.1 200 166-399 123-331 (339)
249 KOG1912 WD40 repeat protein [G 98.3 1.4E-06 3E-11 105.5 9.0 254 124-403 234-553 (1062)
250 PRK04792 tolB translocation pr 98.3 6.6E-06 1.4E-10 101.2 15.2 169 125-324 266-446 (448)
251 KOG3617 WD40 and TPR repeat-co 98.3 0.00026 5.7E-09 86.8 27.9 166 927-1144 706-872 (1416)
252 KOG1409 Uncharacterized conser 98.3 7.4E-06 1.6E-10 91.9 13.8 204 120-342 24-271 (404)
253 PRK00178 tolB translocation pr 98.3 9.7E-06 2.1E-10 99.3 16.3 169 125-324 247-427 (430)
254 PF08662 eIF2A: Eukaryotic tra 98.3 2E-06 4.4E-11 93.6 8.9 116 192-330 38-159 (194)
255 KOG3914 WD repeat protein WDR4 98.3 3.1E-06 6.7E-11 97.0 10.5 164 123-304 65-231 (390)
256 PF02239 Cytochrom_D1: Cytochr 98.3 1.3E-06 2.9E-11 104.3 8.0 318 25-405 8-351 (369)
257 KOG3914 WD repeat protein WDR4 98.3 2E-06 4.3E-11 98.5 8.6 116 128-252 115-230 (390)
258 KOG1064 RAVE (regulator of V-A 98.3 1.1E-06 2.4E-11 114.2 7.0 196 162-410 2206-2407(2439)
259 KOG4714 Nucleoporin [Nuclear s 98.3 7.4E-06 1.6E-10 88.9 12.2 198 180-399 100-316 (319)
260 KOG2695 WD40 repeat protein [G 98.3 1.8E-06 3.9E-11 96.6 7.8 153 136-305 228-385 (425)
261 KOG0280 Uncharacterized conser 98.2 2.1E-06 4.5E-11 94.6 7.8 183 124-322 125-309 (339)
262 KOG0309 Conserved WD40 repeat- 98.2 8.4E-07 1.8E-11 106.6 5.2 260 120-402 24-340 (1081)
263 KOG1354 Serine/threonine prote 98.2 4E-06 8.6E-11 93.9 9.7 222 164-401 25-301 (433)
264 KOG1832 HIV-1 Vpr-binding prot 98.2 8.1E-07 1.8E-11 108.2 4.5 206 156-411 1093-1301(1516)
265 COG2706 3-carboxymuconate cycl 98.2 1.5E-05 3.3E-10 90.6 14.3 256 121-401 40-321 (346)
266 KOG2315 Predicted translation 98.2 5.8E-05 1.3E-09 89.7 17.9 321 11-402 34-391 (566)
267 KOG1832 HIV-1 Vpr-binding prot 98.1 4.6E-06 1E-10 101.9 7.2 219 3-329 1093-1316(1516)
268 KOG2314 Translation initiation 98.1 6.6E-05 1.4E-09 88.7 15.8 103 223-341 218-334 (698)
269 KOG0309 Conserved WD40 repeat- 98.1 1.5E-05 3.3E-10 96.2 10.7 297 12-343 25-341 (1081)
270 TIGR03300 assembly_YfgL outer 98.1 2.1E-05 4.5E-10 94.6 12.1 136 181-340 241-376 (377)
271 KOG4714 Nucleoporin [Nuclear s 98.1 1.2E-05 2.7E-10 87.2 8.8 147 135-294 152-316 (319)
272 TIGR02800 propeller_TolB tol-p 98.0 3.5E-05 7.5E-10 93.8 13.7 179 120-329 189-379 (417)
273 PRK01029 tolB translocation pr 98.0 6.8E-05 1.5E-09 91.7 16.1 157 125-300 235-407 (428)
274 KOG1912 WD40 repeat protein [G 98.0 7.4E-05 1.6E-09 91.1 15.5 161 123-296 18-186 (1062)
275 COG2706 3-carboxymuconate cycl 98.0 0.00083 1.8E-08 76.9 23.1 183 141-342 15-222 (346)
276 PF04762 IKI3: IKI3 family; I 98.0 0.00032 6.9E-09 92.9 22.5 116 166-298 211-335 (928)
277 KOG2315 Predicted translation 98.0 0.00013 2.9E-09 86.7 16.9 303 123-535 37-373 (566)
278 PF00400 WD40: WD domain, G-be 98.0 7.3E-06 1.6E-10 64.6 4.0 36 4-39 4-39 (39)
279 TIGR02658 TTQ_MADH_Hv methylam 98.0 4E-05 8.6E-10 90.2 11.9 233 19-304 53-338 (352)
280 PF10282 Lactonase: Lactonase, 98.0 6.9E-05 1.5E-09 89.2 13.7 249 125-400 41-321 (345)
281 PRK00178 tolB translocation pr 97.9 8.5E-05 1.8E-09 91.0 14.5 180 120-330 198-389 (430)
282 COG5354 Uncharacterized protei 97.9 0.0002 4.4E-09 84.3 15.6 185 120-330 32-238 (561)
283 PRK04792 tolB translocation pr 97.9 0.0001 2.2E-09 90.8 14.1 179 120-329 217-407 (448)
284 PF10282 Lactonase: Lactonase, 97.9 0.00055 1.2E-08 81.5 19.8 235 143-400 14-274 (345)
285 PRK01029 tolB translocation pr 97.9 9.3E-05 2E-09 90.6 12.6 181 122-329 186-385 (428)
286 TIGR03300 assembly_YfgL outer 97.8 0.00015 3.2E-09 87.2 13.1 230 23-303 65-304 (377)
287 COG5170 CDC55 Serine/threonine 97.8 6.9E-05 1.5E-09 83.0 8.5 222 164-401 26-309 (460)
288 PLN02919 haloacid dehalogenase 97.7 0.00045 9.7E-09 93.1 17.6 208 124-343 627-890 (1057)
289 COG4946 Uncharacterized protei 97.7 0.0038 8.1E-08 73.1 22.2 168 131-329 331-503 (668)
290 COG5354 Uncharacterized protei 97.7 0.00033 7.1E-09 82.6 13.6 291 10-342 31-349 (561)
291 KOG2695 WD40 repeat protein [G 97.7 6E-05 1.3E-09 84.8 6.5 144 120-273 252-402 (425)
292 COG5170 CDC55 Serine/threonine 97.7 8.7E-05 1.9E-09 82.2 7.3 210 120-343 26-311 (460)
293 COG4946 Uncharacterized protei 97.7 0.004 8.7E-08 72.9 20.8 189 177-402 274-478 (668)
294 TIGR02658 TTQ_MADH_Hv methylam 97.6 0.0025 5.3E-08 75.4 19.3 247 128-408 53-337 (352)
295 KOG1275 PAB-dependent poly(A) 97.6 0.00015 3.3E-09 90.0 9.4 140 133-296 148-296 (1118)
296 PLN02919 haloacid dehalogenase 97.6 0.00062 1.3E-08 91.8 15.7 165 125-300 687-892 (1057)
297 KOG2314 Translation initiation 97.6 0.0018 3.9E-08 77.0 17.0 140 167-331 213-363 (698)
298 KOG4190 Uncharacterized conser 97.6 6.4E-05 1.4E-09 88.0 4.9 197 94-307 701-917 (1034)
299 PF00400 WD40: WD domain, G-be 97.6 0.00011 2.4E-09 57.8 4.7 37 255-294 3-39 (39)
300 KOG4532 WD40-like repeat conta 97.5 0.0017 3.7E-08 71.3 14.5 151 167-327 161-315 (344)
301 KOG1920 IkappaB kinase complex 97.5 0.0002 4.4E-09 91.7 8.4 169 904-1129 883-1057(1265)
302 KOG1008 Uncharacterized conser 97.5 5.5E-05 1.2E-09 90.9 2.5 214 164-403 56-277 (783)
303 KOG4532 WD40-like repeat conta 97.4 0.0012 2.5E-08 72.5 12.0 191 135-343 86-284 (344)
304 PF04762 IKI3: IKI3 family; I 97.4 0.0084 1.8E-07 79.7 22.2 268 11-298 120-458 (928)
305 PF15492 Nbas_N: Neuroblastoma 97.3 0.0053 1.1E-07 68.6 15.2 224 126-403 3-261 (282)
306 PRK11138 outer membrane biogen 97.2 0.0012 2.6E-08 80.0 10.7 137 181-341 256-392 (394)
307 KOG0882 Cyclophilin-related pe 97.1 0.0019 4.1E-08 75.2 9.7 175 123-307 56-242 (558)
308 PF08450 SGL: SMP-30/Gluconola 97.1 0.0056 1.2E-07 69.1 13.1 175 130-327 50-238 (246)
309 PF15492 Nbas_N: Neuroblastoma 96.9 0.018 3.8E-07 64.6 15.1 40 262-304 228-267 (282)
310 KOG2066 Vacuolar assembly/sort 96.9 0.0062 1.3E-07 75.7 12.6 187 121-341 40-233 (846)
311 PF07433 DUF1513: Protein of u 96.9 0.011 2.5E-07 67.7 14.0 242 12-342 5-284 (305)
312 KOG1920 IkappaB kinase complex 96.9 0.055 1.2E-06 70.4 20.4 116 168-299 199-325 (1265)
313 KOG2066 Vacuolar assembly/sort 96.9 0.0072 1.6E-07 75.2 12.1 184 12-245 40-233 (846)
314 KOG1645 RING-finger-containing 96.8 0.033 7.2E-07 64.6 15.8 94 193-299 175-269 (463)
315 PRK11138 outer membrane biogen 96.7 0.02 4.4E-07 69.4 14.8 138 182-341 206-351 (394)
316 PF04053 Coatomer_WDAD: Coatom 96.7 0.0003 6.6E-09 85.7 -1.4 97 1025-1135 325-424 (443)
317 KOG1645 RING-finger-containing 96.7 0.0038 8.3E-08 72.1 7.4 49 5-53 187-236 (463)
318 KOG0882 Cyclophilin-related pe 96.6 0.0061 1.3E-07 71.2 8.4 223 162-409 7-239 (558)
319 PRK04043 tolB translocation pr 96.4 0.02 4.4E-07 69.9 12.0 175 122-329 189-382 (419)
320 PF13360 PQQ_2: PQQ-like domai 96.4 0.023 5E-07 63.2 11.5 149 135-301 39-196 (238)
321 PF13360 PQQ_2: PQQ-like domai 96.4 0.019 4.2E-07 63.8 10.7 107 180-301 121-235 (238)
322 KOG1275 PAB-dependent poly(A) 96.3 0.038 8.3E-07 69.7 13.6 144 131-294 186-340 (1118)
323 smart00320 WD40 WD40 repeats. 96.3 0.0045 9.7E-08 46.0 3.7 36 4-39 5-40 (40)
324 PF08450 SGL: SMP-30/Gluconola 96.3 0.023 5.1E-07 64.1 10.9 189 127-341 6-211 (246)
325 PRK04043 tolB translocation pr 96.3 0.061 1.3E-06 65.8 15.2 145 126-296 238-400 (419)
326 PF11768 DUF3312: Protein of u 96.2 0.022 4.8E-07 69.4 10.5 74 210-297 257-330 (545)
327 KOG2114 Vacuolar assembly/sort 96.2 0.024 5.1E-07 71.2 10.8 206 13-247 27-245 (933)
328 KOG2114 Vacuolar assembly/sort 96.1 0.072 1.6E-06 67.1 14.6 199 178-404 32-246 (933)
329 KOG3621 WD40 repeat-containing 96.0 0.023 5E-07 70.1 9.6 118 166-297 37-155 (726)
330 PRK02888 nitrous-oxide reducta 95.9 0.14 3E-06 64.1 15.6 99 191-297 296-405 (635)
331 KOG1008 Uncharacterized conser 95.8 0.0075 1.6E-07 73.2 4.2 207 11-246 56-276 (783)
332 PF07433 DUF1513: Protein of u 95.6 0.27 5.8E-06 56.8 15.6 204 123-344 7-250 (305)
333 KOG3616 Selective LIM binding 95.6 0.038 8.2E-07 67.7 8.8 152 942-1132 435-591 (1636)
334 PF11768 DUF3312: Protein of u 95.3 0.028 6E-07 68.6 6.3 74 163-247 258-331 (545)
335 KOG3621 WD40 repeat-containing 95.1 0.082 1.8E-06 65.5 9.5 159 123-299 36-200 (726)
336 cd00216 PQQ_DH Dehydrogenases 95.1 1.2 2.5E-05 55.9 20.2 111 189-303 173-326 (488)
337 KOG4649 PQQ (pyrrolo-quinoline 95.1 0.094 2E-06 57.9 9.0 110 130-252 20-130 (354)
338 smart00320 WD40 WD40 repeats. 95.0 0.037 7.9E-07 40.8 4.1 35 257-294 6-40 (40)
339 KOG3616 Selective LIM binding 94.8 0.11 2.3E-06 64.0 9.3 134 1009-1157 1153-1298(1636)
340 PLN03081 pentatricopeptide (PP 94.5 0.056 1.2E-06 70.7 6.8 62 1020-1084 393-454 (697)
341 KOG4649 PQQ (pyrrolo-quinoline 94.4 0.79 1.7E-05 50.9 14.0 110 181-305 23-132 (354)
342 PF08596 Lgl_C: Lethal giant l 94.3 0.13 2.9E-06 62.1 8.9 200 120-329 86-321 (395)
343 PRK11788 tetratricopeptide rep 94.1 0.12 2.5E-06 62.2 8.0 204 912-1149 118-354 (389)
344 PF13429 TPR_15: Tetratricopep 94.0 0.072 1.6E-06 61.3 5.6 170 909-1112 52-241 (280)
345 PF08553 VID27: VID27 cytoplas 94.0 0.2 4.3E-06 64.8 10.0 99 135-245 545-647 (794)
346 KOG1897 Damage-specific DNA bi 93.8 30 0.00066 45.5 30.7 63 226-293 498-563 (1096)
347 PLN03218 maturation of RBCL 1; 93.8 0.069 1.5E-06 72.1 5.6 170 913-1088 591-786 (1060)
348 PRK02888 nitrous-oxide reducta 93.5 0.23 5.1E-06 62.1 9.1 189 19-246 200-405 (635)
349 PF06977 SdiA-regulated: SdiA- 93.4 0.19 4.1E-06 57.0 7.3 203 122-338 23-245 (248)
350 KOG1916 Nuclear protein, conta 93.0 0.13 2.9E-06 64.8 5.8 131 164-301 180-328 (1283)
351 KOG2076 RNA polymerase III tra 92.9 0.29 6.3E-06 62.5 8.5 84 911-1044 149-233 (895)
352 COG3063 PilF Tfp pilus assembl 92.7 0.16 3.5E-06 55.7 5.3 102 1019-1149 140-242 (250)
353 PLN03218 maturation of RBCL 1; 92.4 0.34 7.4E-06 65.7 8.9 30 1019-1048 755-784 (1060)
354 PRK10747 putative protoheme IX 92.3 0.55 1.2E-05 57.2 9.9 221 910-1148 127-396 (398)
355 cd00216 PQQ_DH Dehydrogenases 92.2 0.8 1.7E-05 57.4 11.4 105 183-304 303-432 (488)
356 KOG2444 WD40 repeat protein [G 92.0 0.25 5.3E-06 54.2 5.5 66 181-249 70-136 (238)
357 KOG2079 Vacuolar assembly/sort 91.3 0.36 7.7E-06 62.6 6.8 106 180-296 98-203 (1206)
358 KOG4640 Anaphase-promoting com 91.3 0.23 4.9E-06 61.0 4.9 95 164-273 20-115 (665)
359 PLN03081 pentatricopeptide (PP 91.2 0.65 1.4E-05 60.9 9.4 65 1019-1086 291-355 (697)
360 PLN03077 Protein ECB2; Provisi 90.8 0.48 1E-05 63.6 7.9 133 914-1083 336-482 (857)
361 KOG2395 Protein involved in va 90.6 1 2.2E-05 54.5 9.3 100 135-245 397-500 (644)
362 PF08553 VID27: VID27 cytoplas 90.4 1.1 2.4E-05 58.2 10.2 142 180-336 492-640 (794)
363 PRK11447 cellulose synthase su 90.3 1.2 2.7E-05 61.8 11.3 121 1019-1143 604-741 (1157)
364 PF00780 CNH: CNH domain; Int 90.3 2.5 5.4E-05 48.4 12.1 147 131-304 103-263 (275)
365 PRK09782 bacteriophage N4 rece 90.2 0.26 5.5E-06 66.3 4.5 163 913-1111 521-703 (987)
366 PLN03077 Protein ECB2; Provisi 90.1 0.69 1.5E-05 62.1 8.5 197 913-1123 436-650 (857)
367 PF14783 BBS2_Mid: Ciliary BBS 90.1 1.5 3.3E-05 43.2 8.4 93 182-291 16-109 (111)
368 KOG0985 Vesicle coat protein c 89.9 0.31 6.7E-06 62.4 4.4 147 913-1109 1032-1190(1666)
369 PRK07764 DNA polymerase III su 89.6 14 0.00031 49.1 19.5 21 1119-1139 321-341 (824)
370 PF12894 Apc4_WD40: Anaphase-p 89.6 0.51 1.1E-05 39.2 4.1 36 10-46 10-45 (47)
371 KOG1924 RhoA GTPase effector D 88.9 10 0.00022 48.2 16.0 18 1028-1045 375-392 (1102)
372 PF14583 Pectate_lyase22: Olig 88.6 11 0.00023 45.3 15.7 78 120-204 35-115 (386)
373 COG0823 TolB Periplasmic compo 88.4 1.6 3.5E-05 53.5 9.2 164 7-202 188-361 (425)
374 KOG4640 Anaphase-promoting com 88.3 0.64 1.4E-05 57.3 5.4 71 223-303 28-99 (665)
375 KOG0566 Inositol-1,4,5-triphos 88.0 2.4 5.1E-05 54.8 10.2 74 883-975 714-791 (1080)
376 KOG4441 Proteins containing BT 88.0 3.2 7E-05 52.9 11.8 141 131-297 380-547 (571)
377 PHA02713 hypothetical protein; 87.8 1.9 4.1E-05 54.9 9.6 146 131-299 351-536 (557)
378 PF00780 CNH: CNH domain; Int 87.8 14 0.00031 42.1 16.1 151 131-300 6-169 (275)
379 TIGR02917 PEP_TPR_lipo putativ 87.4 0.7 1.5E-05 61.1 5.7 167 910-1110 31-218 (899)
380 KOG2079 Vacuolar assembly/sort 87.0 0.51 1.1E-05 61.2 3.7 101 135-244 101-202 (1206)
381 PF14783 BBS2_Mid: Ciliary BBS 86.9 2.5 5.4E-05 41.7 7.6 101 266-394 2-108 (111)
382 COG3386 Gluconolactonase [Carb 86.2 4.8 0.0001 47.3 11.0 136 120-273 110-264 (307)
383 PF04841 Vps16_N: Vps16, N-ter 86.0 15 0.00032 45.1 15.5 165 156-342 72-245 (410)
384 PRK14950 DNA polymerase III su 85.5 18 0.00038 46.6 16.5 72 1066-1138 256-336 (585)
385 PRK11788 tetratricopeptide rep 85.3 1.2 2.6E-05 53.4 5.8 62 1020-1085 182-243 (389)
386 TIGR00990 3a0801s09 mitochondr 85.3 1.1 2.4E-05 57.7 5.8 92 1019-1110 468-567 (615)
387 PF02897 Peptidase_S9_N: Proly 85.3 17 0.00036 44.4 15.7 36 12-47 124-164 (414)
388 TIGR02917 PEP_TPR_lipo putativ 85.0 1.1 2.4E-05 59.3 5.7 165 911-1111 611-796 (899)
389 TIGR03075 PQQ_enz_alc_DH PQQ-d 85.0 9.3 0.0002 48.4 13.5 28 24-51 121-148 (527)
390 COG3490 Uncharacterized protei 84.8 19 0.00042 41.1 14.0 128 129-285 44-180 (366)
391 TIGR00990 3a0801s09 mitochondr 84.8 1.3 2.8E-05 57.2 6.0 162 914-1111 307-493 (615)
392 PF12894 Apc4_WD40: Anaphase-p 84.8 1.6 3.4E-05 36.3 4.4 33 263-299 11-43 (47)
393 PF13429 TPR_15: Tetratricopep 84.1 0.47 1E-05 54.6 1.4 85 1020-1111 80-172 (280)
394 KOG2395 Protein involved in va 84.1 7.7 0.00017 47.4 11.3 135 183-336 348-493 (644)
395 PHA02713 hypothetical protein; 83.9 8.9 0.00019 48.9 12.8 144 131-297 303-489 (557)
396 PF06433 Me-amine-dh_H: Methyl 83.5 1.7 3.6E-05 51.1 5.5 58 239-305 271-329 (342)
397 KOG4441 Proteins containing BT 82.2 7.9 0.00017 49.5 11.3 143 134-299 334-502 (571)
398 PF05096 Glu_cyclase_2: Glutam 81.8 2.1 4.6E-05 48.6 5.4 114 12-153 45-160 (264)
399 KOG2003 TPR repeat-containing 81.3 4.3 9.3E-05 48.2 7.6 104 909-1044 427-550 (840)
400 PF03178 CPSF_A: CPSF A subuni 80.0 5.2 0.00011 47.1 8.2 180 191-401 2-202 (321)
401 PF00930 DPPIV_N: Dipeptidyl p 80.0 8.2 0.00018 46.2 9.9 35 11-46 42-76 (353)
402 PRK12370 invasion protein regu 79.8 1.7 3.7E-05 55.3 4.3 40 912-951 349-394 (553)
403 PF12234 Rav1p_C: RAVE protein 79.5 4.4 9.5E-05 51.6 7.6 109 180-294 40-154 (631)
404 PF04841 Vps16_N: Vps16, N-ter 79.0 27 0.00059 42.8 14.1 60 180-247 189-248 (410)
405 PRK11447 cellulose synthase su 78.9 2.3 5.1E-05 59.0 5.5 164 913-1111 541-737 (1157)
406 PF09976 TPR_21: Tetratricopep 78.9 2.3 5E-05 43.9 4.2 26 1019-1044 119-144 (145)
407 COG3490 Uncharacterized protei 78.3 20 0.00042 41.0 11.2 103 123-234 70-180 (366)
408 KOG1916 Nuclear protein, conta 78.2 1.6 3.5E-05 55.7 3.1 120 161-296 129-265 (1283)
409 KOG1840 Kinesin light chain [C 78.1 1.5 3.3E-05 54.5 3.0 104 1019-1122 284-391 (508)
410 PF06977 SdiA-regulated: SdiA- 77.9 16 0.00034 41.6 10.7 122 164-297 21-148 (248)
411 COG0823 TolB Periplasmic compo 77.8 7.2 0.00016 47.9 8.6 133 97-248 220-361 (425)
412 PF15390 DUF4613: Domain of un 77.3 4.9 0.00011 49.7 6.8 70 125-200 117-187 (671)
413 PF04733 Coatomer_E: Coatomer 77.1 2.1 4.5E-05 49.9 3.6 166 904-1110 38-226 (290)
414 TIGR02521 type_IV_pilW type IV 77.0 3.9 8.5E-05 44.0 5.6 91 1019-1111 100-195 (234)
415 PF15390 DUF4613: Domain of un 76.8 16 0.00034 45.6 10.8 120 262-401 55-186 (671)
416 PRK10747 putative protoheme IX 76.5 3.1 6.7E-05 50.7 5.0 106 910-1047 93-216 (398)
417 COG5010 TadD Flp pilus assembl 76.2 4.7 0.0001 45.4 5.7 87 1019-1109 135-226 (257)
418 PRK12370 invasion protein regu 75.3 9.3 0.0002 48.7 9.1 87 1019-1110 339-431 (553)
419 KOG2444 WD40 repeat protein [G 75.3 2.4 5.2E-05 46.8 3.1 59 179-249 112-170 (238)
420 PRK10049 pgaA outer membrane p 74.9 3.4 7.3E-05 54.8 5.1 177 911-1109 247-451 (765)
421 PF06433 Me-amine-dh_H: Methyl 74.8 14 0.00031 43.5 9.5 109 178-298 103-215 (342)
422 PF03178 CPSF_A: CPSF A subuni 74.4 9.7 0.00021 44.8 8.3 113 164-296 88-202 (321)
423 COG3391 Uncharacterized conser 74.3 25 0.00054 42.6 11.9 183 124-329 77-267 (381)
424 PF05096 Glu_cyclase_2: Glutam 74.0 14 0.00031 42.1 9.0 118 166-304 46-165 (264)
425 PHA03247 large tegument protei 73.9 41 0.00088 48.8 14.5 16 499-514 2161-2176(3151)
426 PF12234 Rav1p_C: RAVE protein 73.9 8.2 0.00018 49.3 7.8 103 227-335 41-149 (631)
427 COG3204 Uncharacterized protei 73.9 26 0.00057 40.4 10.8 165 120-296 85-263 (316)
428 KOG1126 DNA-binding cell divis 73.2 3.8 8.3E-05 51.3 4.6 92 1019-1114 490-586 (638)
429 KOG0550 Molecular chaperone (D 73.1 5.5 0.00012 47.4 5.5 163 906-1114 174-350 (486)
430 KOG4499 Ca2+-binding protein R 72.6 26 0.00057 39.0 10.1 97 216-324 161-263 (310)
431 KOG1129 TPR repeat-containing 72.5 3.4 7.3E-05 47.6 3.5 63 1019-1085 396-458 (478)
432 COG3391 Uncharacterized conser 72.4 41 0.00089 40.8 13.2 116 125-250 164-288 (381)
433 TIGR02521 type_IV_pilW type IV 72.0 12 0.00025 40.3 7.7 141 912-1085 42-198 (234)
434 COG3823 Glutamine cyclotransfe 71.9 13 0.00027 40.7 7.4 150 22-205 55-210 (262)
435 PF10313 DUF2415: Uncharacteri 71.9 7.3 0.00016 31.8 4.3 31 12-42 1-34 (43)
436 PRK10370 formate-dependent nit 71.8 7.7 0.00017 42.5 6.2 89 1019-1111 74-170 (198)
437 PF08596 Lgl_C: Lethal giant l 71.2 6.9 0.00015 47.6 6.1 121 166-296 3-173 (395)
438 TIGR02552 LcrH_SycD type III s 71.2 3.8 8.2E-05 41.2 3.3 26 1019-1044 52-77 (135)
439 PRK08691 DNA polymerase III su 71.1 64 0.0014 42.0 14.7 22 1142-1163 336-357 (709)
440 PRK15174 Vi polysaccharide exp 70.8 7.9 0.00017 50.4 7.0 164 911-1108 120-307 (656)
441 PHA02790 Kelch-like protein; P 70.6 22 0.00047 44.6 10.5 141 131-297 318-471 (480)
442 PF14870 PSII_BNR: Photosynthe 70.5 59 0.0013 38.2 13.3 116 211-341 143-259 (302)
443 PF07719 TPR_2: Tetratricopept 70.2 4.2 9.1E-05 30.3 2.6 26 1019-1044 2-27 (34)
444 COG3386 Gluconolactonase [Carb 70.1 41 0.00089 39.6 12.0 138 165-323 111-263 (307)
445 PRK13616 lipoprotein LpqB; Pro 69.8 25 0.00055 45.1 10.9 152 164-342 349-526 (591)
446 PF07462 MSP1_C: Merozoite sur 68.3 7.6 0.00017 47.6 5.5 20 1123-1142 213-232 (574)
447 PF00515 TPR_1: Tetratricopept 67.7 5.1 0.00011 30.1 2.6 26 1019-1044 2-27 (34)
448 PHA03098 kelch-like protein; P 67.6 29 0.00064 43.9 11.0 101 135-248 297-417 (534)
449 PF00930 DPPIV_N: Dipeptidyl p 67.1 18 0.00039 43.3 8.5 69 129-206 1-78 (353)
450 TIGR00540 hemY_coli hemY prote 67.0 4.6 9.9E-05 49.4 3.5 106 910-1047 93-216 (409)
451 PHA03098 kelch-like protein; P 66.5 33 0.00071 43.5 11.2 104 180-298 389-513 (534)
452 PRK15179 Vi polysaccharide bio 66.4 17 0.00038 47.4 8.6 39 911-949 96-140 (694)
453 KOG1924 RhoA GTPase effector D 66.1 18 0.00039 46.1 8.0 24 1165-1188 509-532 (1102)
454 PF10602 RPN7: 26S proteasome 64.7 14 0.00031 39.8 6.3 32 1016-1047 34-65 (177)
455 PF10366 Vps39_1: Vacuolar sor 64.1 16 0.00034 36.1 5.9 92 1061-1169 4-99 (108)
456 KOG1128 Uncharacterized conser 63.7 6.8 0.00015 49.6 4.0 161 913-1110 436-612 (777)
457 PF14938 SNAP: Soluble NSF att 63.5 4.3 9.4E-05 46.9 2.2 69 1018-1113 114-183 (282)
458 PRK15174 Vi polysaccharide exp 63.2 27 0.00058 45.6 9.6 89 1018-1110 284-377 (656)
459 PF13432 TPR_16: Tetratricopep 63.1 5.4 0.00012 34.7 2.3 52 962-1044 6-57 (65)
460 TIGR00540 hemY_coli hemY prote 62.7 28 0.00061 42.6 9.2 188 910-1110 127-360 (409)
461 PF13176 TPR_7: Tetratricopept 62.3 6 0.00013 30.6 2.1 24 1021-1044 2-25 (36)
462 PF07462 MSP1_C: Merozoite sur 61.8 13 0.00029 45.6 5.8 9 1019-1027 54-62 (574)
463 PRK12323 DNA polymerase III su 61.3 2.6E+02 0.0056 36.5 17.1 24 1141-1164 340-363 (700)
464 PRK10049 pgaA outer membrane p 60.7 32 0.00069 45.8 9.8 103 910-1044 24-142 (765)
465 PF05694 SBP56: 56kDa selenium 60.7 21 0.00045 43.4 7.1 224 162-402 68-343 (461)
466 PF00637 Clathrin: Region in C 60.3 1.8 4E-05 44.3 -1.4 87 912-1034 53-141 (143)
467 COG2956 Predicted N-acetylgluc 60.2 9.2 0.0002 44.3 3.9 123 915-1088 155-281 (389)
468 PF13414 TPR_11: TPR repeat; P 60.1 8 0.00017 34.0 2.8 27 1019-1045 4-30 (69)
469 PF08728 CRT10: CRT10; InterP 60.0 9 0.00019 49.4 4.2 115 83-199 112-246 (717)
470 KOG2247 WD40 repeat-containing 60.0 11 0.00023 45.9 4.5 146 126-294 40-186 (615)
471 KOG1126 DNA-binding cell divis 59.8 9.2 0.0002 48.0 4.1 90 1019-1110 422-548 (638)
472 PRK15359 type III secretion sy 59.7 6.8 0.00015 40.5 2.6 26 1019-1044 93-118 (144)
473 PRK15359 type III secretion sy 59.1 25 0.00054 36.3 6.8 27 1019-1045 59-85 (144)
474 KOG1155 Anaphase-promoting com 59.0 22 0.00048 43.2 6.8 30 1019-1048 433-462 (559)
475 COG3204 Uncharacterized protei 58.5 1.9E+02 0.0041 33.7 13.7 161 164-335 85-254 (316)
476 KOG4626 O-linked N-acetylgluco 57.7 8 0.00017 48.1 3.1 163 914-1118 299-476 (966)
477 TIGR03606 non_repeat_PQQ dehyd 57.7 1E+02 0.0022 38.3 12.6 51 223-274 37-89 (454)
478 PRK14959 DNA polymerase III su 55.4 1.4E+02 0.003 38.7 13.5 23 1119-1141 318-340 (624)
479 PF07569 Hira: TUP1-like enhan 55.3 22 0.00047 39.7 5.9 69 224-296 19-95 (219)
480 PF10168 Nup88: Nuclear pore c 54.8 40 0.00086 44.3 8.9 37 262-298 145-181 (717)
481 PF13181 TPR_8: Tetratricopept 54.7 11 0.00024 28.1 2.5 27 1019-1045 2-28 (34)
482 PF14870 PSII_BNR: Photosynthe 54.5 37 0.0008 39.8 7.8 152 164-337 144-298 (302)
483 PF10313 DUF2415: Uncharacteri 53.9 23 0.0005 29.0 4.1 31 265-297 2-34 (43)
484 PRK14954 DNA polymerase III su 53.0 2.2E+02 0.0048 37.0 14.9 71 1067-1138 269-348 (620)
485 PF07995 GSDH: Glucose / Sorbo 52.6 80 0.0017 37.5 10.4 59 223-283 9-68 (331)
486 PF13763 DUF4167: Domain of un 52.5 14 0.00029 34.3 2.9 29 1017-1045 38-66 (80)
487 smart00299 CLH Clathrin heavy 52.5 43 0.00094 34.0 7.2 69 1070-1145 67-137 (140)
488 PF07676 PD40: WD40-like Beta 52.2 19 0.00042 28.0 3.5 24 483-506 13-38 (39)
489 PRK13616 lipoprotein LpqB; Pro 52.1 70 0.0015 41.2 10.3 151 122-296 351-525 (591)
490 KOG3771 Amphiphysin [Intracell 51.9 1.1E+02 0.0024 37.4 11.2 15 1175-1189 245-259 (460)
491 KOG0553 TPR repeat-containing 50.4 16 0.00036 42.0 3.9 77 936-1044 95-175 (304)
492 PRK13684 Ycf48-like protein; P 49.9 3.5E+02 0.0075 32.2 15.2 237 122-396 91-327 (334)
493 COG3063 PilF Tfp pilus assembl 49.2 17 0.00037 40.5 3.6 26 1019-1044 70-95 (250)
494 PHA02790 Kelch-like protein; P 49.1 84 0.0018 39.4 10.4 102 134-248 273-387 (480)
495 PF13424 TPR_12: Tetratricopep 49.1 23 0.0005 31.9 4.0 72 1018-1115 5-76 (78)
496 PF13424 TPR_12: Tetratricopep 49.0 16 0.00035 32.9 3.0 26 1019-1044 47-72 (78)
497 PF07899 Frigida: Frigida-like 48.9 35 0.00075 39.8 6.3 91 1017-1126 111-202 (290)
498 KOG4499 Ca2+-binding protein R 48.8 85 0.0018 35.2 8.7 100 124-231 161-270 (310)
499 PLN03088 SGT1, suppressor of 48.7 16 0.00035 43.8 3.8 79 911-1044 12-96 (356)
500 PRK09782 bacteriophage N4 rece 48.3 18 0.00039 49.2 4.5 162 911-1124 552-731 (987)
No 1
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.8e-118 Score=1018.73 Aligned_cols=767 Identities=21% Similarity=0.296 Sum_probs=646.7
Q ss_pred ccccccCCCcEEEEEeecCCceeEeecCCCceeeeccccceEEeeeccCCcccchhhhhhhhhhcccccccCCCCccccc
Q 000722 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMR 83 (1331)
Q Consensus 4 l~~L~gHs~~V~~lafSPdg~~LaSgs~DGtV~VWD~~tg~~i~s~~~~~~~~i~~vspdg~~Lasgs~d~~g~~l~~l~ 83 (1331)
.++|..|+++|+|+.|||..+|++++..+|.|.|||++|...+++|+..
T Consensus 6 krk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~------------------------------- 54 (794)
T KOG0276|consen 6 KRKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVS------------------------------- 54 (794)
T ss_pred hhHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeec-------------------------------
Confidence 4677889999999999999999999999999999999999999998733
Q ss_pred CCceeEEeeecchhhHHHHhhhccccccCCcccccccccccCCCCCCCCceEEEEEeeccee-EeeeecccCCCCCcccc
Q 000722 84 GGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQEL 162 (1331)
Q Consensus 84 gg~V~sVaf~DgtIrvWdl~tg~~l~~~~~~~~~~~~~~V~svafspdg~~lLasgs~d~iI-vwDl~t~~~~~i~~~~~ 162 (1331)
..+|++..|-...+ |+++|++|..| +++++|++ .+..+..
T Consensus 55 ------------------------------------~~PvRa~kfiaRkn-Wiv~GsDD~~IrVfnynt~e--kV~~FeA 95 (794)
T KOG0276|consen 55 ------------------------------------EVPVRAAKFIARKN-WIVTGSDDMQIRVFNYNTGE--KVKTFEA 95 (794)
T ss_pred ------------------------------------ccchhhheeeeccc-eEEEecCCceEEEEecccce--eeEEeec
Confidence 22344555666554 99999999988 66999965 6778999
Q ss_pred ccccceeeehhhcccCCCcceEeecCCCceeeeeehhh-heeehhhcCCCccchhhhhHhhhccccEEEeecCCCceEEE
Q 000722 163 DNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMIS-WKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLIL 241 (1331)
Q Consensus 163 h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t-~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrV 241 (1331)
|.++|+|++. +|..++++++|+|.+|++||++. +.|.++|. ||+++|++++ +.+.|.+.|+|+|.|++|+|
T Consensus 96 H~DyIR~iav-----HPt~P~vLtsSDDm~iKlW~we~~wa~~qtfe-GH~HyVMqv~--fnPkD~ntFaS~sLDrTVKV 167 (794)
T KOG0276|consen 96 HSDYIRSIAV-----HPTLPYVLTSSDDMTIKLWDWENEWACEQTFE-GHEHYVMQVA--FNPKDPNTFASASLDRTVKV 167 (794)
T ss_pred cccceeeeee-----cCCCCeEEecCCccEEEEeeccCceeeeeEEc-CcceEEEEEE--ecCCCccceeeeeccccEEE
Confidence 9999999999 46799999999999999999985 68888887 9999999998 26677889999999999999
Q ss_pred EeccCCCccccccccceeeeccCcEEEEEechhccCCCcEEEeecCceeEeeeccchhhhcccCCCCcccccccccccCC
Q 000722 242 WSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHP 321 (1331)
Q Consensus 242 WDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~sva 321 (1331)
|.+.+.. +.+++++|+.+|+|++|.+. ++.++|+||++|.+|+|||+++..|+++ +.||.++|+++.
T Consensus 168 Wslgs~~------~nfTl~gHekGVN~Vdyy~~-gdkpylIsgaDD~tiKvWDyQtk~CV~T------LeGHt~Nvs~v~ 234 (794)
T KOG0276|consen 168 WSLGSPH------PNFTLEGHEKGVNCVDYYTG-GDKPYLISGADDLTIKVWDYQTKSCVQT------LEGHTNNVSFVF 234 (794)
T ss_pred EEcCCCC------CceeeeccccCcceEEeccC-CCcceEEecCCCceEEEeecchHHHHHH------hhcccccceEEE
Confidence 9998765 56779999999999999984 4678999999999999999999999988 899999999999
Q ss_pred CCCCCcee-eeeecce--eeeeecCccccccccccccccCCCccccccccceEEEEEEeccCCccEeeecceeEEEEeec
Q 000722 322 RAPNLDIL-TCVKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEF 398 (1331)
Q Consensus 322 fspdg~lL-a~s~Dg~--IWdl~~~~~~~l~~~~~~~~~~~~~~~l~~h~~~~I~~la~sp~~~~lLAtGs~DG~Il~VW 398 (1331)
|+|.-.++ +||+||+ ||...+- +...++..... ++||++.++ +...++.|.++|.| +.
T Consensus 235 fhp~lpiiisgsEDGTvriWhs~Ty---------------~lE~tLn~gle-RvW~I~~~k-~~~~i~vG~Deg~i--~v 295 (794)
T KOG0276|consen 235 FHPELPIIISGSEDGTVRIWNSKTY---------------KLEKTLNYGLE-RVWCIAAHK-GDGKIAVGFDEGSV--TV 295 (794)
T ss_pred ecCCCcEEEEecCCccEEEecCcce---------------ehhhhhhcCCc-eEEEEeecC-CCCeEEEeccCCcE--EE
Confidence 99998855 8999996 7887653 11234444555 999999999 56669999999998 44
Q ss_pred CC-CCCCCCCCCCCCCCCCCcceEEEeeeeeeeeeeecccCCCCCCCCCCCccccCCCCCCCCchhhHhhhccccccccC
Q 000722 399 DP-RSLPAVAPLPTPSGSRDHSAVYIVERELKLVNFQLSSAANPSLGNNGSLSETGRLKGDLPDALQIKQIKKHISTPVP 477 (1331)
Q Consensus 399 Dl-r~~p~i~~~~t~s~~~~~s~~~~~~~~l~l~~fq~~~~~~~~lg~~~~ls~~G~~~~~~~e~l~v~~~~r~i~t~~~ 477 (1331)
.+ ++.|. .+.+.....+|...++++..+...... .. ....++.++ ...|++.+.--
T Consensus 296 ~lgreeP~------vsMd~~gKIiwa~~~ei~~~~~ks~~~-------~~--------ev~DgErL~--LsvKeLgs~ei 352 (794)
T KOG0276|consen 296 KLGREEPA------VSMDSNGKIIWAVHSEIQAVNLKSVGA-------QK--------EVTDGERLP--LSVKELGSVEI 352 (794)
T ss_pred EccCCCCc------eeecCCccEEEEcCceeeeeeceeccC-------cc--------cccCCcccc--chhhhcccccc
Confidence 43 44433 344455678899888875444321111 00 122223322 22333444433
Q ss_pred CCceeEEEEeeCCcEEEEEcCCCceeeEEeecceeEeecCcceeeehhcchhhHHHhhhccCCCcccccCCCCchHHHHH
Q 000722 478 HDSYSILSVSSSGKYLAVVWPDIPYFSVYKVSDWSIVDSGSARLLAWDTCRDRFAILESALTPRLPIIPKGGSSRKAKEA 557 (1331)
Q Consensus 478 ~e~~s~ls~SpdGrylaVv~~~~g~y~Iy~i~~~~~i~~G~~~~~aWs~~~~~fAvl~~~~~~~i~~~~k~~~~~k~ke~ 557 (1331)
++. .+.+||+||+++|+ ++|+|+||+...||++.+|++..|+|+.+++.|||++++... . .+|+||+.
T Consensus 353 yPq--~L~hsPNGrfV~Vc--gdGEyiIyTala~RnK~fG~~~eFvw~~dsne~avRes~~~v--k------i~knfke~ 420 (794)
T KOG0276|consen 353 YPQ--TLAHSPNGRFVVVC--GDGEYIIYTALALRNKAFGSGLEFVWAADSNEFAVRESNGNV--K------IFKNFKEH 420 (794)
T ss_pred chH--HhccCCCCcEEEEe--cCccEEEEEeeehhhcccccceeEEEcCCCCeEEEEecCCce--E------EEecceec
Confidence 332 69999999999777 899999999999999999999999999999999999875321 1 12334444
Q ss_pred HHHHHHHHHHHHhhcccceEEEEEEecCCccceeeeccCCCCCceeeeccceeeeeeeecccccccchhhhhcccccccc
Q 000722 558 AAAAAAAQAAAASAASSATVQARILLDDGTSNILMRSIGGSSEPVIGLHGGALLGVAYRTSRRISPIAATAISTIQSMPL 637 (1331)
Q Consensus 558 ~~aaa~a~aaa~aaa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~llgv~~~~~~~~~~~~~~~~~~~~~~~~ 637 (1331)
+++... ...++++||.||||+.+
T Consensus 421 -----------------------------------ksi~~~-~~~e~i~gg~Llg~~ss--------------------- 443 (794)
T KOG0276|consen 421 -----------------------------------KSIRPD-MSAEGIFGGPLLGVRSS--------------------- 443 (794)
T ss_pred -----------------------------------cccccc-cceeeecCCceEEEEeC---------------------
Confidence 444433 34688999999999876
Q ss_pred cccCCCCCccccccCCCCCCCCCCCcCCCcceeeeeeecccccCCCCCCccccccccchhhhhhcceeeEEEeecccccc
Q 000722 638 SGFGSSGLSSFTTFDDGFSSQKSPAEAAPQNFQLYSWETFQPVGGLLPQPEWTAWDQTVEYCAFAYQHYIVISSLCPQYR 717 (1331)
Q Consensus 638 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ydw~~~~~~~~~~~~~~~~~w~~~~~~~al~~~~~i~i~~~~~~~~ 717 (1331)
+++|||||+++++||||+..++.++|+++|++||+++.+++||++++...-
T Consensus 444 -----------------------------~~~~fydW~~~~lVrrI~v~~k~v~w~d~g~lVai~~d~Sfyil~~n~d~v 494 (794)
T KOG0276|consen 444 -----------------------------DFLCFYDWESGELVRRIEVTSKHVYWSDNGELVAIAGDDSFYILKFNADAV 494 (794)
T ss_pred -----------------------------CeEEEEEcccceEEEEEeeccceeEEecCCCEEEEEecCceeEEEecHHHH
Confidence 459999999999999999999999999999999999999999999963221
Q ss_pred ccccccccccccceeeeeeeeeeccceEEEEEEeccceeeeecchhhhHHhhHHHHHhhHHhhcCCeEEEEecccchhhc
Q 000722 718 YLGDVAIPYATGAVWHRRQLFVVTPTTIECVFVDAGVAAIDVETMKMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQ 797 (1331)
Q Consensus 718 ~~~~~~~~~~~s~~w~~~~~f~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 797 (1331)
. ....+|. ..|+.||+.+|.. +.+..+.++++.|+||||+||+.
T Consensus 495 ~------~a~e~g~-------~v~eeGiedAfev----------------LgE~sE~v~tg~WvgD~fiytts------- 538 (794)
T KOG0276|consen 495 A------NAVEQGI-------EVTEEGIEDAFEV----------------LGEVSESVKTGKWVGDCFIYTTS------- 538 (794)
T ss_pred H------HHHhcCC-------CCcchhHHHHHHH----------------HhhhhhheeeceeeeeEEEEeec-------
Confidence 1 0012221 2467788888764 22336779999999999988886
Q ss_pred cccccCCcceeeeeecccccCCCCCCcccCCCcccccCCCCCCcchhhhcccceEEEcCCceEEEEeecCCCccCCCCCe
Q 000722 798 DRIKLRPPMLQVVRLASFQHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVAVTRFPTEQKRPIGPL 877 (1331)
Q Consensus 798 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~ 877 (1331)
.||++|++||++.++.|++ +++
T Consensus 539 ---------------------------------------------------~nrlnY~vgGe~~~v~h~~-------~~m 560 (794)
T KOG0276|consen 539 ---------------------------------------------------NNRLNYLVGGETYTVAHLD-------RIM 560 (794)
T ss_pred ---------------------------------------------------ccceeEEcCCceEEEEEec-------cch
Confidence 2566699999999999999 999
Q ss_pred EEEee--eccEEeeehhhhhhhhcccCCCcceeeeecccCCchhhhHHHhhhccccchhHHHHHhhcccccccccCCCcc
Q 000722 878 VVVGV--KDGVLWLIDRYMCAHALSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLAQFMLGMGYATEALHLPGIS 955 (1331)
Q Consensus 878 ~~~g~--~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~i~~~~~~~~a~fl~~~g~~e~Al~~~~ds 955 (1331)
|++|| +++++||.||+.++++|.|++..|+||+++++||++.|.+.+++||.++|.++|+|||++||+|+||++.+|
T Consensus 561 ylLgy~~~~~rvYL~Dke~nVi~y~l~l~vleyqt~vmrrd~~~a~~vLp~I~k~~rt~va~Fle~~g~~e~AL~~s~D- 639 (794)
T KOG0276|consen 561 YLLGYVANDNRVYLHDKELNVISYKILLEVLEYQTLVLRRDLEVADGVLPTIPKEIRTKVAHFLESQGMKEQALELSTD- 639 (794)
T ss_pred hheeeeecCCEEEEeecccceEeEeeehHHHHHHHHhhhccccccccccccCchhhhhhHHhHhhhccchHhhhhcCCC-
Confidence 99999 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeeeeccccchHHHHHHhhhhcccccccCCCCCCCChhhhcccccchhhHHHHHHHHHHHHHHHHhhhhccccccchH
Q 000722 956 KRLEFDLAMQSNDLKRALQCLITMSNSRDIGQDHPGLDLNDILTLTTKKENIVEAVQGIVKFAKEFLDLIDAADATGQAN 1035 (1331)
Q Consensus 956 ~~~~f~la~~~g~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~~~al~~g~~~ 1035 (1331)
+++|||||+|+|+|++|.++| .+.+.+ .||++||++|++.|++.
T Consensus 640 ~d~rFelal~lgrl~iA~~la------~e~~s~------------------------------~Kw~~Lg~~al~~~~l~ 683 (794)
T KOG0276|consen 640 PDQRFELALKLGRLDIAFDLA------VEANSE------------------------------VKWRQLGDAALSAGELP 683 (794)
T ss_pred hhhhhhhhhhcCcHHHHHHHH------Hhhcch------------------------------HHHHHHHHHHhhcccch
Confidence 899999999999999999999 666666 89999999999999999
Q ss_pred HHHHHHHHHHhcccccccccccccccchhhhcccccchhhhhhhHHHHhhccChhhhhhhh-hcCchHHHHHHhhhhhhH
Q 000722 1036 IAREALKRLAAAGSVKGALQGHELRGLALRLANHGELTRLSGLVTNLISLGLGREAAFSAA-ILGDNALMEKAWQDTGML 1114 (1331)
Q Consensus 1036 ~a~~~~~~~~~~~~~~~~~~~~~~~~l~ll~~~~g~~~~l~~l~~~~~~~~~~~~~af~~~-~lgd~~~~~~~l~~~~~~ 1114 (1331)
+|.|||+++ . ||.+|+|||.+.||.++|.+|++.|+++|++ |.||.|+ ++||+++|.++|++|+|+
T Consensus 684 lA~EC~~~a---~---------d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~-N~AF~~~~l~g~~~~C~~lLi~t~r~ 750 (794)
T KOG0276|consen 684 LASECFLRA---R---------DLGSLLLLYTSSGNAEGLAVLASLAKKQGKN-NLAFLAYFLSGDYEECLELLISTQRL 750 (794)
T ss_pred hHHHHHHhh---c---------chhhhhhhhhhcCChhHHHHHHHHHHhhccc-chHHHHHHHcCCHHHHHHHHHhcCcC
Confidence 999999999 4 8889999999999999999999999999999 9999999 999999999999999999
Q ss_pred HHHHHhhhccCCCcHHHHHHHHHHHHhhhcc
Q 000722 1115 AEAVLHAHAHGRPSLKNLVEAWNKMLQKEVD 1145 (1331)
Q Consensus 1115 ~~A~~~A~~~~~~~~~~~~~~w~~~l~~~~~ 1145 (1331)
|||+||||||+|++++++|++||+.|.+..+
T Consensus 751 peAal~ArtYlps~vs~iv~~wk~~l~k~~~ 781 (794)
T KOG0276|consen 751 PEAALFARTYLPSQVSRIVELWKEDLSKVSE 781 (794)
T ss_pred cHHHHHHhhhChHHHHHHHHHHHHHhhhhhh
Confidence 9999999999999999999999999995543
No 2
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.5e-110 Score=979.27 Aligned_cols=766 Identities=20% Similarity=0.290 Sum_probs=659.6
Q ss_pred ccccccCCCcEEEEEeecCCceeEeecCCCceeeeccccceEEeeeccCCcccchhhhhhhhhhcccccccCCCCccccc
Q 000722 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMR 83 (1331)
Q Consensus 4 l~~L~gHs~~V~~lafSPdg~~LaSgs~DGtV~VWD~~tg~~i~s~~~~~~~~i~~vspdg~~Lasgs~d~~g~~l~~l~ 83 (1331)
+..|+..+.+|++++|||..+|++++-++|.|++||++.+.++.+|..|
T Consensus 2 ltkfEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeH------------------------------- 50 (1202)
T KOG0292|consen 2 LTKFESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEH------------------------------- 50 (1202)
T ss_pred cchhhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhcc-------------------------------
Confidence 4678899999999999999999999999999999999999999998855
Q ss_pred CCceeEEeeecchhhHHHHhhhccccccCCcccccccccccCCCCCCCCceEEEEEeeccee-EeeeecccCCCCCcccc
Q 000722 84 GGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQEL 162 (1331)
Q Consensus 84 gg~V~sVaf~DgtIrvWdl~tg~~l~~~~~~~~~~~~~~V~svafspdg~~lLasgs~d~iI-vwDl~t~~~~~i~~~~~ 162 (1331)
+++|+.++|||+++ +|++|++|..| +|++.+. +++.++.+
T Consensus 51 ------------------------------------dGpVRgv~FH~~qp-lFVSGGDDykIkVWnYk~r--rclftL~G 91 (1202)
T KOG0292|consen 51 ------------------------------------DGPVRGVDFHPTQP-LFVSGGDDYKIKVWNYKTR--RCLFTLLG 91 (1202)
T ss_pred ------------------------------------CCccceeeecCCCC-eEEecCCccEEEEEecccc--eehhhhcc
Confidence 23455677899998 99999999988 8999985 47888999
Q ss_pred ccccceeeehhhcccCCCcceEeecCCCceeeeeehhhheeehhhcCCCccchhhhhHhhhccccEEEeecCCCceEEEE
Q 000722 163 DNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILW 242 (1331)
Q Consensus 163 h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrVW 242 (1331)
|.++|+.+.| ++.-+||+++|+|.+|||||+++++++..+. ||+++|+|.+ |+|..++++|+|.|.+||||
T Consensus 92 HlDYVRt~~F-----HheyPWIlSASDDQTIrIWNwqsr~~iavlt-GHnHYVMcAq---FhptEDlIVSaSLDQTVRVW 162 (1202)
T KOG0292|consen 92 HLDYVRTVFF-----HHEYPWILSASDDQTIRIWNWQSRKCIAVLT-GHNHYVMCAQ---FHPTEDLIVSASLDQTVRVW 162 (1202)
T ss_pred ccceeEEeec-----cCCCceEEEccCCCeEEEEeccCCceEEEEe-cCceEEEeec---cCCccceEEEecccceEEEE
Confidence 9999999999 5689999999999999999999999999998 9999999998 89999999999999999999
Q ss_pred eccCCC---------------------ccc--cccccceeeeccCcEEEEEechhccCCCcEEEeecCceeEeeeccchh
Q 000722 243 SADHGQ---------------------DSR--ELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFK 299 (1331)
Q Consensus 243 Dl~tg~---------------------~~~--~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~ 299 (1331)
|+..-+ ... ....++.+.||+.+|++++||| .-++|+||++|+.|++|.++..+
T Consensus 163 DisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhp---TlpliVSG~DDRqVKlWrmnetK 239 (1202)
T KOG0292|consen 163 DISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHP---TLPLIVSGADDRQVKLWRMNETK 239 (1202)
T ss_pred eecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecC---CcceEEecCCcceeeEEEecccc
Confidence 986311 010 2234567899999999999999 78999999999999999999877
Q ss_pred hhcccCCCCcccccccccccCCCCCCCc-eeeeeecce--eeeeecCccccccccccccccCCCccccccccceEEEEEE
Q 000722 300 ELRRIKPVPKLACHSVASWCHPRAPNLD-ILTCVKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMV 376 (1331)
Q Consensus 300 ~l~~~~~~~~l~~H~~~V~svafspdg~-lLa~s~Dg~--IWdl~~~~~~~l~~~~~~~~~~~~~~~l~~h~~~~I~~la 376 (1331)
.+.. .++++|.++|+++.|+|... +|+.|+|++ |||+..+ ..+++|+..++ +.|+++
T Consensus 240 aWEv----DtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kR---------------t~v~tfrrend-RFW~la 299 (1202)
T KOG0292|consen 240 AWEV----DTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKR---------------TSVQTFRREND-RFWILA 299 (1202)
T ss_pred ceee----hhhhcccCCcceEEecCccceeEecCCCccEEEEecccc---------------cceeeeeccCC-eEEEEE
Confidence 6644 66899999999999999877 558899985 8999865 45778888888 999999
Q ss_pred eccCCccEeeecceeEEEEeecCC-CCCCCCCCCCCCCCCCCcceEEEeeeeeeeeeeecccCCCCCCCCCCCccccCCC
Q 000722 377 AHSLQPHLVATGTNVGVIISEFDP-RSLPAVAPLPTPSGSRDHSAVYIVERELKLVNFQLSSAANPSLGNNGSLSETGRL 455 (1331)
Q Consensus 377 ~sp~~~~lLAtGs~DG~Il~VWDl-r~~p~i~~~~t~s~~~~~s~~~~~~~~l~l~~fq~~~~~~~~lg~~~~ls~~G~~ 455 (1331)
.|| ..+++|.|++.|++ ||.+ |++|..+.. .+.++|++++.++.++|....+.. +.+
T Consensus 300 ahP-~lNLfAAgHDsGm~--VFkleRErpa~~v~-------~n~LfYvkd~~i~~~d~~t~~d~~-------v~~----- 357 (1202)
T KOG0292|consen 300 AHP-ELNLFAAGHDSGMI--VFKLERERPAYAVN-------GNGLFYVKDRFIRSYDLRTQKDTA-------VAS----- 357 (1202)
T ss_pred ecC-CcceeeeecCCceE--EEEEcccCceEEEc-------CCEEEEEccceEEeeeccccccce-------eEe-----
Confidence 999 69999999999997 7887 467666543 577899998888888886422111 000
Q ss_pred CCCCCchhhHhhhccccccccCCCceeEEEEeeCCcEEEEEcC-CCceeeEEeecce-------eEeecCcceeeehhcc
Q 000722 456 KGDLPDALQIKQIKKHISTPVPHDSYSILSVSSSGKYLAVVWP-DIPYFSVYKVSDW-------SIVDSGSARLLAWDTC 527 (1331)
Q Consensus 456 ~~~~~e~l~v~~~~r~i~t~~~~e~~s~ls~SpdGrylaVv~~-~~g~y~Iy~i~~~-------~~i~~G~~~~~aWs~~ 527 (1331)
.|..++ .+.++-.++++|...-+.++++ +++.|.+|.+... +...++++....| ..
T Consensus 358 -------------lr~~g~--~~~~~~smsYNpae~~vlics~~~n~~y~L~~ipk~~~~~~~~~~~~k~tG~~a~f-va 421 (1202)
T KOG0292|consen 358 -------------LRRPGT--LWQPPRSLSYNPAENAVLICSNLDNGEYELVQIPKDSDGVSDGKDVKKGTGEGALF-VA 421 (1202)
T ss_pred -------------ccCCCc--ccCCcceeeeccccCeEEEEeccCCCeEEEEEecCcccccCCchhhhcCCCCceEE-EE
Confidence 111122 1233237999999888877765 8999999998632 3344888999999 58
Q ss_pred hhhHHHhhhccCCCcccccCCCCchHHHHHHHHHHHHHHHHHhhcccceEEEEEEecCCccceeeeccCCCCCceeeecc
Q 000722 528 RDRFAILESALTPRLPIIPKGGSSRKAKEAAAAAAAAQAAAASAASSATVQARILLDDGTSNILMRSIGGSSEPVIGLHG 607 (1331)
Q Consensus 528 ~~~fAvl~~~~~~~i~~~~k~~~~~k~ke~~~aaa~a~aaa~aaa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 607 (1331)
++||||++.+.. ++.||.+. |.++|.+..+.....++++
T Consensus 422 rNrfavl~k~~~------------------------------------~v~ik~l~-----N~vtkkl~~~~~~~~IF~a 460 (1202)
T KOG0292|consen 422 RNRFAVLDKSNE------------------------------------QVVIKNLK-----NKVTKKLLLPESTDDIFYA 460 (1202)
T ss_pred ecceEEEEecCc------------------------------------ceEEeccc-----chhhhcccCcccccceeec
Confidence 999999986432 45566655 4455666554333345666
Q ss_pred ceeeeeeeecccccccchhhhhcccccccccccCCCCCccccccCCCCCCCCCCCcCCCcceeeeeeecccccCCCC-CC
Q 000722 608 GALLGVAYRTSRRISPIAATAISTIQSMPLSGFGSSGLSSFTTFDDGFSSQKSPAEAAPQNFQLYSWETFQPVGGLL-PQ 686 (1331)
Q Consensus 608 g~llgv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ydw~~~~~~~~~~-~~ 686 (1331)
|. |-.... .++.+.+||.++.+.++.+. ..
T Consensus 461 g~--g~lll~-----------------------------------------------~~~~v~lfdvQq~~~~~si~~s~ 491 (1202)
T KOG0292|consen 461 GT--GNLLLR-----------------------------------------------SPDSVTLFDVQQKKKVGSIKVSK 491 (1202)
T ss_pred cC--ccEEEE-----------------------------------------------cCCeEEEEEeecceEEEEEecCc
Confidence 65 222221 24779999999999999964 78
Q ss_pred ccccccccchhhhhhcceeeEEEeeccccccccccccccccccceeeeeeeee-eccceEEEEEEeccceeeeecchhhh
Q 000722 687 PEWTAWDQTVEYCAFAYQHYIVISSLCPQYRYLGDVAIPYATGAVWHRRQLFV-VTPTTIECVFVDAGVAAIDVETMKMK 765 (1331)
Q Consensus 687 ~~~~~w~~~~~~~al~~~~~i~i~~~~~~~~~~~~~~~~~~~s~~w~~~~~f~-~t~~~i~~~~~~~~~~~~~~~~~~~~ 765 (1331)
+++|+||.+++++||++||+|+|+++++++.|..+|+|+ +|||+||++++|+ ||.|||||+|.+
T Consensus 492 vkyvvws~dm~~vAll~Kh~i~i~~kkL~l~~sihEtir-iksgawde~gVfiYtT~nHikYal~~-------------- 556 (1202)
T KOG0292|consen 492 VKYVVWSNDMSRVALLSKHTITIADKKLELLCSIHETIR-IKSGAWDEDGVFIYTTLNHIKYALEN-------------- 556 (1202)
T ss_pred eeEEEEcCccchhhhcccceEEEEecchhheecchheeE-eeeceeccCceEEEEehhhhhhhhcc--------------
Confidence 999999999999999999999999999999998899999 9999999998888 999999999987
Q ss_pred HHhhHHHHHhhHHhhcCCeEEEEecccchhhccccccCCcceeeeeecccccCCCCCCcccCCCcccccCCCCCCcchhh
Q 000722 766 EEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRLASFQHAASVPPFLTMPKQTKVEGDDSMMPKDIE 845 (1331)
Q Consensus 766 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 845 (1331)
T Consensus 557 -------------------------------------------------------------------------------- 556 (1202)
T KOG0292|consen 557 -------------------------------------------------------------------------------- 556 (1202)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hcccceEEEcCCceEEEEeecCCCccCCCCCeEEEeeeccEEeeehhhhhhhhcccCCCcceeeeecccCCchhhhHHHh
Q 000722 846 ERKVNEIAVGGGGVAVAVTRFPTEQKRPIGPLVVVGVKDGVLWLIDRYMCAHALSLSHPGIRCRCLAAYGDSVSAVKWAS 925 (1331)
Q Consensus 846 ~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~ 925 (1331)
|++++|++|| .|||++.+++|++||+||++.+.++.||.++|+||.|+++++||+++.+++
T Consensus 557 ------------GD~GIikTLd-------~~iyitkv~gn~V~cl~rd~~~~~~~IDptEy~FKlALi~k~ydeVl~lI~ 617 (1202)
T KOG0292|consen 557 ------------GDSGIIKTLD-------KPIYITKVKGNKVFCLNRDGEIECLTIDPTEYRFKLALLNKKYDEVLHLIK 617 (1202)
T ss_pred ------------CCcceEEecc-------cceEEEEeeCCEEEEEecCCCeEEEeechHHHHHHHHHHhhhhHHHHHHHH
Confidence 3447899999 999999999999999999999999999999999999999999999999999
Q ss_pred h---hccccchhHHHHHhhcccccccccCCCcccceeeeeccccchHHHHHHhhhhcccccccCCCCCCCChhhhccccc
Q 000722 926 R---LGREHHDDLAQFMLGMGYATEALHLPGISKRLEFDLAMQSNDLKRALQCLITMSNSRDIGQDHPGLDLNDILTLTT 1002 (1331)
Q Consensus 926 ~---i~~~~~~~~a~fl~~~g~~e~Al~~~~ds~~~~f~la~~~g~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1002 (1331)
+ +|+. ++.||+++||||.||||+.| +++||+|||+||||++|+|.| ++++.+
T Consensus 618 ns~LvGqa----iIaYLqKkgypeiAL~FVkD-~~tRF~LaLe~gnle~ale~a------kkldd~-------------- 672 (1202)
T KOG0292|consen 618 NSNLVGQA----IIAYLQKKGYPEIALHFVKD-ERTRFELALECGNLEVALEAA------KKLDDK-------------- 672 (1202)
T ss_pred hcCcccHH----HHHHHHhcCCcceeeeeecC-cchheeeehhcCCHHHHHHHH------HhcCcH--------------
Confidence 8 6665 99999999999999999999 899999999999999999999 888887
Q ss_pred chhhHHHHHHHHHHHHHHHHhhhhccccccchHHHHHHHHHHHhcccccccccccccccchhhhcccccchhhhhhhHHH
Q 000722 1003 KKENIVEAVQGIVKFAKEFLDLIDAADATGQANIAREALKRLAAAGSVKGALQGHELRGLALRLANHGELTRLSGLVTNL 1082 (1331)
Q Consensus 1003 ~~~~~~~~~~~~~~~~~~w~~l~~~al~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~ll~~~~g~~~~l~~l~~~~ 1082 (1331)
..|.+||+.||+|||++|||+|||+.| +|++|+|||.++||.++|+||+++|
T Consensus 673 ----------------d~w~rLge~Al~qgn~~IaEm~yQ~~k------------nfekLsfLYliTgn~eKL~Km~~ia 724 (1202)
T KOG0292|consen 673 ----------------DVWERLGEEALRQGNHQIAEMCYQRTK------------NFEKLSFLYLITGNLEKLSKMMKIA 724 (1202)
T ss_pred ----------------HHHHHHHHHHHHhcchHHHHHHHHHhh------------hhhheeEEEEEeCCHHHHHHHHHHH
Confidence 899999999999999999999999996 5569999999999999999999999
Q ss_pred HhhccChhhhhhhh-hcCchHHHHHHhhhhhhHHHHHHhhhccCCCcHHHHHHHHHHHHhhhccCCCCccchhHHHHHhc
Q 000722 1083 ISLGLGREAAFSAA-ILGDNALMEKAWQDTGMLAEAVLHAHAHGRPSLKNLVEAWNKMLQKEVDHTPTAKTDAAAAFLAS 1161 (1331)
Q Consensus 1083 ~~~~~~~~~af~~~-~lgd~~~~~~~l~~~~~~~~A~~~A~~~~~~~~~~~~~~w~~~l~~~~~~~~~~~~~~~~~~~~~ 1161 (1331)
+.+++. ..-|+.+ ||||+++++++|.+.|++|+||+.|++|| +.+..++..+++.++..+.|.
T Consensus 725 e~r~D~-~~~~qnalYl~dv~ervkIl~n~g~~~laylta~~~G---~~~~ae~l~ee~~~~~~~lP~------------ 788 (1202)
T KOG0292|consen 725 EIRNDA-TGQFQNALYLGDVKERVKILENGGQLPLAYLTAAAHG---LEDQAEKLGEELEKQVPSLPE------------ 788 (1202)
T ss_pred Hhhhhh-HHHHHHHHHhccHHHHHHHHHhcCcccHHHHHHhhcC---cHHHHHHHHHhhccccCCCCC------------
Confidence 999999 8889966 99999999999999999999999999999 889999999999999999998
Q ss_pred ccCccccchhhcCCCCCceecC
Q 000722 1162 LEEPKLTSLAEAGKKPPIEILP 1183 (1331)
Q Consensus 1162 ~~~~~~~~~~~~~~~~~~~~~~ 1183 (1331)
.+|++..|++|.|++|.|=-|
T Consensus 789 -~~~~a~ll~pP~p~~~l~nwP 809 (1202)
T KOG0292|consen 789 -VDPNASLLQPPVPIMPLENWP 809 (1202)
T ss_pred -CCCcccccCCCCccccccCCc
Confidence 679999999999999999555
No 3
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=100.00 E-value=7.2e-72 Score=666.13 Aligned_cols=396 Identities=24% Similarity=0.333 Sum_probs=300.0
Q ss_pred EEEEeeCCcEEEEEcCCCceeeEEeecceeEeecCcceeeehhcchhhHHHhhhccCCCcccccCCCCchHHHHHHHHHH
Q 000722 483 ILSVSSSGKYLAVVWPDIPYFSVYKVSDWSIVDSGSARLLAWDTCRDRFAILESALTPRLPIIPKGGSSRKAKEAAAAAA 562 (1331)
Q Consensus 483 ~ls~SpdGrylaVv~~~~g~y~Iy~i~~~~~i~~G~~~~~aWs~~~~~fAvl~~~~~~~i~~~~k~~~~~k~ke~~~aaa 562 (1331)
.++++|+||+++|+ ++|+|.||+...|+.+.+|.+.+++|.+ +++|||++++.
T Consensus 37 ~ls~npngr~v~V~--g~geY~iyt~~~~r~k~~G~g~~~vw~~-~n~yAv~~~~~------------------------ 89 (443)
T PF04053_consen 37 SLSHNPNGRFVLVC--GDGEYEIYTALAWRNKAFGSGLSFVWSS-RNRYAVLESSS------------------------ 89 (443)
T ss_dssp EEEE-TTSSEEEEE--ETTEEEEEETTTTEEEEEEE-SEEEE-T-SSEEEEE-TTS------------------------
T ss_pred eEEECCCCCEEEEE--cCCEEEEEEccCCcccccCceeEEEEec-CccEEEEECCC------------------------
Confidence 79999999999885 9999999999999999999999999987 89999998631
Q ss_pred HHHHHHHhhcccceEEE-EEEecCCccceeeeccCCCCCceeeeccceeeeeeeecccccccchhhhhcccccccccccC
Q 000722 563 AAQAAAASAASSATVQA-RILLDDGTSNILMRSIGGSSEPVIGLHGGALLGVAYRTSRRISPIAATAISTIQSMPLSGFG 641 (1331)
Q Consensus 563 ~a~aaa~aaa~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~llgv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 641 (1331)
++.| |.+. +...++++.+ ..++.+|||.||++...
T Consensus 90 -------------~I~I~kn~~-----~~~~k~i~~~-~~~~~If~G~LL~~~~~------------------------- 125 (443)
T PF04053_consen 90 -------------TIKIYKNFK-----NEVVKSIKLP-FSVEKIFGGNLLGVKSS------------------------- 125 (443)
T ss_dssp --------------EEEEETTE-----E-TT-----S-S-EEEEE-SSSEEEEET-------------------------
T ss_pred -------------eEEEEEcCc-----cccceEEcCC-cccceEEcCcEEEEECC-------------------------
Confidence 2222 2222 1222344433 45788999999998755
Q ss_pred CCCCccccccCCCCCCCCCCCcCCCcceeeeeeecccccCCCCCCc-cccccccchhhhhhcceeeEEEeeccccccccc
Q 000722 642 SSGLSSFTTFDDGFSSQKSPAEAAPQNFQLYSWETFQPVGGLLPQP-EWTAWDQTVEYCAFAYQHYIVISSLCPQYRYLG 720 (1331)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ydw~~~~~~~~~~~~~-~~~~w~~~~~~~al~~~~~i~i~~~~~~~~~~~ 720 (1331)
++++||||++++.|+++...+ ++|+|++++++||++++++|||++++.+.-..
T Consensus 126 -------------------------~~i~~yDw~~~~~i~~i~v~~vk~V~Ws~~g~~val~t~~~i~il~~~~~~~~~- 179 (443)
T PF04053_consen 126 -------------------------DFICFYDWETGKLIRRIDVSAVKYVIWSDDGELVALVTKDSIYILKYNLEAVAA- 179 (443)
T ss_dssp -------------------------TEEEEE-TTT--EEEEESS-E-EEEEE-TTSSEEEEE-S-SEEEEEE-HHHHHH-
T ss_pred -------------------------CCEEEEEhhHcceeeEEecCCCcEEEEECCCCEEEEEeCCeEEEEEecchhccc-
Confidence 359999999999999999885 99999999999999999999999997541000
Q ss_pred cccccccccceeeeeeeeeeccceEEEEEEeccceeeeecchhhhHHhhHHHHHhhHHhhcCCeEEEEecccchhhcccc
Q 000722 721 DVAIPYATGAVWHRRQLFVVTPTTIECVFVDAGVAAIDVETMKMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRI 800 (1331)
Q Consensus 721 ~~~~~~~~s~~w~~~~~f~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 (1331)
..++|++.+|.. .+|+ .+.+++++|+||||+||..
T Consensus 180 -------------------~~~~g~e~~f~~-------------~~E~---~~~IkSg~W~~d~fiYtT~---------- 214 (443)
T PF04053_consen 180 -------------------IPEEGVEDAFEL-------------IHEI---SERIKSGCWVEDCFIYTTS---------- 214 (443)
T ss_dssp -------------------BTTTB-GGGEEE-------------EEEE----S--SEEEEETTEEEEE-T----------
T ss_pred -------------------ccccCchhceEE-------------EEEe---cceeEEEEEEcCEEEEEcC----------
Confidence 112233322221 0110 1235566666666666654
Q ss_pred ccCCcceeeeeecccccCCCCCCcccCCCcccccCCCCCCcchhhhcccceEEEcCCceEEEEeecCCCccCCCCCeEEE
Q 000722 801 KLRPPMLQVVRLASFQHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVAVTRFPTEQKRPIGPLVVV 880 (1331)
Q Consensus 801 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~~~ 880 (1331)
++|.|++||++++|+||| +|+||+
T Consensus 215 -------------------------------------------------~~lkYl~~Ge~~~i~~ld-------~~~yll 238 (443)
T PF04053_consen 215 -------------------------------------------------NHLKYLVNGETGIIAHLD-------KPLYLL 238 (443)
T ss_dssp -------------------------------------------------TEEEEEETTEEEEEEE-S-------S--EEE
T ss_pred -------------------------------------------------CeEEEEEcCCcceEEEcC-------CceEEE
Confidence 134466678999999999 999999
Q ss_pred eeec--cEEeeehhhhhhhhcccCCCcceeeeecccCCchh------hhHHHhhhccccchhHHHHHhhcccccccccCC
Q 000722 881 GVKD--GVLWLIDRYMCAHALSLSHPGIRCRCLAAYGDSVS------AVKWASRLGREHHDDLAQFMLGMGYATEALHLP 952 (1331)
Q Consensus 881 g~~~--~~~~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~------a~~~~~~i~~~~~~~~a~fl~~~g~~e~Al~~~ 952 (1331)
||.. ++||++||++++.+++|++++++||++|++||+++ +.+++++||+++++++|+||+++||+|+||+++
T Consensus 239 gy~~~~~~ly~~Dr~~~v~~~~ld~~~~~fk~av~~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~ 318 (443)
T PF04053_consen 239 GYLPKENRLYLIDRDGNVISYELDLSELEFKTAVLRGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKGYPELALQFV 318 (443)
T ss_dssp EEETTTTEEEEE-TT--EEEEE--HHHHHHHHHHHTT-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHS
T ss_pred EEEccCCEEEEEECCCCEEEEEECHHHHHHHHHHHcCChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCCCHHHHHhhc
Confidence 9966 99999999999999999999999999999999999 366777799999999999999999999999999
Q ss_pred CcccceeeeeccccchHHHHHHhhhhcccccccCCCCCCCChhhhcccccchhhHHHHHHHHHHHHHHHHhhhhcccccc
Q 000722 953 GISKRLEFDLAMQSNDLKRALQCLITMSNSRDIGQDHPGLDLNDILTLTTKKENIVEAVQGIVKFAKEFLDLIDAADATG 1032 (1331)
Q Consensus 953 ~ds~~~~f~la~~~g~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~~~al~~g 1032 (1331)
+| +++||||||+||+|+.|+++| ++++++ .+|++||++||++|
T Consensus 319 ~D-~~~rFeLAl~lg~L~~A~~~a------~~~~~~------------------------------~~W~~Lg~~AL~~g 361 (443)
T PF04053_consen 319 TD-PDHRFELALQLGNLDIALEIA------KELDDP------------------------------EKWKQLGDEALRQG 361 (443)
T ss_dssp S--HHHHHHHHHHCT-HHHHHHHC------CCCSTH------------------------------HHHHHHHHHHHHTT
T ss_pred CC-hHHHhHHHHhcCCHHHHHHHH------HhcCcH------------------------------HHHHHHHHHHHHcC
Confidence 99 899999999999999999999 777776 89999999999999
Q ss_pred chHHHHHHHHHHHhcccccccccccccccchhhhcccccchhhhhhhHHHHhhccChhhhhhhh-hcCchHHHHHHhhhh
Q 000722 1033 QANIAREALKRLAAAGSVKGALQGHELRGLALRLANHGELTRLSGLVTNLISLGLGREAAFSAA-ILGDNALMEKAWQDT 1111 (1331)
Q Consensus 1033 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~ll~~~~g~~~~l~~l~~~~~~~~~~~~~af~~~-~lgd~~~~~~~l~~~ 1111 (1331)
|+++||+||+++ + |+++|+|||+++||+++|+||+++|.++|+. |+||+|+ ++||+++|+++|+++
T Consensus 362 ~~~lAe~c~~k~---~---------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~~~-n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 362 NIELAEECYQKA---K---------DFSGLLLLYSSTGDREKLSKLAKIAEERGDI-NIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp BHHHHHHHHHHC---T----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-H-HHHHHHHHHHT-HHHHHHHHHHT
T ss_pred CHHHHHHHHHhh---c---------CccccHHHHHHhCCHHHHHHHHHHHHHccCH-HHHHHHHHHcCCHHHHHHHHHHc
Confidence 999999999999 5 8899999999999999999999999999999 9999998 999999999999999
Q ss_pred hhHHHHHHhhhccCC
Q 000722 1112 GMLAEAVLHAHAHGR 1126 (1331)
Q Consensus 1112 ~~~~~A~~~A~~~~~ 1126 (1331)
||+|||++|||||||
T Consensus 429 ~~~~~A~~~A~ty~~ 443 (443)
T PF04053_consen 429 GRLPEAALFARTYGP 443 (443)
T ss_dssp T-HHHHHHHHHHTT-
T ss_pred CCchHHHHHHHhcCC
Confidence 999999999999996
No 4
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=8.7e-40 Score=359.20 Aligned_cols=326 Identities=21% Similarity=0.305 Sum_probs=280.6
Q ss_pred ccccCCCcEEEEEeecCCceeEeecCCCceeeeccccceEEeeeccCCcccchhhh--hhhhhhcccccccCCCCccccc
Q 000722 6 AFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVG--AKLEKLAEGELEHKGKPTEAMR 83 (1331)
Q Consensus 6 ~L~gHs~~V~~lafSPdg~~LaSgs~DGtV~VWD~~tg~~i~s~~~~~~~~i~~vs--pdg~~Lasgs~d~~g~~l~~l~ 83 (1331)
.+.||...|.|+.|+|+|..|+||+.|.++|+||..|...+.+.+ +|.+.+.+++ ||++.|++++
T Consensus 110 S~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~K-gH~~WVlcvawsPDgk~iASG~------------ 176 (480)
T KOG0271|consen 110 SIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCK-GHKNWVLCVAWSPDGKKIASGS------------ 176 (480)
T ss_pred ccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeec-CCccEEEEEEECCCcchhhccc------------
Confidence 578999999999999999999999999999999999999999998 6789999988 9999999986
Q ss_pred CCceeEEeeecchhhHHHHhhhccccccCCcccccccccccCCCCCC-----CCceEEEEEeeccee-EeeeecccCCCC
Q 000722 84 GGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPST-----KGRHFLVICCVNKAI-FLDLVTMRGRDI 157 (1331)
Q Consensus 84 gg~V~sVaf~DgtIrvWdl~tg~~l~~~~~~~~~~~~~~V~svafsp-----dg~~lLasgs~d~iI-vwDl~t~~~~~i 157 (1331)
.||+|++||..+++++. ..+.+| ...|++++|.| ..+ .|++++.|+.+ +||...+. ++
T Consensus 177 ---------~dg~I~lwdpktg~~~g---~~l~gH-~K~It~Lawep~hl~p~~r-~las~skDg~vrIWd~~~~~--~~ 240 (480)
T KOG0271|consen 177 ---------KDGSIRLWDPKTGQQIG---RALRGH-KKWITALAWEPLHLVPPCR-RLASSSKDGSVRIWDTKLGT--CV 240 (480)
T ss_pred ---------cCCeEEEecCCCCCccc---ccccCc-ccceeEEeecccccCCCcc-ceecccCCCCEEEEEccCce--EE
Confidence 68999999999988763 445555 78899999976 344 88999988877 89988754 56
Q ss_pred CccccccccceeeehhhcccCCCcceEeecCCCceeeeeehhhheeehhhcCCCccchhhhhHh--------hhcccc--
Q 000722 158 PKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTF--------MASSGE-- 227 (1331)
Q Consensus 158 ~~~~~h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~~~v~~~~~gH~~~V~~vawf--------~~spdg-- 227 (1331)
..+.+|...|+|+.| .-..+|++||.|++|++|+...|++.+.+. ||.+.|+.++.- .|.+.+
T Consensus 241 ~~lsgHT~~VTCvrw------GG~gliySgS~DrtIkvw~a~dG~~~r~lk-GHahwvN~lalsTdy~LRtgaf~~t~~~ 313 (480)
T KOG0271|consen 241 RTLSGHTASVTCVRW------GGEGLIYSGSQDRTIKVWRALDGKLCRELK-GHAHWVNHLALSTDYVLRTGAFDHTGRK 313 (480)
T ss_pred EEeccCccceEEEEE------cCCceEEecCCCceEEEEEccchhHHHhhc-ccchheeeeeccchhhhhcccccccccc
Confidence 678999999999999 234699999999999999999999999998 999999988621 123333
Q ss_pred -----------------------EEEeecCCCceEEEEeccCCCccccccccceeeeccCcEEEEEechhccCCCcEEEe
Q 000722 228 -----------------------ALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITI 284 (1331)
Q Consensus 228 -----------------------~lLaSgs~DgtIrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSg 284 (1331)
..|++||.|.++.+|+....+ .++..+.+|..-|+.+.|+| |+++|+++
T Consensus 314 ~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~k-----kpi~rmtgHq~lVn~V~fSP---d~r~IASa 385 (480)
T KOG0271|consen 314 PKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSK-----KPITRMTGHQALVNHVSFSP---DGRYIASA 385 (480)
T ss_pred CCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccc-----cchhhhhchhhheeeEEECC---CccEEEEe
Confidence 359999999999999976544 24445789999999999999 99999999
Q ss_pred ecCceeEeeeccchhhhcccCCCCcccccccccccCCCCCCCcee-eeeecce--eeeeecCccccccccccccccCCCc
Q 000722 285 GADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDIL-TCVKDSH--IWAIEHPTYSALTRPLCELSSLVPP 361 (1331)
Q Consensus 285 s~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg~lL-a~s~Dg~--IWdl~~~~~~~l~~~~~~~~~~~~~ 361 (1331)
|.|+.|++||.++|+.+.+ +++|-..|+.++|+.|.++| +|+.|.+ +|++++.. ..
T Consensus 386 SFDkSVkLW~g~tGk~las------fRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkK---------------l~ 444 (480)
T KOG0271|consen 386 SFDKSVKLWDGRTGKFLAS------FRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKK---------------LK 444 (480)
T ss_pred ecccceeeeeCCCcchhhh------hhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeee---------------ec
Confidence 9999999999999998877 79999999999999999966 7888886 89999752 24
Q ss_pred cccccccceEEEEEEeccCCccEeeecceeEEEEeecC
Q 000722 362 QVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFD 399 (1331)
Q Consensus 362 ~~l~~h~~~~I~~la~sp~~~~lLAtGs~DG~Il~VWD 399 (1331)
..+.+|.+ .|++++|+| ++..+++|+.|.++ ++|.
T Consensus 445 ~DLpGh~D-EVf~vDwsp-DG~rV~sggkdkv~-~lw~ 479 (480)
T KOG0271|consen 445 QDLPGHAD-EVFAVDWSP-DGQRVASGGKDKVL-RLWR 479 (480)
T ss_pred ccCCCCCc-eEEEEEecC-CCceeecCCCceEE-Eeec
Confidence 56778999 999999999 57779999999998 8995
No 5
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.4e-33 Score=302.51 Aligned_cols=287 Identities=20% Similarity=0.245 Sum_probs=243.6
Q ss_pred ccccccCCCcEEEEEeecCCceeEeecCCCceeeeccccceEEeeeccCCcccchhhhhhhhhhcccccccCCCCccccc
Q 000722 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMR 83 (1331)
Q Consensus 4 l~~L~gHs~~V~~lafSPdg~~LaSgs~DGtV~VWD~~tg~~i~s~~~~~~~~i~~vspdg~~Lasgs~d~~g~~l~~l~ 83 (1331)
-++|+||.++|.++.|++|.++|++++.||.+.|||.-|...++.+...
T Consensus 48 rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~------------------------------- 96 (343)
T KOG0286|consen 48 RRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLP------------------------------- 96 (343)
T ss_pred EEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecC-------------------------------
Confidence 4789999999999999999999999999999999998876655555411
Q ss_pred CCceeEEeeecchhhHHHHhhhccccccCCcccccccccccCCCCCCCCceEEEEEeeccee-Eeeeeccc----CCCCC
Q 000722 84 GGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMR----GRDIP 158 (1331)
Q Consensus 84 gg~V~sVaf~DgtIrvWdl~tg~~l~~~~~~~~~~~~~~V~svafspdg~~lLasgs~d~iI-vwDl~t~~----~~~i~ 158 (1331)
...|..++|+|.|+ ++++|+.|... +|++.+.+ .....
T Consensus 97 ------------------------------------s~WVMtCA~sPSg~-~VAcGGLdN~Csiy~ls~~d~~g~~~v~r 139 (343)
T KOG0286|consen 97 ------------------------------------SSWVMTCAYSPSGN-FVACGGLDNKCSIYPLSTRDAEGNVRVSR 139 (343)
T ss_pred ------------------------------------ceeEEEEEECCCCC-eEEecCcCceeEEEecccccccccceeee
Confidence 23455677899998 99999988877 77877542 12334
Q ss_pred ccccccccceeeehhhcccCCCcceEeecCCCceeeeeehhhheeehhhcCCCccchhhhhHhhhcc-ccEEEeecCCCc
Q 000722 159 KQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASS-GEALLVSGGSDG 237 (1331)
Q Consensus 159 ~~~~h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~~~v~~~~~gH~~~V~~vawf~~sp-dg~lLaSgs~Dg 237 (1331)
.+.+|.+++.|+.|. +...|+++|.|.+.-+||+++++.+..|. ||.+.|+++. ++| +++.|+||+.|+
T Consensus 140 ~l~gHtgylScC~f~------dD~~ilT~SGD~TCalWDie~g~~~~~f~-GH~gDV~sls---l~p~~~ntFvSg~cD~ 209 (343)
T KOG0286|consen 140 ELAGHTGYLSCCRFL------DDNHILTGSGDMTCALWDIETGQQTQVFH-GHTGDVMSLS---LSPSDGNTFVSGGCDK 209 (343)
T ss_pred eecCccceeEEEEEc------CCCceEecCCCceEEEEEcccceEEEEec-CCcccEEEEe---cCCCCCCeEEeccccc
Confidence 578999999999993 56789999999999999999999999998 9999999998 777 999999999999
Q ss_pred eEEEEeccCCCccccccccceeeeccCcEEEEEechhccCCCcEEEeecCceeEeeeccchhhhcccCCCCccccccccc
Q 000722 238 LLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVAS 317 (1331)
Q Consensus 238 tIrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V 317 (1331)
+.++||++.+.+.+. |.+|+..|+++.|+| +|.-|++|++|+++|+||++..+.+..+.. .....+|
T Consensus 210 ~aklWD~R~~~c~qt------F~ghesDINsv~ffP---~G~afatGSDD~tcRlyDlRaD~~~a~ys~----~~~~~gi 276 (343)
T KOG0286|consen 210 SAKLWDVRSGQCVQT------FEGHESDINSVRFFP---SGDAFATGSDDATCRLYDLRADQELAVYSH----DSIICGI 276 (343)
T ss_pred ceeeeeccCcceeEe------ecccccccceEEEcc---CCCeeeecCCCceeEEEeecCCcEEeeecc----CcccCCc
Confidence 999999999987665 799999999999999 899999999999999999999887776542 2334578
Q ss_pred ccCCCCCCCcee-eeeecce--eeeeecCccccccccccccccCCCccccccccceEEEEEEeccCCccEeeecceeEEE
Q 000722 318 WCHPRAPNLDIL-TCVKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVI 394 (1331)
Q Consensus 318 ~svafspdg~lL-a~s~Dg~--IWdl~~~~~~~l~~~~~~~~~~~~~~~l~~h~~~~I~~la~sp~~~~lLAtGs~DG~I 394 (1331)
++++||..|++| +|..|.+ +||.-.+ ..+..+.+|.+ +|+|+..+| ++..+++|+.|..+
T Consensus 277 tSv~FS~SGRlLfagy~d~~c~vWDtlk~---------------e~vg~L~GHeN-RvScl~~s~-DG~av~TgSWDs~l 339 (343)
T KOG0286|consen 277 TSVAFSKSGRLLFAGYDDFTCNVWDTLKG---------------ERVGVLAGHEN-RVSCLGVSP-DGMAVATGSWDSTL 339 (343)
T ss_pred eeEEEcccccEEEeeecCCceeEeecccc---------------ceEEEeeccCC-eeEEEEECC-CCcEEEecchhHhe
Confidence 899999999988 5556654 8998654 23557789999 999999999 68889999999998
Q ss_pred EeecC
Q 000722 395 ISEFD 399 (1331)
Q Consensus 395 l~VWD 399 (1331)
|||.
T Consensus 340 -riW~ 343 (343)
T KOG0286|consen 340 -RIWA 343 (343)
T ss_pred -eecC
Confidence 9994
No 6
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.9e-34 Score=314.05 Aligned_cols=286 Identities=17% Similarity=0.211 Sum_probs=239.1
Q ss_pred ccccccCCCcEEEEEeecCCceeEeecCCCceeeeccccceEEeeeccCCcccchhhh-------hhhhhhcccccccCC
Q 000722 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVG-------AKLEKLAEGELEHKG 76 (1331)
Q Consensus 4 l~~L~gHs~~V~~lafSPdg~~LaSgs~DGtV~VWD~~tg~~i~s~~~~~~~~i~~vs-------pdg~~Lasgs~d~~g 76 (1331)
+.+.+||..+|.|++|+|||++||+|+.||+|++||..+|+++..--.+|...|..++ +..++|++++
T Consensus 150 ~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~s----- 224 (480)
T KOG0271|consen 150 LFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSS----- 224 (480)
T ss_pred ceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceeccc-----
Confidence 5678999999999999999999999999999999999999887665557766766665 3344454443
Q ss_pred CCcccccCCceeEEeeecchhhHHHHhhhccccccCCcccccccccccCCCCCCCCceEEEEEeeccee-EeeeecccCC
Q 000722 77 KPTEAMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGR 155 (1331)
Q Consensus 77 ~~l~~l~gg~V~sVaf~DgtIrvWdl~tg~~l~~~~~~~~~~~~~~V~svafspdg~~lLasgs~d~iI-vwDl~t~~~~ 155 (1331)
.||.|+|||+..++++ ....+| ...|+|++|--+| ++.+|+.|+.| +|+...+.
T Consensus 225 ----------------kDg~vrIWd~~~~~~~----~~lsgH-T~~VTCvrwGG~g--liySgS~DrtIkvw~a~dG~-- 279 (480)
T KOG0271|consen 225 ----------------KDGSVRIWDTKLGTCV----RTLSGH-TASVTCVRWGGEG--LIYSGSQDRTIKVWRALDGK-- 279 (480)
T ss_pred ----------------CCCCEEEEEccCceEE----EEeccC-ccceEEEEEcCCc--eEEecCCCceEEEEEccchh--
Confidence 6999999999998886 455566 8899999998766 99999999999 88777644
Q ss_pred CCCccccccccceeeehhhc------ccCCC-------------------------cceEeecCCCceeeeeehhh-hee
Q 000722 156 DIPKQELDNKSLVCMEFLSR------SAVGD-------------------------VPLVAFGSSDGVIRVLSMIS-WKL 203 (1331)
Q Consensus 156 ~i~~~~~h~~~V~~Vaf~P~------s~Spd-------------------------g~~LasGs~DGtIrlWDl~t-~~~ 203 (1331)
....+.+|...|+.++.+.. .+.|. +..+++||+|.++.+|+... .++
T Consensus 280 ~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkp 359 (480)
T KOG0271|consen 280 LCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKP 359 (480)
T ss_pred HHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccc
Confidence 56678999999999887511 11222 34599999999999999865 457
Q ss_pred ehhhcCCCccchhhhhHhhhccccEEEeecCCCceEEEEeccCCCccccccccceeeeccCcEEEEEechhccCCCcEEE
Q 000722 204 VRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLIT 283 (1331)
Q Consensus 204 v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaS 283 (1331)
+..+. ||..-|+.+. |+||+.+++++|.|..|++||.++|+.+.. |.||-..|..++|+. |.++|++
T Consensus 360 i~rmt-gHq~lVn~V~---fSPd~r~IASaSFDkSVkLW~g~tGk~las------fRGHv~~VYqvawsa---DsRLlVS 426 (480)
T KOG0271|consen 360 ITRMT-GHQALVNHVS---FSPDGRYIASASFDKSVKLWDGRTGKFLAS------FRGHVAAVYQVAWSA---DSRLLVS 426 (480)
T ss_pred hhhhh-chhhheeeEE---ECCCccEEEEeecccceeeeeCCCcchhhh------hhhccceeEEEEecc---CccEEEE
Confidence 77777 9999999998 899999999999999999999999996654 799999999999998 8999999
Q ss_pred eecCceeEeeeccchhhhcccCCCCcccccccccccCCCCCCCceee-eeecce--ee
Q 000722 284 IGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDILT-CVKDSH--IW 338 (1331)
Q Consensus 284 gs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg~lLa-~s~Dg~--IW 338 (1331)
||.|.++++||+++.+.... +.+|.+.|.++.|+|||+.++ ++.|.- +|
T Consensus 427 ~SkDsTLKvw~V~tkKl~~D------LpGh~DEVf~vDwspDG~rV~sggkdkv~~lw 478 (480)
T KOG0271|consen 427 GSKDSTLKVWDVRTKKLKQD------LPGHADEVFAVDWSPDGQRVASGGKDKVLRLW 478 (480)
T ss_pred cCCCceEEEEEeeeeeeccc------CCCCCceEEEEEecCCCceeecCCCceEEEee
Confidence 99999999999998886655 899999999999999999775 555652 55
No 7
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=9.5e-33 Score=308.24 Aligned_cols=280 Identities=19% Similarity=0.212 Sum_probs=245.9
Q ss_pred cCCCcEEEEEeecCCceeEeecCCCceeeeccccceEEeeeccCCcccchhhhhhhhhhcccccccCCCCcccccCCcee
Q 000722 9 PTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRGGSVK 88 (1331)
Q Consensus 9 gHs~~V~~lafSPdg~~LaSgs~DGtV~VWD~~tg~~i~s~~~~~~~~i~~vspdg~~Lasgs~d~~g~~l~~l~gg~V~ 88 (1331)
|-+.+|..+.||+++..|+||+.+|.++||+..++..+.+|..|
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH------------------------------------ 216 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGH------------------------------------ 216 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEecc------------------------------------
Confidence 55789999999999999999999999999999998888888733
Q ss_pred EEeeecchhhHHHHhhhccccccCCcccccccccccCCCCCCC-CceEEEEEeeccee-EeeeecccCCCCCcccccccc
Q 000722 89 QVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTK-GRHFLVICCVNKAI-FLDLVTMRGRDIPKQELDNKS 166 (1331)
Q Consensus 89 sVaf~DgtIrvWdl~tg~~l~~~~~~~~~~~~~~V~svafspd-g~~lLasgs~d~iI-vwDl~t~~~~~i~~~~~h~~~ 166 (1331)
...|.++.|+|. ...-+++|+.|+.+ +|++.+. ..+..+.+|...
T Consensus 217 -------------------------------~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e--~~l~~l~gH~~R 263 (459)
T KOG0272|consen 217 -------------------------------TSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE--TPLQDLEGHLAR 263 (459)
T ss_pred -------------------------------ccceeeEEEccCCCccceeeeccCCceeeeccCCC--cchhhhhcchhh
Confidence 233455677887 34588999999988 7888763 356778999999
Q ss_pred ceeeehhhcccCCCcceEeecCCCceeeeeehhhheeehhhcCCCccchhhhhHhhhccccEEEeecCCCceEEEEeccC
Q 000722 167 LVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADH 246 (1331)
Q Consensus 167 V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrVWDl~t 246 (1331)
|..++| +|+|++|+|+|.|.+-|+||+.++..+.... ||...|.+++ |++||.+++||+.|..-||||+++
T Consensus 264 Vs~Vaf-----HPsG~~L~TasfD~tWRlWD~~tk~ElL~QE-GHs~~v~~ia---f~~DGSL~~tGGlD~~~RvWDlRt 334 (459)
T KOG0272|consen 264 VSRVAF-----HPSGKFLGTASFDSTWRLWDLETKSELLLQE-GHSKGVFSIA---FQPDGSLAATGGLDSLGRVWDLRT 334 (459)
T ss_pred heeeee-----cCCCceeeecccccchhhcccccchhhHhhc-ccccccceeE---ecCCCceeeccCccchhheeeccc
Confidence 999999 5689999999999999999999998887776 9999999998 899999999999999999999999
Q ss_pred CCccccccccceeeeccCcEEEEEechhccCCCcEEEeecCceeEeeeccchhhhcccCCCCcccccccccccCCCCC-C
Q 000722 247 GQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAP-N 325 (1331)
Q Consensus 247 g~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafsp-d 325 (1331)
|+++- .+.+|...|.+|+|+| +|..|+|||.|++++|||++..+++.+ +.+|.+-|+.|.|+| .
T Consensus 335 gr~im------~L~gH~k~I~~V~fsP---NGy~lATgs~Dnt~kVWDLR~r~~ly~------ipAH~nlVS~Vk~~p~~ 399 (459)
T KOG0272|consen 335 GRCIM------FLAGHIKEILSVAFSP---NGYHLATGSSDNTCKVWDLRMRSELYT------IPAHSNLVSQVKYSPQE 399 (459)
T ss_pred CcEEE------EecccccceeeEeECC---CceEEeecCCCCcEEEeeeccccccee------cccccchhhheEecccC
Confidence 98654 4799999999999999 899999999999999999998887666 799999999999999 4
Q ss_pred Ccee-eeeecce--eeeeecCccccccccccccccCCCccccccccceEEEEEEeccCCccEeeecceeEEEEeecC
Q 000722 326 LDIL-TCVKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFD 399 (1331)
Q Consensus 326 g~lL-a~s~Dg~--IWdl~~~~~~~l~~~~~~~~~~~~~~~l~~h~~~~I~~la~sp~~~~lLAtGs~DG~Il~VWD 399 (1331)
|.+| ++|.|++ ||...+. .++.++.+|.+ .|.+++.++ ++..+++++.|.++ ++|.
T Consensus 400 g~fL~TasyD~t~kiWs~~~~---------------~~~ksLaGHe~-kV~s~Dis~-d~~~i~t~s~DRT~-KLW~ 458 (459)
T KOG0272|consen 400 GYFLVTASYDNTVKIWSTRTW---------------SPLKSLAGHEG-KVISLDISP-DSQAIATSSFDRTI-KLWR 458 (459)
T ss_pred CeEEEEcccCcceeeecCCCc---------------ccchhhcCCcc-ceEEEEecc-CCceEEEeccCcee-eecc
Confidence 6655 8899996 8877653 56788999999 999999999 57789999999998 8995
No 8
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=4.2e-29 Score=296.77 Aligned_cols=415 Identities=15% Similarity=0.248 Sum_probs=279.2
Q ss_pred ccccccCCCcEEEEEeecCCceeEeecCCCceeeeccccceEEeeeccCCcccchhhhhhhhhhcccccccCCCCccccc
Q 000722 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMR 83 (1331)
Q Consensus 4 l~~L~gHs~~V~~lafSPdg~~LaSgs~DGtV~VWD~~tg~~i~s~~~~~~~~i~~vspdg~~Lasgs~d~~g~~l~~l~ 83 (1331)
+..|..|.++|..++|||++++++||+.|..|+||++.+.+|+.++.+|
T Consensus 44 i~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GH------------------------------- 92 (1202)
T KOG0292|consen 44 IDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGH------------------------------- 92 (1202)
T ss_pred HhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccc-------------------------------
Confidence 6778999999999999999999999999999999999999998888733
Q ss_pred CCceeEEeeecchhhHHHHhhhccccccCCcccccccccccCCCCCCCCceEEEEEeeccee-EeeeecccCCCCCcccc
Q 000722 84 GGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQEL 162 (1331)
Q Consensus 84 gg~V~sVaf~DgtIrvWdl~tg~~l~~~~~~~~~~~~~~V~svafspdg~~lLasgs~d~iI-vwDl~t~~~~~i~~~~~ 162 (1331)
.+.|+.+.||+.-+ |++++++|..| +|++++++ ++..+.+
T Consensus 93 ------------------------------------lDYVRt~~FHheyP-WIlSASDDQTIrIWNwqsr~--~iavltG 133 (1202)
T KOG0292|consen 93 ------------------------------------LDYVRTVFFHHEYP-WILSASDDQTIRIWNWQSRK--CIAVLTG 133 (1202)
T ss_pred ------------------------------------cceeEEeeccCCCc-eEEEccCCCeEEEEeccCCc--eEEEEec
Confidence 33456677899888 99999999998 89999855 6778999
Q ss_pred ccccceeeehhhcccCCCcceEeecCCCceeeeeehhhh----------------------------eeehhhcCCCccc
Q 000722 163 DNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISW----------------------------KLVRRYTGGHKGS 214 (1331)
Q Consensus 163 h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~----------------------------~~v~~~~~gH~~~ 214 (1331)
|+.+|+|..|| |...+++++|.|.+|||||+..- ..++.+..||...
T Consensus 134 HnHYVMcAqFh-----ptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRG 208 (1202)
T KOG0292|consen 134 HNHYVMCAQFH-----PTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRG 208 (1202)
T ss_pred CceEEEeeccC-----CccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccc
Confidence 99999999995 57889999999999999998521 1123334589999
Q ss_pred hhhhhHhhhccccEEEeecCCCceEEEEeccCCCccccccccceeeeccCcEEEEEechhccCCCcEEEeecCceeEeee
Q 000722 215 ISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWD 294 (1331)
Q Consensus 215 V~~vawf~~spdg~lLaSgs~DgtIrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWD 294 (1331)
|+.++ |+|.-.+|+||+.|+.|++|.++..+.. .+-++.||.+.|.++-||| ..++|+|.|.|++|||||
T Consensus 209 VNwaA---fhpTlpliVSG~DDRqVKlWrmnetKaW----EvDtcrgH~nnVssvlfhp---~q~lIlSnsEDksirVwD 278 (1202)
T KOG0292|consen 209 VNWAA---FHPTLPLIVSGADDRQVKLWRMNETKAW----EVDTCRGHYNNVSSVLFHP---HQDLILSNSEDKSIRVWD 278 (1202)
T ss_pred cceEE---ecCCcceEEecCCcceeeEEEeccccce----eehhhhcccCCcceEEecC---ccceeEecCCCccEEEEe
Confidence 99665 8999999999999999999999865531 3456799999999999999 789999999999999999
Q ss_pred ccchhhhcccCCCCcccccccccccCCCCCCCceeeeeecce--eeeeecC--ccccc--------ccccc--cccc--C
Q 000722 295 TVSFKELRRIKPVPKLACHSVASWCHPRAPNLDILTCVKDSH--IWAIEHP--TYSAL--------TRPLC--ELSS--L 358 (1331)
Q Consensus 295 l~t~~~l~~~~~~~~l~~H~~~V~svafspdg~lLa~s~Dg~--IWdl~~~--~~~~l--------~~~~~--~~~~--~ 358 (1331)
+...+.+++ ++...+..|.++.+|...+++++.|+- |+.+... .+... .+.+. ++.. .
T Consensus 279 m~kRt~v~t------frrendRFW~laahP~lNLfAAgHDsGm~VFkleRErpa~~v~~n~LfYvkd~~i~~~d~~t~~d 352 (1202)
T KOG0292|consen 279 MTKRTSVQT------FRRENDRFWILAAHPELNLFAAGHDSGMIVFKLERERPAYAVNGNGLFYVKDRFIRSYDLRTQKD 352 (1202)
T ss_pred cccccceee------eeccCCeEEEEEecCCcceeeeecCCceEEEEEcccCceEEEcCCEEEEEccceEEeeecccccc
Confidence 998888877 455667889999999999998888873 5655521 11000 01111 1111 1
Q ss_pred CCcccccccc--ceEEEEEEeccCCccEeeecceeEEEEeecCCCCCCCCCCC-CCCCCCCCcceEEEeeeeeeeeeeec
Q 000722 359 VPPQVLAHHK--KLRVYCMVAHSLQPHLVATGTNVGVIISEFDPRSLPAVAPL-PTPSGSRDHSAVYIVERELKLVNFQL 435 (1331)
Q Consensus 359 ~~~~~l~~h~--~~~I~~la~sp~~~~lLAtGs~DG~Il~VWDlr~~p~i~~~-~t~s~~~~~s~~~~~~~~l~l~~fq~ 435 (1331)
..+..+++.+ ..++.++.++|..+..+++.+.++....++.+.+.+....- .....+....++|+..+.+-+.+-.
T Consensus 353 ~~v~~lr~~g~~~~~~~smsYNpae~~vlics~~~n~~y~L~~ipk~~~~~~~~~~~~k~tG~~a~fvarNrfavl~k~- 431 (1202)
T KOG0292|consen 353 TAVASLRRPGTLWQPPRSLSYNPAENAVLICSNLDNGEYELVQIPKDSDGVSDGKDVKKGTGEGALFVARNRFAVLDKS- 431 (1202)
T ss_pred ceeEeccCCCcccCCcceeeeccccCeEEEEeccCCCeEEEEEecCcccccCCchhhhcCCCCceEEEEecceEEEEec-
Confidence 1222233322 12678888998655555554433332134444333222211 1111122344555544443221110
Q ss_pred ccCCCCCCCCCCCccccCCCCCCCCchhhHhhhccccccccCCCceeEEEEeeCCcEEEEEcCCCceeeEEeecceeEe-
Q 000722 436 SSAANPSLGNNGSLSETGRLKGDLPDALQIKQIKKHISTPVPHDSYSILSVSSSGKYLAVVWPDIPYFSVYKVSDWSIV- 514 (1331)
Q Consensus 436 ~~~~~~~lg~~~~ls~~G~~~~~~~e~l~v~~~~r~i~t~~~~e~~s~ls~SpdGrylaVv~~~~g~y~Iy~i~~~~~i- 514 (1331)
+.. +.. +.+.... .|.+..+.+ ...+-+..+|..+ +. +...+.+|++...+.+
T Consensus 432 ----~~~----v~i-----------k~l~N~v-tkkl~~~~~---~~~IF~ag~g~ll-l~--~~~~v~lfdvQq~~~~~ 485 (1202)
T KOG0292|consen 432 ----NEQ----VVI-----------KNLKNKV-TKKLLLPES---TDDIFYAGTGNLL-LR--SPDSVTLFDVQQKKKVG 485 (1202)
T ss_pred ----Ccc----eEE-----------ecccchh-hhcccCccc---ccceeeccCccEE-EE--cCCeEEEEEeecceEEE
Confidence 000 000 0000000 111222211 1134455666666 33 5567888888765443
Q ss_pred --ecCcceeeehhcchhhHHHhhh
Q 000722 515 --DSGSARLLAWDTCRDRFAILES 536 (1331)
Q Consensus 515 --~~G~~~~~aWs~~~~~fAvl~~ 536 (1331)
....+.-++||.+..+-|.+.+
T Consensus 486 si~~s~vkyvvws~dm~~vAll~K 509 (1202)
T KOG0292|consen 486 SIKVSKVKYVVWSNDMSRVALLSK 509 (1202)
T ss_pred EEecCceeEEEEcCccchhhhccc
Confidence 3455788999887777776643
No 9
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=1.5e-31 Score=298.70 Aligned_cols=244 Identities=23% Similarity=0.329 Sum_probs=218.1
Q ss_pred cccccccCCCcEEEEEeecC--CceeEeecCCCceeeeccccceEEeeeccCCcccchhhhhhhhhhcccccccCCCCcc
Q 000722 3 RLKAFRPTNDKIVKIQLHPT--HPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTE 80 (1331)
Q Consensus 3 ~l~~L~gHs~~V~~lafSPd--g~~LaSgs~DGtV~VWD~~tg~~i~s~~~~~~~~i~~vspdg~~Lasgs~d~~g~~l~ 80 (1331)
.+.+|+||+..|.++.|||. +.-||||+.||+|++|++.+..++..+..|
T Consensus 209 ~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH---------------------------- 260 (459)
T KOG0272|consen 209 LLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGH---------------------------- 260 (459)
T ss_pred eeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcc----------------------------
Confidence 36789999999999999998 569999999999999999876666666522
Q ss_pred cccCCceeEEeeecchhhHHHHhhhccccccCCcccccccccccCCCCCCCCceEEEEEeeccee-EeeeecccCCCCCc
Q 000722 81 AMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPK 159 (1331)
Q Consensus 81 ~l~gg~V~sVaf~DgtIrvWdl~tg~~l~~~~~~~~~~~~~~V~svafspdg~~lLasgs~d~iI-vwDl~t~~~~~i~~ 159 (1331)
...|..++|+|+|+ +|.+++.|... +||+.++. .+..
T Consensus 261 ---------------------------------------~~RVs~VafHPsG~-~L~TasfD~tWRlWD~~tk~--ElL~ 298 (459)
T KOG0272|consen 261 ---------------------------------------LARVSRVAFHPSGK-FLGTASFDSTWRLWDLETKS--ELLL 298 (459)
T ss_pred ---------------------------------------hhhheeeeecCCCc-eeeecccccchhhcccccch--hhHh
Confidence 33466788999998 99999999988 78999854 5667
Q ss_pred cccccccceeeehhhcccCCCcceEeecCCCceeeeeehhhheeehhhcCCCccchhhhhHhhhccccEEEeecCCCceE
Q 000722 160 QELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLL 239 (1331)
Q Consensus 160 ~~~h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtI 239 (1331)
..+|...|.+++| ++||.++++|+.|..-||||+++++++..+. ||...|.+|. |+|+|..|+|||.|+++
T Consensus 299 QEGHs~~v~~iaf-----~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~-gH~k~I~~V~---fsPNGy~lATgs~Dnt~ 369 (459)
T KOG0272|consen 299 QEGHSKGVFSIAF-----QPDGSLAATGGLDSLGRVWDLRTGRCIMFLA-GHIKEILSVA---FSPNGYHLATGSSDNTC 369 (459)
T ss_pred hcccccccceeEe-----cCCCceeeccCccchhheeecccCcEEEEec-ccccceeeEe---ECCCceEEeecCCCCcE
Confidence 8999999999999 6799999999999999999999999999887 8999999998 79999999999999999
Q ss_pred EEEeccCCCccccccccceeeeccCcEEEEEechhccCCCcEEEeecCceeEeeeccchhhhcccCCCCccccccccccc
Q 000722 240 ILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWC 319 (1331)
Q Consensus 240 rVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~s 319 (1331)
+|||++..+. .+++.+|.+-|+.|.|+| ..|.+|+|+|.|++++||...++.++++ +.||.+.|.+
T Consensus 370 kVWDLR~r~~------ly~ipAH~nlVS~Vk~~p--~~g~fL~TasyD~t~kiWs~~~~~~~ks------LaGHe~kV~s 435 (459)
T KOG0272|consen 370 KVWDLRMRSE------LYTIPAHSNLVSQVKYSP--QEGYFLVTASYDNTVKIWSTRTWSPLKS------LAGHEGKVIS 435 (459)
T ss_pred EEeeeccccc------ceecccccchhhheEecc--cCCeEEEEcccCcceeeecCCCcccchh------hcCCccceEE
Confidence 9999998775 445799999999999999 5899999999999999999999998877 8999999999
Q ss_pred CCCCCCCcee-eeeecce--eee
Q 000722 320 HPRAPNLDIL-TCVKDSH--IWA 339 (1331)
Q Consensus 320 vafspdg~lL-a~s~Dg~--IWd 339 (1331)
+.++++++.+ +++.|.+ +|.
T Consensus 436 ~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 436 LDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred EEeccCCceEEEeccCceeeecc
Confidence 9999999965 7788885 674
No 10
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=2.9e-29 Score=295.42 Aligned_cols=433 Identities=17% Similarity=0.233 Sum_probs=300.3
Q ss_pred cccccccCCCcEEEEEeecCCceeEeecCCCceeeeccccceEEeeec-cCCcccchhhh--hhhhhhcccccccCCCCc
Q 000722 3 RLKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELK-AGGVDQRRLVG--AKLEKLAEGELEHKGKPT 79 (1331)
Q Consensus 3 ~l~~L~gHs~~V~~lafSPdg~~LaSgs~DGtV~VWD~~tg~~i~s~~-~~~~~~i~~vs--pdg~~Lasgs~d~~g~~l 79 (1331)
+-+++.||.+.|+++.|+.|.++|++|+.|-+++||+++..+-..... .+|.+.+...- .+...+.+.+
T Consensus 137 l~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvs-------- 208 (893)
T KOG0291|consen 137 LHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTVS-------- 208 (893)
T ss_pred EeeeecCCccceeEEEeccCCceEEeccccceEEEEEeccccccceEeccCCCcceEEEEeccCcceEEEEe--------
Confidence 357889999999999999999999999999999999988655533222 13333322111 1111111111
Q ss_pred ccccCCceeEEeeecchhhHHHHhhh------------------------ccccc-cC----CcccccccccccCCCCCC
Q 000722 80 EAMRGGSVKQVNFYDDDVRFWQLWRN------------------------RAAAA-EA----PTAVSNVTSGFASPPPST 130 (1331)
Q Consensus 80 ~~l~gg~V~sVaf~DgtIrvWdl~tg------------------------~~l~~-~~----~~~~~~~~~~V~svafsp 130 (1331)
.||.+.+|..... +.... .+ ..........|++.+||+
T Consensus 209 -------------kdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~ 275 (893)
T KOG0291|consen 209 -------------KDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHK 275 (893)
T ss_pred -------------cCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccC
Confidence 4666666655410 00000 00 111111126788999999
Q ss_pred CCceEEEEEeeccee-EeeeecccCCCCCccccccccceeeehhhcccCCCcceEeecCCC-ceeeeeehhhheeehhhc
Q 000722 131 KGRHFLVICCVNKAI-FLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSD-GVIRVLSMISWKLVRRYT 208 (1331)
Q Consensus 131 dg~~lLasgs~d~iI-vwDl~t~~~~~i~~~~~h~~~V~~Vaf~P~s~Spdg~~LasGs~D-GtIrlWDl~t~~~v~~~~ 208 (1331)
.-. +|++|-.++.. ++.+... ..+..+......|..+.| +..|.+|+.||.. |.+-||+|++...+....
T Consensus 276 ~t~-~lvvgFssG~f~LyelP~f--~lih~LSis~~~I~t~~~-----N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQ 347 (893)
T KOG0291|consen 276 GTN-LLVVGFSSGEFGLYELPDF--NLIHSLSISDQKILTVSF-----NSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQ 347 (893)
T ss_pred Cce-EEEEEecCCeeEEEecCCc--eEEEEeecccceeeEEEe-----cccCCEEEEcCCccceEEEEEeeccceeeecc
Confidence 765 99999999988 5565542 234444555678999999 6679999999865 899999999988887776
Q ss_pred CCCccchhhhhHhhhccccEEEeecCCCceEEEEeccCCCccccccccceeeeccCcEEEEEechhccCCCcEEEeecCc
Q 000722 209 GGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADK 288 (1331)
Q Consensus 209 ~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg 288 (1331)
+|...++|++ ++|||.++++|+.||.|+|||..++-|..+ +..|+..|+.+.|+. .++.+++.|-||
T Consensus 348 -gH~~~i~~l~---YSpDgq~iaTG~eDgKVKvWn~~SgfC~vT------FteHts~Vt~v~f~~---~g~~llssSLDG 414 (893)
T KOG0291|consen 348 -GHSDRITSLA---YSPDGQLIATGAEDGKVKVWNTQSGFCFVT------FTEHTSGVTAVQFTA---RGNVLLSSSLDG 414 (893)
T ss_pred -ccccceeeEE---ECCCCcEEEeccCCCcEEEEeccCceEEEE------eccCCCceEEEEEEe---cCCEEEEeecCC
Confidence 9999999998 899999999999999999999999877654 789999999999998 899999999999
Q ss_pred eeEeeeccchhhhcccCCCCcccccccccccCCCCCCCcee-eeeecc---eeeeeecCccccccccccccccCCCcccc
Q 000722 289 TLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDIL-TCVKDS---HIWAIEHPTYSALTRPLCELSSLVPPQVL 364 (1331)
Q Consensus 289 ~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg~lL-a~s~Dg---~IWdl~~~~~~~l~~~~~~~~~~~~~~~l 364 (1331)
+||.||+...++.+++..... ....|++..|.|.++ +|+.|. .||++.++. .+-.+
T Consensus 415 tVRAwDlkRYrNfRTft~P~p-----~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGq---------------llDiL 474 (893)
T KOG0291|consen 415 TVRAWDLKRYRNFRTFTSPEP-----IQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQ---------------LLDIL 474 (893)
T ss_pred eEEeeeecccceeeeecCCCc-----eeeeEEEEcCCCCEEEeeccceEEEEEEEeecCe---------------eeehh
Confidence 999999999988888644322 234588889999988 455565 389999873 35578
Q ss_pred ccccceEEEEEEeccCCccEeeecceeEEEEeecCCCCC-CCCCCCCCC--------CCCCCcceEEEeeeeeeeeeeec
Q 000722 365 AHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPRSL-PAVAPLPTP--------SGSRDHSAVYIVERELKLVNFQL 435 (1331)
Q Consensus 365 ~~h~~~~I~~la~sp~~~~lLAtGs~DG~Il~VWDlr~~-p~i~~~~t~--------s~~~~~s~~~~~~~~l~l~~fq~ 435 (1331)
.+|.. +|.++.|+| .+.+|++|+.|.+| |+||+-.. ....++... ....+.-++-+.++.+.+++.+.
T Consensus 475 sGHEg-PVs~l~f~~-~~~~LaS~SWDkTV-RiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~ 551 (893)
T KOG0291|consen 475 SGHEG-PVSGLSFSP-DGSLLASGSWDKTV-RIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKE 551 (893)
T ss_pred cCCCC-cceeeEEcc-ccCeEEeccccceE-EEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEEEecceEEEEEhhh
Confidence 89999 999999999 57789999999998 99998543 222222111 11123334555666665554432
Q ss_pred ccCCCCCCCCCCCccccCCCCCCCCchhhHhhhccccccccCCCceeEEEEeeCCcEEEEEcCCCceeeEEeecceeE
Q 000722 436 SSAANPSLGNNGSLSETGRLKGDLPDALQIKQIKKHISTPVPHDSYSILSVSSSGKYLAVVWPDIPYFSVYKVSDWSI 513 (1331)
Q Consensus 436 ~~~~~~~lg~~~~ls~~G~~~~~~~e~l~v~~~~r~i~t~~~~e~~s~ls~SpdGrylaVv~~~~g~y~Iy~i~~~~~ 513 (1331)
.. ...+.+|+.+...++..+- .....+......++.+++|+||++| +....+..+.||++.+.-+
T Consensus 552 ~~---------q~~~IdgrkD~~~gR~~~D---~~ta~~sa~~K~Ftti~ySaDG~~I-lAgG~sn~iCiY~v~~~vl 616 (893)
T KOG0291|consen 552 AV---------QVGSIDGRKDLSGGRKETD---RITAENSAKGKTFTTICYSADGKCI-LAGGESNSICIYDVPEGVL 616 (893)
T ss_pred ce---------eeccccchhhccccccccc---eeehhhcccCCceEEEEEcCCCCEE-EecCCcccEEEEECchhhe
Confidence 11 1112345544333333211 0101111122345789999999999 5666788899999876443
No 11
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=5.6e-30 Score=301.93 Aligned_cols=353 Identities=19% Similarity=0.285 Sum_probs=265.5
Q ss_pred cccccc-CCCcEEEEEeecCCceeEeecCCCceeeeccccceEEeeeccCCcccchhhh--h--hhhhhcccccccCCC-
Q 000722 4 LKAFRP-TNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVG--A--KLEKLAEGELEHKGK- 77 (1331)
Q Consensus 4 l~~L~g-Hs~~V~~lafSPdg~~LaSgs~DGtV~VWD~~tg~~i~s~~~~~~~~i~~vs--p--dg~~Lasgs~d~~g~- 77 (1331)
++.++. |+.+|.-++|+|.+..|++|+.||.|+|||+..+.+.+.|.+++ .-+..+. + ....|+++..|...+
T Consensus 97 irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~g-GvVssl~F~~~~~~~lL~sg~~D~~v~v 175 (775)
T KOG0319|consen 97 IRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHG-GVVSSLLFHPHWNRWLLASGATDGTVRV 175 (775)
T ss_pred hHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCC-ceEEEEEeCCccchhheeecCCCceEEE
Confidence 456677 99999999999999999999999999999999999999999543 3333332 2 334456666555311
Q ss_pred --------Ccccc--cCCceeEEee-------------------------------------------------------
Q 000722 78 --------PTEAM--RGGSVKQVNF------------------------------------------------------- 92 (1331)
Q Consensus 78 --------~l~~l--~gg~V~sVaf------------------------------------------------------- 92 (1331)
|+.++ +.+.|+++.|
T Consensus 176 wnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~T 255 (775)
T KOG0319|consen 176 WNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIIT 255 (775)
T ss_pred EEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEE
Confidence 22222 2244555544
Q ss_pred --ecchhhHHHHhhhcccccc-----------------------------------------------------------
Q 000722 93 --YDDDVRFWQLWRNRAAAAE----------------------------------------------------------- 111 (1331)
Q Consensus 93 --~DgtIrvWdl~tg~~l~~~----------------------------------------------------------- 111 (1331)
.+|.+++||..+++++...
T Consensus 256 aG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e 335 (775)
T KOG0319|consen 256 AGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPE 335 (775)
T ss_pred ecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCc
Confidence 3445555554444332100
Q ss_pred ----------------------CCcccccccccccCCCCCCCCceEEEEEeeccee-Eeeeecc--cCCCCCcccccccc
Q 000722 112 ----------------------APTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTM--RGRDIPKQELDNKS 166 (1331)
Q Consensus 112 ----------------------~~~~~~~~~~~V~svafspdg~~lLasgs~d~iI-vwDl~t~--~~~~i~~~~~h~~~ 166 (1331)
.....+| ...|.++....+|. +|++|+.|+.+ +|.++.. +..++....+|...
T Consensus 336 ~~~laVATNs~~lr~y~~~~~~c~ii~GH-~e~vlSL~~~~~g~-llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~s 413 (775)
T KOG0319|consen 336 ESHLAVATNSPELRLYTLPTSYCQIIPGH-TEAVLSLDVWSSGD-LLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNS 413 (775)
T ss_pred cceEEEEeCCCceEEEecCCCceEEEeCc-hhheeeeeecccCc-EEEEecCCceEEEEEecCCcchhhhhhhhcccccc
Confidence 0111122 44455555334454 89999999877 7866332 23356667899999
Q ss_pred ceeeehhhcccCCCcceEeecCCCceeeeeehhhhee-----e---hhhcCCCccchhhhhHhhhccccEEEeecCCCce
Q 000722 167 LVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKL-----V---RRYTGGHKGSISCLMTFMASSGEALLVSGGSDGL 238 (1331)
Q Consensus 167 V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~~~-----v---~~~~~gH~~~V~~vawf~~spdg~lLaSgs~Dgt 238 (1331)
|.+++++ .....+|+++|.|+++++|++...+. + +.....|...|+|++ .+|+..+|+|||.|++
T Consensus 414 vgava~~----~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Va---ia~ndkLiAT~SqDkt 486 (775)
T KOG0319|consen 414 VGAVAGS----KLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVA---IAPNDKLIATGSQDKT 486 (775)
T ss_pred cceeeec----ccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceE---ecCCCceEEecccccc
Confidence 9999993 23346899999999999999975211 1 112237999999998 8999999999999999
Q ss_pred EEEEeccCCCccccccccceeeeccCcEEEEEechhccCCCcEEEeecCceeEeeeccchhhhcccCCCCcccccccccc
Q 000722 239 LILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASW 318 (1331)
Q Consensus 239 IrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~ 318 (1331)
.++|++...... .++.||..+|++|.|+| ..+.++|+|.|++|+||.+.++.|+++ +.||+..|.
T Consensus 487 aKiW~le~~~l~------~vLsGH~RGvw~V~Fs~---~dq~laT~SgD~TvKIW~is~fSClkT------~eGH~~aVl 551 (775)
T KOG0319|consen 487 AKIWDLEQLRLL------GVLSGHTRGVWCVSFSK---NDQLLATCSGDKTVKIWSISTFSCLKT------FEGHTSAVL 551 (775)
T ss_pred eeeecccCceEE------EEeeCCccceEEEEecc---ccceeEeccCCceEEEEEeccceeeee------ecCccceeE
Confidence 999999966543 45899999999999999 678999999999999999999999988 799999999
Q ss_pred cCCCCCCCc-eeeeeecc--eeeeeecCccccccccccccccCCCccccccccceEEEEEEeccCCccEeeecceeEEEE
Q 000722 319 CHPRAPNLD-ILTCVKDS--HIWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVII 395 (1331)
Q Consensus 319 svafspdg~-lLa~s~Dg--~IWdl~~~~~~~l~~~~~~~~~~~~~~~l~~h~~~~I~~la~sp~~~~lLAtGs~DG~Il 395 (1331)
.+.|-.+++ +++++.|| +||++.+. .|..++..|++ +||++..++. ...++||+.||.|
T Consensus 552 ra~F~~~~~qliS~~adGliKlWnikt~---------------eC~~tlD~H~D-rvWaL~~~~~-~~~~~tgg~Dg~i- 613 (775)
T KOG0319|consen 552 RASFIRNGKQLISAGADGLIKLWNIKTN---------------ECEMTLDAHND-RVWALSVSPL-LDMFVTGGGDGRI- 613 (775)
T ss_pred eeeeeeCCcEEEeccCCCcEEEEeccch---------------hhhhhhhhccc-eeEEEeecCc-cceeEecCCCeEE-
Confidence 999998877 66899999 48999975 56889999999 9999999995 6689999999998
Q ss_pred eecC
Q 000722 396 SEFD 399 (1331)
Q Consensus 396 ~VWD 399 (1331)
.+|.
T Consensus 614 ~~wk 617 (775)
T KOG0319|consen 614 IFWK 617 (775)
T ss_pred EEee
Confidence 4775
No 12
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.97 E-value=9.3e-29 Score=282.03 Aligned_cols=295 Identities=15% Similarity=0.184 Sum_probs=223.2
Q ss_pred ccccccCCCcEEEEEeecCCceeEeecCCCceeeeccccceEE--eeeccCCcccchhhh--hhhhhhcccccccCCCCc
Q 000722 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVI--YELKAGGVDQRRLVG--AKLEKLAEGELEHKGKPT 79 (1331)
Q Consensus 4 l~~L~gHs~~V~~lafSPdg~~LaSgs~DGtV~VWD~~tg~~i--~s~~~~~~~~i~~vs--pdg~~Lasgs~d~~g~~l 79 (1331)
...+.+|...++-..|||.|-|+|+|+..|+|||||....+.+ .+|+.- ...+.-++ .++++++..++
T Consensus 52 ~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~-aG~I~Di~Wd~ds~RI~avGE------- 123 (603)
T KOG0318|consen 52 VDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVL-AGPIKDISWDFDSKRIAAVGE------- 123 (603)
T ss_pred eeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeec-ccccccceeCCCCcEEEEEec-------
Confidence 3467899999999999999999999999999999998653332 233210 01111111 23333332211
Q ss_pred ccccCCceeEEeeecchhhHHHHhhhccccccCCcccccccccccCCCCCCCCceEEEEEeeccee-EeeeecccCCCCC
Q 000722 80 EAMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIP 158 (1331)
Q Consensus 80 ~~l~gg~V~sVaf~DgtIrvWdl~tg~~l~~~~~~~~~~~~~~V~svafspdg~~lLasgs~d~iI-vwDl~t~~~~~i~ 158 (1331)
|.= .-|.+-+||- +..+ ..+.+| ...|+++.|-|..+..+++|++|..+ ++.--..+ .-.
T Consensus 124 -----Gre-----rfg~~F~~DS--G~Sv----Gei~Gh-Sr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFK--Fk~ 184 (603)
T KOG0318|consen 124 -----GRE-----RFGHVFLWDS--GNSV----GEITGH-SRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFK--FKS 184 (603)
T ss_pred -----Ccc-----ceeEEEEecC--CCcc----ceeecc-ceeEeeeeccCCCceEEEeccCCCeEEEeeCCCee--eee
Confidence 110 1122334553 2221 344555 78899999999999999999999998 55443322 223
Q ss_pred ccccccccceeeehhhcccCCCcceEeecCCCceeeeeehhhheeehhhc--CCCccchhhhhHhhhccccEEEeecCCC
Q 000722 159 KQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYT--GGHKGSISCLMTFMASSGEALLVSGGSD 236 (1331)
Q Consensus 159 ~~~~h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~~~v~~~~--~gH~~~V~~vawf~~spdg~lLaSgs~D 236 (1331)
+...|...|+|+.| +|||.++++.+.||+|.+||-.+++.+..+. .+|.+.|.++.| +||+..|+|+|.|
T Consensus 185 s~r~HskFV~~VRy-----sPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsW---sPDs~~~~T~SaD 256 (603)
T KOG0318|consen 185 SFREHSKFVNCVRY-----SPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSW---SPDSTQFLTVSAD 256 (603)
T ss_pred cccccccceeeEEE-----CCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEE---CCCCceEEEecCC
Confidence 56788999999999 7899999999999999999999999888774 479999999995 8999999999999
Q ss_pred ceEEEEeccCCCccccc-------------------------------------cccceeeeccCcEEEEEechhccCCC
Q 000722 237 GLLILWSADHGQDSREL-------------------------------------VPKLSLKAHDGGVVAVELSRVMGGSP 279 (1331)
Q Consensus 237 gtIrVWDl~tg~~~~~~-------------------------------------~~~~~l~gH~~~V~svafsp~~~dg~ 279 (1331)
.+++|||+.+.++++++ .+..++.||...|+++..+| ++.
T Consensus 257 kt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~---d~~ 333 (603)
T KOG0318|consen 257 KTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSP---DGK 333 (603)
T ss_pred ceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcC---CCC
Confidence 99999999875443211 23445789999999999999 889
Q ss_pred cEEEeecCceeEeeeccchhhhcccCCCCcccccccccccCCCCCCCceeeeeecceeeeee
Q 000722 280 QLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDILTCVKDSHIWAIE 341 (1331)
Q Consensus 280 ~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg~lLa~s~Dg~IWdl~ 341 (1331)
+|++|+.||.|.-||..++..-+.. -.+|+..|.+++.+..+.++++|.|.+||.+.
T Consensus 334 ~i~SgsyDG~I~~W~~~~g~~~~~~-----g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~ 390 (603)
T KOG0318|consen 334 TIYSGSYDGHINSWDSGSGTSDRLA-----GKGHTNQIKGMAASESGELFTIGWDDTLRVIS 390 (603)
T ss_pred EEEeeccCceEEEEecCCccccccc-----cccccceEEEEeecCCCcEEEEecCCeEEEEe
Confidence 9999999999999999988753321 26899999999999989999999999887664
No 13
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=5.5e-30 Score=281.76 Aligned_cols=290 Identities=19% Similarity=0.282 Sum_probs=250.2
Q ss_pred ccccccCCCcEEEEEeecCCceeEeecCCCceeeeccccceEEeeeccCCcccchhhhhhhhhhcccccccCCCCccccc
Q 000722 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMR 83 (1331)
Q Consensus 4 l~~L~gHs~~V~~lafSPdg~~LaSgs~DGtV~VWD~~tg~~i~s~~~~~~~~i~~vspdg~~Lasgs~d~~g~~l~~l~ 83 (1331)
.+.+.||...|+.+-|||+-..+++++.|++|++||+.+|++...+++|
T Consensus 101 ~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGH------------------------------- 149 (406)
T KOG0295|consen 101 VQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGH------------------------------- 149 (406)
T ss_pred hhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhcc-------------------------------
Confidence 3567899999999999999999999999999999999999887766633
Q ss_pred CCceeEEeeecchhhHHHHhhhccccccCCcccccccccccCCCCCCCCceEEEEEeeccee-EeeeecccCCCCCcccc
Q 000722 84 GGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQEL 162 (1331)
Q Consensus 84 gg~V~sVaf~DgtIrvWdl~tg~~l~~~~~~~~~~~~~~V~svafspdg~~lLasgs~d~iI-vwDl~t~~~~~i~~~~~ 162 (1331)
.+.+.++.|+..|+ ++++|+.|-.+ +||..+. .++++...+
T Consensus 150 ------------------------------------t~sv~di~~~a~Gk-~l~tcSsDl~~~LWd~~~~-~~c~ks~~g 191 (406)
T KOG0295|consen 150 ------------------------------------TDSVFDISFDASGK-YLATCSSDLSAKLWDFDTF-FRCIKSLIG 191 (406)
T ss_pred ------------------------------------ccceeEEEEecCcc-EEEecCCccchhheeHHHH-HHHHHHhcC
Confidence 22244566777887 99999999855 8998874 457778899
Q ss_pred ccccceeeehhhcccCCCcceEeecCCCceeeeeehhhheeehhhcCCCccchhhhhHhhhccccEEEeecCCCceEEEE
Q 000722 163 DNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILW 242 (1331)
Q Consensus 163 h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrVW 242 (1331)
|...|.++.|.| .|.+|++++.|.+|+.|++.++-+++++. +|...|..++ .+.||.++++|+.|.+|++|
T Consensus 192 h~h~vS~V~f~P-----~gd~ilS~srD~tik~We~~tg~cv~t~~-~h~ewvr~v~---v~~DGti~As~s~dqtl~vW 262 (406)
T KOG0295|consen 192 HEHGVSSVFFLP-----LGDHILSCSRDNTIKAWECDTGYCVKTFP-GHSEWVRMVR---VNQDGTIIASCSNDQTLRVW 262 (406)
T ss_pred cccceeeEEEEe-----cCCeeeecccccceeEEecccceeEEecc-CchHhEEEEE---ecCCeeEEEecCCCceEEEE
Confidence 999999999964 68999999999999999999999999998 9999999887 89999999999999999999
Q ss_pred eccCCCccccccccceeeeccCcEEEEEechhc------------cCCCcEEEeecCceeEeeeccchhhhcccCCCCcc
Q 000722 243 SADHGQDSRELVPKLSLKAHDGGVVAVELSRVM------------GGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKL 310 (1331)
Q Consensus 243 Dl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~------------~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l 310 (1331)
-+.++++... +.+|+.+|-+++|-|.. +.++++.+++.|++|++||+.++.|+.+ +
T Consensus 263 ~~~t~~~k~~------lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~t------L 330 (406)
T KOG0295|consen 263 VVATKQCKAE------LREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFT------L 330 (406)
T ss_pred Eeccchhhhh------hhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEE------E
Confidence 9999876544 68999999999998731 2346999999999999999999999887 7
Q ss_pred cccccccccCCCCCCCcee-eeeecce--eeeeecCccccccccccccccCCCccccccccceEEEEEEeccCCccEeee
Q 000722 311 ACHSVASWCHPRAPNLDIL-TCVKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVAT 387 (1331)
Q Consensus 311 ~~H~~~V~svafspdg~lL-a~s~Dg~--IWdl~~~~~~~l~~~~~~~~~~~~~~~l~~h~~~~I~~la~sp~~~~lLAt 387 (1331)
.+|.+.|..++|+|.|++| ++.+|++ +||+++. .++.++..|.. -+++++|+.+.+ ++++
T Consensus 331 ~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~---------------~cmk~~~ah~h-fvt~lDfh~~~p-~VvT 393 (406)
T KOG0295|consen 331 VGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNL---------------QCMKTLEAHEH-FVTSLDFHKTAP-YVVT 393 (406)
T ss_pred ecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccc---------------eeeeccCCCcc-eeEEEecCCCCc-eEEe
Confidence 9999999999999999977 6778875 8999875 45667777777 899999999655 6999
Q ss_pred cceeEEEEeecCCC
Q 000722 388 GTNVGVIISEFDPR 401 (1331)
Q Consensus 388 Gs~DG~Il~VWDlr 401 (1331)
|+-|..+ ++|..|
T Consensus 394 GsVdqt~-KvwEcr 406 (406)
T KOG0295|consen 394 GSVDQTV-KVWECR 406 (406)
T ss_pred cccccee-eeeecC
Confidence 9999998 899753
No 14
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=6.8e-28 Score=278.63 Aligned_cols=241 Identities=15% Similarity=0.251 Sum_probs=208.6
Q ss_pred cccccCCCCCCCCceEEEEEeeccee-EeeeecccCCCCCccccccccceeeehhhcccCCCcceEeecCCCceeeeeeh
Q 000722 120 TSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSM 198 (1331)
Q Consensus 120 ~~~V~svafspdg~~lLasgs~d~iI-vwDl~t~~~~~i~~~~~h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl 198 (1331)
...|.++.|||..+ +++++-.++.+ +||+++.. .+..+....-+|++..|. +..+++++|++|+.||||+.
T Consensus 13 SdRVKsVd~HPteP-w~la~LynG~V~IWnyetqt--mVksfeV~~~PvRa~kfi-----aRknWiv~GsDD~~IrVfny 84 (794)
T KOG0276|consen 13 SDRVKSVDFHPTEP-WILAALYNGDVQIWNYETQT--MVKSFEVSEVPVRAAKFI-----ARKNWIVTGSDDMQIRVFNY 84 (794)
T ss_pred CCceeeeecCCCCc-eEEEeeecCeeEEEecccce--eeeeeeecccchhhheee-----eccceEEEecCCceEEEEec
Confidence 67899999999998 66666555555 99999843 456677778899999995 46889999999999999999
Q ss_pred hhheeehhhcCCCccchhhhhHhhhccccEEEeecCCCceEEEEeccCCCccccccccceeeeccCcEEEEEechhccCC
Q 000722 199 ISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGS 278 (1331)
Q Consensus 199 ~t~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg 278 (1331)
.+++.++.|. +|..+|.|++ .+|...+++|+|.|-+|++||.... |....++.||+.-|.+++|+| .|.
T Consensus 85 nt~ekV~~Fe-AH~DyIR~ia---vHPt~P~vLtsSDDm~iKlW~we~~-----wa~~qtfeGH~HyVMqv~fnP--kD~ 153 (794)
T KOG0276|consen 85 NTGEKVKTFE-AHSDYIRSIA---VHPTLPYVLTSSDDMTIKLWDWENE-----WACEQTFEGHEHYVMQVAFNP--KDP 153 (794)
T ss_pred ccceeeEEee-ccccceeeee---ecCCCCeEEecCCccEEEEeeccCc-----eeeeeEEcCcceEEEEEEecC--CCc
Confidence 9999999998 9999999998 8999999999999999999998764 344556899999999999999 588
Q ss_pred CcEEEeecCceeEeeeccchhhhcccCCCCcccccccccccCCCCCCCc---eeeeeecce--eeeeecCcccccccccc
Q 000722 279 PQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLD---ILTCVKDSH--IWAIEHPTYSALTRPLC 353 (1331)
Q Consensus 279 ~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg~---lLa~s~Dg~--IWdl~~~~~~~l~~~~~ 353 (1331)
+.++|+|-|++|+||.+.+..+..+ +.+|...|.|+.+-+.|. +++++.|.+ |||.++.
T Consensus 154 ntFaS~sLDrTVKVWslgs~~~nfT------l~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk---------- 217 (794)
T KOG0276|consen 154 NTFASASLDRTVKVWSLGSPHPNFT------LEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTK---------- 217 (794)
T ss_pred cceeeeeccccEEEEEcCCCCCcee------eeccccCcceEEeccCCCcceEEecCCCceEEEeecchH----------
Confidence 9999999999999999987776655 789999999999998873 667888875 8999874
Q ss_pred ccccCCCccccccccceEEEEEEeccCCccEeeecceeEEEEeecCCCCC
Q 000722 354 ELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPRSL 403 (1331)
Q Consensus 354 ~~~~~~~~~~l~~h~~~~I~~la~sp~~~~lLAtGs~DG~Il~VWDlr~~ 403 (1331)
.|++++.+|.. .|.++.|||. --++++|+.||++ |+|+-.+.
T Consensus 218 -----~CV~TLeGHt~-Nvs~v~fhp~-lpiiisgsEDGTv-riWhs~Ty 259 (794)
T KOG0276|consen 218 -----SCVQTLEGHTN-NVSFVFFHPE-LPIIISGSEDGTV-RIWNSKTY 259 (794)
T ss_pred -----HHHHHhhcccc-cceEEEecCC-CcEEEEecCCccE-EEecCcce
Confidence 56889999999 8999999994 6679999999998 99986643
No 15
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.96 E-value=2.8e-29 Score=264.02 Aligned_cols=279 Identities=17% Similarity=0.271 Sum_probs=239.9
Q ss_pred ceeEeecCCCceeeeccccceEEeeeccCCcccchhhhhhhhhhcccccccCCCCcccccCCceeEEeeecchhhHHHHh
Q 000722 24 PWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRGGSVKQVNFYDDDVRFWQLW 103 (1331)
Q Consensus 24 ~~LaSgs~DGtV~VWD~~tg~~i~s~~~~~~~~i~~vspdg~~Lasgs~d~~g~~l~~l~gg~V~sVaf~DgtIrvWdl~ 103 (1331)
-+|+|+++|.+||+|...+|.|.++++ +.
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiq-h~-------------------------------------------------- 39 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQ-HP-------------------------------------------------- 39 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEe-cC--------------------------------------------------
Confidence 389999999999999999999999998 21
Q ss_pred hhccccccCCcccccccccccCCCCCCCCceEEEEEeecceeEeeeecccCCCCCccccccccceeeehhhcccCCCcce
Q 000722 104 RNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPL 183 (1331)
Q Consensus 104 tg~~l~~~~~~~~~~~~~~V~svafspdg~~lLasgs~d~iIvwDl~t~~~~~i~~~~~h~~~V~~Vaf~P~s~Spdg~~ 183 (1331)
++.|+.+...|+++ .|++++...+.++|+++.+...+.++.+|.+.|+.|.| ..+|++
T Consensus 40 ----------------dsqVNrLeiTpdk~-~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF-----~~dgrW 97 (311)
T KOG0315|consen 40 ----------------DSQVNRLEITPDKK-DLAAAGNQHVRLYDLNSNNPNPVATFEGHTKNVTAVGF-----QCDGRW 97 (311)
T ss_pred ----------------ccceeeEEEcCCcc-hhhhccCCeeEEEEccCCCCCceeEEeccCCceEEEEE-----eecCeE
Confidence 22355667789987 89999998888999999887788889999999999999 679999
Q ss_pred EeecCCCceeeeeehhhheeehhhcCCCccchhhhhHhhhccccEEEeecCCCceEEEEeccCCCccccccccceeeecc
Q 000722 184 VAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHD 263 (1331)
Q Consensus 184 LasGs~DGtIrlWDl~t~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrVWDl~tg~~~~~~~~~~~l~gH~ 263 (1331)
+++|++||++||||++...+.+.+ .|..+|+++. .+|+...|++|..+|.|++||+....+.+++. ..-.
T Consensus 98 MyTgseDgt~kIWdlR~~~~qR~~--~~~spVn~vv---lhpnQteLis~dqsg~irvWDl~~~~c~~~li-----Pe~~ 167 (311)
T KOG0315|consen 98 MYTGSEDGTVKIWDLRSLSCQRNY--QHNSPVNTVV---LHPNQTELISGDQSGNIRVWDLGENSCTHELI-----PEDD 167 (311)
T ss_pred EEecCCCceEEEEeccCcccchhc--cCCCCcceEE---ecCCcceEEeecCCCcEEEEEccCCccccccC-----CCCC
Confidence 999999999999999998777777 4889999997 89999999999999999999999887766543 3344
Q ss_pred CcEEEEEechhccCCCcEEEeecCceeEeeeccchhhhcccCCCCcccccccccccCCCCCCCcee-eeeecce--eeee
Q 000722 264 GGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDIL-TCVKDSH--IWAI 340 (1331)
Q Consensus 264 ~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg~lL-a~s~Dg~--IWdl 340 (1331)
..|.++...| +|.+++.+...|++.+|++-+......+.|+.++..|...+..+.+||++++| +||.|.+ ||+.
T Consensus 168 ~~i~sl~v~~---dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~ 244 (311)
T KOG0315|consen 168 TSIQSLTVMP---DGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNT 244 (311)
T ss_pred cceeeEEEcC---CCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEec
Confidence 6799999999 99999999999999999999888888888999999999999999999999987 6788886 8887
Q ss_pred ecCccccccccccccccCCCccccccccceEEEEEEeccCCccEeeecceeEEEEeecCCCCCCC
Q 000722 341 EHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPRSLPA 405 (1331)
Q Consensus 341 ~~~~~~~l~~~~~~~~~~~~~~~l~~h~~~~I~~la~sp~~~~lLAtGs~DG~Il~VWDlr~~p~ 405 (1331)
+.. . +....+.+|.. .+|..+||. ++.+|++|+.|+.+ ++|++.....
T Consensus 245 ~~~-~-------------kle~~l~gh~r-WvWdc~FS~-dg~YlvTassd~~~-rlW~~~~~k~ 292 (311)
T KOG0315|consen 245 DDF-F-------------KLELVLTGHQR-WVWDCAFSA-DGEYLVTASSDHTA-RLWDLSAGKE 292 (311)
T ss_pred CCc-e-------------eeEEEeecCCc-eEEeeeecc-CccEEEecCCCCce-eecccccCce
Confidence 752 1 12335667777 999999999 58889999999998 9999875443
No 16
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.96 E-value=1.4e-28 Score=269.11 Aligned_cols=294 Identities=15% Similarity=0.266 Sum_probs=242.5
Q ss_pred ccccccCCCcEEEEEeecCCceeEeecCCCceeeeccccceEEeeeccCCcccchhhhhhhhhhcccccccCCCCccccc
Q 000722 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMR 83 (1331)
Q Consensus 4 l~~L~gHs~~V~~lafSPdg~~LaSgs~DGtV~VWD~~tg~~i~s~~~~~~~~i~~vspdg~~Lasgs~d~~g~~l~~l~ 83 (1331)
.+.+.||.++|.|+++.|...|++||+.|++|+|||+.+|++..++.++
T Consensus 144 ~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGh------------------------------- 192 (460)
T KOG0285|consen 144 YRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGH------------------------------- 192 (460)
T ss_pred hhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecch-------------------------------
Confidence 4678999999999999999999999999999999999999999888733
Q ss_pred CCceeEEeeecchhhHHHHhhhccccccCCcccccccccccCCCCCCCCceEEEEEeeccee-EeeeecccCCCCCcccc
Q 000722 84 GGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQEL 162 (1331)
Q Consensus 84 gg~V~sVaf~DgtIrvWdl~tg~~l~~~~~~~~~~~~~~V~svafspdg~~lLasgs~d~iI-vwDl~t~~~~~i~~~~~ 162 (1331)
-..|+.+++++..+ ++.++++|+.+ +||+...+ .+....+
T Consensus 193 ------------------------------------i~~vr~vavS~rHp-YlFs~gedk~VKCwDLe~nk--vIR~YhG 233 (460)
T KOG0285|consen 193 ------------------------------------IETVRGVAVSKRHP-YLFSAGEDKQVKCWDLEYNK--VIRHYHG 233 (460)
T ss_pred ------------------------------------hheeeeeeecccCc-eEEEecCCCeeEEEechhhh--hHHHhcc
Confidence 11244566777777 88888888888 89999754 4667889
Q ss_pred ccccceeeehhhcccCCCcceEeecCCCceeeeeehhhheeehhhcCCCccchhhhhHhhhccccEEEeecCCCceEEEE
Q 000722 163 DNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILW 242 (1331)
Q Consensus 163 h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrVW 242 (1331)
|-..|.|++. +|.-+.|++|+.|.++||||+++...+..+. ||...|..+. +.+-...+++||.|++|++|
T Consensus 234 HlS~V~~L~l-----hPTldvl~t~grDst~RvWDiRtr~~V~~l~-GH~~~V~~V~---~~~~dpqvit~S~D~tvrlW 304 (460)
T KOG0285|consen 234 HLSGVYCLDL-----HPTLDVLVTGGRDSTIRVWDIRTRASVHVLS-GHTNPVASVM---CQPTDPQVITGSHDSTVRLW 304 (460)
T ss_pred ccceeEEEec-----cccceeEEecCCcceEEEeeecccceEEEec-CCCCcceeEE---eecCCCceEEecCCceEEEe
Confidence 9999999999 4578899999999999999999999999987 9999999997 67777789999999999999
Q ss_pred eccCCCccccccccceeeeccCcEEEEEechhccCCCcEEEeecCceeEeeeccchhhhcccCCCCcccccccccccCCC
Q 000722 243 SADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPR 322 (1331)
Q Consensus 243 Dl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svaf 322 (1331)
|+..|+... ++..|...|.+++.|| ....++++|.| .|+-|++-.|..++. +.+|...|.++..
T Consensus 305 Dl~agkt~~------tlt~hkksvral~lhP---~e~~fASas~d-nik~w~~p~g~f~~n------lsgh~~iintl~~ 368 (460)
T KOG0285|consen 305 DLRAGKTMI------TLTHHKKSVRALCLHP---KENLFASASPD-NIKQWKLPEGEFLQN------LSGHNAIINTLSV 368 (460)
T ss_pred eeccCceeE------eeecccceeeEEecCC---chhhhhccCCc-cceeccCCccchhhc------cccccceeeeeee
Confidence 999987543 4788999999999999 77888888877 579999999887766 7899999999999
Q ss_pred CCCCceeeeeecce--eeeeecCccccccccccccccCCCccccccccceEEEEEEeccCCccEeeecceeEEEEeecCC
Q 000722 323 APNLDILTCVKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDP 400 (1331)
Q Consensus 323 spdg~lLa~s~Dg~--IWdl~~~~~~~l~~~~~~~~~~~~~~~l~~h~~~~I~~la~sp~~~~lLAtGs~DG~Il~VWDl 400 (1331)
..|+.+++|++.|. +||.+++-. +...+.......+.... .|++.+|... +..|++|..|..| ++|.-
T Consensus 369 nsD~v~~~G~dng~~~fwdwksg~n------yQ~~~t~vqpGSl~sEa--gI~as~fDkt-g~rlit~eadKtI-k~~ke 438 (460)
T KOG0285|consen 369 NSDGVLVSGGDNGSIMFWDWKSGHN------YQRGQTIVQPGSLESEA--GIFASCFDKT-GSRLITGEADKTI-KMYKE 438 (460)
T ss_pred ccCceEEEcCCceEEEEEecCcCcc------cccccccccCCcccccc--ceeEEeeccc-CceEEeccCCcce-EEEec
Confidence 99999999999987 688876411 11111112223333332 5999999984 6669999999998 89975
Q ss_pred CC
Q 000722 401 RS 402 (1331)
Q Consensus 401 r~ 402 (1331)
.+
T Consensus 439 De 440 (460)
T KOG0285|consen 439 DE 440 (460)
T ss_pred cc
Confidence 43
No 17
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=3.7e-28 Score=258.80 Aligned_cols=296 Identities=15% Similarity=0.197 Sum_probs=232.5
Q ss_pred cccccccCCCcEEEEEeecC-CceeEeecCCCceeeeccccc---eEEeeeccCCcccchhhhhhhhhhcccccccCCCC
Q 000722 3 RLKAFRPTNDKIVKIQLHPT-HPWLVTADASDHVSVWNWEHR---QVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKP 78 (1331)
Q Consensus 3 ~l~~L~gHs~~V~~lafSPd-g~~LaSgs~DGtV~VWD~~tg---~~i~s~~~~~~~~i~~vspdg~~Lasgs~d~~g~~ 78 (1331)
.++.++||+++|..++|||- |..|+||+.|+.||||+...+ .|...+.
T Consensus 6 ~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld---------------------------- 57 (312)
T KOG0645|consen 6 LEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLD---------------------------- 57 (312)
T ss_pred eEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEecc----------------------------
Confidence 36889999999999999998 889999999999999997631 2222222
Q ss_pred cccccCCceeEEeeecchhhHHHHhhhccccccCCcccccccccccCCCCCCCCceEEEEEeeccee-EeeeecccCCCC
Q 000722 79 TEAMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDI 157 (1331)
Q Consensus 79 l~~l~gg~V~sVaf~DgtIrvWdl~tg~~l~~~~~~~~~~~~~~V~svafspdg~~lLasgs~d~iI-vwDl~t~~~~~i 157 (1331)
+.|...|++++|+|.|+ +|++++.|..+ +|.-..++..++
T Consensus 58 --------------------------------------~~hkrsVRsvAwsp~g~-~La~aSFD~t~~Iw~k~~~efecv 98 (312)
T KOG0645|consen 58 --------------------------------------DGHKRSVRSVAWSPHGR-YLASASFDATVVIWKKEDGEFECV 98 (312)
T ss_pred --------------------------------------ccchheeeeeeecCCCc-EEEEeeccceEEEeecCCCceeEE
Confidence 11255688899999998 99999999887 775555667788
Q ss_pred CccccccccceeeehhhcccCCCcceEeecCCCceeeeeehhhh---eeehhhcCCCccchhhhhHhhhccccEEEeecC
Q 000722 158 PKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISW---KLVRRYTGGHKGSISCLMTFMASSGEALLVSGG 234 (1331)
Q Consensus 158 ~~~~~h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~---~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs 234 (1331)
..+.+|...|.|++| +++|.+|++++.|.+|-||....+ +++..+. +|...|..+. ++|...+|+|+|
T Consensus 99 ~~lEGHEnEVK~Vaw-----s~sG~~LATCSRDKSVWiWe~deddEfec~aVL~-~HtqDVK~V~---WHPt~dlL~S~S 169 (312)
T KOG0645|consen 99 ATLEGHENEVKCVAW-----SASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQ-EHTQDVKHVI---WHPTEDLLFSCS 169 (312)
T ss_pred eeeeccccceeEEEE-----cCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeec-cccccccEEE---EcCCcceeEEec
Confidence 899999999999999 789999999999999999998743 5666666 9999999998 588889999999
Q ss_pred CCceEEEEeccCCCccccccccceeeeccCcEEEEEechhccCCCcEEEeecCceeEeeeccchhhhcccCCCCcccccc
Q 000722 235 SDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHS 314 (1331)
Q Consensus 235 ~DgtIrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~ 314 (1331)
.|.+|++|+-..+. .+....++.+|...|.+++|++ .|..|+++++|++|+||...+.- -..|+
T Consensus 170 YDnTIk~~~~~~dd---dW~c~~tl~g~~~TVW~~~F~~---~G~rl~s~sdD~tv~Iw~~~~~~----------~~~~s 233 (312)
T KOG0645|consen 170 YDNTIKVYRDEDDD---DWECVQTLDGHENTVWSLAFDN---IGSRLVSCSDDGTVSIWRLYTDL----------SGMHS 233 (312)
T ss_pred cCCeEEEEeecCCC---CeeEEEEecCccceEEEEEecC---CCceEEEecCCcceEeeeeccCc----------chhcc
Confidence 99999999877322 1344567899999999999999 89999999999999999966221 24567
Q ss_pred cccccCCCCCCCceeeeeecce--eeeeecCccccccccccccccCCCccccccccceEEEEEEeccCCccEeeecceeE
Q 000722 315 VASWCHPRAPNLDILTCVKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVG 392 (1331)
Q Consensus 315 ~~V~svafspdg~lLa~s~Dg~--IWdl~~~~~~~l~~~~~~~~~~~~~~~l~~h~~~~I~~la~sp~~~~lLAtGs~DG 392 (1331)
..++.++|. ++.+.+++.|+. |+.-... ...+.+.+ ....-..|.. .|+++.|.|...++|++|++||
T Consensus 234 r~~Y~v~W~-~~~IaS~ggD~~i~lf~~s~~----~d~p~~~l----~~~~~~aHe~-dVNsV~w~p~~~~~L~s~~DDG 303 (312)
T KOG0645|consen 234 RALYDVPWD-NGVIASGGGDDAIRLFKESDS----PDEPSWNL----LAKKEGAHEV-DVNSVQWNPKVSNRLASGGDDG 303 (312)
T ss_pred cceEeeeec-ccceEeccCCCEEEEEEecCC----CCCchHHH----HHhhhccccc-ccceEEEcCCCCCceeecCCCc
Confidence 788889998 776778888886 4433321 01111111 0112234666 8999999996578899999999
Q ss_pred EEEeecCCC
Q 000722 393 VIISEFDPR 401 (1331)
Q Consensus 393 ~Il~VWDlr 401 (1331)
.| ++|.+.
T Consensus 304 ~v-~~W~l~ 311 (312)
T KOG0645|consen 304 IV-NFWELE 311 (312)
T ss_pred eE-EEEEec
Confidence 98 899753
No 18
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.96 E-value=2.5e-28 Score=261.14 Aligned_cols=297 Identities=16% Similarity=0.181 Sum_probs=232.2
Q ss_pred ccccccccCCCcEEEEEeecCCc-eeEeecCCCceeeeccccc-----eEEeeeccCCcccchhhhhhhhhhcccccccC
Q 000722 2 LRLKAFRPTNDKIVKIQLHPTHP-WLVTADASDHVSVWNWEHR-----QVIYELKAGGVDQRRLVGAKLEKLAEGELEHK 75 (1331)
Q Consensus 2 L~l~~L~gHs~~V~~lafSPdg~-~LaSgs~DGtV~VWD~~tg-----~~i~s~~~~~~~~i~~vspdg~~Lasgs~d~~ 75 (1331)
+...+|+||++.|+.++..+.++ .|++++.|.++.+|++... ..++
T Consensus 6 ~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r---------------------------- 57 (315)
T KOG0279|consen 6 VLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVR---------------------------- 57 (315)
T ss_pred eeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceee----------------------------
Confidence 34668999999999999999855 8899999999999997532 1122
Q ss_pred CCCcccccCCceeEEeeecchhhHHHHhhhccccccCCcccccccccccCCCCCCCCceEEEEEeeccee-EeeeecccC
Q 000722 76 GKPTEAMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRG 154 (1331)
Q Consensus 76 g~~l~~l~gg~V~sVaf~DgtIrvWdl~tg~~l~~~~~~~~~~~~~~V~svafspdg~~lLasgs~d~iI-vwDl~t~~~ 154 (1331)
.+.+| ...|..+..++||+ ++++++.|+.+ +||+.+++
T Consensus 58 --------------------------------------~~~GH-sH~v~dv~~s~dg~-~alS~swD~~lrlWDl~~g~- 96 (315)
T KOG0279|consen 58 --------------------------------------RLTGH-SHFVSDVVLSSDGN-FALSASWDGTLRLWDLATGE- 96 (315)
T ss_pred --------------------------------------eeecc-ceEecceEEccCCc-eEEeccccceEEEEEecCCc-
Confidence 22332 55677788899998 88888888888 78999874
Q ss_pred CCCCccccccccceeeehhhcccCCCcceEeecCCCceeeeeehhhheeehhhcCCCccchhhhhHhhhccc--cEEEee
Q 000722 155 RDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSG--EALLVS 232 (1331)
Q Consensus 155 ~~i~~~~~h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~~~v~~~~~gH~~~V~~vawf~~spd--g~lLaS 232 (1331)
....+.+|...|.+++| ++|.+.|++|+.|.+|++||............+|...|+|+. |+|+ ..+|++
T Consensus 97 -~t~~f~GH~~dVlsva~-----s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvr---fsP~~~~p~Ivs 167 (315)
T KOG0279|consen 97 -STRRFVGHTKDVLSVAF-----STDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVR---FSPNESNPIIVS 167 (315)
T ss_pred -EEEEEEecCCceEEEEe-----cCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEE---EcCCCCCcEEEE
Confidence 45578999999999999 789999999999999999998854444433434589999998 6776 789999
Q ss_pred cCCCceEEEEeccCCCccccccccceeeeccCcEEEEEechhccCCCcEEEeecCceeEeeeccchhhhcccCCCCcccc
Q 000722 233 GGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLAC 312 (1331)
Q Consensus 233 gs~DgtIrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~ 312 (1331)
+|.|++|++||+++-+... .+.||.+.|+.++++| ||.++++|+.||.+.+||++.++++.. -.
T Consensus 168 ~s~DktvKvWnl~~~~l~~------~~~gh~~~v~t~~vSp---DGslcasGgkdg~~~LwdL~~~k~lys-------l~ 231 (315)
T KOG0279|consen 168 ASWDKTVKVWNLRNCQLRT------TFIGHSGYVNTVTVSP---DGSLCASGGKDGEAMLWDLNEGKNLYS-------LE 231 (315)
T ss_pred ccCCceEEEEccCCcchhh------ccccccccEEEEEECC---CCCEEecCCCCceEEEEEccCCceeEe-------cc
Confidence 9999999999999876544 3689999999999999 999999999999999999999998776 46
Q ss_pred cccccccCCCCCCCceeeeeec--ceeeeeecCccccccccccccccCCCccccccccceEEEEEEeccCCccEeeecce
Q 000722 313 HSVASWCHPRAPNLDILTCVKD--SHIWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTN 390 (1331)
Q Consensus 313 H~~~V~svafspdg~lLa~s~D--g~IWdl~~~~~~~l~~~~~~~~~~~~~~~l~~h~~~~I~~la~sp~~~~lLAtGs~ 390 (1331)
|...|.+++|+|+...|+...+ -+|||+...... ..... +..+. .... ......+++|++ +|..|++|..
T Consensus 232 a~~~v~sl~fspnrywL~~at~~sIkIwdl~~~~~v-~~l~~-d~~g~----s~~~-~~~~clslaws~-dG~tLf~g~t 303 (315)
T KOG0279|consen 232 AFDIVNSLCFSPNRYWLCAATATSIKIWDLESKAVV-EELKL-DGIGP----SSKA-GDPICLSLAWSA-DGQTLFAGYT 303 (315)
T ss_pred CCCeEeeEEecCCceeEeeccCCceEEEeccchhhh-hhccc-ccccc----cccc-CCcEEEEEEEcC-CCcEEEeeec
Confidence 7788999999999887754433 369999864210 00000 00000 1111 122677889999 5777999999
Q ss_pred eEEEEeecCCC
Q 000722 391 VGVIISEFDPR 401 (1331)
Q Consensus 391 DG~Il~VWDlr 401 (1331)
|+.| ++|.+.
T Consensus 304 d~~i-rv~qv~ 313 (315)
T KOG0279|consen 304 DNVI-RVWQVA 313 (315)
T ss_pred CCcE-EEEEee
Confidence 9998 899764
No 19
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.95 E-value=2e-28 Score=272.44 Aligned_cols=278 Identities=19% Similarity=0.258 Sum_probs=229.2
Q ss_pred CCcEEEEEeecCCceeEeecCCCceeeeccccceEEeeeccCCcccchhhhhhhhhhcccccccCCCCcccccCCceeEE
Q 000722 11 NDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRGGSVKQV 90 (1331)
Q Consensus 11 s~~V~~lafSPdg~~LaSgs~DGtV~VWD~~tg~~i~s~~~~~~~~i~~vspdg~~Lasgs~d~~g~~l~~l~gg~V~sV 90 (1331)
...|..|.|.|+|+.|++|+..|.+.+|+..+ |..
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~------fnF--------------------------------------- 130 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTS------FNF--------------------------------------- 130 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCce------eeH---------------------------------------
Confidence 35788999999999999999999999999632 110
Q ss_pred eeecchhhHHHHhhhccccccCCcccccccccccCCCCCCCCceEEEEEeeccee-EeeeecccCCCCCccccc-cccce
Q 000722 91 NFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQELD-NKSLV 168 (1331)
Q Consensus 91 af~DgtIrvWdl~tg~~l~~~~~~~~~~~~~~V~svafspdg~~lLasgs~d~iI-vwDl~t~~~~~i~~~~~h-~~~V~ 168 (1331)
......|++.|+++.|++++. ++++|..++.| .|+.+... ++....| ...|+
T Consensus 131 ----------------------EtilQaHDs~Vr~m~ws~~g~-wmiSgD~gG~iKyWqpnmnn---Vk~~~ahh~eaIR 184 (464)
T KOG0284|consen 131 ----------------------ETILQAHDSPVRTMKWSHNGT-WMISGDKGGMIKYWQPNMNN---VKIIQAHHAEAIR 184 (464)
T ss_pred ----------------------HHHhhhhcccceeEEEccCCC-EEEEcCCCceEEecccchhh---hHHhhHhhhhhhh
Confidence 111223377888999999998 99999999998 77766432 3334444 58999
Q ss_pred eeehhhcccCCCcceEeecCCCceeeeeehhhheeehhhcCCCccchhhhhHhhhccccEEEeecCCCceEEEEeccCCC
Q 000722 169 CMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQ 248 (1331)
Q Consensus 169 ~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrVWDl~tg~ 248 (1331)
+++| +|+...++++|+||+|+|||....+.-+.+. ||.-.|.|+.| +|...+|++||.|..|++||.+++.
T Consensus 185 dlaf-----SpnDskF~t~SdDg~ikiWdf~~~kee~vL~-GHgwdVksvdW---HP~kgLiasgskDnlVKlWDprSg~ 255 (464)
T KOG0284|consen 185 DLAF-----SPNDSKFLTCSDDGTIKIWDFRMPKEERVLR-GHGWDVKSVDW---HPTKGLIASGSKDNLVKLWDPRSGS 255 (464)
T ss_pred eecc-----CCCCceeEEecCCCeEEEEeccCCchhheec-cCCCCcceecc---CCccceeEEccCCceeEeecCCCcc
Confidence 9999 7788899999999999999999887777776 99999999996 7888899999999999999999999
Q ss_pred ccccccccceeeeccCcEEEEEechhccCCCcEEEeecCceeEeeeccchhhhcccCCCCcccccccccccCCCCCCCc-
Q 000722 249 DSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLD- 327 (1331)
Q Consensus 249 ~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg~- 327 (1331)
++.+ +.+|...|..+.|+| ++++|+++|.|..++++|+++.+.+++ +++|...|+++.|+|-..
T Consensus 256 cl~t------lh~HKntVl~~~f~~---n~N~Llt~skD~~~kv~DiR~mkEl~~------~r~Hkkdv~~~~WhP~~~~ 320 (464)
T KOG0284|consen 256 CLAT------LHGHKNTVLAVKFNP---NGNWLLTGSKDQSCKVFDIRTMKELFT------YRGHKKDVTSLTWHPLNES 320 (464)
T ss_pred hhhh------hhhccceEEEEEEcC---CCCeeEEccCCceEEEEehhHhHHHHH------hhcchhhheeecccccccc
Confidence 8765 789999999999999 789999999999999999998888777 789999999999999755
Q ss_pred ee-eeeecce--eeeeecCccccccccccccccCCCccccccccceEEEEEEeccCCccEeeecceeEEEEeecCC
Q 000722 328 IL-TCVKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDP 400 (1331)
Q Consensus 328 lL-a~s~Dg~--IWdl~~~~~~~l~~~~~~~~~~~~~~~l~~h~~~~I~~la~sp~~~~lLAtGs~DG~Il~VWDl 400 (1331)
++ ++|.|+. .|.+... .++..+...++..||+++|||. |++|++|++|..+ +.|.-
T Consensus 321 lftsgg~Dgsvvh~~v~~~---------------~p~~~i~~AHd~~iwsl~~hPl-Ghil~tgsnd~t~-rfw~r 379 (464)
T KOG0284|consen 321 LFTSGGSDGSVVHWVVGLE---------------EPLGEIPPAHDGEIWSLAYHPL-GHILATGSNDRTV-RFWTR 379 (464)
T ss_pred ceeeccCCCceEEEecccc---------------ccccCCCcccccceeeeecccc-ceeEeecCCCcce-eeecc
Confidence 44 7889997 4666521 2333333333348999999995 9999999999998 89974
No 20
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.95 E-value=2.1e-28 Score=292.30 Aligned_cols=315 Identities=18% Similarity=0.230 Sum_probs=240.7
Q ss_pred cCCCcEEEEEeecCCceeEeecCCCceeeeccccceEEeeeccCCcccchhhhhhhhhhcccccccCCCCcccccCCcee
Q 000722 9 PTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRGGSVK 88 (1331)
Q Consensus 9 gHs~~V~~lafSPdg~~LaSgs~DGtV~VWD~~tg~~i~s~~~~~~~~i~~vspdg~~Lasgs~d~~g~~l~~l~gg~V~ 88 (1331)
.-...++|+.|++|+.+||.|-.|..|++|.+...+ ++.++... +...+-..+
T Consensus 376 nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~k-l~~lk~~~---------~l~~~d~~s----------------- 428 (707)
T KOG0263|consen 376 NTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKK-LKKLKDAS---------DLSNIDTES----------------- 428 (707)
T ss_pred EcCCcceeEeecCCcchhhccccccEEEEEecchhh-hccccchh---------hhccccccc-----------------
Confidence 344679999999999999999999999999987542 23332110 000000000
Q ss_pred EEeeecchhhHHHHhhhccccccCCcccccccccccCCCCCCCCceEEEEEeeccee-EeeeecccCCCCCccccccccc
Q 000722 89 QVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQELDNKSL 167 (1331)
Q Consensus 89 sVaf~DgtIrvWdl~tg~~l~~~~~~~~~~~~~~V~svafspdg~~lLasgs~d~iI-vwDl~t~~~~~i~~~~~h~~~V 167 (1331)
.|-.+.+-|...... .....+| .++|..+.|+|+.+ +|++|++|..+ +|.+.+.. ++....+|..+|
T Consensus 429 ----ad~~~~~~D~~~~~~----~~~L~GH-~GPVyg~sFsPd~r-fLlScSED~svRLWsl~t~s--~~V~y~GH~~PV 496 (707)
T KOG0263|consen 429 ----ADVDVDMLDDDSSGT----SRTLYGH-SGPVYGCSFSPDRR-FLLSCSEDSSVRLWSLDTWS--CLVIYKGHLAPV 496 (707)
T ss_pred ----cchhhhhccccCCce----eEEeecC-CCceeeeeeccccc-ceeeccCCcceeeeecccce--eEEEecCCCcce
Confidence 111222222222211 1234555 88999999999997 99999999988 78888743 556678999999
Q ss_pred eeeehhhcccCCCcceEeecCCCceeeeeehhhheeehhhcCCCccchhhhhHhhhccccEEEeecCCCceEEEEeccCC
Q 000722 168 VCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHG 247 (1331)
Q Consensus 168 ~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrVWDl~tg 247 (1331)
.++.| +|.|.+++|+|.|++-++|.....+..+.+. ||...|.|+. |+|+.+++++||.|.+||+||+.+|
T Consensus 497 wdV~F-----~P~GyYFatas~D~tArLWs~d~~~PlRifa-ghlsDV~cv~---FHPNs~Y~aTGSsD~tVRlWDv~~G 567 (707)
T KOG0263|consen 497 WDVQF-----APRGYYFATASHDQTARLWSTDHNKPLRIFA-GHLSDVDCVS---FHPNSNYVATGSSDRTVRLWDVSTG 567 (707)
T ss_pred eeEEe-----cCCceEEEecCCCceeeeeecccCCchhhhc-ccccccceEE---ECCcccccccCCCCceEEEEEcCCC
Confidence 99999 6789999999999999999999999999997 9999999998 8999999999999999999999999
Q ss_pred CccccccccceeeeccCcEEEEEechhccCCCcEEEeecCceeEeeeccchhhhcccCCCCcccccccccccCCCCCCCc
Q 000722 248 QDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLD 327 (1331)
Q Consensus 248 ~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg~ 327 (1331)
..++. +.||.++|.+++|+| +|++|++|+.||.|++||+.+++.+.. +.+|++.|.++.|+.+|.
T Consensus 568 ~~VRi------F~GH~~~V~al~~Sp---~Gr~LaSg~ed~~I~iWDl~~~~~v~~------l~~Ht~ti~SlsFS~dg~ 632 (707)
T KOG0263|consen 568 NSVRI------FTGHKGPVTALAFSP---CGRYLASGDEDGLIKIWDLANGSLVKQ------LKGHTGTIYSLSFSRDGN 632 (707)
T ss_pred cEEEE------ecCCCCceEEEEEcC---CCceEeecccCCcEEEEEcCCCcchhh------hhcccCceeEEEEecCCC
Confidence 87654 699999999999999 899999999999999999999998877 789999999999999999
Q ss_pred ee-eeeecce--eeeeecCccccccccc---------cccccCCCccccccccceEEEEEEeccCCccEeeec
Q 000722 328 IL-TCVKDSH--IWAIEHPTYSALTRPL---------CELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATG 388 (1331)
Q Consensus 328 lL-a~s~Dg~--IWdl~~~~~~~l~~~~---------~~~~~~~~~~~l~~h~~~~I~~la~sp~~~~lLAtG 388 (1331)
+| ++|.|++ +||+...........+ ....+...+.++..... +|.++.|.. ....+++|
T Consensus 633 vLasgg~DnsV~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llgs~~tK~t-pv~~l~Ftr-rNl~L~~g 703 (707)
T KOG0263|consen 633 VLASGGADNSVRLWDLTKVIELLNLGHISTSNSAITQENNASSLLLGSFYTKNT-PVVGLHFTR-RNLLLAVG 703 (707)
T ss_pred EEEecCCCCeEEEEEchhhcccccccccccccccccccCCCCcceeeeeeecCc-eEEEEEEec-cceeEEec
Confidence 77 6778885 8999864332000000 01122234455555556 888888887 34545554
No 21
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.95 E-value=8.1e-27 Score=266.30 Aligned_cols=451 Identities=16% Similarity=0.202 Sum_probs=293.7
Q ss_pred EEEeecCCceeEeecCCCceeeeccccceEEeeeccCCcccchhh--hhhhhhhcccccccCCCCcccccCCceeEEeee
Q 000722 16 KIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLV--GAKLEKLAEGELEHKGKPTEAMRGGSVKQVNFY 93 (1331)
Q Consensus 16 ~lafSPdg~~LaSgs~DGtV~VWD~~tg~~i~s~~~~~~~~i~~v--spdg~~Lasgs~d~~g~~l~~l~gg~V~sVaf~ 93 (1331)
-|.-.|.|..++-+ ..+.|.+-+++.......+..| ...+... +|.|.+++++. .
T Consensus 23 ~ig~dpkgd~ilY~-nGksv~ir~i~~~~~~~iYtEH-~~~vtVAkySPsG~yiASGD---------------------~ 79 (603)
T KOG0318|consen 23 IIGGDPKGDNILYT-NGKSVIIRNIDNPASVDIYTEH-AHQVTVAKYSPSGFYIASGD---------------------V 79 (603)
T ss_pred EeccCCCCCeEEEe-CCCEEEEEECCCccceeeeccc-cceeEEEEeCCCceEEeecC---------------------C
Confidence 34456777655544 3456778888877766666643 3333333 38888888875 4
Q ss_pred cchhhHHHHhhhc-cccccCCcccccccccccCCCCCCCCceEEEEEeecc----eeEeeeecccCCCCCccccccccce
Q 000722 94 DDDVRFWQLWRNR-AAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNK----AIFLDLVTMRGRDIPKQELDNKSLV 168 (1331)
Q Consensus 94 DgtIrvWdl~tg~-~l~~~~~~~~~~~~~~V~svafspdg~~lLasgs~d~----iIvwDl~t~~~~~i~~~~~h~~~V~ 168 (1331)
.|.|||||..... .+..+.+.+ .++|..++|+.++++++++|.... ...||.-+ .+..+.+|...|+
T Consensus 80 sG~vRIWdtt~~~hiLKnef~v~----aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~----SvGei~GhSr~in 151 (603)
T KOG0318|consen 80 SGKVRIWDTTQKEHILKNEFQVL----AGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGN----SVGEITGHSRRIN 151 (603)
T ss_pred cCcEEEEeccCcceeeeeeeeec----ccccccceeCCCCcEEEEEecCccceeEEEEecCCC----ccceeeccceeEe
Confidence 6899999976643 222223333 456899999999997777764332 22455433 4556789999999
Q ss_pred eeehhhcccCCCcceEeecCCCceeeeeehhhheeehhhcCCCccchhhhhHhhhccccEEEeecCCCceEEEEeccCCC
Q 000722 169 CMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQ 248 (1331)
Q Consensus 169 ~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrVWDl~tg~ 248 (1331)
+++|-|. ..-++++|++|++|.+|+-.-.+...++. .|...|+|+. |+|||.+|+|.+.||+|.+||-.+++
T Consensus 152 s~~~Kps----RPfRi~T~sdDn~v~ffeGPPFKFk~s~r-~HskFV~~VR---ysPDG~~Fat~gsDgki~iyDGktge 223 (603)
T KOG0318|consen 152 SVDFKPS----RPFRIATGSDDNTVAFFEGPPFKFKSSFR-EHSKFVNCVR---YSPDGSRFATAGSDGKIYIYDGKTGE 223 (603)
T ss_pred eeeccCC----CceEEEeccCCCeEEEeeCCCeeeeeccc-ccccceeeEE---ECCCCCeEEEecCCccEEEEcCCCcc
Confidence 9999542 23479999999999999977777777776 8999999998 89999999999999999999999998
Q ss_pred ccccccccceeeeccCcEEEEEechhccCCCcEEEeecCceeEeeeccchhhhcccCCCCcccccccccccCCCCCCCce
Q 000722 249 DSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDI 328 (1331)
Q Consensus 249 ~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg~l 328 (1331)
.+.++.. -.+|.+.|.+++|+| |+..++|+|.|.++||||+.+.++++++....++. ...| .+.|- +..+
T Consensus 224 ~vg~l~~---~~aHkGsIfalsWsP---Ds~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~--dqqv-G~lWq-kd~l 293 (603)
T KOG0318|consen 224 KVGELED---SDAHKGSIFALSWSP---DSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVE--DQQV-GCLWQ-KDHL 293 (603)
T ss_pred EEEEecC---CCCccccEEEEEECC---CCceEEEecCCceEEEEEeeccceEEEeecCCchh--ceEE-EEEEe-CCeE
Confidence 7765321 358999999999999 89999999999999999999999988875543321 1222 33444 4557
Q ss_pred eeeeeccee--eeeecCccccccccccccccCCCccccccccceEEEEEEeccCCccEeeecceeEEEEeecCCCCCCCC
Q 000722 329 LTCVKDSHI--WAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPRSLPAV 406 (1331)
Q Consensus 329 La~s~Dg~I--Wdl~~~~~~~l~~~~~~~~~~~~~~~l~~h~~~~I~~la~sp~~~~lLAtGs~DG~Il~VWDlr~~p~i 406 (1331)
++.+-+|.| ++.... .++..+.+|.+ .|+++..+|+ +.+|.+|+.||.| .-|+..+....
T Consensus 294 ItVSl~G~in~ln~~d~---------------~~~~~i~GHnK-~ITaLtv~~d-~~~i~SgsyDG~I-~~W~~~~g~~~ 355 (603)
T KOG0318|consen 294 ITVSLSGTINYLNPSDP---------------SVLKVISGHNK-SITALTVSPD-GKTIYSGSYDGHI-NSWDSGSGTSD 355 (603)
T ss_pred EEEEcCcEEEEecccCC---------------Chhheeccccc-ceeEEEEcCC-CCEEEeeccCceE-EEEecCCcccc
Confidence 788888863 444432 25667889999 9999999995 6889999999999 69998653332
Q ss_pred CCCCCCCCC-------CCcceEEE--eeeeeeeeeeecccCCCC---CCCCC---CCccccC-CCCCCCCchhhHhhhcc
Q 000722 407 APLPTPSGS-------RDHSAVYI--VERELKLVNFQLSSAANP---SLGNN---GSLSETG-RLKGDLPDALQIKQIKK 470 (1331)
Q Consensus 407 ~~~~t~s~~-------~~~s~~~~--~~~~l~l~~fq~~~~~~~---~lg~~---~~ls~~G-~~~~~~~e~l~v~~~~r 470 (1331)
......... .+..-+|. -++.++...+....-... .++.. ....++| -........+.+.+..+
T Consensus 356 ~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~ 435 (603)
T KOG0318|consen 356 RLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQT 435 (603)
T ss_pred ccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCC
Confidence 211110000 01011121 233344332211100000 01000 0011122 11122223333333222
Q ss_pred c-cccccCCCceeEEEEeeCCcEEEEEcCCCceeeEEeecceeEe-------ecCcceeeehhcchhhHHHhh
Q 000722 471 H-ISTPVPHDSYSILSVSSSGKYLAVVWPDIPYFSVYKVSDWSIV-------DSGSARLLAWDTCRDRFAILE 535 (1331)
Q Consensus 471 ~-i~t~~~~e~~s~ls~SpdGrylaVv~~~~g~y~Iy~i~~~~~i-------~~G~~~~~aWs~~~~~fAvl~ 535 (1331)
. ...+...+. +.++++|+|.++ ++...++.+.||+++...+. .+|..+.++++|+...||+-+
T Consensus 436 ~~~~~~~~y~~-s~vAv~~~~~~v-aVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~D 506 (603)
T KOG0318|consen 436 KVSSIPIGYES-SAVAVSPDGSEV-AVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGD 506 (603)
T ss_pred cceeecccccc-ceEEEcCCCCEE-EEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEec
Confidence 1 222333343 589999999999 45567788999998764322 266677777777666655554
No 22
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.95 E-value=2.8e-27 Score=253.12 Aligned_cols=251 Identities=16% Similarity=0.268 Sum_probs=201.8
Q ss_pred ccccccCCCcEEEEEeecCCceeEeecCCCceeeeccccceEEeeeccCCcccchhhhhhhhhhcccccccCCCCccccc
Q 000722 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMR 83 (1331)
Q Consensus 4 l~~L~gHs~~V~~lafSPdg~~LaSgs~DGtV~VWD~~tg~~i~s~~~~~~~~i~~vspdg~~Lasgs~d~~g~~l~~l~ 83 (1331)
++.|.||+..|..++.++||++.++++.|+++++||+.+|+..+.|..|
T Consensus 56 ~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH------------------------------- 104 (315)
T KOG0279|consen 56 VRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGH------------------------------- 104 (315)
T ss_pred eeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEec-------------------------------
Confidence 6789999999999999999999999999999999999999888888744
Q ss_pred CCceeEEeeecchhhHHHHhhhccccccCCcccccccccccCCCCCCCCceEEEEEeeccee-EeeeecccCCCCCcccc
Q 000722 84 GGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQEL 162 (1331)
Q Consensus 84 gg~V~sVaf~DgtIrvWdl~tg~~l~~~~~~~~~~~~~~V~svafspdg~~lLasgs~d~iI-vwDl~t~~~~~i~~~~~ 162 (1331)
...|.+++|++|.+ .+++|+.|+.+ +||....- +.......
T Consensus 105 ------------------------------------~~dVlsva~s~dn~-qivSGSrDkTiklwnt~g~c-k~t~~~~~ 146 (315)
T KOG0279|consen 105 ------------------------------------TKDVLSVAFSTDNR-QIVSGSRDKTIKLWNTLGVC-KYTIHEDS 146 (315)
T ss_pred ------------------------------------CCceEEEEecCCCc-eeecCCCcceeeeeeecccE-EEEEecCC
Confidence 23356778899987 89999999988 88876532 11111122
Q ss_pred ccccceeeehhhcccCCCcceEeecCCCceeeeeehhhheeehhhcCCCccchhhhhHhhhccccEEEeecCCCceEEEE
Q 000722 163 DNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILW 242 (1331)
Q Consensus 163 h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrVW 242 (1331)
+.+.|.|+.|+| +++..+|++++.|++|++||+++.+....+. ||+++++.+. ++|||.++++|+.||.+.+|
T Consensus 147 ~~~WVscvrfsP---~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~-gh~~~v~t~~---vSpDGslcasGgkdg~~~Lw 219 (315)
T KOG0279|consen 147 HREWVSCVRFSP---NESNPIIVSASWDKTVKVWNLRNCQLRTTFI-GHSGYVNTVT---VSPDGSLCASGGKDGEAMLW 219 (315)
T ss_pred CcCcEEEEEEcC---CCCCcEEEEccCCceEEEEccCCcchhhccc-cccccEEEEE---ECCCCCEEecCCCCceEEEE
Confidence 378999999977 3458899999999999999999999988887 9999999998 89999999999999999999
Q ss_pred eccCCCccccccccceeeeccCcEEEEEechhccCCCcEEEeecCceeEeeeccchhhhcccCCCCcc---ccccccccc
Q 000722 243 SADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKL---ACHSVASWC 319 (1331)
Q Consensus 243 Dl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l---~~H~~~V~s 319 (1331)
|++.++.+.. .+|...|++++|+| +. +-+....+..|+|||+.++.++..+++-..- ........+
T Consensus 220 dL~~~k~lys-------l~a~~~v~sl~fsp---nr-ywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~cls 288 (315)
T KOG0279|consen 220 DLNEGKNLYS-------LEAFDIVNSLCFSP---NR-YWLCAATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLS 288 (315)
T ss_pred EccCCceeEe-------ccCCCeEeeEEecC---Cc-eeEeeccCCceEEEeccchhhhhhccccccccccccCCcEEEE
Confidence 9999987553 46888999999999 44 5555555667999999999988776542111 111234458
Q ss_pred CCCCCCCcee-eeeecc--eeeeee
Q 000722 320 HPRAPNLDIL-TCVKDS--HIWAIE 341 (1331)
Q Consensus 320 vafspdg~lL-a~s~Dg--~IWdl~ 341 (1331)
++|+++|+.| ++-.|+ ++|.+.
T Consensus 289 laws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 289 LAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred EEEcCCCcEEEeeecCCcEEEEEee
Confidence 8999999965 555666 478765
No 23
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.94 E-value=2.9e-26 Score=255.06 Aligned_cols=284 Identities=21% Similarity=0.331 Sum_probs=227.8
Q ss_pred ccccccCCCcEEEEEeecCCceeEeecCCCceeeeccccceEEeeeccCCcccchhhhhhhhhhcccccccCCCCccccc
Q 000722 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMR 83 (1331)
Q Consensus 4 l~~L~gHs~~V~~lafSPdg~~LaSgs~DGtV~VWD~~tg~~i~s~~~~~~~~i~~vspdg~~Lasgs~d~~g~~l~~l~ 83 (1331)
+++|++|.+.|++++|+|++++|++++.||.|++||+.+++....+..+
T Consensus 2 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~------------------------------- 50 (289)
T cd00200 2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGH------------------------------- 50 (289)
T ss_pred chHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecC-------------------------------
Confidence 5678899999999999999999999999999999999877655544422
Q ss_pred CCceeEEeeecchhhHHHHhhhccccccCCcccccccccccCCCCCCCCceEEEEEeeccee-EeeeecccCCCCCcccc
Q 000722 84 GGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQEL 162 (1331)
Q Consensus 84 gg~V~sVaf~DgtIrvWdl~tg~~l~~~~~~~~~~~~~~V~svafspdg~~lLasgs~d~iI-vwDl~t~~~~~i~~~~~ 162 (1331)
...+..+.|+++++ .+++++.++.+ +||..+++ .+..+..
T Consensus 51 ------------------------------------~~~i~~~~~~~~~~-~l~~~~~~~~i~i~~~~~~~--~~~~~~~ 91 (289)
T cd00200 51 ------------------------------------TGPVRDVAASADGT-YLASGSSDKTIRLWDLETGE--CVRTLTG 91 (289)
T ss_pred ------------------------------------CcceeEEEECCCCC-EEEEEcCCCeEEEEEcCccc--ceEEEec
Confidence 11233466788886 66777766655 89988643 3445667
Q ss_pred ccccceeeehhhcccCCCcceEeecCCCceeeeeehhhheeehhhcCCCccchhhhhHhhhccccEEEeecCCCceEEEE
Q 000722 163 DNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILW 242 (1331)
Q Consensus 163 h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrVW 242 (1331)
|...+.++.| ++++.++++++.||.|++||+.+++....+. .|...+.++. +++++.++++++.|+.|++|
T Consensus 92 ~~~~i~~~~~-----~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~i~~~~---~~~~~~~l~~~~~~~~i~i~ 162 (289)
T cd00200 92 HTSYVSSVAF-----SPDGRILSSSSRDKTIKVWDVETGKCLTTLR-GHTDWVNSVA---FSPDGTFVASSSQDGTIKLW 162 (289)
T ss_pred cCCcEEEEEE-----cCCCCEEEEecCCCeEEEEECCCcEEEEEec-cCCCcEEEEE---EcCcCCEEEEEcCCCcEEEE
Confidence 7889999999 5678889988889999999999888888876 8999999998 68888899988889999999
Q ss_pred eccCCCccccccccceeeeccCcEEEEEechhccCCCcEEEeecCceeEeeeccchhhhcccCCCCcccccccccccCCC
Q 000722 243 SADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPR 322 (1331)
Q Consensus 243 Dl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svaf 322 (1331)
|+++++.... +..|...|.++.|+| ++..+++++.|+.|++||+++++.+.. +..|...+.++.|
T Consensus 163 d~~~~~~~~~------~~~~~~~i~~~~~~~---~~~~l~~~~~~~~i~i~d~~~~~~~~~------~~~~~~~i~~~~~ 227 (289)
T cd00200 163 DLRTGKCVAT------LTGHTGEVNSVAFSP---DGEKLLSSSSDGTIKLWDLSTGKCLGT------LRGHENGVNSVAF 227 (289)
T ss_pred Ecccccccee------EecCccccceEEECC---CcCEEEEecCCCcEEEEECCCCceecc------hhhcCCceEEEEE
Confidence 9987765443 567888999999999 788899999999999999998776655 4577788999999
Q ss_pred CCCCceeeeee-cce--eeeeecCccccccccccccccCCCccccccccceEEEEEEeccCCccEeeecceeEEEEeecC
Q 000722 323 APNLDILTCVK-DSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFD 399 (1331)
Q Consensus 323 spdg~lLa~s~-Dg~--IWdl~~~~~~~l~~~~~~~~~~~~~~~l~~h~~~~I~~la~sp~~~~lLAtGs~DG~Il~VWD 399 (1331)
++++.+++++. |+. +|++... .....+..|.. .|.++.|++ ++.++++++.||.+ ++|+
T Consensus 228 ~~~~~~~~~~~~~~~i~i~~~~~~---------------~~~~~~~~~~~-~i~~~~~~~-~~~~l~~~~~d~~i-~iw~ 289 (289)
T cd00200 228 SPDGYLLASGSEDGTIRVWDLRTG---------------ECVQTLSGHTN-SVTSLAWSP-DGKRLASGSADGTI-RIWD 289 (289)
T ss_pred cCCCcEEEEEcCCCcEEEEEcCCc---------------eeEEEccccCC-cEEEEEECC-CCCEEEEecCCCeE-EecC
Confidence 99988776554 775 7888743 12334445666 899999999 46779999999998 8996
No 24
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.94 E-value=2.9e-26 Score=270.32 Aligned_cols=342 Identities=15% Similarity=0.194 Sum_probs=258.5
Q ss_pred cccCCCcEEEEEeecCCceeEeecCCCceeeeccccceEEeeeccCCcccchhhh--hhhhhhcccccccCCCCcccccC
Q 000722 7 FRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVG--AKLEKLAEGELEHKGKPTEAMRG 84 (1331)
Q Consensus 7 L~gHs~~V~~lafSPdg~~LaSgs~DGtV~VWD~~tg~~i~s~~~~~~~~i~~vs--pdg~~Lasgs~d~~g~~l~~l~g 84 (1331)
|......|+|.+||+.-..|++|-.+|...++++....+++.+..+. ..+..+. ..|..|++++.
T Consensus 261 ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~-~~I~t~~~N~tGDWiA~g~~------------ 327 (893)
T KOG0291|consen 261 LNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISD-QKILTVSFNSTGDWIAFGCS------------ 327 (893)
T ss_pred ecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeeccc-ceeeEEEecccCCEEEEcCC------------
Confidence 34445889999999999999999999999999999999999988553 2222222 33555555531
Q ss_pred CceeEEeeecchhhHHHHhhhccccccCCcccccccccccCCCCCCCCceEEEEEeeccee-EeeeecccCCCCCccccc
Q 000722 85 GSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQELD 163 (1331)
Q Consensus 85 g~V~sVaf~DgtIrvWdl~tg~~l~~~~~~~~~~~~~~V~svafspdg~~lLasgs~d~iI-vwDl~t~~~~~i~~~~~h 163 (1331)
.-|.+-||++.+..-+ ..+.+| ...+.+++++|||+ ++++|++|+-+ +||.+++ .|+.++..|
T Consensus 328 --------klgQLlVweWqsEsYV----lKQQgH-~~~i~~l~YSpDgq-~iaTG~eDgKVKvWn~~Sg--fC~vTFteH 391 (893)
T KOG0291|consen 328 --------KLGQLLVWEWQSESYV----LKQQGH-SDRITSLAYSPDGQ-LIATGAEDGKVKVWNTQSG--FCFVTFTEH 391 (893)
T ss_pred --------ccceEEEEEeecccee----eecccc-ccceeeEEECCCCc-EEEeccCCCcEEEEeccCc--eEEEEeccC
Confidence 2356778887666543 234455 77899999999998 99999999877 8998874 477789999
Q ss_pred cccceeeehhhcccCCCcceEeecCCCceeeeeehhhheeehhhcCCCccchhhhhHhhhccccEEEeecCCCce-EEEE
Q 000722 164 NKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGL-LILW 242 (1331)
Q Consensus 164 ~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~Dgt-IrVW 242 (1331)
...|+.+.| +..|+.+++.|.||+||.||+...+..++|.......-.|++ ..|.|.+++.|+.|.. |.||
T Consensus 392 ts~Vt~v~f-----~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~Qfscva---vD~sGelV~AG~~d~F~IfvW 463 (893)
T KOG0291|consen 392 TSGVTAVQF-----TARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVA---VDPSGELVCAGAQDSFEIFVW 463 (893)
T ss_pred CCceEEEEE-----EecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEE---EcCCCCEEEeeccceEEEEEE
Confidence 999999999 678999999999999999999999999999755556667776 7888999999998875 9999
Q ss_pred eccCCCccccccccceeeeccCcEEEEEechhccCCCcEEEeecCceeEeeeccchhhhcccCCCCcccccccccccCCC
Q 000722 243 SADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPR 322 (1331)
Q Consensus 243 Dl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svaf 322 (1331)
++.+|+.+.. +.||+++|.+++|+| .+..|+++|.|++||+||+-....... --.+...+..++|
T Consensus 464 S~qTGqllDi------LsGHEgPVs~l~f~~---~~~~LaS~SWDkTVRiW~if~s~~~vE------tl~i~sdvl~vsf 528 (893)
T KOG0291|consen 464 SVQTGQLLDI------LSGHEGPVSGLSFSP---DGSLLASGSWDKTVRIWDIFSSSGTVE------TLEIRSDVLAVSF 528 (893)
T ss_pred EeecCeeeeh------hcCCCCcceeeEEcc---ccCeEEeccccceEEEEEeeccCceee------eEeeccceeEEEE
Confidence 9999997654 799999999999999 899999999999999999865432111 1345667889999
Q ss_pred CCCCcee-eeeecce--eeeeecCccccccccccccccCC-Ccccc----ccccceEEEEEEeccCCccEeeecceeEEE
Q 000722 323 APNLDIL-TCVKDSH--IWAIEHPTYSALTRPLCELSSLV-PPQVL----AHHKKLRVYCMVAHSLQPHLVATGTNVGVI 394 (1331)
Q Consensus 323 spdg~lL-a~s~Dg~--IWdl~~~~~~~l~~~~~~~~~~~-~~~~l----~~h~~~~I~~la~sp~~~~lLAtGs~DG~I 394 (1331)
+|+|+-| ++.-||. +||+..........-..+..... ..-.+ ...++ .++.+++++ ++..|.+|+....|
T Consensus 529 rPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K-~Ftti~ySa-DG~~IlAgG~sn~i 606 (893)
T KOG0291|consen 529 RPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGK-TFTTICYSA-DGKCILAGGESNSI 606 (893)
T ss_pred cCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCC-ceEEEEEcC-CCCEEEecCCcccE
Confidence 9999966 5667774 89987542221111111111111 00011 11224 799999999 57778888888887
Q ss_pred EeecCCCCC
Q 000722 395 ISEFDPRSL 403 (1331)
Q Consensus 395 l~VWDlr~~ 403 (1331)
++||+++.
T Consensus 607 -CiY~v~~~ 614 (893)
T KOG0291|consen 607 -CIYDVPEG 614 (893)
T ss_pred -EEEECchh
Confidence 79998764
No 25
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.94 E-value=1.4e-26 Score=252.13 Aligned_cols=282 Identities=19% Similarity=0.279 Sum_probs=225.3
Q ss_pred CCCcEEEEEeecCCceeEeecCCCceeeeccccceEEeeeccCCcccchhhhhhhhhhcccccccCCCCcccccCCceeE
Q 000722 10 TNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRGGSVKQ 89 (1331)
Q Consensus 10 Hs~~V~~lafSPdg~~LaSgs~DGtV~VWD~~tg~~i~s~~~~~~~~i~~vspdg~~Lasgs~d~~g~~l~~l~gg~V~s 89 (1331)
....|.|+.+. ...+++|..|++|+|||..+..+++.+.+| .|+|.+
T Consensus 196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L~GH-------------------------------tGSVLC 242 (499)
T KOG0281|consen 196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKILTGH-------------------------------TGSVLC 242 (499)
T ss_pred cCCceEEEEec--chhhhcccccCceEEeccccHHHHHhhhcC-------------------------------CCcEEe
Confidence 45679999875 567999999999999998876666666532 244444
Q ss_pred EeeecchhhHHHHhhhccccccCCcccccccccccCCCCCCCCceEEEEEeeccee-EeeeecccCCCCCccccccccce
Q 000722 90 VNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQELDNKSLV 168 (1331)
Q Consensus 90 Vaf~DgtIrvWdl~tg~~l~~~~~~~~~~~~~~V~svafspdg~~lLasgs~d~iI-vwDl~t~~~~~i~~~~~h~~~V~ 168 (1331)
+.| +.+ ++++|+.|..+ +||+++++ .+.++..|...|.
T Consensus 243 ------------------------------------Lqy--d~r-viisGSSDsTvrvWDv~tge--~l~tlihHceaVL 281 (499)
T KOG0281|consen 243 ------------------------------------LQY--DER-VIVSGSSDSTVRVWDVNTGE--PLNTLIHHCEAVL 281 (499)
T ss_pred ------------------------------------eec--cce-EEEecCCCceEEEEeccCCc--hhhHHhhhcceeE
Confidence 333 344 89999988877 89999965 5778899999999
Q ss_pred eeehhhcccCCCcceEeecCCCceeeeeehhhhe---eehhhcCCCccchhhhhHhhhccccEEEeecCCCceEEEEecc
Q 000722 169 CMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWK---LVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSAD 245 (1331)
Q Consensus 169 ~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~~---~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrVWDl~ 245 (1331)
.+.| +..+++++|.|.+|++||+.... +.+.+. ||...|+.+. | +.++++++|.|.+|++|++.
T Consensus 282 hlrf-------~ng~mvtcSkDrsiaVWdm~sps~it~rrVLv-GHrAaVNvVd-f----d~kyIVsASgDRTikvW~~s 348 (499)
T KOG0281|consen 282 HLRF-------SNGYMVTCSKDRSIAVWDMASPTDITLRRVLV-GHRAAVNVVD-F----DDKYIVSASGDRTIKVWSTS 348 (499)
T ss_pred EEEE-------eCCEEEEecCCceeEEEeccCchHHHHHHHHh-hhhhheeeec-c----ccceEEEecCCceEEEEecc
Confidence 9999 56799999999999999997542 334444 9999999997 2 56699999999999999999
Q ss_pred CCCccccccccceeeeccCcEEEEEechhccCCCcEEEeecCceeEeeeccchhhhcccCCCCcccccccccccCCCCCC
Q 000722 246 HGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPN 325 (1331)
Q Consensus 246 tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspd 325 (1331)
+++++++ +.+|..+|-|+.+ .++++++||.|.+||+||+..|.+++. +.||..-|.|+.|..
T Consensus 349 t~efvRt------l~gHkRGIAClQY-----r~rlvVSGSSDntIRlwdi~~G~cLRv------LeGHEeLvRciRFd~- 410 (499)
T KOG0281|consen 349 TCEFVRT------LNGHKRGIACLQY-----RDRLVVSGSSDNTIRLWDIECGACLRV------LEGHEELVRCIRFDN- 410 (499)
T ss_pred ceeeehh------hhcccccceehhc-----cCeEEEecCCCceEEEEeccccHHHHH------HhchHHhhhheeecC-
Confidence 9987765 7999999999998 468999999999999999999999988 799999999999954
Q ss_pred Cceeeeeecce--eeeeecCccccccccccccccCCCccccccccceEEEEEEeccCCccEeeecceeEEEEeecCCCCC
Q 000722 326 LDILTCVKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPRSL 403 (1331)
Q Consensus 326 g~lLa~s~Dg~--IWdl~~~~~~~l~~~~~~~~~~~~~~~l~~h~~~~I~~la~sp~~~~lLAtGs~DG~Il~VWDlr~~ 403 (1331)
.++++|+.||+ |||+....- .....+..++.++..|.+ +|..+.|.. +.+++.+.|..|+ |||.-..
T Consensus 411 krIVSGaYDGkikvWdl~aald------pra~~~~~Cl~~lv~hsg-RVFrLQFD~---fqIvsssHddtIL-iWdFl~~ 479 (499)
T KOG0281|consen 411 KRIVSGAYDGKIKVWDLQAALD------PRAPASTLCLRTLVEHSG-RVFRLQFDE---FQIISSSHDDTIL-IWDFLNG 479 (499)
T ss_pred ceeeeccccceEEEEecccccC------CcccccchHHHhhhhccc-eeEEEeecc---eEEEeccCCCeEE-EEEcCCC
Confidence 45889999996 899986421 111223345666777888 999999875 3577777777874 9998765
Q ss_pred CCCC
Q 000722 404 PAVA 407 (1331)
Q Consensus 404 p~i~ 407 (1331)
++..
T Consensus 480 ~~~~ 483 (499)
T KOG0281|consen 480 PPSA 483 (499)
T ss_pred Cccc
Confidence 5543
No 26
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.94 E-value=9e-27 Score=256.81 Aligned_cols=335 Identities=16% Similarity=0.143 Sum_probs=270.4
Q ss_pred cccccccCCCcEEEEEeecCCceeEeecCCCceeeeccccceEEeeeccCCcccchhhh--hhhhhhcccccccCCCCcc
Q 000722 3 RLKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVG--AKLEKLAEGELEHKGKPTE 80 (1331)
Q Consensus 3 ~l~~L~gHs~~V~~lafSPdg~~LaSgs~DGtV~VWD~~tg~~i~s~~~~~~~~i~~vs--pdg~~Lasgs~d~~g~~l~ 80 (1331)
.+.+|..|++.|.+++.||+.++++||+.|..-.||+..+|..+.++. +|.+.+.++. .++.+|+++.
T Consensus 56 S~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~elt-gHKDSVt~~~FshdgtlLATGd--------- 125 (399)
T KOG0296|consen 56 SLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELT-GHKDSVTCCSFSHDGTLLATGD--------- 125 (399)
T ss_pred ceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEec-CCCCceEEEEEccCceEEEecC---------
Confidence 367899999999999999999999999999999999999999888887 6667777776 7888888876
Q ss_pred cccCCceeEEeeecchhhHHHHhhhccccccCCcccccccccccCCCCCCCCceEEEEEeeccee-EeeeecccCCCCCc
Q 000722 81 AMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPK 159 (1331)
Q Consensus 81 ~l~gg~V~sVaf~DgtIrvWdl~tg~~l~~~~~~~~~~~~~~V~svafspdg~~lLasgs~d~iI-vwDl~t~~~~~i~~ 159 (1331)
.+|.|+||+..++...... ... -..+--+.|||.+. +|+.|+.|+.+ +|.+.+. ...+.
T Consensus 126 ------------msG~v~v~~~stg~~~~~~----~~e-~~dieWl~WHp~a~-illAG~~DGsvWmw~ip~~--~~~kv 185 (399)
T KOG0296|consen 126 ------------MSGKVLVFKVSTGGEQWKL----DQE-VEDIEWLKWHPRAH-ILLAGSTDGSVWMWQIPSQ--ALCKV 185 (399)
T ss_pred ------------CCccEEEEEcccCceEEEe----ecc-cCceEEEEeccccc-EEEeecCCCcEEEEECCCc--ceeeE
Confidence 5788999998877543211 111 22233478999886 88999988887 8877763 34566
Q ss_pred cccccccceeeehhhcccCCCcceEeecCCCceeeeeehhhheeehhhcCCCccchhhhhHhhhccccEEEeecCCCceE
Q 000722 160 QELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLL 239 (1331)
Q Consensus 160 ~~~h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtI 239 (1331)
+.+|+.+++|-.| .|+|+.+++|..||+|++||+.+++++..+.........|+. ++..+..+++|+.++.+
T Consensus 186 ~~Gh~~~ct~G~f-----~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~---~~~~~~~~~~g~~e~~~ 257 (399)
T KOG0296|consen 186 MSGHNSPCTCGEF-----IPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCIS---LNLAGSTLTKGNSEGVA 257 (399)
T ss_pred ecCCCCCcccccc-----cCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccc---cccccceeEeccCCccE
Confidence 8899999999999 678999999999999999999999998887644556677776 78889999999999999
Q ss_pred EEEeccCCCccccccc--cceeeeccCcEEEEEechhccCCCcEEEeecCceeEeeeccchhhhcccCCCCccccccccc
Q 000722 240 ILWSADHGQDSRELVP--KLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVAS 317 (1331)
Q Consensus 240 rVWDl~tg~~~~~~~~--~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V 317 (1331)
++-+..+|+.+....+ ......|+..+.|+.+.|.+..-++.++|+-||+|.|||+...+..+. ..|...|
T Consensus 258 ~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~-------c~he~~V 330 (399)
T KOG0296|consen 258 CGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHI-------CEHEDGV 330 (399)
T ss_pred EEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhhee-------ccCCCce
Confidence 9999888876543221 111235667777887777544678999999999999999988765443 5688889
Q ss_pred ccCCCCCCCceeeeeecce--eeeeecCccccccccccccccCCCccccccccceEEEEEEeccCCccEeeecceeEEEE
Q 000722 318 WCHPRAPNLDILTCVKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVII 395 (1331)
Q Consensus 318 ~svafspdg~lLa~s~Dg~--IWdl~~~~~~~l~~~~~~~~~~~~~~~l~~h~~~~I~~la~sp~~~~lLAtGs~DG~Il 395 (1331)
..+.|-+...+++++.+|. .||.+++ ....++.+|.. .|.+++.+| +.++++|+++|+..
T Consensus 331 ~~l~w~~t~~l~t~c~~g~v~~wDaRtG---------------~l~~~y~GH~~-~Il~f~ls~-~~~~vvT~s~D~~a- 392 (399)
T KOG0296|consen 331 TKLKWLNTDYLLTACANGKVRQWDARTG---------------QLKFTYTGHQM-GILDFALSP-QKRLVVTVSDDNTA- 392 (399)
T ss_pred EEEEEcCcchheeeccCceEEeeecccc---------------ceEEEEecCch-heeEEEEcC-CCcEEEEecCCCeE-
Confidence 9999999666889999996 7999986 34667889998 999999999 68889999999997
Q ss_pred eecCC
Q 000722 396 SEFDP 400 (1331)
Q Consensus 396 ~VWDl 400 (1331)
+||+.
T Consensus 393 ~VF~v 397 (399)
T KOG0296|consen 393 LVFEV 397 (399)
T ss_pred EEEec
Confidence 78875
No 27
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.94 E-value=3.9e-26 Score=258.14 Aligned_cols=296 Identities=16% Similarity=0.237 Sum_probs=238.0
Q ss_pred cccccCCCcEEEEEeecCCc-eeEeecCCCceeeeccccc--eEEeeeccCCcccchhhhhhhhhhcccccccCCCCccc
Q 000722 5 KAFRPTNDKIVKIQLHPTHP-WLVTADASDHVSVWNWEHR--QVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEA 81 (1331)
Q Consensus 5 ~~L~gHs~~V~~lafSPdg~-~LaSgs~DGtV~VWD~~tg--~~i~s~~~~~~~~i~~vspdg~~Lasgs~d~~g~~l~~ 81 (1331)
+.++ |...|.+++|+|-.. .|++|+.|-+.++|++... .+...+...| ++..+
T Consensus 173 kvl~-~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh------------~~~~~----------- 228 (524)
T KOG0273|consen 173 KVLR-HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRH------------CIREG----------- 228 (524)
T ss_pred eecc-CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhh------------hhhhh-----------
Confidence 4455 999999999999877 9999999999999998631 1100000000 00000
Q ss_pred ccCCceeEEeeecchhhHHHHhhhccccccCCcccccccccccCCCCCCCCceEEEEEeeccee-EeeeecccCCCCCcc
Q 000722 82 MRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQ 160 (1331)
Q Consensus 82 l~gg~V~sVaf~DgtIrvWdl~tg~~l~~~~~~~~~~~~~~V~svafspdg~~lLasgs~d~iI-vwDl~t~~~~~i~~~ 160 (1331)
......+..|++++|+.+|. +|++|+.++.+ +|+... ..+.++
T Consensus 229 --------------------------------~~s~~~nkdVT~L~Wn~~G~-~LatG~~~G~~riw~~~G---~l~~tl 272 (524)
T KOG0273|consen 229 --------------------------------GKSVPSNKDVTSLDWNNDGT-LLATGSEDGEARIWNKDG---NLISTL 272 (524)
T ss_pred --------------------------------cccCCccCCcceEEecCCCC-eEEEeecCcEEEEEecCc---hhhhhh
Confidence 01111145689999999998 99999999988 677654 245678
Q ss_pred ccccccceeeehhhcccCCCcceEeecCCCceeeeeehhhheeehhhcCCCccchhhhhHhhhccccEEEeecCCCceEE
Q 000722 161 ELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLI 240 (1331)
Q Consensus 161 ~~h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIr 240 (1331)
..|.++|.++.| +.+|.+|++++-|+++.+||..++...+.+. -|..+-..+.|. +...|++++.|+.|+
T Consensus 273 ~~HkgPI~slKW-----nk~G~yilS~~vD~ttilwd~~~g~~~q~f~-~~s~~~lDVdW~----~~~~F~ts~td~~i~ 342 (524)
T KOG0273|consen 273 GQHKGPIFSLKW-----NKKGTYILSGGVDGTTILWDAHTGTVKQQFE-FHSAPALDVDWQ----SNDEFATSSTDGCIH 342 (524)
T ss_pred hccCCceEEEEE-----cCCCCEEEeccCCccEEEEeccCceEEEeee-eccCCccceEEe----cCceEeecCCCceEE
Confidence 899999999999 7899999999999999999999998888886 677776667775 566899999999999
Q ss_pred EEeccCCCccccccccceeeeccCcEEEEEechhccCCCcEEEeecCceeEeeeccchhhhcccCCCCcccccccccccC
Q 000722 241 LWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCH 320 (1331)
Q Consensus 241 VWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~sv 320 (1331)
|+.+.... |..++.+|.+.|+++.|+| .+.+|+|+|+|++++||++....+... +..|+..|..+
T Consensus 343 V~kv~~~~------P~~t~~GH~g~V~alk~n~---tg~LLaS~SdD~TlkiWs~~~~~~~~~------l~~Hskei~t~ 407 (524)
T KOG0273|consen 343 VCKVGEDR------PVKTFIGHHGEVNALKWNP---TGSLLASCSDDGTLKIWSMGQSNSVHD------LQAHSKEIYTI 407 (524)
T ss_pred EEEecCCC------cceeeecccCceEEEEECC---CCceEEEecCCCeeEeeecCCCcchhh------hhhhccceeeE
Confidence 99987665 4556899999999999999 899999999999999999887776655 78999999999
Q ss_pred CCCCCCc----------eeeeeecce--eeeeecCccccccccccccccCCCccccccccceEEEEEEeccCCccEeeec
Q 000722 321 PRAPNLD----------ILTCVKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATG 388 (1331)
Q Consensus 321 afspdg~----------lLa~s~Dg~--IWdl~~~~~~~l~~~~~~~~~~~~~~~l~~h~~~~I~~la~sp~~~~lLAtG 388 (1331)
.|+|.|. +++++.|++ +||+..+ .++.+|..|.. +|++++|+| ++.++|+|
T Consensus 408 ~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~g---------------v~i~~f~kH~~-pVysvafS~-~g~ylAsG 470 (524)
T KOG0273|consen 408 KWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESG---------------VPIHTLMKHQE-PVYSVAFSP-NGRYLASG 470 (524)
T ss_pred eecCCCCccCCCcCCceEEEeecCCeEEEEEccCC---------------ceeEeeccCCC-ceEEEEecC-CCcEEEec
Confidence 9998753 457788886 7988864 56778888988 999999999 68889999
Q ss_pred ceeEEEEeecCCCCC
Q 000722 389 TNVGVIISEFDPRSL 403 (1331)
Q Consensus 389 s~DG~Il~VWDlr~~ 403 (1331)
+-||.| .+|+++..
T Consensus 471 s~dg~V-~iws~~~~ 484 (524)
T KOG0273|consen 471 SLDGCV-HIWSTKTG 484 (524)
T ss_pred CCCCee-Eeccccch
Confidence 999998 79998743
No 28
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.94 E-value=5.9e-26 Score=277.38 Aligned_cols=288 Identities=23% Similarity=0.361 Sum_probs=232.9
Q ss_pred ccccC-CCcEEEEEeecCCceeEeecCCCceeeeccccce--EEeeeccCCcccchhhhhhhhhhcccccccCCCCcccc
Q 000722 6 AFRPT-NDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQ--VIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAM 82 (1331)
Q Consensus 6 ~L~gH-s~~V~~lafSPdg~~LaSgs~DGtV~VWD~~tg~--~i~s~~~~~~~~i~~vspdg~~Lasgs~d~~g~~l~~l 82 (1331)
.+.+| ...|+|+.|+++|++|++++.|+.+++|+..+++ .++.+
T Consensus 153 ~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l--------------------------------- 199 (456)
T KOG0266|consen 153 TLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLREL--------------------------------- 199 (456)
T ss_pred eecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccc---------------------------------
Confidence 34444 7899999999999999999999999999986544 22222
Q ss_pred cCCceeEEeeecchhhHHHHhhhccccccCCcccccccccccCCCCCCCCceEEEEEeeccee-EeeeecccCCCCCccc
Q 000722 83 RGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQE 161 (1331)
Q Consensus 83 ~gg~V~sVaf~DgtIrvWdl~tg~~l~~~~~~~~~~~~~~V~svafspdg~~lLasgs~d~iI-vwDl~t~~~~~i~~~~ 161 (1331)
.+| ...|++++|+|+++ ++++++.|+.+ +||+.. ....+.++.
T Consensus 200 ---------------------------------~~h-~~~v~~~~fs~d~~-~l~s~s~D~tiriwd~~~-~~~~~~~l~ 243 (456)
T KOG0266|consen 200 ---------------------------------SGH-TRGVSDVAFSPDGS-YLLSGSDDKTLRIWDLKD-DGRNLKTLK 243 (456)
T ss_pred ---------------------------------ccc-ccceeeeEECCCCc-EEEEecCCceEEEeeccC-CCeEEEEec
Confidence 112 55678899999998 99999999988 889933 234667889
Q ss_pred cccccceeeehhhcccCCCcceEeecCCCceeeeeehhhheeehhhcCCCccchhhhhHhhhccccEEEeecCCCceEEE
Q 000722 162 LDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLIL 241 (1331)
Q Consensus 162 ~h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrV 241 (1331)
+|...|+|++| +|+++++++|+.|++|||||+++++++..+. +|...|++++ |++++++|++++.|+.|++
T Consensus 244 gH~~~v~~~~f-----~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~-~hs~~is~~~---f~~d~~~l~s~s~d~~i~v 314 (456)
T KOG0266|consen 244 GHSTYVTSVAF-----SPDGNLLVSGSDDGTVRIWDVRTGECVRKLK-GHSDGISGLA---FSPDGNLLVSASYDGTIRV 314 (456)
T ss_pred CCCCceEEEEe-----cCCCCEEEEecCCCcEEEEeccCCeEEEeee-ccCCceEEEE---ECCCCCEEEEcCCCccEEE
Confidence 99999999999 6789999999999999999999999999998 9999999998 8999999999999999999
Q ss_pred EeccCCCccccccccceeeeccCc--EEEEEechhccCCCcEEEeecCceeEeeeccchhhhcccCCCCcccccccc---
Q 000722 242 WSADHGQDSRELVPKLSLKAHDGG--VVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVA--- 316 (1331)
Q Consensus 242 WDl~tg~~~~~~~~~~~l~gH~~~--V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~--- 316 (1331)
||+.++... ....+.++... ++++.|+| ++.+|++++.|+.+++||+..+.+... ..+|...
T Consensus 315 wd~~~~~~~----~~~~~~~~~~~~~~~~~~fsp---~~~~ll~~~~d~~~~~w~l~~~~~~~~------~~~~~~~~~~ 381 (456)
T KOG0266|consen 315 WDLETGSKL----CLKLLSGAENSAPVTSVQFSP---NGKYLLSASLDRTLKLWDLRSGKSVGT------YTGHSNLVRC 381 (456)
T ss_pred EECCCCcee----eeecccCCCCCCceeEEEECC---CCcEEEEecCCCeEEEEEccCCcceee------ecccCCccee
Confidence 999998832 11224555554 99999999 899999999999999999999988777 3455543
Q ss_pred cccCCCCCCCcee-eeeecce--eeeeecCccccccccccccccCCCccccccccceEEEEEEeccCCccEeeecc--ee
Q 000722 317 SWCHPRAPNLDIL-TCVKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGT--NV 391 (1331)
Q Consensus 317 V~svafspdg~lL-a~s~Dg~--IWdl~~~~~~~l~~~~~~~~~~~~~~~l~~h~~~~I~~la~sp~~~~lLAtGs--~D 391 (1331)
+.+...++.+.++ +++.|+. +|++.+. ..+..+.+|....+..+.++| ..+++++++ .|
T Consensus 382 ~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~---------------~~~~~l~~h~~~~~~~~~~~~-~~~~~~s~s~~~d 445 (456)
T KOG0266|consen 382 IFSPTLSTGGKLIYSGSEDGSVYVWDSSSG---------------GILQRLEGHSKAAVSDLSSHP-TENLIASSSFEGD 445 (456)
T ss_pred EecccccCCCCeEEEEeCCceEEEEeCCcc---------------chhhhhcCCCCCceeccccCC-CcCeeeecCcCCC
Confidence 3344557778855 7788885 7998853 234456677333889999999 588888888 78
Q ss_pred EEEEeecCCC
Q 000722 392 GVIISEFDPR 401 (1331)
Q Consensus 392 G~Il~VWDlr 401 (1331)
+.+ ++|...
T Consensus 446 ~~~-~~w~~~ 454 (456)
T KOG0266|consen 446 GLI-RLWKYD 454 (456)
T ss_pred ceE-EEecCC
Confidence 888 799754
No 29
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.94 E-value=1.5e-26 Score=276.56 Aligned_cols=208 Identities=21% Similarity=0.384 Sum_probs=184.9
Q ss_pred ccccccCCCcEEEEEeecCCceeEeecCCCceeeeccccceEEeeeccCCcccchhhhhhhhhhcccccccCCCCccccc
Q 000722 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMR 83 (1331)
Q Consensus 4 l~~L~gHs~~V~~lafSPdg~~LaSgs~DGtV~VWD~~tg~~i~s~~~~~~~~i~~vspdg~~Lasgs~d~~g~~l~~l~ 83 (1331)
.++|.||+++|..+.|+|+.++|++++.|++||+|.+.+..++..+++|
T Consensus 444 ~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH------------------------------- 492 (707)
T KOG0263|consen 444 SRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGH------------------------------- 492 (707)
T ss_pred eEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCC-------------------------------
Confidence 4668999999999999999999999999999999999998888777722
Q ss_pred CCceeEEeeecchhhHHHHhhhccccccCCcccccccccccCCCCCCCCceEEEEEeeccee-EeeeecccCCCCCcccc
Q 000722 84 GGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQEL 162 (1331)
Q Consensus 84 gg~V~sVaf~DgtIrvWdl~tg~~l~~~~~~~~~~~~~~V~svafspdg~~lLasgs~d~iI-vwDl~t~~~~~i~~~~~ 162 (1331)
..+|+.+.|+|.|- +|++++.|++- +|..... .....+.+
T Consensus 493 ------------------------------------~~PVwdV~F~P~Gy-YFatas~D~tArLWs~d~~--~PlRifag 533 (707)
T KOG0263|consen 493 ------------------------------------LAPVWDVQFAPRGY-YFATASHDQTARLWSTDHN--KPLRIFAG 533 (707)
T ss_pred ------------------------------------CcceeeEEecCCce-EEEecCCCceeeeeecccC--Cchhhhcc
Confidence 33455667899884 99999999987 7865543 34556899
Q ss_pred ccccceeeehhhcccCCCcceEeecCCCceeeeeehhhheeehhhcCCCccchhhhhHhhhccccEEEeecCCCceEEEE
Q 000722 163 DNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILW 242 (1331)
Q Consensus 163 h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrVW 242 (1331)
|...|.|+.| +|+..|+++||.|.+||+||..+|..++.|. ||.++|.+++ |+|+|.+|++|+.||.|++|
T Consensus 534 hlsDV~cv~F-----HPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~-GH~~~V~al~---~Sp~Gr~LaSg~ed~~I~iW 604 (707)
T KOG0263|consen 534 HLSDVDCVSF-----HPNSNYVATGSSDRTVRLWDVSTGNSVRIFT-GHKGPVTALA---FSPCGRYLASGDEDGLIKIW 604 (707)
T ss_pred cccccceEEE-----CCcccccccCCCCceEEEEEcCCCcEEEEec-CCCCceEEEE---EcCCCceEeecccCCcEEEE
Confidence 9999999999 5689999999999999999999999999998 9999999998 89999999999999999999
Q ss_pred eccCCCccccccccceeeeccCcEEEEEechhccCCCcEEEeecCceeEeeeccchh
Q 000722 243 SADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFK 299 (1331)
Q Consensus 243 Dl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~ 299 (1331)
|+.++..+.. +.+|.+.|.++.|+. ++..|++||.|.+|++||+..-.
T Consensus 605 Dl~~~~~v~~------l~~Ht~ti~SlsFS~---dg~vLasgg~DnsV~lWD~~~~~ 652 (707)
T KOG0263|consen 605 DLANGSLVKQ------LKGHTGTIYSLSFSR---DGNVLASGGADNSVRLWDLTKVI 652 (707)
T ss_pred EcCCCcchhh------hhcccCceeEEEEec---CCCEEEecCCCCeEEEEEchhhc
Confidence 9999986654 789999999999999 99999999999999999987544
No 30
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.93 E-value=2.3e-25 Score=240.48 Aligned_cols=283 Identities=18% Similarity=0.273 Sum_probs=220.9
Q ss_pred cccccCCCcEEEEEeecCCceeEeecCCCceeeecccc-ceEEeeeccCCcccchhhhhhhhhhcccccccCCCCccccc
Q 000722 5 KAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEH-RQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMR 83 (1331)
Q Consensus 5 ~~L~gHs~~V~~lafSPdg~~LaSgs~DGtV~VWD~~t-g~~i~s~~~~~~~~i~~vspdg~~Lasgs~d~~g~~l~~l~ 83 (1331)
..+.||.+.|..+.|+|+|.+|+||+.|..|.+|++.. .+-...++
T Consensus 41 m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lk--------------------------------- 87 (338)
T KOG0265|consen 41 MLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLK--------------------------------- 87 (338)
T ss_pred hhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeec---------------------------------
Confidence 35789999999999999999999999999999999642 11112221
Q ss_pred CCceeEEeeecchhhHHHHhhhccccccCCcccccccccccCCCCCCCCceEEEEEeeccee-EeeeecccCCCCCcccc
Q 000722 84 GGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQEL 162 (1331)
Q Consensus 84 gg~V~sVaf~DgtIrvWdl~tg~~l~~~~~~~~~~~~~~V~svafspdg~~lLasgs~d~iI-vwDl~t~~~~~i~~~~~ 162 (1331)
+| ...|..+.|.+|+. .+++++.|+.+ .||.++++ ++...+.
T Consensus 88 ---------------------------------gH-sgAVM~l~~~~d~s-~i~S~gtDk~v~~wD~~tG~--~~rk~k~ 130 (338)
T KOG0265|consen 88 ---------------------------------GH-SGAVMELHGMRDGS-HILSCGTDKTVRGWDAETGK--RIRKHKG 130 (338)
T ss_pred ---------------------------------cc-cceeEeeeeccCCC-EEEEecCCceEEEEecccce--eeehhcc
Confidence 22 55677788899998 66666666665 89999975 5667899
Q ss_pred ccccceeeehhhcccCCCcceEeecCCCceeeeeehhhheeehhhcCCCccchhhhhHhhhccccEEEeecCCCceEEEE
Q 000722 163 DNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILW 242 (1331)
Q Consensus 163 h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrVW 242 (1331)
|.+.|+.+.- . .....++.+|++||+++|||+++..+++++. ....++++. |...+..+.+|+-|+.|++|
T Consensus 131 h~~~vNs~~p--~--rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~--~kyqltAv~---f~d~s~qv~sggIdn~ikvW 201 (338)
T KOG0265|consen 131 HTSFVNSLDP--S--RRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE--NKYQLTAVG---FKDTSDQVISGGIDNDIKVW 201 (338)
T ss_pred ccceeeecCc--c--ccCCeEEEecCCCceEEEEeecccchhhccc--cceeEEEEE---ecccccceeeccccCceeee
Confidence 9999998883 2 2234678899999999999999999998884 567788887 68889999999999999999
Q ss_pred eccCCCccccccccceeeeccCcEEEEEechhccCCCcEEEeecCceeEeeeccchhhhcccCCCCcccccc----cccc
Q 000722 243 SADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHS----VASW 318 (1331)
Q Consensus 243 Dl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~----~~V~ 318 (1331)
|++.++.. +++.||.+.|+.+..+| ++.++.+-+.|.++++||++-...-++ ++..+.+|. ....
T Consensus 202 d~r~~d~~------~~lsGh~DtIt~lsls~---~gs~llsnsMd~tvrvwd~rp~~p~~R--~v~if~g~~hnfeknlL 270 (338)
T KOG0265|consen 202 DLRKNDGL------YTLSGHADTITGLSLSR---YGSFLLSNSMDNTVRVWDVRPFAPSQR--CVKIFQGHIHNFEKNLL 270 (338)
T ss_pred ccccCcce------EEeecccCceeeEEecc---CCCccccccccceEEEEEecccCCCCc--eEEEeecchhhhhhhcc
Confidence 99988754 45899999999999999 899999999999999999986554333 111233333 2445
Q ss_pred cCCCCCCCcee-eeeecce--eeeeecCccccccccccccccCCCccccccccceEEEEEEeccCCccEeeecceeEEE
Q 000722 319 CHPRAPNLDIL-TCVKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVI 394 (1331)
Q Consensus 319 svafspdg~lL-a~s~Dg~--IWdl~~~~~~~l~~~~~~~~~~~~~~~l~~h~~~~I~~la~sp~~~~lLAtGs~DG~I 394 (1331)
.++|+|++..+ +++.|.. +||.... ..+..+.+|.. .|.+++|||.. -+|.+++.|.+|
T Consensus 271 ~cswsp~~~~i~ags~dr~vyvwd~~~r---------------~~lyklpGh~g-svn~~~Fhp~e-~iils~~sdk~i 332 (338)
T KOG0265|consen 271 KCSWSPNGTKITAGSADRFVYVWDTTSR---------------RILYKLPGHYG-SVNEVDFHPTE-PIILSCSSDKTI 332 (338)
T ss_pred eeeccCCCCccccccccceEEEeecccc---------------cEEEEcCCcce-eEEEeeecCCC-cEEEEeccCcee
Confidence 78899999988 5666765 7887653 23556788988 99999999964 457777777775
No 31
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.93 E-value=5.2e-26 Score=258.39 Aligned_cols=287 Identities=20% Similarity=0.248 Sum_probs=231.4
Q ss_pred ccccccCCCcEEEEEeec-CCceeEeecCCCceeeecccc-ceEEeeeccCCcccchhhhhhhhhhcccccccCCCCccc
Q 000722 4 LKAFRPTNDKIVKIQLHP-THPWLVTADASDHVSVWNWEH-RQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEA 81 (1331)
Q Consensus 4 l~~L~gHs~~V~~lafSP-dg~~LaSgs~DGtV~VWD~~t-g~~i~s~~~~~~~~i~~vspdg~~Lasgs~d~~g~~l~~ 81 (1331)
+++|.||+..|+++.|.| .+.+|++++.|+.|+|||+.. +.|+++|..|
T Consensus 207 ~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH----------------------------- 257 (503)
T KOG0282|consen 207 SHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGH----------------------------- 257 (503)
T ss_pred eeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcc-----------------------------
Confidence 578999999999999999 889999999999999999876 6777777633
Q ss_pred ccCCceeEEeeecchhhHHHHhhhccccccCCcccccccccccCCCCCCCCceEEEEEeeccee-EeeeecccCCCCCcc
Q 000722 82 MRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQ 160 (1331)
Q Consensus 82 l~gg~V~sVaf~DgtIrvWdl~tg~~l~~~~~~~~~~~~~~V~svafspdg~~lLasgs~d~iI-vwDl~t~~~~~i~~~ 160 (1331)
...|.+++|+++|. -|.+++.|+.+ +||.+||+.. .
T Consensus 258 --------------------------------------~k~Vrd~~~s~~g~-~fLS~sfD~~lKlwDtETG~~~----~ 294 (503)
T KOG0282|consen 258 --------------------------------------RKPVRDASFNNCGT-SFLSASFDRFLKLWDTETGQVL----S 294 (503)
T ss_pred --------------------------------------hhhhhhhhccccCC-eeeeeecceeeeeeccccceEE----E
Confidence 44577888999998 66677777766 8999998642 2
Q ss_pred ccc-cccceeeehhhcccCCCc-ceEeecCCCceeeeeehhhheeehhhcCCCccchhhhhHhhhccccEEEeecCCCce
Q 000722 161 ELD-NKSLVCMEFLSRSAVGDV-PLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGL 238 (1331)
Q Consensus 161 ~~h-~~~V~~Vaf~P~s~Spdg-~~LasGs~DGtIrlWDl~t~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~Dgt 238 (1331)
.+| +..++|+.|+| ++ +.+++|+.|+.|+.||+++++.++.+. .|-+.|..+. |-+++..+++.+.|++
T Consensus 295 ~f~~~~~~~cvkf~p-----d~~n~fl~G~sd~ki~~wDiRs~kvvqeYd-~hLg~i~~i~---F~~~g~rFissSDdks 365 (503)
T KOG0282|consen 295 RFHLDKVPTCVKFHP-----DNQNIFLVGGSDKKIRQWDIRSGKVVQEYD-RHLGAILDIT---FVDEGRRFISSSDDKS 365 (503)
T ss_pred EEecCCCceeeecCC-----CCCcEEEEecCCCcEEEEeccchHHHHHHH-hhhhheeeeE---EccCCceEeeeccCcc
Confidence 333 56889999955 55 889999999999999999999999997 8999999997 7899999999999999
Q ss_pred EEEEeccCCCccccccccceeeeccCcEEEEEechhccCCCcEEEeecCceeEeeeccchhhhcccCCCCccccccc--c
Q 000722 239 LILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSV--A 316 (1331)
Q Consensus 239 IrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~--~ 316 (1331)
++||+.+.+-.++. ....+.....++..+| ++.+++.-+.|+.|.+|.+...- ++.....+.+|.. .
T Consensus 366 ~riWe~~~~v~ik~-----i~~~~~hsmP~~~~~P---~~~~~~aQs~dN~i~ifs~~~~~---r~nkkK~feGh~vaGy 434 (503)
T KOG0282|consen 366 VRIWENRIPVPIKN-----IADPEMHTMPCLTLHP---NGKWFAAQSMDNYIAIFSTVPPF---RLNKKKRFEGHSVAGY 434 (503)
T ss_pred EEEEEcCCCccchh-----hcchhhccCcceecCC---CCCeehhhccCceEEEEeccccc---ccCHhhhhcceeccCc
Confidence 99999988765432 1222333466889999 89999999999999999865322 2222234677764 4
Q ss_pred cccCCCCCCCcee-eeeecce--eeeeecCccccccccccccccCCCccccccccceEEEEEEeccCCccEeeecceeEE
Q 000722 317 SWCHPRAPNLDIL-TCVKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGV 393 (1331)
Q Consensus 317 V~svafspdg~lL-a~s~Dg~--IWdl~~~~~~~l~~~~~~~~~~~~~~~l~~h~~~~I~~la~sp~~~~lLAtGs~DG~ 393 (1331)
-+.+.|||||.+| +|..||+ +||.++- +.+..+..|.. .+..+.|||.....+||++.||.
T Consensus 435 s~~v~fSpDG~~l~SGdsdG~v~~wdwkt~---------------kl~~~lkah~~-~ci~v~wHP~e~Skvat~~w~G~ 498 (503)
T KOG0282|consen 435 SCQVDFSPDGRTLCSGDSDGKVNFWDWKTT---------------KLVSKLKAHDQ-PCIGVDWHPVEPSKVATCGWDGL 498 (503)
T ss_pred eeeEEEcCCCCeEEeecCCccEEEeechhh---------------hhhhccccCCc-ceEEEEecCCCcceeEecccCce
Confidence 5578899999977 6778887 6888863 23456777877 89999999998889999999999
Q ss_pred EEeecC
Q 000722 394 IISEFD 399 (1331)
Q Consensus 394 Il~VWD 399 (1331)
| ++||
T Consensus 499 I-kiwd 503 (503)
T KOG0282|consen 499 I-KIWD 503 (503)
T ss_pred e-EecC
Confidence 8 8996
No 32
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.93 E-value=1e-25 Score=254.85 Aligned_cols=279 Identities=20% Similarity=0.287 Sum_probs=224.6
Q ss_pred CCcEEEEEeecCCceeEeecCCCceeeeccccceEEeeeccCCcccchhhhhhhhhhcccccccCCCCcccccCCceeEE
Q 000722 11 NDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRGGSVKQV 90 (1331)
Q Consensus 11 s~~V~~lafSPdg~~LaSgs~DGtV~VWD~~tg~~i~s~~~~~~~~i~~vspdg~~Lasgs~d~~g~~l~~l~gg~V~sV 90 (1331)
+..|++++|+.+|..||+|..||.++||+.. |.++.++..|
T Consensus 235 nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~-G~l~~tl~~H-------------------------------------- 275 (524)
T KOG0273|consen 235 NKDVTSLDWNNDGTLLATGSEDGEARIWNKD-GNLISTLGQH-------------------------------------- 275 (524)
T ss_pred cCCcceEEecCCCCeEEEeecCcEEEEEecC-chhhhhhhcc--------------------------------------
Confidence 3679999999999999999999999999953 4444444422
Q ss_pred eeecchhhHHHHhhhccccccCCcccccccccccCCCCCCCCceEEEEEeecc-eeEeeeecccCCCCCcccccccccee
Q 000722 91 NFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNK-AIFLDLVTMRGRDIPKQELDNKSLVC 169 (1331)
Q Consensus 91 af~DgtIrvWdl~tg~~l~~~~~~~~~~~~~~V~svafspdg~~lLasgs~d~-iIvwDl~t~~~~~i~~~~~h~~~V~~ 169 (1331)
..+|.++.|+.+|. +|++++-|+ +++||..++.. ...+..|..+-..
T Consensus 276 -----------------------------kgPI~slKWnk~G~-yilS~~vD~ttilwd~~~g~~--~q~f~~~s~~~lD 323 (524)
T KOG0273|consen 276 -----------------------------KGPIFSLKWNKKGT-YILSGGVDGTTILWDAHTGTV--KQQFEFHSAPALD 323 (524)
T ss_pred -----------------------------CCceEEEEEcCCCC-EEEeccCCccEEEEeccCceE--EEeeeeccCCccc
Confidence 44455666788898 666666665 55899987654 3346777777678
Q ss_pred eehhhcccCCCcceEeecCCCceeeeeehhhheeehhhcCCCccchhhhhHhhhccccEEEeecCCCceEEEEeccCCCc
Q 000722 170 MEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQD 249 (1331)
Q Consensus 170 Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrVWDl~tg~~ 249 (1331)
|.|. +...+++++.||.|+|+.+...+++.++. ||.+.|.++. +.|.+.+|+|+|.|++++||++....+
T Consensus 324 VdW~------~~~~F~ts~td~~i~V~kv~~~~P~~t~~-GH~g~V~alk---~n~tg~LLaS~SdD~TlkiWs~~~~~~ 393 (524)
T KOG0273|consen 324 VDWQ------SNDEFATSSTDGCIHVCKVGEDRPVKTFI-GHHGEVNALK---WNPTGSLLASCSDDGTLKIWSMGQSNS 393 (524)
T ss_pred eEEe------cCceEeecCCCceEEEEEecCCCcceeee-cccCceEEEE---ECCCCceEEEecCCCeeEeeecCCCcc
Confidence 8993 56679999999999999999999999998 8999999999 689999999999999999999988776
Q ss_pred cccccccceeeeccCcEEEEEechh------ccCCCcEEEeecCceeEeeeccchhhhcccCCCCcccccccccccCCCC
Q 000722 250 SRELVPKLSLKAHDGGVVAVELSRV------MGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRA 323 (1331)
Q Consensus 250 ~~~~~~~~~l~gH~~~V~svafsp~------~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafs 323 (1331)
... +.+|+..|..+.|+|. +..+..|++++.|++|++||+..+.++.+ +..|..+|++++|+
T Consensus 394 ~~~------l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~------f~kH~~pVysvafS 461 (524)
T KOG0273|consen 394 VHD------LQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHT------LMKHQEPVYSVAFS 461 (524)
T ss_pred hhh------hhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEe------eccCCCceEEEEec
Confidence 554 7899999999999984 12456899999999999999999998877 78999999999999
Q ss_pred CCCcee-eeeecce--eeeeecCccccccccccccccCCCccccccccceEEEEEEeccCCccEeeecceeEEEEeecCC
Q 000722 324 PNLDIL-TCVKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDP 400 (1331)
Q Consensus 324 pdg~lL-a~s~Dg~--IWdl~~~~~~~l~~~~~~~~~~~~~~~l~~h~~~~I~~la~sp~~~~lLAtGs~DG~Il~VWDl 400 (1331)
|+|+++ +|+.|+. +|+++++.. ...+.+. + .|..+.|+.. +..|..+-.||.+ ++-|+
T Consensus 462 ~~g~ylAsGs~dg~V~iws~~~~~l---------------~~s~~~~-~-~Ifel~Wn~~-G~kl~~~~sd~~v-cvldl 522 (524)
T KOG0273|consen 462 PNGRYLASGSLDGCVHIWSTKTGKL---------------VKSYQGT-G-GIFELCWNAA-GDKLGACASDGSV-CVLDL 522 (524)
T ss_pred CCCcEEEecCCCCeeEeccccchhe---------------eEeecCC-C-eEEEEEEcCC-CCEEEEEecCCCc-eEEEe
Confidence 999988 5677885 799887532 2233333 3 5999999995 6777777778877 67776
Q ss_pred C
Q 000722 401 R 401 (1331)
Q Consensus 401 r 401 (1331)
|
T Consensus 523 r 523 (524)
T KOG0273|consen 523 R 523 (524)
T ss_pred c
Confidence 5
No 33
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.93 E-value=4.1e-26 Score=269.51 Aligned_cols=288 Identities=21% Similarity=0.354 Sum_probs=239.3
Q ss_pred ccccccCCCcEEEEEee-cCCceeEeecCCCceeeeccccceEEeeeccCCcccchhhh--hhhhhhcccccccCCCCcc
Q 000722 4 LKAFRPTNDKIVKIQLH-PTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVG--AKLEKLAEGELEHKGKPTE 80 (1331)
Q Consensus 4 l~~L~gHs~~V~~lafS-Pdg~~LaSgs~DGtV~VWD~~tg~~i~s~~~~~~~~i~~vs--pdg~~Lasgs~d~~g~~l~ 80 (1331)
.+.+-|.++.|..+.|- |+.++|+.++..+.+|+++..+..|. +-.+|.+.+..+. .+|-.|++++
T Consensus 316 ~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~--ii~GH~e~vlSL~~~~~g~llat~s--------- 384 (775)
T KOG0319|consen 316 VKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ--IIPGHTEAVLSLDVWSSGDLLATGS--------- 384 (775)
T ss_pred ehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE--EEeCchhheeeeeecccCcEEEEec---------
Confidence 35677889999999985 56789999999999999998876665 4446666665554 4444555554
Q ss_pred cccCCceeEEeeecchhhHHHHhhhccccccCCcccccccccccCCCCCCCCceEEEEEeeccee-EeeeecccC-----
Q 000722 81 AMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRG----- 154 (1331)
Q Consensus 81 ~l~gg~V~sVaf~DgtIrvWdl~tg~~l~~~~~~~~~~~~~~V~svafspdg~~lLasgs~d~iI-vwDl~t~~~----- 154 (1331)
.|.++++|.++.+.+.........+| ...|.+++++..+..+|++++.|+++ +|++...+.
T Consensus 385 ------------KD~svilWr~~~~~~~~~~~a~~~gH-~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~ 451 (775)
T KOG0319|consen 385 ------------KDKSVILWRLNNNCSKSLCVAQANGH-TNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPI 451 (775)
T ss_pred ------------CCceEEEEEecCCcchhhhhhhhccc-ccccceeeecccCccEEEEecCCceEEEecCCCcccccccc
Confidence 68999999885544333333444555 78899999998888899999999999 897764111
Q ss_pred --CCCCccccccccceeeehhhcccCCCcceEeecCCCceeeeeehhhheeehhhcCCCccchhhhhHhhhccccEEEee
Q 000722 155 --RDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVS 232 (1331)
Q Consensus 155 --~~i~~~~~h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~~~v~~~~~gH~~~V~~vawf~~spdg~lLaS 232 (1331)
.+......|.+.|+||++ +|+..+|+|||.|.+.+||+++..+....+. ||+..|.|+. |++...+++|
T Consensus 452 ~~~~~~t~~aHdKdIN~Vai-----a~ndkLiAT~SqDktaKiW~le~~~l~~vLs-GH~RGvw~V~---Fs~~dq~laT 522 (775)
T KOG0319|consen 452 VLTCRYTERAHDKDINCVAI-----APNDKLIATGSQDKTAKIWDLEQLRLLGVLS-GHTRGVWCVS---FSKNDQLLAT 522 (775)
T ss_pred eehhhHHHHhhcccccceEe-----cCCCceEEecccccceeeecccCceEEEEee-CCccceEEEE---eccccceeEe
Confidence 111234678999999999 7899999999999999999999888888887 9999999998 8999999999
Q ss_pred cCCCceEEEEeccCCCccccccccceeeeccCcEEEEEechhccCCCcEEEeecCceeEeeeccchhhhcccCCCCcccc
Q 000722 233 GGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLAC 312 (1331)
Q Consensus 233 gs~DgtIrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~ 312 (1331)
+|.|++|+||.+.+..|+++ +.||+..|..+.|-. ++..|+|++.||.|++|++.++.|+.+ +..
T Consensus 523 ~SgD~TvKIW~is~fSClkT------~eGH~~aVlra~F~~---~~~qliS~~adGliKlWnikt~eC~~t------lD~ 587 (775)
T KOG0319|consen 523 CSGDKTVKIWSISTFSCLKT------FEGHTSAVLRASFIR---NGKQLISAGADGLIKLWNIKTNECEMT------LDA 587 (775)
T ss_pred ccCCceEEEEEeccceeeee------ecCccceeEeeeeee---CCcEEEeccCCCcEEEEeccchhhhhh------hhh
Confidence 99999999999999988765 799999999999998 899999999999999999999999988 799
Q ss_pred cccccccCCCCCCCce-eeeeecce--eee
Q 000722 313 HSVASWCHPRAPNLDI-LTCVKDSH--IWA 339 (1331)
Q Consensus 313 H~~~V~svafspdg~l-La~s~Dg~--IWd 339 (1331)
|.+.||++..++.... ++++.|++ +|.
T Consensus 588 H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wk 617 (775)
T KOG0319|consen 588 HNDRVWALSVSPLLDMFVTGGGDGRIIFWK 617 (775)
T ss_pred ccceeEEEeecCccceeEecCCCeEEEEee
Confidence 9999999999999884 57899998 574
No 34
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.93 E-value=7.4e-25 Score=285.90 Aligned_cols=312 Identities=14% Similarity=0.167 Sum_probs=223.1
Q ss_pred cccccCCCcEEEEEeecCCceeEeecCCCceeeeccccceEEeeeccCCcccchhhhhhhhhhcccccccCCCCcccccC
Q 000722 5 KAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRG 84 (1331)
Q Consensus 5 ~~L~gHs~~V~~lafSPdg~~LaSgs~DGtV~VWD~~tg~~i~s~~~~~~~~i~~vspdg~~Lasgs~d~~g~~l~~l~g 84 (1331)
..+.+|.+.|++++|+|+|++|++|+.|+.|+|||..+... .-...+
T Consensus 477 ~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~--~~~~~~------------------------------- 523 (793)
T PLN00181 477 GDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIK--DGRDIH------------------------------- 523 (793)
T ss_pred ccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccc--cccccc-------------------------------
Confidence 34567999999999999999999999999999999753100 000000
Q ss_pred CceeEEeeecchhhHHHHhhhccccccCCcccccccccccCCCCCCCCceEEEEEeeccee-EeeeecccCCCCCccccc
Q 000722 85 GSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQELD 163 (1331)
Q Consensus 85 g~V~sVaf~DgtIrvWdl~tg~~l~~~~~~~~~~~~~~V~svafspdg~~lLasgs~d~iI-vwDl~t~~~~~i~~~~~h 163 (1331)
.++. ... ....+.+++|++....+|++++.|+.+ +||+.+++ .+..+..|
T Consensus 524 ~~~~-------------------------~~~--~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~--~~~~~~~H 574 (793)
T PLN00181 524 YPVV-------------------------ELA--SRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQ--LVTEMKEH 574 (793)
T ss_pred cceE-------------------------Eec--ccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCe--EEEEecCC
Confidence 0000 000 023456677877544488899888877 89988754 34567789
Q ss_pred cccceeeehhhcccCCCcceEeecCCCceeeeeehhhheeehhhcCCCccchhhhhHhhhccccEEEeecCCCceEEEEe
Q 000722 164 NKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWS 243 (1331)
Q Consensus 164 ~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrVWD 243 (1331)
.+.|++++|+| +++.+|++|+.||+|++||+.++.++..+. . ...|.++.| .++++.+|++|+.||.|++||
T Consensus 575 ~~~V~~l~~~p----~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~-~-~~~v~~v~~--~~~~g~~latgs~dg~I~iwD 646 (793)
T PLN00181 575 EKRVWSIDYSS----ADPTLLASGSDDGSVKLWSINQGVSIGTIK-T-KANICCVQF--PSESGRSLAFGSADHKVYYYD 646 (793)
T ss_pred CCCEEEEEEcC----CCCCEEEEEcCCCEEEEEECCCCcEEEEEe-c-CCCeEEEEE--eCCCCCEEEEEeCCCeEEEEE
Confidence 99999999943 378899999999999999999988887775 3 367888873 367899999999999999999
Q ss_pred ccCCCccccccccceeeeccCcEEEEEechhccCCCcEEEeecCceeEeeeccchhhhcccCCCCcccccccccccCCCC
Q 000722 244 ADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRA 323 (1331)
Q Consensus 244 l~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafs 323 (1331)
+++++. +...+.+|...|.++.|. ++.+|++++.|++|++||+..+.......++..+.+|...+.++.|+
T Consensus 647 ~~~~~~-----~~~~~~~h~~~V~~v~f~----~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s 717 (793)
T PLN00181 647 LRNPKL-----PLCTMIGHSKTVSYVRFV----DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLS 717 (793)
T ss_pred CCCCCc-----cceEecCCCCCEEEEEEe----CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEc
Confidence 987642 233467899999999996 46789999999999999997542111112334478899999999999
Q ss_pred CCCcee-eeeecce--eeeeecCccccccccccccccCCCccccccccceEEEEEEeccCCccEeeecceeEEEEeecCC
Q 000722 324 PNLDIL-TCVKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDP 400 (1331)
Q Consensus 324 pdg~lL-a~s~Dg~--IWdl~~~~~~~l~~~~~~~~~~~~~~~l~~h~~~~I~~la~sp~~~~lLAtGs~DG~Il~VWDl 400 (1331)
+++.+| +++.|++ ||+...... ......... ....-.....+.. .|.+++|+| ++..|++|+.||.| ++|++
T Consensus 718 ~~~~~lasgs~D~~v~iw~~~~~~~-~~s~~~~~~-~~~~~~~~~~~~~-~V~~v~ws~-~~~~lva~~~dG~I-~i~~~ 792 (793)
T PLN00181 718 VSDGYIATGSETNEVFVYHKAFPMP-VLSYKFKTI-DPVSGLEVDDASQ-FISSVCWRG-QSSTLVAANSTGNI-KILEM 792 (793)
T ss_pred CCCCEEEEEeCCCEEEEEECCCCCc-eEEEecccC-CcccccccCCCCc-EEEEEEEcC-CCCeEEEecCCCcE-EEEec
Confidence 998866 6677886 788654311 000000000 0000011233444 799999999 57779999999998 89985
No 35
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.92 E-value=1.1e-24 Score=234.48 Aligned_cols=244 Identities=19% Similarity=0.267 Sum_probs=199.9
Q ss_pred CcccccccccccCCCCCCCCceEEEEEeecc-eeEeeeecccCCCCCccccccccceeeehhhcccCCCcceEeecCCCc
Q 000722 113 PTAVSNVTSGFASPPPSTKGRHFLVICCVNK-AIFLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDG 191 (1331)
Q Consensus 113 ~~~~~~~~~~V~svafspdg~~lLasgs~d~-iIvwDl~t~~~~~i~~~~~h~~~V~~Vaf~P~s~Spdg~~LasGs~DG 191 (1331)
..+.+| ...|.++.|++|.+ .+++++.|+ +++||..|.. .+........+|..++| +|.|+++++|+.|.
T Consensus 49 r~LkGH-~~Ki~~~~ws~Dsr-~ivSaSqDGklIvWDs~Ttn--K~haipl~s~WVMtCA~-----sPSg~~VAcGGLdN 119 (343)
T KOG0286|consen 49 RTLKGH-LNKIYAMDWSTDSR-RIVSASQDGKLIVWDSFTTN--KVHAIPLPSSWVMTCAY-----SPSGNFVACGGLDN 119 (343)
T ss_pred EEeccc-ccceeeeEecCCcC-eEEeeccCCeEEEEEccccc--ceeEEecCceeEEEEEE-----CCCCCeEEecCcCc
Confidence 345566 78899999999998 777777766 5599887744 23345666889999999 78999999999999
Q ss_pred eeeeeehhhh------eeehhhcCCCccchhhhhHhhhccccEEEeecCCCceEEEEeccCCCccccccccceeeeccCc
Q 000722 192 VIRVLSMISW------KLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGG 265 (1331)
Q Consensus 192 tIrlWDl~t~------~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrVWDl~tg~~~~~~~~~~~l~gH~~~ 265 (1331)
...||++.+. +..+.+. +|++++.|+. |.+ ...|+|+|.|.++.+||+++++.+.. +.||.+.
T Consensus 120 ~Csiy~ls~~d~~g~~~v~r~l~-gHtgylScC~---f~d-D~~ilT~SGD~TCalWDie~g~~~~~------f~GH~gD 188 (343)
T KOG0286|consen 120 KCSIYPLSTRDAEGNVRVSRELA-GHTGYLSCCR---FLD-DNHILTGSGDMTCALWDIETGQQTQV------FHGHTGD 188 (343)
T ss_pred eeEEEecccccccccceeeeeec-CccceeEEEE---EcC-CCceEecCCCceEEEEEcccceEEEE------ecCCccc
Confidence 9999999854 2334454 9999999998 454 56889999999999999999986654 7899999
Q ss_pred EEEEEechhccCCCcEEEeecCceeEeeeccchhhhcccCCCCcccccccccccCCCCCCCc-eeeeeecce--eeeeec
Q 000722 266 VVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLD-ILTCVKDSH--IWAIEH 342 (1331)
Q Consensus 266 V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg~-lLa~s~Dg~--IWdl~~ 342 (1331)
|.++.++| .+++.+++|+-|+..++||++.+.+.++ +.+|...|.++.|+|+|. +.+|++|++ +||++.
T Consensus 189 V~slsl~p--~~~ntFvSg~cD~~aklWD~R~~~c~qt------F~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRa 260 (343)
T KOG0286|consen 189 VMSLSLSP--SDGNTFVSGGCDKSAKLWDVRSGQCVQT------FEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRA 260 (343)
T ss_pred EEEEecCC--CCCCeEEecccccceeeeeccCcceeEe------ecccccccceEEEccCCCeeeecCCCceeEEEeecC
Confidence 99999999 4899999999999999999999999888 799999999999999998 557788874 899986
Q ss_pred CccccccccccccccCCCcccccccc-ceEEEEEEeccCCccEeeecceeEEEEeecCCC
Q 000722 343 PTYSALTRPLCELSSLVPPQVLAHHK-KLRVYCMVAHSLQPHLVATGTNVGVIISEFDPR 401 (1331)
Q Consensus 343 ~~~~~l~~~~~~~~~~~~~~~l~~h~-~~~I~~la~sp~~~~lLAtGs~DG~Il~VWDlr 401 (1331)
... +..+.... ...|++++||. .+++|.+|.+|..+ .+||.-
T Consensus 261 D~~---------------~a~ys~~~~~~gitSv~FS~-SGRlLfagy~d~~c-~vWDtl 303 (343)
T KOG0286|consen 261 DQE---------------LAVYSHDSIICGITSVAFSK-SGRLLFAGYDDFTC-NVWDTL 303 (343)
T ss_pred CcE---------------EeeeccCcccCCceeEEEcc-cccEEEeeecCCce-eEeecc
Confidence 421 22222211 22799999999 68999999999998 799964
No 36
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=1.5e-25 Score=247.03 Aligned_cols=245 Identities=20% Similarity=0.304 Sum_probs=209.2
Q ss_pred ccccccCCCcEEEEEeecCCceeEeecCCCceeeeccccc-eEEeeeccCCcccchhhhhhhhhhcccccccCCCCcccc
Q 000722 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHR-QVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAM 82 (1331)
Q Consensus 4 l~~L~gHs~~V~~lafSPdg~~LaSgs~DGtV~VWD~~tg-~~i~s~~~~~~~~i~~vspdg~~Lasgs~d~~g~~l~~l 82 (1331)
.+.|+||++.|..|+|+..|++|++++.|-.+++||..+. ++++...
T Consensus 143 e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~-------------------------------- 190 (406)
T KOG0295|consen 143 ERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLI-------------------------------- 190 (406)
T ss_pred hhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhc--------------------------------
Confidence 4679999999999999999999999999999999998752 2222222
Q ss_pred cCCceeEEeeecchhhHHHHhhhccccccCCcccccccccccCCCCCCCCceEEEEEeeccee-EeeeecccCCCCCccc
Q 000722 83 RGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQE 161 (1331)
Q Consensus 83 ~gg~V~sVaf~DgtIrvWdl~tg~~l~~~~~~~~~~~~~~V~svafspdg~~lLasgs~d~iI-vwDl~t~~~~~i~~~~ 161 (1331)
+| ...|.++.|-|.|. .+++++.|..+ .|+..++- ++.++.
T Consensus 191 ----------------------------------gh-~h~vS~V~f~P~gd-~ilS~srD~tik~We~~tg~--cv~t~~ 232 (406)
T KOG0295|consen 191 ----------------------------------GH-EHGVSSVFFLPLGD-HILSCSRDNTIKAWECDTGY--CVKTFP 232 (406)
T ss_pred ----------------------------------Cc-ccceeeEEEEecCC-eeeecccccceeEEecccce--eEEecc
Confidence 11 34466777888887 88899988888 89999854 677899
Q ss_pred cccccceeeehhhcccCCCcceEeecCCCceeeeeehhhheeehhhcCCCccchhhhhHhhhc------------cccEE
Q 000722 162 LDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMAS------------SGEAL 229 (1331)
Q Consensus 162 ~h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~~~v~~~~~gH~~~V~~vawf~~s------------pdg~l 229 (1331)
+|..+|+-+.. +.||.++++|+.|.+|++|-+.+++|...+. +|+..|.|++|..+. ..+..
T Consensus 233 ~h~ewvr~v~v-----~~DGti~As~s~dqtl~vW~~~t~~~k~~lR-~hEh~vEci~wap~~~~~~i~~at~~~~~~~~ 306 (406)
T KOG0295|consen 233 GHSEWVRMVRV-----NQDGTIIASCSNDQTLRVWVVATKQCKAELR-EHEHPVECIAWAPESSYPSISEATGSTNGGQV 306 (406)
T ss_pred CchHhEEEEEe-----cCCeeEEEecCCCceEEEEEeccchhhhhhh-ccccceEEEEecccccCcchhhccCCCCCccE
Confidence 99999999999 7899999999999999999999999988888 999999999985211 12368
Q ss_pred EeecCCCceEEEEeccCCCccccccccceeeeccCcEEEEEechhccCCCcEEEeecCceeEeeeccchhhhcccCCCCc
Q 000722 230 LVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPK 309 (1331)
Q Consensus 230 LaSgs~DgtIrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~ 309 (1331)
+.+++.|++|++||+.++.++ +++.+|..+|..++|+| .|+||+++.+|+++++||+++++|+.+
T Consensus 307 l~s~SrDktIk~wdv~tg~cL------~tL~ghdnwVr~~af~p---~Gkyi~ScaDDktlrvwdl~~~~cmk~------ 371 (406)
T KOG0295|consen 307 LGSGSRDKTIKIWDVSTGMCL------FTLVGHDNWVRGVAFSP---GGKYILSCADDKTLRVWDLKNLQCMKT------ 371 (406)
T ss_pred EEeecccceEEEEeccCCeEE------EEEecccceeeeeEEcC---CCeEEEEEecCCcEEEEEeccceeeec------
Confidence 999999999999999999865 45899999999999999 899999999999999999999999887
Q ss_pred ccccccccccCCCCCCCcee-eeeecce--eee
Q 000722 310 LACHSVASWCHPRAPNLDIL-TCVKDSH--IWA 339 (1331)
Q Consensus 310 l~~H~~~V~svafspdg~lL-a~s~Dg~--IWd 339 (1331)
+..|...|+++.|+.+..++ +|+-|.+ +|.
T Consensus 372 ~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 372 LEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred cCCCcceeEEEecCCCCceEEeccccceeeeee
Confidence 56888899999999887765 6777764 775
No 37
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.92 E-value=1.7e-25 Score=241.38 Aligned_cols=294 Identities=16% Similarity=0.220 Sum_probs=237.3
Q ss_pred cCCCcEEEEEeecCCceeEeecCCCceeeeccccceEEeeeccCCcccchhhhhhhhhhcccccccCCCCcccccCCcee
Q 000722 9 PTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRGGSVK 88 (1331)
Q Consensus 9 gHs~~V~~lafSPdg~~LaSgs~DGtV~VWD~~tg~~i~s~~~~~~~~i~~vspdg~~Lasgs~d~~g~~l~~l~gg~V~ 88 (1331)
|...-+.|..|||||+||++|+.||.|.|||+.+|+..+.++-..
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQA----------------------------------- 255 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQA----------------------------------- 255 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhh-----------------------------------
Confidence 566779999999999999999999999999999988777665211
Q ss_pred EEeeecchhhHHHHhhhccccccCCcccccccccccCCCCCCCCceEEEEEeeccee-EeeeecccCCCCCcc-cccccc
Q 000722 89 QVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQ-ELDNKS 166 (1331)
Q Consensus 89 sVaf~DgtIrvWdl~tg~~l~~~~~~~~~~~~~~V~svafspdg~~lLasgs~d~iI-vwDl~t~~~~~i~~~-~~h~~~ 166 (1331)
.....-++..|.|++|+.|.. ++++|+.|+.+ +|.+.++. ++..+ ..|...
T Consensus 256 ------------------------qd~fMMmd~aVlci~FSRDsE-MlAsGsqDGkIKvWri~tG~--ClRrFdrAHtkG 308 (508)
T KOG0275|consen 256 ------------------------QDNFMMMDDAVLCISFSRDSE-MLASGSQDGKIKVWRIETGQ--CLRRFDRAHTKG 308 (508)
T ss_pred ------------------------hcceeecccceEEEeecccHH-HhhccCcCCcEEEEEEecch--HHHHhhhhhccC
Confidence 001111256788899999987 99999999888 99999976 44455 489999
Q ss_pred ceeeehhhcccCCCcceEeecCCCceeeeeehhhheeehhhcCCCccchhhhhHhhhccccEEEeecCCCceEEEEeccC
Q 000722 167 LVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADH 246 (1331)
Q Consensus 167 V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrVWDl~t 246 (1331)
|+|+.| +.|+..+++++.|.++|+.-+.+|++++.|. ||.++|+... |.++|..+++++.||+|++|+..+
T Consensus 309 vt~l~F-----SrD~SqiLS~sfD~tvRiHGlKSGK~LKEfr-GHsSyvn~a~---ft~dG~~iisaSsDgtvkvW~~Kt 379 (508)
T KOG0275|consen 309 VTCLSF-----SRDNSQILSASFDQTVRIHGLKSGKCLKEFR-GHSSYVNEAT---FTDDGHHIISASSDGTVKVWHGKT 379 (508)
T ss_pred eeEEEE-----ccCcchhhcccccceEEEeccccchhHHHhc-CccccccceE---EcCCCCeEEEecCCccEEEecCcc
Confidence 999999 8899999999999999999999999999998 9999999997 899999999999999999999999
Q ss_pred CCccccccccceeeeccCcEEEEEechhccCCCcEEEeecCceeEeeeccchhhhcccCCCCcccccccccccCCCCCCC
Q 000722 247 GQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNL 326 (1331)
Q Consensus 247 g~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg 326 (1331)
.+|+.++.+ .+.+..|+++-.-| .+...+++|...++|.|-++. |+.++++... ....+...+.+.+|.|
T Consensus 380 teC~~Tfk~----~~~d~~vnsv~~~P--Knpeh~iVCNrsntv~imn~q-GQvVrsfsSG---kREgGdFi~~~lSpkG 449 (508)
T KOG0275|consen 380 TECLSTFKP----LGTDYPVNSVILLP--KNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSG---KREGGDFINAILSPKG 449 (508)
T ss_pred hhhhhhccC----CCCcccceeEEEcC--CCCceEEEEcCCCeEEEEecc-ceEEeeeccC---CccCCceEEEEecCCC
Confidence 999887644 34667899999888 477899999999999999986 5556664322 1222334467789999
Q ss_pred cee-eeeecceeeeeecCccccccccccccccCCCccccccccceEEEEEEeccCCccEeeecceeEEEEeecC
Q 000722 327 DIL-TCVKDSHIWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFD 399 (1331)
Q Consensus 327 ~lL-a~s~Dg~IWdl~~~~~~~l~~~~~~~~~~~~~~~l~~h~~~~I~~la~sp~~~~lLAtGs~DG~Il~VWD 399 (1331)
.++ +.++|+.+|-+.... .....++..|.+ .+..++.|| ..+++|+-+.||.+ ++|.
T Consensus 450 ewiYcigED~vlYCF~~~s-------------G~LE~tl~VhEk-dvIGl~HHP-HqNllAsYsEDgll-KLWk 507 (508)
T KOG0275|consen 450 EWIYCIGEDGVLYCFSVLS-------------GKLERTLPVHEK-DVIGLTHHP-HQNLLASYSEDGLL-KLWK 507 (508)
T ss_pred cEEEEEccCcEEEEEEeec-------------Cceeeeeecccc-cccccccCc-ccchhhhhcccchh-hhcC
Confidence 977 678999876554211 122335556777 788999999 58899999999997 8996
No 38
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=8.4e-25 Score=243.36 Aligned_cols=291 Identities=16% Similarity=0.173 Sum_probs=223.6
Q ss_pred ccccccCCCcEEEEEeecCCceeEeecCCCceeeeccccceEEeeeccCCcccchhhhhhhhhhcccccccCCCCccccc
Q 000722 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMR 83 (1331)
Q Consensus 4 l~~L~gHs~~V~~lafSPdg~~LaSgs~DGtV~VWD~~tg~~i~s~~~~~~~~i~~vspdg~~Lasgs~d~~g~~l~~l~ 83 (1331)
.+.|..|++.|+-+.||++|++|||++.|.+..||++.....+.-.
T Consensus 217 ~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~---------------------------------- 262 (519)
T KOG0293|consen 217 WQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLK---------------------------------- 262 (519)
T ss_pred hhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeee----------------------------------
Confidence 4678999999999999999999999999999999997542221100
Q ss_pred CCceeEEeeecchhhHHHHhhhccccccCCcccccccccccCCCCCCCCceEEEEEeecceeEeeeecccCCCCCccccc
Q 000722 84 GGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFLDLVTMRGRDIPKQELD 163 (1331)
Q Consensus 84 gg~V~sVaf~DgtIrvWdl~tg~~l~~~~~~~~~~~~~~V~svafspdg~~lLasgs~d~iIvwDl~t~~~~~i~~~~~h 163 (1331)
.+..+| ...|..+.||||.+.++++|.++.+.+||..++..... ...++
T Consensus 263 -----------------------------~tlvgh-~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~-y~~~~ 311 (519)
T KOG0293|consen 263 -----------------------------KTLVGH-SQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHL-YPSGL 311 (519)
T ss_pred -----------------------------eeeecc-cCceEEEEECCCCCeEEecCchHheeeccCCcchhhhh-cccCc
Confidence 122233 44566688999998555555555666999999876443 22336
Q ss_pred cccceeeehhhcccCCCcceEeecCCCceeeeeehhhheeehhhcCCCccchhhhhHhhhccccEEEeecCCCceEEEEe
Q 000722 164 NKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWS 243 (1331)
Q Consensus 164 ~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrVWD 243 (1331)
...+.|++| .|||..+++|+.|++|..||+.. ........-....|.+++ ..+||..+++.+.|..|++++
T Consensus 312 ~~S~~sc~W-----~pDg~~~V~Gs~dr~i~~wdlDg-n~~~~W~gvr~~~v~dla---it~Dgk~vl~v~~d~~i~l~~ 382 (519)
T KOG0293|consen 312 GFSVSSCAW-----CPDGFRFVTGSPDRTIIMWDLDG-NILGNWEGVRDPKVHDLA---ITYDGKYVLLVTVDKKIRLYN 382 (519)
T ss_pred CCCcceeEE-----ccCCceeEecCCCCcEEEecCCc-chhhcccccccceeEEEE---EcCCCcEEEEEecccceeeec
Confidence 788999999 67999999999999999999873 344444322335677887 789999999999999999999
Q ss_pred ccCCCccccccccceeeeccCcEEEEEechhccCCCcEEEeecCceeEeeeccchhhhcccCCCCcccccccc--cccCC
Q 000722 244 ADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVA--SWCHP 321 (1331)
Q Consensus 244 l~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~--V~sva 321 (1331)
..+..... +..-..+|++++.+. +++++++.-.+..+++||+...+.+++ ..||... +..-+
T Consensus 383 ~e~~~dr~-------lise~~~its~~iS~---d~k~~LvnL~~qei~LWDl~e~~lv~k------Y~Ghkq~~fiIrSC 446 (519)
T KOG0293|consen 383 REARVDRG-------LISEEQPITSFSISK---DGKLALVNLQDQEIHLWDLEENKLVRK------YFGHKQGHFIIRSC 446 (519)
T ss_pred hhhhhhhc-------cccccCceeEEEEcC---CCcEEEEEcccCeeEEeecchhhHHHH------hhcccccceEEEec
Confidence 88754332 233456799999998 899999999999999999998887776 4556542 33344
Q ss_pred CCCCC-cee-eeeecce--eeeeecCccccccccccccccCCCccccccccceEEEEEEeccCCccEeeecceeEEEEee
Q 000722 322 RAPNL-DIL-TCVKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISE 397 (1331)
Q Consensus 322 fspdg-~lL-a~s~Dg~--IWdl~~~~~~~l~~~~~~~~~~~~~~~l~~h~~~~I~~la~sp~~~~lLAtGs~DG~Il~V 397 (1331)
|.-.. .++ +||+|++ ||+..++ .++.++.+|.+ .|+|++|+|.++.++|++++||+| ||
T Consensus 447 Fgg~~~~fiaSGSED~kvyIWhr~sg---------------kll~~LsGHs~-~vNcVswNP~~p~m~ASasDDgtI-RI 509 (519)
T KOG0293|consen 447 FGGGNDKFIASGSEDSKVYIWHRISG---------------KLLAVLSGHSK-TVNCVSWNPADPEMFASASDDGTI-RI 509 (519)
T ss_pred cCCCCcceEEecCCCceEEEEEccCC---------------ceeEeecCCcc-eeeEEecCCCCHHHhhccCCCCeE-EE
Confidence 54333 344 7889986 7887764 56778999999 999999999999999999999998 99
Q ss_pred cCCC
Q 000722 398 FDPR 401 (1331)
Q Consensus 398 WDlr 401 (1331)
|.+.
T Consensus 510 Wg~~ 513 (519)
T KOG0293|consen 510 WGPS 513 (519)
T ss_pred ecCC
Confidence 9875
No 39
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.92 E-value=1.9e-25 Score=243.37 Aligned_cols=243 Identities=22% Similarity=0.363 Sum_probs=199.0
Q ss_pred ccccccCCCcEEEEEeecCCceeEeecCCCceeeeccccceEEeeeccCCcccchhhhhhhhhhcccccccCCCCccccc
Q 000722 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMR 83 (1331)
Q Consensus 4 l~~L~gHs~~V~~lafSPdg~~LaSgs~DGtV~VWD~~tg~~i~s~~~~~~~~i~~vspdg~~Lasgs~d~~g~~l~~l~ 83 (1331)
++.|.||++.|.|+.|.. +.|++|+.|.+|+|||+++|+++.++- ||.
T Consensus 230 ~~~L~GHtGSVLCLqyd~--rviisGSSDsTvrvWDv~tge~l~tli-hHc----------------------------- 277 (499)
T KOG0281|consen 230 LKILTGHTGSVLCLQYDE--RVIVSGSSDSTVRVWDVNTGEPLNTLI-HHC----------------------------- 277 (499)
T ss_pred HHhhhcCCCcEEeeeccc--eEEEecCCCceEEEEeccCCchhhHHh-hhc-----------------------------
Confidence 467899999999999974 599999999999999999999988876 331
Q ss_pred CCceeEEeeecchhhHHHHhhhccccccCCcccccccccccCCCCCCCCceEEEEEeeccee-Eeeeeccc-CCCCCccc
Q 000722 84 GGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMR-GRDIPKQE 161 (1331)
Q Consensus 84 gg~V~sVaf~DgtIrvWdl~tg~~l~~~~~~~~~~~~~~V~svafspdg~~lLasgs~d~iI-vwDl~t~~-~~~i~~~~ 161 (1331)
..|.. +.|+. | ++++|+.|..+ +||..... ......+.
T Consensus 278 -eaVLh------------------------------------lrf~n-g--~mvtcSkDrsiaVWdm~sps~it~rrVLv 317 (499)
T KOG0281|consen 278 -EAVLH------------------------------------LRFSN-G--YMVTCSKDRSIAVWDMASPTDITLRRVLV 317 (499)
T ss_pred -ceeEE------------------------------------EEEeC-C--EEEEecCCceeEEEeccCchHHHHHHHHh
Confidence 12222 33332 3 89999999988 89876543 12334568
Q ss_pred cccccceeeehhhcccCCCcceEeecCCCceeeeeehhhheeehhhcCCCccchhhhhHhhhccccEEEeecCCCceEEE
Q 000722 162 LDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLIL 241 (1331)
Q Consensus 162 ~h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrV 241 (1331)
+|...|+.+.| +.++|+++|.|.+|++|++.++++++++. ||...|.|++ | .++++++||.|.+|++
T Consensus 318 GHrAaVNvVdf-------d~kyIVsASgDRTikvW~~st~efvRtl~-gHkRGIAClQ-Y----r~rlvVSGSSDntIRl 384 (499)
T KOG0281|consen 318 GHRAAVNVVDF-------DDKYIVSASGDRTIKVWSTSTCEFVRTLN-GHKRGIACLQ-Y----RDRLVVSGSSDNTIRL 384 (499)
T ss_pred hhhhheeeecc-------ccceEEEecCCceEEEEeccceeeehhhh-cccccceehh-c----cCeEEEecCCCceEEE
Confidence 99999999999 67899999999999999999999999997 9999999998 3 7899999999999999
Q ss_pred EeccCCCccccccccceeeeccCcEEEEEechhccCCCcEEEeecCceeEeeeccchhhhccc---CCCCcccccccccc
Q 000722 242 WSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRI---KPVPKLACHSVASW 318 (1331)
Q Consensus 242 WDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~---~~~~~l~~H~~~V~ 318 (1331)
||+..|.+++. ++||+.-|.++.|. ...|++|+.||+|+|||+..+...+.. -+...+..|++.|.
T Consensus 385 wdi~~G~cLRv------LeGHEeLvRciRFd-----~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVF 453 (499)
T KOG0281|consen 385 WDIECGACLRV------LEGHEELVRCIRFD-----NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVF 453 (499)
T ss_pred EeccccHHHHH------HhchHHhhhheeec-----CceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeE
Confidence 99999998765 79999999999995 479999999999999999876532211 12334678999999
Q ss_pred cCCCCCCCceeeeeecce--eeeeecC
Q 000722 319 CHPRAPNLDILTCVKDSH--IWAIEHP 343 (1331)
Q Consensus 319 svafspdg~lLa~s~Dg~--IWdl~~~ 343 (1331)
.+.|.. -++++++.|.+ |||+..+
T Consensus 454 rLQFD~-fqIvsssHddtILiWdFl~~ 479 (499)
T KOG0281|consen 454 RLQFDE-FQIISSSHDDTILIWDFLNG 479 (499)
T ss_pred EEeecc-eEEEeccCCCeEEEEEcCCC
Confidence 998853 35788888886 7999864
No 40
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.92 E-value=2.1e-25 Score=248.59 Aligned_cols=239 Identities=18% Similarity=0.211 Sum_probs=204.3
Q ss_pred ccccccCCCCCCCCceEEEEEeeccee-EeeeecccCCCCCccccccccceeeehhhcccCCCcceEeecCCCceeeeee
Q 000722 119 VTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLS 197 (1331)
Q Consensus 119 ~~~~V~svafspdg~~lLasgs~d~iI-vwDl~t~~~~~i~~~~~h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWD 197 (1331)
....|..+.|.|+|+ .|++|+..+.+ +|+..+...+. ....|...|+++.| ++++.++++|+.+|.|++|+
T Consensus 95 vkc~V~~v~WtPeGR-RLltgs~SGEFtLWNg~~fnFEt--ilQaHDs~Vr~m~w-----s~~g~wmiSgD~gG~iKyWq 166 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGR-RLLTGSQSGEFTLWNGTSFNFET--ILQAHDSPVRTMKW-----SHNGTWMISGDKGGMIKYWQ 166 (464)
T ss_pred cccceeeEEEcCCCc-eeEeecccccEEEecCceeeHHH--HhhhhcccceeEEE-----ccCCCEEEEcCCCceEEecc
Confidence 356788999999998 66667666666 99876544333 36789999999999 78999999999999999999
Q ss_pred hhhheeehhhcCCCccchhhhhHhhhccccEEEeecCCCceEEEEeccCCCccccccccceeeeccCcEEEEEechhccC
Q 000722 198 MISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGG 277 (1331)
Q Consensus 198 l~t~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~d 277 (1331)
..- ..++.+...|...|.+++ |+|+...|++||.||+|+|||....+.. ..+.||.-.|.+++||| .
T Consensus 167 pnm-nnVk~~~ahh~eaIRdla---fSpnDskF~t~SdDg~ikiWdf~~~kee------~vL~GHgwdVksvdWHP---~ 233 (464)
T KOG0284|consen 167 PNM-NNVKIIQAHHAEAIRDLA---FSPNDSKFLTCSDDGTIKIWDFRMPKEE------RVLRGHGWDVKSVDWHP---T 233 (464)
T ss_pred cch-hhhHHhhHhhhhhhheec---cCCCCceeEEecCCCeEEEEeccCCchh------heeccCCCCcceeccCC---c
Confidence 763 445555535669999998 8999999999999999999999887643 34799999999999999 7
Q ss_pred CCcEEEeecCceeEeeeccchhhhcccCCCCcccccccccccCCCCCCCcee-eeeecce--eeeeecCccccccccccc
Q 000722 278 SPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDIL-TCVKDSH--IWAIEHPTYSALTRPLCE 354 (1331)
Q Consensus 278 g~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg~lL-a~s~Dg~--IWdl~~~~~~~l~~~~~~ 354 (1331)
..+|++||.|..|++||.+++.|+.+ +.+|.+.|..+.|++++.+| ++|.|.. ++|+++.
T Consensus 234 kgLiasgskDnlVKlWDprSg~cl~t------lh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~m----------- 296 (464)
T KOG0284|consen 234 KGLIASGSKDNLVKLWDPRSGSCLAT------LHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTM----------- 296 (464)
T ss_pred cceeEEccCCceeEeecCCCcchhhh------hhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHh-----------
Confidence 88999999999999999999999987 79999999999999999865 7888884 8998842
Q ss_pred cccCCCccccccccceEEEEEEeccCCccEeeecceeEEEEeecCCC
Q 000722 355 LSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPR 401 (1331)
Q Consensus 355 ~~~~~~~~~l~~h~~~~I~~la~sp~~~~lLAtGs~DG~Il~VWDlr 401 (1331)
+.+.++++|.+ .+++++|||....++.+|+.||.| ..|.+-
T Consensus 297 ----kEl~~~r~Hkk-dv~~~~WhP~~~~lftsgg~Dgsv-vh~~v~ 337 (464)
T KOG0284|consen 297 ----KELFTYRGHKK-DVTSLTWHPLNESLFTSGGSDGSV-VHWVVG 337 (464)
T ss_pred ----HHHHHhhcchh-hheeeccccccccceeeccCCCce-EEEecc
Confidence 34668889999 899999999999999999999998 588875
No 41
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.92 E-value=8.6e-25 Score=239.64 Aligned_cols=249 Identities=19% Similarity=0.256 Sum_probs=213.6
Q ss_pred cccccccccccCCCCCCCCceEEEEEeeccee-EeeeecccCCCCCccccccccceeeehhhcccCCCcceEeecCCCce
Q 000722 114 TAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGV 192 (1331)
Q Consensus 114 ~~~~~~~~~V~svafspdg~~lLasgs~d~iI-vwDl~t~~~~~i~~~~~h~~~V~~Vaf~P~s~Spdg~~LasGs~DGt 192 (1331)
.+.+| .+.|+|+++.|.+. ||++|+.|+++ +||+.+++.+ .++.+|-..|+.+++ |+.-+|+++++.|+.
T Consensus 146 Vi~gH-lgWVr~vavdP~n~-wf~tgs~DrtikIwDlatg~Lk--ltltGhi~~vr~vav-----S~rHpYlFs~gedk~ 216 (460)
T KOG0285|consen 146 VISGH-LGWVRSVAVDPGNE-WFATGSADRTIKIWDLATGQLK--LTLTGHIETVRGVAV-----SKRHPYLFSAGEDKQ 216 (460)
T ss_pred hhhhc-cceEEEEeeCCCce-eEEecCCCceeEEEEcccCeEE--Eeecchhheeeeeee-----cccCceEEEecCCCe
Confidence 34455 88999999999765 99999999999 9999997653 467889999999999 667889999999999
Q ss_pred eeeeehhhheeehhhcCCCccchhhhhHhhhccccEEEeecCCCceEEEEeccCCCccccccccceeeeccCcEEEEEec
Q 000722 193 IRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELS 272 (1331)
Q Consensus 193 IrlWDl~t~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafs 272 (1331)
|++||++..+.++.+. ||-+.|.|+. .+|.-+.|++|+.|.++||||+++...+ .++.||...|.++.+.
T Consensus 217 VKCwDLe~nkvIR~Yh-GHlS~V~~L~---lhPTldvl~t~grDst~RvWDiRtr~~V------~~l~GH~~~V~~V~~~ 286 (460)
T KOG0285|consen 217 VKCWDLEYNKVIRHYH-GHLSGVYCLD---LHPTLDVLVTGGRDSTIRVWDIRTRASV------HVLSGHTNPVASVMCQ 286 (460)
T ss_pred eEEEechhhhhHHHhc-cccceeEEEe---ccccceeEEecCCcceEEEeeecccceE------EEecCCCCcceeEEee
Confidence 9999999999999997 9999999998 7899999999999999999999998644 4589999999999999
Q ss_pred hhccCCCcEEEeecCceeEeeeccchhhhcccCCCCcccccccccccCCCCCCCcee-eeeecc-eeeeeecCccccccc
Q 000722 273 RVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDIL-TCVKDS-HIWAIEHPTYSALTR 350 (1331)
Q Consensus 273 p~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg~lL-a~s~Dg-~IWdl~~~~~~~l~~ 350 (1331)
| ....+++||.|++|++||++.|+...+ +..|...|.+++.+|....+ +++.|. +-|++..+.
T Consensus 287 ~---~dpqvit~S~D~tvrlWDl~agkt~~t------lt~hkksvral~lhP~e~~fASas~dnik~w~~p~g~------ 351 (460)
T KOG0285|consen 287 P---TDPQVITGSHDSTVRLWDLRAGKTMIT------LTHHKKSVRALCLHPKENLFASASPDNIKQWKLPEGE------ 351 (460)
T ss_pred c---CCCceEEecCCceEEEeeeccCceeEe------eecccceeeEEecCCchhhhhccCCccceeccCCccc------
Confidence 8 678999999999999999999987666 78899999999999997755 566666 479887652
Q ss_pred cccccccCCCccccccccceEEEEEEeccCCccEeeecceeEEEEeecCCCCCCCCCCC
Q 000722 351 PLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPRSLPAVAPL 409 (1331)
Q Consensus 351 ~~~~~~~~~~~~~l~~h~~~~I~~la~sp~~~~lLAtGs~DG~Il~VWDlr~~p~i~~~ 409 (1331)
.++.+.+|+. .|.++.... ++ ++++|+++|.+ ..||.++...+...
T Consensus 352 ---------f~~nlsgh~~-iintl~~ns-D~-v~~~G~dng~~-~fwdwksg~nyQ~~ 397 (460)
T KOG0285|consen 352 ---------FLQNLSGHNA-IINTLSVNS-DG-VLVSGGDNGSI-MFWDWKSGHNYQRG 397 (460)
T ss_pred ---------hhhccccccc-eeeeeeecc-Cc-eEEEcCCceEE-EEEecCcCcccccc
Confidence 2445778888 899999887 35 48999999998 79999876655543
No 42
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.92 E-value=6.8e-24 Score=250.31 Aligned_cols=247 Identities=18% Similarity=0.240 Sum_probs=200.3
Q ss_pred ccccccCCCCCCCCceEEEEEeecceeEeeeecccCCCCCccccccccceeeehhhcccCCCcceEeecCCCceeeeeeh
Q 000722 119 VTSGFASPPPSTKGRHFLVICCVNKAIFLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSM 198 (1331)
Q Consensus 119 ~~~~V~svafspdg~~lLasgs~d~iIvwDl~t~~~~~i~~~~~h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl 198 (1331)
|...|++++|+.+.. ++++|+.+.+.+|+..+++ ++.++ ..+++.|..|. |.++++++|...|.+.+||+
T Consensus 372 HR~dVRsl~vS~d~~-~~~Sga~~SikiWn~~t~k--ciRTi--~~~y~l~~~Fv-----pgd~~Iv~G~k~Gel~vfdl 441 (888)
T KOG0306|consen 372 HRSDVRSLCVSSDSI-LLASGAGESIKIWNRDTLK--CIRTI--TCGYILASKFV-----PGDRYIVLGTKNGELQVFDL 441 (888)
T ss_pred chhheeEEEeecCce-eeeecCCCcEEEEEccCcc--eeEEe--ccccEEEEEec-----CCCceEEEeccCCceEEEEe
Confidence 367788899998876 8888888889999998855 44333 34589999994 57899999999999999999
Q ss_pred hhheeehhhcCCCccchhhhhHhhhccccEEEeecCCCceEEEEeccCCCcc-----c--cccccceeeeccCcEEEEEe
Q 000722 199 ISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDS-----R--ELVPKLSLKAHDGGVVAVEL 271 (1331)
Q Consensus 199 ~t~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrVWDl~tg~~~-----~--~~~~~~~l~gH~~~V~svaf 271 (1331)
.+...+.++. +|.+.+++++ .+||+..+++||.|.+|++||..--..+ + .+....+++ -...|.|+.+
T Consensus 442 aS~~l~Eti~-AHdgaIWsi~---~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLe-l~ddvL~v~~ 516 (888)
T KOG0306|consen 442 ASASLVETIR-AHDGAIWSIS---LSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLE-LEDDVLCVSV 516 (888)
T ss_pred ehhhhhhhhh-ccccceeeee---ecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEe-ccccEEEEEE
Confidence 9999998887 9999999998 8999999999999999999997532110 0 111112222 3567999999
Q ss_pred chhccCCCcEEEeecCceeEeeeccchhhhcccCCCCcccccccccccCCCCCCCcee-eeeecce--eeeeecCccccc
Q 000722 272 SRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDIL-TCVKDSH--IWAIEHPTYSAL 348 (1331)
Q Consensus 272 sp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg~lL-a~s~Dg~--IWdl~~~~~~~l 348 (1331)
+| |+.+|+.+=-|.+|+||-+++.+..-+ +-||.-+|.|+..+||+.++ +||.|.. ||-++-+
T Consensus 517 Sp---dgk~LaVsLLdnTVkVyflDtlKFfls------LYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFG----- 582 (888)
T KOG0306|consen 517 SP---DGKLLAVSLLDNTVKVYFLDTLKFFLS------LYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFG----- 582 (888)
T ss_pred cC---CCcEEEEEeccCeEEEEEecceeeeee------ecccccceeEEeccCCcCeEEeccCCCceEEeccccc-----
Confidence 99 999999999999999999988765444 78999999999999999965 7888875 8988754
Q ss_pred cccccccccCCCccccccccceEEEEEEeccCCccEeeecceeEEEEeecCCCCCCCCC
Q 000722 349 TRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPRSLPAVA 407 (1331)
Q Consensus 349 ~~~~~~~~~~~~~~~l~~h~~~~I~~la~sp~~~~lLAtGs~DG~Il~VWDlr~~p~i~ 407 (1331)
.|...+-.|.+ .|.++.|.| +.+++.+++.||.| +-||-.+...+.
T Consensus 583 ----------DCHKS~fAHdD-Svm~V~F~P-~~~~FFt~gKD~kv-KqWDg~kFe~iq 628 (888)
T KOG0306|consen 583 ----------DCHKSFFAHDD-SVMSVQFLP-KTHLFFTCGKDGKV-KQWDGEKFEEIQ 628 (888)
T ss_pred ----------hhhhhhhcccC-ceeEEEEcc-cceeEEEecCcceE-Eeechhhhhhhe
Confidence 34556778888 899999999 68889999999998 899976544333
No 43
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=2.4e-24 Score=225.31 Aligned_cols=281 Identities=15% Similarity=0.206 Sum_probs=230.2
Q ss_pred cccccccCCCcEEEEEeecCCceeEeecCCCceeeeccccceEEeeeccCCcccchhhh--hhhhhhcccccccCCCCcc
Q 000722 3 RLKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVG--AKLEKLAEGELEHKGKPTE 80 (1331)
Q Consensus 3 ~l~~L~gHs~~V~~lafSPdg~~LaSgs~DGtV~VWD~~tg~~i~s~~~~~~~~i~~vs--pdg~~Lasgs~d~~g~~l~ 80 (1331)
+++.|.+|.+.|..+.|+-+|+|.+|++.|++|++||...|.+++++..|+ .++.-+. .+...+++++
T Consensus 9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG-~EVlD~~~s~Dnskf~s~G--------- 78 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHG-HEVLDAALSSDNSKFASCG--------- 78 (307)
T ss_pred hceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCC-ceeeeccccccccccccCC---------
Confidence 567889999999999999999999999999999999999999999999543 4443332 4555555543
Q ss_pred cccCCceeEEeeecchhhHHHHhhhccccccCCcccccccccccCCCCCCCCceEEEEEeeccee-EeeeecccCCCCCc
Q 000722 81 AMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPK 159 (1331)
Q Consensus 81 ~l~gg~V~sVaf~DgtIrvWdl~tg~~l~~~~~~~~~~~~~~V~svafspdg~~lLasgs~d~iI-vwDl~t~~~~~i~~ 159 (1331)
.|..|.+||+.+++.. ....+| ...|+.+.|+.+.. ++++|+-|..+ .||-++.....++.
T Consensus 79 ------------gDk~v~vwDV~TGkv~----Rr~rgH-~aqVNtV~fNeesS-Vv~SgsfD~s~r~wDCRS~s~ePiQi 140 (307)
T KOG0316|consen 79 ------------GDKAVQVWDVNTGKVD----RRFRGH-LAQVNTVRFNEESS-VVASGSFDSSVRLWDCRSRSFEPIQI 140 (307)
T ss_pred ------------CCceEEEEEcccCeee----eecccc-cceeeEEEecCcce-EEEeccccceeEEEEcccCCCCccch
Confidence 4889999999999875 556666 78899999999887 99999999888 89999887778888
Q ss_pred cccccccceeeehhhcccCCCcceEeecCCCceeeeeehhhheeehhhcCCCccchhhhhHhhhccccEEEeecCCCceE
Q 000722 160 QELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLL 239 (1331)
Q Consensus 160 ~~~h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtI 239 (1331)
+....+.|.+|.. .+..|++||-||++|.||++.|+....+. .++|+|++ |+++++..+.++.|+++
T Consensus 141 ldea~D~V~Si~v-------~~heIvaGS~DGtvRtydiR~G~l~sDy~---g~pit~vs---~s~d~nc~La~~l~stl 207 (307)
T KOG0316|consen 141 LDEAKDGVSSIDV-------AEHEIVAGSVDGTVRTYDIRKGTLSSDYF---GHPITSVS---FSKDGNCSLASSLDSTL 207 (307)
T ss_pred hhhhcCceeEEEe-------cccEEEeeccCCcEEEEEeecceeehhhc---CCcceeEE---ecCCCCEEEEeecccee
Confidence 8878899999999 68899999999999999999998877664 45899998 89999999999999999
Q ss_pred EEEeccCCCccccccccceeeeccCcEE--EEEechhccCCCcEEEeecCceeEeeeccchhhhcccCCCCcccccccc-
Q 000722 240 ILWSADHGQDSRELVPKLSLKAHDGGVV--AVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVA- 316 (1331)
Q Consensus 240 rVWDl~tg~~~~~~~~~~~l~gH~~~V~--svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~- 316 (1331)
++.|-.+|+.++. ++||...-. ..++.. ...++++||+||.|.+||+.....+.. +..|...
T Consensus 208 rLlDk~tGklL~s------YkGhkn~eykldc~l~q---sdthV~sgSEDG~Vy~wdLvd~~~~sk------~~~~~~v~ 272 (307)
T KOG0316|consen 208 RLLDKETGKLLKS------YKGHKNMEYKLDCCLNQ---SDTHVFSGSEDGKVYFWDLVDETQISK------LSVVSTVI 272 (307)
T ss_pred eecccchhHHHHH------hcccccceeeeeeeecc---cceeEEeccCCceEEEEEeccceeeee------eccCCcee
Confidence 9999999998765 578876543 345554 567999999999999999998887665 4555554
Q ss_pred cccCCCCCCCc-eeeeeecc-eeee
Q 000722 317 SWCHPRAPNLD-ILTCVKDS-HIWA 339 (1331)
Q Consensus 317 V~svafspdg~-lLa~s~Dg-~IWd 339 (1331)
|..+.++|.-. +++++..+ ..|.
T Consensus 273 v~dl~~hp~~~~f~~A~~~~~~~~~ 297 (307)
T KOG0316|consen 273 VTDLSCHPTMDDFITATGHGDLFWY 297 (307)
T ss_pred EEeeecccCccceeEecCCceecee
Confidence 77899999855 55544333 2454
No 44
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.91 E-value=6.5e-24 Score=223.81 Aligned_cols=268 Identities=19% Similarity=0.304 Sum_probs=216.6
Q ss_pred ccccCCCcEEEEEeecCCceeEeecCCCceeeeccccceE--EeeeccCCcccchhhhhhhhhhcccccccCCCCccccc
Q 000722 6 AFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQV--IYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMR 83 (1331)
Q Consensus 6 ~L~gHs~~V~~lafSPdg~~LaSgs~DGtV~VWD~~tg~~--i~s~~~~~~~~i~~vspdg~~Lasgs~d~~g~~l~~l~ 83 (1331)
+++-....|+.+...|+++.||+++ ...||+||+.++.. +.+|+.+
T Consensus 35 Tiqh~dsqVNrLeiTpdk~~LAaa~-~qhvRlyD~~S~np~Pv~t~e~h------------------------------- 82 (311)
T KOG0315|consen 35 TIQHPDSQVNRLEITPDKKDLAAAG-NQHVRLYDLNSNNPNPVATFEGH------------------------------- 82 (311)
T ss_pred EEecCccceeeEEEcCCcchhhhcc-CCeeEEEEccCCCCCceeEEecc-------------------------------
Confidence 4444456799999999999999885 46899999987543 4444422
Q ss_pred CCceeEEeeecchhhHHHHhhhccccccCCcccccccccccCCCCCCCCceEEEEEeeccee-EeeeecccCCCCCcccc
Q 000722 84 GGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQEL 162 (1331)
Q Consensus 84 gg~V~sVaf~DgtIrvWdl~tg~~l~~~~~~~~~~~~~~V~svafspdg~~lLasgs~d~iI-vwDl~t~~~~~i~~~~~ 162 (1331)
...|.++.|..+|+ ++.+|++|+.+ +||++..... ..-.
T Consensus 83 ------------------------------------~kNVtaVgF~~dgr-WMyTgseDgt~kIWdlR~~~~q---R~~~ 122 (311)
T KOG0315|consen 83 ------------------------------------TKNVTAVGFQCDGR-WMYTGSEDGTVKIWDLRSLSCQ---RNYQ 122 (311)
T ss_pred ------------------------------------CCceEEEEEeecCe-EEEecCCCceEEEEeccCcccc---hhcc
Confidence 33456677788997 99999999999 8999874432 3445
Q ss_pred ccccceeeehhhcccCCCcceEeecCCCceeeeeehhhheeehhhcCCCccchhhhhHhhhccccEEEeecCCCceEEEE
Q 000722 163 DNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILW 242 (1331)
Q Consensus 163 h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrVW 242 (1331)
|..+|+++.. +|+...|++|..+|.|++||+....+.+.+...-...|.++. ..++|.+++.+..-|.+.+|
T Consensus 123 ~~spVn~vvl-----hpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~---v~~dgsml~a~nnkG~cyvW 194 (311)
T KOG0315|consen 123 HNSPVNTVVL-----HPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLT---VMPDGSMLAAANNKGNCYVW 194 (311)
T ss_pred CCCCcceEEe-----cCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEE---EcCCCcEEEEecCCccEEEE
Confidence 6799999999 567889999999999999999988777777656677888887 89999999999999999999
Q ss_pred eccCCCccccccccceeeeccCcEEEEEechhccCCCcEEEeecCceeEeeeccchhhhcccCCCCcccccccccccCCC
Q 000722 243 SADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPR 322 (1331)
Q Consensus 243 Dl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svaf 322 (1331)
++-+.+....+.|+..++.|++.+..+.++| ++++|+++|.|.+++||+.++.- +....+.+|...+|..+|
T Consensus 195 ~l~~~~~~s~l~P~~k~~ah~~~il~C~lSP---d~k~lat~ssdktv~iwn~~~~~-----kle~~l~gh~rWvWdc~F 266 (311)
T KOG0315|consen 195 RLLNHQTASELEPVHKFQAHNGHILRCLLSP---DVKYLATCSSDKTVKIWNTDDFF-----KLELVLTGHQRWVWDCAF 266 (311)
T ss_pred EccCCCccccceEhhheecccceEEEEEECC---CCcEEEeecCCceEEEEecCCce-----eeEEEeecCCceEEeeee
Confidence 9998877777888889999999999999999 89999999999999999998761 111237899999999999
Q ss_pred CCCCcee-eeeecce--eeeeecCccccccccccccccCCCccccccccceEEEEEEe
Q 000722 323 APNLDIL-TCVKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVA 377 (1331)
Q Consensus 323 spdg~lL-a~s~Dg~--IWdl~~~~~~~l~~~~~~~~~~~~~~~l~~h~~~~I~~la~ 377 (1331)
|.||++| +++.|+. +|++..+ +.+..+.+|.+ ...|++.
T Consensus 267 S~dg~YlvTassd~~~rlW~~~~~---------------k~v~qy~gh~K-~~vc~~l 308 (311)
T KOG0315|consen 267 SADGEYLVTASSDHTARLWDLSAG---------------KEVRQYQGHHK-AAVCVAL 308 (311)
T ss_pred ccCccEEEecCCCCceeecccccC---------------ceeeecCCccc-ccEEEEe
Confidence 9999977 7788874 8999865 23445667777 5555553
No 45
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.91 E-value=2.6e-24 Score=238.29 Aligned_cols=284 Identities=19% Similarity=0.244 Sum_probs=224.6
Q ss_pred cCCCcEEEEEeecCCceeEeecCCCceeeeccccceEEeeeccCCcccchhhh-----hhhhhhcccccccCCCCccccc
Q 000722 9 PTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVG-----AKLEKLAEGELEHKGKPTEAMR 83 (1331)
Q Consensus 9 gHs~~V~~lafSPdg~~LaSgs~DGtV~VWD~~tg~~i~s~~~~~~~~i~~vs-----pdg~~Lasgs~d~~g~~l~~l~ 83 (1331)
-|.++|.++... +++|+||++||+++|||. .|+++..+. +|.+.+..+. +....+++++
T Consensus 103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~-~Gk~~~~~~-Ght~~ik~v~~v~~n~~~~~fvsas------------ 166 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDL-KGKSIKTIV-GHTGPIKSVAWVIKNSSSCLFVSAS------------ 166 (423)
T ss_pred cchhhhhhhccc--CceEEEeecCCeeEEEec-CCceEEEEe-cCCcceeeeEEEecCCccceEEEec------------
Confidence 488899998887 789999999999999995 588888887 4444444332 1111222222
Q ss_pred CCceeEEeeecchhhHHHHhhhccccccCCcccccccccccCCCCCCCCceEEEEEeeccee-Eeeeec-----------
Q 000722 84 GGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVT----------- 151 (1331)
Q Consensus 84 gg~V~sVaf~DgtIrvWdl~tg~~l~~~~~~~~~~~~~~V~svafspdg~~lLasgs~d~iI-vwDl~t----------- 151 (1331)
.|.++++|.++.+...........|| ...|-++...++|. .+++|+.|..+ +|+..+
T Consensus 167 ---------~Dqtl~Lw~~~~~~~~~~~~~~~~GH-k~~V~sVsv~~sgt-r~~SgS~D~~lkiWs~~~~~~~~~E~~s~ 235 (423)
T KOG0313|consen 167 ---------MDQTLRLWKWNVGENKVKALKVCRGH-KRSVDSVSVDSSGT-RFCSGSWDTMLKIWSVETDEEDELESSSN 235 (423)
T ss_pred ---------CCceEEEEEecCchhhhhHHhHhccc-ccceeEEEecCCCC-eEEeecccceeeecccCCCccccccccch
Confidence 58899999988776554333344466 88899999999997 88999999988 897211
Q ss_pred ------------ccCCCCCccccccccceeeehhhcccCCCcceEeecCCCceeeeeehhhheeehhhcCCCccchhhhh
Q 000722 152 ------------MRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLM 219 (1331)
Q Consensus 152 ------------~~~~~i~~~~~h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~~~v~~~~~gH~~~V~~va 219 (1331)
+....+..+.+|..+|.+|.| + +...+++++.|.+|+.||+.++.++..+. .....+|+.
T Consensus 236 ~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w-----~-d~~v~yS~SwDHTIk~WDletg~~~~~~~--~~ksl~~i~ 307 (423)
T KOG0313|consen 236 RRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVW-----S-DATVIYSVSWDHTIKVWDLETGGLKSTLT--TNKSLNCIS 307 (423)
T ss_pred hhhhhhhhhhcccccCceEEecccccceeeEEE-----c-CCCceEeecccceEEEEEeecccceeeee--cCcceeEee
Confidence 011134456789999999999 3 47789999999999999999999988775 567888998
Q ss_pred HhhhccccEEEeecCCCceEEEEeccCCCccccccccceeeeccCcEEEEEechhccCCCcEEEeecCceeEeeeccchh
Q 000722 220 TFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFK 299 (1331)
Q Consensus 220 wf~~spdg~lLaSgs~DgtIrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~ 299 (1331)
.++..++|++||.|..+++||.+++.-. ....++.+|.+.|.++.|+| .+..+|++|+.|+++++||+++.+
T Consensus 308 ---~~~~~~Ll~~gssdr~irl~DPR~~~gs---~v~~s~~gH~nwVssvkwsp--~~~~~~~S~S~D~t~klWDvRS~k 379 (423)
T KOG0313|consen 308 ---YSPLSKLLASGSSDRHIRLWDPRTGDGS---VVSQSLIGHKNWVSSVKWSP--TNEFQLVSGSYDNTVKLWDVRSTK 379 (423)
T ss_pred ---cccccceeeecCCCCceeecCCCCCCCc---eeEEeeecchhhhhheecCC--CCceEEEEEecCCeEEEEEeccCC
Confidence 7889999999999999999999987531 34567899999999999999 477899999999999999999766
Q ss_pred -hhcccCCCCcccccccccccCCCCCCCceeeeeecceeeeee
Q 000722 300 -ELRRIKPVPKLACHSVASWCHPRAPNLDILTCVKDSHIWAIE 341 (1331)
Q Consensus 300 -~l~~~~~~~~l~~H~~~V~svafspdg~lLa~s~Dg~IWdl~ 341 (1331)
++.. +.+|.+.|.++.|...+.+++||.|++|.-.+
T Consensus 380 ~plyd------I~~h~DKvl~vdW~~~~~IvSGGaD~~l~i~~ 416 (423)
T KOG0313|consen 380 APLYD------IAGHNDKVLSVDWNEGGLIVSGGADNKLRIFK 416 (423)
T ss_pred Cccee------eccCCceEEEEeccCCceEEeccCcceEEEec
Confidence 4444 78999999999999888888999999865444
No 46
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.90 E-value=2.1e-23 Score=246.25 Aligned_cols=283 Identities=17% Similarity=0.245 Sum_probs=234.4
Q ss_pred cccccCCCcEEEEEeecCCceeEeecCCCceeeeccccceEEeeeccCCcccchhhhhhhhhhcccccccCCCCcccccC
Q 000722 5 KAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRG 84 (1331)
Q Consensus 5 ~~L~gHs~~V~~lafSPdg~~LaSgs~DGtV~VWD~~tg~~i~s~~~~~~~~i~~vspdg~~Lasgs~d~~g~~l~~l~g 84 (1331)
-.+.||...|.+++||.+...++|| ..+.|+||+..+.+|++++.++
T Consensus 367 i~~~GHR~dVRsl~vS~d~~~~~Sg-a~~SikiWn~~t~kciRTi~~~-------------------------------- 413 (888)
T KOG0306|consen 367 IEIGGHRSDVRSLCVSSDSILLASG-AGESIKIWNRDTLKCIRTITCG-------------------------------- 413 (888)
T ss_pred eeeccchhheeEEEeecCceeeeec-CCCcEEEEEccCcceeEEeccc--------------------------------
Confidence 3568999999999999998888877 5678999999999999998732
Q ss_pred CceeEEeeecchhhHHHHhhhccccccCCcccccccccccCCCCCCCCceEEEEEeeccee-EeeeecccCCCCCccccc
Q 000722 85 GSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQELD 163 (1331)
Q Consensus 85 g~V~sVaf~DgtIrvWdl~tg~~l~~~~~~~~~~~~~~V~svafspdg~~lLasgs~d~iI-vwDl~t~~~~~i~~~~~h 163 (1331)
.+.+..|.|.++ +++.|..++-+ ++|+.+... +.....|
T Consensus 414 -------------------------------------y~l~~~Fvpgd~-~Iv~G~k~Gel~vfdlaS~~l--~Eti~AH 453 (888)
T KOG0306|consen 414 -------------------------------------YILASKFVPGDR-YIVLGTKNGELQVFDLASASL--VETIRAH 453 (888)
T ss_pred -------------------------------------cEEEEEecCCCc-eEEEeccCCceEEEEeehhhh--hhhhhcc
Confidence 123455778776 88888888866 789887543 4456799
Q ss_pred cccceeeehhhcccCCCcceEeecCCCceeeeeehhh-----heeehhhc------CCCccchhhhhHhhhccccEEEee
Q 000722 164 NKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMIS-----WKLVRRYT------GGHKGSISCLMTFMASSGEALLVS 232 (1331)
Q Consensus 164 ~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t-----~~~v~~~~------~gH~~~V~~vawf~~spdg~lLaS 232 (1331)
.+.|.+++. +||+..+++||.|.+|++||..- +...+.+. -.-...|.|+. +||||.+|+.
T Consensus 454 dgaIWsi~~-----~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~---~Spdgk~LaV 525 (888)
T KOG0306|consen 454 DGAIWSISL-----SPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVS---VSPDGKLLAV 525 (888)
T ss_pred ccceeeeee-----cCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEE---EcCCCcEEEE
Confidence 999999999 78999999999999999999852 11111111 02456789998 8999999999
Q ss_pred cCCCceEEEEeccCCCccccccccceeeeccCcEEEEEechhccCCCcEEEeecCceeEeeeccchhhhcccCCCCcccc
Q 000722 233 GGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLAC 312 (1331)
Q Consensus 233 gs~DgtIrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~ 312 (1331)
+-.|.+|+||-+++-+. ..++.||.-+|.|+..+| ++.+++|||.|++|+||-++=|.|.+. +.+
T Consensus 526 sLLdnTVkVyflDtlKF------flsLYGHkLPV~smDIS~---DSklivTgSADKnVKiWGLdFGDCHKS------~fA 590 (888)
T KOG0306|consen 526 SLLDNTVKVYFLDTLKF------FLSLYGHKLPVLSMDISP---DSKLIVTGSADKNVKIWGLDFGDCHKS------FFA 590 (888)
T ss_pred EeccCeEEEEEecceee------eeeecccccceeEEeccC---CcCeEEeccCCCceEEeccccchhhhh------hhc
Confidence 99999999999988653 445899999999999999 899999999999999999999998777 789
Q ss_pred cccccccCCCCCCCc-eeeeeeccee--eeeecCccccccccccccccCCCccccccccceEEEEEEeccCCccEeeecc
Q 000722 313 HSVASWCHPRAPNLD-ILTCVKDSHI--WAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGT 389 (1331)
Q Consensus 313 H~~~V~svafspdg~-lLa~s~Dg~I--Wdl~~~~~~~l~~~~~~~~~~~~~~~l~~h~~~~I~~la~sp~~~~lLAtGs 389 (1331)
|.+.|.++.|-|+.. +++||.|+.| ||-..- ..++.+.+|.. .|||++.+| +|.++++++
T Consensus 591 HdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kF---------------e~iq~L~~H~~-ev~cLav~~-~G~~vvs~s 653 (888)
T KOG0306|consen 591 HDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKF---------------EEIQKLDGHHS-EVWCLAVSP-NGSFVVSSS 653 (888)
T ss_pred ccCceeEEEEcccceeEEEecCcceEEeechhhh---------------hhheeeccchh-eeeeeEEcC-CCCeEEecc
Confidence 999999999999866 5599999975 876642 45778899998 999999999 577799999
Q ss_pred eeEEEEeecCCC
Q 000722 390 NVGVIISEFDPR 401 (1331)
Q Consensus 390 ~DG~Il~VWDlr 401 (1331)
.|..| |+|...
T Consensus 654 hD~sI-RlwE~t 664 (888)
T KOG0306|consen 654 HDKSI-RLWERT 664 (888)
T ss_pred CCcee-Eeeecc
Confidence 99998 999854
No 47
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.89 E-value=7.5e-23 Score=226.01 Aligned_cols=286 Identities=16% Similarity=0.187 Sum_probs=226.0
Q ss_pred ccccccCCCcEEEEEeecCCceeEeecCCCceeeeccccceEEeeeccCCcccchhhh--hhhhhhcccccccCCCCccc
Q 000722 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVG--AKLEKLAEGELEHKGKPTEA 81 (1331)
Q Consensus 4 l~~L~gHs~~V~~lafSPdg~~LaSgs~DGtV~VWD~~tg~~i~s~~~~~~~~i~~vs--pdg~~Lasgs~d~~g~~l~~ 81 (1331)
+-.+.||++.|+|+.|+.+|.+||||+.+|.|+||+..++.....+. .....+..+. |.+..|+.|+
T Consensus 99 ~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~-~e~~dieWl~WHp~a~illAG~---------- 167 (399)
T KOG0296|consen 99 AGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLD-QEVEDIEWLKWHPRAHILLAGS---------- 167 (399)
T ss_pred eeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEee-cccCceEEEEecccccEEEeec----------
Confidence 34678999999999999999999999999999999999999888885 2233333333 5555665554
Q ss_pred ccCCceeEEeeecchhhHHHHhhhccccccCCcccccccccccCCCCCCCCceEEEEEeeccee-EeeeecccCCCCCcc
Q 000722 82 MRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQ 160 (1331)
Q Consensus 82 l~gg~V~sVaf~DgtIrvWdl~tg~~l~~~~~~~~~~~~~~V~svafspdg~~lLasgs~d~iI-vwDl~t~~~~~i~~~ 160 (1331)
.||.+-+|.+..+.. .+.+.+| ..++++=.|.|+|+ .++++.+|+++ +||+.++..... ..
T Consensus 168 -----------~DGsvWmw~ip~~~~----~kv~~Gh-~~~ct~G~f~pdGK-r~~tgy~dgti~~Wn~ktg~p~~~-~~ 229 (399)
T KOG0296|consen 168 -----------TDGSVWMWQIPSQAL----CKVMSGH-NSPCTCGEFIPDGK-RILTGYDDGTIIVWNPKTGQPLHK-IT 229 (399)
T ss_pred -----------CCCcEEEEECCCcce----eeEecCC-CCCcccccccCCCc-eEEEEecCceEEEEecCCCceeEE-ec
Confidence 578888888877422 2455665 88899999999998 77777777766 899999753221 11
Q ss_pred ccccccceeeehhhcccCCCcceEeecCCCceeeeeehhhheeehhhc-------CCCccchhhhhHhhhccccEEEeec
Q 000722 161 ELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYT-------GGHKGSISCLMTFMASSGEALLVSG 233 (1331)
Q Consensus 161 ~~h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~~~v~~~~-------~gH~~~V~~vawf~~spdg~lLaSg 233 (1331)
........|+.+ +..+..++.|+.++.+++-+..+++.+.... ..|...+.|+....++..-.+.++|
T Consensus 230 ~~e~~~~~~~~~-----~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G 304 (399)
T KOG0296|consen 230 QAEGLELPCISL-----NLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACG 304 (399)
T ss_pred ccccCcCCcccc-----ccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcc
Confidence 122456788888 6788999999999999999988888776554 2677888888854556666789999
Q ss_pred CCCceEEEEeccCCCccccccccceeeeccCcEEEEEechhccCCCcEEEeecCceeEeeeccchhhhcccCCCCccccc
Q 000722 234 GSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACH 313 (1331)
Q Consensus 234 s~DgtIrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H 313 (1331)
+.||+|.|||+...+..+ .-.|..+|..+.|-+ ..+|++++.||.|+.||.++|+++.+ ..+|
T Consensus 305 ~vdG~i~iyD~a~~~~R~-------~c~he~~V~~l~w~~----t~~l~t~c~~g~v~~wDaRtG~l~~~------y~GH 367 (399)
T KOG0296|consen 305 SVDGTIAIYDLAASTLRH-------ICEHEDGVTKLKWLN----TDYLLTACANGKVRQWDARTGQLKFT------YTGH 367 (399)
T ss_pred cccceEEEEecccchhhe-------eccCCCceEEEEEcC----cchheeeccCceEEeeeccccceEEE------EecC
Confidence 999999999998765322 345899999999985 57999999999999999999998877 7999
Q ss_pred ccccccCCCCCCCcee-eeeecce--eeee
Q 000722 314 SVASWCHPRAPNLDIL-TCVKDSH--IWAI 340 (1331)
Q Consensus 314 ~~~V~svafspdg~lL-a~s~Dg~--IWdl 340 (1331)
...|.+++++|+.+++ ++|.|++ |+++
T Consensus 368 ~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v 397 (399)
T KOG0296|consen 368 QMGILDFALSPQKRLVVTVSDDNTALVFEV 397 (399)
T ss_pred chheeEEEEcCCCcEEEEecCCCeEEEEec
Confidence 9999999999998855 7888885 6654
No 48
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.89 E-value=1e-22 Score=220.21 Aligned_cols=252 Identities=16% Similarity=0.185 Sum_probs=202.2
Q ss_pred ccccccccCCCCCCCCceEEEEEeeccee-EeeeecccCCCCCccccccccceeeehhhcccCCCcceEeecCCCceeee
Q 000722 117 SNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRV 195 (1331)
Q Consensus 117 ~~~~~~V~svafspdg~~lLasgs~d~iI-vwDl~t~~~~~i~~~~~h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrl 195 (1331)
.++.+.|+.+.|+|+|. +|++|+.|+.| +|+... .+...-.+++|.+.|+.+.| .+|+..|++++.|.+|+.
T Consensus 44 ~gh~geI~~~~F~P~gs-~~aSgG~Dr~I~LWnv~g-dceN~~~lkgHsgAVM~l~~-----~~d~s~i~S~gtDk~v~~ 116 (338)
T KOG0265|consen 44 PGHKGEIYTIKFHPDGS-CFASGGSDRAIVLWNVYG-DCENFWVLKGHSGAVMELHG-----MRDGSHILSCGTDKTVRG 116 (338)
T ss_pred CCCcceEEEEEECCCCC-eEeecCCcceEEEEeccc-cccceeeeccccceeEeeee-----ccCCCEEEEecCCceEEE
Confidence 34488899999999998 88888888876 787542 34445567899999999999 789999999999999999
Q ss_pred eehhhheeehhhcCCCccchhhhhHhhhccccEEEeecCCCceEEEEeccCCCccccccccceeeeccCcEEEEEechhc
Q 000722 196 LSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVM 275 (1331)
Q Consensus 196 WDl~t~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~ 275 (1331)
||.++|++++.+. +|..-|+++. ....+..++.||+.||++++||+++...++++ .....++++.|..
T Consensus 117 wD~~tG~~~rk~k-~h~~~vNs~~--p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~-------~~kyqltAv~f~d-- 184 (338)
T KOG0265|consen 117 WDAETGKRIRKHK-GHTSFVNSLD--PSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTF-------ENKYQLTAVGFKD-- 184 (338)
T ss_pred Eecccceeeehhc-cccceeeecC--ccccCCeEEEecCCCceEEEEeecccchhhcc-------ccceeEEEEEecc--
Confidence 9999999999998 9999999987 23445668899999999999999988776653 2344588999997
Q ss_pred cCCCcEEEeecCceeEeeeccchhhhcccCCCCcccccccccccCCCCCCCcee-eeeecce--eeeeecCccccccccc
Q 000722 276 GGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDIL-TCVKDSH--IWAIEHPTYSALTRPL 352 (1331)
Q Consensus 276 ~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg~lL-a~s~Dg~--IWdl~~~~~~~l~~~~ 352 (1331)
.+..+.+|+-|+.|++||++....+.. +.||.+.|+.+..+++|.++ +.+.|++ +||++.-
T Consensus 185 -~s~qv~sggIdn~ikvWd~r~~d~~~~------lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~--------- 248 (338)
T KOG0265|consen 185 -TSDQVISGGIDNDIKVWDLRKNDGLYT------LSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPF--------- 248 (338)
T ss_pred -cccceeeccccCceeeeccccCcceEE------eecccCceeeEEeccCCCccccccccceEEEEEeccc---------
Confidence 889999999999999999998887776 79999999999999999854 8888986 8999842
Q ss_pred cccccCCCccccccccc---eEEEEEEeccCCccEeeecceeEEEEeecCCCCCCCCC
Q 000722 353 CELSSLVPPQVLAHHKK---LRVYCMVAHSLQPHLVATGTNVGVIISEFDPRSLPAVA 407 (1331)
Q Consensus 353 ~~~~~~~~~~~l~~h~~---~~I~~la~sp~~~~lLAtGs~DG~Il~VWDlr~~p~i~ 407 (1331)
.....++..+.+|.- .....+.|+| ++..+..|+.|..+ ++||...+..+-
T Consensus 249 --~p~~R~v~if~g~~hnfeknlL~cswsp-~~~~i~ags~dr~v-yvwd~~~r~~ly 302 (338)
T KOG0265|consen 249 --APSQRCVKIFQGHIHNFEKNLLKCSWSP-NGTKITAGSADRFV-YVWDTTSRRILY 302 (338)
T ss_pred --CCCCceEEEeecchhhhhhhcceeeccC-CCCccccccccceE-EEeecccccEEE
Confidence 111122333433321 1355678999 57779999999998 799986544333
No 49
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.89 E-value=1.8e-22 Score=246.80 Aligned_cols=242 Identities=21% Similarity=0.335 Sum_probs=202.7
Q ss_pred ccccccCCCcEEEEEeecCCceeEeecCCCceeeecc-ccceEEeeeccCCcccchhhhhhhhhhcccccccCCCCcccc
Q 000722 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNW-EHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAM 82 (1331)
Q Consensus 4 l~~L~gHs~~V~~lafSPdg~~LaSgs~DGtV~VWD~-~tg~~i~s~~~~~~~~i~~vspdg~~Lasgs~d~~g~~l~~l 82 (1331)
++.+.+|...|.+++|+|++.++++++.|++|+|||+ ..+.+++++..|
T Consensus 196 ~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH------------------------------ 245 (456)
T KOG0266|consen 196 LRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGH------------------------------ 245 (456)
T ss_pred hccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCC------------------------------
Confidence 6677999999999999999999999999999999999 555778888733
Q ss_pred cCCceeEEeeecchhhHHHHhhhccccccCCcccccccccccCCCCCCCCceEEEEEeeccee-EeeeecccCCCCCccc
Q 000722 83 RGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQE 161 (1331)
Q Consensus 83 ~gg~V~sVaf~DgtIrvWdl~tg~~l~~~~~~~~~~~~~~V~svafspdg~~lLasgs~d~iI-vwDl~t~~~~~i~~~~ 161 (1331)
...|++++|+|++ +++++|+.|+.+ +||+.+++ ++..+.
T Consensus 246 -------------------------------------~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~--~~~~l~ 285 (456)
T KOG0266|consen 246 -------------------------------------STYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTGE--CVRKLK 285 (456)
T ss_pred -------------------------------------CCceEEEEecCCC-CEEEEecCCCcEEEEeccCCe--EEEeee
Confidence 3346778899999 499999999988 89999854 567799
Q ss_pred cccccceeeehhhcccCCCcceEeecCCCceeeeeehhhhe--eehhhcCCCccc--hhhhhHhhhccccEEEeecCCCc
Q 000722 162 LDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWK--LVRRYTGGHKGS--ISCLMTFMASSGEALLVSGGSDG 237 (1331)
Q Consensus 162 ~h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~~--~v~~~~~gH~~~--V~~vawf~~spdg~lLaSgs~Dg 237 (1331)
.|.+.|++++| ++++.+|++++.||.|++||+.++. ++..+. ++... +++++ |+|++.+|++++.|+
T Consensus 286 ~hs~~is~~~f-----~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~-~~~~~~~~~~~~---fsp~~~~ll~~~~d~ 356 (456)
T KOG0266|consen 286 GHSDGISGLAF-----SPDGNLLVSASYDGTIRVWDLETGSKLCLKLLS-GAENSAPVTSVQ---FSPNGKYLLSASLDR 356 (456)
T ss_pred ccCCceEEEEE-----CCCCCEEEEcCCCccEEEEECCCCceeeeeccc-CCCCCCceeEEE---ECCCCcEEEEecCCC
Confidence 99999999999 7899999999999999999999998 566665 55555 88887 899999999999999
Q ss_pred eEEEEeccCCCccccccccceeeeccCcE---EEEEechhccCCCcEEEeecCceeEeeeccchhhhcccCCCCccccc-
Q 000722 238 LLILWSADHGQDSRELVPKLSLKAHDGGV---VAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACH- 313 (1331)
Q Consensus 238 tIrVWDl~tg~~~~~~~~~~~l~gH~~~V---~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H- 313 (1331)
.+++||+..+..... +.+|...+ .+...++ ++.++++|+.|+.|++||+.++..+.. +.+|
T Consensus 357 ~~~~w~l~~~~~~~~------~~~~~~~~~~~~~~~~~~---~~~~i~sg~~d~~v~~~~~~s~~~~~~------l~~h~ 421 (456)
T KOG0266|consen 357 TLKLWDLRSGKSVGT------YTGHSNLVRCIFSPTLST---GGKLIYSGSEDGSVYVWDSSSGGILQR------LEGHS 421 (456)
T ss_pred eEEEEEccCCcceee------ecccCCcceeEecccccC---CCCeEEEEeCCceEEEEeCCccchhhh------hcCCC
Confidence 999999999887665 46666543 3344454 889999999999999999999877766 6888
Q ss_pred ccccccCCCCCCCceee-ee--ecce--eee
Q 000722 314 SVASWCHPRAPNLDILT-CV--KDSH--IWA 339 (1331)
Q Consensus 314 ~~~V~svafspdg~lLa-~s--~Dg~--IWd 339 (1331)
...+..+.+++...+++ ++ .|+. +|.
T Consensus 422 ~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~ 452 (456)
T KOG0266|consen 422 KAAVSDLSSHPTENLIASSSFEGDGLIRLWK 452 (456)
T ss_pred CCceeccccCCCcCeeeecCcCCCceEEEec
Confidence 88889999999988774 44 4665 454
No 50
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.88 E-value=3.4e-22 Score=260.96 Aligned_cols=274 Identities=19% Similarity=0.248 Sum_probs=204.6
Q ss_pred eecchhhHHHHhhhccccccCCcccccccccccCCCCCCCCceEEEEEeeccee-Eeeeeccc--CCCC--C-ccccccc
Q 000722 92 FYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMR--GRDI--P-KQELDNK 165 (1331)
Q Consensus 92 f~DgtIrvWdl~tg~~l~~~~~~~~~~~~~~V~svafspdg~~lLasgs~d~iI-vwDl~t~~--~~~i--~-~~~~h~~ 165 (1331)
|.+|.+++|+....+............+...|++++|+|+|+ ++++|+.|+.+ +||..+.. .... . ....+..
T Consensus 455 ~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~-~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~ 533 (793)
T PLN00181 455 FLEGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGE-FFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRS 533 (793)
T ss_pred hhhhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCC-EEEEEeCCCEEEEEECCcccccccccccceEEecccC
Confidence 347888999877654322111111223477899999999998 88888888877 89875321 1110 0 1122346
Q ss_pred cceeeehhhcccCCCcceEeecCCCceeeeeehhhheeehhhcCCCccchhhhhHhhhc-cccEEEeecCCCceEEEEec
Q 000722 166 SLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMAS-SGEALLVSGGSDGLLILWSA 244 (1331)
Q Consensus 166 ~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~~~v~~~~~gH~~~V~~vawf~~s-pdg~lLaSgs~DgtIrVWDl 244 (1331)
.+.+++|+| +++.+|++++.||+|++||+.+++.+..+. +|...|++++ ++ +++.+|++|+.||+|++||+
T Consensus 534 ~v~~l~~~~----~~~~~las~~~Dg~v~lWd~~~~~~~~~~~-~H~~~V~~l~---~~p~~~~~L~Sgs~Dg~v~iWd~ 605 (793)
T PLN00181 534 KLSGICWNS----YIKSQVASSNFEGVVQVWDVARSQLVTEMK-EHEKRVWSID---YSSADPTLLASGSDDGSVKLWSI 605 (793)
T ss_pred ceeeEEecc----CCCCEEEEEeCCCeEEEEECCCCeEEEEec-CCCCCEEEEE---EcCCCCCEEEEEcCCCEEEEEEC
Confidence 788999953 357899999999999999999998888886 8999999998 45 47889999999999999999
Q ss_pred cCCCccccccccceeeeccCcEEEEEechhccCCCcEEEeecCceeEeeeccchh-hhcccCCCCcccccccccccCCCC
Q 000722 245 DHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFK-ELRRIKPVPKLACHSVASWCHPRA 323 (1331)
Q Consensus 245 ~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~-~l~~~~~~~~l~~H~~~V~svafs 323 (1331)
+++..+.. +.. ...|.++.|++ +++.+|++|+.||.|++||+++.+ .+. .+.+|...|+++.|.
T Consensus 606 ~~~~~~~~------~~~-~~~v~~v~~~~--~~g~~latgs~dg~I~iwD~~~~~~~~~------~~~~h~~~V~~v~f~ 670 (793)
T PLN00181 606 NQGVSIGT------IKT-KANICCVQFPS--ESGRSLAFGSADHKVYYYDLRNPKLPLC------TMIGHSKTVSYVRFV 670 (793)
T ss_pred CCCcEEEE------Eec-CCCeEEEEEeC--CCCCEEEEEeCCCeEEEEECCCCCccce------EecCCCCCEEEEEEe
Confidence 98775443 343 35799999976 378999999999999999998754 222 257899999999998
Q ss_pred CCCceeeeeecce--eeeeecCccccccccccccccCCCccccccccceEEEEEEeccCCccEeeecceeEEEEeecCCC
Q 000722 324 PNLDILTCVKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPR 401 (1331)
Q Consensus 324 pdg~lLa~s~Dg~--IWdl~~~~~~~l~~~~~~~~~~~~~~~l~~h~~~~I~~la~sp~~~~lLAtGs~DG~Il~VWDlr 401 (1331)
+...+++++.|++ |||++.... .....++..+.+|.. .++++.|+|+ +.+|++|+.||.| ++|+..
T Consensus 671 ~~~~lvs~s~D~~ikiWd~~~~~~---------~~~~~~l~~~~gh~~-~i~~v~~s~~-~~~lasgs~D~~v-~iw~~~ 738 (793)
T PLN00181 671 DSSTLVSSSTDNTLKLWDLSMSIS---------GINETPLHSFMGHTN-VKNFVGLSVS-DGYIATGSETNEV-FVYHKA 738 (793)
T ss_pred CCCEEEEEECCCEEEEEeCCCCcc---------ccCCcceEEEcCCCC-CeeEEEEcCC-CCEEEEEeCCCEE-EEEECC
Confidence 5555778899986 899874310 001123456777877 8999999995 6789999999998 799965
No 51
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=3.2e-23 Score=230.89 Aligned_cols=251 Identities=16% Similarity=0.227 Sum_probs=197.7
Q ss_pred ccccccCCCcEEEEEeecCCceeEeecCCCceeeeccccceEEeeeccCCcccchhhh--hhhhhhcccccccCCCCccc
Q 000722 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVG--AKLEKLAEGELEHKGKPTEA 81 (1331)
Q Consensus 4 l~~L~gHs~~V~~lafSPdg~~LaSgs~DGtV~VWD~~tg~~i~s~~~~~~~~i~~vs--pdg~~Lasgs~d~~g~~l~~ 81 (1331)
.+++.||...|..+.||||.++|++|+.|..+.+||+.+|.+.+.+..++...+.+++ ||+..++.|+
T Consensus 262 ~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs---------- 331 (519)
T KOG0293|consen 262 KKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGS---------- 331 (519)
T ss_pred eeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecC----------
Confidence 5789999999999999999999999999999999999999999998866434444444 8888888775
Q ss_pred ccCCceeEEeeecchhhHHHHhhhccccccCCcccccccccccCCCCCCCCceEEEEEeecceeEeeeecccCCCCCccc
Q 000722 82 MRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFLDLVTMRGRDIPKQE 161 (1331)
Q Consensus 82 l~gg~V~sVaf~DgtIrvWdl~tg~~l~~~~~~~~~~~~~~V~svafspdg~~lLasgs~d~iIvwDl~t~~~~~i~~~~ 161 (1331)
.|+++..||+..... ..-.+.....|.+++.++||+.+++++.+..+..++..+...+. ..
T Consensus 332 -----------~dr~i~~wdlDgn~~-----~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~---li 392 (519)
T KOG0293|consen 332 -----------PDRTIIMWDLDGNIL-----GNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRG---LI 392 (519)
T ss_pred -----------CCCcEEEecCCcchh-----hcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhc---cc
Confidence 266677777655432 12222223568899999999966666655555577777633221 23
Q ss_pred cccccceeeehhhcccCCCcceEeecCCCceeeeeehhhheeehhhcCCCccchhhhhHhhhccccEEEeecCCCceEEE
Q 000722 162 LDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLIL 241 (1331)
Q Consensus 162 ~h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrV 241 (1331)
....+|++... |.+++++++--.+..|++||++..+.++.+. ||...-.-+.-++--.+..+++|||.|+.|+|
T Consensus 393 se~~~its~~i-----S~d~k~~LvnL~~qei~LWDl~e~~lv~kY~-Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyI 466 (519)
T KOG0293|consen 393 SEEQPITSFSI-----SKDGKLALVNLQDQEIHLWDLEENKLVRKYF-GHKQGHFIIRSCFGGGNDKFIASGSEDSKVYI 466 (519)
T ss_pred cccCceeEEEE-----cCCCcEEEEEcccCeeEEeecchhhHHHHhh-cccccceEEEeccCCCCcceEEecCCCceEEE
Confidence 34678999999 8899999999999999999999999999997 88765444432224456689999999999999
Q ss_pred EeccCCCccccccccceeeeccCcEEEEEechhccCCCcEEEeecCceeEeeeccc
Q 000722 242 WSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVS 297 (1331)
Q Consensus 242 WDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t 297 (1331)
|+..+++.+. ++.||...|+||+|+|. +..+++++|+||+||||....
T Consensus 467 Whr~sgkll~------~LsGHs~~vNcVswNP~--~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 467 WHRISGKLLA------VLSGHSKTVNCVSWNPA--DPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred EEccCCceeE------eecCCcceeeEEecCCC--CHHHhhccCCCCeEEEecCCc
Confidence 9999998655 48999999999999994 888999999999999998653
No 52
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.88 E-value=1.4e-22 Score=230.74 Aligned_cols=246 Identities=14% Similarity=0.201 Sum_probs=205.5
Q ss_pred ccccccCCCcEEEEEeecCCceeEeecCCCceeeeccccceEEeeeccCCcccchhhhhhhhhhcccccccCCCCccccc
Q 000722 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMR 83 (1331)
Q Consensus 4 l~~L~gHs~~V~~lafSPdg~~LaSgs~DGtV~VWD~~tg~~i~s~~~~~~~~i~~vspdg~~Lasgs~d~~g~~l~~l~ 83 (1331)
+++|.||+..|..++|+.+|..++|++.|+.|++||++||+++.+|....
T Consensus 251 lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~------------------------------ 300 (503)
T KOG0282|consen 251 LRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLDK------------------------------ 300 (503)
T ss_pred ehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEecCC------------------------------
Confidence 78999999999999999999999999999999999999999999998331
Q ss_pred CCceeEEeeecchhhHHHHhhhccccccCCcccccccccccCCCCCCCCceEEEEEeecc-eeEeeeecccCCCCCcccc
Q 000722 84 GGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNK-AIFLDLVTMRGRDIPKQEL 162 (1331)
Q Consensus 84 gg~V~sVaf~DgtIrvWdl~tg~~l~~~~~~~~~~~~~~V~svafspdg~~lLasgs~d~-iIvwDl~t~~~~~i~~~~~ 162 (1331)
.++++.|+|++.++|++|+.|+ ++.||+++++ .+.....
T Consensus 301 --------------------------------------~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~k--vvqeYd~ 340 (503)
T KOG0282|consen 301 --------------------------------------VPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGK--VVQEYDR 340 (503)
T ss_pred --------------------------------------CceeeecCCCCCcEEEEecCCCcEEEEeccchH--HHHHHHh
Confidence 2457889999966776666665 4589999976 4556788
Q ss_pred ccccceeeehhhcccCCCcceEeecCCCceeeeeehhhheeehhhcCCCccchhhhhHhhhccccEEEeecCCCceEEEE
Q 000722 163 DNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILW 242 (1331)
Q Consensus 163 h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrVW 242 (1331)
|-+.|..+.|. ++|.++++.++|++++||+++..-.++.+...+....-|+. .+|++.+++.-+.|+.|.++
T Consensus 341 hLg~i~~i~F~-----~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~---~~P~~~~~~aQs~dN~i~if 412 (503)
T KOG0282|consen 341 HLGAILDITFV-----DEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLT---LHPNGKWFAAQSMDNYIAIF 412 (503)
T ss_pred hhhheeeeEEc-----cCCceEeeeccCccEEEEEcCCCccchhhcchhhccCccee---cCCCCCeehhhccCceEEEE
Confidence 89999999994 68999999999999999999988777666545666677776 79999999999999999999
Q ss_pred eccCCCccccccccceeeeccC--cEEEEEechhccCCCcEEEeecCceeEeeeccchhhhcccCCCCcccccccccccC
Q 000722 243 SADHGQDSRELVPKLSLKAHDG--GVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCH 320 (1331)
Q Consensus 243 Dl~tg~~~~~~~~~~~l~gH~~--~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~sv 320 (1331)
.+...-. ......++||.. .-..+.|+| ||.+|++|+.||.+.+||.++.+.+.. +..|...+..+
T Consensus 413 s~~~~~r---~nkkK~feGh~vaGys~~v~fSp---DG~~l~SGdsdG~v~~wdwkt~kl~~~------lkah~~~ci~v 480 (503)
T KOG0282|consen 413 STVPPFR---LNKKKRFEGHSVAGYSCQVDFSP---DGRTLCSGDSDGKVNFWDWKTTKLVSK------LKAHDQPCIGV 480 (503)
T ss_pred ecccccc---cCHhhhhcceeccCceeeEEEcC---CCCeEEeecCCccEEEeechhhhhhhc------cccCCcceEEE
Confidence 8654322 123445788863 456789999 999999999999999999999888776 78899999999
Q ss_pred CCCCCCc--eeeeeecce--eee
Q 000722 321 PRAPNLD--ILTCVKDSH--IWA 339 (1331)
Q Consensus 321 afspdg~--lLa~s~Dg~--IWd 339 (1331)
.|+|... +++||.||. +|+
T Consensus 481 ~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 481 DWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred EecCCCcceeEecccCceeEecC
Confidence 9999854 778999996 675
No 53
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.88 E-value=3.3e-21 Score=219.33 Aligned_cols=335 Identities=16% Similarity=0.229 Sum_probs=229.7
Q ss_pred cccccccCCCcEEEEEeecCCceeEeecCCC--------ceeeeccccceEEeeeccCCcccchhhhhhhhhhccccccc
Q 000722 3 RLKAFRPTNDKIVKIQLHPTHPWLVTADASD--------HVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEH 74 (1331)
Q Consensus 3 ~l~~L~gHs~~V~~lafSPdg~~LaSgs~DG--------tV~VWD~~tg~~i~s~~~~~~~~i~~vspdg~~Lasgs~d~ 74 (1331)
.++.+.||++.|.|++.||+.-.+++|-..| .|+|||..+-..++.+...+ .++ .++++...+.
T Consensus 96 ~Qr~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~g~f~-~GV-------~~vaFsk~~~ 167 (626)
T KOG2106|consen 96 SQRHYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLHVIGFFD-RGV-------TCVAFSKING 167 (626)
T ss_pred hcccccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeecccccceeeeeecccc-ccc-------eeeeecccCC
Confidence 3678899999999999999988898876555 59999977766565554221 122 2233322111
Q ss_pred CCCCcccccCCceeEEeeecchhhHHHHhhhccccccCCcccccccccccCCCCCCCCceEEEEEeecceeEeeeecccC
Q 000722 75 KGKPTEAMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFLDLVTMRG 154 (1331)
Q Consensus 75 ~g~~l~~l~gg~V~sVaf~DgtIrvWdl~tg~~l~~~~~~~~~~~~~~V~svafspdg~~lLasgs~d~iIvwDl~t~~~ 154 (1331)
+..+..+..+ .+..+.+||...+.... .....+..|....|+|.+++++++++.+.+.+|++..+..
T Consensus 168 -G~~l~~vD~s-------~~h~lSVWdWqk~~~~~-----~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l 234 (626)
T KOG2106|consen 168 -GSLLCAVDDS-------NPHMLSVWDWQKKAKLG-----PVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSL 234 (626)
T ss_pred -CceEEEecCC-------CccccchhhchhhhccC-----cceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCce
Confidence 1111111111 46788999988775431 1112244567788999999999999999999998876542
Q ss_pred C-CCCcccc-ccccceeeehhhcccCCCcceEeecCCCceeeeeehhhheeehhhcCCCccchhhhhHhhhccccEEEee
Q 000722 155 R-DIPKQEL-DNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVS 232 (1331)
Q Consensus 155 ~-~i~~~~~-h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~~~v~~~~~gH~~~V~~vawf~~spdg~lLaS 232 (1331)
. ....+.. ..+.|.|++| .++|+ +++|.++|.|.||+..+.+..+... .|.+.|.+++ .-.+|. |+|
T Consensus 235 ~k~~~~fek~ekk~Vl~v~F-----~engd-viTgDS~G~i~Iw~~~~~~~~k~~~-aH~ggv~~L~---~lr~Gt-llS 303 (626)
T KOG2106|consen 235 VKRQGIFEKREKKFVLCVTF-----LENGD-VITGDSGGNILIWSKGTNRISKQVH-AHDGGVFSLC---MLRDGT-LLS 303 (626)
T ss_pred EEEeeccccccceEEEEEEE-----cCCCC-EEeecCCceEEEEeCCCceEEeEee-ecCCceEEEE---EecCcc-Eee
Confidence 2 1112222 2479999999 45564 8899999999999998888877777 9999999997 566664 556
Q ss_pred cCCCceEEEEeccCCCc-----------c---------------------ccccc--cceeeeccCcEEEEEechhccCC
Q 000722 233 GGSDGLLILWSADHGQD-----------S---------------------RELVP--KLSLKAHDGGVVAVELSRVMGGS 278 (1331)
Q Consensus 233 gs~DgtIrVWDl~tg~~-----------~---------------------~~~~~--~~~l~gH~~~V~svafsp~~~dg 278 (1331)
|+.|+.|..||-+-.+. + .++.. .....+|.+..+.++.+| +.
T Consensus 304 GgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hp---s~ 380 (626)
T KOG2106|consen 304 GGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHP---SK 380 (626)
T ss_pred cCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCC---Ch
Confidence 99999999998321100 0 00000 112357888999999999 88
Q ss_pred CcEEEeecCceeEeeeccchhhhcccCCCCcccccccccccCCCCCCCceeeeeecce--eeeeecCccccccccccccc
Q 000722 279 PQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDILTCVKDSH--IWAIEHPTYSALTRPLCELS 356 (1331)
Q Consensus 279 ~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg~lLa~s~Dg~--IWdl~~~~~~~l~~~~~~~~ 356 (1331)
+.+++++.|+.+++|+ ..+...+ .--..++.|+.|+|.|.++.|...|+ |.|..+.
T Consensus 381 ~q~~T~gqdk~v~lW~--~~k~~wt-------~~~~d~~~~~~fhpsg~va~Gt~~G~w~V~d~e~~------------- 438 (626)
T KOG2106|consen 381 NQLLTCGQDKHVRLWN--DHKLEWT-------KIIEDPAECADFHPSGVVAVGTATGRWFVLDTETQ------------- 438 (626)
T ss_pred hheeeccCcceEEEcc--CCceeEE-------EEecCceeEeeccCcceEEEeeccceEEEEecccc-------------
Confidence 9999999999999999 3333222 12234556899999995556777777 4454432
Q ss_pred cCCCccccccccceEEEEEEeccCCccEeeecceeEEEEeecCC
Q 000722 357 SLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDP 400 (1331)
Q Consensus 357 ~~~~~~~l~~h~~~~I~~la~sp~~~~lLAtGs~DG~Il~VWDl 400 (1331)
.+.++...+. +++++.|+| ++.+||.|+.|+.| ++|-+
T Consensus 439 ---~lv~~~~d~~-~ls~v~ysp-~G~~lAvgs~d~~i-yiy~V 476 (626)
T KOG2106|consen 439 ---DLVTIHTDNE-QLSVVRYSP-DGAFLAVGSHDNHI-YIYRV 476 (626)
T ss_pred ---eeEEEEecCC-ceEEEEEcC-CCCEEEEecCCCeE-EEEEE
Confidence 1223344444 899999999 58889999999998 67654
No 54
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.87 E-value=7.8e-22 Score=224.85 Aligned_cols=301 Identities=18% Similarity=0.245 Sum_probs=208.2
Q ss_pred cccccCCCcEEEEEeecCCceeEeecCCCceeeeccccceEEeeeccCCcccchhhhhhhhhhcccccccCCCCcccccC
Q 000722 5 KAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRG 84 (1331)
Q Consensus 5 ~~L~gHs~~V~~lafSPdg~~LaSgs~DGtV~VWD~~tg~~i~s~~~~~~~~i~~vspdg~~Lasgs~d~~g~~l~~l~g 84 (1331)
..|++|+..|.++++.|.|.+|+||+.|.+|++||+...
T Consensus 161 i~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gM----------------------------------------- 199 (641)
T KOG0772|consen 161 IQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGM----------------------------------------- 199 (641)
T ss_pred EeccCCceEEEEeeecCCCceeeeccccceEEEEecccc-----------------------------------------
Confidence 357899999999999999999999999999999998631
Q ss_pred CceeEEeeecchhhHHHHhhhccccccCCcccccccccccCCCCCCCCceEEEEEeecceeEeeeeccc----------C
Q 000722 85 GSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFLDLVTMR----------G 154 (1331)
Q Consensus 85 g~V~sVaf~DgtIrvWdl~tg~~l~~~~~~~~~~~~~~V~svafspdg~~lLasgs~d~iIvwDl~t~~----------~ 154 (1331)
|.+.+-+ ..+.-.....|+++.|++.|..+|++.+.....++|-.... .
T Consensus 200 ---------das~~~f------------r~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI 258 (641)
T KOG0772|consen 200 ---------DASMRSF------------RQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYI 258 (641)
T ss_pred ---------cccchhh------------hccCcccccccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhh
Confidence 1111100 00011113357889999999988888777777677643211 1
Q ss_pred CCCCccccccccceeeehhhcccCCCcceEeecCCCceeeeeehhhhee-ehhh----cCCCccchhhhhHhhhccccEE
Q 000722 155 RDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKL-VRRY----TGGHKGSISCLMTFMASSGEAL 229 (1331)
Q Consensus 155 ~~i~~~~~h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~~~-v~~~----~~gH~~~V~~vawf~~spdg~l 229 (1331)
+.+...++|...++|.+|||. +...+++++.||++||||+...+. ...+ ..+..-.++.++ +++++++
T Consensus 259 ~Dm~nTKGHia~lt~g~whP~----~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~---~nrdg~~ 331 (641)
T KOG0772|consen 259 RDMYNTKGHIAELTCGCWHPD----NKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCA---WNRDGKL 331 (641)
T ss_pred hhhhccCCceeeeeccccccC----cccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeee---cCCCcch
Confidence 234456889999999999773 456799999999999999975432 2222 123445666666 7999999
Q ss_pred EeecCCCceEEEEeccCCCccccccccceeeeccC--cEEEEEechhccCCCcEEEeecCceeEeeeccchh-hhcccCC
Q 000722 230 LVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDG--GVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFK-ELRRIKP 306 (1331)
Q Consensus 230 LaSgs~DgtIrVWDl~tg~~~~~~~~~~~l~gH~~--~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~-~l~~~~~ 306 (1331)
|++|+.||.|.+|+...... +. ..+.-.+|.. .|+||.|++ +|++|++-|.|+++++||++..+ ++.....
T Consensus 332 iAagc~DGSIQ~W~~~~~~v-~p--~~~vk~AH~~g~~Itsi~FS~---dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tg 405 (641)
T KOG0772|consen 332 IAAGCLDGSIQIWDKGSRTV-RP--VMKVKDAHLPGQDITSISFSY---DGNYLLSRGFDDTLKVWDLRQFKKPLNVRTG 405 (641)
T ss_pred hhhcccCCceeeeecCCccc-cc--ceEeeeccCCCCceeEEEecc---ccchhhhccCCCceeeeeccccccchhhhcC
Confidence 99999999999999854321 11 1122367877 899999999 99999999999999999998755 4444322
Q ss_pred CCcccccccccccCCCCCCCcee-eeee------ccee--eeeecCccccccccccccccCCCccccccccceEEEEEEe
Q 000722 307 VPKLACHSVASWCHPRAPNLDIL-TCVK------DSHI--WAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVA 377 (1331)
Q Consensus 307 ~~~l~~H~~~V~svafspdg~lL-a~s~------Dg~I--Wdl~~~~~~~l~~~~~~~~~~~~~~~l~~h~~~~I~~la~ 377 (1331)
+.. ...-+.++|||+.++| +|.. .+++ +|..+. ..+..+..... .|..+.|
T Consensus 406 L~t----~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~---------------d~v~ki~i~~a-Svv~~~W 465 (641)
T KOG0772|consen 406 LPT----PFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTL---------------DTVYKIDISTA-SVVRCLW 465 (641)
T ss_pred CCc----cCCCCccccCCCceEEEecccccCCCCCceEEEEeccce---------------eeEEEecCCCc-eEEEEee
Confidence 211 1233478999999977 4431 1233 443321 11222333334 7889999
Q ss_pred ccCCccEeeecceeEEEEeecCCC
Q 000722 378 HSLQPHLVATGTNVGVIISEFDPR 401 (1331)
Q Consensus 378 sp~~~~lLAtGs~DG~Il~VWDlr 401 (1331)
|| .-+.|..|+.||.+-..||..
T Consensus 466 hp-kLNQi~~gsgdG~~~vyYdp~ 488 (641)
T KOG0772|consen 466 HP-KLNQIFAGSGDGTAHVYYDPN 488 (641)
T ss_pred cc-hhhheeeecCCCceEEEECcc
Confidence 99 688899999999985557754
No 55
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=9.9e-22 Score=209.99 Aligned_cols=240 Identities=17% Similarity=0.262 Sum_probs=192.2
Q ss_pred cccccccccccCCCCCCC-CceEEEEEeeccee-EeeeecccC-CCCC-ccccccccceeeehhhcccCCCcceEeecCC
Q 000722 114 TAVSNVTSGFASPPPSTK-GRHFLVICCVNKAI-FLDLVTMRG-RDIP-KQELDNKSLVCMEFLSRSAVGDVPLVAFGSS 189 (1331)
Q Consensus 114 ~~~~~~~~~V~svafspd-g~~lLasgs~d~iI-vwDl~t~~~-~~i~-~~~~h~~~V~~Vaf~P~s~Spdg~~LasGs~ 189 (1331)
...+| ..+++.++|+|- |. +|++|+.|+.+ +|+...++. .+.. .-.+|...|++++| +|.|++|++||.
T Consensus 9 ~~~gh-~~r~W~~awhp~~g~-ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAw-----sp~g~~La~aSF 81 (312)
T KOG0645|consen 9 KLSGH-KDRVWSVAWHPGKGV-ILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAW-----SPHGRYLASASF 81 (312)
T ss_pred eecCC-CCcEEEEEeccCCce-EEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeee-----cCCCcEEEEeec
Confidence 34455 668999999998 65 99999999988 677663221 1111 12578999999999 789999999999
Q ss_pred Cceeeeeehhh--heeehhhcCCCccchhhhhHhhhccccEEEeecCCCceEEEEeccCCCccccccccceeeeccCcEE
Q 000722 190 DGVIRVLSMIS--WKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVV 267 (1331)
Q Consensus 190 DGtIrlWDl~t--~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrVWDl~tg~~~~~~~~~~~l~gH~~~V~ 267 (1331)
|.++.||.-.. .+++..+. ||...|.|++ ++++|++|++|+.|+.|-||.+..+.. +.....|++|...|.
T Consensus 82 D~t~~Iw~k~~~efecv~~lE-GHEnEVK~Va---ws~sG~~LATCSRDKSVWiWe~deddE---fec~aVL~~HtqDVK 154 (312)
T KOG0645|consen 82 DATVVIWKKEDGEFECVATLE-GHENEVKCVA---WSASGNYLATCSRDKSVWIWEIDEDDE---FECIAVLQEHTQDVK 154 (312)
T ss_pred cceEEEeecCCCceeEEeeee-ccccceeEEE---EcCCCCEEEEeeCCCeEEEEEecCCCc---EEEEeeecccccccc
Confidence 99999998764 47888887 9999999998 699999999999999999999986543 344567899999999
Q ss_pred EEEechhccCCCcEEEeecCceeEeeeccc---hhhhcccCCCCcccccccccccCCCCCCCc-eeeeeecce--eeeee
Q 000722 268 AVELSRVMGGSPQLITIGADKTLAIWDTVS---FKELRRIKPVPKLACHSVASWCHPRAPNLD-ILTCVKDSH--IWAIE 341 (1331)
Q Consensus 268 svafsp~~~dg~~LaSgs~Dg~IrIWDl~t---~~~l~~~~~~~~l~~H~~~V~svafspdg~-lLa~s~Dg~--IWdl~ 341 (1331)
.+.||| ...+|+++|.|.+|++|+-.. ..+.++ +.+|.+.|++++|++.|. +.+|+.|++ ||...
T Consensus 155 ~V~WHP---t~dlL~S~SYDnTIk~~~~~~dddW~c~~t------l~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~ 225 (312)
T KOG0645|consen 155 HVIWHP---TEDLLFSCSYDNTIKVYRDEDDDDWECVQT------LDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLY 225 (312)
T ss_pred EEEEcC---CcceeEEeccCCeEEEEeecCCCCeeEEEE------ecCccceEEEEEecCCCceEEEecCCcceEeeeec
Confidence 999999 789999999999999998763 334444 889999999999999986 567888886 78754
Q ss_pred cCccccccccccccccCCCccccc-cccceEEEEEEeccCCccEeeecceeEEEEeecCCC
Q 000722 342 HPTYSALTRPLCELSSLVPPQVLA-HHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPR 401 (1331)
Q Consensus 342 ~~~~~~l~~~~~~~~~~~~~~~l~-~h~~~~I~~la~sp~~~~lLAtGs~DG~Il~VWDlr 401 (1331)
.. +. .|+. .++.+.|.. + .||+++.|+.| ++|...
T Consensus 226 ~~--------------------~~~~~sr-~~Y~v~W~~--~-~IaS~ggD~~i-~lf~~s 261 (312)
T KOG0645|consen 226 TD--------------------LSGMHSR-ALYDVPWDN--G-VIASGGGDDAI-RLFKES 261 (312)
T ss_pred cC--------------------cchhccc-ceEeeeecc--c-ceEeccCCCEE-EEEEec
Confidence 31 11 2444 799999992 3 59999999998 677643
No 56
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.87 E-value=2.8e-22 Score=216.65 Aligned_cols=247 Identities=19% Similarity=0.292 Sum_probs=198.9
Q ss_pred cccccCCCCCCCCceEEEEEeeccee-EeeeecccCCCC------CccccccccceeeehhhcccCCCcceEeecCCCce
Q 000722 120 TSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDI------PKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGV 192 (1331)
Q Consensus 120 ~~~V~svafspdg~~lLasgs~d~iI-vwDl~t~~~~~i------~~~~~h~~~V~~Vaf~P~s~Spdg~~LasGs~DGt 192 (1331)
.+-+-|..|+|||+ +|++|+-|+.+ +||+.+++.+.- ..+..+.+.|.|+.| +.|...+++|+.||.
T Consensus 213 KSh~EcA~FSPDgq-yLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~F-----SRDsEMlAsGsqDGk 286 (508)
T KOG0275|consen 213 KSHVECARFSPDGQ-YLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISF-----SRDSEMLASGSQDGK 286 (508)
T ss_pred ccchhheeeCCCCc-eEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEee-----cccHHHhhccCcCCc
Confidence 45577888999998 99999999999 999998875422 123456889999999 889999999999999
Q ss_pred eeeeehhhheeehhhcCCCccchhhhhHhhhccccEEEeecCCCceEEEEeccCCCccccccccceeeeccCcEEEEEec
Q 000722 193 IRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELS 272 (1331)
Q Consensus 193 IrlWDl~t~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafs 272 (1331)
|++|.+++|.|++.|..+|+..|+|+. |+.|+..+++++.|.++|+.-+.+|+++++ +.||...|+.+.|.
T Consensus 287 IKvWri~tG~ClRrFdrAHtkGvt~l~---FSrD~SqiLS~sfD~tvRiHGlKSGK~LKE------frGHsSyvn~a~ft 357 (508)
T KOG0275|consen 287 IKVWRIETGQCLRRFDRAHTKGVTCLS---FSRDNSQILSASFDQTVRIHGLKSGKCLKE------FRGHSSYVNEATFT 357 (508)
T ss_pred EEEEEEecchHHHHhhhhhccCeeEEE---EccCcchhhcccccceEEEeccccchhHHH------hcCccccccceEEc
Confidence 999999999999999889999999998 899999999999999999999999998877 69999999999999
Q ss_pred hhccCCCcEEEeecCceeEeeeccchhhhcccCCCCcccccccccccCCCCCCCc--eeeeeecceeeeeecCccccccc
Q 000722 273 RVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLD--ILTCVKDSHIWAIEHPTYSALTR 350 (1331)
Q Consensus 273 p~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg~--lLa~s~Dg~IWdl~~~~~~~l~~ 350 (1331)
+ +|.++++++.||+|++|+..+.+|+.++++.. ....|.++..-|.+. ++.|...++++-++.... ..+
T Consensus 358 ~---dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~----~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQ--vVr 428 (508)
T KOG0275|consen 358 D---DGHHIISASSDGTVKVWHGKTTECLSTFKPLG----TDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQ--VVR 428 (508)
T ss_pred C---CCCeEEEecCCccEEEecCcchhhhhhccCCC----CcccceeEEEcCCCCceEEEEcCCCeEEEEeccce--EEe
Confidence 8 99999999999999999999999999987643 344566666666543 778877777766653210 000
Q ss_pred cccccccCCCccccccccceEEEEEEeccCCccEeeecceeEEEEeecCCCC
Q 000722 351 PLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPRS 402 (1331)
Q Consensus 351 ~~~~~~~~~~~~~l~~h~~~~I~~la~sp~~~~lLAtGs~DG~Il~VWDlr~ 402 (1331)
.+. .-...++ ...+...+| .+..+.+.+.|+++ +.|.+.+
T Consensus 429 ---sfs------SGkREgG-dFi~~~lSp-kGewiYcigED~vl-YCF~~~s 468 (508)
T KOG0275|consen 429 ---SFS------SGKREGG-DFINAILSP-KGEWIYCIGEDGVL-YCFSVLS 468 (508)
T ss_pred ---eec------cCCccCC-ceEEEEecC-CCcEEEEEccCcEE-EEEEeec
Confidence 000 0112233 466777899 57778888889886 6776543
No 57
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.87 E-value=2.4e-21 Score=215.58 Aligned_cols=237 Identities=23% Similarity=0.300 Sum_probs=191.3
Q ss_pred cccccCCCCCCCCceEEEEEeeccee-EeeeecccCCCCCccccccccceeeehhhcccCCCcceEeecCCCceeeeeeh
Q 000722 120 TSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSM 198 (1331)
Q Consensus 120 ~~~V~svafspdg~~lLasgs~d~iI-vwDl~t~~~~~i~~~~~h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl 198 (1331)
...|++++|+|+++ ++++++.++.+ +|+..+++ .......|...+.++.| +++++++++++.||.|++||+
T Consensus 9 ~~~i~~~~~~~~~~-~l~~~~~~g~i~i~~~~~~~--~~~~~~~~~~~i~~~~~-----~~~~~~l~~~~~~~~i~i~~~ 80 (289)
T cd00200 9 TGGVTCVAFSPDGK-LLATGSGDGTIKVWDLETGE--LLRTLKGHTGPVRDVAA-----SADGTYLASGSSDKTIRLWDL 80 (289)
T ss_pred CCCEEEEEEcCCCC-EEEEeecCcEEEEEEeeCCC--cEEEEecCCcceeEEEE-----CCCCCEEEEEcCCCeEEEEEc
Confidence 67899999999987 77777766655 89988754 33446677888889999 667889999999999999999
Q ss_pred hhheeehhhcCCCccchhhhhHhhhccccEEEeecCCCceEEEEeccCCCccccccccceeeeccCcEEEEEechhccCC
Q 000722 199 ISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGS 278 (1331)
Q Consensus 199 ~t~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg 278 (1331)
.+++.+..+. .|...+.++. +++++.++++++.|+.|++||+.+++... .+..|...|.++.|+| ++
T Consensus 81 ~~~~~~~~~~-~~~~~i~~~~---~~~~~~~~~~~~~~~~i~~~~~~~~~~~~------~~~~~~~~i~~~~~~~---~~ 147 (289)
T cd00200 81 ETGECVRTLT-GHTSYVSSVA---FSPDGRILSSSSRDKTIKVWDVETGKCLT------TLRGHTDWVNSVAFSP---DG 147 (289)
T ss_pred CcccceEEEe-ccCCcEEEEE---EcCCCCEEEEecCCCeEEEEECCCcEEEE------EeccCCCcEEEEEEcC---cC
Confidence 9887777776 8888999998 57778899998889999999998766443 3567889999999999 67
Q ss_pred CcEEEeecCceeEeeeccchhhhcccCCCCcccccccccccCCCCCCCc-eeeeeecce--eeeeecCcccccccccccc
Q 000722 279 PQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLD-ILTCVKDSH--IWAIEHPTYSALTRPLCEL 355 (1331)
Q Consensus 279 ~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg~-lLa~s~Dg~--IWdl~~~~~~~l~~~~~~~ 355 (1331)
.++++++.|+.|++||+++++.+.. +..|...+.++.|+|++. +++++.|+. +||++..
T Consensus 148 ~~l~~~~~~~~i~i~d~~~~~~~~~------~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~------------ 209 (289)
T cd00200 148 TFVASSSQDGTIKLWDLRTGKCVAT------LTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTG------------ 209 (289)
T ss_pred CEEEEEcCCCcEEEEEcccccccee------EecCccccceEEECCCcCEEEEecCCCcEEEEECCCC------------
Confidence 8888888899999999998776655 457788899999999996 556777775 7988753
Q ss_pred ccCCCccccccccceEEEEEEeccCCccEeeecceeEEEEeecCCC
Q 000722 356 SSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPR 401 (1331)
Q Consensus 356 ~~~~~~~~l~~h~~~~I~~la~sp~~~~lLAtGs~DG~Il~VWDlr 401 (1331)
.....+..|.. .+.++.|+|+ +.++++++.+|.+ ++||+.
T Consensus 210 ---~~~~~~~~~~~-~i~~~~~~~~-~~~~~~~~~~~~i-~i~~~~ 249 (289)
T cd00200 210 ---KCLGTLRGHEN-GVNSVAFSPD-GYLLASGSEDGTI-RVWDLR 249 (289)
T ss_pred ---ceecchhhcCC-ceEEEEEcCC-CcEEEEEcCCCcE-EEEEcC
Confidence 12333445655 8999999995 7878888889998 899975
No 58
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.87 E-value=4.2e-22 Score=212.14 Aligned_cols=286 Identities=13% Similarity=0.103 Sum_probs=215.2
Q ss_pred cccccCCCcEEEEEeecCCceeEeecCCCceeeeccccceEEeeeccCCcccchhhh--hhhhhhcccccccCCCCcccc
Q 000722 5 KAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVG--AKLEKLAEGELEHKGKPTEAM 82 (1331)
Q Consensus 5 ~~L~gHs~~V~~lafSPdg~~LaSgs~DGtV~VWD~~tg~~i~s~~~~~~~~i~~vs--pdg~~Lasgs~d~~g~~l~~l 82 (1331)
..|+||..+++-+.|+.+|.+|.+|+.|.++.||=...|+.+.++. +|...+++++ .+.+.+.+++
T Consensus 4 i~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~-GHtGavW~~Did~~s~~liTGS----------- 71 (327)
T KOG0643|consen 4 ILLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYD-GHTGAVWCCDIDWDSKHLITGS----------- 71 (327)
T ss_pred cccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeec-CCCceEEEEEecCCcceeeecc-----------
Confidence 4589999999999999999999999999999999998999999999 6778888776 5556666654
Q ss_pred cCCceeEEeeecchhhHHHHhhhccccccCCcccccccccccCCCCCCCCceEEEEEeec-----cee-Eeeeeccc---
Q 000722 83 RGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVN-----KAI-FLDLVTMR--- 153 (1331)
Q Consensus 83 ~gg~V~sVaf~DgtIrvWdl~tg~~l~~~~~~~~~~~~~~V~svafspdg~~lLasgs~d-----~iI-vwDl~t~~--- 153 (1331)
.|.++++||+.+|+++. .-.....|+.+.|+++|. +++.+.++ +.+ ++|++...
T Consensus 72 ----------AD~t~kLWDv~tGk~la------~~k~~~~Vk~~~F~~~gn-~~l~~tD~~mg~~~~v~~fdi~~~~~~~ 134 (327)
T KOG0643|consen 72 ----------ADQTAKLWDVETGKQLA------TWKTNSPVKRVDFSFGGN-LILASTDKQMGYTCFVSVFDIRDDSSDI 134 (327)
T ss_pred ----------ccceeEEEEcCCCcEEE------EeecCCeeEEEeeccCCc-EEEEEehhhcCcceEEEEEEccCChhhh
Confidence 58899999999998763 122256788999999998 44444433 233 55766321
Q ss_pred -C-CCCCccccccccceeeehhhcccCCCcceEeecCCCceeeeeehhhheeehhhcCCCccchhhhhHhhhccccEEEe
Q 000722 154 -G-RDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLV 231 (1331)
Q Consensus 154 -~-~~i~~~~~h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~~~v~~~~~gH~~~V~~vawf~~spdg~lLa 231 (1331)
. ..+.....+.+.++.+-| +|-+++|++|..||.|.+||.++++........|...|+.++ ++++..+|+
T Consensus 135 ~s~ep~~kI~t~~skit~a~W-----g~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q---~s~d~T~Fi 206 (327)
T KOG0643|consen 135 DSEEPYLKIPTPDSKITSALW-----GPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQ---FSRDRTYFI 206 (327)
T ss_pred cccCceEEecCCccceeeeee-----cccCCEEEEecCCCcEEEEEcccCceeeechhhhcccccccc---ccCCcceEE
Confidence 1 123334556788999999 778999999999999999999998554444348999999998 899999999
Q ss_pred ecCCCceEEEEeccCCCccccccccceeeeccCcEEEEEechhccCCCcEEEeecCce--eEeeeccchhhhccc-----
Q 000722 232 SGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKT--LAIWDTVSFKELRRI----- 304 (1331)
Q Consensus 232 Sgs~DgtIrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~--IrIWDl~t~~~l~~~----- 304 (1331)
++|.|.+-++||+.+-..++++ ..+.+|++.+++| ....++.|+.... |.-=+.+.|+--.+|
T Consensus 207 T~s~Dttakl~D~~tl~v~Kty-------~te~PvN~aaisP---~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~ 276 (327)
T KOG0643|consen 207 TGSKDTTAKLVDVRTLEVLKTY-------TTERPVNTAAISP---LLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIF 276 (327)
T ss_pred ecccCccceeeeccceeeEEEe-------eecccccceeccc---ccceEEecCCceeeeeeeecccccchhhhHHHHHH
Confidence 9999999999999998776652 3567899999999 4555555543221 111111222111111
Q ss_pred -CCCCcccccccccccCCCCCCCcee-eeeeccee
Q 000722 305 -KPVPKLACHSVASWCHPRAPNLDIL-TCVKDSHI 337 (1331)
Q Consensus 305 -~~~~~l~~H~~~V~svafspdg~lL-a~s~Dg~I 337 (1331)
+.+....+|-++|.+++|||+|+.. +||+||.|
T Consensus 277 eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~V 311 (327)
T KOG0643|consen 277 EEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYV 311 (327)
T ss_pred HHHhccccccccCcceeEECCCCcccccCCCCceE
Confidence 1223478999999999999999954 78899963
No 59
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=1.6e-21 Score=210.62 Aligned_cols=329 Identities=15% Similarity=0.197 Sum_probs=227.7
Q ss_pred ccccccCCCcEEEEEeecCCceeEeecCCCceeeeccccceEEeeeccCCcccchhhh--hhhhhhcccccccCCCCccc
Q 000722 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVG--AKLEKLAEGELEHKGKPTEA 81 (1331)
Q Consensus 4 l~~L~gHs~~V~~lafSPdg~~LaSgs~DGtV~VWD~~tg~~i~s~~~~~~~~i~~vs--pdg~~Lasgs~d~~g~~l~~ 81 (1331)
++.|.||.+.|+.++-....+.+.+++.|.+.+||.+++|.|+.++. +|...+.++. +.+..+++++
T Consensus 141 vre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~-GH~GSVNsikfh~s~~L~lTaS---------- 209 (481)
T KOG0300|consen 141 VRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYT-GHTGSVNSIKFHNSGLLLLTAS---------- 209 (481)
T ss_pred hhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeec-ccccceeeEEeccccceEEEcc----------
Confidence 57899999999999999999999999999999999999999999998 4444444443 3333333222
Q ss_pred ccCCceeEEeeecchhhHHHHhhhccccccCCcccccccccccCCCCCCCCceEEEEEeecceeEeeeecccCCCCCccc
Q 000722 82 MRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFLDLVTMRGRDIPKQE 161 (1331)
Q Consensus 82 l~gg~V~sVaf~DgtIrvWdl~tg~~l~~~~~~~~~~~~~~V~svafspdg~~lLasgs~d~iIvwDl~t~~~~~i~~~~ 161 (1331)
.|++-.||...-.-.. ..+.....+.+. --+.-+ |...-... +...-|-.+-+ ..+..+.
T Consensus 210 -----------GD~taHIW~~av~~~v--P~~~a~~~hSsE-eE~e~s-De~~~d~d----~~~~sD~~tiR-vPl~~lt 269 (481)
T KOG0300|consen 210 -----------GDETAHIWKAAVNWEV--PSNNAPSDHSSE-EEEEHS-DEHNRDTD----SSEKSDGHTIR-VPLMRLT 269 (481)
T ss_pred -----------CCcchHHHHHhhcCcC--CCCCCCCCCCch-hhhhcc-cccccccc----cccccCCceee-eeeeeee
Confidence 5888999985432110 000111110000 000000 00000000 00011111111 1344567
Q ss_pred cccccceeeehhhcccCCCcceEeecCCCceeeeeehhhheeehhhcCCCccchhhhhHhhhccccEEEeecCCCceEEE
Q 000722 162 LDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLIL 241 (1331)
Q Consensus 162 ~h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrV 241 (1331)
+|...|.|..|+ ..|+.+++++.|.+-.+||+++++.+..+. ||....+.++ -+|..+++++.+.|.+.++
T Consensus 270 gH~~vV~a~dWL-----~gg~Q~vTaSWDRTAnlwDVEtge~v~~Lt-GHd~ELtHcs---tHptQrLVvTsSrDtTFRL 340 (481)
T KOG0300|consen 270 GHRAVVSACDWL-----AGGQQMVTASWDRTANLWDVETGEVVNILT-GHDSELTHCS---THPTQRLVVTSSRDTTFRL 340 (481)
T ss_pred ccccceEehhhh-----cCcceeeeeeccccceeeeeccCceecccc-Ccchhccccc---cCCcceEEEEeccCceeEe
Confidence 899999999995 468999999999999999999999999998 9999999887 7899999999999999999
Q ss_pred EeccCCCccccccccceeeeccCcEEEEEechhccCCCcEEEeecCceeEeeeccchh-hhcccCCCCcccccccccccC
Q 000722 242 WSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFK-ELRRIKPVPKLACHSVASWCH 320 (1331)
Q Consensus 242 WDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~-~l~~~~~~~~l~~H~~~V~sv 320 (1331)
||++.. + .....|+||.+.|+++.|.. +..+++|++|.+|+|||+++.. ++.+ + .-...+..+
T Consensus 341 WDFRea--I---~sV~VFQGHtdtVTS~vF~~----dd~vVSgSDDrTvKvWdLrNMRsplAT------I-RtdS~~NRv 404 (481)
T KOG0300|consen 341 WDFREA--I---QSVAVFQGHTDTVTSVVFNT----DDRVVSGSDDRTVKVWDLRNMRSPLAT------I-RTDSPANRV 404 (481)
T ss_pred ccchhh--c---ceeeeecccccceeEEEEec----CCceeecCCCceEEEeeeccccCccee------e-ecCCcccee
Confidence 999843 2 23556899999999999986 5789999999999999998754 2322 2 223456677
Q ss_pred CCCCCCceeeeeecce---eeeeecCccccccccccccccCCCccccccccceEEEEEEeccCCc-cEeeecceeEEEEe
Q 000722 321 PRAPNLDILTCVKDSH---IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQP-HLVATGTNVGVIIS 396 (1331)
Q Consensus 321 afspdg~lLa~s~Dg~---IWdl~~~~~~~l~~~~~~~~~~~~~~~l~~h~~~~I~~la~sp~~~-~lLAtGs~DG~Il~ 396 (1331)
+.+..+.+|+--.|++ +||++...... .|...-.+|.. .|.|++|..+.+ .-|++++.|..+ .
T Consensus 405 avs~g~~iIAiPhDNRqvRlfDlnG~RlaR-----------lPrtsRqgHrR-MV~c~AW~eehp~cnLftcGFDR~v-~ 471 (481)
T KOG0300|consen 405 AVSKGHPIIAIPHDNRQVRLFDLNGNRLAR-----------LPRTSRQGHRR-MVTCCAWLEEHPACNLFTCGFDRMV-A 471 (481)
T ss_pred EeecCCceEEeccCCceEEEEecCCCcccc-----------CCcccccccce-eeeeeeccccCccccccccccccee-e
Confidence 8888888998888874 78887432211 11223346666 899999986422 336777778887 4
Q ss_pred ecCCC
Q 000722 397 EFDPR 401 (1331)
Q Consensus 397 VWDlr 401 (1331)
-|++.
T Consensus 472 gW~in 476 (481)
T KOG0300|consen 472 GWKIN 476 (481)
T ss_pred eeEec
Confidence 78865
No 60
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.87 E-value=1e-21 Score=212.06 Aligned_cols=312 Identities=14% Similarity=0.201 Sum_probs=222.5
Q ss_pred ccccCCCcEEEEEeecCCceeEeecCCCceeeeccccceEEeeeccCCcccchhhhhhhhhhcccccccCCCCcccccCC
Q 000722 6 AFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRGG 85 (1331)
Q Consensus 6 ~L~gHs~~V~~lafSPdg~~LaSgs~DGtV~VWD~~tg~~i~s~~~~~~~~i~~vspdg~~Lasgs~d~~g~~l~~l~gg 85 (1331)
.+..|+..+.+.+|+|||.+++||+.|-.|+|.|++..- -++ . .+.+..+..+
T Consensus 107 ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildverml-aks-~-------------~~em~~~~~q------------ 159 (430)
T KOG0640|consen 107 YLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERML-AKS-K-------------PKEMISGDTQ------------ 159 (430)
T ss_pred EEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhh-hhc-c-------------hhhhccCCcc------------
Confidence 467899999999999999999999999999999987310 000 0 0011111100
Q ss_pred ceeEEeeecchhhHHHHhhhccccccCCcccccccccccCCCCCCCCceEEEEEeeccee-EeeeecccCCCCCcccccc
Q 000722 86 SVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQELDN 164 (1331)
Q Consensus 86 ~V~sVaf~DgtIrvWdl~tg~~l~~~~~~~~~~~~~~V~svafspdg~~lLasgs~d~iI-vwDl~t~~~~~i~~~~~h~ 164 (1331)
..+..+.++..| ...|+++.|+|... +|++|+.|+.+ ++|+.....+.-.......
T Consensus 160 ---------------------a~hPvIRTlYDH-~devn~l~FHPre~-ILiS~srD~tvKlFDfsK~saKrA~K~~qd~ 216 (430)
T KOG0640|consen 160 ---------------------ARHPVIRTLYDH-VDEVNDLDFHPRET-ILISGSRDNTVKLFDFSKTSAKRAFKVFQDT 216 (430)
T ss_pred ---------------------cCCceEeehhhc-cCcccceeecchhh-eEEeccCCCeEEEEecccHHHHHHHHHhhcc
Confidence 001112334444 67899999999886 99999999998 6688653332222223345
Q ss_pred ccceeeehhhcccCCCcceEeecCCCceeeeeehhhheeehhh--cCCCccchhhhhHhhhccccEEEeecCCCceEEEE
Q 000722 165 KSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRY--TGGHKGSISCLMTFMASSGEALLVSGGSDGLLILW 242 (1331)
Q Consensus 165 ~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~~~v~~~--~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrVW 242 (1331)
..|+|+.| +|.|.+|+.|.+-.++|+||+.+.+|...- ..+|++.|+++. +++.+++.++||.||.|++|
T Consensus 217 ~~vrsiSf-----HPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~---Ys~t~~lYvTaSkDG~Iklw 288 (430)
T KOG0640|consen 217 EPVRSISF-----HPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVR---YSSTGSLYVTASKDGAIKLW 288 (430)
T ss_pred ceeeeEee-----cCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEE---ecCCccEEEEeccCCcEEee
Confidence 78999999 568999999999999999999998876543 347999999998 89999999999999999999
Q ss_pred eccCCCccccccccceeeeccC-cEEEEEechhccCCCcEEEeecCceeEeeeccchhhhcccCCCCcccccccccccCC
Q 000722 243 SADHGQDSRELVPKLSLKAHDG-GVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHP 321 (1331)
Q Consensus 243 Dl~tg~~~~~~~~~~~l~gH~~-~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~sva 321 (1331)
|--+++|+.++ -..|.+ .|++..|.. ++++|++.|.|..+++|.+.+++++.+..... ..+...--+...
T Consensus 289 DGVS~rCv~t~-----~~AH~gsevcSa~Ftk---n~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg-~tgrq~~rtqAv 359 (430)
T KOG0640|consen 289 DGVSNRCVRTI-----GNAHGGSEVCSAVFTK---NGKYILSSGKDSTVKLWEISTGRMLKEYTGAG-TTGRQKHRTQAV 359 (430)
T ss_pred ccccHHHHHHH-----HhhcCCceeeeEEEcc---CCeEEeecCCcceeeeeeecCCceEEEEecCC-cccchhhhhhhh
Confidence 99998888764 255654 599999998 89999999999999999999999887753321 111111122344
Q ss_pred CCCCCceeeeeecc--e--eeeeecCccccccccccccccCCCccccccccceEEEEEEeccCCccEeeecceeEEEEee
Q 000722 322 RAPNLDILTCVKDS--H--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISE 397 (1331)
Q Consensus 322 fspdg~lLa~s~Dg--~--IWdl~~~~~~~l~~~~~~~~~~~~~~~l~~h~~~~I~~la~sp~~~~lLAtGs~DG~Il~V 397 (1331)
|+....++..-.+. . -||.++.... .+ .--+|++ .+.++..||..+ .+.++++|-.+ |.
T Consensus 360 FNhtEdyVl~pDEas~slcsWdaRtadr~-------------~l-~slgHn~-a~R~i~HSP~~p-~FmTcsdD~ra-RF 422 (430)
T KOG0640|consen 360 FNHTEDYVLFPDEASNSLCSWDARTADRV-------------AL-LSLGHNG-AVRWIVHSPVEP-AFMTCSDDFRA-RF 422 (430)
T ss_pred hcCccceEEccccccCceeeccccchhhh-------------hh-cccCCCC-CceEEEeCCCCC-ceeeeccccee-ee
Confidence 55544444322111 1 4888764211 01 1125666 899999999644 58999999998 89
Q ss_pred cCCC
Q 000722 398 FDPR 401 (1331)
Q Consensus 398 WDlr 401 (1331)
|--+
T Consensus 423 Wyrr 426 (430)
T KOG0640|consen 423 WYRR 426 (430)
T ss_pred eeec
Confidence 9643
No 61
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.86 E-value=2.1e-21 Score=228.53 Aligned_cols=277 Identities=15% Similarity=0.238 Sum_probs=208.5
Q ss_pred cccccCCCcEEEEEeecCCceeEeecCCCceeeeccccceEEeeeccCCcccchhhhhhhhhhcccccccCCCCcccccC
Q 000722 5 KAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRG 84 (1331)
Q Consensus 5 ~~L~gHs~~V~~lafSPdg~~LaSgs~DGtV~VWD~~tg~~i~s~~~~~~~~i~~vspdg~~Lasgs~d~~g~~l~~l~g 84 (1331)
+.+.||+..|..+++.+. .++++++.||++++|+-..++.+......
T Consensus 8 ~~l~gH~~DVr~v~~~~~-~~i~s~sRd~t~~vw~~~~~~~l~~~~~~-------------------------------- 54 (745)
T KOG0301|consen 8 HELEGHKSDVRAVAVTDG-VCIISGSRDGTVKVWAKKGKQYLETHAFE-------------------------------- 54 (745)
T ss_pred EEeccCccchheeEecCC-eEEeecCCCCceeeeeccCcccccceecc--------------------------------
Confidence 578999999999987764 58999999999999996544333211100
Q ss_pred CceeEEeeecchhhHHHHhhhccccccCCccccccccccc-CCCCCCCCceEEEEEeeccee-EeeeecccCCCCCcccc
Q 000722 85 GSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFA-SPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQEL 162 (1331)
Q Consensus 85 g~V~sVaf~DgtIrvWdl~tg~~l~~~~~~~~~~~~~~V~-svafspdg~~lLasgs~d~iI-vwDl~t~~~~~i~~~~~ 162 (1331)
++ ...|. +++|-+..+..+++|+.|..+ +|...+. ..+.++.+
T Consensus 55 --------------------------------~~-~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~--~P~~~Lkg 99 (745)
T KOG0301|consen 55 --------------------------------GP-KGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQA--EPLYTLKG 99 (745)
T ss_pred --------------------------------cC-cceeeccceeccccCcceEeecccceEEEEecCCC--Cchhhhhc
Confidence 00 11111 244444233357788877766 7766653 35677899
Q ss_pred ccccceeeehhhcccCCCcceEeecCCCceeeeeehhhheeehhhcCCCccchhhhhHhhhccccEEEeecCCCceEEEE
Q 000722 163 DNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILW 242 (1331)
Q Consensus 163 h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrVW 242 (1331)
|...|.|+.. ..++. +++||.|.++++|-.. ++...+. +|+..|+++. .-|++ .++|||.|.+|++|
T Consensus 100 H~snVC~ls~-----~~~~~-~iSgSWD~TakvW~~~--~l~~~l~-gH~asVWAv~---~l~e~-~~vTgsaDKtIklW 166 (745)
T KOG0301|consen 100 HKSNVCSLSI-----GEDGT-LISGSWDSTAKVWRIG--ELVYSLQ-GHTASVWAVA---SLPEN-TYVTGSADKTIKLW 166 (745)
T ss_pred cccceeeeec-----CCcCc-eEecccccceEEecch--hhhcccC-Ccchheeeee---ecCCC-cEEeccCcceeeec
Confidence 9999999997 34455 9999999999999754 5555565 9999999997 33444 89999999999999
Q ss_pred eccCCCccccccccceeeeccCcEEEEEechhccCCCcEEEeecCceeEeeeccchhhhcccCCCCcccccccccccCC-
Q 000722 243 SADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHP- 321 (1331)
Q Consensus 243 Dl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~sva- 321 (1331)
.- ++.++ ++.+|.+.|.++++-+ ...|+|++.||.|++|++ +|.++.+ +.+|++.|+++.
T Consensus 167 k~--~~~l~------tf~gHtD~VRgL~vl~----~~~flScsNDg~Ir~w~~-~ge~l~~------~~ghtn~vYsis~ 227 (745)
T KOG0301|consen 167 KG--GTLLK------TFSGHTDCVRGLAVLD----DSHFLSCSNDGSIRLWDL-DGEVLLE------MHGHTNFVYSISM 227 (745)
T ss_pred cC--Cchhh------hhccchhheeeeEEec----CCCeEeecCCceEEEEec-cCceeee------eeccceEEEEEEe
Confidence 75 44444 4799999999999986 568999999999999999 6777766 789999999999
Q ss_pred CCCCCceeeeeecce--eeeeecCccccccccccccccCCCccccccccceEEEEEEeccCCccEeeecceeEEEEeecC
Q 000722 322 RAPNLDILTCVKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFD 399 (1331)
Q Consensus 322 fspdg~lLa~s~Dg~--IWdl~~~~~~~l~~~~~~~~~~~~~~~l~~h~~~~I~~la~sp~~~~lLAtGs~DG~Il~VWD 399 (1331)
..+++.+++||+|++ ||+... +.+.+..... .||++.+-+ ++. |++|+.||.| |||.
T Consensus 228 ~~~~~~Ivs~gEDrtlriW~~~e-----------------~~q~I~lPtt-siWsa~~L~-NgD-Ivvg~SDG~V-rVfT 286 (745)
T KOG0301|consen 228 ALSDGLIVSTGEDRTLRIWKKDE-----------------CVQVITLPTT-SIWSAKVLL-NGD-IVVGGSDGRV-RVFT 286 (745)
T ss_pred cCCCCeEEEecCCceEEEeecCc-----------------eEEEEecCcc-ceEEEEEee-CCC-EEEeccCceE-EEEE
Confidence 556666789999996 787652 2344444444 799999887 466 8999999998 9998
Q ss_pred CCC
Q 000722 400 PRS 402 (1331)
Q Consensus 400 lr~ 402 (1331)
..+
T Consensus 287 ~~k 289 (745)
T KOG0301|consen 287 VDK 289 (745)
T ss_pred ecc
Confidence 653
No 62
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.86 E-value=2.3e-21 Score=237.44 Aligned_cols=280 Identities=21% Similarity=0.322 Sum_probs=224.2
Q ss_pred ccc-CCCcEEEEEeecCCceeEeecCCCceeeeccccceEEee-eccCCcccchhhhhhhhhhcccccccCCCCcccccC
Q 000722 7 FRP-TNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYE-LKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRG 84 (1331)
Q Consensus 7 L~g-Hs~~V~~lafSPdg~~LaSgs~DGtV~VWD~~tg~~i~s-~~~~~~~~i~~vspdg~~Lasgs~d~~g~~l~~l~g 84 (1331)
+.+ |...|.|..|+ +.++++++.|++|++||..++..+.. +. +| .
T Consensus 203 ~~~~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~-GH------------------------------~ 249 (537)
T KOG0274|consen 203 LLGTDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLV-GH------------------------------F 249 (537)
T ss_pred ecccCcchhhhheee--cCeEEecCCCceeEEeecccceEEEeecc-CC------------------------------C
Confidence 444 66789999999 56899999999999999999888877 65 32 1
Q ss_pred CceeEEeeecchhhHHHHhhhccccccCCcccccccccccCCCCCCCCceEEEEEeeccee-EeeeecccCCCCCccccc
Q 000722 85 GSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQELD 163 (1331)
Q Consensus 85 g~V~sVaf~DgtIrvWdl~tg~~l~~~~~~~~~~~~~~V~svafspdg~~lLasgs~d~iI-vwDl~t~~~~~i~~~~~h 163 (1331)
+.| ++++|.. +..++++|+.|..+ +||..++. +...+.+|
T Consensus 250 g~V------------------------------------~~l~~~~-~~~~lvsgS~D~t~rvWd~~sg~--C~~~l~gh 290 (537)
T KOG0274|consen 250 GGV------------------------------------WGLAFPS-GGDKLVSGSTDKTERVWDCSTGE--CTHSLQGH 290 (537)
T ss_pred CCc------------------------------------eeEEEec-CCCEEEEEecCCcEEeEecCCCc--EEEEecCC
Confidence 333 3444444 33499999988877 89988865 56678899
Q ss_pred cccceeeehhhcccCCCcceEeecCCCceeeeeehhhheeehhhcCCCccchhhhhHhhhccccEEEeecCCCceEEEEe
Q 000722 164 NKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWS 243 (1331)
Q Consensus 164 ~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrVWD 243 (1331)
...|.|+.. ...++++|+.|.+|++|++.++.++..+. +|...|.++. . ++.++++|+.|++|+|||
T Consensus 291 ~stv~~~~~-------~~~~~~sgs~D~tVkVW~v~n~~~l~l~~-~h~~~V~~v~---~--~~~~lvsgs~d~~v~VW~ 357 (537)
T KOG0274|consen 291 TSSVRCLTI-------DPFLLVSGSRDNTVKVWDVTNGACLNLLR-GHTGPVNCVQ---L--DEPLLVSGSYDGTVKVWD 357 (537)
T ss_pred CceEEEEEc-------cCceEeeccCCceEEEEeccCcceEEEec-cccccEEEEE---e--cCCEEEEEecCceEEEEE
Confidence 999999999 56688899999999999999999999987 7999999997 3 488999999999999999
Q ss_pred ccCCCccccccccceeeeccCcEEEEEechhccCCCcEEEeecCceeEeeeccch-hhhcccCCCCcccccccccccCCC
Q 000722 244 ADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSF-KELRRIKPVPKLACHSVASWCHPR 322 (1331)
Q Consensus 244 l~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~-~~l~~~~~~~~l~~H~~~V~svaf 322 (1331)
+.++++++. +.+|...|.++.+.. . .++++|+.|++|++||+++. +|+.+ +.+|..-|..+.+
T Consensus 358 ~~~~~cl~s------l~gH~~~V~sl~~~~---~-~~~~Sgs~D~~IkvWdl~~~~~c~~t------l~~h~~~v~~l~~ 421 (537)
T KOG0274|consen 358 PRTGKCLKS------LSGHTGRVYSLIVDS---E-NRLLSGSLDTTIKVWDLRTKRKCIHT------LQGHTSLVSSLLL 421 (537)
T ss_pred hhhceeeee------ecCCcceEEEEEecC---c-ceEEeeeeccceEeecCCchhhhhhh------hcCCccccccccc
Confidence 999887665 799999999998865 2 89999999999999999999 77776 7888888765554
Q ss_pred CCCCceeeeeecce--eeeeecCccccccccccccccCCCcccccc-ccceEEEEEEeccCCccEeeecceeEEEEeecC
Q 000722 323 APNLDILTCVKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAH-HKKLRVYCMVAHSLQPHLVATGTNVGVIISEFD 399 (1331)
Q Consensus 323 spdg~lLa~s~Dg~--IWdl~~~~~~~l~~~~~~~~~~~~~~~l~~-h~~~~I~~la~sp~~~~lLAtGs~DG~Il~VWD 399 (1331)
.. ..+++++.|++ +||..... +..++.. |.. .|+++.+. ...+++++.||.+ ++||
T Consensus 422 ~~-~~Lvs~~aD~~Ik~WD~~~~~---------------~~~~~~~~~~~-~v~~l~~~---~~~il~s~~~~~~-~l~d 480 (537)
T KOG0274|consen 422 RD-NFLVSSSADGTIKLWDAEEGE---------------CLRTLEGRHVG-GVSALALG---KEEILCSSDDGSV-KLWD 480 (537)
T ss_pred cc-ceeEeccccccEEEeecccCc---------------eeeeeccCCcc-cEEEeecC---cceEEEEecCCee-EEEe
Confidence 32 23668888985 89988652 3444555 334 78888876 2358999999998 8999
Q ss_pred CCCCCCCCC
Q 000722 400 PRSLPAVAP 408 (1331)
Q Consensus 400 lr~~p~i~~ 408 (1331)
++.......
T Consensus 481 l~~~~~~~~ 489 (537)
T KOG0274|consen 481 LRSGTLIRT 489 (537)
T ss_pred cccCchhhh
Confidence 987655543
No 63
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.86 E-value=9.6e-22 Score=207.26 Aligned_cols=281 Identities=12% Similarity=0.129 Sum_probs=223.5
Q ss_pred ccccCCCcEEEEEeec---CCceeEeecCCCceeeeccccceEEeeeccCCcccchhhhhh--hhhhcccccccCCCCcc
Q 000722 6 AFRPTNDKIVKIQLHP---THPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAK--LEKLAEGELEHKGKPTE 80 (1331)
Q Consensus 6 ~L~gHs~~V~~lafSP---dg~~LaSgs~DGtV~VWD~~tg~~i~s~~~~~~~~i~~vspd--g~~Lasgs~d~~g~~l~ 80 (1331)
+-.||+.+|..++||| +|-+|++++.||.-.+-+-+||..+.+|. +|...++....+ -.+-+++.
T Consensus 9 ~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfe-ghkgavw~~~l~~na~~aasaa--------- 78 (334)
T KOG0278|consen 9 TCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFE-GHKGAVWSATLNKNATRAASAA--------- 78 (334)
T ss_pred EEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeee-ccCcceeeeecCchhhhhhhhc---------
Confidence 3479999999999986 67799999999999999999999999999 444555544421 11222221
Q ss_pred cccCCceeEEeeecchhhHHHHhhhccccccCCcccccccccccCCCCCCCCceEEEEEeeccee-EeeeecccCCCCCc
Q 000722 81 AMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPK 159 (1331)
Q Consensus 81 ~l~gg~V~sVaf~DgtIrvWdl~tg~~l~~~~~~~~~~~~~~V~svafspdg~~lLasgs~d~iI-vwDl~t~~~~~i~~ 159 (1331)
.|=+-++||.-++..++ ...|...|.+++|+.|.+ .|++|+.++++ ++|++..+. ....
T Consensus 79 ------------adftakvw~a~tgdelh------sf~hkhivk~~af~~ds~-~lltgg~ekllrvfdln~p~A-pp~E 138 (334)
T KOG0278|consen 79 ------------ADFTAKVWDAVTGDELH------SFEHKHIVKAVAFSQDSN-YLLTGGQEKLLRVFDLNRPKA-PPKE 138 (334)
T ss_pred ------------ccchhhhhhhhhhhhhh------hhhhhheeeeEEecccch-hhhccchHHHhhhhhccCCCC-Cchh
Confidence 47788999998886543 122355788999999987 88999999988 569887654 3345
Q ss_pred cccccccceeeehhhcccCCCcceEeecCCCceeeeeehhhheeehhhcCCCccchhhhhHhhhccccEEEeecCCCceE
Q 000722 160 QELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLL 239 (1331)
Q Consensus 160 ~~~h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtI 239 (1331)
..+|.+.|+.+.|+ ...+.|++.++|++||+||.+++..++++. .+..|+++. .+++|++|.+ ...+.|
T Consensus 139 ~~ghtg~Ir~v~wc-----~eD~~iLSSadd~tVRLWD~rTgt~v~sL~--~~s~VtSlE---vs~dG~ilTi-a~gssV 207 (334)
T KOG0278|consen 139 ISGHTGGIRTVLWC-----HEDKCILSSADDKTVRLWDHRTGTEVQSLE--FNSPVTSLE---VSQDGRILTI-AYGSSV 207 (334)
T ss_pred hcCCCCcceeEEEe-----ccCceEEeeccCCceEEEEeccCcEEEEEe--cCCCCccee---eccCCCEEEE-ecCcee
Confidence 68899999999994 467788888999999999999999999885 678899997 7899877655 567889
Q ss_pred EEEeccCCCccccccccceeeeccCcEEEEEechhccCCCcEEEeecCceeEeeeccchhhhcccCCCCccccccccccc
Q 000722 240 ILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWC 319 (1331)
Q Consensus 240 rVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~s 319 (1331)
++||..+-..++.+ .-...|.+...+| +...+++|+.|..++.||+.++..+..+ ..+|.++|.|
T Consensus 208 ~Fwdaksf~~lKs~-------k~P~nV~SASL~P---~k~~fVaGged~~~~kfDy~TgeEi~~~-----nkgh~gpVhc 272 (334)
T KOG0278|consen 208 KFWDAKSFGLLKSY-------KMPCNVESASLHP---KKEFFVAGGEDFKVYKFDYNTGEEIGSY-----NKGHFGPVHC 272 (334)
T ss_pred EEeccccccceeec-------cCccccccccccC---CCceEEecCcceEEEEEeccCCceeeec-----ccCCCCceEE
Confidence 99999987765542 1234588999999 7789999999999999999999977652 3789999999
Q ss_pred CCCCCCCcee-eeeecce--eeeeec
Q 000722 320 HPRAPNLDIL-TCVKDSH--IWAIEH 342 (1331)
Q Consensus 320 vafspdg~lL-a~s~Dg~--IWdl~~ 342 (1331)
+.|+|+|.+. +||+||+ ||....
T Consensus 273 VrFSPdGE~yAsGSEDGTirlWQt~~ 298 (334)
T KOG0278|consen 273 VRFSPDGELYASGSEDGTIRLWQTTP 298 (334)
T ss_pred EEECCCCceeeccCCCceEEEEEecC
Confidence 9999999965 6889996 787764
No 64
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.86 E-value=8.8e-22 Score=241.11 Aligned_cols=242 Identities=21% Similarity=0.301 Sum_probs=204.4
Q ss_pred cccCCCcEEEEEeecCCceeEeecCCCceeeeccccceEEeeeccCCcccchhhhhhhhhhcccccccCCCCcccccCCc
Q 000722 7 FRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRGGS 86 (1331)
Q Consensus 7 L~gHs~~V~~lafSPdg~~LaSgs~DGtV~VWD~~tg~~i~s~~~~~~~~i~~vspdg~~Lasgs~d~~g~~l~~l~gg~ 86 (1331)
|.||.+.|++++|..-+..|++|+.|.+++|||+.+|+|++.+. +|.+.+.++.-....+.+++
T Consensus 245 l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~-gh~stv~~~~~~~~~~~sgs--------------- 308 (537)
T KOG0274|consen 245 LVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQ-GHTSSVRCLTIDPFLLVSGS--------------- 308 (537)
T ss_pred ccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEec-CCCceEEEEEccCceEeecc---------------
Confidence 89999999999999888899999999999999999999999999 55566555554444444332
Q ss_pred eeEEeeecchhhHHHHhhhccccccCCcccccccccccCCCCCCCCceEEEEEeeccee-EeeeecccCCCCCccccccc
Q 000722 87 VKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQELDNK 165 (1331)
Q Consensus 87 V~sVaf~DgtIrvWdl~tg~~l~~~~~~~~~~~~~~V~svafspdg~~lLasgs~d~iI-vwDl~t~~~~~i~~~~~h~~ 165 (1331)
.|.+|++|++.++.++ ....+ |...|+++..+ +. ++++|+.|+.+ +||+.+++ ++..+.+|..
T Consensus 309 ------~D~tVkVW~v~n~~~l----~l~~~-h~~~V~~v~~~--~~-~lvsgs~d~~v~VW~~~~~~--cl~sl~gH~~ 372 (537)
T KOG0274|consen 309 ------RDNTVKVWDVTNGACL----NLLRG-HTGPVNCVQLD--EP-LLVSGSYDGTVKVWDPRTGK--CLKSLSGHTG 372 (537)
T ss_pred ------CCceEEEEeccCcceE----EEecc-ccccEEEEEec--CC-EEEEEecCceEEEEEhhhce--eeeeecCCcc
Confidence 4999999999988876 34444 58889999887 44 88999988866 89999754 6778999999
Q ss_pred cceeeehhhcccCCCc-ceEeecCCCceeeeeehhhh-eeehhhcCCCccchhhhhHhhhccccEEEeecCCCceEEEEe
Q 000722 166 SLVCMEFLSRSAVGDV-PLVAFGSSDGVIRVLSMISW-KLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWS 243 (1331)
Q Consensus 166 ~V~~Vaf~P~s~Spdg-~~LasGs~DGtIrlWDl~t~-~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrVWD 243 (1331)
.|+++.+ ++ ..+++|+.|++|++||+.+. +|+..+. +|...|+++. ..+++|++++.|++|++||
T Consensus 373 ~V~sl~~-------~~~~~~~Sgs~D~~IkvWdl~~~~~c~~tl~-~h~~~v~~l~-----~~~~~Lvs~~aD~~Ik~WD 439 (537)
T KOG0274|consen 373 RVYSLIV-------DSENRLLSGSLDTTIKVWDLRTKRKCIHTLQ-GHTSLVSSLL-----LRDNFLVSSSADGTIKLWD 439 (537)
T ss_pred eEEEEEe-------cCcceEEeeeeccceEeecCCchhhhhhhhc-CCcccccccc-----cccceeEeccccccEEEee
Confidence 9999998 45 89999999999999999999 9999997 9999998775 3678999999999999999
Q ss_pred ccCCCccccccccceeee-ccCcEEEEEechhccCCCcEEEeecCceeEeeeccchhhhccc
Q 000722 244 ADHGQDSRELVPKLSLKA-HDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRI 304 (1331)
Q Consensus 244 l~tg~~~~~~~~~~~l~g-H~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~ 304 (1331)
..++++++. +.+ |...|..+++. ...+++++.||++++||++++++.+.+
T Consensus 440 ~~~~~~~~~------~~~~~~~~v~~l~~~-----~~~il~s~~~~~~~l~dl~~~~~~~~l 490 (537)
T KOG0274|consen 440 AEEGECLRT------LEGRHVGGVSALALG-----KEEILCSSDDGSVKLWDLRSGTLIRTL 490 (537)
T ss_pred cccCceeee------eccCCcccEEEeecC-----cceEEEEecCCeeEEEecccCchhhhh
Confidence 999987765 455 66788888875 358999999999999999999988764
No 65
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=1.9e-20 Score=220.52 Aligned_cols=456 Identities=15% Similarity=0.202 Sum_probs=281.2
Q ss_pred ccccccCCCcEEEEEeecCCceeEeecCCCceeeeccccceEEe-eeccCCcccchhhhhhhhhhcccccccCCCCcccc
Q 000722 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIY-ELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAM 82 (1331)
Q Consensus 4 l~~L~gHs~~V~~lafSPdg~~LaSgs~DGtV~VWD~~tg~~i~-s~~~~~~~~i~~vspdg~~Lasgs~d~~g~~l~~l 82 (1331)
++.+.-....|.|+||+.+.+.||.+-.||.|.||+++.+-+.. .+..+....+..++ +.
T Consensus 18 crf~d~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~-------W~------------ 78 (691)
T KOG2048|consen 18 CRFVDYKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLA-------WA------------ 78 (691)
T ss_pred EEEEeeeccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEE-------Ec------------
Confidence 44455566789999999999999999999999999998765433 34432211222221 11
Q ss_pred cCCceeEEeeecchhhHHHHhhhccccccCCcccccccccccCCCCCCCCceEEEEEeecceeE-eeeecccCCCCCccc
Q 000722 83 RGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIF-LDLVTMRGRDIPKQE 161 (1331)
Q Consensus 83 ~gg~V~sVaf~DgtIrvWdl~tg~~l~~~~~~~~~~~~~~V~svafspdg~~lLasgs~d~iIv-wDl~t~~~~~i~~~~ 161 (1331)
.++...++. .+|.|.-||+.+.+.+. ........||+++.+|.+. .+++||+|+++. ++...+.......+.
T Consensus 79 e~~RLFS~g-~sg~i~EwDl~~lk~~~-----~~d~~gg~IWsiai~p~~~-~l~IgcddGvl~~~s~~p~~I~~~r~l~ 151 (691)
T KOG2048|consen 79 EGGRLFSSG-LSGSITEWDLHTLKQKY-----NIDSNGGAIWSIAINPENT-ILAIGCDDGVLYDFSIGPDKITYKRSLM 151 (691)
T ss_pred cCCeEEeec-CCceEEEEecccCceeE-----EecCCCcceeEEEeCCccc-eEEeecCCceEEEEecCCceEEEEeecc
Confidence 022333333 38899999998886542 2233356899999999997 888888888553 355444333222344
Q ss_pred cccccceeeehhhcccCCCcceEeecCCCceeeeeehhhheeehhh-------cCCCccchhhhhHhhhccccEEEeecC
Q 000722 162 LDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRY-------TGGHKGSISCLMTFMASSGEALLVSGG 234 (1331)
Q Consensus 162 ~h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~~~v~~~-------~~gH~~~V~~vawf~~spdg~lLaSgs 234 (1331)
...+.|.|+.| ++++..|++|+.||.|++||..++..+... ..+...-|+++. +- ....|++|.
T Consensus 152 rq~sRvLslsw-----~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~---~L-rd~tI~sgD 222 (691)
T KOG2048|consen 152 RQKSRVLSLSW-----NPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVL---FL-RDSTIASGD 222 (691)
T ss_pred cccceEEEEEe-----cCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEE---Ee-ecCcEEEec
Confidence 44689999999 678999999999999999999988666521 111233455554 23 445899999
Q ss_pred CCceEEEEeccCCCccccccccceeeeccCcEEEEEechhccCCCcEEEeecCceeEeeeccchhhhcccCCCCcccccc
Q 000722 235 SDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHS 314 (1331)
Q Consensus 235 ~DgtIrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~ 314 (1331)
.-|+|.+||...+..++. +..|...|.+++..+ ++++++++|.|+.|..|...+.+.- +........|.
T Consensus 223 S~G~V~FWd~~~gTLiqS------~~~h~adVl~Lav~~---~~d~vfsaGvd~~ii~~~~~~~~~~--wv~~~~r~~h~ 291 (691)
T KOG2048|consen 223 SAGTVTFWDSIFGTLIQS------HSCHDADVLALAVAD---NEDRVFSAGVDPKIIQYSLTTNKSE--WVINSRRDLHA 291 (691)
T ss_pred CCceEEEEcccCcchhhh------hhhhhcceeEEEEcC---CCCeEEEccCCCceEEEEecCCccc--eeeeccccCCc
Confidence 999999999999987665 578999999999998 7899999999999999988765431 11122346788
Q ss_pred cccccCCCCCCCceeeeeecceeeeeecCccc----cc-------------------------ccccccccc--------
Q 000722 315 VASWCHPRAPNLDILTCVKDSHIWAIEHPTYS----AL-------------------------TRPLCELSS-------- 357 (1331)
Q Consensus 315 ~~V~svafspdg~lLa~s~Dg~IWdl~~~~~~----~l-------------------------~~~~~~~~~-------- 357 (1331)
..|.+++..++ .++++|.|.++.-...+... .+ ...+|.+.+
T Consensus 292 hdvrs~av~~~-~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~ 370 (691)
T KOG2048|consen 292 HDVRSMAVIEN-ALISGGRDFTLAICSSREFKNMDHRQKNLFPASDRVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYN 370 (691)
T ss_pred ccceeeeeecc-eEEecceeeEEEEccccccCchhhhccccccccceeecCccceEEEEeccccccceeccCcccccccC
Confidence 88888888776 46677877764222111100 00 000111111
Q ss_pred CCCccccccccceEEEEEEeccCCccEeeecceeEEEEeecCCCCCCCCCC-----CCCCCCCCCcceEEEeeeee----
Q 000722 358 LVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPRSLPAVAP-----LPTPSGSRDHSAVYIVEREL---- 428 (1331)
Q Consensus 358 ~~~~~~l~~h~~~~I~~la~sp~~~~lLAtGs~DG~Il~VWDlr~~p~i~~-----~~t~s~~~~~s~~~~~~~~l---- 428 (1331)
...+..+.......|.|.+.|| ++++|+.+.-..+ ++|.+.-.+.+.. .+.... ......|..++..
T Consensus 371 ~~~Llkl~~k~~~nIs~~aiSP-dg~~Ia~st~~~~--~iy~L~~~~~vk~~~v~~~~~~~~-~a~~i~ftid~~k~~~~ 446 (691)
T KOG2048|consen 371 YIHLLKLFTKEKENISCAAISP-DGNLIAISTVSRT--KIYRLQPDPNVKVINVDDVPLALL-DASAISFTIDKNKLFLV 446 (691)
T ss_pred hhhheeeecCCccceeeeccCC-CCCEEEEeeccce--EEEEeccCcceeEEEeccchhhhc-cceeeEEEecCceEEEE
Confidence 1111122222233699999999 6888999886666 4666553222111 111110 1112333433332
Q ss_pred -----eeeeeecccCCCCCCCCCCCccccCCCCCCCCchhhHhhhccccccccCCCceeEEEEeeCCcEEEEEcCCCcee
Q 000722 429 -----KLVNFQLSSAANPSLGNNGSLSETGRLKGDLPDALQIKQIKKHISTPVPHDSYSILSVSSSGKYLAVVWPDIPYF 503 (1331)
Q Consensus 429 -----~l~~fq~~~~~~~~lg~~~~ls~~G~~~~~~~e~l~v~~~~r~i~t~~~~e~~s~ls~SpdGrylaVv~~~~g~y 503 (1331)
.+..|+.. ....+++.- +....-.+..+.+.+|++|.|+++.. ..|.+
T Consensus 447 s~~~~~le~~el~--------------------~ps~kel~~------~~~~~~~~~I~~l~~SsdG~yiaa~~-t~g~I 499 (691)
T KOG2048|consen 447 SKNIFSLEEFELE--------------------TPSFKELKS------IQSQAKCPSISRLVVSSDGNYIAAIS-TRGQI 499 (691)
T ss_pred ecccceeEEEEec--------------------Ccchhhhhc------cccccCCCcceeEEEcCCCCEEEEEe-ccceE
Confidence 11112211 111122111 11111224456899999999997765 78889
Q ss_pred eEEeecceeEee-----cCcceeeehhc-chhhHHHhhhc
Q 000722 504 SVYKVSDWSIVD-----SGSARLLAWDT-CRDRFAILESA 537 (1331)
Q Consensus 504 ~Iy~i~~~~~i~-----~G~~~~~aWs~-~~~~fAvl~~~ 537 (1331)
.+|++.+.+... .-.++..++++ .+++.+|..++
T Consensus 500 ~v~nl~~~~~~~l~~rln~~vTa~~~~~~~~~~lvvats~ 539 (691)
T KOG2048|consen 500 FVYNLETLESHLLKVRLNIDVTAAAFSPFVRNRLVVATSN 539 (691)
T ss_pred EEEEcccceeecchhccCcceeeeeccccccCcEEEEecC
Confidence 999987654322 23356666663 56666666543
No 66
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=3e-21 Score=233.30 Aligned_cols=306 Identities=14% Similarity=0.173 Sum_probs=198.5
Q ss_pred cccc-cCCCcEEEEEeecCCceeEeecCCCceeeeccccceEEeeeccCCcccchhhh-hhhhhhcccccc-c-CCCCcc
Q 000722 5 KAFR-PTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVG-AKLEKLAEGELE-H-KGKPTE 80 (1331)
Q Consensus 5 ~~L~-gHs~~V~~lafSPdg~~LaSgs~DGtV~VWD~~tg~~i~s~~~~~~~~i~~vs-pdg~~Lasgs~d-~-~g~~l~ 80 (1331)
+.+. .|.+.|+++.||+||+|||+|+.|+.|+||.+...+. ..........+..-- ..++........ . .++...
T Consensus 260 Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~-~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~ 338 (712)
T KOG0283|consen 260 QEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESER-MRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSS 338 (712)
T ss_pred eccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccch-hcccccccchhhhhhhhccccCccccccccccccccc
Confidence 4456 8999999999999999999999999999999875433 222211111111000 000000000000 0 000000
Q ss_pred cccCCceeEEeeecchhhHHHHhhhccccccCCcccccccccccCCCCCCCCceEEEEEeeccee-EeeeecccCCCCCc
Q 000722 81 AMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPK 159 (1331)
Q Consensus 81 ~l~gg~V~sVaf~DgtIrvWdl~tg~~l~~~~~~~~~~~~~~V~svafspdg~~lLasgs~d~iI-vwDl~t~~~~~i~~ 159 (1331)
.-.+.. ...+.+ ................+| ...|.++.|+.++ +|.+.+.|+++ +|++...+ ++.
T Consensus 339 ~~~~~~-------s~~~~~-p~~~f~f~ekP~~ef~GH-t~DILDlSWSKn~--fLLSSSMDKTVRLWh~~~~~--CL~- 404 (712)
T KOG0283|consen 339 SRKGSQ-------SPCVLL-PLKAFVFSEKPFCEFKGH-TADILDLSWSKNN--FLLSSSMDKTVRLWHPGRKE--CLK- 404 (712)
T ss_pred cccccC-------CccccC-CCccccccccchhhhhcc-chhheecccccCC--eeEeccccccEEeecCCCcc--eee-
Confidence 000000 000000 000000001112334555 7789999999876 88899989888 78887644 332
Q ss_pred cccccccceeeehhhcccCCCcceEeecCCCceeeeeehhhheeehhhcCCCccchhhhhHhhhccccEEEeecCCCceE
Q 000722 160 QELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLL 239 (1331)
Q Consensus 160 ~~~h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtI 239 (1331)
...|.+.|+||+|+|. |.+++++||-||.||||++...+.+.-.. -...|++++ +.|+|+..+.|+.+|.+
T Consensus 405 ~F~HndfVTcVaFnPv----DDryFiSGSLD~KvRiWsI~d~~Vv~W~D--l~~lITAvc---y~PdGk~avIGt~~G~C 475 (712)
T KOG0283|consen 405 VFSHNDFVTCVAFNPV----DDRYFISGSLDGKVRLWSISDKKVVDWND--LRDLITAVC---YSPDGKGAVIGTFNGYC 475 (712)
T ss_pred EEecCCeeEEEEeccc----CCCcEeecccccceEEeecCcCeeEeehh--hhhhheeEE---eccCCceEEEEEeccEE
Confidence 4578999999999884 88999999999999999999877766543 448899998 89999999999999999
Q ss_pred EEEeccCCCcccccc----ccceeeeccCcEEEEEechhccCCCcEEEeecCceeEeeeccchhhhcccCCCCccccccc
Q 000722 240 ILWSADHGQDSRELV----PKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSV 315 (1331)
Q Consensus 240 rVWDl~tg~~~~~~~----~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~ 315 (1331)
++|+....+....+. .... ..|. .|+++.|.| .+...+++.+.|..|||||.++...+..++......
T Consensus 476 ~fY~t~~lk~~~~~~I~~~~~Kk-~~~~-rITG~Q~~p--~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~---- 547 (712)
T KOG0283|consen 476 RFYDTEGLKLVSDFHIRLHNKKK-KQGK-RITGLQFFP--GDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTS---- 547 (712)
T ss_pred EEEEccCCeEEEeeeEeeccCcc-ccCc-eeeeeEecC--CCCCeEEEecCCCceEEEeccchhhhhhhcccccCC----
Confidence 999998765433210 0001 1122 799999999 355578888999999999998888887765432221
Q ss_pred ccccCCCCCCCcee-eeeecce--eeeeec
Q 000722 316 ASWCHPRAPNLDIL-TCVKDSH--IWAIEH 342 (1331)
Q Consensus 316 ~V~svafspdg~lL-a~s~Dg~--IWdl~~ 342 (1331)
.-....|+.||++| ++++|.. ||+...
T Consensus 548 SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 548 SQISASFSSDGKHIVSASEDSWVYIWKNDS 577 (712)
T ss_pred cceeeeEccCCCEEEEeecCceEEEEeCCC
Confidence 11256788899966 5666664 788753
No 67
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=3.6e-21 Score=203.88 Aligned_cols=242 Identities=20% Similarity=0.299 Sum_probs=197.2
Q ss_pred cccCCCCCCCCceEEEEEeeccee-EeeeecccCCCCCccccccccceeeehhhcccCCCcceEeecCCCceeeeeehhh
Q 000722 122 GFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMIS 200 (1331)
Q Consensus 122 ~V~svafspdg~~lLasgs~d~iI-vwDl~t~~~~~i~~~~~h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t 200 (1331)
.+..++|++...+.+++++.|+.+ +||.. .....+..++.|..+|.++.|.+ .+...++++|.|++|++|+...
T Consensus 62 ~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~-~~s~Pi~~~kEH~~EV~Svdwn~----~~r~~~ltsSWD~TiKLW~~~r 136 (311)
T KOG0277|consen 62 GLFDVAWSENHENQVIAASGDGSLRLFDLT-MPSKPIHKFKEHKREVYSVDWNT----VRRRIFLTSSWDGTIKLWDPNR 136 (311)
T ss_pred ceeEeeecCCCcceEEEEecCceEEEeccC-CCCcchhHHHhhhhheEEecccc----ccceeEEeeccCCceEeecCCC
Confidence 345677888877788888888877 77843 33456778899999999999964 3567788889999999999998
Q ss_pred heeehhhcCCCccchhhhhHhhhccccEEEeecCCCceEEEEeccCCCccccccccceeeeccCcEEEEEechhccCCCc
Q 000722 201 WKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQ 280 (1331)
Q Consensus 201 ~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~ 280 (1331)
.+.+.+|. ||..-|....| .+..+++|+++|.|+++++||++.... ...+..|...+.++.|+.. +...
T Consensus 137 ~~Sv~Tf~-gh~~~Iy~a~~--sp~~~nlfas~Sgd~~l~lwdvr~~gk------~~~i~ah~~Eil~cdw~ky--~~~v 205 (311)
T KOG0277|consen 137 PNSVQTFN-GHNSCIYQAAF--SPHIPNLFASASGDGTLRLWDVRSPGK------FMSIEAHNSEILCCDWSKY--NHNV 205 (311)
T ss_pred CcceEeec-CCccEEEEEec--CCCCCCeEEEccCCceEEEEEecCCCc------eeEEEeccceeEeeccccc--CCcE
Confidence 89999998 99999999984 455678999999999999999986532 2237889999999999984 7889
Q ss_pred EEEeecCceeEeeeccchhhhcccCCCCcccccccccccCCCCCCCc-ee-eeeecce--eeeeecCccccccccccccc
Q 000722 281 LITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLD-IL-TCVKDSH--IWAIEHPTYSALTRPLCELS 356 (1331)
Q Consensus 281 LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg~-lL-a~s~Dg~--IWdl~~~~~~~l~~~~~~~~ 356 (1331)
++||+.|+.||+||++..+ .++..+.+|.-.|..+.|||... +| +++.|-+ |||.....
T Consensus 206 l~Tg~vd~~vr~wDir~~r-----~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~d------------ 268 (311)
T KOG0277|consen 206 LATGGVDNLVRGWDIRNLR-----TPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQD------------ 268 (311)
T ss_pred EEecCCCceEEEEehhhcc-----ccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccch------------
Confidence 9999999999999998755 24555899999999999999865 44 7888874 89987431
Q ss_pred cCCCccccccccceEEEEEEeccCCccEeeecceeEEEEeecCC
Q 000722 357 SLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDP 400 (1331)
Q Consensus 357 ~~~~~~~l~~h~~~~I~~la~sp~~~~lLAtGs~DG~Il~VWDl 400 (1331)
..+.+...|.. -+..++|++.++.++|+.+-|+.+ +||+.
T Consensus 269 --s~~e~~~~HtE-Fv~g~Dws~~~~~~vAs~gWDe~l-~Vw~p 308 (311)
T KOG0277|consen 269 --SAIETVDHHTE-FVCGLDWSLFDPGQVASTGWDELL-YVWNP 308 (311)
T ss_pred --hhhhhhhccce-EEeccccccccCceeeecccccce-eeecc
Confidence 22334556666 899999999999999999999998 89984
No 68
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.86 E-value=1.2e-21 Score=217.38 Aligned_cols=262 Identities=16% Similarity=0.223 Sum_probs=202.4
Q ss_pred ecchhhHHHHhhhccccccCCcccccccccccCCCCCCCCc--eEEEEEeeccee-Eeeeeccc--CCCCCccccccccc
Q 000722 93 YDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGR--HFLVICCVNKAI-FLDLVTMR--GRDIPKQELDNKSL 167 (1331)
Q Consensus 93 ~DgtIrvWdl~tg~~l~~~~~~~~~~~~~~V~svafspdg~--~lLasgs~d~iI-vwDl~t~~--~~~i~~~~~h~~~V 167 (1331)
+||.+|+||...... ....+| .+++.+++|.-... ..|++++.|+.+ +|-++.++ ...+..-.+|...|
T Consensus 123 YDg~~riWd~~Gk~~-----~~~~Gh-t~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V 196 (423)
T KOG0313|consen 123 YDGTSRIWDLKGKSI-----KTIVGH-TGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSV 196 (423)
T ss_pred cCCeeEEEecCCceE-----EEEecC-CcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccce
Confidence 699999999765432 344555 77787777643322 368999999988 66555443 23344445999999
Q ss_pred eeeehhhcccCCCcceEeecCCCceeeeeehhh-------------------------heeehhhcCCCccchhhhhHhh
Q 000722 168 VCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMIS-------------------------WKLVRRYTGGHKGSISCLMTFM 222 (1331)
Q Consensus 168 ~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t-------------------------~~~v~~~~~gH~~~V~~vawf~ 222 (1331)
-||.. .++|..+++||.|.+|+||+..+ +.++..+ .||...|.++.|
T Consensus 197 ~sVsv-----~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl-~GHt~~Vs~V~w-- 268 (423)
T KOG0313|consen 197 DSVSV-----DSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTL-EGHTEPVSSVVW-- 268 (423)
T ss_pred eEEEe-----cCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEe-cccccceeeEEE--
Confidence 99999 67999999999999999999321 1122233 499999999985
Q ss_pred hccccEEEeecCCCceEEEEeccCCCccccccccceeeeccCcEEEEEechhccCCCcEEEeecCceeEeeeccchhhhc
Q 000722 223 ASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELR 302 (1331)
Q Consensus 223 ~spdg~lLaSgs~DgtIrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~ 302 (1331)
++ ...+.++|.|.+|++||+.++.+..+ +. ....++++.++| ...+|++||.|..||+||.+++.--.
T Consensus 269 -~d-~~v~yS~SwDHTIk~WDletg~~~~~------~~-~~ksl~~i~~~~---~~~Ll~~gssdr~irl~DPR~~~gs~ 336 (423)
T KOG0313|consen 269 -SD-ATVIYSVSWDHTIKVWDLETGGLKST------LT-TNKSLNCISYSP---LSKLLASGSSDRHIRLWDPRTGDGSV 336 (423)
T ss_pred -cC-CCceEeecccceEEEEEeecccceee------ee-cCcceeEeeccc---ccceeeecCCCCceeecCCCCCCCce
Confidence 33 66899999999999999999987554 22 345689999999 78999999999999999998764211
Q ss_pred ccCCCCcccccccccccCCCCCCCc--eeeeeecce--eeeeecCccccccccccccccCCCccccccccceEEEEEEec
Q 000722 303 RIKPVPKLACHSVASWCHPRAPNLD--ILTCVKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAH 378 (1331)
Q Consensus 303 ~~~~~~~l~~H~~~V~svafspdg~--lLa~s~Dg~--IWdl~~~~~~~l~~~~~~~~~~~~~~~l~~h~~~~I~~la~s 378 (1331)
....+.+|.+.|.++.|+|... +++++.|++ +||++.. ..++..+.+|.+ +|.++.|.
T Consensus 337 ---v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~--------------k~plydI~~h~D-Kvl~vdW~ 398 (423)
T KOG0313|consen 337 ---VSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRST--------------KAPLYDIAGHND-KVLSVDWN 398 (423)
T ss_pred ---eEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccC--------------CCcceeeccCCc-eEEEEecc
Confidence 1234899999999999999876 558899996 8999964 135677888988 99999999
Q ss_pred cCCccEeeecceeEEEEeecCCC
Q 000722 379 SLQPHLVATGTNVGVIISEFDPR 401 (1331)
Q Consensus 379 p~~~~lLAtGs~DG~Il~VWDlr 401 (1331)
. +.+|++|+.|..+ +++...
T Consensus 399 ~--~~~IvSGGaD~~l-~i~~~~ 418 (423)
T KOG0313|consen 399 E--GGLIVSGGADNKL-RIFKGS 418 (423)
T ss_pred C--CceEEeccCcceE-EEeccc
Confidence 7 5679999999998 888654
No 69
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.85 E-value=2.8e-21 Score=216.22 Aligned_cols=284 Identities=12% Similarity=0.143 Sum_probs=217.0
Q ss_pred cccccCCCcEEEEEeecCCceeEeecCCCceeeeccccce--EEeeeccCCcccchhhhhhhhhhcccccccCCCCcccc
Q 000722 5 KAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQ--VIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAM 82 (1331)
Q Consensus 5 ~~L~gHs~~V~~lafSPdg~~LaSgs~DGtV~VWD~~tg~--~i~s~~~~~~~~i~~vspdg~~Lasgs~d~~g~~l~~l 82 (1331)
..+..|...|..+.|-++...|++|+.|..|++|++..++ .+.++.
T Consensus 169 ~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLa-------------------------------- 216 (459)
T KOG0288|consen 169 FVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLA-------------------------------- 216 (459)
T ss_pred hhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhh--------------------------------
Confidence 4578899999999999999999999999999999986543 111111
Q ss_pred cCCceeEEeeecchhhHHHHhhhccccccCCcccccccccccCCCCCCCCceEEEEEeecceeEeeeecccCCCCCcccc
Q 000722 83 RGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFLDLVTMRGRDIPKQEL 162 (1331)
Q Consensus 83 ~gg~V~sVaf~DgtIrvWdl~tg~~l~~~~~~~~~~~~~~V~svafspdg~~lLasgs~d~iIvwDl~t~~~~~i~~~~~ 162 (1331)
+. ...|+++.|.+++.++|+.+.+....+|++...+ ...++.+
T Consensus 217 ----------------------------------Gs-~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r--~~~TLsG 259 (459)
T KOG0288|consen 217 ----------------------------------GS-LGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLR--LRHTLSG 259 (459)
T ss_pred ----------------------------------cc-CCCcceeeecCCCceEEeecCCCceeeeeccchh--hhhhhcc
Confidence 11 3457778889999877777666667799988754 4557889
Q ss_pred ccccceeeehhhcccCCCcceEeecCCCceeeeeehhhheeehhhcCCCccchhhhhHhhhccccEEEeecCCCceEEEE
Q 000722 163 DNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILW 242 (1331)
Q Consensus 163 h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrVW 242 (1331)
|.+.|+++.|. .....+++|+.|.+|++||+....|.+++. -...++.|. . .+..++||-.|++||+|
T Consensus 260 HtdkVt~ak~~-----~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l--~~S~cnDI~---~--~~~~~~SgH~DkkvRfw 327 (459)
T KOG0288|consen 260 HTDKVTAAKFK-----LSHSRVVSGSADRTIKLWDLQKAYCSKTVL--PGSQCNDIV---C--SISDVISGHFDKKVRFW 327 (459)
T ss_pred cccceeeehhh-----ccccceeeccccchhhhhhhhhhheecccc--ccccccceE---e--cceeeeecccccceEEE
Confidence 99999999993 334449999999999999999999998875 334555554 1 25678999999999999
Q ss_pred eccCCCccccccccceeeeccCcEEEEEechhccCCCcEEEeecCceeEeeeccchhhhcccCCCCcccccccccccCCC
Q 000722 243 SADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPR 322 (1331)
Q Consensus 243 Dl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svaf 322 (1331)
|.++..+..+ ...|. .|+++..++ ++..|.+++.|.++.+.|+++....+.+....-..+|. .+.+.|
T Consensus 328 D~Rs~~~~~s------v~~gg-~vtSl~ls~---~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asD--wtrvvf 395 (459)
T KOG0288|consen 328 DIRSADKTRS------VPLGG-RVTSLDLSM---DGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASD--WTRVVF 395 (459)
T ss_pred eccCCceeeE------eecCc-ceeeEeecc---CCeEEeeecCCCceeeeecccccEEEEeeccccccccc--cceeEE
Confidence 9999886554 44444 799999999 89999999999999999999988776654433233343 678999
Q ss_pred CCCCcee-eeeecce--eeeeecCccccccccccccccCCCccccccccc-eEEEEEEeccCCccEeeecceeEEEEeec
Q 000722 323 APNLDIL-TCVKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKK-LRVYCMVAHSLQPHLVATGTNVGVIISEF 398 (1331)
Q Consensus 323 spdg~lL-a~s~Dg~--IWdl~~~~~~~l~~~~~~~~~~~~~~~l~~h~~-~~I~~la~sp~~~~lLAtGs~DG~Il~VW 398 (1331)
||++.|+ +||.||. ||++.+++. ...+..... ..|+++.|+|. |..+++++.++.+ .+|
T Consensus 396 Spd~~YvaAGS~dgsv~iW~v~tgKl---------------E~~l~~s~s~~aI~s~~W~~s-G~~Llsadk~~~v-~lW 458 (459)
T KOG0288|consen 396 SPDGSYVAAGSADGSVYIWSVFTGKL---------------EKVLSLSTSNAAITSLSWNPS-GSGLLSADKQKAV-TLW 458 (459)
T ss_pred CCCCceeeeccCCCcEEEEEccCceE---------------EEEeccCCCCcceEEEEEcCC-CchhhcccCCcce-Eec
Confidence 9999987 6788986 899987633 112222222 16999999995 6668888888887 688
No 70
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=2.9e-20 Score=193.05 Aligned_cols=309 Identities=17% Similarity=0.211 Sum_probs=226.5
Q ss_pred CCCcEEEEEeecCCceeEeecCCCceeeeccccceEEeeeccCCcccchhhhhhhhhhcccccccCCCCcccccCCceeE
Q 000722 10 TNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRGGSVKQ 89 (1331)
Q Consensus 10 Hs~~V~~lafSPdg~~LaSgs~DGtV~VWD~~tg~~i~s~~~~~~~~i~~vspdg~~Lasgs~d~~g~~l~~l~gg~V~s 89 (1331)
-+..|.+++|||.|.+.+.|+...+.+|--+..- ..+...|... . .+ ..|+
T Consensus 31 dsqairav~fhp~g~lyavgsnskt~ric~yp~l---~~~r~~hea~------------------~-~p------p~v~- 81 (350)
T KOG0641|consen 31 DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPAL---IDLRHAHEAA------------------K-QP------PSVL- 81 (350)
T ss_pred chhheeeEEecCCCceEEeccCCceEEEEccccc---cCcccccccc------------------c-CC------CeEE-
Confidence 4678999999999999999999999999876431 1111011000 0 00 0111
Q ss_pred EeeecchhhHHHHhhhccccccCCcccccccccccCCCCCCCCceEEEEEeecceeEe---eeecccCC-CCCccccccc
Q 000722 90 VNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFL---DLVTMRGR-DIPKQELDNK 165 (1331)
Q Consensus 90 Vaf~DgtIrvWdl~tg~~l~~~~~~~~~~~~~~V~svafspdg~~lLasgs~d~iIvw---Dl~t~~~~-~i~~~~~h~~ 165 (1331)
.....|+...|+|.+|+|+|+ ++++|+.|+.+.+ +..+.+.. .-..+..|.+
T Consensus 82 -----------------------~kr~khhkgsiyc~~ws~~ge-liatgsndk~ik~l~fn~dt~~~~g~dle~nmhdg 137 (350)
T KOG0641|consen 82 -----------------------CKRNKHHKGSIYCTAWSPCGE-LIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDG 137 (350)
T ss_pred -----------------------eeeccccCccEEEEEecCccC-eEEecCCCceEEEEecccccccccCcceeeeecCC
Confidence 123345688899999999998 9999999998833 44432211 1123567899
Q ss_pred cceeeehhhcccCCCcceEeecC-CCceeeeeehhhheeehhhcCCCccchhhhhHhhhccccEEEeecCCCceEEEEec
Q 000722 166 SLVCMEFLSRSAVGDVPLVAFGS-SDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSA 244 (1331)
Q Consensus 166 ~V~~Vaf~P~s~Spdg~~LasGs-~DGtIrlWDl~t~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrVWDl 244 (1331)
.|+.++|.... +..+.+|++++ .|..|++-|..+++....+. ||++.|.++ ++.++-+|++|+.|.+||+||+
T Consensus 138 tirdl~fld~~-~s~~~il~s~gagdc~iy~tdc~~g~~~~a~s-ghtghilal----yswn~~m~~sgsqdktirfwdl 211 (350)
T KOG0641|consen 138 TIRDLAFLDDP-ESGGAILASAGAGDCKIYITDCGRGQGFHALS-GHTGHILAL----YSWNGAMFASGSQDKTIRFWDL 211 (350)
T ss_pred ceeeeEEecCC-CcCceEEEecCCCcceEEEeecCCCCcceeec-CCcccEEEE----EEecCcEEEccCCCceEEEEee
Confidence 99999997531 22356777765 67788888998999888887 999999887 5779999999999999999999
Q ss_pred cCCCccccccccceeee-ccCcEEEEEechhccCCCcEEEeecCceeEeeeccchhhhcccCCCCcccccccccccCCCC
Q 000722 245 DHGQDSRELVPKLSLKA-HDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRA 323 (1331)
Q Consensus 245 ~tg~~~~~~~~~~~l~g-H~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafs 323 (1331)
+-..++..+...+.-.+ ....|.+++..| .+++|++|-.|....+||++.++.+++ +..|+..|.|+.|+
T Consensus 212 rv~~~v~~l~~~~~~~glessavaav~vdp---sgrll~sg~~dssc~lydirg~r~iq~------f~phsadir~vrfs 282 (350)
T KOG0641|consen 212 RVNSCVNTLDNDFHDGGLESSAVAAVAVDP---SGRLLASGHADSSCMLYDIRGGRMIQR------FHPHSADIRCVRFS 282 (350)
T ss_pred eccceeeeccCcccCCCcccceeEEEEECC---CcceeeeccCCCceEEEEeeCCceeee------eCCCccceeEEEeC
Confidence 98777654321111011 124689999999 899999999999999999999998888 67899999999999
Q ss_pred CCCc-eeeeeecce--eeeeecCccccccccccccccCCCccccccccceEEEEEEeccCCccEeeecceeEEEEeecCC
Q 000722 324 PNLD-ILTCVKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDP 400 (1331)
Q Consensus 324 pdg~-lLa~s~Dg~--IWdl~~~~~~~l~~~~~~~~~~~~~~~l~~h~~~~I~~la~sp~~~~lLAtGs~DG~Il~VWDl 400 (1331)
|... +|+|+.|.+ +-|+.. ++....++.....|++ .+..+.|||+ ..-+++.+.|.++ .+|-+
T Consensus 283 p~a~yllt~syd~~ikltdlqg-----------dla~el~~~vv~ehkd-k~i~~rwh~~-d~sfisssadkt~-tlwa~ 348 (350)
T KOG0641|consen 283 PGAHYLLTCSYDMKIKLTDLQG-----------DLAHELPIMVVAEHKD-KAIQCRWHPQ-DFSFISSSADKTA-TLWAL 348 (350)
T ss_pred CCceEEEEecccceEEEeeccc-----------chhhcCceEEEEeccC-ceEEEEecCc-cceeeeccCcceE-EEecc
Confidence 9977 558998886 445543 2222234556667777 7888999995 6668899999998 79965
No 71
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=3.9e-20 Score=200.78 Aligned_cols=297 Identities=16% Similarity=0.195 Sum_probs=197.4
Q ss_pred ccccccccCCCcEEEEEeecCCceeEeecCCCceeeeccccceEEeeeccCCcccchhhhhhhhhhcccccccCCCCccc
Q 000722 2 LRLKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEA 81 (1331)
Q Consensus 2 L~l~~L~gHs~~V~~lafSPdg~~LaSgs~DGtV~VWD~~tg~~i~s~~~~~~~~i~~vspdg~~Lasgs~d~~g~~l~~ 81 (1331)
|.+..|+||.+.|+|++|+.||++|+|++.|++|+||+++. |...
T Consensus 77 l~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~D------F~~~----------------------------- 121 (420)
T KOG2096|consen 77 LNVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRD------FENK----------------------------- 121 (420)
T ss_pred hhhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecch------hhhh-----------------------------
Confidence 45678999999999999999999999999999999999875 2100
Q ss_pred ccCCceeEEeeecchhhHHHHhhhccccccCCcccccccccccCCCCCCCCceEEEEEeeccee-Eeeee--c-ccCC--
Q 000722 82 MRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLV--T-MRGR-- 155 (1331)
Q Consensus 82 l~gg~V~sVaf~DgtIrvWdl~tg~~l~~~~~~~~~~~~~~V~svafspdg~~lLasgs~d~iI-vwDl~--t-~~~~-- 155 (1331)
..+++.. ....+| -+.+.|.||.+.+++.+..+..+ +|-.. + +...
T Consensus 122 ----------------------eHr~~R~--nve~dh----pT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~ 173 (420)
T KOG2096|consen 122 ----------------------EHRCIRQ--NVEYDH----PTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHH 173 (420)
T ss_pred ----------------------hhhHhhc--cccCCC----ceEEEECCCcceEEEEEccCCEEEEEEeeecccCCCCcc
Confidence 0001100 011112 24467999988777766555444 55332 1 1111
Q ss_pred CCC-----ccccccccceeeehhhcccCCCcceEeecCCCceeeeeehhhheeehhhcCCCccchhhhhHhhhccccEEE
Q 000722 156 DIP-----KQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALL 230 (1331)
Q Consensus 156 ~i~-----~~~~h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~~~v~~~~~gH~~~V~~vawf~~spdg~lL 230 (1331)
.+. ....|...+-.+-. ..++.+|++++.|..|.||+++ |+.+..+. .....-+..+ .+|+|+++
T Consensus 174 ~v~~D~~~f~~kh~v~~i~iGi-----A~~~k~imsas~dt~i~lw~lk-Gq~L~~id-tnq~~n~~aa---vSP~GRFi 243 (420)
T KOG2096|consen 174 FVHIDNLEFERKHQVDIINIGI-----AGNAKYIMSASLDTKICLWDLK-GQLLQSID-TNQSSNYDAA---VSPDGRFI 243 (420)
T ss_pred cccccccccchhcccceEEEee-----cCCceEEEEecCCCcEEEEecC-Cceeeeec-ccccccccee---eCCCCcEE
Confidence 011 01122333444444 4578899999999999999999 88877775 3333333333 79999999
Q ss_pred eecCCCceEEEEeccCCC--ccccccccceeeeccCcEEEEEechhccCCCcEEEeecCceeEeeeccc-------hhhh
Q 000722 231 VSGGSDGLLILWSADHGQ--DSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVS-------FKEL 301 (1331)
Q Consensus 231 aSgs~DgtIrVWDl~tg~--~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t-------~~~l 301 (1331)
++++.---|+||.+--++ ..++....+.|+||...|.+++|++ +...+++.|.||++||||.+- .+.+
T Consensus 244 a~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn---~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~L 320 (420)
T KOG2096|consen 244 AVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSN---SSTRAVTVSKDGKWRIWDTDVRYEAGQDPKIL 320 (420)
T ss_pred EEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCC---CcceeEEEecCCcEEEeeccceEecCCCchHh
Confidence 999999999999974322 2344456778999999999999999 889999999999999999862 1222
Q ss_pred cccCCCCcccccccccccCCCCCCCceeeeeecc--eeeeeecCccccccccccccccCCCcccc-ccccceEEEEEEec
Q 000722 302 RRIKPVPKLACHSVASWCHPRAPNLDILTCVKDS--HIWAIEHPTYSALTRPLCELSSLVPPQVL-AHHKKLRVYCMVAH 378 (1331)
Q Consensus 302 ~~~~~~~~l~~H~~~V~svafspdg~lLa~s~Dg--~IWdl~~~~~~~l~~~~~~~~~~~~~~~l-~~h~~~~I~~la~s 378 (1331)
++.. ..+..-...-..+..+|+|+.|+.+... +++..+++.. .-++ ..|+. .|.|+.|+
T Consensus 321 k~g~--~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~---------------~~~~e~~h~~-~Is~is~~ 382 (420)
T KOG2096|consen 321 KEGS--APLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKD---------------YPELEDIHST-TISSISYS 382 (420)
T ss_pred hcCC--cchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCcc---------------chhHHHhhcC-ceeeEEec
Confidence 2221 1122222333478999999988765443 4555554311 1122 23555 89999999
Q ss_pred cCCccEeeecceeEE
Q 000722 379 SLQPHLVATGTNVGV 393 (1331)
Q Consensus 379 p~~~~lLAtGs~DG~ 393 (1331)
+ ++.+++++++.-.
T Consensus 383 ~-~g~~~atcGdr~v 396 (420)
T KOG2096|consen 383 S-DGKYIATCGDRYV 396 (420)
T ss_pred C-CCcEEeeecceee
Confidence 9 5777888776544
No 72
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=7.6e-21 Score=199.21 Aligned_cols=243 Identities=15% Similarity=0.189 Sum_probs=195.6
Q ss_pred cccccCCCCCCCCceEEEEEeeccee-EeeeecccCCCCCccccccccceeeehhhcccCCCcceEeecCCCceeeeeeh
Q 000722 120 TSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSM 198 (1331)
Q Consensus 120 ~~~V~svafspdg~~lLasgs~d~iI-vwDl~t~~~~~i~~~~~h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl 198 (1331)
...|+.+.|+-+|+ +.++|+.|+++ +|+...+ ..+++..+|..+|..++. +.|+..+++|+.|..|.+||+
T Consensus 17 qgaV~avryN~dGn-Y~ltcGsdrtvrLWNp~rg--~liktYsghG~EVlD~~~-----s~Dnskf~s~GgDk~v~vwDV 88 (307)
T KOG0316|consen 17 QGAVRAVRYNVDGN-YCLTCGSDRTVRLWNPLRG--ALIKTYSGHGHEVLDAAL-----SSDNSKFASCGGDKAVQVWDV 88 (307)
T ss_pred ccceEEEEEccCCC-EEEEcCCCceEEeeccccc--ceeeeecCCCceeeeccc-----cccccccccCCCCceEEEEEc
Confidence 66788889999998 77777777777 8988764 467889999999999998 678999999999999999999
Q ss_pred hhheeehhhcCCCccchhhhhHhhhccccEEEeecCCCceEEEEeccCCCccccccccceeeeccCcEEEEEechhccCC
Q 000722 199 ISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGS 278 (1331)
Q Consensus 199 ~t~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg 278 (1331)
.+|+.++.+. +|...|+.++ |+.+...+++|+.|.++++||.++.. +.|+..+....+.|.++... +
T Consensus 89 ~TGkv~Rr~r-gH~aqVNtV~---fNeesSVv~SgsfD~s~r~wDCRS~s----~ePiQildea~D~V~Si~v~-----~ 155 (307)
T KOG0316|consen 89 NTGKVDRRFR-GHLAQVNTVR---FNEESSVVASGSFDSSVRLWDCRSRS----FEPIQILDEAKDGVSSIDVA-----E 155 (307)
T ss_pred ccCeeeeecc-cccceeeEEE---ecCcceEEEeccccceeEEEEcccCC----CCccchhhhhcCceeEEEec-----c
Confidence 9999999998 9999999998 89999999999999999999998765 45666778888899999986 4
Q ss_pred CcEEEeecCceeEeeeccchhhhcccCCCCcccccccccccCCCCCCCc-eeeeeeccee--eeeecCcccccccccccc
Q 000722 279 PQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLD-ILTCVKDSHI--WAIEHPTYSALTRPLCEL 355 (1331)
Q Consensus 279 ~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg~-lLa~s~Dg~I--Wdl~~~~~~~l~~~~~~~ 355 (1331)
..|+.||.||++|.||++.|+.... .-..+|+|+.|++++. .|+++-|+++ -|-.++
T Consensus 156 heIvaGS~DGtvRtydiR~G~l~sD--------y~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tG------------ 215 (307)
T KOG0316|consen 156 HEIVAGSVDGTVRTYDIRKGTLSSD--------YFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETG------------ 215 (307)
T ss_pred cEEEeeccCCcEEEEEeecceeehh--------hcCCcceeEEecCCCCEEEEeeccceeeecccchh------------
Confidence 6899999999999999999886432 3345788999999998 5688888864 444433
Q ss_pred ccCCCccccccccceEEE--EEEeccCCccEeeecceeEEEEeecCCCCCCCCCCC
Q 000722 356 SSLVPPQVLAHHKKLRVY--CMVAHSLQPHLVATGTNVGVIISEFDPRSLPAVAPL 409 (1331)
Q Consensus 356 ~~~~~~~~l~~h~~~~I~--~la~sp~~~~lLAtGs~DG~Il~VWDlr~~p~i~~~ 409 (1331)
+.+..+.+|.. .=+ ...++. ....+++|+.||.| ++||+.....+..+
T Consensus 216 ---klL~sYkGhkn-~eykldc~l~q-sdthV~sgSEDG~V-y~wdLvd~~~~sk~ 265 (307)
T KOG0316|consen 216 ---KLLKSYKGHKN-MEYKLDCCLNQ-SDTHVFSGSEDGKV-YFWDLVDETQISKL 265 (307)
T ss_pred ---HHHHHhccccc-ceeeeeeeecc-cceeEEeccCCceE-EEEEeccceeeeee
Confidence 22445566655 222 223333 45679999999999 89999765554444
No 73
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.84 E-value=7.7e-21 Score=234.62 Aligned_cols=305 Identities=13% Similarity=0.146 Sum_probs=223.7
Q ss_pred cccC-CCcEEEEEeecCCceeEeec--CCCceeeeccccceEEeeeccCCcccchhhhhhhhhhcccccccCCCCccccc
Q 000722 7 FRPT-NDKIVKIQLHPTHPWLVTAD--ASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMR 83 (1331)
Q Consensus 7 L~gH-s~~V~~lafSPdg~~LaSgs--~DGtV~VWD~~tg~~i~s~~~~~~~~i~~vspdg~~Lasgs~d~~g~~l~~l~ 83 (1331)
+-+| ...|.+++.||+|..++||+ .||.++||+.+. .+.
T Consensus 8 wv~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~--vl~------------------------------------ 49 (942)
T KOG0973|consen 8 WVNHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDP--VLD------------------------------------ 49 (942)
T ss_pred ccccCCeeEEEEEecCCceeEecCCccccccceeecccc--ccc------------------------------------
Confidence 3445 45799999999999999999 899999999652 111
Q ss_pred CCceeEEeeecchhhHHHHhhhccccccCCcccccccccccCCCCCCCCceEEEEEeeccee-Eeeeec----------c
Q 000722 84 GGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVT----------M 152 (1331)
Q Consensus 84 gg~V~sVaf~DgtIrvWdl~tg~~l~~~~~~~~~~~~~~V~svafspdg~~lLasgs~d~iI-vwDl~t----------~ 152 (1331)
....|+..-.+ .......|...|+|+.|+|||+ +|++|++|+++ +|.... +
T Consensus 50 ------------~~~~~~~~l~k-----~l~~m~~h~~sv~CVR~S~dG~-~lAsGSDD~~v~iW~~~~~~~~~~fgs~g 111 (942)
T KOG0973|consen 50 ------------EKEEKNENLPK-----HLCTMDDHDGSVNCVRFSPDGS-YLASGSDDRLVMIWERAEIGSGTVFGSTG 111 (942)
T ss_pred ------------hhhhhhcccch-----hheeeccccCceeEEEECCCCC-eEeeccCcceEEEeeecccCCcccccccc
Confidence 11112211000 1122233377899999999998 99999999988 886652 0
Q ss_pred ------cCCCCCccccccccceeeehhhcccCCCcceEeecCCCceeeeeehhhheeehhhcCCCccchhhhhHhhhccc
Q 000722 153 ------RGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSG 226 (1331)
Q Consensus 153 ------~~~~i~~~~~h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~~~v~~~~~gH~~~V~~vawf~~spd 226 (1331)
+.+.+..+.+|...|..++| +|++.++++++.|++|.|||..+.++++.+. +|.+.|-.+. +.|-
T Consensus 112 ~~~~vE~wk~~~~l~~H~~DV~Dv~W-----sp~~~~lvS~s~DnsViiwn~~tF~~~~vl~-~H~s~VKGvs---~DP~ 182 (942)
T KOG0973|consen 112 GAKNVESWKVVSILRGHDSDVLDVNW-----SPDDSLLVSVSLDNSVIIWNAKTFELLKVLR-GHQSLVKGVS---WDPI 182 (942)
T ss_pred cccccceeeEEEEEecCCCccceecc-----CCCccEEEEecccceEEEEccccceeeeeee-cccccccceE---ECCc
Confidence 01234567889999999999 7899999999999999999999999999887 9999999998 6999
Q ss_pred cEEEeecCCCceEEEEeccCCCccccccccceeeeccCcEEEEEechhccCCCcEEEeec----CceeEeeeccchhhhc
Q 000722 227 EALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGA----DKTLAIWDTVSFKELR 302 (1331)
Q Consensus 227 g~lLaSgs~DgtIrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~----Dg~IrIWDl~t~~~l~ 302 (1331)
|++|+|-+.|++|+||+..+....+.+...+.-..-...+..+.|+| ||++|++.-. -.++.|.+-.+++.-.
T Consensus 183 Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSP---DG~~las~nA~n~~~~~~~IieR~tWk~~~ 259 (942)
T KOG0973|consen 183 GKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSP---DGHHLASPNAVNGGKSTIAIIERGTWKVDK 259 (942)
T ss_pred cCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCC---CcCeecchhhccCCcceeEEEecCCceeee
Confidence 99999999999999999776554443222222112234578899999 9999998743 4467777766555433
Q ss_pred ccCCCCcccccccccccCCCCCC------C---------c--ee-eeeecce--eeeeecCccccccccccccccCCCcc
Q 000722 303 RIKPVPKLACHSVASWCHPRAPN------L---------D--IL-TCVKDSH--IWAIEHPTYSALTRPLCELSSLVPPQ 362 (1331)
Q Consensus 303 ~~~~~~~l~~H~~~V~svafspd------g---------~--lL-a~s~Dg~--IWdl~~~~~~~l~~~~~~~~~~~~~~ 362 (1331)
.+.||..++.++.|+|. . . ++ +||.|+. ||..... +|+.
T Consensus 260 ------~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~---------------RPl~ 318 (942)
T KOG0973|consen 260 ------DLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALP---------------RPLF 318 (942)
T ss_pred ------eeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCC---------------Cchh
Confidence 37899999999999873 1 1 33 4678886 7987532 2332
Q ss_pred ccccccceEEEEEEeccCCccEeeecceeEEEEeecCCCC
Q 000722 363 VLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPRS 402 (1331)
Q Consensus 363 ~l~~h~~~~I~~la~sp~~~~lLAtGs~DG~Il~VWDlr~ 402 (1331)
....-....|..+.|+| +|..|..++.||.| .++...+
T Consensus 319 vi~~lf~~SI~DmsWsp-dG~~LfacS~DGtV-~~i~Fee 356 (942)
T KOG0973|consen 319 VIHNLFNKSIVDMSWSP-DGFSLFACSLDGTV-ALIHFEE 356 (942)
T ss_pred hhhhhhcCceeeeeEcC-CCCeEEEEecCCeE-EEEEcch
Confidence 22222233899999999 68889999999998 5777654
No 74
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.84 E-value=1.6e-21 Score=214.88 Aligned_cols=275 Identities=15% Similarity=0.207 Sum_probs=210.9
Q ss_pred ccccccCCCcEEEEEeecCC-ceeEeecCCCceeeeccccceEEeeeccCCcccchhhhhhhhhhcccccccCCCCcccc
Q 000722 4 LKAFRPTNDKIVKIQLHPTH-PWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAM 82 (1331)
Q Consensus 4 l~~L~gHs~~V~~lafSPdg-~~LaSgs~DGtV~VWD~~tg~~i~s~~~~~~~~i~~vspdg~~Lasgs~d~~g~~l~~l 82 (1331)
+..|.||.+.|.|++=||.. ..++||+.||.|+|||+....++.+|+.|.
T Consensus 59 v~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~----------------------------- 109 (433)
T KOG0268|consen 59 VGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHE----------------------------- 109 (433)
T ss_pred hhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeeccc-----------------------------
Confidence 45689999999999999987 699999999999999999999999998653
Q ss_pred cCCceeEEee---------ecchhhHHHHhhhccccccCCcccccccccccCCCCCCCCceEEEEEeecceeEeeeeccc
Q 000722 83 RGGSVKQVNF---------YDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFLDLVTMR 153 (1331)
Q Consensus 83 ~gg~V~sVaf---------~DgtIrvWdl~tg~~l~~~~~~~~~~~~~~V~svafspdg~~lLasgs~d~iIvwDl~t~~ 153 (1331)
|.|+++++ .|.+|+.|.+... +....+..+.+..+.-+..+. .+++|+.+ +-+||.+...
T Consensus 110 --G~V~Gi~v~~~~~~tvgdDKtvK~wk~~~~-------p~~tilg~s~~~gIdh~~~~~-~FaTcGe~-i~IWD~~R~~ 178 (433)
T KOG0268|consen 110 --GLVRGICVTQTSFFTVGDDKTVKQWKIDGP-------PLHTILGKSVYLGIDHHRKNS-VFATCGEQ-IDIWDEQRDN 178 (433)
T ss_pred --CceeeEEecccceEEecCCcceeeeeccCC-------cceeeeccccccccccccccc-cccccCce-eeecccccCC
Confidence 33444333 6889999987653 112222245566666666565 77877754 4479887533
Q ss_pred CCCCCccccccccceeeehhhcccCCCcceEeecCCCceeeeeehhhheeehhhcCCCccchhhhhHhhhccccEEEeec
Q 000722 154 GRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSG 233 (1331)
Q Consensus 154 ~~~i~~~~~h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSg 233 (1331)
.+..+....+.|.|+.|+|. ....|++|..|+.|.|||++++.+++.+. -...-+.|+| +|++..|++|
T Consensus 179 --Pv~smswG~Dti~svkfNpv----ETsILas~~sDrsIvLyD~R~~~Pl~KVi--~~mRTN~Isw---nPeafnF~~a 247 (433)
T KOG0268|consen 179 --PVSSMSWGADSISSVKFNPV----ETSILASCASDRSIVLYDLRQASPLKKVI--LTMRTNTICW---NPEAFNFVAA 247 (433)
T ss_pred --ccceeecCCCceeEEecCCC----cchheeeeccCCceEEEecccCCccceee--eeccccceec---Cccccceeec
Confidence 45567777889999999552 34578888899999999999998887764 3445566774 6788899999
Q ss_pred CCCceEEEEeccCCCccccccccceeeeccCcEEEEEechhccCCCcEEEeecCceeEeeeccchhhhcccCCCCccccc
Q 000722 234 GSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACH 313 (1331)
Q Consensus 234 s~DgtIrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H 313 (1331)
+.|..+..+|++.-+ .|.....+|...|.+++|+| .|+-|++||.|++||||..+.+...... ....
T Consensus 248 ~ED~nlY~~DmR~l~-----~p~~v~~dhvsAV~dVdfsp---tG~EfvsgsyDksIRIf~~~~~~SRdiY-----htkR 314 (433)
T KOG0268|consen 248 NEDHNLYTYDMRNLS-----RPLNVHKDHVSAVMDVDFSP---TGQEFVSGSYDKSIRIFPVNHGHSRDIY-----HTKR 314 (433)
T ss_pred cccccceehhhhhhc-----ccchhhcccceeEEEeccCC---CcchhccccccceEEEeecCCCcchhhh-----hHhh
Confidence 999999999998754 35666789999999999999 8999999999999999999876643221 1122
Q ss_pred ccccccCCCCCCCcee-eeeecce--eeeeec
Q 000722 314 SVASWCHPRAPNLDIL-TCVKDSH--IWAIEH 342 (1331)
Q Consensus 314 ~~~V~svafspdg~lL-a~s~Dg~--IWdl~~ 342 (1331)
...|.|+.||-|.+++ +||.|+. +|....
T Consensus 315 Mq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~A 346 (433)
T KOG0268|consen 315 MQHVFCVKYSMDSKYIISGSDDGNVRLWKAKA 346 (433)
T ss_pred hheeeEEEEeccccEEEecCCCcceeeeecch
Confidence 3568899999999976 6667764 787653
No 75
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.84 E-value=3.8e-19 Score=210.76 Aligned_cols=291 Identities=12% Similarity=0.077 Sum_probs=226.9
Q ss_pred ccccCCcceeeeeecccccCCCCCC-----cc---cCCCcccccCCCCCCcchhhhcccceEEEcCCceEEEEeecCCCc
Q 000722 799 RIKLRPPMLQVVRLASFQHAASVPP-----FL---TMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVAVTRFPTEQ 870 (1331)
Q Consensus 799 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~ 870 (1331)
-+++.+|..-+||-..|.---.+.+ -+ -++||+++++=|..++|++.+|+++ ++|+.+| ++
T Consensus 679 Ll~~~VPn~yfvRk~~~d~ed~~ee~~i~~~~~~~pLrdFvgle~Cd~~TRkaml~FSfy----------vtiG~MD-~A 747 (1416)
T KOG3617|consen 679 LLSVSVPNFYFVRKSGWDEEDNREERTIGKTLVAKPLRDFVGLENCDESTRKAMLDFSFY----------VTIGSMD-AA 747 (1416)
T ss_pred eeeeecCceEEEecccccccccccccccchhhhhhhHHHhcCccccCHHHHHhhhceeEE----------EEeccHH-HH
Confidence 3677788877788666654333333 11 1789999999999999999999999 9999999 99
Q ss_pred cCCCCCeEEEeeeccEEeeehhhhhhhhcccCCCcceee-------------------eeccc-----------------
Q 000722 871 KRPIGPLVVVGVKDGVLWLIDRYMCAHALSLSHPGIRCR-------------------CLAAY----------------- 914 (1331)
Q Consensus 871 ~~~~~~~~~~g~~~~~~~~~d~~~~~~~~~l~~~~~~~~-------------------~~~~~----------------- 914 (1331)
+|+++-|.-=.||+|+.-||-+..++.+..+|+..++-. +|++.
T Consensus 748 fksI~~IkS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieLgMlEeA~~lYr~ck 827 (1416)
T KOG3617|consen 748 FKSIQFIKSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIELGMLEEALILYRQCK 827 (1416)
T ss_pred HHHHHHHhhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHHhhHHHHHHHHHHHH
Confidence 999998877778999999999999999999988777643 22221
Q ss_pred ------------CCchhhhHHHhhhcccc----chhHHHHHhhcccccccccCCCcccceeeeeccccchHHHHHHhhhh
Q 000722 915 ------------GDSVSAVKWASRLGREH----HDDLAQFMLGMGYATEALHLPGISKRLEFDLAMQSNDLKRALQCLIT 978 (1331)
Q Consensus 915 ------------~~~~~a~~~~~~i~~~~----~~~~a~fl~~~g~~e~Al~~~~ds~~~~f~la~~~g~l~~a~~~~~~ 978 (1331)
|.|++|.++++.-++.| |++.|+|||..|-.+-||+.++.+..|+||+-..+-+.--+++ +|
T Consensus 828 R~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e--~Y 905 (1416)
T KOG3617|consen 828 RYDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIE--QY 905 (1416)
T ss_pred HHHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHH--HH
Confidence 77777777777766655 6777777777777777777777777777777766653333332 23
Q ss_pred cccccccCCCCCCCChhhhcccccchhhHHHHHHHHHHHHHHHHhhhhccccccchHHHHHHHHHHHhcccccccccccc
Q 000722 979 MSNSRDIGQDHPGLDLNDILTLTTKKENIVEAVQGIVKFAKEFLDLIDAADATGQANIAREALKRLAAAGSVKGALQGHE 1058 (1331)
Q Consensus 979 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~~~al~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 1058 (1331)
+-..++. ++-+|| |++-.++|+.+-|...|..+ . |
T Consensus 906 v~~~~d~------------------------------~L~~WW---gqYlES~GemdaAl~~Y~~A---~---------D 940 (1416)
T KOG3617|consen 906 VRRKRDE------------------------------SLYSWW---GQYLESVGEMDAALSFYSSA---K---------D 940 (1416)
T ss_pred HHhccch------------------------------HHHHHH---HHHHhcccchHHHHHHHHHh---h---------h
Confidence 2222221 234788 99999999999999999999 4 8
Q ss_pred cccchhhhcccccchhhhhhhHHHHhhccChhhhhhhh----hcCchHHHHHHhhhhhhHHHHHHhhhccCCCcHHHHHH
Q 000722 1059 LRGLALRLANHGELTRLSGLVTNLISLGLGREAAFSAA----ILGDNALMEKAWQDTGMLAEAVLHAHAHGRPSLKNLVE 1134 (1331)
Q Consensus 1059 ~~~l~ll~~~~g~~~~l~~l~~~~~~~~~~~~~af~~~----~lgd~~~~~~~l~~~~~~~~A~~~A~~~~~~~~~~~~~ 1134 (1331)
+-+++.+.|..|+.++...+ |.+.|+. .+.|+.+ --||+.++|+.+-++.-+.-|++++|.++ +++-
T Consensus 941 ~fs~VrI~C~qGk~~kAa~i---A~esgd~-AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd---~~d~-- 1011 (1416)
T KOG3617|consen 941 YFSMVRIKCIQGKTDKAARI---AEESGDK-AACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKEND---MKDR-- 1011 (1416)
T ss_pred hhhheeeEeeccCchHHHHH---HHhcccH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcC---HHHH--
Confidence 88999999999999988877 9999998 8889965 46889999999999999999999999999 4332
Q ss_pred HHHHHHhhhccCCCCccchhHHHHHh
Q 000722 1135 AWNKMLQKEVDHTPTAKTDAAAAFLA 1160 (1331)
Q Consensus 1135 ~w~~~l~~~~~~~~~~~~~~~~~~~~ 1160 (1331)
+|+ ....+.|+.++.||.||-+
T Consensus 1012 L~n----lal~s~~~d~v~aArYyEe 1033 (1416)
T KOG3617|consen 1012 LAN----LALMSGGSDLVSAARYYEE 1033 (1416)
T ss_pred HHH----HHhhcCchhHHHHHHHHHH
Confidence 454 3456789999999999954
No 76
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.83 E-value=1.2e-20 Score=215.44 Aligned_cols=275 Identities=16% Similarity=0.254 Sum_probs=207.9
Q ss_pred CCcEEEEEeecCCceeEeecCCCceeeeccccceEEeeeccCCcccchhhhhhhhhhcccccccCCCCcccccCCceeEE
Q 000722 11 NDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRGGSVKQV 90 (1331)
Q Consensus 11 s~~V~~lafSPdg~~LaSgs~DGtV~VWD~~tg~~i~s~~~~~~~~i~~vspdg~~Lasgs~d~~g~~l~~l~gg~V~sV 90 (1331)
.+.|.+++|+|..++=+.....-.|.||+..+...++++.
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~~k~~s---------------------------------------- 65 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSVRKTFS---------------------------------------- 65 (487)
T ss_pred cCcceeEecCCCCCCceEEecccEEEEEecchhhhhhhHH----------------------------------------
Confidence 4789999999988743333345679999987654444332
Q ss_pred eeecchhhHHHHhhhccccccCCcccccccccccCCCCCCCCceEEEEEeeccee-EeeeecccCCCCCcccccccccee
Q 000722 91 NFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQELDNKSLVC 169 (1331)
Q Consensus 91 af~DgtIrvWdl~tg~~l~~~~~~~~~~~~~~V~svafspdg~~lLasgs~d~iI-vwDl~t~~~~~i~~~~~h~~~V~~ 169 (1331)
.+...|++++|..||+ ++++|...+.+ ++|.++. ..+..+..|..++..
T Consensus 66 ---------------------------rFk~~v~s~~fR~DG~-LlaaGD~sG~V~vfD~k~r--~iLR~~~ah~apv~~ 115 (487)
T KOG0310|consen 66 ---------------------------RFKDVVYSVDFRSDGR-LLAAGDESGHVKVFDMKSR--VILRQLYAHQAPVHV 115 (487)
T ss_pred ---------------------------hhccceeEEEeecCCe-EEEccCCcCcEEEeccccH--HHHHHHhhccCceeE
Confidence 0133466788889998 99999988888 7796652 234567899999999
Q ss_pred eehhhcccCCCcceEeecCCCceeeeeehhhheeehhhcCCCccchhhhhHhhhccccEEEeecCCCceEEEEeccCCCc
Q 000722 170 MEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQD 249 (1331)
Q Consensus 170 Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrVWDl~tg~~ 249 (1331)
+.|+| .++..+++|++|+.+++||+.+...+..+. +|+.+|.|.+| .+.++.+++|||.||+||+||.+....
T Consensus 116 ~~f~~----~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~-~htDYVR~g~~--~~~~~hivvtGsYDg~vrl~DtR~~~~ 188 (487)
T KOG0310|consen 116 TKFSP----QDNTMLVSGSDDKVVKYWDLSTAYVQAELS-GHTDYVRCGDI--SPANDHIVVTGSYDGKVRLWDTRSLTS 188 (487)
T ss_pred EEecc----cCCeEEEecCCCceEEEEEcCCcEEEEEec-CCcceeEeecc--ccCCCeEEEecCCCceEEEEEeccCCc
Confidence 99965 367789999999999999999888654665 99999999994 466677999999999999999987631
Q ss_pred cccccccceeeeccCcEEEEEechhccCCCcEEEeecCceeEeeeccchhhhcccCCCCcccccccccccCCCCCCCc-e
Q 000722 250 SRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLD-I 328 (1331)
Q Consensus 250 ~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg~-l 328 (1331)
.... -.|..+|.++.|-| .|.+|++++ ...|+|||+.+|..+-. .+..|...|+|+.+..++. +
T Consensus 189 -----~v~e-lnhg~pVe~vl~lp---sgs~iasAg-Gn~vkVWDl~~G~qll~-----~~~~H~KtVTcL~l~s~~~rL 253 (487)
T KOG0310|consen 189 -----RVVE-LNHGCPVESVLALP---SGSLIASAG-GNSVKVWDLTTGGQLLT-----SMFNHNKTVTCLRLASDSTRL 253 (487)
T ss_pred -----eeEE-ecCCCceeeEEEcC---CCCEEEEcC-CCeEEEEEecCCceehh-----hhhcccceEEEEEeecCCceE
Confidence 1222 34899999999999 788888887 46899999996553322 1445999999999998876 7
Q ss_pred eeeeecce--eeeeecCccccccccccccccCCCccccccccceEEEEEEeccCCccEeeecceeEEEE
Q 000722 329 LTCVKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVII 395 (1331)
Q Consensus 329 La~s~Dg~--IWdl~~~~~~~l~~~~~~~~~~~~~~~l~~h~~~~I~~la~sp~~~~lLAtGs~DG~Il 395 (1331)
|++|-|++ +||+.+.. .+..+... . +|.+++.+| ++..++.|-.+|.+.
T Consensus 254 lS~sLD~~VKVfd~t~~K---------------vv~s~~~~-~-pvLsiavs~-dd~t~viGmsnGlv~ 304 (487)
T KOG0310|consen 254 LSGSLDRHVKVFDTTNYK---------------VVHSWKYP-G-PVLSIAVSP-DDQTVVIGMSNGLVS 304 (487)
T ss_pred eecccccceEEEEccceE---------------EEEeeecc-c-ceeeEEecC-CCceEEEecccceee
Confidence 79999996 78855321 11222222 2 799999999 566699999999973
No 77
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.83 E-value=7.6e-21 Score=217.14 Aligned_cols=240 Identities=19% Similarity=0.284 Sum_probs=191.9
Q ss_pred ccccccCCCcEEEEEeecCCceeEeecCCCceeeeccccceEEeeeccCCcccchhhhhhhhhhcccccccCCCCccccc
Q 000722 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMR 83 (1331)
Q Consensus 4 l~~L~gHs~~V~~lafSPdg~~LaSgs~DGtV~VWD~~tg~~i~s~~~~~~~~i~~vspdg~~Lasgs~d~~g~~l~~l~ 83 (1331)
.+++.-..+.|.++.|-.||++|+.|+..|.|+|+|+.+...++.+..|
T Consensus 61 ~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah------------------------------- 109 (487)
T KOG0310|consen 61 RKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAH------------------------------- 109 (487)
T ss_pred hhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhc-------------------------------
Confidence 3455666788999999999999999999999999997654444444322
Q ss_pred CCceeEEeeecchhhHHHHhhhccccccCCcccccccccccCCCCCCCCceEEEEEeeccee-EeeeecccCCCCCcccc
Q 000722 84 GGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQEL 162 (1331)
Q Consensus 84 gg~V~sVaf~DgtIrvWdl~tg~~l~~~~~~~~~~~~~~V~svafspdg~~lLasgs~d~iI-vwDl~t~~~~~i~~~~~ 162 (1331)
..++..+.|+|+++..|++|++|+++ .||+.+... ...+.+
T Consensus 110 ------------------------------------~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v--~~~l~~ 151 (487)
T KOG0310|consen 110 ------------------------------------QAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYV--QAELSG 151 (487)
T ss_pred ------------------------------------cCceeEEEecccCCeEEEecCCCceEEEEEcCCcEE--EEEecC
Confidence 33455677899988899999999999 568887642 346789
Q ss_pred ccccceeeehhhcccCCCcceEeecCCCceeeeeehhhh-eeehhhcCCCccchhhhhHhhhccccEEEeecCCCceEEE
Q 000722 163 DNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISW-KLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLIL 241 (1331)
Q Consensus 163 h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~-~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrV 241 (1331)
|.++|+|.+|+| .++..+++||.||+||+||.+.. ..+..+ .|..+|..+. +-|.|.+|++++. ..|+|
T Consensus 152 htDYVR~g~~~~----~~~hivvtGsYDg~vrl~DtR~~~~~v~el--nhg~pVe~vl---~lpsgs~iasAgG-n~vkV 221 (487)
T KOG0310|consen 152 HTDYVRCGDISP----ANDHIVVTGSYDGKVRLWDTRSLTSRVVEL--NHGCPVESVL---ALPSGSLIASAGG-NSVKV 221 (487)
T ss_pred CcceeEeecccc----CCCeEEEecCCCceEEEEEeccCCceeEEe--cCCCceeeEE---EcCCCCEEEEcCC-CeEEE
Confidence 999999999975 35779999999999999999876 555565 6999999997 7788889998774 58999
Q ss_pred EeccCCCccccccccceeeeccCcEEEEEechhccCCCcEEEeecCceeEeeeccchhhhcccCCCCcccccccccccCC
Q 000722 242 WSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHP 321 (1331)
Q Consensus 242 WDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~sva 321 (1331)
||+.+|... ...+..|...|+|+++.. ++..|++||-|+.|++||+.+.+.+..+ .-.++|.+++
T Consensus 222 WDl~~G~ql-----l~~~~~H~KtVTcL~l~s---~~~rLlS~sLD~~VKVfd~t~~Kvv~s~-------~~~~pvLsia 286 (487)
T KOG0310|consen 222 WDLTTGGQL-----LTSMFNHNKTVTCLRLAS---DSTRLLSGSLDRHVKVFDTTNYKVVHSW-------KYPGPVLSIA 286 (487)
T ss_pred EEecCCcee-----hhhhhcccceEEEEEeec---CCceEeecccccceEEEEccceEEEEee-------ecccceeeEE
Confidence 999966432 112345999999999998 7899999999999999999888877663 3457788999
Q ss_pred CCCCCcee-eeeeccee
Q 000722 322 RAPNLDIL-TCVKDSHI 337 (1331)
Q Consensus 322 fspdg~lL-a~s~Dg~I 337 (1331)
.+|+++.+ +|..+|.+
T Consensus 287 vs~dd~t~viGmsnGlv 303 (487)
T KOG0310|consen 287 VSPDDQTVVIGMSNGLV 303 (487)
T ss_pred ecCCCceEEEeccccee
Confidence 99998855 66677764
No 78
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=4e-20 Score=219.14 Aligned_cols=236 Identities=18% Similarity=0.242 Sum_probs=194.8
Q ss_pred ccccCCCCCCCCceEEEEEeeccee-EeeeecccCCCCCcccc-ccccceeeehhhcccCCCcceEeecCCCceeeeeeh
Q 000722 121 SGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQEL-DNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSM 198 (1331)
Q Consensus 121 ~~V~svafspdg~~lLasgs~d~iI-vwDl~t~~~~~i~~~~~-h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl 198 (1331)
..|+++.|+++|. .|++|..++.+ +||..+.+ .+..+.. |...|.|++| ++..+.+|+.|+.|..+|+
T Consensus 218 ~~vtSv~ws~~G~-~LavG~~~g~v~iwD~~~~k--~~~~~~~~h~~rvg~laW-------~~~~lssGsr~~~I~~~dv 287 (484)
T KOG0305|consen 218 ELVTSVKWSPDGS-HLAVGTSDGTVQIWDVKEQK--KTRTLRGSHASRVGSLAW-------NSSVLSSGSRDGKILNHDV 287 (484)
T ss_pred CceEEEEECCCCC-EEEEeecCCeEEEEehhhcc--ccccccCCcCceeEEEec-------cCceEEEecCCCcEEEEEE
Confidence 4577888999998 88888888877 89988744 4556666 8999999999 5888999999999999999
Q ss_pred hhheeehhhcCCCccchhhhhHhhhccccEEEeecCCCceEEEEeccCCCccccccccceeeeccCcEEEEEechhccCC
Q 000722 199 ISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGS 278 (1331)
Q Consensus 199 ~t~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg 278 (1331)
+..+.......+|...|..+. .++++.+|++|+.|+.+.|||..... +...+..|...|..++|+|. ..
T Consensus 288 R~~~~~~~~~~~H~qeVCgLk---ws~d~~~lASGgnDN~~~Iwd~~~~~------p~~~~~~H~aAVKA~awcP~--q~ 356 (484)
T KOG0305|consen 288 RISQHVVSTLQGHRQEVCGLK---WSPDGNQLASGGNDNVVFIWDGLSPE------PKFTFTEHTAAVKALAWCPW--QS 356 (484)
T ss_pred ecchhhhhhhhcccceeeeeE---ECCCCCeeccCCCccceEeccCCCcc------ccEEEeccceeeeEeeeCCC--cc
Confidence 987665553348999999999 58999999999999999999995433 55668999999999999995 56
Q ss_pred CcEEEee--cCceeEeeeccchhhhcccCCCCcccccccccccCCCCCCCc-eeeee--ecc--eeeeeecCcccccccc
Q 000722 279 PQLITIG--ADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLD-ILTCV--KDS--HIWAIEHPTYSALTRP 351 (1331)
Q Consensus 279 ~~LaSgs--~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg~-lLa~s--~Dg--~IWdl~~~~~~~l~~~ 351 (1331)
.+|++|+ .|++|++||..+++.++. ..-...|+++.|++..+ ++++. .++ +||++.+.
T Consensus 357 ~lLAsGGGs~D~~i~fwn~~~g~~i~~-------vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~-------- 421 (484)
T KOG0305|consen 357 GLLATGGGSADRCIKFWNTNTGARIDS-------VDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSM-------- 421 (484)
T ss_pred CceEEcCCCcccEEEEEEcCCCcEecc-------cccCCceeeEEEcCCCCEEEEecCCCCCcEEEEecccc--------
Confidence 7899876 599999999999998776 34457899999999975 66432 233 58988752
Q ss_pred ccccccCCCccccccccceEEEEEEeccCCccEeeecceeEEEEeecCCCC
Q 000722 352 LCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPRS 402 (1331)
Q Consensus 352 ~~~~~~~~~~~~l~~h~~~~I~~la~sp~~~~lLAtGs~DG~Il~VWDlr~ 402 (1331)
..+..+.+|.. +|..++++| ++..+++|+.|.++ ++|++-.
T Consensus 422 -------~~~~~l~gH~~-RVl~la~SP-dg~~i~t~a~DETl-rfw~~f~ 462 (484)
T KOG0305|consen 422 -------KLVAELLGHTS-RVLYLALSP-DGETIVTGAADETL-RFWNLFD 462 (484)
T ss_pred -------ceeeeecCCcc-eeEEEEECC-CCCEEEEecccCcE-EeccccC
Confidence 34567888999 999999999 57789999999998 9999854
No 79
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.83 E-value=2.4e-19 Score=209.84 Aligned_cols=433 Identities=14% Similarity=0.172 Sum_probs=266.1
Q ss_pred ccccCCCcEEEEEeecCCceeEeec--CCCceeeeccccceEEeeeccCCcccchhhh--hhhhhhcccccccCCCCccc
Q 000722 6 AFRPTNDKIVKIQLHPTHPWLVTAD--ASDHVSVWNWEHRQVIYELKAGGVDQRRLVG--AKLEKLAEGELEHKGKPTEA 81 (1331)
Q Consensus 6 ~L~gHs~~V~~lafSPdg~~LaSgs--~DGtV~VWD~~tg~~i~s~~~~~~~~i~~vs--pdg~~Lasgs~d~~g~~l~~ 81 (1331)
.+..|...++|++||++|+|++||- ....++||++.....+.+|..|. -.+.+++ |.++++++.+..
T Consensus 73 lvnssRk~~t~vAfS~~GryvatGEcG~~pa~kVw~la~h~vVAEfvdHK-Y~vtcvaFsp~~kyvvSVGsQ-------- 143 (1080)
T KOG1408|consen 73 LVNSSRKPLTCVAFSQNGRYVATGECGRTPASKVWSLAFHGVVAEFVDHK-YNVTCVAFSPGNKYVVSVGSQ-------- 143 (1080)
T ss_pred eecccCcceeEEEEcCCCcEEEecccCCCccceeeeeccccchhhhhhcc-ccceeeeecCCCcEEEeeccc--------
Confidence 3566778999999999999999985 66789999999888888887443 3444443 555555443211
Q ss_pred ccCCceeEEeeecchhhHHHHhhhccccccCCcccccccccccCCCCCCCCceEEEEEeecceeEeeeecccCC--CCCc
Q 000722 82 MRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFLDLVTMRGR--DIPK 159 (1331)
Q Consensus 82 l~gg~V~sVaf~DgtIrvWdl~tg~~l~~~~~~~~~~~~~~V~svafspdg~~lLasgs~d~iIvwDl~t~~~~--~i~~ 159 (1331)
.|-.|.+||+..+.. .........|..++|+.+|. ++++.+...+-+|.++.++.- .++.
T Consensus 144 -----------HDMIVnv~dWr~N~~------~asnkiss~Vsav~fsEdgS-YfvT~gnrHvk~wyl~~~~KykdpiPl 205 (1080)
T KOG1408|consen 144 -----------HDMIVNVNDWRVNSS------GASNKISSVVSAVAFSEDGS-YFVTSGNRHVKLWYLQIQSKYKDPIPL 205 (1080)
T ss_pred -----------cceEEEhhhhhhccc------ccccccceeEEEEEEccCCc-eeeeeeeeeEEEEEeeccccccCCccc
Confidence 577888998765532 22333467788999999998 888888888889976543310 0000
Q ss_pred c---------------------------------ccc----------cc-------cceeeehhhcccCCCcceEeecCC
Q 000722 160 Q---------------------------------ELD----------NK-------SLVCMEFLSRSAVGDVPLVAFGSS 189 (1331)
Q Consensus 160 ~---------------------------------~~h----------~~-------~V~~Vaf~P~s~Spdg~~LasGs~ 189 (1331)
. .+| .+ ..+||+. +.++|++|+.
T Consensus 206 ~gRs~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEFSsRRLLDKWVqcRTTnAnCIcV-------s~r~I~cgCa 278 (1080)
T KOG1408|consen 206 PGRSYFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEFSSRRLLDKWVQCRTTNANCICV-------SSRLIACGCA 278 (1080)
T ss_pred cchhhhccccccchhhhhhhcCcccccceEEEecccceeeechhhhhhhhhhhhccccceeee-------ecceEEEeec
Confidence 0 000 01 1123333 5789999999
Q ss_pred CceeeeeehhhheeehhhcCCCcc---------------------chhhhhHhhhccccEEEeecCCCceEEEEeccCCC
Q 000722 190 DGVIRVLSMISWKLVRRYTGGHKG---------------------SISCLMTFMASSGEALLVSGGSDGLLILWSADHGQ 248 (1331)
Q Consensus 190 DGtIrlWDl~t~~~v~~~~~gH~~---------------------~V~~vawf~~spdg~lLaSgs~DgtIrVWDl~tg~ 248 (1331)
+|.||+|+..+-..+.++...|.- .--+|+ +.|++...+|...-.|..++|||++.-+
T Consensus 279 ~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA-~~Fdet~~klscVYndhSlYvWDvrD~~ 357 (1080)
T KOG1408|consen 279 KGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIA-CQFDETTDKLSCVYNDHSLYVWDVRDVN 357 (1080)
T ss_pred cceeeecCcchhhhccccccccccccchhhcccccccccccCcccCCceeE-EEecCCCceEEEEEcCceEEEEeccccc
Confidence 999999998875544443222211 112222 2377777888888999999999999866
Q ss_pred ccccccccceeeeccCcEEEEEechh--c-c-----CCCcEEEeecCceeEeeeccchhhhccc----------C-C---
Q 000722 249 DSRELVPKLSLKAHDGGVVAVELSRV--M-G-----GSPQLITIGADKTLAIWDTVSFKELRRI----------K-P--- 306 (1331)
Q Consensus 249 ~~~~~~~~~~l~gH~~~V~svafsp~--~-~-----dg~~LaSgs~Dg~IrIWDl~t~~~l~~~----------~-~--- 306 (1331)
.+.. ...+--|...|+++.--|. + + -...+++++.|++||+||+..+..-..+ + +
T Consensus 358 kvgk---~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d 434 (1080)
T KOG1408|consen 358 KVGK---CSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYED 434 (1080)
T ss_pred cccc---eeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCcccc
Confidence 5433 3445678888888876651 0 0 1246899999999999999752211110 0 0
Q ss_pred -----------------CCcccccccccccCCCCCCCceeeeeecc---eeeeeecCccccccccccccccCCCcccccc
Q 000722 307 -----------------VPKLACHSVASWCHPRAPNLDILTCVKDS---HIWAIEHPTYSALTRPLCELSSLVPPQVLAH 366 (1331)
Q Consensus 307 -----------------~~~l~~H~~~V~svafspdg~lLa~s~Dg---~IWdl~~~~~~~l~~~~~~~~~~~~~~~l~~ 366 (1331)
.....+....+.+++.+|+|+.|+.|.-+ +||++.... ....+..
T Consensus 435 ~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~---------------~~~~~eA 499 (1080)
T KOG1408|consen 435 STQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELE---------------YTCFMEA 499 (1080)
T ss_pred CchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhh---------------hhhheec
Confidence 00111233468899999999999766443 488887532 2334567
Q ss_pred ccceEEEEEEeccC--CccEeeecceeEEEEeecCCCC-CCCCCCCCCCCCCCCcceEEEeeee-eeeeeeecccC----
Q 000722 367 HKKLRVYCMVAHSL--QPHLVATGTNVGVIISEFDPRS-LPAVAPLPTPSGSRDHSAVYIVERE-LKLVNFQLSSA---- 438 (1331)
Q Consensus 367 h~~~~I~~la~sp~--~~~lLAtGs~DG~Il~VWDlr~-~p~i~~~~t~s~~~~~s~~~~~~~~-l~l~~fq~~~~---- 438 (1331)
|.. .|.|+.++.. ...+||+++.|..| +|||... .....++...+. .-.++-|+-.+. .+.........
T Consensus 500 Hes-EilcLeyS~p~~~~kLLASasrdRlI-HV~Dv~rny~l~qtld~HSs-sITsvKFa~~gln~~MiscGADksimFr 576 (1080)
T KOG1408|consen 500 HES-EILCLEYSFPVLTNKLLASASRDRLI-HVYDVKRNYDLVQTLDGHSS-SITSVKFACNGLNRKMISCGADKSIMFR 576 (1080)
T ss_pred ccc-eeEEEeecCchhhhHhhhhccCCceE-EEEecccccchhhhhccccc-ceeEEEEeecCCceEEEeccCchhhhee
Confidence 777 8999999953 34689999999998 8999843 333333321111 112233333321 22221110000
Q ss_pred CCCCCCCCCCccccCCCCCCCCchhhHhhhccccccccCCCceeEEEEeeCCcEEEEEcCCCceeeEEeecceeEee
Q 000722 439 ANPSLGNNGSLSETGRLKGDLPDALQIKQIKKHISTPVPHDSYSILSVSSSGKYLAVVWPDIPYFSVYKVSDWSIVD 515 (1331)
Q Consensus 439 ~~~~lg~~~~ls~~G~~~~~~~e~l~v~~~~r~i~t~~~~e~~s~ls~SpdGrylaVv~~~~g~y~Iy~i~~~~~i~ 515 (1331)
.++. +.+|+ +..|. ...+.+...-.+.+-|+-+++ +....++.+.||.+.+.+++.
T Consensus 577 ~~qk-------~~~g~------------~f~r~-t~t~~ktTlYDm~Vdp~~k~v-~t~cQDrnirif~i~sgKq~k 632 (1080)
T KOG1408|consen 577 VNQK-------ASSGR------------LFPRH-TQTLSKTTLYDMAVDPTSKLV-VTVCQDRNIRIFDIESGKQVK 632 (1080)
T ss_pred hhcc-------ccCce------------ecccc-ccccccceEEEeeeCCCcceE-EEEecccceEEEeccccceee
Confidence 0000 00111 00110 011111221267889999999 555688999999998876654
No 80
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.83 E-value=1.2e-20 Score=200.77 Aligned_cols=275 Identities=17% Similarity=0.199 Sum_probs=206.3
Q ss_pred ccccccCCCcEEEEEeecCCceeEeecCCCceeeeccccceEEeeecc-CCcccchhhhhhhhhhcccccccCCCCcccc
Q 000722 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKA-GGVDQRRLVGAKLEKLAEGELEHKGKPTEAM 82 (1331)
Q Consensus 4 l~~L~gHs~~V~~lafSPdg~~LaSgs~DGtV~VWD~~tg~~i~s~~~-~~~~~i~~vspdg~~Lasgs~d~~g~~l~~l 82 (1331)
-+.+++|...|.+++|+.+|..|++|+.|+++.||+++..+....... +|.+.+..+. ....
T Consensus 13 ~r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~-------w~~~---------- 75 (313)
T KOG1407|consen 13 RRELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLC-------WDPK---------- 75 (313)
T ss_pred hHHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhhe-------eCCC----------
Confidence 377899999999999999999999999999999999987755555432 2322222221 1100
Q ss_pred cCCceeEEeeecchhhHHHHhhhccccccCCcccccccccccCCCCCCCCceEEEEEeecceeEeeeecccCCCCCcccc
Q 000722 83 RGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFLDLVTMRGRDIPKQEL 162 (1331)
Q Consensus 83 ~gg~V~sVaf~DgtIrvWdl~tg~~l~~~~~~~~~~~~~~V~svafspdg~~lLasgs~d~iIvwDl~t~~~~~i~~~~~ 162 (1331)
.......+..|.+||+||+..+++.......... + -+.|+|+|.++++..-+|.+..+|.++.+... ...
T Consensus 76 -~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~en-----i-~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~---~~~ 145 (313)
T KOG1407|consen 76 -HPDLFATASGDKTIRIWDIRSGKCTARIETKGEN-----I-NITWSPDGEYIAVGNKDDRITFIDARTYKIVN---EEQ 145 (313)
T ss_pred -CCcceEEecCCceEEEEEeccCcEEEEeeccCcc-----e-EEEEcCCCCEEEEecCcccEEEEEecccceee---hhc
Confidence 0112222236899999999999986533222211 2 25689999955555556666677887754321 222
Q ss_pred ccccceeeehhhcccCCCcceEeecCCCceeeeeehhhheeehhhcCCCccchhhhhHhhhccccEEEeecCCCceEEEE
Q 000722 163 DNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILW 242 (1331)
Q Consensus 163 h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrVW 242 (1331)
....+..+.| +.++++++..+..|.|.|.....-+.+..+. +|.....||. |+|+|++|++|+.|-.+.+|
T Consensus 146 ~~~e~ne~~w-----~~~nd~Fflt~GlG~v~ILsypsLkpv~si~-AH~snCicI~---f~p~GryfA~GsADAlvSLW 216 (313)
T KOG1407|consen 146 FKFEVNEISW-----NNSNDLFFLTNGLGCVEILSYPSLKPVQSIK-AHPSNCICIE---FDPDGRYFATGSADALVSLW 216 (313)
T ss_pred ccceeeeeee-----cCCCCEEEEecCCceEEEEeccccccccccc-cCCcceEEEE---ECCCCceEeeccccceeecc
Confidence 2456777888 4466777766677999999999889999997 9998777777 89999999999999999999
Q ss_pred eccCCCccccccccceeeeccCcEEEEEechhccCCCcEEEeecCceeEeeeccchhhhcccCCCCcccccccccccCCC
Q 000722 243 SADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPR 322 (1331)
Q Consensus 243 Dl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svaf 322 (1331)
|+..--|++. +..++-+|..+.|+. ++++|+++|.|..|-|=++.+|..+..+ .+.++...++|
T Consensus 217 D~~ELiC~R~------isRldwpVRTlSFS~---dg~~lASaSEDh~IDIA~vetGd~~~eI-------~~~~~t~tVAW 280 (313)
T KOG1407|consen 217 DVDELICERC------ISRLDWPVRTLSFSH---DGRMLASASEDHFIDIAEVETGDRVWEI-------PCEGPTFTVAW 280 (313)
T ss_pred ChhHhhhhee------eccccCceEEEEecc---CcceeeccCccceEEeEecccCCeEEEe-------eccCCceeEEe
Confidence 9987665554 678899999999998 9999999999999999999999877663 35566678999
Q ss_pred CCCCceee
Q 000722 323 APNLDILT 330 (1331)
Q Consensus 323 spdg~lLa 330 (1331)
+|...+|+
T Consensus 281 HPk~~LLA 288 (313)
T KOG1407|consen 281 HPKRPLLA 288 (313)
T ss_pred cCCCceee
Confidence 99998884
No 81
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.83 E-value=2.5e-20 Score=217.98 Aligned_cols=201 Identities=18% Similarity=0.326 Sum_probs=170.5
Q ss_pred cccccccCCCCCCCCceEEEEEeeccee-EeeeecccCCCCCccccccccceeeehhhcccCCCcceEeecCCCceeeee
Q 000722 118 NVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVL 196 (1331)
Q Consensus 118 ~~~~~V~svafspdg~~lLasgs~d~iI-vwDl~t~~~~~i~~~~~h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlW 196 (1331)
+|.++|+.+....+++ .|++++.|..+ +|+...+...+..++..|.++|.|+++. .++..++++|+.|+.|.+|
T Consensus 71 ~HsDWVNDiiL~~~~~-tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~----ak~~~lvaSgGLD~~IflW 145 (735)
T KOG0308|consen 71 HHSDWVNDIILCGNGK-TLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYI----AKNNELVASGGLDRKIFLW 145 (735)
T ss_pred hhHhHHhhHHhhcCCC-ceEEecCCceEEEeecccCcchhHhhhhcccchheeeeec----ccCceeEEecCCCccEEEE
Confidence 4477788888888887 77788877777 8988876556778889999999999994 4678899999999999999
Q ss_pred ehhhh--eeehhh--------cCCCccchhhhhHhhhccccEEEeecCCCceEEEEeccCCCccccccccceeeeccCcE
Q 000722 197 SMISW--KLVRRY--------TGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGV 266 (1331)
Q Consensus 197 Dl~t~--~~v~~~--------~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrVWDl~tg~~~~~~~~~~~l~gH~~~V 266 (1331)
|+.++ +.+.++ ..|+...|++++ -++.|..|++|+..+.+++||.++++.+- .+.||...|
T Consensus 146 Din~~~~~l~~s~n~~t~~sl~sG~k~siYSLA---~N~t~t~ivsGgtek~lr~wDprt~~kim------kLrGHTdNV 216 (735)
T KOG0308|consen 146 DINTGTATLVASFNNVTVNSLGSGPKDSIYSLA---MNQTGTIIVSGGTEKDLRLWDPRTCKKIM------KLRGHTDNV 216 (735)
T ss_pred EccCcchhhhhhccccccccCCCCCccceeeee---cCCcceEEEecCcccceEEecccccccee------eeeccccce
Confidence 99976 333322 237889999998 78889999999999999999999987543 378999999
Q ss_pred EEEEechhccCCCcEEEeecCceeEeeeccchhhhcccCCCCcccccccccccCCCCCCCc-eeeeeecceeeeee
Q 000722 267 VAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLD-ILTCVKDSHIWAIE 341 (1331)
Q Consensus 267 ~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg~-lLa~s~Dg~IWdl~ 341 (1331)
..+..+. +|..++++|.||+|++||+...+|+.+ +..|...||++..+|+-. +.+|+.|+.|+...
T Consensus 217 r~ll~~d---DGt~~ls~sSDgtIrlWdLgqQrCl~T------~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Td 283 (735)
T KOG0308|consen 217 RVLLVND---DGTRLLSASSDGTIRLWDLGQQRCLAT------YIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTD 283 (735)
T ss_pred EEEEEcC---CCCeEeecCCCceEEeeeccccceeee------EEeccCceEEEeeCCCcceEEecCCCCcEEecc
Confidence 9999998 999999999999999999999888877 788999999999999977 45899999876544
No 82
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.83 E-value=1.2e-19 Score=217.41 Aligned_cols=334 Identities=15% Similarity=0.170 Sum_probs=240.3
Q ss_pred ccccccCCCcEEEEEeecCCceeEeecCCCceeeeccccceEEeeeccCCcccchhhh--hhhhhhcccccccCCCCccc
Q 000722 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVG--AKLEKLAEGELEHKGKPTEA 81 (1331)
Q Consensus 4 l~~L~gHs~~V~~lafSPdg~~LaSgs~DGtV~VWD~~tg~~i~s~~~~~~~~i~~vs--pdg~~Lasgs~d~~g~~l~~ 81 (1331)
+.+|++|..+|+++.=+|--..++.|..+|+|.|+|++.++.+.+|+.. ...+..++ .||..+
T Consensus 195 v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d-~g~VtslSFrtDG~p~-------------- 259 (910)
T KOG1539|consen 195 VYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQD-WGRVTSLSFRTDGNPL-------------- 259 (910)
T ss_pred EEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEcc-ccceeEEEeccCCCee--------------
Confidence 5688999999999999999999999999999999999999999999832 22332222 222222
Q ss_pred ccCCceeEEeeecchhhHHHHhhhccccccCCcccccccccccCCCCCCCCceEEEEEeeccee-Ee--eeecccCCCCC
Q 000722 82 MRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FL--DLVTMRGRDIP 158 (1331)
Q Consensus 82 l~gg~V~sVaf~DgtIrvWdl~tg~~l~~~~~~~~~~~~~~V~svafspdg~~lLasgs~d~iI-vw--Dl~t~~~~~i~ 158 (1331)
....-..|.+.+||++..+.+ ......|.+.+....|.|..+ ++++.+.|... +| |...+..+.+.
T Consensus 260 ------las~~~~G~m~~wDLe~kkl~----~v~~nah~~sv~~~~fl~~ep-Vl~ta~~DnSlk~~vfD~~dg~pR~LR 328 (910)
T KOG1539|consen 260 ------LASGRSNGDMAFWDLEKKKLI----NVTRNAHYGSVTGATFLPGEP-VLVTAGADNSLKVWVFDSGDGVPRLLR 328 (910)
T ss_pred ------EEeccCCceEEEEEcCCCeee----eeeeccccCCcccceecCCCc-eEeeccCCCceeEEEeeCCCCcchhee
Confidence 221124688999999887664 233334466788888998776 77877777655 66 64444446666
Q ss_pred ccccccccceeeehhhcccCCCcceEeecCCCceeeeeehhhh-------e--------eehhh----------------
Q 000722 159 KQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISW-------K--------LVRRY---------------- 207 (1331)
Q Consensus 159 ~~~~h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~-------~--------~v~~~---------------- 207 (1331)
...+|..+..|+.|. ...|..+.+++.|++.+.+++... + .+..+
T Consensus 329 ~R~GHs~Pp~~irfy----~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~ 404 (910)
T KOG1539|consen 329 SRGGHSAPPSCIRFY----GSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFE 404 (910)
T ss_pred eccCCCCCchheeee----ccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecc
Confidence 778999999999995 357888999999998888766321 0 00000
Q ss_pred -----------------------------c----CCCc------cchhhhhHhhhccccEEEeecCCCceEEEEeccCCC
Q 000722 208 -----------------------------T----GGHK------GSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQ 248 (1331)
Q Consensus 208 -----------------------------~----~gH~------~~V~~vawf~~spdg~lLaSgs~DgtIrVWDl~tg~ 248 (1331)
. -.+. ..+++++ .++.|++.+.|+..|+|-+|++.+|-
T Consensus 405 ~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~---vs~CGNF~~IG~S~G~Id~fNmQSGi 481 (910)
T KOG1539|consen 405 NAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVC---VSFCGNFVFIGYSKGTIDRFNMQSGI 481 (910)
T ss_pred cchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEE---EeccCceEEEeccCCeEEEEEcccCe
Confidence 0 0111 2344444 78889999999999999999999986
Q ss_pred ccccccccceeeeccCcEEEEEechhccCCCcEEEeecCceeEeeeccchhhhcccCCCCcccccccccccCCCCCCCce
Q 000722 249 DSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDI 328 (1331)
Q Consensus 249 ~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg~l 328 (1331)
....+. .-..|.+.|++++... .++.+++++.||.+++||..+...+..+. -...+.++..+....+
T Consensus 482 ~r~sf~---~~~ah~~~V~gla~D~---~n~~~vsa~~~Gilkfw~f~~k~l~~~l~-------l~~~~~~iv~hr~s~l 548 (910)
T KOG1539|consen 482 HRKSFG---DSPAHKGEVTGLAVDG---TNRLLVSAGADGILKFWDFKKKVLKKSLR-------LGSSITGIVYHRVSDL 548 (910)
T ss_pred eecccc---cCccccCceeEEEecC---CCceEEEccCcceEEEEecCCcceeeeec-------cCCCcceeeeeehhhh
Confidence 544321 1258999999999986 67899999999999999998877554432 1223445556665555
Q ss_pred eee-eecc--eeeeeecCccccccccccccccCCCccccccccceEEEEEEeccCCccEeeecceeEEEEeecCCC
Q 000722 329 LTC-VKDS--HIWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPR 401 (1331)
Q Consensus 329 La~-s~Dg--~IWdl~~~~~~~l~~~~~~~~~~~~~~~l~~h~~~~I~~la~sp~~~~lLAtGs~DG~Il~VWDlr 401 (1331)
++. ..|- .++|..+. +-+..|.+|++ +|+.++||| ++..|++++.|+.| |+||+.
T Consensus 549 ~a~~~ddf~I~vvD~~t~---------------kvvR~f~gh~n-ritd~~FS~-DgrWlisasmD~tI-r~wDlp 606 (910)
T KOG1539|consen 549 LAIALDDFSIRVVDVVTR---------------KVVREFWGHGN-RITDMTFSP-DGRWLISASMDSTI-RTWDLP 606 (910)
T ss_pred hhhhcCceeEEEEEchhh---------------hhhHHhhcccc-ceeeeEeCC-CCcEEEEeecCCcE-EEEecc
Confidence 543 3333 36776653 23557889999 999999999 57789999999998 999975
No 83
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.82 E-value=1.4e-19 Score=205.42 Aligned_cols=306 Identities=14% Similarity=0.203 Sum_probs=224.8
Q ss_pred ccccccCCCcEEEEEeecCCceeEeecCCCceeeeccccceEEeeeccCCcccchhhhhhhhhhcccccccCCCCccccc
Q 000722 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMR 83 (1331)
Q Consensus 4 l~~L~gHs~~V~~lafSPdg~~LaSgs~DGtV~VWD~~tg~~i~s~~~~~~~~i~~vspdg~~Lasgs~d~~g~~l~~l~ 83 (1331)
.+.+..|.-.|+|++++|++.++++++.+|+|.=|++.+|+...-+-... .+ +-+.
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~--ev---------~k~~------------- 190 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERD--EV---------LKSH------------- 190 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccc--hh---------hhhc-------------
Confidence 45678899999999999999999999999999999999987653222110 00 0000
Q ss_pred CCceeEEeeecchhhHHHHhhhccccccCCcccccccccccCCCCCCCCceEEEEEeeccee-EeeeecccCCCCCcccc
Q 000722 84 GGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQEL 162 (1331)
Q Consensus 84 gg~V~sVaf~DgtIrvWdl~tg~~l~~~~~~~~~~~~~~V~svafspdg~~lLasgs~d~iI-vwDl~t~~~~~i~~~~~ 162 (1331)
+.+ ..... .+| ..-+.+++.++||+ +|++|+.|..+ +|+.++.+ .+..+.+
T Consensus 191 ~~~-----------------------~k~~r-~~h-~keil~~avS~Dgk-ylatgg~d~~v~Iw~~~t~e--hv~~~~g 242 (479)
T KOG0299|consen 191 GNP-----------------------LKESR-KGH-VKEILTLAVSSDGK-YLATGGRDRHVQIWDCDTLE--HVKVFKG 242 (479)
T ss_pred cCC-----------------------CCccc-ccc-cceeEEEEEcCCCc-EEEecCCCceEEEecCcccc--hhhcccc
Confidence 000 00011 123 55677889999998 99999988877 99999865 4556899
Q ss_pred ccccceeeehhhcccCCCcceEeecCCCceeeeeehhhheeehhhcCCCccchhhhhHhhhccccEEEeecCCCceEEEE
Q 000722 163 DNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILW 242 (1331)
Q Consensus 163 h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrVW 242 (1331)
|.+.|.+++| -.....+++++.|++|++|+++....+.++. ||...|..+. ...-++.+..|+.|+++++|
T Consensus 243 hr~~V~~L~f-----r~gt~~lys~s~Drsvkvw~~~~~s~vetly-GHqd~v~~Id---aL~reR~vtVGgrDrT~rlw 313 (479)
T KOG0299|consen 243 HRGAVSSLAF-----RKGTSELYSASADRSVKVWSIDQLSYVETLY-GHQDGVLGID---ALSRERCVTVGGRDRTVRLW 313 (479)
T ss_pred cccceeeeee-----ecCccceeeeecCCceEEEehhHhHHHHHHh-CCccceeeec---hhcccceEEeccccceeEEE
Confidence 9999999999 3445679999999999999999999999987 9999999997 45566777788899999999
Q ss_pred eccCCCccccccccceeeeccCcEEEEEechhccCCCcEEEeecCceeEeeeccchhhhcccCCCCcc------cccccc
Q 000722 243 SADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKL------ACHSVA 316 (1331)
Q Consensus 243 Dl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l------~~H~~~ 316 (1331)
++.... ...+.+|.+.+-|++|- +...+++||+||.|.+|++...+++.+....+.+ ..+...
T Consensus 314 Ki~ees-------qlifrg~~~sidcv~~I----n~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~W 382 (479)
T KOG0299|consen 314 KIPEES-------QLIFRGGEGSIDCVAFI----NDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFW 382 (479)
T ss_pred eccccc-------eeeeeCCCCCeeeEEEe----cccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccc
Confidence 995432 23468899999999997 5689999999999999999998887665433222 122347
Q ss_pred cccCCCCCCCcee-eeeecc--eeeeeecCccccccccccccccCCCccccccccceEEEEEEeccCCccEeeecceeEE
Q 000722 317 SWCHPRAPNLDIL-TCVKDS--HIWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGV 393 (1331)
Q Consensus 317 V~svafspdg~lL-a~s~Dg--~IWdl~~~~~~~l~~~~~~~~~~~~~~~l~~h~~~~I~~la~sp~~~~lLAtGs~DG~ 393 (1331)
|++++..|...++ +++.+| ++|-+..+- + ...++..+. -.. -|+.++|++++..+++..+....
T Consensus 383 itsla~i~~sdL~asGS~~G~vrLW~i~~g~-r----------~i~~l~~ls-~~G-fVNsl~f~~sgk~ivagiGkEhR 449 (479)
T KOG0299|consen 383 ITSLAVIPGSDLLASGSWSGCVRLWKIEDGL-R----------AINLLYSLS-LVG-FVNSLAFSNSGKRIVAGIGKEHR 449 (479)
T ss_pred eeeeEecccCceEEecCCCCceEEEEecCCc-c----------ccceeeecc-ccc-EEEEEEEccCCCEEEEecccccc
Confidence 8899999998877 566777 489988641 1 111222232 223 69999999965544444444444
Q ss_pred E
Q 000722 394 I 394 (1331)
Q Consensus 394 I 394 (1331)
+
T Consensus 450 l 450 (479)
T KOG0299|consen 450 L 450 (479)
T ss_pred c
Confidence 3
No 84
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=5.7e-20 Score=194.84 Aligned_cols=239 Identities=18% Similarity=0.243 Sum_probs=188.5
Q ss_pred CCcEEEEEeecCC-ceeEeecCCCceeeecccc-ceEEeeeccCCcccchhhhhhhhhhcccccccCCCCcccccCCcee
Q 000722 11 NDKIVKIQLHPTH-PWLVTADASDHVSVWNWEH-RQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRGGSVK 88 (1331)
Q Consensus 11 s~~V~~lafSPdg-~~LaSgs~DGtV~VWD~~t-g~~i~s~~~~~~~~i~~vspdg~~Lasgs~d~~g~~l~~l~gg~V~ 88 (1331)
.+.+..++|++.. ..+++++.||+++|||... ..+++.++.
T Consensus 60 ~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kE------------------------------------- 102 (311)
T KOG0277|consen 60 EDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKE------------------------------------- 102 (311)
T ss_pred ccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHh-------------------------------------
Confidence 4678899999875 4888999999999999431 012222221
Q ss_pred EEeeecchhhHHHHhhhccccccCCcccccccccccCCCCCCCCceEEEEEeeccee-EeeeecccCCCCCccccccccc
Q 000722 89 QVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQELDNKSL 167 (1331)
Q Consensus 89 sVaf~DgtIrvWdl~tg~~l~~~~~~~~~~~~~~V~svafspdg~~lLasgs~d~iI-vwDl~t~~~~~i~~~~~h~~~V 167 (1331)
| ...|.++.|++..+..+++++.|+.+ +|+.... ..+.++.+|...|
T Consensus 103 -----------------------------H-~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~--~Sv~Tf~gh~~~I 150 (311)
T KOG0277|consen 103 -----------------------------H-KREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRP--NSVQTFNGHNSCI 150 (311)
T ss_pred -----------------------------h-hhheEEeccccccceeEEeeccCCceEeecCCCC--cceEeecCCccEE
Confidence 1 34466777888776788888999988 8887653 3567789999999
Q ss_pred eeeehhhcccCCCcceEeecCCCceeeeeehhhh-eeehhhcCCCccchhhhhHhhhccccEEEeecCCCceEEEEeccC
Q 000722 168 VCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISW-KLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADH 246 (1331)
Q Consensus 168 ~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~-~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrVWDl~t 246 (1331)
....|+| ..+++++++|.||++++||++.. +.+. +. .|...+.|+.| ..-+.++|+||+.|+.||+||+++
T Consensus 151 y~a~~sp----~~~nlfas~Sgd~~l~lwdvr~~gk~~~-i~-ah~~Eil~cdw--~ky~~~vl~Tg~vd~~vr~wDir~ 222 (311)
T KOG0277|consen 151 YQAAFSP----HIPNLFASASGDGTLRLWDVRSPGKFMS-IE-AHNSEILCCDW--SKYNHNVLATGGVDNLVRGWDIRN 222 (311)
T ss_pred EEEecCC----CCCCeEEEccCCceEEEEEecCCCceeE-EE-eccceeEeecc--cccCCcEEEecCCCceEEEEehhh
Confidence 9999977 35789999999999999999864 4443 65 89999999997 455677999999999999999987
Q ss_pred CCccccccccceeeeccCcEEEEEechhccCCCcEEEeecCceeEeeeccchh-hhcccCCCCcccccccccccCCCCCC
Q 000722 247 GQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFK-ELRRIKPVPKLACHSVASWCHPRAPN 325 (1331)
Q Consensus 247 g~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~-~l~~~~~~~~l~~H~~~V~svafspd 325 (1331)
-+ .|++.+.+|.-.|..+.|+|. ...+|++++.|-++||||..... ++.+ ...|+..|..+.|++.
T Consensus 223 ~r-----~pl~eL~gh~~AVRkvk~Sph--~~~lLaSasYDmT~riw~~~~~ds~~e~------~~~HtEFv~g~Dws~~ 289 (311)
T KOG0277|consen 223 LR-----TPLFELNGHGLAVRKVKFSPH--HASLLASASYDMTVRIWDPERQDSAIET------VDHHTEFVCGLDWSLF 289 (311)
T ss_pred cc-----ccceeecCCceEEEEEecCcc--hhhHhhhccccceEEecccccchhhhhh------hhccceEEeccccccc
Confidence 65 467889999999999999994 66899999999999999988544 3333 5688899999999976
Q ss_pred --Cceeeeeecce--eee
Q 000722 326 --LDILTCVKDSH--IWA 339 (1331)
Q Consensus 326 --g~lLa~s~Dg~--IWd 339 (1331)
+.+.++|.|.. ||+
T Consensus 290 ~~~~vAs~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 290 DPGQVASTGWDELLYVWN 307 (311)
T ss_pred cCceeeecccccceeeec
Confidence 33557888886 565
No 85
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.82 E-value=1.3e-19 Score=219.19 Aligned_cols=209 Identities=19% Similarity=0.179 Sum_probs=159.3
Q ss_pred cccccceeeehhhcccCCCcceEeecCCCceeeeeehhh--------------------------------h--------
Q 000722 162 LDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMIS--------------------------------W-------- 201 (1331)
Q Consensus 162 ~h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t--------------------------------~-------- 201 (1331)
.|.+.|.++.| |+||+|||+|+.|+.||||.+.. .
T Consensus 265 ah~gaIw~mKF-----S~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~ 339 (712)
T KOG0283|consen 265 AHKGAIWAMKF-----SHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSS 339 (712)
T ss_pred ccCCcEEEEEe-----CCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccc
Confidence 78999999999 88999999999999999998754 0
Q ss_pred --------------------eeehhhcCCCccchhhhhHhhhccccEEEeecCCCceEEEEeccCCCccccccccceeee
Q 000722 202 --------------------KLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKA 261 (1331)
Q Consensus 202 --------------------~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrVWDl~tg~~~~~~~~~~~l~g 261 (1331)
++++.|. ||...|..+.| + ..++|+|+|.|.+||+|++...+|++. -.
T Consensus 340 ~~~~~s~~~~~p~~~f~f~ekP~~ef~-GHt~DILDlSW---S-Kn~fLLSSSMDKTVRLWh~~~~~CL~~-------F~ 407 (712)
T KOG0283|consen 340 RKGSQSPCVLLPLKAFVFSEKPFCEFK-GHTADILDLSW---S-KNNFLLSSSMDKTVRLWHPGRKECLKV-------FS 407 (712)
T ss_pred ccccCCccccCCCccccccccchhhhh-ccchhheeccc---c-cCCeeEeccccccEEeecCCCcceeeE-------Ee
Confidence 1233444 89999999997 3 456999999999999999998888764 45
Q ss_pred ccCcEEEEEechhccCCCcEEEeecCceeEeeeccchhhhcccCCCCcccccccccccCCCCCCCce-eeeeecce--ee
Q 000722 262 HDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDI-LTCVKDSH--IW 338 (1331)
Q Consensus 262 H~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg~l-La~s~Dg~--IW 338 (1331)
|.+-|+||+|+|. |.+||++||-||.||||++...+.+.- ..-..-|++++|.|||+. |.|+.+|. +|
T Consensus 408 HndfVTcVaFnPv--DDryFiSGSLD~KvRiWsI~d~~Vv~W-------~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY 478 (712)
T KOG0283|consen 408 HNDFVTCVAFNPV--DDRYFISGSLDGKVRLWSISDKKVVDW-------NDLRDLITAVCYSPDGKGAVIGTFNGYCRFY 478 (712)
T ss_pred cCCeeEEEEeccc--CCCcEeecccccceEEeecCcCeeEee-------hhhhhhheeEEeccCCceEEEEEeccEEEEE
Confidence 9999999999996 889999999999999999987654321 122267899999999995 47888885 77
Q ss_pred eeecCccccccccccccccCCCccccccccceEEEEEEeccCCccEeeecceeEEEEeecCCCCCCC
Q 000722 339 AIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPRSLPA 405 (1331)
Q Consensus 339 dl~~~~~~~l~~~~~~~~~~~~~~~l~~h~~~~I~~la~sp~~~~lLAtGs~DG~Il~VWDlr~~p~ 405 (1331)
+.....+ .....+..... + ...+. +|+++.|.|.+...|.+.++|..| ||+|.++...
T Consensus 479 ~t~~lk~-~~~~~I~~~~~-K-----k~~~~-rITG~Q~~p~~~~~vLVTSnDSrI-RI~d~~~~~l 536 (712)
T KOG0283|consen 479 DTEGLKL-VSDFHIRLHNK-K-----KKQGK-RITGLQFFPGDPDEVLVTSNDSRI-RIYDGRDKDL 536 (712)
T ss_pred EccCCeE-EEeeeEeeccC-c-----cccCc-eeeeeEecCCCCCeEEEecCCCce-EEEeccchhh
Confidence 7664322 11111111111 1 11233 799999999777668888888887 9999865433
No 86
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.82 E-value=5.4e-20 Score=216.52 Aligned_cols=365 Identities=13% Similarity=0.122 Sum_probs=247.0
Q ss_pred cccccccCCCcEEEEEeecCCc---eeEeecCCCceeeeccccceEEeeeccCCcccchhhhhhhhhhccccccc---CC
Q 000722 3 RLKAFRPTNDKIVKIQLHPTHP---WLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEH---KG 76 (1331)
Q Consensus 3 ~l~~L~gHs~~V~~lafSPdg~---~LaSgs~DGtV~VWD~~tg~~i~s~~~~~~~~i~~vspdg~~Lasgs~d~---~g 76 (1331)
++..|+||.++|.+++|...+. +|+|++.|..||||.+.-+....+........+. +++........-. ..
T Consensus 183 ~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~---~~~~~f~~l~~i~~~is~ 259 (764)
T KOG1063|consen 183 RVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTL---SNLPVFMILEEIQYRISF 259 (764)
T ss_pred EEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccc---cCCceeeeeeeEEEEEeh
Confidence 4678999999999999988655 8999999999999998654422211110000000 0000000000000 00
Q ss_pred CCcccccCCceeEEee-----------ecchhhHHHHhhhccc--cccCCcccccccccccCCCCCCCCceEEEEEeecc
Q 000722 77 KPTEAMRGGSVKQVNF-----------YDDDVRFWQLWRNRAA--AAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNK 143 (1331)
Q Consensus 77 ~~l~~l~gg~V~sVaf-----------~DgtIrvWdl~tg~~l--~~~~~~~~~~~~~~V~svafspdg~~lLasgs~d~ 143 (1331)
..+..-+..+|.++.| .|.++.+|...+..-+ ........++....+++.-|+|++..+++-|..++
T Consensus 260 eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg 339 (764)
T KOG1063|consen 260 EALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGG 339 (764)
T ss_pred hhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCc
Confidence 0111223467888877 6888888886554211 11111122233455788889999985555555666
Q ss_pred eeEee-eecccCCCCCccccccccceeeehhhcccCCCcceEeecCCCceeeeeehh----hheeehhhcCCCccchhhh
Q 000722 144 AIFLD-LVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMI----SWKLVRRYTGGHKGSISCL 218 (1331)
Q Consensus 144 iIvwD-l~t~~~~~i~~~~~h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~----t~~~v~~~~~gH~~~V~~v 218 (1331)
...|- -+.......+...+|.+.|+.|+| +|.|.+|++.+.|.+-|+|-.- ++..+.+-. -|...++|+
T Consensus 340 ~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W-----~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQ-iHGyDl~c~ 413 (764)
T KOG1063|consen 340 FHLWKTKDKTFWTQEPVISGHVDGVKDVDW-----DPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQ-IHGYDLTCL 413 (764)
T ss_pred EEEEeccCccceeeccccccccccceeeee-----cCCCCEEEEeccccceeeecccccccceeeecccc-cccccceee
Confidence 66884 333233345567899999999999 6789999999999999998653 223333333 689999999
Q ss_pred hHhhhccccEEEeecCCCceEEEEeccC-------------------------------------------CCc----c-
Q 000722 219 MTFMASSGEALLVSGGSDGLLILWSADH-------------------------------------------GQD----S- 250 (1331)
Q Consensus 219 awf~~spdg~lLaSgs~DgtIrVWDl~t-------------------------------------------g~~----~- 250 (1331)
+ +-+....|++|.....+|+|+... |.. .
T Consensus 414 ~---~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~e 490 (764)
T KOG1063|consen 414 S---FVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAE 490 (764)
T ss_pred e---hccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeee
Confidence 8 344467899999999999997621 000 0
Q ss_pred ----------------------ccccccceeeeccCcEEEEEechhccCCCcEEEeecC-----ceeEeeeccchhhhcc
Q 000722 251 ----------------------RELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGAD-----KTLAIWDTVSFKELRR 303 (1331)
Q Consensus 251 ----------------------~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~D-----g~IrIWDl~t~~~l~~ 303 (1331)
..|.....+.||...|.+++.+| ++++++|++.. ..|++|+..+....+.
T Consensus 491 t~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~---~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~ 567 (764)
T KOG1063|consen 491 TPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISP---TGNLIASACKSSLKEHAVIRLWNTANWLQVQE 567 (764)
T ss_pred cccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecC---CCCEEeehhhhCCccceEEEEEeccchhhhhe
Confidence 00112234678999999999999 89999999864 4589999998887765
Q ss_pred cCCCCcccccccccccCCCCCCCcee-eeeecce--eeeeecCccccccccccccccCCCccccccccceEEEEEEeccC
Q 000722 304 IKPVPKLACHSVASWCHPRAPNLDIL-TCVKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSL 380 (1331)
Q Consensus 304 ~~~~~~l~~H~~~V~svafspdg~lL-a~s~Dg~--IWdl~~~~~~~l~~~~~~~~~~~~~~~l~~h~~~~I~~la~sp~ 380 (1331)
+.+|+-.|+.++||||+++| +.+.|.+ +|....... ........+.|.. .||...|+|
T Consensus 568 ------L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~-----------~e~~fa~~k~HtR-IIWdcsW~p- 628 (764)
T KOG1063|consen 568 ------LEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIK-----------DEFRFACLKAHTR-IIWDCSWSP- 628 (764)
T ss_pred ------ecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccc-----------hhhhhccccccce-EEEEcccCc-
Confidence 78999999999999999965 8899986 787754211 0011223567777 999999999
Q ss_pred CccEeeecceeEEEEeecCCCC
Q 000722 381 QPHLVATGTNVGVIISEFDPRS 402 (1331)
Q Consensus 381 ~~~lLAtGs~DG~Il~VWDlr~ 402 (1331)
+..+++|++.|..| ++|...+
T Consensus 629 de~~FaTaSRDK~V-kVW~~~~ 649 (764)
T KOG1063|consen 629 DEKYFATASRDKKV-KVWEEPD 649 (764)
T ss_pred ccceeEEecCCceE-EEEeccC
Confidence 57779999999999 7998754
No 87
>PTZ00421 coronin; Provisional
Probab=99.82 E-value=2.1e-19 Score=219.88 Aligned_cols=256 Identities=14% Similarity=0.126 Sum_probs=185.4
Q ss_pred CCCcEEEEEeecCCceeEeecCCCceeeeccccceEEeeeccCCcccchhhhhhhhhhcccccccCCCCcccccCCceeE
Q 000722 10 TNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRGGSVKQ 89 (1331)
Q Consensus 10 Hs~~V~~lafSPdg~~LaSgs~DGtV~VWD~~tg~~i~s~~~~~~~~i~~vspdg~~Lasgs~d~~g~~l~~l~gg~V~s 89 (1331)
|-..|+...+++++..+++++.+.....|+...+..+..+...+
T Consensus 19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G------------------------------------ 62 (493)
T PTZ00421 19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYG------------------------------------ 62 (493)
T ss_pred ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccc------------------------------------
Confidence 45667778888898888999999999999876554333222100
Q ss_pred EeeecchhhHHHHhhhccccccCCcccccccccccCCCCCC-CCceEEEEEeeccee-EeeeecccC-----CCCCcccc
Q 000722 90 VNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPST-KGRHFLVICCVNKAI-FLDLVTMRG-----RDIPKQEL 162 (1331)
Q Consensus 90 Vaf~DgtIrvWdl~tg~~l~~~~~~~~~~~~~~V~svafsp-dg~~lLasgs~d~iI-vwDl~t~~~-----~~i~~~~~ 162 (1331)
+. ....+...+| ...|++++|+| ++. +|++|+.|+.+ +||+.+... ..+..+.+
T Consensus 63 ----------------~~-~~~~~~l~GH-~~~V~~v~fsP~d~~-~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~g 123 (493)
T PTZ00421 63 ----------------KL-ASNPPILLGQ-EGPIIDVAFNPFDPQ-KLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQG 123 (493)
T ss_pred ----------------cC-CCCCceEeCC-CCCEEEEEEcCCCCC-EEEEEeCCCEEEEEecCCCccccccCcceEEecC
Confidence 00 0001223344 67789999999 665 89999999887 899875421 23445678
Q ss_pred ccccceeeehhhcccCCCc-ceEeecCCCceeeeeehhhheeehhhcCCCccchhhhhHhhhccccEEEeecCCCceEEE
Q 000722 163 DNKSLVCMEFLSRSAVGDV-PLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLIL 241 (1331)
Q Consensus 163 h~~~V~~Vaf~P~s~Spdg-~~LasGs~DGtIrlWDl~t~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrV 241 (1331)
|...|.+++|+ |++ .+|++|+.|++|+|||+.+++.+..+. +|...|.+++ +++++.+|++|+.|++|++
T Consensus 124 H~~~V~~l~f~-----P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~-~h~~~V~sla---~spdG~lLatgs~Dg~IrI 194 (493)
T PTZ00421 124 HTKKVGIVSFH-----PSAMNVLASAGADMVVNVWDVERGKAVEVIK-CHSDQITSLE---WNLDGSLLCTTSKDKKLNI 194 (493)
T ss_pred CCCcEEEEEeC-----cCCCCEEEEEeCCCEEEEEECCCCeEEEEEc-CCCCceEEEE---EECCCCEEEEecCCCEEEE
Confidence 99999999994 554 689999999999999999998888876 8999999998 6899999999999999999
Q ss_pred EeccCCCccccccccceeeeccCc-EEEEEechhccCCCcEEEee----cCceeEeeeccchhhhcccCCCCcccc-ccc
Q 000722 242 WSADHGQDSRELVPKLSLKAHDGG-VVAVELSRVMGGSPQLITIG----ADKTLAIWDTVSFKELRRIKPVPKLAC-HSV 315 (1331)
Q Consensus 242 WDl~tg~~~~~~~~~~~l~gH~~~-V~svafsp~~~dg~~LaSgs----~Dg~IrIWDl~t~~~l~~~~~~~~l~~-H~~ 315 (1331)
||+++++.+. .+.+|.+. +..+.|++ ++..|++++ .|+.|++||+++...... .... +..
T Consensus 195 wD~rsg~~v~------tl~~H~~~~~~~~~w~~---~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~-----~~~~d~~~ 260 (493)
T PTZ00421 195 IDPRDGTIVS------SVEAHASAKSQRCLWAK---RKDLIITLGCSKSQQRQIMLWDTRKMASPYS-----TVDLDQSS 260 (493)
T ss_pred EECCCCcEEE------EEecCCCCcceEEEEcC---CCCeEEEEecCCCCCCeEEEEeCCCCCCcee-----EeccCCCC
Confidence 9999887543 35778764 45678888 556666654 489999999986542211 1111 223
Q ss_pred ccccCCCCCCCcee-eee-ecce--eeeeecC
Q 000722 316 ASWCHPRAPNLDIL-TCV-KDSH--IWAIEHP 343 (1331)
Q Consensus 316 ~V~svafspdg~lL-a~s-~Dg~--IWdl~~~ 343 (1331)
.+....|++++.+| +++ .|+. +||+..+
T Consensus 261 ~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~ 292 (493)
T PTZ00421 261 ALFIPFFDEDTNLLYIGSKGEGNIRCFELMNE 292 (493)
T ss_pred ceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCC
Confidence 44456688998855 555 4775 7999864
No 88
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.82 E-value=1.1e-19 Score=206.80 Aligned_cols=261 Identities=16% Similarity=0.203 Sum_probs=197.9
Q ss_pred ccccccCCCCCCCCceEEEEEeeccee-EeeeecccCC--------CCCccccccccceeeehhhcccCCCcceEeecCC
Q 000722 119 VTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGR--------DIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSS 189 (1331)
Q Consensus 119 ~~~~V~svafspdg~~lLasgs~d~iI-vwDl~t~~~~--------~i~~~~~h~~~V~~Vaf~P~s~Spdg~~LasGs~ 189 (1331)
+.+.|+.+.+.|+.+.++++.+.++-+ +||+.+.... .-..+.+|.+.-..+.|.+ ...-.+++|+.
T Consensus 123 h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~----~~~g~Lls~~~ 198 (422)
T KOG0264|consen 123 HDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNR----QQEGTLLSGSD 198 (422)
T ss_pred CCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeeccccccccccc----ccceeEeeccC
Confidence 367788899999998788877777655 8888643221 1125678888788899954 23457999999
Q ss_pred Cceeeeeehhhhee-------ehhhcCCCccchhhhhHhhhccccEEEeecCCCceEEEEeccCCCccccccccceeeec
Q 000722 190 DGVIRVLSMISWKL-------VRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAH 262 (1331)
Q Consensus 190 DGtIrlWDl~t~~~-------v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrVWDl~tg~~~~~~~~~~~l~gH 262 (1331)
|++|.+||+..... ...+ .+|...|..++|. ..+..+|++++.|+.+.|||.+++. -.+.....+|
T Consensus 199 d~~i~lwdi~~~~~~~~~~~p~~~~-~~h~~~VeDV~~h--~~h~~lF~sv~dd~~L~iwD~R~~~----~~~~~~~~ah 271 (422)
T KOG0264|consen 199 DHTICLWDINAESKEDKVVDPKTIF-SGHEDVVEDVAWH--PLHEDLFGSVGDDGKLMIWDTRSNT----SKPSHSVKAH 271 (422)
T ss_pred CCcEEEEeccccccCCccccceEEe-ecCCcceehhhcc--ccchhhheeecCCCeEEEEEcCCCC----CCCccccccc
Confidence 99999999975322 2233 4999999999974 4456699999999999999999741 1244557899
Q ss_pred cCcEEEEEechhccCCCcEEEeecCceeEeeeccchhhhcccCCCCcccccccccccCCCCCCCc-ee-eeeecce--ee
Q 000722 263 DGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLD-IL-TCVKDSH--IW 338 (1331)
Q Consensus 263 ~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg~-lL-a~s~Dg~--IW 338 (1331)
.+.|+|++|+|. ++.+|+|||.|++|++||+++.+. +...+.+|...|.+|.|+|+.. +| ++|.|++ ||
T Consensus 272 ~~~vn~~~fnp~--~~~ilAT~S~D~tV~LwDlRnL~~-----~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vW 344 (422)
T KOG0264|consen 272 SAEVNCVAFNPF--NEFILATGSADKTVALWDLRNLNK-----PLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVW 344 (422)
T ss_pred CCceeEEEeCCC--CCceEEeccCCCcEEEeechhccc-----CceeccCCCcceEEEEeCCCCCceeEecccCCcEEEE
Confidence 999999999994 788999999999999999997653 4456899999999999999977 44 5678886 89
Q ss_pred eeecCcccccccccccccc--CCCccccccccceEEEEEEeccCCccEeeecceeEEEEeecCCCC
Q 000722 339 AIEHPTYSALTRPLCELSS--LVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPRS 402 (1331)
Q Consensus 339 dl~~~~~~~l~~~~~~~~~--~~~~~~l~~h~~~~I~~la~sp~~~~lLAtGs~DG~Il~VWDlr~ 402 (1331)
|+..-..... ..+-.. ...+..-.+|.. .|..+.|+|..+..|++.++|+.+ .||++..
T Consensus 345 Dls~ig~eq~---~eda~dgppEllF~HgGH~~-kV~DfsWnp~ePW~I~SvaeDN~L-qIW~~s~ 405 (422)
T KOG0264|consen 345 DLSRIGEEQS---PEDAEDGPPELLFIHGGHTA-KVSDFSWNPNEPWTIASVAEDNIL-QIWQMAE 405 (422)
T ss_pred eccccccccC---hhhhccCCcceeEEecCccc-ccccccCCCCCCeEEEEecCCceE-EEeeccc
Confidence 9985322111 011111 122344566777 899999999999999999999887 9999753
No 89
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.81 E-value=3.7e-19 Score=209.56 Aligned_cols=348 Identities=16% Similarity=0.153 Sum_probs=226.6
Q ss_pred ccccccCCCcEEEEEeecCCc---eeEeecCCCceeeeccccceE--EeeeccCCcccchhhhhhhhhhcccccccCCCC
Q 000722 4 LKAFRPTNDKIVKIQLHPTHP---WLVTADASDHVSVWNWEHRQV--IYELKAGGVDQRRLVGAKLEKLAEGELEHKGKP 78 (1331)
Q Consensus 4 l~~L~gHs~~V~~lafSPdg~---~LaSgs~DGtV~VWD~~tg~~--i~s~~~~~~~~i~~vspdg~~Lasgs~d~~g~~ 78 (1331)
...+.||..+|+|+.|-|+.. ++++|+.|++|++|.++.... +.++.. |...+.++. +
T Consensus 47 ~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g-~~~~~~cv~-a--------------- 109 (764)
T KOG1063|consen 47 VTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQG-HCKECVCVV-A--------------- 109 (764)
T ss_pred EEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeecC-cceeEEEEE-e---------------
Confidence 567899999999999999887 899999999999999984433 444443 211211110 0
Q ss_pred cccccCCceeEEeeecchhhHHHHhhhc--cccccCCcccccccccccCCCCCC-CCceEEEEEeeccee-EeeeecccC
Q 000722 79 TEAMRGGSVKQVNFYDDDVRFWQLWRNR--AAAAEAPTAVSNVTSGFASPPPST-KGRHFLVICCVNKAI-FLDLVTMRG 154 (1331)
Q Consensus 79 l~~l~gg~V~sVaf~DgtIrvWdl~tg~--~l~~~~~~~~~~~~~~V~svafsp-dg~~lLasgs~d~iI-vwDl~t~~~ 154 (1331)
...+..+.-.|+++.+||.+..+ +......... .-.-.|+++.+ .+..++++|+.+..+ ++.-.+.+.
T Consensus 110 -----~~~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k---~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f 181 (764)
T KOG1063|consen 110 -----RSSVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIK---EAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSF 181 (764)
T ss_pred -----eeeEEEeeccCceEEEeecCCCceeeehheehhhh---hHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcce
Confidence 11111112368999999985444 1110000000 11223555666 455566667777666 443334556
Q ss_pred CCCCccccccccceeeehhhcccCCCcceEeecCCCceeeeeehhhhe------------------------eeh-----
Q 000722 155 RDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWK------------------------LVR----- 205 (1331)
Q Consensus 155 ~~i~~~~~h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~~------------------------~v~----- 205 (1331)
..+..+.+|.++|++++|... ..+.-+|+++|.|..||||.+.-+. .+.
T Consensus 182 ~~v~el~GH~DWIrsl~f~~~--~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~ 259 (764)
T KOG1063|consen 182 ARVAELEGHTDWIRSLAFARL--GGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISF 259 (764)
T ss_pred eEEEEeeccchhhhhhhhhcc--CCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEeh
Confidence 667778999999999999431 2234589999999999999875221 111
Q ss_pred -hhcCCCccchhhhhHhhhccccEEEeecCCCceEEEEeccCCCccccc-cccceeeeccCcEEEEEechhccCCCcEEE
Q 000722 206 -RYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSREL-VPKLSLKAHDGGVVAVELSRVMGGSPQLIT 283 (1331)
Q Consensus 206 -~~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrVWDl~tg~~~~~~-~~~~~l~gH~~~V~svafsp~~~dg~~LaS 283 (1331)
.+..||...|+++.| +|.+..|+++|.|.++.+|...+..-++.- .....+.|...+..+..|+| ++..+++
T Consensus 260 eall~GHeDWV~sv~W---~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~---n~~~ii~ 333 (764)
T KOG1063|consen 260 EALLMGHEDWVYSVWW---HPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSP---NSNVIIA 333 (764)
T ss_pred hhhhcCcccceEEEEE---ccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcC---CCCEEEE
Confidence 223499999999975 788889999999999999987665333210 01112234456788999999 7899999
Q ss_pred eecCceeEeeeccchhhhcccCCCCcccccccccccCCCCCCCcee-eeeecce--eeeeecCccccccccccccccCCC
Q 000722 284 IGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDIL-TCVKDSH--IWAIEHPTYSALTRPLCELSSLVP 360 (1331)
Q Consensus 284 gs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg~lL-a~s~Dg~--IWdl~~~~~~~l~~~~~~~~~~~~ 360 (1331)
-+..|-.++|......... ......||.+.|..++|+|.|.+| +.|.|.+ |+---..+ .. + ..
T Consensus 334 ~g~~Gg~hlWkt~d~~~w~---~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q---~~---w-----HE 399 (764)
T KOG1063|consen 334 HGRTGGFHLWKTKDKTFWT---QEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQ---QE---W-----HE 399 (764)
T ss_pred ecccCcEEEEeccCcccee---eccccccccccceeeeecCCCCEEEEeccccceeeecccccc---cc---e-----ee
Confidence 9999999999933322211 123368999999999999999955 8888875 43211000 00 1 11
Q ss_pred ccccccccceEEEEEEeccCCccEeeecceeEEEEeecCCC
Q 000722 361 PQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPR 401 (1331)
Q Consensus 361 ~~~l~~h~~~~I~~la~sp~~~~lLAtGs~DG~Il~VWDlr 401 (1331)
+..-.-|+- .++|++|-+ ....+++|.++.++ |+|+..
T Consensus 400 iaRPQiHGy-Dl~c~~~vn-~~~~FVSgAdEKVl-RvF~aP 437 (764)
T KOG1063|consen 400 IARPQIHGY-DLTCLSFVN-EDLQFVSGADEKVL-RVFEAP 437 (764)
T ss_pred ecccccccc-cceeeehcc-CCceeeecccceee-eeecCc
Confidence 112223554 789999988 35557777766665 999864
No 90
>PTZ00421 coronin; Provisional
Probab=99.81 E-value=2.2e-19 Score=219.65 Aligned_cols=207 Identities=18% Similarity=0.243 Sum_probs=156.1
Q ss_pred CccccccccceeeehhhcccCC-CcceEeecCCCceeeeeehhhhe-------eehhhcCCCccchhhhhHhhhcccc-E
Q 000722 158 PKQELDNKSLVCMEFLSRSAVG-DVPLVAFGSSDGVIRVLSMISWK-------LVRRYTGGHKGSISCLMTFMASSGE-A 228 (1331)
Q Consensus 158 ~~~~~h~~~V~~Vaf~P~s~Sp-dg~~LasGs~DGtIrlWDl~t~~-------~v~~~~~gH~~~V~~vawf~~spdg-~ 228 (1331)
..+.+|.+.|++++| +| ++.+|++|+.|++|++||+.++. .+..+. +|...|.+++ |+|++ +
T Consensus 69 ~~l~GH~~~V~~v~f-----sP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~-gH~~~V~~l~---f~P~~~~ 139 (493)
T PTZ00421 69 PILLGQEGPIIDVAF-----NPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQ-GHTKKVGIVS---FHPSAMN 139 (493)
T ss_pred ceEeCCCCCEEEEEE-----cCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEec-CCCCcEEEEE---eCcCCCC
Confidence 346789999999999 56 78899999999999999997642 344555 8999999998 57764 7
Q ss_pred EEeecCCCceEEEEeccCCCccccccccceeeeccCcEEEEEechhccCCCcEEEeecCceeEeeeccchhhhcccCCCC
Q 000722 229 LLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVP 308 (1331)
Q Consensus 229 lLaSgs~DgtIrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~ 308 (1331)
+|++|+.|++|+|||+.+++... .+.+|...|++++|+| ++.+|++++.|++|+|||+++++.+.+
T Consensus 140 iLaSgs~DgtVrIWDl~tg~~~~------~l~~h~~~V~sla~sp---dG~lLatgs~Dg~IrIwD~rsg~~v~t----- 205 (493)
T PTZ00421 140 VLASAGADMVVNVWDVERGKAVE------VIKCHSDQITSLEWNL---DGSLLCTTSKDKKLNIIDPRDGTIVSS----- 205 (493)
T ss_pred EEEEEeCCCEEEEEECCCCeEEE------EEcCCCCceEEEEEEC---CCCEEEEecCCCEEEEEECCCCcEEEE-----
Confidence 99999999999999999876433 4678999999999999 899999999999999999999887655
Q ss_pred ccccccccc-ccCCCCCCCc-eeeee----ecce--eeeeecCccccccccccccccCCCccccccccceEEEEEEeccC
Q 000722 309 KLACHSVAS-WCHPRAPNLD-ILTCV----KDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSL 380 (1331)
Q Consensus 309 ~l~~H~~~V-~svafspdg~-lLa~s----~Dg~--IWdl~~~~~~~l~~~~~~~~~~~~~~~l~~h~~~~I~~la~sp~ 380 (1331)
+.+|...+ ..+.|++++. ++++| .|+. +||++... .+......+....+....|+++
T Consensus 206 -l~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~--------------~p~~~~~~d~~~~~~~~~~d~d 270 (493)
T PTZ00421 206 -VEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMA--------------SPYSTVDLDQSSALFIPFFDED 270 (493)
T ss_pred -EecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCC--------------CceeEeccCCCCceEEEEEcCC
Confidence 45666543 3566777765 45554 3453 89987531 1111222222224666778884
Q ss_pred CccEeeecc-eeEEEEeecCCCCCC
Q 000722 381 QPHLVATGT-NVGVIISEFDPRSLP 404 (1331)
Q Consensus 381 ~~~lLAtGs-~DG~Il~VWDlr~~p 404 (1331)
+.++++|+ .||.| ++||++...
T Consensus 271 -~~~L~lggkgDg~I-riwdl~~~~ 293 (493)
T PTZ00421 271 -TNLLYIGSKGEGNI-RCFELMNER 293 (493)
T ss_pred -CCEEEEEEeCCCeE-EEEEeeCCc
Confidence 55666665 69998 999997543
No 91
>PTZ00420 coronin; Provisional
Probab=99.81 E-value=1.6e-19 Score=221.91 Aligned_cols=242 Identities=10% Similarity=0.121 Sum_probs=168.9
Q ss_pred ccccccCCCcEEEEEeecC-CceeEeecCCCceeeeccccceE-EeeeccCCcccchhhhhhhhhhcccccccCCCCccc
Q 000722 4 LKAFRPTNDKIVKIQLHPT-HPWLVTADASDHVSVWNWEHRQV-IYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEA 81 (1331)
Q Consensus 4 l~~L~gHs~~V~~lafSPd-g~~LaSgs~DGtV~VWD~~tg~~-i~s~~~~~~~~i~~vspdg~~Lasgs~d~~g~~l~~ 81 (1331)
+..|.+|.+.|.+++|+|+ +.+|+||+.||+|+|||+.++.. +..+.
T Consensus 67 v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~------------------------------- 115 (568)
T PTZ00420 67 VIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIK------------------------------- 115 (568)
T ss_pred EEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccc-------------------------------
Confidence 4568999999999999997 78999999999999999875321 11000
Q ss_pred ccCCceeEEeeecchhhHHHHhhhccccccCCcccccccccccCCCCCCCCceEEEEEeeccee-EeeeecccCCCCCcc
Q 000722 82 MRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQ 160 (1331)
Q Consensus 82 l~gg~V~sVaf~DgtIrvWdl~tg~~l~~~~~~~~~~~~~~V~svafspdg~~lLasgs~d~iI-vwDl~t~~~~~i~~~ 160 (1331)
.+ .....+| ...|.+++|+|++..++++++.|+.+ +||+.+++. +..+
T Consensus 116 ---~p-------------------------~~~L~gH-~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~--~~~i 164 (568)
T PTZ00420 116 ---DP-------------------------QCILKGH-KKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKR--AFQI 164 (568)
T ss_pred ---cc-------------------------eEEeecC-CCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcE--EEEE
Confidence 00 0011122 55688899999998677888888777 899987642 2222
Q ss_pred ccccccceeeehhhcccCCCcceEeecCCCceeeeeehhhheeehhhcCCCccchhhhhHh--hhccccEEEeecCCCc-
Q 000722 161 ELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTF--MASSGEALLVSGGSDG- 237 (1331)
Q Consensus 161 ~~h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~~~v~~~~~gH~~~V~~vawf--~~spdg~lLaSgs~Dg- 237 (1331)
.|...|.+++| +++|.+|++++.|+.|+|||+++++.+..+. +|.+.+.+..++ .+++++.+|++++.|+
T Consensus 165 -~~~~~V~Slsw-----spdG~lLat~s~D~~IrIwD~Rsg~~i~tl~-gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~ 237 (568)
T PTZ00420 165 -NMPKKLSSLKW-----NIKGNLLSGTCVGKHMHIIDPRKQEIASSFH-IHDGGKNTKNIWIDGLGGDDNYILSTGFSKN 237 (568)
T ss_pred -ecCCcEEEEEE-----CCCCCEEEEEecCCEEEEEECCCCcEEEEEe-cccCCceeEEEEeeeEcCCCCEEEEEEcCCC
Confidence 25578999999 7799999999999999999999999888876 898776543311 1357888888877664
Q ss_pred ---eEEEEeccCC-CccccccccceeeeccCcEEEEEechhccCCCcEEEeecCceeEeeeccchhhhcccCCCCccccc
Q 000722 238 ---LLILWSADHG-QDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACH 313 (1331)
Q Consensus 238 ---tIrVWDl~tg-~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H 313 (1331)
+|+|||++.. +.+.. ..+..+.+.+.. .|.+ +++.++++|+.|++|++|++..+. +..+. . ..+
T Consensus 238 ~~R~VkLWDlr~~~~pl~~----~~ld~~~~~L~p-~~D~--~tg~l~lsGkGD~tIr~~e~~~~~-~~~l~---~-~~s 305 (568)
T PTZ00420 238 NMREMKLWDLKNTTSALVT----MSIDNASAPLIP-HYDE--STGLIYLIGKGDGNCRYYQHSLGS-IRKVN---E-YKS 305 (568)
T ss_pred CccEEEEEECCCCCCceEE----EEecCCccceEE-eeeC--CCCCEEEEEECCCeEEEEEccCCc-EEeec---c-ccc
Confidence 7999999863 32221 122222232322 3333 378899999999999999998663 22221 1 124
Q ss_pred ccccccCCCCCCC
Q 000722 314 SVASWCHPRAPNL 326 (1331)
Q Consensus 314 ~~~V~svafspdg 326 (1331)
..++.+++|.|+.
T Consensus 306 ~~p~~g~~f~Pkr 318 (568)
T PTZ00420 306 CSPFRSFGFLPKQ 318 (568)
T ss_pred CCCccceEEcccc
Confidence 4566677777753
No 92
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.81 E-value=7.7e-20 Score=192.93 Aligned_cols=264 Identities=21% Similarity=0.238 Sum_probs=198.1
Q ss_pred CccccccccCCCcEEEEEeecCCceeEeecCCCceeeeccccce---EEeeeccCCcccchhhhhhhhhhcccccccCCC
Q 000722 1 MLRLKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQ---VIYELKAGGVDQRRLVGAKLEKLAEGELEHKGK 77 (1331)
Q Consensus 1 mL~l~~L~gHs~~V~~lafSPdg~~LaSgs~DGtV~VWD~~tg~---~i~s~~~~~~~~i~~vspdg~~Lasgs~d~~g~ 77 (1331)
|+.++.-..|.+-|..+...-.|++|+||+.|++|+|+.++... ++.++..|
T Consensus 1 ~~~q~idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh------------------------- 55 (299)
T KOG1332|consen 1 TVMQTIDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGH------------------------- 55 (299)
T ss_pred CcceehhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCC-------------------------
Confidence 45566678899999999999999999999999999999987543 34444422
Q ss_pred CcccccCCceeEEeeecchhhHHHHhhhccccccCCcccccccccccCCCCCCC-CceEEEEEeeccee-EeeeecccCC
Q 000722 78 PTEAMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTK-GRHFLVICCVNKAI-FLDLVTMRGR 155 (1331)
Q Consensus 78 ~l~~l~gg~V~sVaf~DgtIrvWdl~tg~~l~~~~~~~~~~~~~~V~svafspd-g~~lLasgs~d~iI-vwDl~t~~~~ 155 (1331)
.|+|+.+.| -+|. |. +|++|+.|+.+ +|...+++..
T Consensus 56 ------~GPVwqv~w-----------------------------------ahPk~G~-iLAScsYDgkVIiWke~~g~w~ 93 (299)
T KOG1332|consen 56 ------SGPVWKVAW-----------------------------------AHPKFGT-ILASCSYDGKVIIWKEENGRWT 93 (299)
T ss_pred ------CCCeeEEee-----------------------------------cccccCc-EeeEeecCceEEEEecCCCchh
Confidence 367666666 1443 54 99999988755 8888877666
Q ss_pred CCCccccccccceeeehhhcccCCCcceEeecCCCceeeeeehhhh--eeehhhcCCCccchhhhhHhhhcccc------
Q 000722 156 DIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISW--KLVRRYTGGHKGSISCLMTFMASSGE------ 227 (1331)
Q Consensus 156 ~i~~~~~h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~--~~v~~~~~gH~~~V~~vawf~~spdg------ 227 (1331)
.......|...|++|+|-| +..|-.|++++.||.|.|.+.++. -....+...|.-.|++++|..-+..|
T Consensus 94 k~~e~~~h~~SVNsV~wap---heygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~ 170 (299)
T KOG1332|consen 94 KAYEHAAHSASVNSVAWAP---HEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQG 170 (299)
T ss_pred hhhhhhhhcccceeecccc---cccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccC
Confidence 6666788999999999977 566889999999999999988753 33334445899999999986333233
Q ss_pred -----EEEeecCCCceEEEEeccCCCccccccccceeeeccCcEEEEEechhcc-CCCcEEEeecCceeEeeeccchhhh
Q 000722 228 -----ALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMG-GSPQLITIGADKTLAIWDTVSFKEL 301 (1331)
Q Consensus 228 -----~lLaSgs~DgtIrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~-dg~~LaSgs~Dg~IrIWDl~t~~~l 301 (1331)
..|+||+.|..|+||+..+++ +....+|.+|.+.|+.++|.|.-+ ...+|+++|.||+|.||..+.....
T Consensus 171 ~~~~~krlvSgGcDn~VkiW~~~~~~----w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~ 246 (299)
T KOG1332|consen 171 PAAKVKRLVSGGCDNLVKIWKFDSDS----WKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEP 246 (299)
T ss_pred cccccceeeccCCccceeeeecCCcc----hhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCc
Confidence 579999999999999998874 334455899999999999999421 2368999999999999987632121
Q ss_pred cccCCCCcccccccccccCCCCCCCceeee-eecce--eeeee
Q 000722 302 RRIKPVPKLACHSVASWCHPRAPNLDILTC-VKDSH--IWAIE 341 (1331)
Q Consensus 302 ~~~~~~~~l~~H~~~V~svafspdg~lLa~-s~Dg~--IWdl~ 341 (1331)
.+.+. +..-...++.+.||..|.+|+. +.|+. +|.-+
T Consensus 247 wk~tl---l~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 247 WKKTL---LEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred ccccc---cccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 12111 2334567899999999998854 45554 67544
No 93
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.81 E-value=2.7e-19 Score=201.21 Aligned_cols=282 Identities=13% Similarity=0.170 Sum_probs=220.6
Q ss_pred CcEEEEEeecCCceeEeecCCCceeeeccccceEEeeeccCCcccchhhhhhhhhhcccccccCCCCcccccCCceeEEe
Q 000722 12 DKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRGGSVKQVN 91 (1331)
Q Consensus 12 ~~V~~lafSPdg~~LaSgs~DGtV~VWD~~tg~~i~s~~~~~~~~i~~vspdg~~Lasgs~d~~g~~l~~l~gg~V~sVa 91 (1331)
..|+++...|..+.++||+.|.++.++|..+++.+..|+++
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh--------------------------------------- 260 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGH--------------------------------------- 260 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCc---------------------------------------
Confidence 46888888888889999999999999999888877777733
Q ss_pred eecchhhHHHHhhhccccccCCcccccccccccCCCCCCCCceEEEEEeeccee-EeeeecccCCCCCccccccccceee
Q 000722 92 FYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQELDNKSLVCM 170 (1331)
Q Consensus 92 f~DgtIrvWdl~tg~~l~~~~~~~~~~~~~~V~svafspdg~~lLasgs~d~iI-vwDl~t~~~~~i~~~~~h~~~V~~V 170 (1331)
...|+.+.|+++.. .+++++.|..+ +|..-... +......|..+|+.+
T Consensus 261 ----------------------------~kki~~v~~~~~~~-~v~~aSad~~i~vws~~~~s--~~~~~~~h~~~V~~l 309 (506)
T KOG0289|consen 261 ----------------------------TKKITSVKFHKDLD-TVITASADEIIRVWSVPLSS--EPTSSRPHEEPVTGL 309 (506)
T ss_pred ----------------------------ceEEEEEEeccchh-heeecCCcceEEeecccccc--Cccccccccccceee
Confidence 22345677888887 77888888877 78554422 445578899999999
Q ss_pred ehhhcccCCCcceEeecCCCceeeeeehhhheeehhhcC-CCccchhhhhHhhhccccEEEeecCCCceEEEEeccCCCc
Q 000722 171 EFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTG-GHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQD 249 (1331)
Q Consensus 171 af~P~s~Spdg~~LasGs~DGtIrlWDl~t~~~v~~~~~-gH~~~V~~vawf~~spdg~lLaSgs~DgtIrVWDl~tg~~ 249 (1331)
.. +|+|.||+++++||+..+.|++++.++..... ...-.+++.+ |+|||.+|.+|..|+.|++||+.++..
T Consensus 310 s~-----h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~---fHpDgLifgtgt~d~~vkiwdlks~~~ 381 (506)
T KOG0289|consen 310 SL-----HPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAA---FHPDGLIFGTGTPDGVVKIWDLKSQTN 381 (506)
T ss_pred ee-----ccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEee---EcCCceEEeccCCCceEEEEEcCCccc
Confidence 99 56899999999999999999999988776541 1223477776 899999999999999999999998875
Q ss_pred cccccccceeeeccCcEEEEEechhccCCCcEEEeecCceeEeeeccchhhhcccCCCCcccccccccccCCCCCCCcee
Q 000722 250 SRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDIL 329 (1331)
Q Consensus 250 ~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg~lL 329 (1331)
+.. |.+|.++|..+.|+. +|-+|+++++|+.|++||++..+..+++.. .....+.++.|.+.|.+|
T Consensus 382 ~a~------Fpght~~vk~i~FsE---NGY~Lat~add~~V~lwDLRKl~n~kt~~l-----~~~~~v~s~~fD~SGt~L 447 (506)
T KOG0289|consen 382 VAK------FPGHTGPVKAISFSE---NGYWLATAADDGSVKLWDLRKLKNFKTIQL-----DEKKEVNSLSFDQSGTYL 447 (506)
T ss_pred ccc------CCCCCCceeEEEecc---CceEEEEEecCCeEEEEEehhhcccceeec-----cccccceeEEEcCCCCeE
Confidence 544 689999999999997 899999999999999999998776665421 112267789999999977
Q ss_pred -eeeecceeeeeecCccccccccccccccCCCccccccccceEEEEEEeccCCccEeeecceeEEEEeecC
Q 000722 330 -TCVKDSHIWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFD 399 (1331)
Q Consensus 330 -a~s~Dg~IWdl~~~~~~~l~~~~~~~~~~~~~~~l~~h~~~~I~~la~sp~~~~lLAtGs~DG~Il~VWD 399 (1331)
++|.|-+|+.....+ .....+..+..|.. ..+++.|.. ...++++++.|... +++.
T Consensus 448 ~~~g~~l~Vy~~~k~~-----------k~W~~~~~~~~~sg-~st~v~Fg~-~aq~l~s~smd~~l-~~~a 504 (506)
T KOG0289|consen 448 GIAGSDLQVYICKKKT-----------KSWTEIKELADHSG-LSTGVRFGE-HAQYLASTSMDAIL-RLYA 504 (506)
T ss_pred EeecceeEEEEEeccc-----------ccceeeehhhhccc-ccceeeecc-cceEEeeccchhhe-EEee
Confidence 566777777665321 12234455666665 788899988 46779999998875 6654
No 94
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.80 E-value=3.7e-19 Score=219.90 Aligned_cols=255 Identities=19% Similarity=0.232 Sum_probs=191.5
Q ss_pred CcccccccccccCCCCCCCCceEEEEEe--ec-ceeEeeeecc----------cCCCCCccccccccceeeehhhcccCC
Q 000722 113 PTAVSNVTSGFASPPPSTKGRHFLVICC--VN-KAIFLDLVTM----------RGRDIPKQELDNKSLVCMEFLSRSAVG 179 (1331)
Q Consensus 113 ~~~~~~~~~~V~svafspdg~~lLasgs--~d-~iIvwDl~t~----------~~~~i~~~~~h~~~V~~Vaf~P~s~Sp 179 (1331)
+...+|....|.++..+|+|. .+++|+ .| +.++|+...- -.+.+.....|.+.|+|+.| ++
T Consensus 6 p~wv~H~~~~IfSIdv~pdg~-~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~-----S~ 79 (942)
T KOG0973|consen 6 PTWVNHNEKSIFSIDVHPDGV-KFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRF-----SP 79 (942)
T ss_pred ccccccCCeeEEEEEecCCce-eEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEE-----CC
Confidence 345566677788999999998 777777 44 4558854321 02234556788999999999 88
Q ss_pred CcceEeecCCCceeeeeehhh------------------heeehhhcCCCccchhhhhHhhhccccEEEeecCCCceEEE
Q 000722 180 DVPLVAFGSSDGVIRVLSMIS------------------WKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLIL 241 (1331)
Q Consensus 180 dg~~LasGs~DGtIrlWDl~t------------------~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrV 241 (1331)
||.+||+||+|+.|.||+... ++++..+. +|...|..++| +|++.+|++++.|++|.+
T Consensus 80 dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~-~H~~DV~Dv~W---sp~~~~lvS~s~DnsVii 155 (942)
T KOG0973|consen 80 DGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILR-GHDSDVLDVNW---SPDDSLLVSVSLDNSVII 155 (942)
T ss_pred CCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEe-cCCCccceecc---CCCccEEEEecccceEEE
Confidence 999999999999999998762 34666676 89999999995 889999999999999999
Q ss_pred EeccCCCccccccccceeeeccCcEEEEEechhccCCCcEEEeecCceeEeeeccchhhhcccCCCCcccccccccccCC
Q 000722 242 WSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHP 321 (1331)
Q Consensus 242 WDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~sva 321 (1331)
||..+.+.+. ++.+|.+.|-.+.|.| -|+||++-++|++|+||+..++...+++.....-..-......+.
T Consensus 156 wn~~tF~~~~------vl~~H~s~VKGvs~DP---~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlS 226 (942)
T KOG0973|consen 156 WNAKTFELLK------VLRGHQSLVKGVSWDP---IGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLS 226 (942)
T ss_pred Eccccceeee------eeecccccccceEECC---ccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecc
Confidence 9999886544 4799999999999999 899999999999999999888776666533322222334567899
Q ss_pred CCCCCceeeee--ecc---eeeeeecCccccccccccccccCCCccccccccceEEEEEEeccC------C------c--
Q 000722 322 RAPNLDILTCV--KDS---HIWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSL------Q------P-- 382 (1331)
Q Consensus 322 fspdg~lLa~s--~Dg---~IWdl~~~~~~~l~~~~~~~~~~~~~~~l~~h~~~~I~~la~sp~------~------~-- 382 (1331)
|||||++|+.. ..+ .+=-+.. .....-..|-+|.. ++.|+.|+|. + +
T Consensus 227 WSPDG~~las~nA~n~~~~~~~IieR-------------~tWk~~~~LvGH~~-p~evvrFnP~lfe~~~~ng~~~~~~~ 292 (942)
T KOG0973|consen 227 WSPDGHHLASPNAVNGGKSTIAIIER-------------GTWKVDKDLVGHSA-PVEVVRFNPKLFERNNKNGTSTQPNC 292 (942)
T ss_pred cCCCcCeecchhhccCCcceeEEEec-------------CCceeeeeeecCCC-ceEEEEeChHHhccccccCCccCCCc
Confidence 99999998543 222 1111111 11122345778988 9999999983 1 1
Q ss_pred --cEeeecceeEEEEeecCCC
Q 000722 383 --HLVATGTNVGVIISEFDPR 401 (1331)
Q Consensus 383 --~lLAtGs~DG~Il~VWDlr 401 (1331)
..+|+|+.|+.+ .||...
T Consensus 293 ~y~i~AvgSqDrSl-SVW~T~ 312 (942)
T KOG0973|consen 293 YYCIAAVGSQDRSL-SVWNTA 312 (942)
T ss_pred ceEEEEEecCCccE-EEEecC
Confidence 167889999998 799863
No 95
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=2.5e-18 Score=188.43 Aligned_cols=287 Identities=11% Similarity=0.117 Sum_probs=204.5
Q ss_pred ccccccCCCcEEEEEeecCCceeEeecCCCceeeeccccceEEeeeccCCcccchhhhhhhhhhcccccccCCCCccccc
Q 000722 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMR 83 (1331)
Q Consensus 4 l~~L~gHs~~V~~lafSPdg~~LaSgs~DGtV~VWD~~tg~~i~s~~~~~~~~i~~vspdg~~Lasgs~d~~g~~l~~l~ 83 (1331)
-+.|+.-.++|.++.|+++|.+|++++.|.+++|||..+|+.++++...+..
T Consensus 7 ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG---------------------------- 58 (311)
T KOG1446|consen 7 AKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYG---------------------------- 58 (311)
T ss_pred ccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeeccccc----------------------------
Confidence 3556677889999999999999999999999999999999999988744210
Q ss_pred CCceeEEeeecchhhHHHHhhhccccccCCcccccccccccCCCCCCCCceEEEEE-eecceeEe-eeecccCCCCCccc
Q 000722 84 GGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVIC-CVNKAIFL-DLVTMRGRDIPKQE 161 (1331)
Q Consensus 84 gg~V~sVaf~DgtIrvWdl~tg~~l~~~~~~~~~~~~~~V~svafspdg~~lLasg-s~d~iIvw-Dl~t~~~~~i~~~~ 161 (1331)
+..++|......++.+. ..|..+++ ++.+.+ .+..+.
T Consensus 59 ---------------------------------------~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNk--ylRYF~ 97 (311)
T KOG1446|consen 59 ---------------------------------------VDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNK--YLRYFP 97 (311)
T ss_pred ---------------------------------------ccEEEEecCCceEEEccCCCCCceEEEEeecCc--eEEEcC
Confidence 11122222222122222 23556655 888754 567899
Q ss_pred cccccceeeehhhcccCCCcceEeecCCCceeeeeehhhheeehhhcCCCccchhhhhHhhhccccEEEeecCCCceEEE
Q 000722 162 LDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLIL 241 (1331)
Q Consensus 162 ~h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrV 241 (1331)
+|.+.|+.++. +|-+..+++++.|++||+||++..+|.-.+. ...-..++ +.|.|-++|++.....|++
T Consensus 98 GH~~~V~sL~~-----sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~---~~~~pi~A---fDp~GLifA~~~~~~~IkL 166 (311)
T KOG1446|consen 98 GHKKRVNSLSV-----SPKDDTFLSSSLDKTVRLWDLRVKKCQGLLN---LSGRPIAA---FDPEGLIFALANGSELIKL 166 (311)
T ss_pred CCCceEEEEEe-----cCCCCeEEecccCCeEEeeEecCCCCceEEe---cCCCccee---ECCCCcEEEEecCCCeEEE
Confidence 99999999999 6678999999999999999999777765543 11222233 8999999999998889999
Q ss_pred EeccCCCccccccccceee-eccCcEEEEEechhccCCCcEEEeecCceeEeeeccchhhhcccCCCCccccccccc---
Q 000722 242 WSADHGQDSRELVPKLSLK-AHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVAS--- 317 (1331)
Q Consensus 242 WDl~tg~~~~~~~~~~~l~-gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V--- 317 (1331)
||++.-..-- -..+.+. +-....+.+.|+| +|++|+.+...+.+++.|.-+|....++ .++...-
T Consensus 167 yD~Rs~dkgP--F~tf~i~~~~~~ew~~l~FS~---dGK~iLlsT~~s~~~~lDAf~G~~~~tf------s~~~~~~~~~ 235 (311)
T KOG1446|consen 167 YDLRSFDKGP--FTTFSITDNDEAEWTDLEFSP---DGKSILLSTNASFIYLLDAFDGTVKSTF------SGYPNAGNLP 235 (311)
T ss_pred EEecccCCCC--ceeEccCCCCccceeeeEEcC---CCCEEEEEeCCCcEEEEEccCCcEeeeE------eeccCCCCcc
Confidence 9998753210 0111122 3456689999999 9999999999999999999999877664 3333221
Q ss_pred ccCCCCCCCcee-eeeecce--eeeeecCccccccccccccccCCCccccccccceEEEEEEeccCCccEeeecceeEEE
Q 000722 318 WCHPRAPNLDIL-TCVKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVI 394 (1331)
Q Consensus 318 ~svafspdg~lL-a~s~Dg~--IWdl~~~~~~~l~~~~~~~~~~~~~~~l~~h~~~~I~~la~sp~~~~lLAtGs~DG~I 394 (1331)
....|+||++++ +|+.||+ +|++.++ ..+..+.+.....+.|+.|+| .-.++++++. ..+
T Consensus 236 ~~a~ftPds~Fvl~gs~dg~i~vw~~~tg---------------~~v~~~~~~~~~~~~~~~fnP-~~~mf~sa~s-~l~ 298 (311)
T KOG1446|consen 236 LSATFTPDSKFVLSGSDDGTIHVWNLETG---------------KKVAVLRGPNGGPVSCVRFNP-RYAMFVSASS-NLV 298 (311)
T ss_pred eeEEECCCCcEEEEecCCCcEEEEEcCCC---------------cEeeEecCCCCCCccccccCC-ceeeeeecCc-eEE
Confidence 367899999966 6667787 7999765 224445553333899999999 4555555554 332
Q ss_pred EeecCC
Q 000722 395 ISEFDP 400 (1331)
Q Consensus 395 l~VWDl 400 (1331)
+|-+
T Consensus 299 --fw~p 302 (311)
T KOG1446|consen 299 --FWLP 302 (311)
T ss_pred --EEec
Confidence 6654
No 96
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.80 E-value=1.9e-19 Score=210.74 Aligned_cols=242 Identities=18% Similarity=0.261 Sum_probs=198.1
Q ss_pred CCCCCCCceEEEEEeeccee-EeeeecccC----CCCCccccccccceeeehhhcccCCCcceEeecCCCceeeeeehhh
Q 000722 126 PPPSTKGRHFLVICCVNKAI-FLDLVTMRG----RDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMIS 200 (1331)
Q Consensus 126 vafspdg~~lLasgs~d~iI-vwDl~t~~~----~~i~~~~~h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t 200 (1331)
+..+..+.++|.+|+.|+++ +|+...... ..+..+..|.++|+.+.. ..+++.|+++|.|-+|++|+...
T Consensus 30 Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL-----~~~~~tlIS~SsDtTVK~W~~~~ 104 (735)
T KOG0308|consen 30 LQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIIL-----CGNGKTLISASSDTTVKVWNAHK 104 (735)
T ss_pred ccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHh-----hcCCCceEEecCCceEEEeeccc
Confidence 44444444588888888888 786554332 246678899999999998 56888999999999999999987
Q ss_pred h--eeehhhcCCCccchhhhhHhhhccccEEEeecCCCceEEEEeccCCC--ccccc--cccceee-eccCcEEEEEech
Q 000722 201 W--KLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQ--DSREL--VPKLSLK-AHDGGVVAVELSR 273 (1331)
Q Consensus 201 ~--~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrVWDl~tg~--~~~~~--~~~~~l~-gH~~~V~svafsp 273 (1331)
+ -|+.++. .|..+|.|++. .-++..+++|||.|+.|.+||++++. .+..+ .+...+. ||..+|.+++-++
T Consensus 105 ~~~~c~stir-~H~DYVkcla~--~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~ 181 (735)
T KOG0308|consen 105 DNTFCMSTIR-THKDYVKCLAY--IAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQ 181 (735)
T ss_pred CcchhHhhhh-cccchheeeee--cccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCC
Confidence 6 5677776 89999999982 37888999999999999999999873 22221 1223344 8999999999998
Q ss_pred hccCCCcEEEeecCceeEeeeccchhhhcccCCCCcccccccccccCCCCCCCc-eeeeeecce--eeeeecCccccccc
Q 000722 274 VMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLD-ILTCVKDSH--IWAIEHPTYSALTR 350 (1331)
Q Consensus 274 ~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg~-lLa~s~Dg~--IWdl~~~~~~~l~~ 350 (1331)
.+..|++|+..+.+++||.++++.+.. ++||+.+|.++..++||. +|++|.|++ +||+...
T Consensus 182 ---t~t~ivsGgtek~lr~wDprt~~kimk------LrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQ------- 245 (735)
T KOG0308|consen 182 ---TGTIIVSGGTEKDLRLWDPRTCKKIMK------LRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQ------- 245 (735)
T ss_pred ---cceEEEecCcccceEEeccccccceee------eeccccceEEEEEcCCCCeEeecCCCceEEeeecccc-------
Confidence 789999999999999999999887665 789999999999999997 779999996 7999853
Q ss_pred cccccccCCCccccccccceEEEEEEeccCCccEeeecceeEEEEeecCCCC
Q 000722 351 PLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPRS 402 (1331)
Q Consensus 351 ~~~~~~~~~~~~~l~~h~~~~I~~la~sp~~~~lLAtGs~DG~Il~VWDlr~ 402 (1331)
.++.++..|.+ .||++..+| +-..+.+|+.||.| ..-|++.
T Consensus 246 --------rCl~T~~vH~e-~VWaL~~~~-sf~~vYsG~rd~~i-~~Tdl~n 286 (735)
T KOG0308|consen 246 --------RCLATYIVHKE-GVWALQSSP-SFTHVYSGGRDGNI-YRTDLRN 286 (735)
T ss_pred --------ceeeeEEeccC-ceEEEeeCC-CcceEEecCCCCcE-EecccCC
Confidence 56778889999 799999998 56779999999998 5777764
No 97
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=1e-18 Score=198.06 Aligned_cols=289 Identities=19% Similarity=0.249 Sum_probs=210.4
Q ss_pred CCcEEEEEeecCCceeEeecCCCceeeeccccc--eEEeeeccCCcccchhhhhhhhhhcccccccCCCCcccccCCcee
Q 000722 11 NDKIVKIQLHPTHPWLVTADASDHVSVWNWEHR--QVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRGGSVK 88 (1331)
Q Consensus 11 s~~V~~lafSPdg~~LaSgs~DGtV~VWD~~tg--~~i~s~~~~~~~~i~~vspdg~~Lasgs~d~~g~~l~~l~gg~V~ 88 (1331)
.+.|+|+.|||..+.|++|+.||+++||.+... ..++++.
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~-------------------------------------- 254 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIH-------------------------------------- 254 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeee--------------------------------------
Confidence 478999999999999999999999999987521 1111111
Q ss_pred EEeeecchhhHHHHhhhccccccCCcccccccccccCCCCCCCCceEEEEEeecc-eeEeeeecccCCCCCcccccc-cc
Q 000722 89 QVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNK-AIFLDLVTMRGRDIPKQELDN-KS 166 (1331)
Q Consensus 89 sVaf~DgtIrvWdl~tg~~l~~~~~~~~~~~~~~V~svafspdg~~lLasgs~d~-iIvwDl~t~~~~~i~~~~~h~-~~ 166 (1331)
| ...+|.+.+|.|+|...+++++... .+.||+.+.+...+....++. ..
T Consensus 255 ---l--------------------------~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~ 305 (514)
T KOG2055|consen 255 ---L--------------------------EKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKS 305 (514)
T ss_pred ---e--------------------------ccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccch
Confidence 1 0345677889999985555555554 448999988776665555553 45
Q ss_pred ceeeehhhcccCCCcceEeecCCCceeeeeehhhheeehhhcCCCccchhhhhHhhhccccEEEeecCCCceEEEEeccC
Q 000722 167 LVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADH 246 (1331)
Q Consensus 167 V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrVWDl~t 246 (1331)
+..... ++++++|+..+..|.|.|....+++.+..+. -.+.|..++ |+.++..|++++.+|.|.+||++.
T Consensus 306 ~e~FeV-----Shd~~fia~~G~~G~I~lLhakT~eli~s~K--ieG~v~~~~---fsSdsk~l~~~~~~GeV~v~nl~~ 375 (514)
T KOG2055|consen 306 MERFEV-----SHDSNFIAIAGNNGHIHLLHAKTKELITSFK--IEGVVSDFT---FSSDSKELLASGGTGEVYVWNLRQ 375 (514)
T ss_pred hheeEe-----cCCCCeEEEcccCceEEeehhhhhhhhheee--eccEEeeEE---EecCCcEEEEEcCCceEEEEecCC
Confidence 666777 7899999999999999999999999998874 677888887 678889999999999999999999
Q ss_pred CCccccccccceeeeccCcE--EEEEechhccCCCcEEEeecCceeEeeeccchhhhcccCCCCcccccccccccCCCCC
Q 000722 247 GQDSRELVPKLSLKAHDGGV--VAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAP 324 (1331)
Q Consensus 247 g~~~~~~~~~~~l~gH~~~V--~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafsp 324 (1331)
..+++.|. -++.| ++++.++ ++.+|++||+.|.|.|||.++...-...+|+..+..-...|+++.|++
T Consensus 376 ~~~~~rf~-------D~G~v~gts~~~S~---ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~ 445 (514)
T KOG2055|consen 376 NSCLHRFV-------DDGSVHGTSLCISL---NGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNH 445 (514)
T ss_pred cceEEEEe-------ecCccceeeeeecC---CCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCc
Confidence 88776542 12333 4566666 789999999999999999876554444456666677778899999999
Q ss_pred CCceee-eeec--ce--eeeeecCccccccccccccccCCCccccccccceEEEEEEeccCCccEeeecceeEEEEeecC
Q 000722 325 NLDILT-CVKD--SH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFD 399 (1331)
Q Consensus 325 dg~lLa-~s~D--g~--IWdl~~~~~~~l~~~~~~~~~~~~~~~l~~h~~~~I~~la~sp~~~~lLAtGs~DG~Il~VWD 399 (1331)
+.++|+ ||.- .. +-.+..- ..-+.-|. -...-. .|+||+|+|. +-++|.|..+|.| .+|.
T Consensus 446 d~qiLAiaS~~~knalrLVHvPS~----------TVFsNfP~--~n~~vg-~vtc~aFSP~-sG~lAvGNe~grv-~l~k 510 (514)
T KOG2055|consen 446 DAQILAIASRVKKNALRLVHVPSC----------TVFSNFPT--SNTKVG-HVTCMAFSPN-SGYLAVGNEAGRV-HLFK 510 (514)
T ss_pred chhhhhhhhhccccceEEEeccce----------eeeccCCC--CCCccc-ceEEEEecCC-CceEEeecCCCce-eeEe
Confidence 999885 4422 22 2222110 00011111 011122 7999999995 5569999999998 7998
Q ss_pred CC
Q 000722 400 PR 401 (1331)
Q Consensus 400 lr 401 (1331)
+.
T Consensus 511 L~ 512 (514)
T KOG2055|consen 511 LH 512 (514)
T ss_pred ec
Confidence 64
No 98
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.79 E-value=1.3e-19 Score=195.96 Aligned_cols=255 Identities=17% Similarity=0.290 Sum_probs=193.3
Q ss_pred ccccccCCCcEEEEEeecCCceeEeecCCCceeeeccccceEEeeeccCCcccchhhhhhhhhhcccccccCCCCccccc
Q 000722 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMR 83 (1331)
Q Consensus 4 l~~L~gHs~~V~~lafSPdg~~LaSgs~DGtV~VWD~~tg~~i~s~~~~~~~~i~~vspdg~~Lasgs~d~~g~~l~~l~ 83 (1331)
+++|-.|.+.|+++.|||....|++|+.|++|+++|+..-...+.++
T Consensus 165 IRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K--------------------------------- 211 (430)
T KOG0640|consen 165 IRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFK--------------------------------- 211 (430)
T ss_pred EeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHH---------------------------------
Confidence 78899999999999999999999999999999999986422111111
Q ss_pred CCceeEEeeecchhhHHHHhhhccccccCCcccccccccccCCCCCCCCceEEEEEeeccee-EeeeecccCCC-CCccc
Q 000722 84 GGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRD-IPKQE 161 (1331)
Q Consensus 84 gg~V~sVaf~DgtIrvWdl~tg~~l~~~~~~~~~~~~~~V~svafspdg~~lLasgs~d~iI-vwDl~t~~~~~-i~~~~ 161 (1331)
++. ....|+++.|+|.|. ++++|.+-.++ ++|++|.++-. ..-..
T Consensus 212 ---------------~~q-----------------d~~~vrsiSfHPsGe-fllvgTdHp~~rlYdv~T~QcfvsanPd~ 258 (430)
T KOG0640|consen 212 ---------------VFQ-----------------DTEPVRSISFHPSGE-FLLVGTDHPTLRLYDVNTYQCFVSANPDD 258 (430)
T ss_pred ---------------Hhh-----------------ccceeeeEeecCCCc-eEEEecCCCceeEEeccceeEeeecCccc
Confidence 100 023578899999998 88888877777 66999865421 11235
Q ss_pred cccccceeeehhhcccCCCcceEeecCCCceeeeeehhhheeehhhcCCCccchhhhhHhhhccccEEEeecCCCceEEE
Q 000722 162 LDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLIL 241 (1331)
Q Consensus 162 ~h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrV 241 (1331)
.|.+.|++|.+ ++.+++.++||.||.|+|||--+++|+.++...|.+.-.|-+ .|..+++++++.+.|..+++
T Consensus 259 qht~ai~~V~Y-----s~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa--~Ftkn~kyiLsSG~DS~vkL 331 (430)
T KOG0640|consen 259 QHTGAITQVRY-----SSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSA--VFTKNGKYILSSGKDSTVKL 331 (430)
T ss_pred ccccceeEEEe-----cCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeE--EEccCCeEEeecCCcceeee
Confidence 67899999999 789999999999999999999999999999888876544443 28999999999999999999
Q ss_pred EeccCCCccccccccceeeeccCcEEEEEechhccCCCcEEEee-cCceeEeeeccchhhhcccCCCCcccccccccccC
Q 000722 242 WSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIG-ADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCH 320 (1331)
Q Consensus 242 WDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs-~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~sv 320 (1331)
|.+.+++++.++.--. ..+....-+...|+. ...+++.-. ..+.+.-||.++...+..+ -.+|++.+..+
T Consensus 332 WEi~t~R~l~~YtGAg-~tgrq~~rtqAvFNh---tEdyVl~pDEas~slcsWdaRtadr~~l~-----slgHn~a~R~i 402 (430)
T KOG0640|consen 332 WEISTGRMLKEYTGAG-TTGRQKHRTQAVFNH---TEDYVLFPDEASNSLCSWDARTADRVALL-----SLGHNGAVRWI 402 (430)
T ss_pred eeecCCceEEEEecCC-cccchhhhhhhhhcC---ccceEEccccccCceeeccccchhhhhhc-----ccCCCCCceEE
Confidence 9999998876532111 011111223445665 556666544 3678999999988765543 36899999999
Q ss_pred CCCCCCc-eeeeeecce--eeee
Q 000722 321 PRAPNLD-ILTCVKDSH--IWAI 340 (1331)
Q Consensus 321 afspdg~-lLa~s~Dg~--IWdl 340 (1331)
.-||.+. +++||.|-+ +|--
T Consensus 403 ~HSP~~p~FmTcsdD~raRFWyr 425 (430)
T KOG0640|consen 403 VHSPVEPAFMTCSDDFRARFWYR 425 (430)
T ss_pred EeCCCCCceeeecccceeeeeee
Confidence 9999987 778998875 7753
No 99
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.79 E-value=1.6e-19 Score=190.54 Aligned_cols=247 Identities=17% Similarity=0.238 Sum_probs=195.5
Q ss_pred ccccccCCCcEEEEEeecCCceeEeecCCCceeeeccccceEEeeeccCCcccchhhh--hhhhhhcccccccCCCCccc
Q 000722 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVG--AKLEKLAEGELEHKGKPTEA 81 (1331)
Q Consensus 4 l~~L~gHs~~V~~lafSPdg~~LaSgs~DGtV~VWD~~tg~~i~s~~~~~~~~i~~vs--pdg~~Lasgs~d~~g~~l~~ 81 (1331)
+.+|+||.+.|++..+..+-..-++++.|-+-+|||.-+|..+++|+-.| .++.++ .+...|.+++
T Consensus 52 igtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~hkh--ivk~~af~~ds~~lltgg---------- 119 (334)
T KOG0278|consen 52 IGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFEHKH--IVKAVAFSQDSNYLLTGG---------- 119 (334)
T ss_pred EEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhhhhh--eeeeEEecccchhhhccc----------
Confidence 46899999999999999998899999999999999999999999998443 344433 4555555543
Q ss_pred ccCCceeEEeeecchhhHHHHhhhccccccCCcccccccccccCCCCCCCCceEEEEEeeccee-EeeeecccCCCCCcc
Q 000722 82 MRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQ 160 (1331)
Q Consensus 82 l~gg~V~sVaf~DgtIrvWdl~tg~~l~~~~~~~~~~~~~~V~svafspdg~~lLasgs~d~iI-vwDl~t~~~~~i~~~ 160 (1331)
.+..+|++|++..+.- +.....+...|+.+.|....+ .+.+..+|+.+ +||..++.. +.++
T Consensus 120 -----------~ekllrvfdln~p~Ap----p~E~~ghtg~Ir~v~wc~eD~-~iLSSadd~tVRLWD~rTgt~--v~sL 181 (334)
T KOG0278|consen 120 -----------QEKLLRVFDLNRPKAP----PKEISGHTGGIRTVLWCHEDK-CILSSADDKTVRLWDHRTGTE--VQSL 181 (334)
T ss_pred -----------hHHHhhhhhccCCCCC----chhhcCCCCcceeEEEeccCc-eEEeeccCCceEEEEeccCcE--EEEE
Confidence 3788999999877643 223333477788888888776 55555777766 899998753 2222
Q ss_pred ccccccceeeehhhcccCCCcceEeecCCCceeeeeehhhheeehhhcCCCccchhhhhHhhhccccEEEeecCCCceEE
Q 000722 161 ELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLI 240 (1331)
Q Consensus 161 ~~h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIr 240 (1331)
.-+..|+++.+ +++|++|.++ ..+.|.+||..+...++.+. -...|.+.. .+|+...++.|+.|..++
T Consensus 182 -~~~s~VtSlEv-----s~dG~ilTia-~gssV~Fwdaksf~~lKs~k--~P~nV~SAS---L~P~k~~fVaGged~~~~ 249 (334)
T KOG0278|consen 182 -EFNSPVTSLEV-----SQDGRILTIA-YGSSVKFWDAKSFGLLKSYK--MPCNVESAS---LHPKKEFFVAGGEDFKVY 249 (334)
T ss_pred -ecCCCCcceee-----ccCCCEEEEe-cCceeEEeccccccceeecc--Ccccccccc---ccCCCceEEecCcceEEE
Confidence 23678999999 6788866655 67789999999988888774 455677776 789999999999999999
Q ss_pred EEeccCCCccccccccceeeeccCcEEEEEechhccCCCcEEEeecCceeEeeeccchhh
Q 000722 241 LWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKE 300 (1331)
Q Consensus 241 VWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~ 300 (1331)
.||..++..+..+ .++|-++|.|+.|+| +|...++||.||+||+|.+..++.
T Consensus 250 kfDy~TgeEi~~~-----nkgh~gpVhcVrFSP---dGE~yAsGSEDGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 250 KFDYNTGEEIGSY-----NKGHFGPVHCVRFSP---DGELYASGSEDGTIRLWQTTPGKT 301 (334)
T ss_pred EEeccCCceeeec-----ccCCCCceEEEEECC---CCceeeccCCCceEEEEEecCCCc
Confidence 9999999866541 389999999999999 999999999999999999876553
No 100
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.79 E-value=6.7e-19 Score=206.22 Aligned_cols=351 Identities=14% Similarity=0.122 Sum_probs=235.8
Q ss_pred CcEEEEEeecCCceeEeecCCCceeeeccccceEEeeeccCCcccchhhh-hhhhhhcccccccCC-CCcc-ccc-CCce
Q 000722 12 DKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVG-AKLEKLAEGELEHKG-KPTE-AMR-GGSV 87 (1331)
Q Consensus 12 ~~V~~lafSPdg~~LaSgs~DGtV~VWD~~tg~~i~s~~~~~~~~i~~vs-pdg~~Lasgs~d~~g-~~l~-~l~-gg~V 87 (1331)
.--.||+.+ .++|++|+.+|+|++++.++-..+.++...|.-+..... .....+.+......- .++. .+. ...-
T Consensus 261 TnAnCIcVs--~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~k 338 (1080)
T KOG1408|consen 261 TNANCICVS--SRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTDK 338 (1080)
T ss_pred cccceeeee--cceEEEeeccceeeecCcchhhhccccccccccccchhhcccccccccccCcccCCceeEEEecCCCce
Confidence 345567666 569999999999999999987777777655433322211 111222222111100 0111 111 1222
Q ss_pred eEEeeecchhhHHHHhhhccccccCCcccccccccccCCCCCC------------CCceEEEEEeeccee-EeeeecccC
Q 000722 88 KQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPST------------KGRHFLVICCVNKAI-FLDLVTMRG 154 (1331)
Q Consensus 88 ~sVaf~DgtIrvWdl~tg~~l~~~~~~~~~~~~~~V~svafsp------------dg~~lLasgs~d~iI-vwDl~t~~~ 154 (1331)
.++.+.|+.+.|||+..-+.... ......| ...||++.--| .+ .|++|+.|+.| +||+.....
T Consensus 339 lscVYndhSlYvWDvrD~~kvgk-~~s~lyH-S~ciW~Ve~~p~nv~~~~~aclp~~--cF~TCSsD~TIRlW~l~~ctn 414 (1080)
T KOG1408|consen 339 LSCVYNDHSLYVWDVRDVNKVGK-CSSMLYH-SACIWDVENLPCNVHSPTAACLPRG--CFTTCSSDGTIRLWDLAFCTN 414 (1080)
T ss_pred EEEEEcCceEEEEeccccccccc-eeeeeec-cceeeeeccccccccCcccccCCcc--ceeEecCCCcEEEeecccccc
Confidence 34445799999999876543211 1222333 45566554333 23 57888888877 788754110
Q ss_pred CC-------------CCc----------------------cccccccceeeehhhcccCCCcceEeecCCCceeeeeehh
Q 000722 155 RD-------------IPK----------------------QELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMI 199 (1331)
Q Consensus 155 ~~-------------i~~----------------------~~~h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~ 199 (1331)
.. +.. .-.....++|++. +|+|++|++|..-|++||||+.
T Consensus 415 n~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~v-----Sp~gqhLAsGDr~GnlrVy~Lq 489 (1080)
T KOG1408|consen 415 NQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAV-----SPDGQHLASGDRGGNLRVYDLQ 489 (1080)
T ss_pred cceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEE-----CCCcceecccCccCceEEEEeh
Confidence 00 000 0011346899999 8899999999999999999999
Q ss_pred hheeehhhcCCCccchhhhhHhhhcc-ccEEEeecCCCceEEEEeccCCCccccccccceeeeccCcEEEEEechh----
Q 000722 200 SWKLVRRYTGGHKGSISCLMTFMASS-GEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRV---- 274 (1331)
Q Consensus 200 t~~~v~~~~~gH~~~V~~vawf~~sp-dg~lLaSgs~DgtIrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~---- 274 (1331)
.-+....+. .|...|.|+. |.++. ...+|++++.|+.|+|||+...- .+..++.+|...|+++.|.-.
T Consensus 490 ~l~~~~~~e-AHesEilcLe-yS~p~~~~kLLASasrdRlIHV~Dv~rny-----~l~qtld~HSssITsvKFa~~gln~ 562 (1080)
T KOG1408|consen 490 ELEYTCFME-AHESEILCLE-YSFPVLTNKLLASASRDRLIHVYDVKRNY-----DLVQTLDGHSSSITSVKFACNGLNR 562 (1080)
T ss_pred hhhhhhhee-cccceeEEEe-ecCchhhhHhhhhccCCceEEEEeccccc-----chhhhhcccccceeEEEEeecCCce
Confidence 888877776 9999999998 32222 34689999999999999986432 223335555555555555210
Q ss_pred ------------------------------------------ccCCCcEEEeecCceeEeeeccchhhhcccCCCCcccc
Q 000722 275 ------------------------------------------MGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLAC 312 (1331)
Q Consensus 275 ------------------------------------------~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~ 312 (1331)
.++..++++++.|+.|+|||+.+++..+.|+. -.+
T Consensus 563 ~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKg---s~~ 639 (1080)
T KOG1408|consen 563 KMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKG---SRD 639 (1080)
T ss_pred EEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecc---ccc
Confidence 02678999999999999999999999888765 366
Q ss_pred cccccccCCCCCCCceeeee-ecce--eeeeecCccccccccccccccCCCccccccccceEEEEEEeccCCccEeeecc
Q 000722 313 HSVASWCHPRAPNLDILTCV-KDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGT 389 (1331)
Q Consensus 313 H~~~V~svafspdg~lLa~s-~Dg~--IWdl~~~~~~~l~~~~~~~~~~~~~~~l~~h~~~~I~~la~sp~~~~lLAtGs 389 (1331)
|.+....+...|.|-+|+++ .|.+ ++|+.++ .++....+|+. .|+.+.|.++ -.+|++.+
T Consensus 640 ~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sg---------------EcvA~m~GHsE-~VTG~kF~nD-CkHlISvs 702 (1080)
T KOG1408|consen 640 HEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSG---------------ECVAQMTGHSE-AVTGVKFLND-CKHLISVS 702 (1080)
T ss_pred CCCceEEEEECCCccEEEEeecCCceEEEEeccc---------------hhhhhhcCcch-heeeeeeccc-chhheeec
Confidence 77777788899999988654 5555 7888765 45777889999 9999999996 44588999
Q ss_pred eeEEEEeecCCC
Q 000722 390 NVGVIISEFDPR 401 (1331)
Q Consensus 390 ~DG~Il~VWDlr 401 (1331)
.||+| .||.+.
T Consensus 703 gDgCI-FvW~lp 713 (1080)
T KOG1408|consen 703 GDGCI-FVWKLP 713 (1080)
T ss_pred CCceE-EEEECc
Confidence 99998 799864
No 101
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.79 E-value=9.6e-19 Score=189.66 Aligned_cols=271 Identities=12% Similarity=0.128 Sum_probs=192.9
Q ss_pred cCCCcEEEEEeec-CCceeEeecCCCceeeecccc-ceEEeeeccCCcccchhhhhhhhhhcccccccCCCCcccccCCc
Q 000722 9 PTNDKIVKIQLHP-THPWLVTADASDHVSVWNWEH-RQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRGGS 86 (1331)
Q Consensus 9 gHs~~V~~lafSP-dg~~LaSgs~DGtV~VWD~~t-g~~i~s~~~~~~~~i~~vspdg~~Lasgs~d~~g~~l~~l~gg~ 86 (1331)
.-.+.|.+|+||| ...+++.++.||+||+|+++. |..+.+.
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka------------------------------------- 67 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKA------------------------------------- 67 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchh-------------------------------------
Confidence 3467899999999 455777899999999999874 2221111
Q ss_pred eeEEeeecchhhHHHHhhhccccccCCcccccccccccCCCCCCCCceEEEEEeecceeEeeeecccCCCCCcccccccc
Q 000722 87 VKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFLDLVTMRGRDIPKQELDNKS 166 (1331)
Q Consensus 87 V~sVaf~DgtIrvWdl~tg~~l~~~~~~~~~~~~~~V~svafspdg~~lLasgs~d~iIvwDl~t~~~~~i~~~~~h~~~ 166 (1331)
...+..+|.+++|+.||...++.+++...-+||+.+++ +.....|..+
T Consensus 68 -----------------------------~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q---~~~v~~Hd~p 115 (347)
T KOG0647|consen 68 -----------------------------QQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ---VSQVAAHDAP 115 (347)
T ss_pred -----------------------------hhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC---eeeeeecccc
Confidence 01114556677788899856666666666699999974 3456889999
Q ss_pred ceeeehhhcccCCCcceEeecCCCceeeeeehhhheeehhhcCCCccchhhhhHhhhccccEEEeecCCCceEEEEeccC
Q 000722 167 LVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADH 246 (1331)
Q Consensus 167 V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrVWDl~t 246 (1331)
|.++.|.+ ......|++||.|.+|+.||.+....+.++. -...|+++.. ...+++.+..++.|.+|++++
T Consensus 116 vkt~~wv~---~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~--LPeRvYa~Dv-----~~pm~vVata~r~i~vynL~n 185 (347)
T KOG0647|consen 116 VKTCHWVP---GMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ--LPERVYAADV-----LYPMAVVATAERHIAVYNLEN 185 (347)
T ss_pred eeEEEEec---CCCcceeEecccccceeecccCCCCeeeeee--ccceeeehhc-----cCceeEEEecCCcEEEEEcCC
Confidence 99999975 2345689999999999999999888887764 4455665541 235788899999999999987
Q ss_pred CCccccccccceeeeccCcEEEEEechhccCCCcEEEeecCceeEeeeccchhhhcccCCCCcccccc---------ccc
Q 000722 247 GQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHS---------VAS 317 (1331)
Q Consensus 247 g~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~---------~~V 317 (1331)
+.....- .-..-.-.+.||+..+ +.+..+.|+-+|.+-|..+..+.....| .+.+|. -.|
T Consensus 186 ~~te~k~----~~SpLk~Q~R~va~f~---d~~~~alGsiEGrv~iq~id~~~~~~nF----tFkCHR~~~~~~~~VYaV 254 (347)
T KOG0647|consen 186 PPTEFKR----IESPLKWQTRCVACFQ---DKDGFALGSIEGRVAIQYIDDPNPKDNF----TFKCHRSTNSVNDDVYAV 254 (347)
T ss_pred Ccchhhh----hcCcccceeeEEEEEe---cCCceEeeeecceEEEEecCCCCccCce----eEEEeccCCCCCCceEEe
Confidence 6432210 0011223478999988 7777899999999999999886432221 234444 257
Q ss_pred ccCCCCCCC-ceeeeeecce--eeeeecCccccccccccccccCCCccccccccceEEEEEEeccCCccEe
Q 000722 318 WCHPRAPNL-DILTCVKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLV 385 (1331)
Q Consensus 318 ~svafspdg-~lLa~s~Dg~--IWdl~~~~~~~l~~~~~~~~~~~~~~~l~~h~~~~I~~la~sp~~~~lL 385 (1331)
.+++|+|.. .+++.|.||+ +||-+.+. .+.+...+.. +|+|..|+.++..+.
T Consensus 255 Nsi~FhP~hgtlvTaGsDGtf~FWDkdar~---------------kLk~s~~~~q-pItcc~fn~~G~ifa 309 (347)
T KOG0647|consen 255 NSIAFHPVHGTLVTAGSDGTFSFWDKDART---------------KLKTSETHPQ-PITCCSFNRNGSIFA 309 (347)
T ss_pred cceEeecccceEEEecCCceEEEecchhhh---------------hhhccCcCCC-ccceeEecCCCCEEE
Confidence 799999974 4668999997 79977532 2344556667 999999999644433
No 102
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.79 E-value=7.1e-19 Score=197.86 Aligned_cols=243 Identities=18% Similarity=0.252 Sum_probs=189.8
Q ss_pred ccccccCCCcEEEEEeecCCceeEeecCCCceeeeccccceEEeeeccCCcccchhhhhhhhhhcccccccCCCCccccc
Q 000722 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMR 83 (1331)
Q Consensus 4 l~~L~gHs~~V~~lafSPdg~~LaSgs~DGtV~VWD~~tg~~i~s~~~~~~~~i~~vspdg~~Lasgs~d~~g~~l~~l~ 83 (1331)
+.+|+||+..|+.+.|||+...+++++.|..|+||......+....
T Consensus 254 l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~---------------------------------- 299 (506)
T KOG0289|consen 254 LATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSS---------------------------------- 299 (506)
T ss_pred hhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCcccc----------------------------------
Confidence 5689999999999999999999999999999999997642211111
Q ss_pred CCceeEEeeecchhhHHHHhhhccccccCCcccccccccccCCCCCCCCceEEEEEeecceeEe-eeecccCCCCCcccc
Q 000722 84 GGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFL-DLVTMRGRDIPKQEL 162 (1331)
Q Consensus 84 gg~V~sVaf~DgtIrvWdl~tg~~l~~~~~~~~~~~~~~V~svafspdg~~lLasgs~d~iIvw-Dl~t~~~~~i~~~~~ 162 (1331)
..|...|+.+..+|.|+ +|+++++|+.+.| |+.++....+..-..
T Consensus 300 ---------------------------------~~h~~~V~~ls~h~tge-YllsAs~d~~w~Fsd~~~g~~lt~vs~~~ 345 (506)
T KOG0289|consen 300 ---------------------------------RPHEEPVTGLSLHPTGE-YLLSASNDGTWAFSDISSGSQLTVVSDET 345 (506)
T ss_pred ---------------------------------ccccccceeeeeccCCc-EEEEecCCceEEEEEccCCcEEEEEeecc
Confidence 11255677788899998 8888999998866 888865433222222
Q ss_pred ccccceeeehhhcccCCCcceEeecCCCceeeeeehhhheeehhhcCCCccchhhhhHhhhccccEEEeecCCCceEEEE
Q 000722 163 DNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILW 242 (1331)
Q Consensus 163 h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrVW 242 (1331)
..-.+++.+| +|||-++.+|+.||.|+|||+.++..+..|. +|+++|..++ |+.+|-+|++++.|+.|++|
T Consensus 346 s~v~~ts~~f-----HpDgLifgtgt~d~~vkiwdlks~~~~a~Fp-ght~~vk~i~---FsENGY~Lat~add~~V~lw 416 (506)
T KOG0289|consen 346 SDVEYTSAAF-----HPDGLIFGTGTPDGVVKIWDLKSQTNVAKFP-GHTGPVKAIS---FSENGYWLATAADDGSVKLW 416 (506)
T ss_pred ccceeEEeeE-----cCCceEEeccCCCceEEEEEcCCccccccCC-CCCCceeEEE---eccCceEEEEEecCCeEEEE
Confidence 3446899999 5799999999999999999999999999997 8999999998 89999999999999999999
Q ss_pred eccCCCccccccccceeeeccCcEEEEEechhccCCCcEEEeecCceeEeeeccchhhhcccCCCCcccccccccccCCC
Q 000722 243 SADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPR 322 (1331)
Q Consensus 243 Dl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svaf 322 (1331)
|++..+..+++ .+. ...+|.++.|.+ .|.+|+.+|.|=+|++++-.+. .+.....+..|.+..+++.|
T Consensus 417 DLRKl~n~kt~----~l~-~~~~v~s~~fD~---SGt~L~~~g~~l~Vy~~~k~~k----~W~~~~~~~~~sg~st~v~F 484 (506)
T KOG0289|consen 417 DLRKLKNFKTI----QLD-EKKEVNSLSFDQ---SGTYLGIAGSDLQVYICKKKTK----SWTEIKELADHSGLSTGVRF 484 (506)
T ss_pred Eehhhccccee----ecc-ccccceeEEEcC---CCCeEEeecceeEEEEEecccc----cceeeehhhhcccccceeee
Confidence 99987654432 222 223799999998 8999999988877777763321 12223346788888889999
Q ss_pred CCCCceee-eeecc
Q 000722 323 APNLDILT-CVKDS 335 (1331)
Q Consensus 323 spdg~lLa-~s~Dg 335 (1331)
..+.++++ +|.|.
T Consensus 485 g~~aq~l~s~smd~ 498 (506)
T KOG0289|consen 485 GEHAQYLASTSMDA 498 (506)
T ss_pred cccceEEeeccchh
Confidence 88888774 55554
No 103
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.79 E-value=8.4e-19 Score=203.29 Aligned_cols=304 Identities=16% Similarity=0.240 Sum_probs=212.1
Q ss_pred ccccCCCcEEEEEeecCCceeEeecCCCceeeeccccceEEeeeccCCcccchhhh----hhhhhhcccccccCCCCccc
Q 000722 6 AFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVG----AKLEKLAEGELEHKGKPTEA 81 (1331)
Q Consensus 6 ~L~gHs~~V~~lafSPdg~~LaSgs~DGtV~VWD~~tg~~i~s~~~~~~~~i~~vs----pdg~~Lasgs~d~~g~~l~~ 81 (1331)
.|+||++.|.||..+|.|.||++|+.||+|+||.+.||.|++++.... .|.++. ++...|+..- +.++.+
T Consensus 395 vyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~--~I~~vaw~P~~~~~vLAvA~----~~~~~i 468 (733)
T KOG0650|consen 395 VYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDS--EIRSVAWNPLSDLCVLAVAV----GECVLI 468 (733)
T ss_pred eEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecc--eeEEEEecCCCCceeEEEEe----cCceEE
Confidence 479999999999999999999999999999999999999999988543 455554 2333333321 111111
Q ss_pred ccC--C----------cee---EEeeecchhhHHHHhhhccccccCCcccccccccccCCCCCCCCceEEEEEee-c---
Q 000722 82 MRG--G----------SVK---QVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCV-N--- 142 (1331)
Q Consensus 82 l~g--g----------~V~---sVaf~DgtIrvWdl~tg~~l~~~~~~~~~~~~~~V~svafspdg~~lLasgs~-d--- 142 (1331)
+.. | ... .-.+.+..+..|.-.............. .+...|+.+.||..|. +|++.+. +
T Consensus 469 vnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I-~~~k~i~~vtWHrkGD-YlatV~~~~~~~ 546 (733)
T KOG0650|consen 469 VNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVI-KHPKSIRQVTWHRKGD-YLATVMPDSGNK 546 (733)
T ss_pred eCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEE-ecCCccceeeeecCCc-eEEEeccCCCcc
Confidence 100 0 000 0112456666776443222211111222 2367899999999999 5555443 2
Q ss_pred ceeEeeeecccCCCCCccccccccceeeehhhcccCCCcceEeecCCCceeeeeehhhheeehhhcCCCccchhhhhHhh
Q 000722 143 KAIFLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFM 222 (1331)
Q Consensus 143 ~iIvwDl~t~~~~~i~~~~~h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~~~v~~~~~gH~~~V~~vawf~ 222 (1331)
.+++.++...+.+ .-+....+.|.++.|| |...++++++. ..|||||+.....++.+. .....|..++
T Consensus 547 ~VliHQLSK~~sQ--~PF~kskG~vq~v~FH-----Ps~p~lfVaTq-~~vRiYdL~kqelvKkL~-tg~kwiS~ms--- 614 (733)
T KOG0650|consen 547 SVLIHQLSKRKSQ--SPFRKSKGLVQRVKFH-----PSKPYLFVATQ-RSVRIYDLSKQELVKKLL-TGSKWISSMS--- 614 (733)
T ss_pred eEEEEeccccccc--CchhhcCCceeEEEec-----CCCceEEEEec-cceEEEehhHHHHHHHHh-cCCeeeeeee---
Confidence 2334466554332 2344556789999995 56778888765 579999999988888887 5566777776
Q ss_pred hccccEEEeecCCCceEEEEeccCCCccccccccceeeeccCcEEEEEechhccCCCcEEEeecCceeEeeeccchhhh-
Q 000722 223 ASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKEL- 301 (1331)
Q Consensus 223 ~spdg~lLaSgs~DgtIrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l- 301 (1331)
.+|.|..|+.|+.|+.+..+|+.-.. .+..++.-|...|++|+||+ .-+++++|++||++.|+.-.-..-+
T Consensus 615 ihp~GDnli~gs~d~k~~WfDldlss-----kPyk~lr~H~~avr~Va~H~---ryPLfas~sdDgtv~Vfhg~VY~Dl~ 686 (733)
T KOG0650|consen 615 IHPNGDNLILGSYDKKMCWFDLDLSS-----KPYKTLRLHEKAVRSVAFHK---RYPLFASGSDDGTVIVFHGMVYNDLL 686 (733)
T ss_pred ecCCCCeEEEecCCCeeEEEEcccCc-----chhHHhhhhhhhhhhhhhcc---ccceeeeecCCCcEEEEeeeeehhhh
Confidence 89999999999999999999997654 24456788999999999999 7899999999999999864322211
Q ss_pred --cccCCCCcccccccc----cccCCCCCCCcee-eeeeccee
Q 000722 302 --RRIKPVPKLACHSVA----SWCHPRAPNLDIL-TCVKDSHI 337 (1331)
Q Consensus 302 --~~~~~~~~l~~H~~~----V~svafspdg~lL-a~s~Dg~I 337 (1331)
-.+.++..+.+|... |..+.|||....| ++|.|++|
T Consensus 687 qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~ti 729 (733)
T KOG0650|consen 687 QNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTI 729 (733)
T ss_pred cCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceE
Confidence 113455668888865 8888899998855 78888863
No 104
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.78 E-value=7.6e-19 Score=187.48 Aligned_cols=256 Identities=14% Similarity=0.150 Sum_probs=198.5
Q ss_pred ccccccCCCCCCCCceEEEEEeeccee-EeeeecccCCCCCccccccccceeeehhhcccCCCcceEeecCCCceeeeee
Q 000722 119 VTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLS 197 (1331)
Q Consensus 119 ~~~~V~svafspdg~~lLasgs~d~iI-vwDl~t~~~~~i~~~~~h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWD 197 (1331)
|..+++.+.|+.+|. +|.+|+.|... +|-... +..+.+..+|.+.|.|++. +.+.+.+++|+.|.++++||
T Consensus 9 HERplTqiKyN~eGD-LlFscaKD~~~~vw~s~n--GerlGty~GHtGavW~~Di-----d~~s~~liTGSAD~t~kLWD 80 (327)
T KOG0643|consen 9 HERPLTQIKYNREGD-LLFSCAKDSTPTVWYSLN--GERLGTYDGHTGAVWCCDI-----DWDSKHLITGSADQTAKLWD 80 (327)
T ss_pred CccccceEEecCCCc-EEEEecCCCCceEEEecC--CceeeeecCCCceEEEEEe-----cCCcceeeeccccceeEEEE
Confidence 378899999999998 88999988887 884434 3357789999999999999 67899999999999999999
Q ss_pred hhhheeehhhcCCCccchhhhhHhhhccccEEEeecCC-----CceEEEEeccCCCc-cccccccceeeeccCcEEEEEe
Q 000722 198 MISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGS-----DGLLILWSADHGQD-SRELVPKLSLKAHDGGVVAVEL 271 (1331)
Q Consensus 198 l~t~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~-----DgtIrVWDl~tg~~-~~~~~~~~~l~gH~~~V~svaf 271 (1331)
+.+|+++..+. ....|..+. |+.+|++++.+.. .+.|.++|++.... ...-.|...+..++..++.+-|
T Consensus 81 v~tGk~la~~k--~~~~Vk~~~---F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~W 155 (327)
T KOG0643|consen 81 VETGKQLATWK--TNSPVKRVD---FSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALW 155 (327)
T ss_pred cCCCcEEEEee--cCCeeEEEe---eccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeee
Confidence 99999999885 667888887 8999988876644 46799999985431 1112355667788899999999
Q ss_pred chhccCCCcEEEeecCceeEeeeccchhhhcccCCCCcccccccccccCCCCCCCc-eeeeeecce--eeeeecCccccc
Q 000722 272 SRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLD-ILTCVKDSH--IWAIEHPTYSAL 348 (1331)
Q Consensus 272 sp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg~-lLa~s~Dg~--IWdl~~~~~~~l 348 (1331)
.| -+++|++|..||.|.+||.++|+.+.. ....|+..|+.+.+++|.. +++++.|.+ +||+.+....+.
T Consensus 156 g~---l~~~ii~Ghe~G~is~~da~~g~~~v~-----s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kt 227 (327)
T KOG0643|consen 156 GP---LGETIIAGHEDGSISIYDARTGKELVD-----SDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKT 227 (327)
T ss_pred cc---cCCEEEEecCCCcEEEEEcccCceeee-----chhhhccccccccccCCcceEEecccCccceeeeccceeeEEE
Confidence 99 789999999999999999999865432 2567888999999999988 558888875 899875422110
Q ss_pred ---cc--------cc------------cccc-----------------cCCCccccccccceEEEEEEeccCCccEeeec
Q 000722 349 ---TR--------PL------------CELS-----------------SLVPPQVLAHHKKLRVYCMVAHSLQPHLVATG 388 (1331)
Q Consensus 349 ---~~--------~~------------~~~~-----------------~~~~~~~l~~h~~~~I~~la~sp~~~~lLAtG 388 (1331)
.+ ++ .++. -...+..+.+|-. +|++++||| ++...++|
T Consensus 228 y~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFG-PINsvAfhP-dGksYsSG 305 (327)
T KOG0643|consen 228 YTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFG-PINSVAFHP-DGKSYSSG 305 (327)
T ss_pred eeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhcccccccc-CcceeEECC-CCcccccC
Confidence 00 00 0000 0012344567778 999999999 58889999
Q ss_pred ceeEEEEeec
Q 000722 389 TNVGVIISEF 398 (1331)
Q Consensus 389 s~DG~Il~VW 398 (1331)
+.||.| |+.
T Consensus 306 GEDG~V-R~h 314 (327)
T KOG0643|consen 306 GEDGYV-RLH 314 (327)
T ss_pred CCCceE-EEE
Confidence 999998 665
No 105
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.78 E-value=5.1e-19 Score=200.94 Aligned_cols=282 Identities=16% Similarity=0.204 Sum_probs=208.6
Q ss_pred ccCCCcEEEEEeecCCceeEeecCCCceeeeccccceEEeeeccCCcccchhhhhhhhhhcccccccCCCCcccccCCce
Q 000722 8 RPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRGGSV 87 (1331)
Q Consensus 8 ~gHs~~V~~lafSPdg~~LaSgs~DGtV~VWD~~tg~~i~s~~~~~~~~i~~vspdg~~Lasgs~d~~g~~l~~l~gg~V 87 (1331)
-.|..-|..+..|...+++.||+ .|.|+|||+.... .. .+|
T Consensus 416 L~HGEvVcAvtIS~~trhVyTgG-kgcVKVWdis~pg--~k------------------------------------~Pv 456 (705)
T KOG0639|consen 416 LAHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISQPG--NK------------------------------------SPV 456 (705)
T ss_pred hccCcEEEEEEecCCcceeEecC-CCeEEEeeccCCC--CC------------------------------------Ccc
Confidence 46989999999999999999986 5789999986310 00 010
Q ss_pred eEEeeecchhhHHHHhhhccccccCCcccccccccccCCCCCCCCceEEEEEeeccee-EeeeecccCCCCCcccccccc
Q 000722 88 KQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQELDNKS 166 (1331)
Q Consensus 88 ~sVaf~DgtIrvWdl~tg~~l~~~~~~~~~~~~~~V~svafspdg~~lLasgs~d~iI-vwDl~t~~~~~i~~~~~h~~~ 166 (1331)
..+ ..+ .....++++.+.|||+ -|++|+.-..+ +||+.....+....+....-.
T Consensus 457 sqL----------------------dcl--~rdnyiRSckL~pdgr-tLivGGeastlsiWDLAapTprikaeltssapa 511 (705)
T KOG0639|consen 457 SQL----------------------DCL--NRDNYIRSCKLLPDGR-TLIVGGEASTLSIWDLAAPTPRIKAELTSSAPA 511 (705)
T ss_pred ccc----------------------ccc--CcccceeeeEecCCCc-eEEeccccceeeeeeccCCCcchhhhcCCcchh
Confidence 000 000 0144577788899998 55555555555 999987543321122222335
Q ss_pred ceeeehhhcccCCCcceEeecCCCceeeeeehhhheeehhhcCCCccchhhhhHhhhccccEEEeecCCCceEEEEeccC
Q 000722 167 LVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADH 246 (1331)
Q Consensus 167 V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrVWDl~t 246 (1331)
...++. +||.+..++++.||.|+|||+.+...++.|. ||+..+.||. .+++|..|-||+.|.+||.||+++
T Consensus 512 CyALa~-----spDakvcFsccsdGnI~vwDLhnq~~Vrqfq-GhtDGascId---is~dGtklWTGGlDntvRcWDlre 582 (705)
T KOG0639|consen 512 CYALAI-----SPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQ-GHTDGASCID---ISKDGTKLWTGGLDNTVRCWDLRE 582 (705)
T ss_pred hhhhhc-----CCccceeeeeccCCcEEEEEcccceeeeccc-CCCCCceeEE---ecCCCceeecCCCccceeehhhhh
Confidence 566777 7899999999999999999999999999998 9999999998 899999999999999999999999
Q ss_pred CCccccccccceeeeccCcEEEEEechhccCCCcEEEeecCceeEeeeccchhhhcccCCCCcccccccccccCCCCCCC
Q 000722 247 GQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNL 326 (1331)
Q Consensus 247 g~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg 326 (1331)
+..+.+ ......|.++-++| .+.+++.|-.++.+.|-.....+.. .+.-|...|.++.|.+.|
T Consensus 583 grqlqq-------hdF~SQIfSLg~cP---~~dWlavGMens~vevlh~skp~ky-------qlhlheScVLSlKFa~cG 645 (705)
T KOG0639|consen 583 GRQLQQ-------HDFSSQIFSLGYCP---TGDWLAVGMENSNVEVLHTSKPEKY-------QLHLHESCVLSLKFAYCG 645 (705)
T ss_pred hhhhhh-------hhhhhhheecccCC---CccceeeecccCcEEEEecCCccce-------eecccccEEEEEEecccC
Confidence 876543 22345699999999 8999999999999888776543322 257788999999999999
Q ss_pred cee-eeeecce--eeeeecCccccccccccccccCCCccccccccceEEEEEEeccCCccEeeecceeEEEEeec
Q 000722 327 DIL-TCVKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEF 398 (1331)
Q Consensus 327 ~lL-a~s~Dg~--IWdl~~~~~~~l~~~~~~~~~~~~~~~l~~h~~~~I~~la~sp~~~~lLAtGs~DG~Il~VW 398 (1331)
+++ +.|.|+- .|..--+. ..|.......|.|++.|. +..+|+||+.|..- .||
T Consensus 646 kwfvStGkDnlLnawrtPyGa-----------------siFqskE~SsVlsCDIS~-ddkyIVTGSGdkkA-TVY 701 (705)
T KOG0639|consen 646 KWFVSTGKDNLLNAWRTPYGA-----------------SIFQSKESSSVLSCDISF-DDKYIVTGSGDKKA-TVY 701 (705)
T ss_pred ceeeecCchhhhhhccCcccc-----------------ceeeccccCcceeeeecc-CceEEEecCCCcce-EEE
Confidence 955 7788885 68765431 122333333799999998 57779999998553 344
No 106
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.78 E-value=1.3e-18 Score=198.00 Aligned_cols=265 Identities=16% Similarity=0.202 Sum_probs=195.2
Q ss_pred cccCCCcEEEEEeecCCc-eeEeecCCCceeeeccccceEEeeeccCCcccchhhhhhhhhhcccccccCCCCcccccCC
Q 000722 7 FRPTNDKIVKIQLHPTHP-WLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRGG 85 (1331)
Q Consensus 7 L~gHs~~V~~lafSPdg~-~LaSgs~DGtV~VWD~~tg~~i~s~~~~~~~~i~~vspdg~~Lasgs~d~~g~~l~~l~gg 85 (1331)
---|.+.|+.+.+-|..+ .+++.+..+.|.|||+.+..-....... | .
T Consensus 120 ~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~-------------------------~------~ 168 (422)
T KOG0264|consen 120 KINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGE-------------------------C------R 168 (422)
T ss_pred eccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCccccccc-------------------------C------C
Confidence 345889999999999877 6667788899999998742111110000 0 0
Q ss_pred ceeEEeeecchhhHHHHhhhccccccCCcccccccccccCCCCCCCCceEEEEEeeccee-EeeeecccC-----CCCCc
Q 000722 86 SVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRG-----RDIPK 159 (1331)
Q Consensus 86 ~V~sVaf~DgtIrvWdl~tg~~l~~~~~~~~~~~~~~V~svafspdg~~lLasgs~d~iI-vwDl~t~~~-----~~i~~ 159 (1331)
+ ...+.+|.. .-.+++|++.....++++++|+.+ +||++.... .....
T Consensus 169 P-------------------------dl~L~gH~~-eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~ 222 (422)
T KOG0264|consen 169 P-------------------------DLRLKGHEK-EGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTI 222 (422)
T ss_pred C-------------------------ceEEEeecc-cccccccccccceeEeeccCCCcEEEEeccccccCCccccceEE
Confidence 0 011223322 234588888877788999988877 899875432 12345
Q ss_pred cccccccceeeehhhcccCCCcceEeecCCCceeeeeehhh--heeehhhcCCCccchhhhhHhhhccccEEEeecCCCc
Q 000722 160 QELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMIS--WKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDG 237 (1331)
Q Consensus 160 ~~~h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t--~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~Dg 237 (1331)
+.+|.+.|..++|||. +..+++++++|+.+.|||.++ .++.+... +|...|+|++| .+-++.+|+|||.|+
T Consensus 223 ~~~h~~~VeDV~~h~~----h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~-ah~~~vn~~~f--np~~~~ilAT~S~D~ 295 (422)
T KOG0264|consen 223 FSGHEDVVEDVAWHPL----HEDLFGSVGDDGKLMIWDTRSNTSKPSHSVK-AHSAEVNCVAF--NPFNEFILATGSADK 295 (422)
T ss_pred eecCCcceehhhcccc----chhhheeecCCCeEEEEEcCCCCCCCccccc-ccCCceeEEEe--CCCCCceEEeccCCC
Confidence 6789999999999863 567899999999999999995 44444554 99999999982 555678999999999
Q ss_pred eEEEEeccCCCccccccccceeeeccCcEEEEEechhccCCCcEEEeecCceeEeeeccchhhhccc-----CC---CCc
Q 000722 238 LLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRI-----KP---VPK 309 (1331)
Q Consensus 238 tIrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~-----~~---~~~ 309 (1331)
+|.+||+++-.. +..++.+|+..|..|.|+| .....|++++.|+.+.|||+..-...+.. .+ ...
T Consensus 296 tV~LwDlRnL~~-----~lh~~e~H~dev~~V~WSP--h~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~ 368 (422)
T KOG0264|consen 296 TVALWDLRNLNK-----PLHTFEGHEDEVFQVEWSP--HNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFI 368 (422)
T ss_pred cEEEeechhccc-----CceeccCCCcceEEEEeCC--CCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEE
Confidence 999999998652 5677899999999999999 47789999999999999999753322210 11 112
Q ss_pred ccccccccccCCCCCCCcee--eeeecce--eeeeec
Q 000722 310 LACHSVASWCHPRAPNLDIL--TCVKDSH--IWAIEH 342 (1331)
Q Consensus 310 l~~H~~~V~svafspdg~lL--a~s~Dg~--IWdl~~ 342 (1331)
-.||...|..+.|+|+...+ +.++|+. ||....
T Consensus 369 HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 369 HGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred ecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 46899999999999998744 5667874 898874
No 107
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.78 E-value=1.1e-18 Score=188.94 Aligned_cols=209 Identities=22% Similarity=0.372 Sum_probs=177.7
Q ss_pred CCCccccccccceeeehhhcccCCCcceEeecCCCceeeeeehhhheeehhhcCCCccchhhhhHhhhccccEEEeecCC
Q 000722 156 DIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGS 235 (1331)
Q Consensus 156 ~i~~~~~h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~ 235 (1331)
.+..+.+|.+.|..++. ....+.+.+++.|.+-+||.+++++|+..+. ||.+.|+|++ |++.+.++++++.
T Consensus 140 lvre~~GHkDGiW~Vaa-----~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~-GH~GSVNsik---fh~s~~L~lTaSG 210 (481)
T KOG0300|consen 140 LVRELEGHKDGIWHVAA-----DSTQPICGTASADHTARIWSLESGACLATYT-GHTGSVNSIK---FHNSGLLLLTASG 210 (481)
T ss_pred ehhhhcccccceeeehh-----hcCCcceeecccccceeEEeeccccceeeec-ccccceeeEE---eccccceEEEccC
Confidence 34457899999999998 4566789999999999999999999999998 9999999998 8999999999999
Q ss_pred CceEEEEecc------C------------------------------CCccccccccceeeeccCcEEEEEechhccCCC
Q 000722 236 DGLLILWSAD------H------------------------------GQDSRELVPKLSLKAHDGGVVAVELSRVMGGSP 279 (1331)
Q Consensus 236 DgtIrVWDl~------t------------------------------g~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~ 279 (1331)
|++-+||... . +..++ .|...+.+|...|.+..|-. +++
T Consensus 211 D~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiR--vPl~~ltgH~~vV~a~dWL~---gg~ 285 (481)
T KOG0300|consen 211 DETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIR--VPLMRLTGHRAVVSACDWLA---GGQ 285 (481)
T ss_pred CcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceee--eeeeeeeccccceEehhhhc---Ccc
Confidence 9999999621 0 00011 35667899999999999997 899
Q ss_pred cEEEeecCceeEeeeccchhhhcccCCCCcccccccccccCCCCCCCcee-eeeecce--eeeeecCccccccccccccc
Q 000722 280 QLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDIL-TCVKDSH--IWAIEHPTYSALTRPLCELS 356 (1331)
Q Consensus 280 ~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg~lL-a~s~Dg~--IWdl~~~~~~~l~~~~~~~~ 356 (1331)
.+++++.|++-.+||+.++..++. +.||....+.++-+|..+++ +.+.|.+ +||++..
T Consensus 286 Q~vTaSWDRTAnlwDVEtge~v~~------LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFRea------------- 346 (481)
T KOG0300|consen 286 QMVTASWDRTANLWDVETGEVVNI------LTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREA------------- 346 (481)
T ss_pred eeeeeeccccceeeeeccCceecc------ccCcchhccccccCCcceEEEEeccCceeEeccchhh-------------
Confidence 999999999999999999998776 79999999999999999866 6777775 8999842
Q ss_pred cCCCccccccccceEEEEEEeccCCccEeeecceeEEEEeecCCCC
Q 000722 357 SLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPRS 402 (1331)
Q Consensus 357 ~~~~~~~l~~h~~~~I~~la~sp~~~~lLAtGs~DG~Il~VWDlr~ 402 (1331)
...+..|.+|.+ .|+++.|.. +.+ +++|++|.+| +|||++.
T Consensus 347 -I~sV~VFQGHtd-tVTS~vF~~-dd~-vVSgSDDrTv-KvWdLrN 387 (481)
T KOG0300|consen 347 -IQSVAVFQGHTD-TVTSVVFNT-DDR-VVSGSDDRTV-KVWDLRN 387 (481)
T ss_pred -cceeeeeccccc-ceeEEEEec-CCc-eeecCCCceE-EEeeecc
Confidence 133567899999 999999998 344 9999999998 9999974
No 108
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.78 E-value=3.2e-18 Score=205.20 Aligned_cols=402 Identities=17% Similarity=0.193 Sum_probs=284.9
Q ss_pred ccCCCcEEEEEeecC--CceeEeecCCCceeeeccccceEEeeeccCCcccchhhh--hhhhhhcccccccCCCCccccc
Q 000722 8 RPTNDKIVKIQLHPT--HPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVG--AKLEKLAEGELEHKGKPTEAMR 83 (1331)
Q Consensus 8 ~gHs~~V~~lafSPd--g~~LaSgs~DGtV~VWD~~tg~~i~s~~~~~~~~i~~vs--pdg~~Lasgs~d~~g~~l~~l~ 83 (1331)
+...+.|+++ +||. -+-++.|+.+|.++|||+++++.+++|+... +.|.++. |....++.|
T Consensus 156 ~~~~~~Ital-~HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~-s~IT~ieqsPaLDVVaiG------------- 220 (910)
T KOG1539|consen 156 KVEGDFITAL-LHPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFF-SRITAIEQSPALDVVAIG------------- 220 (910)
T ss_pred eccCCceeeE-ecchhheeeEEEeecCCcEEEEEeccCcEEEEecccc-cceeEeccCCcceEEEEe-------------
Confidence 3333447776 6775 3578889999999999999999999999543 5555543 334333333
Q ss_pred CCceeEEeeecchhhHHHHhhhccccccCCcccccccccccCCCCCCCCceEEEEEeeccee-EeeeecccCCCCCcccc
Q 000722 84 GGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQEL 162 (1331)
Q Consensus 84 gg~V~sVaf~DgtIrvWdl~tg~~l~~~~~~~~~~~~~~V~svafspdg~~lLasgs~d~iI-vwDl~t~~~~~i~~~~~ 162 (1331)
..+|+|.++++..++.+. ...+..+.|++++|..||+.++++|+..+.+ +||++..+... .....
T Consensus 221 --------~~~G~ViifNlK~dkil~-----sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~-v~~na 286 (910)
T KOG1539|consen 221 --------LENGTVIIFNLKFDKILM-----SFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLIN-VTRNA 286 (910)
T ss_pred --------ccCceEEEEEcccCcEEE-----EEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeee-eeecc
Confidence 378999999988876542 2222247899999999999999999997754 99998754322 24457
Q ss_pred ccccceeeehhhcccCCCcceEeecCCCceeeeeehhhh----eeehhhcCCCccchhhhhHhhhccccEEEeecCCCce
Q 000722 163 DNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISW----KLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGL 238 (1331)
Q Consensus 163 h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~----~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~Dgt 238 (1331)
|.+.|....|. +..+.+++.+.|..+++|=..++ +.++ +..||..+..|+.+ +-..|..+.+++.|++
T Consensus 287 h~~sv~~~~fl-----~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR-~R~GHs~Pp~~irf--y~~~g~~ilsa~~Drt 358 (910)
T KOG1539|consen 287 HYGSVTGATFL-----PGEPVLVTAGADNSLKVWVFDSGDGVPRLLR-SRGGHSAPPSCIRF--YGSQGHFILSAKQDRT 358 (910)
T ss_pred ccCCcccceec-----CCCceEeeccCCCceeEEEeeCCCCcchhee-eccCCCCCchheee--eccCcEEEEecccCcc
Confidence 88899999995 56889999999999998866543 2333 34599999999982 5578899999999998
Q ss_pred EEEEeccCC-------C--------cc---------------------------------------cccc-c-----cce
Q 000722 239 LILWSADHG-------Q--------DS---------------------------------------RELV-P-----KLS 258 (1331)
Q Consensus 239 IrVWDl~tg-------~--------~~---------------------------------------~~~~-~-----~~~ 258 (1331)
.+.+++... + .. .+|. . .++
T Consensus 359 ~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~ 438 (910)
T KOG1539|consen 359 LRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHV 438 (910)
T ss_pred hhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEE
Confidence 888765321 0 00 0000 0 000
Q ss_pred ee-----eccCcEEEEEechhccCCCcEEEeecCceeEeeeccchhhhcccCCCCcccccccccccCCCCCCCc-eeeee
Q 000722 259 LK-----AHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLD-ILTCV 332 (1331)
Q Consensus 259 l~-----gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg~-lLa~s 332 (1331)
+. .-...+++++.++ .|++.+.|...|.|-+|++++|-...++. .-..|...|+.++...-++ +++++
T Consensus 439 L~~~~~~~~~~~~~av~vs~---CGNF~~IG~S~G~Id~fNmQSGi~r~sf~---~~~ah~~~V~gla~D~~n~~~vsa~ 512 (910)
T KOG1539|consen 439 LDPKRFKKDDINATAVCVSF---CGNFVFIGYSKGTIDRFNMQSGIHRKSFG---DSPAHKGEVTGLAVDGTNRLLVSAG 512 (910)
T ss_pred ecCccccccCcceEEEEEec---cCceEEEeccCCeEEEEEcccCeeecccc---cCccccCceeEEEecCCCceEEEcc
Confidence 11 1124577888887 78999999999999999999998766642 2368999999999987777 55888
Q ss_pred ecce--eeeeecCccccccccccccccCCCccccccccceEEEEEEeccCCccEeeecceeEEEEeecCCCCCCCCCCCC
Q 000722 333 KDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPRSLPAVAPLP 410 (1331)
Q Consensus 333 ~Dg~--IWdl~~~~~~~l~~~~~~~~~~~~~~~l~~h~~~~I~~la~sp~~~~lLAtGs~DG~Il~VWDlr~~p~i~~~~ 410 (1331)
.+|. +||...... ...++-.. .+.++..|.. ..+++.+.+|-.| +++|...+..+..
T Consensus 513 ~~Gilkfw~f~~k~l---------------~~~l~l~~--~~~~iv~hr~-s~l~a~~~ddf~I-~vvD~~t~kvvR~-- 571 (910)
T KOG1539|consen 513 ADGILKFWDFKKKVL---------------KKSLRLGS--SITGIVYHRV-SDLLAIALDDFSI-RVVDVVTRKVVRE-- 571 (910)
T ss_pred CcceEEEEecCCcce---------------eeeeccCC--Ccceeeeeeh-hhhhhhhcCceeE-EEEEchhhhhhHH--
Confidence 8985 799986421 11222121 4777888874 5568888888777 6888643222111
Q ss_pred CCCCCCCcceEEEeeeeeeeeeeecccCCCCCCCCCCCccccCCCCCCCCchhhHhhhccccccccCCCceeEEEEeeCC
Q 000722 411 TPSGSRDHSAVYIVERELKLVNFQLSSAANPSLGNNGSLSETGRLKGDLPDALQIKQIKKHISTPVPHDSYSILSVSSSG 490 (1331)
Q Consensus 411 t~s~~~~~s~~~~~~~~l~l~~fq~~~~~~~~lg~~~~ls~~G~~~~~~~e~l~v~~~~r~i~t~~~~e~~s~ls~SpdG 490 (1331)
|... . .....++|||||
T Consensus 572 ----------------------f~gh----------------------------------------~-nritd~~FS~Dg 588 (910)
T KOG1539|consen 572 ----------------------FWGH----------------------------------------G-NRITDMTFSPDG 588 (910)
T ss_pred ----------------------hhcc----------------------------------------c-cceeeeEeCCCC
Confidence 1000 0 112478999999
Q ss_pred cEEEEEcCCCceeeEEeecceeEee----cCcceeeehhcchhhHHHhhhc
Q 000722 491 KYLAVVWPDIPYFSVYKVSDWSIVD----SGSARLLAWDTCRDRFAILESA 537 (1331)
Q Consensus 491 rylaVv~~~~g~y~Iy~i~~~~~i~----~G~~~~~aWs~~~~~fAvl~~~ 537 (1331)
|+| +...-++.+.+|++.....++ ...++++.++|.++.+|..+..
T Consensus 589 rWl-isasmD~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~LAT~Hvd 638 (910)
T KOG1539|consen 589 RWL-ISASMDSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLATVHVD 638 (910)
T ss_pred cEE-EEeecCCcEEEEeccCcceeeeEecCCcceeeEECCCCCEEEEEEec
Confidence 999 666788999999999988877 4558999999999999998754
No 109
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.78 E-value=2.2e-16 Score=181.03 Aligned_cols=204 Identities=20% Similarity=0.227 Sum_probs=140.6
Q ss_pred EEEEEeecc-eeEeeeecccCCCCCccccccccceeeehhhcccCCCcceEeecCCCceeeeeehhhheeehhhcCCCcc
Q 000722 135 FLVICCVNK-AIFLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKG 213 (1331)
Q Consensus 135 lLasgs~d~-iIvwDl~t~~~~~i~~~~~h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~~~v~~~~~gH~~ 213 (1331)
.|+.++.|+ .++++-. ++. -.....|.+.+.|-.| +++|.-|++.+.||.|++|.- +|-+..++. ....
T Consensus 77 ~~~i~s~DGkf~il~k~-~rV--E~sv~AH~~A~~~gRW-----~~dGtgLlt~GEDG~iKiWSr-sGMLRStl~-Q~~~ 146 (737)
T KOG1524|consen 77 TLLICSNDGRFVILNKS-ARV--ERSISAHAAAISSGRW-----SPDGAGLLTAGEDGVIKIWSR-SGMLRSTVV-QNEE 146 (737)
T ss_pred eEEEEcCCceEEEeccc-chh--hhhhhhhhhhhhhccc-----CCCCceeeeecCCceEEEEec-cchHHHHHh-hcCc
Confidence 444445454 4455422 222 2346889999999999 789999999999999999984 344444443 5778
Q ss_pred chhhhhHhhhccccEEEeecCCCceEEEEeccCCCccccccccceeeeccCcEEEEEechhccCCCcEEEeecCceeEee
Q 000722 214 SISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIW 293 (1331)
Q Consensus 214 ~V~~vawf~~spdg~lLaSgs~DgtIrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIW 293 (1331)
+|.|++| -+...+.+.+.+..-.|+ -+.... .....+.|++-|.++.|++ ..+++++||.|-..+||
T Consensus 147 ~v~c~~W--~p~S~~vl~c~g~h~~IK--pL~~n~------k~i~WkAHDGiiL~~~W~~---~s~lI~sgGED~kfKvW 213 (737)
T KOG1524|consen 147 SIRCARW--APNSNSIVFCQGGHISIK--PLAANS------KIIRWRAHDGLVLSLSWST---QSNIIASGGEDFRFKIW 213 (737)
T ss_pred eeEEEEE--CCCCCceEEecCCeEEEe--eccccc------ceeEEeccCcEEEEeecCc---cccceeecCCceeEEee
Confidence 9999997 233344555444333333 332221 1234689999999999999 78899999999999999
Q ss_pred eccchhhhcccCCCCcccccccccccCCCCCCCceeeeeecceeeeeecCccccccccccccccCCCccccccccceEEE
Q 000722 294 DTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDILTCVKDSHIWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVY 373 (1331)
Q Consensus 294 Dl~t~~~l~~~~~~~~l~~H~~~V~svafspdg~lLa~s~Dg~IWdl~~~~~~~l~~~~~~~~~~~~~~~l~~h~~~~I~ 373 (1331)
|.... .+.. -..|..+|++++|.|+..++.++ .++. .|...+...|.
T Consensus 214 D~~G~-~Lf~------S~~~ey~ITSva~npd~~~~v~S-------~nt~-------------------R~~~p~~GSif 260 (737)
T KOG1524|consen 214 DAQGA-NLFT------SAAEEYAITSVAFNPEKDYLLWS-------YNTA-------------------RFSSPRVGSIF 260 (737)
T ss_pred cccCc-cccc------CChhccceeeeeeccccceeeee-------eeee-------------------eecCCCccceE
Confidence 97643 3322 36788999999999995455443 3321 11222223799
Q ss_pred EEEeccCCccEeeecceeEEEE
Q 000722 374 CMVAHSLQPHLVATGTNVGVII 395 (1331)
Q Consensus 374 ~la~sp~~~~lLAtGs~DG~Il 395 (1331)
.++||+ +|..+++|+..|.++
T Consensus 261 nlsWS~-DGTQ~a~gt~~G~v~ 281 (737)
T KOG1524|consen 261 NLSWSA-DGTQATCGTSTGQLI 281 (737)
T ss_pred EEEEcC-CCceeeccccCceEE
Confidence 999999 688899999999974
No 110
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.78 E-value=1.6e-18 Score=196.93 Aligned_cols=254 Identities=17% Similarity=0.257 Sum_probs=193.8
Q ss_pred ccccccccCCCCCCCCceEEEEEeeccee-EeeeecccCC--CC-------------Ccc-ccccccceeeehhhcccCC
Q 000722 117 SNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGR--DI-------------PKQ-ELDNKSLVCMEFLSRSAVG 179 (1331)
Q Consensus 117 ~~~~~~V~svafspdg~~lLasgs~d~iI-vwDl~t~~~~--~i-------------~~~-~~h~~~V~~Vaf~P~s~Sp 179 (1331)
+.|.-.+.+++++|+++ +..+++.++.+ .|+..+++.. .+ ... ..|.+.+.|++. ++
T Consensus 139 ~~H~~s~~~vals~d~~-~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~av-----S~ 212 (479)
T KOG0299|consen 139 GKHQLSVTSVALSPDDK-RVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAV-----SS 212 (479)
T ss_pred ccccCcceEEEeecccc-ceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEE-----cC
Confidence 33466788999999998 66777777666 8988776522 01 111 367889999999 88
Q ss_pred CcceEeecCCCceeeeeehhhheeehhhcCCCccchhhhhHhhhccccEEEeecCCCceEEEEeccCCCcccccccccee
Q 000722 180 DVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSL 259 (1331)
Q Consensus 180 dg~~LasGs~DGtIrlWDl~t~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrVWDl~tg~~~~~~~~~~~l 259 (1331)
||+||++|+.|..|.||+.++.+.++.+. +|.+.|.+++ |-...+.+.+++.|++|++|++.....+. ++
T Consensus 213 Dgkylatgg~d~~v~Iw~~~t~ehv~~~~-ghr~~V~~L~---fr~gt~~lys~s~Drsvkvw~~~~~s~ve------tl 282 (479)
T KOG0299|consen 213 DGKYLATGGRDRHVQIWDCDTLEHVKVFK-GHRGAVSSLA---FRKGTSELYSASADRSVKVWSIDQLSYVE------TL 282 (479)
T ss_pred CCcEEEecCCCceEEEecCcccchhhccc-ccccceeeee---eecCccceeeeecCCceEEEehhHhHHHH------HH
Confidence 99999999999999999999999999987 9999999998 67777889999999999999998765443 47
Q ss_pred eeccCcEEEEEechhccCCCcEEEeecCceeEeeeccchhhhcccCCCCcccccccccccCCCCCCCceeeeeecce--e
Q 000722 260 KAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDILTCVKDSH--I 337 (1331)
Q Consensus 260 ~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg~lLa~s~Dg~--I 337 (1331)
.||.+.|.++.... -++.+.+|+.|+++++|++.....+ .+.+|.+.+-|++|-.+..+++||.+|. +
T Consensus 283 yGHqd~v~~IdaL~---reR~vtVGgrDrT~rlwKi~eesql-------ifrg~~~sidcv~~In~~HfvsGSdnG~IaL 352 (479)
T KOG0299|consen 283 YGHQDGVLGIDALS---RERCVTVGGRDRTVRLWKIPEESQL-------IFRGGEGSIDCVAFINDEHFVSGSDNGSIAL 352 (479)
T ss_pred hCCccceeeechhc---ccceEEeccccceeEEEecccccee-------eeeCCCCCeeeEEEecccceeeccCCceEEE
Confidence 89999999998875 5666667779999999999543322 1578888899999999999999999997 7
Q ss_pred eeeecCccccccccccccccCCCccccccccceEEEEEEeccCCccEeeecceeEEEEeecCCCC
Q 000722 338 WAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPRS 402 (1331)
Q Consensus 338 Wdl~~~~~~~l~~~~~~~~~~~~~~~l~~h~~~~I~~la~sp~~~~lLAtGs~DG~Il~VWDlr~ 402 (1331)
|++.+.... ...+.. + +..+...-..+. ..|++++..| +..++|+|+.+|.| |+|.+.+
T Consensus 353 Ws~~KKkpl-f~~~~A-H-gv~~~~~~~~~~-~Witsla~i~-~sdL~asGS~~G~v-rLW~i~~ 411 (479)
T KOG0299|consen 353 WSLLKKKPL-FTSRLA-H-GVIPELDPVNGN-FWITSLAVIP-GSDLLASGSWSGCV-RLWKIED 411 (479)
T ss_pred eeecccCce-eEeecc-c-cccCCccccccc-cceeeeEecc-cCceEEecCCCCce-EEEEecC
Confidence 988753210 111100 0 000100001112 3899999999 78899999999998 9998753
No 111
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.77 E-value=1.9e-18 Score=182.52 Aligned_cols=254 Identities=15% Similarity=0.182 Sum_probs=189.8
Q ss_pred ccccccCCCCCCCCceEEEEEeeccee-EeeeecccC-CCCCccccccccceeeehhhcccCCCcceEeecCCCceeeee
Q 000722 119 VTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRG-RDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVL 196 (1331)
Q Consensus 119 ~~~~V~svafspdg~~lLasgs~d~iI-vwDl~t~~~-~~i~~~~~h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlW 196 (1331)
|.+.|.++...--|+ .|++|+.|+.+ ++....... ..+..+.+|.++|..++|-. -.-|.+|++++.||.|.||
T Consensus 10 H~D~IHda~lDyygk-rlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wah---Pk~G~iLAScsYDgkVIiW 85 (299)
T KOG1332|consen 10 HEDMIHDAQLDYYGK-RLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAH---PKFGTILASCSYDGKVIIW 85 (299)
T ss_pred hhhhhhHhhhhhhcc-eeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecc---cccCcEeeEeecCceEEEE
Confidence 356666666666787 88999999988 567665433 56677899999999999942 1268999999999999999
Q ss_pred ehhhheeeh--hhcCCCccchhhhhHhhhccccEEEeecCCCceEEEEeccCCCccccccccceeeeccCcEEEEEechh
Q 000722 197 SMISWKLVR--RYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRV 274 (1331)
Q Consensus 197 Dl~t~~~v~--~~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~ 274 (1331)
.-.+++-.+ ... .|...|++++| ..+..|-+|++++.||.|.|.+.++... +........|.-+|++++|.|.
T Consensus 86 ke~~g~w~k~~e~~-~h~~SVNsV~w-apheygl~LacasSDG~vsvl~~~~~g~---w~t~ki~~aH~~GvnsVswapa 160 (299)
T KOG1332|consen 86 KEENGRWTKAYEHA-AHSASVNSVAW-APHEYGLLLACASSDGKVSVLTYDSSGG---WTTSKIVFAHEIGVNSVSWAPA 160 (299)
T ss_pred ecCCCchhhhhhhh-hhcccceeecc-cccccceEEEEeeCCCcEEEEEEcCCCC---ccchhhhhccccccceeeecCc
Confidence 988764433 334 79999999996 3677788999999999999999876511 2223346789999999999993
Q ss_pred ccCC-----------CcEEEeecCceeEeeeccchhhhcccCCCCcccccccccccCCCCCCC-----ceeeeeecce--
Q 000722 275 MGGS-----------PQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNL-----DILTCVKDSH-- 336 (1331)
Q Consensus 275 ~~dg-----------~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg-----~lLa~s~Dg~-- 336 (1331)
.-.+ ..|++|+.|..|+||+..+++-. ...++.+|.+.|+.++|.|.. .+.+|+.|++
T Consensus 161 ~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~----~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~vi 236 (299)
T KOG1332|consen 161 SAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWK----LERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVI 236 (299)
T ss_pred CCCccccccCcccccceeeccCCccceeeeecCCcchh----hhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEE
Confidence 2112 56999999999999999886322 223489999999999999973 2558999998
Q ss_pred eeeeecCccccccccccccccCCCccccccccceEEEEEEeccCCccEeeecceeEEEEeecCC
Q 000722 337 IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDP 400 (1331)
Q Consensus 337 IWdl~~~~~~~l~~~~~~~~~~~~~~~l~~h~~~~I~~la~sp~~~~lLAtGs~DG~Il~VWDl 400 (1331)
||..+. .+..-. ...+..-.+ .+|.+.||. .+++|+.++.|+.| .+|.-
T Consensus 237 Iwt~~~-e~e~wk-----------~tll~~f~~-~~w~vSWS~-sGn~LaVs~GdNkv-tlwke 285 (299)
T KOG1332|consen 237 IWTKDE-EYEPWK-----------KTLLEEFPD-VVWRVSWSL-SGNILAVSGGDNKV-TLWKE 285 (299)
T ss_pred EEEecC-ccCccc-----------ccccccCCc-ceEEEEEec-cccEEEEecCCcEE-EEEEe
Confidence 676652 111110 111222334 799999999 58889888888887 79964
No 112
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=1.3e-18 Score=206.28 Aligned_cols=239 Identities=17% Similarity=0.267 Sum_probs=190.5
Q ss_pred CCcEEEEEeecCCceeEeecCCCceeeeccccceEEeeeccCCcccchhhhhhhhhhcccccccCCCCcccccCCceeEE
Q 000722 11 NDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRGGSVKQV 90 (1331)
Q Consensus 11 s~~V~~lafSPdg~~LaSgs~DGtV~VWD~~tg~~i~s~~~~~~~~i~~vspdg~~Lasgs~d~~g~~l~~l~gg~V~sV 90 (1331)
.+.|+++.|+++|.+|+.|..+|.|.|||..+.+.+..+..+|
T Consensus 217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h------------------------------------- 259 (484)
T KOG0305|consen 217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSH------------------------------------- 259 (484)
T ss_pred CCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCc-------------------------------------
Confidence 7899999999999999999999999999998877776666422
Q ss_pred eeecchhhHHHHhhhccccccCCcccccccccccCCCCCCCCceEEEEEeeccee-EeeeecccCCCCCcccccccccee
Q 000722 91 NFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQELDNKSLVC 169 (1331)
Q Consensus 91 af~DgtIrvWdl~tg~~l~~~~~~~~~~~~~~V~svafspdg~~lLasgs~d~iI-vwDl~t~~~~~i~~~~~h~~~V~~ 169 (1331)
...|.+++|. +. .+.+|+.++.+ .+|++..+.. ...+.+|...|..
T Consensus 260 -----------------------------~~rvg~laW~--~~-~lssGsr~~~I~~~dvR~~~~~-~~~~~~H~qeVCg 306 (484)
T KOG0305|consen 260 -----------------------------ASRVGSLAWN--SS-VLSSGSRDGKILNHDVRISQHV-VSTLQGHRQEVCG 306 (484)
T ss_pred -----------------------------CceeEEEecc--Cc-eEEEecCCCcEEEEEEecchhh-hhhhhcccceeee
Confidence 3334556665 33 78888888877 6698875532 2257889999999
Q ss_pred eehhhcccCCCcceEeecCCCceeeeeehhhheeehhhcCCCccchhhhhHhhhccccEEEeecC--CCceEEEEeccCC
Q 000722 170 MEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGG--SDGLLILWSADHG 247 (1331)
Q Consensus 170 Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs--~DgtIrVWDl~tg 247 (1331)
+.| ++|+.++++|+.|+.+.|||.........+. .|...|..++|+ +-...+||+|+ .|++|++||..++
T Consensus 307 Lkw-----s~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~-~H~aAVKA~awc--P~q~~lLAsGGGs~D~~i~fwn~~~g 378 (484)
T KOG0305|consen 307 LKW-----SPDGNQLASGGNDNVVFIWDGLSPEPKFTFT-EHTAAVKALAWC--PWQSGLLATGGGSADRCIKFWNTNTG 378 (484)
T ss_pred eEE-----CCCCCeeccCCCccceEeccCCCccccEEEe-ccceeeeEeeeC--CCccCceEEcCCCcccEEEEEEcCCC
Confidence 999 7899999999999999999997777777877 999999999985 44455888865 7999999999999
Q ss_pred CccccccccceeeeccCcEEEEEechhccCCCcEEEee-cCceeEeeeccchhhhcccCCCCcccccccccccCCCCCCC
Q 000722 248 QDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIG-ADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNL 326 (1331)
Q Consensus 248 ~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs-~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg 326 (1331)
..+.. ......|+++.|++ ...+++.+-| .++.|.||++.+.+.+.. +.+|...|..++++|||
T Consensus 379 ~~i~~-------vdtgsQVcsL~Wsk--~~kEi~sthG~s~n~i~lw~~ps~~~~~~------l~gH~~RVl~la~SPdg 443 (484)
T KOG0305|consen 379 ARIDS-------VDTGSQVCSLIWSK--KYKELLSTHGYSENQITLWKYPSMKLVAE------LLGHTSRVLYLALSPDG 443 (484)
T ss_pred cEecc-------cccCCceeeEEEcC--CCCEEEEecCCCCCcEEEEeccccceeee------ecCCcceeEEEEECCCC
Confidence 87664 23456799999999 2334444433 578999999988655444 89999999999999999
Q ss_pred cee-eeeecce--eeeeec
Q 000722 327 DIL-TCVKDSH--IWAIEH 342 (1331)
Q Consensus 327 ~lL-a~s~Dg~--IWdl~~ 342 (1331)
..+ +++.|.+ +|++-.
T Consensus 444 ~~i~t~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 444 ETIVTGAADETLRFWNLFD 462 (484)
T ss_pred CEEEEecccCcEEeccccC
Confidence 855 7778875 787754
No 113
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.77 E-value=1.1e-18 Score=185.91 Aligned_cols=234 Identities=16% Similarity=0.229 Sum_probs=185.1
Q ss_pred ccccCCCcEEEEEeecCCc-eeEeecCCCceeeeccccceEEeeeccCCcccchhhhhhhhhhcccccccCCCCcccccC
Q 000722 6 AFRPTNDKIVKIQLHPTHP-WLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRG 84 (1331)
Q Consensus 6 ~L~gHs~~V~~lafSPdg~-~LaSgs~DGtV~VWD~~tg~~i~s~~~~~~~~i~~vspdg~~Lasgs~d~~g~~l~~l~g 84 (1331)
.++||++.|-.++|+|..+ .+++++.|.+|++||.+.++++..+....-+....-.|++++++.+..
T Consensus 59 ~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~k------------ 126 (313)
T KOG1407|consen 59 VYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGENINITWSPDGEYIAVGNK------------ 126 (313)
T ss_pred cccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCcceEEEEcCCCCEEEEecC------------
Confidence 5689999999999999765 999999999999999999999999885543443344488888877753
Q ss_pred CceeEEeeecchhhHHHHhhhccccccCCcccccccccccCCCCCCCCceEEEEEeecceeEeeeecccCCCCCcccccc
Q 000722 85 GSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFLDLVTMRGRDIPKQELDN 164 (1331)
Q Consensus 85 g~V~sVaf~DgtIrvWdl~tg~~l~~~~~~~~~~~~~~V~svafspdg~~lLasgs~d~iIvwDl~t~~~~~i~~~~~h~ 164 (1331)
|..|.+.|..+.+... .......+.-++|+.++..++++.+.+.+-++.+-. .+.+..+..|.
T Consensus 127 ---------dD~it~id~r~~~~~~------~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsyps--Lkpv~si~AH~ 189 (313)
T KOG1407|consen 127 ---------DDRITFIDARTYKIVN------EEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPS--LKPVQSIKAHP 189 (313)
T ss_pred ---------cccEEEEEecccceee------hhcccceeeeeeecCCCCEEEEecCCceEEEEeccc--cccccccccCC
Confidence 3334444433333221 111133455677887777666666666665776664 45677889999
Q ss_pred ccceeeehhhcccCCCcceEeecCCCceeeeeehhhheeehhhcCCCccchhhhhHhhhccccEEEeecCCCceEEEEec
Q 000722 165 KSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSA 244 (1331)
Q Consensus 165 ~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrVWDl 244 (1331)
....||.| +|+|+++++|+.|..+.+||++..-|++.+. .+.-+|..+. |+-+|++|++||.|..|-|=++
T Consensus 190 snCicI~f-----~p~GryfA~GsADAlvSLWD~~ELiC~R~is-RldwpVRTlS---FS~dg~~lASaSEDh~IDIA~v 260 (313)
T KOG1407|consen 190 SNCICIEF-----DPDGRYFATGSADALVSLWDVDELICERCIS-RLDWPVRTLS---FSHDGRMLASASEDHFIDIAEV 260 (313)
T ss_pred cceEEEEE-----CCCCceEeeccccceeeccChhHhhhheeec-cccCceEEEE---eccCcceeeccCccceEEeEec
Confidence 99999999 8899999999999999999999998998887 8999999998 8999999999999999999999
Q ss_pred cCCCccccccccceeeeccCcEEEEEechhccCCCcEEEeecC
Q 000722 245 DHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGAD 287 (1331)
Q Consensus 245 ~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~D 287 (1331)
.+|..+++ -.|+++.+.|+||| ...+|+-+++|
T Consensus 261 etGd~~~e-------I~~~~~t~tVAWHP---k~~LLAyA~dd 293 (313)
T KOG1407|consen 261 ETGDRVWE-------IPCEGPTFTVAWHP---KRPLLAYACDD 293 (313)
T ss_pred ccCCeEEE-------eeccCCceeEEecC---CCceeeEEecC
Confidence 99997766 34788899999999 78888877765
No 114
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.76 E-value=1.1e-18 Score=207.90 Aligned_cols=237 Identities=21% Similarity=0.288 Sum_probs=189.3
Q ss_pred cccCCCCCCCCceEEEEEeeccee-Eeeeec-ccCCCCCccccccccceeeehhhcccCCCcceEeecCCCceeeeeehh
Q 000722 122 GFASPPPSTKGRHFLVICCVNKAI-FLDLVT-MRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMI 199 (1331)
Q Consensus 122 ~V~svafspdg~~lLasgs~d~iI-vwDl~t-~~~~~i~~~~~h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~ 199 (1331)
.+..+.|+.-..++|++|+.++.+ +||+.. .+...+..+..|...++++.||+ ....+|++||.||+|++||++
T Consensus 89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~----tep~iliSGSQDg~vK~~DlR 164 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHS----TEPNILISGSQDGTVKCWDLR 164 (839)
T ss_pred ehhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeecc----CCccEEEecCCCceEEEEeee
Confidence 345677876666799999999988 899875 22334556788999999999984 467899999999999999999
Q ss_pred hheeehhhcCCCccchhhhhHhhhccccEEEeecCCCceEEEEeccCCCccccccccceeeeccCcEEEEEechhccCCC
Q 000722 200 SWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSP 279 (1331)
Q Consensus 200 t~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~ 279 (1331)
..+-..++. +....|..|+| ....++.|+++...|.+++||++..+. ..+.+.+|.++|.|+.||| ++.
T Consensus 165 ~~~S~~t~~-~nSESiRDV~f--sp~~~~~F~s~~dsG~lqlWDlRqp~r-----~~~k~~AH~GpV~c~nwhP---nr~ 233 (839)
T KOG0269|consen 165 SKKSKSTFR-SNSESIRDVKF--SPGYGNKFASIHDSGYLQLWDLRQPDR-----CEKKLTAHNGPVLCLNWHP---NRE 233 (839)
T ss_pred ccccccccc-ccchhhhceee--ccCCCceEEEecCCceEEEeeccCchh-----HHHHhhcccCceEEEeecC---CCc
Confidence 988888887 78889999984 344578999999999999999997653 2344789999999999999 899
Q ss_pred cEEEeecCceeEeeeccchhhhcccCCCCcccccc-cccccCCCCCCCc-ee-eeee--cc--eeeeeecCccccccccc
Q 000722 280 QLITIGADKTLAIWDTVSFKELRRIKPVPKLACHS-VASWCHPRAPNLD-IL-TCVK--DS--HIWAIEHPTYSALTRPL 352 (1331)
Q Consensus 280 ~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~-~~V~svafspdg~-lL-a~s~--Dg--~IWdl~~~~~~~l~~~~ 352 (1331)
+|+|||.|+.|+|||+.+.+.-.. ..-++ .+|.++.|-|... .| +|+. |- +|||++.+
T Consensus 234 ~lATGGRDK~vkiWd~t~~~~~~~------~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRP--------- 298 (839)
T KOG0269|consen 234 WLATGGRDKMVKIWDMTDSRAKPK------HTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRP--------- 298 (839)
T ss_pred eeeecCCCccEEEEeccCCCccce------eEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccc---------
Confidence 999999999999999987553211 22222 4677999999876 33 4442 22 49999864
Q ss_pred cccccCCCccccccccceEEEEEEeccCCccEeeecceeEEE
Q 000722 353 CELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVI 394 (1331)
Q Consensus 353 ~~~~~~~~~~~l~~h~~~~I~~la~sp~~~~lLAtGs~DG~I 394 (1331)
..|..++..|.+ .++.++|...+...+.+++.||+|
T Consensus 299 -----YIP~~t~~eH~~-~vt~i~W~~~d~~~l~s~sKD~tv 334 (839)
T KOG0269|consen 299 -----YIPYATFLEHTD-SVTGIAWDSGDRINLWSCSKDGTV 334 (839)
T ss_pred -----cccceeeeccCc-cccceeccCCCceeeEeecCccHH
Confidence 356778888988 899999998777889999999987
No 115
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.76 E-value=3.6e-18 Score=186.19 Aligned_cols=260 Identities=17% Similarity=0.217 Sum_probs=198.3
Q ss_pred CCCcEEEEEeecCCceeEeecCCCceeeeccccceEEeeeccCCcccchhhhhhhhhhcccccccCCCCcccccCCceeE
Q 000722 10 TNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRGGSVKQ 89 (1331)
Q Consensus 10 Hs~~V~~lafSPdg~~LaSgs~DGtV~VWD~~tg~~i~s~~~~~~~~i~~vspdg~~Lasgs~d~~g~~l~~l~gg~V~s 89 (1331)
-.+.|.++.|+|.+..|+.++.||++++||+........+.. ++++.+
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~--------------------------------~~plL~ 59 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKH--------------------------------GAPLLD 59 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhheec--------------------------------CCceee
Confidence 468899999999999999999999999999988766655552 234444
Q ss_pred Eee----------ecchhhHHHHhhhccccccCCcccccccccccCCCCCCCCceEEEEEeeccee-EeeeecccCCCCC
Q 000722 90 VNF----------YDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIP 158 (1331)
Q Consensus 90 Vaf----------~DgtIrvWdl~tg~~l~~~~~~~~~~~~~~V~svafspdg~~lLasgs~d~iI-vwDl~t~~~~~i~ 158 (1331)
++| .||.|+.+|+.++.. ...+.|...++++.+++... .+++|+.|+.+ +||.+... ...
T Consensus 60 c~F~d~~~~~~G~~dg~vr~~Dln~~~~------~~igth~~~i~ci~~~~~~~-~vIsgsWD~~ik~wD~R~~~--~~~ 130 (323)
T KOG1036|consen 60 CAFADESTIVTGGLDGQVRRYDLNTGNE------DQIGTHDEGIRCIEYSYEVG-CVISGSWDKTIKFWDPRNKV--VVG 130 (323)
T ss_pred eeccCCceEEEeccCceEEEEEecCCcc------eeeccCCCceEEEEeeccCC-eEEEcccCccEEEEeccccc--ccc
Confidence 444 589999999988754 34455588899999998665 88999999988 89988522 111
Q ss_pred ccccccccceeeehhhcccCCCcceEeecCCCceeeeeehhhheeeh-hhcCCCccchhhhhHhhhccccEEEeecCCCc
Q 000722 159 KQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVR-RYTGGHKGSISCLMTFMASSGEALLVSGGSDG 237 (1331)
Q Consensus 159 ~~~~h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~~~v~-~~~~gH~~~V~~vawf~~spdg~lLaSgs~Dg 237 (1331)
.....+.|.|+.. .++.|++|+.|..|.+||+++..... .....-+-.+.|++ +-|++.-++.+|-||
T Consensus 131 -~~d~~kkVy~~~v-------~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~---~~pn~eGy~~sSieG 199 (323)
T KOG1036|consen 131 -TFDQGKKVYCMDV-------SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVA---LVPNGEGYVVSSIEG 199 (323)
T ss_pred -ccccCceEEEEec-------cCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEE---EecCCCceEEEeecc
Confidence 1223458999988 68899999999999999999764433 22234566788887 455777788899999
Q ss_pred eEEEEeccCCCccccccccceeeecc---------CcEEEEEechhccCCCcEEEeecCceeEeeeccchhhhcccCCCC
Q 000722 238 LLILWSADHGQDSRELVPKLSLKAHD---------GGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVP 308 (1331)
Q Consensus 238 tIrVWDl~tg~~~~~~~~~~~l~gH~---------~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~ 308 (1331)
.|.+=.++.....+ ..++.++.|. .+|++++||| -...|+|||.||.|.+||+.+.+.+..
T Consensus 200 RVavE~~d~s~~~~--skkyaFkCHr~~~~~~~~~yPVNai~Fhp---~~~tfaTgGsDG~V~~Wd~~~rKrl~q----- 269 (323)
T KOG1036|consen 200 RVAVEYFDDSEEAQ--SKKYAFKCHRLSEKDTEIIYPVNAIAFHP---IHGTFATGGSDGIVNIWDLFNRKRLKQ----- 269 (323)
T ss_pred eEEEEccCCchHHh--hhceeEEeeecccCCceEEEEeceeEecc---ccceEEecCCCceEEEccCcchhhhhh-----
Confidence 99986666553332 2456677775 3699999999 567899999999999999998887766
Q ss_pred cccccccccccCCCCCCCceeeee
Q 000722 309 KLACHSVASWCHPRAPNLDILTCV 332 (1331)
Q Consensus 309 ~l~~H~~~V~svafspdg~lLa~s 332 (1331)
+......|.+++|+.+|..|+.+
T Consensus 270 -~~~~~~SI~slsfs~dG~~LAia 292 (323)
T KOG1036|consen 270 -LAKYETSISSLSFSMDGSLLAIA 292 (323)
T ss_pred -ccCCCCceEEEEeccCCCeEEEE
Confidence 34445678899999999988654
No 116
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=5.8e-18 Score=192.75 Aligned_cols=229 Identities=17% Similarity=0.235 Sum_probs=178.0
Q ss_pred ccccceeeehhhcccCCCcceEeecCCCceeeeeehhhheeehhhcCCCccchhhhhHhhhccccEEEeecCCCceEEEE
Q 000722 163 DNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILW 242 (1331)
Q Consensus 163 h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrVW 242 (1331)
-.+.|.|++- +|+|.+|+.|+-.|.|++|.+.+|.++..+. +|-..|+|+. |+.||.+|+|||.||.|.+|
T Consensus 80 ~Pg~v~al~s-----~n~G~~l~ag~i~g~lYlWelssG~LL~v~~-aHYQ~ITcL~---fs~dgs~iiTgskDg~V~vW 150 (476)
T KOG0646|consen 80 LPGPVHALAS-----SNLGYFLLAGTISGNLYLWELSSGILLNVLS-AHYQSITCLK---FSDDGSHIITGSKDGAVLVW 150 (476)
T ss_pred cccceeeeec-----CCCceEEEeecccCcEEEEEeccccHHHHHH-hhccceeEEE---EeCCCcEEEecCCCccEEEE
Confidence 3678999998 7899999999999999999999999999996 9999999998 89999999999999999999
Q ss_pred eccCC---CccccccccceeeeccCcEEEEEechhccCCCcEEEeecCceeEeeeccchhhhcccCCCCccccccccccc
Q 000722 243 SADHG---QDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWC 319 (1331)
Q Consensus 243 Dl~tg---~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~s 319 (1331)
++..- ...+...|.+.+..|.-.|+++...+. +...+|+|+|.|.++|+||+..+..+.++. -...+.+
T Consensus 151 ~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~G-g~~~rl~TaS~D~t~k~wdlS~g~LLlti~-------fp~si~a 222 (476)
T KOG0646|consen 151 LLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSG-GTNARLYTASEDRTIKLWDLSLGVLLLTIT-------FPSSIKA 222 (476)
T ss_pred EEEeecccccCCCccceeeeccCcceeEEEEecCC-CccceEEEecCCceEEEEEeccceeeEEEe-------cCCccee
Confidence 87531 112234577788999999999998872 145799999999999999999998876632 2345678
Q ss_pred CCCCCCCce-eeeeecceeeeeecCccccccc---cccccccCCCccccccccc-eEEEEEEeccCCccEeeecceeEEE
Q 000722 320 HPRAPNLDI-LTCVKDSHIWAIEHPTYSALTR---PLCELSSLVPPQVLAHHKK-LRVYCMVAHSLQPHLVATGTNVGVI 394 (1331)
Q Consensus 320 vafspdg~l-La~s~Dg~IWdl~~~~~~~l~~---~~~~~~~~~~~~~l~~h~~-~~I~~la~sp~~~~lLAtGs~DG~I 394 (1331)
++.+|-.+. .+|+++|.||-..-........ .-...........+.+|.+ ..|+|++.+- ++.+|++|+.||.|
T Consensus 223 v~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~-DgtlLlSGd~dg~V 301 (476)
T KOG0646|consen 223 VALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAIST-DGTLLLSGDEDGKV 301 (476)
T ss_pred EEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEec-CccEEEeeCCCCCE
Confidence 899998774 4888999987655322211111 0011112233445666655 4899999999 69999999999999
Q ss_pred EeecCCCCCCCCCCCC
Q 000722 395 ISEFDPRSLPAVAPLP 410 (1331)
Q Consensus 395 l~VWDlr~~p~i~~~~ 410 (1331)
+|||+.+++.+.++.
T Consensus 302 -cvWdi~S~Q~iRtl~ 316 (476)
T KOG0646|consen 302 -CVWDIYSKQCIRTLQ 316 (476)
T ss_pred -EEEecchHHHHHHHh
Confidence 899998877766653
No 117
>PTZ00420 coronin; Provisional
Probab=99.75 E-value=5.4e-18 Score=208.57 Aligned_cols=221 Identities=15% Similarity=0.157 Sum_probs=158.0
Q ss_pred eeccee-EeeeecccCCCCCccccccccceeeehhhcccCCC-cceEeecCCCceeeeeehhhhe--------eehhhcC
Q 000722 140 CVNKAI-FLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGD-VPLVAFGSSDGVIRVLSMISWK--------LVRRYTG 209 (1331)
Q Consensus 140 s~d~iI-vwDl~t~~~~~i~~~~~h~~~V~~Vaf~P~s~Spd-g~~LasGs~DGtIrlWDl~t~~--------~v~~~~~ 209 (1331)
+..+++ +|+... ...+..+.+|.+.|.+++| +|+ +.+|++|+.||+|+|||+.++. .+..+.
T Consensus 51 G~~gvI~L~~~~r--~~~v~~L~gH~~~V~~laf-----sP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~- 122 (568)
T PTZ00420 51 GLIGAIRLENQMR--KPPVIKLKGHTSSILDLQF-----NPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILK- 122 (568)
T ss_pred CceeEEEeeecCC--CceEEEEcCCCCCEEEEEE-----cCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEee-
Confidence 334455 566543 2345567889999999999 554 7899999999999999997542 222344
Q ss_pred CCccchhhhhHhhhccccE-EEeecCCCceEEEEeccCCCccccccccceeeeccCcEEEEEechhccCCCcEEEeecCc
Q 000722 210 GHKGSISCLMTFMASSGEA-LLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADK 288 (1331)
Q Consensus 210 gH~~~V~~vawf~~spdg~-lLaSgs~DgtIrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg 288 (1331)
+|...|.+++ ++|++. +|++++.|++|++||+++++.... +. |...|.+++|+| ++.+|++++.|+
T Consensus 123 gH~~~V~sVa---f~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~------i~-~~~~V~Slswsp---dG~lLat~s~D~ 189 (568)
T PTZ00420 123 GHKKKISIID---WNPMNYYIMCSSGFDSFVNIWDIENEKRAFQ------IN-MPKKLSSLKWNI---KGNLLSGTCVGK 189 (568)
T ss_pred cCCCcEEEEE---ECCCCCeEEEEEeCCCeEEEEECCCCcEEEE------Ee-cCCcEEEEEECC---CCCEEEEEecCC
Confidence 8999999998 678775 567999999999999998864332 33 567899999999 899999999999
Q ss_pred eeEeeeccchhhhcccCCCCccccccccc-----ccCCCCCCCc-eeeeeecc------eeeeeecCccccccccccccc
Q 000722 289 TLAIWDTVSFKELRRIKPVPKLACHSVAS-----WCHPRAPNLD-ILTCVKDS------HIWAIEHPTYSALTRPLCELS 356 (1331)
Q Consensus 289 ~IrIWDl~t~~~l~~~~~~~~l~~H~~~V-----~svafspdg~-lLa~s~Dg------~IWdl~~~~~~~l~~~~~~~~ 356 (1331)
.|+|||+++++.+.+ +.+|.+.+ +...|++++. ++++|.|+ +|||++...
T Consensus 190 ~IrIwD~Rsg~~i~t------l~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~------------ 251 (568)
T PTZ00420 190 HMHIIDPRKQEIASS------FHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTT------------ 251 (568)
T ss_pred EEEEEECCCCcEEEE------EecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCC------------
Confidence 999999999887765 56676543 3344567766 55666553 389998521
Q ss_pred cCCCccccccccceEEEEEEeccCCccEeeecceeEEEEeecCCCC
Q 000722 357 SLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPRS 402 (1331)
Q Consensus 357 ~~~~~~~l~~h~~~~I~~la~sp~~~~lLAtGs~DG~Il~VWDlr~ 402 (1331)
.++..+..+....+....|.++.+.++++|+.|+.| ++|++..
T Consensus 252 --~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tI-r~~e~~~ 294 (568)
T PTZ00420 252 --SALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNC-RYYQHSL 294 (568)
T ss_pred --CceEEEEecCCccceEEeeeCCCCCEEEEEECCCeE-EEEEccC
Confidence 122222222211122223345468889999999998 9999864
No 118
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=2.9e-17 Score=170.93 Aligned_cols=256 Identities=18% Similarity=0.263 Sum_probs=187.5
Q ss_pred ccccccCCCcEEEEEeecCCceeEeecCCCceeeeccccceEEeeeccCCcccchhhhhhhhhhcccccccCCCCccccc
Q 000722 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMR 83 (1331)
Q Consensus 4 l~~L~gHs~~V~~lafSPdg~~LaSgs~DGtV~VWD~~tg~~i~s~~~~~~~~i~~vspdg~~Lasgs~d~~g~~l~~l~ 83 (1331)
.+.-+.|.+.|.|.+|||+|.+|+||+.|.+|++.-+....+-.+ +| .|. ..++
T Consensus 82 ~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~---g~------------dle-----------~nmh 135 (350)
T KOG0641|consen 82 CKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNAT---GH------------DLE-----------FNMH 135 (350)
T ss_pred eeeccccCccEEEEEecCccCeEEecCCCceEEEEeccccccccc---Cc------------cee-----------eeec
Confidence 455577999999999999999999999999999875543222111 00 000 1134
Q ss_pred CCceeEEeeecchhhHHHHhhhccccccCCcccccccccccCCCCCCCCceEEEEEeecceeEe--eeecccCCCCCccc
Q 000722 84 GGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFL--DLVTMRGRDIPKQE 161 (1331)
Q Consensus 84 gg~V~sVaf~DgtIrvWdl~tg~~l~~~~~~~~~~~~~~V~svafspdg~~lLasgs~d~iIvw--Dl~t~~~~~i~~~~ 161 (1331)
.|.|+.++|.|+. ...+. +|++++.+..-++ |..++. ....+.
T Consensus 136 dgtirdl~fld~~--------------------------------~s~~~-il~s~gagdc~iy~tdc~~g~--~~~a~s 180 (350)
T KOG0641|consen 136 DGTIRDLAFLDDP--------------------------------ESGGA-ILASAGAGDCKIYITDCGRGQ--GFHALS 180 (350)
T ss_pred CCceeeeEEecCC--------------------------------CcCce-EEEecCCCcceEEEeecCCCC--cceeec
Confidence 5677777663221 11243 7777665544333 666644 455678
Q ss_pred cccccceee-ehhhcccCCCcceEeecCCCceeeeeehhhheeehhhcCC-C-----ccchhhhhHhhhccccEEEeecC
Q 000722 162 LDNKSLVCM-EFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGG-H-----KGSISCLMTFMASSGEALLVSGG 234 (1331)
Q Consensus 162 ~h~~~V~~V-af~P~s~Spdg~~LasGs~DGtIrlWDl~t~~~v~~~~~g-H-----~~~V~~vawf~~spdg~lLaSgs 234 (1331)
+|.+.|.++ .| ++-.+++|+.|.+||+||++-..++..+... | ...|.+++ ..|.|++|++|-
T Consensus 181 ghtghilalysw-------n~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~---vdpsgrll~sg~ 250 (350)
T KOG0641|consen 181 GHTGHILALYSW-------NGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVA---VDPSGRLLASGH 250 (350)
T ss_pred CCcccEEEEEEe-------cCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEE---ECCCcceeeecc
Confidence 888888775 45 7889999999999999999988888766311 2 35677776 899999999999
Q ss_pred CCceEEEEeccCCCccccccccceeeeccCcEEEEEechhccCCCcEEEeecCceeEeeeccchhhhcccCCCCcccccc
Q 000722 235 SDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHS 314 (1331)
Q Consensus 235 ~DgtIrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~ 314 (1331)
.|..+.+||++.++.++. +..|...|.|+.|+| ...|+++|+.|..|++=|++.. ..+.+ +......|.
T Consensus 251 ~dssc~lydirg~r~iq~------f~phsadir~vrfsp---~a~yllt~syd~~ikltdlqgd-la~el-~~~vv~ehk 319 (350)
T KOG0641|consen 251 ADSSCMLYDIRGGRMIQR------FHPHSADIRCVRFSP---GAHYLLTCSYDMKIKLTDLQGD-LAHEL-PIMVVAEHK 319 (350)
T ss_pred CCCceEEEEeeCCceeee------eCCCccceeEEEeCC---CceEEEEecccceEEEeecccc-hhhcC-ceEEEEecc
Confidence 999999999999987665 678999999999999 8899999999999999998743 22221 222356788
Q ss_pred cccccCCCCCCCc-eeeeeecce--eeeee
Q 000722 315 VASWCHPRAPNLD-ILTCVKDSH--IWAIE 341 (1331)
Q Consensus 315 ~~V~svafspdg~-lLa~s~Dg~--IWdl~ 341 (1331)
+.+..+.|+|..- +|+.+.|.+ +|-+.
T Consensus 320 dk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 320 DKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred CceEEEEecCccceeeeccCcceEEEeccC
Confidence 8888899999754 778888875 78653
No 119
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.74 E-value=2.7e-18 Score=192.52 Aligned_cols=243 Identities=16% Similarity=0.175 Sum_probs=180.1
Q ss_pred ccccccCCCcEEEEEeecCCceeEeecCCCceeeeccccceEEeeeccCCcccchhhhhhhhhhcccccccCCCCccccc
Q 000722 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMR 83 (1331)
Q Consensus 4 l~~L~gHs~~V~~lafSPdg~~LaSgs~DGtV~VWD~~tg~~i~s~~~~~~~~i~~vspdg~~Lasgs~d~~g~~l~~l~ 83 (1331)
+.+|.|..+.|+.++|.+++.++++++.|+.+++||+...+..+++.+ |.+.
T Consensus 212 ~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsG-Htdk--------------------------- 263 (459)
T KOG0288|consen 212 ISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSG-HTDK--------------------------- 263 (459)
T ss_pred hhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcc-cccc---------------------------
Confidence 467888889999999999999999999999999999998888888774 4333
Q ss_pred CCceeEEeeecchhhHHHHhhhccccccCCcccccccccccCCCCCCCCceEEEEEeeccee-EeeeecccCCCCCcccc
Q 000722 84 GGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQEL 162 (1331)
Q Consensus 84 gg~V~sVaf~DgtIrvWdl~tg~~l~~~~~~~~~~~~~~V~svafspdg~~lLasgs~d~iI-vwDl~t~~~~~i~~~~~ 162 (1331)
|+++.|..... -+++|+.|..+ .||+....+ .. ...
T Consensus 264 ---------------------------------------Vt~ak~~~~~~-~vVsgs~DRtiK~WDl~k~~C--~k-t~l 300 (459)
T KOG0288|consen 264 ---------------------------------------VTAAKFKLSHS-RVVSGSADRTIKLWDLQKAYC--SK-TVL 300 (459)
T ss_pred ---------------------------------------eeeehhhcccc-ceeeccccchhhhhhhhhhhe--ec-ccc
Confidence 23333333222 25566666655 566655322 11 112
Q ss_pred ccccceeeehhhcccCCCcceEeecCCCceeeeeehhhheeehhhcCCCccchhhhhHhhhccccEEEeecCCCceEEEE
Q 000722 163 DNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILW 242 (1331)
Q Consensus 163 h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrVW 242 (1331)
....+..|.. ....+++|..|++||+||.++..+..... .| +.|+++. .++++..|.+++.|.++.+.
T Consensus 301 ~~S~cnDI~~-------~~~~~~SgH~DkkvRfwD~Rs~~~~~sv~-~g-g~vtSl~---ls~~g~~lLsssRDdtl~vi 368 (459)
T KOG0288|consen 301 PGSQCNDIVC-------SISDVISGHFDKKVRFWDIRSADKTRSVP-LG-GRVTSLD---LSMDGLELLSSSRDDTLKVI 368 (459)
T ss_pred ccccccceEe-------cceeeeecccccceEEEeccCCceeeEee-cC-cceeeEe---eccCCeEEeeecCCCceeee
Confidence 2334444555 25568899999999999999999988875 44 4999998 89999999999999999999
Q ss_pred eccCCCccccccccceeeeccCcEEEEEechhccCCCcEEEeecCceeEeeeccchhhhcccCCCCcccccccccccCCC
Q 000722 243 SADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPR 322 (1331)
Q Consensus 243 Dl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svaf 322 (1331)
|+++....+.+.......+|+ ++.+.|+| ++.|+++||.||.|+||++.++++...+. .......|+++.|
T Consensus 369 DlRt~eI~~~~sA~g~k~asD--wtrvvfSp---d~~YvaAGS~dgsv~iW~v~tgKlE~~l~----~s~s~~aI~s~~W 439 (459)
T KOG0288|consen 369 DLRTKEIRQTFSAEGFKCASD--WTRVVFSP---DGSYVAAGSADGSVYIWSVFTGKLEKVLS----LSTSNAAITSLSW 439 (459)
T ss_pred ecccccEEEEeeccccccccc--cceeEECC---CCceeeeccCCCcEEEEEccCceEEEEec----cCCCCcceEEEEE
Confidence 999877655443333334444 88999999 89999999999999999999999876632 1222227999999
Q ss_pred CCCCc-eeeeeecce--ee
Q 000722 323 APNLD-ILTCVKDSH--IW 338 (1331)
Q Consensus 323 spdg~-lLa~s~Dg~--IW 338 (1331)
+|.|. +++++.+.. +|
T Consensus 440 ~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 440 NPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred cCCCchhhcccCCcceEec
Confidence 99998 457776653 66
No 120
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.74 E-value=2.3e-17 Score=194.78 Aligned_cols=236 Identities=16% Similarity=0.204 Sum_probs=187.9
Q ss_pred ccccccccccCCCCCCCCceEEEEEeeccee-EeeeecccCCCCCcccccccccee-eehhhcccCCCcceEeecCCCce
Q 000722 115 AVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQELDNKSLVC-MEFLSRSAVGDVPLVAFGSSDGV 192 (1331)
Q Consensus 115 ~~~~~~~~V~svafspdg~~lLasgs~d~iI-vwDl~t~~~~~i~~~~~h~~~V~~-Vaf~P~s~Spdg~~LasGs~DGt 192 (1331)
..+| +..|+.+++.+.. ++++++.|+.+ +|+-..........+..|.+.|.+ ++|.+ .++-.+++|+.|++
T Consensus 10 l~gH-~~DVr~v~~~~~~--~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e----~~~~~l~~g~~D~~ 82 (745)
T KOG0301|consen 10 LEGH-KSDVRAVAVTDGV--CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAE----SDKGRLVVGGMDTT 82 (745)
T ss_pred eccC-ccchheeEecCCe--EEeecCCCCceeeeeccCcccccceecccCcceeeccceecc----ccCcceEeecccce
Confidence 3444 6667777776655 78888878777 786654433333445667777777 88842 24556999999999
Q ss_pred eeeeehhhheeehhhcCCCccchhhhhHhhhccccEEEeecCCCceEEEEeccCCCccccccccceeeeccCcEEEEEec
Q 000722 193 IRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELS 272 (1331)
Q Consensus 193 IrlWDl~t~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafs 272 (1331)
|.+|...+..++..+. ||...|.|+. ...++. ++|||.|.++++|.... + ..++.+|...|+++.+-
T Consensus 83 i~v~~~~~~~P~~~Lk-gH~snVC~ls---~~~~~~-~iSgSWD~TakvW~~~~--l------~~~l~gH~asVWAv~~l 149 (745)
T KOG0301|consen 83 IIVFKLSQAEPLYTLK-GHKSNVCSLS---IGEDGT-LISGSWDSTAKVWRIGE--L------VYSLQGHTASVWAVASL 149 (745)
T ss_pred EEEEecCCCCchhhhh-ccccceeeee---cCCcCc-eEecccccceEEecchh--h------hcccCCcchheeeeeec
Confidence 9999999999999998 9999999997 344554 99999999999997643 2 23379999999999999
Q ss_pred hhccCCCcEEEeecCceeEeeeccchhhhcccCCCCcccccccccccCCCCCCCceeeeeecce--eeeeecCccccccc
Q 000722 273 RVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDILTCVKDSH--IWAIEHPTYSALTR 350 (1331)
Q Consensus 273 p~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg~lLa~s~Dg~--IWdl~~~~~~~l~~ 350 (1331)
| +. .++|||.|++||+|.- ++++++ +.+|++.|+.+++-+++.+++|+.||. +|++..
T Consensus 150 ~---e~-~~vTgsaDKtIklWk~--~~~l~t------f~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~~g-------- 209 (745)
T KOG0301|consen 150 P---EN-TYVTGSADKTIKLWKG--GTLLKT------FSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDLDG-------- 209 (745)
T ss_pred C---CC-cEEeccCcceeeeccC--Cchhhh------hccchhheeeeEEecCCCeEeecCCceEEEEeccC--------
Confidence 8 44 9999999999999986 556666 789999999999999999999999995 799853
Q ss_pred cccccccCCCccccccccceEEEEEEeccCCccEeeecceeEEEEeecCCC
Q 000722 351 PLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPR 401 (1331)
Q Consensus 351 ~~~~~~~~~~~~~l~~h~~~~I~~la~sp~~~~lLAtGs~DG~Il~VWDlr 401 (1331)
..+..+.+|.. .|+++...+ +..++++++.|+++ ++|+..
T Consensus 210 --------e~l~~~~ghtn-~vYsis~~~-~~~~Ivs~gEDrtl-riW~~~ 249 (745)
T KOG0301|consen 210 --------EVLLEMHGHTN-FVYSISMAL-SDGLIVSTGEDRTL-RIWKKD 249 (745)
T ss_pred --------ceeeeeeccce-EEEEEEecC-CCCeEEEecCCceE-EEeecC
Confidence 23556778888 899999666 45679999999998 899854
No 121
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.74 E-value=1.2e-18 Score=205.92 Aligned_cols=189 Identities=20% Similarity=0.260 Sum_probs=166.4
Q ss_pred cccccCCCCCCCCceEEEEEeeccee-EeeeecccCCCCCccccccccceeeehhhcccCCCcceEeecCCCceeeeeeh
Q 000722 120 TSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSM 198 (1331)
Q Consensus 120 ~~~V~svafspdg~~lLasgs~d~iI-vwDl~t~~~~~i~~~~~h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl 198 (1331)
...|.++.|++... +|+.|+.++++ +||+...+ .+.++.+|...+.+++| +|.+.+.++|+.|+.+++||.
T Consensus 70 espIeSl~f~~~E~-LlaagsasgtiK~wDleeAk--~vrtLtgh~~~~~sv~f-----~P~~~~~a~gStdtd~~iwD~ 141 (825)
T KOG0267|consen 70 ESPIESLTFDTSER-LLAAGSASGTIKVWDLEEAK--IVRTLTGHLLNITSVDF-----HPYGEFFASGSTDTDLKIWDI 141 (825)
T ss_pred CCcceeeecCcchh-hhcccccCCceeeeehhhhh--hhhhhhccccCcceeee-----ccceEEeccccccccceehhh
Confidence 77788999999886 99999999888 89999754 46688999999999999 568999999999999999999
Q ss_pred hhheeehhhcCCCccchhhhhHhhhccccEEEeecCCCceEEEEeccCCCccccccccceeeeccCcEEEEEechhccCC
Q 000722 199 ISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGS 278 (1331)
Q Consensus 199 ~t~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg 278 (1331)
+...|.+.+. +|...|.++. |+|+|.++++|+.|.+++|||...|+...+ |.+|++.|.++.||| ..
T Consensus 142 Rk~Gc~~~~~-s~~~vv~~l~---lsP~Gr~v~~g~ed~tvki~d~~agk~~~e------f~~~e~~v~sle~hp---~e 208 (825)
T KOG0267|consen 142 RKKGCSHTYK-SHTRVVDVLR---LSPDGRWVASGGEDNTVKIWDLTAGKLSKE------FKSHEGKVQSLEFHP---LE 208 (825)
T ss_pred hccCceeeec-CCcceeEEEe---ecCCCceeeccCCcceeeeecccccccccc------cccccccccccccCc---hh
Confidence 9888999987 7999999998 899999999999999999999999987665 688999999999999 67
Q ss_pred CcEEEeecCceeEeeeccchhhhcccCCCCcccccccccccCCCCCCCceeeeeecc
Q 000722 279 PQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDILTCVKDS 335 (1331)
Q Consensus 279 ~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg~lLa~s~Dg 335 (1331)
-++++||.|++|++||+++...+... ......|.+..|+|++..+.+|...
T Consensus 209 ~Lla~Gs~d~tv~f~dletfe~I~s~------~~~~~~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 209 VLLAPGSSDRTVRFWDLETFEVISSG------KPETDGVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred hhhccCCCCceeeeeccceeEEeecc------CCccCCceeeeecCCceeeecCchh
Confidence 88999999999999999988776653 3336788999999999988666544
No 122
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.73 E-value=3.9e-16 Score=194.04 Aligned_cols=211 Identities=18% Similarity=0.271 Sum_probs=156.2
Q ss_pred cccceeeehhhcccCCCcceEeecCCCceeeeeehhhh------eeehhhcCCCccchhhhhHhhhccc-cEEEeecCCC
Q 000722 164 NKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISW------KLVRRYTGGHKGSISCLMTFMASSG-EALLVSGGSD 236 (1331)
Q Consensus 164 ~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~------~~v~~~~~gH~~~V~~vawf~~spd-g~lLaSgs~D 236 (1331)
....++++|.+....+. .+|+.|.+||.|.+||...- ..+.+.. .|++.|..+. |++. +++|++|+.|
T Consensus 64 ~~rF~kL~W~~~g~~~~-GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~-~h~G~V~gLD---fN~~q~nlLASGa~~ 138 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSHSH-GLIAGGLEDGNIVLYDPASIIANASEEVLATKS-KHTGPVLGLD---FNPFQGNLLASGADD 138 (1049)
T ss_pred cccceeeeecccCCCcc-ceeeccccCCceEEecchhhccCcchHHHhhhc-ccCCceeeee---ccccCCceeeccCCC
Confidence 45778899954211111 25899999999999998752 2344444 7999999998 5665 4599999999
Q ss_pred ceEEEEeccCCCccccccccceeeeccCcEEEEEechhccCCCcEEEeecCceeEeeeccchhhhcccCCCCcccccc--
Q 000722 237 GLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHS-- 314 (1331)
Q Consensus 237 gtIrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~-- 314 (1331)
|.|.|||++..+.-... . -....+.|.+++|+. ...++|++++.+|.+.|||++..+.+-. +..|.
T Consensus 139 geI~iWDlnn~~tP~~~--~--~~~~~~eI~~lsWNr--kvqhILAS~s~sg~~~iWDlr~~~pii~------ls~~~~~ 206 (1049)
T KOG0307|consen 139 GEILIWDLNKPETPFTP--G--SQAPPSEIKCLSWNR--KVSHILASGSPSGRAVIWDLRKKKPIIK------LSDTPGR 206 (1049)
T ss_pred CcEEEeccCCcCCCCCC--C--CCCCcccceEeccch--hhhHHhhccCCCCCceeccccCCCcccc------cccCCCc
Confidence 99999999875432211 0 122346799999998 4678999999999999999998765544 33333
Q ss_pred cccccCCCCCCCc--eeeeeecce-----eeeeecCccccccccccccccCCCccccccccceEEEEEEeccCCccEeee
Q 000722 315 VASWCHPRAPNLD--ILTCVKDSH-----IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVAT 387 (1331)
Q Consensus 315 ~~V~svafspdg~--lLa~s~Dg~-----IWdl~~~~~~~l~~~~~~~~~~~~~~~l~~h~~~~I~~la~sp~~~~lLAt 387 (1331)
..+..+.|||++- ++++++|.+ +||++.. ..++.++.+|.. .|.++.|++.+..++++
T Consensus 207 ~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~a--------------ssP~k~~~~H~~-GilslsWc~~D~~lllS 271 (1049)
T KOG0307|consen 207 MHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFA--------------SSPLKILEGHQR-GILSLSWCPQDPRLLLS 271 (1049)
T ss_pred cceeeeeeCCCCceeeeeecCCCCCceeEeeccccc--------------CCchhhhccccc-ceeeeccCCCCchhhhc
Confidence 3466899999965 666666553 7999853 246778888888 89999999988899999
Q ss_pred cceeEEEEeecCCCCCCCCC
Q 000722 388 GTNVGVIISEFDPRSLPAVA 407 (1331)
Q Consensus 388 Gs~DG~Il~VWDlr~~p~i~ 407 (1331)
++.|+.| .+|+..+...+.
T Consensus 272 sgkD~~i-i~wN~~tgEvl~ 290 (1049)
T KOG0307|consen 272 SGKDNRI-ICWNPNTGEVLG 290 (1049)
T ss_pred ccCCCCe-eEecCCCceEee
Confidence 9999998 499976543333
No 123
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.73 E-value=2e-17 Score=180.48 Aligned_cols=244 Identities=13% Similarity=0.195 Sum_probs=181.3
Q ss_pred ccccccCCCcEEEEEeecCCceeEeecCCCceeeeccccceEEeeeccCCcccchhhh--hh--hhhhcccccccCCCCc
Q 000722 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVG--AK--LEKLAEGELEHKGKPT 79 (1331)
Q Consensus 4 l~~L~gHs~~V~~lafSPdg~~LaSgs~DGtV~VWD~~tg~~i~s~~~~~~~~i~~vs--pd--g~~Lasgs~d~~g~~l 79 (1331)
+-.+..|...|++++.+ ++|+|+|+.|-+|+|||+.+...+..+. .|.+.+.++. +. ...|.+++
T Consensus 36 lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll-~HagsitaL~F~~~~S~shLlS~s-------- 104 (362)
T KOG0294|consen 36 LFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILL-SHAGSITALKFYPPLSKSHLLSGS-------- 104 (362)
T ss_pred cccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhccee-ccccceEEEEecCCcchhheeeec--------
Confidence 45688999999999987 8999999999999999999888777776 3333333332 11 11333332
Q ss_pred ccccCCceeEEeeecchhhHHHHhhhccccccCCcccccccccccCCCCCCCCceEEEEEeeccee-EeeeecccCCCCC
Q 000722 80 EAMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIP 158 (1331)
Q Consensus 80 ~~l~gg~V~sVaf~DgtIrvWdl~tg~~l~~~~~~~~~~~~~~V~svafspdg~~lLasgs~d~iI-vwDl~t~~~~~i~ 158 (1331)
.||.|.+|+...-.++ ..+..| ...|+.++.||.++ +..+.+.|+.+ .||+.+++...+.
T Consensus 105 -------------dDG~i~iw~~~~W~~~----~slK~H-~~~Vt~lsiHPS~K-LALsVg~D~~lr~WNLV~Gr~a~v~ 165 (362)
T KOG0294|consen 105 -------------DDGHIIIWRVGSWELL----KSLKAH-KGQVTDLSIHPSGK-LALSVGGDQVLRTWNLVRGRVAFVL 165 (362)
T ss_pred -------------CCCcEEEEEcCCeEEe----eeeccc-ccccceeEecCCCc-eEEEEcCCceeeeehhhcCccceee
Confidence 6899999998776554 455566 55699999999998 66666666666 8999987754432
Q ss_pred ccccccccceeeehhhcccCCCcceEeecCCCceeeeeehhhheeehhhcCCCccchhhhhHhhhccccEEEeecCCCce
Q 000722 159 KQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGL 238 (1331)
Q Consensus 159 ~~~~h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~Dgt 238 (1331)
.+ ....+.|.| +|.|.+++.++.++ |-+|.+.+......+. ....+.|+.| -++..|++|+.|+.
T Consensus 166 ~L---~~~at~v~w-----~~~Gd~F~v~~~~~-i~i~q~d~A~v~~~i~--~~~r~l~~~~----l~~~~L~vG~d~~~ 230 (362)
T KOG0294|consen 166 NL---KNKATLVSW-----SPQGDHFVVSGRNK-IDIYQLDNASVFREIE--NPKRILCATF----LDGSELLVGGDNEW 230 (362)
T ss_pred cc---CCcceeeEE-----cCCCCEEEEEeccE-EEEEecccHhHhhhhh--ccccceeeee----cCCceEEEecCCce
Confidence 22 233445899 67899888887765 8899998877766654 3355666653 26778999999999
Q ss_pred EEEEeccCCCccccccccceeeeccCcEEEEEechhccCCCcEEEeecCceeEeeeccchh
Q 000722 239 LILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFK 299 (1331)
Q Consensus 239 IrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~ 299 (1331)
|++||.++..+ ...+.+|...|-++.+.-. +++.+|+|+|.||.|+|||++...
T Consensus 231 i~~~D~ds~~~------~~~~~AH~~RVK~i~~~~~-~~~~~lvTaSSDG~I~vWd~~~~~ 284 (362)
T KOG0294|consen 231 ISLKDTDSDTP------LTEFLAHENRVKDIASYTN-PEHEYLVTASSDGFIKVWDIDMET 284 (362)
T ss_pred EEEeccCCCcc------ceeeecchhheeeeEEEec-CCceEEEEeccCceEEEEEccccc
Confidence 99999988553 4457999999999985432 367899999999999999988653
No 124
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.72 E-value=5.8e-17 Score=184.02 Aligned_cols=301 Identities=16% Similarity=0.207 Sum_probs=199.7
Q ss_pred ccccccCCCcEEEEEeecCCc--eeEeecCCCceeeeccccceEEeeeccCCcccchhhhhhhhhhcccccccCCCCccc
Q 000722 4 LKAFRPTNDKIVKIQLHPTHP--WLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEA 81 (1331)
Q Consensus 4 l~~L~gHs~~V~~lafSPdg~--~LaSgs~DGtV~VWD~~tg~~i~s~~~~~~~~i~~vspdg~~Lasgs~d~~g~~l~~ 81 (1331)
+...+-|.++|++++|||..+ ++++|+..|.|-+||+.+.+...
T Consensus 179 ~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~---------------------------------- 224 (498)
T KOG4328|consen 179 LNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDK---------------------------------- 224 (498)
T ss_pred cceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCcc----------------------------------
Confidence 445677999999999999865 88999999999999986321100
Q ss_pred ccCCceeEEeeecchhhHHHHhhhccccccCCcccccccccccCCCCCCCCceEEEEEeecceeEe-eeecccCCCCCcc
Q 000722 82 MRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFL-DLVTMRGRDIPKQ 160 (1331)
Q Consensus 82 l~gg~V~sVaf~DgtIrvWdl~tg~~l~~~~~~~~~~~~~~V~svafspdg~~lLasgs~d~iIvw-Dl~t~~~~~i~~~ 160 (1331)
|+. .... .+...|.++.|+|.....+.+.+.|+.+++ |+++.....+...
T Consensus 225 ------------d~v----------------~~f~-~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~ 275 (498)
T KOG4328|consen 225 ------------DGV----------------YLFT-PHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSL 275 (498)
T ss_pred ------------Cce----------------EEec-cCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhc
Confidence 000 0011 125568889999988778999999999977 9987655554444
Q ss_pred ccccccceeeehhhcccCCCcceEeecCCCceeeeeehhhhee-ehhhcCCCccchhhhhHhhhcc-ccEEEeecCCCce
Q 000722 161 ELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKL-VRRYTGGHKGSISCLMTFMASS-GEALLVSGGSDGL 238 (1331)
Q Consensus 161 ~~h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~~~-v~~~~~gH~~~V~~vawf~~sp-dg~lLaSgs~Dgt 238 (1331)
......+..++| +.+...++.|..=|...+||.++... ...+. -|...|+.++ ++| ...+|+|+|.|++
T Consensus 276 ~~d~~~fs~~d~-----~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~-lh~kKI~sv~---~NP~~p~~laT~s~D~T 346 (498)
T KOG4328|consen 276 DTDNIWFSSLDF-----SAESRSVLFGDNVGNFNVIDLRTDGSEYENLR-LHKKKITSVA---LNPVCPWFLATASLDQT 346 (498)
T ss_pred Cccceeeeeccc-----cCCCccEEEeecccceEEEEeecCCccchhhh-hhhcccceee---cCCCCchheeecccCcc
Confidence 445667778888 56677777777777999999997654 44444 6888999998 444 4567899999999
Q ss_pred EEEEeccCCCccccccccceeeeccCcEEEEEechhccCCCcEEEeecCceeEeeeccchhhhcccCCCCccccccc---
Q 000722 239 LILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSV--- 315 (1331)
Q Consensus 239 IrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~--- 315 (1331)
.+|||++.-..-.+ |......|...|+++.|+| ++-.|++.+.|..|||||.. ++....+....-.|..
T Consensus 347 ~kIWD~R~l~~K~s--p~lst~~HrrsV~sAyFSP---s~gtl~TT~~D~~IRv~dss---~~sa~~~p~~~I~Hn~~t~ 418 (498)
T KOG4328|consen 347 AKIWDLRQLRGKAS--PFLSTLPHRRSVNSAYFSP---SGGTLLTTCQDNEIRVFDSS---CISAKDEPLGTIPHNNRTG 418 (498)
T ss_pred eeeeehhhhcCCCC--cceecccccceeeeeEEcC---CCCceEeeccCCceEEeecc---cccccCCccceeeccCccc
Confidence 99999986443221 3344567999999999999 44449999999999999974 2211111111122222
Q ss_pred ---ccccCCCCCCCceeeeeecce---eeeeecCccccccccccccccCCCccccccccceEEEE-EEeccCCccEeeec
Q 000722 316 ---ASWCHPRAPNLDILTCVKDSH---IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYC-MVAHSLQPHLVATG 388 (1331)
Q Consensus 316 ---~V~svafspdg~lLa~s~Dg~---IWdl~~~~~~~l~~~~~~~~~~~~~~~l~~h~~~~I~~-la~sp~~~~lLAtG 388 (1331)
......|.|+..++..+.-.+ |+|-..+. .+..+.......|.+ ..|||.+..+++-|
T Consensus 419 RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q---------------~v~el~~P~~~tI~~vn~~HP~~~~~~aG~ 483 (498)
T KOG4328|consen 419 RWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQ---------------MVCELHDPESSTIPSVNEFHPMRDTLAAGG 483 (498)
T ss_pred ccccchhheeCCCccEEEEeccCcceeEEcCCCCE---------------EeeeccCccccccccceeecccccceeccC
Confidence 234678999887776554332 44443221 111211111113444 48999644455555
Q ss_pred ceeEEEEeecCC
Q 000722 389 TNVGVIISEFDP 400 (1331)
Q Consensus 389 s~DG~Il~VWDl 400 (1331)
+..|.| +||.-
T Consensus 484 ~s~Gki-~vft~ 494 (498)
T KOG4328|consen 484 NSSGKI-YVFTN 494 (498)
T ss_pred CccceE-EEEec
Confidence 566665 77753
No 125
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.72 E-value=1.1e-17 Score=199.51 Aligned_cols=196 Identities=16% Similarity=0.248 Sum_probs=156.2
Q ss_pred cccccCCCCCCCCceEEEEEeeccee-EeeeecccCCCCCccccccccceeeehhhcccCCCcceEeecCCCceeeeeeh
Q 000722 120 TSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSM 198 (1331)
Q Consensus 120 ~~~V~svafspdg~~lLasgs~d~iI-vwDl~t~~~~~i~~~~~h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl 198 (1331)
...++++.|++..+++|++|+.|+.+ .||++..+ ...++......|+.|.|+|. .+..++++.+.|.+++||+
T Consensus 133 ~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~--S~~t~~~nSESiRDV~fsp~----~~~~F~s~~dsG~lqlWDl 206 (839)
T KOG0269|consen 133 ERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKK--SKSTFRSNSESIRDVKFSPG----YGNKFASIHDSGYLQLWDL 206 (839)
T ss_pred ccceeeeeeccCCccEEEecCCCceEEEEeeeccc--ccccccccchhhhceeeccC----CCceEEEecCCceEEEeec
Confidence 55678899999999999999999999 89998754 33455667889999999773 5789999999999999999
Q ss_pred hhh-eeehhhcCCCccchhhhhHhhhccccEEEeecCCCceEEEEeccCCCccccccccceeeeccCcEEEEEechhccC
Q 000722 199 ISW-KLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGG 277 (1331)
Q Consensus 199 ~t~-~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~d 277 (1331)
+.. ++...+. +|.++|.|+.| +|++.+|+|||.|++|+|||+.+.+.- +..++. ...+|.+|.|-| ..
T Consensus 207 Rqp~r~~~k~~-AH~GpV~c~nw---hPnr~~lATGGRDK~vkiWd~t~~~~~----~~~tIn-Tiapv~rVkWRP--~~ 275 (839)
T KOG0269|consen 207 RQPDRCEKKLT-AHNGPVLCLNW---HPNREWLATGGRDKMVKIWDMTDSRAK----PKHTIN-TIAPVGRVKWRP--AR 275 (839)
T ss_pred cCchhHHHHhh-cccCceEEEee---cCCCceeeecCCCccEEEEeccCCCcc----ceeEEe-ecceeeeeeecc--Cc
Confidence 864 5666666 99999999995 789999999999999999999876532 222222 346799999999 35
Q ss_pred CCcEEEee--cCceeEeeeccchhhhcccCCCCcccccccccccCCCCCCCc--eeeeeeccee
Q 000722 278 SPQLITIG--ADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLD--ILTCVKDSHI 337 (1331)
Q Consensus 278 g~~LaSgs--~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg~--lLa~s~Dg~I 337 (1331)
..+|++++ .|-.|+|||++. .+-|...+..|+..++.++|..... +++|+.|++|
T Consensus 276 ~~hLAtcsmv~dtsV~VWDvrR-----PYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv 334 (839)
T KOG0269|consen 276 SYHLATCSMVVDTSVHVWDVRR-----PYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTV 334 (839)
T ss_pred cchhhhhhccccceEEEEeecc-----ccccceeeeccCccccceeccCCCceeeEeecCccHH
Confidence 56777776 488999999873 3445667889999999999976322 5588888864
No 126
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.72 E-value=1.3e-16 Score=173.55 Aligned_cols=232 Identities=14% Similarity=0.150 Sum_probs=156.7
Q ss_pred cccccccceeeehhhcccCCCcceEeecCCCceeeeeehh---------hheeehhhcCCCccchhhhhHhhhccccEEE
Q 000722 160 QELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMI---------SWKLVRRYTGGHKGSISCLMTFMASSGEALL 230 (1331)
Q Consensus 160 ~~~h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~---------t~~~v~~~~~gH~~~V~~vawf~~spdg~lL 230 (1331)
.+.|.+.|..|.|-+ ..-|+.++++|.|++++||.=. .+....++. ...+.|+.++ |....-|-.+
T Consensus 55 Wrah~~Si~rV~WAh---PEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~-DsrssV~DV~-FaP~hlGLkl 129 (361)
T KOG2445|consen 55 WRAHDGSIWRVVWAH---PEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLV-DSRSSVTDVK-FAPKHLGLKL 129 (361)
T ss_pred EEecCCcEEEEEecC---ccccceEEEEecCCceeeeeecccccccccceeEEEEEee-cCCcceeEEE-ecchhcceEE
Confidence 355667777777754 2358889999999999999752 122233333 5677899998 3234457899
Q ss_pred eecCCCceEEEEeccCCCcccccccccee-------eeccCcEEEEEechhccCCCcEEEeecC-----ceeEeeeccch
Q 000722 231 VSGGSDGLLILWSADHGQDSRELVPKLSL-------KAHDGGVVAVELSRVMGGSPQLITIGAD-----KTLAIWDTVSF 298 (1331)
Q Consensus 231 aSgs~DgtIrVWDl~tg~~~~~~~~~~~l-------~gH~~~V~svafsp~~~dg~~LaSgs~D-----g~IrIWDl~t~ 298 (1331)
++++.||.+|||+.-..-.+..|.....+ ..|...-.|+.|+|..-..++|+.|+++ +.++||.....
T Consensus 130 A~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~ 209 (361)
T KOG2445|consen 130 AAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNEN 209 (361)
T ss_pred EEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCC
Confidence 99999999999987654433333222222 2466778899999855566889998876 58899987654
Q ss_pred hhhcccCCCCcccccccccccCCCCCC-Cc---ee-eeeecc-eeeeeecCcccccccc--ccccc---cCCCccccccc
Q 000722 299 KELRRIKPVPKLACHSVASWCHPRAPN-LD---IL-TCVKDS-HIWAIEHPTYSALTRP--LCELS---SLVPPQVLAHH 367 (1331)
Q Consensus 299 ~~l~~~~~~~~l~~H~~~V~svafspd-g~---lL-a~s~Dg-~IWdl~~~~~~~l~~~--~~~~~---~~~~~~~l~~h 367 (1331)
. ++...+.++.+|+..|+.++|.|+ |+ +| +++.|| +||.+........... ..+.. ....+..+..|
T Consensus 210 ~--rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDgv~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H 287 (361)
T KOG2445|consen 210 G--RKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDGVRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDH 287 (361)
T ss_pred c--ceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCcEEEEEEeeccchhhhhcccCCCCccccceEEeeeccCC
Confidence 3 222234557899999999999998 43 44 577886 6898874211000000 00000 11224457778
Q ss_pred cceEEEEEEeccCCccEeeecceeEEEEeecCCC
Q 000722 368 KKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPR 401 (1331)
Q Consensus 368 ~~~~I~~la~sp~~~~lLAtGs~DG~Il~VWDlr 401 (1331)
+. .||.+.|+- .|..|++.++||+| |+|...
T Consensus 288 ~~-~VWrv~wNm-tGtiLsStGdDG~V-RLWkan 318 (361)
T KOG2445|consen 288 NG-EVWRVRWNM-TGTILSSTGDDGCV-RLWKAN 318 (361)
T ss_pred CC-ceEEEEEee-eeeEEeecCCCcee-eehhhh
Confidence 87 899999998 58889999999998 999753
No 127
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.72 E-value=5.7e-17 Score=176.01 Aligned_cols=271 Identities=13% Similarity=0.131 Sum_probs=186.6
Q ss_pred cccccccCCCCCCCCceEEEEEeeccee-EeeeecccCCCCCccccccccceeeehhhcccCCCcceEeecCCCceeeee
Q 000722 118 NVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVL 196 (1331)
Q Consensus 118 ~~~~~V~svafspdg~~lLasgs~d~iI-vwDl~t~~~~~i~~~~~h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlW 196 (1331)
...+.|.+++|||....++++++.|+.+ +|+++......-+....|.++|.|++| +.+|..+++|+.|+.+++|
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~W-----sddgskVf~g~~Dk~~k~w 99 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCW-----SDDGSKVFSGGCDKQAKLW 99 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEE-----ccCCceEEeeccCCceEEE
Confidence 3366789999999766688899999888 788876311122445778999999999 7899999999999999999
Q ss_pred ehhhheeehhhcCCCccchhhhhHhhhccccEEEeecCCCceEEEEeccCCCccccccccceeeeccCcEEEEEechhcc
Q 000722 197 SMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMG 276 (1331)
Q Consensus 197 Dl~t~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~ 276 (1331)
|+.+++....- .|..+|.++.|+ ....-..|+|||.|.+|+.||.+....+.+ +. -...|.++..-
T Consensus 100 DL~S~Q~~~v~--~Hd~pvkt~~wv-~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t------~~-LPeRvYa~Dv~---- 165 (347)
T KOG0647|consen 100 DLASGQVSQVA--AHDAPVKTCHWV-PGMNYQCLVTGSWDKTLKFWDTRSSNPVAT------LQ-LPERVYAADVL---- 165 (347)
T ss_pred EccCCCeeeee--ecccceeEEEEe-cCCCcceeEecccccceeecccCCCCeeee------ee-ccceeeehhcc----
Confidence 99999665543 799999999975 344456899999999999999997764433 22 23446666653
Q ss_pred CCCcEEEeecCceeEeeeccchhhhcccCCCCcccccccccccCCCCCCCc-eeeeeecce--eeeeecCcccccccccc
Q 000722 277 GSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLD-ILTCVKDSH--IWAIEHPTYSALTRPLC 353 (1331)
Q Consensus 277 dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg~-lLa~s~Dg~--IWdl~~~~~~~l~~~~~ 353 (1331)
.++++++..++.|.+|+++++..... .. .....-.+.|++..+|.+ ++.|+-+|+ |..++.+.-
T Consensus 166 -~pm~vVata~r~i~vynL~n~~te~k--~~--~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~-------- 232 (347)
T KOG0647|consen 166 -YPMAVVATAERHIAVYNLENPPTEFK--RI--ESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNP-------- 232 (347)
T ss_pred -CceeEEEecCCcEEEEEcCCCcchhh--hh--cCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCc--------
Confidence 36899999999999999976542211 10 011223466788887766 567888887 444443211
Q ss_pred ccccCCCcccccccc--------ceEEEEEEeccCCccEeeecceeEEEEeecCCCCCCCCCCCCCCCCCCCcceEEEee
Q 000722 354 ELSSLVPPQVLAHHK--------KLRVYCMVAHSLQPHLVATGTNVGVIISEFDPRSLPAVAPLPTPSGSRDHSAVYIVE 425 (1331)
Q Consensus 354 ~~~~~~~~~~l~~h~--------~~~I~~la~sp~~~~lLAtGs~DG~Il~VWDlr~~p~i~~~~t~s~~~~~s~~~~~~ 425 (1331)
+.-.+|+-|. -..|++|+|||..+ .|+|.+.||++ ..||-..+..+.+.++..+. -..+.|-.+
T Consensus 233 -----~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hg-tlvTaGsDGtf-~FWDkdar~kLk~s~~~~qp-Itcc~fn~~ 304 (347)
T KOG0647|consen 233 -----KDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHG-TLVTAGSDGTF-SFWDKDARTKLKTSETHPQP-ITCCSFNRN 304 (347)
T ss_pred -----cCceeEEEeccCCCCCCceEEecceEeecccc-eEEEecCCceE-EEecchhhhhhhccCcCCCc-cceeEecCC
Confidence 0011122121 23688999999644 59999999998 79998665555443332221 133444444
Q ss_pred eee
Q 000722 426 REL 428 (1331)
Q Consensus 426 ~~l 428 (1331)
+.+
T Consensus 305 G~i 307 (347)
T KOG0647|consen 305 GSI 307 (347)
T ss_pred CCE
Confidence 443
No 128
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.72 E-value=6.5e-18 Score=199.81 Aligned_cols=245 Identities=20% Similarity=0.252 Sum_probs=197.5
Q ss_pred cchhhHHHHhhhccccccCCcccccccccccCCCCCCCCceEEEEEeeccee-EeeeecccCCCCCccccccccceeeeh
Q 000722 94 DDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQELDNKSLVCMEF 172 (1331)
Q Consensus 94 DgtIrvWdl~tg~~l~~~~~~~~~~~~~~V~svafspdg~~lLasgs~d~iI-vwDl~t~~~~~i~~~~~h~~~V~~Vaf 172 (1331)
+..+++||.....+. ...+.++..-..++ .+++|+.+..+ +|.... ...+..+.+|..+|.|+.|
T Consensus 13 ~t~Lr~~~~~~~~~h-----------saav~~lk~~~s~r-~~~~Gg~~~k~~L~~i~k--p~~i~S~~~hespIeSl~f 78 (825)
T KOG0267|consen 13 ATKLRVWDTREFVAH-----------SAAVGCLKIRKSSR-SLVTGGEDEKVNLWAIGK--PNAITSLTGHESPIESLTF 78 (825)
T ss_pred eeccccccchhhhhh-----------hhhhceeeeeccce-eeccCCCceeeccccccC--CchhheeeccCCcceeeec
Confidence 445678886544332 44455555544454 88999999888 886654 3355568999999999999
Q ss_pred hhcccCCCcceEeecCCCceeeeeehhhheeehhhcCCCccchhhhhHhhhccccEEEeecCCCceEEEEeccCCCcccc
Q 000722 173 LSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRE 252 (1331)
Q Consensus 173 ~P~s~Spdg~~LasGs~DGtIrlWDl~t~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrVWDl~tg~~~~~ 252 (1331)
+++..+|+.|+.+|+|++||++..+.++++. ||...+.++. |+|-+.++++|+.|+.+++||.+...|.+
T Consensus 79 -----~~~E~LlaagsasgtiK~wDleeAk~vrtLt-gh~~~~~sv~---f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~- 148 (825)
T KOG0267|consen 79 -----DTSERLLAAGSASGTIKVWDLEEAKIVRTLT-GHLLNITSVD---FHPYGEFFASGSTDTDLKIWDIRKKGCSH- 148 (825)
T ss_pred -----CcchhhhcccccCCceeeeehhhhhhhhhhh-ccccCcceee---eccceEEeccccccccceehhhhccCcee-
Confidence 6788899999999999999999999999998 9999999998 79999999999999999999998665544
Q ss_pred ccccceeeeccCcEEEEEechhccCCCcEEEeecCceeEeeeccchhhhcccCCCCcccccccccccCCCCCCCcee-ee
Q 000722 253 LVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDIL-TC 331 (1331)
Q Consensus 253 ~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg~lL-a~ 331 (1331)
.+.+|...|..+.|+| +|.++++|++|.+++|||...|+.+.. +..|...+.++.|+|..-++ .|
T Consensus 149 -----~~~s~~~vv~~l~lsP---~Gr~v~~g~ed~tvki~d~~agk~~~e------f~~~e~~v~sle~hp~e~Lla~G 214 (825)
T KOG0267|consen 149 -----TYKSHTRVVDVLRLSP---DGRWVASGGEDNTVKIWDLTAGKLSKE------FKSHEGKVQSLEFHPLEVLLAPG 214 (825)
T ss_pred -----eecCCcceeEEEeecC---CCceeeccCCcceeeeecccccccccc------cccccccccccccCchhhhhccC
Confidence 4688999999999999 899999999999999999999988766 67899999999999988777 57
Q ss_pred eecce--eeeeecCccccccccccccccCCCccccccccceEEEEEEeccCCccEeeecceeEE
Q 000722 332 VKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGV 393 (1331)
Q Consensus 332 s~Dg~--IWdl~~~~~~~l~~~~~~~~~~~~~~~l~~h~~~~I~~la~sp~~~~lLAtGs~DG~ 393 (1331)
|.|.+ +||+.+... +....+... .|.|..|+| ++..+++|..+..
T Consensus 215 s~d~tv~f~dletfe~---------------I~s~~~~~~-~v~~~~fn~-~~~~~~~G~q~sl 261 (825)
T KOG0267|consen 215 SSDRTVRFWDLETFEV---------------ISSGKPETD-GVRSLAFNP-DGKIVLSGEQISL 261 (825)
T ss_pred CCCceeeeeccceeEE---------------eeccCCccC-CceeeeecC-CceeeecCchhhh
Confidence 78885 899985311 112223333 799999999 5777888877655
No 129
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.72 E-value=3.9e-17 Score=178.20 Aligned_cols=217 Identities=23% Similarity=0.308 Sum_probs=160.9
Q ss_pred CCccccccccceeeehhhcccCCCcceEeecCCCceeeeeehhhheeehhhcCCCccchhhhhHhhhcccc--EEEeecC
Q 000722 157 IPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGE--ALLVSGG 234 (1331)
Q Consensus 157 i~~~~~h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~~~v~~~~~gH~~~V~~vawf~~spdg--~lLaSgs 234 (1331)
+..+..|...|+|++. +++++++||.|-+|+|||+++...+..+. .|.+.|+++. |.++- +.|++|+
T Consensus 36 lF~~~aH~~sitavAV-------s~~~~aSGssDetI~IYDm~k~~qlg~ll-~HagsitaL~---F~~~~S~shLlS~s 104 (362)
T KOG0294|consen 36 LFAFSAHAGSITALAV-------SGPYVASGSSDETIHIYDMRKRKQLGILL-SHAGSITALK---FYPPLSKSHLLSGS 104 (362)
T ss_pred cccccccccceeEEEe-------cceeEeccCCCCcEEEEeccchhhhccee-ccccceEEEE---ecCCcchhheeeec
Confidence 4456778999999999 79999999999999999999988888887 8999999998 44443 4899999
Q ss_pred CCceEEEEeccCCCccccccccceeeeccCcEEEEEechhccCCCcEEEeecCceeEeeeccchhhhcccCCCCcccccc
Q 000722 235 SDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHS 314 (1331)
Q Consensus 235 ~DgtIrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~ 314 (1331)
.||.|.+|+.....++. ++++|.+.|+.++.|| .+++-++.+.|+.+++||+-+|+.-.... + .+
T Consensus 105 dDG~i~iw~~~~W~~~~------slK~H~~~Vt~lsiHP---S~KLALsVg~D~~lr~WNLV~Gr~a~v~~----L-~~- 169 (362)
T KOG0294|consen 105 DDGHIIIWRVGSWELLK------SLKAHKGQVTDLSIHP---SGKLALSVGGDQVLRTWNLVRGRVAFVLN----L-KN- 169 (362)
T ss_pred CCCcEEEEEcCCeEEee------eecccccccceeEecC---CCceEEEEcCCceeeeehhhcCccceeec----c-CC-
Confidence 99999999998876544 4799999999999999 89999999999999999998876432211 1 11
Q ss_pred cccccCCCCCCCcee-eeeecce-eeeeecCcccc-c------------------------cccccccccCCCccccccc
Q 000722 315 VASWCHPRAPNLDIL-TCVKDSH-IWAIEHPTYSA-L------------------------TRPLCELSSLVPPQVLAHH 367 (1331)
Q Consensus 315 ~~V~svafspdg~lL-a~s~Dg~-IWdl~~~~~~~-l------------------------~~~~~~~~~~~~~~~l~~h 367 (1331)
.-..+.|+|.|..+ .++.++- ||.+.+..... . ....++..+..+...+..|
T Consensus 170 -~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH 248 (362)
T KOG0294|consen 170 -KATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENPKRILCATFLDGSELLVGGDNEWISLKDTDSDTPLTEFLAH 248 (362)
T ss_pred -cceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhccccceeeeecCCceEEEecCCceEEEeccCCCccceeeecc
Confidence 11236677777633 3333332 55544321100 0 0112223335667778888
Q ss_pred cceEEEEEEec-cCCccEeeecceeEEEEeecCCCC
Q 000722 368 KKLRVYCMVAH-SLQPHLVATGTNVGVIISEFDPRS 402 (1331)
Q Consensus 368 ~~~~I~~la~s-p~~~~lLAtGs~DG~Il~VWDlr~ 402 (1331)
.. +|..+.+- ...+.+|++.+.||.| +|||++.
T Consensus 249 ~~-RVK~i~~~~~~~~~~lvTaSSDG~I-~vWd~~~ 282 (362)
T KOG0294|consen 249 EN-RVKDIASYTNPEHEYLVTASSDGFI-KVWDIDM 282 (362)
T ss_pred hh-heeeeEEEecCCceEEEEeccCceE-EEEEccc
Confidence 88 99999843 3257899999999998 8999864
No 130
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.71 E-value=3.9e-15 Score=173.76 Aligned_cols=247 Identities=16% Similarity=0.201 Sum_probs=179.6
Q ss_pred cccccccCCCcEEEEEeecCCceeEeecCCCceeeeccccceEEeeeccCCcccchhhh--hhhhhhcccccccCCCCcc
Q 000722 3 RLKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVG--AKLEKLAEGELEHKGKPTE 80 (1331)
Q Consensus 3 ~l~~L~gHs~~V~~lafSPdg~~LaSgs~DGtV~VWD~~tg~~i~s~~~~~~~~i~~vs--pdg~~Lasgs~d~~g~~l~ 80 (1331)
.+++|+||.+.|.|++|+.||+++++|+.|..|.||+-.- -..++-.|.+.+.++. |-.+.|++++.+
T Consensus 45 llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~kl---EG~LkYSH~D~IQCMsFNP~~h~LasCsLs------- 114 (1081)
T KOG1538|consen 45 LLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKL---EGILKYSHNDAIQCMSFNPITHQLASCSLS------- 114 (1081)
T ss_pred cccccccccceEEEEEEccCCceeccCCCceeEEEecccc---cceeeeccCCeeeEeecCchHHHhhhcchh-------
Confidence 3789999999999999999999999999999999998653 2333445677777777 777778777522
Q ss_pred cccCCceeEEeeecchhhHHHHhhhccccccCCcccccccccccCCCCCCCCceEEEEEeecceeEeeeecccCC-CCCc
Q 000722 81 AMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFLDLVTMRGR-DIPK 159 (1331)
Q Consensus 81 ~l~gg~V~sVaf~DgtIrvWdl~tg~~l~~~~~~~~~~~~~~V~svafspdg~~lLasgs~d~iIvwDl~t~~~~-~i~~ 159 (1331)
..-+|....... ........+.+++|..||+ +++.|-.++.|.+.-.+++.+ .+..
T Consensus 115 ---------------dFglWS~~qK~V-------~K~kss~R~~~CsWtnDGq-ylalG~~nGTIsiRNk~gEek~~I~R 171 (1081)
T KOG1538|consen 115 ---------------DFGLWSPEQKSV-------SKHKSSSRIICCSWTNDGQ-YLALGMFNGTISIRNKNGEEKVKIER 171 (1081)
T ss_pred ---------------hccccChhhhhH-------HhhhhheeEEEeeecCCCc-EEEEeccCceEEeecCCCCcceEEeC
Confidence 233455433321 1122245678899999998 999999999986633333322 2333
Q ss_pred cccccccceeeehhhcccCCCcceEeecCCCceeeeeehhhheeehhhcCCCccchhhhhHhhhccccEEEeecCCCceE
Q 000722 160 QELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLL 239 (1331)
Q Consensus 160 ~~~h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtI 239 (1331)
..+.+.+|.+++|+|.+.-.....+++.....++.+|.+. |+.+..-. .-.-...|+. +-++|.+++.|+.|+.+
T Consensus 172 pgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r-~L~FdP~Cis---Yf~NGEy~LiGGsdk~L 246 (1081)
T KOG1538|consen 172 PGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDR-ALNFDPCCIS---YFTNGEYILLGGSDKQL 246 (1081)
T ss_pred CCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeecccc-cCCCCchhhe---eccCCcEEEEccCCCce
Confidence 4556889999999886544445678888888888888776 44443221 2334456777 56899999999999999
Q ss_pred EEEeccCCCccccccccceeeeccCcEEEEEechhccCCCcEEEeecCceeEeeeccc
Q 000722 240 ILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVS 297 (1331)
Q Consensus 240 rVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t 297 (1331)
++|.-. |-.+. ++...+.+|+.++.+| ++++++.|+.||+|..|++-.
T Consensus 247 ~~fTR~-GvrLG------Tvg~~D~WIWtV~~~P---NsQ~v~~GCqDGTiACyNl~f 294 (1081)
T KOG1538|consen 247 SLFTRD-GVRLG------TVGEQDSWIWTVQAKP---NSQYVVVGCQDGTIACYNLIF 294 (1081)
T ss_pred EEEeec-CeEEe------eccccceeEEEEEEcc---CCceEEEEEccCeeehhhhHH
Confidence 999643 33222 2455678899999999 899999999999999999864
No 131
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.71 E-value=2.2e-16 Score=172.36 Aligned_cols=250 Identities=15% Similarity=0.212 Sum_probs=173.4
Q ss_pred ccccccCCCCCCCCceEEEEEeeccee-EeeeecccCCCCCccccccccceeeehhhcccCCCcceEeecCCCceeeeee
Q 000722 119 VTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLS 197 (1331)
Q Consensus 119 ~~~~V~svafspdg~~lLasgs~d~iI-vwDl~t~~~~~i~~~~~h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWD 197 (1331)
....|.++.|+|.+. .|++++.|+.+ ++|..... +...-.|..++.+++|. +...+++|+.||.|+.+|
T Consensus 12 P~d~IS~v~f~~~~~-~LLvssWDgslrlYdv~~~~---l~~~~~~~~plL~c~F~------d~~~~~~G~~dg~vr~~D 81 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSS-DLLVSSWDGSLRLYDVPANS---LKLKFKHGAPLLDCAFA------DESTIVTGGLDGQVRRYD 81 (323)
T ss_pred ChhceeeEEEcCcCC-cEEEEeccCcEEEEeccchh---hhhheecCCceeeeecc------CCceEEEeccCceEEEEE
Confidence 356788999998887 44555567666 66877643 33345678999999993 466899999999999999
Q ss_pred hhhheeehhhcCCCccchhhhhHhhhccccEEEeecCCCceEEEEeccCCCccccccccceeeeccCcEEEEEechhccC
Q 000722 198 MISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGG 277 (1331)
Q Consensus 198 l~t~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~d 277 (1331)
+.++.....- .|...|.|+. +.+....+++||.|++|++||.+....... +. ....|.++...
T Consensus 82 ln~~~~~~ig--th~~~i~ci~---~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~------~d-~~kkVy~~~v~----- 144 (323)
T KOG1036|consen 82 LNTGNEDQIG--THDEGIRCIE---YSYEVGCVISGSWDKTIKFWDPRNKVVVGT------FD-QGKKVYCMDVS----- 144 (323)
T ss_pred ecCCcceeec--cCCCceEEEE---eeccCCeEEEcccCccEEEEeccccccccc------cc-cCceEEEEecc-----
Confidence 9987765543 6999999998 677788999999999999999997443322 22 23478888874
Q ss_pred CCcEEEeecCceeEeeeccchhhhcccCCCCcccccccccccCCCCCCCc-eeeeeecceee-e-eecCccccccccccc
Q 000722 278 SPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLD-ILTCVKDSHIW-A-IEHPTYSALTRPLCE 354 (1331)
Q Consensus 278 g~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg~-lLa~s~Dg~IW-d-l~~~~~~~l~~~~~~ 354 (1331)
++.|++|+.|..|.+||+++.....+.. -..-.-.+.|+++.|++. +++++-||+|. + ++.... ...++..
T Consensus 145 g~~LvVg~~~r~v~iyDLRn~~~~~q~r----eS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~-~~skkya- 218 (323)
T KOG1036|consen 145 GNRLVVGTSDRKVLIYDLRNLDEPFQRR----ESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEE-AQSKKYA- 218 (323)
T ss_pred CCEEEEeecCceEEEEEcccccchhhhc----cccceeEEEEEEEecCCCceEEEeecceEEEEccCCchH-Hhhhcee-
Confidence 5799999999999999999866433211 123344677888888766 78889999852 1 221111 0111110
Q ss_pred cccCCCcccccccc--ceEEEEEEeccCCccEeeecceeEEEEeecCCCCCCCC
Q 000722 355 LSSLVPPQVLAHHK--KLRVYCMVAHSLQPHLVATGTNVGVIISEFDPRSLPAV 406 (1331)
Q Consensus 355 ~~~~~~~~~l~~h~--~~~I~~la~sp~~~~lLAtGs~DG~Il~VWDlr~~p~i 406 (1331)
++ +........ -.+|++|+|||- ...+|||+.||.| .+||+..++.+
T Consensus 219 Fk---CHr~~~~~~~~~yPVNai~Fhp~-~~tfaTgGsDG~V-~~Wd~~~rKrl 267 (323)
T KOG1036|consen 219 FK---CHRLSEKDTEIIYPVNAIAFHPI-HGTFATGGSDGIV-NIWDLFNRKRL 267 (323)
T ss_pred EE---eeecccCCceEEEEeceeEeccc-cceEEecCCCceE-EEccCcchhhh
Confidence 00 000000111 137899999995 5569999999999 69998654333
No 132
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.71 E-value=4.4e-17 Score=186.49 Aligned_cols=252 Identities=15% Similarity=0.164 Sum_probs=184.4
Q ss_pred CCCcEEEEEeecCCceeEeecCCCceeeeccccceEEeeeccCCcccchhhhhhhhhhcccccccCCCCcccccCCceeE
Q 000722 10 TNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRGGSVKQ 89 (1331)
Q Consensus 10 Hs~~V~~lafSPdg~~LaSgs~DGtV~VWD~~tg~~i~s~~~~~~~~i~~vspdg~~Lasgs~d~~g~~l~~l~gg~V~s 89 (1331)
-+..|.++.|+++|..|++.+..-..+|+|-. |..+.++.-+
T Consensus 213 E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRd-G~~~~e~~KG------------------------------------- 254 (641)
T KOG0772|consen 213 ETHQINSLQYSVTGDQILVVSGSAQAKLLDRD-GFEIVEFSKG------------------------------------- 254 (641)
T ss_pred cccccceeeecCCCCeEEEEecCcceeEEccC-Cceeeeeecc-------------------------------------
Confidence 34589999999999998888888899999954 4444444312
Q ss_pred EeeecchhhHHHHhhhccccccCCcccccccccccCCCCCCCCceEEEEEeeccee-EeeeecccCC-CCCc---ccccc
Q 000722 90 VNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGR-DIPK---QELDN 164 (1331)
Q Consensus 90 Vaf~DgtIrvWdl~tg~~l~~~~~~~~~~~~~~V~svafspdg~~lLasgs~d~iI-vwDl~t~~~~-~i~~---~~~h~ 164 (1331)
|.. |-|+ ....+| ...+++.+|+|+.+..|.+|+.|+.+ +||++..+.+ .+.. ..+..
T Consensus 255 ----DQY--I~Dm----------~nTKGH-ia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~R 317 (641)
T KOG0772|consen 255 ----DQY--IRDM----------YNTKGH-IAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKR 317 (641)
T ss_pred ----chh--hhhh----------hccCCc-eeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcc
Confidence 222 2222 122344 66788999999999899999999988 7988754322 1111 12334
Q ss_pred ccceeeehhhcccCCCcceEeecCCCceeeeeehhhh--eeehhhcCCCcc--chhhhhHhhhccccEEEeecCCCceEE
Q 000722 165 KSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISW--KLVRRYTGGHKG--SISCLMTFMASSGEALLVSGGSDGLLI 240 (1331)
Q Consensus 165 ~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~--~~v~~~~~gH~~--~V~~vawf~~spdg~lLaSgs~DgtIr 240 (1331)
-.++.++| ++++++|++|+.||+|.+|+..+. +....+..+|.. .|+||. |+++|++|+|=+.|++++
T Consensus 318 v~~tsC~~-----nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~---FS~dg~~LlSRg~D~tLK 389 (641)
T KOG0772|consen 318 VPVTSCAW-----NRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSIS---FSYDGNYLLSRGFDDTLK 389 (641)
T ss_pred cCceeeec-----CCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEE---eccccchhhhccCCCcee
Confidence 57889999 789999999999999999998643 233344457887 999998 899999999999999999
Q ss_pred EEeccCCC-ccccccccceeeeccCcEEEEEechhccCCCcEEEeec------CceeEeeeccchhhhcccCCCCccccc
Q 000722 241 LWSADHGQ-DSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGA------DKTLAIWDTVSFKELRRIKPVPKLACH 313 (1331)
Q Consensus 241 VWDl~tg~-~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~------Dg~IrIWDl~t~~~l~~~~~~~~l~~H 313 (1331)
+||++..+ ++..+.-+. ....-+.++|+| +.++|++|.. .|++.+||..+...++++ ...
T Consensus 390 vWDLrq~kkpL~~~tgL~----t~~~~tdc~FSP---d~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki------~i~ 456 (641)
T KOG0772|consen 390 VWDLRQFKKPLNVRTGLP----TPFPGTDCCFSP---DDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKI------DIS 456 (641)
T ss_pred eeeccccccchhhhcCCC----ccCCCCccccCC---CceEEEecccccCCCCCceEEEEeccceeeEEEe------cCC
Confidence 99998754 222211111 122356789999 8889999864 578999998888777663 334
Q ss_pred ccccccCCCCCC-Cceeeeeeccee
Q 000722 314 SVASWCHPRAPN-LDILTCVKDSHI 337 (1331)
Q Consensus 314 ~~~V~svafspd-g~lLa~s~Dg~I 337 (1331)
+..|..+.|||. +++++++.||++
T Consensus 457 ~aSvv~~~WhpkLNQi~~gsgdG~~ 481 (641)
T KOG0772|consen 457 TASVVRCLWHPKLNQIFAGSGDGTA 481 (641)
T ss_pred CceEEEEeecchhhheeeecCCCce
Confidence 667778999998 457788889974
No 133
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.70 E-value=3.1e-16 Score=178.51 Aligned_cols=239 Identities=13% Similarity=0.161 Sum_probs=180.3
Q ss_pred cccccCCCCCCCCceEEEEEeecceeEeeeecccCC-CCCccc--cccccceeeehhhcccCCCcceEeecCCCceeeee
Q 000722 120 TSGFASPPPSTKGRHFLVICCVNKAIFLDLVTMRGR-DIPKQE--LDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVL 196 (1331)
Q Consensus 120 ~~~V~svafspdg~~lLasgs~d~iIvwDl~t~~~~-~i~~~~--~h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlW 196 (1331)
...|..+..+...+ .+.+|+.+++-+||+.....+ .+..+. ....+|+++.. .+||+.|++|+.-.++.||
T Consensus 419 GEvVcAvtIS~~tr-hVyTgGkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL-----~pdgrtLivGGeastlsiW 492 (705)
T KOG0639|consen 419 GEVVCAVTISNPTR-HVYTGGKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKL-----LPDGRTLIVGGEASTLSIW 492 (705)
T ss_pred CcEEEEEEecCCcc-eeEecCCCeEEEeeccCCCCCCccccccccCcccceeeeEe-----cCCCceEEeccccceeeee
Confidence 55666777777665 788999999999998643221 222222 23678998888 6799999999999999999
Q ss_pred ehhhheeehhhc-CCCccchhhhhHhhhccccEEEeecCCCceEEEEeccCCCccccccccceeeeccCcEEEEEechhc
Q 000722 197 SMISWKLVRRYT-GGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVM 275 (1331)
Q Consensus 197 Dl~t~~~v~~~~-~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~ 275 (1331)
|+.......... ....-....++ .+||.++.++++.||.|.|||+.+...++. |+||.+++.||.+++
T Consensus 493 DLAapTprikaeltssapaCyALa---~spDakvcFsccsdGnI~vwDLhnq~~Vrq------fqGhtDGascIdis~-- 561 (705)
T KOG0639|consen 493 DLAAPTPRIKAELTSSAPACYALA---ISPDAKVCFSCCSDGNIAVWDLHNQTLVRQ------FQGHTDGASCIDISK-- 561 (705)
T ss_pred eccCCCcchhhhcCCcchhhhhhh---cCCccceeeeeccCCcEEEEEcccceeeec------ccCCCCCceeEEecC--
Confidence 998644322221 02222333444 899999999999999999999998776554 799999999999998
Q ss_pred cCCCcEEEeecCceeEeeeccchhhhcccCCCCcccccccccccCCCCCCCceeeeeec-ceeeeeecCccccccccccc
Q 000722 276 GGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDILTCVKD-SHIWAIEHPTYSALTRPLCE 354 (1331)
Q Consensus 276 ~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg~lLa~s~D-g~IWdl~~~~~~~l~~~~~~ 354 (1331)
+|..|-||+-|.+||.||+++++.++. ......|.++-.+|++..|+.|.. +.+|-+.+..
T Consensus 562 -dGtklWTGGlDntvRcWDlregrqlqq-------hdF~SQIfSLg~cP~~dWlavGMens~vevlh~sk---------- 623 (705)
T KOG0639|consen 562 -DGTKLWTGGLDNTVRCWDLREGRQLQQ-------HDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSK---------- 623 (705)
T ss_pred -CCceeecCCCccceeehhhhhhhhhhh-------hhhhhhheecccCCCccceeeecccCcEEEEecCC----------
Confidence 899999999999999999999987665 334567889999999998876654 4688877531
Q ss_pred cccCCCccccccccceEEEEEEeccCCccEeeecceeEEEEeecCC
Q 000722 355 LSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDP 400 (1331)
Q Consensus 355 ~~~~~~~~~l~~h~~~~I~~la~sp~~~~lLAtGs~DG~Il~VWDl 400 (1331)
.....+..|.. -|.++.|.+ .+..+++.+.|+.+ ..|..
T Consensus 624 ----p~kyqlhlheS-cVLSlKFa~-cGkwfvStGkDnlL-nawrt 662 (705)
T KOG0639|consen 624 ----PEKYQLHLHES-CVLSLKFAY-CGKWFVSTGKDNLL-NAWRT 662 (705)
T ss_pred ----ccceeeccccc-EEEEEEecc-cCceeeecCchhhh-hhccC
Confidence 11223445666 899999999 57778888888886 67853
No 134
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.70 E-value=1.1e-16 Score=177.80 Aligned_cols=268 Identities=19% Similarity=0.229 Sum_probs=178.5
Q ss_pred cccCCCcEEEEEeecCCc--eeEeecCCCceeeeccccceEEeeeccCCcccchhhhhhhhhhcccccccCCCCcccccC
Q 000722 7 FRPTNDKIVKIQLHPTHP--WLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRG 84 (1331)
Q Consensus 7 L~gHs~~V~~lafSPdg~--~LaSgs~DGtV~VWD~~tg~~i~s~~~~~~~~i~~vspdg~~Lasgs~d~~g~~l~~l~g 84 (1331)
.-+|.+.|+.+.-++-++ +.++=+..|.|+|||+.. .++.+.... +... +...+
T Consensus 147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~--~l~~l~~~~-------------~~~~--~s~~~------- 202 (440)
T KOG0302|consen 147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAP--HLNALSEPG-------------LEVK--DSEFR------- 202 (440)
T ss_pred ccccccccceeeecccCCcceeeeecccCcEEEEEchh--hhhhhcCcc-------------cccc--ccccC-------
Confidence 346888888888887764 566667889999999753 222222110 0000 00000
Q ss_pred CceeEEeeecchhhHHHHhhhccccccCCcccccccccccCCCCCC--CCceEEEEEeecceeEeeeecccCC-CCCccc
Q 000722 85 GSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPST--KGRHFLVICCVNKAIFLDLVTMRGR-DIPKQE 161 (1331)
Q Consensus 85 g~V~sVaf~DgtIrvWdl~tg~~l~~~~~~~~~~~~~~V~svafsp--dg~~lLasgs~d~iIvwDl~t~~~~-~i~~~~ 161 (1331)
+ ..+..+| ...=+.++||| .|. ++..-+..++.+|...++... .-..+.
T Consensus 203 -P-------------------------l~t~~gh-k~EGy~LdWSp~~~g~-LlsGDc~~~I~lw~~~~g~W~vd~~Pf~ 254 (440)
T KOG0302|consen 203 -P-------------------------LFTFNGH-KGEGYGLDWSPIKTGR-LLSGDCVKGIHLWEPSTGSWKVDQRPFT 254 (440)
T ss_pred -c-------------------------eEEeccc-Cccceeeecccccccc-cccCccccceEeeeeccCceeecCcccc
Confidence 1 1122222 23335688888 343 444445666778877665432 223356
Q ss_pred cccccceeeehhhcccCCCcceEeecCCCceeeeeehhhhe-eehhhcCCCccchhhhhHhhhccccEEEeecCCCceEE
Q 000722 162 LDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWK-LVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLI 240 (1331)
Q Consensus 162 ~h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~~-~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIr 240 (1331)
+|...|-.++|+|. ....|++||.||+|+|||++.+. .-..+...|.+.|+.|.| +....+|++|+.||+++
T Consensus 255 gH~~SVEDLqWSpt----E~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISW---nr~~~lLasG~DdGt~~ 327 (440)
T KOG0302|consen 255 GHTKSVEDLQWSPT----EDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISW---NRREPLLASGGDDGTLS 327 (440)
T ss_pred ccccchhhhccCCc----cCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEc---cCCcceeeecCCCceEE
Confidence 69999999999652 45689999999999999999872 222223489999999985 55556999999999999
Q ss_pred EEeccCCCccccccccceeeeccCcEEEEEechhccCCCcEEEeecCceeEeeeccchhh-----------hcccCCCCc
Q 000722 241 LWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKE-----------LRRIKPVPK 309 (1331)
Q Consensus 241 VWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~-----------l~~~~~~~~ 309 (1331)
|||+++-+.- .|+..++-|..+|+++.|+|. +...|+++|.|.+|.|||+..-.- ++.+ |.+-
T Consensus 328 iwDLR~~~~~---~pVA~fk~Hk~pItsieW~p~--e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dl-PpQL 401 (440)
T KOG0302|consen 328 IWDLRQFKSG---QPVATFKYHKAPITSIEWHPH--EDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDL-PPQL 401 (440)
T ss_pred EEEhhhccCC---CcceeEEeccCCeeEEEeccc--cCceEEeccCCCcEEEEEeeccCChhhhccccccchhcC-Ccee
Confidence 9999876543 356678999999999999994 678899999999999999964221 1111 1112
Q ss_pred ccccc--cccccCCCCCC--Cceeeeeecce-eee
Q 000722 310 LACHS--VASWCHPRAPN--LDILTCVKDSH-IWA 339 (1331)
Q Consensus 310 l~~H~--~~V~svafspd--g~lLa~s~Dg~-IWd 339 (1331)
+..|. ..+.-+.|+++ |.+++.+.||- ||.
T Consensus 402 LFVHqGQke~KevhWH~QiPG~lvsTa~dGfnVfk 436 (440)
T KOG0302|consen 402 LFVHQGQKEVKEVHWHRQIPGLLVSTAIDGFNVFK 436 (440)
T ss_pred EEEecchhHhhhheeccCCCCeEEEecccceeEEE
Confidence 33453 35668889987 44667788873 654
No 135
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=3.2e-16 Score=190.29 Aligned_cols=267 Identities=12% Similarity=0.149 Sum_probs=196.0
Q ss_pred ccCCCcEEEEEeecCCceeEeecCCCceeeeccccce-EEeeeccCCcccchhhhhhhhhhcccccccCCCCcccccCCc
Q 000722 8 RPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQ-VIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRGGS 86 (1331)
Q Consensus 8 ~gHs~~V~~lafSPdg~~LaSgs~DGtV~VWD~~tg~-~i~s~~~~~~~~i~~vspdg~~Lasgs~d~~g~~l~~l~gg~ 86 (1331)
.+|+..-+.|+|.|+|.+|++++.||.|++|+...-. .-.++.. .
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~-------------------------------~--- 55 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDI-------------------------------S--- 55 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhc-------------------------------c---
Confidence 5899999999999999999999999999999965321 0000000 0
Q ss_pred eeEEeeecchhhHHHHhhhccccccCCcccccccccccCCCCCCCCceEEEEEeeccee-EeeeecccCCCCCccccccc
Q 000722 87 VKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQELDNK 165 (1331)
Q Consensus 87 V~sVaf~DgtIrvWdl~tg~~l~~~~~~~~~~~~~~V~svafspdg~~lLasgs~d~iI-vwDl~t~~~~~i~~~~~h~~ 165 (1331)
...|.+++. ++. .|++|+.++.+ ++....+.... .+..-.-
T Consensus 56 ---------------------------------g~~v~~ia~--~s~-~f~~~s~~~tv~~y~fps~~~~~--iL~Rftl 97 (933)
T KOG1274|consen 56 ---------------------------------GELVSSIAC--YSN-HFLTGSEQNTVLRYKFPSGEEDT--ILARFTL 97 (933)
T ss_pred ---------------------------------CceeEEEee--ccc-ceEEeeccceEEEeeCCCCCccc--eeeeeec
Confidence 112222222 233 56777777766 77666554332 2333356
Q ss_pred cceeeehhhcccCCCcceEeecCCCceeeeeehhhheeehhhcCCCccchhhhhHhhhccccEEEeecCCCceEEEEecc
Q 000722 166 SLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSAD 245 (1331)
Q Consensus 166 ~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrVWDl~ 245 (1331)
++++++| +.+|.+++.||+|-.|++.++.+....+.+. +|..+|.++. ++|++++|++.+.||.|++||+.
T Consensus 98 p~r~~~v-----~g~g~~iaagsdD~~vK~~~~~D~s~~~~lr-gh~apVl~l~---~~p~~~fLAvss~dG~v~iw~~~ 168 (933)
T KOG1274|consen 98 PIRDLAV-----SGSGKMIAAGSDDTAVKLLNLDDSSQEKVLR-GHDAPVLQLS---YDPKGNFLAVSSCDGKVQIWDLQ 168 (933)
T ss_pred cceEEEE-----ecCCcEEEeecCceeEEEEeccccchheeec-ccCCceeeee---EcCCCCEEEEEecCceEEEEEcc
Confidence 8899999 7899999999999999999999888888887 9999999998 89999999999999999999999
Q ss_pred CCCccccccccceeeec--cCcEEEEEechhccCCCcEEEeecCceeEeeeccchhhhcccCCCCcccccccccccCCCC
Q 000722 246 HGQDSRELVPKLSLKAH--DGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRA 323 (1331)
Q Consensus 246 tg~~~~~~~~~~~l~gH--~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafs 323 (1331)
++.+...+.....-.+. ...++.++|+| ++..++..+.|+.|++|+..++.....+. ...|...++++.|+
T Consensus 169 ~~~~~~tl~~v~k~n~~~~s~i~~~~aW~P---k~g~la~~~~d~~Vkvy~r~~we~~f~Lr----~~~~ss~~~~~~ws 241 (933)
T KOG1274|consen 169 DGILSKTLTGVDKDNEFILSRICTRLAWHP---KGGTLAVPPVDNTVKVYSRKGWELQFKLR----DKLSSSKFSDLQWS 241 (933)
T ss_pred cchhhhhcccCCccccccccceeeeeeecC---CCCeEEeeccCCeEEEEccCCceeheeec----ccccccceEEEEEc
Confidence 98776554322211111 34577899999 77788888899999999999888765543 23444558899999
Q ss_pred CCCceeee-eecce--eeeeecCccccccccccccccCCCccccccccceEEEEEEeccCCc
Q 000722 324 PNLDILTC-VKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQP 382 (1331)
Q Consensus 324 pdg~lLa~-s~Dg~--IWdl~~~~~~~l~~~~~~~~~~~~~~~l~~h~~~~I~~la~sp~~~ 382 (1331)
|+|++|++ +.||. |||+.+.. +......|.|++|.|+.+
T Consensus 242 PnG~YiAAs~~~g~I~vWnv~t~~--------------------~~~~~~~Vc~~aw~p~~n 283 (933)
T KOG1274|consen 242 PNGKYIAASTLDGQILVWNVDTHE--------------------RHEFKRAVCCEAWKPNAN 283 (933)
T ss_pred CCCcEEeeeccCCcEEEEecccch--------------------hccccceeEEEecCCCCC
Confidence 99999965 56775 89998521 011122799999999643
No 136
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.69 E-value=1.1e-16 Score=177.00 Aligned_cols=238 Identities=10% Similarity=0.111 Sum_probs=184.0
Q ss_pred ccccccccccCCCCCCCCceEEEEEeeccee-EeeeecccCCCCCccccccccceeeehhhcccCCCcceEeecCCCcee
Q 000722 115 AVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVI 193 (1331)
Q Consensus 115 ~~~~~~~~V~svafspdg~~lLasgs~d~iI-vwDl~t~~~~~i~~~~~h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtI 193 (1331)
+.+| .+.|.+++-+|..-..+++|+.|+.+ +||+.+.. ++..+..|.+.|+.+++ +...++++++|.+|
T Consensus 62 L~gH-rdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~--~~~~f~AH~G~V~Gi~v-------~~~~~~tvgdDKtv 131 (433)
T KOG0268|consen 62 LDGH-RDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRE--CIRTFKAHEGLVRGICV-------TQTSFFTVGDDKTV 131 (433)
T ss_pred cccc-ccccchhhcCcchhhhhhccccCceEEEEehhhhh--hhheeecccCceeeEEe-------cccceEEecCCcce
Confidence 3444 88899999999885588999988887 89998744 56778999999999999 34778999999999
Q ss_pred eeeehhhheeehhhcCCCccchhhhhHhhhccccEEEeecCCCceEEEEeccCCCccccccccceeeeccCcEEEEEech
Q 000722 194 RVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSR 273 (1331)
Q Consensus 194 rlWDl~t~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp 273 (1331)
+.|-+.. ..++++. ....+..+. .+..++.++|||.+ |.|||......+ ..+.--.+.|.++.|+|
T Consensus 132 K~wk~~~-~p~~til--g~s~~~gId---h~~~~~~FaTcGe~--i~IWD~~R~~Pv------~smswG~Dti~svkfNp 197 (433)
T KOG0268|consen 132 KQWKIDG-PPLHTIL--GKSVYLGID---HHRKNSVFATCGEQ--IDIWDEQRDNPV------SSMSWGADSISSVKFNP 197 (433)
T ss_pred eeeeccC-Ccceeee--ccccccccc---cccccccccccCce--eeecccccCCcc------ceeecCCCceeEEecCC
Confidence 9998774 4555553 345566665 55667889998864 889999876544 34566667799999999
Q ss_pred hccCCCcEEEeecCceeEeeeccchhhhcccCCCCcccccccccccCCCCCCCc-eeeeeeccee--eeeecCccccccc
Q 000722 274 VMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLD-ILTCVKDSHI--WAIEHPTYSALTR 350 (1331)
Q Consensus 274 ~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg~-lLa~s~Dg~I--Wdl~~~~~~~l~~ 350 (1331)
. ...+|++|+.|+.|.+||++.+.+++... -...-..++|+|++. +.++.+|..+ +|++..
T Consensus 198 v--ETsILas~~sDrsIvLyD~R~~~Pl~KVi-------~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l------- 261 (433)
T KOG0268|consen 198 V--ETSILASCASDRSIVLYDLRQASPLKKVI-------LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNL------- 261 (433)
T ss_pred C--cchheeeeccCCceEEEecccCCccceee-------eeccccceecCccccceeeccccccceehhhhhh-------
Confidence 5 66788999999999999999999877632 223345789999766 4477788875 455431
Q ss_pred cccccccCCCccccccccceEEEEEEeccCCccEeeecceeEEEEeecCCCC
Q 000722 351 PLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPRS 402 (1331)
Q Consensus 351 ~~~~~~~~~~~~~l~~h~~~~I~~la~sp~~~~lLAtGs~DG~Il~VWDlr~ 402 (1331)
..++....+|.. .|..++|||. |.-+++|+.|..| |||..++
T Consensus 262 -------~~p~~v~~dhvs-AV~dVdfspt-G~EfvsgsyDksI-RIf~~~~ 303 (433)
T KOG0268|consen 262 -------SRPLNVHKDHVS-AVMDVDFSPT-GQEFVSGSYDKSI-RIFPVNH 303 (433)
T ss_pred -------cccchhhcccce-eEEEeccCCC-cchhccccccceE-EEeecCC
Confidence 245667778888 8999999996 6669999999998 8998653
No 137
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.69 E-value=1.9e-16 Score=175.95 Aligned_cols=246 Identities=22% Similarity=0.274 Sum_probs=175.9
Q ss_pred EEEEEeeccee-Eeeeec--------------ccCCCCCccccccccceeeehhhcccCCCcceEeecCCCceeeeeehh
Q 000722 135 FLVICCVNKAI-FLDLVT--------------MRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMI 199 (1331)
Q Consensus 135 lLasgs~d~iI-vwDl~t--------------~~~~~i~~~~~h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~ 199 (1331)
+.++-++.+-+ +||+.. .+.+.+.++.+|...=+.++|+|. ..| .+++|..-+.|++|...
T Consensus 167 ~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~---~~g-~LlsGDc~~~I~lw~~~ 242 (440)
T KOG0302|consen 167 LCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPI---KTG-RLLSGDCVKGIHLWEPS 242 (440)
T ss_pred eeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccc---ccc-ccccCccccceEeeeec
Confidence 55566666655 887532 123355667788888899999652 233 58889888999999998
Q ss_pred hheee---hhhcCCCccchhhhhHhhhccccEEEeecCCCceEEEEeccCCCccccccccceeeeccCcEEEEEechhcc
Q 000722 200 SWKLV---RRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMG 276 (1331)
Q Consensus 200 t~~~v---~~~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~ 276 (1331)
++... ..|. +|+..|-.++| .+.....|+|||.||+|+|||++.+... +....+.|.+.|+-+.|+.
T Consensus 243 ~g~W~vd~~Pf~-gH~~SVEDLqW--SptE~~vfaScS~DgsIrIWDiRs~~~~----~~~~~kAh~sDVNVISWnr--- 312 (440)
T KOG0302|consen 243 TGSWKVDQRPFT-GHTKSVEDLQW--SPTEDGVFASCSCDGSIRIWDIRSGPKK----AAVSTKAHNSDVNVISWNR--- 312 (440)
T ss_pred cCceeecCcccc-ccccchhhhcc--CCccCceEEeeecCceEEEEEecCCCcc----ceeEeeccCCceeeEEccC---
Confidence 76432 3444 89999999997 3445679999999999999999988432 1223489999999999998
Q ss_pred CCCcEEEeecCceeEeeeccchhhhcccCCCCcccccccccccCCCCCCCc--eeeeeecce--eeeeecCcc--ccccc
Q 000722 277 GSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLD--ILTCVKDSH--IWAIEHPTY--SALTR 350 (1331)
Q Consensus 277 dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg~--lLa~s~Dg~--IWdl~~~~~--~~l~~ 350 (1331)
...+|++|++||+++|||++..+.- .++..+..|..+|+++.|+|... ++++|.|.. |||+....- ..-..
T Consensus 313 ~~~lLasG~DdGt~~iwDLR~~~~~---~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~ 389 (440)
T KOG0302|consen 313 REPLLASGGDDGTLSIWDLRQFKSG---QPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQE 389 (440)
T ss_pred CcceeeecCCCceEEEEEhhhccCC---CcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccc
Confidence 6679999999999999999875533 45666899999999999999754 557778874 899974311 00011
Q ss_pred cccccccCCCccccccccceEEEEEEeccCCccEeeecceeEEEEeecC
Q 000722 351 PLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFD 399 (1331)
Q Consensus 351 ~~~~~~~~~~~~~l~~h~~~~I~~la~sp~~~~lLAtGs~DG~Il~VWD 399 (1331)
....+....+...|-..+...+..+.||++-+-++++.+.||.- ||.
T Consensus 390 a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGfn--Vfk 436 (440)
T KOG0302|consen 390 AAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGFN--VFK 436 (440)
T ss_pred cccchhcCCceeEEEecchhHhhhheeccCCCCeEEEeccccee--EEE
Confidence 11112222222223222433688999999888889999999984 664
No 138
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.68 E-value=8e-16 Score=175.92 Aligned_cols=276 Identities=12% Similarity=0.070 Sum_probs=178.5
Q ss_pred CceeEeecCCCceeeeccccceEEeeeccCCcccchhhhhhhhhhcccccccCCCCcccccCCceeEEeeecchhhHHHH
Q 000722 23 HPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRGGSVKQVNFYDDDVRFWQL 102 (1331)
Q Consensus 23 g~~LaSgs~DGtV~VWD~~tg~~i~s~~~~~~~~i~~vspdg~~Lasgs~d~~g~~l~~l~gg~V~sVaf~DgtIrvWdl 102 (1331)
+..+++++.|+.|++||..+++++..+..+.
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~------------------------------------------------- 31 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQ------------------------------------------------- 31 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEECCC-------------------------------------------------
Confidence 3578899999999999999888777665221
Q ss_pred hhhccccccCCcccccccccccCCCCCCCCceEEEEEeeccee-EeeeecccCCCCCccccccccceeeehhhcccCCCc
Q 000722 103 WRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDV 181 (1331)
Q Consensus 103 ~tg~~l~~~~~~~~~~~~~~V~svafspdg~~lLasgs~d~iI-vwDl~t~~~~~i~~~~~h~~~V~~Vaf~P~s~Spdg 181 (1331)
.+.++.|+|+++.++++++.++.+ +||..+++.. ..+..+ ..+..+.| +|++
T Consensus 32 -------------------~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~--~~~~~~-~~~~~~~~-----~~~g 84 (300)
T TIGR03866 32 -------------------RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVI--GTLPSG-PDPELFAL-----HPNG 84 (300)
T ss_pred -------------------CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEE--EeccCC-CCccEEEE-----CCCC
Confidence 123467899998555666665555 8898875432 122222 23567888 6788
Q ss_pred ceEe-ecCCCceeeeeehhhheeehhhcCCCccchhhhhHhhhccccEEEeecCCCc-eEEEEeccCCCcccccccccee
Q 000722 182 PLVA-FGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDG-LLILWSADHGQDSRELVPKLSL 259 (1331)
Q Consensus 182 ~~La-sGs~DGtIrlWDl~t~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~Dg-tIrVWDl~tg~~~~~~~~~~~l 259 (1331)
+.++ +++.|+.|++||+.+.+.+..+. +...+.+++ ++|++.++++++.++ .+.+||..+++.... +
T Consensus 85 ~~l~~~~~~~~~l~~~d~~~~~~~~~~~--~~~~~~~~~---~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~------~ 153 (300)
T TIGR03866 85 KILYIANEDDNLVTVIDIETRKVLAEIP--VGVEPEGMA---VSPDGKIVVNTSETTNMAHFIDTKTYEIVDN------V 153 (300)
T ss_pred CEEEEEcCCCCeEEEEECCCCeEEeEee--CCCCcceEE---ECCCCCEEEEEecCCCeEEEEeCCCCeEEEE------E
Confidence 8665 45678999999999887776664 233456666 789999999888765 567789887654322 1
Q ss_pred eeccCcEEEEEechhccCCCcEE-EeecCceeEeeeccchhhhcccCCCC-cccccccccccCCCCCCCcee--eeeecc
Q 000722 260 KAHDGGVVAVELSRVMGGSPQLI-TIGADKTLAIWDTVSFKELRRIKPVP-KLACHSVASWCHPRAPNLDIL--TCVKDS 335 (1331)
Q Consensus 260 ~gH~~~V~svafsp~~~dg~~La-Sgs~Dg~IrIWDl~t~~~l~~~~~~~-~l~~H~~~V~svafspdg~lL--a~s~Dg 335 (1331)
.....+.++.|+| ++.+|+ ++..++.|++||+.+++.+.++.... ...........+.|+|+++++ +.+.++
T Consensus 154 -~~~~~~~~~~~s~---dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~ 229 (300)
T TIGR03866 154 -LVDQRPRFAEFTA---DGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPAN 229 (300)
T ss_pred -EcCCCccEEEECC---CCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCC
Confidence 1223467899998 777775 55569999999999987765532110 000001122357789999853 334444
Q ss_pred e--eeeeecCccccccccccccccCCCccccccccceEEEEEEeccCCccEeeecceeEEEEeecCCCCCCCCC
Q 000722 336 H--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPRSLPAVA 407 (1331)
Q Consensus 336 ~--IWdl~~~~~~~l~~~~~~~~~~~~~~~l~~h~~~~I~~la~sp~~~~lLAtGs~DG~Il~VWDlr~~p~i~ 407 (1331)
+ +||+.+... ...+ .+.. .+++++|+|++..++++...+|.| ++||++....+.
T Consensus 230 ~i~v~d~~~~~~---------------~~~~-~~~~-~~~~~~~~~~g~~l~~~~~~~~~i-~v~d~~~~~~~~ 285 (300)
T TIGR03866 230 RVAVVDAKTYEV---------------LDYL-LVGQ-RVWQLAFTPDEKYLLTTNGVSNDV-SVIDVAALKVIK 285 (300)
T ss_pred eEEEEECCCCcE---------------EEEE-EeCC-CcceEEECCCCCEEEEEcCCCCeE-EEEECCCCcEEE
Confidence 3 788764321 1111 1223 588999999644444444678887 799988654433
No 139
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.68 E-value=3e-16 Score=169.35 Aligned_cols=311 Identities=17% Similarity=0.239 Sum_probs=204.3
Q ss_pred ccccCCCcEEEEEeecC-CceeEeecCCCceeeeccccceEEeeeccCCcccchhhhhhhhhhcccccccCCCCcccccC
Q 000722 6 AFRPTNDKIVKIQLHPT-HPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRG 84 (1331)
Q Consensus 6 ~L~gHs~~V~~lafSPd-g~~LaSgs~DGtV~VWD~~tg~~i~s~~~~~~~~i~~vspdg~~Lasgs~d~~g~~l~~l~g 84 (1331)
.-+.|.+.|+++...+. |+++++|+.||.|.|||++.-.. .+... |..
T Consensus 38 ~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~---~e~s~-------------li~--------------- 86 (397)
T KOG4283|consen 38 FVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATD---YEASG-------------LIA--------------- 86 (397)
T ss_pred eeccCCCccceeeeccccceEEeecCCCccEEEEEeccccc---hhhcc-------------cee---------------
Confidence 34679999999999985 78999999999999999874221 00000 000
Q ss_pred CceeEEeeecchhhHHHHhhhccccccCCcccccccccccCCCCCCCCceEEEEEeeccee-EeeeecccCCCCCccccc
Q 000722 85 GSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQELD 163 (1331)
Q Consensus 85 g~V~sVaf~DgtIrvWdl~tg~~l~~~~~~~~~~~~~~V~svafspdg~~lLasgs~d~iI-vwDl~t~~~~~i~~~~~h 163 (1331)
...|+ ........|.-.|.++.|-|-..-+|.+++.|+.+ +||.+|.+.... +. -
T Consensus 87 -------------------k~~c~--v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~--F~-m 142 (397)
T KOG4283|consen 87 -------------------KHKCI--VAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVD--FK-M 142 (397)
T ss_pred -------------------heeee--ccccCCccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEE--ee-c
Confidence 00010 00111222255677777877666699999999988 999998543221 22 2
Q ss_pred cccceeeehhhcccCCCcceEeecCCCceeeeeehhhheeehhhcCCCccchhhhhHhhhccccEEEeecCCCceEEEEe
Q 000722 164 NKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWS 243 (1331)
Q Consensus 164 ~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrVWD 243 (1331)
.+.|.+-+++|-. -.-.+|++|..|-.|++-|+.+|.+...+. ||...|.++.| .+...-.|++|+.||.|++||
T Consensus 143 e~~VYshamSp~a--~sHcLiA~gtr~~~VrLCDi~SGs~sH~Ls-GHr~~vlaV~W--sp~~e~vLatgsaDg~irlWD 217 (397)
T KOG4283|consen 143 EGKVYSHAMSPMA--MSHCLIAAGTRDVQVRLCDIASGSFSHTLS-GHRDGVLAVEW--SPSSEWVLATGSADGAIRLWD 217 (397)
T ss_pred CceeehhhcChhh--hcceEEEEecCCCcEEEEeccCCcceeeec-cccCceEEEEe--ccCceeEEEecCCCceEEEEE
Confidence 5677888886642 234588999999999999999999999987 99999999997 355566789999999999999
Q ss_pred ccCC-Ccccc-------cccc-ceeeeccCcEEEEEechhccCCCcEEEeecCceeEeeeccchhhhc-ccCCCCccccc
Q 000722 244 ADHG-QDSRE-------LVPK-LSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELR-RIKPVPKLACH 313 (1331)
Q Consensus 244 l~tg-~~~~~-------~~~~-~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~-~~~~~~~l~~H 313 (1331)
++.. .+... ..|. .+-..|.+.|++++|.. ++.++++++.|..+++|+..+|+... .+.++ .|
T Consensus 218 iRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tS---d~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~----~~ 290 (397)
T KOG4283|consen 218 IRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTS---DARYLASCGTDDRIRVWNMESGRNTLREFGPI----IH 290 (397)
T ss_pred eecccceeEEeecccCccCccccccccccceeeeeeecc---cchhhhhccCccceEEeecccCcccccccccc----cc
Confidence 9864 12111 1111 12457899999999998 89999999999999999999886422 21111 11
Q ss_pred ccccccCCCC---CCCcee-eeeecceeeeeecCccccccccccccccCCCccccccccceEEEEEEeccCCccEeeecc
Q 000722 314 SVASWCHPRA---PNLDIL-TCVKDSHIWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGT 389 (1331)
Q Consensus 314 ~~~V~svafs---pdg~lL-a~s~Dg~IWdl~~~~~~~l~~~~~~~~~~~~~~~l~~h~~~~I~~la~sp~~~~lLAtGs 389 (1331)
...+ ...++ -+...+ ---.++.+.-+.-. ....+..+..|.+ +|.|.++.|+ =....+|.
T Consensus 291 n~~~-~~~~~~~~~~s~vfv~~p~~~~lall~~~-------------sgs~ir~l~~h~k-~i~c~~~~~~-fq~~~tg~ 354 (397)
T KOG4283|consen 291 NQTT-SFAVHIQSMDSDVFVLFPNDGSLALLNLL-------------EGSFVRRLSTHLK-RINCAAYRPD-FEQCFTGD 354 (397)
T ss_pred cccc-cceEEEeecccceEEEEecCCeEEEEEcc-------------CceEEEeeecccc-eeeEEeecCc-hhhhhccc
Confidence 1111 11111 111111 11122322222211 1122445667766 8999999994 55689999
Q ss_pred eeEEEEeecCC
Q 000722 390 NVGVIISEFDP 400 (1331)
Q Consensus 390 ~DG~Il~VWDl 400 (1331)
.|+.| ..|-.
T Consensus 355 ~d~ni-~~w~p 364 (397)
T KOG4283|consen 355 MNGNI-YMWSP 364 (397)
T ss_pred cCCcc-ccccc
Confidence 99998 68864
No 140
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=1.6e-16 Score=181.13 Aligned_cols=229 Identities=14% Similarity=0.148 Sum_probs=180.7
Q ss_pred CCcEEEEEeecCCceeEeecCCCceeeeccccceEEeeeccCCcccchhhhhhhhhhcccccccCCCCcccccCCceeEE
Q 000722 11 NDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRGGSVKQV 90 (1331)
Q Consensus 11 s~~V~~lafSPdg~~LaSgs~DGtV~VWD~~tg~~i~s~~~~~~~~i~~vspdg~~Lasgs~d~~g~~l~~l~gg~V~sV 90 (1331)
.+.|.|++-+|+|.||+.|+..|.|.+|.+.+|.++..+..|
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aH-------------------------------------- 122 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAH-------------------------------------- 122 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhh--------------------------------------
Confidence 367999999999999999999999999999998877766522
Q ss_pred eeecchhhHHHHhhhccccccCCcccccccccccCCCCCCCCceEEEEEeeccee-Eeeeec-------ccCCCCCcccc
Q 000722 91 NFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVT-------MRGRDIPKQEL 162 (1331)
Q Consensus 91 af~DgtIrvWdl~tg~~l~~~~~~~~~~~~~~V~svafspdg~~lLasgs~d~iI-vwDl~t-------~~~~~i~~~~~ 162 (1331)
...|+++.|+-||. .|++|+.|+.+ +|++.. .....+..+..
T Consensus 123 -----------------------------YQ~ITcL~fs~dgs-~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~ 172 (476)
T KOG0646|consen 123 -----------------------------YQSITCLKFSDDGS-HIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSD 172 (476)
T ss_pred -----------------------------ccceeEEEEeCCCc-EEEecCCCccEEEEEEEeecccccCCCccceeeecc
Confidence 33467788899998 88888888876 785432 22334455677
Q ss_pred ccccceeeehhhcccCCCcceEeecCCCceeeeeehhhheeehhhcCCCccchhhhhHhhhccccEEEeecCCCceEEEE
Q 000722 163 DNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILW 242 (1331)
Q Consensus 163 h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrVW 242 (1331)
|.-.|+.+...+ .+...+++++|.|.++++||+..+.++.++. ....++++. ..|.+..+..|+.+|.|.+.
T Consensus 173 HtlsITDl~ig~---Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~--fp~si~av~---lDpae~~~yiGt~~G~I~~~ 244 (476)
T KOG0646|consen 173 HTLSITDLQIGS---GGTNARLYTASEDRTIKLWDLSLGVLLLTIT--FPSSIKAVA---LDPAERVVYIGTEEGKIFQN 244 (476)
T ss_pred CcceeEEEEecC---CCccceEEEecCCceEEEEEeccceeeEEEe--cCCcceeEE---EcccccEEEecCCcceEEee
Confidence 888999988843 3345789999999999999999999988874 667888887 89999999999999999998
Q ss_pred eccCCC--cc--------ccccccceeeeccC--cEEEEEechhccCCCcEEEeecCceeEeeeccchhhhcccCCCCcc
Q 000722 243 SADHGQ--DS--------RELVPKLSLKAHDG--GVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKL 310 (1331)
Q Consensus 243 Dl~tg~--~~--------~~~~~~~~l~gH~~--~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l 310 (1331)
++.... .. ..-.....+.||.+ .|+|++++- |+.+|++|+.||.|+|||+.+.++++++
T Consensus 245 ~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~---DgtlLlSGd~dg~VcvWdi~S~Q~iRtl------ 315 (476)
T KOG0646|consen 245 LLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAIST---DGTLLLSGDEDGKVCVWDIYSKQCIRTL------ 315 (476)
T ss_pred ehhcCCcccccccccccccccceeeeeccccCCcceeEEEEec---CccEEEeeCCCCCEEEEecchHHHHHHH------
Confidence 876532 10 11123445789998 999999998 9999999999999999999999999883
Q ss_pred cccccccccCCCCC
Q 000722 311 ACHSVASWCHPRAP 324 (1331)
Q Consensus 311 ~~H~~~V~svafsp 324 (1331)
....+.|+.+.+.|
T Consensus 316 ~~~kgpVtnL~i~~ 329 (476)
T KOG0646|consen 316 QTSKGPVTNLQINP 329 (476)
T ss_pred hhhccccceeEeec
Confidence 22345565555544
No 141
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=6.5e-16 Score=169.63 Aligned_cols=246 Identities=15% Similarity=0.151 Sum_probs=174.2
Q ss_pred cccccCCCCCCCCceEEEEEeec-ceeEeeeecccCCCCCccccccccceeeehhhcccCCCcceEeecCC--Cceeeee
Q 000722 120 TSGFASPPPSTKGRHFLVICCVN-KAIFLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSS--DGVIRVL 196 (1331)
Q Consensus 120 ~~~V~svafspdg~~lLasgs~d-~iIvwDl~t~~~~~i~~~~~h~~~V~~Vaf~P~s~Spdg~~LasGs~--DGtIrlW 196 (1331)
...|.++.|+++|. +++++++| .+.++|..+++. +.+...+...+..+.|. .....++.++. |.+||..
T Consensus 14 ~~~i~sl~fs~~G~-~litss~dDsl~LYd~~~g~~--~~ti~skkyG~~~~~Ft-----h~~~~~i~sStk~d~tIryL 85 (311)
T KOG1446|consen 14 NGKINSLDFSDDGL-LLITSSEDDSLRLYDSLSGKQ--VKTINSKKYGVDLACFT-----HHSNTVIHSSTKEDDTIRYL 85 (311)
T ss_pred CCceeEEEecCCCC-EEEEecCCCeEEEEEcCCCce--eeEeecccccccEEEEe-----cCCceEEEccCCCCCceEEE
Confidence 55788999999998 55555555 555789888653 44455556677788883 34455555655 8899999
Q ss_pred ehhhheeehhhcCCCccchhhhhHhhhccccEEEeecCCCceEEEEeccCCCccccccccceeeeccCcEEEEEechhcc
Q 000722 197 SMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMG 276 (1331)
Q Consensus 197 Dl~t~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~ 276 (1331)
++.+.+.++.|. ||...|+.++ .+|.++.|+|++.|++|++||++..++..- + +...-..++|.|
T Consensus 86 sl~dNkylRYF~-GH~~~V~sL~---~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~------l--~~~~~pi~AfDp--- 150 (311)
T KOG1446|consen 86 SLHDNKYLRYFP-GHKKRVNSLS---VSPKDDTFLSSSLDKTVRLWDLRVKKCQGL------L--NLSGRPIAAFDP--- 150 (311)
T ss_pred EeecCceEEEcC-CCCceEEEEE---ecCCCCeEEecccCCeEEeeEecCCCCceE------E--ecCCCcceeECC---
Confidence 999999999998 9999999998 789999999999999999999998776442 1 222334579999
Q ss_pred CCCcEEEeecCceeEeeeccchh--hhcccCCCCcccccccccccCCCCCCCcee-eeeecce--eeeeecCcccccccc
Q 000722 277 GSPQLITIGADKTLAIWDTVSFK--ELRRIKPVPKLACHSVASWCHPRAPNLDIL-TCVKDSH--IWAIEHPTYSALTRP 351 (1331)
Q Consensus 277 dg~~LaSgs~Dg~IrIWDl~t~~--~l~~~~~~~~l~~H~~~V~svafspdg~lL-a~s~Dg~--IWdl~~~~~~~l~~~ 351 (1331)
.|-+++++...+.|++||++... +..++... .........+.|||||+.+ .+...+. +-|.-++..
T Consensus 151 ~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~---~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~------ 221 (311)
T KOG1446|consen 151 EGLIFALANGSELIKLYDLRSFDKGPFTTFSIT---DNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTV------ 221 (311)
T ss_pred CCcEEEEecCCCeEEEEEecccCCCCceeEccC---CCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcE------
Confidence 89999999888899999998753 33332211 1334566789999999955 4444453 344333321
Q ss_pred ccccccCCCcccccccc--ceEEEEEEeccCCccEeeecceeEEEEeecCCCCCCCCCC
Q 000722 352 LCELSSLVPPQVLAHHK--KLRVYCMVAHSLQPHLVATGTNVGVIISEFDPRSLPAVAP 408 (1331)
Q Consensus 352 ~~~~~~~~~~~~l~~h~--~~~I~~la~sp~~~~lLAtGs~DG~Il~VWDlr~~p~i~~ 408 (1331)
..++..+. ..--....|+| ++..+.+|++||.| .+|+++....+..
T Consensus 222 ---------~~tfs~~~~~~~~~~~a~ftP-ds~Fvl~gs~dg~i-~vw~~~tg~~v~~ 269 (311)
T KOG1446|consen 222 ---------KSTFSGYPNAGNLPLSATFTP-DSKFVLSGSDDGTI-HVWNLETGKKVAV 269 (311)
T ss_pred ---------eeeEeeccCCCCcceeEEECC-CCcEEEEecCCCcE-EEEEcCCCcEeeE
Confidence 11222221 11124678899 57789999999998 7999976544443
No 142
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.67 E-value=1.3e-14 Score=169.34 Aligned_cols=280 Identities=14% Similarity=0.167 Sum_probs=191.9
Q ss_pred cccccCCCcEEEEEeecCCceeEeecCCCceeeeccccceEEeeeccCCcccchhhhhhhhhhcccccccCCCCcccccC
Q 000722 5 KAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRG 84 (1331)
Q Consensus 5 ~~L~gHs~~V~~lafSPdg~~LaSgs~DGtV~VWD~~tg~~i~s~~~~~~~~i~~vspdg~~Lasgs~d~~g~~l~~l~g 84 (1331)
+....| .|..++|-|||..|+.+. +..+.|||...|..+.+++.|
T Consensus 8 r~~~~h--ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~llqtLKgH-------------------------------- 52 (1081)
T KOG1538|consen 8 RDKAEH--CINDIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQPLKGH-------------------------------- 52 (1081)
T ss_pred hccccc--chheeEECCCCceEEEec-CCEEEEEeCCCcccccccccc--------------------------------
Confidence 334445 899999999999877763 557899999998888888733
Q ss_pred CceeEEeeecchhhHHHHhhhccccccCCcccccccccccCCCCCCCCceEEEEEeeccee-EeeeecccCCCCCccccc
Q 000722 85 GSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQELD 163 (1331)
Q Consensus 85 g~V~sVaf~DgtIrvWdl~tg~~l~~~~~~~~~~~~~~V~svafspdg~~lLasgs~d~iI-vwDl~t~~~~~i~~~~~h 163 (1331)
.+.|++++|+.||+ .+++|+.|+.+ +|+.+-. + + ..-.|
T Consensus 53 -----------------------------------KDtVycVAys~dGk-rFASG~aDK~VI~W~~klE-G--~-LkYSH 92 (1081)
T KOG1538|consen 53 -----------------------------------KDTVYCVAYAKDGK-RFASGSADKSVIIWTSKLE-G--I-LKYSH 92 (1081)
T ss_pred -----------------------------------cceEEEEEEccCCc-eeccCCCceeEEEeccccc-c--e-eeecc
Confidence 33466788899998 88888888866 7854421 1 1 13468
Q ss_pred cccceeeehhhcccCCCcceEeecCCCceeeeeehhhheeehhhcCCCccchhhhhHhhhccccEEEeecCCCceEEEEe
Q 000722 164 NKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWS 243 (1331)
Q Consensus 164 ~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrVWD 243 (1331)
++.|.|+.| +|-.+.+++++... .-+|........+. .....+.|++| ..||.+|+.|-.||+|.+-+
T Consensus 93 ~D~IQCMsF-----NP~~h~LasCsLsd-FglWS~~qK~V~K~---kss~R~~~CsW---tnDGqylalG~~nGTIsiRN 160 (1081)
T KOG1538|consen 93 NDAIQCMSF-----NPITHQLASCSLSD-FGLWSPEQKSVSKH---KSSSRIICCSW---TNDGQYLALGMFNGTISIRN 160 (1081)
T ss_pred CCeeeEeec-----CchHHHhhhcchhh-ccccChhhhhHHhh---hhheeEEEeee---cCCCcEEEEeccCceEEeec
Confidence 999999999 56678899887543 66888765433221 23355666664 78999999999999999886
Q ss_pred ccCCCccccccccceeeeccCcEEEEEechhcc--CCCcEEEeecCceeEeeeccchhhhcccCCCCcccccccccccCC
Q 000722 244 ADHGQDSRELVPKLSLKAHDGGVVAVELSRVMG--GSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHP 321 (1331)
Q Consensus 244 l~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~--dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~sva 321 (1331)
-.....+. ...-.|.+.+|++++|+|.++ ....+++.....++.+|.+.. +.+.. -+.-.-.-.|+.
T Consensus 161 k~gEek~~----I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG-~~Igk------~r~L~FdP~Cis 229 (1081)
T KOG1538|consen 161 KNGEEKVK----IERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSG-KQIGK------DRALNFDPCCIS 229 (1081)
T ss_pred CCCCcceE----EeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecc-eeecc------cccCCCCchhhe
Confidence 54332221 111245778999999999532 235777888888888887753 33221 011111233888
Q ss_pred CCCCCcee-eeeecce--eeeeecCccccccccccccccCCCccccccccceEEEEEEeccCCccEeeecceeEEEEeec
Q 000722 322 RAPNLDIL-TCVKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEF 398 (1331)
Q Consensus 322 fspdg~lL-a~s~Dg~--IWdl~~~~~~~l~~~~~~~~~~~~~~~l~~h~~~~I~~la~sp~~~~lLAtGs~DG~Il~VW 398 (1331)
+.++|.++ .||.|+. ++.-. + ..+.++.. -+..||+++.+| ++..++.|+.||+| -.|
T Consensus 230 Yf~NGEy~LiGGsdk~L~~fTR~-G---------------vrLGTvg~-~D~WIWtV~~~P-NsQ~v~~GCqDGTi-ACy 290 (1081)
T KOG1538|consen 230 YFTNGEYILLGGSDKQLSLFTRD-G---------------VRLGTVGE-QDSWIWTVQAKP-NSQYVVVGCQDGTI-ACY 290 (1081)
T ss_pred eccCCcEEEEccCCCceEEEeec-C---------------eEEeeccc-cceeEEEEEEcc-CCceEEEEEccCee-ehh
Confidence 99999955 7888875 33322 1 12334433 334999999999 57779999999998 677
Q ss_pred CCC
Q 000722 399 DPR 401 (1331)
Q Consensus 399 Dlr 401 (1331)
++.
T Consensus 291 Nl~ 293 (1081)
T KOG1538|consen 291 NLI 293 (1081)
T ss_pred hhH
Confidence 764
No 143
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.66 E-value=1.2e-15 Score=178.88 Aligned_cols=251 Identities=19% Similarity=0.218 Sum_probs=175.5
Q ss_pred cccccCCCCCCCCceEEEEEeeccee-EeeeecccCCCCCccccccccceeeehhhcccCCCcceEeecCCCceeeeeeh
Q 000722 120 TSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSM 198 (1331)
Q Consensus 120 ~~~V~svafspdg~~lLasgs~d~iI-vwDl~t~~~~~i~~~~~h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl 198 (1331)
...|..+.|-| |+..|++.+.|..+ .||+++.+........+|...|.+++|+|. +...+++|+.||.|.|||+
T Consensus 100 ~nAifDl~wap-ge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~----n~~vF~tGgRDg~illWD~ 174 (720)
T KOG0321|consen 100 KNAIFDLKWAP-GESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPT----NPAVFCTGGRDGEILLWDC 174 (720)
T ss_pred cceeEeeccCC-CceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccC----CCcceeeccCCCcEEEEEE
Confidence 55677888999 66789999888888 899998776555568899999999999653 5668999999999999998
Q ss_pred hhhe------eehhhcCC--------------------Cccchhh---hhHhhhccccEEEeecCC-CceEEEEeccCCC
Q 000722 199 ISWK------LVRRYTGG--------------------HKGSISC---LMTFMASSGEALLVSGGS-DGLLILWSADHGQ 248 (1331)
Q Consensus 199 ~t~~------~v~~~~~g--------------------H~~~V~~---vawf~~spdg~lLaSgs~-DgtIrVWDl~tg~ 248 (1331)
+-.. ....+... |...|.+ +. +..|...|++++. |+.|+|||++...
T Consensus 175 R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv---~fkDe~tlaSaga~D~~iKVWDLRk~~ 251 (720)
T KOG0321|consen 175 RCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVV---LFKDESTLASAGAADSTIKVWDLRKNY 251 (720)
T ss_pred eccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEE---EEeccceeeeccCCCcceEEEeecccc
Confidence 6321 00111112 2222332 21 4568889999887 9999999999866
Q ss_pred ccccccccce--eeec---cCcEEEEEechhccCCCcEEEeecCceeEeeeccchhhhcccCCCCccccccccc--ccCC
Q 000722 249 DSRELVPKLS--LKAH---DGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVAS--WCHP 321 (1331)
Q Consensus 249 ~~~~~~~~~~--l~gH---~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V--~sva 321 (1331)
......+... +..| ..++.++.... .|.+|...+.|++|.+||+.+... .+...+.+|...- ..-.
T Consensus 252 ~~~r~ep~~~~~~~t~skrs~G~~nL~lDs---sGt~L~AsCtD~sIy~ynm~s~s~----sP~~~~sg~~~~sf~vks~ 324 (720)
T KOG0321|consen 252 TAYRQEPRGSDKYPTHSKRSVGQVNLILDS---SGTYLFASCTDNSIYFYNMRSLSI----SPVAEFSGKLNSSFYVKSE 324 (720)
T ss_pred cccccCCCcccCccCcccceeeeEEEEecC---CCCeEEEEecCCcEEEEeccccCc----CchhhccCcccceeeeeee
Confidence 5433222222 2333 34677888776 678888777899999999986442 1222233333211 1334
Q ss_pred CCCCCcee-eeeecce--eeeeecCccccccccccccccCCCccccccccceEEEEEEeccCCccEeeecceeEEEEeec
Q 000722 322 RAPNLDIL-TCVKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEF 398 (1331)
Q Consensus 322 fspdg~lL-a~s~Dg~--IWdl~~~~~~~l~~~~~~~~~~~~~~~l~~h~~~~I~~la~sp~~~~lLAtGs~DG~Il~VW 398 (1331)
.+|++.++ +++.|.+ +|.+.+.. .+...+.+|.. .|++++|.|..-.-++++++|-.+ ++|
T Consensus 325 lSpd~~~l~SgSsd~~ayiw~vs~~e--------------~~~~~l~Ght~-eVt~V~w~pS~~t~v~TcSdD~~~-kiW 388 (720)
T KOG0321|consen 325 LSPDDCSLLSGSSDEQAYIWVVSSPE--------------APPALLLGHTR-EVTTVRWLPSATTPVATCSDDFRV-KIW 388 (720)
T ss_pred cCCCCceEeccCCCcceeeeeecCcc--------------CChhhhhCcce-EEEEEeeccccCCCceeeccCcce-EEE
Confidence 67888855 7778875 88887642 34456778888 899999999765668888999998 899
Q ss_pred CCC
Q 000722 399 DPR 401 (1331)
Q Consensus 399 Dlr 401 (1331)
++.
T Consensus 389 ~l~ 391 (720)
T KOG0321|consen 389 RLS 391 (720)
T ss_pred ecc
Confidence 983
No 144
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.66 E-value=2.7e-15 Score=177.44 Aligned_cols=272 Identities=17% Similarity=0.197 Sum_probs=199.3
Q ss_pred ecchhhHHHHhhhccccccCCcccccccccccCCCCCCCCceEEEEEeecceeEeeeecccCCCCCccccccccceeeeh
Q 000722 93 YDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFLDLVTMRGRDIPKQELDNKSLVCMEF 172 (1331)
Q Consensus 93 ~DgtIrvWdl~tg~~l~~~~~~~~~~~~~~V~svafspdg~~lLasgs~d~iIvwDl~t~~~~~i~~~~~h~~~V~~Vaf 172 (1331)
.||.|-+|++..+-+.. ..+.++.+..|-+++|++.++ ++.++.++.+..||+.+++. ........+.|.+++.
T Consensus 45 t~g~IEiwN~~~~w~~~---~vi~g~~drsIE~L~W~e~~R-LFS~g~sg~i~EwDl~~lk~--~~~~d~~gg~IWsiai 118 (691)
T KOG2048|consen 45 TDGNIEIWNLSNNWFLE---PVIHGPEDRSIESLAWAEGGR-LFSSGLSGSITEWDLHTLKQ--KYNIDSNGGAIWSIAI 118 (691)
T ss_pred cCCcEEEEccCCCceee---EEEecCCCCceeeEEEccCCe-EEeecCCceEEEEecccCce--eEEecCCCcceeEEEe
Confidence 68999999988764432 445567678899999997775 87777777777999998653 3345666889999999
Q ss_pred hhcccCCCcceEeecCCCceeeeeehhhheeehhh-cCCCccchhhhhHhhhccccEEEeecCCCceEEEEeccCCCccc
Q 000722 173 LSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRY-TGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSR 251 (1331)
Q Consensus 173 ~P~s~Spdg~~LasGs~DGtIrlWDl~t~~~v~~~-~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrVWDl~tg~~~~ 251 (1331)
+|.+..++.||+||.+..++...++..... ....++.|.++. +++++..+++|+.||.|++||...++.+.
T Consensus 119 -----~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLsls---w~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~ 190 (691)
T KOG2048|consen 119 -----NPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLS---WNPTGTKIAGGSIDGVIRIWDVKSGQTLH 190 (691)
T ss_pred -----CCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEE---ecCCccEEEecccCceEEEEEcCCCceEE
Confidence 567899999999998888887776654322 224568999998 68999999999999999999999887654
Q ss_pred ccc-ccceeee-ccCcEEEEEechhccCCCcEEEeecCceeEeeeccchhhhcccCCCCcccccccccccCCCCCCCc-e
Q 000722 252 ELV-PKLSLKA-HDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLD-I 328 (1331)
Q Consensus 252 ~~~-~~~~l~g-H~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg~-l 328 (1331)
... ....+.. -..-|+++.|-. ...|++|..-|+|.+||...+..++. ...|...|.+++..+++. +
T Consensus 191 ~~~~~~d~l~k~~~~iVWSv~~Lr----d~tI~sgDS~G~V~FWd~~~gTLiqS------~~~h~adVl~Lav~~~~d~v 260 (691)
T KOG2048|consen 191 IITMQLDRLSKREPTIVWSVLFLR----DSTIASGDSAGTVTFWDSIFGTLIQS------HSCHDADVLALAVADNEDRV 260 (691)
T ss_pred EeeecccccccCCceEEEEEEEee----cCcEEEecCCceEEEEcccCcchhhh------hhhhhcceeEEEEcCCCCeE
Confidence 100 0111111 233578888875 45899999999999999999998877 678999999999999966 5
Q ss_pred eeeeecceeeeeecCccccccccccccccCCCccccccccceEEEEEEeccCCccEeeecceeEEEEeecCCCC
Q 000722 329 LTCVKDSHIWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPRS 402 (1331)
Q Consensus 329 La~s~Dg~IWdl~~~~~~~l~~~~~~~~~~~~~~~l~~h~~~~I~~la~sp~~~~lLAtGs~DG~Il~VWDlr~ 402 (1331)
+++|.|+++..+...+.... |. .......|.. .|.+++..+. .+.+|+.|..+ .+-..++
T Consensus 261 fsaGvd~~ii~~~~~~~~~~----wv-----~~~~r~~h~h-dvrs~av~~~---~l~sgG~d~~l-~i~~s~~ 320 (691)
T KOG2048|consen 261 FSAGVDPKIIQYSLTTNKSE----WV-----INSRRDLHAH-DVRSMAVIEN---ALISGGRDFTL-AICSSRE 320 (691)
T ss_pred EEccCCCceEEEEecCCccc----ee-----eeccccCCcc-cceeeeeecc---eEEecceeeEE-EEccccc
Confidence 58899998766553211000 11 1111223444 7888888874 79999999987 3444443
No 145
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.66 E-value=4.2e-16 Score=170.28 Aligned_cols=288 Identities=16% Similarity=0.198 Sum_probs=198.6
Q ss_pred cEEEEEeecCCceeEeecCCCceeeeccccceEEeeeccCCcccchhhhhhhhhhcccccccCCCCcccccCCceeEEee
Q 000722 13 KIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRGGSVKQVNF 92 (1331)
Q Consensus 13 ~V~~lafSPdg~~LaSgs~DGtV~VWD~~tg~~i~s~~~~~~~~i~~vspdg~~Lasgs~d~~g~~l~~l~gg~V~sVaf 92 (1331)
-.+.+.|+|||..|++-+.|..+++|++...-.-.. .+...... ....++...+..|...+|
T Consensus 51 f~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~-----~~~~~~~~-------------~~~~~r~~eg~tvydy~w 112 (406)
T KOG2919|consen 51 FLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKK-----ADGPLNFS-------------KHLSYRYQEGETVYDYCW 112 (406)
T ss_pred hhccceeCCCCceEEeecccCeeeEEecChhhcccC-----CCCccccc-------------cceeEEeccCCEEEEEEe
Confidence 456789999999999999999999999752110000 00000000 000011122334444444
Q ss_pred ------------------ecchhhHHHHhhhccccccCCcccccc--cccccCCCCCCCCceEEEEEeecceeEeee-ec
Q 000722 93 ------------------YDDDVRFWQLWRNRAAAAEAPTAVSNV--TSGFASPPPSTKGRHFLVICCVNKAIFLDL-VT 151 (1331)
Q Consensus 93 ------------------~DgtIrvWdl~tg~~l~~~~~~~~~~~--~~~V~svafspdg~~lLasgs~d~iIvwDl-~t 151 (1331)
.|.-|++||.-+++....-. ...|. -..-.+++|+|||. .|.+|....+.++|. +.
T Consensus 113 Ys~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~--~ydh~de~taAhsL~Fs~DGe-qlfaGykrcirvFdt~Rp 189 (406)
T KOG2919|consen 113 YSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYR--AYDHQDEYTAAHSLQFSPDGE-QLFAGYKRCIRVFDTSRP 189 (406)
T ss_pred eeccccCCCccceeeeccccCceeeeeccccccccchh--hhhhHHhhhhheeEEecCCCC-eEeecccceEEEeeccCC
Confidence 58889999998887542111 11111 11335789999998 777777777778888 45
Q ss_pred ccCCCCCccccc-----cccceeeehhhcccCCCcceEeecCCCceeeeeehhhheeehhhcCCCccchhhhhHhhhccc
Q 000722 152 MRGRDIPKQELD-----NKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSG 226 (1331)
Q Consensus 152 ~~~~~i~~~~~h-----~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~~~v~~~~~gH~~~V~~vawf~~spd 226 (1331)
++.-.+.....+ .+.|.|++|+|. +...++.|+...++-||....+.++..+- +|.+.|+.++ +.++
T Consensus 190 Gr~c~vy~t~~~~k~gq~giisc~a~sP~----~~~~~a~gsY~q~~giy~~~~~~pl~llg-gh~gGvThL~---~~ed 261 (406)
T KOG2919|consen 190 GRDCPVYTTVTKGKFGQKGIISCFAFSPM----DSKTLAVGSYGQRVGIYNDDGRRPLQLLG-GHGGGVTHLQ---WCED 261 (406)
T ss_pred CCCCcchhhhhcccccccceeeeeeccCC----CCcceeeecccceeeeEecCCCCceeeec-ccCCCeeeEE---eccC
Confidence 443222222223 668899999763 56689999999999999988888888776 9999999998 5799
Q ss_pred cEEEeecCC-CceEEEEeccCCCccccccccceeeeccC-cEEEEEechhccCCCcEEEeecCceeEeeeccc-hhhhcc
Q 000722 227 EALLVSGGS-DGLLILWSADHGQDSRELVPKLSLKAHDG-GVVAVELSRVMGGSPQLITIGADKTLAIWDTVS-FKELRR 303 (1331)
Q Consensus 227 g~lLaSgs~-DgtIrVWDl~tg~~~~~~~~~~~l~gH~~-~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t-~~~l~~ 303 (1331)
|+.|.+|+. |-.|.+||++.... ++..|..|.. .-..|-|.-. +++++|++|+.||.|++||+.+ +..+..
T Consensus 262 Gn~lfsGaRk~dkIl~WDiR~~~~-----pv~~L~rhv~~TNQRI~FDld-~~~~~LasG~tdG~V~vwdlk~~gn~~sv 335 (406)
T KOG2919|consen 262 GNKLFSGARKDDKILCWDIRYSRD-----PVYALERHVGDTNQRILFDLD-PKGEILASGDTDGSVRVWDLKDLGNEVSV 335 (406)
T ss_pred cCeecccccCCCeEEEEeehhccc-----hhhhhhhhccCccceEEEecC-CCCceeeccCCCccEEEEecCCCCCcccc
Confidence 999999885 78999999987542 4555777765 3334555432 2789999999999999999987 553333
Q ss_pred cCCCCcccccccccccCCCCCCCceeeeeecceeeeee
Q 000722 304 IKPVPKLACHSVASWCHPRAPNLDILTCVKDSHIWAIE 341 (1331)
Q Consensus 304 ~~~~~~l~~H~~~V~svafspdg~lLa~s~Dg~IWdl~ 341 (1331)
+..|...+..++++|--.+++.+...+++...
T Consensus 336 ------~~~~sd~vNgvslnP~mpilatssGqr~f~~~ 367 (406)
T KOG2919|consen 336 ------TGNYSDTVNGVSLNPIMPILATSSGQRIFKYP 367 (406)
T ss_pred ------cccccccccceecCcccceeeeccCceeecCC
Confidence 56788899999999998888777766766544
No 146
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.65 E-value=2.5e-15 Score=171.96 Aligned_cols=354 Identities=16% Similarity=0.198 Sum_probs=227.1
Q ss_pred cccccCC-CcEEEEEeecCCceeEeecCCCceeeeccccceEEeeeccCCcccchhhh--hhhhhhcccccccC------
Q 000722 5 KAFRPTN-DKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVG--AKLEKLAEGELEHK------ 75 (1331)
Q Consensus 5 ~~L~gHs-~~V~~lafSPdg~~LaSgs~DGtV~VWD~~tg~~i~s~~~~~~~~i~~vs--pdg~~Lasgs~d~~------ 75 (1331)
..|+++. .-|.|++|.++|. ++||+.+|.|.||+..+.+..+... .|..++.+.. .+|..|. +..|..
T Consensus 239 ~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~-aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~ 315 (626)
T KOG2106|consen 239 GIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVH-AHDGGVFSLCMLRDGTLLS-GGKDRKIILWDD 315 (626)
T ss_pred eccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEee-ecCCceEEEEEecCccEee-cCccceEEeccc
Confidence 3455554 4699999999885 6799999999999998888777777 5556666555 4555444 543321
Q ss_pred ----CCCcccccC-CceeEEeeecchhhHHHHhhhccc----ccc-CCcccccccccccCCCCCCCCceEEEEEeeccee
Q 000722 76 ----GKPTEAMRG-GSVKQVNFYDDDVRFWQLWRNRAA----AAE-APTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI 145 (1331)
Q Consensus 76 ----g~~l~~l~g-g~V~sVaf~DgtIrvWdl~tg~~l----~~~-~~~~~~~~~~~V~svafspdg~~lLasgs~d~iI 145 (1331)
.+.+.+-.. |.|+.|.=..+.+.+=-. .+..+ ... .....+| ....+.++.+|+.+ .+++|+.|+.+
T Consensus 316 ~y~k~r~~elPe~~G~iRtv~e~~~di~vGTt-rN~iL~Gt~~~~f~~~v~gh-~delwgla~hps~~-q~~T~gqdk~v 392 (626)
T KOG2106|consen 316 NYRKLRETELPEQFGPIRTVAEGKGDILVGTT-RNFILQGTLENGFTLTVQGH-GDELWGLATHPSKN-QLLTCGQDKHV 392 (626)
T ss_pred cccccccccCchhcCCeeEEecCCCcEEEeec-cceEEEeeecCCceEEEEec-ccceeeEEcCCChh-heeeccCcceE
Confidence 011111111 333333321111111000 00000 000 1122233 45778888999887 77888888777
Q ss_pred -EeeeecccCCCCCccccccccceeeehhhcccCCCcceEeecCCCceeeeeehhhheeehhhcCCCccchhhhhHhhhc
Q 000722 146 -FLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMAS 224 (1331)
Q Consensus 146 -vwDl~t~~~~~i~~~~~h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~~~v~~~~~gH~~~V~~vawf~~s 224 (1331)
+|+-. + +.....-.+++.|+.|| |.| .++.|+..|...+.|.++...+..-. . +.++++++ ++
T Consensus 393 ~lW~~~--k---~~wt~~~~d~~~~~~fh-----psg-~va~Gt~~G~w~V~d~e~~~lv~~~~-d-~~~ls~v~---ys 456 (626)
T KOG2106|consen 393 RLWNDH--K---LEWTKIIEDPAECADFH-----PSG-VVAVGTATGRWFVLDTETQDLVTIHT-D-NEQLSVVR---YS 456 (626)
T ss_pred EEccCC--c---eeEEEEecCceeEeecc-----Ccc-eEEEeeccceEEEEecccceeEEEEe-c-CCceEEEE---Ec
Confidence 88721 1 11223346789999995 567 99999999999999999866665544 3 78899998 89
Q ss_pred cccEEEeecCCCceEEEEeccCCCccccccccceeeeccCcEEEEEechhccCCCcEEEeecCceeEeeeccchhhhccc
Q 000722 225 SGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRI 304 (1331)
Q Consensus 225 pdg~lLaSgs~DgtIrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~ 304 (1331)
|+|.+|+.|+.|+.|.+|.+..+..... ... +.|..+|+.+.|++ |+++|.+-+-|-.|..|.....+.....
T Consensus 457 p~G~~lAvgs~d~~iyiy~Vs~~g~~y~--r~~--k~~gs~ithLDwS~---Ds~~~~~~S~d~eiLyW~~~~~~~~ts~ 529 (626)
T KOG2106|consen 457 PDGAFLAVGSHDNHIYIYRVSANGRKYS--RVG--KCSGSPITHLDWSS---DSQFLVSNSGDYEILYWKPSECKQITSV 529 (626)
T ss_pred CCCCEEEEecCCCeEEEEEECCCCcEEE--Eee--eecCceeEEeeecC---CCceEEeccCceEEEEEccccCccccee
Confidence 9999999999999999999876543211 111 33448899999999 8999999999999999955443333332
Q ss_pred CCCCcc------------cccccccccCCCCCCCceeeeeecc-eeeeeecCccccccccccccccCCCccccccccceE
Q 000722 305 KPVPKL------------ACHSVASWCHPRAPNLDILTCVKDS-HIWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLR 371 (1331)
Q Consensus 305 ~~~~~l------------~~H~~~V~svafspdg~lLa~s~Dg-~IWdl~~~~~~~l~~~~~~~~~~~~~~~l~~h~~~~ 371 (1331)
+.+.+. ..|...+..++.+.+.++++++.|. +|.-++.+-. ....+...+.+|+. .
T Consensus 530 kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~----------s~rA~~he~~ghs~-~ 598 (626)
T KOG2106|consen 530 KDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCS----------SPRAPSHEYGGHSS-H 598 (626)
T ss_pred cceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccC----------CCcccceeeccccc-e
Confidence 222211 2344456677777778888777664 4433332100 01123345677888 9
Q ss_pred EEEEEeccCCccEeeecceeEEEEeecCC
Q 000722 372 VYCMVAHSLQPHLVATGTNVGVIISEFDP 400 (1331)
Q Consensus 372 I~~la~sp~~~~lLAtGs~DG~Il~VWDl 400 (1331)
|.+++|...+..++.+| .|..| ..|++
T Consensus 599 vt~V~Fl~~d~~li~tg-~D~Si-~qW~l 625 (626)
T KOG2106|consen 599 VTNVAFLCKDSHLISTG-KDTSI-MQWRL 625 (626)
T ss_pred eEEEEEeeCCceEEecC-CCceE-EEEEe
Confidence 99999999766766666 77776 48875
No 147
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.64 E-value=2.1e-15 Score=162.61 Aligned_cols=227 Identities=17% Similarity=0.175 Sum_probs=164.6
Q ss_pred cccCCCCCCCCceEEEEEeecceeEeeeecccCC--CC--CccccccccceeeehhhcccCCCcceEeecCCCceeeeee
Q 000722 122 GFASPPPSTKGRHFLVICCVNKAIFLDLVTMRGR--DI--PKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLS 197 (1331)
Q Consensus 122 ~V~svafspdg~~lLasgs~d~iIvwDl~t~~~~--~i--~~~~~h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWD 197 (1331)
.|.|+.|.|++. -+++-.++.+++|++...... .+ .....+....++-.|+| +.+++.+++. .|++++.||
T Consensus 125 ~i~cvew~Pns~-klasm~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~Wsp---HHdgnqv~tt-~d~tl~~~D 199 (370)
T KOG1007|consen 125 KINCVEWEPNSD-KLASMDDNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSP---HHDGNQVATT-SDSTLQFWD 199 (370)
T ss_pred ceeeEEEcCCCC-eeEEeccCceEEEEcccCcchheeecccccccccceecccccCC---CCccceEEEe-CCCcEEEEE
Confidence 577889999987 667777888889988764321 11 11123466788889977 6788888877 578999999
Q ss_pred hhhheeehhhcCCCccchhhhhHhhhccc-cEEEeecCCCceEEEEeccCCCccccccccceeeeccCcEEEEEechhcc
Q 000722 198 MISWKLVRRYTGGHKGSISCLMTFMASSG-EALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMG 276 (1331)
Q Consensus 198 l~t~~~v~~~~~gH~~~V~~vawf~~spd-g~lLaSgs~DgtIrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~ 276 (1331)
+++.++...+..+|...|..+. |+|+ ..+|+||+.||.|++||.+..+ .|+..+.+|..+|+++.|+|.
T Consensus 200 ~RT~~~~~sI~dAHgq~vrdlD---fNpnkq~~lvt~gDdgyvriWD~R~tk-----~pv~el~~HsHWvW~VRfn~~-- 269 (370)
T KOG1007|consen 200 LRTMKKNNSIEDAHGQRVRDLD---FNPNKQHILVTCGDDGYVRIWDTRKTK-----FPVQELPGHSHWVWAVRFNPE-- 269 (370)
T ss_pred ccchhhhcchhhhhcceeeecc---CCCCceEEEEEcCCCccEEEEeccCCC-----ccccccCCCceEEEEEEecCc--
Confidence 9999998888889999999998 6666 4578999999999999998765 367778999999999999995
Q ss_pred CCCcEEEeecCceeEeeeccchhhhcccCCCCcccccccccccCCCCCCCceeeeeecceeeeeecCccccccccccccc
Q 000722 277 GSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDILTCVKDSHIWAIEHPTYSALTRPLCELS 356 (1331)
Q Consensus 277 dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg~lLa~s~Dg~IWdl~~~~~~~l~~~~~~~~ 356 (1331)
..++|++||.|..|.+|...+-..-+.+ .|..|- +-..| -|.. .+...+.
T Consensus 270 hdqLiLs~~SDs~V~Lsca~svSSE~qi----------------~~~~de---se~e~---~dse--------er~kpL~ 319 (370)
T KOG1007|consen 270 HDQLILSGGSDSAVNLSCASSVSSEQQI----------------EFEDDE---SESED---EDSE--------ERVKPLQ 319 (370)
T ss_pred cceEEEecCCCceeEEEecccccccccc----------------cccccc---ccCcc---hhhH--------Hhccccc
Confidence 5679999999999999986543321111 110000 00000 0000 0000000
Q ss_pred cCCCccccccccceEEEEEEeccCCccEeeecceeEEEE
Q 000722 357 SLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVII 395 (1331)
Q Consensus 357 ~~~~~~~l~~h~~~~I~~la~sp~~~~lLAtGs~DG~Il 395 (1331)
.-.+.++..|.+ .|++++||..++.++|+-+.||.+|
T Consensus 320 -dg~l~tydehED-SVY~~aWSsadPWiFASLSYDGRvi 356 (370)
T KOG1007|consen 320 -DGQLETYDEHED-SVYALAWSSADPWIFASLSYDGRVI 356 (370)
T ss_pred -cccccccccccc-ceEEEeeccCCCeeEEEeccCceEE
Confidence 112456777888 9999999999999999999999984
No 148
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.64 E-value=8.4e-16 Score=175.05 Aligned_cols=245 Identities=15% Similarity=0.105 Sum_probs=178.7
Q ss_pred ecchhhHHHHhhhccccccCCcccccccccccCCCCCCCCceEEEEEeeccee-EeeeecccCCCCCccccccccceeee
Q 000722 93 YDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQELDNKSLVCME 171 (1331)
Q Consensus 93 ~DgtIrvWdl~tg~~l~~~~~~~~~~~~~~V~svafspdg~~lLasgs~d~iI-vwDl~t~~~~~i~~~~~h~~~V~~Va 171 (1331)
.|..+++|.-..............+.....|.+..++ .++++|+.++++ +||++. ..+...++.|...|+||.
T Consensus 55 gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s~S----~y~~sgG~~~~Vkiwdl~~--kl~hr~lkdh~stvt~v~ 128 (673)
T KOG4378|consen 55 GDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACASQS----LYEISGGQSGCVKIWDLRA--KLIHRFLKDHQSTVTYVD 128 (673)
T ss_pred CceeEEEecccCCCCccceeeccccchHHHHhhhhcc----eeeeccCcCceeeehhhHH--HHHhhhccCCcceeEEEE
Confidence 4666777753322111111122223323344555554 488888888888 999985 335567899999999999
Q ss_pred hhhcccCCCcceEeecCCCceeeeeehhhheeehhhcCCCccchhhhhHhhhcccc-EEEeecCCCceEEEEeccCCCcc
Q 000722 172 FLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGE-ALLVSGGSDGLLILWSADHGQDS 250 (1331)
Q Consensus 172 f~P~s~Spdg~~LasGs~DGtIrlWDl~t~~~v~~~~~gH~~~V~~vawf~~spdg-~lLaSgs~DgtIrVWDl~tg~~~ 250 (1331)
| +....+|++++..|-|.|..+.++.....|..+....|.-+. +++.. .+|.+++.+|.|.+||+......
T Consensus 129 Y-----N~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~---ys~skr~lL~~asd~G~VtlwDv~g~sp~ 200 (673)
T KOG4378|consen 129 Y-----NNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLR---YSPSKRFLLSIASDKGAVTLWDVQGMSPI 200 (673)
T ss_pred e-----cCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEee---cccccceeeEeeccCCeEEEEeccCCCcc
Confidence 9 567889999999999999999998877777534445555565 55554 46778999999999999876654
Q ss_pred ccccccceeeeccCcEEEEEechhccCCCcEEEeecCceeEeeeccchhhhcccCCCCcccccccccccCCCCCCCceee
Q 000722 251 RELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDILT 330 (1331)
Q Consensus 251 ~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg~lLa 330 (1331)
..+ .+.|..+...|+|+|. +..+|++.|.|+.|.+||.+..+...++ ....+.+.++|+++|.+|+
T Consensus 201 ~~~-----~~~HsAP~~gicfsps--ne~l~vsVG~Dkki~~yD~~s~~s~~~l-------~y~~Plstvaf~~~G~~L~ 266 (673)
T KOG4378|consen 201 FHA-----SEAHSAPCRGICFSPS--NEALLVSVGYDKKINIYDIRSQASTDRL-------TYSHPLSTVAFSECGTYLC 266 (673)
T ss_pred cch-----hhhccCCcCcceecCC--ccceEEEecccceEEEeeccccccccee-------eecCCcceeeecCCceEEE
Confidence 433 4789999999999994 7889999999999999999876654442 2344667899999999885
Q ss_pred -eeeccee--eeeecCccccccccccccccCCCccccccccceEEEEEEeccC
Q 000722 331 -CVKDSHI--WAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSL 380 (1331)
Q Consensus 331 -~s~Dg~I--Wdl~~~~~~~l~~~~~~~~~~~~~~~l~~h~~~~I~~la~sp~ 380 (1331)
|...|+| ||++.. ..|+.++..|.. .|+|++|-|.
T Consensus 267 aG~s~G~~i~YD~R~~--------------k~Pv~v~sah~~-sVt~vafq~s 304 (673)
T KOG4378|consen 267 AGNSKGELIAYDMRST--------------KAPVAVRSAHDA-SVTRVAFQPS 304 (673)
T ss_pred eecCCceEEEEecccC--------------CCCceEeeeccc-ceeEEEeeec
Confidence 5566774 777742 246667778888 7999999983
No 149
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.63 E-value=1.2e-15 Score=174.36 Aligned_cols=251 Identities=18% Similarity=0.156 Sum_probs=164.4
Q ss_pred cccccCCCcEEEEEeecCCcee-EeecCCCceeeeccccceEEeeeccCCcccchhhhhhhhhhcccccccCCCCccccc
Q 000722 5 KAFRPTNDKIVKIQLHPTHPWL-VTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMR 83 (1331)
Q Consensus 5 ~~L~gHs~~V~~lafSPdg~~L-aSgs~DGtV~VWD~~tg~~i~s~~~~~~~~i~~vspdg~~Lasgs~d~~g~~l~~l~ 83 (1331)
+.+.+|. .+.+++|+|+++.+ ++++.++.|++||..+++.+..+..++........++++.+...
T Consensus 25 ~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~------------- 90 (300)
T TIGR03866 25 RTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPELFALHPNGKILYIA------------- 90 (300)
T ss_pred EEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCccEEEECCCCCEEEEE-------------
Confidence 3455553 47889999999876 67778999999999999888777643211111122333333221
Q ss_pred CCceeEEeeecchhhHHHHhhhccccccCCcccccccccccCCCCCCCCceEEEEEeecc-ee-EeeeecccCCCCCccc
Q 000722 84 GGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNK-AI-FLDLVTMRGRDIPKQE 161 (1331)
Q Consensus 84 gg~V~sVaf~DgtIrvWdl~tg~~l~~~~~~~~~~~~~~V~svafspdg~~lLasgs~d~-iI-vwDl~t~~~~~i~~~~ 161 (1331)
...|+.+++||+.+.+.+.. ... ...+.+++|+|+++ +++++..+. .+ .||..+++... . .
T Consensus 91 -------~~~~~~l~~~d~~~~~~~~~----~~~--~~~~~~~~~~~dg~-~l~~~~~~~~~~~~~d~~~~~~~~--~-~ 153 (300)
T TIGR03866 91 -------NEDDNLVTVIDIETRKVLAE----IPV--GVEPEGMAVSPDGK-IVVNTSETTNMAHFIDTKTYEIVD--N-V 153 (300)
T ss_pred -------cCCCCeEEEEECCCCeEEeE----eeC--CCCcceEEECCCCC-EEEEEecCCCeEEEEeCCCCeEEE--E-E
Confidence 11478899999877654321 110 12356788999998 666666543 34 45876543211 1 1
Q ss_pred cccccceeeehhhcccCCCcceEe-ecCCCceeeeeehhhheeehhhcC----CCccch--hhhhHhhhccccEEE-eec
Q 000722 162 LDNKSLVCMEFLSRSAVGDVPLVA-FGSSDGVIRVLSMISWKLVRRYTG----GHKGSI--SCLMTFMASSGEALL-VSG 233 (1331)
Q Consensus 162 ~h~~~V~~Vaf~P~s~Spdg~~La-sGs~DGtIrlWDl~t~~~v~~~~~----gH~~~V--~~vawf~~spdg~lL-aSg 233 (1331)
.....+.++.| ++++++++ ++..++.|++||+.+++.+..+.. .+...+ ..+. ++++++++ ++.
T Consensus 154 ~~~~~~~~~~~-----s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~---~s~dg~~~~~~~ 225 (300)
T TIGR03866 154 LVDQRPRFAEF-----TADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIK---LTKDGKTAFVAL 225 (300)
T ss_pred EcCCCccEEEE-----CCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceE---ECCCCCEEEEEc
Confidence 22345677889 77898875 455699999999999887665531 111122 2343 68888874 445
Q ss_pred CCCceEEEEeccCCCccccccccceeeeccCcEEEEEechhccCCCcEEEe-ecCceeEeeeccchhhhccc
Q 000722 234 GSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITI-GADKTLAIWDTVSFKELRRI 304 (1331)
Q Consensus 234 s~DgtIrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSg-s~Dg~IrIWDl~t~~~l~~~ 304 (1331)
+.++.+.+||+.+++.... + .+...+.+++|+| ++.+|+++ +.++.|++||+++++++.++
T Consensus 226 ~~~~~i~v~d~~~~~~~~~------~-~~~~~~~~~~~~~---~g~~l~~~~~~~~~i~v~d~~~~~~~~~~ 287 (300)
T TIGR03866 226 GPANRVAVVDAKTYEVLDY------L-LVGQRVWQLAFTP---DEKYLLTTNGVSNDVSVIDVAALKVIKSI 287 (300)
T ss_pred CCCCeEEEEECCCCcEEEE------E-EeCCCcceEEECC---CCCEEEEEcCCCCeEEEEECCCCcEEEEE
Confidence 5677899999987764332 1 2445789999999 78888876 56999999999999887764
No 150
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.63 E-value=6.5e-16 Score=192.06 Aligned_cols=246 Identities=16% Similarity=0.222 Sum_probs=183.6
Q ss_pred ccccCCCCCCCCce---EEEEEeeccee-Eeeeec----ccCCCCCccccccccceeeehhhcccCCCcceEeecCCCce
Q 000722 121 SGFASPPPSTKGRH---FLVICCVNKAI-FLDLVT----MRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGV 192 (1331)
Q Consensus 121 ~~V~svafspdg~~---lLasgs~d~iI-vwDl~t----~~~~~i~~~~~h~~~V~~Vaf~P~s~Spdg~~LasGs~DGt 192 (1331)
.+++.++|.+.|.. +|++|.+|+.| +||... .+...+.....|.+.|..+.|++. .+++|++|++||.
T Consensus 65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~----q~nlLASGa~~ge 140 (1049)
T KOG0307|consen 65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPF----QGNLLASGADDGE 140 (1049)
T ss_pred ccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeecccc----CCceeeccCCCCc
Confidence 34566777776654 69999999877 787654 222345567889999999999431 3459999999999
Q ss_pred eeeeehhhheeehhh-cCCCccchhhhhHhhhccccEEEeecCCCceEEEEeccCCCccccccccceeeecc--CcEEEE
Q 000722 193 IRVLSMISWKLVRRY-TGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHD--GGVVAV 269 (1331)
Q Consensus 193 IrlWDl~t~~~v~~~-~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrVWDl~tg~~~~~~~~~~~l~gH~--~~V~sv 269 (1331)
|.|||+.+-+.-... ...-...|.|++| .......|++++.+|++.|||++..+.+-. +..|. ..+..+
T Consensus 141 I~iWDlnn~~tP~~~~~~~~~~eI~~lsW--NrkvqhILAS~s~sg~~~iWDlr~~~pii~------ls~~~~~~~~S~l 212 (1049)
T KOG0307|consen 141 ILIWDLNKPETPFTPGSQAPPSEIKCLSW--NRKVSHILASGSPSGRAVIWDLRKKKPIIK------LSDTPGRMHCSVL 212 (1049)
T ss_pred EEEeccCCcCCCCCCCCCCCcccceEecc--chhhhHHhhccCCCCCceeccccCCCcccc------cccCCCccceeee
Confidence 999999874443333 1134678999998 566678999999999999999998764332 23332 347899
Q ss_pred EechhccCCCcEEEeecCc---eeEeeeccchhhhcccCCCCcccccccccccCCCCCCC-c-eeeeeecce--eeeeec
Q 000722 270 ELSRVMGGSPQLITIGADK---TLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNL-D-ILTCVKDSH--IWAIEH 342 (1331)
Q Consensus 270 afsp~~~dg~~LaSgs~Dg---~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg-~-lLa~s~Dg~--IWdl~~ 342 (1331)
+||| ++...|+++++|. .|.+||++.-. .+...+++|..+|.++.|++.. . +|+++.|++ +|+.++
T Consensus 213 ~WhP--~~aTql~~As~dd~~PviqlWDlR~as-----sP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~t 285 (1049)
T KOG0307|consen 213 AWHP--DHATQLLVASGDDSAPVIQLWDLRFAS-----SPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNT 285 (1049)
T ss_pred eeCC--CCceeeeeecCCCCCceeEeecccccC-----CchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCC
Confidence 9999 4667777777654 58999987533 2333478999999999999976 4 558999998 598887
Q ss_pred CccccccccccccccCCCccccccccceEEEEEEeccCCccEeeecceeEEEEeecCCCC
Q 000722 343 PTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPRS 402 (1331)
Q Consensus 343 ~~~~~l~~~~~~~~~~~~~~~l~~h~~~~I~~la~sp~~~~lLAtGs~DG~Il~VWDlr~ 402 (1331)
++. +..+...++ .+..+.|+|.++.++++.+-||.| .|+.+..
T Consensus 286 gEv---------------l~~~p~~~n-W~fdv~w~pr~P~~~A~asfdgkI-~I~sl~~ 328 (1049)
T KOG0307|consen 286 GEV---------------LGELPAQGN-WCFDVQWCPRNPSVMAAASFDGKI-SIYSLQG 328 (1049)
T ss_pred ceE---------------eeecCCCCc-ceeeeeecCCCcchhhhheeccce-eeeeeec
Confidence 532 344555555 899999999999999999999998 7887653
No 151
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.62 E-value=6.2e-15 Score=180.09 Aligned_cols=303 Identities=14% Similarity=0.208 Sum_probs=200.9
Q ss_pred cccCCCcEEEEEeecCCceeEeecCCCceeeeccccceEEeeeccCCcccchhhhhhhhhhcccccccCCCCcccccCCc
Q 000722 7 FRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRGGS 86 (1331)
Q Consensus 7 L~gHs~~V~~lafSPdg~~LaSgs~DGtV~VWD~~tg~~i~s~~~~~~~~i~~vspdg~~Lasgs~d~~g~~l~~l~gg~ 86 (1331)
..+....-..+.|||-.+.+++++..-.|+|||++.++++..|..+.... ..
T Consensus 1060 ~~~n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~----------------------------t~ 1111 (1387)
T KOG1517|consen 1060 MTGNNQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPD----------------------------TR 1111 (1387)
T ss_pred HhcCCCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCC----------------------------Cc
Confidence 34444566788999999999999988899999999999988887442111 11
Q ss_pred eeEEeeecchhhHHHHhhhccccccCCcccccccccccCCCCC-CCCceEEEEEeeccee-Ee-eeecc--cCCCCCcc-
Q 000722 87 VKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPS-TKGRHFLVICCVNKAI-FL-DLVTM--RGRDIPKQ- 160 (1331)
Q Consensus 87 V~sVaf~DgtIrvWdl~tg~~l~~~~~~~~~~~~~~V~svafs-pdg~~lLasgs~d~iI-vw-Dl~t~--~~~~i~~~- 160 (1331)
|+.+.+- .+...++.+|+.|++| +| |+.+. +.+.+.-.
T Consensus 1112 ------------------------------------Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~ 1155 (1387)
T KOG1517|consen 1112 ------------------------------------VSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWS 1155 (1387)
T ss_pred ------------------------------------cceeeeecccchhheeeeccCceEEEecccccccCCceeEEeec
Confidence 2222221 1222367777777777 66 55543 11111000
Q ss_pred --c----cccccceeeehhhcccCCCcceEeecCCCceeeeeehhhheeehhhcCCCccchhhhhHhhhccccEEEeecC
Q 000722 161 --E----LDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGG 234 (1331)
Q Consensus 161 --~----~h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs 234 (1331)
. +..+.=.-++|. ....+|+++++-..|||||.....++..+..+....|+++. .....|++|+.|.
T Consensus 1156 ~Ls~~~~~~r~~~~v~dWq-----Q~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS--~~~~~gn~i~AGf 1228 (1387)
T KOG1517|consen 1156 SLSDQLPGARGTGLVVDWQ-----QQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALS--ADLVHGNIIAAGF 1228 (1387)
T ss_pred cccccCccCCCCCeeeehh-----hhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeec--ccccCCceEEEee
Confidence 1 111111346773 33344555556889999999988888887767778888886 2456689999999
Q ss_pred CCceEEEEeccCCCccccccccceeeeccCc--EEEEEechhccCCCcEEEeecCceeEeeeccchhhhcccCCCCcccc
Q 000722 235 SDGLLILWSADHGQDSRELVPKLSLKAHDGG--VVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLAC 312 (1331)
Q Consensus 235 ~DgtIrVWDl~tg~~~~~~~~~~~l~gH~~~--V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~ 312 (1331)
.||.|++||.+....- ......+.|+.. |..+.+.+. +-..|++|+.||.|++||++... ..++ .+...
T Consensus 1229 aDGsvRvyD~R~a~~d---s~v~~~R~h~~~~~Iv~~slq~~--G~~elvSgs~~G~I~~~DlR~~~-~e~~---~~iv~ 1299 (1387)
T KOG1517|consen 1229 ADGSVRVYDRRMAPPD---SLVCVYREHNDVEPIVHLSLQRQ--GLGELVSGSQDGDIQLLDLRMSS-KETF---LTIVA 1299 (1387)
T ss_pred cCCceEEeecccCCcc---ccceeecccCCcccceeEEeecC--CCcceeeeccCCeEEEEecccCc-cccc---ceeee
Confidence 9999999999875431 133446778887 999999982 33469999999999999999742 2221 11223
Q ss_pred cc--c-ccccCCCCCCCceeeeeecc--eeeeeecCccccccccccccccCCCccccccccceEEEEEEeccCCccEeee
Q 000722 313 HS--V-ASWCHPRAPNLDILTCVKDS--HIWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVAT 387 (1331)
Q Consensus 313 H~--~-~V~svafspdg~lLa~s~Dg--~IWdl~~~~~~~l~~~~~~~~~~~~~~~l~~h~~~~I~~la~sp~~~~lLAt 387 (1331)
|. + ..+++..|++..++++|.-+ .||++......... .-..|-+.....+.|++||| ...++|+
T Consensus 1300 ~~~yGs~lTal~VH~hapiiAsGs~q~ikIy~~~G~~l~~~k----------~n~~F~~q~~gs~scL~FHP-~~~llAa 1368 (1387)
T KOG1517|consen 1300 HWEYGSALTALTVHEHAPIIASGSAQLIKIYSLSGEQLNIIK----------YNPGFMGQRIGSVSCLAFHP-HRLLLAA 1368 (1387)
T ss_pred ccccCccceeeeeccCCCeeeecCcceEEEEecChhhhcccc----------cCcccccCcCCCcceeeecc-hhHhhhh
Confidence 32 2 47899999999999776545 38998743221111 11123333334789999999 4777999
Q ss_pred cceeEEEEeecCCC
Q 000722 388 GTNVGVIISEFDPR 401 (1331)
Q Consensus 388 Gs~DG~Il~VWDlr 401 (1331)
|+.|.+| .||...
T Consensus 1369 G~~Ds~V-~iYs~~ 1381 (1387)
T KOG1517|consen 1369 GSADSTV-SIYSCE 1381 (1387)
T ss_pred ccCCceE-EEeecC
Confidence 9999998 788754
No 152
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.62 E-value=6.7e-15 Score=160.44 Aligned_cols=278 Identities=13% Similarity=0.165 Sum_probs=186.4
Q ss_pred ceeeehhhcccCCCcceEeecCCCceeeeeehhhheeehhhcCCCccchhhhhHhhhccccEEEeecCCCceEEEEeccC
Q 000722 167 LVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADH 246 (1331)
Q Consensus 167 V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrVWDl~t 246 (1331)
..|+.| ++.|.+|++|+.||.|.|||+.+...-+.+. +|..+|+|++| +++|++|+|+|.|..|.+||+..
T Consensus 26 a~~~~F-----s~~G~~lAvGc~nG~vvI~D~~T~~iar~ls-aH~~pi~sl~W---S~dgr~LltsS~D~si~lwDl~~ 96 (405)
T KOG1273|consen 26 AECCQF-----SRWGDYLAVGCANGRVVIYDFDTFRIARMLS-AHVRPITSLCW---SRDGRKLLTSSRDWSIKLWDLLK 96 (405)
T ss_pred cceEEe-----ccCcceeeeeccCCcEEEEEccccchhhhhh-ccccceeEEEe---cCCCCEeeeecCCceeEEEeccC
Confidence 788999 7899999999999999999999988777776 99999999995 99999999999999999999999
Q ss_pred CCccccccccceeeeccCcEEEEEechhccCCCcEEEeecCceeEeeeccchhhhcccCCCCcccccccccccCCCCCCC
Q 000722 247 GQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNL 326 (1331)
Q Consensus 247 g~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg 326 (1331)
|.+++.+ ....+|+.+.|||. +.+..+..-.+..-.+-++...+ ++.-+...-......-.+..|++.|
T Consensus 97 gs~l~ri-------rf~spv~~~q~hp~--k~n~~va~~~~~sp~vi~~s~~~--h~~Lp~d~d~dln~sas~~~fdr~g 165 (405)
T KOG1273|consen 97 GSPLKRI-------RFDSPVWGAQWHPR--KRNKCVATIMEESPVVIDFSDPK--HSVLPKDDDGDLNSSASHGVFDRRG 165 (405)
T ss_pred CCceeEE-------EccCccceeeeccc--cCCeEEEEEecCCcEEEEecCCc--eeeccCCCccccccccccccccCCC
Confidence 9876642 25678999999993 44444444445445555554422 2221111111111122345688889
Q ss_pred cee-eeeecce--eeeeecCccccccccccccccCCCccccccccceEEEEEEeccCCccEeeecceeEEEEeecCCCCC
Q 000722 327 DIL-TCVKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPRSL 403 (1331)
Q Consensus 327 ~lL-a~s~Dg~--IWdl~~~~~~~l~~~~~~~~~~~~~~~l~~h~~~~I~~la~sp~~~~lLAtGs~DG~Il~VWDlr~~ 403 (1331)
+++ +|...|. +++..+. .++..++......|..+.++. ++..+++-+.|.+| |.|++++.
T Consensus 166 ~yIitGtsKGkllv~~a~t~---------------e~vas~rits~~~IK~I~~s~-~g~~liiNtsDRvI-R~ye~~di 228 (405)
T KOG1273|consen 166 KYIITGTSKGKLLVYDAETL---------------ECVASFRITSVQAIKQIIVSR-KGRFLIINTSDRVI-RTYEISDI 228 (405)
T ss_pred CEEEEecCcceEEEEecchh---------------eeeeeeeechheeeeEEEEec-cCcEEEEecCCceE-EEEehhhh
Confidence 866 6667776 5666542 234444444423788889988 67789999999998 89887632
Q ss_pred CCCCCCCCCCCCCCcceEEEeeeeeeeeeeecccCCCCCCCCCCCccccCCCCCCCCchhhHhhhccccccccCCCceeE
Q 000722 404 PAVAPLPTPSGSRDHSAVYIVERELKLVNFQLSSAANPSLGNNGSLSETGRLKGDLPDALQIKQIKKHISTPVPHDSYSI 483 (1331)
Q Consensus 404 p~i~~~~t~s~~~~~s~~~~~~~~l~l~~fq~~~~~~~~lg~~~~ls~~G~~~~~~~e~l~v~~~~r~i~t~~~~e~~s~ 483 (1331)
.... .+|. .+ ..+..+.+++...| .+
T Consensus 229 ~~~~-------------------------------------------r~~e-----~e---~~~K~qDvVNk~~W---k~ 254 (405)
T KOG1273|consen 229 DDEG-------------------------------------------RDGE-----VE---PEHKLQDVVNKLQW---KK 254 (405)
T ss_pred cccC-------------------------------------------ccCC-----cC---hhHHHHHHHhhhhh---hh
Confidence 1100 0111 01 01111122333333 36
Q ss_pred EEEeeCCcEEEEEcCCCceeeEEeecceeEee--cCc----ceeeehhcchhhHHHhh
Q 000722 484 LSVSSSGKYLAVVWPDIPYFSVYKVSDWSIVD--SGS----ARLLAWDTCRDRFAILE 535 (1331)
Q Consensus 484 ls~SpdGrylaVv~~~~g~y~Iy~i~~~~~i~--~G~----~~~~aWs~~~~~fAvl~ 535 (1331)
++||.+|.|++..+...-.++||.-+...++. .|. ..++.|+|-+...+-+.
T Consensus 255 ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si~ 312 (405)
T KOG1273|consen 255 CCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASIA 312 (405)
T ss_pred eeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeecc
Confidence 89999999997666677788899876554433 332 46888998776555553
No 153
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.61 E-value=2e-14 Score=167.10 Aligned_cols=150 Identities=17% Similarity=0.261 Sum_probs=114.6
Q ss_pred cEEEEEechhccCCCcEEEeecCceeEeeeccchhh-hcccCCCCcccccccccccCCCCCCCc--eeeeeecce--eee
Q 000722 265 GVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKE-LRRIKPVPKLACHSVASWCHPRAPNLD--ILTCVKDSH--IWA 339 (1331)
Q Consensus 265 ~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~-l~~~~~~~~l~~H~~~V~svafspdg~--lLa~s~Dg~--IWd 339 (1331)
.|+.+.|.|. |...|+++++||.|++|.+..+.. -....+...+..|...|+++.|||-.. +++++.|.+ +||
T Consensus 629 ~vtDl~WdPF--D~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWD 706 (1012)
T KOG1445|consen 629 LVTDLHWDPF--DDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWD 706 (1012)
T ss_pred eeeecccCCC--ChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeee
Confidence 4688899995 788999999999999999976542 223345556899999999999999643 446788876 899
Q ss_pred eecCccccccccccccccCCCccccccccceEEEEEEeccCCccEeeecceeEEEEeecCCCCCC-CCCCCCCCCCCCCc
Q 000722 340 IEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPRSLP-AVAPLPTPSGSRDH 418 (1331)
Q Consensus 340 l~~~~~~~l~~~~~~~~~~~~~~~l~~h~~~~I~~la~sp~~~~lLAtGs~DG~Il~VWDlr~~p-~i~~~~t~s~~~~~ 418 (1331)
+.+.. ....+.+|.+ .|..++||| ++.++|+.+.||.+ +||..++.+ ++..-+.+.+.+..
T Consensus 707 l~~~~---------------~~~~l~gHtd-qIf~~AWSp-dGr~~AtVcKDg~~-rVy~Prs~e~pv~Eg~gpvgtRgA 768 (1012)
T KOG1445|consen 707 LANAK---------------LYSRLVGHTD-QIFGIAWSP-DGRRIATVCKDGTL-RVYEPRSREQPVYEGKGPVGTRGA 768 (1012)
T ss_pred hhhhh---------------hhheeccCcC-ceeEEEECC-CCcceeeeecCceE-EEeCCCCCCCccccCCCCccCcce
Confidence 98752 2335778988 899999999 68889999999998 999998754 34444555566666
Q ss_pred ceEEEeeeee-eeeeee
Q 000722 419 SAVYIVEREL-KLVNFQ 434 (1331)
Q Consensus 419 s~~~~~~~~l-~l~~fq 434 (1331)
.+.|+.++.+ -...|.
T Consensus 769 Ri~wacdgr~viv~Gfd 785 (1012)
T KOG1445|consen 769 RILWACDGRIVIVVGFD 785 (1012)
T ss_pred eEEEEecCcEEEEeccc
Confidence 7788888774 334443
No 154
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.61 E-value=4.6e-15 Score=162.78 Aligned_cols=302 Identities=10% Similarity=0.125 Sum_probs=201.5
Q ss_pred cccccCCCcEEEEEeec----CCc-eeEeecCCCceeeeccccceE---EeeeccCCcccchhhhhhhhhhcccccccCC
Q 000722 5 KAFRPTNDKIVKIQLHP----THP-WLVTADASDHVSVWNWEHRQV---IYELKAGGVDQRRLVGAKLEKLAEGELEHKG 76 (1331)
Q Consensus 5 ~~L~gHs~~V~~lafSP----dg~-~LaSgs~DGtV~VWD~~tg~~---i~s~~~~~~~~i~~vspdg~~Lasgs~d~~g 76 (1331)
+..++|+.+|..++|.+ +.. .++|. ...++.++......- ++++...+.++.... .+...+..+
T Consensus 32 ~l~ed~~~~I~gv~fN~~~~~~e~~vfatv-G~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfyt------csw~yd~~~- 103 (385)
T KOG1034|consen 32 HLKEDHNKPIFGVAFNSFLGCDEPQVFATV-GGNRVTIYECPGDGGIRLLQSYADEDHDESFYT------CSWSYDSNT- 103 (385)
T ss_pred ehhccCCCccceeeeehhcCCCCCceEEEe-CCcEEEEEEECCccceeeeeeccCCCCCcceEE------EEEEecCCC-
Confidence 44678999999999985 233 44554 455788888764432 333322211111100 011111111
Q ss_pred CCcccccCCceeEEeeecchhhHHHHhhhccccccCCcccccccccccCCCCCCCCceEEEEEeeccee-EeeeecccCC
Q 000722 77 KPTEAMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGR 155 (1331)
Q Consensus 77 ~~l~~l~gg~V~sVaf~DgtIrvWdl~tg~~l~~~~~~~~~~~~~~V~svafspdg~~lLasgs~d~iI-vwDl~t~~~~ 155 (1331)
+.+...++-.-|.|||.|+.++++. ....+| ...|+.+.|+|+..+++++++.|..+ +||++++.+.
T Consensus 104 -------~~p~la~~G~~GvIrVid~~~~~~~----~~~~gh-G~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv 171 (385)
T KOG1034|consen 104 -------GNPFLAAGGYLGVIRVIDVVSGQCS----KNYRGH-GGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCV 171 (385)
T ss_pred -------CCeeEEeecceeEEEEEecchhhhc----cceecc-CccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEE
Confidence 2333333335788999999888774 455555 88899999999999999999999988 7899987654
Q ss_pred CC-CccccccccceeeehhhcccCCCcceEeecCCCceeeeeehhhhe------ee-------------------hh--h
Q 000722 156 DI-PKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWK------LV-------------------RR--Y 207 (1331)
Q Consensus 156 ~i-~~~~~h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~~------~v-------------------~~--~ 207 (1331)
.+ .-..+|.+.|.++.| +.+|.+|++++.|.+|++|++...+ +. .. .
T Consensus 172 ~VfGG~egHrdeVLSvD~-----~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst 246 (385)
T KOG1034|consen 172 AVFGGVEGHRDEVLSVDF-----SLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFST 246 (385)
T ss_pred EEecccccccCcEEEEEE-----cCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccc
Confidence 32 223789999999999 7899999999999999999997321 00 11 1
Q ss_pred cCCCccchhhhhHhhhccccEEEeecCCCceEEEEecc-CCCccccccc-------cceeeeccCcEEEEE--echhccC
Q 000722 208 TGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSAD-HGQDSRELVP-------KLSLKAHDGGVVAVE--LSRVMGG 277 (1331)
Q Consensus 208 ~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrVWDl~-tg~~~~~~~~-------~~~l~gH~~~V~sva--fsp~~~d 277 (1331)
..-|..+|-|+.|| |++++|-|-++.|..|... -++.++...+ ...+.-....|+-+. |.| -
T Consensus 247 ~diHrnyVDCvrw~-----gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~---~ 318 (385)
T KOG1034|consen 247 TDIHRNYVDCVRWF-----GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDP---W 318 (385)
T ss_pred cccccchHHHHHHH-----hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecH---H
Confidence 23599999999997 6899999999999999872 2222111100 111222233455444 455 6
Q ss_pred CCcEEEeecCceeEeeeccchhhhcccCCCCcccccccccccCCCCCCCcee-eeeecceeeeee
Q 000722 278 SPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDIL-TCVKDSHIWAIE 341 (1331)
Q Consensus 278 g~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg~lL-a~s~Dg~IWdl~ 341 (1331)
++.|+.|...|.|.+||++...+...-. .........|...+|+.|+.+| ...+|++||.++
T Consensus 319 ~~~la~gnq~g~v~vwdL~~~ep~~~tt--l~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwd 381 (385)
T KOG1034|consen 319 QKMLALGNQSGKVYVWDLDNNEPPKCTT--LTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWD 381 (385)
T ss_pred HHHHhhccCCCcEEEEECCCCCCccCce--EEeccccceeeeeeecccCcEEEEEeCCCcEEEEE
Confidence 7899999999999999998766531100 0011223467789999999966 678899998776
No 155
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.61 E-value=4.1e-15 Score=168.84 Aligned_cols=236 Identities=16% Similarity=0.187 Sum_probs=175.1
Q ss_pred eEEEEEeeccee-EeeeecccC-------------------CCCCccccccccceeeehhhcccCCCcceEeecCCCcee
Q 000722 134 HFLVICCVNKAI-FLDLVTMRG-------------------RDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVI 193 (1331)
Q Consensus 134 ~lLasgs~d~iI-vwDl~t~~~-------------------~~i~~~~~h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtI 193 (1331)
++++.|+.+..| +||+.-... +.-....+|.+.|..+.|.- -..+.|++||.|.+|
T Consensus 193 NyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~----~~~nVLaSgsaD~TV 268 (463)
T KOG0270|consen 193 NYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNR----NFRNVLASGSADKTV 268 (463)
T ss_pred ceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhcc----ccceeEEecCCCceE
Confidence 399999999988 997642110 01111236788888888842 235689999999999
Q ss_pred eeeehhhheeehhhcCCCccchhhhhHhhhccccEEEeecCCCceEEEEeccCCCccccccccceeeeccCcEEEEEech
Q 000722 194 RVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSR 273 (1331)
Q Consensus 194 rlWDl~t~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp 273 (1331)
++||+.++++..++. .|...|.++.|+ +.....|++||.|++|.+.|.+....... .-.-.+.|-.++|+|
T Consensus 269 ~lWD~~~g~p~~s~~-~~~k~Vq~l~wh--~~~p~~LLsGs~D~~V~l~D~R~~~~s~~------~wk~~g~VEkv~w~~ 339 (463)
T KOG0270|consen 269 KLWDVDTGKPKSSIT-HHGKKVQTLEWH--PYEPSVLLSGSYDGTVALKDCRDPSNSGK------EWKFDGEVEKVAWDP 339 (463)
T ss_pred EEEEcCCCCcceehh-hcCCceeEEEec--CCCceEEEeccccceEEeeeccCccccCc------eEEeccceEEEEecC
Confidence 999999999999997 899999999984 66678999999999999999985332211 112456799999999
Q ss_pred hccCCCcEEEeecCceeEeeeccch-hhhcccCCCCcccccccccccCCCCCCCc--eeeeeecce--eeeeecCccccc
Q 000722 274 VMGGSPQLITIGADKTLAIWDTVSF-KELRRIKPVPKLACHSVASWCHPRAPNLD--ILTCVKDSH--IWAIEHPTYSAL 348 (1331)
Q Consensus 274 ~~~dg~~LaSgs~Dg~IrIWDl~t~-~~l~~~~~~~~l~~H~~~V~svafspdg~--lLa~s~Dg~--IWdl~~~~~~~l 348 (1331)
. ....++++.+||+|+-+|++.. +++.+ +..|...|++++++..-. +.++|.|+. +|++........
T Consensus 340 ~--se~~f~~~tddG~v~~~D~R~~~~~vwt------~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v 411 (463)
T KOG0270|consen 340 H--SENSFFVSTDDGTVYYFDIRNPGKPVWT------LKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSV 411 (463)
T ss_pred C--CceeEEEecCCceEEeeecCCCCCceeE------EEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCccc
Confidence 4 6678889999999999999875 44444 889999999999998754 446788885 899874311000
Q ss_pred cccccccccCCCccccccccceEEEEEEeccCCccEeeecceeEEEEeecCCCCCCC
Q 000722 349 TRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPRSLPA 405 (1331)
Q Consensus 349 ~~~~~~~~~~~~~~~l~~h~~~~I~~la~sp~~~~lLAtGs~DG~Il~VWDlr~~p~ 405 (1331)
. ...+ .-. +..|.++.|+....++.|+..+.+ +|||+....+
T Consensus 412 ~-----------~~~~--~~~-rl~c~~~~~~~a~~la~GG~k~~~-~vwd~~~~~~ 453 (463)
T KOG0270|consen 412 K-----------EHSF--KLG-RLHCFALDPDVAFTLAFGGEKAVL-RVWDIFTNSP 453 (463)
T ss_pred c-----------cccc--ccc-ceeecccCCCcceEEEecCccceE-EEeecccChh
Confidence 0 0000 112 578899999888999999999965 9999875433
No 156
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.61 E-value=5.8e-15 Score=173.25 Aligned_cols=255 Identities=17% Similarity=0.196 Sum_probs=175.2
Q ss_pred cccccccCCCcEEEEEeecCCceeEeecCCCceeeeccccceEEeeeccCCcccchhhhhhhhhhcccccccCCCCcccc
Q 000722 3 RLKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAM 82 (1331)
Q Consensus 3 ~l~~L~gHs~~V~~lafSPdg~~LaSgs~DGtV~VWD~~tg~~i~s~~~~~~~~i~~vspdg~~Lasgs~d~~g~~l~~l 82 (1331)
+++.+..|.+.|..+.|-|....|++++.|.++++||+.+++++..-.
T Consensus 92 ~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~-------------------------------- 139 (720)
T KOG0321|consen 92 QLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRL-------------------------------- 139 (720)
T ss_pred hhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeeccee--------------------------------
Confidence 356778999999999999966799999999999999998866554310
Q ss_pred cCCceeEEeeecchhhHHHHhhhccccccCCcccccccccccCCCCCCCCceEEEEEeeccee-Eeeeeccc--------
Q 000722 83 RGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMR-------- 153 (1331)
Q Consensus 83 ~gg~V~sVaf~DgtIrvWdl~tg~~l~~~~~~~~~~~~~~V~svafspdg~~lLasgs~d~iI-vwDl~t~~-------- 153 (1331)
..+| ...|.+++|++..+.+|++|+.|+.+ +||..-..
T Consensus 140 --------------------------------~~GH-~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~ 186 (720)
T KOG0321|consen 140 --------------------------------NLGH-TGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFD 186 (720)
T ss_pred --------------------------------eccc-ccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHh
Confidence 1111 44566788888888788888888766 78764211
Q ss_pred -----------------CCCCCccccccc----cceeeehhhcccCCCcceEeecCC-Cceeeeeehhhheeehhhc---
Q 000722 154 -----------------GRDIPKQELDNK----SLVCMEFLSRSAVGDVPLVAFGSS-DGVIRVLSMISWKLVRRYT--- 208 (1331)
Q Consensus 154 -----------------~~~i~~~~~h~~----~V~~Vaf~P~s~Spdg~~LasGs~-DGtIrlWDl~t~~~v~~~~--- 208 (1331)
.+.+.....+.. .|+.+.| .|...|++++. |+.|+|||++.........
T Consensus 187 ~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~f------kDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~ 260 (720)
T KOG0321|consen 187 NRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLF------KDESTLASAGAADSTIKVWDLRKNYTAYRQEPRG 260 (720)
T ss_pred hhhhccccCCCCCCchhhccccccccccCceeeeeEEEEE------eccceeeeccCCCcceEEEeecccccccccCCCc
Confidence 001111222322 4555666 57888999887 9999999998654332211
Q ss_pred ----CCC---ccchhhhhHhhhccccEEEeecCCCceEEEEeccCCCccccccccceeeeccCcEE--EEEechhccCCC
Q 000722 209 ----GGH---KGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVV--AVELSRVMGGSP 279 (1331)
Q Consensus 209 ----~gH---~~~V~~vawf~~spdg~lLaSgs~DgtIrVWDl~tg~~~~~~~~~~~l~gH~~~V~--svafsp~~~dg~ 279 (1331)
.-| ...+.++. ....|.+|...+.|+.|.+||+.+-.. .+...+.+|...-. .-..+| ++.
T Consensus 261 ~~~~~t~skrs~G~~nL~---lDssGt~L~AsCtD~sIy~ynm~s~s~----sP~~~~sg~~~~sf~vks~lSp---d~~ 330 (720)
T KOG0321|consen 261 SDKYPTHSKRSVGQVNLI---LDSSGTYLFASCTDNSIYFYNMRSLSI----SPVAEFSGKLNSSFYVKSELSP---DDC 330 (720)
T ss_pred ccCccCcccceeeeEEEE---ecCCCCeEEEEecCCcEEEEeccccCc----CchhhccCcccceeeeeeecCC---CCc
Confidence 023 33455554 455566666666699999999987542 23444444432211 123455 889
Q ss_pred cEEEeecCceeEeeeccchhhhcccCCCCcccccccccccCCCCCC--Cceeeeeecce--eeeeecC
Q 000722 280 QLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPN--LDILTCVKDSH--IWAIEHP 343 (1331)
Q Consensus 280 ~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspd--g~lLa~s~Dg~--IWdl~~~ 343 (1331)
++++|+.|....+|.+.+...- ...+.+|...|++++|.|. ..+++|++|.+ ||++..+
T Consensus 331 ~l~SgSsd~~ayiw~vs~~e~~-----~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 331 SLLSGSSDEQAYIWVVSSPEAP-----PALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred eEeccCCCcceeeeeecCccCC-----hhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 9999999999999999875532 2236899999999999875 56899988885 8999653
No 157
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.61 E-value=5.6e-15 Score=179.67 Aligned_cols=243 Identities=14% Similarity=0.113 Sum_probs=183.6
Q ss_pred cccccCCCCCCCCceEEEEEeeccee-EeeeecccCCCCCccccccccceeeehhhcccCCCcceEeecCCCceeeeeeh
Q 000722 120 TSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSM 198 (1331)
Q Consensus 120 ~~~V~svafspdg~~lLasgs~d~iI-vwDl~t~~~~~i~~~~~h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl 198 (1331)
....+.++|.|+|. ++++|+.|+.+ .|+..... ..-.+...+...|.+++. ++.+|++|+.+++|.+|..
T Consensus 13 t~G~t~i~~d~~ge-fi~tcgsdg~ir~~~~~sd~-e~P~ti~~~g~~v~~ia~-------~s~~f~~~s~~~tv~~y~f 83 (933)
T KOG1274|consen 13 TGGLTLICYDPDGE-FICTCGSDGDIRKWKTNSDE-EEPETIDISGELVSSIAC-------YSNHFLTGSEQNTVLRYKF 83 (933)
T ss_pred cCceEEEEEcCCCC-EEEEecCCCceEEeecCCcc-cCCchhhccCceeEEEee-------cccceEEeeccceEEEeeC
Confidence 44567789999999 77777777776 78554431 111223337888999888 5779999999999999999
Q ss_pred hhheeehhhcCCCccchhhhhHhhhccccEEEeecCCCceEEEEeccCCCccccccccceeeeccCcEEEEEechhccCC
Q 000722 199 ISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGS 278 (1331)
Q Consensus 199 ~t~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg 278 (1331)
.+++.--.+. ..+-++.+++ ++-+|.+++.||.|-.|++-++.+... ...+.+|+.+|.++.|+| .+
T Consensus 84 ps~~~~~iL~-Rftlp~r~~~---v~g~g~~iaagsdD~~vK~~~~~D~s~------~~~lrgh~apVl~l~~~p---~~ 150 (933)
T KOG1274|consen 84 PSGEEDTILA-RFTLPIRDLA---VSGSGKMIAAGSDDTAVKLLNLDDSSQ------EKVLRGHDAPVLQLSYDP---KG 150 (933)
T ss_pred CCCCccceee-eeeccceEEE---EecCCcEEEeecCceeEEEEeccccch------heeecccCCceeeeeEcC---CC
Confidence 8765543332 4557788887 899999999999999999999987764 345899999999999999 89
Q ss_pred CcEEEeecCceeEeeeccchhhhcccCCCCccccc--ccccccCCCCCC-Cceeeeeecce--eeeeecCcccccccccc
Q 000722 279 PQLITIGADKTLAIWDTVSFKELRRIKPVPKLACH--SVASWCHPRAPN-LDILTCVKDSH--IWAIEHPTYSALTRPLC 353 (1331)
Q Consensus 279 ~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H--~~~V~svafspd-g~lLa~s~Dg~--IWdl~~~~~~~l~~~~~ 353 (1331)
.+|++.+-||.|++||+.++.+..++..+.....- ...+..++|+|+ |++++.+.|+. +++....
T Consensus 151 ~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~w---------- 220 (933)
T KOG1274|consen 151 NFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGW---------- 220 (933)
T ss_pred CEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCc----------
Confidence 99999999999999999999988887655433222 345568899999 55777777775 4554432
Q ss_pred ccccCCCcccccc--ccceEEEEEEeccCCccEeeecceeEEEEeecCCCC
Q 000722 354 ELSSLVPPQVLAH--HKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPRS 402 (1331)
Q Consensus 354 ~~~~~~~~~~l~~--h~~~~I~~la~sp~~~~lLAtGs~DG~Il~VWDlr~ 402 (1331)
.....++. +.. .+.+++|+| .|.+||+++-||.| .|||..+
T Consensus 221 -----e~~f~Lr~~~~ss-~~~~~~wsP-nG~YiAAs~~~g~I-~vWnv~t 263 (933)
T KOG1274|consen 221 -----ELQFKLRDKLSSS-KFSDLQWSP-NGKYIAASTLDGQI-LVWNVDT 263 (933)
T ss_pred -----eeheeeccccccc-ceEEEEEcC-CCcEEeeeccCCcE-EEEeccc
Confidence 11122222 223 499999999 58889999999999 5999873
No 158
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.60 E-value=8.6e-15 Score=159.57 Aligned_cols=287 Identities=14% Similarity=0.138 Sum_probs=187.0
Q ss_pred EEEEEeecCCceeEeecCCCceeeeccccceEEeeeccCCcccchhhhhhhhhhcccccccCCCCcccccCCceeEEeee
Q 000722 14 IVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRGGSVKQVNFY 93 (1331)
Q Consensus 14 V~~lafSPdg~~LaSgs~DGtV~VWD~~tg~~i~s~~~~~~~~i~~vspdg~~Lasgs~d~~g~~l~~l~gg~V~sVaf~ 93 (1331)
-.|+.|++.|.+||+|+.||.|.|||+.|...-+.+.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~ls------------------------------------------- 62 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLS------------------------------------------- 62 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhh-------------------------------------------
Confidence 7899999999999999999999999998744222222
Q ss_pred cchhhHHHHhhhccccccCCcccccccccccCCCCCCCCceEEEEEeeccee-EeeeecccCCCCCccccccccceeeeh
Q 000722 94 DDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQELDNKSLVCMEF 172 (1331)
Q Consensus 94 DgtIrvWdl~tg~~l~~~~~~~~~~~~~~V~svafspdg~~lLasgs~d~iI-vwDl~t~~~~~i~~~~~h~~~V~~Vaf 172 (1331)
. |..+|.+++||++|+ +|++++.|..+ .||+..+.. +.. ..-..+|..+.|
T Consensus 63 -----------------------a-H~~pi~sl~WS~dgr-~LltsS~D~si~lwDl~~gs~--l~r-irf~spv~~~q~ 114 (405)
T KOG1273|consen 63 -----------------------A-HVRPITSLCWSRDGR-KLLTSSRDWSIKLWDLLKGSP--LKR-IRFDSPVWGAQW 114 (405)
T ss_pred -----------------------c-cccceeEEEecCCCC-EeeeecCCceeEEEeccCCCc--eeE-EEccCccceeee
Confidence 1 145688899999998 77777777666 899988652 222 233679999999
Q ss_pred hhcccCCCcceEeecCCCceeeeeehhhh--eeehhhcCCCccchhhhhHhhhccccEEEeecCCCceEEEEeccCCCcc
Q 000722 173 LSRSAVGDVPLVAFGSSDGVIRVLSMISW--KLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDS 250 (1331)
Q Consensus 173 ~P~s~Spdg~~LasGs~DGtIrlWDl~t~--~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrVWDl~tg~~~ 250 (1331)
||. .....+++- .+..-.+.++..+ .++..-..+....+-+.- .|.+.|+++++|...|.+.++|..+-+++
T Consensus 115 hp~---k~n~~va~~-~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~--~fdr~g~yIitGtsKGkllv~~a~t~e~v 188 (405)
T KOG1273|consen 115 HPR---KRNKCVATI-MEESPVVIDFSDPKHSVLPKDDDGDLNSSASHG--VFDRRGKYIITGTSKGKLLVYDAETLECV 188 (405)
T ss_pred ccc---cCCeEEEEE-ecCCcEEEEecCCceeeccCCCccccccccccc--cccCCCCEEEEecCcceEEEEecchheee
Confidence 883 334444443 3333334444332 222111112222222211 27899999999999999999999998876
Q ss_pred ccccccceeeecc-CcEEEEEechhccCCCcEEEeecCceeEeeeccchhhhc---ccCCCCccccc--ccccccCCCCC
Q 000722 251 RELVPKLSLKAHD-GGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELR---RIKPVPKLACH--SVASWCHPRAP 324 (1331)
Q Consensus 251 ~~~~~~~~l~gH~-~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~---~~~~~~~l~~H--~~~V~svafsp 324 (1331)
..+ +-.. ..|..+.|+. .++.|+.-+.|+.||.|+++.-.... ...+.+++..- .-.=.+++|+.
T Consensus 189 as~------rits~~~IK~I~~s~---~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~ 259 (405)
T KOG1273|consen 189 ASF------RITSVQAIKQIIVSR---KGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSG 259 (405)
T ss_pred eee------eechheeeeEEEEec---cCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecC
Confidence 542 2222 5688899998 89999999999999999987322110 11111111111 01123788999
Q ss_pred CCceeeeeecc----eeeeeecCccccccccccccccCCCccccccccceEEEEEEeccCCccEeeecceeEEEEeecCC
Q 000722 325 NLDILTCVKDS----HIWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDP 400 (1331)
Q Consensus 325 dg~lLa~s~Dg----~IWdl~~~~~~~l~~~~~~~~~~~~~~~l~~h~~~~I~~la~sp~~~~lLAtGs~DG~Il~VWDl 400 (1331)
+|.++.++... .||.-..+. .+..+.+..+.....+.|+|..+. +++- ..|+| ++|..
T Consensus 260 dgeYv~a~s~~aHaLYIWE~~~Gs---------------LVKILhG~kgE~l~DV~whp~rp~-i~si-~sg~v-~iw~~ 321 (405)
T KOG1273|consen 260 DGEYVCAGSARAHALYIWEKSIGS---------------LVKILHGTKGEELLDVNWHPVRPI-IASI-ASGVV-YIWAV 321 (405)
T ss_pred CccEEEeccccceeEEEEecCCcc---------------eeeeecCCchhheeecccccceee-eeec-cCCce-EEEEe
Confidence 99998665443 278776653 244566666557888999996444 4444 67777 89986
Q ss_pred CCCC
Q 000722 401 RSLP 404 (1331)
Q Consensus 401 r~~p 404 (1331)
...+
T Consensus 322 ~~~e 325 (405)
T KOG1273|consen 322 VQVE 325 (405)
T ss_pred eccc
Confidence 5443
No 159
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.59 E-value=2.8e-14 Score=162.55 Aligned_cols=237 Identities=13% Similarity=0.157 Sum_probs=172.1
Q ss_pred cccccCCCCCCCCceEEEEEeeccee-EeeeecccCCCCCccccccccceeeehhhcccCCCcc-eEeecCCCceeeeee
Q 000722 120 TSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVP-LVAFGSSDGVIRVLS 197 (1331)
Q Consensus 120 ~~~V~svafspdg~~lLasgs~d~iI-vwDl~t~~~~~i~~~~~h~~~V~~Vaf~P~s~Spdg~-~LasGs~DGtIrlWD 197 (1331)
.+.|+++.|||..+ ++.+++.|+.+ +|.+.......+........+|.+..| .|+|. .+++++....++.||
T Consensus 213 ~~~I~sv~FHp~~p-lllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f-----~p~G~~~i~~s~rrky~ysyD 286 (514)
T KOG2055|consen 213 HGGITSVQFHPTAP-LLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEF-----APNGHSVIFTSGRRKYLYSYD 286 (514)
T ss_pred cCCceEEEecCCCc-eEEEecCCCcEEEEEecCccChhheeeeeccCccceeee-----cCCCceEEEecccceEEEEee
Confidence 46799999999987 88888888877 454443323355566677889999999 56888 899999999999999
Q ss_pred hhhheeehhh-cCCCccchhhhhHhhhccccEEEeecCCCceEEEEeccCCCccccccccceeeeccCcEEEEEechhcc
Q 000722 198 MISWKLVRRY-TGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMG 276 (1331)
Q Consensus 198 l~t~~~v~~~-~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~ 276 (1331)
+.+.+..+.- ..++... .+.-|..++++++|+..+..|.|.+....++..+..+ + -.+.|..++|+.
T Consensus 287 le~ak~~k~~~~~g~e~~--~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~------K-ieG~v~~~~fsS--- 354 (514)
T KOG2055|consen 287 LETAKVTKLKPPYGVEEK--SMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSF------K-IEGVVSDFTFSS--- 354 (514)
T ss_pred ccccccccccCCCCcccc--hhheeEecCCCCeEEEcccCceEEeehhhhhhhhhee------e-eccEEeeEEEec---
Confidence 9987654422 1245432 2333457899999999999999999999998866542 2 345689999997
Q ss_pred CCCcEEEeecCceeEeeeccchhhhcccCCCCcccccccccccCCCCCCCceeeeeecce---eeeeecCcccccccccc
Q 000722 277 GSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDILTCVKDSH---IWAIEHPTYSALTRPLC 353 (1331)
Q Consensus 277 dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg~lLa~s~Dg~---IWdl~~~~~~~l~~~~~ 353 (1331)
++..|+.++.+|.|.+||++...+++++..-..+ .-++++.++++.++++|.|.- |||.++-.
T Consensus 355 dsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v-----~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~--------- 420 (514)
T KOG2055|consen 355 DSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSV-----HGTSLCISLNGSYLATGSDSGIVNIYDGNSCF--------- 420 (514)
T ss_pred CCcEEEEEcCCceEEEEecCCcceEEEEeecCcc-----ceeeeeecCCCceEEeccCcceEEEeccchhh---------
Confidence 8899999999999999999999888885432111 123677889999998776653 67655321
Q ss_pred ccccCCCccccccccceEEEEEEeccCCccEeeecce
Q 000722 354 ELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTN 390 (1331)
Q Consensus 354 ~~~~~~~~~~l~~h~~~~I~~la~sp~~~~lLAtGs~ 390 (1331)
.....+|+.++..-.. .|+.+.|++ +..+||.++.
T Consensus 421 ~s~~PkPik~~dNLtt-~Itsl~Fn~-d~qiLAiaS~ 455 (514)
T KOG2055|consen 421 ASTNPKPIKTVDNLTT-AITSLQFNH-DAQILAIASR 455 (514)
T ss_pred ccCCCCchhhhhhhhe-eeeeeeeCc-chhhhhhhhh
Confidence 1112344555554445 799999999 4766777663
No 160
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.59 E-value=8.2e-15 Score=167.09 Aligned_cols=268 Identities=12% Similarity=0.164 Sum_probs=181.8
Q ss_pred cchhhHHHHhhhccccccCCcccccccccccCCCCCCCCceEEEEEeecceeEeeeecccCCCCCcc-ccccccceeeeh
Q 000722 94 DDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFLDLVTMRGRDIPKQ-ELDNKSLVCMEF 172 (1331)
Q Consensus 94 DgtIrvWdl~tg~~l~~~~~~~~~~~~~~V~svafspdg~~lLasgs~d~iIvwDl~t~~~~~i~~~-~~h~~~V~~Vaf 172 (1331)
...+++||+.............. ...+.+++|.......+++.+.|.+++..-+.++...++.. ....+.-.|++.
T Consensus 11 gd~~kl~D~s~~~~~~~~~~~t~---~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~ 87 (673)
T KOG4378|consen 11 GDKTKLSDFSDLETKSEYVHQTA---EPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVAC 87 (673)
T ss_pred CCceEEeecccccCccccccCCC---CCcceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchHHHHhh
Confidence 45688898765433211111111 22377888877653233344556666332222222222222 222334455555
Q ss_pred hhcccCCCcceEeecCCCceeeeeehhhheeehhhcCCCccchhhhhHhhhccccEEEeecCCCceEEEEeccCCCcccc
Q 000722 173 LSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRE 252 (1331)
Q Consensus 173 ~P~s~Spdg~~LasGs~DGtIrlWDl~t~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrVWDl~tg~~~~~ 252 (1331)
.....++++|+..+.|+|||++...+.+.+ .+|+..|+++. ++....+|++++..|.|.|..+.++....+
T Consensus 88 -----~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~l-kdh~stvt~v~---YN~~DeyiAsvs~gGdiiih~~~t~~~tt~ 158 (673)
T KOG4378|consen 88 -----ASQSLYEISGGQSGCVKIWDLRAKLIHRFL-KDHQSTVTYVD---YNNTDEYIASVSDGGDIIIHGTKTKQKTTT 158 (673)
T ss_pred -----hhcceeeeccCcCceeeehhhHHHHHhhhc-cCCcceeEEEE---ecCCcceeEEeccCCcEEEEecccCccccc
Confidence 233589999999999999999954454444 59999999998 677888999999999999999988764433
Q ss_pred ccccceeee-ccCcEEEEEechhccCCCcEEEeecCceeEeeeccchhhhcccCCCCcccccccccccCCCCCCCce--e
Q 000722 253 LVPKLSLKA-HDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDI--L 329 (1331)
Q Consensus 253 ~~~~~~l~g-H~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg~l--L 329 (1331)
+.. ....|.-+.|+| ....+|.+++++|.|.+||+....++.. ....|..+...++|+|.+.. +
T Consensus 159 ------f~~~sgqsvRll~ys~--skr~lL~~asd~G~VtlwDv~g~sp~~~-----~~~~HsAP~~gicfspsne~l~v 225 (673)
T KOG4378|consen 159 ------FTIDSGQSVRLLRYSP--SKRFLLSIASDKGAVTLWDVQGMSPIFH-----ASEAHSAPCRGICFSPSNEALLV 225 (673)
T ss_pred ------eecCCCCeEEEeeccc--ccceeeEeeccCCeEEEEeccCCCcccc-----hhhhccCCcCcceecCCccceEE
Confidence 222 234567899999 3566788999999999999987665544 35789999999999998873 3
Q ss_pred eeeecce--eeeeecCccccccccccccccCCCccccccccceEEEEEEeccCCccEeeecceeEEEEeecCCCCCCC
Q 000722 330 TCVKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPRSLPA 405 (1331)
Q Consensus 330 a~s~Dg~--IWdl~~~~~~~l~~~~~~~~~~~~~~~l~~h~~~~I~~la~sp~~~~lLAtGs~DG~Il~VWDlr~~p~ 405 (1331)
+.|.|.+ +||++.... ...+... .+...++|++ +|.+|+.|+..|.| ..||+|..+.
T Consensus 226 sVG~Dkki~~yD~~s~~s---------------~~~l~y~--~Plstvaf~~-~G~~L~aG~s~G~~-i~YD~R~~k~ 284 (673)
T KOG4378|consen 226 SVGYDKKINIYDIRSQAS---------------TDRLTYS--HPLSTVAFSE-CGTYLCAGNSKGEL-IAYDMRSTKA 284 (673)
T ss_pred EecccceEEEeecccccc---------------cceeeec--CCcceeeecC-CceEEEeecCCceE-EEEecccCCC
Confidence 6789998 567663211 1112111 2688999999 68999999999998 5999987544
No 161
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.59 E-value=2e-14 Score=155.40 Aligned_cols=213 Identities=17% Similarity=0.205 Sum_probs=159.5
Q ss_pred ccccccccCCCCCCCCceEEEEEeeccee-EeeeecccC----------CC---CCccccccccceeeehhhcccCCCcc
Q 000722 117 SNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRG----------RD---IPKQELDNKSLVCMEFLSRSAVGDVP 182 (1331)
Q Consensus 117 ~~~~~~V~svafspdg~~lLasgs~d~iI-vwDl~t~~~----------~~---i~~~~~h~~~V~~Vaf~P~s~Spdg~ 182 (1331)
..|.+.|+++...+...+++++|+.|+.+ +||++.... .+ ......|.-.|..+.|.| .|..
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP----~DtG 115 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYP----IDTG 115 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEee----ecCc
Confidence 34467788888877655688888888877 889875321 11 122345677899999977 3667
Q ss_pred eEeecCCCceeeeeehhhheeehhhcCCCccchhhhhHhhhccccEEEeecCCCceEEEEeccCCCccccccccceeeec
Q 000722 183 LVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAH 262 (1331)
Q Consensus 183 ~LasGs~DGtIrlWDl~t~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrVWDl~tg~~~~~~~~~~~l~gH 262 (1331)
.+.+++.|.++++||..+-+....|. -.+.|++-+|-.....-.++++|..|-.|++-|+.+|.+.+ ++.||
T Consensus 116 mFtssSFDhtlKVWDtnTlQ~a~~F~--me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH------~LsGH 187 (397)
T KOG4283|consen 116 MFTSSSFDHTLKVWDTNTLQEAVDFK--MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSH------TLSGH 187 (397)
T ss_pred eeecccccceEEEeecccceeeEEee--cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCccee------eeccc
Confidence 89999999999999999988777764 44555555432333345688999999999999999998655 48999
Q ss_pred cCcEEEEEechhccCCCcEEEeecCceeEeeeccch-hhhcccCC--------CCcccccccccccCCCCCCCcee-eee
Q 000722 263 DGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSF-KELRRIKP--------VPKLACHSVASWCHPRAPNLDIL-TCV 332 (1331)
Q Consensus 263 ~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~-~~l~~~~~--------~~~l~~H~~~V~svafspdg~lL-a~s 332 (1331)
.+.|.++.|+| ...-.|++||.||.||+||++.- .|...+.. .+.-..|.+.|..++|+.++.++ +++
T Consensus 188 r~~vlaV~Wsp--~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~g 265 (397)
T KOG4283|consen 188 RDGVLAVEWSP--SSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCG 265 (397)
T ss_pred cCceEEEEecc--CceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhcc
Confidence 99999999999 35567889999999999999864 23332211 12356788999999999999866 778
Q ss_pred ecce--eeeeecC
Q 000722 333 KDSH--IWAIEHP 343 (1331)
Q Consensus 333 ~Dg~--IWdl~~~ 343 (1331)
.|.+ +|+...+
T Consensus 266 td~r~r~wn~~~G 278 (397)
T KOG4283|consen 266 TDDRIRVWNMESG 278 (397)
T ss_pred CccceEEeecccC
Confidence 7774 8998765
No 162
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.58 E-value=2.8e-14 Score=155.77 Aligned_cols=225 Identities=15% Similarity=0.221 Sum_probs=153.3
Q ss_pred hhHHHHhhhccccccC-CcccccccccccCCCCCCCCceEEEEEeeccee-EeeeecccCC---CCCccccccccceeee
Q 000722 97 VRFWQLWRNRAAAAEA-PTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGR---DIPKQELDNKSLVCME 171 (1331)
Q Consensus 97 IrvWdl~tg~~l~~~~-~~~~~~~~~~V~svafspdg~~lLasgs~d~iI-vwDl~t~~~~---~i~~~~~h~~~V~~Va 171 (1331)
.+-|+....+..+... ..+.+| ...|++++|+.||+ .|++++.|+.| +|+++....+ ++ .....-+..+.+.
T Consensus 63 ~~~~k~~q~~f~Hpl~~~~LKgH-~~~vt~~~FsSdGK-~lat~~~Dr~Ir~w~~~DF~~~eHr~~-R~nve~dhpT~V~ 139 (420)
T KOG2096|consen 63 NDQWKAKQPTFVHPLNVSVLKGH-KKEVTDVAFSSDGK-KLATISGDRSIRLWDVRDFENKEHRCI-RQNVEYDHPTRVV 139 (420)
T ss_pred hhhhcccCCCcccchhhhhhhcc-CCceeeeEEcCCCc-eeEEEeCCceEEEEecchhhhhhhhHh-hccccCCCceEEE
Confidence 4556665555444322 334455 88999999999998 88999988887 7877653322 22 1222344678899
Q ss_pred hhhcccCCCcce-EeecCCCceeeeeehhhh---eeeh--------hhcCCCccchhhhhHhhhccccEEEeecCCCceE
Q 000722 172 FLSRSAVGDVPL-VAFGSSDGVIRVLSMISW---KLVR--------RYTGGHKGSISCLMTFMASSGEALLVSGGSDGLL 239 (1331)
Q Consensus 172 f~P~s~Spdg~~-LasGs~DGtIrlWDl~t~---~~v~--------~~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtI 239 (1331)
| +||.+- ++.+-...++++|.+... .... .|...|.-.+..+- ...++.+|+|++.|..|
T Consensus 140 F-----apDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iG---iA~~~k~imsas~dt~i 211 (420)
T KOG2096|consen 140 F-----APDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIG---IAGNAKYIMSASLDTKI 211 (420)
T ss_pred E-----CCCcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEe---ecCCceEEEEecCCCcE
Confidence 9 667654 444556678999977532 1111 12223444444433 45678899999999999
Q ss_pred EEEeccCCCccccccccceeeeccCcEEEEEechhccCCCcEEEeecCceeEeeeccchh--hhcccCCCCccccccccc
Q 000722 240 ILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFK--ELRRIKPVPKLACHSVAS 317 (1331)
Q Consensus 240 rVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~--~l~~~~~~~~l~~H~~~V 317 (1331)
.+|+++ |+.+.. +......-+..+.+| +|++|++++..--|++|..--++ ..+....+..+.||...|
T Consensus 212 ~lw~lk-Gq~L~~------idtnq~~n~~aavSP---~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV 281 (420)
T KOG2096|consen 212 CLWDLK-GQLLQS------IDTNQSSNYDAAVSP---DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAV 281 (420)
T ss_pred EEEecC-Cceeee------eccccccccceeeCC---CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhhe
Confidence 999998 776554 222333345678899 99999999999999999874221 223333445689999999
Q ss_pred ccCCCCCCCc-eeeeeecce--eeeeec
Q 000722 318 WCHPRAPNLD-ILTCVKDSH--IWAIEH 342 (1331)
Q Consensus 318 ~svafspdg~-lLa~s~Dg~--IWdl~~ 342 (1331)
..++|+++.. +++.+.||+ |||++-
T Consensus 282 ~~~aFsn~S~r~vtvSkDG~wriwdtdV 309 (420)
T KOG2096|consen 282 LAAAFSNSSTRAVTVSKDGKWRIWDTDV 309 (420)
T ss_pred eeeeeCCCcceeEEEecCCcEEEeeccc
Confidence 9999999977 668999995 999874
No 163
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.58 E-value=2.8e-14 Score=162.12 Aligned_cols=208 Identities=19% Similarity=0.238 Sum_probs=156.0
Q ss_pred cccceeeehhhc--ccCCCcceEeecCCCceeeeeehhhh--------------eee-----hh-hcCCCccchhhhhHh
Q 000722 164 NKSLVCMEFLSR--SAVGDVPLVAFGSSDGVIRVLSMISW--------------KLV-----RR-YTGGHKGSISCLMTF 221 (1331)
Q Consensus 164 ~~~V~~Vaf~P~--s~Spdg~~LasGs~DGtIrlWDl~t~--------------~~v-----~~-~~~gH~~~V~~vawf 221 (1331)
.....|++|+-. .....|+++|.|+.|..|.|||+.-. +.. +. ...+|+..|..+.|
T Consensus 173 pafPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~- 251 (463)
T KOG0270|consen 173 PAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSW- 251 (463)
T ss_pred cCcchhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHh-
Confidence 456688888642 12234789999999999999998521 000 01 11379999999986
Q ss_pred hhccccEEEeecCCCceEEEEeccCCCccccccccceeeeccCcEEEEEechhccCCCcEEEeecCceeEeeeccchhhh
Q 000722 222 MASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKEL 301 (1331)
Q Consensus 222 ~~spdg~lLaSgs~DgtIrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l 301 (1331)
.--..+.|+|||.|.+|++||+.++++.. ++..|.+.|.++.|+|. ...+|++||.|++|++.|++...+.
T Consensus 252 -n~~~~nVLaSgsaD~TV~lWD~~~g~p~~------s~~~~~k~Vq~l~wh~~--~p~~LLsGs~D~~V~l~D~R~~~~s 322 (463)
T KOG0270|consen 252 -NRNFRNVLASGSADKTVKLWDVDTGKPKS------SITHHGKKVQTLEWHPY--EPSVLLSGSYDGTVALKDCRDPSNS 322 (463)
T ss_pred -ccccceeEEecCCCceEEEEEcCCCCcce------ehhhcCCceeEEEecCC--CceEEEeccccceEEeeeccCcccc
Confidence 34446799999999999999999998654 36789999999999994 7889999999999999999852221
Q ss_pred cccCCCCcccccccccccCCCCCCCc--eeeeeecceeeeeecCccccccccccccccCCCccccccccceEEEEEEecc
Q 000722 302 RRIKPVPKLACHSVASWCHPRAPNLD--ILTCVKDSHIWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHS 379 (1331)
Q Consensus 302 ~~~~~~~~l~~H~~~V~svafspdg~--lLa~s~Dg~IWdl~~~~~~~l~~~~~~~~~~~~~~~l~~h~~~~I~~la~sp 379 (1331)
.. .-.-.+.|-.++|.|... ++++..||+|+-+..+. ...++.++..|.. .|.++++++
T Consensus 323 ~~------~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~------------~~~~vwt~~AHd~-~ISgl~~n~ 383 (463)
T KOG0270|consen 323 GK------EWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRN------------PGKPVWTLKAHDD-EISGLSVNI 383 (463)
T ss_pred Cc------eEEeccceEEEEecCCCceeEEEecCCceEEeeecCC------------CCCceeEEEeccC-CcceEEecC
Confidence 11 122234566788888765 55777889875444321 1256667888988 999999999
Q ss_pred CCccEeeecceeEEEEeecCCC
Q 000722 380 LQPHLVATGTNVGVIISEFDPR 401 (1331)
Q Consensus 380 ~~~~lLAtGs~DG~Il~VWDlr 401 (1331)
..++++++++.|++| ++|++.
T Consensus 384 ~~p~~l~t~s~d~~V-klw~~~ 404 (463)
T KOG0270|consen 384 QTPGLLSTASTDKVV-KLWKFD 404 (463)
T ss_pred CCCcceeeccccceE-EEEeec
Confidence 889999999999998 899974
No 164
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.56 E-value=6.2e-15 Score=171.60 Aligned_cols=290 Identities=17% Similarity=0.176 Sum_probs=201.4
Q ss_pred CCcccchhhh--hhhhhhcccccccCCCCcccccCCceeEEeeecchhhHHHHhhhccccccCCcccccccccccCCCCC
Q 000722 52 GGVDQRRLVG--AKLEKLAEGELEHKGKPTEAMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPS 129 (1331)
Q Consensus 52 ~~~~~i~~vs--pdg~~Lasgs~d~~g~~l~~l~gg~V~sVaf~DgtIrvWdl~tg~~l~~~~~~~~~~~~~~V~svafs 129 (1331)
+|.+.+++++ +.|..|++|+ .||+||+|.+.+++|+... ...+.|.|++|+
T Consensus 398 GHtg~Vr~iSvdp~G~wlasGs---------------------dDGtvriWEi~TgRcvr~~------~~d~~I~~vaw~ 450 (733)
T KOG0650|consen 398 GHTGLVRSISVDPSGEWLASGS---------------------DDGTVRIWEIATGRCVRTV------QFDSEIRSVAWN 450 (733)
T ss_pred ccCCeEEEEEecCCcceeeecC---------------------CCCcEEEEEeecceEEEEE------eecceeEEEEec
Confidence 5566666665 6777777765 6899999999999997421 124578999999
Q ss_pred CCCce-EEEEEeecceeEeeeeccc-----------------------------------CCCCCccccccccceeeehh
Q 000722 130 TKGRH-FLVICCVNKAIFLDLVTMR-----------------------------------GRDIPKQELDNKSLVCMEFL 173 (1331)
Q Consensus 130 pdg~~-lLasgs~d~iIvwDl~t~~-----------------------------------~~~i~~~~~h~~~V~~Vaf~ 173 (1331)
|.+.. +|+++-...+.+.+..-+. ...+.....|...|+.|.|
T Consensus 451 P~~~~~vLAvA~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtW- 529 (733)
T KOG0650|consen 451 PLSDLCVLAVAVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTW- 529 (733)
T ss_pred CCCCceeEEEEecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeee-
Confidence 98764 3444444443333322110 0011223456778999999
Q ss_pred hcccCCCcceEeecCCC---ceeeeeehhhheeehhhcCCCccchhhhhHhhhccccEEEeecCCCceEEEEeccCCCcc
Q 000722 174 SRSAVGDVPLVAFGSSD---GVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDS 250 (1331)
Q Consensus 174 P~s~Spdg~~LasGs~D---GtIrlWDl~t~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrVWDl~tg~~~ 250 (1331)
+..|.||++.+-+ ..|.|+++...+...-|. ...+.|.++. |+|...+|+.++ -..|++||+.....+
T Consensus 530 ----HrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~-kskG~vq~v~---FHPs~p~lfVaT-q~~vRiYdL~kqelv 600 (733)
T KOG0650|consen 530 ----HRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFR-KSKGLVQRVK---FHPSKPYLFVAT-QRSVRIYDLSKQELV 600 (733)
T ss_pred ----ecCCceEEEeccCCCcceEEEEecccccccCchh-hcCCceeEEE---ecCCCceEEEEe-ccceEEEehhHHHHH
Confidence 6789999987653 568899998776666664 4556777776 788877777655 468999999886655
Q ss_pred ccccccceeeeccCcEEEEEechhccCCCcEEEeecCceeEeeeccchhhhcccCCCCcccccccccccCCCCCCCcee-
Q 000722 251 RELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDIL- 329 (1331)
Q Consensus 251 ~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg~lL- 329 (1331)
++ +......|.+++.|| .|..|+.|+.|+.+..||+.-.. +++.++.-|...+++++||+...++
T Consensus 601 Kk------L~tg~kwiS~msihp---~GDnli~gs~d~k~~WfDldlss-----kPyk~lr~H~~avr~Va~H~ryPLfa 666 (733)
T KOG0650|consen 601 KK------LLTGSKWISSMSIHP---NGDNLILGSYDKKMCWFDLDLSS-----KPYKTLRLHEKAVRSVAFHKRYPLFA 666 (733)
T ss_pred HH------HhcCCeeeeeeeecC---CCCeEEEecCCCeeEEEEcccCc-----chhHHhhhhhhhhhhhhhccccceee
Confidence 54 344456799999999 89999999999999999987543 2334488999999999999998888
Q ss_pred eeeecceeeeeecCccccccccccccccCCCccccccccc---eEEEEEEeccCCccEeeecceeEEEEeec
Q 000722 330 TCVKDSHIWAIEHPTYSALTRPLCELSSLVPPQVLAHHKK---LRVYCMVAHSLQPHLVATGTNVGVIISEF 398 (1331)
Q Consensus 330 a~s~Dg~IWdl~~~~~~~l~~~~~~~~~~~~~~~l~~h~~---~~I~~la~sp~~~~lLAtGs~DG~Il~VW 398 (1331)
+|+.|+++.-+....|..+.. ..-..++..+.+|.. ..|....|||..+. |++++.||.| ++|
T Consensus 667 s~sdDgtv~Vfhg~VY~Dl~q----npliVPlK~L~gH~~~~~~gVLd~~wHP~qpW-LfsAGAd~ti-rlf 732 (733)
T KOG0650|consen 667 SGSDDGTVIVFHGMVYNDLLQ----NPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPW-LFSAGADGTI-RLF 732 (733)
T ss_pred eecCCCcEEEEeeeeehhhhc----CCceEeeeeccCceeecccceEeecccCCCce-EEecCCCceE-Eee
Confidence 466678754333333322211 111245666777765 24888899997666 7778888997 887
No 165
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.55 E-value=2e-14 Score=156.68 Aligned_cols=222 Identities=16% Similarity=0.213 Sum_probs=163.0
Q ss_pred ccccccccceeeehhhcccCCCcceEeecCCCceeeeeehh----hheeehhhcCCCccchhhhhHhhhccccEEEeecC
Q 000722 159 KQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMI----SWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGG 234 (1331)
Q Consensus 159 ~~~~h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~----t~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs 234 (1331)
...+|.+-|+|+.| .+.|+.+++|+.|++|+|||.. ++.+..... .|.+.|..+.|. .+.-|+.++++|
T Consensus 8 i~s~h~DlihdVs~-----D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wr-ah~~Si~rV~WA-hPEfGqvvA~cS 80 (361)
T KOG2445|consen 8 IDSGHKDLIHDVSF-----DFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWR-AHDGSIWRVVWA-HPEFGQVVATCS 80 (361)
T ss_pred cccCCcceeeeeee-----cccCceeeeccCCCcEEEEeccCCCCceEEeeeEE-ecCCcEEEEEec-CccccceEEEEe
Confidence 34678899999999 7789999999999999999964 356666666 899999999984 556699999999
Q ss_pred CCceEEEEeccCCC---ccccccccceeeeccCcEEEEEechhccCCCcEEEeecCceeEeeeccc------hhhhcccC
Q 000722 235 SDGLLILWSADHGQ---DSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVS------FKELRRIK 305 (1331)
Q Consensus 235 ~DgtIrVWDl~tg~---~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t------~~~l~~~~ 305 (1331)
.|++++||.-...+ .-++|....++......|+.+.|.|.+ -|-.|++++.||.+|||+.-. ......+.
T Consensus 81 ~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~h-lGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~ 159 (361)
T KOG2445|consen 81 YDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKH-LGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQ 159 (361)
T ss_pred cCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchh-cceEEEEeccCcEEEEEecCCccccccchhhhhhh
Confidence 99999999863221 123455566777788899999999953 467899999999999997643 33333322
Q ss_pred CC-CcccccccccccCCCCCCC---ceeeeeecc------e--eeeeecCccccccccccccccCCCccccccccceEEE
Q 000722 306 PV-PKLACHSVASWCHPRAPNL---DILTCVKDS------H--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVY 373 (1331)
Q Consensus 306 ~~-~~l~~H~~~V~svafspdg---~lLa~s~Dg------~--IWdl~~~~~~~l~~~~~~~~~~~~~~~l~~h~~~~I~ 373 (1331)
.+ .....+.....|+.|+|.. .+|+.|.|. + ||...... +....+.++.+|.+ +|+
T Consensus 160 ~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~-----------rKw~kva~L~d~~d-pI~ 227 (361)
T KOG2445|consen 160 NVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENG-----------RKWLKVAELPDHTD-PIR 227 (361)
T ss_pred hccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCc-----------ceeeeehhcCCCCC-cce
Confidence 11 1223455667789998752 366655443 2 67665421 12233556778888 999
Q ss_pred EEEeccCCc---cEeeecceeEEEEeecCCCC
Q 000722 374 CMVAHSLQP---HLVATGTNVGVIISEFDPRS 402 (1331)
Q Consensus 374 ~la~sp~~~---~lLAtGs~DG~Il~VWDlr~ 402 (1331)
.++|.|.-+ ++||+++.|| | +||+++.
T Consensus 228 di~wAPn~Gr~y~~lAvA~kDg-v-~I~~v~~ 257 (361)
T KOG2445|consen 228 DISWAPNIGRSYHLLAVATKDG-V-RIFKVKV 257 (361)
T ss_pred eeeeccccCCceeeEEEeecCc-E-EEEEEee
Confidence 999999744 6799999999 5 8999863
No 166
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.54 E-value=1e-13 Score=152.44 Aligned_cols=264 Identities=16% Similarity=0.193 Sum_probs=177.6
Q ss_pred cccccCCCCCC----CCceEEEEEeecceeEeeeec-ccCCCCCcc--ccccccceeeehhhcccCC-CcceEeecCCCc
Q 000722 120 TSGFASPPPST----KGRHFLVICCVNKAIFLDLVT-MRGRDIPKQ--ELDNKSLVCMEFLSRSAVG-DVPLVAFGSSDG 191 (1331)
Q Consensus 120 ~~~V~svafsp----dg~~lLasgs~d~iIvwDl~t-~~~~~i~~~--~~h~~~V~~Vaf~P~s~Sp-dg~~LasGs~DG 191 (1331)
...+..++|.+ +....+++.+.+.+.++.... +..+.++.. ..|......++|.-. +. ..++++.|+.-|
T Consensus 38 ~~~I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd--~~~~~p~la~~G~~G 115 (385)
T KOG1034|consen 38 NKPIFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYD--SNTGNPFLAAGGYLG 115 (385)
T ss_pred CCccceeeeehhcCCCCCceEEEeCCcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEec--CCCCCeeEEeeccee
Confidence 44555666653 344588888888887774432 111122222 234556667777442 22 257899999999
Q ss_pred eeeeeehhhheeehhhcCCCccchhhhhHhhhcc-ccEEEeecCCCceEEEEeccCCCccccccccceeeeccCcEEEEE
Q 000722 192 VIRVLSMISWKLVRRYTGGHKGSISCLMTFMASS-GEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVE 270 (1331)
Q Consensus 192 tIrlWDl~t~~~v~~~~~gH~~~V~~vawf~~sp-dg~lLaSgs~DgtIrVWDl~tg~~~~~~~~~~~l~gH~~~V~sva 270 (1331)
.|||.|+.++++...+. +|...|+.+. ++| +.++++++|.|.+||+|++++..++..+ .-+.||.+.|.++.
T Consensus 116 vIrVid~~~~~~~~~~~-ghG~sINeik---~~p~~~qlvls~SkD~svRlwnI~~~~Cv~Vf---GG~egHrdeVLSvD 188 (385)
T KOG1034|consen 116 VIRVIDVVSGQCSKNYR-GHGGSINEIK---FHPDRPQLVLSASKDHSVRLWNIQTDVCVAVF---GGVEGHRDEVLSVD 188 (385)
T ss_pred EEEEEecchhhhcccee-ccCccchhhh---cCCCCCcEEEEecCCceEEEEeccCCeEEEEe---cccccccCcEEEEE
Confidence 99999999999999998 9999999998 444 4579999999999999999999876542 23589999999999
Q ss_pred echhccCCCcEEEeecCceeEeeeccchhhhcccCC----------------------CCcccccccccccCCCCCCCce
Q 000722 271 LSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKP----------------------VPKLACHSVASWCHPRAPNLDI 328 (1331)
Q Consensus 271 fsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~----------------------~~~l~~H~~~V~svafspdg~l 328 (1331)
|++ ++.+|+++|.|.++++|++...+....++. ..+-.-|.+.|-|+.|--+ -+
T Consensus 189 ~~~---~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~gd-~i 264 (385)
T KOG1034|consen 189 FSL---DGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFGD-FI 264 (385)
T ss_pred EcC---CCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHhh-he
Confidence 999 899999999999999999984332211111 0123457778888887652 14
Q ss_pred eeeeecce--eeeeecCcccccccccccc----ccCCCccccccccceEEEEEEeccC-CccEeeecceeEEEEeecCCC
Q 000722 329 LTCVKDSH--IWAIEHPTYSALTRPLCEL----SSLVPPQVLAHHKKLRVYCMVAHSL-QPHLVATGTNVGVIISEFDPR 401 (1331)
Q Consensus 329 La~s~Dg~--IWdl~~~~~~~l~~~~~~~----~~~~~~~~l~~h~~~~I~~la~sp~-~~~lLAtGs~DG~Il~VWDlr 401 (1331)
|+=|-++. .|.... + .+.+... ....-...+..... .||-+.|.-+ .+..||.|...|.| .+||++
T Consensus 265 lSkscenaI~~w~pgk--l---~e~~~~vkp~es~~Ti~~~~~~~~c-~iWfirf~~d~~~~~la~gnq~g~v-~vwdL~ 337 (385)
T KOG1034|consen 265 LSKSCENAIVCWKPGK--L---EESIHNVKPPESATTILGEFDYPMC-DIWFIRFAFDPWQKMLALGNQSGKV-YVWDLD 337 (385)
T ss_pred eecccCceEEEEecch--h---hhhhhccCCCccceeeeeEeccCcc-ceEEEEEeecHHHHHHhhccCCCcE-EEEECC
Confidence 45455555 476521 1 1111111 01111234444444 6777766542 45679999999998 799997
Q ss_pred CC
Q 000722 402 SL 403 (1331)
Q Consensus 402 ~~ 403 (1331)
..
T Consensus 338 ~~ 339 (385)
T KOG1034|consen 338 NN 339 (385)
T ss_pred CC
Confidence 53
No 167
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.53 E-value=4.8e-13 Score=144.91 Aligned_cols=254 Identities=17% Similarity=0.146 Sum_probs=173.1
Q ss_pred ccCCCCC--CCCceEEEEEeec-----ceeE--eeeecccCCCCCccccccccceeeehhhcccCCCcceEeecCCCcee
Q 000722 123 FASPPPS--TKGRHFLVICCVN-----KAIF--LDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVI 193 (1331)
Q Consensus 123 V~svafs--pdg~~lLasgs~d-----~iIv--wDl~t~~~~~i~~~~~h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtI 193 (1331)
+.++.|+ ++.+..++.|+.. ++-+ +|..+++...... ..|.-+++.+.|.|.+..-...+|++.+ ..+
T Consensus 47 lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~-fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~L 123 (364)
T KOG0290|consen 47 LYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDAN-FDHPYPVTKLMWIPDSKGVYPDLLATSS--DFL 123 (364)
T ss_pred eeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCC-CCCCCCccceEecCCccccCcchhhccc--CeE
Confidence 4455665 4556678888632 2223 3544444333222 4678899999998743212234566654 369
Q ss_pred eeeehhh--he--eehhh----cCCCccchhhhhHhhhccccEEEeecCCCceEEEEeccCCCccccccccceeeeccCc
Q 000722 194 RVLSMIS--WK--LVRRY----TGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGG 265 (1331)
Q Consensus 194 rlWDl~t--~~--~v~~~----~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrVWDl~tg~~~~~~~~~~~l~gH~~~ 265 (1331)
|+|.+.. .+ +...+ ...+..++++..| ..-+.+++.++|-|-++.|||+.++..- ..+..+-+|+..
T Consensus 124 RlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDW--ne~dp~~igtSSiDTTCTiWdie~~~~~---~vkTQLIAHDKE 198 (364)
T KOG0290|consen 124 RLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDW--NEVDPNLIGTSSIDTTCTIWDIETGVSG---TVKTQLIAHDKE 198 (364)
T ss_pred EEEeccCcCCceehhhhhccCcccccCCccccccc--ccCCcceeEeecccCeEEEEEEeecccc---ceeeEEEecCcc
Confidence 9998873 21 11111 1246778899888 4566789999999999999999987321 123457899999
Q ss_pred EEEEEechhccCCCcEEEeecCceeEeeeccchhhhcccCCCCcccccccccccCCCCCCCc-ee-eeeecc---eeeee
Q 000722 266 VVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLD-IL-TCVKDS---HIWAI 340 (1331)
Q Consensus 266 V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg~-lL-a~s~Dg---~IWdl 340 (1331)
|..++|.. +..+.+++.|.||.||+||++..+....+-. -.........++|+++.. ++ +-..|. .|-|+
T Consensus 199 V~DIaf~~--~s~~~FASvgaDGSvRmFDLR~leHSTIIYE---~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDi 273 (364)
T KOG0290|consen 199 VYDIAFLK--GSRDVFASVGADGSVRMFDLRSLEHSTIIYE---DPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDI 273 (364)
T ss_pred eeEEEecc--CccceEEEecCCCcEEEEEecccccceEEec---CCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEe
Confidence 99999998 4678999999999999999997653222100 111134555788887644 44 334444 36787
Q ss_pred ecCccccccccccccccCCCccccccccceEEEEEEeccCCccEeeecceeEEEEeecCCCCCCC
Q 000722 341 EHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPRSLPA 405 (1331)
Q Consensus 341 ~~~~~~~l~~~~~~~~~~~~~~~l~~h~~~~I~~la~sp~~~~lLAtGs~DG~Il~VWDlr~~p~ 405 (1331)
+.+ ..++..+++|.. .|+.++|.|.....|+++++|..++ +||+...+.
T Consensus 274 R~P--------------~tpva~L~~H~a-~VNgIaWaPhS~~hictaGDD~qal-iWDl~q~~~ 322 (364)
T KOG0290|consen 274 RVP--------------CTPVARLRNHQA-SVNGIAWAPHSSSHICTAGDDCQAL-IWDLQQMPR 322 (364)
T ss_pred cCC--------------CcceehhhcCcc-cccceEecCCCCceeeecCCcceEE-EEecccccc
Confidence 754 246778899998 9999999999999999999999984 999875443
No 168
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.50 E-value=8.9e-14 Score=158.41 Aligned_cols=259 Identities=16% Similarity=0.138 Sum_probs=179.8
Q ss_pred ccccccCCCCCCCCc-eEEEEEeeccee-Eeeeecc--cCCCCCccccccccceeeehhhcccCCCcceEeecCCCceee
Q 000722 119 VTSGFASPPPSTKGR-HFLVICCVNKAI-FLDLVTM--RGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIR 194 (1331)
Q Consensus 119 ~~~~V~svafspdg~-~lLasgs~d~iI-vwDl~t~--~~~~i~~~~~h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIr 194 (1331)
+..+|.+++|||..+ .++++|...+.| +||+.+. ....+..+..|..+|.++.|.|. +...+++.|.||+||
T Consensus 185 ~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~----n~s~i~ssSyDGtiR 260 (498)
T KOG4328|consen 185 TDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPA----NTSQIYSSSYDGTIR 260 (498)
T ss_pred cccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCC----ChhheeeeccCceee
Confidence 366899999999876 688888888888 9998532 22234556788999999999763 456899999999999
Q ss_pred eeehhhheeehhhcC-CCccchhhhhHhhhccccEEEeecCCCceEEEEeccCCCccccccccceeeeccCcEEEEEech
Q 000722 195 VLSMISWKLVRRYTG-GHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSR 273 (1331)
Q Consensus 195 lWDl~t~~~v~~~~~-gH~~~V~~vawf~~spdg~lLaSgs~DgtIrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp 273 (1331)
+-|+++...-..+.. ........+. ++.+...++.+..=|...+||.+++.... ..+.-|+..|++|+++|
T Consensus 261 ~~D~~~~i~e~v~s~~~d~~~fs~~d---~~~e~~~vl~~~~~G~f~~iD~R~~~s~~-----~~~~lh~kKI~sv~~NP 332 (498)
T KOG4328|consen 261 LQDFEGNISEEVLSLDTDNIWFSSLD---FSAESRSVLFGDNVGNFNVIDLRTDGSEY-----ENLRLHKKKITSVALNP 332 (498)
T ss_pred eeeecchhhHHHhhcCccceeeeecc---ccCCCccEEEeecccceEEEEeecCCccc-----hhhhhhhcccceeecCC
Confidence 999986533222221 1223333443 56666677777777799999999876422 23567888999999999
Q ss_pred hccCCCcEEEeecCceeEeeeccchhhhcccCCCCcccccccccccCCCCCCC-ceeeeeecce--eeeeecCccccccc
Q 000722 274 VMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNL-DILTCVKDSH--IWAIEHPTYSALTR 350 (1331)
Q Consensus 274 ~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg-~lLa~s~Dg~--IWdl~~~~~~~l~~ 350 (1331)
. ...+|+|+|.|++.+|||++....... +.-....|...|.+..|||.+ .+++.+.|++ |||...- .....
T Consensus 333 ~--~p~~laT~s~D~T~kIWD~R~l~~K~s--p~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~--sa~~~ 406 (498)
T KOG4328|consen 333 V--CPWFLATASLDQTAKIWDLRQLRGKAS--PFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCI--SAKDE 406 (498)
T ss_pred C--CchheeecccCcceeeeehhhhcCCCC--cceecccccceeeeeEEcCCCCceEeeccCCceEEeecccc--cccCC
Confidence 5 668999999999999999986543322 233356799999999999985 5778888885 7887411 00000
Q ss_pred cccccccCCCccccccccc-----eEEEEEEeccCCccEeeecceeEEEEeecCCCCCCCCC
Q 000722 351 PLCELSSLVPPQVLAHHKK-----LRVYCMVAHSLQPHLVATGTNVGVIISEFDPRSLPAVA 407 (1331)
Q Consensus 351 ~~~~~~~~~~~~~l~~h~~-----~~I~~la~sp~~~~lLAtGs~DG~Il~VWDlr~~p~i~ 407 (1331)
+..++. |+. ....-..|+| +.++|++|..-.-| -|||-.....++
T Consensus 407 ---------p~~~I~-Hn~~t~RwlT~fKA~W~P-~~~li~vg~~~r~I-Dv~~~~~~q~v~ 456 (498)
T KOG4328|consen 407 ---------PLGTIP-HNNRTGRWLTPFKAAWDP-DYNLIVVGRYPRPI-DVFDGNGGQMVC 456 (498)
T ss_pred ---------ccceee-ccCcccccccchhheeCC-CccEEEEeccCcce-eEEcCCCCEEee
Confidence 111111 111 0234468999 57889988877776 688765544333
No 169
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.49 E-value=1.7e-12 Score=158.49 Aligned_cols=373 Identities=12% Similarity=0.140 Sum_probs=235.0
Q ss_pred cccccccCCCcEEEEEeecCCc---eeEeecCCCceeeeccccceEEeeeccCC-cccchhhh--hhhhhhccccc-c--
Q 000722 3 RLKAFRPTNDKIVKIQLHPTHP---WLVTADASDHVSVWNWEHRQVIYELKAGG-VDQRRLVG--AKLEKLAEGEL-E-- 73 (1331)
Q Consensus 3 ~l~~L~gHs~~V~~lafSPdg~---~LaSgs~DGtV~VWD~~tg~~i~s~~~~~-~~~i~~vs--pdg~~Lasgs~-d-- 73 (1331)
.++.|.+|...++.+.+.|... ++.+++.||.|++||+..+.+++++..+- ........ .+-...+..+. +
T Consensus 49 ~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~ 128 (792)
T KOG1963|consen 49 CITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYS 128 (792)
T ss_pred hhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCceeEEEechhHhCccceeEeecccce
Confidence 3568999999999999998754 78899999999999999999998887431 11111100 00000110000 0
Q ss_pred ----------cCC----------------------CCcccccCCceeEEeeecchhhHHHHhhhccccccCCcccccccc
Q 000722 74 ----------HKG----------------------KPTEAMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTS 121 (1331)
Q Consensus 74 ----------~~g----------------------~~l~~l~gg~V~sVaf~DgtIrvWdl~tg~~l~~~~~~~~~~~~~ 121 (1331)
..+ +++..-.+|.+..+.- +..+.+|....+... .......-+|..
T Consensus 129 ~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~-~~~~~~~~v~~~~~~-~~~~~~~~~Htf 206 (792)
T KOG1963|consen 129 ILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVH-MCKIHIYFVPKHTKH-TSSRDITVHHTF 206 (792)
T ss_pred eeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEEE-eeeEEEEEeccccee-eccchhhhhhcc
Confidence 000 1111111233333322 444555655554311 112222333355
Q ss_pred cccCCCCCCCCceEEEEEeeccee-Ee-eee-cccCCCCCccccccccceeeehhhcccCCCcceEeecCCCceeeeeeh
Q 000722 122 GFASPPPSTKGRHFLVICCVNKAI-FL-DLV-TMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSM 198 (1331)
Q Consensus 122 ~V~svafspdg~~lLasgs~d~iI-vw-Dl~-t~~~~~i~~~~~h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl 198 (1331)
.+++.++||+++ +++++..++.+ +| |.. .........+..|...|++++| +++|.+|++|+..|.+.+|.+
T Consensus 207 ~~t~~~~spn~~-~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~f-----S~~G~~LlSGG~E~VLv~Wq~ 280 (792)
T KOG1963|consen 207 NITCVALSPNER-YLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSF-----SSDGAYLLSGGREGVLVLWQL 280 (792)
T ss_pred cceeEEeccccc-eEEEeccCCcEEEEeccccccccccceEEEecccccceeEE-----ecCCceEeecccceEEEEEee
Confidence 588999999998 77777766655 88 665 3333345567889999999999 789999999999999999999
Q ss_pred hhheeehhhcCCCccchhhhhHhhhccccEEEeecCCCceEEEEeccCCCcccc---ccccc-e-eeeccCcEEEEEech
Q 000722 199 ISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRE---LVPKL-S-LKAHDGGVVAVELSR 273 (1331)
Q Consensus 199 ~t~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrVWDl~tg~~~~~---~~~~~-~-l~gH~~~V~svafsp 273 (1331)
.+++ +.|.+.-.+.|..+. ++||+++.+....|+.|.+-...+-..... +.+.. . -.+..+-.+.++++|
T Consensus 281 ~T~~--kqfLPRLgs~I~~i~---vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idp 355 (792)
T KOG1963|consen 281 ETGK--KQFLPRLGSPILHIV---VSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDP 355 (792)
T ss_pred cCCC--cccccccCCeeEEEE---EcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcC
Confidence 9887 555556778888887 789999999999999999987754332111 11110 0 112344567889998
Q ss_pred hccCCCcEEEeecCceeEeeeccchhhhcccCCCC----ccc-ccccccccCCCCCCCceeeee---------ecc----
Q 000722 274 VMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVP----KLA-CHSVASWCHPRAPNLDILTCV---------KDS---- 335 (1331)
Q Consensus 274 ~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~----~l~-~H~~~V~svafspdg~lLa~s---------~Dg---- 335 (1331)
....++-.+..|.|.+||+-+.+.+..+.... .-. .+...++.++.+..|.+++.. .|+
T Consensus 356 ---r~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~L 432 (792)
T KOG1963|consen 356 ---RTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSL 432 (792)
T ss_pred ---CCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEE
Confidence 56788889999999999998876654432111 011 344567788888888877543 222
Q ss_pred eeeeeecCccccccccccccccCCCccccccccceEEEEEEeccCCccEeeecceeEEEEeecCCCC
Q 000722 336 HIWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPRS 402 (1331)
Q Consensus 336 ~IWdl~~~~~~~l~~~~~~~~~~~~~~~l~~h~~~~I~~la~sp~~~~lLAtGs~DG~Il~VWDlr~ 402 (1331)
++|....... .+.+. .....+|+..-+..+..++......++++.||.+ ++|-+..
T Consensus 433 KFW~~n~~~k------t~~L~----T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~-KiW~~~~ 488 (792)
T KOG1963|consen 433 KFWQYNPNSK------TFILN----TKINNPHGNAFVATIFLNPTRSVRCVTASVDGDF-KIWVFTD 488 (792)
T ss_pred EEEEEcCCcc------eeEEE----EEEecCCCceeEEEEEecCcccceeEEeccCCeE-EEEEEec
Confidence 2565543211 00000 1123457664555555555455478999999998 8998653
No 170
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.47 E-value=2.5e-13 Score=152.21 Aligned_cols=212 Identities=18% Similarity=0.194 Sum_probs=158.4
Q ss_pred CCCccccccccceeeehhhcccCCCcceEeecCCCceeeeeehhhh-------eeehhhcCCCccchhhhhHhhhccccE
Q 000722 156 DIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISW-------KLVRRYTGGHKGSISCLMTFMASSGEA 228 (1331)
Q Consensus 156 ~i~~~~~h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~-------~~v~~~~~gH~~~V~~vawf~~spdg~ 228 (1331)
..+...+|..+|..++|.| .+...|++||+|.+|.||++-.+ +.+..+. ||...|.-++|+ +.-.+
T Consensus 73 ~~P~v~GHt~~vLDi~w~P----fnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~-gH~rrVg~V~wH--PtA~N 145 (472)
T KOG0303|consen 73 SYPLVCGHTAPVLDIDWCP----FNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELY-GHQRRVGLVQWH--PTAPN 145 (472)
T ss_pred CCCCccCccccccccccCc----cCCceeecCCCCceEEEEECCCcccccCcccceEEEe-ecceeEEEEeec--ccchh
Confidence 5667889999999999976 36778999999999999998654 3344555 999999999974 44457
Q ss_pred EEeecCCCceEEEEeccCCCccccccccceeeeccCcEEEEEechhccCCCcEEEeecCceeEeeeccchhhhcccCCCC
Q 000722 229 LLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVP 308 (1331)
Q Consensus 229 lLaSgs~DgtIrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~ 308 (1331)
.|+|++.|.+|.+||+.+|..+-+ +. |.+.|.++.|+. +|.+|++.+.|+.|||||.++++.+..
T Consensus 146 VLlsag~Dn~v~iWnv~tgeali~------l~-hpd~i~S~sfn~---dGs~l~TtckDKkvRv~dpr~~~~v~e----- 210 (472)
T KOG0303|consen 146 VLLSAGSDNTVSIWNVGTGEALIT------LD-HPDMVYSMSFNR---DGSLLCTTCKDKKVRVIDPRRGTVVSE----- 210 (472)
T ss_pred hHhhccCCceEEEEeccCCceeee------cC-CCCeEEEEEecc---CCceeeeecccceeEEEcCCCCcEeee-----
Confidence 899999999999999999985433 45 999999999998 999999999999999999999998766
Q ss_pred cccccccc-cccCCCCCCCceeeeeecc----e--eeeeecCccccccccccccccCCCccccccccceEEEEEEeccCC
Q 000722 309 KLACHSVA-SWCHPRAPNLDILTCVKDS----H--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQ 381 (1331)
Q Consensus 309 ~l~~H~~~-V~svafspdg~lLa~s~Dg----~--IWdl~~~~~~~l~~~~~~~~~~~~~~~l~~h~~~~I~~la~sp~~ 381 (1331)
..+|.+. -..+.|-.+|.+++.|... . |||-.+.. .++ ...++...+ .|.---|.++.
T Consensus 211 -~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~-----eP~-------~~~elDtSn--Gvl~PFyD~dt 275 (472)
T KOG0303|consen 211 -GVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLE-----EPI-------ALQELDTSN--GVLLPFYDPDT 275 (472)
T ss_pred -cccccCCCcceeEEeccCceeeeccccccccceeccCccccc-----Ccc-------eeEEeccCC--ceEEeeecCCC
Confidence 2345432 2245677788877766433 2 79876521 111 122233222 35555667766
Q ss_pred ccEeeecceeEEEEeecCCCCCCC
Q 000722 382 PHLVATGTNVGVIISEFDPRSLPA 405 (1331)
Q Consensus 382 ~~lLAtGs~DG~Il~VWDlr~~p~ 405 (1331)
..+.++|-.|+.| |-|.+...++
T Consensus 276 ~ivYl~GKGD~~I-RYyEit~d~P 298 (472)
T KOG0303|consen 276 SIVYLCGKGDSSI-RYFEITNEPP 298 (472)
T ss_pred CEEEEEecCCcce-EEEEecCCCc
Confidence 6677889999998 8888865443
No 171
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.47 E-value=6.5e-14 Score=167.83 Aligned_cols=276 Identities=15% Similarity=0.179 Sum_probs=200.9
Q ss_pred ccccccCCCcEEEEEeecCCceeEeecCCCceeeeccccceEEeeeccCCcccchhhhhhhhhhcccccccCCCCccccc
Q 000722 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMR 83 (1331)
Q Consensus 4 l~~L~gHs~~V~~lafSPdg~~LaSgs~DGtV~VWD~~tg~~i~s~~~~~~~~i~~vspdg~~Lasgs~d~~g~~l~~l~ 83 (1331)
++.|.||-+.|.|+.|...|.+++||+.|..|+||..+++.|+.+..+|
T Consensus 183 ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGh------------------------------- 231 (1113)
T KOG0644|consen 183 IKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGH------------------------------- 231 (1113)
T ss_pred HHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCC-------------------------------
Confidence 5778999999999999999999999999999999999988777766633
Q ss_pred CCceeEEeeecchhhHHHHhhhccccccCCcccccccccccCCCCCCCCceEEEEEeeccee-EeeeecccCCCCCcccc
Q 000722 84 GGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQEL 162 (1331)
Q Consensus 84 gg~V~sVaf~DgtIrvWdl~tg~~l~~~~~~~~~~~~~~V~svafspdg~~lLasgs~d~iI-vwDl~t~~~~~i~~~~~ 162 (1331)
...++.++.+.+.- ++++++.|.+| +|.+..+. .+..+.+
T Consensus 232 ------------------------------------s~ditdlavs~~n~-~iaaaS~D~vIrvWrl~~~~--pvsvLrg 272 (1113)
T KOG0644|consen 232 ------------------------------------SGDITDLAVSSNNT-MIAAASNDKVIRVWRLPDGA--PVSVLRG 272 (1113)
T ss_pred ------------------------------------ccccchhccchhhh-hhhhcccCceEEEEecCCCc--hHHHHhc
Confidence 22234455555554 88999999998 89888754 4667899
Q ss_pred ccccceeeehhhcccCCCcceEeecCCCceeeeeehhhheeehhh----cCCCccchhhhhHhhhccccEEEeecCCCce
Q 000722 163 DNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRY----TGGHKGSISCLMTFMASSGEALLVSGGSDGL 238 (1331)
Q Consensus 163 h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~~~v~~~----~~gH~~~V~~vawf~~spdg~lLaSgs~Dgt 238 (1331)
|.+.|++++|.| - .+.+.||++++||.+ ...+... .......+.++. +..++.-++||+.|+.
T Consensus 273 htgavtaiafsP-----~----~sss~dgt~~~wd~r-~~~~~y~prp~~~~~~~~~~s~~---~~~~~~~f~Tgs~d~e 339 (1113)
T KOG0644|consen 273 HTGAVTAIAFSP-----R----ASSSDDGTCRIWDAR-LEPRIYVPRPLKFTEKDLVDSIL---FENNGDRFLTGSRDGE 339 (1113)
T ss_pred cccceeeeccCc-----c----ccCCCCCceEecccc-ccccccCCCCCCcccccceeeee---ccccccccccccCCcc
Confidence 999999999954 2 277899999999987 2221111 101223344443 5677888999999999
Q ss_pred EEEEeccCCCccccccccceeeeccCcEEEEEechhccCCCcEEEeecCceeEeeeccchhhhcccCCCCcccccccccc
Q 000722 239 LILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASW 318 (1331)
Q Consensus 239 IrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~ 318 (1331)
-+.|.+.. +..|...+.-+.++. +...+.++.-.+-.+++|++.+|...+. +.+|...++
T Consensus 340 a~n~e~~~------------l~~~~~~lif~t~ss--d~~~~~~~ar~~~~~~vwnl~~g~l~H~------l~ghsd~~y 399 (1113)
T KOG0644|consen 340 ARNHEFEQ------------LAWRSNLLIFVTRSS--DLSSIVVTARNDHRLCVWNLYTGQLLHN------LMGHSDEVY 399 (1113)
T ss_pred cccchhhH------------hhhhccceEEEeccc--cccccceeeeeeeEeeeeecccchhhhh------hccccccee
Confidence 99887653 233444444444443 1335677777899999999999987766 789999999
Q ss_pred cCCCCCCCcee--eeeecce--eeeeecCccccccccccccccCCCccc-cccccceEEEEEEeccCCccEeeecceeEE
Q 000722 319 CHPRAPNLDIL--TCVKDSH--IWAIEHPTYSALTRPLCELSSLVPPQV-LAHHKKLRVYCMVAHSLQPHLVATGTNVGV 393 (1331)
Q Consensus 319 svafspdg~lL--a~s~Dg~--IWdl~~~~~~~l~~~~~~~~~~~~~~~-l~~h~~~~I~~la~sp~~~~lLAtGs~DG~ 393 (1331)
.+.+||-+..+ +++.||. |||+-.+. ++.. +.+|. .+....||+ +|..++...+-|.
T Consensus 400 vLd~Hpfn~ri~msag~dgst~iwdi~eg~---------------pik~y~~gh~--kl~d~kFSq-dgts~~lsd~hgq 461 (1113)
T KOG0644|consen 400 VLDVHPFNPRIAMSAGYDGSTIIWDIWEGI---------------PIKHYFIGHG--KLVDGKFSQ-DGTSIALSDDHGQ 461 (1113)
T ss_pred eeeecCCCcHhhhhccCCCceEeeecccCC---------------cceeeecccc--eeeccccCC-CCceEecCCCCCc
Confidence 99999987755 6788986 89987642 2222 23333 477788998 5666888888888
Q ss_pred EEeecCCC
Q 000722 394 IISEFDPR 401 (1331)
Q Consensus 394 Il~VWDlr 401 (1331)
+ +++...
T Consensus 462 l-~i~g~g 468 (1113)
T KOG0644|consen 462 L-YILGTG 468 (1113)
T ss_pred e-EEeccC
Confidence 6 566643
No 172
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.46 E-value=4.7e-14 Score=150.99 Aligned_cols=288 Identities=16% Similarity=0.204 Sum_probs=181.2
Q ss_pred cccccCCCcEEEEEeecCCceeEeecCCCceeeeccccceEEeeeccCCcccchhhh--hhhhhhcccccccCCCCcccc
Q 000722 5 KAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVG--AKLEKLAEGELEHKGKPTEAM 82 (1331)
Q Consensus 5 ~~L~gHs~~V~~lafSPdg~~LaSgs~DGtV~VWD~~tg~~i~s~~~~~~~~i~~vs--pdg~~Lasgs~d~~g~~l~~l 82 (1331)
-.|++|...|+|+.|..+++ |.+|..-|.|++|++.+...+..+...+..-+.... +++... +.
T Consensus 8 fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~d~l~-tq------------ 73 (323)
T KOG0322|consen 8 FVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPNDSLD-TQ------------ 73 (323)
T ss_pred eEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCCcchh-hc------------
Confidence 35779999999999998765 899999999999999998877777644433322221 211111 11
Q ss_pred cCCceeEEeeecchhhHHHHhhhccccccCCcccccccccccCCCCCC-----CCc---eEEEEEeeccee--Eeeeecc
Q 000722 83 RGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPST-----KGR---HFLVICCVNKAI--FLDLVTM 152 (1331)
Q Consensus 83 ~gg~V~sVaf~DgtIrvWdl~tg~~l~~~~~~~~~~~~~~V~svafsp-----dg~---~lLasgs~d~iI--vwDl~t~ 152 (1331)
| .|..+.+|++..+..+. -| .-.++++.|.+ +++ .+++.-+.+.-. +-|.-..
T Consensus 74 --g-------Rd~~L~lw~ia~s~~i~-------i~-Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~ 136 (323)
T KOG0322|consen 74 --G-------RDPLLILWTIAYSAFIS-------IH-SIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDT 136 (323)
T ss_pred --C-------CCceEEEEEccCcceEE-------Ee-eeeccccccccceeccCCCcchhheecCCcccchhhhhccCcc
Confidence 2 37777778776543221 11 12333444433 211 111111111100 1111100
Q ss_pred cCCCC--CccccccccceeeehhhcccCCCcceEeecCCCceeeeeehhhhee----------ehhhcCCCccchhhhhH
Q 000722 153 RGRDI--PKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKL----------VRRYTGGHKGSISCLMT 220 (1331)
Q Consensus 153 ~~~~i--~~~~~h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~~~----------v~~~~~gH~~~V~~vaw 220 (1331)
...++ .......+.++|..+-.. ....-+++.|-.+|.|.+||+.++.. +.... .|..+|+++.
T Consensus 137 tqv~i~dd~~~~Klgsvmc~~~~~~--c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~a-sh~qpvlsld- 212 (323)
T KOG0322|consen 137 TQVQIADDSERSKLGSVMCQDKDHA--CGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNA-SHKQPVLSLD- 212 (323)
T ss_pred ceeEccCchhccccCceeeeecccc--ccceEEEEEeccCCeEEEEEccCCceeeccccccccccchh-hccCcceeee-
Confidence 00000 011223567777775211 11223577888999999999998632 22333 6999999998
Q ss_pred hhhccccEEEeecCCCceEEEEeccCCCccccccccceeeeccCcEEEEEechhccCCCcEEEeecCceeEeeeccchhh
Q 000722 221 FMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKE 300 (1331)
Q Consensus 221 f~~spdg~lLaSgs~DgtIrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~ 300 (1331)
+.+.-+.=++|+.+..+..|+++.....-. ....+.-..-+|..+.+-| |+++++|+|.|+.||||+.++..+
T Consensus 213 --yas~~~rGisgga~dkl~~~Sl~~s~gslq--~~~e~~lknpGv~gvrIRp---D~KIlATAGWD~RiRVyswrtl~p 285 (323)
T KOG0322|consen 213 --YASSCDRGISGGADDKLVMYSLNHSTGSLQ--IRKEITLKNPGVSGVRIRP---DGKILATAGWDHRIRVYSWRTLNP 285 (323)
T ss_pred --echhhcCCcCCCccccceeeeeccccCccc--ccceEEecCCCccceEEcc---CCcEEeecccCCcEEEEEeccCCc
Confidence 455555567888888999998875421111 1111233345689999998 999999999999999999998887
Q ss_pred hcccCCCCcccccccccccCCCCCCCcee-eeeecce--eeee
Q 000722 301 LRRIKPVPKLACHSVASWCHPRAPNLDIL-TCVKDSH--IWAI 340 (1331)
Q Consensus 301 l~~~~~~~~l~~H~~~V~svafspdg~lL-a~s~Dg~--IWdl 340 (1331)
+.. +..|...|.+++|+|+..++ ++|.|.+ +|++
T Consensus 286 LAV------LkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 286 LAV------LKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred hhh------hhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 766 78899999999999997766 6889987 6975
No 173
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.45 E-value=6.9e-13 Score=146.79 Aligned_cols=286 Identities=15% Similarity=0.223 Sum_probs=187.9
Q ss_pred ceeEeecCCCceeeeccccceEEeeeccCCcccchhhhhhhhhhcccccccCCCCcccccCCceeEEeeecchhhHHHHh
Q 000722 24 PWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRGGSVKQVNFYDDDVRFWQLW 103 (1331)
Q Consensus 24 ~~LaSgs~DGtV~VWD~~tg~~i~s~~~~~~~~i~~vspdg~~Lasgs~d~~g~~l~~l~gg~V~sVaf~DgtIrvWdl~ 103 (1331)
..+|++..+|.|++||..+++.+..|+.+. +.+
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~-------------------------------~~~---------------- 73 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPP-------------------------------ATT---------------- 73 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCC-------------------------------Ccc----------------
Confidence 468899999999999999999998888442 111
Q ss_pred hhccccccCCcccccccccccCCCCCC-CCceEEEEEeeccee-EeeeecccCCCCCcccccc-ccceeeehhhcccCCC
Q 000722 104 RNRAAAAEAPTAVSNVTSGFASPPPST-KGRHFLVICCVNKAI-FLDLVTMRGRDIPKQELDN-KSLVCMEFLSRSAVGD 180 (1331)
Q Consensus 104 tg~~l~~~~~~~~~~~~~~V~svafsp-dg~~lLasgs~d~iI-vwDl~t~~~~~i~~~~~h~-~~V~~Vaf~P~s~Spd 180 (1331)
+.+.|.. ++.+.+.+|+.|+.+ +||+++...........+. .+..|++- .-+
T Consensus 74 --------------------N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~-----nck 128 (376)
T KOG1188|consen 74 --------------------NGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDL-----NCK 128 (376)
T ss_pred --------------------cceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeec-----cCc
Confidence 1122222 244577788888766 8999986554444444444 56677777 446
Q ss_pred cceEeecC----CCceeeeeehhhhee-ehhhcCCCccchhhhhHhhhccccEEEeecCCCceEEEEeccCCCccccccc
Q 000722 181 VPLVAFGS----SDGVIRVLSMISWKL-VRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVP 255 (1331)
Q Consensus 181 g~~LasGs----~DGtIrlWDl~t~~~-v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrVWDl~tg~~~~~~~~ 255 (1331)
++.+++|+ .|-.|.+||++..+. +..+...|...|++++ | .+.+.++|+|||.||.|.++|+....... +
T Consensus 129 ~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lr-F-HP~~pnlLlSGSvDGLvnlfD~~~d~EeD---a 203 (376)
T KOG1188|consen 129 KNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLR-F-HPSDPNLLLSGSVDGLVNLFDTKKDNEED---A 203 (376)
T ss_pred CCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEE-e-cCCCCCeEEeecccceEEeeecCCCcchh---h
Confidence 77888886 477899999998766 7777779999999998 2 45567899999999999999998653221 2
Q ss_pred cceeeeccCcEEEEEechhccCCCcEEEeecCceeEeeeccchhhhcccCCCCccccc------ccccccCCCCCC-Cc-
Q 000722 256 KLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACH------SVASWCHPRAPN-LD- 327 (1331)
Q Consensus 256 ~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H------~~~V~svafspd-g~- 327 (1331)
+...-.|...|.++.|+. +....|.+-+...+..+|+++.+.+...+......... ...+... .+|. ..
T Consensus 204 L~~viN~~sSI~~igw~~--~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~-~~~~~~~~ 280 (376)
T KOG1188|consen 204 LLHVINHGSSIHLIGWLS--KKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINE-HSPGDKDT 280 (376)
T ss_pred HHHhhcccceeeeeeeec--CCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeec-ccCCCcce
Confidence 222344777899999997 24457889999999999999988866554322111110 0111111 1122 22
Q ss_pred eeeeee-cc--eeeeeecCccccccccccccccCCCccccccccceEEEEEEeccCCccEeeecceeEEEEeecCC
Q 000722 328 ILTCVK-DS--HIWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDP 400 (1331)
Q Consensus 328 lLa~s~-Dg--~IWdl~~~~~~~l~~~~~~~~~~~~~~~l~~h~~~~I~~la~sp~~~~lLAtGs~DG~Il~VWDl 400 (1331)
...++. -+ +++-+... ........+..+.+++..-|..+.|.- .+.++.+|+.||.+ .+|..
T Consensus 281 ~~l~g~~~n~~~~~~~~~~---------~s~~~~~~~a~l~g~~~eiVR~i~~~~-~~~~l~TGGEDG~l-~~Wk~ 345 (376)
T KOG1188|consen 281 CALAGTDSNKGTIFPLVDT---------SSGSLLTEPAILQGGHEEIVRDILFDV-KNDVLYTGGEDGLL-QAWKV 345 (376)
T ss_pred EEEeccccCceeEEEeeec---------ccccccCccccccCCcHHHHHHHhhhc-ccceeeccCCCceE-EEEec
Confidence 222222 22 34433310 011222345566675554777888875 67789999999998 79974
No 174
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.44 E-value=3.4e-12 Score=148.90 Aligned_cols=292 Identities=26% Similarity=0.399 Sum_probs=202.9
Q ss_pred ccccCCCcEEEEEeecCCceeEeecCCCceeeeccccce-EEeeeccCCcccchhhhhhhhhhcccccccCCCCcccccC
Q 000722 6 AFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQ-VIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRG 84 (1331)
Q Consensus 6 ~L~gHs~~V~~lafSPdg~~LaSgs~DGtV~VWD~~tg~-~i~s~~~~~~~~i~~vspdg~~Lasgs~d~~g~~l~~l~g 84 (1331)
.+.+|...|.++.|++.+..++.++.|+.+.+|+...+. .+..+...+.
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~------------------------------ 109 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHD------------------------------ 109 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCC------------------------------
Confidence 467899999999999999999999999999999998766 4444442110
Q ss_pred CceeEEeeecchhhHHHHhhhccccccCCcccccccccccCCCC-CCCCceEEEEEee-ccee-EeeeecccCCCCCccc
Q 000722 85 GSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPP-STKGRHFLVICCV-NKAI-FLDLVTMRGRDIPKQE 161 (1331)
Q Consensus 85 g~V~sVaf~DgtIrvWdl~tg~~l~~~~~~~~~~~~~~V~svaf-spdg~~lLasgs~-d~iI-vwDl~t~~~~~i~~~~ 161 (1331)
..+..+.+ ++++..++...+. ++.+ +||... .........
T Consensus 110 ------------------------------------~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~-~~~~~~~~~ 152 (466)
T COG2319 110 ------------------------------------SSVSKLALSSPDGNSILLASSSLDGTVKLWDLST-PGKLIRTLE 152 (466)
T ss_pred ------------------------------------CceeeEEEECCCcceEEeccCCCCccEEEEEecC-CCeEEEEEe
Confidence 00111112 4444424444333 5555 788775 112344578
Q ss_pred cccccceeeehhhcccCCCcceEeecCC-CceeeeeehhhheeehhhcCCCccchhhhhHhhhccccE-EEeecCCCceE
Q 000722 162 LDNKSLVCMEFLSRSAVGDVPLVAFGSS-DGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEA-LLVSGGSDGLL 239 (1331)
Q Consensus 162 ~h~~~V~~Vaf~P~s~Spdg~~LasGs~-DGtIrlWDl~t~~~v~~~~~gH~~~V~~vawf~~spdg~-lLaSgs~DgtI 239 (1331)
.|...|.++.| ++++.++++++. |+.+++|+...+..+..+. +|...|.++. ++|++. .+++++.|+.|
T Consensus 153 ~~~~~v~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~---~~~~~~~~~~~~~~d~~i 223 (466)
T COG2319 153 GHSESVTSLAF-----SPDGKLLASGSSLDGTIKLWDLRTGKPLSTLA-GHTDPVSSLA---FSPDGGLLIASGSSDGTI 223 (466)
T ss_pred cCcccEEEEEE-----CCCCCEEEecCCCCCceEEEEcCCCceEEeec-cCCCceEEEE---EcCCcceEEEEecCCCcE
Confidence 88999999999 678888888886 9999999999877887776 7999999998 458887 66666999999
Q ss_pred EEEeccCCCccccccccceeeeccCcEEEEEechhccCCCcEEEeecCceeEeeeccchhh-hcccCCCCcccccccccc
Q 000722 240 ILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKE-LRRIKPVPKLACHSVASW 318 (1331)
Q Consensus 240 rVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~-l~~~~~~~~l~~H~~~V~ 318 (1331)
++||...+..... .+.+|...+ ...|+| ++.++++++.|+.+++|+...... +.. ..+|...+.
T Consensus 224 ~~wd~~~~~~~~~-----~~~~~~~~~-~~~~~~---~~~~~~~~~~d~~~~~~~~~~~~~~~~~------~~~~~~~v~ 288 (466)
T COG2319 224 RLWDLSTGKLLRS-----TLSGHSDSV-VSSFSP---DGSLLASGSSDGTIRLWDLRSSSSLLRT------LSGHSSSVL 288 (466)
T ss_pred EEEECCCCcEEee-----ecCCCCcce-eEeECC---CCCEEEEecCCCcEEEeeecCCCcEEEE------EecCCccEE
Confidence 9998875554331 367777775 448998 668888999999999999987664 222 256788899
Q ss_pred cCCCCCCCce-eeeeecce--eeeeecCccccccccccccccCCCccccccccceEEEEEEeccCCccEeeec-ceeEEE
Q 000722 319 CHPRAPNLDI-LTCVKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATG-TNVGVI 394 (1331)
Q Consensus 319 svafspdg~l-La~s~Dg~--IWdl~~~~~~~l~~~~~~~~~~~~~~~l~~h~~~~I~~la~sp~~~~lLAtG-s~DG~I 394 (1331)
++.|+|++.. ++++.|+. +|+.......... ....|.. .+..+.| +.++..++.+ ..|+.+
T Consensus 289 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~-------------~~~~~~~-~~~~~~~-~~~~~~~~~~~~~d~~~ 353 (466)
T COG2319 289 SVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSL-------------TLKGHEG-PVSSLSF-SPDGSLLVSGGSDDGTI 353 (466)
T ss_pred EEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEe-------------eecccCC-ceEEEEE-CCCCCEEEEeecCCCcE
Confidence 9999997664 46666753 7977653211000 0123444 6888888 4332334444 677776
Q ss_pred EeecCCCCCC
Q 000722 395 ISEFDPRSLP 404 (1331)
Q Consensus 395 l~VWDlr~~p 404 (1331)
++|+.....
T Consensus 354 -~~~~~~~~~ 362 (466)
T COG2319 354 -RLWDLRTGK 362 (466)
T ss_pred -EeeecCCCc
Confidence 679876543
No 175
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.44 E-value=4.9e-13 Score=153.28 Aligned_cols=300 Identities=17% Similarity=0.213 Sum_probs=206.4
Q ss_pred ccccccCCCcEEEEEeecCCceeEeecCCCceeeeccccceEEeeeccCCcccchhhh----hhhhhhcccccccCCCCc
Q 000722 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVG----AKLEKLAEGELEHKGKPT 79 (1331)
Q Consensus 4 l~~L~gHs~~V~~lafSPdg~~LaSgs~DGtV~VWD~~tg~~i~s~~~~~~~~i~~vs----pdg~~Lasgs~d~~g~~l 79 (1331)
...|.+|.+.|..|.|...|.+|++|+.|..|.+|||.++.....|..+|...+.... .+.+.++.++
T Consensus 135 ~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s-------- 206 (559)
T KOG1334|consen 135 QKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSS-------- 206 (559)
T ss_pred hhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceecc--------
Confidence 5678999999999999999999999999999999999999999999988866554332 2233333333
Q ss_pred ccccCCceeEEeeecchhhHHHHhhhccccccCCcccccccccccCCCCCCCCceEEEEEeeccee-EeeeecccCCCCC
Q 000722 80 EAMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIP 158 (1331)
Q Consensus 80 ~~l~gg~V~sVaf~DgtIrvWdl~tg~~l~~~~~~~~~~~~~~V~svafspdg~~lLasgs~d~iI-vwDl~t~~~~~i~ 158 (1331)
.||.||+=.+..... .+.....+.|...|..++.-|+.++-|.+++.|+.+ -+|+.........
T Consensus 207 -------------~dgqvr~s~i~~t~~--~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~ 271 (559)
T KOG1334|consen 207 -------------RDGQVRVSEILETGY--VENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKF 271 (559)
T ss_pred -------------ccCceeeeeeccccc--eecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCcccee
Confidence 244444433221111 111233445577788888889888889999999888 4688765433222
Q ss_pred cc-ccccc---cceeeehhhcccCCCcceEeecCCCceeeeeehhhh------eeehhhcCC-----CccchhhhhHhhh
Q 000722 159 KQ-ELDNK---SLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISW------KLVRRYTGG-----HKGSISCLMTFMA 223 (1331)
Q Consensus 159 ~~-~~h~~---~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~------~~v~~~~~g-----H~~~V~~vawf~~ 223 (1331)
.- ..+.. ....++..|. +...+++|+.|..+|+||.+.- ..+..+... ..-.|+|+. +
T Consensus 272 ~cr~~~~~~~v~L~~Ia~~P~----nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~---Y 344 (559)
T KOG1334|consen 272 VCREADEKERVGLYTIAVDPR----NTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLV---Y 344 (559)
T ss_pred eeeccCCccceeeeeEecCCC----CccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEE---e
Confidence 21 22222 5677888552 3458999999999999998742 123444322 245688887 6
Q ss_pred ccccEEEeecCCCceEEEEeccCCCc-------cccccccceeeeccC--cEEEEEechhccCCCcEEEeecCceeEeee
Q 000722 224 SSGEALLVSGGSDGLLILWSADHGQD-------SRELVPKLSLKAHDG--GVVAVELSRVMGGSPQLITIGADKTLAIWD 294 (1331)
Q Consensus 224 spdg~lLaSgs~DgtIrVWDl~tg~~-------~~~~~~~~~l~gH~~--~V~svafsp~~~dg~~LaSgs~Dg~IrIWD 294 (1331)
+.++.-|+++-.|-.|.++.-..+.- .++......++||.. .|.++-|.- +...|+++||+=|.|-||+
T Consensus 345 sh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfG--PrsEyVvSGSDCGhIFiW~ 422 (559)
T KOG1334|consen 345 SHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFG--PRSEYVVSGSDCGHIFIWD 422 (559)
T ss_pred cCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeecc--CccceEEecCccceEEEEe
Confidence 76666666667888899985443221 001112233688865 477887764 3688999999999999999
Q ss_pred ccchhhhcccCCCCcccccccccccCCCCCCCceeee-ee--cceeeeee
Q 000722 295 TVSFKELRRIKPVPKLACHSVASWCHPRAPNLDILTC-VK--DSHIWAIE 341 (1331)
Q Consensus 295 l~t~~~l~~~~~~~~l~~H~~~V~svafspdg~lLa~-s~--Dg~IWdl~ 341 (1331)
-.+++.++- +.+...-|.|+.=||.-.+|++ |- |-+||--.
T Consensus 423 K~t~eii~~------MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP~ 466 (559)
T KOG1334|consen 423 KKTGEIIRF------MEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTPL 466 (559)
T ss_pred cchhHHHHH------hhcccceEeccCCCCCCchhhccCCccceeeecCC
Confidence 999998877 4555558899999999888854 43 44689764
No 176
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.43 E-value=5.5e-13 Score=165.95 Aligned_cols=359 Identities=14% Similarity=0.155 Sum_probs=197.7
Q ss_pred ccccccCCCcEEEEEeecCC-ceeEeecCCCceeeeccccce-------EEeeeccCCcccchhhhhhhhhhcccccccC
Q 000722 4 LKAFRPTNDKIVKIQLHPTH-PWLVTADASDHVSVWNWEHRQ-------VIYELKAGGVDQRRLVGAKLEKLAEGELEHK 75 (1331)
Q Consensus 4 l~~L~gHs~~V~~lafSPdg-~~LaSgs~DGtV~VWD~~tg~-------~i~s~~~~~~~~i~~vspdg~~Lasgs~d~~ 75 (1331)
+.+|..|+..|..++.++.. .+++||+.||+|+|||.+.-. ...++... ...+.
T Consensus 1041 VAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~-~sr~~----------------- 1102 (1431)
T KOG1240|consen 1041 VAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPE-GSRVE----------------- 1102 (1431)
T ss_pred eehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEecc-CCceE-----------------
Confidence 66788999999999998876 899999999999999975311 11111100 00000
Q ss_pred CCCcccccCCceeEEeeecchhhHHHHhhh--cccc-ccCCcccccc-cccccCCCCCCCCc-eEEEEEe-ecceeEeee
Q 000722 76 GKPTEAMRGGSVKQVNFYDDDVRFWQLWRN--RAAA-AEAPTAVSNV-TSGFASPPPSTKGR-HFLVICC-VNKAIFLDL 149 (1331)
Q Consensus 76 g~~l~~l~gg~V~sVaf~DgtIrvWdl~tg--~~l~-~~~~~~~~~~-~~~V~svafspdg~-~lLasgs-~d~iIvwDl 149 (1331)
++.....+.-.+++-.||.|++.++... +... ........+. ...|..-+|....+ +.++.+. ..+++.||.
T Consensus 1103 --~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~ 1180 (1431)
T KOG1240|consen 1103 --KVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDT 1180 (1431)
T ss_pred --EEEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecc
Confidence 1111111222223336777777666541 1111 1111111111 12233333433222 2444444 445668998
Q ss_pred ecccCCCCCccccccccceeeehhhcccCCCcceEeecCCCceeeeeehhhheeehhhcCCCccchhhhhHhhhccccEE
Q 000722 150 VTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEAL 229 (1331)
Q Consensus 150 ~t~~~~~i~~~~~h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~~~v~~~~~gH~~~V~~vawf~~spdg~l 229 (1331)
.+.............+.|++++. +|.++|+++|+..|.+.+||++-+..+.....++..+++.+..+.+.+....
T Consensus 1181 r~~~~~w~lk~~~~hG~vTSi~i-----dp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~ 1255 (1431)
T KOG1240|consen 1181 RMRHDAWRLKNQLRHGLVTSIVI-----DPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESV 1255 (1431)
T ss_pred hhhhhHHhhhcCccccceeEEEe-----cCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCce
Confidence 87543333333445689999999 7789999999999999999999998888887677788887753344554445
Q ss_pred EeecC--CCceEEEEeccCCCcccccccc-----ce--ee------eccCcEEEEEechhccCCCcEEEeecCceeEeee
Q 000722 230 LVSGG--SDGLLILWSADHGQDSRELVPK-----LS--LK------AHDGGVVAVELSRVMGGSPQLITIGADKTLAIWD 294 (1331)
Q Consensus 230 LaSgs--~DgtIrVWDl~tg~~~~~~~~~-----~~--l~------gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWD 294 (1331)
.++++ ..+.|.+|++.+|.+...+... .. +. .+.-......+. +.+.++.+|+.|..||.||
T Consensus 1256 ~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~---~~~~~~ltggsd~kIR~wD 1332 (1431)
T KOG1240|consen 1256 SVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVC---EKNGFLLTGGSDMKIRKWD 1332 (1431)
T ss_pred EEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecc---cCCceeeecCCccceeecc
Confidence 55444 5788999999988654322110 00 00 111112222333 2567999999999999999
Q ss_pred ccchhhhcccCCCCcccccccccccCCCCCCCceeeeee--ccee-eeeecCccccccccccccccCCCccccccccceE
Q 000722 295 TVSFKELRRIKPVPKLACHSVASWCHPRAPNLDILTCVK--DSHI-WAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLR 371 (1331)
Q Consensus 295 l~t~~~l~~~~~~~~l~~H~~~V~svafspdg~lLa~s~--Dg~I-Wdl~~~~~~~l~~~~~~~~~~~~~~~l~~h~~~~ 371 (1331)
........ . ...+..........+.+-.++.++. |-.| .....+ .....+.. ......+...-..|.+ .
T Consensus 1333 ~~~p~~ss-~----~~~~~s~~~~~~~~s~~~~~i~~~~~i~e~i~~~~tv~-~t~~~~~~-~~~~~~~~~ps~~H~d-~ 1404 (1431)
T KOG1240|consen 1333 PTRPEISS-Y----AVPGPSTSYSTNSESYDLSTIPGSQFIDEFIIYQQTVG-LTEALREN-QKLRPGPSDPSTYHHD-P 1404 (1431)
T ss_pred CCCccccc-c----cccCccccccccchhccccccCCCccchhhhhhhhhcC-chhhcccc-cccccCCCCCcccccc-h
Confidence 87543221 0 0122222222222222222333321 1111 111110 00000000 0000111122235667 8
Q ss_pred EEEEEeccCCccEeeecceeEEEEeecC
Q 000722 372 VYCMVAHSLQPHLVATGTNVGVIISEFD 399 (1331)
Q Consensus 372 I~~la~sp~~~~lLAtGs~DG~Il~VWD 399 (1331)
|+.|++......+|++.+.||.| ++|.
T Consensus 1405 Itdma~~~~~q~llvs~s~dG~I-kiWk 1431 (1431)
T KOG1240|consen 1405 ITDMATLKSEQPLLVSSSRDGVI-KIWK 1431 (1431)
T ss_pred hhhhhhhccCccEEEEecCCCee-eecC
Confidence 99999988767789999999998 8994
No 177
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.41 E-value=2.9e-13 Score=162.41 Aligned_cols=221 Identities=21% Similarity=0.302 Sum_probs=154.2
Q ss_pred CCCccccccccceeeehhhcccCCCcceEeecCCCceeeeeehhhheeehhhcCCCccchhhhhHhhhccccEEEeecCC
Q 000722 156 DIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGS 235 (1331)
Q Consensus 156 ~i~~~~~h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~ 235 (1331)
.+..+.+|...|+|+.| ...|.+|++|++|..|+||.+.+..++.... ||.+.|+.++ .+.+..+++++|.
T Consensus 182 ~ikrLlgH~naVyca~f-----Drtg~~Iitgsdd~lvKiwS~et~~~lAs~r-Ghs~ditdla---vs~~n~~iaaaS~ 252 (1113)
T KOG0644|consen 182 NIKRLLGHRNAVYCAIF-----DRTGRYIITGSDDRLVKIWSMETARCLASCR-GHSGDITDLA---VSSNNTMIAAASN 252 (1113)
T ss_pred HHHHHHhhhhheeeeee-----ccccceEeecCccceeeeeeccchhhhccCC-CCccccchhc---cchhhhhhhhccc
Confidence 34556789999999999 7889999999999999999999999999998 9999999998 7888889999999
Q ss_pred CceEEEEeccCCCccccccccceeeeccCcEEEEEechhccCCCcEEEeecCceeEeeeccchhhhccc-CCCCcccccc
Q 000722 236 DGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRI-KPVPKLACHS 314 (1331)
Q Consensus 236 DgtIrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~-~~~~~l~~H~ 314 (1331)
|..|++|.+.++.. +..+.+|++.|++++|+|. .+.+.||++++||.+ ...+... .+. .+. ..
T Consensus 253 D~vIrvWrl~~~~p------vsvLrghtgavtaiafsP~-------~sss~dgt~~~wd~r-~~~~~y~prp~-~~~-~~ 316 (1113)
T KOG0644|consen 253 DKVIRVWRLPDGAP------VSVLRGHTGAVTAIAFSPR-------ASSSDDGTCRIWDAR-LEPRIYVPRPL-KFT-EK 316 (1113)
T ss_pred CceEEEEecCCCch------HHHHhccccceeeeccCcc-------ccCCCCCceEecccc-ccccccCCCCC-Ccc-cc
Confidence 99999999998874 4458999999999999992 278899999999988 2111110 110 111 11
Q ss_pred cccccCCCCCCCc-eeeeeecce--eeeeecCccc----ccc------------------ccccccccCCCccccccccc
Q 000722 315 VASWCHPRAPNLD-ILTCVKDSH--IWAIEHPTYS----ALT------------------RPLCELSSLVPPQVLAHHKK 369 (1331)
Q Consensus 315 ~~V~svafspdg~-lLa~s~Dg~--IWdl~~~~~~----~l~------------------~~~~~~~~~~~~~~l~~h~~ 369 (1331)
.-+.++.|...+. +++++.|+. .|.+..-.+. .+. ...+..........+.+|.+
T Consensus 317 ~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd 396 (1113)
T KOG0644|consen 317 DLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSD 396 (1113)
T ss_pred cceeeeeccccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhccccc
Confidence 2233444444433 445554442 2221100000 000 00011111122344556777
Q ss_pred eEEEEEEeccCCccEeeecceeEEEEeecCCCCC
Q 000722 370 LRVYCMVAHSLQPHLVATGTNVGVIISEFDPRSL 403 (1331)
Q Consensus 370 ~~I~~la~sp~~~~lLAtGs~DG~Il~VWDlr~~ 403 (1331)
.++.+.+||-+.....+++.||.. .|||+-+.
T Consensus 397 -~~yvLd~Hpfn~ri~msag~dgst-~iwdi~eg 428 (1113)
T KOG0644|consen 397 -EVYVLDVHPFNPRIAMSAGYDGST-IIWDIWEG 428 (1113)
T ss_pred -ceeeeeecCCCcHhhhhccCCCce-EeeecccC
Confidence 899999999888888888999988 59998654
No 178
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.40 E-value=7.6e-13 Score=147.16 Aligned_cols=326 Identities=13% Similarity=0.083 Sum_probs=206.4
Q ss_pred ccccccCCCcEEEEEeecCCceeEeecCCCceeeeccccceEEeeeccCCcccchhhhhhhhhhcccccccCCCCccccc
Q 000722 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMR 83 (1331)
Q Consensus 4 l~~L~gHs~~V~~lafSPdg~~LaSgs~DGtV~VWD~~tg~~i~s~~~~~~~~i~~vspdg~~Lasgs~d~~g~~l~~l~ 83 (1331)
.+-+.+|.+.|.++.||.+++||++|+.|..++||+++.-..-++.+
T Consensus 49 qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~K--------------------------------- 95 (609)
T KOG4227|consen 49 QKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPK--------------------------------- 95 (609)
T ss_pred hhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCC---------------------------------
Confidence 45678999999999999999999999999999999986311000000
Q ss_pred CCceeEEeeecchhhHHHHhhhccccccCCcccccccccccCCCCCCCCceEEEEEeecceeEe-eeecccCCCCCcccc
Q 000722 84 GGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFL-DLVTMRGRDIPKQEL 162 (1331)
Q Consensus 84 gg~V~sVaf~DgtIrvWdl~tg~~l~~~~~~~~~~~~~~V~svafspdg~~lLasgs~d~iIvw-Dl~t~~~~~i~~~~~ 162 (1331)
.+.....+|.+.|.|++|..... ++.+|+.++.++. |+.+.+...+.....
T Consensus 96 ---------------------------PI~~~~~~H~SNIF~L~F~~~N~-~~~SG~~~~~VI~HDiEt~qsi~V~~~~~ 147 (609)
T KOG4227|consen 96 ---------------------------PIGVMEHPHRSNIFSLEFDLENR-FLYSGERWGTVIKHDIETKQSIYVANENN 147 (609)
T ss_pred ---------------------------CceeccCccccceEEEEEccCCe-eEecCCCcceeEeeecccceeeeeecccC
Confidence 01222334456778888887665 8888888877755 988865444333333
Q ss_pred ccccceeeehhhcccCCCcceEeecCCCceeeeeehhhhe-eehhhcCC-CccchhhhhHhhhcc-ccEEEeecCCCceE
Q 000722 163 DNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWK-LVRRYTGG-HKGSISCLMTFMASS-GEALLVSGGSDGLL 239 (1331)
Q Consensus 163 h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~~-~v~~~~~g-H~~~V~~vawf~~sp-dg~lLaSgs~DgtI 239 (1331)
..+.|+.+.. +|..+.+++.+.++.|.+||.+... .+..+..+ .......+. |+| ...+|++.+..+-+
T Consensus 148 ~~~~VY~m~~-----~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~---F~P~~P~Li~~~~~~~G~ 219 (609)
T KOG4227|consen 148 NRGDVYHMDQ-----HPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAE---FHPETPALILVNSETGGP 219 (609)
T ss_pred cccceeeccc-----CCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeee---ecCCCceeEEeccccCCC
Confidence 4568999999 5578899999999999999998644 22222111 122233333 444 45688899999999
Q ss_pred EEEeccCCCc-cccccccceeeeccCcEEEEEechhccCCCcEEEeecCceeEeeeccchhhhc-ccCCCCccccccccc
Q 000722 240 ILWSADHGQD-SRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELR-RIKPVPKLACHSVAS 317 (1331)
Q Consensus 240 rVWDl~tg~~-~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~-~~~~~~~l~~H~~~V 317 (1331)
-+||.+.... +........+......-.++.|+| +|..|++--....-.+||+-+..|.. .+..-..--.....+
T Consensus 220 ~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~---~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~ 296 (609)
T KOG4227|consen 220 NVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSP---SGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTI 296 (609)
T ss_pred CceeeccccchHHhhhccccCcccchhhhheeeCC---CCCeehhhhccCCCEEeeeecccceeEeccCCCCcceeeeee
Confidence 9999986542 111111111222122235688998 78888877666666778887654421 111000011122345
Q ss_pred ccCCCCCCCceeeeeecc--eeeeeecCcc----ccccccc----cccccCCCccccccccceEEEEEEeccCCccEeee
Q 000722 318 WCHPRAPNLDILTCVKDS--HIWAIEHPTY----SALTRPL----CELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVAT 387 (1331)
Q Consensus 318 ~svafspdg~lLa~s~Dg--~IWdl~~~~~----~~l~~~~----~~~~~~~~~~~l~~h~~~~I~~la~sp~~~~lLAt 387 (1331)
.+++|-.|..+++|+.+- .+|.+....- .+....- ...--......+++|.. -+..+.|+| ..++|++
T Consensus 297 KS~~F~~D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRS-v~NQVRF~~-H~~~l~S 374 (609)
T KOG4227|consen 297 KSMTFIDDYTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRS-VPNQVRFSQ-HNNLLVS 374 (609)
T ss_pred eeeeeecceeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccc-cccceeecC-CcceEec
Confidence 678888887777777664 3787753211 1111100 01111234567889988 889999999 5788888
Q ss_pred cceeEEEEeecCCCCCC
Q 000722 388 GTNVGVIISEFDPRSLP 404 (1331)
Q Consensus 388 Gs~DG~Il~VWDlr~~p 404 (1331)
.+-...+ ++|..-+.|
T Consensus 375 SGVE~~~-KlWS~~r~P 390 (609)
T KOG4227|consen 375 SGVENSF-KLWSDHRLP 390 (609)
T ss_pred cchhhhe-eccccccCC
Confidence 8888887 899875544
No 179
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.40 E-value=2.9e-12 Score=138.77 Aligned_cols=214 Identities=18% Similarity=0.255 Sum_probs=154.5
Q ss_pred cCCCcEEEEEeecCCceeEeecCCCceeeeccccceE-EeeeccCCcccchhhhhhhhhhcccccccCCCCcccccCCce
Q 000722 9 PTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQV-IYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRGGSV 87 (1331)
Q Consensus 9 gHs~~V~~lafSPdg~~LaSgs~DGtV~VWD~~tg~~-i~s~~~~~~~~i~~vspdg~~Lasgs~d~~g~~l~~l~gg~V 87 (1331)
.|-++|.|+.|.|++..|++-. |..|.+|++..+.. +..+.... + .
T Consensus 121 eavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~-----------------s--------------~- 167 (370)
T KOG1007|consen 121 EAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSE-----------------S--------------A- 167 (370)
T ss_pred HHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccc-----------------c--------------c-
Confidence 3556999999999999998875 88999999987554 23222110 0 0
Q ss_pred eEEeeecchhhHHHHhhhccccccCCcccccccccccCCCCCC--CCceEEEEEeecceeEeeeecccCCCCCccccccc
Q 000722 88 KQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPST--KGRHFLVICCVNKAIFLDLVTMRGRDIPKQELDNK 165 (1331)
Q Consensus 88 ~sVaf~DgtIrvWdl~tg~~l~~~~~~~~~~~~~~V~svafsp--dg~~lLasgs~d~iIvwDl~t~~~~~i~~~~~h~~ 165 (1331)
+ +...+++-+|+| +|. .+++.++..+-.||.++++. .......|..
T Consensus 168 -----------------------------e-~~~~ftsg~WspHHdgn-qv~tt~d~tl~~~D~RT~~~-~~sI~dAHgq 215 (370)
T KOG1007|consen 168 -----------------------------E-MRHSFTSGAWSPHHDGN-QVATTSDSTLQFWDLRTMKK-NNSIEDAHGQ 215 (370)
T ss_pred -----------------------------c-ccceecccccCCCCccc-eEEEeCCCcEEEEEccchhh-hcchhhhhcc
Confidence 0 012234455666 665 77777777777999998754 3345678899
Q ss_pred cceeeehhhcccCCCcceEeecCCCceeeeeehhhh-eeehhhcCCCccchhhhhHhhhccccEEEeecCCCceEEEEec
Q 000722 166 SLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISW-KLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSA 244 (1331)
Q Consensus 166 ~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~-~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrVWDl 244 (1331)
.|+.+.|.|+ ...+|++|++||.|||||.+.- ..+..+. +|.+.|.++. | .+....++++|+.|..|.+|..
T Consensus 216 ~vrdlDfNpn----kq~~lvt~gDdgyvriWD~R~tk~pv~el~-~HsHWvW~VR-f-n~~hdqLiLs~~SDs~V~Lsca 288 (370)
T KOG1007|consen 216 RVRDLDFNPN----KQHILVTCGDDGYVRIWDTRKTKFPVQELP-GHSHWVWAVR-F-NPEHDQLILSGGSDSAVNLSCA 288 (370)
T ss_pred eeeeccCCCC----ceEEEEEcCCCccEEEEeccCCCccccccC-CCceEEEEEE-e-cCccceEEEecCCCceeEEEec
Confidence 9999999652 3568999999999999999854 5566665 9999999998 2 4445678999999999999976
Q ss_pred cCCCc------------------cccc-----cccceeeeccCcEEEEEechhccCCCcEEEeecCceeEeeecc
Q 000722 245 DHGQD------------------SREL-----VPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTV 296 (1331)
Q Consensus 245 ~tg~~------------------~~~~-----~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~ 296 (1331)
..-.. .... ..+.++..|++.|.+++|+.. +.-++++-|.||.+.|=++.
T Consensus 289 ~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsa--dPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 289 SSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSA--DPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred cccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccC--CCeeEEEeccCceEEeecCC
Confidence 43110 0000 112356789999999999983 66688899999999886654
No 180
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.38 E-value=6.9e-12 Score=153.46 Aligned_cols=232 Identities=16% Similarity=0.145 Sum_probs=160.6
Q ss_pred eeEeeeecccCCCCCccccccccceeeehhhcccCCCcceEeecCCCceeeeeehhhhee-----ehhhcCCCccchhhh
Q 000722 144 AIFLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKL-----VRRYTGGHKGSISCL 218 (1331)
Q Consensus 144 iIvwDl~t~~~~~i~~~~~h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~~~-----v~~~~~gH~~~V~~v 218 (1331)
.++|++.... .. .....-...|+|+.|+|. +..+++.|+.+|.|.+||++.+.. +......|..+++.+
T Consensus 224 ~~vW~~~~p~-~P-e~~~~~~s~v~~~~f~p~----~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~v 297 (555)
T KOG1587|consen 224 LLVWSLKNPN-TP-ELVLESPSEVTCLKFCPF----DPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAV 297 (555)
T ss_pred EEEEecCCCC-Cc-eEEEecCCceeEEEeccC----CcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEE
Confidence 4477776531 11 111223678999999763 567899999999999999987644 222234688899999
Q ss_pred hHhhhccccEEEeecCCCceEEEEeccCCCccccccccceee------eccCcEEEEEechhccCCCcEEEeecCceeEe
Q 000722 219 MTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLK------AHDGGVVAVELSRVMGGSPQLITIGADKTLAI 292 (1331)
Q Consensus 219 awf~~spdg~lLaSgs~DgtIrVWDl~tg~~~~~~~~~~~l~------gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrI 292 (1331)
.|. .++.+.-|+++|.||.|..|+++.-..-.+........ .-...++++.|.+ .+...++.|+++|.|.-
T Consensus 298 vW~-~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~--~~p~~FiVGTe~G~v~~ 374 (555)
T KOG1587|consen 298 VWL-QNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEP--TDPNHFIVGTEEGKVYK 374 (555)
T ss_pred EEe-ccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeecc--CCCceEEEEcCCcEEEE
Confidence 886 45555779999999999999887543311100111111 1224689999999 47788999999999877
Q ss_pred e---eccchhhhcccCCCCcccccccccccCCCCCCCc--eeeeeecc--eeeeeecCccccccccccccccCCCccccc
Q 000722 293 W---DTVSFKELRRIKPVPKLACHSVASWCHPRAPNLD--ILTCVKDS--HIWAIEHPTYSALTRPLCELSSLVPPQVLA 365 (1331)
Q Consensus 293 W---Dl~t~~~l~~~~~~~~l~~H~~~V~svafspdg~--lLa~s~Dg--~IWdl~~~~~~~l~~~~~~~~~~~~~~~l~ 365 (1331)
- +++.... ..++.......|.+.|.++.++|=+. +++++ |- +||.-... ..++..+.
T Consensus 375 ~~r~g~~~~~~-~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~--------------~~Pl~~~~ 438 (555)
T KOG1587|consen 375 GCRKGYTPAPE-VSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVI--------------ASPLLSLD 438 (555)
T ss_pred EeccCCccccc-ccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCC--------------CCcchhhh
Confidence 3 3222221 23344556788899999999999766 44666 54 47876521 23455566
Q ss_pred cccceEEEEEEeccCCccEeeecceeEEEEeecCCCC
Q 000722 366 HHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPRS 402 (1331)
Q Consensus 366 ~h~~~~I~~la~sp~~~~lLAtGs~DG~Il~VWDlr~ 402 (1331)
.+.+ .+++++|||..+.+++++..||.+ .+||+..
T Consensus 439 ~~~~-~v~~vaWSptrpavF~~~d~~G~l-~iWDLl~ 473 (555)
T KOG1587|consen 439 SSPD-YVTDVAWSPTRPAVFATVDGDGNL-DIWDLLQ 473 (555)
T ss_pred hccc-eeeeeEEcCcCceEEEEEcCCCce-ehhhhhc
Confidence 6666 799999999999999999999998 8999864
No 181
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.36 E-value=9.9e-10 Score=130.19 Aligned_cols=224 Identities=22% Similarity=0.191 Sum_probs=146.8
Q ss_pred cEEeeehhhhhhhhcccCCCcceeeeecccCCchhhhHHHhhhcccc-----chhHHHHHhhcccccccccCCCccccee
Q 000722 885 GVLWLIDRYMCAHALSLSHPGIRCRCLAAYGDSVSAVKWASRLGREH-----HDDLAQFMLGMGYATEALHLPGISKRLE 959 (1331)
Q Consensus 885 ~~~~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~i~~~~-----~~~~a~fl~~~g~~e~Al~~~~ds~~~~ 959 (1331)
-+||-+=.+..+.-..|+..+=-|-. -|||.- +++..+++..| +-.+..| .|-.|||-.++-| --|
T Consensus 692 prLWrllAe~Al~Kl~l~tAE~AFVr---c~dY~G-ik~vkrl~~i~s~~~q~aei~~~---~g~feeaek~yld--~dr 762 (1189)
T KOG2041|consen 692 PRLWRLLAEYALFKLALDTAEHAFVR---CGDYAG-IKLVKRLRTIHSKEQQRAEISAF---YGEFEEAEKLYLD--ADR 762 (1189)
T ss_pred hHHHHHHHHHHHHHHhhhhHhhhhhh---hccccc-hhHHHHhhhhhhHHHHhHhHhhh---hcchhHhhhhhhc--cch
Confidence 34555555555555555444433321 144432 34444433332 2233444 3677899888877 334
Q ss_pred eeecc----ccchHHHHHHhhhhcccccccCCCCCCCChhhhcccccchhhHHHHHHHHHHHHHHHHhhhhccccccchH
Q 000722 960 FDLAM----QSNDLKRALQCLITMSNSRDIGQDHPGLDLNDILTLTTKKENIVEAVQGIVKFAKEFLDLIDAADATGQAN 1035 (1331)
Q Consensus 960 f~la~----~~g~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~~~al~~g~~~ 1035 (1331)
-|||| ++||.=+-+++. +.-+.+.++. -+|.---+.--.-....+|..-.++....|+.+
T Consensus 763 rDLAielr~klgDwfrV~qL~------r~g~~d~dD~----------~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e 826 (1189)
T KOG2041|consen 763 RDLAIELRKKLGDWFRVYQLI------RNGGSDDDDE----------GKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTE 826 (1189)
T ss_pred hhhhHHHHHhhhhHHHHHHHH------HccCCCcchH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchH
Confidence 45554 678888888887 4332220000 011111111111122468888888888889999
Q ss_pred HHHHHHHHHHhcccccccccccccccchhhhcccccchhhhhhhHHHHhhccChhhhhhhh-hcCchHHHHHHhhhhhhH
Q 000722 1036 IAREALKRLAAAGSVKGALQGHELRGLALRLANHGELTRLSGLVTNLISLGLGREAAFSAA-ILGDNALMEKAWQDTGML 1114 (1331)
Q Consensus 1036 ~a~~~~~~~~~~~~~~~~~~~~~~~~l~ll~~~~g~~~~l~~l~~~~~~~~~~~~~af~~~-~lgd~~~~~~~l~~~~~~ 1114 (1331)
--.+||.++..|+ +|+.|+.. ...|.+-|.+|+++-...|-- .-|..|+ -.++...++..-.+-+++
T Consensus 827 ~~~ecly~le~f~---------~LE~la~~--Lpe~s~llp~~a~mf~svGMC-~qAV~a~Lr~s~pkaAv~tCv~LnQW 894 (1189)
T KOG2041|consen 827 NQIECLYRLELFG---------ELEVLART--LPEDSELLPVMADMFTSVGMC-DQAVEAYLRRSLPKAAVHTCVELNQW 894 (1189)
T ss_pred hHHHHHHHHHhhh---------hHHHHHHh--cCcccchHHHHHHHHHhhchH-HHHHHHHHhccCcHHHHHHHHHHHHH
Confidence 9999999997777 66666654 356778889999999999987 7888888 789999999999999999
Q ss_pred HHHHHhhhccCCCcHHHHHHHHHHHHhhhcc
Q 000722 1115 AEAVLHAHAHGRPSLKNLVEAWNKMLQKEVD 1145 (1331)
Q Consensus 1115 ~~A~~~A~~~~~~~~~~~~~~w~~~l~~~~~ 1145 (1331)
.||+.+|+.|.-+++..++.+-+..|-....
T Consensus 895 ~~avelaq~~~l~qv~tliak~aaqll~~~~ 925 (1189)
T KOG2041|consen 895 GEAVELAQRFQLPQVQTLIAKQAAQLLADAN 925 (1189)
T ss_pred HHHHHHHHhccchhHHHHHHHHHHHHHhhcc
Confidence 9999999999999998888877777644433
No 182
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.36 E-value=1.2e-12 Score=143.60 Aligned_cols=238 Identities=14% Similarity=0.151 Sum_probs=168.4
Q ss_pred cEEEEEee-------cCCceeEeecCCCceeeeccccceEEeeeccC-Ccccchhh-----hhhhhhhcccccccCCCCc
Q 000722 13 KIVKIQLH-------PTHPWLVTADASDHVSVWNWEHRQVIYELKAG-GVDQRRLV-----GAKLEKLAEGELEHKGKPT 79 (1331)
Q Consensus 13 ~V~~lafS-------Pdg~~LaSgs~DGtV~VWD~~tg~~i~s~~~~-~~~~i~~v-----spdg~~Lasgs~d~~g~~l 79 (1331)
.|...+|- |+..++++.+.+.-|++||.-+|++..++... |.+++... +++|..|..|
T Consensus 106 tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG--------- 176 (406)
T KOG2919|consen 106 TVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG--------- 176 (406)
T ss_pred EEEEEEeeeccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec---------
Confidence 45555554 56679999999999999999999998888752 33333221 1666666555
Q ss_pred ccccCCceeEEeeecchhhHHHHhhhccccccCC---cccccccccccCCCCCCCCceEEEEEeeccee-EeeeecccCC
Q 000722 80 EAMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAP---TAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGR 155 (1331)
Q Consensus 80 ~~l~gg~V~sVaf~DgtIrvWdl~tg~~l~~~~~---~~~~~~~~~V~svafspdg~~lLasgs~d~iI-vwDl~t~~~~ 155 (1331)
+...||++|+....+-..... .......+.+.+++|+|-....+++|+....+ ++.... ..
T Consensus 177 -------------ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~--~~ 241 (406)
T KOG2919|consen 177 -------------YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDG--RR 241 (406)
T ss_pred -------------ccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCC--CC
Confidence 366788888743322111111 11122256788999999887799999988877 554333 23
Q ss_pred CCCccccccccceeeehhhcccCCCcceEeecC-CCceeeeeehhh-heeehhhcCCCccchhhhhHhhhccccEEEeec
Q 000722 156 DIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGS-SDGVIRVLSMIS-WKLVRRYTGGHKGSISCLMTFMASSGEALLVSG 233 (1331)
Q Consensus 156 ~i~~~~~h~~~V~~Vaf~P~s~Spdg~~LasGs-~DGtIrlWDl~t-~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSg 233 (1331)
.+..+.+|.+.|+.+.| .++|+.|.+|+ .|-.|.+||++. +.++..+. .|...-+.--.|...|++++|++|
T Consensus 242 pl~llggh~gGvThL~~-----~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~-rhv~~TNQRI~FDld~~~~~LasG 315 (406)
T KOG2919|consen 242 PLQLLGGHGGGVTHLQW-----CEDGNKLFSGARKDDKILCWDIRYSRDPVYALE-RHVGDTNQRILFDLDPKGEILASG 315 (406)
T ss_pred ceeeecccCCCeeeEEe-----ccCcCeecccccCCCeEEEEeehhccchhhhhh-hhccCccceEEEecCCCCceeecc
Confidence 45567899999999999 67999999998 477899999986 45555654 666533332235567999999999
Q ss_pred CCCceEEEEeccC-CCccccccccceeeeccCcEEEEEechhccCCCcEEEeecCce
Q 000722 234 GSDGLLILWSADH-GQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKT 289 (1331)
Q Consensus 234 s~DgtIrVWDl~t-g~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~ 289 (1331)
+.||.|++||+.. +.. ...+..|+..|+.++++| --+++++++..+.
T Consensus 316 ~tdG~V~vwdlk~~gn~------~sv~~~~sd~vNgvslnP---~mpilatssGqr~ 363 (406)
T KOG2919|consen 316 DTDGSVRVWDLKDLGNE------VSVTGNYSDTVNGVSLNP---IMPILATSSGQRI 363 (406)
T ss_pred CCCccEEEEecCCCCCc------ccccccccccccceecCc---ccceeeeccCcee
Confidence 9999999999987 442 234577899999999999 6778888775543
No 183
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.35 E-value=4e-12 Score=146.91 Aligned_cols=183 Identities=19% Similarity=0.286 Sum_probs=139.2
Q ss_pred ccccccccceeeehhhcccCCCcceEeecCCCceeeeeehhhheeehhhcCCCccchhhhhHhhhccccEEEeecCCCce
Q 000722 159 KQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGL 238 (1331)
Q Consensus 159 ~~~~h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~Dgt 238 (1331)
.+.+|.+.|+|++| +.+|.+|++||+|-.+.|||.-..+++..+..||...|.|+. |....+..+++||+.|..
T Consensus 45 eL~GH~GCVN~LeW-----n~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvK-FvP~tnnriv~sgAgDk~ 118 (758)
T KOG1310|consen 45 ELTGHTGCVNCLEW-----NADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVK-FVPYTNNRIVLSGAGDKL 118 (758)
T ss_pred hhccccceecceee-----cCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEe-eeccCCCeEEEeccCcce
Confidence 47899999999999 789999999999999999999988999888889999999998 323445678999999999
Q ss_pred EEEEeccCCCc----cccccccceeeeccCcEEEEEechhccCCCcEEEeecCceeEeeeccchhhhcccCCCCcccccc
Q 000722 239 LILWSADHGQD----SRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHS 314 (1331)
Q Consensus 239 IrVWDl~tg~~----~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~ 314 (1331)
|+++|+...+. -....+...+..|...|..++-.| +....+.+++.||+|+-+|++....- .
T Consensus 119 i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p--~~PhtfwsasEDGtirQyDiREph~c----------~-- 184 (758)
T KOG1310|consen 119 IKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAP--NGPHTFWSASEDGTIRQYDIREPHVC----------N-- 184 (758)
T ss_pred EEEEecccccccccccCccchhhhhhhhhhhhhheecCC--CCCceEEEecCCcceeeecccCCccC----------C--
Confidence 99999985221 111224455678999999999998 24478999999999999998853210 0
Q ss_pred cccccCCCCCCCceeeeeecceeeeeecCccccccccccccccCCCccccccccceEEEEEEeccCCccEeeecceeEEE
Q 000722 315 VASWCHPRAPNLDILTCVKDSHIWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVI 394 (1331)
Q Consensus 315 ~~V~svafspdg~lLa~s~Dg~IWdl~~~~~~~l~~~~~~~~~~~~~~~l~~h~~~~I~~la~sp~~~~lLAtGs~DG~I 394 (1331)
|++... -++. .+.+.-- ...|++.+|.++++|++|+.|-..
T Consensus 185 ---------p~~~~~--------~~l~---------------------ny~~~li-elk~ltisp~rp~~laVGgsdpfa 225 (758)
T KOG1310|consen 185 ---------PDEDCP--------SILV---------------------NYNPQLI-ELKCLTISPSRPYYLAVGGSDPFA 225 (758)
T ss_pred ---------cccccc--------HHHH---------------------Hhchhhh-eeeeeeecCCCCceEEecCCCchh
Confidence 111000 0000 0000111 578999999999999999999998
Q ss_pred EeecCCC
Q 000722 395 ISEFDPR 401 (1331)
Q Consensus 395 l~VWDlr 401 (1331)
++||.|
T Consensus 226 -rLYD~R 231 (758)
T KOG1310|consen 226 -RLYDRR 231 (758)
T ss_pred -hhhhhh
Confidence 999964
No 184
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.35 E-value=1.7e-11 Score=138.40 Aligned_cols=162 Identities=19% Similarity=0.194 Sum_probs=130.0
Q ss_pred cccccCCCCCCCCceEEEEEeeccee-Eeeeeccc-------CCCCCccccccccceeeehhhcccCCCcceEeecCCCc
Q 000722 120 TSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMR-------GRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDG 191 (1331)
Q Consensus 120 ~~~V~svafspdg~~lLasgs~d~iI-vwDl~t~~-------~~~i~~~~~h~~~V~~Vaf~P~s~Spdg~~LasGs~DG 191 (1331)
..++.++.|.++....+++|+.|.-+ +|-++... ......+..|...|+++.| +|+|.++++|+++|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf-----~p~gelLASg~D~g 87 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRF-----SPDGELLASGGDGG 87 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEE-----cCCcCeeeecCCCc
Confidence 45677888888776678888777655 78655432 2234456788999999999 78999999999999
Q ss_pred eeeeeehh--------h--------heeehhhcCCCccchhhhhHhhhccccEEEeecCCCceEEEEeccCCCccccccc
Q 000722 192 VIRVLSMI--------S--------WKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVP 255 (1331)
Q Consensus 192 tIrlWDl~--------t--------~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrVWDl~tg~~~~~~~~ 255 (1331)
.|.+|-.. + +...+.+. +|...|..++| +++++++++++.|.++++||+..|+....
T Consensus 88 ~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr-~h~~diydL~W---s~d~~~l~s~s~dns~~l~Dv~~G~l~~~--- 160 (434)
T KOG1009|consen 88 EVFLWKQGDVRIFDADTEADLNKEKWVVKKVLR-GHRDDIYDLAW---SPDSNFLVSGSVDNSVRLWDVHAGQLLAI--- 160 (434)
T ss_pred eEEEEEecCcCCccccchhhhCccceEEEEEec-ccccchhhhhc---cCCCceeeeeeccceEEEEEeccceeEee---
Confidence 99999765 2 22333444 89999999996 78999999999999999999999986554
Q ss_pred cceeeeccCcEEEEEechhccCCCcEEEeecCceeEeeeccchh
Q 000722 256 KLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFK 299 (1331)
Q Consensus 256 ~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~ 299 (1331)
+.+|...|..++|.| -.+++++-+.|+..+.+.+...+
T Consensus 161 ---~~dh~~yvqgvawDp---l~qyv~s~s~dr~~~~~~~~~~~ 198 (434)
T KOG1009|consen 161 ---LDDHEHYVQGVAWDP---LNQYVASKSSDRHPEGFSAKLKQ 198 (434)
T ss_pred ---ccccccccceeecch---hhhhhhhhccCcccceeeeeeee
Confidence 688999999999999 78899999999988887766443
No 185
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.34 E-value=9.2e-12 Score=135.13 Aligned_cols=202 Identities=13% Similarity=0.124 Sum_probs=142.0
Q ss_pred cccccCCCCCCCCceEEEEEeeccee-EeeeecccCC-CCCccccccccceeeehhhcccCCCcceEeecCCCceeeeee
Q 000722 120 TSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGR-DIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLS 197 (1331)
Q Consensus 120 ~~~V~svafspdg~~lLasgs~d~iI-vwDl~t~~~~-~i~~~~~h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWD 197 (1331)
..+++++.|+.-..+++.+++-|... +||++++... ....+..|.++|..|+|.. ..-+.+++.+.||+||+||
T Consensus 150 ~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~----~s~~~FASvgaDGSvRmFD 225 (364)
T KOG0290|consen 150 CAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLK----GSRDVFASVGADGSVRMFD 225 (364)
T ss_pred CCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEecc----CccceEEEecCCCcEEEEE
Confidence 55788888988777899999989877 9999986321 2234678999999999942 1246899999999999999
Q ss_pred hhhheeehhhc-CCC-ccchhhhhHhhhccccEEEeecCCC-ceEEEEeccCCCccccccccceeeeccCcEEEEEechh
Q 000722 198 MISWKLVRRYT-GGH-KGSISCLMTFMASSGEALLVSGGSD-GLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRV 274 (1331)
Q Consensus 198 l~t~~~v~~~~-~gH-~~~V~~vawf~~spdg~lLaSgs~D-gtIrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~ 274 (1331)
++..+.-..+. ... ..+...++| ...|.+++++-..| ..|.+.|++... .+...+++|...|+.++|.|
T Consensus 226 LR~leHSTIIYE~p~~~~pLlRLsw--nkqDpnymATf~~dS~~V~iLDiR~P~-----tpva~L~~H~a~VNgIaWaP- 297 (364)
T KOG0290|consen 226 LRSLEHSTIIYEDPSPSTPLLRLSW--NKQDPNYMATFAMDSNKVVILDIRVPC-----TPVARLRNHQASVNGIAWAP- 297 (364)
T ss_pred ecccccceEEecCCCCCCcceeecc--CcCCchHHhhhhcCCceEEEEEecCCC-----cceehhhcCcccccceEecC-
Confidence 98654332221 122 456666776 45566777776554 568899998764 35667899999999999999
Q ss_pred ccCCCcEEEeecCceeEeeeccchhhhcccCCCCcccccccccccCCCCCC-Cceeeeeecc
Q 000722 275 MGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPN-LDILTCVKDS 335 (1331)
Q Consensus 275 ~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspd-g~lLa~s~Dg 335 (1331)
.....|+|+|+|..+.+||+...-.-....+.... .-...|..+.|++. +..++...+.
T Consensus 298 -hS~~hictaGDD~qaliWDl~q~~~~~~~dPilay-~a~~EVNqi~Ws~~~~Dwiai~~~k 357 (364)
T KOG0290|consen 298 -HSSSHICTAGDDCQALIWDLQQMPRENGEDPILAY-TAGGEVNQIQWSSSQPDWIAICFGK 357 (364)
T ss_pred -CCCceeeecCCcceEEEEecccccccCCCCchhhh-hccceeeeeeecccCCCEEEEEecC
Confidence 47889999999999999999753221111111111 13456777888754 4466544433
No 186
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.34 E-value=4e-12 Score=140.84 Aligned_cols=262 Identities=14% Similarity=0.132 Sum_probs=168.5
Q ss_pred ccccccCCCcEEEEEeecC--CceeEeecCCCceeeeccccceEEeeeccCCcccchhhhhhhhhhcccccccCCCCccc
Q 000722 4 LKAFRPTNDKIVKIQLHPT--HPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEA 81 (1331)
Q Consensus 4 l~~L~gHs~~V~~lafSPd--g~~LaSgs~DGtV~VWD~~tg~~i~s~~~~~~~~i~~vspdg~~Lasgs~d~~g~~l~~ 81 (1331)
++.|++|...+..+.|..+ ...+.+|+.||+|++||+++...+..+......
T Consensus 63 l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~-------------------------- 116 (376)
T KOG1188|consen 63 LEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQS-------------------------- 116 (376)
T ss_pred hheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCC--------------------------
Confidence 6778999999999999884 458889999999999999986655555422100
Q ss_pred ccCCceeEEeeecchhhHHHHhhhccccccCCcccccccccccCCCCCCCCceEEEEEe-----ecceeEeeeecccCCC
Q 000722 82 MRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICC-----VNKAIFLDLVTMRGRD 156 (1331)
Q Consensus 82 l~gg~V~sVaf~DgtIrvWdl~tg~~l~~~~~~~~~~~~~~V~svafspdg~~lLasgs-----~d~iIvwDl~t~~~~~ 156 (1331)
..+..+++..-.+. ++++|. +-.+++||++..+...
T Consensus 117 --------------------------------------~~~f~~ld~nck~~-ii~~GtE~~~s~A~v~lwDvR~~qq~l 157 (376)
T KOG1188|consen 117 --------------------------------------GTPFICLDLNCKKN-IIACGTELTRSDASVVLWDVRSEQQLL 157 (376)
T ss_pred --------------------------------------CCcceEeeccCcCC-eEEeccccccCceEEEEEEeccccchh
Confidence 11122222222333 555553 2235589998754322
Q ss_pred CCccccccccceeeehhhcccCCCcceEeecCCCceeeeeehhhh----eeehhhcCCCccchhhhhHhhhccccEEEee
Q 000722 157 IPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISW----KLVRRYTGGHKGSISCLMTFMASSGEALLVS 232 (1331)
Q Consensus 157 i~~~~~h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~----~~v~~~~~gH~~~V~~vawf~~spdg~lLaS 232 (1331)
-.....|.+.|+++.|||. +.++|++||.||.|.|||+... .++..+ .|...|.++.| .++.-+.|.+
T Consensus 158 ~~~~eSH~DDVT~lrFHP~----~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~vi--N~~sSI~~igw--~~~~ykrI~c 229 (376)
T KOG1188|consen 158 RQLNESHNDDVTQLRFHPS----DPNLLLSGSVDGLVNLFDTKKDNEEDALLHVI--NHGSSIHLIGW--LSKKYKRIMC 229 (376)
T ss_pred hhhhhhccCcceeEEecCC----CCCeEEeecccceEEeeecCCCcchhhHHHhh--cccceeeeeee--ecCCcceEEE
Confidence 3345789999999999874 6789999999999999999743 233444 58888999986 4555456778
Q ss_pred cCCCceEEEEeccCCCcccccccc-ceee-----eccCcEEEEEechhccCCCcEEEeec-CceeEeeeccchhhhcccC
Q 000722 233 GGSDGLLILWSADHGQDSRELVPK-LSLK-----AHDGGVVAVELSRVMGGSPQLITIGA-DKTLAIWDTVSFKELRRIK 305 (1331)
Q Consensus 233 gs~DgtIrVWDl~tg~~~~~~~~~-~~l~-----gH~~~V~svafsp~~~dg~~LaSgs~-Dg~IrIWDl~t~~~l~~~~ 305 (1331)
-+.+.+..+|+++.+.+...+... .... .....+... .+| ++...++.++. -+...++-+..........
T Consensus 230 lTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~-~~~--~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~ 306 (376)
T KOG1188|consen 230 LTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINE-HSP--GDKDTCALAGTDSNKGTIFPLVDTSSGSLLT 306 (376)
T ss_pred EEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeec-ccC--CCcceEEEeccccCceeEEEeeecccccccC
Confidence 889999999999988753321110 0000 000111111 223 35556665554 6667766655333222333
Q ss_pred CCCcccc-cccccccCCCCCCCc-eeeeeecce--eeeee
Q 000722 306 PVPKLAC-HSVASWCHPRAPNLD-ILTCVKDSH--IWAIE 341 (1331)
Q Consensus 306 ~~~~l~~-H~~~V~svafspdg~-lLa~s~Dg~--IWdl~ 341 (1331)
+...+.+ |..-|+++.|.-.+. +++||+||. +|...
T Consensus 307 ~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~~ 346 (376)
T KOG1188|consen 307 EPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKVE 346 (376)
T ss_pred ccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEecC
Confidence 3444555 667788888887666 459999996 68753
No 187
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.33 E-value=1e-12 Score=153.29 Aligned_cols=257 Identities=15% Similarity=0.199 Sum_probs=169.9
Q ss_pred ccccCCCcEEEEEeecCCceeEeecCCCceeeecccc--------ceEEeeeccCCcccchhhh--hhhhhhcccccccC
Q 000722 6 AFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEH--------RQVIYELKAGGVDQRRLVG--AKLEKLAEGELEHK 75 (1331)
Q Consensus 6 ~L~gHs~~V~~lafSPdg~~LaSgs~DGtV~VWD~~t--------g~~i~s~~~~~~~~i~~vs--pdg~~Lasgs~d~~ 75 (1331)
+++.|.+.|+.++|+|..+.|++|+.||++++|+++. -+.+.+|..| ...|.++. ..++.+.+++
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH-~gPVl~v~v~~n~~~~ysgg---- 363 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAH-EGPVLCVVVPSNGEHCYSGG---- 363 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecc-cCceEEEEecCCceEEEeec----
Confidence 6788999999999999999999999999999999932 1346666633 23333322 2333333222
Q ss_pred CCCcccccCCceeEEeeecchhhHHHHhhhcc------ccccCCcccccccccccCCCCCCCCceEEEEEeeccee-Eee
Q 000722 76 GKPTEAMRGGSVKQVNFYDDDVRFWQLWRNRA------AAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLD 148 (1331)
Q Consensus 76 g~~l~~l~gg~V~sVaf~DgtIrvWdl~tg~~------l~~~~~~~~~~~~~~V~svafspdg~~lLasgs~d~iI-vwD 148 (1331)
.||+||.|++....- .......+.|| .+.||.+++|+... .|++|+.|+.+ .|+
T Consensus 364 -----------------~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Gh-tdavw~l~~s~~~~-~Llscs~DgTvr~w~ 424 (577)
T KOG0642|consen 364 -----------------IDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGH-TDAVWLLALSSTKD-RLLSCSSDGTVRLWE 424 (577)
T ss_pred -----------------cCceeeeeccCCCCCcccccCcchhccceecc-ccceeeeeeccccc-ceeeecCCceEEeec
Confidence 599999996542211 11223445566 88899999999877 67777777776 786
Q ss_pred eecccCCCCCccccccccceeeehhhcccCCCcceEeecCCCceeeeeehhhheeehhhcCCC------ccchhhhhHhh
Q 000722 149 LVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGH------KGSISCLMTFM 222 (1331)
Q Consensus 149 l~t~~~~~i~~~~~h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~~~v~~~~~gH------~~~V~~vawf~ 222 (1331)
...... +........+...+++|. +.+-...++...-+.-.++++.....+..+...- ...++-+.
T Consensus 425 ~~~~~~-~~f~~~~e~g~Plsvd~~----ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vV--- 496 (577)
T KOG0642|consen 425 PTEESP-CTFGEPKEHGYPLSVDRT----SSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVV--- 496 (577)
T ss_pred cCCcCc-cccCCccccCCcceEeec----cchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEE---
Confidence 654332 222223335566777772 1111122222223333344444443333332110 12233333
Q ss_pred hccccEEEeecCCCceEEEEeccCCCccccccccceeeeccCcEEEEEechhccCCCcEEEeecCceeEeeeccchhhhc
Q 000722 223 ASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELR 302 (1331)
Q Consensus 223 ~spdg~lLaSgs~DgtIrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~ 302 (1331)
.+|+..+.+++..|+.|+++|..+++.+.. ...|...|+++++.| ++.+|++++.||.+++|.+....++.
T Consensus 497 s~~~~~~~~~~hed~~Ir~~dn~~~~~l~s------~~a~~~svtslai~~---ng~~l~s~s~d~sv~l~kld~k~~~~ 567 (577)
T KOG0642|consen 497 SHPTADITFTAHEDRSIRFFDNKTGKILHS------MVAHKDSVTSLAIDP---NGPYLMSGSHDGSVRLWKLDVKTCVL 567 (577)
T ss_pred ecCCCCeeEecccCCceecccccccccchh------eeeccceecceeecC---CCceEEeecCCceeehhhccchheee
Confidence 467888999999999999999999986554 678999999999999 89999999999999999998777765
Q ss_pred c
Q 000722 303 R 303 (1331)
Q Consensus 303 ~ 303 (1331)
.
T Consensus 568 e 568 (577)
T KOG0642|consen 568 E 568 (577)
T ss_pred c
Confidence 5
No 188
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.31 E-value=4.5e-12 Score=139.14 Aligned_cols=350 Identities=13% Similarity=0.121 Sum_probs=207.1
Q ss_pred CCCCCCCceEEEEEeecceeEeeeecccCCCCCccccccccceeeehhhcccCCCcceEeec-CCCceeeeeehhhheee
Q 000722 126 PPPSTKGRHFLVICCVNKAIFLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFG-SSDGVIRVLSMISWKLV 204 (1331)
Q Consensus 126 vafspdg~~lLasgs~d~iIvwDl~t~~~~~i~~~~~h~~~V~~Vaf~P~s~Spdg~~LasG-s~DGtIrlWDl~t~~~v 204 (1331)
++|+|+|+ +++++++.++++=|.++.+...+ + .--+.|.-+.| ..|..+++++ ..|+.|.+|++...+..
T Consensus 14 c~fSp~g~-yiAs~~~yrlviRd~~tlq~~ql--f-~cldki~yieW-----~ads~~ilC~~yk~~~vqvwsl~Qpew~ 84 (447)
T KOG4497|consen 14 CSFSPCGN-YIASLSRYRLVIRDSETLQLHQL--F-LCLDKIVYIEW-----KADSCHILCVAYKDPKVQVWSLVQPEWY 84 (447)
T ss_pred eeECCCCC-eeeeeeeeEEEEeccchhhHHHH--H-HHHHHhhheee-----eccceeeeeeeeccceEEEEEeecceeE
Confidence 56899998 99999988777667776442211 1 11456777888 5677666655 57889999999988777
Q ss_pred hhhcCCCccchhhhhHhhhcccc-EEEeecCCCceEEEEeccCCCccccccccceeeeccCcEEEEEechhccCCCcEEE
Q 000722 205 RRYTGGHKGSISCLMTFMASSGE-ALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLIT 283 (1331)
Q Consensus 205 ~~~~~gH~~~V~~vawf~~spdg-~lLaSgs~DgtIrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaS 283 (1331)
..+. ....++.+++| +|+| .+|.+...|-.|.||.+.+.+... +.-....+..++|+| ++++.+.
T Consensus 85 ckId-eg~agls~~~W---SPdgrhiL~tseF~lriTVWSL~t~~~~~-------~~~pK~~~kg~~f~~---dg~f~ai 150 (447)
T KOG4497|consen 85 CKID-EGQAGLSSISW---SPDGRHILLTSEFDLRITVWSLNTQKGYL-------LPHPKTNVKGYAFHP---DGQFCAI 150 (447)
T ss_pred EEec-cCCCcceeeeE---CCCcceEeeeecceeEEEEEEeccceeEE-------ecccccCceeEEECC---CCceeee
Confidence 7776 55667777774 8999 556677789999999999876432 232344578899999 8998888
Q ss_pred eecCce---eEeeeccchhhhcccCCCCcccccccccccCCCCCCCceeeeeecceeeeeecCccccccccccccccCCC
Q 000722 284 IGADKT---LAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDILTCVKDSHIWAIEHPTYSALTRPLCELSSLVP 360 (1331)
Q Consensus 284 gs~Dg~---IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg~lLa~s~Dg~IWdl~~~~~~~l~~~~~~~~~~~~ 360 (1331)
.+.-.. +.|........++. +...+...+.+.|+|||..|+. ||.--.
T Consensus 151 ~sRrDCkdyv~i~~c~~W~ll~~------f~~dT~DltgieWsPdg~~laV------wd~~Le----------------- 201 (447)
T KOG4497|consen 151 LSRRDCKDYVQISSCKAWILLKE------FKLDTIDLTGIEWSPDGNWLAV------WDNVLE----------------- 201 (447)
T ss_pred eecccHHHHHHHHhhHHHHHHHh------cCCCcccccCceECCCCcEEEE------ecchhh-----------------
Confidence 775322 22222233333433 3344455678999999988876 664311
Q ss_pred ccccccccceEEEEEEeccCCccEeeecceeEEEEeecCCCCCCCCCCCCCCCCCCCcc--eEEEeeee-eeeeeeeccc
Q 000722 361 PQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPRSLPAVAPLPTPSGSRDHS--AVYIVERE-LKLVNFQLSS 437 (1331)
Q Consensus 361 ~~~l~~h~~~~I~~la~sp~~~~lLAtGs~DG~Il~VWDlr~~p~i~~~~t~s~~~~~s--~~~~~~~~-l~l~~fq~~~ 437 (1331)
...+..+.+..+..+.|+| .+.+++.|+.|+.+ ||.+--+-.++..+..+..-.+.. ++|..... +++.--.++
T Consensus 202 ykv~aYe~~lG~k~v~wsP-~~qflavGsyD~~l-rvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLs- 278 (447)
T KOG4497|consen 202 YKVYAYERGLGLKFVEWSP-CNQFLAVGSYDQML-RVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLS- 278 (447)
T ss_pred heeeeeeeccceeEEEecc-ccceEEeeccchhh-hhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccc-
Confidence 1122334444788999999 68889999999997 787655444444443332222211 11111111 110000000
Q ss_pred CCCCCCCCCCCccccCCCCCCCCchhhHhhhcc--cccccc--CCCceeEEEEeeCCcEEEEEcC-CCceeeEEeeccee
Q 000722 438 AANPSLGNNGSLSETGRLKGDLPDALQIKQIKK--HISTPV--PHDSYSILSVSSSGKYLAVVWP-DIPYFSVYKVSDWS 512 (1331)
Q Consensus 438 ~~~~~lg~~~~ls~~G~~~~~~~e~l~v~~~~r--~i~t~~--~~e~~s~ls~SpdGrylaVv~~-~~g~y~Iy~i~~~~ 512 (1331)
-.+..++....-..+.+ .|.....+... ...+.. +.-+...+++|+|..|++...+ =-..+.||++.+.+
T Consensus 279 f~p~~~~a~~~~~se~~-----YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~ 353 (447)
T KOG4497|consen 279 FTPTDLEAHIWEESETI-----YEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLK 353 (447)
T ss_pred cCCCccccCccccchhh-----hhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhh
Confidence 00101111010000000 00000000000 011222 2233458999999999955432 12456788887765
Q ss_pred E----eecCcceeeehhcchhhHHHhh
Q 000722 513 I----VDSGSARLLAWDTCRDRFAILE 535 (1331)
Q Consensus 513 ~----i~~G~~~~~aWs~~~~~fAvl~ 535 (1331)
. +..-..+.+.|+|.+.|+++..
T Consensus 354 l~avLiQk~piraf~WdP~~prL~vct 380 (447)
T KOG4497|consen 354 LHAVLIQKHPIRAFEWDPGRPRLVVCT 380 (447)
T ss_pred hhhhhhhccceeEEEeCCCCceEEEEc
Confidence 4 3366689999999999999984
No 189
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.31 E-value=6.6e-11 Score=138.10 Aligned_cols=236 Identities=25% Similarity=0.371 Sum_probs=162.2
Q ss_pred cccCCCCCCCCceEEEEEee-ccee-EeeeecccCCCCCccccccccceeeehhhcccCCCcc-eEeecCCCceeeeeeh
Q 000722 122 GFASPPPSTKGRHFLVICCV-NKAI-FLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVP-LVAFGSSDGVIRVLSM 198 (1331)
Q Consensus 122 ~V~svafspdg~~lLasgs~-d~iI-vwDl~t~~~~~i~~~~~h~~~V~~Vaf~P~s~Spdg~-~LasGs~DGtIrlWDl 198 (1331)
.|..+.|+|++. .++.++. ++.+ +|+..... .+.....|...|.+++| +|++. .+++++.|+.|++||.
T Consensus 157 ~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~-----~~~~~~~~~~~~~d~~i~~wd~ 228 (466)
T COG2319 157 SVTSLAFSPDGK-LLASGSSLDGTIKLWDLRTGK--PLSTLAGHTDPVSSLAF-----SPDGGLLIASGSSDGTIRLWDL 228 (466)
T ss_pred cEEEEEECCCCC-EEEecCCCCCceEEEEcCCCc--eEEeeccCCCceEEEEE-----cCCcceEEEEecCCCcEEEEEC
Confidence 345677899998 6666663 5555 88887632 34456668999999999 56777 5566599999999998
Q ss_pred hhheeeh-hhcCCCccchhhhhHhhhccccEEEeecCCCceEEEEeccCCCccccccccceeeeccCcEEEEEechhccC
Q 000722 199 ISWKLVR-RYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGG 277 (1331)
Q Consensus 199 ~t~~~v~-~~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~d 277 (1331)
..+..+. .+. +|...+ ... +++++..+++++.|+.+++|+....... ...+.+|...|.++.|+| +
T Consensus 229 ~~~~~~~~~~~-~~~~~~-~~~---~~~~~~~~~~~~~d~~~~~~~~~~~~~~-----~~~~~~~~~~v~~~~~~~---~ 295 (466)
T COG2319 229 STGKLLRSTLS-GHSDSV-VSS---FSPDGSLLASGSSDGTIRLWDLRSSSSL-----LRTLSGHSSSVLSVAFSP---D 295 (466)
T ss_pred CCCcEEeeecC-CCCcce-eEe---ECCCCCEEEEecCCCcEEEeeecCCCcE-----EEEEecCCccEEEEEECC---C
Confidence 8777776 454 777764 223 6888888889999999999999876541 112267889999999998 6
Q ss_pred CCcEEEeecCceeEeeeccchhhhcccCCCCcccccccccccCCCCCCCc-eeee-eecce--eeeeecCcccccccccc
Q 000722 278 SPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLD-ILTC-VKDSH--IWAIEHPTYSALTRPLC 353 (1331)
Q Consensus 278 g~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg~-lLa~-s~Dg~--IWdl~~~~~~~l~~~~~ 353 (1331)
+..+++++.|+.+++||..+........ ...|...+..+.|.+++. +..+ ..|+. +|++....
T Consensus 296 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--------- 362 (466)
T COG2319 296 GKLLASGSSDGTVRLWDLETGKLLSSLT----LKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK--------- 362 (466)
T ss_pred CCEEEEeeCCCcEEEEEcCCCceEEEee----ecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc---------
Confidence 7788889999999999888776544422 235666677777733323 3344 45554 57766431
Q ss_pred ccccCCCccccccccceEEEEEEeccCCccEeee-cceeEEEEeecCCCC
Q 000722 354 ELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVAT-GTNVGVIISEFDPRS 402 (1331)
Q Consensus 354 ~~~~~~~~~~l~~h~~~~I~~la~sp~~~~lLAt-Gs~DG~Il~VWDlr~ 402 (1331)
...... ... .+..+.+++ + ..+.. +..++.+ .+|+...
T Consensus 363 ------~~~~~~-~~~-~~~~~~~~~-~-~~~~~~~~~~~~~-~~~~~~~ 401 (466)
T COG2319 363 ------PLKTLE-GHS-NVLSVSFSP-D-GRVVSSGSTDGTV-RLWDLST 401 (466)
T ss_pred ------eeEEec-CCc-eEEEEEECC-C-CCEEEEecCCCce-EEEeccc
Confidence 000111 111 278888888 6 54444 7778887 7998763
No 190
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.31 E-value=5.5e-12 Score=147.39 Aligned_cols=130 Identities=21% Similarity=0.402 Sum_probs=104.6
Q ss_pred ccccccccceeeehhhcccCCCcceEeecCCCceeeeeehhh--------heeehhhcCCCccchhhhhHhhhccccEEE
Q 000722 159 KQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMIS--------WKLVRRYTGGHKGSISCLMTFMASSGEALL 230 (1331)
Q Consensus 159 ~~~~h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t--------~~~v~~~~~gH~~~V~~vawf~~spdg~lL 230 (1331)
++..|.+.|+.+.| ++....|++++.||+|++|+++. -+.+.+|. +|.++|.|++ .++++..+
T Consensus 289 tl~s~~d~ir~l~~-----~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfr-aH~gPVl~v~---v~~n~~~~ 359 (577)
T KOG0642|consen 289 TLRSHDDCIRALAF-----HPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFR-AHEGPVLCVV---VPSNGEHC 359 (577)
T ss_pred eeecchhhhhhhhc-----CCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEe-cccCceEEEE---ecCCceEE
Confidence 34567788999999 45678999999999999999942 25667777 9999999998 89999999
Q ss_pred eecCCCceEEEEeccCCCccc-cc---cccceeeeccCcEEEEEechhccCCCcEEEeecCceeEeeeccchhh
Q 000722 231 VSGGSDGLLILWSADHGQDSR-EL---VPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKE 300 (1331)
Q Consensus 231 aSgs~DgtIrVWDl~tg~~~~-~~---~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~ 300 (1331)
.+|+.||+|+.|++.....-. .. .....+.||.+.|+.+++|+ ....|++++.||++|+|+......
T Consensus 360 ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~---~~~~Llscs~DgTvr~w~~~~~~~ 430 (577)
T KOG0642|consen 360 YSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSS---TKDRLLSCSSDGTVRLWEPTEESP 430 (577)
T ss_pred EeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecc---cccceeeecCCceEEeeccCCcCc
Confidence 999999999999765221100 00 12345789999999999998 677899999999999999876554
No 191
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.31 E-value=1.7e-11 Score=130.14 Aligned_cols=198 Identities=17% Similarity=0.213 Sum_probs=135.8
Q ss_pred ccCCCCCCCCceEEEEEeeccee-Eeeeeccc--------CCCCCccccccccceeeehhhcccCCCcceEeecCCCcee
Q 000722 123 FASPPPSTKGRHFLVICCVNKAI-FLDLVTMR--------GRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVI 193 (1331)
Q Consensus 123 V~svafspdg~~lLasgs~d~iI-vwDl~t~~--------~~~i~~~~~h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtI 193 (1331)
|.+-+++|.++ +|++|..++.+ ++.+++.. ...+.....|.++|+.++|+ ..+|++|++ |.|
T Consensus 13 vf~qa~sp~~~-~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~-------d~~Lls~gd-G~V 83 (325)
T KOG0649|consen 13 VFAQAISPSKQ-YLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH-------DDFLLSGGD-GLV 83 (325)
T ss_pred HHHHhhCCcce-EEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee-------hhheeeccC-ceE
Confidence 44567899887 78888888777 55554311 11233447899999999993 567777765 999
Q ss_pred eeeehhhhee-------ehhhcCCCc-----cchhhhhHhhhccccEEEeecCCCceEEEEeccCCCccccccccceeee
Q 000722 194 RVLSMISWKL-------VRRYTGGHK-----GSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKA 261 (1331)
Q Consensus 194 rlWDl~t~~~-------v~~~~~gH~-----~~V~~vawf~~spdg~lLaSgs~DgtIrVWDl~tg~~~~~~~~~~~l~g 261 (1331)
+-|.++.... ......-|. -.|+++ | ..|..+-++.++.|+.++.||+++|+..+ +++|
T Consensus 84 ~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam-~--ldP~enSi~~AgGD~~~y~~dlE~G~i~r------~~rG 154 (325)
T KOG0649|consen 84 YGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAM-W--LDPSENSILFAGGDGVIYQVDLEDGRIQR------EYRG 154 (325)
T ss_pred EEeeehhhhhhccchhhhhhcCccccCcccCCcccee-E--eccCCCcEEEecCCeEEEEEEecCCEEEE------EEcC
Confidence 9999864321 111111232 345666 3 56666666667799999999999998554 4799
Q ss_pred ccCcEEEEEechhccCCCcEEEeecCceeEeeeccchhhhcccCCCCc---ccccc-cccccCCCCCCCceeeeeecc--
Q 000722 262 HDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPK---LACHS-VASWCHPRAPNLDILTCVKDS-- 335 (1331)
Q Consensus 262 H~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~---l~~H~-~~V~svafspdg~lLa~s~Dg-- 335 (1331)
|++.|.++.--. ....+++|+.||++|+||++++++++.+.+... ++.|- ..|-+++. +...+.||...
T Consensus 155 HtDYvH~vv~R~---~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGgGp~l 229 (325)
T KOG0649|consen 155 HTDYVHSVVGRN---ANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGGGPKL 229 (325)
T ss_pred Ccceeeeeeecc---cCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecCCCce
Confidence 999999998754 567899999999999999999999988766543 22222 23444444 34466555443
Q ss_pred eeeeeecC
Q 000722 336 HIWAIEHP 343 (1331)
Q Consensus 336 ~IWdl~~~ 343 (1331)
.+|.++..
T Consensus 230 slwhLrss 237 (325)
T KOG0649|consen 230 SLWHLRSS 237 (325)
T ss_pred eEEeccCC
Confidence 48999854
No 192
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.30 E-value=7.1e-12 Score=143.16 Aligned_cols=270 Identities=16% Similarity=0.246 Sum_probs=195.6
Q ss_pred EEEEEeecCCceeEeecCCCceeeeccccceEEeeeccCCcccchhhhhhhhhhcccccccCCCCcccccCCceeEEeee
Q 000722 14 IVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRGGSVKQVNFY 93 (1331)
Q Consensus 14 V~~lafSPdg~~LaSgs~DGtV~VWD~~tg~~i~s~~~~~~~~i~~vspdg~~Lasgs~d~~g~~l~~l~gg~V~sVaf~ 93 (1331)
-..+.|+.+|++|+.|+.-|.|-.+|+.++.+..++..-
T Consensus 132 PY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~----------------------------------------- 170 (545)
T KOG1272|consen 132 PYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVM----------------------------------------- 170 (545)
T ss_pred CeeeeecCCccEEEecCCccceeeeecccceeeeeeehh-----------------------------------------
Confidence 456889999999999999999999999999988887622
Q ss_pred cchhhHHHHhhhccccccCCcccccccccccCCCCCCCCceEEEEEeecceeEeeeecccCCCCCccccccccceeeehh
Q 000722 94 DDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFLDLVTMRGRDIPKQELDNKSLVCMEFL 173 (1331)
Q Consensus 94 DgtIrvWdl~tg~~l~~~~~~~~~~~~~~V~svafspdg~~lLasgs~d~iIvwDl~t~~~~~i~~~~~h~~~V~~Vaf~ 173 (1331)
..|.++.|-.+.+ +++++-...+++||-..-+..|+.. ...|..+.|+
T Consensus 171 ---------------------------Etv~Dv~~LHneq-~~AVAQK~y~yvYD~~GtElHClk~----~~~v~rLeFL 218 (545)
T KOG1272|consen 171 ---------------------------ETVRDVTFLHNEQ-FFAVAQKKYVYVYDNNGTELHCLKR----HIRVARLEFL 218 (545)
T ss_pred ---------------------------hhhhhhhhhcchH-HHHhhhhceEEEecCCCcEEeehhh----cCchhhhccc
Confidence 1133445555554 8888888888888766444444322 3578889997
Q ss_pred hcccCCCcceEeecCCCceeeeeehhhheeehhhcCCCccchhhhhHhhhccccEEEeecCCCceEEEEeccCCCccccc
Q 000722 174 SRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSREL 253 (1331)
Q Consensus 174 P~s~Spdg~~LasGs~DGtIrlWDl~t~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrVWDl~tg~~~~~~ 253 (1331)
| .--+|++++..|.++--|+.+|+.+..+. ...+.+..++ .+|-...+-+|...|+|.+|.......
T Consensus 219 P-----yHfLL~~~~~~G~L~Y~DVS~GklVa~~~-t~~G~~~vm~---qNP~NaVih~GhsnGtVSlWSP~skeP---- 285 (545)
T KOG1272|consen 219 P-----YHFLLVAASEAGFLKYQDVSTGKLVASIR-TGAGRTDVMK---QNPYNAVIHLGHSNGTVSLWSPNSKEP---- 285 (545)
T ss_pred c-----hhheeeecccCCceEEEeechhhhhHHHH-ccCCccchhh---cCCccceEEEcCCCceEEecCCCCcch----
Confidence 5 45588999999999999999999999886 5566777666 678888999999999999999887653
Q ss_pred cccceeeeccCcEEEEEechhccCCCcEEEeecCceeEeeeccchhhhcccCCCCcccccccccccCCCCCCCceeeeee
Q 000722 254 VPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDILTCVK 333 (1331)
Q Consensus 254 ~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg~lLa~s~ 333 (1331)
+..+..|.++|.++++++ +|.|++|.|.|+.|+|||++....+.+. .. ......+++|..|.+..+-.
T Consensus 286 --LvKiLcH~g~V~siAv~~---~G~YMaTtG~Dr~~kIWDlR~~~ql~t~------~t-p~~a~~ls~SqkglLA~~~G 353 (545)
T KOG1272|consen 286 --LVKILCHRGPVSSIAVDR---GGRYMATTGLDRKVKIWDLRNFYQLHTY------RT-PHPASNLSLSQKGLLALSYG 353 (545)
T ss_pred --HHHHHhcCCCcceEEECC---CCcEEeecccccceeEeeecccccccee------ec-CCCccccccccccceeeecC
Confidence 444688999999999999 8999999999999999999988766552 11 23445678887774443323
Q ss_pred cc-eeeeeecCccccccccccccccCCCccccccccceEEEEEEeccCCccEeeecceeEE
Q 000722 334 DS-HIWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGV 393 (1331)
Q Consensus 334 Dg-~IWdl~~~~~~~l~~~~~~~~~~~~~~~l~~h~~~~I~~la~sp~~~~lLAtGs~DG~ 393 (1331)
+. +||.=...... ....+ .+...-...|..+.|+| -..+|..|+..|.
T Consensus 354 ~~v~iw~d~~~~s~---------~~~~p--Ym~H~~~~~V~~l~FcP-~EDvLGIGH~~G~ 402 (545)
T KOG1272|consen 354 DHVQIWKDALKGSG---------HGETP--YMNHRCGGPVEDLRFCP-YEDVLGIGHAGGI 402 (545)
T ss_pred CeeeeehhhhcCCC---------CCCcc--hhhhccCcccccceecc-HHHeeeccccCCc
Confidence 33 57842211000 00011 11111122788999999 4666888877775
No 193
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.30 E-value=2.4e-11 Score=140.66 Aligned_cols=174 Identities=11% Similarity=0.181 Sum_probs=116.9
Q ss_pred ccccccCCCcEEEEEeecCCceeEeecCCCceeeeccccceEEeeeccCCcccchhhhhhhhhhcccccccCCCCccccc
Q 000722 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMR 83 (1331)
Q Consensus 4 l~~L~gHs~~V~~lafSPdg~~LaSgs~DGtV~VWD~~tg~~i~s~~~~~~~~i~~vspdg~~Lasgs~d~~g~~l~~l~ 83 (1331)
...|.||++.|.|++|+.+|.+|++|+.|-.+.|||.-..++++.+..+|
T Consensus 43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgH------------------------------ 92 (758)
T KOG1310|consen 43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGH------------------------------ 92 (758)
T ss_pred hhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeeccc------------------------------
Confidence 46789999999999999999999999999999999987555555544332
Q ss_pred CCceeEEeeecchhhHHHHhhhccccccCCcccccccccccCCCCCCCCceEEEEEeecceeEeeeecccCCCCCccccc
Q 000722 84 GGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFLDLVTMRGRDIPKQELD 163 (1331)
Q Consensus 84 gg~V~sVaf~DgtIrvWdl~tg~~l~~~~~~~~~~~~~~V~svafspdg~~lLasgs~d~iIvwDl~t~~~~~i~~~~~h 163 (1331)
T Consensus 93 -------------------------------------------------------------------------------- 92 (758)
T KOG1310|consen 93 -------------------------------------------------------------------------------- 92 (758)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccceeeehhhcccCCCcceEeecCCCceeeeeehhhh----------eeehhhcCCCccchhhhhHhhhcccc-EEEee
Q 000722 164 NKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISW----------KLVRRYTGGHKGSISCLMTFMASSGE-ALLVS 232 (1331)
Q Consensus 164 ~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~----------~~v~~~~~gH~~~V~~vawf~~spdg-~lLaS 232 (1331)
...|.|+.|.| ..+.+.+++|..|..|++||+... .....+. .|...|..++ ..|++ +.|.+
T Consensus 93 taNIFsvKFvP---~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~-cht~rVKria---~~p~~Phtfws 165 (758)
T KOG1310|consen 93 TANIFSVKFVP---YTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWS-CHTDRVKRIA---TAPNGPHTFWS 165 (758)
T ss_pred ccceeEEeeec---cCCCeEEEeccCcceEEEEecccccccccccCccchhhhhh-hhhhhhhhee---cCCCCCceEEE
Confidence 33344445544 233445555555566666655421 1222233 6777777776 45555 78999
Q ss_pred cCCCceEEEEeccCCCcccc-c---cccceeeeccCcEEEEEechhccCCCcEEEeecCceeEeeecc
Q 000722 233 GGSDGLLILWSADHGQDSRE-L---VPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTV 296 (1331)
Q Consensus 233 gs~DgtIrVWDl~tg~~~~~-~---~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~ 296 (1331)
++.||+|+-+|++....-.. . .....+...--...|+..+| .+..+|++|+.|-..++||.+
T Consensus 166 asEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp--~rp~~laVGgsdpfarLYD~R 231 (758)
T KOG1310|consen 166 ASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISP--SRPYYLAVGGSDPFARLYDRR 231 (758)
T ss_pred ecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecC--CCCceEEecCCCchhhhhhhh
Confidence 99999999999987432110 0 00001111112357899999 477899999999999999964
No 194
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.27 E-value=2.7e-11 Score=148.34 Aligned_cols=255 Identities=12% Similarity=0.074 Sum_probs=166.4
Q ss_pred CCcEEEEEeecCCc-eeEeecCCCceeeeccccceE--Eeeec---cCCcccchhhhhhhhhhcccccccCCCCcccccC
Q 000722 11 NDKIVKIQLHPTHP-WLVTADASDHVSVWNWEHRQV--IYELK---AGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRG 84 (1331)
Q Consensus 11 s~~V~~lafSPdg~-~LaSgs~DGtV~VWD~~tg~~--i~s~~---~~~~~~i~~vspdg~~Lasgs~d~~g~~l~~l~g 84 (1331)
...|+|+.|+|..+ +|+.|..+|.|.+||++.+.. ...+. ..|...+..+- . +...+.
T Consensus 242 ~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vv---------W-------~~~~~~ 305 (555)
T KOG1587|consen 242 PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVV---------W-------LQNEHN 305 (555)
T ss_pred CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEE---------E-------eccCCC
Confidence 46799999999766 778888999999999987654 22111 11111111110 0 000001
Q ss_pred CceeEEeeecchhhHHHHhhhcccccc----C---CcccccccccccCCCCCCCCceEEEEEeecceeEe-eeecccC--
Q 000722 85 GSVKQVNFYDDDVRFWQLWRNRAAAAE----A---PTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFL-DLVTMRG-- 154 (1331)
Q Consensus 85 g~V~sVaf~DgtIrvWdl~tg~~l~~~----~---~~~~~~~~~~V~svafspdg~~lLasgs~d~iIvw-Dl~t~~~-- 154 (1331)
..+.++. .||.|+.|++..-...... . ..........++++.|.+..+..|++|++.|.+.- +.+..+.
T Consensus 306 ~~f~s~s-sDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~ 384 (555)
T KOG1587|consen 306 TEFFSLS-SDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAP 384 (555)
T ss_pred CceEEEe-cCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccc
Confidence 1122222 4999999976543321100 0 01112224467889999988888999999987733 3222111
Q ss_pred ----CCCCccccccccceeeehhhcccCCCcceEeecCCCceeeeeehh-hheeehhhcCCCccchhhhhHhhhccccEE
Q 000722 155 ----RDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMI-SWKLVRRYTGGHKGSISCLMTFMASSGEAL 229 (1331)
Q Consensus 155 ----~~i~~~~~h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~-t~~~v~~~~~gH~~~V~~vawf~~spdg~l 229 (1331)
+.......|.+.|+++.++ |-+..++..+.|-+|+||... ...++..+. .+...|++++|. .-....
T Consensus 385 ~~~~~~~~~~~~h~g~v~~v~~n-----PF~~k~fls~gDW~vriWs~~~~~~Pl~~~~-~~~~~v~~vaWS--ptrpav 456 (555)
T KOG1587|consen 385 EVSYKGHSTFITHIGPVYAVSRN-----PFYPKNFLSVGDWTVRIWSEDVIASPLLSLD-SSPDYVTDVAWS--PTRPAV 456 (555)
T ss_pred cccccccccccccCcceEeeecC-----CCccceeeeeccceeEeccccCCCCcchhhh-hccceeeeeEEc--CcCceE
Confidence 1233556788999999994 455444444449999999987 556666665 788889999983 333468
Q ss_pred EeecCCCceEEEEeccCCCccccccccceeeeccCcEEEEEechhccCCCcEEEeecCceeEeeeccc
Q 000722 230 LVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVS 297 (1331)
Q Consensus 230 LaSgs~DgtIrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t 297 (1331)
|+++..||.+.+||+..... .|..+..-+....+.+.|++ .++.|++|...|++++|++..
T Consensus 457 F~~~d~~G~l~iWDLl~~~~----~Pv~s~~~~~~~l~~~~~s~---~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 457 FATVDGDGNLDIWDLLQDDE----EPVLSQKVCSPALTRVRWSP---NGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred EEEEcCCCceehhhhhcccc----CCcccccccccccceeecCC---CCcEEEEecCCCcEEEEEcCc
Confidence 99999999999999987553 23444444455567778887 799999999999999999864
No 195
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.26 E-value=1.3e-10 Score=129.78 Aligned_cols=254 Identities=10% Similarity=0.043 Sum_probs=169.6
Q ss_pred cccccCCCCCCCCceEEEEEeeccee-EeeeecccC----CCCCcc-ccccccceeeehhhcccCCCcceEeecCCCcee
Q 000722 120 TSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRG----RDIPKQ-ELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVI 193 (1331)
Q Consensus 120 ~~~V~svafspdg~~lLasgs~d~iI-vwDl~t~~~----~~i~~~-~~h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtI 193 (1331)
.+.|+++.|+.+++ ||++|++|.-. +|+....-. +.+... ..|...|.|++| .....++.+|..+++|
T Consensus 56 ~GCiNAlqFS~N~~-~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F-----~~~N~~~~SG~~~~~V 129 (609)
T KOG4227|consen 56 TGCINALQFSHNDR-FLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEF-----DLENRFLYSGERWGTV 129 (609)
T ss_pred ccccceeeeccCCe-EEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEE-----ccCCeeEecCCCccee
Confidence 77899999999986 99999999876 887653211 223222 345689999999 5667899999999999
Q ss_pred eeeehhhheeehhhcCCCcc---chhhhhHhhhccccEEEeecCCCceEEEEeccCCCccccccccceeeeccCcEEEEE
Q 000722 194 RVLSMISWKLVRRYTGGHKG---SISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVE 270 (1331)
Q Consensus 194 rlWDl~t~~~v~~~~~gH~~---~V~~vawf~~spdg~lLaSgs~DgtIrVWDl~tg~~~~~~~~~~~l~gH~~~V~sva 270 (1331)
.+.|+++.+.+..+. |.. .|+.+. .+|..+.|++.+.++.|.+||.+....-.+ .+.+........++.
T Consensus 130 I~HDiEt~qsi~V~~--~~~~~~~VY~m~---~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~---~~~~AN~~~~F~t~~ 201 (609)
T KOG4227|consen 130 IKHDIETKQSIYVAN--ENNNRGDVYHMD---QHPTDNTLIVVTRAKLVSFIDNRDRQNPIS---LVLPANSGKNFYTAE 201 (609)
T ss_pred Eeeecccceeeeeec--ccCcccceeecc---cCCCCceEEEEecCceEEEEeccCCCCCCc---eeeecCCCccceeee
Confidence 999999998887773 544 888887 788899999999999999999987652221 111222334577899
Q ss_pred echhccCCCcEEEeecCceeEeeeccchh-hhcccCCCCcccccccccccCCCCCCCceeeeeecc---eeeeeecCccc
Q 000722 271 LSRVMGGSPQLITIGADKTLAIWDTVSFK-ELRRIKPVPKLACHSVASWCHPRAPNLDILTCVKDS---HIWAIEHPTYS 346 (1331)
Q Consensus 271 fsp~~~dg~~LaSgs~Dg~IrIWDl~t~~-~l~~~~~~~~l~~H~~~V~svafspdg~lLa~s~Dg---~IWdl~~~~~~ 346 (1331)
|+|. ...+|++.+..+-+-+||.+... .+.+......+......-.++.|+|+|..+.+-.-+ -+||+-.....
T Consensus 202 F~P~--~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~ 279 (609)
T KOG4227|consen 202 FHPE--TPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCF 279 (609)
T ss_pred ecCC--CceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccce
Confidence 9994 67889999999999999988543 222211212222222222477899998755333222 25776542110
Q ss_pred cccccccccccCCCccccccccceEEEEEEeccCCccEeeecceeEEEEeecCCC
Q 000722 347 ALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPR 401 (1331)
Q Consensus 347 ~l~~~~~~~~~~~~~~~l~~h~~~~I~~la~sp~~~~lLAtGs~DG~Il~VWDlr 401 (1331)
.+. .++. +-.. -+.. .+.+++|-. .+.+++|+++-.| ++|.+.
T Consensus 280 V~k---~D~N---~~GY--~N~~-T~KS~~F~~--D~~v~tGSD~~~i-~~WklP 322 (609)
T KOG4227|consen 280 VLK---SDHN---PNGY--CNIK-TIKSMTFID--DYTVATGSDHWGI-HIWKLP 322 (609)
T ss_pred eEe---ccCC---CCcc--eeee-eeeeeeeec--ceeeeccCcccce-EEEecC
Confidence 000 0000 0000 0112 566777765 4559999999887 899874
No 196
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.24 E-value=2.1e-11 Score=137.81 Aligned_cols=168 Identities=14% Similarity=0.111 Sum_probs=128.7
Q ss_pred CcEEEEEeecCCc-eeEeecCCCceeeeccccceEEeeeccCCcccchhhhhhhhhhcccccccCCCCcccccCCceeEE
Q 000722 12 DKIVKIQLHPTHP-WLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRGGSVKQV 90 (1331)
Q Consensus 12 ~~V~~lafSPdg~-~LaSgs~DGtV~VWD~~tg~~i~s~~~~~~~~i~~vspdg~~Lasgs~d~~g~~l~~l~gg~V~sV 90 (1331)
.+|..+.|+++.. .|+||+.|..|+||-+..+..-. ....|
T Consensus 14 ~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~--------------------------------------~~~~V 55 (434)
T KOG1009|consen 14 EPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGG--------------------------------------GDMKV 55 (434)
T ss_pred CceEEEEeccCcccceecccCccceeeeeeeecCCCC--------------------------------------CceeE
Confidence 6899999999877 99999999999999876422100 00001
Q ss_pred eeecchhhHHHHhhhccccccCCcccccccccccCCCCCCCCceEEEEEeeccee-Eeeee--------c-----cc-CC
Q 000722 91 NFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLV--------T-----MR-GR 155 (1331)
Q Consensus 91 af~DgtIrvWdl~tg~~l~~~~~~~~~~~~~~V~svafspdg~~lLasgs~d~iI-vwDl~--------t-----~~-~~ 155 (1331)
.| .....+|...|+.+.|+|+|+ ++++|++++.+ +|-.. + .+ ..
T Consensus 56 ~y--------------------~s~Ls~H~~aVN~vRf~p~ge-lLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~ 114 (434)
T KOG1009|consen 56 EY--------------------LSSLSRHTRAVNVVRFSPDGE-LLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWV 114 (434)
T ss_pred EE--------------------eecccCCcceeEEEEEcCCcC-eeeecCCCceEEEEEecCcCCccccchhhhCccceE
Confidence 11 122334477889999999998 99999999987 77332 1 00 11
Q ss_pred CCCccccccccceeeehhhcccCCCcceEeecCCCceeeeeehhhheeehhhcCCCccchhhhhHhhhccccEEEeecCC
Q 000722 156 DIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGS 235 (1331)
Q Consensus 156 ~i~~~~~h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~ 235 (1331)
......+|.+.|..++| ++++.++++|+.|.++++||+..|.....+. +|.++|..++| .|-++++++-+.
T Consensus 115 v~k~lr~h~~diydL~W-----s~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~-dh~~yvqgvaw---Dpl~qyv~s~s~ 185 (434)
T KOG1009|consen 115 VKKVLRGHRDDIYDLAW-----SPDSNFLVSGSVDNSVRLWDVHAGQLLAILD-DHEHYVQGVAW---DPLNQYVASKSS 185 (434)
T ss_pred EEEEecccccchhhhhc-----cCCCceeeeeeccceEEEEEeccceeEeecc-ccccccceeec---chhhhhhhhhcc
Confidence 12335678899999999 7899999999999999999999999998886 99999999995 777889999999
Q ss_pred CceEEEEeccCC
Q 000722 236 DGLLILWSADHG 247 (1331)
Q Consensus 236 DgtIrVWDl~tg 247 (1331)
|...+.+.+...
T Consensus 186 dr~~~~~~~~~~ 197 (434)
T KOG1009|consen 186 DRHPEGFSAKLK 197 (434)
T ss_pred Ccccceeeeeee
Confidence 987777766543
No 197
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.23 E-value=2.4e-11 Score=136.53 Aligned_cols=216 Identities=13% Similarity=0.183 Sum_probs=153.9
Q ss_pred ccccCCCcEEEEEeecCC-ceeEeecCCCceeeeccccceEEeeeccCCcccchhhhhhhhhhcccccccCCCCcccccC
Q 000722 6 AFRPTNDKIVKIQLHPTH-PWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRG 84 (1331)
Q Consensus 6 ~L~gHs~~V~~lafSPdg-~~LaSgs~DGtV~VWD~~tg~~i~s~~~~~~~~i~~vspdg~~Lasgs~d~~g~~l~~l~g 84 (1331)
.+.||+..|..++|+|-. ..||||+.|.+|.||++-.+.+...+.
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~lt---------------------------------- 121 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLT---------------------------------- 121 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcc----------------------------------
Confidence 578999999999999965 589999999999999987654433332
Q ss_pred CceeEEeeecchhhHHHHhhhccccccCCcccccccccccCCCCCCCCceEEEEEeeccee-EeeeecccCCCCCccccc
Q 000722 85 GSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQELD 163 (1331)
Q Consensus 85 g~V~sVaf~DgtIrvWdl~tg~~l~~~~~~~~~~~~~~V~svafspdg~~lLasgs~d~iI-vwDl~t~~~~~i~~~~~h 163 (1331)
.+| ..+.+| ...|..+.|||...++|++++.|..+ +||+.+++. +..+. |
T Consensus 122 epv-------------------------v~L~gH-~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgea--li~l~-h 172 (472)
T KOG0303|consen 122 EPV-------------------------VELYGH-QRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEA--LITLD-H 172 (472)
T ss_pred cce-------------------------EEEeec-ceeEEEEeecccchhhHhhccCCceEEEEeccCCce--eeecC-C
Confidence 011 122333 45566788999887777777766666 999999753 33344 9
Q ss_pred cccceeeehhhcccCCCcceEeecCCCceeeeeehhhheeehhhcCCCccchhhhhHhhhccccEEEeecC---CCceEE
Q 000722 164 NKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGG---SDGLLI 240 (1331)
Q Consensus 164 ~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs---~DgtIr 240 (1331)
.+-|.++.| +.+|.++++.+.|..|||||.++++.+..-. +|.+.-..-+ .|-.++.++-||- .++.+-
T Consensus 173 pd~i~S~sf-----n~dGs~l~TtckDKkvRv~dpr~~~~v~e~~-~heG~k~~Ra--ifl~~g~i~tTGfsr~seRq~a 244 (472)
T KOG0303|consen 173 PDMVYSMSF-----NRDGSLLCTTCKDKKVRVIDPRRGTVVSEGV-AHEGAKPARA--IFLASGKIFTTGFSRMSERQIA 244 (472)
T ss_pred CCeEEEEEe-----ccCCceeeeecccceeEEEcCCCCcEeeecc-cccCCCccee--EEeccCceeeecccccccccee
Confidence 999999999 7899999999999999999999999988764 7766543332 1456777555553 478899
Q ss_pred EEeccCCCccccccccceeeeccCcEEEEEechhccCCCcEE-EeecCceeEeeeccchh
Q 000722 241 LWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLI-TIGADKTLAIWDTVSFK 299 (1331)
Q Consensus 241 VWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~La-Sgs~Dg~IrIWDl~t~~ 299 (1331)
+||..+-..- .....+. .+++|.---|.+ +..++. +|-.|+.||-|.+....
T Consensus 245 Lwdp~nl~eP---~~~~elD-tSnGvl~PFyD~---dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 245 LWDPNNLEEP---IALQELD-TSNGVLLPFYDP---DTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred ccCcccccCc---ceeEEec-cCCceEEeeecC---CCCEEEEEecCCcceEEEEecCCC
Confidence 9997764321 1111222 345676666777 555554 55579999999987644
No 198
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.22 E-value=2.3e-11 Score=133.64 Aligned_cols=310 Identities=15% Similarity=0.178 Sum_probs=195.3
Q ss_pred EEEeecCCceeEeecCCCceeeeccccceEEeeeccCCcccchhhhhhhhhhcccccccCCCCcccccCCceeEEeeecc
Q 000722 16 KIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRGGSVKQVNFYDD 95 (1331)
Q Consensus 16 ~lafSPdg~~LaSgs~DGtV~VWD~~tg~~i~s~~~~~~~~i~~vspdg~~Lasgs~d~~g~~l~~l~gg~V~sVaf~Dg 95 (1331)
-+.|||+|+|+|+++.. .+.|-|.+|-+..+-|.+- +.+ .++... ...-.+.++.+.|+
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~cl--dki-------~yieW~-----------ads~~ilC~~yk~~ 71 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLCL--DKI-------VYIEWK-----------ADSCHILCVAYKDP 71 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHHH--HHh-------hheeee-----------ccceeeeeeeeccc
Confidence 35799999999999766 7888888876554444321 111 111111 01235667777899
Q ss_pred hhhHHHHhhhccccccCCcccccccccccCCCCCCCCceEEEEEeeccee-EeeeecccCCCCCccccccccceeeehhh
Q 000722 96 DVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQELDNKSLVCMEFLS 174 (1331)
Q Consensus 96 tIrvWdl~tg~~l~~~~~~~~~~~~~~V~svafspdg~~lLasgs~d~iI-vwDl~t~~~~~i~~~~~h~~~V~~Vaf~P 174 (1331)
.|.+|++...+.. .....-...+.+++|+|||+++|.+..-+-.+ +|.+.+.++..+ ......+..++|
T Consensus 72 ~vqvwsl~Qpew~-----ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~---~~pK~~~kg~~f-- 141 (447)
T KOG4497|consen 72 KVQVWSLVQPEWY-----CKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLL---PHPKTNVKGYAF-- 141 (447)
T ss_pred eEEEEEeecceeE-----EEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEe---cccccCceeEEE--
Confidence 9999998776532 11122245677899999999888888877666 999888554332 222445678899
Q ss_pred cccCCCcceEeecCCCc---eeeeeehhhheeehhhcCCCccchhhhhHhhhccccEEEeecCCCceEEEEeccCCCccc
Q 000722 175 RSAVGDVPLVAFGSSDG---VIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSR 251 (1331)
Q Consensus 175 ~s~Spdg~~LasGs~DG---tIrlWDl~t~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrVWDl~tg~~~~ 251 (1331)
+++|++.+..+.-. .+.|..-+.+..++.+. -.+-..+.+.| +|||+.|+ |||---.-.+
T Consensus 142 ---~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~-~dT~DltgieW---sPdg~~la---------Vwd~~Leykv- 204 (447)
T KOG4497|consen 142 ---HPDGQFCAILSRRDCKDYVQISSCKAWILLKEFK-LDTIDLTGIEW---SPDGNWLA---------VWDNVLEYKV- 204 (447)
T ss_pred ---CCCCceeeeeecccHHHHHHHHhhHHHHHHHhcC-CCcccccCceE---CCCCcEEE---------Eecchhhhee-
Confidence 67999988887532 34444445566666665 45566677774 78887665 5653211100
Q ss_pred cccccceeeeccCcEEEEEechhccCCCcEEEeecCceeEeeeccchhhhccc---------------------------
Q 000722 252 ELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRI--------------------------- 304 (1331)
Q Consensus 252 ~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~--------------------------- 304 (1331)
+ .....-++..++|+| .+++|+.|+.|+.+||-+--+.+....+
T Consensus 205 -----~-aYe~~lG~k~v~wsP---~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~ 275 (447)
T KOG4497|consen 205 -----Y-AYERGLGLKFVEWSP---CNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHH 275 (447)
T ss_pred -----e-eeeeccceeEEEecc---ccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhccc
Confidence 0 112235688999999 8899999999999998654332211111
Q ss_pred ---------------------------------CCCCcccccccccccCCCCCCCceeeeeecce-----eeeeecCccc
Q 000722 305 ---------------------------------KPVPKLACHSVASWCHPRAPNLDILTCVKDSH-----IWAIEHPTYS 346 (1331)
Q Consensus 305 ---------------------------------~~~~~l~~H~~~V~svafspdg~lLa~s~Dg~-----IWdl~~~~~~ 346 (1331)
++..........+.-++|++|..+++.-.|.. +||++..+.
T Consensus 276 cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l- 354 (447)
T KOG4497|consen 276 CLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKL- 354 (447)
T ss_pred ccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhh-
Confidence 11111112223456788999999888877763 678775321
Q ss_pred cccccccccccCCCccccccccceEEEEEEeccCCccEeeecceeEEEEeecCCC
Q 000722 347 ALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPR 401 (1331)
Q Consensus 347 ~l~~~~~~~~~~~~~~~l~~h~~~~I~~la~sp~~~~lLAtGs~DG~Il~VWDlr 401 (1331)
...-.... +|....|+|..++++++.+.... ++|...
T Consensus 355 ---------------~avLiQk~-piraf~WdP~~prL~vctg~srL--Y~W~ps 391 (447)
T KOG4497|consen 355 ---------------HAVLIQKH-PIRAFEWDPGRPRLVVCTGKSRL--YFWAPS 391 (447)
T ss_pred ---------------hhhhhhcc-ceeEEEeCCCCceEEEEcCCceE--EEEcCC
Confidence 11111223 79999999988887777666665 688754
No 199
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.22 E-value=8.1e-11 Score=144.09 Aligned_cols=296 Identities=13% Similarity=0.122 Sum_probs=189.7
Q ss_pred cCCCcEEEEEeecCCceeEeecCCCceeeecccc--c--eEEeeeccCCcccchhhh--hhhhhhcccccccCCCCcccc
Q 000722 9 PTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEH--R--QVIYELKAGGVDQRRLVG--AKLEKLAEGELEHKGKPTEAM 82 (1331)
Q Consensus 9 gHs~~V~~lafSPdg~~LaSgs~DGtV~VWD~~t--g--~~i~s~~~~~~~~i~~vs--pdg~~Lasgs~d~~g~~l~~l 82 (1331)
.|+-.++|.++||+++++++|..||.|.||.--. + .....++.|| +.+.+.. ++|..|.+|+
T Consensus 203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~-~~V~~L~fS~~G~~LlSGG----------- 270 (792)
T KOG1963|consen 203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHH-DEVNSLSFSSDGAYLLSGG----------- 270 (792)
T ss_pred hhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecc-cccceeEEecCCceEeecc-----------
Confidence 4666799999999999999999999999995321 1 2234445443 3333333 5666665553
Q ss_pred cCCceeEEeeecchhhHHHHhhhccccccCCcccccccccccCCCCCCCCceEEEEEeecceeEeeeecccCC-CCCcc-
Q 000722 83 RGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFLDLVTMRGR-DIPKQ- 160 (1331)
Q Consensus 83 ~gg~V~sVaf~DgtIrvWdl~tg~~l~~~~~~~~~~~~~~V~svafspdg~~lLasgs~d~iIvwDl~t~~~~-~i~~~- 160 (1331)
..+.+-+|.+.+++. .+.-...+.|..+.++||+..+.+++.++.++++...++..+ .+..+
T Consensus 271 ----------~E~VLv~Wq~~T~~k------qfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~ 334 (792)
T KOG1963|consen 271 ----------REGVLVLWQLETGKK------QFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIK 334 (792)
T ss_pred ----------cceEEEEEeecCCCc------ccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCcc
Confidence 367778899888762 122223567888999999996767777666666654332211 11111
Q ss_pred -------ccccccceeeehhhcccCCCcceEeecCCCceeeeeehhhheeehhhc----C------CCccchhhhhHhhh
Q 000722 161 -------ELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYT----G------GHKGSISCLMTFMA 223 (1331)
Q Consensus 161 -------~~h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~~~v~~~~----~------gH~~~V~~vawf~~ 223 (1331)
....+-.+.+.+ +|..+.++-.+..|.|.+||+.+.+.+..+. . .+...++.+. .
T Consensus 335 ~~~~~~k~~~~~l~t~~~i-----dpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~---~ 406 (792)
T KOG1963|consen 335 PPTPSTKTRPQSLTTGVSI-----DPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVA---R 406 (792)
T ss_pred CCCccccccccccceeEEE-----cCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeeh---h
Confidence 112445566777 5555667778899999999998766554431 0 1233455554 5
Q ss_pred ccccEEEeecC--------CC--ceEEEEeccCCCccccccccceeeeccCcEEEEEechhccCCCcEEEeecCceeEee
Q 000722 224 SSGEALLVSGG--------SD--GLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIW 293 (1331)
Q Consensus 224 spdg~lLaSgs--------~D--gtIrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIW 293 (1331)
+..|.+++|.- .| -.+++|-.........+.. .....|...+...++.+. ......+++|.||.++||
T Consensus 407 ~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T-~I~~PH~~~~vat~~~~~-~rs~~~vta~~dg~~KiW 484 (792)
T KOG1963|consen 407 SRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNT-KINNPHGNAFVATIFLNP-TRSVRCVTASVDGDFKIW 484 (792)
T ss_pred hccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEE-EEecCCCceeEEEEEecC-cccceeEEeccCCeEEEE
Confidence 56688888752 33 3577898765543222111 123468777766666652 123389999999999999
Q ss_pred eccchhhhcccCCCC----cccccccccccCCCCCCCceeeeeecce--eeeeec
Q 000722 294 DTVSFKELRRIKPVP----KLACHSVASWCHPRAPNLDILTCVKDSH--IWAIEH 342 (1331)
Q Consensus 294 Dl~t~~~l~~~~~~~----~l~~H~~~V~svafspdg~lLa~s~Dg~--IWdl~~ 342 (1331)
-+.+.+.+....... .-..|...+.+.+|+.||.+|++|.|++ +||..+
T Consensus 485 ~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla~s~~~~Itiwd~~~ 539 (792)
T KOG1963|consen 485 VFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLAVSFDDTITIWDYDT 539 (792)
T ss_pred EEecccccCcCccceEEeeeeccccCcccchhhcCCCcEEEEecCCEEEEecCCC
Confidence 986544332221111 1124677899999999999999998886 899886
No 200
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.19 E-value=3.7e-10 Score=132.92 Aligned_cols=249 Identities=9% Similarity=-0.001 Sum_probs=139.5
Q ss_pred cCCCCCCCCceEEEEEeecc-eeEeeee-cccCCCCCccccccccceeeehhhcccCCCcceEeecC-CCceeeeeehhh
Q 000722 124 ASPPPSTKGRHFLVICCVNK-AIFLDLV-TMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGS-SDGVIRVLSMIS 200 (1331)
Q Consensus 124 ~svafspdg~~lLasgs~d~-iIvwDl~-t~~~~~i~~~~~h~~~V~~Vaf~P~s~Spdg~~LasGs-~DGtIrlWDl~t 200 (1331)
..+.++|+++.+++++..+. +..|++. +++...+... .....+..+.| +|+++++++++ .++.|.+|++.+
T Consensus 38 ~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~-~~~~~p~~i~~-----~~~g~~l~v~~~~~~~v~v~~~~~ 111 (330)
T PRK11028 38 QPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAES-PLPGSPTHIST-----DHQGRFLFSASYNANCVSVSPLDK 111 (330)
T ss_pred ccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeee-cCCCCceEEEE-----CCCCCEEEEEEcCCCeEEEEEECC
Confidence 34678999985555544344 4467775 2222111111 12335667889 77899888776 488999999964
Q ss_pred h-e---eehhhcCCCccchhhhhHhhhccccEEE-eecCCCceEEEEeccCCCcccccc-ccceeeeccCcEEEEEechh
Q 000722 201 W-K---LVRRYTGGHKGSISCLMTFMASSGEALL-VSGGSDGLLILWSADHGQDSRELV-PKLSLKAHDGGVVAVELSRV 274 (1331)
Q Consensus 201 ~-~---~v~~~~~gH~~~V~~vawf~~spdg~lL-aSgs~DgtIrVWDl~tg~~~~~~~-~~~~l~gH~~~V~svafsp~ 274 (1331)
. . .+..+. +.....+++ ++|+++++ ++...++.|.+||+.+...+.... ...... .......+.|+|
T Consensus 112 ~g~~~~~~~~~~--~~~~~~~~~---~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~-~g~~p~~~~~~p- 184 (330)
T PRK11028 112 DGIPVAPIQIIE--GLEGCHSAN---IDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTV-EGAGPRHMVFHP- 184 (330)
T ss_pred CCCCCCceeecc--CCCcccEeE---eCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecC-CCCCCceEEECC-
Confidence 2 2 222221 223344554 68888777 455667999999998633221100 001111 123467899999
Q ss_pred ccCCCcEEEeec-CceeEeeeccc--hh--hhcccCCCCcccccccccccCCCCCCCceeeee--ecce--eeeeecCcc
Q 000722 275 MGGSPQLITIGA-DKTLAIWDTVS--FK--ELRRIKPVPKLACHSVASWCHPRAPNLDILTCV--KDSH--IWAIEHPTY 345 (1331)
Q Consensus 275 ~~dg~~LaSgs~-Dg~IrIWDl~t--~~--~l~~~~~~~~l~~H~~~V~svafspdg~lLa~s--~Dg~--IWdl~~~~~ 345 (1331)
++++++++.. +++|.+||+.. ++ .++.+.....-..+......+.++|+++++..+ .++. +|++.....
T Consensus 185 --dg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~ 262 (330)
T PRK11028 185 --NQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGS 262 (330)
T ss_pred --CCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCC
Confidence 8888877765 99999999973 22 222221110000111122357789999966333 2343 788864311
Q ss_pred ccccccccccccCCCccccccccceEEEEEEeccCCccEeeecceeEEEEeecCCC
Q 000722 346 SALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPR 401 (1331)
Q Consensus 346 ~~l~~~~~~~~~~~~~~~l~~h~~~~I~~la~sp~~~~lLAtGs~DG~Il~VWDlr 401 (1331)
. + . ....... .. ..+.+.++|++.+++++...++.| .+|++.
T Consensus 263 ~-~--~--------~~~~~~~-~~-~p~~~~~~~dg~~l~va~~~~~~v-~v~~~~ 304 (330)
T PRK11028 263 V-L--S--------FEGHQPT-ET-QPRGFNIDHSGKYLIAAGQKSHHI-SVYEID 304 (330)
T ss_pred e-E--E--------EeEEEec-cc-cCCceEECCCCCEEEEEEccCCcE-EEEEEc
Confidence 0 0 0 0001111 11 345689999655655555567887 788764
No 201
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.18 E-value=8.7e-11 Score=126.30 Aligned_cols=246 Identities=17% Similarity=0.186 Sum_probs=170.1
Q ss_pred cccccCCCCCCCCceEEEEEeeccee-EeeeecccCCCCCccc-cccccceeeehhhcccCCCcceEeecCCCceeeeee
Q 000722 120 TSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQE-LDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLS 197 (1331)
Q Consensus 120 ~~~V~svafspdg~~lLasgs~d~iI-vwDl~t~~~~~i~~~~-~h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWD 197 (1331)
...|+++.|..+++ |.+|...+++ +|++++.+. ...+. .+...|+.+...| + ..+.+-+.|+.+.+|+
T Consensus 14 ~~~v~s~~fqa~~r--L~sg~~~G~V~~w~lqt~r~--~~~~r~~g~~~it~lq~~p-----~-d~l~tqgRd~~L~lw~ 83 (323)
T KOG0322|consen 14 SSSVTSVLFQANER--LMSGLSVGIVKMWVLQTERD--LPLIRLFGRLFITNLQSIP-----N-DSLDTQGRDPLLILWT 83 (323)
T ss_pred cchheehhhccchh--hhcccccceEEEEEeecCcc--chhhhhhccceeeceeecC-----C-cchhhcCCCceEEEEE
Confidence 66788999988774 6667666666 899998653 44455 5677888888843 3 5677778999999998
Q ss_pred hhhheee--------------hhh--------------------------------------cCCCccchhhhhHhhhcc
Q 000722 198 MISWKLV--------------RRY--------------------------------------TGGHKGSISCLMTFMASS 225 (1331)
Q Consensus 198 l~t~~~v--------------~~~--------------------------------------~~gH~~~V~~vawf~~sp 225 (1331)
+..+..+ ..+ ..+..+.++|..|-+-..
T Consensus 84 ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~ 163 (323)
T KOG0322|consen 84 IAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACG 163 (323)
T ss_pred ccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeecccccc
Confidence 7541110 000 001223455554311111
Q ss_pred ccEEEeecCCCceEEEEeccCCCcccc----ccccceeeeccCcEEEEEechhccCCCcEEEeecCceeEeeeccch--h
Q 000722 226 GEALLVSGGSDGLLILWSADHGQDSRE----LVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSF--K 299 (1331)
Q Consensus 226 dg~lLaSgs~DgtIrVWDl~tg~~~~~----~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~--~ 299 (1331)
..-+++.|-.+|.+.+||+.++..+-. +........|..+|.++.|.+ ....=++|+.+..+..|+++.. .
T Consensus 164 s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas---~~~rGisgga~dkl~~~Sl~~s~gs 240 (323)
T KOG0322|consen 164 STFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYAS---SCDRGISGGADDKLVMYSLNHSTGS 240 (323)
T ss_pred ceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeech---hhcCCcCCCccccceeeeeccccCc
Confidence 123567788999999999998743322 222334567999999999998 4455678888999999988743 2
Q ss_pred hhcccCCCCcccccccccccCCCCCCCcee-eeeecce--eeeeecCccccccccccccccCCCccccccccceEEEEEE
Q 000722 300 ELRRIKPVPKLACHSVASWCHPRAPNLDIL-TCVKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMV 376 (1331)
Q Consensus 300 ~l~~~~~~~~l~~H~~~V~svafspdg~lL-a~s~Dg~--IWdl~~~~~~~l~~~~~~~~~~~~~~~l~~h~~~~I~~la 376 (1331)
+... ....-....|..+.+-||++++ ++|.|++ ||..++. .++..+..|+. .|.+++
T Consensus 241 lq~~----~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl---------------~pLAVLkyHsa-gvn~vA 300 (323)
T KOG0322|consen 241 LQIR----KEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTL---------------NPLAVLKYHSA-GVNAVA 300 (323)
T ss_pred cccc----ceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccC---------------Cchhhhhhhhc-ceeEEE
Confidence 2111 1122333467788899999988 6789986 6766653 56778899997 999999
Q ss_pred eccCCccEeeecceeEEEEeecCC
Q 000722 377 AHSLQPHLVATGTNVGVIISEFDP 400 (1331)
Q Consensus 377 ~sp~~~~lLAtGs~DG~Il~VWDl 400 (1331)
|+| +..++|.++.|+.| .+|++
T Consensus 301 fsp-d~~lmAaaskD~rI-SLWkL 322 (323)
T KOG0322|consen 301 FSP-DCELMAAASKDARI-SLWKL 322 (323)
T ss_pred eCC-CCchhhhccCCceE-Eeeec
Confidence 999 57789999999998 89985
No 202
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.18 E-value=8.3e-11 Score=134.07 Aligned_cols=198 Identities=21% Similarity=0.225 Sum_probs=143.2
Q ss_pred EEEEeecCCceeEeecCCCceeeeccccceEEeeeccCCcccchhhhhhhhhhcccccccCCCCcccccCCceeEEeeec
Q 000722 15 VKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRGGSVKQVNFYD 94 (1331)
Q Consensus 15 ~~lafSPdg~~LaSgs~DGtV~VWD~~tg~~i~s~~~~~~~~i~~vspdg~~Lasgs~d~~g~~l~~l~gg~V~sVaf~D 94 (1331)
.+++|+.+|..|++++.||++|||++.....+.....+
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~------------------------------------------ 185 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAH------------------------------------------ 185 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhh------------------------------------------
Confidence 88999999999999999999999998754433333212
Q ss_pred chhhHHHHhhhccccccCCcccccccccccCCCCCCCCceEEEEEeecceeEeeeecccCCCCCccccccccceeeehhh
Q 000722 95 DDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFLDLVTMRGRDIPKQELDNKSLVCMEFLS 174 (1331)
Q Consensus 95 gtIrvWdl~tg~~l~~~~~~~~~~~~~~V~svafspdg~~lLasgs~d~iIvwDl~t~~~~~i~~~~~h~~~V~~Vaf~P 174 (1331)
...|.++.|+|||+ +|++-+.+...+|+.+++...........+.....+.|
T Consensus 186 -------------------------~~eV~DL~FS~dgk-~lasig~d~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF-- 237 (398)
T KOG0771|consen 186 -------------------------HAEVKDLDFSPDGK-FLASIGADSARVWSVNTGAALARKTPFSKDEMFSSCRF-- 237 (398)
T ss_pred -------------------------cCccccceeCCCCc-EEEEecCCceEEEEeccCchhhhcCCcccchhhhhcee--
Confidence 33467889999998 88888778777999998743222221222334555667
Q ss_pred cccCCCc-----ceEeecCCCceeeeeehhhhee-----ehhhcCCCccchhhhhHhhhccccEEEeecCCCceEEEEec
Q 000722 175 RSAVGDV-----PLVAFGSSDGVIRVLSMISWKL-----VRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSA 244 (1331)
Q Consensus 175 ~s~Spdg-----~~LasGs~DGtIrlWDl~t~~~-----v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrVWDl 244 (1331)
+.++ ..++.-..-+.|+.||+..++. .+... .....|.+++ .+.+|++++.|+.||.|-|++.
T Consensus 238 ---~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~-~~~~siSsl~---VS~dGkf~AlGT~dGsVai~~~ 310 (398)
T KOG0771|consen 238 ---SVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKI-KRFKSISSLA---VSDDGKFLALGTMDGSVAIYDA 310 (398)
T ss_pred ---cccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhh-hccCcceeEE---EcCCCcEEEEeccCCcEEEEEe
Confidence 4444 3334444566777777654432 11111 2335788887 8999999999999999999999
Q ss_pred cCCCccccccccceeeeccCcEEEEEechhccCCCcEEEeecCceeEeeeccc
Q 000722 245 DHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVS 297 (1331)
Q Consensus 245 ~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t 297 (1331)
.+-+.++- .-+.|..-|+.+.|+| +.+++++.+.|.+.+|..+.-
T Consensus 311 ~~lq~~~~-----vk~aH~~~VT~ltF~P---dsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 311 KSLQRLQY-----VKEAHLGFVTGLTFSP---DSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred ceeeeeEe-----ehhhheeeeeeEEEcC---CcCcccccccCCceeEEEEee
Confidence 87765432 2367999999999999 889999999999999987754
No 203
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.18 E-value=1.5e-10 Score=123.10 Aligned_cols=212 Identities=19% Similarity=0.227 Sum_probs=147.7
Q ss_pred cceeeehhhcccCCCcceEeecCCCceeeeeehhh---------he-eehhhcCCCccchhhhhHhhhccccEEEeecCC
Q 000722 166 SLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMIS---------WK-LVRRYTGGHKGSISCLMTFMASSGEALLVSGGS 235 (1331)
Q Consensus 166 ~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t---------~~-~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~ 235 (1331)
.|..-+| +|.+++++.|+.+|.|.++.+.+ ++ .+..+. +|.++|+.++ |. ..+|++|+
T Consensus 12 tvf~qa~-----sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eq-ahdgpiy~~~---f~--d~~Lls~g- 79 (325)
T KOG0649|consen 12 TVFAQAI-----SPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQ-AHDGPIYYLA---FH--DDFLLSGG- 79 (325)
T ss_pred HHHHHhh-----CCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeecc-ccCCCeeeee---ee--hhheeecc-
Confidence 3444556 77899999999999999998864 12 222333 8999999998 34 45777766
Q ss_pred CceEEEEeccCCCc------cccc-cccceeeeccCcEEEEEechhccCCCcEEEeecCceeEeeeccchhhhcccCCCC
Q 000722 236 DGLLILWSADHGQD------SREL-VPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVP 308 (1331)
Q Consensus 236 DgtIrVWDl~tg~~------~~~~-~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~ 308 (1331)
||.|+-|..+.... +.+. .|..+-...--.|+++...| ...-++.++.|+.++-||+++|+..++
T Consensus 80 dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP---~enSi~~AgGD~~~y~~dlE~G~i~r~----- 151 (325)
T KOG0649|consen 80 DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDP---SENSILFAGGDGVIYQVDLEDGRIQRE----- 151 (325)
T ss_pred CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEecc---CCCcEEEecCCeEEEEEEecCCEEEEE-----
Confidence 49999987654321 1111 01111000112489999998 556666677899999999999997766
Q ss_pred cccccccccccCCC-CCCCceeeeeecce--eeeeecCccccccccccccccCCCccccccccceEEEEEEeccCCccEe
Q 000722 309 KLACHSVASWCHPR-APNLDILTCVKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLV 385 (1331)
Q Consensus 309 ~l~~H~~~V~svaf-spdg~lLa~s~Dg~--IWdl~~~~~~~l~~~~~~~~~~~~~~~l~~h~~~~I~~la~sp~~~~lL 385 (1331)
+++|++.|.++.- +.++++++|++||+ |||.++.+...+.... +....+++|....|-|++.+.+ .+
T Consensus 152 -~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~y------k~~~~lRp~~g~wigala~~ed---Wl 221 (325)
T KOG0649|consen 152 -YRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPY------KNPNLLRPDWGKWIGALAVNED---WL 221 (325)
T ss_pred -EcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccc------cChhhcCcccCceeEEEeccCc---eE
Confidence 7999999999887 77888999999995 8999987544433322 2233455666657888887663 57
Q ss_pred eecceeEEEEeecCCCCCCCCCCC
Q 000722 386 ATGTNVGVIISEFDPRSLPAVAPL 409 (1331)
Q Consensus 386 AtGs~DG~Il~VWDlr~~p~i~~~ 409 (1331)
++|+.-.. .+|.++...+.+.+
T Consensus 222 vCGgGp~l--slwhLrsse~t~vf 243 (325)
T KOG0649|consen 222 VCGGGPKL--SLWHLRSSESTCVF 243 (325)
T ss_pred EecCCCce--eEEeccCCCceEEE
Confidence 88877766 59999875554443
No 204
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.17 E-value=8.7e-11 Score=137.43 Aligned_cols=226 Identities=15% Similarity=0.121 Sum_probs=146.6
Q ss_pred ccee-Eeeeecc-cCCC-CCccccccccceeeehhhcccCCCcceEeecCCCceeeeeehhhhe-------eehhhcCCC
Q 000722 142 NKAI-FLDLVTM-RGRD-IPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWK-------LVRRYTGGH 211 (1331)
Q Consensus 142 d~iI-vwDl~t~-~~~~-i~~~~~h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~~-------~v~~~~~gH 211 (1331)
.+.| +++++.. +... +.-.......|+.+.|.|. |...|+++++||.|++|.+..+. .-..+. +|
T Consensus 602 gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPF----D~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt-~h 676 (1012)
T KOG1445|consen 602 GGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPF----DDERLAVATDDGQINLWRLTANGLPENEMTPEKILT-IH 676 (1012)
T ss_pred CceEEEEEcCCCCCCCcccccccccCceeeecccCCC----ChHHeeecccCceEEEEEeccCCCCcccCCcceeee-cc
Confidence 4444 7777642 2111 1111234568999999653 67889999999999999997542 223344 89
Q ss_pred ccchhhhhHhhhccccEEEeecCCCceEEEEeccCCCccccccccceeeeccCcEEEEEechhccCCCcEEEeecCceeE
Q 000722 212 KGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLA 291 (1331)
Q Consensus 212 ~~~V~~vawf~~spdg~lLaSgs~DgtIrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~Ir 291 (1331)
...|+++.|+ +--.+.|++++.|.+|++||+.+++. ...+.+|.+.|.+++|+| +|+.+++.+.||+|+
T Consensus 677 ~eKI~slRfH--PLAadvLa~asyd~Ti~lWDl~~~~~------~~~l~gHtdqIf~~AWSp---dGr~~AtVcKDg~~r 745 (1012)
T KOG1445|consen 677 GEKITSLRFH--PLAADVLAVASYDSTIELWDLANAKL------YSRLVGHTDQIFGIAWSP---DGRRIATVCKDGTLR 745 (1012)
T ss_pred cceEEEEEec--chhhhHhhhhhccceeeeeehhhhhh------hheeccCcCceeEEEECC---CCcceeeeecCceEE
Confidence 9999999842 33456899999999999999998864 334799999999999999 999999999999999
Q ss_pred eeeccchhh-hcccCCCCcccccccccccCCCCCCCcee-eeeecce------eeeeecCccccccccccccccCCCccc
Q 000722 292 IWDTVSFKE-LRRIKPVPKLACHSVASWCHPRAPNLDIL-TCVKDSH------IWAIEHPTYSALTRPLCELSSLVPPQV 363 (1331)
Q Consensus 292 IWDl~t~~~-l~~~~~~~~l~~H~~~V~svafspdg~lL-a~s~Dg~------IWdl~~~~~~~l~~~~~~~~~~~~~~~ 363 (1331)
+|+-+++.. ++.-+. ..+- .--.+.|.-+|+++ ..|.|.. +||..+.....+.....+...
T Consensus 746 Vy~Prs~e~pv~Eg~g---pvgt--RgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvap------ 814 (1012)
T KOG1445|consen 746 VYEPRSREQPVYEGKG---PVGT--RGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAP------ 814 (1012)
T ss_pred EeCCCCCCCccccCCC---CccC--cceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecccC------
Confidence 999887653 222111 1111 11135566678765 4455541 566554221111111101000
Q ss_pred cccccceEEEEEEeccCCccEeeecceeEEEEeecCCCC
Q 000722 364 LAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPRS 402 (1331)
Q Consensus 364 l~~h~~~~I~~la~sp~~~~lLAtGs~DG~Il~VWDlr~ 402 (1331)
.+.--.+.++.+.++++|-.|..| .+|.+..
T Consensus 815 -------s~LvP~YD~Ds~~lfltGKGD~~v-~~yEv~~ 845 (1012)
T KOG1445|consen 815 -------SPLVPHYDYDSNVLFLTGKGDRFV-NMYEVIY 845 (1012)
T ss_pred -------ccccccccCCCceEEEecCCCceE-EEEEecC
Confidence 111112334456789999999998 7888743
No 205
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.13 E-value=4e-10 Score=137.63 Aligned_cols=218 Identities=11% Similarity=0.036 Sum_probs=144.6
Q ss_pred cccccCCCcEEEEEeecCCceeEeecCC---CceeeeccccceEEe--eeccCCcccchhhhhhhhhhcccccccCCCCc
Q 000722 5 KAFRPTNDKIVKIQLHPTHPWLVTADAS---DHVSVWNWEHRQVIY--ELKAGGVDQRRLVGAKLEKLAEGELEHKGKPT 79 (1331)
Q Consensus 5 ~~L~gHs~~V~~lafSPdg~~LaSgs~D---GtV~VWD~~tg~~i~--s~~~~~~~~i~~vspdg~~Lasgs~d~~g~~l 79 (1331)
+.+..|...|.+.+|||||++|+.++.+ ..|.+||+.+++... .+.
T Consensus 197 ~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~----------------------------- 247 (429)
T PRK01742 197 FIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFR----------------------------- 247 (429)
T ss_pred eEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCC-----------------------------
Confidence 4567788899999999999999887643 369999988764321 111
Q ss_pred ccccCCceeEEeeecchhhHHHHhhhccccccCCcccccccccccCCCCCCCCceEEEEEeeccee---EeeeecccCCC
Q 000722 80 EAMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI---FLDLVTMRGRD 156 (1331)
Q Consensus 80 ~~l~gg~V~sVaf~DgtIrvWdl~tg~~l~~~~~~~~~~~~~~V~svafspdg~~lLasgs~d~iI---vwDl~t~~~~~ 156 (1331)
+ ....++|+|||+.++++...++.. +||..++..
T Consensus 248 -------------------------------------g----~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~-- 284 (429)
T PRK01742 248 -------------------------------------G----HNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTP-- 284 (429)
T ss_pred -------------------------------------C----ccCceeECCCCCEEEEEEecCCcEEEEEEECCCCCe--
Confidence 0 012467899998555555445433 446655432
Q ss_pred CCccccccccceeeehhhcccCCCcceEeecC-CCceeeeeehhhh-eeehhhcCCCccchhhhhHhhhccccEEEeecC
Q 000722 157 IPKQELDNKSLVCMEFLSRSAVGDVPLVAFGS-SDGVIRVLSMISW-KLVRRYTGGHKGSISCLMTFMASSGEALLVSGG 234 (1331)
Q Consensus 157 i~~~~~h~~~V~~Vaf~P~s~Spdg~~LasGs-~DGtIrlWDl~t~-~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs 234 (1331)
..+..+...+.+..| +|||+.|+..+ .+|..+||++... .....+ ++.. .+.. ++|+|+.|+.++
T Consensus 285 -~~lt~~~~~~~~~~w-----SpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l--~~~~--~~~~---~SpDG~~ia~~~ 351 (429)
T PRK01742 285 -SQLTSGAGNNTEPSW-----SPDGQSILFTSDRSGSPQVYRMSASGGGASLV--GGRG--YSAQ---ISADGKTLVMIN 351 (429)
T ss_pred -EeeccCCCCcCCEEE-----CCCCCEEEEEECCCCCceEEEEECCCCCeEEe--cCCC--CCcc---CCCCCCEEEEEc
Confidence 233445566788999 78999777554 5788899987532 222222 3333 3454 699999998887
Q ss_pred CCceEEEEeccCCCccccccccceeeeccCcEEEEEechhccCCCcEEEeecCceeEeeecc--chhhhcccCCCCcccc
Q 000722 235 SDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTV--SFKELRRIKPVPKLAC 312 (1331)
Q Consensus 235 ~DgtIrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~--t~~~l~~~~~~~~l~~ 312 (1331)
.++. .+||+.+++.... ...+ ...++.|+| ++++|+.++.++.+++|++. +|+..++ +..
T Consensus 352 ~~~i-~~~Dl~~g~~~~l------t~~~--~~~~~~~sP---dG~~i~~~s~~g~~~~l~~~~~~G~~~~~------l~~ 413 (429)
T PRK01742 352 GDNV-VKQDLTSGSTEVL------SSTF--LDESPSISP---NGIMIIYSSTQGLGKVLQLVSADGRFKAR------LPG 413 (429)
T ss_pred CCCE-EEEECCCCCeEEe------cCCC--CCCCceECC---CCCEEEEEEcCCCceEEEEEECCCCceEE------ccC
Confidence 7664 4599988763211 0111 234678999 89999999999999988864 4555555 567
Q ss_pred cccccccCCCCCC
Q 000722 313 HSVASWCHPRAPN 325 (1331)
Q Consensus 313 H~~~V~svafspd 325 (1331)
|.+.+...+|+|-
T Consensus 414 ~~g~~~~p~wsp~ 426 (429)
T PRK01742 414 SDGQVKFPAWSPY 426 (429)
T ss_pred CCCCCCCcccCCC
Confidence 7777888999885
No 206
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.12 E-value=8.6e-10 Score=136.06 Aligned_cols=248 Identities=15% Similarity=0.122 Sum_probs=157.5
Q ss_pred ccCCCCCCCCceEEEEEeecceeEeeeecccCCC-CCccccccccceeeehhhcccCCCcceEeecCCCceeeeeehhh-
Q 000722 123 FASPPPSTKGRHFLVICCVNKAIFLDLVTMRGRD-IPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMIS- 200 (1331)
Q Consensus 123 V~svafspdg~~lLasgs~d~iIvwDl~t~~~~~-i~~~~~h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t- 200 (1331)
-..+.|+|-.+.++++...+.+.+||++.++... ..........|+.+.+.. .-|..++++|+.||.||||+--.
T Consensus 1067 pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liN---e~D~aLlLtas~dGvIRIwk~y~~ 1143 (1387)
T KOG1517|consen 1067 PKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELIN---EQDDALLLTASSDGVIRIWKDYAD 1143 (1387)
T ss_pred CceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeec---ccchhheeeeccCceEEEeccccc
Confidence 4457788888745454446677799988755321 111122356888888863 34567899999999999997532
Q ss_pred ----heeehhhc------CCCccchhhhhHhhhccccEEEeecCCCceEEEEeccCCCccccccccceeeeccCcEEEEE
Q 000722 201 ----WKLVRRYT------GGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVE 270 (1331)
Q Consensus 201 ----~~~v~~~~------~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrVWDl~tg~~~~~~~~~~~l~gH~~~V~sva 270 (1331)
.+.+..+. .+..+.-.-+.| ....|.++++ |.-..|+|||.........+ ..+.+..|+++.
T Consensus 1144 ~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dW--qQ~~G~Ll~t-Gd~r~IRIWDa~~E~~~~di-----P~~s~t~vTaLS 1215 (1387)
T KOG1517|consen 1144 KWKKPELVTAWSSLSDQLPGARGTGLVVDW--QQQSGHLLVT-GDVRSIRIWDAHKEQVVADI-----PYGSSTLVTALS 1215 (1387)
T ss_pred ccCCceeEEeeccccccCccCCCCCeeeeh--hhhCCeEEec-CCeeEEEEEecccceeEeec-----ccCCCccceeec
Confidence 12222211 111111122334 3445555555 45889999999987765542 234566788887
Q ss_pred echhccCCCcEEEeecCceeEeeeccchhhhcccCCCCcccccccc--cccCCCCCCC--ceeeeeecce--eeeeecCc
Q 000722 271 LSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVA--SWCHPRAPNL--DILTCVKDSH--IWAIEHPT 344 (1331)
Q Consensus 271 fsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~--V~svafspdg--~lLa~s~Dg~--IWdl~~~~ 344 (1331)
-+.. .+..|+.|..||.||+||.+.-..- ..+...+.|+.. |..+.+-++| .+++++.||. +||++...
T Consensus 1216 ~~~~--~gn~i~AGfaDGsvRvyD~R~a~~d---s~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~ 1290 (1387)
T KOG1517|consen 1216 ADLV--HGNIIAAGFADGSVRVYDRRMAPPD---SLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSS 1290 (1387)
T ss_pred cccc--CCceEEEeecCCceEEeecccCCcc---ccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCc
Confidence 7663 6799999999999999998754321 112224566665 7777777754 4889999996 79998631
Q ss_pred cccccccccccccCCCcccccccc--ceEEEEEEeccCCccEeeecceeEEEEeecCCCC
Q 000722 345 YSALTRPLCELSSLVPPQVLAHHK--KLRVYCMVAHSLQPHLVATGTNVGVIISEFDPRS 402 (1331)
Q Consensus 345 ~~~l~~~~~~~~~~~~~~~l~~h~--~~~I~~la~sp~~~~lLAtGs~DG~Il~VWDlr~ 402 (1331)
. ....+...|. +...+++..|++ ...+|+|+. +.| +||++..
T Consensus 1291 ~-------------e~~~~iv~~~~yGs~lTal~VH~h-apiiAsGs~-q~i-kIy~~~G 1334 (1387)
T KOG1517|consen 1291 K-------------ETFLTIVAHWEYGSALTALTVHEH-APIIASGSA-QLI-KIYSLSG 1334 (1387)
T ss_pred c-------------cccceeeeccccCccceeeeeccC-CCeeeecCc-ceE-EEEecCh
Confidence 0 0011112222 214899999994 667999999 776 7999753
No 207
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.09 E-value=6.4e-10 Score=129.30 Aligned_cols=228 Identities=18% Similarity=0.239 Sum_probs=151.6
Q ss_pred cCCCCCCCCceEEEEEeecceeEeeeecc--cCCCCCccccccccceeeehhhcccCCCcceEeecCCCceeeeeehhhh
Q 000722 124 ASPPPSTKGRHFLVICCVNKAIFLDLVTM--RGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISW 201 (1331)
Q Consensus 124 ~svafspdg~~lLasgs~d~iIvwDl~t~--~~~~i~~~~~h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~ 201 (1331)
....++-.|+ .|+-.-.+.+++|+++.+ ....+..........+|-+|......+.+--++.|-.-|.|.+.|....
T Consensus 127 ~~~~~~~~gd-~lcFnvg~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~~~ 205 (636)
T KOG2394|consen 127 TNTNQSGKGD-RLCFNVGRELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPINF 205 (636)
T ss_pred eeccccCCCC-EEEEecCCeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecchhh
Confidence 3444555666 555555566777877632 2223333334455667777744334567778889989999999998764
Q ss_pred eeehhhc---CCCccchhhhhHhhhccccEEEeecCCCceEEEEeccCC--------------Cc--------ccccccc
Q 000722 202 KLVRRYT---GGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHG--------------QD--------SRELVPK 256 (1331)
Q Consensus 202 ~~v~~~~---~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrVWDl~tg--------------~~--------~~~~~~~ 256 (1331)
+..+.+. .-....|+|+.| ..-+...|+.+-.+|.+.++|.... .. ...-.|+
T Consensus 206 ~~sklfne~r~i~ktsvT~ikW--vpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv 283 (636)
T KOG2394|consen 206 EVSKLFNEERLINKSSVTCIKW--VPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPV 283 (636)
T ss_pred HHHHhhhhcccccccceEEEEE--EeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCcc
Confidence 3333231 123578999998 4556667788889999999976321 00 0000123
Q ss_pred ceeeeccCcEEEEEechhccCCCcEEEeecCceeEeeeccchhhhcccCCCCcccccccccccCCCCCCCcee-eeeecc
Q 000722 257 LSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDIL-TCVKDS 335 (1331)
Q Consensus 257 ~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg~lL-a~s~Dg 335 (1331)
..+.--.+.|+..+|+| |+.+|++.|.||.+||||+.+.+.+.. +...-+...|++|||||++| +||+|.
T Consensus 284 ~~w~~~~g~in~f~FS~---DG~~LA~VSqDGfLRvF~fdt~eLlg~------mkSYFGGLLCvcWSPDGKyIvtGGEDD 354 (636)
T KOG2394|consen 284 ARWHIGEGSINEFAFSP---DGKYLATVSQDGFLRIFDFDTQELLGV------MKSYFGGLLCVCWSPDGKYIVTGGEDD 354 (636)
T ss_pred ceeEeccccccceeEcC---CCceEEEEecCceEEEeeccHHHHHHH------HHhhccceEEEEEcCCccEEEecCCcc
Confidence 33333456799999999 999999999999999999998877655 44455678899999999977 678887
Q ss_pred --eeeeeecCccccccccccccccCCCccccccccceEEEEEEecc
Q 000722 336 --HIWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHS 379 (1331)
Q Consensus 336 --~IWdl~~~~~~~l~~~~~~~~~~~~~~~l~~h~~~~I~~la~sp 379 (1331)
+||.+..+.. +..-.+|+. .|..++|.|
T Consensus 355 LVtVwSf~erRV---------------VARGqGHkS-WVs~VaFDp 384 (636)
T KOG2394|consen 355 LVTVWSFEERRV---------------VARGQGHKS-WVSVVAFDP 384 (636)
T ss_pred eEEEEEeccceE---------------EEecccccc-ceeeEeecc
Confidence 5899875422 222345555 777777763
No 208
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.08 E-value=7.8e-10 Score=122.08 Aligned_cols=204 Identities=12% Similarity=0.072 Sum_probs=149.3
Q ss_pred cccccCCCCCCCCceEEEEEeeccee-Eeeeeccc-CCCCCccccccccceeeehhhcccCCCcceEeecCCCceeeeee
Q 000722 120 TSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMR-GRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLS 197 (1331)
Q Consensus 120 ~~~V~svafspdg~~lLasgs~d~iI-vwDl~t~~-~~~i~~~~~h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWD 197 (1331)
..+|+|.+|++|+. .++++..+.-+ ++.....+ .+...++..|...|++|+| +|..+.|++|+.|..-++|.
T Consensus 10 ~~pitchAwn~drt-~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdW-----ap~snrIvtcs~drnayVw~ 83 (361)
T KOG1523|consen 10 LEPITCHAWNSDRT-QIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDW-----APKSNRIVTCSHDRNAYVWT 83 (361)
T ss_pred cCceeeeeecCCCc-eEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEee-----cCCCCceeEccCCCCccccc
Confidence 45688999999998 66777666544 66444433 4456678899999999999 77899999999999999999
Q ss_pred hh-h--heeehhhcCCCccchhhhhHhhhccccEEEeecCCCceEEEEeccCCCccccccccceeeeccCcEEEEEechh
Q 000722 198 MI-S--WKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRV 274 (1331)
Q Consensus 198 l~-t--~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~ 274 (1331)
.. . ++..-.+. .|+...+|+.| +|.++.|++||.-+.|.||-++.....+ ..+..-+.+...|++++|||
T Consensus 84 ~~~~~~WkptlvLl-RiNrAAt~V~W---sP~enkFAVgSgar~isVcy~E~ENdWW--VsKhikkPirStv~sldWhp- 156 (361)
T KOG1523|consen 84 QPSGGTWKPTLVLL-RINRAATCVKW---SPKENKFAVGSGARLISVCYYEQENDWW--VSKHIKKPIRSTVTSLDWHP- 156 (361)
T ss_pred cCCCCeeccceeEE-EeccceeeEee---cCcCceEEeccCccEEEEEEEeccccee--hhhhhCCccccceeeeeccC-
Confidence 83 3 34444444 79999999995 8999999999999999999887655432 22222355778899999999
Q ss_pred ccCCCcEEEeecCceeEeeeccchh--------hhcccCC----CCcccccccccccCCCCCCCceee-eeecceee
Q 000722 275 MGGSPQLITIGADKTLAIWDTVSFK--------ELRRIKP----VPKLACHSVASWCHPRAPNLDILT-CVKDSHIW 338 (1331)
Q Consensus 275 ~~dg~~LaSgs~Dg~IrIWDl~t~~--------~l~~~~~----~~~l~~H~~~V~svafspdg~lLa-~s~Dg~IW 338 (1331)
+.-+|+.||.|+.+|||..--.. .+..-.+ ........+.|..+.|+|+|..|+ .+.|..+.
T Consensus 157 --nnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~ 231 (361)
T KOG1523|consen 157 --NNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVS 231 (361)
T ss_pred --CcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceE
Confidence 78899999999999999642110 0000000 001224456788999999998774 67777643
No 209
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.05 E-value=3.4e-09 Score=124.84 Aligned_cols=201 Identities=7% Similarity=0.029 Sum_probs=115.0
Q ss_pred CCCCCCCCceEEEEEeecc-eeEeeeeccc-CC-CCCccccccccceeeehhhcccCCCcceEee-cCCCceeeeeehhh
Q 000722 125 SPPPSTKGRHFLVICCVNK-AIFLDLVTMR-GR-DIPKQELDNKSLVCMEFLSRSAVGDVPLVAF-GSSDGVIRVLSMIS 200 (1331)
Q Consensus 125 svafspdg~~lLasgs~d~-iIvwDl~t~~-~~-~i~~~~~h~~~V~~Vaf~P~s~Spdg~~Las-Gs~DGtIrlWDl~t 200 (1331)
.+.|+|+++.++++...++ +.+|++.+.. .. .+... .+...+.++++ +|+++++++ ...++.|.+||+.+
T Consensus 84 ~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~-~~~~~~~~~~~-----~p~g~~l~v~~~~~~~v~v~d~~~ 157 (330)
T PRK11028 84 HISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQII-EGLEGCHSANI-----DPDNRTLWVPCLKEDRIRLFTLSD 157 (330)
T ss_pred EEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeec-cCCCcccEeEe-----CCCCCEEEEeeCCCCEEEEEEECC
Confidence 4678999985555544344 4588886421 11 11111 12245677888 678888754 45679999999976
Q ss_pred heeehh-----hcCCCccchhhhhHhhhccccEEEeecCC-CceEEEEeccC--CCccccccccceee---eccCcEEEE
Q 000722 201 WKLVRR-----YTGGHKGSISCLMTFMASSGEALLVSGGS-DGLLILWSADH--GQDSRELVPKLSLK---AHDGGVVAV 269 (1331)
Q Consensus 201 ~~~v~~-----~~~gH~~~V~~vawf~~spdg~lLaSgs~-DgtIrVWDl~t--g~~~~~~~~~~~l~---gH~~~V~sv 269 (1331)
...+.. ...........+. ++|++++++++.. +++|.+|++.. ++. ........+. .+......+
T Consensus 158 ~g~l~~~~~~~~~~~~g~~p~~~~---~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~-~~~~~~~~~p~~~~~~~~~~~i 233 (330)
T PRK11028 158 DGHLVAQEPAEVTTVEGAGPRHMV---FHPNQQYAYCVNELNSSVDVWQLKDPHGEI-ECVQTLDMMPADFSDTRWAADI 233 (330)
T ss_pred CCcccccCCCceecCCCCCCceEE---ECCCCCEEEEEecCCCEEEEEEEeCCCCCE-EEEEEEecCCCcCCCCccceeE
Confidence 322211 1101122334454 7899998877765 99999999974 221 1000000011 112234468
Q ss_pred EechhccCCCcEEEee-cCceeEeeeccchhhhcccCCCCcccccccccccCCCCCCCceee-ee-ecce--eeeee
Q 000722 270 ELSRVMGGSPQLITIG-ADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDILT-CV-KDSH--IWAIE 341 (1331)
Q Consensus 270 afsp~~~dg~~LaSgs-~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg~lLa-~s-~Dg~--IWdl~ 341 (1331)
.|+| ++++++++. .++.|.+|++.......++. ..... ....+.+.++|+|++|. +. .+++ +|+++
T Consensus 234 ~~~p---dg~~lyv~~~~~~~I~v~~i~~~~~~~~~~--~~~~~-~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 234 HITP---DGRHLYACDRTASLISVFSVSEDGSVLSFE--GHQPT-ETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred EECC---CCCEEEEecCCCCeEEEEEEeCCCCeEEEe--EEEec-cccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 8999 888888875 47899999986533111110 00111 12445789999999663 33 3554 67765
No 210
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=98.99 E-value=3.5e-09 Score=117.04 Aligned_cols=218 Identities=11% Similarity=0.065 Sum_probs=157.7
Q ss_pred cccceeeehhhcccCCCcceEeecCCCceeeeeehhhh---eeehhhcCCCccchhhhhHhhhccccEEEeecCCCceEE
Q 000722 164 NKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISW---KLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLI 240 (1331)
Q Consensus 164 ~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~---~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIr 240 (1331)
..+|+|.+| ++|...++++.....|.||..... +..+++. .|...|++++| .|..+.|++|+.|..-+
T Consensus 10 ~~pitchAw-----n~drt~iAv~~~~~evhiy~~~~~~~w~~~htls-~Hd~~vtgvdW---ap~snrIvtcs~drnay 80 (361)
T KOG1523|consen 10 LEPITCHAW-----NSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLS-EHDKIVTGVDW---APKSNRIVTCSHDRNAY 80 (361)
T ss_pred cCceeeeee-----cCCCceEEeccCCceEEEEEecCCCCceeceehh-hhCcceeEEee---cCCCCceeEccCCCCcc
Confidence 578999999 789999999999999999988754 5666776 89999999995 78889999999999999
Q ss_pred EEeccCCCccccccccceeeeccCcEEEEEechhccCCCcEEEeecCceeEeeeccchhhhcccCCCCcccccccccccC
Q 000722 241 LWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCH 320 (1331)
Q Consensus 241 VWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~sv 320 (1331)
||....+. +|.+...+..|++.+++|.|+| .++.|++||.-+.|.||-++....+..-+.+ -..+...|.++
T Consensus 81 Vw~~~~~~---~WkptlvLlRiNrAAt~V~WsP---~enkFAVgSgar~isVcy~E~ENdWWVsKhi--kkPirStv~sl 152 (361)
T KOG1523|consen 81 VWTQPSGG---TWKPTLVLLRINRAATCVKWSP---KENKFAVGSGARLISVCYYEQENDWWVSKHI--KKPIRSTVTSL 152 (361)
T ss_pred ccccCCCC---eeccceeEEEeccceeeEeecC---cCceEEeccCccEEEEEEEecccceehhhhh--CCccccceeee
Confidence 99984432 2667778889999999999999 8899999999999999988765543221111 23456788999
Q ss_pred CCCCCCcee-eeeecce--eeeeecCcc-cccccccccccc--CCCccccccccceEEEEEEeccCCccEeeecceeEEE
Q 000722 321 PRAPNLDIL-TCVKDSH--IWAIEHPTY-SALTRPLCELSS--LVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVI 394 (1331)
Q Consensus 321 afspdg~lL-a~s~Dg~--IWdl~~~~~-~~l~~~~~~~~~--~~~~~~l~~h~~~~I~~la~sp~~~~lLAtGs~DG~I 394 (1331)
.|+|++-+| +|+.|++ |+..--... .......|+-+. ...+..+....+ .+..+.|+| +++.|+-.+.|+.+
T Consensus 153 dWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~gg-wvh~v~fs~-sG~~lawv~Hds~v 230 (361)
T KOG1523|consen 153 DWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGG-WVHGVLFSP-SGNRLAWVGHDSTV 230 (361)
T ss_pred eccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCC-ceeeeEeCC-CCCEeeEecCCCce
Confidence 999999888 5677875 433221000 001111111110 011223333444 899999999 57778888888887
Q ss_pred EeecCCC
Q 000722 395 ISEFDPR 401 (1331)
Q Consensus 395 l~VWDlr 401 (1331)
.+-|..
T Consensus 231 -~~~da~ 236 (361)
T KOG1523|consen 231 -SFVDAA 236 (361)
T ss_pred -EEeecC
Confidence 566653
No 211
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.98 E-value=1.2e-09 Score=124.76 Aligned_cols=192 Identities=17% Similarity=0.086 Sum_probs=140.9
Q ss_pred cCCCCCCCCceEEEEEeeccee-EeeeecccCCCCCccccccccceeeehhhcccCCCcceEeecCCCceeeeeehhhhe
Q 000722 124 ASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWK 202 (1331)
Q Consensus 124 ~svafspdg~~lLasgs~d~iI-vwDl~t~~~~~i~~~~~h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~~ 202 (1331)
..++|+.+|. .+++++.|+.+ +|++..+. .+.....|...|.++.| +|||++|++-+.| ..+||+.+++.
T Consensus 148 k~vaf~~~gs-~latgg~dg~lRv~~~Ps~~--t~l~e~~~~~eV~DL~F-----S~dgk~lasig~d-~~~VW~~~~g~ 218 (398)
T KOG0771|consen 148 KVVAFNGDGS-KLATGGTDGTLRVWEWPSML--TILEEIAHHAEVKDLDF-----SPDGKFLASIGAD-SARVWSVNTGA 218 (398)
T ss_pred eEEEEcCCCC-EeeeccccceEEEEecCcch--hhhhhHhhcCcccccee-----CCCCcEEEEecCC-ceEEEEeccCc
Confidence 5688999987 88999888887 67865533 34456788999999999 8899999999999 89999999998
Q ss_pred eehhhcCCCccchhhhhHhhhcccc-----EEEeecCCCceEEEEeccCCCccccccccceeeeccCcEEEEEechhccC
Q 000722 203 LVRRYTGGHKGSISCLMTFMASSGE-----ALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGG 277 (1331)
Q Consensus 203 ~v~~~~~gH~~~V~~vawf~~spdg-----~lLaSgs~DgtIrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~d 277 (1331)
++....+....+....+ .|+.++ .+++....-+.|+.||+...+.- .+-+......-...|++++.+. +
T Consensus 219 ~~a~~t~~~k~~~~~~c--RF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~-~~l~~~~~~~~~~siSsl~VS~---d 292 (398)
T KOG0771|consen 219 ALARKTPFSKDEMFSSC--RFSVDNAQETLRLAASQFPGGGVRLCDISLWSGS-NFLRLRKKIKRFKSISSLAVSD---D 292 (398)
T ss_pred hhhhcCCcccchhhhhc--eecccCCCceEEEEEecCCCCceeEEEeeeeccc-cccchhhhhhccCcceeEEEcC---C
Confidence 77776533344444433 367666 44455556677888877654321 1111111222234699999998 9
Q ss_pred CCcEEEeecCceeEeeeccchhhhcccCCCCcccccccccccCCCCCCCcee-eeeecc
Q 000722 278 SPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDIL-TCVKDS 335 (1331)
Q Consensus 278 g~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg~lL-a~s~Dg 335 (1331)
|++++.|+.||.|-|++..+.++++-. -+.|...|+.+.|+|+.+.+ +.+.|.
T Consensus 293 Gkf~AlGT~dGsVai~~~~~lq~~~~v-----k~aH~~~VT~ltF~Pdsr~~~svSs~~ 346 (398)
T KOG0771|consen 293 GKFLALGTMDGSVAIYDAKSLQRLQYV-----KEAHLGFVTGLTFSPDSRYLASVSSDN 346 (398)
T ss_pred CcEEEEeccCCcEEEEEeceeeeeEee-----hhhheeeeeeEEEcCCcCcccccccCC
Confidence 999999999999999999887776553 36799999999999998765 444444
No 212
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=98.98 E-value=9e-09 Score=115.12 Aligned_cols=192 Identities=15% Similarity=0.148 Sum_probs=123.9
Q ss_pred cccCCCCCCCCceEEEEEeecceeEe-eeecccC-C----------CCCccccccccceeeehhhcccCCCcceEeecC-
Q 000722 122 GFASPPPSTKGRHFLVICCVNKAIFL-DLVTMRG-R----------DIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGS- 188 (1331)
Q Consensus 122 ~V~svafspdg~~lLasgs~d~iIvw-Dl~t~~~-~----------~i~~~~~h~~~V~~Vaf~P~s~Spdg~~LasGs- 188 (1331)
.|.+++|-|.+..-|++|+..++.+| +-.+... + .+....+| .+|+++.| .+||..+++++
T Consensus 142 nvtclawRPlsaselavgCr~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqw-----n~dgt~l~tAS~ 215 (445)
T KOG2139|consen 142 NVTCLAWRPLSASELAVGCRAGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQW-----NEDGTILVTASF 215 (445)
T ss_pred ceeEEEeccCCcceeeeeecceeEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEE-----cCCCCEEeeccc
Confidence 46788888887779999999999999 3222211 1 11112233 68999999 78999999988
Q ss_pred CCceeeeeehhhheeehhhcCCCccchhhhhHhhhccccEEEeecCCCceEEEEeccCC-CccccccccceeeeccCcEE
Q 000722 189 SDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHG-QDSRELVPKLSLKAHDGGVV 267 (1331)
Q Consensus 189 ~DGtIrlWDl~t~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrVWDl~tg-~~~~~~~~~~~l~gH~~~V~ 267 (1331)
.|..|+|||..++.++.... -.-+.+.-+. ++||+++|..+.-|+..++|+.... ...+ ..--.+.|.
T Consensus 216 gsssi~iWdpdtg~~~pL~~-~glgg~slLk---wSPdgd~lfaAt~davfrlw~e~q~wt~er-------w~lgsgrvq 284 (445)
T KOG2139|consen 216 GSSSIMIWDPDTGQKIPLIP-KGLGGFSLLK---WSPDGDVLFAATCDAVFRLWQENQSWTKER-------WILGSGRVQ 284 (445)
T ss_pred CcceEEEEcCCCCCcccccc-cCCCceeeEE---EcCCCCEEEEecccceeeeehhcccceecc-------eeccCCcee
Confidence 56789999999988776553 3445666676 6999999999999999999965432 2111 122234799
Q ss_pred EEEechhccCCCcE-EEeecCceeEeeeccchh----hh-----------cccCCCCcccc---cccccccCCCCCCCce
Q 000722 268 AVELSRVMGGSPQL-ITIGADKTLAIWDTVSFK----EL-----------RRIKPVPKLAC---HSVASWCHPRAPNLDI 328 (1331)
Q Consensus 268 svafsp~~~dg~~L-aSgs~Dg~IrIWDl~t~~----~l-----------~~~~~~~~l~~---H~~~V~svafspdg~l 328 (1331)
..+|+| .|.+| ++++..- ++|.+.-.. .. ..+.......+ -.+...+++|.|.|.+
T Consensus 285 tacWsp---cGsfLLf~~sgsp--~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGey 359 (445)
T KOG2139|consen 285 TACWSP---CGSFLLFACSGSP--RLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEY 359 (445)
T ss_pred eeeecC---CCCEEEEEEcCCc--eEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCE
Confidence 999999 55544 4444333 344332110 00 00000011111 2346678999999998
Q ss_pred eeeeecc
Q 000722 329 LTCVKDS 335 (1331)
Q Consensus 329 La~s~Dg 335 (1331)
|+....+
T Consensus 360 Lav~fKg 366 (445)
T KOG2139|consen 360 LAVIFKG 366 (445)
T ss_pred EEEEEcC
Confidence 8765443
No 213
>PRK01742 tolB translocation protein TolB; Provisional
Probab=98.97 E-value=1.1e-09 Score=133.71 Aligned_cols=233 Identities=14% Similarity=0.063 Sum_probs=141.3
Q ss_pred cchhhHHHHhhhccccccCCcccccccccccCCCCCCCCceEEEEEeec---ceeEeeeecccCCCCCccccccccceee
Q 000722 94 DDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVN---KAIFLDLVTMRGRDIPKQELDNKSLVCM 170 (1331)
Q Consensus 94 DgtIrvWdl~tg~~l~~~~~~~~~~~~~~V~svafspdg~~lLasgs~d---~iIvwDl~t~~~~~i~~~~~h~~~V~~V 170 (1331)
+..|.+||...... .....+ ...+.+..|+|||+.++.+..++ .+.+||+.+++...+..... ...++
T Consensus 183 ~~~i~i~d~dg~~~-----~~lt~~-~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g---~~~~~ 253 (429)
T PRK01742 183 PYEVRVADYDGFNQ-----FIVNRS-SQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRG---HNGAP 253 (429)
T ss_pred eEEEEEECCCCCCc-----eEeccC-CCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCC---ccCce
Confidence 46788888755432 112222 45688899999998444433322 25588988765433333332 33467
Q ss_pred ehhhcccCCCcceEeecC-CCceeeee--ehhhheeehhhcCCCccchhhhhHhhhccccEEEeec-CCCceEEEEeccC
Q 000722 171 EFLSRSAVGDVPLVAFGS-SDGVIRVL--SMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSG-GSDGLLILWSADH 246 (1331)
Q Consensus 171 af~P~s~Spdg~~LasGs-~DGtIrlW--Dl~t~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSg-s~DgtIrVWDl~t 246 (1331)
+| +|||+.|+.++ .+|.+.|| |+.+++. ..+. .|...+.+.. ++|+|+.|+.+ ..+|...||++..
T Consensus 254 ~w-----SPDG~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt-~~~~~~~~~~---wSpDG~~i~f~s~~~g~~~I~~~~~ 323 (429)
T PRK01742 254 AF-----SPDGSRLAFASSKDGVLNIYVMGANGGTP-SQLT-SGAGNNTEPS---WSPDGQSILFTSDRSGSPQVYRMSA 323 (429)
T ss_pred eE-----CCCCCEEEEEEecCCcEEEEEEECCCCCe-Eeec-cCCCCcCCEE---ECCCCCEEEEEECCCCCceEEEEEC
Confidence 88 78999888764 67876665 5555544 3344 5666677776 68999876644 4678899998764
Q ss_pred CCccccccccceeeeccCcEEEEEechhccCCCcEEEeecCceeEeeeccchhhhcccCCCCcccccccccccCCCCCCC
Q 000722 247 GQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNL 326 (1331)
Q Consensus 247 g~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg 326 (1331)
...... ...+.. .+..|+| ++++|+..+.++ +.+||+.+++...... .+ ...+..|+|+|
T Consensus 324 ~~~~~~------~l~~~~--~~~~~Sp---DG~~ia~~~~~~-i~~~Dl~~g~~~~lt~------~~--~~~~~~~sPdG 383 (429)
T PRK01742 324 SGGGAS------LVGGRG--YSAQISA---DGKTLVMINGDN-VVKQDLTSGSTEVLSS------TF--LDESPSISPNG 383 (429)
T ss_pred CCCCeE------EecCCC--CCccCCC---CCCEEEEEcCCC-EEEEECCCCCeEEecC------CC--CCCCceECCCC
Confidence 322111 112333 4578999 888888887765 4559998876432111 11 12467899999
Q ss_pred cee-eeeecce--eeeeecCccccccccccccccCCCccccccccceEEEEEEecc
Q 000722 327 DIL-TCVKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHS 379 (1331)
Q Consensus 327 ~lL-a~s~Dg~--IWdl~~~~~~~l~~~~~~~~~~~~~~~l~~h~~~~I~~la~sp 379 (1331)
++| .++.++. +|.+.... ......+..+.. .++..+|||
T Consensus 384 ~~i~~~s~~g~~~~l~~~~~~-------------G~~~~~l~~~~g-~~~~p~wsp 425 (429)
T PRK01742 384 IMIIYSSTQGLGKVLQLVSAD-------------GRFKARLPGSDG-QVKFPAWSP 425 (429)
T ss_pred CEEEEEEcCCCceEEEEEECC-------------CCceEEccCCCC-CCCCcccCC
Confidence 966 4555553 66654211 122334445554 677888888
No 214
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=98.97 E-value=7.9e-09 Score=121.11 Aligned_cols=271 Identities=15% Similarity=0.194 Sum_probs=171.6
Q ss_pred cCCCcEEEEEeecCCcee-EeecCCCceeeeccccceEEeeeccCC-cccch--hhhhhhhhhcccccccCCCCcccccC
Q 000722 9 PTNDKIVKIQLHPTHPWL-VTADASDHVSVWNWEHRQVIYELKAGG-VDQRR--LVGAKLEKLAEGELEHKGKPTEAMRG 84 (1331)
Q Consensus 9 gHs~~V~~lafSPdg~~L-aSgs~DGtV~VWD~~tg~~i~s~~~~~-~~~i~--~vspdg~~Lasgs~d~~g~~l~~l~g 84 (1331)
+|...-+.|..+|||+|+ +||..--.|++||+..-.+. |..|- .+.+. .++.+...+++-.
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLK--FERhlDae~V~feiLsDD~SK~v~L~------------- 113 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLK--FERHLDAEVVDFEILSDDYSKSVFLQ------------- 113 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceee--eeecccccceeEEEeccchhhheEee-------------
Confidence 577888999999999965 56667789999998753332 22110 01111 0001111111111
Q ss_pred CceeEEeeecchhhHHHHhhhccccccCCcccccccccccCCCCCCCCceEEEEEeecceeEeeeecccCCCCCcccccc
Q 000722 85 GSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFLDLVTMRGRDIPKQELDN 164 (1331)
Q Consensus 85 g~V~sVaf~DgtIrvWdl~tg~~l~~~~~~~~~~~~~~V~svafspdg~~lLasgs~d~iIvwDl~t~~~~~i~~~~~h~ 164 (1331)
.|.+|-+-.-. |.. ........-++++++.-..-++++|+...++++++..|+. +..+....
T Consensus 114 --------~DR~IefHak~-G~h-------y~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrf--L~P~~~~~ 175 (703)
T KOG2321|consen 114 --------NDRTIEFHAKY-GRH-------YRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRF--LNPFETDS 175 (703)
T ss_pred --------cCceeeehhhc-Cee-------eeeecCcCCccccccCCCccEEEeecCcceEEEEcccccc--cccccccc
Confidence 23333221100 000 0000012234455554333388888888899999998764 44566667
Q ss_pred ccceeeehhhcccCCCcceEeecCCCceeeeeehhhheeehhhc-----CCCcc-----chhhhhHhhhccccEEEeecC
Q 000722 165 KSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYT-----GGHKG-----SISCLMTFMASSGEALLVSGG 234 (1331)
Q Consensus 165 ~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~~~v~~~~-----~gH~~-----~V~~vawf~~spdg~lLaSgs 234 (1331)
..+++|.. ++...+|++|+.||.|..||.++...+.++. ..|.+ .|+++. |+.+|-.++.|.
T Consensus 176 ~~lN~v~i-----n~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~---F~d~gL~~aVGt 247 (703)
T KOG2321|consen 176 GELNVVSI-----NEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALK---FRDDGLHVAVGT 247 (703)
T ss_pred ccceeeee-----cCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEE---ecCCceeEEeec
Confidence 89999999 5677899999999999999999765554442 12333 388887 788899999999
Q ss_pred CCceEEEEeccCCCccccccccceeeec--cCcEEEEEechhccCCCcEEEeecCceeEeeeccchhhhcccCCCCcccc
Q 000722 235 SDGLLILWSADHGQDSRELVPKLSLKAH--DGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLAC 312 (1331)
Q Consensus 235 ~DgtIrVWDl~tg~~~~~~~~~~~l~gH--~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~ 312 (1331)
.+|.|.|||+++.+.+. ...| .-+|..+.|.+. +++..++ ..+...++|||-.+|+....+.+.
T Consensus 248 s~G~v~iyDLRa~~pl~-------~kdh~~e~pi~~l~~~~~-~~q~~v~-S~Dk~~~kiWd~~~Gk~~asiEpt----- 313 (703)
T KOG2321|consen 248 STGSVLIYDLRASKPLL-------VKDHGYELPIKKLDWQDT-DQQNKVV-SMDKRILKIWDECTGKPMASIEPT----- 313 (703)
T ss_pred cCCcEEEEEcccCCcee-------ecccCCccceeeeccccc-CCCceEE-ecchHHhhhcccccCCceeecccc-----
Confidence 99999999999887543 2344 456889999873 2234444 456788999999999987665432
Q ss_pred cccccccCCCCCCCcee-eeeecce
Q 000722 313 HSVASWCHPRAPNLDIL-TCVKDSH 336 (1331)
Q Consensus 313 H~~~V~svafspdg~lL-a~s~Dg~ 336 (1331)
..+..+++-|++-++ ++-+++.
T Consensus 314 --~~lND~C~~p~sGm~f~Ane~~~ 336 (703)
T KOG2321|consen 314 --SDLNDFCFVPGSGMFFTANESSK 336 (703)
T ss_pred --CCcCceeeecCCceEEEecCCCc
Confidence 235677777875544 5544443
No 215
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.95 E-value=5.3e-09 Score=117.60 Aligned_cols=235 Identities=12% Similarity=0.144 Sum_probs=160.7
Q ss_pred ccCCCCCCCCceEEEEEeecceeEeeeecccCCCCCccccccccceeeehhhcccCCCcceEeecCCC--ceeeeeehhh
Q 000722 123 FASPPPSTKGRHFLVICCVNKAIFLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSD--GVIRVLSMIS 200 (1331)
Q Consensus 123 V~svafspdg~~lLasgs~d~iIvwDl~t~~~~~i~~~~~h~~~V~~Vaf~P~s~Spdg~~LasGs~D--GtIrlWDl~t 200 (1331)
+..+.|..+.. +|..|+.++.-++....... .......+..|-.+-| ...+++..+.+ ..+++++.+.
T Consensus 8 i~~~~~Nqd~~-~lsvGs~~Gyk~~~~~~~~k--~~~~~~~~~~IvEmLF-------SSSLvaiV~~~qpr~Lkv~~~Kk 77 (391)
T KOG2110|consen 8 INFIGFNQDST-LLSVGSKDGYKIFSCSPFEK--CFSKDTEGVSIVEMLF-------SSSLVAIVSIKQPRKLKVVHFKK 77 (391)
T ss_pred eeeeeecccee-EEEccCCCceeEEecCchHH--hhcccCCCeEEEEeec-------ccceeEEEecCCCceEEEEEccc
Confidence 34455888876 89999999988875554221 1122233456667777 34566555544 4589999888
Q ss_pred heeehhhcCCCccchhhhhHhhhccccEEEeecCCCceEEEEeccCCCccccccccceeeeccCcEEEEEechhccCCCc
Q 000722 201 WKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQ 280 (1331)
Q Consensus 201 ~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~ 280 (1331)
+..+..+. ....|.++. . +.+.|+.+-.+ .|.|||+++-+.++++ .+...|..++..+.+++ .+.+
T Consensus 78 ~~~ICe~~--fpt~IL~Vr---m--Nr~RLvV~Lee-~IyIydI~~MklLhTI---~t~~~n~~gl~AlS~n~---~n~y 143 (391)
T KOG2110|consen 78 KTTICEIF--FPTSILAVR---M--NRKRLVVCLEE-SIYIYDIKDMKLLHTI---ETTPPNPKGLCALSPNN---ANCY 143 (391)
T ss_pred CceEEEEe--cCCceEEEE---E--ccceEEEEEcc-cEEEEecccceeehhh---hccCCCccceEeeccCC---CCce
Confidence 77777664 556777776 2 34456555444 4999999998877653 22345666787777776 5667
Q ss_pred EEEee--cCceeEeeeccchhhhcccCCCCcccccccccccCCCCCCCcee-eeeecce---eeeeecCccccccccccc
Q 000722 281 LITIG--ADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDIL-TCVKDSH---IWAIEHPTYSALTRPLCE 354 (1331)
Q Consensus 281 LaSgs--~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg~lL-a~s~Dg~---IWdl~~~~~~~l~~~~~~ 354 (1331)
++--+ ..|.|.+||..+.+.+.. +..|.+.+-+++|+++|.+| ++++.|+ |+.+..+..
T Consensus 144 lAyp~s~t~GdV~l~d~~nl~~v~~------I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~k--------- 208 (391)
T KOG2110|consen 144 LAYPGSTTSGDVVLFDTINLQPVNT------INAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQK--------- 208 (391)
T ss_pred EEecCCCCCceEEEEEcccceeeeE------EEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccE---------
Confidence 77433 478999999988776655 78999999999999999988 4666776 566654321
Q ss_pred cccCCCccccccc-cceEEEEEEeccCCccEeeecceeEEEEeecCCCCCC
Q 000722 355 LSSLVPPQVLAHH-KKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPRSLP 404 (1331)
Q Consensus 355 ~~~~~~~~~l~~h-~~~~I~~la~sp~~~~lLAtGs~DG~Il~VWDlr~~p 404 (1331)
+..|+.. .-..|++++|||+ ..+|++.++.++| ++|.+.+..
T Consensus 209 ------l~eFRRG~~~~~IySL~Fs~d-s~~L~~sS~TeTV-HiFKL~~~~ 251 (391)
T KOG2110|consen 209 ------LYEFRRGTYPVSIYSLSFSPD-SQFLAASSNTETV-HIFKLEKVS 251 (391)
T ss_pred ------eeeeeCCceeeEEEEEEECCC-CCeEEEecCCCeE-EEEEecccc
Confidence 2223222 2237999999995 6678888889998 899987644
No 216
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=98.94 E-value=3.5e-09 Score=122.22 Aligned_cols=270 Identities=14% Similarity=0.201 Sum_probs=180.5
Q ss_pred cccccccCCCCCCCCceEEEEEeeccee-EeeeecccCCCCCccccccccceeeehhhcccCCCcceEeecCCCceeeee
Q 000722 118 NVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVL 196 (1331)
Q Consensus 118 ~~~~~V~svafspdg~~lLasgs~d~iI-vwDl~t~~~~~i~~~~~h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlW 196 (1331)
.|.+.|..+.|...|. ++++|++|..+ +||+...+. .+....+|...|..-.|.|. .+...+++++.||.|++=
T Consensus 140 ~H~GcVntV~FN~~Gd-~l~SgSDD~~vv~WdW~~~~~-~l~f~SGH~~NvfQaKFiP~---s~d~ti~~~s~dgqvr~s 214 (559)
T KOG1334|consen 140 KHKGCVNTVHFNQRGD-VLASGSDDLQVVVWDWVSGSP-KLSFESGHCNNVFQAKFIPF---SGDRTIVTSSRDGQVRVS 214 (559)
T ss_pred CCCCccceeeecccCc-eeeccCccceEEeehhhccCc-ccccccccccchhhhhccCC---CCCcCceeccccCceeee
Confidence 3478899999999998 99999999876 899987653 33445788888888889884 456679999999999987
Q ss_pred ehhh-heeeh-hhcCCCccchhhhhHhhhccccEEEeecCCCceEEEEeccCCCccccccccceeeeccC---cEEEEEe
Q 000722 197 SMIS-WKLVR-RYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDG---GVVAVEL 271 (1331)
Q Consensus 197 Dl~t-~~~v~-~~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrVWDl~tg~~~~~~~~~~~l~gH~~---~V~svaf 271 (1331)
.+.. +.+.. .....|.+.|.-++. .+-....|.|++.|+.+.-+|++.+.....+. .-..+.. ..+.++.
T Consensus 215 ~i~~t~~~e~t~rl~~h~g~vhklav--~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~---cr~~~~~~~v~L~~Ia~ 289 (559)
T KOG1334|consen 215 EILETGYVENTKRLAPHEGPVHKLAV--EPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFV---CREADEKERVGLYTIAV 289 (559)
T ss_pred eeccccceecceecccccCccceeee--cCCCCCcccccccccceeeeeeccCCccceee---eeccCCccceeeeeEec
Confidence 7653 32221 122368999988872 23334579999999999999998876433321 1122333 5678999
Q ss_pred chhccCCCcEEEeecCceeEeeeccchhh------hcccCCCCcccccccccccCCCCCCC-ceeeeeecceeeeeecCc
Q 000722 272 SRVMGGSPQLITIGADKTLAIWDTVSFKE------LRRIKPVPKLACHSVASWCHPRAPNL-DILTCVKDSHIWAIEHPT 344 (1331)
Q Consensus 272 sp~~~dg~~LaSgs~Dg~IrIWDl~t~~~------l~~~~~~~~l~~H~~~V~svafspdg-~lLa~s~Dg~IWdl~~~~ 344 (1331)
+| .+...+++|+.|-.+++||.+.-.. +.++.+..-.......|++++|+.++ .+|+.-.|-.||-++. .
T Consensus 290 ~P--~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~-~ 366 (559)
T KOG1334|consen 290 DP--RNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNK-S 366 (559)
T ss_pred CC--CCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEecc-c
Confidence 98 3666999999999999999875432 23333333233334578899999664 5777766766554432 1
Q ss_pred cccccccc--cccccCCCccccccccc-eEEEEEEeccCCccEeeecceeEEEEeecCCCC
Q 000722 345 YSALTRPL--CELSSLVPPQVLAHHKK-LRVYCMVAHSLQPHLVATGTNVGVIISEFDPRS 402 (1331)
Q Consensus 345 ~~~l~~~~--~~~~~~~~~~~l~~h~~-~~I~~la~sp~~~~lLAtGs~DG~Il~VWDlr~ 402 (1331)
......+. ....... ...+++|.. ..|.++-|---...++++|++-|.| .+|+-..
T Consensus 367 ~~~G~~p~~~s~~~~~~-k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhI-FiW~K~t 425 (559)
T KOG1334|consen 367 MGDGSEPDPSSPREQYV-KRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHI-FIWDKKT 425 (559)
T ss_pred cccCCCCCCCcchhhcc-chhhcccccccccceeeeccCccceEEecCccceE-EEEecch
Confidence 21111110 0000111 123566654 2577777653367789999999999 7999553
No 217
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=98.94 E-value=2.1e-09 Score=133.80 Aligned_cols=192 Identities=18% Similarity=0.299 Sum_probs=150.8
Q ss_pred CCcceEeecCCCceeeeeehhhheeehhhcCCCccchhhhhHhhhccccEEEeecCCCceEEEEeccCCCccccccccce
Q 000722 179 GDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLS 258 (1331)
Q Consensus 179 pdg~~LasGs~DGtIrlWDl~t~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrVWDl~tg~~~~~~~~~~~ 258 (1331)
-+...++.++.+..+.+||...+.....+.........++..+.++++.-++++|+.-+.|.+|+..... .+. .
T Consensus 97 ~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn-----~p~-~ 170 (967)
T KOG0974|consen 97 EENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDN-----KPI-R 170 (967)
T ss_pred hhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccC-----Ccc-e
Confidence 3677889999999999999988777666541211111111112367888899999999999999987322 122 4
Q ss_pred eeeccCcEEEEEechhccCCCcEEEeecCceeEeeeccchhhhcccCCCCcccccccccccCCCCCCCceeeeeecce--
Q 000722 259 LKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDILTCVKDSH-- 336 (1331)
Q Consensus 259 l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg~lLa~s~Dg~-- 336 (1331)
+.||++.+.++.|+- ++.++++.|+|+++|+|++.+.+... ...-+|+..||.+.|+|+ .++++++|.+
T Consensus 171 l~GHeG~iF~i~~s~---dg~~i~s~SdDRsiRlW~i~s~~~~~-----~~~fgHsaRvw~~~~~~n-~i~t~gedctcr 241 (967)
T KOG0974|consen 171 LKGHEGSIFSIVTSL---DGRYIASVSDDRSIRLWPIDSREVLG-----CTGFGHSARVWACCFLPN-RIITVGEDCTCR 241 (967)
T ss_pred ecccCCceEEEEEcc---CCcEEEEEecCcceeeeecccccccC-----cccccccceeEEEEeccc-eeEEeccceEEE
Confidence 789999999999997 89999999999999999999887654 236799999999999999 7889999986
Q ss_pred eeeeecCccccccccccccccCCCccccccccceEEEEEEeccCCccEeeecceeEEEEeecCCCCC
Q 000722 337 IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPRSL 403 (1331)
Q Consensus 337 IWdl~~~~~~~l~~~~~~~~~~~~~~~l~~h~~~~I~~la~sp~~~~lLAtGs~DG~Il~VWDlr~~ 403 (1331)
+|+.+.. .+.++..|....||.++.++ +...++|+++||.+ ++||+..+
T Consensus 242 vW~~~~~----------------~l~~y~~h~g~~iw~~~~~~-~~~~~vT~g~Ds~l-k~~~l~~r 290 (967)
T KOG0974|consen 242 VWGVNGT----------------QLEVYDEHSGKGIWKIAVPI-GVIIKVTGGNDSTL-KLWDLNGR 290 (967)
T ss_pred EEecccc----------------eehhhhhhhhcceeEEEEcC-CceEEEeeccCcch-hhhhhhcc
Confidence 8976532 12356677766899999999 67789999999998 99998643
No 218
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.93 E-value=1.6e-09 Score=139.34 Aligned_cols=198 Identities=19% Similarity=0.345 Sum_probs=152.5
Q ss_pred cccCCCcEEEEEeecCCceeEeecCCCceeeeccccceEEeeeccCCcccchhhhhhhhhhcccccccCCCCcccccCCc
Q 000722 7 FRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRGGS 86 (1331)
Q Consensus 7 L~gHs~~V~~lafSPdg~~LaSgs~DGtV~VWD~~tg~~i~s~~~~~~~~i~~vspdg~~Lasgs~d~~g~~l~~l~gg~ 86 (1331)
++.|-..|.++.=||..++-+||+.||.|++|.+..++.+..+...+
T Consensus 2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g--------------------------------- 2250 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAG--------------------------------- 2250 (2439)
T ss_pred eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccC---------------------------------
Confidence 34466789999999999999999999999999998877777666321
Q ss_pred eeEEeeecchhhHHHHhhhccccccCCcccccccccccCCCCCCCCceEEEEEeecceeEeeeecccCCCCCcccccccc
Q 000722 87 VKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFLDLVTMRGRDIPKQELDNKS 166 (1331)
Q Consensus 87 V~sVaf~DgtIrvWdl~tg~~l~~~~~~~~~~~~~~V~svafspdg~~lLasgs~d~iIvwDl~t~~~~~i~~~~~h~~~ 166 (1331)
...|+.+.|+.+|+.+-++.+++.+-.|... .+.....+.|+..
T Consensus 2251 ---------------------------------~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~---pk~~~s~qchnk~ 2294 (2439)
T KOG1064|consen 2251 ---------------------------------NSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS---PKPYTSWQCHNKA 2294 (2439)
T ss_pred ---------------------------------cchhhhhhhcccCCceeeeccCCceeecccC---CcceeccccCCcc
Confidence 1235567788888866666666666688655 2345567888888
Q ss_pred ceeeehhhcccCCCcceEeecC---CCceeeeeehhhh---eeehhhcCCCccchhhhhHhhhccccEEEeecCCCceEE
Q 000722 167 LVCMEFLSRSAVGDVPLVAFGS---SDGVIRVLSMISW---KLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLI 240 (1331)
Q Consensus 167 V~~Vaf~P~s~Spdg~~LasGs---~DGtIrlWDl~t~---~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIr 240 (1331)
...+.|. +..+++++ +++.+.+||.--. .++. ..|.+.++|++ +-|...+|+|||.+|.|+
T Consensus 2295 ~~Df~Fi-------~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~---~~H~~gaT~l~---~~P~~qllisggr~G~v~ 2361 (2439)
T KOG1064|consen 2295 LSDFRFI-------GSLLATAGRSSDNRNVCLWDTLLPPMNSLVH---TCHDGGATVLA---YAPKHQLLISGGRKGEVC 2361 (2439)
T ss_pred ccceeee-------ehhhhccccCCCCCcccchhcccCcccceee---eecCCCceEEE---EcCcceEEEecCCcCcEE
Confidence 8999994 46677664 6789999997532 2333 38999999998 789999999999999999
Q ss_pred EEeccCCCccccccccceeeeccCcEEEEEechhccCCCcEEEeecCceeEeeeccchhhhcccC
Q 000722 241 LWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIK 305 (1331)
Q Consensus 241 VWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~ 305 (1331)
+||++..+..+.+ +. ++ ...++++|+..|.++||++.....++++.
T Consensus 2362 l~D~rqrql~h~~------~~---------~~----~~~~f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2362 LFDIRQRQLRHTF------QA---------LD----TREYFVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred EeehHHHHHHHHh------hh---------hh----hhheeeccCcccceEEEEccccchhhcCc
Confidence 9999988765442 21 22 35799999999999999999887777753
No 219
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.93 E-value=2.5e-08 Score=112.29 Aligned_cols=159 Identities=18% Similarity=0.251 Sum_probs=119.1
Q ss_pred cccCCCCCCCCceEEEEEeecceeEeeeecccCCC-CCccccccccceeeehhhcccCCCcceEeecC--CCceeeeeeh
Q 000722 122 GFASPPPSTKGRHFLVICCVNKAIFLDLVTMRGRD-IPKQELDNKSLVCMEFLSRSAVGDVPLVAFGS--SDGVIRVLSM 198 (1331)
Q Consensus 122 ~V~svafspdg~~lLasgs~d~iIvwDl~t~~~~~-i~~~~~h~~~V~~Vaf~P~s~Spdg~~LasGs--~DGtIrlWDl 198 (1331)
.|.++.++. + .|+++-.+.++++|+++++... +.....+...+..+.+ ++.+.+++.-+ ..|.|.|||.
T Consensus 89 ~IL~VrmNr--~-RLvV~Lee~IyIydI~~MklLhTI~t~~~n~~gl~AlS~-----n~~n~ylAyp~s~t~GdV~l~d~ 160 (391)
T KOG2110|consen 89 SILAVRMNR--K-RLVVCLEESIYIYDIKDMKLLHTIETTPPNPKGLCALSP-----NNANCYLAYPGSTTSGDVVLFDT 160 (391)
T ss_pred ceEEEEEcc--c-eEEEEEcccEEEEecccceeehhhhccCCCccceEeecc-----CCCCceEEecCCCCCceEEEEEc
Confidence 344555543 3 5677777778899999876422 1111223344555555 55667777543 5689999999
Q ss_pred hhheeehhhcCCCccchhhhhHhhhccccEEEeecCCCce-EEEEeccCCCccccccccceeeeccCcEEEEEechhccC
Q 000722 199 ISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGL-LILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGG 277 (1331)
Q Consensus 199 ~t~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~Dgt-IrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~d 277 (1331)
.+-+.+..+. .|.+.+-|++ |+++|.+|+|+|..|+ |||+.+.+|+.+.++..-.. ...|.+++|+| +
T Consensus 161 ~nl~~v~~I~-aH~~~lAala---fs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~----~~~IySL~Fs~---d 229 (391)
T KOG2110|consen 161 INLQPVNTIN-AHKGPLAALA---FSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTY----PVSIYSLSFSP---D 229 (391)
T ss_pred ccceeeeEEE-ecCCceeEEE---ECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCce----eeEEEEEEECC---C
Confidence 9999998887 9999999998 8999999999999998 68999999988766422111 23488999999 8
Q ss_pred CCcEEEeecCceeEeeeccchh
Q 000722 278 SPQLITIGADKTLAIWDTVSFK 299 (1331)
Q Consensus 278 g~~LaSgs~Dg~IrIWDl~t~~ 299 (1331)
+++|.+.|..++|+||.+..-.
T Consensus 230 s~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 230 SQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred CCeEEEecCCCeEEEEEecccc
Confidence 9999999999999999987544
No 220
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=98.91 E-value=2.1e-09 Score=124.59 Aligned_cols=187 Identities=9% Similarity=0.051 Sum_probs=133.7
Q ss_pred cccccCCCcEEEEEeecCCceeEeecCCCceeeeccccceEEeeeccCCcccchhhhhhhhhhcccccccCCCCcccccC
Q 000722 5 KAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRG 84 (1331)
Q Consensus 5 ~~L~gHs~~V~~lafSPdg~~LaSgs~DGtV~VWD~~tg~~i~s~~~~~~~~i~~vspdg~~Lasgs~d~~g~~l~~l~g 84 (1331)
+....|.+.|.|-.|+|||.-|+|++.||.|++|.- +|-+..++.
T Consensus 98 ~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSr-sGMLRStl~---------------------------------- 142 (737)
T KOG1524|consen 98 RSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSR-SGMLRSTVV---------------------------------- 142 (737)
T ss_pred hhhhhhhhhhhhcccCCCCceeeeecCCceEEEEec-cchHHHHHh----------------------------------
Confidence 345789999999999999999999999999999983 222111110
Q ss_pred CceeEEeeecchhhHHHHhhhccccccCCcccccccccccCCCCCCCCceEEEEEeecceeEeeeecccCCCCCcccccc
Q 000722 85 GSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFLDLVTMRGRDIPKQELDN 164 (1331)
Q Consensus 85 g~V~sVaf~DgtIrvWdl~tg~~l~~~~~~~~~~~~~~V~svafspdg~~lLasgs~d~iIvwDl~t~~~~~i~~~~~h~ 164 (1331)
+....|+|++|.|+...++.+.++ .+++=-+.. ...+...+.|+
T Consensus 143 ---------------------------------Q~~~~v~c~~W~p~S~~vl~c~g~-h~~IKpL~~--n~k~i~WkAHD 186 (737)
T KOG1524|consen 143 ---------------------------------QNEESIRCARWAPNSNSIVFCQGG-HISIKPLAA--NSKIIRWRAHD 186 (737)
T ss_pred ---------------------------------hcCceeEEEEECCCCCceEEecCC-eEEEeeccc--ccceeEEeccC
Confidence 113457778888988755555443 333222221 11344578999
Q ss_pred ccceeeehhhcccCCCcceEeecCCCceeeeeehhhheeehhhcCCCccchhhhhHhhhccccEEEeecCCCceEEEEec
Q 000722 165 KSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSA 244 (1331)
Q Consensus 165 ~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrVWDl 244 (1331)
+-|.|+.| ++..+++++|+.|-..+|||-. |+.+..-. .|..+|++++ +.|+ ..++.+|. ++.|+=
T Consensus 187 GiiL~~~W-----~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~-~~ey~ITSva---~npd-~~~~v~S~-nt~R~~-- 252 (737)
T KOG1524|consen 187 GLVLSLSW-----STQSNIIASGGEDFRFKIWDAQ-GANLFTSA-AEEYAITSVA---FNPE-KDYLLWSY-NTARFS-- 252 (737)
T ss_pred cEEEEeec-----CccccceeecCCceeEEeeccc-CcccccCC-hhccceeeee---eccc-cceeeeee-eeeeec--
Confidence 99999999 6789999999999999999976 45554444 7999999998 5777 55655543 234321
Q ss_pred cCCCccccccccceeeeccCcEEEEEechhccCCCcEEEeecCceeEeee
Q 000722 245 DHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWD 294 (1331)
Q Consensus 245 ~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWD 294 (1331)
+...+.|..++|++ ||..++.|+..|.+.+=.
T Consensus 253 ---------------~p~~GSifnlsWS~---DGTQ~a~gt~~G~v~~A~ 284 (737)
T KOG1524|consen 253 ---------------SPRVGSIFNLSWSA---DGTQATCGTSTGQLIVAY 284 (737)
T ss_pred ---------------CCCccceEEEEEcC---CCceeeccccCceEEEee
Confidence 22345689999999 999999999999876543
No 221
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.90 E-value=3.4e-08 Score=124.28 Aligned_cols=262 Identities=16% Similarity=0.189 Sum_probs=156.0
Q ss_pred cccccCCCCCCCCceEEEEEeeccee-EeeeecccCC-----CCCccccccccceeeehhhcccCCCcceEeecCCCcee
Q 000722 120 TSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGR-----DIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVI 193 (1331)
Q Consensus 120 ~~~V~svafspdg~~lLasgs~d~iI-vwDl~t~~~~-----~i~~~~~h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtI 193 (1331)
...+..++.++....+|++|++|+++ +||.+..... ...+....+..+.++.+ .+.++.+|+++.||.|
T Consensus 1048 s~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~-----~~~~~~~Av~t~DG~v 1122 (1431)
T KOG1240|consen 1048 SSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTM-----CGNGDQFAVSTKDGSV 1122 (1431)
T ss_pred cccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEe-----ccCCCeEEEEcCCCeE
Confidence 44555666666553499999999999 8987653322 12222334678888888 4579999999999999
Q ss_pred eeeehhhh-------eeehhhcCCCccchhhhhHhhhccccEEEeecCCCceEEEEeccCCCccccccccceeeeccCcE
Q 000722 194 RVLSMISW-------KLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGV 266 (1331)
Q Consensus 194 rlWDl~t~-------~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrVWDl~tg~~~~~~~~~~~l~gH~~~V 266 (1331)
++.++... .+.+.......+.+.++..|.+......++.+..-+.|..||.++....+.. . .....+.|
T Consensus 1123 ~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~l--k--~~~~hG~v 1198 (1431)
T KOG1240|consen 1123 RVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRL--K--NQLRHGLV 1198 (1431)
T ss_pred EEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhh--h--cCccccce
Confidence 99988641 1222222122334444433322222347788888899999999987655432 1 23334679
Q ss_pred EEEEechhccCCCcEEEeecCceeEeeeccchhhhcccCCCCcccccccccccCC---CCCCCc-eeeeeecc----eee
Q 000722 267 VAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHP---RAPNLD-ILTCVKDS----HIW 338 (1331)
Q Consensus 267 ~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~sva---fspdg~-lLa~s~Dg----~IW 338 (1331)
++++.+| .+.++++|+..|.+.+||++=+.++..+.. .+...+..+. +.+... .++++..+ .+|
T Consensus 1199 TSi~idp---~~~WlviGts~G~l~lWDLRF~~~i~sw~~-----P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~w 1270 (1431)
T KOG1240|consen 1199 TSIVIDP---WCNWLVIGTSRGQLVLWDLRFRVPILSWEH-----PARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTW 1270 (1431)
T ss_pred eEEEecC---CceEEEEecCCceEEEEEeecCceeecccC-----cccCCcceEEeeccCCCCceEEEecccCCCceeee
Confidence 9999999 788999999999999999997776665431 2223344333 334333 34444422 379
Q ss_pred eeecCccccccc---cccccccCCCcc-ccccccceEEEEEEeccCCccEeeecceeEEEEeecCCC
Q 000722 339 AIEHPTYSALTR---PLCELSSLVPPQ-VLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPR 401 (1331)
Q Consensus 339 dl~~~~~~~l~~---~~~~~~~~~~~~-~l~~h~~~~I~~la~sp~~~~lLAtGs~DG~Il~VWDlr 401 (1331)
++.++....... ....+....+.. .-+++.-..+.|....+ .-.+.+|+.|..| |.||..
T Consensus 1271 n~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~--~~~~ltggsd~kI-R~wD~~ 1334 (1431)
T KOG1240|consen 1271 NMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEK--NGFLLTGGSDMKI-RKWDPT 1334 (1431)
T ss_pred ecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccC--CceeeecCCccce-eeccCC
Confidence 988763211100 000011111110 00012221233433333 4458888888887 899975
No 222
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.88 E-value=2.6e-08 Score=110.28 Aligned_cols=245 Identities=16% Similarity=0.222 Sum_probs=152.0
Q ss_pred cEEEEEeecCCceeEeecCCCceeeeccccceEEeeeccCCcccchhhh--hhhhhhcccccccCCCCcccccCCceeEE
Q 000722 13 KIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVG--AKLEKLAEGELEHKGKPTEAMRGGSVKQV 90 (1331)
Q Consensus 13 ~V~~lafSPdg~~LaSgs~DGtV~VWD~~tg~~i~s~~~~~~~~i~~vs--pdg~~Lasgs~d~~g~~l~~l~gg~V~sV 90 (1331)
...+++|+.|..-++.|..+| .+||+.+--+...+-+ ....+...+. -..+.|+. .||.-+ -
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~-~~~~G~~~veMLfR~N~laL-------------VGGg~~-p 70 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQ-FIDGGFKIVEMLFRSNYLAL-------------VGGGSR-P 70 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhc-cccCchhhhhHhhhhceEEE-------------ecCCCC-C
Confidence 456699999999888886665 7899887522211111 1111122221 11111111 111100 1
Q ss_pred eeecchhhHHHHhhhccccccCCcccccccccccCCCCCCCCceEEEEEeecceeEeeeecccCCCCCcc--ccccccce
Q 000722 91 NFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFLDLVTMRGRDIPKQ--ELDNKSLV 168 (1331)
Q Consensus 91 af~DgtIrvWdl~tg~~l~~~~~~~~~~~~~~V~svafspdg~~lLasgs~d~iIvwDl~t~~~~~i~~~--~~h~~~V~ 168 (1331)
.|.-..|-|||=...+++ ..-.....|.++.+.++ .+++.-.+.+.+|...+. .+.+..+ ........
T Consensus 71 ky~pNkviIWDD~k~~~i------~el~f~~~I~~V~l~r~---riVvvl~~~I~VytF~~n-~k~l~~~et~~NPkGlC 140 (346)
T KOG2111|consen 71 KYPPNKVIIWDDLKERCI------IELSFNSEIKAVKLRRD---RIVVVLENKIYVYTFPDN-PKLLHVIETRSNPKGLC 140 (346)
T ss_pred CCCCceEEEEecccCcEE------EEEEeccceeeEEEcCC---eEEEEecCeEEEEEcCCC-hhheeeeecccCCCceE
Confidence 123566788884444433 22223566788888764 467777788888865521 1111111 11123333
Q ss_pred eeehhhcccCCCcceEee-cCCCceeeeeehhhhee--ehhhcCCCccchhhhhHhhhccccEEEeecCCCce-EEEEec
Q 000722 169 CMEFLSRSAVGDVPLVAF-GSSDGVIRVLSMISWKL--VRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGL-LILWSA 244 (1331)
Q Consensus 169 ~Vaf~P~s~Spdg~~Las-Gs~DGtIrlWDl~t~~~--v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~Dgt-IrVWDl 244 (1331)
++.- +.+..+|+. |-.-|.|+|-|+...+. -..+ .+|...|.|++ .+.+|.+++|+|..|+ |||||.
T Consensus 141 ~~~~-----~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I-~AH~s~Iacv~---Ln~~Gt~vATaStkGTLIRIFdt 211 (346)
T KOG2111|consen 141 SLCP-----TSNKSLLAFPGFKTGQVQIVDLASTKPNAPSII-NAHDSDIACVA---LNLQGTLVATASTKGTLIRIFDT 211 (346)
T ss_pred eecC-----CCCceEEEcCCCccceEEEEEhhhcCcCCceEE-EcccCceeEEE---EcCCccEEEEeccCcEEEEEEEc
Confidence 3333 234455554 44679999999986554 1333 49999999998 8999999999999998 789999
Q ss_pred cCCCccccccccceeeeccCcEEEEEechhccCCCcEEEeecCceeEeeeccchh
Q 000722 245 DHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFK 299 (1331)
Q Consensus 245 ~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~ 299 (1331)
.+|..+.++.. ......|.+++|+| +..+|++.|+.|+|+||.++...
T Consensus 212 ~~g~~l~E~RR----G~d~A~iy~iaFSp---~~s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 212 EDGTLLQELRR----GVDRADIYCIAFSP---NSSWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred CCCcEeeeeec----CCchheEEEEEeCC---CccEEEEEcCCCeEEEEEeecCC
Confidence 99998776311 11224599999999 89999999999999999987533
No 223
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=98.87 E-value=1.3e-08 Score=113.92 Aligned_cols=194 Identities=14% Similarity=0.256 Sum_probs=130.4
Q ss_pred cccccCCCCCCCCceEEEEEeeccee-EeeeecccCCCCCcc-ccccccceeeehhhcccCCCcceEeecCCCceeeeee
Q 000722 120 TSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQ-ELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLS 197 (1331)
Q Consensus 120 ~~~V~svafspdg~~lLasgs~d~iI-vwDl~t~~~~~i~~~-~~h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWD 197 (1331)
...++.++||+.-. .++++..|.++ ++|-.. + +...+ ......|+|++|-|. .+..|+.|+..| |.+|.
T Consensus 98 ~~dlr~~aWhqH~~-~fava~nddvVriy~kss-t--~pt~Lks~sQrnvtclawRPl----saselavgCr~g-IciW~ 168 (445)
T KOG2139|consen 98 EIDLRGVAWHQHII-AFAVATNDDVVRIYDKSS-T--CPTKLKSVSQRNVTCLAWRPL----SASELAVGCRAG-ICIWS 168 (445)
T ss_pred hcceeeEeechhhh-hhhhhccCcEEEEeccCC-C--CCceecchhhcceeEEEeccC----Ccceeeeeecce-eEEEE
Confidence 44567788998654 55666666666 555443 2 22222 223568999999764 345788887766 88997
Q ss_pred hhhh----ee--------ehhhc-CCCccchhhhhHhhhccccEEEeecC-CCceEEEEeccCCCccccccccceeeecc
Q 000722 198 MISW----KL--------VRRYT-GGHKGSISCLMTFMASSGEALLVSGG-SDGLLILWSADHGQDSRELVPKLSLKAHD 263 (1331)
Q Consensus 198 l~t~----~~--------v~~~~-~gH~~~V~~vawf~~spdg~lLaSgs-~DgtIrVWDl~tg~~~~~~~~~~~l~gH~ 263 (1331)
.... +. ...+. .|| .+|++++| .+||..+++++ .|..|+|||..++..+.- . .-.-
T Consensus 169 ~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqw---n~dgt~l~tAS~gsssi~iWdpdtg~~~pL----~--~~gl 238 (445)
T KOG2139|consen 169 DSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQW---NEDGTILVTASFGSSSIMIWDPDTGQKIPL----I--PKGL 238 (445)
T ss_pred cCcccccccccccccccchhheeCCCC-ceeeEEEE---cCCCCEEeecccCcceEEEEcCCCCCcccc----c--ccCC
Confidence 6521 11 11222 244 78999985 78898998887 467899999999886431 1 1234
Q ss_pred CcEEEEEechhccCCCcEEEeecCceeEeeecc-chhhhcccCCCCcccccccccccCCCCCCCcee--eeeecceeeee
Q 000722 264 GGVVAVELSRVMGGSPQLITIGADKTLAIWDTV-SFKELRRIKPVPKLACHSVASWCHPRAPNLDIL--TCVKDSHIWAI 340 (1331)
Q Consensus 264 ~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~-t~~~l~~~~~~~~l~~H~~~V~svafspdg~lL--a~s~Dg~IWdl 340 (1331)
+++.-+.|+| |+.+|..+.-|+..++|+.. +..+.+ ...-.+.|...+|+|+|.+| +++...+|+.+
T Consensus 239 gg~slLkwSP---dgd~lfaAt~davfrlw~e~q~wt~er-------w~lgsgrvqtacWspcGsfLLf~~sgsp~lysl 308 (445)
T KOG2139|consen 239 GGFSLLKWSP---DGDVLFAATCDAVFRLWQENQSWTKER-------WILGSGRVQTACWSPCGSFLLFACSGSPRLYSL 308 (445)
T ss_pred CceeeEEEcC---CCCEEEEecccceeeeehhcccceecc-------eeccCCceeeeeecCCCCEEEEEEcCCceEEEE
Confidence 5688999999 89999999999999999643 222211 12223478889999999944 66667778776
Q ss_pred ec
Q 000722 341 EH 342 (1331)
Q Consensus 341 ~~ 342 (1331)
.-
T Consensus 309 ~f 310 (445)
T KOG2139|consen 309 TF 310 (445)
T ss_pred ee
Confidence 64
No 224
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.87 E-value=1.9e-09 Score=123.75 Aligned_cols=225 Identities=14% Similarity=0.105 Sum_probs=166.1
Q ss_pred cCCCCCCCCceEEEEEeecceeEeeeecccCCCCCccccccccceeeehhhcccCCCcceEeecCCCceeeeeehhhhee
Q 000722 124 ASPPPSTKGRHFLVICCVNKAIFLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKL 203 (1331)
Q Consensus 124 ~svafspdg~~lLasgs~d~iIvwDl~t~~~~~i~~~~~h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~~~ 203 (1331)
+.+.++.+|+++++.|..+.+--+|+.+++..+ -..-...|..+.|+ .+.++++++ ....++|||-. |..
T Consensus 133 Y~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~---Ei~v~Etv~Dv~~L-----Hneq~~AVA-QK~y~yvYD~~-GtE 202 (545)
T KOG1272|consen 133 YHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHF---EINVMETVRDVTFL-----HNEQFFAVA-QKKYVYVYDNN-GTE 202 (545)
T ss_pred eeeeecCCccEEEecCCccceeeeecccceeee---eeehhhhhhhhhhh-----cchHHHHhh-hhceEEEecCC-CcE
Confidence 346778899988888887777789999876432 12225688999995 356666666 77889999954 555
Q ss_pred ehhhcCCCccchhhhhHhhhccccEEEeecCCCceEEEEeccCCCccccccccceeeeccCcEEEEEechhccCCCcEEE
Q 000722 204 VRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLIT 283 (1331)
Q Consensus 204 v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaS 283 (1331)
+..+. ....|..+. |-|.--+|++++..|.++--|+.+|+.+.. +..-.+.+..++-+| -...+-+
T Consensus 203 lHClk--~~~~v~rLe---FLPyHfLL~~~~~~G~L~Y~DVS~GklVa~------~~t~~G~~~vm~qNP---~NaVih~ 268 (545)
T KOG1272|consen 203 LHCLK--RHIRVARLE---FLPYHFLLVAASEAGFLKYQDVSTGKLVAS------IRTGAGRTDVMKQNP---YNAVIHL 268 (545)
T ss_pred Eeehh--hcCchhhhc---ccchhheeeecccCCceEEEeechhhhhHH------HHccCCccchhhcCC---ccceEEE
Confidence 55553 346777787 778888999999999999999999997765 344556678888888 5678889
Q ss_pred eecCceeEeeeccchhhhcccCCCCcccccccccccCCCCCCCcee-eeeecce--eeeeecCccccccccccccccCCC
Q 000722 284 IGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDIL-TCVKDSH--IWAIEHPTYSALTRPLCELSSLVP 360 (1331)
Q Consensus 284 gs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg~lL-a~s~Dg~--IWdl~~~~~~~l~~~~~~~~~~~~ 360 (1331)
|...|+|.+|...+.+++.. +-+|.+.|.++++.++|.++ ++|.|.. |||+++-. .
T Consensus 269 GhsnGtVSlWSP~skePLvK------iLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~---------------q 327 (545)
T KOG1272|consen 269 GHSNGTVSLWSPNSKEPLVK------ILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFY---------------Q 327 (545)
T ss_pred cCCCceEEecCCCCcchHHH------HHhcCCCcceEEECCCCcEEeecccccceeEeeecccc---------------c
Confidence 99999999999988877665 78999999999999999977 6778874 99999631 1
Q ss_pred ccccccccceEEEEEEeccCCccEeeecceeEEEEeecC
Q 000722 361 PQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFD 399 (1331)
Q Consensus 361 ~~~l~~h~~~~I~~la~sp~~~~lLAtGs~DG~Il~VWD 399 (1331)
+.++.. ......+++|. .+ +||.+..+.+ .+|.
T Consensus 328 l~t~~t--p~~a~~ls~Sq-kg-lLA~~~G~~v--~iw~ 360 (545)
T KOG1272|consen 328 LHTYRT--PHPASNLSLSQ-KG-LLALSYGDHV--QIWK 360 (545)
T ss_pred cceeec--CCCcccccccc-cc-ceeeecCCee--eeeh
Confidence 111111 12456677776 34 4777766655 5785
No 225
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.85 E-value=1.2e-08 Score=115.62 Aligned_cols=163 Identities=15% Similarity=0.163 Sum_probs=122.9
Q ss_pred CCCCCCCceEEEEEeec--cee-EeeeecccCC----CCCccc---cccccceeeehhhcccCCCcceEeecCCCceeee
Q 000722 126 PPPSTKGRHFLVICCVN--KAI-FLDLVTMRGR----DIPKQE---LDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRV 195 (1331)
Q Consensus 126 vafspdg~~lLasgs~d--~iI-vwDl~t~~~~----~i~~~~---~h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrl 195 (1331)
+.-++..+.++++|+.. ..+ +||++..+.. .++.-. .-.-+++.+.|.|. + ....|++++.-+.||+
T Consensus 154 ~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g--~-~~~~fat~T~~hqvR~ 230 (412)
T KOG3881|consen 154 VRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEG--S-PNYKFATITRYHQVRL 230 (412)
T ss_pred eccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCC--C-CCceEEEEecceeEEE
Confidence 33455556677778776 333 8888764211 111100 11347788999752 1 2678999999999999
Q ss_pred eehhhh-eeehhhcCCCccchhhhhHhhhccccEEEeecCCCceEEEEeccCCCccccccccceeeeccCcEEEEEechh
Q 000722 196 LSMISW-KLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRV 274 (1331)
Q Consensus 196 WDl~t~-~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~ 274 (1331)
||.+.+ +++..|. --..+++++. ..|+++++++|..-|.+..+|++.++.... .+.+..+.|.++..||
T Consensus 231 YDt~~qRRPV~~fd-~~E~~is~~~---l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~-----~~kg~tGsirsih~hp- 300 (412)
T KOG3881|consen 231 YDTRHQRRPVAQFD-FLENPISSTG---LTPSGNFIYTGNTKGQLAKFDLRGGKLLGC-----GLKGITGSIRSIHCHP- 300 (412)
T ss_pred ecCcccCcceeEec-cccCcceeee---ecCCCcEEEEecccchhheecccCceeecc-----ccCCccCCcceEEEcC-
Confidence 999864 5666665 5578888887 789999999999999999999999875432 3688899999999999
Q ss_pred ccCCCcEEEeecCceeEeeeccchhhhcc
Q 000722 275 MGGSPQLITIGADKTLAIWDTVSFKELRR 303 (1331)
Q Consensus 275 ~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~ 303 (1331)
..++++++|-|+.|||+|+.+.+.+..
T Consensus 301 --~~~~las~GLDRyvRIhD~ktrkll~k 327 (412)
T KOG3881|consen 301 --THPVLASCGLDRYVRIHDIKTRKLLHK 327 (412)
T ss_pred --CCceEEeeccceeEEEeecccchhhhh
Confidence 789999999999999999998666544
No 226
>PRK03629 tolB translocation protein TolB; Provisional
Probab=98.85 E-value=3.1e-08 Score=120.97 Aligned_cols=170 Identities=15% Similarity=0.034 Sum_probs=105.4
Q ss_pred CCCCCCCCceEEEEEeecc---eeEeeeecccCCCCCccccccccceeeehhhcccCCCcceEeecCCC-ceeeee--eh
Q 000722 125 SPPPSTKGRHFLVICCVNK---AIFLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSD-GVIRVL--SM 198 (1331)
Q Consensus 125 svafspdg~~lLasgs~d~---iIvwDl~t~~~~~i~~~~~h~~~V~~Vaf~P~s~Spdg~~LasGs~D-GtIrlW--Dl 198 (1331)
.+.|+|||+.++++.+.++ +.+||+.+++... +..+...+....| +|+|+.|+..+.+ +...|| |+
T Consensus 247 ~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~---lt~~~~~~~~~~w-----SPDG~~I~f~s~~~g~~~Iy~~d~ 318 (429)
T PRK03629 247 APAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQ---VTDGRSNNTEPTW-----FPDSQNLAYTSDQAGRPQVYKVNI 318 (429)
T ss_pred CeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEE---ccCCCCCcCceEE-----CCCCCEEEEEeCCCCCceEEEEEC
Confidence 4568999986655544333 4477887764332 2233445677888 7899988777654 444555 66
Q ss_pred hhheeehhhcCCCccchhhhhHhhhccccEEEeecCCC---ceEEEEeccCCCccccccccceeeeccCcEEEEEechhc
Q 000722 199 ISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSD---GLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVM 275 (1331)
Q Consensus 199 ~t~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~D---gtIrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~ 275 (1331)
.+++.. .+. .+.....+.. ++|+|+.|+..+.+ ..|.+||+.++... . +.. ........|+|
T Consensus 319 ~~g~~~-~lt-~~~~~~~~~~---~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~------Lt~-~~~~~~p~~Sp-- 383 (429)
T PRK03629 319 NGGAPQ-RIT-WEGSQNQDAD---VSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-V------LTD-TFLDETPSIAP-- 383 (429)
T ss_pred CCCCeE-Eee-cCCCCccCEE---ECCCCCEEEEEEccCCCceEEEEECCCCCeE-E------eCC-CCCCCCceECC--
Confidence 555433 222 2333444554 68999888765443 35888999877532 1 111 11234678999
Q ss_pred cCCCcEEEeecCce---eEeeeccchhhhcccCCCCcccccccccccCCCCCC
Q 000722 276 GGSPQLITIGADKT---LAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPN 325 (1331)
Q Consensus 276 ~dg~~LaSgs~Dg~---IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspd 325 (1331)
|+.+|+.++.++. +.+|++. |...++ +.+|...+...+|+|-
T Consensus 384 -DG~~i~~~s~~~~~~~l~~~~~~-G~~~~~------l~~~~~~~~~p~Wsp~ 428 (429)
T PRK03629 384 -NGTMVIYSSSQGMGSVLNLVSTD-GRFKAR------LPATDGQVKFPAWSPY 428 (429)
T ss_pred -CCCEEEEEEcCCCceEEEEEECC-CCCeEE------CccCCCCcCCcccCCC
Confidence 8999998887765 5666664 443333 4567777788888873
No 227
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.83 E-value=9.7e-09 Score=114.37 Aligned_cols=82 Identities=20% Similarity=0.295 Sum_probs=68.1
Q ss_pred CCCccccccccceeeehhhcccCCCcceEeecCCCceeeeeehhhheeehhhcCCCccchhhhhHhhhccccEEEeecCC
Q 000722 156 DIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGS 235 (1331)
Q Consensus 156 ~i~~~~~h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~ 235 (1331)
.+.++.+|.+.++|+.| .+....+.+|..|..|.+||+..++-+.....+|.+.|..+. .-+--..+.+++.
T Consensus 189 ~i~~~~~h~~~~~~l~W-----d~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~---~~~~t~~l~S~~e 260 (404)
T KOG1409|consen 189 LITTFNGHTGEVTCLKW-----DPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALS---YAQHTRQLISCGE 260 (404)
T ss_pred eEEEEcCcccceEEEEE-----cCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhh---hhhhheeeeeccC
Confidence 45566788999999999 677889999999999999999866555444449999999996 4555678999999
Q ss_pred CceEEEEecc
Q 000722 236 DGLLILWSAD 245 (1331)
Q Consensus 236 DgtIrVWDl~ 245 (1331)
||.|.+||++
T Consensus 261 dg~i~~w~mn 270 (404)
T KOG1409|consen 261 DGGIVVWNMN 270 (404)
T ss_pred CCeEEEEecc
Confidence 9999999986
No 228
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=98.82 E-value=5.3e-09 Score=121.82 Aligned_cols=138 Identities=20% Similarity=0.258 Sum_probs=106.6
Q ss_pred cccceeeehhhcccCCCcceEeecCCCceeeeeehhhh--------------ee--------------ehhhcCCCccch
Q 000722 164 NKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISW--------------KL--------------VRRYTGGHKGSI 215 (1331)
Q Consensus 164 ~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~--------------~~--------------v~~~~~gH~~~V 215 (1331)
...|+|+.|.|. +...++.+-.+|.+.+||..-- .. +..+. -..+.|
T Consensus 219 ktsvT~ikWvpg----~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~-~~~g~i 293 (636)
T KOG2394|consen 219 KSSVTCIKWVPG----SDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWH-IGEGSI 293 (636)
T ss_pred ccceEEEEEEeC----CCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeE-eccccc
Confidence 468999999873 4556777778999999976310 00 00000 012344
Q ss_pred hhhhHhhhccccEEEeecCCCceEEEEeccCCCccccccccceeeeccCcEEEEEechhccCCCcEEEeecCceeEeeec
Q 000722 216 SCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDT 295 (1331)
Q Consensus 216 ~~vawf~~spdg~lLaSgs~DgtIrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl 295 (1331)
+..+ |++||.+|++.|.||.+||+|..+.+++.. ++..-++..|++|+| |++||++|+.|-.|.||.+
T Consensus 294 n~f~---FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~------mkSYFGGLLCvcWSP---DGKyIvtGGEDDLVtVwSf 361 (636)
T KOG2394|consen 294 NEFA---FSPDGKYLATVSQDGFLRIFDFDTQELLGV------MKSYFGGLLCVCWSP---DGKYIVTGGEDDLVTVWSF 361 (636)
T ss_pred ccee---EcCCCceEEEEecCceEEEeeccHHHHHHH------HHhhccceEEEEEcC---CccEEEecCCcceEEEEEe
Confidence 4444 899999999999999999999988765432 344557899999999 9999999999999999999
Q ss_pred cchhhhcccCCCCcccccccccccCCCCC
Q 000722 296 VSFKELRRIKPVPKLACHSVASWCHPRAP 324 (1331)
Q Consensus 296 ~t~~~l~~~~~~~~l~~H~~~V~svafsp 324 (1331)
...+.+.+ -.+|..+|+.|+|.|
T Consensus 362 ~erRVVAR------GqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 362 EERRVVAR------GQGHKSWVSVVAFDP 384 (636)
T ss_pred ccceEEEe------ccccccceeeEeecc
Confidence 98887766 789999999999987
No 229
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.75 E-value=8.8e-08 Score=117.28 Aligned_cols=169 Identities=12% Similarity=0.005 Sum_probs=101.9
Q ss_pred CCCCCCCCceEEEEEeecc---eeEeeeecccCCCCCccccccccceeeehhhcccCCCcceEeecCC-Cce--eeeeeh
Q 000722 125 SPPPSTKGRHFLVICCVNK---AIFLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSS-DGV--IRVLSM 198 (1331)
Q Consensus 125 svafspdg~~lLasgs~d~---iIvwDl~t~~~~~i~~~~~h~~~V~~Vaf~P~s~Spdg~~LasGs~-DGt--IrlWDl 198 (1331)
+..|+|||+.++++.+.++ +.+||+.+++.+. +..+........| +|||++|+.+++ +|. |.++|+
T Consensus 252 ~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~---lt~~~~~~~~~~~-----spDG~~l~f~sd~~g~~~iy~~dl 323 (433)
T PRK04922 252 APSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTR---LTNHFGIDTEPTW-----APDGKSIYFTSDRGGRPQIYRVAA 323 (433)
T ss_pred CceECCCCCEEEEEEeCCCCceEEEEECCCCCeEE---CccCCCCccceEE-----CCCCCEEEEEECCCCCceEEEEEC
Confidence 4678999986666655443 4577887765332 3334444566788 789998887764 444 666676
Q ss_pred hhheeehhhcCCCccchhhhhHhhhccccEEEeecCCC---ceEEEEeccCCCccccccccceeeeccCcEEEEEechhc
Q 000722 199 ISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSD---GLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVM 275 (1331)
Q Consensus 199 ~t~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~D---gtIrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~ 275 (1331)
.+++..+... +........ ++|+|+.|+..+.+ ..|.+||+.+++.. . +. +........|+|
T Consensus 324 ~~g~~~~lt~--~g~~~~~~~---~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~------Lt-~~~~~~~p~~sp-- 388 (433)
T PRK04922 324 SGGSAERLTF--QGNYNARAS---VSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-T------LT-PGSLDESPSFAP-- 388 (433)
T ss_pred CCCCeEEeec--CCCCccCEE---ECCCCCEEEEEECCCCceeEEEEECCCCCeE-E------CC-CCCCCCCceECC--
Confidence 6655433222 223344455 68999988765433 26999999877532 1 22 222345678999
Q ss_pred cCCCcEEEeecC---ceeEeeeccchhhhcccCCCCcccccccccccCCCCC
Q 000722 276 GGSPQLITIGAD---KTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAP 324 (1331)
Q Consensus 276 ~dg~~LaSgs~D---g~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafsp 324 (1331)
++++|+..+.+ +.|.+++...+ ..+. +..+...+...+|+|
T Consensus 389 -dG~~i~~~s~~~g~~~L~~~~~~g~-~~~~------l~~~~g~~~~p~wsp 432 (433)
T PRK04922 389 -NGSMVLYATREGGRGVLAAVSTDGR-VRQR------LVSADGEVREPAWSP 432 (433)
T ss_pred -CCCEEEEEEecCCceEEEEEECCCC-ceEE------cccCCCCCCCCccCC
Confidence 88877766653 45777777533 2222 333445566667765
No 230
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=98.72 E-value=1e-07 Score=112.13 Aligned_cols=240 Identities=15% Similarity=0.158 Sum_probs=157.3
Q ss_pred cccccCCCCCCCCceEEEEEeeccee-EeeeecccCCC-------C-------------------Cccccc---------
Q 000722 120 TSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRD-------I-------------------PKQELD--------- 163 (1331)
Q Consensus 120 ~~~V~svafspdg~~lLasgs~d~iI-vwDl~t~~~~~-------i-------------------~~~~~h--------- 163 (1331)
....+.+..+|||+.++++|...-.| +||+.....+. + .+...|
T Consensus 51 p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy~~ 130 (703)
T KOG2321|consen 51 PTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHYRT 130 (703)
T ss_pred ccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeeeee
Confidence 34456788899999888888777666 66765432210 0 001111
Q ss_pred --cccceeeehhhcccCCCcceEeecCCCceeeeeehhhheeehhhcCCCccchhhhhHhhhccccEEEeecCCCceEEE
Q 000722 164 --NKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLIL 241 (1331)
Q Consensus 164 --~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrV 241 (1331)
...-+.+++| .+...+++.| ....|+-++++.|+.+..+. ...+.++++. .++...+|++|+.||.|..
T Consensus 131 RIP~~GRDm~y~----~~scDly~~g-sg~evYRlNLEqGrfL~P~~-~~~~~lN~v~---in~~hgLla~Gt~~g~VEf 201 (703)
T KOG2321|consen 131 RIPKFGRDMKYH----KPSCDLYLVG-SGSEVYRLNLEQGRFLNPFE-TDSGELNVVS---INEEHGLLACGTEDGVVEF 201 (703)
T ss_pred ecCcCCcccccc----CCCccEEEee-cCcceEEEEccccccccccc-cccccceeee---ecCccceEEecccCceEEE
Confidence 0111223332 2444444444 45568888999999998886 5668888887 6778889999999999999
Q ss_pred EeccCCCccccccccceeeeccCc-----EEEEEechhccCCCcEEEeecCceeEeeeccchhhhcccCCCCcccccccc
Q 000722 242 WSADHGQDSRELVPKLSLKAHDGG-----VVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVA 316 (1331)
Q Consensus 242 WDl~tg~~~~~~~~~~~l~gH~~~-----V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~ 316 (1331)
||.++...+..+.....+..|.+. |+++.|+- +|-.+++|..+|.|.|||+++.+++..- -.+...+
T Consensus 202 wDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d---~gL~~aVGts~G~v~iyDLRa~~pl~~k-----dh~~e~p 273 (703)
T KOG2321|consen 202 WDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRD---DGLHVAVGTSTGSVLIYDLRASKPLLVK-----DHGYELP 273 (703)
T ss_pred ecchhhhhheeeecccccCCCccccccCcceEEEecC---CceeEEeeccCCcEEEEEcccCCceeec-----ccCCccc
Confidence 999987765544333333445444 99999995 7999999999999999999998876541 1223346
Q ss_pred cccCCCCCCCc-eeeeeecc---eeeeeecCccccccccccccccCCCccccccccceEEEEEEeccCCccEeeecceeE
Q 000722 317 SWCHPRAPNLD-ILTCVKDS---HIWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVG 392 (1331)
Q Consensus 317 V~svafspdg~-lLa~s~Dg---~IWdl~~~~~~~l~~~~~~~~~~~~~~~l~~h~~~~I~~la~sp~~~~lLAtGs~DG 392 (1331)
|..+.|.+.++ --..+.|. +|||-.++. +...+.+.. .+..+++-|+ .-+++++..++
T Consensus 274 i~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk---------------~~asiEpt~--~lND~C~~p~-sGm~f~Ane~~ 335 (703)
T KOG2321|consen 274 IKKLDWQDTDQQNKVVSMDKRILKIWDECTGK---------------PMASIEPTS--DLNDFCFVPG-SGMFFTANESS 335 (703)
T ss_pred eeeecccccCCCceEEecchHHhhhcccccCC---------------ceeeccccC--CcCceeeecC-CceEEEecCCC
Confidence 66788866522 11223343 489987652 233333333 3777888884 55577887777
Q ss_pred EE
Q 000722 393 VI 394 (1331)
Q Consensus 393 ~I 394 (1331)
-+
T Consensus 336 ~m 337 (703)
T KOG2321|consen 336 KM 337 (703)
T ss_pred cc
Confidence 66
No 231
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=98.70 E-value=9.1e-08 Score=104.16 Aligned_cols=153 Identities=18% Similarity=0.167 Sum_probs=104.1
Q ss_pred CCCCCCCceEEEEEeec----------ceeEeeeecccCCCCCcccc-ccccceeeehhhcccCCCcceEee--cCCCce
Q 000722 126 PPPSTKGRHFLVICCVN----------KAIFLDLVTMRGRDIPKQEL-DNKSLVCMEFLSRSAVGDVPLVAF--GSSDGV 192 (1331)
Q Consensus 126 vafspdg~~lLasgs~d----------~iIvwDl~t~~~~~i~~~~~-h~~~V~~Vaf~P~s~Spdg~~Las--Gs~DGt 192 (1331)
+.|+++|+.+++....+ ..-++.++.... .+..... ..++|.+++| +|+|+.+++ |..++.
T Consensus 11 ~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~-~~~~i~l~~~~~I~~~~W-----sP~g~~favi~g~~~~~ 84 (194)
T PF08662_consen 11 LHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNI-PVESIELKKEGPIHDVAW-----SPNGNEFAVIYGSMPAK 84 (194)
T ss_pred EEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCC-ccceeeccCCCceEEEEE-----CcCCCEEEEEEccCCcc
Confidence 56899998666665521 111333322111 2223333 2457999999 778887644 557789
Q ss_pred eeeeehhhheeehhhcCCCccchhhhhHhhhccccEEEeecCC---CceEEEEeccCCCccccccccceeeeccCcEEEE
Q 000722 193 IRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGS---DGLLILWSADHGQDSRELVPKLSLKAHDGGVVAV 269 (1331)
Q Consensus 193 IrlWDl~t~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~---DgtIrVWDl~tg~~~~~~~~~~~l~gH~~~V~sv 269 (1331)
|.+||++ ++.+..+. ...++.+. ++|+|++|++|+. .|.|.+||+++.+.+.+ ..| ..++.+
T Consensus 85 v~lyd~~-~~~i~~~~---~~~~n~i~---wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~-------~~~-~~~t~~ 149 (194)
T PF08662_consen 85 VTLYDVK-GKKIFSFG---TQPRNTIS---WSPDGRFLVLAGFGNLNGDLEFWDVRKKKKIST-------FEH-SDATDV 149 (194)
T ss_pred cEEEcCc-ccEeEeec---CCCceEEE---ECCCCCEEEEEEccCCCcEEEEEECCCCEEeec-------ccc-CcEEEE
Confidence 9999997 55655553 45667776 6999999998864 46799999997765443 223 347899
Q ss_pred EechhccCCCcEEEeec------CceeEeeeccchhhhcc
Q 000722 270 ELSRVMGGSPQLITIGA------DKTLAIWDTVSFKELRR 303 (1331)
Q Consensus 270 afsp~~~dg~~LaSgs~------Dg~IrIWDl~t~~~l~~ 303 (1331)
+|+| +|++|++++. |+.++||++. |+.+.+
T Consensus 150 ~WsP---dGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~ 185 (194)
T PF08662_consen 150 EWSP---DGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYK 185 (194)
T ss_pred EEcC---CCCEEEEEEeccceeccccEEEEEec-CeEeEe
Confidence 9999 8999998874 7889999985 554443
No 232
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=98.69 E-value=4.6e-08 Score=122.12 Aligned_cols=147 Identities=18% Similarity=0.211 Sum_probs=114.8
Q ss_pred CCCCCceEEEEEe-ecceeEeeeecccCCCCCccccccccceeeehhhcccCCCcceEeecCCCceeeeeehhhheeehh
Q 000722 128 PSTKGRHFLVICC-VNKAIFLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRR 206 (1331)
Q Consensus 128 fspdg~~lLasgs-~d~iIvwDl~t~~~~~i~~~~~h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~~~v~~ 206 (1331)
++++.- .+++|+ .+.+++|+.... ...+ .+.+|.+.|..+.| +.+|.++++.|+|.++|+|++.+.+....
T Consensus 141 ~s~~~~-~i~~gsv~~~iivW~~~~d-n~p~-~l~GHeG~iF~i~~-----s~dg~~i~s~SdDRsiRlW~i~s~~~~~~ 212 (967)
T KOG0974|consen 141 DSAEEL-YIASGSVFGEIIVWKPHED-NKPI-RLKGHEGSIFSIVT-----SLDGRYIASVSDDRSIRLWPIDSREVLGC 212 (967)
T ss_pred ccCcEE-EEEeccccccEEEEecccc-CCcc-eecccCCceEEEEE-----ccCCcEEEEEecCcceeeeecccccccCc
Confidence 344443 555554 456778977622 2222 47899999999999 78999999999999999999999877763
Q ss_pred hcCCCccchhhhhHhhhccccEEEeecCCCceEEEEeccCCCccccccccceeeecc-CcEEEEEechhccCCCcEEEee
Q 000722 207 YTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHD-GGVVAVELSRVMGGSPQLITIG 285 (1331)
Q Consensus 207 ~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrVWDl~tg~~~~~~~~~~~l~gH~-~~V~svafsp~~~dg~~LaSgs 285 (1331)
..-+|...|..++ +.++ .++|++.|.++++|+.+..+. . .+.+|. +.+..++.++ +...++|++
T Consensus 213 ~~fgHsaRvw~~~---~~~n--~i~t~gedctcrvW~~~~~~l-~------~y~~h~g~~iw~~~~~~---~~~~~vT~g 277 (967)
T KOG0974|consen 213 TGFGHSARVWACC---FLPN--RIITVGEDCTCRVWGVNGTQL-E------VYDEHSGKGIWKIAVPI---GVIIKVTGG 277 (967)
T ss_pred ccccccceeEEEE---eccc--eeEEeccceEEEEEeccccee-h------hhhhhhhcceeEEEEcC---CceEEEeec
Confidence 3338999999987 6666 999999999999997664332 1 356675 4689999998 788999999
Q ss_pred cCceeEeeeccc
Q 000722 286 ADKTLAIWDTVS 297 (1331)
Q Consensus 286 ~Dg~IrIWDl~t 297 (1331)
.|+.+++||+..
T Consensus 278 ~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 278 NDSTLKLWDLNG 289 (967)
T ss_pred cCcchhhhhhhc
Confidence 999999999764
No 233
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.68 E-value=1.8e-07 Score=111.30 Aligned_cols=216 Identities=11% Similarity=0.147 Sum_probs=149.5
Q ss_pred ecCCceeEeecCCCceeeeccccceEEeeeccCCcccchhhhhhhhhhcccccccCCCCcccccCCceeEEeeecchhhH
Q 000722 20 HPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRGGSVKQVNFYDDDVRF 99 (1331)
Q Consensus 20 SPdg~~LaSgs~DGtV~VWD~~tg~~i~s~~~~~~~~i~~vspdg~~Lasgs~d~~g~~l~~l~gg~V~sVaf~DgtIrv 99 (1331)
.|-+.++|....||.+||||..+++...+|..... + .+.|+ ..+|.+..++...+.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~------------~-------s~t~~-----~~~w~L~~~~s~~k~ 57 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIAS------------L-------SGTCT-----YTKWGLSADYSPMKW 57 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchh------------c-------cCcce-----eEEEEEEeccchHHH
Confidence 45567999999999999999999998888862110 0 00011 112222223333332
Q ss_pred HHHhhhccccccCCcccccccccccCCCCCCCCceEEEEEeeccee-EeeeecccCCCCCccccccccceeeehhhcccC
Q 000722 100 WQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAV 178 (1331)
Q Consensus 100 Wdl~tg~~l~~~~~~~~~~~~~~V~svafspdg~~lLasgs~d~iI-vwDl~t~~~~~i~~~~~h~~~V~~Vaf~P~s~S 178 (1331)
-.+...+. -+.+. ..++-|...+.+ .++...++.........|.+.|+++.+ +
T Consensus 58 ~~~~~~~~--------------------~s~~t-~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~-----~ 111 (541)
T KOG4547|consen 58 LSLEKAKK--------------------ASLDT-SMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILD-----A 111 (541)
T ss_pred HhHHHHhh--------------------ccCCc-eEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeec-----c
Confidence 22111110 12233 366666666655 668777665544445788999999999 5
Q ss_pred CCcceEeecCCCceeeeeehhhheeehhhcCCCccchhhhhHhhhccccEEEeecCCCceEEEEeccCCCccccccccce
Q 000722 179 GDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLS 258 (1331)
Q Consensus 179 pdg~~LasGs~DGtIrlWDl~t~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrVWDl~tg~~~~~~~~~~~ 258 (1331)
.+-..|.+++.|+.+..|+....+.++.+. +.+..+.+++ .+||+..+++++ ++|++||+++++.+..
T Consensus 112 ~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~-~~~~~~~sl~---is~D~~~l~~as--~~ik~~~~~~kevv~~------ 179 (541)
T KOG4547|consen 112 QRLGCIYSVGADLKVVYILEKEKVIIRIWK-EQKPLVSSLC---ISPDGKILLTAS--RQIKVLDIETKEVVIT------ 179 (541)
T ss_pred cccCceEecCCceeEEEEecccceeeeeec-cCCCccceEE---EcCCCCEEEecc--ceEEEEEccCceEEEE------
Confidence 677889999999999999999999888887 7778888887 899999999877 6899999999886654
Q ss_pred eeeccCcEEEEEechhc-c-CCCcEE-EeecCceeEeeeccc
Q 000722 259 LKAHDGGVVAVELSRVM-G-GSPQLI-TIGADKTLAIWDTVS 297 (1331)
Q Consensus 259 l~gH~~~V~svafsp~~-~-dg~~La-Sgs~Dg~IrIWDl~t 297 (1331)
+.||.++|+++.|--.. + .|.+++ +...+.-+.+|-...
T Consensus 180 ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 180 FTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred ecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 79999999999997620 0 144554 445577788887654
No 234
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.67 E-value=2.4e-07 Score=113.29 Aligned_cols=222 Identities=14% Similarity=0.014 Sum_probs=130.8
Q ss_pred cccccCCCcEEEEEeecCCceeEeecCC---CceeeeccccceEEeeeccCCcccchhhhhhhhhhcccccccCCCCccc
Q 000722 5 KAFRPTNDKIVKIQLHPTHPWLVTADAS---DHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEA 81 (1331)
Q Consensus 5 ~~L~gHs~~V~~lafSPdg~~LaSgs~D---GtV~VWD~~tg~~i~s~~~~~~~~i~~vspdg~~Lasgs~d~~g~~l~~ 81 (1331)
+.+..|...+.+.+|||||++|+..+.+ ..|.+||+.+|+...... .
T Consensus 189 ~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~-~----------------------------- 238 (427)
T PRK02889 189 QSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVAN-F----------------------------- 238 (427)
T ss_pred eEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeec-C-----------------------------
Confidence 3455677889999999999988876543 358889988765432111 0
Q ss_pred ccCCceeEEeeecchhhHHHHhhhccccccCCcccccccccccCCCCCCCCceEEEEEeeccee-Ee--eeecccCCCCC
Q 000722 82 MRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FL--DLVTMRGRDIP 158 (1331)
Q Consensus 82 l~gg~V~sVaf~DgtIrvWdl~tg~~l~~~~~~~~~~~~~~V~svafspdg~~lLasgs~d~iI-vw--Dl~t~~~~~i~ 158 (1331)
.....+..|+|||+.++++.+.++.. +| |..++.. .
T Consensus 239 --------------------------------------~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~---~ 277 (427)
T PRK02889 239 --------------------------------------KGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGL---R 277 (427)
T ss_pred --------------------------------------CCCccceEECCCCCEEEEEEccCCCceEEEEECCCCCc---E
Confidence 01123467899998666666555533 44 5544332 2
Q ss_pred ccccccccceeeehhhcccCCCcceEeecCC-Cceeeeeeh--hhheeehhhcCCCccchhhhhHhhhccccEEEeecCC
Q 000722 159 KQELDNKSLVCMEFLSRSAVGDVPLVAFGSS-DGVIRVLSM--ISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGS 235 (1331)
Q Consensus 159 ~~~~h~~~V~~Vaf~P~s~Spdg~~LasGs~-DGtIrlWDl--~t~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~ 235 (1331)
.+..+........| +|||++|+..++ +|...||.+ .+++..+... +........ ++|+|++|+..+.
T Consensus 278 ~lt~~~~~~~~~~w-----SpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~--~g~~~~~~~---~SpDG~~Ia~~s~ 347 (427)
T PRK02889 278 RLTQSSGIDTEPFF-----SPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTF--TGSYNTSPR---ISPDGKLLAYISR 347 (427)
T ss_pred ECCCCCCCCcCeEE-----cCCCCEEEEEecCCCCcEEEEEECCCCceEEEec--CCCCcCceE---ECCCCCEEEEEEc
Confidence 23334445566788 789998876654 466666655 3443322221 222233444 6899999887665
Q ss_pred Cc---eEEEEeccCCCccccccccceeeeccCcEEEEEechhccCCCcEEEeecCc-e--eEeeeccchhhhcccCCCCc
Q 000722 236 DG---LLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADK-T--LAIWDTVSFKELRRIKPVPK 309 (1331)
Q Consensus 236 Dg---tIrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg-~--IrIWDl~t~~~l~~~~~~~~ 309 (1331)
++ .|.+||+.+++... +.. ........|+| +++.|+..+.++ . +.+.+.. +...+.
T Consensus 348 ~~g~~~I~v~d~~~g~~~~-------lt~-~~~~~~p~~sp---dg~~l~~~~~~~g~~~l~~~~~~-g~~~~~------ 409 (427)
T PRK02889 348 VGGAFKLYVQDLATGQVTA-------LTD-TTRDESPSFAP---NGRYILYATQQGGRSVLAAVSSD-GRIKQR------ 409 (427)
T ss_pred cCCcEEEEEEECCCCCeEE-------ccC-CCCccCceECC---CCCEEEEEEecCCCEEEEEEECC-CCceEE------
Confidence 54 69999998775321 111 12346789999 788777766544 2 4444442 332222
Q ss_pred ccccccccccCCCCCC
Q 000722 310 LACHSVASWCHPRAPN 325 (1331)
Q Consensus 310 l~~H~~~V~svafspd 325 (1331)
+..+.+.+...+|+|-
T Consensus 410 l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 410 LSVQGGDVREPSWGPF 425 (427)
T ss_pred eecCCCCCCCCccCCC
Confidence 3344455666777764
No 235
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.66 E-value=3.4e-07 Score=112.28 Aligned_cols=204 Identities=13% Similarity=0.038 Sum_probs=128.6
Q ss_pred ccccccCCCcEEEEEeecCCceeEeecC---CCceeeeccccceEEeeeccCCcccchhhhhhhhhhcccccccCCCCcc
Q 000722 4 LKAFRPTNDKIVKIQLHPTHPWLVTADA---SDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTE 80 (1331)
Q Consensus 4 l~~L~gHs~~V~~lafSPdg~~LaSgs~---DGtV~VWD~~tg~~i~s~~~~~~~~i~~vspdg~~Lasgs~d~~g~~l~ 80 (1331)
.+.+..|...|.+.+|+|||++|+..+. +..|.+||+.+|+... +...
T Consensus 194 ~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~-l~~~---------------------------- 244 (435)
T PRK05137 194 VRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL-VGNF---------------------------- 244 (435)
T ss_pred cEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE-eecC----------------------------
Confidence 3456778889999999999998887653 4589999987764321 1100
Q ss_pred cccCCceeEEeeecchhhHHHHhhhccccccCCcccccccccccCCCCCCCCceEEEEEeecc---eeEeeeecccCCCC
Q 000722 81 AMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNK---AIFLDLVTMRGRDI 157 (1331)
Q Consensus 81 ~l~gg~V~sVaf~DgtIrvWdl~tg~~l~~~~~~~~~~~~~~V~svafspdg~~lLasgs~d~---iIvwDl~t~~~~~i 157 (1331)
...+.+..|+|||+.++++.+.++ +.+||..++....
T Consensus 245 ---------------------------------------~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~- 284 (435)
T PRK05137 245 ---------------------------------------PGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTR- 284 (435)
T ss_pred ---------------------------------------CCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCceEE-
Confidence 112335678999986666665443 3466877654332
Q ss_pred CccccccccceeeehhhcccCCCcceEeecCC-Cc--eeeeeehhhheeehhhcCCCccchhhhhHhhhccccEEEeecC
Q 000722 158 PKQELDNKSLVCMEFLSRSAVGDVPLVAFGSS-DG--VIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGG 234 (1331)
Q Consensus 158 ~~~~~h~~~V~~Vaf~P~s~Spdg~~LasGs~-DG--tIrlWDl~t~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs 234 (1331)
+..+.....+..| +|||++|+..+. +| .|.+||+.+++..+ +. .+...+.... ++|+|+.|+..+
T Consensus 285 --Lt~~~~~~~~~~~-----spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~-lt-~~~~~~~~~~---~SpdG~~ia~~~ 352 (435)
T PRK05137 285 --LTDSPAIDTSPSY-----SPDGSQIVFESDRSGSPQLYVMNADGSNPRR-IS-FGGGRYSTPV---WSPRGDLIAFTK 352 (435)
T ss_pred --ccCCCCccCceeE-----cCCCCEEEEEECCCCCCeEEEEECCCCCeEE-ee-cCCCcccCeE---ECCCCCEEEEEE
Confidence 3334455667888 789998887764 33 67888877654433 32 2334455555 689999887655
Q ss_pred CC---ceEEEEeccCCCccccccccceeeeccCcEEEEEechhccCCCcEEEeecC------ceeEeeeccchh
Q 000722 235 SD---GLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGAD------KTLAIWDTVSFK 299 (1331)
Q Consensus 235 ~D---gtIrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~D------g~IrIWDl~t~~ 299 (1331)
.+ ..|.+||+.++.. +. +. +...+....|+| +++.|+..+.+ ..+.++|+..+.
T Consensus 353 ~~~~~~~i~~~d~~~~~~-~~------lt-~~~~~~~p~~sp---DG~~i~~~~~~~~~~~~~~L~~~dl~g~~ 415 (435)
T PRK05137 353 QGGGQFSIGVMKPDGSGE-RI------LT-SGFLVEGPTWAP---NGRVIMFFRQTPGSGGAPKLYTVDLTGRN 415 (435)
T ss_pred cCCCceEEEEEECCCCce-Ee------cc-CCCCCCCCeECC---CCCEEEEEEccCCCCCcceEEEEECCCCc
Confidence 43 4688888755432 11 11 122466789999 78877665442 256777776544
No 236
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.64 E-value=6.1e-07 Score=99.71 Aligned_cols=236 Identities=11% Similarity=0.112 Sum_probs=151.2
Q ss_pred cCCCCCCCCceEEEEEeecceeEeeeecccCCCCCccccccccceeeehhhcccCCCcceE-eecCCC------ceeeee
Q 000722 124 ASPPPSTKGRHFLVICCVNKAIFLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLV-AFGSSD------GVIRVL 196 (1331)
Q Consensus 124 ~svafspdg~~lLasgs~d~iIvwDl~t~~~~~i~~~~~h~~~V~~Vaf~P~s~Spdg~~L-asGs~D------GtIrlW 196 (1331)
.+++|+.|.. .++++.+++..+++.+..+..........+-.+..+-| ..+++ ++|+.+ ..|.||
T Consensus 9 lsvs~NQD~S-cFava~~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLf-------R~N~laLVGGg~~pky~pNkviIW 80 (346)
T KOG2111|consen 9 LSVSFNQDHS-CFAVATDTGFRIYNCDPFKESASRQFIDGGFKIVEMLF-------RSNYLALVGGGSRPKYPPNKVIIW 80 (346)
T ss_pred eEEEEccCCc-eEEEEecCceEEEecCchhhhhhhccccCchhhhhHhh-------hhceEEEecCCCCCCCCCceEEEE
Confidence 3478888887 88999999988887665322111111111223444445 23343 444433 479999
Q ss_pred ehhhheeehhhcCCCccchhhhhHhhhccccEEEeecCCCceEEEEeccC-CCccccccccceeeeccCcEEEEEechhc
Q 000722 197 SMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADH-GQDSRELVPKLSLKAHDGGVVAVELSRVM 275 (1331)
Q Consensus 197 Dl~t~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrVWDl~t-g~~~~~~~~~~~l~gH~~~V~svafsp~~ 275 (1331)
|-...+++..+ ....+|.++. +.++ .|+. -.++.|.||...+ .+.++.+. + .....++.+++-+.
T Consensus 81 DD~k~~~i~el--~f~~~I~~V~---l~r~--riVv-vl~~~I~VytF~~n~k~l~~~e---t-~~NPkGlC~~~~~~-- 146 (346)
T KOG2111|consen 81 DDLKERCIIEL--SFNSEIKAVK---LRRD--RIVV-VLENKIYVYTFPDNPKLLHVIE---T-RSNPKGLCSLCPTS-- 146 (346)
T ss_pred ecccCcEEEEE--EeccceeeEE---EcCC--eEEE-EecCeEEEEEcCCChhheeeee---c-ccCCCceEeecCCC--
Confidence 96667777766 3778888886 4444 3333 3578999999873 34333211 1 11223344444333
Q ss_pred cCCCcEEE-eecCceeEeeeccchhhhcccCCCCcccccccccccCCCCCCCcee-eeeecce---eeeeecCccccccc
Q 000722 276 GGSPQLIT-IGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDIL-TCVKDSH---IWAIEHPTYSALTR 350 (1331)
Q Consensus 276 ~dg~~LaS-gs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg~lL-a~s~Dg~---IWdl~~~~~~~l~~ 350 (1331)
+..+|+. |-.-|.|.|-|+...+.- +...+..|...|.|++.+-+|.++ ++|..|+ |||..+++.
T Consensus 147 -~k~~LafPg~k~GqvQi~dL~~~~~~----~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~----- 216 (346)
T KOG2111|consen 147 -NKSLLAFPGFKTGQVQIVDLASTKPN----APSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTL----- 216 (346)
T ss_pred -CceEEEcCCCccceEEEEEhhhcCcC----CceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcE-----
Confidence 4445554 345799999998765431 223468999999999999999987 5677886 788876532
Q ss_pred cccccccCCCcccccc-ccceEEEEEEeccCCccEeeecceeEEEEeecCCCCC
Q 000722 351 PLCELSSLVPPQVLAH-HKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPRSL 403 (1331)
Q Consensus 351 ~~~~~~~~~~~~~l~~-h~~~~I~~la~sp~~~~lLAtGs~DG~Il~VWDlr~~ 403 (1331)
+..++. .....|+||+||| +..+||+.++.|++ +||.++..
T Consensus 217 ----------l~E~RRG~d~A~iy~iaFSp-~~s~LavsSdKgTl-HiF~l~~~ 258 (346)
T KOG2111|consen 217 ----------LQELRRGVDRADIYCIAFSP-NSSWLAVSSDKGTL-HIFSLRDT 258 (346)
T ss_pred ----------eeeeecCCchheEEEEEeCC-CccEEEEEcCCCeE-EEEEeecC
Confidence 223332 2223799999999 57789999999998 89998753
No 237
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.62 E-value=3.2e-07 Score=102.41 Aligned_cols=310 Identities=12% Similarity=0.105 Sum_probs=168.7
Q ss_pred CCcEEEEEeecCCceeEeecCCCceeeeccccce-----EEeeeccCCcccchhhhhhhhhhcccccccCCCCcccccCC
Q 000722 11 NDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQ-----VIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRGG 85 (1331)
Q Consensus 11 s~~V~~lafSPdg~~LaSgs~DGtV~VWD~~tg~-----~i~s~~~~~~~~i~~vspdg~~Lasgs~d~~g~~l~~l~gg 85 (1331)
.+-|.++.|..+|.+|+||+.+|.|.++.-.... ....++.|. |.-
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshe--------pEF--------------------- 75 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHE--------PEF--------------------- 75 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccC--------ccc---------------------
Confidence 3568999999999999999999999998643211 111222111 000
Q ss_pred ceeEEeeecchhhHHHHhhhccccccCCcccccccccccCCCCCCCCc--eEEEEEeecceeEeeeecccCCCCC---cc
Q 000722 86 SVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGR--HFLVICCVNKAIFLDLVTMRGRDIP---KQ 160 (1331)
Q Consensus 86 ~V~sVaf~DgtIrvWdl~tg~~l~~~~~~~~~~~~~~V~svafspdg~--~lLasgs~d~iIvwDl~t~~~~~i~---~~ 160 (1331)
..++.-++ ...|..+.|.+++. .+|+++.+..+-+|-+.....+.-. ..
T Consensus 76 ---------DYLkSlei-----------------eEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~ 129 (433)
T KOG1354|consen 76 ---------DYLKSLEI-----------------EEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPE 129 (433)
T ss_pred ---------chhhhhhh-----------------hhhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccc
Confidence 11111111 23355566766543 3566655555558866542221100 00
Q ss_pred ccccccceeeehhhcccCCCcceEeecCCCceeeeeehhhheeehhhcCCCccchhhhhHhhhccccEEEeecCCCceEE
Q 000722 161 ELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLI 240 (1331)
Q Consensus 161 ~~h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIr 240 (1331)
......++++.. .+.+..|-.+. ..+.+.+..+|.--|+++. ++.|+..++| +.|-.|.
T Consensus 130 ~~~~~~~~~lr~-----------p~~~~~~~~ve------a~prRv~aNaHtyhiNSIS---~NsD~Et~lS-ADdLRIN 188 (433)
T KOG1354|consen 130 EGPPGTITSLRL-----------PVEGRHDLEVE------ASPRRVYANAHTYHINSIS---VNSDKETFLS-ADDLRIN 188 (433)
T ss_pred cCCCCccceeec-----------eeeccccceee------eeeeeeccccceeEeeeee---ecCccceEee-ccceeee
Confidence 111122222222 23333333221 2355566678999999998 7888888887 5688999
Q ss_pred EEeccCCCcccccccc--ceeeeccCcEEEEEechhccCCCcEEEeecCceeEeeeccchhhh----cccCCCC------
Q 000722 241 LWSADHGQDSRELVPK--LSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKEL----RRIKPVP------ 308 (1331)
Q Consensus 241 VWDl~tg~~~~~~~~~--~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l----~~~~~~~------ 308 (1331)
+|++.-......+..+ ..+..-..-|++..|||. ....++-.+..|+||+.|++....- ..+....
T Consensus 189 LWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~--~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rs 266 (433)
T KOG1354|consen 189 LWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPH--HCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRS 266 (433)
T ss_pred eccccccCCceeEEEccccCHHHHHHHHhhhccCHh--HccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchh
Confidence 9998743321111000 011222345889999994 5678888889999999999843211 1111111
Q ss_pred cccccccccccCCCCCCCceeeeeecc--eeeeeecCccccccccccccccCCCccccccccceEEEEEEeccCCccEee
Q 000722 309 KLACHSVASWCHPRAPNLDILTCVKDS--HIWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVA 386 (1331)
Q Consensus 309 ~l~~H~~~V~svafspdg~lLa~s~Dg--~IWdl~~~~~~~l~~~~~~~~~~~~~~~l~~h~~~~I~~la~sp~~~~lLA 386 (1331)
-+..--..|+.+.|+++|+++.+-.=. +|||++.........+..+....+....+..+.-..-..++|+. ++..+.
T Consensus 267 ffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg-~~~~v~ 345 (433)
T KOG1354|consen 267 FFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSG-NDSYVM 345 (433)
T ss_pred hHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcC-CcceEe
Confidence 122233467789999999977553322 58999753221111111110000000111111111124567887 466799
Q ss_pred ecceeEEEEeecCC
Q 000722 387 TGTNVGVIISEFDP 400 (1331)
Q Consensus 387 tGs~DG~Il~VWDl 400 (1331)
||+....+ ++|+.
T Consensus 346 TGsy~n~f-rvf~~ 358 (433)
T KOG1354|consen 346 TGSYNNVF-RVFNL 358 (433)
T ss_pred cccccceE-EEecC
Confidence 99999998 89985
No 238
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.61 E-value=2.5e-08 Score=118.99 Aligned_cols=293 Identities=14% Similarity=0.113 Sum_probs=156.4
Q ss_pred cccccCCCcEEEEEeecCCceeEeecCCCceeeeccccceEEeeeccCCcccchhhhhhhhhhcccccccCCCCcccccC
Q 000722 5 KAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRG 84 (1331)
Q Consensus 5 ~~L~gHs~~V~~lafSPdg~~LaSgs~DGtV~VWD~~tg~~i~s~~~~~~~~i~~vspdg~~Lasgs~d~~g~~l~~l~g 84 (1331)
.++..+...-..+.|+|||+++.+++.||.|.++|+.+++.+.++..+....-..++++|++++.+.
T Consensus 30 ~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~~s~DG~~~~v~n------------- 96 (369)
T PF02239_consen 30 ARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIAVSPDGKYVYVAN------------- 96 (369)
T ss_dssp EEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEEE--TTTEEEEEE-------------
T ss_pred EEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEEEcCCCCEEEEEe-------------
Confidence 3444443344457899999999999999999999999999999998765444444446676665442
Q ss_pred CceeEEeeecchhhHHHHhhhccccccCCc--ccccccccccCCCCCCCCceEEEEEeeccee-EeeeecccCCCCCccc
Q 000722 85 GSVKQVNFYDDDVRFWQLWRNRAAAAEAPT--AVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQE 161 (1331)
Q Consensus 85 g~V~sVaf~DgtIrvWdl~tg~~l~~~~~~--~~~~~~~~V~svafspdg~~lLasgs~d~iI-vwDl~t~~~~~i~~~~ 161 (1331)
+.++.+.++|..+.+.+...... ........+.++..+|.++.+++.--+.+.+ +.|+...+.... ...
T Consensus 97 -------~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~-~~i 168 (369)
T PF02239_consen 97 -------YEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKV-TTI 168 (369)
T ss_dssp -------EETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEE-EEE
T ss_pred -------cCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccce-eee
Confidence 34677777777666543211100 0000233455565677776455554443444 447655321111 112
Q ss_pred cccccceeeehhhcccCCCcceEeec-CCCceeeeeehhhheeehhhcCC---CccchhhhhHhhhcccc-EEEeecC-C
Q 000722 162 LDNKSLVCMEFLSRSAVGDVPLVAFG-SSDGVIRVLSMISWKLVRRYTGG---HKGSISCLMTFMASSGE-ALLVSGG-S 235 (1331)
Q Consensus 162 ~h~~~V~~Vaf~P~s~Spdg~~LasG-s~DGtIrlWDl~t~~~v~~~~~g---H~~~V~~vawf~~spdg-~lLaSgs-~ 235 (1331)
..........| +|++++++.+ ..+..|-++|..+++.+..+..+ |...+..+ .+|.. ....++. .
T Consensus 169 ~~g~~~~D~~~-----dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~----php~~g~vw~~~~~~ 239 (369)
T PF02239_consen 169 KVGRFPHDGGF-----DPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANF----PHPGFGPVWATSGLG 239 (369)
T ss_dssp E--TTEEEEEE------TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEE----EETTTEEEEEEEBSS
T ss_pred ccccccccccc-----CcccceeeecccccceeEEEeeccceEEEEeeccccccccccccc----cCCCcceEEeecccc
Confidence 22445667788 7789887664 56678999999998777655322 43333322 23332 2222221 1
Q ss_pred C--------ceEEEEeccCCCccccccccceeeeccCcEEEEEechhccCCCcEEEe----ecCceeEeeeccchhhhcc
Q 000722 236 D--------GLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITI----GADKTLAIWDTVSFKELRR 303 (1331)
Q Consensus 236 D--------gtIrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSg----s~Dg~IrIWDl~t~~~l~~ 303 (1331)
+ ..+.+||..+.+.++ .+.....+ .-+..|| +++++.+. ...++|.++|.++.+.+.+
T Consensus 240 ~~~~~~ig~~~v~v~d~~~wkvv~------~I~~~G~g-lFi~thP---~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~ 309 (369)
T PF02239_consen 240 YFAIPLIGTDPVSVHDDYAWKVVK------TIPTQGGG-LFIKTHP---DSRYVWVDTFLNPDADTVQVIDKKTLKVVKT 309 (369)
T ss_dssp SSEEEEEE--TTT-STTTBTSEEE------EEE-SSSS---EE--T---T-SEEEEE-TT-SSHT-EEEEECCGTEEEE-
T ss_pred ceecccccCCccccchhhcCeEEE------EEECCCCc-ceeecCC---CCccEEeeccCCCCCceEEEEECcCcceeEE
Confidence 2 233345555544433 35555555 6778898 88888887 5568999999998865554
Q ss_pred cCCCCcccccccccccCCCCCCCcee--eeeecc-e--eeeeec
Q 000722 304 IKPVPKLACHSVASWCHPRAPNLDIL--TCVKDS-H--IWAIEH 342 (1331)
Q Consensus 304 ~~~~~~l~~H~~~V~svafspdg~lL--a~s~Dg-~--IWdl~~ 342 (1331)
+. .+-...+..+.|+++|+.+ +....+ . |+|..+
T Consensus 310 i~-----~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~T 348 (369)
T PF02239_consen 310 IT-----PGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKT 348 (369)
T ss_dssp HH-----HHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTT
T ss_pred Ee-----ccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCC
Confidence 31 1111236678999999944 443333 4 576664
No 239
>PRK03629 tolB translocation protein TolB; Provisional
Probab=98.59 E-value=2.1e-07 Score=113.85 Aligned_cols=203 Identities=12% Similarity=0.082 Sum_probs=120.5
Q ss_pred hhhHHHHhhhccccccCCcccccccccccCCCCCCCCceEEEEEee---cceeEeeeecccCCCCCccccccccceeeeh
Q 000722 96 DVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCV---NKAIFLDLVTMRGRDIPKQELDNKSLVCMEF 172 (1331)
Q Consensus 96 tIrvWdl~tg~~l~~~~~~~~~~~~~~V~svafspdg~~lLasgs~---d~iIvwDl~t~~~~~i~~~~~h~~~V~~Vaf 172 (1331)
.|.+||....... .... ....+.+.+|+|||+.++.+... ..+.+||+.+++.+.+.... ..+....|
T Consensus 180 ~l~~~d~dg~~~~-----~lt~-~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~---~~~~~~~~ 250 (429)
T PRK03629 180 ELRVSDYDGYNQF-----VVHR-SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFP---RHNGAPAF 250 (429)
T ss_pred eEEEEcCCCCCCE-----Eeec-CCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCC---CCcCCeEE
Confidence 5666776544321 1111 13457789999999855444321 23446788776544433332 33456788
Q ss_pred hhcccCCCcceEeec-CCCc--eeeeeehhhheeehhhcCCCccchhhhhHhhhccccEEEeecCC-CceEEEE--eccC
Q 000722 173 LSRSAVGDVPLVAFG-SSDG--VIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGS-DGLLILW--SADH 246 (1331)
Q Consensus 173 ~P~s~Spdg~~LasG-s~DG--tIrlWDl~t~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~-DgtIrVW--Dl~t 246 (1331)
+|||+.|+.. +.+| .|.+||+.+++..+.. .+...+.... ++|+|+.|+..+. ++...+| |+.+
T Consensus 251 -----SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt--~~~~~~~~~~---wSPDG~~I~f~s~~~g~~~Iy~~d~~~ 320 (429)
T PRK03629 251 -----SPDGSKLAFALSKTGSLNLYVMDLASGQIRQVT--DGRSNNTEPT---WFPDSQNLAYTSDQAGRPQVYKVNING 320 (429)
T ss_pred -----CCCCCEEEEEEcCCCCcEEEEEECCCCCEEEcc--CCCCCcCceE---ECCCCCEEEEEeCCCCCceEEEEECCC
Confidence 7899988754 4444 5889999887665443 2334555565 6899998876654 4444555 5555
Q ss_pred CCccccccccceeeeccCcEEEEEechhccCCCcEEEeecC---ceeEeeeccchhhhcccCCCCcccccccccccCCCC
Q 000722 247 GQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGAD---KTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRA 323 (1331)
Q Consensus 247 g~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~D---g~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafs 323 (1331)
+... .+..+........|+| ++++|+..+.+ ..|.+||+.++... .+. .. .......|+
T Consensus 321 g~~~-------~lt~~~~~~~~~~~Sp---DG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt------~~-~~~~~p~~S 382 (429)
T PRK03629 321 GAPQ-------RITWEGSQNQDADVSS---DGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLT------DT-FLDETPSIA 382 (429)
T ss_pred CCeE-------EeecCCCCccCEEECC---CCCEEEEEEccCCCceEEEEECCCCCeE-EeC------CC-CCCCCceEC
Confidence 4321 1222334456789999 88888766543 35888998877532 211 11 122367799
Q ss_pred CCCcee-eeeecc
Q 000722 324 PNLDIL-TCVKDS 335 (1331)
Q Consensus 324 pdg~lL-a~s~Dg 335 (1331)
|||+.| ..+.++
T Consensus 383 pDG~~i~~~s~~~ 395 (429)
T PRK03629 383 PNGTMVIYSSSQG 395 (429)
T ss_pred CCCCEEEEEEcCC
Confidence 999966 445454
No 240
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.59 E-value=7.5e-06 Score=98.17 Aligned_cols=114 Identities=15% Similarity=0.125 Sum_probs=77.4
Q ss_pred CcEEEEEechhccCCCcEEEeecCceeEeeeccchhh---------hcccCCCCcccccccccccCCCCCCCceeeee-e
Q 000722 264 GGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKE---------LRRIKPVPKLACHSVASWCHPRAPNLDILTCV-K 333 (1331)
Q Consensus 264 ~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~---------l~~~~~~~~l~~H~~~V~svafspdg~lLa~s-~ 333 (1331)
....++.|+. ...+|++||.||.+++..+.+... ...+..-+++.||...|.-+.|+.+.+-|+.| .
T Consensus 15 vkL~c~~WNk---e~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt 91 (1189)
T KOG2041|consen 15 VKLHCAEWNK---ESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDT 91 (1189)
T ss_pred ceEEEEEEcc---cCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCC
Confidence 4478999998 788999999999999998765321 11222335689999999999999998888766 4
Q ss_pred cce--eeeeecCccccccccccccccCCCccccccccceEEEEEEeccCCccEeeecceeEEEE
Q 000722 334 DSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVII 395 (1331)
Q Consensus 334 Dg~--IWdl~~~~~~~l~~~~~~~~~~~~~~~l~~h~~~~I~~la~sp~~~~lLAtGs~DG~Il 395 (1331)
+|- ||-+-.+.... . .....++.-|.+|.|..+ |..++....||.||
T Consensus 92 ~GlIiVWmlykgsW~E-------------E-MiNnRnKSvV~SmsWn~d-G~kIcIvYeDGavI 140 (1189)
T KOG2041|consen 92 SGLIIVWMLYKGSWCE-------------E-MINNRNKSVVVSMSWNLD-GTKICIVYEDGAVI 140 (1189)
T ss_pred CceEEEEeeecccHHH-------------H-HhhCcCccEEEEEEEcCC-CcEEEEEEccCCEE
Confidence 554 79887653210 0 111222336888888884 55566655555553
No 241
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.52 E-value=4e-07 Score=103.45 Aligned_cols=119 Identities=13% Similarity=0.117 Sum_probs=96.2
Q ss_pred cCCCCCCC-CceEEEEEeeccee-EeeeecccCCCCCccccccccceeeehhhcccCCCcceEeecCCCceeeeeehhhh
Q 000722 124 ASPPPSTK-GRHFLVICCVNKAI-FLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISW 201 (1331)
Q Consensus 124 ~svafspd-g~~lLasgs~d~iI-vwDl~t~~~~~i~~~~~h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~ 201 (1331)
+++.|-+. ..+.|+++..-+.+ +||.+.++ +.+..+......++++.. .|++++|++|..-|.+..||++++
T Consensus 206 tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qR-RPV~~fd~~E~~is~~~l-----~p~gn~Iy~gn~~g~l~~FD~r~~ 279 (412)
T KOG3881|consen 206 TDIRFLEGSPNYKFATITRYHQVRLYDTRHQR-RPVAQFDFLENPISSTGL-----TPSGNFIYTGNTKGQLAKFDLRGG 279 (412)
T ss_pred ccceecCCCCCceEEEEecceeEEEecCcccC-cceeEeccccCcceeeee-----cCCCcEEEEecccchhheecccCc
Confidence 34556554 12367777766666 67988653 456666777889999998 578999999999999999999999
Q ss_pred eeehhhcCCCccchhhhhHhhhccccEEEeecCCCceEEEEeccCCCccc
Q 000722 202 KLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSR 251 (1331)
Q Consensus 202 ~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrVWDl~tg~~~~ 251 (1331)
+.......+..+.|.++. .+|...++++|+.|+.|||+|+.+.+.+.
T Consensus 280 kl~g~~~kg~tGsirsih---~hp~~~~las~GLDRyvRIhD~ktrkll~ 326 (412)
T KOG3881|consen 280 KLLGCGLKGITGSIRSIH---CHPTHPVLASCGLDRYVRIHDIKTRKLLH 326 (412)
T ss_pred eeeccccCCccCCcceEE---EcCCCceEEeeccceeEEEeecccchhhh
Confidence 988875558999999997 79999999999999999999999977654
No 242
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.51 E-value=4.7e-07 Score=110.90 Aligned_cols=199 Identities=17% Similarity=0.086 Sum_probs=119.2
Q ss_pred chhhHHHHhhhccccccCCcccccccccccCCCCCCCCceEEEEEeec---ceeEeeeecccCCCCCccccccccceeee
Q 000722 95 DDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVN---KAIFLDLVTMRGRDIPKQELDNKSLVCME 171 (1331)
Q Consensus 95 gtIrvWdl~tg~~l~~~~~~~~~~~~~~V~svafspdg~~lLasgs~d---~iIvwDl~t~~~~~i~~~~~h~~~V~~Va 171 (1331)
..|.+||....... ....+ ...+.+..|+|||+.++.+...+ .+.+||+.+++...+. .......+..
T Consensus 184 ~~l~i~D~~g~~~~-----~lt~~-~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~---~~~g~~~~~~ 254 (433)
T PRK04922 184 YALQVADSDGYNPQ-----TILRS-AEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVA---SFRGINGAPS 254 (433)
T ss_pred EEEEEECCCCCCce-----EeecC-CCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEec---cCCCCccCce
Confidence 35777886443221 12222 45678899999998444443222 2447788776543322 2233445678
Q ss_pred hhhcccCCCcceEe-ecCCCc--eeeeeehhhheeehhhcCCCccchhhhhHhhhccccEEEeecC-CCce--EEEEecc
Q 000722 172 FLSRSAVGDVPLVA-FGSSDG--VIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGG-SDGL--LILWSAD 245 (1331)
Q Consensus 172 f~P~s~Spdg~~La-sGs~DG--tIrlWDl~t~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs-~Dgt--IrVWDl~ 245 (1331)
| +|+|+.|+ +.+.+| .|++||+.+++... +. .|........ ++|+|+.|+.++ .+|. |.++|+.
T Consensus 255 ~-----SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~-lt-~~~~~~~~~~---~spDG~~l~f~sd~~g~~~iy~~dl~ 324 (433)
T PRK04922 255 F-----SPDGRRLALTLSRDGNPEIYVMDLGSRQLTR-LT-NHFGIDTEPT---WAPDGKSIYFTSDRGGRPQIYRVAAS 324 (433)
T ss_pred E-----CCCCCEEEEEEeCCCCceEEEEECCCCCeEE-Cc-cCCCCccceE---ECCCCCEEEEEECCCCCceEEEEECC
Confidence 8 78998775 444454 59999998876543 33 4444445555 689998877655 4454 5566666
Q ss_pred CCCccccccccceeeeccCcEEEEEechhccCCCcEEEeecCc---eeEeeeccchhhhcccCCCCcccccccccccCCC
Q 000722 246 HGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADK---TLAIWDTVSFKELRRIKPVPKLACHSVASWCHPR 322 (1331)
Q Consensus 246 tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg---~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svaf 322 (1331)
+++... +..+.......+|+| ++++|+..+.++ .|.+||+.+++.. .+ . +........|
T Consensus 325 ~g~~~~-------lt~~g~~~~~~~~Sp---DG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~L------t-~~~~~~~p~~ 386 (433)
T PRK04922 325 GGSAER-------LTFQGNYNARASVSP---DGKKIAMVHGSGGQYRIAVMDLSTGSVR-TL------T-PGSLDESPSF 386 (433)
T ss_pred CCCeEE-------eecCCCCccCEEECC---CCCEEEEEECCCCceeEEEEECCCCCeE-EC------C-CCCCCCCceE
Confidence 654211 111223345689999 888887655432 6999999877643 21 1 1123346789
Q ss_pred CCCCceee
Q 000722 323 APNLDILT 330 (1331)
Q Consensus 323 spdg~lLa 330 (1331)
+|||+.+.
T Consensus 387 spdG~~i~ 394 (433)
T PRK04922 387 APNGSMVL 394 (433)
T ss_pred CCCCCEEE
Confidence 99999653
No 243
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.46 E-value=1.8e-06 Score=104.87 Aligned_cols=192 Identities=14% Similarity=0.065 Sum_probs=116.9
Q ss_pred cccccCCCcEEEEEeecCCceeEeecCC---CceeeeccccceEEeeeccCCcccchhhhhhhhhhcccccccCCCCccc
Q 000722 5 KAFRPTNDKIVKIQLHPTHPWLVTADAS---DHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEA 81 (1331)
Q Consensus 5 ~~L~gHs~~V~~lafSPdg~~LaSgs~D---GtV~VWD~~tg~~i~s~~~~~~~~i~~vspdg~~Lasgs~d~~g~~l~~ 81 (1331)
+.+..|...+.+.+|+|+|++|+.+..+ ..|.+||+.+++...... .
T Consensus 183 ~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~-~----------------------------- 232 (417)
T TIGR02800 183 QTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVAS-F----------------------------- 232 (417)
T ss_pred EEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeec-C-----------------------------
Confidence 4455566678888899999888776543 368888877654322111 0
Q ss_pred ccCCceeEEeeecchhhHHHHhhhccccccCCcccccccccccCCCCCCCCceEEEEEeecc---eeEeeeecccCCCCC
Q 000722 82 MRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNK---AIFLDLVTMRGRDIP 158 (1331)
Q Consensus 82 l~gg~V~sVaf~DgtIrvWdl~tg~~l~~~~~~~~~~~~~~V~svafspdg~~lLasgs~d~---iIvwDl~t~~~~~i~ 158 (1331)
...+.+++|+|+|+.++++.+.++ +.+||+.++....+
T Consensus 233 --------------------------------------~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l- 273 (417)
T TIGR02800 233 --------------------------------------PGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRL- 273 (417)
T ss_pred --------------------------------------CCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEEEC-
Confidence 111234678999986666654433 44678776543322
Q ss_pred ccccccccceeeehhhcccCCCcceEeecCC-Cc--eeeeeehhhheeehhhcCCCccchhhhhHhhhccccEEEeecCC
Q 000722 159 KQELDNKSLVCMEFLSRSAVGDVPLVAFGSS-DG--VIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGS 235 (1331)
Q Consensus 159 ~~~~h~~~V~~Vaf~P~s~Spdg~~LasGs~-DG--tIrlWDl~t~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~ 235 (1331)
..+........| ++++++|+..+. ++ .|.+||+.+++... +. .+...+.... ++|++++|+.++.
T Consensus 274 --~~~~~~~~~~~~-----s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~-l~-~~~~~~~~~~---~spdg~~i~~~~~ 341 (417)
T TIGR02800 274 --TNGPGIDTEPSW-----SPDGKSIAFTSDRGGSPQIYMMDADGGEVRR-LT-FRGGYNASPS---WSPDGDLIAFVHR 341 (417)
T ss_pred --CCCCCCCCCEEE-----CCCCCEEEEEECCCCCceEEEEECCCCCEEE-ee-cCCCCccCeE---ECCCCCEEEEEEc
Confidence 223334456678 679988876654 33 57777877665433 22 2444555555 6899998888777
Q ss_pred Cc---eEEEEeccCCCccccccccceeeeccCcEEEEEechhccCCCcEEEeecCc
Q 000722 236 DG---LLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADK 288 (1331)
Q Consensus 236 Dg---tIrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg 288 (1331)
++ .|.+||+.++... . +..+ .......|+| ++.+|+..+.++
T Consensus 342 ~~~~~~i~~~d~~~~~~~-~------l~~~-~~~~~p~~sp---dg~~l~~~~~~~ 386 (417)
T TIGR02800 342 EGGGFNIAVMDLDGGGER-V------LTDT-GLDESPSFAP---NGRMILYATTRG 386 (417)
T ss_pred cCCceEEEEEeCCCCCeE-E------ccCC-CCCCCceECC---CCCEEEEEEeCC
Confidence 65 7889998775421 1 1111 1234568998 777777766654
No 244
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.45 E-value=1.8e-07 Score=108.51 Aligned_cols=249 Identities=15% Similarity=0.221 Sum_probs=154.4
Q ss_pred ccccccccCCCcEEEEEeecCCceeEeecCCCceeeecccc-------ceEEeeeccCCcccchhhhhhhhhhccccccc
Q 000722 2 LRLKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEH-------RQVIYELKAGGVDQRRLVGAKLEKLAEGELEH 74 (1331)
Q Consensus 2 L~l~~L~gHs~~V~~lafSPdg~~LaSgs~DGtV~VWD~~t-------g~~i~s~~~~~~~~i~~vspdg~~Lasgs~d~ 74 (1331)
+++..|.||+..|..++--.+.+-+++++.|++|++|.++. ..|..+++.| ...+..++ .|
T Consensus 726 irL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aH-kk~i~~ig----fL------- 793 (1034)
T KOG4190|consen 726 IRLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAH-KKPIHDIG----FL------- 793 (1034)
T ss_pred eeeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhc-cCccccee----ee-------
Confidence 46778999999999998888888999999999999999863 2244444422 12221111 00
Q ss_pred CCCCcccccCCceeEEeeecchhhHHHHhhhccccccCCcccccccccccCCCCCCCCceEEEEEeeccee-Eeeeeccc
Q 000722 75 KGKPTEAMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMR 153 (1331)
Q Consensus 75 ~g~~l~~l~gg~V~sVaf~DgtIrvWdl~tg~~l~~~~~~~~~~~~~~V~svafspdg~~lLasgs~d~iI-vwDl~t~~ 153 (1331)
...+.+.--|+.|.+||.-.++.+..............|.++. +-+...+++.|+....+ .+|.+...
T Consensus 794 ----------~~lr~i~ScD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~-nv~~~iliAgcsaeSTVKl~DaRsce 862 (1034)
T KOG4190|consen 794 ----------ADLRSIASCDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLE-NVDRHILIAGCSAESTVKLFDARSCE 862 (1034)
T ss_pred ----------eccceeeeccCcceeecccccchhHhhhcCcccCCCceeEecc-cCcchheeeeccchhhheeeeccccc
Confidence 1111222258999999988776654222222111122333331 12333234444555555 56877654
Q ss_pred CCC---CCccccccccceeeehhhcccCCCcceEeecCCCceeeeeehhhheeehhhcCCCccchhhhhHhhhccccEEE
Q 000722 154 GRD---IPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALL 230 (1331)
Q Consensus 154 ~~~---i~~~~~h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~~~v~~~~~gH~~~V~~vawf~~spdg~lL 230 (1331)
..+ +....+.+..++|++. .+.|++++.|-.+|.|.+.|.++|+.+..+. .-.-....++ .|....|
T Consensus 863 ~~~E~kVcna~~Pna~~R~iaV-----a~~GN~lAa~LSnGci~~LDaR~G~vINswr-pmecdllqla----apsdq~L 932 (1034)
T KOG4190|consen 863 WTCELKVCNAPGPNALTRAIAV-----ADKGNKLAAALSNGCIAILDARNGKVINSWR-PMECDLLQLA----APSDQAL 932 (1034)
T ss_pred ceeeEEeccCCCCchheeEEEe-----ccCcchhhHHhcCCcEEEEecCCCceeccCC-cccchhhhhc----CchhHHH
Confidence 322 2222445678899999 6789999999999999999999999888775 3444444443 5666788
Q ss_pred eecCCCceEEE-EeccCCCccccccccceeeeccCcEEEEEechhccCCCcEEEeecCceeEeee
Q 000722 231 VSGGSDGLLIL-WSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWD 294 (1331)
Q Consensus 231 aSgs~DgtIrV-WDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWD 294 (1331)
+....|.++.| |....+....+. +....+ ..|-. .-|+-|++......+.+|.
T Consensus 933 ~~saldHslaVnWhaldgimh~q~------kpppep---ahflq--svgpSLV~a~~Gn~lgVYa 986 (1034)
T KOG4190|consen 933 AQSALDHSLAVNWHALDGIMHLQD------KPPPEP---AHFLQ--SVGPSLVTAQNGNILGVYA 986 (1034)
T ss_pred HhhcccceeEeeehhcCCeeeecc------CCCCcc---hhhhh--ccCceeEEeccCcEEEEEe
Confidence 88889999999 977665432111 111111 11222 1456788887777888885
No 245
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.41 E-value=3e-06 Score=103.71 Aligned_cols=180 Identities=17% Similarity=0.088 Sum_probs=109.3
Q ss_pred cccccCCCCCCCCceEEEEEeec---ceeEeeeecccCCCCCccccccccceeeehhhcccCCCcceEe-ecCCCceeee
Q 000722 120 TSGFASPPPSTKGRHFLVICCVN---KAIFLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVA-FGSSDGVIRV 195 (1331)
Q Consensus 120 ~~~V~svafspdg~~lLasgs~d---~iIvwDl~t~~~~~i~~~~~h~~~V~~Vaf~P~s~Spdg~~La-sGs~DGtIrl 195 (1331)
...+.+.+|+|||+.++.+...+ .+.+||+.+++...+ ......+.+..| +|||+.|+ +.+.+|...|
T Consensus 195 ~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l---~~~~g~~~~~~~-----SPDG~~la~~~~~~g~~~I 266 (427)
T PRK02889 195 PEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVV---ANFKGSNSAPAW-----SPDGRTLAVALSRDGNSQI 266 (427)
T ss_pred CCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEe---ecCCCCccceEE-----CCCCCEEEEEEccCCCceE
Confidence 34567889999998444433222 245779887654332 222344567889 78998876 5677887777
Q ss_pred eeh--hhheeehhhcCCCccchhhhhHhhhccccEEEeecC-CCceEEEEecc--CCCccccccccceeeeccCcEEEEE
Q 000722 196 LSM--ISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGG-SDGLLILWSAD--HGQDSRELVPKLSLKAHDGGVVAVE 270 (1331)
Q Consensus 196 WDl--~t~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs-~DgtIrVWDl~--tg~~~~~~~~~~~l~gH~~~V~sva 270 (1331)
|.+ .++. ...+. .|...+.... ++|||+.|+..+ .+|...+|.+. ++.. .. .++. ........
T Consensus 267 y~~d~~~~~-~~~lt-~~~~~~~~~~---wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~-~~----lt~~--g~~~~~~~ 334 (427)
T PRK02889 267 YTVNADGSG-LRRLT-QSSGIDTEPF---FSPDGRSIYFTSDRGGAPQIYRMPASGGAA-QR----VTFT--GSYNTSPR 334 (427)
T ss_pred EEEECCCCC-cEECC-CCCCCCcCeE---EcCCCCEEEEEecCCCCcEEEEEECCCCce-EE----EecC--CCCcCceE
Confidence 765 3333 33443 3444455555 689998877554 35667777654 3321 11 1112 22334678
Q ss_pred echhccCCCcEEEeecCc---eeEeeeccchhhhcccCCCCcccccccccccCCCCCCCceee
Q 000722 271 LSRVMGGSPQLITIGADK---TLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDILT 330 (1331)
Q Consensus 271 fsp~~~dg~~LaSgs~Dg---~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg~lLa 330 (1331)
|+| ++++|+..+.++ .|.+||+.+++.. .+ ..+ .......|+|||+.|.
T Consensus 335 ~Sp---DG~~Ia~~s~~~g~~~I~v~d~~~g~~~-~l------t~~-~~~~~p~~spdg~~l~ 386 (427)
T PRK02889 335 ISP---DGKLLAYISRVGGAFKLYVQDLATGQVT-AL------TDT-TRDESPSFAPNGRYIL 386 (427)
T ss_pred ECC---CCCEEEEEEccCCcEEEEEEECCCCCeE-Ec------cCC-CCccCceECCCCCEEE
Confidence 999 888888776554 6999999877643 21 111 1235788999999663
No 246
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.34 E-value=6e-06 Score=101.30 Aligned_cols=155 Identities=12% Similarity=0.051 Sum_probs=102.4
Q ss_pred EeeeecccCCCCCccccccccceeeehhhcccCCCcceEeecCC---CceeeeeehhhheeehhhcCCCccchhhhhHhh
Q 000722 146 FLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSS---DGVIRVLSMISWKLVRRYTGGHKGSISCLMTFM 222 (1331)
Q Consensus 146 vwDl~t~~~~~i~~~~~h~~~V~~Vaf~P~s~Spdg~~LasGs~---DGtIrlWDl~t~~~v~~~~~gH~~~V~~vawf~ 222 (1331)
++|..... ...+..+...+.+..| +|||+.|+..+. +..|.+||+.+++... +. .+.+.+.+..
T Consensus 186 ~~d~dg~~---~~~lt~~~~~v~~p~w-----SpDG~~lay~s~~~g~~~i~~~dl~~g~~~~-l~-~~~g~~~~~~--- 252 (435)
T PRK05137 186 IMDQDGAN---VRYLTDGSSLVLTPRF-----SPNRQEITYMSYANGRPRVYLLDLETGQREL-VG-NFPGMTFAPR--- 252 (435)
T ss_pred EECCCCCC---cEEEecCCCCeEeeEE-----CCCCCEEEEEEecCCCCEEEEEECCCCcEEE-ee-cCCCcccCcE---
Confidence 55765432 2335566778999999 789998887653 4689999998876533 22 4555566665
Q ss_pred hccccEEEe-ecCCCce--EEEEeccCCCccccccccceeeeccCcEEEEEechhccCCCcEEEeec-Cc--eeEeeecc
Q 000722 223 ASSGEALLV-SGGSDGL--LILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGA-DK--TLAIWDTV 296 (1331)
Q Consensus 223 ~spdg~lLa-Sgs~Dgt--IrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~-Dg--~IrIWDl~ 296 (1331)
++|+|+.|+ +.+.++. |.+||+.++... .+..+........|+| +++.|+..+. +| .|.+||+.
T Consensus 253 ~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~-------~Lt~~~~~~~~~~~sp---DG~~i~f~s~~~g~~~Iy~~d~~ 322 (435)
T PRK05137 253 FSPDGRKVVMSLSQGGNTDIYTMDLRSGTTT-------RLTDSPAIDTSPSYSP---DGSQIVFESDRSGSPQLYVMNAD 322 (435)
T ss_pred ECCCCCEEEEEEecCCCceEEEEECCCCceE-------EccCCCCccCceeEcC---CCCEEEEEECCCCCCeEEEEECC
Confidence 689998764 5566655 667788776532 2344555567789999 7888876664 33 57777876
Q ss_pred chhhhcccCCCCcccccccccccCCCCCCCceee
Q 000722 297 SFKELRRIKPVPKLACHSVASWCHPRAPNLDILT 330 (1331)
Q Consensus 297 t~~~l~~~~~~~~l~~H~~~V~svafspdg~lLa 330 (1331)
+++. +. +..+...+....|+|+|+.|+
T Consensus 323 g~~~-~~------lt~~~~~~~~~~~SpdG~~ia 349 (435)
T PRK05137 323 GSNP-RR------ISFGGGRYSTPVWSPRGDLIA 349 (435)
T ss_pred CCCe-EE------eecCCCcccCeEECCCCCEEE
Confidence 5543 22 222333455678999999664
No 247
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.34 E-value=2.1e-06 Score=102.42 Aligned_cols=193 Identities=18% Similarity=0.182 Sum_probs=139.6
Q ss_pred CCcceEeecCCCceeeeeehhhheeehhhcCC-C-ccc----------------hhhhhHh-hhccccEEEeecCCCceE
Q 000722 179 GDVPLVAFGSSDGVIRVLSMISWKLVRRYTGG-H-KGS----------------ISCLMTF-MASSGEALLVSGGSDGLL 239 (1331)
Q Consensus 179 pdg~~LasGs~DGtIrlWDl~t~~~v~~~~~g-H-~~~----------------V~~vawf-~~spdg~lLaSgs~DgtI 239 (1331)
|...+++....||.+|+||..+++....|.+. | .+. ..|+.|- --+-+...++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 45789999999999999999887766555311 1 111 2222221 123455678889999999
Q ss_pred EEEeccCCCccccccccceeeeccCcEEEEEechhccCCCcEEEeecCceeEeeeccchhhhcccCCCCccccccccccc
Q 000722 240 ILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWC 319 (1331)
Q Consensus 240 rVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~s 319 (1331)
.+|++..++..+. .+-..|.+.|+++.++. +...|.|++.|+.+..|+..+++.++. ..+....+.+
T Consensus 83 ~~ys~~~g~it~~----~st~~h~~~v~~~~~~~---~~~ciyS~~ad~~v~~~~~~~~~~~~~------~~~~~~~~~s 149 (541)
T KOG4547|consen 83 LLYSVAGGEITAK----LSTDKHYGNVNEILDAQ---RLGCIYSVGADLKVVYILEKEKVIIRI------WKEQKPLVSS 149 (541)
T ss_pred EEEEecCCeEEEE----EecCCCCCcceeeeccc---ccCceEecCCceeEEEEecccceeeee------eccCCCccce
Confidence 9999998875443 23367999999999997 788999999999999999998887666 3445566778
Q ss_pred CCCCCCCcee-eeeecceeeeeecCccccccccccccccCCCccccccccceEEEEEEeccC-----CccEeeecceeEE
Q 000722 320 HPRAPNLDIL-TCVKDSHIWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSL-----QPHLVATGTNVGV 393 (1331)
Q Consensus 320 vafspdg~lL-a~s~Dg~IWdl~~~~~~~l~~~~~~~~~~~~~~~l~~h~~~~I~~la~sp~-----~~~lLAtGs~DG~ 393 (1331)
++.+||+.++ +++..-.+||+.+. .-+.+|.+|.. .|.++.|--. +.++|.+...+..
T Consensus 150 l~is~D~~~l~~as~~ik~~~~~~k---------------evv~~ftgh~s-~v~t~~f~~~~~g~~G~~vLssa~~~r~ 213 (541)
T KOG4547|consen 150 LCISPDGKILLTASRQIKVLDIETK---------------EVVITFTGHGS-PVRTLSFTTLIDGIIGKYVLSSAAAERG 213 (541)
T ss_pred EEEcCCCCEEEeccceEEEEEccCc---------------eEEEEecCCCc-ceEEEEEEEeccccccceeeeccccccc
Confidence 9999998866 67778889999875 23678999999 9999998874 2343433333333
Q ss_pred EEeecCCC
Q 000722 394 IISEFDPR 401 (1331)
Q Consensus 394 Il~VWDlr 401 (1331)
+ .+|-..
T Consensus 214 i-~~w~v~ 220 (541)
T KOG4547|consen 214 I-TVWVVE 220 (541)
T ss_pred e-eEEEEE
Confidence 3 466553
No 248
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.33 E-value=3.7e-06 Score=92.62 Aligned_cols=200 Identities=19% Similarity=0.179 Sum_probs=131.7
Q ss_pred cceeeehhhcccCCCcceEeecCCCceeeeeehhhheee--hhhcCCCccchhhhhHhhhccccEEEeecCCCceEEEEe
Q 000722 166 SLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLV--RRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWS 243 (1331)
Q Consensus 166 ~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~~~v--~~~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrVWD 243 (1331)
...++.| ++.+..++++-.+|.+.+-+....... +..+ +|.-...... | ...+.+++.+|+.|+.+..||
T Consensus 123 ~~lslD~-----~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk-~He~E~Wta~-f-~~~~pnlvytGgDD~~l~~~D 194 (339)
T KOG0280|consen 123 EALSLDI-----STSGTKIFVSDSRGSISGVYETEMVLEKVQTWK-VHEFEAWTAK-F-SDKEPNLVYTGGDDGSLSCWD 194 (339)
T ss_pred eeeEEEe-----eccCceEEEEcCCCcEEEEecceeeeeeccccc-ccceeeeeee-c-ccCCCceEEecCCCceEEEEE
Confidence 3557788 567788999999999986555444333 3555 7888877766 2 455668999999999999999
Q ss_pred ccCC-CccccccccceeeeccCcEEEEEechhccCCCcEEEeecCceeEeeeccc-hhhhcccCCCCcccccccccccCC
Q 000722 244 ADHG-QDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVS-FKELRRIKPVPKLACHSVASWCHP 321 (1331)
Q Consensus 244 l~tg-~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t-~~~l~~~~~~~~l~~H~~~V~sva 321 (1331)
++.. +.+.. ..+-|..+|.++.-+| +.+.+|++|+.|-.|++||.++ ++++.. ..-.+.||.+.
T Consensus 195 ~R~p~~~i~~-----n~kvH~~GV~SI~ss~--~~~~~I~TGsYDe~i~~~DtRnm~kPl~~-------~~v~GGVWRi~ 260 (339)
T KOG0280|consen 195 IRIPKTFIWH-----NSKVHTSGVVSIYSSP--PKPTYIATGSYDECIRVLDTRNMGKPLFK-------AKVGGGVWRIK 260 (339)
T ss_pred ecCCcceeee-----cceeeecceEEEecCC--CCCceEEEeccccceeeeehhcccCcccc-------CccccceEEEE
Confidence 9933 22221 1356899999999998 5788999999999999999984 555433 22337899999
Q ss_pred CCCCCc--ee-eeeecc-eeeeeecCccccccccccccccCCCccccccccceEEEEEEeccCCccEeeecc-eeEEEEe
Q 000722 322 RAPNLD--IL-TCVKDS-HIWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGT-NVGVIIS 396 (1331)
Q Consensus 322 fspdg~--lL-a~s~Dg-~IWdl~~~~~~~l~~~~~~~~~~~~~~~l~~h~~~~I~~la~sp~~~~lLAtGs-~DG~Il~ 396 (1331)
++|.-. +| +|-..| +|-+.+..... + + ........|.. -++.-+|... ..++||++ .|..+..
T Consensus 261 ~~p~~~~~lL~~CMh~G~ki~~~~~~~~e-----~---~--~~~~s~~~hdS-l~YG~DWd~~-~~~lATCsFYDk~~~~ 328 (339)
T KOG0280|consen 261 HHPEIFHRLLAACMHNGAKILDSSDKVLE-----F---Q--IVLPSDKIHDS-LCYGGDWDSK-DSFLATCSFYDKKIRQ 328 (339)
T ss_pred ecchhhhHHHHHHHhcCceEEEecccccc-----h---h--eeeeccccccc-eeeccccccc-cceeeeeeccccceee
Confidence 998744 44 555555 46666543111 0 0 01123344555 6777777553 44577754 3443323
Q ss_pred ecC
Q 000722 397 EFD 399 (1331)
Q Consensus 397 VWD 399 (1331)
+|-
T Consensus 329 ~Wl 331 (339)
T KOG0280|consen 329 LWL 331 (339)
T ss_pred eee
Confidence 553
No 249
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.31 E-value=1.4e-06 Score=105.49 Aligned_cols=254 Identities=13% Similarity=0.095 Sum_probs=156.2
Q ss_pred cCCCCCCCCceEEEEEeecceeEeeeecccCCCCCccccccccceeeehhhcccCCCcceEeecCCCceeeeeehhhhee
Q 000722 124 ASPPPSTKGRHFLVICCVNKAIFLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKL 203 (1331)
Q Consensus 124 ~svafspdg~~lLasgs~d~iIvwDl~t~~~~~i~~~~~h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~~~ 203 (1331)
..++|+|.-++.+...-...++++|++-.. ++.......+.+.-+.+.| .+....|+++..||.+.+|--+....
T Consensus 234 a~faf~p~~rn~lfi~~prellv~dle~~~--~l~vvpier~~akfv~vlP---~~~rd~LfclH~nG~ltirvrk~~~~ 308 (1062)
T KOG1912|consen 234 AQFAFSPHWRNILFITFPRELLVFDLEYEC--CLAVVPIERGGAKFVDVLP---DPRRDALFCLHSNGRLTIRVRKEEPT 308 (1062)
T ss_pred HhhhcChhhhceEEEEeccceEEEcchhhc--eeEEEEeccCCcceeEecc---CCCcceEEEEecCCeEEEEEeeccCc
Confidence 345788887778888888888888887533 3334445566777788887 56778899999999999996543110
Q ss_pred -----ehhhcCCCccchhhhh---Hh------hhccccEEEeecCCCceEEEEeccCCCcccc-----------------
Q 000722 204 -----VRRYTGGHKGSISCLM---TF------MASSGEALLVSGGSDGLLILWSADHGQDSRE----------------- 252 (1331)
Q Consensus 204 -----v~~~~~gH~~~V~~va---wf------~~spdg~lLaSgs~DgtIrVWDl~tg~~~~~----------------- 252 (1331)
...+...-...+.+++ -| ..+.+.+.++.--.+|.+.+|.+.+++....
T Consensus 309 ~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~ 388 (1062)
T KOG1912|consen 309 EFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDFNLS 388 (1062)
T ss_pred cccccchhhccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccccccccccccCc
Confidence 1111000001111110 00 0122233444445577788888875532110
Q ss_pred --------ccccceeeeccCcEEEEEechhc---------------cCCCcEEEeecCceeEeeeccchhhhcccCCCCc
Q 000722 253 --------LVPKLSLKAHDGGVVAVELSRVM---------------GGSPQLITIGADKTLAIWDTVSFKELRRIKPVPK 309 (1331)
Q Consensus 253 --------~~~~~~l~gH~~~V~svafsp~~---------------~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~ 309 (1331)
+.....-.+|..++++...+|.+ ..-++++.|...|+|.++|+.++..-..
T Consensus 389 ~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~~v~~~------ 462 (1062)
T KOG1912|consen 389 TKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTNAVAAS------ 462 (1062)
T ss_pred eeehhhccccchhhcCCCCCCceeeecccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEecchhhhhh------
Confidence 00011123577788887776631 1125788999999999999999886655
Q ss_pred ccccccccccCCCCCCCceeeeeecc----------e--eeeeecCccccccccccccccCCCccccccccceEEEEEEe
Q 000722 310 LACHSVASWCHPRAPNLDILTCVKDS----------H--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVA 377 (1331)
Q Consensus 310 l~~H~~~V~svafspdg~lLa~s~Dg----------~--IWdl~~~~~~~l~~~~~~~~~~~~~~~l~~h~~~~I~~la~ 377 (1331)
+..|+..|.++.|-....+++.+... . |-|++++ +...+++ +......+|..+..
T Consensus 463 fsvht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtG----lsk~fR~---------l~~~despI~~irv 529 (1062)
T KOG1912|consen 463 FSVHTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTG----LSKRFRG---------LQKPDESPIRAIRV 529 (1062)
T ss_pred hcccccceeeeeeccceeEEEeeeccccccccceeeeEEEEEcccc----ccccccc---------CCCCCcCcceeeee
Confidence 68899999999998888887543211 1 3455543 2222222 22233338888988
Q ss_pred ccCCccEeeecceeEEEEeecCCCCC
Q 000722 378 HSLQPHLVATGTNVGVIISEFDPRSL 403 (1331)
Q Consensus 378 sp~~~~lLAtGs~DG~Il~VWDlr~~ 403 (1331)
+. .+.+++..-.+.-+ .+||++..
T Consensus 530 S~-~~~yLai~Fr~~pl-Eiwd~kt~ 553 (1062)
T KOG1912|consen 530 SS-SGRYLAILFRREPL-EIWDLKTL 553 (1062)
T ss_pred cc-cCceEEEEecccch-HHHhhccc
Confidence 88 57778888888776 89998653
No 250
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.31 E-value=6.6e-06 Score=101.22 Aligned_cols=169 Identities=14% Similarity=0.041 Sum_probs=94.2
Q ss_pred CCCCCCCCceEEEEEeecc---eeEeeeecccCCCCCccccccccceeeehhhcccCCCcceEeecCC-Cc--eeeeeeh
Q 000722 125 SPPPSTKGRHFLVICCVNK---AIFLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSS-DG--VIRVLSM 198 (1331)
Q Consensus 125 svafspdg~~lLasgs~d~---iIvwDl~t~~~~~i~~~~~h~~~V~~Vaf~P~s~Spdg~~LasGs~-DG--tIrlWDl 198 (1331)
...|+|||+.++++.+.++ ++++|+.+++.+. +..+........| +||+++|+..+. ++ .|.++|+
T Consensus 266 ~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~---lt~~~~~~~~p~w-----SpDG~~I~f~s~~~g~~~Iy~~dl 337 (448)
T PRK04792 266 APRFSPDGKKLALVLSKDGQPEIYVVDIATKALTR---ITRHRAIDTEPSW-----HPDGKSLIFTSERGGKPQIYRVNL 337 (448)
T ss_pred CeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEE---CccCCCCccceEE-----CCCCCEEEEEECCCCCceEEEEEC
Confidence 4568999996666655554 4466877654332 2333445567788 789988876553 33 4666677
Q ss_pred hhheeehhhcCCCccchhhhhHhhhccccEEEeecCC-Cc--eEEEEeccCCCccccccccceeeeccCcEEEEEechhc
Q 000722 199 ISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGS-DG--LLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVM 275 (1331)
Q Consensus 199 ~t~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~-Dg--tIrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~ 275 (1331)
.+++..+....++ ...... ++|+|++|+..+. ++ .|.++|+.+++.. . +... .......|+|
T Consensus 338 ~~g~~~~Lt~~g~--~~~~~~---~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~------lt~~-~~d~~ps~sp-- 402 (448)
T PRK04792 338 ASGKVSRLTFEGE--QNLGGS---ITPDGRSMIMVNRTNGKFNIARQDLETGAMQ-V------LTST-RLDESPSVAP-- 402 (448)
T ss_pred CCCCEEEEecCCC--CCcCee---ECCCCCEEEEEEecCCceEEEEEECCCCCeE-E------ccCC-CCCCCceECC--
Confidence 6665433221122 223344 6889988766544 34 3555677666421 1 1111 1122347998
Q ss_pred cCCCcEEEee-cCce--eEeeeccchhhhcccCCCCcccccccccccCCCCC
Q 000722 276 GGSPQLITIG-ADKT--LAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAP 324 (1331)
Q Consensus 276 ~dg~~LaSgs-~Dg~--IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafsp 324 (1331)
+++.|+..+ .++. +.+++.. +...+. +..+.+.+...+|+|
T Consensus 403 -dG~~I~~~~~~~g~~~l~~~~~~-G~~~~~------l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 403 -NGTMVIYSTTYQGKQVLAAVSID-GRFKAR------LPAGQGEVKSPAWSP 446 (448)
T ss_pred -CCCEEEEEEecCCceEEEEEECC-CCceEE------CcCCCCCcCCCccCC
Confidence 677666544 3443 6666753 443333 333444556677776
No 251
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.31 E-value=0.00026 Score=86.78 Aligned_cols=166 Identities=19% Similarity=0.217 Sum_probs=118.2
Q ss_pred hccccchhHHHHHhhcccccccccCCCcccceeeeeccccchHHHHHHhhhhcccccccCCCCCCCChhhhcccccchhh
Q 000722 927 LGREHHDDLAQFMLGMGYATEALHLPGISKRLEFDLAMQSNDLKRALQCLITMSNSRDIGQDHPGLDLNDILTLTTKKEN 1006 (1331)
Q Consensus 927 i~~~~~~~~a~fl~~~g~~e~Al~~~~ds~~~~f~la~~~g~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1006 (1331)
||+- -.++=|+..=-.|.+=..+.+ .-+.|-+-+--|+++.|+.-. +-+.++
T Consensus 706 i~~~---~~~~pLrdFvgle~Cd~~TRk-aml~FSfyvtiG~MD~AfksI------~~IkS~------------------ 757 (1416)
T KOG3617|consen 706 IGKT---LVAKPLRDFVGLENCDESTRK-AMLDFSFYVTIGSMDAAFKSI------QFIKSD------------------ 757 (1416)
T ss_pred cchh---hhhhhHHHhcCccccCHHHHH-hhhceeEEEEeccHHHHHHHH------HHHhhh------------------
Confidence 5654 244445444445666667777 688899999999999999988 555555
Q ss_pred HHHHHHHHHHHHHHHHhhhhccccccchHHHHHHHHHHHhcccccccccccccccchhhhcccccchhhhhhhHHHHhhc
Q 000722 1007 IVEAVQGIVKFAKEFLDLIDAADATGQANIAREALKRLAAAGSVKGALQGHELRGLALRLANHGELTRLSGLVTNLISLG 1086 (1331)
Q Consensus 1007 ~~~~~~~~~~~~~~w~~l~~~al~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~ll~~~~g~~~~l~~l~~~~~~~~ 1086 (1331)
..|..++..+..+.++|.|.-|+-+.++..++ +-++..--.|+ +.=.|.+-.|.+-|
T Consensus 758 ------------~vW~nmA~McVkT~RLDVAkVClGhm~~aRga----------RAlR~a~q~~~-e~eakvAvLAieLg 814 (1416)
T KOG3617|consen 758 ------------SVWDNMASMCVKTRRLDVAKVCLGHMKNARGA----------RALRRAQQNGE-EDEAKVAVLAIELG 814 (1416)
T ss_pred ------------HHHHHHHHHhhhhccccHHHHhhhhhhhhhhH----------HHHHHHHhCCc-chhhHHHHHHHHHh
Confidence 89999999999999999999999998644421 11122222333 44455566677777
Q ss_pred cChhhhhhhh-hcCchHHHHHHhhhhhhHHHHHHhhhccCCCcHHHHHHHHHHHHhhhc
Q 000722 1087 LGREAAFSAA-ILGDNALMEKAWQDTGMLAEAVLHAHAHGRPSLKNLVEAWNKMLQKEV 1144 (1331)
Q Consensus 1087 ~~~~~af~~~-~lgd~~~~~~~l~~~~~~~~A~~~A~~~~~~~~~~~~~~w~~~l~~~~ 1144 (1331)
-. +-|...+ .....+..-|+|+..||+.||.-.|-++-+=+++.---..-+.|....
T Consensus 815 Ml-EeA~~lYr~ckR~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~ 872 (1416)
T KOG3617|consen 815 ML-EEALILYRQCKRYDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARR 872 (1416)
T ss_pred hH-HHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhc
Confidence 66 5566655 666677777888999999999999999998887776666666665443
No 252
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.30 E-value=7.4e-06 Score=91.93 Aligned_cols=204 Identities=14% Similarity=0.247 Sum_probs=139.4
Q ss_pred cccccCCCCCCCCceEEEEEeeccee-Ee-eeecccCCCCCccccccccceeeehhhcccCCCcceEeecCCCceeeeee
Q 000722 120 TSGFASPPPSTKGRHFLVICCVNKAI-FL-DLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLS 197 (1331)
Q Consensus 120 ~~~V~svafspdg~~lLasgs~d~iI-vw-Dl~t~~~~~i~~~~~h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWD 197 (1331)
.+.++....-|..+ -+++.++|..+ +| ..+.++... .........++++.+ .++...|++|-..|++.-+.
T Consensus 24 ~d~vn~~~l~~~e~-gv~~~s~drtvrv~lkrds~q~wp-sI~~~mP~~~~~~~y-----~~e~~~L~vg~~ngtvtefs 96 (404)
T KOG1409|consen 24 QDDVNAAILIPKEE-GVISVSEDRTVRVWLKRDSGQYWP-SIYHYMPSPCSAMEY-----VSESRRLYVGQDNGTVTEFA 96 (404)
T ss_pred hhhhhhheeccCCC-CeEEccccceeeeEEeccccccCc-hhhhhCCCCceEeee-----eccceEEEEEEecceEEEEE
Confidence 34455555555554 56778888877 56 555544322 112333678899999 56788999999999998886
Q ss_pred hh----hheeehhhcCCCccchhhhhHhhhccccEEEeecCCCceEEEEeccCCCc------------------------
Q 000722 198 MI----SWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQD------------------------ 249 (1331)
Q Consensus 198 l~----t~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrVWDl~tg~~------------------------ 249 (1331)
+. .....+... .|...|+.+- |+....++++.+.|..+.---.+.+..
T Consensus 97 ~sedfnkm~~~r~~~-~h~~~v~~~i---f~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd 172 (404)
T KOG1409|consen 97 LSEDFNKMTFLKDYL-AHQARVSAIV---FSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGD 172 (404)
T ss_pred hhhhhhhcchhhhhh-hhhcceeeEE---ecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEecc
Confidence 64 234445555 7888888875 566667888888776653211111100
Q ss_pred -----------cccccccceeeeccCcEEEEEechhccCCCcEEEeecCceeEeeeccchhhhcccCCCCcccccccccc
Q 000722 250 -----------SRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASW 318 (1331)
Q Consensus 250 -----------~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~ 318 (1331)
.....+..++.+|.+.+.++.|.+ ...+|.+|..|..+.+||+...+.+. ..+.+|.+.|.
T Consensus 173 ~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~---~~~~LfSg~~d~~vi~wdigg~~g~~-----~el~gh~~kV~ 244 (404)
T KOG1409|consen 173 HSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDP---GQRLLFSGASDHSVIMWDIGGRKGTA-----YELQGHNDKVQ 244 (404)
T ss_pred cccceEEEEEeecCCceEEEEcCcccceEEEEEcC---CCcEEEeccccCceEEEeccCCccee-----eeeccchhhhh
Confidence 011234456789999999999999 78899999999999999997655332 23678999888
Q ss_pred cCCCCCCCc-eeeeeecce--eeeeec
Q 000722 319 CHPRAPNLD-ILTCVKDSH--IWAIEH 342 (1331)
Q Consensus 319 svafspdg~-lLa~s~Dg~--IWdl~~ 342 (1331)
.+..-+.-+ +++++.|+. +|+++.
T Consensus 245 ~l~~~~~t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 245 ALSYAQHTRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred hhhhhhhheeeeeccCCCeEEEEeccc
Confidence 887766544 668999996 688764
No 253
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.29 E-value=9.7e-06 Score=99.28 Aligned_cols=169 Identities=14% Similarity=0.025 Sum_probs=94.0
Q ss_pred CCCCCCCCceEEEEEeecc---eeEeeeecccCCCCCccccccccceeeehhhcccCCCcceEeecCC-Cc--eeeeeeh
Q 000722 125 SPPPSTKGRHFLVICCVNK---AIFLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSS-DG--VIRVLSM 198 (1331)
Q Consensus 125 svafspdg~~lLasgs~d~---iIvwDl~t~~~~~i~~~~~h~~~V~~Vaf~P~s~Spdg~~LasGs~-DG--tIrlWDl 198 (1331)
...|+|||+.++++...++ +.+||..+++... +..+........| +|+|+.|+..+. +| .|.++|+
T Consensus 247 ~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~---lt~~~~~~~~~~~-----spDg~~i~f~s~~~g~~~iy~~d~ 318 (430)
T PRK00178 247 APAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSR---VTNHPAIDTEPFW-----GKDGRTLYFTSDRGGKPQIYKVNV 318 (430)
T ss_pred CeEECCCCCEEEEEEccCCCceEEEEECCCCCeEE---cccCCCCcCCeEE-----CCCCCEEEEEECCCCCceEEEEEC
Confidence 4668999986655554443 4466887754332 2333444556778 789988776553 33 5777787
Q ss_pred hhheeehhhcCCCccchhhhhHhhhccccEEEeecCC-Cc--eEEEEeccCCCccccccccceeeeccCcEEEEEechhc
Q 000722 199 ISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGS-DG--LLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVM 275 (1331)
Q Consensus 199 ~t~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~-Dg--tIrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~ 275 (1331)
.+++..+....+ ....... ++|+|+.|+..+. ++ .|.+||+.+++.. . +. +........|+|
T Consensus 319 ~~g~~~~lt~~~--~~~~~~~---~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~-~------lt-~~~~~~~p~~sp-- 383 (430)
T PRK00178 319 NGGRAERVTFVG--NYNARPR---LSADGKTLVMVHRQDGNFHVAAQDLQRGSVR-I------LT-DTSLDESPSVAP-- 383 (430)
T ss_pred CCCCEEEeecCC--CCccceE---ECCCCCEEEEEEccCCceEEEEEECCCCCEE-E------cc-CCCCCCCceECC--
Confidence 766543322212 1222233 5889988876554 33 5788898876531 1 11 111122458999
Q ss_pred cCCCcEEEeec-Cc--eeEeeeccchhhhcccCCCCcccccccccccCCCCC
Q 000722 276 GGSPQLITIGA-DK--TLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAP 324 (1331)
Q Consensus 276 ~dg~~LaSgs~-Dg--~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafsp 324 (1331)
+++.++..+. ++ .|.+++... ...+. +..+.+.+...+|+|
T Consensus 384 -dg~~i~~~~~~~g~~~l~~~~~~g-~~~~~------l~~~~g~~~~p~ws~ 427 (430)
T PRK00178 384 -NGTMLIYATRQQGRGVLMLVSING-RVRLP------LPTAQGEVREPSWSP 427 (430)
T ss_pred -CCCEEEEEEecCCceEEEEEECCC-CceEE------CcCCCCCcCCCccCC
Confidence 7777766554 33 455666543 22222 223334455566665
No 254
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=98.28 E-value=2e-06 Score=93.63 Aligned_cols=116 Identities=16% Similarity=0.163 Sum_probs=79.7
Q ss_pred eeeeeehhh-heeehhhcCCCccchhhhhHhhhccccEEEe--ecCCCceEEEEeccCCCccccccccceeeeccCcEEE
Q 000722 192 VIRVLSMIS-WKLVRRYTGGHKGSISCLMTFMASSGEALLV--SGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVA 268 (1331)
Q Consensus 192 tIrlWDl~t-~~~v~~~~~gH~~~V~~vawf~~spdg~lLa--Sgs~DgtIrVWDl~tg~~~~~~~~~~~l~gH~~~V~s 268 (1331)
...||.++. ...+..+.....+.|.+++ .+|+|+.|+ .|..++.|.+||++ ++.+ ..+ +...++.
T Consensus 38 ~~~l~~~~~~~~~~~~i~l~~~~~I~~~~---WsP~g~~favi~g~~~~~v~lyd~~-~~~i------~~~--~~~~~n~ 105 (194)
T PF08662_consen 38 EFELFYLNEKNIPVESIELKKEGPIHDVA---WSPNGNEFAVIYGSMPAKVTLYDVK-GKKI------FSF--GTQPRNT 105 (194)
T ss_pred eEEEEEEecCCCccceeeccCCCceEEEE---ECcCCCEEEEEEccCCcccEEEcCc-ccEe------Eee--cCCCceE
Confidence 345555532 2333344323456799998 488888764 35567899999996 3322 223 3567889
Q ss_pred EEechhccCCCcEEEeec---CceeEeeeccchhhhcccCCCCcccccccccccCCCCCCCceee
Q 000722 269 VELSRVMGGSPQLITIGA---DKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDILT 330 (1331)
Q Consensus 269 vafsp~~~dg~~LaSgs~---Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg~lLa 330 (1331)
+.|+| +|++|++++. .|.|.+||.++.+.+.+. .| ..+..+.|+|+|++++
T Consensus 106 i~wsP---~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~-------~~-~~~t~~~WsPdGr~~~ 159 (194)
T PF08662_consen 106 ISWSP---DGRFLVLAGFGNLNGDLEFWDVRKKKKISTF-------EH-SDATDVEWSPDGRYLA 159 (194)
T ss_pred EEECC---CCCEEEEEEccCCCcEEEEEECCCCEEeecc-------cc-CcEEEEEEcCCCCEEE
Confidence 99999 8999999875 467999999987776552 22 2356899999999774
No 255
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.28 E-value=3.1e-06 Score=96.97 Aligned_cols=164 Identities=18% Similarity=0.151 Sum_probs=109.9
Q ss_pred ccCCCCCCCCceEEEEEeeccee-EeeeecccC--CCCCccccccccceeeehhhcccCCCcceEeecCCCceeeeeehh
Q 000722 123 FASPPPSTKGRHFLVICCVNKAI-FLDLVTMRG--RDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMI 199 (1331)
Q Consensus 123 V~svafspdg~~lLasgs~d~iI-vwDl~t~~~--~~i~~~~~h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~ 199 (1331)
...+..++.++ +++++..++.. ++++..... +.+..... ....+.+.|... +......-..++...+.+|...
T Consensus 65 ~~~~~~s~~~~-llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v-~~~~~ai~~~~~--~~sv~v~dkagD~~~~di~s~~ 140 (390)
T KOG3914|consen 65 PALVLTSDSGR-LVAVATSSKQRAVFDYRENPKGAKLLDVSCV-PKRPTAISFIRE--DTSVLVADKAGDVYSFDILSAD 140 (390)
T ss_pred ccccccCCCce-EEEEEeCCCceEEEEEecCCCcceeeeEeec-ccCcceeeeeec--cceEEEEeecCCceeeeeeccc
Confidence 34456778887 77766665554 666654321 11111111 122233333110 2222233344566777788776
Q ss_pred hheeehhhcCCCccchhhhhHhhhccccEEEeecCCCceEEEEeccCCCccccccccceeeeccCcEEEEEechhccCCC
Q 000722 200 SWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSP 279 (1331)
Q Consensus 200 t~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~ 279 (1331)
.+.+...+ ||-.-++.++ ++||+.+|+++..|..|||-.......+..+ +-||..-|..++.-+ +.
T Consensus 141 ~~~~~~~l--GhvSml~dVa---vS~D~~~IitaDRDEkIRvs~ypa~f~Iesf-----clGH~eFVS~isl~~----~~ 206 (390)
T KOG3914|consen 141 SGRCEPIL--GHVSMLLDVA---VSPDDQFIITADRDEKIRVSRYPATFVIESF-----CLGHKEFVSTISLTD----NY 206 (390)
T ss_pred ccCcchhh--hhhhhhheee---ecCCCCEEEEecCCceEEEEecCcccchhhh-----ccccHhheeeeeecc----Cc
Confidence 65555444 8999999998 7999999999999999999877655444433 578999999999986 45
Q ss_pred cEEEeecCceeEeeeccchhhhccc
Q 000722 280 QLITIGADKTLAIWDTVSFKELRRI 304 (1331)
Q Consensus 280 ~LaSgs~Dg~IrIWDl~t~~~l~~~ 304 (1331)
.|+|+|.|++|++||+.+|+++.++
T Consensus 207 ~LlS~sGD~tlr~Wd~~sgk~L~t~ 231 (390)
T KOG3914|consen 207 LLLSGSGDKTLRLWDITSGKLLDTC 231 (390)
T ss_pred eeeecCCCCcEEEEecccCCccccc
Confidence 6999999999999999999988663
No 256
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.28 E-value=1.3e-06 Score=104.25 Aligned_cols=318 Identities=13% Similarity=0.066 Sum_probs=162.9
Q ss_pred eeEeecCCCceeeeccccceEEeeeccCC-cccchhhhhhhhhhcccccccCCCCcccccCCceeEEeeecchhhHHHHh
Q 000722 25 WLVTADASDHVSVWNWEHRQVIYELKAGG-VDQRRLVGAKLEKLAEGELEHKGKPTEAMRGGSVKQVNFYDDDVRFWQLW 103 (1331)
Q Consensus 25 ~LaSgs~DGtV~VWD~~tg~~i~s~~~~~-~~~i~~vspdg~~Lasgs~d~~g~~l~~l~gg~V~sVaf~DgtIrvWdl~ 103 (1331)
++++-..++.|.|.|..+.+.+.++..++ .+.....+++++++...+ .|+.|.++|+.
T Consensus 8 ~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~---------------------rdg~vsviD~~ 66 (369)
T PF02239_consen 8 FYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVAN---------------------RDGTVSVIDLA 66 (369)
T ss_dssp EEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEE---------------------TTSEEEEEETT
T ss_pred EEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEc---------------------CCCeEEEEECC
Confidence 34566678999999999999999998543 223233446666554432 47888899988
Q ss_pred hhccccccCCcccccccccccCCCCCCCCceEEEEEeeccee-EeeeecccCCCCCcccc-------ccccceeeehhhc
Q 000722 104 RNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQEL-------DNKSLVCMEFLSR 175 (1331)
Q Consensus 104 tg~~l~~~~~~~~~~~~~~V~svafspdg~~lLasgs~d~iI-vwDl~t~~~~~i~~~~~-------h~~~V~~Vaf~P~ 175 (1331)
+.+.+... .. .....++++++||+.+++++...+.+ ++|.++.+.. ..... ....+..+..
T Consensus 67 ~~~~v~~i-~~-----G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v--~~I~~~~~~~~~~~~Rv~aIv~--- 135 (369)
T PF02239_consen 67 TGKVVATI-KV-----GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPV--KTIPTGGMPVDGPESRVAAIVA--- 135 (369)
T ss_dssp SSSEEEEE-E------SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EE--EEEE--EE-TTTS---EEEEEE---
T ss_pred cccEEEEE-ec-----CCCcceEEEcCCCCEEEEEecCCCceeEeccccccce--eecccccccccccCCCceeEEe---
Confidence 88754211 11 12235688899999666666666655 7798875432 11111 2335556666
Q ss_pred ccCCCcc-eEeecCCCceeeeeehhhheeehhhcCCCccchhhhhHhhhccccEEEee-cCCCceEEEEeccCCCccccc
Q 000722 176 SAVGDVP-LVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVS-GGSDGLLILWSADHGQDSREL 253 (1331)
Q Consensus 176 s~Spdg~-~LasGs~DGtIrlWDl~t~~~v~~~~~gH~~~V~~vawf~~spdg~lLaS-gs~DgtIrVWDl~tg~~~~~~ 253 (1331)
++..+ ++++--+.+.|-+.|....+.+..-............ ++|++++++. ...++.|-++|..+++.+..+
T Consensus 136 --s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~---~dpdgry~~va~~~sn~i~viD~~~~k~v~~i 210 (369)
T PF02239_consen 136 --SPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGG---FDPDGRYFLVAANGSNKIAVIDTKTGKLVALI 210 (369)
T ss_dssp ---SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEE---E-TTSSEEEEEEGGGTEEEEEETTTTEEEEEE
T ss_pred --cCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccc---cCcccceeeecccccceeEEEeeccceEEEEe
Confidence 45566 5555555688888887654332211001112222332 6888887655 456779999999887654321
Q ss_pred cccceeeeccCcEEEE-------EechhccCCCcEEEeecCceeEeeeccchhhhcccCCCCcccccccccccCCCCCCC
Q 000722 254 VPKLSLKAHDGGVVAV-------ELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNL 326 (1331)
Q Consensus 254 ~~~~~l~gH~~~V~sv-------afsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg 326 (1331)
..- -..|..++..+ .|... ..+...++.-....+.+||..+++.++++ ...... ..+..||++
T Consensus 211 ~~g--~~p~~~~~~~~php~~g~vw~~~-~~~~~~~~~ig~~~v~v~d~~~wkvv~~I------~~~G~g-lFi~thP~s 280 (369)
T PF02239_consen 211 DTG--KKPHPGPGANFPHPGFGPVWATS-GLGYFAIPLIGTDPVSVHDDYAWKVVKTI------PTQGGG-LFIKTHPDS 280 (369)
T ss_dssp E-S--SSBEETTEEEEEETTTEEEEEEE-BSSSSEEEEEE--TTT-STTTBTSEEEEE------E-SSSS---EE--TT-
T ss_pred ecc--ccccccccccccCCCcceEEeec-cccceecccccCCccccchhhcCeEEEEE------ECCCCc-ceeecCCCC
Confidence 100 12233333222 12211 12334434444456778998888887773 333444 467779999
Q ss_pred ceeeee----ec-ce--eeeeecCccccccccccccccCCCccccccccceEEEEEEeccCCccEeeecceeE-EEEeec
Q 000722 327 DILTCV----KD-SH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVG-VIISEF 398 (1331)
Q Consensus 327 ~lLa~s----~D-g~--IWdl~~~~~~~l~~~~~~~~~~~~~~~l~~h~~~~I~~la~sp~~~~lLAtGs~DG-~Il~VW 398 (1331)
+++-.. .+ .+ |+|..+.. ....+......++..+.|++++..+.++..+.+ .| .+|
T Consensus 281 ~~vwvd~~~~~~~~~v~viD~~tl~---------------~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i-~v~ 344 (369)
T PF02239_consen 281 RYVWVDTFLNPDADTVQVIDKKTLK---------------VVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAI-VVY 344 (369)
T ss_dssp SEEEEE-TT-SSHT-EEEEECCGTE---------------EEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEE-EEE
T ss_pred ccEEeeccCCCCCceEEEEECcCcc---------------eeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEE-EEE
Confidence 977332 33 23 56666431 111222222225889999997665555544444 66 589
Q ss_pred CCCCCCC
Q 000722 399 DPRSLPA 405 (1331)
Q Consensus 399 Dlr~~p~ 405 (1331)
|..+...
T Consensus 345 D~~Tl~~ 351 (369)
T PF02239_consen 345 DAKTLKE 351 (369)
T ss_dssp ETTTTEE
T ss_pred ECCCcEE
Confidence 8765433
No 257
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.27 E-value=2e-06 Score=98.49 Aligned_cols=116 Identities=19% Similarity=0.189 Sum_probs=85.4
Q ss_pred CCCCCceEEEEEeecceeEeeeecccCCCCCccccccccceeeehhhcccCCCcceEeecCCCceeeeeehhhheeehhh
Q 000722 128 PSTKGRHFLVICCVNKAIFLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRY 207 (1331)
Q Consensus 128 fspdg~~lLasgs~d~iIvwDl~t~~~~~i~~~~~h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~~~v~~~ 207 (1331)
|..+....+++-..+..+.+|.......+.....+|-.-++.|+| +||+++|+++..|..||+-....-..+..|
T Consensus 115 ~~~~~~sv~v~dkagD~~~~di~s~~~~~~~~~lGhvSml~dVav-----S~D~~~IitaDRDEkIRvs~ypa~f~Iesf 189 (390)
T KOG3914|consen 115 FIREDTSVLVADKAGDVYSFDILSADSGRCEPILGHVSMLLDVAV-----SPDDQFIITADRDEKIRVSRYPATFVIESF 189 (390)
T ss_pred eeeccceEEEEeecCCceeeeeecccccCcchhhhhhhhhheeee-----cCCCCEEEEecCCceEEEEecCcccchhhh
Confidence 333333344544444444443332110122345789999999999 789999999999999999888777777888
Q ss_pred cCCCccchhhhhHhhhccccEEEeecCCCceEEEEeccCCCcccc
Q 000722 208 TGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRE 252 (1331)
Q Consensus 208 ~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrVWDl~tg~~~~~ 252 (1331)
..||+..|..++ .- ++..|+|||.|+++++||+.+|+++++
T Consensus 190 clGH~eFVS~is---l~-~~~~LlS~sGD~tlr~Wd~~sgk~L~t 230 (390)
T KOG3914|consen 190 CLGHKEFVSTIS---LT-DNYLLLSGSGDKTLRLWDITSGKLLDT 230 (390)
T ss_pred ccccHhheeeee---ec-cCceeeecCCCCcEEEEecccCCcccc
Confidence 779999999987 33 455799999999999999999987654
No 258
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.26 E-value=1.1e-06 Score=114.16 Aligned_cols=196 Identities=17% Similarity=0.248 Sum_probs=146.9
Q ss_pred cccccceeeehhhcccCCCcceEeecCCCceeeeeehhhheeehhhcCCCccchhhhhHhhhccccEEEeecCCCceEEE
Q 000722 162 LDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLIL 241 (1331)
Q Consensus 162 ~h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrV 241 (1331)
.+-..|.++.- +|...+-++|+.||.|++|.+..++.+..+..+.+..|+.+. |+..|+.+..+..||.+.+
T Consensus 2206 ~~v~~v~r~~s-----Hp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~---f~~qGnk~~i~d~dg~l~l 2277 (2439)
T KOG1064|consen 2206 HPVENVRRMTS-----HPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSR---FNHQGNKFGIVDGDGDLSL 2277 (2439)
T ss_pred cccCceeeecC-----CCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhh---hcccCCceeeeccCCceee
Confidence 34556777777 457889999999999999999988888777655568888886 7889999999999999999
Q ss_pred EeccCCCccccccccceeeeccCcEEEEEechhccCCCcEEEee---cCceeEeeeccchhhhcccCCCCcccccccccc
Q 000722 242 WSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIG---ADKTLAIWDTVSFKELRRIKPVPKLACHSVASW 318 (1331)
Q Consensus 242 WDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs---~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~ 318 (1331)
|.... .+....+.|+...+.+.|-. ..+++.+ +++.+.+||..-..... .+ -..|...++
T Consensus 2278 ~q~~p-------k~~~s~qchnk~~~Df~Fi~-----s~~~tag~s~d~~n~~lwDtl~~~~~s---~v--~~~H~~gaT 2340 (2439)
T KOG1064|consen 2278 WQASP-------KPYTSWQCHNKALSDFRFIG-----SLLATAGRSSDNRNVCLWDTLLPPMNS---LV--HTCHDGGAT 2340 (2439)
T ss_pred cccCC-------cceeccccCCccccceeeee-----hhhhccccCCCCCcccchhcccCcccc---ee--eeecCCCce
Confidence 99872 23445688998888888863 5677665 58899999965322111 11 278999999
Q ss_pred cCCCCCCCce-eeeeecce--eeeeecCccccccccccccccCCCccccccccceEEEEEEeccCCccEeeecceeEEEE
Q 000722 319 CHPRAPNLDI-LTCVKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVII 395 (1331)
Q Consensus 319 svafspdg~l-La~s~Dg~--IWdl~~~~~~~l~~~~~~~~~~~~~~~l~~h~~~~I~~la~sp~~~~lLAtGs~DG~Il 395 (1331)
++++-|..++ |+||.+|. |||++.++. ..++ . . ++ ...++++|+..|.+
T Consensus 2341 ~l~~~P~~qllisggr~G~v~l~D~rqrql---------------~h~~----~--~----~~--~~~~f~~~ss~g~i- 2392 (2439)
T KOG1064|consen 2341 VLAYAPKHQLLISGGRKGEVCLFDIRQRQL---------------RHTF----Q--A----LD--TREYFVTGSSEGNI- 2392 (2439)
T ss_pred EEEEcCcceEEEecCCcCcEEEeehHHHHH---------------HHHh----h--h----hh--hhheeeccCcccce-
Confidence 9999999885 58999995 899986422 1111 1 1 22 24569999999998
Q ss_pred eecCCCCCCCCCCCC
Q 000722 396 SEFDPRSLPAVAPLP 410 (1331)
Q Consensus 396 ~VWDlr~~p~i~~~~ 410 (1331)
+||++.....+.++|
T Consensus 2393 kIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2393 KIWRLSEFGLLHTFP 2407 (2439)
T ss_pred EEEEccccchhhcCc
Confidence 999998765555554
No 259
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.26 E-value=7.4e-06 Score=88.93 Aligned_cols=198 Identities=20% Similarity=0.245 Sum_probs=111.5
Q ss_pred CcceEeecCCCceeeeeehhhheee-hhhcCCCccchhhhhHhhhccccEEEeecCCCce------EEEEeccCCCcccc
Q 000722 180 DVPLVAFGSSDGVIRVLSMISWKLV-RRYTGGHKGSISCLMTFMASSGEALLVSGGSDGL------LILWSADHGQDSRE 252 (1331)
Q Consensus 180 dg~~LasGs~DGtIrlWDl~t~~~v-~~~~~gH~~~V~~vawf~~spdg~lLaSgs~Dgt------IrVWDl~tg~~~~~ 252 (1331)
.+..++++..||.+.+++.+.-..+ ..+...|.+. .+.+ .-..++++.++. -|. .+.|+++..+.+
T Consensus 100 ~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~-as~~---~~~~~~~i~s~~-~g~~n~~d~~~a~~~~p~~t~-- 172 (319)
T KOG4714|consen 100 TDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGS-ASRK---ICRHGNSILSGG-CGNWNAQDNFYANTLDPIKTL-- 172 (319)
T ss_pred cCCceEecCCCceEEEEechHHHhhhhhcccccccc-cccc---eeecccEEecCC-cceEeeccceeeecccccccc--
Confidence 4667999999999999998752111 1111112111 1111 112344444432 222 333444322211
Q ss_pred ccccceeeeccCcEEEEEechhccCCCcEEEeecCceeEeeeccchhhhcccCCCCcccccccccccCCCCCCCc--eee
Q 000722 253 LVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLD--ILT 330 (1331)
Q Consensus 253 ~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg~--lLa 330 (1331)
.+ -..-...|.+++-||. ...++++|++||.+-+||.+.... +...+..|...++-+-|||... +++
T Consensus 173 -~~---~~~~~~~v~~l~~hp~--qq~~v~cgt~dg~~~l~d~rn~~~-----p~S~l~ahk~~i~eV~FHpk~p~~Lft 241 (319)
T KOG4714|consen 173 -IP---SKKALDAVTALCSHPA--QQHLVCCGTDDGIVGLWDARNVAM-----PVSLLKAHKAEIWEVHFHPKNPEHLFT 241 (319)
T ss_pred -cc---cccccccchhhhCCcc--cccEEEEecCCCeEEEEEcccccc-----hHHHHHHhhhhhhheeccCCCchheeE
Confidence 00 0111234999999993 567888899999999999997743 2334789999999999999754 889
Q ss_pred eeecceeeeeecCc-ccccc-----ccccc----cccCCCccccccccceEEEEEEeccCCccEeeecceeEEEEeecC
Q 000722 331 CVKDSHIWAIEHPT-YSALT-----RPLCE----LSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFD 399 (1331)
Q Consensus 331 ~s~Dg~IWdl~~~~-~~~l~-----~~~~~----~~~~~~~~~l~~h~~~~I~~la~sp~~~~lLAtGs~DG~Il~VWD 399 (1331)
+++||.+|.+...+ ..... ...|- .++...+..+.......|+++.... -.|++|++-+.| ++.+
T Consensus 242 ~sedGslw~wdas~~~l~i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfDV~g---~~lVcgtd~eaI-yl~~ 316 (319)
T KOG4714|consen 242 CSEDGSLWHWDASTTFLSISNQASVISSWLSGDPVKSRIEITSLLPSRSLSINSFDVLG---PCLVCGTDAEAI-YLTR 316 (319)
T ss_pred ecCCCcEEEEcCCCceEEecCccccccccccCCcccceEeeeccccccceeeeeeeccC---ceEEeccccceE-EEec
Confidence 99999987766431 11111 01110 1111122222333333566666553 258888888876 5543
No 260
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.26 E-value=1.8e-06 Score=96.62 Aligned_cols=153 Identities=16% Similarity=0.210 Sum_probs=113.5
Q ss_pred EEEEeecceeEeeeecccCCCCCccccccccceeeehhhcccCCCcceEeecCCCceeeeeehhhh-----eeehhhcCC
Q 000722 136 LVICCVNKAIFLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISW-----KLVRRYTGG 210 (1331)
Q Consensus 136 Lasgs~d~iIvwDl~t~~~~~i~~~~~h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~-----~~v~~~~~g 210 (1331)
+.+|.+.++.+.|+.++..+.. .....|.++.| ...++++..|+.+|.|..+|++.+ .+...+ -
T Consensus 228 fs~G~sqqv~L~nvetg~~qsf----~sksDVfAlQf-----~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl--y 296 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQSF----QSKSDVFALQF-----AGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL--Y 296 (425)
T ss_pred ecccccceeEEEEeeccccccc----ccchhHHHHHh-----cccCCeeEecccCCcEEEEEeeecccCCCcceEEE--E
Confidence 5666666677779998754332 24678899999 566899999999999999999864 344455 4
Q ss_pred CccchhhhhHhhhccccEEEeecCCCceEEEEeccCCCccccccccceeeeccCcEEEEEechhccCCCcEEEeecCcee
Q 000722 211 HKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTL 290 (1331)
Q Consensus 211 H~~~V~~vawf~~spdg~lLaSgs~DgtIrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~I 290 (1331)
|...|+|+.. ..-++.+|++.+.+|+|++||.+.-++-. .+.++.||...-.-+-++- ++....++++|+|...
T Consensus 297 h~Ssvtslq~--Lq~s~q~LmaS~M~gkikLyD~R~~K~~~---~V~qYeGHvN~~a~l~~~v-~~eeg~I~s~GdDcyt 370 (425)
T KOG2695|consen 297 HDSSVTSLQI--LQFSQQKLMASDMTGKIKLYDLRATKCKK---SVMQYEGHVNLSAYLPAHV-KEEEGSIFSVGDDCYT 370 (425)
T ss_pred cCcchhhhhh--hccccceEeeccCcCceeEeeehhhhccc---ceeeeeccccccccccccc-ccccceEEEccCeeEE
Confidence 9999999983 34477889999999999999998766522 2334678854433333332 1356788899999999
Q ss_pred EeeeccchhhhcccC
Q 000722 291 AIWDTVSFKELRRIK 305 (1331)
Q Consensus 291 rIWDl~t~~~l~~~~ 305 (1331)
|||.++.+..+.++.
T Consensus 371 RiWsl~~ghLl~tip 385 (425)
T KOG2695|consen 371 RIWSLDSGHLLCTIP 385 (425)
T ss_pred EEEecccCceeeccC
Confidence 999999999887743
No 261
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.25 E-value=2.1e-06 Score=94.56 Aligned_cols=183 Identities=13% Similarity=0.090 Sum_probs=121.8
Q ss_pred cCCCCCCCCceEEEEEeecceeEeeeecccCCCCCccccccccceeeehhhcccCCCcceEeecCCCceeeeeehh-hhe
Q 000722 124 ASPPPSTKGRHFLVICCVNKAIFLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMI-SWK 202 (1331)
Q Consensus 124 ~svafspdg~~lLasgs~d~iIvwDl~t~~~~~i~~~~~h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~-t~~ 202 (1331)
.++.|++.+..++++-+.+.+...+...+..+.+...+.|.-+.....|. ..+.+++.+|++|+.+..||++ .++
T Consensus 125 lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~----~~~pnlvytGgDD~~l~~~D~R~p~~ 200 (339)
T KOG0280|consen 125 LSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFS----DKEPNLVYTGGDDGSLSCWDIRIPKT 200 (339)
T ss_pred eEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecc----cCCCceEEecCCCceEEEEEecCCcc
Confidence 35667887875555544444444555555555666788999888888895 3455799999999999999998 344
Q ss_pred eehhhcCCCccchhhhhHhhhccccEEEeecCCCceEEEEeccC-CCccccccccceeeeccCcEEEEEechhccCCCcE
Q 000722 203 LVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADH-GQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQL 281 (1331)
Q Consensus 203 ~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrVWDl~t-g~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~L 281 (1331)
.+..-..-|...|.+|. ...|.+..+++|+.|-.|++||.++ ++.+.. ..-.++|+.+.++|. ....+
T Consensus 201 ~i~~n~kvH~~GV~SI~--ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~-------~~v~GGVWRi~~~p~--~~~~l 269 (339)
T KOG0280|consen 201 FIWHNSKVHTSGVVSIY--SSPPKPTYIATGSYDECIRVLDTRNMGKPLFK-------AKVGGGVWRIKHHPE--IFHRL 269 (339)
T ss_pred eeeecceeeecceEEEe--cCCCCCceEEEeccccceeeeehhcccCcccc-------CccccceEEEEecch--hhhHH
Confidence 44432236899999996 3567788999999999999999984 444332 223478999999994 33444
Q ss_pred EEeecCceeEeeeccchhhhcccCCCCcccccccccccCCC
Q 000722 282 ITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPR 322 (1331)
Q Consensus 282 aSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svaf 322 (1331)
+.++.-+-.+|-+++.+..-.. ........|..-+..-.|
T Consensus 270 L~~CMh~G~ki~~~~~~~~e~~-~~~~s~~~hdSl~YG~DW 309 (339)
T KOG0280|consen 270 LAACMHNGAKILDSSDKVLEFQ-IVLPSDKIHDSLCYGGDW 309 (339)
T ss_pred HHHHHhcCceEEEecccccchh-eeeeccccccceeecccc
Confidence 5555555567777765432200 011123455555555555
No 262
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.25 E-value=8.4e-07 Score=106.63 Aligned_cols=260 Identities=14% Similarity=0.177 Sum_probs=170.6
Q ss_pred cccccCCCCCCCCceEEEEEeecceeEeeeecccCCCCCccccc--cccceeeehhhcccCCCcceEeecCCCceeeeee
Q 000722 120 TSGFASPPPSTKGRHFLVICCVNKAIFLDLVTMRGRDIPKQELD--NKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLS 197 (1331)
Q Consensus 120 ~~~V~svafspdg~~lLasgs~d~iIvwDl~t~~~~~i~~~~~h--~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWD 197 (1331)
...+..+..+|.|+ -++.++.-+.++.|+...-. -+....| .-.|-.+.|+| ++.-++-++......-.+|+
T Consensus 24 ~~~~~a~si~p~gr-di~lAsr~gl~i~dld~p~~--ppr~l~h~tpw~vad~qws~---h~a~~~wiVsts~qkaiiwn 97 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGR-DIVLASRQGLYIIDLDDPFT--PPRWLHHITPWQVADVQWSP---HPAKPYWIVSTSNQKAIIWN 97 (1081)
T ss_pred cCcccceeeccccc-hhhhhhhcCeEEEeccCCCC--CceeeeccCcchhcceeccc---CCCCceeEEecCcchhhhhh
Confidence 45567778889887 67777777777777664321 1222233 34677788976 34444444444455566899
Q ss_pred hhh--heeehhhcCCCccchhhhhHhhhccccEEEeecCCCceEEEEeccCCCccccccccceeeeccCcEEEEEechhc
Q 000722 198 MIS--WKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVM 275 (1331)
Q Consensus 198 l~t--~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~ 275 (1331)
+.. .+.+.-+..||...|+.+.| .......+++++.|-.+..||+++... +.+........-..|.|+-
T Consensus 98 lA~ss~~aIef~lhghsraitd~n~--~~q~pdVlatcsvdt~vh~wd~rSp~~-----p~ys~~~w~s~asqVkwny-- 168 (1081)
T KOG0309|consen 98 LAKSSSNAIEFVLHGHSRAITDINF--NPQHPDVLATCSVDTYVHAWDMRSPHR-----PFYSTSSWRSAASQVKWNY-- 168 (1081)
T ss_pred hhcCCccceEEEEecCccceecccc--CCCCCcceeeccccccceeeeccCCCc-----ceeeeecccccCceeeecc--
Confidence 863 34444445699999999985 344556899999999999999998652 3444444455567788887
Q ss_pred cCCCcEEEeecCceeEeeeccchhhhcccCCCCcccccccccccCCCCCC--Cceeeeeecce--eeeeecCcccc----
Q 000722 276 GGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPN--LDILTCVKDSH--IWAIEHPTYSA---- 347 (1331)
Q Consensus 276 ~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspd--g~lLa~s~Dg~--IWdl~~~~~~~---- 347 (1331)
....+...+..+.|++||.+.|.. +..++.+|...|..+.|..- +.+++++.|++ .||....+...
T Consensus 169 -k~p~vlasshg~~i~vwd~r~gs~-----pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~v 242 (1081)
T KOG0309|consen 169 -KDPNVLASSHGNDIFVWDLRKGST-----PLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTV 242 (1081)
T ss_pred -cCcchhhhccCCceEEEeccCCCc-----ceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceec
Confidence 344555567788899999987653 22336678888888888754 55778888886 58876432210
Q ss_pred cc---------cccc----------------------c-----cccCCCccccccccceEEEEEEeccC---------Cc
Q 000722 348 LT---------RPLC----------------------E-----LSSLVPPQVLAHHKKLRVYCMVAHSL---------QP 382 (1331)
Q Consensus 348 l~---------~~~~----------------------~-----~~~~~~~~~l~~h~~~~I~~la~sp~---------~~ 382 (1331)
.. .+++ + .....++.+|.+|.+ .|....|... ..
T Consensus 243 tt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D-~V~eFlWR~r~e~~~d~d~rd 321 (1081)
T KOG0309|consen 243 TTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDD-VVLEFLWRKRKECDGDYDSRD 321 (1081)
T ss_pred cccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcch-HHHHHhhhhcccccCCCCccc
Confidence 00 0000 0 124556778888887 6665555432 34
Q ss_pred cEeeecceeEEEEeecCCCC
Q 000722 383 HLVATGTNVGVIISEFDPRS 402 (1331)
Q Consensus 383 ~lLAtGs~DG~Il~VWDlr~ 402 (1331)
+.|+|.+.|..+ |+|-+..
T Consensus 322 fQLVTWSkD~~l-rlWpI~~ 340 (1081)
T KOG0309|consen 322 FQLVTWSKDQTL-RLWPIDS 340 (1081)
T ss_pred eeEEEeecCCce-EeeeccH
Confidence 689999999997 9998753
No 263
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.23 E-value=4e-06 Score=93.89 Aligned_cols=222 Identities=11% Similarity=0.160 Sum_probs=134.9
Q ss_pred cccceeeehhhcccCCCcceEeecCCCceeeeeehhhhe-----eehhhcCCC------------ccchhhhhHhhhccc
Q 000722 164 NKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWK-----LVRRYTGGH------------KGSISCLMTFMASSG 226 (1331)
Q Consensus 164 ~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~~-----~v~~~~~gH------------~~~V~~vawf~~spd 226 (1331)
.+-|.+|.| ...|.+|++|..+|.|.+|.-.... ....+. .| ...|+.+.|+ -..+
T Consensus 25 adiis~vef-----~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fq-shepEFDYLkSleieEKinkIrw~-~~~n 97 (433)
T KOG1354|consen 25 ADIISAVEF-----DHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQ-SHEPEFDYLKSLEIEEKINKIRWL-DDGN 97 (433)
T ss_pred hcceeeEEe-----ecccceEeecCCCCeEEEeecccccccceeeeeeee-ccCcccchhhhhhhhhhhhhceec-CCCC
Confidence 567889999 7899999999999999999654321 111121 23 3467888886 4555
Q ss_pred cEEEeecCCCceEEEEeccCCCccc-----------------------------ccccccee-eeccCcEEEEEechhcc
Q 000722 227 EALLVSGGSDGLLILWSADHGQDSR-----------------------------ELVPKLSL-KAHDGGVVAVELSRVMG 276 (1331)
Q Consensus 227 g~lLaSgs~DgtIrVWDl~tg~~~~-----------------------------~~~~~~~l-~gH~~~V~svafsp~~~ 276 (1331)
...++....|.+|++|-+....... +..+...+ .+|...|+++.++.
T Consensus 98 ~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~Ns--- 174 (433)
T KOG1354|consen 98 LAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNS--- 174 (433)
T ss_pred ccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecC---
Confidence 6677778899999999876432110 11111211 46888899999997
Q ss_pred CCCcEEEeecCceeEeeeccchhhhcc---cCCCCcccccccccccCCCCCCCc--eeeeeecce--eeeeecCcccccc
Q 000722 277 GSPQLITIGADKTLAIWDTVSFKELRR---IKPVPKLACHSVASWCHPRAPNLD--ILTCVKDSH--IWAIEHPTYSALT 349 (1331)
Q Consensus 277 dg~~LaSgs~Dg~IrIWDl~t~~~l~~---~~~~~~l~~H~~~V~svafspdg~--lLa~s~Dg~--IWdl~~~~~~~l~ 349 (1331)
|+..++++ +|=.|.+|++.-...-.. ++| ..+..-+.-|++..|||... ++-.+..|+ +-|++...+....
T Consensus 175 D~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP-~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~h 252 (433)
T KOG1354|consen 175 DKETFLSA-DDLRINLWNLEIIDQSFNIVDIKP-ANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAH 252 (433)
T ss_pred ccceEeec-cceeeeeccccccCCceeEEEccc-cCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcch
Confidence 77777765 688999999864322111 111 12344455688999999855 333455554 6777743221111
Q ss_pred cccc-ccccCCCccccccccceEEEEEEeccCCccEeeecceeEEEEeecCCC
Q 000722 350 RPLC-ELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPR 401 (1331)
Q Consensus 350 ~~~~-~~~~~~~~~~l~~h~~~~I~~la~sp~~~~lLAtGs~DG~Il~VWDlr 401 (1331)
.++. +........-|..--. .|..+.|++ .|+++++-+.--+ ++||+.
T Consensus 253 sKlfEepedp~~rsffseiIs-SISDvKFs~-sGryilsRDyltv--k~wD~n 301 (433)
T KOG1354|consen 253 SKLFEEPEDPSSRSFFSEIIS-SISDVKFSH-SGRYILSRDYLTV--KLWDLN 301 (433)
T ss_pred hhhhccccCCcchhhHHHHhh-hhhceEEcc-CCcEEEEecccee--EEEecc
Confidence 1111 1111111111222223 688999999 5777777655433 899983
No 264
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.22 E-value=8.1e-07 Score=108.20 Aligned_cols=206 Identities=16% Similarity=0.224 Sum_probs=140.1
Q ss_pred CCCccccccccceeeehhhcccCCCcceEeecCCCceeeeeehhhheeehhhcCCCccchhhhhHhhhccccEEEeecCC
Q 000722 156 DIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGS 235 (1331)
Q Consensus 156 ~i~~~~~h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~ 235 (1331)
....+..|....+|++| +.+.+.|+.|+..|.|++|+..+|....... +|+..|+-+. .+.+|.++++.+.
T Consensus 1093 ~w~~frd~~~~fTc~af-----s~~~~hL~vG~~~Geik~~nv~sG~~e~s~n-cH~SavT~ve---Ps~dgs~~Ltsss 1163 (1516)
T KOG1832|consen 1093 SWRSFRDETALFTCIAF-----SGGTNHLAVGSHAGEIKIFNVSSGSMEESVN-CHQSAVTLVE---PSVDGSTQLTSSS 1163 (1516)
T ss_pred cchhhhccccceeeEEe-----ecCCceEEeeeccceEEEEEccCcccccccc-cccccccccc---ccCCcceeeeecc
Confidence 44556777889999999 7788999999999999999999998888876 9999999997 7888887766554
Q ss_pred Cc--eEEEEeccCCCccccccccceeeeccCcEEEEEechhccCCCcEEEeecCceeEeeeccchhhhcc-cCCCCcccc
Q 000722 236 DG--LLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRR-IKPVPKLAC 312 (1331)
Q Consensus 236 Dg--tIrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~-~~~~~~l~~ 312 (1331)
-. -.-+|++..- +.+.+++. .-.++.|+. ....-+.|+.-....+||++++..+.+ +.+. .+
T Consensus 1164 ~S~PlsaLW~~~s~-----~~~~Hsf~----ed~~vkFsn---~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~---~~ 1228 (1516)
T KOG1832|consen 1164 SSSPLSALWDASST-----GGPRHSFD----EDKAVKFSN---SLQFRALGTEADDALLYDVQTCSPLQTYLTDT---VT 1228 (1516)
T ss_pred ccCchHHHhccccc-----cCcccccc----ccceeehhh---hHHHHHhcccccceEEEecccCcHHHHhcCcc---hh
Confidence 33 4668998652 11222333 235788886 344444555556789999999988777 3322 12
Q ss_pred cccccccCCCCCCCceeeeeecceeeeeecCccccccccccccccCCCccccccccceEEEEEEeccCCccEeeecceeE
Q 000722 313 HSVASWCHPRAPNLDILTCVKDSHIWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVG 392 (1331)
Q Consensus 313 H~~~V~svafspdg~lLa~s~Dg~IWdl~~~~~~~l~~~~~~~~~~~~~~~l~~h~~~~I~~la~sp~~~~lLAtGs~DG 392 (1331)
....-.+..|+|+.+++. .||-+||++... .+..|..-+. -..-.|||. ++.++.-+
T Consensus 1229 ~~y~~n~a~FsP~D~LIl--ndGvLWDvR~~~---------------aIh~FD~ft~--~~~G~FHP~-g~eVIINS--- 1285 (1516)
T KOG1832|consen 1229 SSYSNNLAHFSPCDTLIL--NDGVLWDVRIPE---------------AIHRFDQFTD--YGGGGFHPS-GNEVIINS--- 1285 (1516)
T ss_pred hhhhccccccCCCcceEe--eCceeeeeccHH---------------HHhhhhhhee--cccccccCC-CceEEeec---
Confidence 222235788999988775 488899998641 1112221111 112368994 66566554
Q ss_pred EEEeecCCCCCCCCCCCCC
Q 000722 393 VIISEFDPRSLPAVAPLPT 411 (1331)
Q Consensus 393 ~Il~VWDlr~~p~i~~~~t 411 (1331)
.|||+|++..+...|.
T Consensus 1286 ---EIwD~RTF~lLh~VP~ 1301 (1516)
T KOG1832|consen 1286 ---EIWDMRTFKLLHSVPS 1301 (1516)
T ss_pred ---hhhhhHHHHHHhcCcc
Confidence 5999998776665543
No 265
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.22 E-value=1.5e-05 Score=90.63 Aligned_cols=256 Identities=14% Similarity=0.095 Sum_probs=147.2
Q ss_pred ccccCCCCCCCCceEEEEEee--c-cee--EeeeecccCCCCCccccccccceeeehhhcccCCCcceEeecC-CCceee
Q 000722 121 SGFASPPPSTKGRHFLVICCV--N-KAI--FLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGS-SDGVIR 194 (1331)
Q Consensus 121 ~~V~svafspdg~~lLasgs~--d-~iI--vwDl~t~~~~~i~~~~~h~~~V~~Vaf~P~s~Spdg~~LasGs-~DGtIr 194 (1331)
...+-++|+|+++++.++... . ++. .||-+.++...+..........+.+++ ++++++++++. ..|.|.
T Consensus 40 ~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsv-----d~~g~~vf~AnY~~g~v~ 114 (346)
T COG2706 40 GNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSV-----DEDGRFVFVANYHSGSVS 114 (346)
T ss_pred CCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEE-----CCCCCEEEEEEccCceEE
Confidence 345668899999855555544 2 333 456555554444333444555577888 78999998887 458899
Q ss_pred eeehhh-heeehhh-cCCCccc----------hhhhhHhhhccccEEEeecCC-CceEEEEeccCCCccccccccceeee
Q 000722 195 VLSMIS-WKLVRRY-TGGHKGS----------ISCLMTFMASSGEALLVSGGS-DGLLILWSADHGQDSRELVPKLSLKA 261 (1331)
Q Consensus 195 lWDl~t-~~~v~~~-~~gH~~~----------V~~vawf~~spdg~lLaSgs~-DgtIrVWDl~tg~~~~~~~~~~~l~g 261 (1331)
++-++. |.+.... ...|.+. +.+.. +.|++++|++... --.|.+|++..|+.... .+. .+ .
T Consensus 115 v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~---~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~-~~~-~v-~ 188 (346)
T COG2706 115 VYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSAN---FTPDGRYLVVPDLGTDRIFLYDLDDGKLTPA-DPA-EV-K 188 (346)
T ss_pred EEEcccCCccccceeeeecCCCCCCccccCCccceee---eCCCCCEEEEeecCCceEEEEEcccCccccc-ccc-cc-C
Confidence 998865 3222211 0023333 44444 7999998888753 34788999997765322 111 12 2
Q ss_pred ccCcEEEEEechhccCCCcEEEeec-CceeEeeeccch-h---hhcccCCCCcccccccccccCCCCCCCceeeeeecc-
Q 000722 262 HDGGVVAVELSRVMGGSPQLITIGA-DKTLAIWDTVSF-K---ELRRIKPVPKLACHSVASWCHPRAPNLDILTCVKDS- 335 (1331)
Q Consensus 262 H~~~V~svafsp~~~dg~~LaSgs~-Dg~IrIWDl~t~-~---~l~~~~~~~~l~~H~~~V~svafspdg~lLa~s~Dg- 335 (1331)
-..+-..|.||| ++++....++ +++|.+|.+... . +++++.....--.-......+.+++||++|-++.-+
T Consensus 189 ~G~GPRHi~FHp---n~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~ 265 (346)
T COG2706 189 PGAGPRHIVFHP---NGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGH 265 (346)
T ss_pred CCCCcceEEEcC---CCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCC
Confidence 345688999999 8888777665 999999999873 1 233322221111122344577889999988666444
Q ss_pred -eeeeeecCccccccccccccccCCCccccccccceEEEEEEeccCCccEeeecceeEEEEeecCCC
Q 000722 336 -HIWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPR 401 (1331)
Q Consensus 336 -~IWdl~~~~~~~l~~~~~~~~~~~~~~~l~~h~~~~I~~la~sp~~~~lLAtGs~DG~Il~VWDlr 401 (1331)
.||-..-... ...+. .......+.. .-....+++.+..++|++-++..| .+|.+.
T Consensus 266 dsI~~f~V~~~---~g~L~------~~~~~~teg~-~PR~F~i~~~g~~Liaa~q~sd~i-~vf~~d 321 (346)
T COG2706 266 DSIAVFSVDPD---GGKLE------LVGITPTEGQ-FPRDFNINPSGRFLIAANQKSDNI-TVFERD 321 (346)
T ss_pred CeEEEEEEcCC---CCEEE------EEEEeccCCc-CCccceeCCCCCEEEEEccCCCcE-EEEEEc
Confidence 3544431111 00000 0001111222 245567788555555555455554 577653
No 266
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.16 E-value=5.8e-05 Score=89.72 Aligned_cols=321 Identities=12% Similarity=0.070 Sum_probs=172.1
Q ss_pred CCcEEEEEeecCCceeEeecCCCceeeeccccceEEeeeccCCcccchhh--hhhhhhhcccccccCCCCcccccCCcee
Q 000722 11 NDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLV--GAKLEKLAEGELEHKGKPTEAMRGGSVK 88 (1331)
Q Consensus 11 s~~V~~lafSPdg~~LaSgs~DGtV~VWD~~tg~~i~s~~~~~~~~i~~v--spdg~~Lasgs~d~~g~~l~~l~gg~V~ 88 (1331)
...++..++|++|++++.+ .+..++|++..++..+.+....+ ...+ +|.+.+|.+-.- ..+-..+..
T Consensus 34 ~~~~~v~~~S~~G~lfA~~-~~~~v~i~~~~~~~~~lt~~~~~---~~~L~fSP~g~yL~T~e~------~~i~~~~~~- 102 (566)
T KOG2315|consen 34 SRPCNVFAYSNNGRLFAYS-DNQVVKVFEIATLKVVLCVELKK---TYDLLFSPKGNYLLTWEP------WAIYGPKNA- 102 (566)
T ss_pred CCcceeEEEcCCCcEEEEE-cCCeEEEEEccCCcEEEEeccce---eeeeeecccccccccccc------cccccCCCC-
Confidence 3447788899999988876 56789999988875444443221 1111 144444433210 000000000
Q ss_pred EEeeecchhhHHHHhhhccccccCCcccccccccccCCCCCCCCceEEEEEeecceeEeeeecccCCCCCccccccccce
Q 000722 89 QVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFLDLVTMRGRDIPKQELDNKSLV 168 (1331)
Q Consensus 89 sVaf~DgtIrvWdl~tg~~l~~~~~~~~~~~~~~V~svafspdg~~lLasgs~d~iIvwDl~t~~~~~i~~~~~h~~~V~ 168 (1331)
..-.+++|++.++ +....+ .... .. -|+..|+.|.. +.+=-..+.+.+++....+ ......|...|+
T Consensus 103 ----~~pn~~v~~vet~-~~~s~~--q~k~-Q~-~W~~qfs~dEs-l~arlv~nev~f~~~~~f~---~~~~kl~~~~i~ 169 (566)
T KOG2315|consen 103 ----SNPNVLVYNVETG-VQRSQI--QKKM-QN-GWVPQFSIDES-LAARLVSNEVQFYDLGSFK---TIQHKLSVSGIT 169 (566)
T ss_pred ----CCCceeeeeeccc-eehhhe--ehhh-hc-Ccccccccchh-hhhhhhcceEEEEecCCcc---ceeeeeecccee
Confidence 1234567887773 221111 1111 11 16888999886 4443344455577766522 234567788899
Q ss_pred eeehhhcccCCCcceEee-----cCCCceeeeeehhhhee-----ehhhcCCCccchhhhhHhhhccccEEEeecC--CC
Q 000722 169 CMEFLSRSAVGDVPLVAF-----GSSDGVIRVLSMISWKL-----VRRYTGGHKGSISCLMTFMASSGEALLVSGG--SD 236 (1331)
Q Consensus 169 ~Vaf~P~s~Spdg~~Las-----Gs~DGtIrlWDl~t~~~-----v~~~~~gH~~~V~~vawf~~spdg~lLaSgs--~D 236 (1331)
.+.++| .|....+++ ++.-+.||||...-... .++|. ..+.|. +.| ......+|+.++ -|
T Consensus 170 ~f~lSp---gp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFF--kadkvq-m~W--N~~gt~LLvLastdVD 241 (566)
T KOG2315|consen 170 MLSLSP---GPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFF--KADKVQ-MKW--NKLGTALLVLASTDVD 241 (566)
T ss_pred eEEecC---CCCCceEEEEccCCCCCCcEEEEeccccccccchhhhcccc--ccceeE-EEe--ccCCceEEEEEEEeec
Confidence 999965 344455554 45567899998752111 11221 112222 223 122222333322 23
Q ss_pred ---------ceEEEEeccCCCccccccccceeeeccCcEEEEEechhccCCCcEEE--eecCceeEeeeccchhhhcccC
Q 000722 237 ---------GLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLIT--IGADKTLAIWDTVSFKELRRIK 305 (1331)
Q Consensus 237 ---------gtIrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaS--gs~Dg~IrIWDl~t~~~l~~~~ 305 (1331)
.++++.++....+. ..+ .-.++|.++.|+| +++-+++ |-.--.+.|||++ ++.+..
T Consensus 242 ktn~SYYGEq~Lyll~t~g~s~~------V~L-~k~GPVhdv~W~~---s~~EF~VvyGfMPAkvtifnlr-~~~v~d-- 308 (566)
T KOG2315|consen 242 KTNASYYGEQTLYLLATQGESVS------VPL-LKEGPVHDVTWSP---SGREFAVVYGFMPAKVTIFNLR-GKPVFD-- 308 (566)
T ss_pred CCCccccccceEEEEEecCceEE------Eec-CCCCCceEEEECC---CCCEEEEEEecccceEEEEcCC-CCEeEe--
Confidence 35677776622211 112 2368899999999 6655443 3356788999977 333332
Q ss_pred CCCcccccccccccCCCCCCCcee-eeeecc-----eeeeeecCccccccccccccccCCCccccccccceEEEEEEecc
Q 000722 306 PVPKLACHSVASWCHPRAPNLDIL-TCVKDS-----HIWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHS 379 (1331)
Q Consensus 306 ~~~~l~~H~~~V~svafspdg~lL-a~s~Dg-----~IWdl~~~~~~~l~~~~~~~~~~~~~~~l~~h~~~~I~~la~sp 379 (1331)
.-.+.-.++-|+|.|.+| .+|.++ .|||+.+. +.+..+... .-+-+.|+|
T Consensus 309 ------f~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~---------------K~i~~~~a~---~tt~~eW~P 364 (566)
T KOG2315|consen 309 ------FPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNR---------------KLIAKFKAA---NTTVFEWSP 364 (566)
T ss_pred ------CCCCCccceEECCCCCEEEEeecCCCCCceEEEeccch---------------hhccccccC---CceEEEEcC
Confidence 223444578899999966 455443 38999863 122222222 345689999
Q ss_pred CCccEeeecce------eEEEEeecCCCC
Q 000722 380 LQPHLVATGTN------VGVIISEFDPRS 402 (1331)
Q Consensus 380 ~~~~lLAtGs~------DG~Il~VWDlr~ 402 (1331)
+ |.+++|++. |+-+ +||++..
T Consensus 365 d-Ge~flTATTaPRlrvdNg~-KiwhytG 391 (566)
T KOG2315|consen 365 D-GEYFLTATTAPRLRVDNGI-KIWHYTG 391 (566)
T ss_pred C-CcEEEEEeccccEEecCCe-EEEEecC
Confidence 6 544555442 4444 7888753
No 267
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.10 E-value=4.6e-06 Score=101.88 Aligned_cols=219 Identities=14% Similarity=0.208 Sum_probs=144.9
Q ss_pred cccccccCCCcEEEEEeecCCceeEeecCCCceeeeccccceEEeeeccCCcccchhhhhhhhhhcccccccCCCCcccc
Q 000722 3 RLKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAM 82 (1331)
Q Consensus 3 ~l~~L~gHs~~V~~lafSPdg~~LaSgs~DGtV~VWD~~tg~~i~s~~~~~~~~i~~vspdg~~Lasgs~d~~g~~l~~l 82 (1331)
..++|+.|+..-+|++|+-+.++|+.|+..|.|+++++.+|.......+|
T Consensus 1093 ~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH------------------------------ 1142 (1516)
T KOG1832|consen 1093 SWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCH------------------------------ 1142 (1516)
T ss_pred cchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCcccccccccc------------------------------
Confidence 35788999999999999999999999999999999999987766555533
Q ss_pred cCCceeEEeeecchhhHHHHhhhccccccCCcccccccccccCCCCCCCCceEEEEEeeccee--EeeeecccCCCCCcc
Q 000722 83 RGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI--FLDLVTMRGRDIPKQ 160 (1331)
Q Consensus 83 ~gg~V~sVaf~DgtIrvWdl~tg~~l~~~~~~~~~~~~~~V~svafspdg~~lLasgs~d~iI--vwDl~t~~~~~i~~~ 160 (1331)
.+.|+-+.-+.+|...|.+.+...-. +|+...- ....
T Consensus 1143 -------------------------------------~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~-~~~~--- 1181 (1516)
T KOG1832|consen 1143 -------------------------------------QSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASST-GGPR--- 1181 (1516)
T ss_pred -------------------------------------ccccccccccCCcceeeeeccccCchHHHhccccc-cCcc---
Confidence 33344455566777666666555523 7876641 1111
Q ss_pred ccccccceeeehhhcccCCCcceEeecCCCceeeeeehhhheeehhhcCC---CccchhhhhHhhhccccEEEeecCCCc
Q 000722 161 ELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGG---HKGSISCLMTFMASSGEALLVSGGSDG 237 (1331)
Q Consensus 161 ~~h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~~~v~~~~~g---H~~~V~~vawf~~spdg~lLaSgs~Dg 237 (1331)
..-..-.|+.| +.....-+.|+......|||++++..+.++..+ .+..-++.. |+|+..+++ .||
T Consensus 1182 -Hsf~ed~~vkF-----sn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~---FsP~D~LIl---ndG 1249 (1516)
T KOG1832|consen 1182 -HSFDEDKAVKF-----SNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAH---FSPCDTLIL---NDG 1249 (1516)
T ss_pred -ccccccceeeh-----hhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccc---cCCCcceEe---eCc
Confidence 11235567888 334444455665567889999999887775322 122224443 899988886 455
Q ss_pred eEEEEeccCCCccccccccceeeeccCcEEEEEechhccCCCcEEEeecCceeEeeeccchhhhcccCCCCccccccccc
Q 000722 238 LLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVAS 317 (1331)
Q Consensus 238 tIrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V 317 (1331)
.+||++..+.++.+.. ++.. ..=.||| +|..++.-+ .|||+++.+.++...... -
T Consensus 1250 --vLWDvR~~~aIh~FD~-ft~~------~~G~FHP---~g~eVIINS-----EIwD~RTF~lLh~VP~Ld--------q 1304 (1516)
T KOG1832|consen 1250 --VLWDVRIPEAIHRFDQ-FTDY------GGGGFHP---SGNEVIINS-----EIWDMRTFKLLHSVPSLD--------Q 1304 (1516)
T ss_pred --eeeeeccHHHHhhhhh-heec------ccccccC---CCceEEeec-----hhhhhHHHHHHhcCcccc--------c
Confidence 4799998766654321 1111 1236898 777777665 699999999887743221 1
Q ss_pred ccCCCCCCCcee
Q 000722 318 WCHPRAPNLDIL 329 (1331)
Q Consensus 318 ~svafspdg~lL 329 (1331)
+.+.|+..|.++
T Consensus 1305 c~VtFNstG~Vm 1316 (1516)
T KOG1832|consen 1305 CAVTFNSTGDVM 1316 (1516)
T ss_pred eEEEeccCccch
Confidence 256677667655
No 268
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.07 E-value=6.6e-05 Score=88.71 Aligned_cols=103 Identities=18% Similarity=0.280 Sum_probs=69.5
Q ss_pred hccccEEEeecCCCceEEEEeccCCCccccccccceeeeccCcEEEEEechhccCCCcEEEeec-----------CceeE
Q 000722 223 ASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGA-----------DKTLA 291 (1331)
Q Consensus 223 ~spdg~lLaSgs~DgtIrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~-----------Dg~Ir 291 (1331)
+||.|.+|+|-..- -|.+|--.+-..++. + .|. .|.-+.||| ...||+|-|. ...++
T Consensus 218 wSP~GTYL~t~Hk~-GI~lWGG~~f~r~~R------F-~Hp-~Vq~idfSP---~EkYLVT~s~~p~~~~~~d~e~~~l~ 285 (698)
T KOG2314|consen 218 WSPKGTYLVTFHKQ-GIALWGGESFDRIQR------F-YHP-GVQFIDFSP---NEKYLVTYSPEPIIVEEDDNEGQQLI 285 (698)
T ss_pred ecCCceEEEEEecc-ceeeecCccHHHHHh------c-cCC-CceeeecCC---ccceEEEecCCccccCcccCCCceEE
Confidence 69999999986544 477896554443332 1 243 488899999 8899998763 25799
Q ss_pred eeeccchhhhcccCCCCcccccccccc-cCCCCCCCceeeeee-cc-eeeeee
Q 000722 292 IWDTVSFKELRRIKPVPKLACHSVASW-CHPRAPNLDILTCVK-DS-HIWAIE 341 (1331)
Q Consensus 292 IWDl~t~~~l~~~~~~~~l~~H~~~V~-svafspdg~lLa~s~-Dg-~IWdl~ 341 (1331)
|||+.+|...+.|.... ....+| -+.||.|++++++-. ++ .|++..
T Consensus 286 IWDI~tG~lkrsF~~~~----~~~~~WP~frWS~DdKy~Arm~~~sisIyEtp 334 (698)
T KOG2314|consen 286 IWDIATGLLKRSFPVIK----SPYLKWPIFRWSHDDKYFARMTGNSISIYETP 334 (698)
T ss_pred EEEccccchhcceeccC----CCccccceEEeccCCceeEEeccceEEEEecC
Confidence 99999999888865431 111222 467899999887533 33 366544
No 269
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.07 E-value=1.5e-05 Score=96.18 Aligned_cols=297 Identities=12% Similarity=0.113 Sum_probs=179.9
Q ss_pred CcEEEEEeecCCceeEeecCCCceeeecccc-ceEEeeeccCCcccchhhhhhhhhhcccccccCCCCcccccCCceeEE
Q 000722 12 DKIVKIQLHPTHPWLVTADASDHVSVWNWEH-RQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRGGSVKQV 90 (1331)
Q Consensus 12 ~~V~~lafSPdg~~LaSgs~DGtV~VWD~~t-g~~i~s~~~~~~~~i~~vspdg~~Lasgs~d~~g~~l~~l~gg~V~sV 90 (1331)
+++..+..+|.|+-++.++.-|...+ |+.. +..-+-+. |... +. ++-..+. .-...+.+.|
T Consensus 25 ~~~~a~si~p~grdi~lAsr~gl~i~-dld~p~~ppr~l~--h~tp-w~-------vad~qws-------~h~a~~~wiV 86 (1081)
T KOG0309|consen 25 GGFNAVSINPSGRDIVLASRQGLYII-DLDDPFTPPRWLH--HITP-WQ-------VADVQWS-------PHPAKPYWIV 86 (1081)
T ss_pred CcccceeeccccchhhhhhhcCeEEE-eccCCCCCceeee--ccCc-ch-------hcceecc-------cCCCCceeEE
Confidence 56778899999999998887775433 3321 11111110 1000 00 0000000 0012456667
Q ss_pred eeecchhhHHHHhhhccccccCCcccccccccccCCCCCCCCceEEEEEeeccee-EeeeecccCCCCCcccccccccee
Q 000722 91 NFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQELDNKSLVC 169 (1331)
Q Consensus 91 af~DgtIrvWdl~tg~~l~~~~~~~~~~~~~~V~svafspdg~~lLasgs~d~iI-vwDl~t~~~~~i~~~~~h~~~V~~ 169 (1331)
.+....-.+|++........ .....+| ...|+.+.|+|+.+.++++|+-|..+ .||..+.+.. +-....-...-..
T Consensus 87 sts~qkaiiwnlA~ss~~aI-ef~lhgh-sraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p-~ys~~~w~s~asq 163 (1081)
T KOG0309|consen 87 STSNQKAIIWNLAKSSSNAI-EFVLHGH-SRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRP-FYSTSSWRSAASQ 163 (1081)
T ss_pred ecCcchhhhhhhhcCCccce-EEEEecC-ccceeccccCCCCCcceeeccccccceeeeccCCCcc-eeeeecccccCce
Confidence 77777778898865433211 1223344 77899999999998899999988877 8998875432 2122222345566
Q ss_pred eehhhcccCCCcceEeecCCCceeeeeehhhhe-eehhhcCCCccchhhhhHhhhccccEEEeecCCCceEEEEeccCCC
Q 000722 170 MEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWK-LVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQ 248 (1331)
Q Consensus 170 Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~~-~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrVWDl~tg~ 248 (1331)
|.|. -....+...+....|++||.+.+. .+..+. +|...|+.+. | .......+.+++.||+|+.||.....
T Consensus 164 Vkwn-----yk~p~vlasshg~~i~vwd~r~gs~pl~s~K-~~vs~vn~~~-f-nr~~~s~~~s~~~d~tvkfw~y~kSt 235 (1081)
T KOG0309|consen 164 VKWN-----YKDPNVLASSHGNDIFVWDLRKGSTPLCSLK-GHVSSVNSID-F-NRFKYSEIMSSSNDGTVKFWDYSKST 235 (1081)
T ss_pred eeec-----ccCcchhhhccCCceEEEeccCCCcceEEec-ccceeeehHH-H-hhhhhhhhcccCCCCceeeecccccc
Confidence 8883 334445556677889999998764 455555 8999999998 2 44555678999999999999987654
Q ss_pred ccccccccceeeeccCcEEEEEechhccCCCcEEEeecCceeEeeeccchhhh----cccCCCCcccccccccccCCCCC
Q 000722 249 DSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKEL----RRIKPVPKLACHSVASWCHPRAP 324 (1331)
Q Consensus 249 ~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l----~~~~~~~~l~~H~~~V~svafsp 324 (1331)
...+ + ....+.+|+.-.|-|. +++.++.---.+..+.+++.++.... ....+++.+.||++.|.-..|-.
T Consensus 236 ~e~~----~-~vtt~~piw~~r~~Pf-g~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~ 309 (1081)
T KOG0309|consen 236 TESK----R-TVTTNFPIWRGRYLPF-GEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRK 309 (1081)
T ss_pred cccc----e-eccccCcceecccccc-CceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhh
Confidence 3221 1 1223455666677774 33434332223336666665543321 12346677899999887666642
Q ss_pred -----------CCceeeeeecce--eeeeecC
Q 000722 325 -----------NLDILTCVKDSH--IWAIEHP 343 (1331)
Q Consensus 325 -----------dg~lLa~s~Dg~--IWdl~~~ 343 (1331)
+-++++-+.|.+ +|-+...
T Consensus 310 r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~~ 341 (1081)
T KOG0309|consen 310 RKECDGDYDSRDFQLVTWSKDQTLRLWPIDSQ 341 (1081)
T ss_pred cccccCCCCccceeEEEeecCCceEeeeccHH
Confidence 223678888885 7988754
No 270
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.06 E-value=2.1e-05 Score=94.59 Aligned_cols=136 Identities=14% Similarity=0.099 Sum_probs=87.5
Q ss_pred cceEeecCCCceeeeeehhhheeehhhcCCCccchhhhhHhhhccccEEEeecCCCceEEEEeccCCCccccccccceee
Q 000722 181 VPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLK 260 (1331)
Q Consensus 181 g~~LasGs~DGtIrlWDl~t~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrVWDl~tg~~~~~~~~~~~l~ 260 (1331)
+..+++++.+|.++.||..+++.+.... ... ... ....+..++.++.||.+..+|..+++.+++.. .+.
T Consensus 241 ~~~vy~~~~~g~l~a~d~~tG~~~W~~~--~~~-~~~-----p~~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~---~~~ 309 (377)
T TIGR03300 241 GGQVYAVSYQGRVAALDLRSGRVLWKRD--ASS-YQG-----PAVDDNRLYVTDADGVVVALDRRSGSELWKND---ELK 309 (377)
T ss_pred CCEEEEEEcCCEEEEEECCCCcEEEeec--cCC-ccC-----ceEeCCEEEEECCCCeEEEEECCCCcEEEccc---ccc
Confidence 5577888889999999999987765443 111 111 22345677777899999999999988665421 111
Q ss_pred eccCcEEEEEechhccCCCcEEEeecCceeEeeeccchhhhcccCCCCcccccccccccCCCCCCCceeeeeecceeeee
Q 000722 261 AHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDILTCVKDSHIWAI 340 (1331)
Q Consensus 261 gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg~lLa~s~Dg~IWdl 340 (1331)
+ ....+... .+..|++++.||.|++||..+++.+.++ ..+...+.......++.++.++.||+|+-+
T Consensus 310 ~--~~~ssp~i-----~g~~l~~~~~~G~l~~~d~~tG~~~~~~------~~~~~~~~~sp~~~~~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 310 Y--RQLTAPAV-----VGGYLVVGDFEGYLHWLSREDGSFVARL------KTDGSGIASPPVVVGDGLLVQTRDGDLYAF 376 (377)
T ss_pred C--CccccCEE-----ECCEEEEEeCCCEEEEEECCCCCEEEEE------EcCCCccccCCEEECCEEEEEeCCceEEEe
Confidence 1 11122222 2458889999999999999999877663 223323333333345667788888877543
No 271
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.06 E-value=1.2e-05 Score=87.22 Aligned_cols=147 Identities=13% Similarity=0.121 Sum_probs=96.2
Q ss_pred EEEEEeecceeEeeeecccCCCCCccccccccceeeehhhcccCCCcceEeecCCCceeeeeehhhheeehhhcCCCccc
Q 000722 135 FLVICCVNKAIFLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGS 214 (1331)
Q Consensus 135 lLasgs~d~iIvwDl~t~~~~~i~~~~~h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~~~v~~~~~gH~~~ 214 (1331)
+...-..|..+.|+++..+... ......+.|++++-||. ..+.+++|+.||.+-+||+++......+...|+..
T Consensus 152 ~g~~n~~d~~~a~~~~p~~t~~--~~~~~~~~v~~l~~hp~----qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~ 225 (319)
T KOG4714|consen 152 CGNWNAQDNFYANTLDPIKTLI--PSKKALDAVTALCSHPA----QQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAE 225 (319)
T ss_pred cceEeeccceeeeccccccccc--ccccccccchhhhCCcc----cccEEEEecCCCeEEEEEcccccchHHHHHHhhhh
Confidence 3444455566666655432211 12222445999999763 46788999999999999999887766666699999
Q ss_pred hhhhhHhhhccccEEEeecCCCceEEEEeccCC-----------------Ccccccccc-ceeeeccCcEEEEEechhcc
Q 000722 215 ISCLMTFMASSGEALLVSGGSDGLLILWSADHG-----------------QDSRELVPK-LSLKAHDGGVVAVELSRVMG 276 (1331)
Q Consensus 215 V~~vawf~~spdg~lLaSgs~DgtIrVWDl~tg-----------------~~~~~~~~~-~~l~gH~~~V~svafsp~~~ 276 (1331)
++.+. | .+.++..|++++.||.+-.||..+. ..++..... ..+......|+++...
T Consensus 226 i~eV~-F-Hpk~p~~Lft~sedGslw~wdas~~~l~i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfDV~---- 299 (319)
T KOG4714|consen 226 IWEVH-F-HPKNPEHLFTCSEDGSLWHWDASTTFLSISNQASVISSWLSGDPVKSRIEITSLLPSRSLSINSFDVL---- 299 (319)
T ss_pred hhhee-c-cCCCchheeEecCCCcEEEEcCCCceEEecCccccccccccCCcccceEeeeccccccceeeeeeecc----
Confidence 99997 2 4567789999999999999998741 111110000 0011122235555553
Q ss_pred CCCcEEEeecCceeEeee
Q 000722 277 GSPQLITIGADKTLAIWD 294 (1331)
Q Consensus 277 dg~~LaSgs~Dg~IrIWD 294 (1331)
++.|++|++-+.|++++
T Consensus 300 -g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 300 -GPCLVCGTDAEAIYLTR 316 (319)
T ss_pred -CceEEeccccceEEEec
Confidence 57899999988888875
No 272
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.04 E-value=3.5e-05 Score=93.75 Aligned_cols=179 Identities=18% Similarity=0.097 Sum_probs=110.1
Q ss_pred cccccCCCCCCCCceEEEEEeec---ceeEeeeecccCCCCCccccccccceeeehhhcccCCCcceEe-ecCCCc--ee
Q 000722 120 TSGFASPPPSTKGRHFLVICCVN---KAIFLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVA-FGSSDG--VI 193 (1331)
Q Consensus 120 ~~~V~svafspdg~~lLasgs~d---~iIvwDl~t~~~~~i~~~~~h~~~V~~Vaf~P~s~Spdg~~La-sGs~DG--tI 193 (1331)
...+.+..|+|+|+.++.+...+ .+.+||+.+++... ...+...+.++.| +|+++.|+ +.+.++ .|
T Consensus 189 ~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~---~~~~~~~~~~~~~-----spDg~~l~~~~~~~~~~~i 260 (417)
T TIGR02800 189 REPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK---VASFPGMNGAPAF-----SPDGSKLAVSLSKDGNPDI 260 (417)
T ss_pred CCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE---eecCCCCccceEE-----CCCCCEEEEEECCCCCccE
Confidence 34567788999998544443322 34478887764322 2233445667888 78898765 444444 58
Q ss_pred eeeehhhheeehhhcCCCccchhhhhHhhhccccEEEeecCC-Cc--eEEEEeccCCCccccccccceeeeccCcEEEEE
Q 000722 194 RVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGS-DG--LLILWSADHGQDSRELVPKLSLKAHDGGVVAVE 270 (1331)
Q Consensus 194 rlWDl~t~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~-Dg--tIrVWDl~tg~~~~~~~~~~~l~gH~~~V~sva 270 (1331)
++||+.++...... .|........ ++++++.|+.++. ++ .|.+||+.+++.. .+..+...+....
T Consensus 261 ~~~d~~~~~~~~l~--~~~~~~~~~~---~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-------~l~~~~~~~~~~~ 328 (417)
T TIGR02800 261 YVMDLDGKQLTRLT--NGPGIDTEPS---WSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-------RLTFRGGYNASPS 328 (417)
T ss_pred EEEECCCCCEEECC--CCCCCCCCEE---ECCCCCEEEEEECCCCCceEEEEECCCCCEE-------EeecCCCCccCeE
Confidence 88898876544332 3444444454 5788887765543 33 5777787765421 1333445577889
Q ss_pred echhccCCCcEEEeecCc---eeEeeeccchhhhcccCCCCcccccccccccCCCCCCCcee
Q 000722 271 LSRVMGGSPQLITIGADK---TLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDIL 329 (1331)
Q Consensus 271 fsp~~~dg~~LaSgs~Dg---~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg~lL 329 (1331)
|+| ++.+|+.++.++ .|.+||+.++.. +.+ ..+ .......|+|+++.|
T Consensus 329 ~sp---dg~~i~~~~~~~~~~~i~~~d~~~~~~-~~l------~~~-~~~~~p~~spdg~~l 379 (417)
T TIGR02800 329 WSP---DGDLIAFVHREGGGFNIAVMDLDGGGE-RVL------TDT-GLDESPSFAPNGRMI 379 (417)
T ss_pred ECC---CCCEEEEEEccCCceEEEEEeCCCCCe-EEc------cCC-CCCCCceECCCCCEE
Confidence 999 788888887765 788899877542 221 111 122356799999855
No 273
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.04 E-value=6.8e-05 Score=91.75 Aligned_cols=157 Identities=16% Similarity=0.062 Sum_probs=89.8
Q ss_pred CCCCCCCCceEEEEEeec---cee--EeeeecccCCCCCccc-cccccceeeehhhcccCCCcceEeecC-CCceeeeee
Q 000722 125 SPPPSTKGRHFLVICCVN---KAI--FLDLVTMRGRDIPKQE-LDNKSLVCMEFLSRSAVGDVPLVAFGS-SDGVIRVLS 197 (1331)
Q Consensus 125 svafspdg~~lLasgs~d---~iI--vwDl~t~~~~~i~~~~-~h~~~V~~Vaf~P~s~Spdg~~LasGs-~DGtIrlWD 197 (1331)
...|+|||+.++.+...+ .+. .|++.++.......+. .+........| +|||+.|+..+ .+|...||.
T Consensus 235 ~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~w-----SPDG~~Laf~s~~~g~~~ly~ 309 (428)
T PRK01029 235 MPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSF-----SPDGTRLVFVSNKDGRPRIYI 309 (428)
T ss_pred ceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEE-----CCCCCEEEEEECCCCCceEEE
Confidence 356899998555554322 222 3555542111111111 22233456788 78999877665 466555664
Q ss_pred h--hh-heeehhhcCCCccchhhhhHhhhccccEEEeecCCC---ceEEEEeccCCCccccccccceeeeccCcEEEEEe
Q 000722 198 M--IS-WKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSD---GLLILWSADHGQDSRELVPKLSLKAHDGGVVAVEL 271 (1331)
Q Consensus 198 l--~t-~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~D---gtIrVWDl~tg~~~~~~~~~~~l~gH~~~V~svaf 271 (1331)
+ .. +.....+. .+...+.... ++|||+.|+..+.+ ..|.+||+.+++... +......+....|
T Consensus 310 ~~~~~~g~~~~~lt-~~~~~~~~p~---wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~-------Lt~~~~~~~~p~w 378 (428)
T PRK01029 310 MQIDPEGQSPRLLT-KKYRNSSCPA---WSPDGKKIAFCSVIKGVRQICVYDLATGRDYQ-------LTTSPENKESPSW 378 (428)
T ss_pred EECcccccceEEec-cCCCCcccee---ECCCCCEEEEEEcCCCCcEEEEEECCCCCeEE-------ccCCCCCccceEE
Confidence 3 32 22233333 3444556665 69999988765443 468999998876421 2222335677899
Q ss_pred chhccCCCcEEEee-c--CceeEeeeccchhh
Q 000722 272 SRVMGGSPQLITIG-A--DKTLAIWDTVSFKE 300 (1331)
Q Consensus 272 sp~~~dg~~LaSgs-~--Dg~IrIWDl~t~~~ 300 (1331)
+| +++.|+..+ . +..|.+||+.+++.
T Consensus 379 Sp---DG~~L~f~~~~~g~~~L~~vdl~~g~~ 407 (428)
T PRK01029 379 AI---DSLHLVYSAGNSNESELYLISLITKKT 407 (428)
T ss_pred CC---CCCEEEEEECCCCCceEEEEECCCCCE
Confidence 99 777776433 2 35688888876653
No 274
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.03 E-value=7.4e-05 Score=91.05 Aligned_cols=161 Identities=13% Similarity=0.176 Sum_probs=122.9
Q ss_pred ccCCCCCCCCceEEEEEeecceeEeeeecccCCCCCccccccccceeeehhhcc-----cCC--CcceEeecCCCceeee
Q 000722 123 FASPPPSTKGRHFLVICCVNKAIFLDLVTMRGRDIPKQELDNKSLVCMEFLSRS-----AVG--DVPLVAFGSSDGVIRV 195 (1331)
Q Consensus 123 V~svafspdg~~lLasgs~d~iIvwDl~t~~~~~i~~~~~h~~~V~~Vaf~P~s-----~Sp--dg~~LasGs~DGtIrl 195 (1331)
..++.|+|.| +++-|+..-+.+.|..+. +.+.....|...|+.|.|.|.. .+| ..-+|+++.-.|.|.+
T Consensus 18 ~~A~Dw~~~G--LiAygshslV~VVDs~s~--q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil 93 (1062)
T KOG1912|consen 18 RNAADWSPSG--LIAYGSHSLVSVVDSRSL--QLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIIL 93 (1062)
T ss_pred ccccccCccc--eEEEecCceEEEEehhhh--hhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEE
Confidence 5678899988 888888887778888774 4677788999999999998731 122 2346788888999999
Q ss_pred eehhhheeehhhcCCCccchhhhhHhhhcccc-EEEeecCCCceEEEEeccCCCccccccccceeeeccCcEEEEEechh
Q 000722 196 LSMISWKLVRRYTGGHKGSISCLMTFMASSGE-ALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRV 274 (1331)
Q Consensus 196 WDl~t~~~v~~~~~gH~~~V~~vawf~~spdg-~lLaSgs~DgtIrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~ 274 (1331)
||...+..+..+. .|..++..++|+..-++. .+|+.-....++.+|+..+|+..+++ ........|+.+.|.
T Consensus 94 ~d~~~~s~~~~l~-~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~------~ys~~iLs~f~~DPf 166 (1062)
T KOG1912|consen 94 VDFVLASVINWLS-HSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKY------DYSHEILSCFRVDPF 166 (1062)
T ss_pred EEehhhhhhhhhc-CCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeecc------ccCCcceeeeeeCCC
Confidence 9999988888887 899999999997555555 56676677889999999999877652 222334667888885
Q ss_pred ccCCCcEEEeecCceeEeeecc
Q 000722 275 MGGSPQLITIGADKTLAIWDTV 296 (1331)
Q Consensus 275 ~~dg~~LaSgs~Dg~IrIWDl~ 296 (1331)
+.+.+..-+..|.+.+-+.-
T Consensus 167 --d~rh~~~l~s~g~vl~~~~l 186 (1062)
T KOG1912|consen 167 --DSRHFCVLGSKGFVLSCKDL 186 (1062)
T ss_pred --CcceEEEEccCceEEEEecc
Confidence 66777777777777766543
No 275
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.03 E-value=0.00083 Score=76.86 Aligned_cols=183 Identities=10% Similarity=0.094 Sum_probs=113.5
Q ss_pred ecceeEeeeecccCC-CCCccccccccceeeehhhcccCCCcceEeecCC---Cceeeeeehhh--heee--hhh-cCCC
Q 000722 141 VNKAIFLDLVTMRGR-DIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSS---DGVIRVLSMIS--WKLV--RRY-TGGH 211 (1331)
Q Consensus 141 ~d~iIvwDl~t~~~~-~i~~~~~h~~~V~~Vaf~P~s~Spdg~~LasGs~---DGtIrlWDl~t--~~~v--~~~-~~gH 211 (1331)
..++.+|++.+.... .......+...++-++| +++++.|.++.. +|.|--|.+.. |++. ... ..++
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~-----~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~ 89 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAV-----NPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGS 89 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEE-----CCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCC
Confidence 456778977643322 22334455678888999 678888888754 46777776653 4332 221 1122
Q ss_pred ccchhhhhHhhhccccEEEeecC-CCceEEEEeccCCCccccccccceeeeccCc----------EEEEEechhccCCCc
Q 000722 212 KGSISCLMTFMASSGEALLVSGG-SDGLLILWSADHGQDSRELVPKLSLKAHDGG----------VVAVELSRVMGGSPQ 280 (1331)
Q Consensus 212 ~~~V~~vawf~~spdg~lLaSgs-~DgtIrVWDl~tg~~~~~~~~~~~l~gH~~~----------V~svafsp~~~dg~~ 280 (1331)
. -+.++ +++++++++++. .-|.|.++-++..-.++. ...+..|.+. +.+..+.| ++++
T Consensus 90 ~--p~yvs---vd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~---~v~~~~h~g~~p~~rQ~~~h~H~a~~tP---~~~~ 158 (346)
T COG2706 90 P--PCYVS---VDEDGRFVFVANYHSGSVSVYPLQADGSLQP---VVQVVKHTGSGPHERQESPHVHSANFTP---DGRY 158 (346)
T ss_pred C--CeEEE---ECCCCCEEEEEEccCceEEEEEcccCCcccc---ceeeeecCCCCCCccccCCccceeeeCC---CCCE
Confidence 2 24454 788998888776 468999999866322221 1122334444 88899999 8888
Q ss_pred EEEeec-CceeEeeeccchhhhcccCCCCcccccccccccCCCCCCCcee--eeeecce--eeeeec
Q 000722 281 LITIGA-DKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDIL--TCVKDSH--IWAIEH 342 (1331)
Q Consensus 281 LaSgs~-Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg~lL--a~s~Dg~--IWdl~~ 342 (1331)
|++..- --.|.+|++..|+.... .+.. + .....-+.+.|||++++. .+=-+++ +|..+.
T Consensus 159 l~v~DLG~Dri~~y~~~dg~L~~~-~~~~-v-~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~ 222 (346)
T COG2706 159 LVVPDLGTDRIFLYDLDDGKLTPA-DPAE-V-KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNP 222 (346)
T ss_pred EEEeecCCceEEEEEcccCccccc-cccc-c-CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcC
Confidence 888763 34689999997764322 1111 1 223345679999999955 4444555 688775
No 276
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.01 E-value=0.00032 Score=92.88 Aligned_cols=116 Identities=19% Similarity=0.244 Sum_probs=74.4
Q ss_pred cceeeehhhcccCCCcceEeecCC------CceeeeeehhhheeehhhcCCCccchhhhhHhhhccccEEEeecCC---C
Q 000722 166 SLVCMEFLSRSAVGDVPLVAFGSS------DGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGS---D 236 (1331)
Q Consensus 166 ~V~~Vaf~P~s~Spdg~~LasGs~------DGtIrlWDl~t~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~---D 236 (1331)
.-..|+| -.||.++++.+- -..||||+-+ |.+..+.. .-.+--.+++| .|.|++|++.-. .
T Consensus 211 ~~~~ISW-----RGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE-~v~gLe~~l~W---rPsG~lIA~~q~~~~~ 280 (928)
T PF04762_consen 211 GRVRISW-----RGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSE-PVDGLEGALSW---RPSGNLIASSQRLPDR 280 (928)
T ss_pred CceEEEE-----CCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccc-cCCCccCCccC---CCCCCEEEEEEEcCCC
Confidence 4455777 689999998764 2589999965 55544433 33333445665 799999998754 4
Q ss_pred ceEEEEeccCCCccccccccceeeeccCcEEEEEechhccCCCcEEEeecCceeEeeeccch
Q 000722 237 GLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSF 298 (1331)
Q Consensus 237 gtIrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~ 298 (1331)
..|.+|.-+ |-...++.. .+......|..+.|++ ++..|+..-.|. |.+|-..+.
T Consensus 281 ~~VvFfErN-GLrhgeF~l--~~~~~~~~v~~l~Wn~---ds~iLAv~~~~~-vqLWt~~NY 335 (928)
T PF04762_consen 281 HDVVFFERN-GLRHGEFTL--RFDPEEEKVIELAWNS---DSEILAVWLEDR-VQLWTRSNY 335 (928)
T ss_pred cEEEEEecC-CcEeeeEec--CCCCCCceeeEEEECC---CCCEEEEEecCC-ceEEEeeCC
Confidence 556677644 322222211 1123456789999998 888888876555 888876543
No 277
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.01 E-value=0.00013 Score=86.73 Aligned_cols=303 Identities=11% Similarity=0.062 Sum_probs=170.2
Q ss_pred ccCCCCCCCCceEEEEEeecceeEeeeecccCCCCCccccccccceeeehhhcccCCCcceEeecC-----C-----Cce
Q 000722 123 FASPPPSTKGRHFLVICCVNKAIFLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGS-----S-----DGV 192 (1331)
Q Consensus 123 V~svafspdg~~lLasgs~d~iIvwDl~t~~~~~i~~~~~h~~~V~~Vaf~P~s~Spdg~~LasGs-----~-----DGt 192 (1331)
++..+++++|+ +++.+..+.+.+++..+.. . .+......++++.| +|.+.+|.+-- . .-.
T Consensus 37 ~~v~~~S~~G~-lfA~~~~~~v~i~~~~~~~--~--~lt~~~~~~~~L~f-----SP~g~yL~T~e~~~i~~~~~~~~pn 106 (566)
T KOG2315|consen 37 CNVFAYSNNGR-LFAYSDNQVVKVFEIATLK--V--VLCVELKKTYDLLF-----SPKGNYLLTWEPWAIYGPKNASNPN 106 (566)
T ss_pred ceeEEEcCCCc-EEEEEcCCeEEEEEccCCc--E--EEEeccceeeeeee-----cccccccccccccccccCCCCCCCc
Confidence 45677899997 7777777666677766543 1 12222337888999 66777765421 1 234
Q ss_pred eeeeehhhheeehhhcCCCccchhhhhHhhhccccEEEeecCCCceEEEEeccCCCccccccccceeeeccCcEEEEEec
Q 000722 193 IRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELS 272 (1331)
Q Consensus 193 IrlWDl~t~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafs 272 (1331)
+++|+.+++.....+....+.. ++.. |+.|..+. .=-..+.+.+|+..+.+... -.-|..+|+.+.++
T Consensus 107 ~~v~~vet~~~~s~~q~k~Q~~-W~~q---fs~dEsl~-arlv~nev~f~~~~~f~~~~-------~kl~~~~i~~f~lS 174 (566)
T KOG2315|consen 107 VLVYNVETGVQRSQIQKKMQNG-WVPQ---FSIDESLA-ARLVSNEVQFYDLGSFKTIQ-------HKLSVSGITMLSLS 174 (566)
T ss_pred eeeeeeccceehhheehhhhcC-cccc---cccchhhh-hhhhcceEEEEecCCcccee-------eeeeccceeeEEec
Confidence 7799999855554443222222 4665 56665433 22335679999988744221 24467789999999
Q ss_pred hhccCCCcEE-----EeecCceeEeeeccchhhhcccCCCCcccccccccccCCCCCCCc-e-eeeee--cc--------
Q 000722 273 RVMGGSPQLI-----TIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLD-I-LTCVK--DS-------- 335 (1331)
Q Consensus 273 p~~~dg~~La-----Sgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg~-l-La~s~--Dg-------- 335 (1331)
|. +....++ ..|.-+.||||.+......+.... .++ ...+.| .+.|.+.|. + +.++. |.
T Consensus 175 pg-p~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~-ksF-Fkadkv-qm~WN~~gt~LLvLastdVDktn~SYYGE 250 (566)
T KOG2315|consen 175 PG-PEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVAN-KSF-FKADKV-QMKWNKLGTALLVLASTDVDKTNASYYGE 250 (566)
T ss_pred CC-CCCceEEEEccCCCCCCcEEEEeccccccccchhhh-ccc-ccccee-EEEeccCCceEEEEEEEeecCCCcccccc
Confidence 92 1223343 345677899999873322111100 011 111122 567777766 2 23332 22
Q ss_pred -eeeeeecCccccccccccccccCCCccccccccceEEEEEEeccCCc-cEeeecceeEEEEeecCCCCCCCCCCCCCCC
Q 000722 336 -HIWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQP-HLVATGTNVGVIISEFDPRSLPAVAPLPTPS 413 (1331)
Q Consensus 336 -~IWdl~~~~~~~l~~~~~~~~~~~~~~~l~~h~~~~I~~la~sp~~~-~lLAtGs~DG~Il~VWDlr~~p~i~~~~t~s 413 (1331)
+++-+.+ ++... .+......+|.++.|+|++. +-++-|-.--.+ .+||++-
T Consensus 251 q~Lyll~t-------------~g~s~--~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkv-tifnlr~----------- 303 (566)
T KOG2315|consen 251 QTLYLLAT-------------QGESV--SVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKV-TIFNLRG----------- 303 (566)
T ss_pred ceEEEEEe-------------cCceE--EEecCCCCCceEEEECCCCCEEEEEEecccceE-EEEcCCC-----------
Confidence 1322221 11111 22233334899999999532 223333333333 3454431
Q ss_pred CCCCcceEEEeeeeeeeeeeecccCCCCCCCCCCCccccCCCCCCCCchhhHhhhccccccccCCCceeEEEEeeCCcEE
Q 000722 414 GSRDHSAVYIVERELKLVNFQLSSAANPSLGNNGSLSETGRLKGDLPDALQIKQIKKHISTPVPHDSYSILSVSSSGKYL 493 (1331)
Q Consensus 414 ~~~~~s~~~~~~~~l~l~~fq~~~~~~~~lg~~~~ls~~G~~~~~~~e~l~v~~~~r~i~t~~~~e~~s~ls~SpdGryl 493 (1331)
.. +.+| +..++..+-|||.|++|
T Consensus 304 -------------~~-v~df-------------------------------------------~egpRN~~~fnp~g~ii 326 (566)
T KOG2315|consen 304 -------------KP-VFDF-------------------------------------------PEGPRNTAFFNPHGNII 326 (566)
T ss_pred -------------CE-eEeC-------------------------------------------CCCCccceEECCCCCEE
Confidence 10 0011 11223478999999999
Q ss_pred EEEc--CCCceeeEEeecceeEeecCc---ceeeehhcchhhHHHhh
Q 000722 494 AVVW--PDIPYFSVYKVSDWSIVDSGS---ARLLAWDTCRDRFAILE 535 (1331)
Q Consensus 494 aVv~--~~~g~y~Iy~i~~~~~i~~G~---~~~~aWs~~~~~fAvl~ 535 (1331)
++.. +-.|...||++.+.+.+.+-. .+-+.|+|++..|..-.
T Consensus 327 ~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~tt~~eW~PdGe~flTAT 373 (566)
T KOG2315|consen 327 LLAGFGNLPGDMEVWDVPNRKLIAKFKAANTTVFEWSPDGEYFLTAT 373 (566)
T ss_pred EEeecCCCCCceEEEeccchhhccccccCCceEEEEcCCCcEEEEEe
Confidence 6654 355999999999987776444 56799999988766553
No 278
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=97.98 E-value=7.3e-06 Score=64.60 Aligned_cols=36 Identities=22% Similarity=0.564 Sum_probs=34.7
Q ss_pred ccccccCCCcEEEEEeecCCceeEeecCCCceeeec
Q 000722 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWN 39 (1331)
Q Consensus 4 l~~L~gHs~~V~~lafSPdg~~LaSgs~DGtV~VWD 39 (1331)
+++|++|.+.|++|+|+|++.+|++++.|++|+|||
T Consensus 4 ~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 4 VRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 578999999999999999999999999999999997
No 279
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=97.98 E-value=4e-05 Score=90.24 Aligned_cols=233 Identities=15% Similarity=0.132 Sum_probs=129.9
Q ss_pred eecCCceeEeecC----------CCceeeeccccceEEeeeccCCccc--------chhhhhhhhhhcccccccCCCCcc
Q 000722 19 LHPTHPWLVTADA----------SDHVSVWNWEHRQVIYELKAGGVDQ--------RRLVGAKLEKLAEGELEHKGKPTE 80 (1331)
Q Consensus 19 fSPdg~~LaSgs~----------DGtV~VWD~~tg~~i~s~~~~~~~~--------i~~vspdg~~Lasgs~d~~g~~l~ 80 (1331)
+||||+.|..+.. +..|.|||..+++.+.++..+...+ ...++++++.|.....+
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~------- 125 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFS------- 125 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCC-------
Confidence 8999997776654 7899999999999999998653322 33334555554432211
Q ss_pred cccCCceeEEeeecchhhHHHHhhhccccccCCcccccccccccCCCCCCCCceEE--------EEEeecceeEeeee-c
Q 000722 81 AMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFL--------VICCVNKAIFLDLV-T 151 (1331)
Q Consensus 81 ~l~gg~V~sVaf~DgtIrvWdl~tg~~l~~~~~~~~~~~~~~V~svafspdg~~lL--------asgs~d~iIvwDl~-t 151 (1331)
-+..|.+.|+.+++.+.... -|++..++ +.|.+.......+. +
T Consensus 126 ------------p~~~V~VvD~~~~kvv~ei~----------------vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~ 177 (352)
T TIGR02658 126 ------------PSPAVGVVDLEGKAFVRMMD----------------VPDCYHIFPTANDTFFMHCRDGSLAKVGYGTK 177 (352)
T ss_pred ------------CCCEEEEEECCCCcEEEEEe----------------CCCCcEEEEecCCccEEEeecCceEEEEecCC
Confidence 15566667766665432100 13333222 22333333322111 1
Q ss_pred ccCCCCCcccccc--ccceee-ehhhcccCCCcceEeecCCCceeeeeehhh-----heeehhhcCC------Cccchhh
Q 000722 152 MRGRDIPKQELDN--KSLVCM-EFLSRSAVGDVPLVAFGSSDGVIRVLSMIS-----WKLVRRYTGG------HKGSISC 217 (1331)
Q Consensus 152 ~~~~~i~~~~~h~--~~V~~V-af~P~s~Spdg~~LasGs~DGtIrlWDl~t-----~~~v~~~~~g------H~~~V~~ 217 (1331)
++.........+. .++..- .|. ..+|.++.+... |+|.+.|+.. .+.+..+..+ ..+.+.-
T Consensus 178 g~~~~~~~~vf~~~~~~v~~rP~~~----~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ 252 (352)
T TIGR02658 178 GNPKIKPTEVFHPEDEYLINHPAYS----NKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQ 252 (352)
T ss_pred CceEEeeeeeecCCccccccCCceE----cCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCccee
Confidence 1100000001111 111000 221 227877777766 9999999643 2222222111 1222223
Q ss_pred hhHhhhccccEEEeecC----------CCceEEEEeccCCCccccccccceeeeccCcEEEEEechhccCCC-cEEEee-
Q 000722 218 LMTFMASSGEALLVSGG----------SDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSP-QLITIG- 285 (1331)
Q Consensus 218 vawf~~spdg~lLaSgs----------~DgtIrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~-~LaSgs- 285 (1331)
++ ++++++.+.... ..+.|.++|..+++.+..+ . -...+..++++| +++ +|++..
T Consensus 253 ia---~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i------~-vG~~~~~iavS~---Dgkp~lyvtn~ 319 (352)
T TIGR02658 253 VA---YHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKI------E-LGHEIDSINVSQ---DAKPLLYALST 319 (352)
T ss_pred EE---EcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEE------e-CCCceeeEEECC---CCCeEEEEeCC
Confidence 54 787877666532 2257999999988865542 2 234688999999 666 777555
Q ss_pred cCceeEeeeccchhhhccc
Q 000722 286 ADKTLAIWDTVSFKELRRI 304 (1331)
Q Consensus 286 ~Dg~IrIWDl~t~~~l~~~ 304 (1331)
.++.|.++|..+++.++++
T Consensus 320 ~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 320 GDKTLYIFDAETGKELSSV 338 (352)
T ss_pred CCCcEEEEECcCCeEEeee
Confidence 6889999999999887774
No 280
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=97.96 E-value=6.9e-05 Score=89.16 Aligned_cols=249 Identities=12% Similarity=0.050 Sum_probs=133.5
Q ss_pred CCCCCCCCceEEEEEee---cc-eeEeeeec--ccCCCCCccccccccceeeehhhcccCCCcceEeecC-CCceeeeee
Q 000722 125 SPPPSTKGRHFLVICCV---NK-AIFLDLVT--MRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGS-SDGVIRVLS 197 (1331)
Q Consensus 125 svafspdg~~lLasgs~---d~-iIvwDl~t--~~~~~i~~~~~h~~~V~~Vaf~P~s~Spdg~~LasGs-~DGtIrlWD 197 (1331)
.++++|+++.+.++... ++ +..|++.. +....+............+++ ++++++|+++. .+|.|.+++
T Consensus 41 ~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~-----~~~g~~l~vany~~g~v~v~~ 115 (345)
T PF10282_consen 41 WLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAV-----DPDGRFLYVANYGGGSVSVFP 115 (345)
T ss_dssp CEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEE-----CTTSSEEEEEETTTTEEEEEE
T ss_pred eEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEE-----ecCCCEEEEEEccCCeEEEEE
Confidence 46678998844444442 23 33565543 333333333323455667888 78999888876 589999999
Q ss_pred hhh-heeehh---hcC---------CCccchhhhhHhhhccccEEEeec-CCCceEEEEeccCCCc-ccccccccee-ee
Q 000722 198 MIS-WKLVRR---YTG---------GHKGSISCLMTFMASSGEALLVSG-GSDGLLILWSADHGQD-SRELVPKLSL-KA 261 (1331)
Q Consensus 198 l~t-~~~v~~---~~~---------gH~~~V~~vawf~~spdg~lLaSg-s~DgtIrVWDl~tg~~-~~~~~~~~~l-~g 261 (1331)
+.. +..... +.. .......++. ++|+++++++. -....|.+|++..... +. +...+ ..
T Consensus 116 l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~---~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~---~~~~~~~~ 189 (345)
T PF10282_consen 116 LDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVV---FSPDGRFVYVPDLGADRVYVYDIDDDTGKLT---PVDSIKVP 189 (345)
T ss_dssp ECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEE---E-TTSSEEEEEETTTTEEEEEEE-TTS-TEE---EEEEEECS
T ss_pred ccCCcccceeeeecccCCCCCcccccccccceeEE---ECCCCCEEEEEecCCCEEEEEEEeCCCceEE---Eeeccccc
Confidence 976 332221 100 0112223343 78998876654 3455899999876542 11 11111 12
Q ss_pred ccCcEEEEEechhccCCCcEEE-eecCceeEeeecc--chh--hhcccCCCCcccccccccccCCCCCCCceeeee--ec
Q 000722 262 HDGGVVAVELSRVMGGSPQLIT-IGADKTLAIWDTV--SFK--ELRRIKPVPKLACHSVASWCHPRAPNLDILTCV--KD 334 (1331)
Q Consensus 262 H~~~V~svafsp~~~dg~~LaS-gs~Dg~IrIWDl~--t~~--~l~~~~~~~~l~~H~~~V~svafspdg~lLa~s--~D 334 (1331)
...+...+.|+| +++++.+ .-.+++|.+|++. ++. .++++.....-.........+.++|||++|-.+ .+
T Consensus 190 ~G~GPRh~~f~p---dg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~ 266 (345)
T PF10282_consen 190 PGSGPRHLAFSP---DGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGS 266 (345)
T ss_dssp TTSSEEEEEE-T---TSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTT
T ss_pred cCCCCcEEEEcC---CcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccC
Confidence 345689999999 7776654 4568899999998 332 222221111101111245578899999976433 23
Q ss_pred ce--eeeeecCccccccccccccccCCCccccccccceEEEEEEeccCCccEeeecceeEEEEeecCC
Q 000722 335 SH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDP 400 (1331)
Q Consensus 335 g~--IWdl~~~~~~~l~~~~~~~~~~~~~~~l~~h~~~~I~~la~sp~~~~lLAtGs~DG~Il~VWDl 400 (1331)
+. +++++..... + ..+..+..... ....++++|++.+++++.-.++.| .+|++
T Consensus 267 ~sI~vf~~d~~~g~-l----------~~~~~~~~~G~-~Pr~~~~s~~g~~l~Va~~~s~~v-~vf~~ 321 (345)
T PF10282_consen 267 NSISVFDLDPATGT-L----------TLVQTVPTGGK-FPRHFAFSPDGRYLYVANQDSNTV-SVFDI 321 (345)
T ss_dssp TEEEEEEECTTTTT-E----------EEEEEEEESSS-SEEEEEE-TTSSEEEEEETTTTEE-EEEEE
T ss_pred CEEEEEEEecCCCc-e----------EEEEEEeCCCC-CccEEEEeCCCCEEEEEecCCCeE-EEEEE
Confidence 33 6777432110 0 01112222223 467899999766666666566666 57765
No 281
>PRK00178 tolB translocation protein TolB; Provisional
Probab=97.94 E-value=8.5e-05 Score=91.02 Aligned_cols=180 Identities=19% Similarity=0.149 Sum_probs=106.5
Q ss_pred cccccCCCCCCCCceEEEEEeec---ceeEeeeecccCCCCCccccccccceeeehhhcccCCCcceEe-ecCCCc--ee
Q 000722 120 TSGFASPPPSTKGRHFLVICCVN---KAIFLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVA-FGSSDG--VI 193 (1331)
Q Consensus 120 ~~~V~svafspdg~~lLasgs~d---~iIvwDl~t~~~~~i~~~~~h~~~V~~Vaf~P~s~Spdg~~La-sGs~DG--tI 193 (1331)
...+.+..|+|||+.++.+...+ .+.+||+.+++.+.+... .+.+....| +|+|+.|+ +.+.+| .|
T Consensus 198 ~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~---~g~~~~~~~-----SpDG~~la~~~~~~g~~~I 269 (430)
T PRK00178 198 REPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNF---EGLNGAPAW-----SPDGSKLAFVLSKDGNPEI 269 (430)
T ss_pred CCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCC---CCCcCCeEE-----CCCCCEEEEEEccCCCceE
Confidence 34567789999998554444332 244678887654433222 234456788 78998876 444444 68
Q ss_pred eeeehhhheeehhhcCCCccchhhhhHhhhccccEEEeecC-CCc--eEEEEeccCCCccccccccceeeeccCcEEEEE
Q 000722 194 RVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGG-SDG--LLILWSADHGQDSRELVPKLSLKAHDGGVVAVE 270 (1331)
Q Consensus 194 rlWDl~t~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs-~Dg--tIrVWDl~tg~~~~~~~~~~~l~gH~~~V~sva 270 (1331)
.+||+.+++... +. .+........ ++|+|+.|+..+ .+| .|.+||+.+++..+ + +..+ .......
T Consensus 270 y~~d~~~~~~~~-lt-~~~~~~~~~~---~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~-l----t~~~--~~~~~~~ 337 (430)
T PRK00178 270 YVMDLASRQLSR-VT-NHPAIDTEPF---WGKDGRTLYFTSDRGGKPQIYKVNVNGGRAER-V----TFVG--NYNARPR 337 (430)
T ss_pred EEEECCCCCeEE-cc-cCCCCcCCeE---ECCCCCEEEEEECCCCCceEEEEECCCCCEEE-e----ecCC--CCccceE
Confidence 888998776543 33 3444444454 688888765544 333 57777777665321 1 1122 2234568
Q ss_pred echhccCCCcEEEeec-Cc--eeEeeeccchhhhcccCCCCcccccccccccCCCCCCCceee
Q 000722 271 LSRVMGGSPQLITIGA-DK--TLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDILT 330 (1331)
Q Consensus 271 fsp~~~dg~~LaSgs~-Dg--~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg~lLa 330 (1331)
|+| ++++|+..+. ++ .|.+||+.+++. +.+.. ........|+|+|+.+.
T Consensus 338 ~Sp---dg~~i~~~~~~~~~~~l~~~dl~tg~~-~~lt~-------~~~~~~p~~spdg~~i~ 389 (430)
T PRK00178 338 LSA---DGKTLVMVHRQDGNFHVAAQDLQRGSV-RILTD-------TSLDESPSVAPNGTMLI 389 (430)
T ss_pred ECC---CCCEEEEEEccCCceEEEEEECCCCCE-EEccC-------CCCCCCceECCCCCEEE
Confidence 998 7788776654 33 578889887653 22111 11122457999999663
No 282
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=97.90 E-value=0.0002 Score=84.28 Aligned_cols=185 Identities=13% Similarity=0.050 Sum_probs=115.1
Q ss_pred cccccCCCCCCCCceEEEEEeecceeEeeeecccCCCCCccccccccceeeehhhcccCCCcceEeecCCCc--------
Q 000722 120 TSGFASPPPSTKGRHFLVICCVNKAIFLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDG-------- 191 (1331)
Q Consensus 120 ~~~V~svafspdg~~lLasgs~d~iIvwDl~t~~~~~i~~~~~h~~~V~~Vaf~P~s~Spdg~~LasGs~DG-------- 191 (1331)
.-.+..++|||.|. +|++....++.+|+..... +. .......|..+.| +|++.+|.+-+..+
T Consensus 32 ~~p~~~~~~SP~G~-~l~~~~~~~V~~~~g~~~~-~l---~~~~~~~V~~~~f-----SP~~kYL~tw~~~pi~~pe~e~ 101 (561)
T COG5354 32 NWPVAYVSESPLGT-YLFSEHAAGVECWGGPSKA-KL---VRFRHPDVKYLDF-----SPNEKYLVTWSREPIIEPEIEI 101 (561)
T ss_pred CcchhheeecCcch-heehhhccceEEccccchh-he---eeeecCCceeccc-----CcccceeeeeccCCccChhhcc
Confidence 44677788999998 8888888888899665533 11 2333457888999 78899998876533
Q ss_pred -------eeeeeehhhheeehhhcCCCccchhhhhH--hhhccccEEEeecCCCceEEEEeccCCCccccccccceeeec
Q 000722 192 -------VIRVLSMISWKLVRRYTGGHKGSISCLMT--FMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAH 262 (1331)
Q Consensus 192 -------tIrlWDl~t~~~v~~~~~gH~~~V~~vaw--f~~spdg~lLaSgs~DgtIrVWDl~tg~~~~~~~~~~~l~gH 262 (1331)
.+.+||..++..+..+. +-... .+.| +.++-+..+++=- ....++|+++ ++.... .+...++
T Consensus 102 sp~~~~n~~~vwd~~sg~iv~sf~-~~~q~--~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~~~--~p~~~lr-- 172 (561)
T COG5354 102 SPFTSKNNVFVWDIASGMIVFSFN-GISQP--YLGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDNIEE--HPFKNLR-- 172 (561)
T ss_pred CCccccCceeEEeccCceeEeecc-ccCCc--ccccceeeeeecchhhhhh-ccCeEEEEec-CCcccc--Cchhhcc--
Confidence 49999999999998886 33332 1112 1245565555432 3456888987 443221 1222222
Q ss_pred cCcEEEEEechhccCCCcEE-----EeecCceeEeeeccchhhhcccCCCCcccccccccccCCCCCCCceee
Q 000722 263 DGGVVAVELSRVMGGSPQLI-----TIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDILT 330 (1331)
Q Consensus 263 ~~~V~svafsp~~~dg~~La-----Sgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg~lLa 330 (1331)
..+|....|+|. +++..|+ ..+.++++++|.+..++.+.+-. +. ...-..+.|.+.|.+|.
T Consensus 173 ~~gi~dFsisP~-~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~----lf--k~~~~qLkW~~~g~~ll 238 (561)
T COG5354 173 PVGILDFSISPE-GNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKN----LF--KVSGVQLKWQVLGKYLL 238 (561)
T ss_pred ccceeeEEecCC-CCCceEEEEccccCCCCcEEEEEEccCCCeeeeee----eE--eecccEEEEecCCceEE
Confidence 356888999983 1334444 34678899999988655443311 11 11112567888888553
No 283
>PRK04792 tolB translocation protein TolB; Provisional
Probab=97.89 E-value=0.0001 Score=90.85 Aligned_cols=179 Identities=18% Similarity=0.156 Sum_probs=102.4
Q ss_pred cccccCCCCCCCCceEEEEEeecc---eeEeeeecccCCCCCccccccccceeeehhhcccCCCcceEee-cCCCce--e
Q 000722 120 TSGFASPPPSTKGRHFLVICCVNK---AIFLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAF-GSSDGV--I 193 (1331)
Q Consensus 120 ~~~V~svafspdg~~lLasgs~d~---iIvwDl~t~~~~~i~~~~~h~~~V~~Vaf~P~s~Spdg~~Las-Gs~DGt--I 193 (1331)
...+.+..|+|||+.++.+...++ +.+||+.+++...+... ........| +|||+.|+. .+.+|. |
T Consensus 217 ~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~---~g~~~~~~w-----SPDG~~La~~~~~~g~~~I 288 (448)
T PRK04792 217 PEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSF---PGINGAPRF-----SPDGKKLALVLSKDGQPEI 288 (448)
T ss_pred CCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCC---CCCcCCeeE-----CCCCCEEEEEEeCCCCeEE
Confidence 345678899999985555443332 44668877654333222 223346778 789997765 455664 7
Q ss_pred eeeehhhheeehhhcCCCccchhhhhHhhhccccEEEeecC-CCc--eEEEEeccCCCccccccccceeeeccCcEEEEE
Q 000722 194 RVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGG-SDG--LLILWSADHGQDSRELVPKLSLKAHDGGVVAVE 270 (1331)
Q Consensus 194 rlWDl~t~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs-~Dg--tIrVWDl~tg~~~~~~~~~~~l~gH~~~V~sva 270 (1331)
.+||+.+++..+ +. .+........ ++|||+.|+..+ .++ .|.++|+.+++... .+..+ ......+
T Consensus 289 y~~dl~tg~~~~-lt-~~~~~~~~p~---wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-----Lt~~g--~~~~~~~ 356 (448)
T PRK04792 289 YVVDIATKALTR-IT-RHRAIDTEPS---WHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-----LTFEG--EQNLGGS 356 (448)
T ss_pred EEEECCCCCeEE-Cc-cCCCCccceE---ECCCCCEEEEEECCCCCceEEEEECCCCCEEE-----EecCC--CCCcCee
Confidence 778887766543 33 3444455555 688988776544 344 45666776665221 11122 2234568
Q ss_pred echhccCCCcEEEeec-Cce--eEeeeccchhhhcccCCCCcccccccccccCCCCCCCcee
Q 000722 271 LSRVMGGSPQLITIGA-DKT--LAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDIL 329 (1331)
Q Consensus 271 fsp~~~dg~~LaSgs~-Dg~--IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg~lL 329 (1331)
|+| ++++|+..+. ++. |.++|+.+++. +.+ ... .......|+|+|+.|
T Consensus 357 ~Sp---DG~~l~~~~~~~g~~~I~~~dl~~g~~-~~l------t~~-~~d~~ps~spdG~~I 407 (448)
T PRK04792 357 ITP---DGRSMIMVNRTNGKFNIARQDLETGAM-QVL------TST-RLDESPSVAPNGTMV 407 (448)
T ss_pred ECC---CCCEEEEEEecCCceEEEEEECCCCCe-EEc------cCC-CCCCCceECCCCCEE
Confidence 999 7777766554 443 45567666653 221 111 111245799999855
No 284
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=97.89 E-value=0.00055 Score=81.51 Aligned_cols=235 Identities=10% Similarity=0.050 Sum_probs=121.2
Q ss_pred ceeEeee--ecccCCCCCccccccccceeeehhhcccCCCcceEeecCC----Cceeeeeehhhh--ee--ehhhcCCCc
Q 000722 143 KAIFLDL--VTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSS----DGVIRVLSMISW--KL--VRRYTGGHK 212 (1331)
Q Consensus 143 ~iIvwDl--~t~~~~~i~~~~~h~~~V~~Vaf~P~s~Spdg~~LasGs~----DGtIrlWDl~t~--~~--v~~~~~gH~ 212 (1331)
++..|++ .+++...+.. .........+++ ++++++|.+.+. +|.|..|++... ++ +.... ...
T Consensus 14 gI~~~~~d~~~g~l~~~~~-~~~~~~Ps~l~~-----~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~-~~g 86 (345)
T PF10282_consen 14 GIYVFRFDEETGTLTLVQT-VAEGENPSWLAV-----SPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVP-SGG 86 (345)
T ss_dssp EEEEEEEETTTTEEEEEEE-EEESSSECCEEE------TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEE-ESS
T ss_pred cEEEEEEcCCCCCceEeee-ecCCCCCceEEE-----EeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeec-cCC
Confidence 4556655 4443322221 123445666888 678888888765 578999988753 32 22222 112
Q ss_pred cchhhhhHhhhccccEEEeecC-CCceEEEEeccCCCccccccccceeee--------ccCcEEEEEechhccCCCcEEE
Q 000722 213 GSISCLMTFMASSGEALLVSGG-SDGLLILWSADHGQDSRELVPKLSLKA--------HDGGVVAVELSRVMGGSPQLIT 283 (1331)
Q Consensus 213 ~~V~~vawf~~spdg~lLaSgs-~DgtIrVWDl~tg~~~~~~~~~~~l~g--------H~~~V~svafsp~~~dg~~LaS 283 (1331)
.....++ +++++++|+++. .+|+|.++++.....+..........+ ......++.|+| +++++++
T Consensus 87 ~~p~~i~---~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~p---dg~~v~v 160 (345)
T PF10282_consen 87 SSPCHIA---VDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSP---DGRFVYV 160 (345)
T ss_dssp SCEEEEE---ECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-T---TSSEEEE
T ss_pred CCcEEEE---EecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECC---CCCEEEE
Confidence 2223343 688888877765 599999999987422221111111111 123478999999 7887776
Q ss_pred ee-cCceeEeeeccchhh-hcccCCCCcc-cccccccccCCCCCCCcee--eeeecce--eeeeecCccccccccccccc
Q 000722 284 IG-ADKTLAIWDTVSFKE-LRRIKPVPKL-ACHSVASWCHPRAPNLDIL--TCVKDSH--IWAIEHPTYSALTRPLCELS 356 (1331)
Q Consensus 284 gs-~Dg~IrIWDl~t~~~-l~~~~~~~~l-~~H~~~V~svafspdg~lL--a~s~Dg~--IWdl~~~~~~~l~~~~~~~~ 356 (1331)
.. ....|++|++..... +... ..+ ......-..+.|+|+++++ ++-.+++ ++++........ ......
T Consensus 161 ~dlG~D~v~~~~~~~~~~~l~~~---~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~--~~~~~~ 235 (345)
T PF10282_consen 161 PDLGADRVYVYDIDDDTGKLTPV---DSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLT--EIQTIS 235 (345)
T ss_dssp EETTTTEEEEEEE-TTS-TEEEE---EEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEE--EEEEEE
T ss_pred EecCCCEEEEEEEeCCCceEEEe---eccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCcee--EEEEee
Confidence 54 355799999876541 2110 001 1122334578999999855 3334444 566662111000 000000
Q ss_pred cCCCccccccccceEEEEEEeccCCccEeeecceeEEEEeecCC
Q 000722 357 SLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDP 400 (1331)
Q Consensus 357 ~~~~~~~l~~h~~~~I~~la~sp~~~~lLAtGs~DG~Il~VWDl 400 (1331)
. .+. .+.+. . ....|.++|++.++.++...++.| .+|++
T Consensus 236 ~-~~~-~~~~~-~-~~~~i~ispdg~~lyvsnr~~~sI-~vf~~ 274 (345)
T PF10282_consen 236 T-LPE-GFTGE-N-APAEIAISPDGRFLYVSNRGSNSI-SVFDL 274 (345)
T ss_dssp S-CET-TSCSS-S-SEEEEEE-TTSSEEEEEECTTTEE-EEEEE
T ss_pred e-ccc-ccccc-C-CceeEEEecCCCEEEEEeccCCEE-EEEEE
Confidence 0 000 11111 1 477889999755655655555555 46665
No 285
>PRK01029 tolB translocation protein TolB; Provisional
Probab=97.85 E-value=9.3e-05 Score=90.58 Aligned_cols=181 Identities=16% Similarity=0.074 Sum_probs=103.8
Q ss_pred cccCCCCCCCCceEE--EEEeec-c--eeEeeeecccCCCCCccccccccceeeehhhcccCCCcceEeecCC-----Cc
Q 000722 122 GFASPPPSTKGRHFL--VICCVN-K--AIFLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSS-----DG 191 (1331)
Q Consensus 122 ~V~svafspdg~~lL--asgs~d-~--iIvwDl~t~~~~~i~~~~~h~~~V~~Vaf~P~s~Spdg~~LasGs~-----DG 191 (1331)
...+-.|+|||+.+. .+...+ . +.+.++.+++.+.+... ........| +|||+.|+..++ |.
T Consensus 186 ~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~---~g~~~~p~w-----SPDG~~Laf~s~~~g~~di 257 (428)
T PRK01029 186 LSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILAL---QGNQLMPTF-----SPRKKLLAFISDRYGNPDL 257 (428)
T ss_pred CcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecC---CCCccceEE-----CCCCCEEEEEECCCCCcce
Confidence 445678999997532 233322 2 33448877655444332 233345678 789988876542 33
Q ss_pred eeeeeehhhh--eeehhhcCCCccchhhhhHhhhccccEEEeecC-CCceEEEEeccC---CCccccccccceeeeccCc
Q 000722 192 VIRVLSMISW--KLVRRYTGGHKGSISCLMTFMASSGEALLVSGG-SDGLLILWSADH---GQDSRELVPKLSLKAHDGG 265 (1331)
Q Consensus 192 tIrlWDl~t~--~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs-~DgtIrVWDl~t---g~~~~~~~~~~~l~gH~~~ 265 (1331)
.+.+|++..+ .....+..++........ ++|||+.|+..+ .+|...+|.+.- +... ..+..+...
T Consensus 258 ~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~---wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~------~~lt~~~~~ 328 (428)
T PRK01029 258 FIQSFSLETGAIGKPRRLLNEAFGTQGNPS---FSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSP------RLLTKKYRN 328 (428)
T ss_pred eEEEeecccCCCCcceEeecCCCCCcCCeE---ECCCCCEEEEEECCCCCceEEEEECcccccce------EEeccCCCC
Confidence 4555776653 112222212223334455 699998776554 567666665432 1111 123334456
Q ss_pred EEEEEechhccCCCcEEEeecC---ceeEeeeccchhhhcccCCCCcccccccccccCCCCCCCcee
Q 000722 266 VVAVELSRVMGGSPQLITIGAD---KTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDIL 329 (1331)
Q Consensus 266 V~svafsp~~~dg~~LaSgs~D---g~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg~lL 329 (1331)
+....|+| +++.|+..+.+ ..|.+||+.+++.... ......+....|+|||+.|
T Consensus 329 ~~~p~wSP---DG~~Laf~~~~~g~~~I~v~dl~~g~~~~L-------t~~~~~~~~p~wSpDG~~L 385 (428)
T PRK01029 329 SSCPAWSP---DGKKIAFCSVIKGVRQICVYDLATGRDYQL-------TTSPENKESPSWAIDSLHL 385 (428)
T ss_pred ccceeECC---CCCEEEEEEcCCCCcEEEEEECCCCCeEEc-------cCCCCCccceEECCCCCEE
Confidence 67889999 78888766543 4689999988765322 2122234568899999855
No 286
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.80 E-value=0.00015 Score=87.22 Aligned_cols=230 Identities=14% Similarity=0.030 Sum_probs=119.8
Q ss_pred CceeEeecCCCceeeeccccceEEeeeccCCcccchhhhhhhhhhcccccccCCCCcccccCCceeEEeeecchhhHHHH
Q 000722 23 HPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRGGSVKQVNFYDDDVRFWQL 102 (1331)
Q Consensus 23 g~~LaSgs~DGtV~VWD~~tg~~i~s~~~~~~~~i~~vspdg~~Lasgs~d~~g~~l~~l~gg~V~sVaf~DgtIrvWdl 102 (1331)
+..++.++.+|.|.-+|..+|+.+.++.....-. .....++..+..+ ..++.+..+|.
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~-~~p~v~~~~v~v~---------------------~~~g~l~ald~ 122 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLS-GGVGADGGLVFVG---------------------TEKGEVIALDA 122 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcc-cceEEcCCEEEEE---------------------cCCCEEEEEEC
Confidence 5678888899999999999999998877443100 0000111111111 12334444444
Q ss_pred hhhccccccCCcccccccccccCCCCCCCCceEEEEEeecceeEeeeecccCCCCCccccccccc-----eeeehhhccc
Q 000722 103 WRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFLDLVTMRGRDIPKQELDNKSL-----VCMEFLSRSA 177 (1331)
Q Consensus 103 ~tg~~l~~~~~~~~~~~~~~V~svafspdg~~lLasgs~d~iIvwDl~t~~~~~i~~~~~h~~~V-----~~Vaf~P~s~ 177 (1331)
.+++.+-.. . . ...+.+.-.. .+..+++.+.++.++.||..+++.... .......+ .+...
T Consensus 123 ~tG~~~W~~-~-~----~~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~--~~~~~~~~~~~~~~sp~~----- 188 (377)
T TIGR03300 123 EDGKELWRA-K-L----SSEVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWT--YSRVTPALTLRGSASPVI----- 188 (377)
T ss_pred CCCcEeeee-c-c----CceeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeE--EccCCCceeecCCCCCEE-----
Confidence 333322100 0 0 0001110011 233355555555566888887653211 11111110 11111
Q ss_pred CCCcceEeecCCCceeeeeehhhheeehhhcCCCcc---chhhhhHhhhcc--ccEEEeecCCCceEEEEeccCCCcccc
Q 000722 178 VGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKG---SISCLMTFMASS--GEALLVSGGSDGLLILWSADHGQDSRE 252 (1331)
Q Consensus 178 Spdg~~LasGs~DGtIrlWDl~t~~~v~~~~~gH~~---~V~~vawf~~sp--dg~lLaSgs~DgtIrVWDl~tg~~~~~ 252 (1331)
.+..++.++.+|.+..+|..+++.+.....+... .+..+..+..+| .+..++.++.+|.+..||..+++.++.
T Consensus 189 --~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~ 266 (377)
T TIGR03300 189 --ADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWK 266 (377)
T ss_pred --ECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEe
Confidence 1346788888999999999988766443211110 111110000111 345677778899999999999876553
Q ss_pred ccccceeeeccCcEEEEEechhccCCCcEEEeecCceeEeeeccchhhhcc
Q 000722 253 LVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRR 303 (1331)
Q Consensus 253 ~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~ 303 (1331)
.. .. ....... .+..++.++.||.|..+|..+++.+.+
T Consensus 267 ~~----~~----~~~~p~~-----~~~~vyv~~~~G~l~~~d~~tG~~~W~ 304 (377)
T TIGR03300 267 RD----AS----SYQGPAV-----DDNRLYVTDADGVVVALDRRSGSELWK 304 (377)
T ss_pred ec----cC----CccCceE-----eCCEEEEECCCCeEEEEECCCCcEEEc
Confidence 21 11 1112222 345777888999999999999886544
No 287
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=97.77 E-value=6.9e-05 Score=82.96 Aligned_cols=222 Identities=13% Similarity=0.177 Sum_probs=130.8
Q ss_pred cccceeeehhhcccCCCcceEeecCCCceeeeeehhhhe-e----ehhhcCCCc------------cchhhhhHhhhccc
Q 000722 164 NKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWK-L----VRRYTGGHK------------GSISCLMTFMASSG 226 (1331)
Q Consensus 164 ~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~~-~----v~~~~~gH~------------~~V~~vawf~~spd 226 (1331)
.+.|++|.| ...|.++++|...|.|.+|.-.... | ...|. +|. ..|+.+.|| -...
T Consensus 26 ad~ItaVef-----d~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQ-she~EFDYLkSleieEKin~I~w~-~~t~ 98 (460)
T COG5170 26 ADKITAVEF-----DETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQ-SHELEFDYLKSLEIEEKINAIEWF-DDTG 98 (460)
T ss_pred cceeeEEEe-----ccccceEeecCCCceEEEeecccccccchhhhhhhc-ccccchhhhhhccHHHHhhheeee-cCCC
Confidence 467899999 6789999999999999999765322 2 12233 443 457888886 3333
Q ss_pred cEEEeecCCCceEEEEeccCCCc-------------------c------------c-----ccccccee-eeccCcEEEE
Q 000722 227 EALLVSGGSDGLLILWSADHGQD-------------------S------------R-----ELVPKLSL-KAHDGGVVAV 269 (1331)
Q Consensus 227 g~lLaSgs~DgtIrVWDl~tg~~-------------------~------------~-----~~~~~~~l-~gH~~~V~sv 269 (1331)
...++..+.|.+|++|.+..... + + ...|.+.. ..|...++++
T Consensus 99 r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSi 178 (460)
T COG5170 99 RNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSI 178 (460)
T ss_pred cceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeee
Confidence 44666678999999998754310 0 0 00111112 4577778999
Q ss_pred EechhccCCCcEEEeecCceeEeeeccchhhhcc---cCCCCcccccccccccCCCCCCCc--eeeeeecce--eeeeec
Q 000722 270 ELSRVMGGSPQLITIGADKTLAIWDTVSFKELRR---IKPVPKLACHSVASWCHPRAPNLD--ILTCVKDSH--IWAIEH 342 (1331)
Q Consensus 270 afsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~---~~~~~~l~~H~~~V~svafspdg~--lLa~s~Dg~--IWdl~~ 342 (1331)
.|.. +...+++ ++|-.|.+|++.-...... ++| ..+..-+.-|++..|+|... +.-.+..|. +-|++.
T Consensus 179 S~Ns---D~et~lS-aDdLrINLWnl~i~D~sFnIVDiKP-~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq 253 (460)
T COG5170 179 SFNS---DKETLLS-ADDLRINLWNLEIIDGSFNIVDIKP-HNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQ 253 (460)
T ss_pred eecC---chheeee-ccceeeeeccccccCCceEEEeccC-ccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhh
Confidence 9987 6666665 4688999999864321111 111 12333445678899999755 333444453 667664
Q ss_pred Ccccccccccccc-ccCCCccccccccceEEEEEEeccCCccEeeecceeEEEEeecCCC
Q 000722 343 PTYSALTRPLCEL-SSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPR 401 (1331)
Q Consensus 343 ~~~~~l~~~~~~~-~~~~~~~~l~~h~~~~I~~la~sp~~~~lLAtGs~DG~Il~VWDlr 401 (1331)
.........+... .......-+..-.. .|..+.|++ .++++++-+.-.+ ++||.+
T Consensus 254 ~alcdn~~klfe~~~D~v~~~ff~eivs-SISD~kFs~-ngryIlsRdyltv--kiwDvn 309 (460)
T COG5170 254 SALCDNSKKLFELTIDGVDVDFFEEIVS-SISDFKFSD-NGRYILSRDYLTV--KIWDVN 309 (460)
T ss_pred hhhccCchhhhhhccCcccchhHHHHhh-hhcceEEcC-CCcEEEEeccceE--EEEecc
Confidence 3222221111111 11111112222223 688999999 5776776655443 799986
No 288
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=97.75 E-value=0.00045 Score=93.06 Aligned_cols=208 Identities=10% Similarity=-0.016 Sum_probs=119.8
Q ss_pred cCCCCCCCCceEEEEEeeccee-EeeeecccCCCCCc-------ccc-------ccccceeeehhhcccCC-CcceEeec
Q 000722 124 ASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPK-------QEL-------DNKSLVCMEFLSRSAVG-DVPLVAFG 187 (1331)
Q Consensus 124 ~svafspdg~~lLasgs~d~iI-vwDl~t~~~~~i~~-------~~~-------h~~~V~~Vaf~P~s~Sp-dg~~LasG 187 (1331)
..+++++++..++++...++.+ ++|..++....+.. ..+ .-.....++| ++ ++.++++.
T Consensus 627 ~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~-----dp~~g~LyVad 701 (1057)
T PLN02919 627 QGLAYNAKKNLLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCF-----EPVNEKVYIAM 701 (1057)
T ss_pred cEEEEeCCCCEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEE-----ecCCCeEEEEE
Confidence 4566777776455655555555 56765533211100 000 0123457888 55 56677787
Q ss_pred CCCceeeeeehhhheeehhhc--------CCCc------cchhhhhHhhhccccE-EEeecCCCceEEEEeccCCCcccc
Q 000722 188 SSDGVIRVLSMISWKLVRRYT--------GGHK------GSISCLMTFMASSGEA-LLVSGGSDGLLILWSADHGQDSRE 252 (1331)
Q Consensus 188 s~DGtIrlWDl~t~~~v~~~~--------~gH~------~~V~~vawf~~spdg~-lLaSgs~DgtIrVWDl~tg~~~~~ 252 (1331)
+.++.|++||..++.... +. .++. .....++ ++++++ ++++-+.++.|++||+.++.....
T Consensus 702 ~~~~~I~v~d~~~g~v~~-~~G~G~~~~~~g~~~~~~~~~~P~GIa---vspdG~~LYVADs~n~~Irv~D~~tg~~~~~ 777 (1057)
T PLN02919 702 AGQHQIWEYNISDGVTRV-FSGDGYERNLNGSSGTSTSFAQPSGIS---LSPDLKELYIADSESSSIRALDLKTGGSRLL 777 (1057)
T ss_pred CCCCeEEEEECCCCeEEE-EecCCccccCCCCccccccccCccEEE---EeCCCCEEEEEECCCCeEEEEECCCCcEEEE
Confidence 888999999987764321 11 0111 1233454 678876 667777889999999987542100
Q ss_pred c-------cccceeee--------ccCcEEEEEechhccCCCcEEEeecCceeEeeeccchhhhcccCCC-------Ccc
Q 000722 253 L-------VPKLSLKA--------HDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPV-------PKL 310 (1331)
Q Consensus 253 ~-------~~~~~l~g--------H~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~-------~~l 310 (1331)
. .....+.. .-....++++++ ++.++++-+.+++|++||..++......... ...
T Consensus 778 ~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~---dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~ 854 (1057)
T PLN02919 778 AGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAK---DGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKAL 854 (1057)
T ss_pred EecccccCcccccccCCCCchhhhhccCCceeeEeC---CCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCccc
Confidence 0 00000110 111246889998 7888899999999999999876543221100 011
Q ss_pred cccccccccCCCCCCCceee-eeecce--eeeeecC
Q 000722 311 ACHSVASWCHPRAPNLDILT-CVKDSH--IWAIEHP 343 (1331)
Q Consensus 311 ~~H~~~V~svafspdg~lLa-~s~Dg~--IWdl~~~ 343 (1331)
.++......++++++|+++. .+.+++ +||+.+.
T Consensus 855 ~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~ 890 (1057)
T PLN02919 855 KAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKG 890 (1057)
T ss_pred ccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCC
Confidence 22233456788899998654 445554 6877654
No 289
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=97.74 E-value=0.0038 Score=73.08 Aligned_cols=168 Identities=14% Similarity=0.094 Sum_probs=120.1
Q ss_pred CCceEEEEEeecceeEeeeecccCCCCCccccccccceeeehhhcccCCCcceEeecCCCc-eeeeeehhhheeehhhcC
Q 000722 131 KGRHFLVICCVNKAIFLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDG-VIRVLSMISWKLVRRYTG 209 (1331)
Q Consensus 131 dg~~lLasgs~d~iIvwDl~t~~~~~i~~~~~h~~~V~~Vaf~P~s~Spdg~~LasGs~DG-tIrlWDl~t~~~v~~~~~ 209 (1331)
+|+ +++..+.++..+.+...+- ....+|...|+-..+ ..+++-++.|..|| .+-|||..+++..+. .
T Consensus 331 ~Gd-~ia~VSRGkaFi~~~~~~~----~iqv~~~~~VrY~r~-----~~~~e~~vigt~dgD~l~iyd~~~~e~kr~-e- 398 (668)
T COG4946 331 NGD-YIALVSRGKAFIMRPWDGY----SIQVGKKGGVRYRRI-----QVDPEGDVIGTNDGDKLGIYDKDGGEVKRI-E- 398 (668)
T ss_pred CCc-EEEEEecCcEEEECCCCCe----eEEcCCCCceEEEEE-----ccCCcceEEeccCCceEEEEecCCceEEEe-e-
Confidence 354 7777787777655443321 123455666777777 45677889999999 999999998765443 3
Q ss_pred CCccchhhhhHhhhccccEEEeecCCCceEEEEeccCCCccccccccceeeeccCcEEEEEechhccCCCcEEEeecCc-
Q 000722 210 GHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADK- 288 (1331)
Q Consensus 210 gH~~~V~~vawf~~spdg~lLaSgs~DgtIrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg- 288 (1331)
+.-+.|.++. .+++|+.++.+.....+-+.|+.++...- .-+...+-|+..+||| ++++|+-+--+|
T Consensus 399 ~~lg~I~av~---vs~dGK~~vvaNdr~el~vididngnv~~------idkS~~~lItdf~~~~---nsr~iAYafP~gy 466 (668)
T COG4946 399 KDLGNIEAVK---VSPDGKKVVVANDRFELWVIDIDNGNVRL------IDKSEYGLITDFDWHP---NSRWIAYAFPEGY 466 (668)
T ss_pred CCccceEEEE---EcCCCcEEEEEcCceEEEEEEecCCCeeE------ecccccceeEEEEEcC---CceeEEEecCcce
Confidence 5667888887 89999999999999999999999986321 1134456799999999 889999776554
Q ss_pred ---eeEeeeccchhhhcccCCCCcccccccccccCCCCCCCcee
Q 000722 289 ---TLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDIL 329 (1331)
Q Consensus 289 ---~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg~lL 329 (1331)
.|+++|+.+++.... +..+..=.+=+|.|++++|
T Consensus 467 ~tq~Iklydm~~~Kiy~v-------TT~ta~DfsPaFD~d~ryL 503 (668)
T COG4946 467 YTQSIKLYDMDGGKIYDV-------TTPTAYDFSPAFDPDGRYL 503 (668)
T ss_pred eeeeEEEEecCCCeEEEe-------cCCcccccCcccCCCCcEE
Confidence 689999998875443 1122222356788999855
No 290
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=97.73 E-value=0.00033 Score=82.63 Aligned_cols=291 Identities=11% Similarity=0.017 Sum_probs=159.4
Q ss_pred CCCcEEEEEeecCCceeEeecCCCceeeeccccceEEeeeccCCcccchhhh--hhhhhhcccccccCCCCcccccCCce
Q 000722 10 TNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVG--AKLEKLAEGELEHKGKPTEAMRGGSV 87 (1331)
Q Consensus 10 Hs~~V~~lafSPdg~~LaSgs~DGtV~VWD~~tg~~i~s~~~~~~~~i~~vs--pdg~~Lasgs~d~~g~~l~~l~gg~V 87 (1331)
-.-.+..+.|||.|.+|++... ..|.+|+...+..+..+... .+..++ |.+++|.+-+..+...+- ....++
T Consensus 31 ~~~p~~~~~~SP~G~~l~~~~~-~~V~~~~g~~~~~l~~~~~~---~V~~~~fSP~~kYL~tw~~~pi~~pe--~e~sp~ 104 (561)
T COG5354 31 ENWPVAYVSESPLGTYLFSEHA-AGVECWGGPSKAKLVRFRHP---DVKYLDFSPNEKYLVTWSREPIIEPE--IEISPF 104 (561)
T ss_pred cCcchhheeecCcchheehhhc-cceEEccccchhheeeeecC---CceecccCcccceeeeeccCCccChh--hccCCc
Confidence 4457889999999999998754 45899998877666655522 233333 777777665433211000 001111
Q ss_pred eEEeeecchhhHHHHhhhccccccCCcccccccc-ccc-CCCCCCCCceEEEEEeecceeEeeeecccCCCCCccccccc
Q 000722 88 KQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTS-GFA-SPPPSTKGRHFLVICCVNKAIFLDLVTMRGRDIPKQELDNK 165 (1331)
Q Consensus 88 ~sVaf~DgtIrvWdl~tg~~l~~~~~~~~~~~~~-~V~-svafspdg~~lLasgs~d~iIvwDl~t~~~~~i~~~~~h~~ 165 (1331)
+ .+..+.+||+.++..+.. ..+.... ..+ -+.|+-+.+ +++=-..+.++++++ +.+............
T Consensus 105 ~----~~n~~~vwd~~sg~iv~s----f~~~~q~~~~Wp~~k~s~~D~-y~ARvv~~sl~i~e~-t~n~~~~p~~~lr~~ 174 (561)
T COG5354 105 T----SKNNVFVWDIASGMIVFS----FNGISQPYLGWPVLKFSIDDK-YVARVVGSSLYIHEI-TDNIEEHPFKNLRPV 174 (561)
T ss_pred c----ccCceeEEeccCceeEee----ccccCCcccccceeeeeecch-hhhhhccCeEEEEec-CCccccCchhhcccc
Confidence 1 356789999988865421 1111011 122 456777765 444334455556665 443333222233346
Q ss_pred cceeeehhhcccCCCcceEee-----cCCCceeeeeehhhheeehhhcCCCccchhhhhHhhhccccEEEeec-------
Q 000722 166 SLVCMEFLSRSAVGDVPLVAF-----GSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSG------- 233 (1331)
Q Consensus 166 ~V~~Vaf~P~s~Spdg~~Las-----Gs~DGtIrlWDl~t~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSg------- 233 (1331)
.|....|+|.. ++..|+. ++.++++++|.+..+..+..-. -....-..+.| ++.|+.|+.-
T Consensus 175 gi~dFsisP~~---n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~-lfk~~~~qLkW---~~~g~~ll~l~~t~~ks 247 (561)
T COG5354 175 GILDFSISPEG---NHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKN-LFKVSGVQLKW---QVLGKYLLVLVMTHTKS 247 (561)
T ss_pred ceeeEEecCCC---CCceEEEEccccCCCCcEEEEEEccCCCeeeeee-eEeecccEEEE---ecCCceEEEEEEEeeec
Confidence 77888886532 2333443 4578899999987554443211 01111112222 3334333210
Q ss_pred ----CCCceEEEEeccCCCccccccccceeeeccCcEEEEEechhccCCCcEEE--eecCceeEeeeccchhhhcccCCC
Q 000722 234 ----GSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLIT--IGADKTLAIWDTVSFKELRRIKPV 307 (1331)
Q Consensus 234 ----s~DgtIrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaS--gs~Dg~IrIWDl~t~~~l~~~~~~ 307 (1331)
-....+.++++....+ . ...+-.++|...+|.| .++.+++ |-.+-.+.++|++.. ....
T Consensus 248 nKsyfgesnLyl~~~~e~~i-~------V~~~~~~pVhdf~W~p---~S~~F~vi~g~~pa~~s~~~lr~N-l~~~---- 312 (561)
T COG5354 248 NKSYFGESNLYLLRITERSI-P------VEKDLKDPVHDFTWEP---LSSRFAVISGYMPASVSVFDLRGN-LRFY---- 312 (561)
T ss_pred ccceeccceEEEEeeccccc-c------eeccccccceeeeecc---cCCceeEEecccccceeecccccc-eEEe----
Confidence 0124567777763321 1 1125578899999999 4555544 457889999998865 2222
Q ss_pred CcccccccccccCCCCCCCcee-eeeecce-----eeeeec
Q 000722 308 PKLACHSVASWCHPRAPNLDIL-TCVKDSH-----IWAIEH 342 (1331)
Q Consensus 308 ~~l~~H~~~V~svafspdg~lL-a~s~Dg~-----IWdl~~ 342 (1331)
.....-..+.|+|.++++ .+|-|+. +||...
T Consensus 313 ----~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~ 349 (561)
T COG5354 313 ----FPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAG 349 (561)
T ss_pred ----cCCcccccccccCcccEEEEecCCccccceEEeccCC
Confidence 111222357799998854 6665552 677654
No 291
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=97.69 E-value=6e-05 Score=84.81 Aligned_cols=144 Identities=19% Similarity=0.221 Sum_probs=103.8
Q ss_pred cccccCCCCCCCCceEEEEEeeccee-Eeeeeccc---CCCCCccccccccceeeehhhcccCCCcceEeecCCCceeee
Q 000722 120 TSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMR---GRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRV 195 (1331)
Q Consensus 120 ~~~V~svafspdg~~lLasgs~d~iI-vwDl~t~~---~~~i~~~~~h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrl 195 (1331)
.+.|.++.|+..++ ++..|+.++.| .+|++... ..+ .....|+..|+|+..+ .-++++|++.+.+|+|++
T Consensus 252 ksDVfAlQf~~s~n-Lv~~GcRngeI~~iDLR~rnqG~~~~-a~rlyh~Ssvtslq~L----q~s~q~LmaS~M~gkikL 325 (425)
T KOG2695|consen 252 KSDVFALQFAGSDN-LVFNGCRNGEIFVIDLRCRNQGNGWC-AQRLYHDSSVTSLQIL----QFSQQKLMASDMTGKIKL 325 (425)
T ss_pred chhHHHHHhcccCC-eeEecccCCcEEEEEeeecccCCCcc-eEEEEcCcchhhhhhh----ccccceEeeccCcCceeE
Confidence 45778888988777 77778777766 67998642 222 2345788999998875 236889999999999999
Q ss_pred eehhhhee---ehhhcCCCccchhhhhHhhhccccEEEeecCCCceEEEEeccCCCccccccccceeeeccCcEEEEEec
Q 000722 196 LSMISWKL---VRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELS 272 (1331)
Q Consensus 196 WDl~t~~~---v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafs 272 (1331)
||++--++ +..+. ||-..-.-+- +...+....+++++.|...|+|.++.++.+.+... .....+..+.+++|.
T Consensus 326 yD~R~~K~~~~V~qYe-GHvN~~a~l~-~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf--~~s~~e~d~~sv~~~ 401 (425)
T KOG2695|consen 326 YDLRATKCKKSVMQYE-GHVNLSAYLP-AHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPF--PYSASEVDIPSVAFD 401 (425)
T ss_pred eeehhhhcccceeeee-cccccccccc-cccccccceEEEccCeeEEEEEecccCceeeccCC--CCccccccccceehh
Confidence 99987666 77776 8866555443 23567777888999999999999999987765321 122333345666665
Q ss_pred h
Q 000722 273 R 273 (1331)
Q Consensus 273 p 273 (1331)
.
T Consensus 402 s 402 (425)
T KOG2695|consen 402 S 402 (425)
T ss_pred c
Confidence 3
No 292
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=97.67 E-value=8.7e-05 Score=82.17 Aligned_cols=210 Identities=12% Similarity=0.124 Sum_probs=125.5
Q ss_pred cccccCCCCCCCCceEEEEEeeccee-Eee-eecccCC--CCCccccc------------cccceeeehhhcccCCCc-c
Q 000722 120 TSGFASPPPSTKGRHFLVICCVNKAI-FLD-LVTMRGR--DIPKQELD------------NKSLVCMEFLSRSAVGDV-P 182 (1331)
Q Consensus 120 ~~~V~svafspdg~~lLasgs~d~iI-vwD-l~t~~~~--~i~~~~~h------------~~~V~~Vaf~P~s~Spdg-~ 182 (1331)
...|+++.|...|. ++++|..++.+ ++. -....+. ....+..| ...|..+.|.. +.+ .
T Consensus 26 ad~ItaVefd~tg~-YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~----~t~r~ 100 (460)
T COG5170 26 ADKITAVEFDETGL-YLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFD----DTGRN 100 (460)
T ss_pred cceeeEEEeccccc-eEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeec----CCCcc
Confidence 34678888998886 88888777666 552 2221111 11122333 23577778852 222 3
Q ss_pred eEeecCCCceeeeeehhhhee------------------------------------------ehhhcCCCccchhhhhH
Q 000722 183 LVAFGSSDGVIRVLSMISWKL------------------------------------------VRRYTGGHKGSISCLMT 220 (1331)
Q Consensus 183 ~LasGs~DGtIrlWDl~t~~~------------------------------------------v~~~~~gH~~~V~~vaw 220 (1331)
.++..+.|.+|++|.+..... .+.+...|.-.++++.
T Consensus 101 hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS- 179 (460)
T COG5170 101 HFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSIS- 179 (460)
T ss_pred eEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeee-
Confidence 455666899999998753200 0111134666667776
Q ss_pred hhhccccEEEeecCCCceEEEEeccCCCccccccccceeeecc-----CcEEEEEechhccCCCcEEEeecCceeEeeec
Q 000722 221 FMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHD-----GGVVAVELSRVMGGSPQLITIGADKTLAIWDT 295 (1331)
Q Consensus 221 f~~spdg~lLaSgs~DgtIrVWDl~tg~~~~~~~~~~~l~gH~-----~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl 295 (1331)
++.|...+++ +.|-.|.+|++.-...... ...++.|. .-|++..|||. ....+.-.+..|.|++-|+
T Consensus 180 --~NsD~et~lS-aDdLrINLWnl~i~D~sFn---IVDiKP~nmeeLteVItSaeFhp~--~cn~fmYSsSkG~Ikl~Dl 251 (460)
T COG5170 180 --FNSDKETLLS-ADDLRINLWNLEIIDGSFN---IVDIKPHNMEELTEVITSAEFHPE--MCNVFMYSSSKGEIKLNDL 251 (460)
T ss_pred --ecCchheeee-ccceeeeeccccccCCceE---EEeccCccHHHHHHHHhhcccCHh--HcceEEEecCCCcEEehhh
Confidence 5666666665 5688899999875432111 11123332 35889999993 5667777888999999999
Q ss_pred cchhh-h---ccc----CC--CCcccccccccccCCCCCCCceeeeeecc--eeeeeecC
Q 000722 296 VSFKE-L---RRI----KP--VPKLACHSVASWCHPRAPNLDILTCVKDS--HIWAIEHP 343 (1331)
Q Consensus 296 ~t~~~-l---~~~----~~--~~~l~~H~~~V~svafspdg~lLa~s~Dg--~IWdl~~~ 343 (1331)
+.... . ..+ .+ +.-+.+-...|..+.|+++|+++.+-.-. +|||++..
T Consensus 252 Rq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~ 311 (460)
T COG5170 252 RQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMA 311 (460)
T ss_pred hhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEEEEecccc
Confidence 84321 1 011 11 11123334567788999999977554333 48999864
No 293
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=97.66 E-value=0.004 Score=72.86 Aligned_cols=189 Identities=14% Similarity=0.082 Sum_probs=119.2
Q ss_pred cCCCcceEeecCCCceeeeeehhhheeehhhc-------CCCccchhhhhH--hhhccccEEEeecCCCceEEEEeccCC
Q 000722 177 AVGDVPLVAFGSSDGVIRVLSMISWKLVRRYT-------GGHKGSISCLMT--FMASSGEALLVSGGSDGLLILWSADHG 247 (1331)
Q Consensus 177 ~Spdg~~LasGs~DGtIrlWDl~t~~~v~~~~-------~gH~~~V~~vaw--f~~spdg~lLaSgs~DgtIrVWDl~tg 247 (1331)
.+.||+.|+.. ..|.|.+||..+.+..+.=. ......+.-..+ .+...+|++++..|. |...+.+...+
T Consensus 274 ~nsDGkrIvFq-~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~~~~ 351 (668)
T COG4946 274 ANSDGKRIVFQ-NAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRPWDG 351 (668)
T ss_pred cCCCCcEEEEe-cCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECCCCC
Confidence 35688887765 56789999998653321100 001111111111 012346778777665 45555555444
Q ss_pred CccccccccceeeeccCcEEEEEechhccCCCcEEEeecCc-eeEeeeccchhhhcccCCCCcccccccccccCCCCCCC
Q 000722 248 QDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADK-TLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNL 326 (1331)
Q Consensus 248 ~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg-~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg 326 (1331)
-.+ .-+|..+|.-..+.. +..-++.|..|| .+-|+|..+++..+ +...-+.|.++..+++|
T Consensus 352 ~~i--------qv~~~~~VrY~r~~~---~~e~~vigt~dgD~l~iyd~~~~e~kr-------~e~~lg~I~av~vs~dG 413 (668)
T COG4946 352 YSI--------QVGKKGGVRYRRIQV---DPEGDVIGTNDGDKLGIYDKDGGEVKR-------IEKDLGNIEAVKVSPDG 413 (668)
T ss_pred eeE--------EcCCCCceEEEEEcc---CCcceEEeccCCceEEEEecCCceEEE-------eeCCccceEEEEEcCCC
Confidence 322 246778888888876 667899999999 89999999877432 34556778899999999
Q ss_pred ceeeeeecc-eeeeee--cCccccccccccccccCCCccccccccceEEEEEEeccCCccEeeecceeEEE---EeecCC
Q 000722 327 DILTCVKDS-HIWAIE--HPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVI---ISEFDP 400 (1331)
Q Consensus 327 ~lLa~s~Dg-~IWdl~--~~~~~~l~~~~~~~~~~~~~~~l~~h~~~~I~~la~sp~~~~lLAtGs~DG~I---l~VWDl 400 (1331)
+.++.+.|. .||-+. ++. ..........-|+.++||| ++..+|-+--+|.+ |+++|+
T Consensus 414 K~~vvaNdr~el~vididngn----------------v~~idkS~~~lItdf~~~~-nsr~iAYafP~gy~tq~Iklydm 476 (668)
T COG4946 414 KKVVVANDRFELWVIDIDNGN----------------VRLIDKSEYGLITDFDWHP-NSRWIAYAFPEGYYTQSIKLYDM 476 (668)
T ss_pred cEEEEEcCceEEEEEEecCCC----------------eeEecccccceeEEEEEcC-CceeEEEecCcceeeeeEEEEec
Confidence 988777776 577554 331 1122222223799999999 57778877666642 278887
Q ss_pred CC
Q 000722 401 RS 402 (1331)
Q Consensus 401 r~ 402 (1331)
..
T Consensus 477 ~~ 478 (668)
T COG4946 477 DG 478 (668)
T ss_pred CC
Confidence 54
No 294
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=97.63 E-value=0.0025 Score=75.37 Aligned_cols=247 Identities=12% Similarity=0.051 Sum_probs=123.8
Q ss_pred CCCCCceEEEEEe---------eccee-EeeeecccCCCCCcccc-------ccccceeeehhhcccCCCcceEeecC-C
Q 000722 128 PSTKGRHFLVICC---------VNKAI-FLDLVTMRGRDIPKQEL-------DNKSLVCMEFLSRSAVGDVPLVAFGS-S 189 (1331)
Q Consensus 128 fspdg~~lLasgs---------~d~iI-vwDl~t~~~~~i~~~~~-------h~~~V~~Vaf~P~s~Spdg~~LasGs-~ 189 (1331)
++||++.++++.+ ++..+ +||..+.+.. ..+.. .......+++ ++||+++++.. .
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~--~~i~~p~~p~~~~~~~~~~~~l-----s~dgk~l~V~n~~ 125 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPI--ADIELPEGPRFLVGTYPWMTSL-----TPDNKTLLFYQFS 125 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEE--eEEccCCCchhhccCccceEEE-----CCCCCEEEEecCC
Confidence 6888886666666 45555 8899986532 11111 1223346777 78999988766 4
Q ss_pred -CceeeeeehhhheeehhhcCCCccchhhhhHhhhccccEEEeecCCCceEEEEeccCCCccccccccceeeeccCcEE-
Q 000722 190 -DGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVV- 267 (1331)
Q Consensus 190 -DGtIrlWDl~t~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrVWDl~tg~~~~~~~~~~~l~gH~~~V~- 267 (1331)
+..|.+.|+.+++.+..+.-+-...+ | ...+...+ .-+.||......+.+...... .....+.+-...+.
T Consensus 126 p~~~V~VvD~~~~kvv~ei~vp~~~~v-----y-~t~e~~~~-~~~~Dg~~~~v~~d~~g~~~~-~~~~vf~~~~~~v~~ 197 (352)
T TIGR02658 126 PSPAVGVVDLEGKAFVRMMDVPDCYHI-----F-PTANDTFF-MHCRDGSLAKVGYGTKGNPKI-KPTEVFHPEDEYLIN 197 (352)
T ss_pred CCCEEEEEECCCCcEEEEEeCCCCcEE-----E-EecCCccE-EEeecCceEEEEecCCCceEE-eeeeeecCCcccccc
Confidence 79999999999998887752111111 1 11111112 223455544433322111110 00000111000000
Q ss_pred EEEechhccCCCcEEEeecCceeEeeeccchh-----hhcccCCCCc-ccccccccccCCCCCCCcee-e-e-ee-----
Q 000722 268 AVELSRVMGGSPQLITIGADKTLAIWDTVSFK-----ELRRIKPVPK-LACHSVASWCHPRAPNLDIL-T-C-VK----- 333 (1331)
Q Consensus 268 svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~-----~l~~~~~~~~-l~~H~~~V~svafspdg~lL-a-~-s~----- 333 (1331)
.-.|.+ .++.++..... |+|.+.|+.... .+..+..... -.-+.....-++++++++.+ . . +.
T Consensus 198 rP~~~~--~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~th 274 (352)
T TIGR02658 198 HPAYSN--KSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTH 274 (352)
T ss_pred CCceEc--CCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccc
Confidence 003343 25666666555 999999965432 2221110000 00122233348889887744 2 2 11
Q ss_pred -c--ceeeeeecCccccccccccccccCCCccccccccceEEEEEEeccCCc-cEeeecceeEEEEeecCCCCCCCCCC
Q 000722 334 -D--SHIWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQP-HLVATGTNVGVIISEFDPRSLPAVAP 408 (1331)
Q Consensus 334 -D--g~IWdl~~~~~~~l~~~~~~~~~~~~~~~l~~h~~~~I~~la~sp~~~-~lLAtGs~DG~Il~VWDlr~~p~i~~ 408 (1331)
+ ++||-++..+. +.+..+.. +. +++.++++|++. .++++...++.| .++|..+...+..
T Consensus 275 k~~~~~V~ViD~~t~-------------kvi~~i~v-G~-~~~~iavS~Dgkp~lyvtn~~s~~V-sViD~~t~k~i~~ 337 (352)
T TIGR02658 275 KTASRFLFVVDAKTG-------------KRLRKIEL-GH-EIDSINVSQDAKPLLYALSTGDKTL-YIFDAETGKELSS 337 (352)
T ss_pred cCCCCEEEEEECCCC-------------eEEEEEeC-CC-ceeeEEECCCCCeEEEEeCCCCCcE-EEEECcCCeEEee
Confidence 1 24665554221 11112221 23 799999999755 444455467776 7999876544444
No 295
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=97.63 E-value=0.00015 Score=90.04 Aligned_cols=140 Identities=16% Similarity=0.235 Sum_probs=100.5
Q ss_pred ceEEEEEeecceeEeeeecccCCCCCccccccccceeeehhhcccCCCcceEeecCCCceeeeeehhhheeehhhcCCCc
Q 000722 133 RHFLVICCVNKAIFLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHK 212 (1331)
Q Consensus 133 ~~lLasgs~d~iIvwDl~t~~~~~i~~~~~h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~~~v~~~~~gH~ 212 (1331)
..++..|-.+.++.+|+++.+... ........|+-+.. +++++.+|...|+|.+-|..+.+.++++. .|+
T Consensus 148 ~~~i~Gg~Q~~li~~Dl~~~~e~r--~~~v~a~~v~imR~-------Nnr~lf~G~t~G~V~LrD~~s~~~iht~~-aHs 217 (1118)
T KOG1275|consen 148 STLIMGGLQEKLIHIDLNTEKETR--TTNVSASGVTIMRY-------NNRNLFCGDTRGTVFLRDPNSFETIHTFD-AHS 217 (1118)
T ss_pred cceeecchhhheeeeecccceeee--eeeccCCceEEEEe-------cCcEEEeecccceEEeecCCcCceeeeee-ccc
Confidence 336677777788888998854322 22333334666666 78999999999999999999999999997 999
Q ss_pred cchhhhhHhhhccccEEEeecCC---------CceEEEEeccCCCccccccccceeeeccCcEEEEEechhccCCCcEEE
Q 000722 213 GSISCLMTFMASSGEALLVSGGS---------DGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLIT 283 (1331)
Q Consensus 213 ~~V~~vawf~~spdg~lLaSgs~---------DgtIrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaS 283 (1331)
+.|..+. -.|++|++||. |..|+|||++.-+.+. | +.-|.+ ..-+.|+|. -...+++
T Consensus 218 ~siSDfD-----v~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~---P---I~~~~~-P~flrf~Ps--l~t~~~V 283 (1118)
T KOG1275|consen 218 GSISDFD-----VQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALS---P---IQFPYG-PQFLRFHPS--LTTRLAV 283 (1118)
T ss_pred cceeeee-----ccCCeEEEeecccccccccccchhhhhhhhhhhccC---C---cccccC-chhhhhccc--ccceEEE
Confidence 9998654 47889999875 5568999998765432 2 222222 245778883 4467788
Q ss_pred eecCceeEeeecc
Q 000722 284 IGADKTLAIWDTV 296 (1331)
Q Consensus 284 gs~Dg~IrIWDl~ 296 (1331)
++..|...+-|..
T Consensus 284 ~S~sGq~q~vd~~ 296 (1118)
T KOG1275|consen 284 TSQSGQFQFVDTA 296 (1118)
T ss_pred Eecccceeecccc
Confidence 8888888777743
No 296
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=97.61 E-value=0.00062 Score=91.76 Aligned_cols=165 Identities=10% Similarity=0.001 Sum_probs=101.1
Q ss_pred CCCCCCCCceEEEEEeeccee-EeeeecccCCCC------Cccc------cccccceeeehhhcccCCCcc-eEeecCCC
Q 000722 125 SPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDI------PKQE------LDNKSLVCMEFLSRSAVGDVP-LVAFGSSD 190 (1331)
Q Consensus 125 svafspdg~~lLasgs~d~iI-vwDl~t~~~~~i------~~~~------~h~~~V~~Vaf~P~s~Spdg~-~LasGs~D 190 (1331)
.++|+|++..++++...++.+ +||..++....+ .... ........|+| ++++. ++++-+.+
T Consensus 687 gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIav-----spdG~~LYVADs~n 761 (1057)
T PLN02919 687 DVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISL-----SPDLKELYIADSES 761 (1057)
T ss_pred EEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEE-----eCCCCEEEEEECCC
Confidence 567888544466766655555 677655322100 0000 01234566888 67887 55566678
Q ss_pred ceeeeeehhhheeehhh-----------cCC-Cc--------cchhhhhHhhhccccEEEeecCCCceEEEEeccCCCcc
Q 000722 191 GVIRVLSMISWKLVRRY-----------TGG-HK--------GSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDS 250 (1331)
Q Consensus 191 GtIrlWDl~t~~~v~~~-----------~~g-H~--------~~V~~vawf~~spdg~lLaSgs~DgtIrVWDl~tg~~~ 250 (1331)
+.|++||+.++...... ..+ +. .....++ ++++|+++++-+.+++|++||..++...
T Consensus 762 ~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gva---vd~dG~LYVADs~N~rIrviD~~tg~v~ 838 (1057)
T PLN02919 762 SSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVL---CAKDGQIYVADSYNHKIKKLDPATKRVT 838 (1057)
T ss_pred CeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceee---EeCCCcEEEEECCCCEEEEEECCCCeEE
Confidence 99999999865421100 000 00 1123443 6788899999999999999999876532
Q ss_pred cccccc-------ceeeeccCcEEEEEechhccCCCcEEEeecCceeEeeeccchhh
Q 000722 251 RELVPK-------LSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKE 300 (1331)
Q Consensus 251 ~~~~~~-------~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~ 300 (1331)
.....- ....++-.....+++++ +++++++-+.++.|++||+.+++.
T Consensus 839 tiaG~G~~G~~dG~~~~a~l~~P~GIavd~---dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 839 TLAGTGKAGFKDGKALKAQLSEPAGLALGE---NGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred EEeccCCcCCCCCcccccccCCceEEEEeC---CCCEEEEECCCCEEEEEECCCCcc
Confidence 110000 00122233577899998 788899999999999999988764
No 297
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.58 E-value=0.0018 Score=77.01 Aligned_cols=140 Identities=16% Similarity=0.198 Sum_probs=96.2
Q ss_pred ceeeehhhcccCCCcceEeecCCCceeeeeehhhheeehhhcCCCccchhhhhHhhhccccEEEeecCC-----------
Q 000722 167 LVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGS----------- 235 (1331)
Q Consensus 167 V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~----------- 235 (1331)
=+-+.| ||.|.||++-..-| |.+|--.+...++.|. |. .|.-+. |||+.++|+|-|.
T Consensus 213 etyv~w-----SP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~--Hp-~Vq~id---fSP~EkYLVT~s~~p~~~~~~d~e 280 (698)
T KOG2314|consen 213 ETYVRW-----SPKGTYLVTFHKQG-IALWGGESFDRIQRFY--HP-GVQFID---FSPNEKYLVTYSPEPIIVEEDDNE 280 (698)
T ss_pred eeeEEe-----cCCceEEEEEeccc-eeeecCccHHHHHhcc--CC-Cceeee---cCCccceEEEecCCccccCcccCC
Confidence 355788 78999999997776 8899888888888874 54 344454 8999999998653
Q ss_pred CceEEEEeccCCCccccccccceeeeccCcEEEEEechhccCCCcEEEeecCceeEeeeccchhhhcccCCCCccccccc
Q 000722 236 DGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSV 315 (1331)
Q Consensus 236 DgtIrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~ 315 (1331)
...++|||+.+|...+.+... .+....-.-..||. |+.+++.-.. ..|.||+..+...+.. -.-.-.
T Consensus 281 ~~~l~IWDI~tG~lkrsF~~~---~~~~~~WP~frWS~---DdKy~Arm~~-~sisIyEtpsf~lld~------Kslki~ 347 (698)
T KOG2314|consen 281 GQQLIIWDIATGLLKRSFPVI---KSPYLKWPIFRWSH---DDKYFARMTG-NSISIYETPSFMLLDK------KSLKIS 347 (698)
T ss_pred CceEEEEEccccchhcceecc---CCCccccceEEecc---CCceeEEecc-ceEEEEecCceeeecc------cccCCc
Confidence 257999999999876654221 11111112357887 7888887665 5688998765443221 122335
Q ss_pred ccccCCCCCCCceeee
Q 000722 316 ASWCHPRAPNLDILTC 331 (1331)
Q Consensus 316 ~V~svafspdg~lLa~ 331 (1331)
+|....|+|.+.+|+-
T Consensus 348 gIr~FswsP~~~llAY 363 (698)
T KOG2314|consen 348 GIRDFSWSPTSNLLAY 363 (698)
T ss_pred cccCcccCCCcceEEE
Confidence 6778899999888864
No 298
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.57 E-value=6.4e-05 Score=87.97 Aligned_cols=197 Identities=15% Similarity=0.196 Sum_probs=132.3
Q ss_pred cchhhHHHHhhhccc---------cccCCcccccccccccCCCCCCCCceEEEEEeeccee-Eeeeeccc-----CCCCC
Q 000722 94 DDDVRFWQLWRNRAA---------AAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMR-----GRDIP 158 (1331)
Q Consensus 94 DgtIrvWdl~tg~~l---------~~~~~~~~~~~~~~V~svafspdg~~lLasgs~d~iI-vwDl~t~~-----~~~i~ 158 (1331)
..-..+|..++.... +.......+| ...|+.+.--.+.+ -+++++.|+.+ .|.++..- ..+..
T Consensus 701 Gn~lA~W~~ets~~e~dt~~ln~~~irL~nf~GH-~~~iRai~AidNEN-SFiSASkDKTVKLWSik~EgD~~~tsaCQf 778 (1034)
T KOG4190|consen 701 GNLLAVWCAETSAAECDTDNLNFDHIRLCNFTGH-QEKIRAIAAIDNEN-SFISASKDKTVKLWSIKPEGDEIGTSACQF 778 (1034)
T ss_pred cchHHHHHhhhhHhhcCCcccccceeeeecccCc-HHHhHHHHhccccc-ceeeccCCceEEEEEeccccCccccceeee
Confidence 345677876554321 1112333444 45566554443343 67888888888 88776321 12445
Q ss_pred ccccccccceeeehhhcccCCCcceEeecCCCceeeeeehhhheeehhhc----CCCccchhhhhHhhhccccEEEeec-
Q 000722 159 KQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYT----GGHKGSISCLMTFMASSGEALLVSG- 233 (1331)
Q Consensus 159 ~~~~h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~~~v~~~~----~gH~~~V~~vawf~~spdg~lLaSg- 233 (1331)
+...|..+|..+.|. .+.++++++ ||.|.+||.--++.+..+. .+..+.|.|+. +-+..++..|
T Consensus 779 TY~aHkk~i~~igfL-----~~lr~i~Sc--D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~----nv~~~iliAgc 847 (1034)
T KOG4190|consen 779 TYQAHKKPIHDIGFL-----ADLRSIASC--DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLE----NVDRHILIAGC 847 (1034)
T ss_pred EhhhccCcccceeee-----eccceeeec--cCcceeecccccchhHhhhcCcccCCCceeEecc----cCcchheeeec
Confidence 668899999999994 456666655 8889999988777666442 23345566664 3344555544
Q ss_pred CCCceEEEEeccCCCccccccccceeeeccCcEEEEEechhccCCCcEEEeecCceeEeeeccchhhhcccCCC
Q 000722 234 GSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPV 307 (1331)
Q Consensus 234 s~DgtIrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~ 307 (1331)
+...+|+++|.+......++. +..-.+.+..+.+++..+ .|+.++.+-..|+|.+.|.++|+.+..+.+.
T Consensus 848 saeSTVKl~DaRsce~~~E~k-Vcna~~Pna~~R~iaVa~---~GN~lAa~LSnGci~~LDaR~G~vINswrpm 917 (1034)
T KOG4190|consen 848 SAESTVKLFDARSCEWTCELK-VCNAPGPNALTRAIAVAD---KGNKLAAALSNGCIAILDARNGKVINSWRPM 917 (1034)
T ss_pred cchhhheeeecccccceeeEE-eccCCCCchheeEEEecc---CcchhhHHhcCCcEEEEecCCCceeccCCcc
Confidence 789999999999887655432 112245566789999998 8999999999999999999999987776543
No 299
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=97.56 E-value=0.00011 Score=57.81 Aligned_cols=37 Identities=19% Similarity=0.377 Sum_probs=34.0
Q ss_pred ccceeeeccCcEEEEEechhccCCCcEEEeecCceeEeee
Q 000722 255 PKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWD 294 (1331)
Q Consensus 255 ~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWD 294 (1331)
+..++.+|...|++++|+| ++.+|++++.|++|++||
T Consensus 3 ~~~~~~~h~~~i~~i~~~~---~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 3 CVRTFRGHSSSINSIAWSP---DGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEESSSSSEEEEEEET---TSSEEEEEETTSEEEEEE
T ss_pred EEEEEcCCCCcEEEEEEec---ccccceeeCCCCEEEEEC
Confidence 3456899999999999999 799999999999999997
No 300
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=97.52 E-value=0.0017 Score=71.28 Aligned_cols=151 Identities=9% Similarity=-0.026 Sum_probs=100.9
Q ss_pred ceeeehhhcccCCCcceEeecCCCceeeeeehhh-hee-ehhhcCCCccchhhhhHhhhccccEEEeecCCCceEEEEec
Q 000722 167 LVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMIS-WKL-VRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSA 244 (1331)
Q Consensus 167 V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t-~~~-v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrVWDl 244 (1331)
+.++.+ +++++++++.++...|..|.+.. ++. ++......+..-.+.. ++.....|+++..||++.|||+
T Consensus 161 ~ns~~~-----snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S---~s~~~~~FAv~~Qdg~~~I~DV 232 (344)
T KOG4532|consen 161 QNSLHY-----SNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNS---FSENDLQFAVVFQDGTCAIYDV 232 (344)
T ss_pred eeeeEE-----cCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeee---eccCcceEEEEecCCcEEEEEe
Confidence 677888 78999999999999999998864 222 2322222333344444 5777889999999999999999
Q ss_pred cCCCccccccccceeeeccCcEEEEEechhccCCCcEEEeecCceeEeeeccchhhhcccCCCC-cccccccc-cccCCC
Q 000722 245 DHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVP-KLACHSVA-SWCHPR 322 (1331)
Q Consensus 245 ~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~-~l~~H~~~-V~svaf 322 (1331)
+........ ...+-..|.+.+..+.|++. +--.+|.-.-.-+.+.+.|+++++..+.+...+ ....|... +..-.|
T Consensus 233 R~~~tpm~~-~sstrp~hnGa~R~c~Fsl~-g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f 310 (344)
T KOG4532|consen 233 RNMATPMAE-ISSTRPHHNGAFRVCRFSLY-GLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNF 310 (344)
T ss_pred cccccchhh-hcccCCCCCCceEEEEecCC-CcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccc
Confidence 875422111 11122458999999999972 223455555567889999999988666553332 23344433 666677
Q ss_pred CCCCc
Q 000722 323 APNLD 327 (1331)
Q Consensus 323 spdg~ 327 (1331)
+.++.
T Consensus 311 ~~~n~ 315 (344)
T KOG4532|consen 311 NNENE 315 (344)
T ss_pred cCCCc
Confidence 76665
No 301
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.51 E-value=0.0002 Score=91.74 Aligned_cols=169 Identities=17% Similarity=0.036 Sum_probs=126.5
Q ss_pred CcceeeeecccCCchhhhHHHhhhccccchhHHHHHhhcccccccccCCCcccceeeeeccccchHHHHHHhhhhccccc
Q 000722 904 PGIRCRCLAAYGDSVSAVKWASRLGREHHDDLAQFMLGMGYATEALHLPGISKRLEFDLAMQSNDLKRALQCLITMSNSR 983 (1331)
Q Consensus 904 ~~~~~~~~~~~~~~~~a~~~~~~i~~~~~~~~a~fl~~~g~~e~Al~~~~ds~~~~f~la~~~g~l~~a~~~~~~~~~~~ 983 (1331)
..-+|+.=...|+|++|+.-+..++..+.+....|.+++|.+.+||.++.-.++.+-++. ...|..
T Consensus 883 ~~rkF~ID~~L~ry~~AL~hLs~~~~~~~~e~~n~I~kh~Ly~~aL~ly~~~~e~~k~i~---------~~ya~h----- 948 (1265)
T KOG1920|consen 883 LLRKFKIDDYLKRYEDALSHLSECGETYFPECKNYIKKHGLYDEALALYKPDSEKQKVIY---------EAYADH----- 948 (1265)
T ss_pred hhhheeHHHHHHHHHHHHHHHHHcCccccHHHHHHHHhcccchhhhheeccCHHHHHHHH---------HHHHHH-----
Confidence 344566666779999999999999999999999999999999999999844223322221 112211
Q ss_pred ccCCCCCCCChhhhcccccchhhHHHHHHHHHHHHHHHHhhhhccccccchHHHHHHHHHHHhcccccccccccccccch
Q 000722 984 DIGQDHPGLDLNDILTLTTKKENIVEAVQGIVKFAKEFLDLIDAADATGQANIAREALKRLAAAGSVKGALQGHELRGLA 1063 (1331)
Q Consensus 984 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~~~al~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~ 1063 (1331)
+-+. .+|..=+-.....|+++.|.+||+.+ + |+++++
T Consensus 949 -L~~~------------------------------~~~~~Aal~Ye~~GklekAl~a~~~~---~---------dWr~~l 985 (1265)
T KOG1920|consen 949 -LREE------------------------------LMSDEAALMYERCGKLEKALKAYKEC---G---------DWREAL 985 (1265)
T ss_pred -HHHh------------------------------ccccHHHHHHHHhccHHHHHHHHHHh---c---------cHHHHH
Confidence 1112 56766677788899999999999999 5 555555
Q ss_pred hhhcc-cccchhh----hhhhHHHHhhccChhhhhhhh-hcCchHHHHHHhhhhhhHHHHHHhhhccCCCcH
Q 000722 1064 LRLAN-HGELTRL----SGLVTNLISLGLGREAAFSAA-ILGDNALMEKAWQDTGMLAEAVLHAHAHGRPSL 1129 (1331)
Q Consensus 1064 ll~~~-~g~~~~l----~~l~~~~~~~~~~~~~af~~~-~lgd~~~~~~~l~~~~~~~~A~~~A~~~~~~~~ 1129 (1331)
-+... .-..+++ .+|+..+.++++...+|-+.. +++|+++++.+|++.-++.+|.+-|.-|+...+
T Consensus 986 ~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~~~av~ll~ka~~~~eAlrva~~~~~~d~ 1057 (1265)
T KOG1920|consen 986 SLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLSDPEEAVALLCKAKEWEEALRVASKAKRDDI 1057 (1265)
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcCHHHHHHHHhhHhHHHHHHHHHHhcccchH
Confidence 55542 2333333 467777888888867777766 999999999999999999999999999996543
No 302
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.46 E-value=5.5e-05 Score=90.90 Aligned_cols=214 Identities=16% Similarity=0.180 Sum_probs=137.0
Q ss_pred cccceeeehhhcccCCCcceEeecCCCceeeeeehhhheee-hhhcCCCccchhhhhHhhhccccEEEeecC----CCce
Q 000722 164 NKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLV-RRYTGGHKGSISCLMTFMASSGEALLVSGG----SDGL 238 (1331)
Q Consensus 164 ~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~~~v-~~~~~gH~~~V~~vawf~~spdg~lLaSgs----~Dgt 238 (1331)
..++.|+++.. +.+...++.|..+|.|-+-..+...-. ..+.++|..+.++++| ..-|.++|+.|- .|..
T Consensus 56 tqy~kcva~~y---~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAw--neLDtn~LAagldkhrnds~ 130 (783)
T KOG1008|consen 56 TQYVKCVASFY---GNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAW--NELDTNHLAAGLDKHRNDSS 130 (783)
T ss_pred CCCceeehhhc---CCchhhhhhccccCceEEeecCCcccccceeccccccccccccc--ccccHHHHHhhhhhhcccCC
Confidence 45788888843 334568899999999999887754333 4555689999999997 455677787763 3567
Q ss_pred EEEEeccCCCccccccccceeeeccCcEEEEEechhccCCCcEEEeecCceeEeeeccchhhhcccCCCCcccccccccc
Q 000722 239 LILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASW 318 (1331)
Q Consensus 239 IrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~ 318 (1331)
+.|||+.++-.+-.-.+.+. .+...+.++++|.. +.+++.+|...+.++++|++.... +. ....+..+.
T Consensus 131 ~~Iwdi~s~ltvPke~~~fs-~~~l~gqns~cwlr---d~klvlaGm~sr~~~ifdlRqs~~-~~------~svnTk~vq 199 (783)
T KOG1008|consen 131 LKIWDINSLLTVPKESPLFS-SSTLDGQNSVCWLR---DTKLVLAGMTSRSVHIFDLRQSLD-SV------SSVNTKYVQ 199 (783)
T ss_pred ccceecccccCCCccccccc-cccccCcccccccc---Ccchhhcccccchhhhhhhhhhhh-hh------hhhhhhhcc
Confidence 99999987622111011111 12445677889887 788999999999999999883221 11 122334455
Q ss_pred cCCCCC-CCceeeeeecce--eeeeecCccccccccccccccCCCccccccccceEEEEEEeccCCccEeeecceeEEEE
Q 000722 319 CHPRAP-NLDILTCVKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVII 395 (1331)
Q Consensus 319 svafsp-dg~lLa~s~Dg~--IWdl~~~~~~~l~~~~~~~~~~~~~~~l~~h~~~~I~~la~sp~~~~lLAtGs~DG~Il 395 (1331)
.+...| .+.+++...|+. +||.... ...++....... ....+ ++..++|+|...-++++...|...|
T Consensus 200 G~tVdp~~~nY~cs~~dg~iAiwD~~rn----ienpl~~i~~~~-----N~~~~-~l~~~aycPtrtglla~l~RdS~tI 269 (783)
T KOG1008|consen 200 GITVDPFSPNYFCSNSDGDIAIWDTYRN----IENPLQIILRNE-----NKKPK-QLFALAYCPTRTGLLAVLSRDSITI 269 (783)
T ss_pred cceecCCCCCceeccccCceeeccchhh----hccHHHHHhhCC-----CCccc-ceeeEEeccCCcchhhhhccCcceE
Confidence 666777 566787766774 8994211 111111000000 01112 5889999998777788888776666
Q ss_pred eecCCCCC
Q 000722 396 SEFDPRSL 403 (1331)
Q Consensus 396 ~VWDlr~~ 403 (1331)
+.+|++..
T Consensus 270 rlydi~~v 277 (783)
T KOG1008|consen 270 RLYDICVV 277 (783)
T ss_pred EEeccccc
Confidence 99998753
No 303
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=97.44 E-value=0.0012 Score=72.53 Aligned_cols=191 Identities=13% Similarity=0.003 Sum_probs=115.8
Q ss_pred EEEEEeeccee-EeeeecccCCCCCccccccccceeeehhhcccCCCcceEeecCCCceeeeeehhhheeehhhcCCCcc
Q 000722 135 FLVICCVNKAI-FLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKG 213 (1331)
Q Consensus 135 lLasgs~d~iI-vwDl~t~~~~~i~~~~~h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~~~v~~~~~gH~~ 213 (1331)
.|+.|+..+.. +|...+.+.. ...-..| .+.+..+.+- .-..-.+..++.|.++++.++..+..... -|..
T Consensus 86 ~la~gG~~g~fd~~~~~tn~~h-~~~cd~s---nn~v~~~~r~-cd~~~~~~i~sndht~k~~~~~~~s~~~~---~h~~ 157 (344)
T KOG4532|consen 86 TLADGGASGQFDLFACNTNDGH-LYQCDVS---NNDVTLVKRY-CDLKFPLNIASNDHTGKTMVVSGDSNKFA---VHNQ 157 (344)
T ss_pred EEEeccccceeeeecccCcccc-eeeeccc---ccchhhhhhh-cccccceeeccCCcceeEEEEecCcccce---eecc
Confidence 66777665555 7766654321 1111222 2222222110 00122466778899999988874332221 2333
Q ss_pred c--hhhhhHhhhccccEEEeecCCCceEEEEeccCCCccccccccceeeeccCcEEEEEechhccCCCcEEEeecCceeE
Q 000722 214 S--ISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLA 291 (1331)
Q Consensus 214 ~--V~~vawf~~spdg~lLaSgs~DgtIrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~Ir 291 (1331)
. ++++. +++++.++++.+....|-.|.+.....-. ........++.-.+..|+. ....++++..||++.
T Consensus 158 ~~~~ns~~---~snd~~~~~~Vgds~~Vf~y~id~~sey~---~~~~~a~t~D~gF~~S~s~---~~~~FAv~~Qdg~~~ 228 (344)
T KOG4532|consen 158 NLTQNSLH---YSNDPSWGSSVGDSRRVFRYAIDDESEYI---ENIYEAPTSDHGFYNSFSE---NDLQFAVVFQDGTCA 228 (344)
T ss_pred ccceeeeE---EcCCCceEEEecCCCcceEEEeCCcccee---eeeEecccCCCceeeeecc---CcceEEEEecCCcEE
Confidence 3 55555 79999999999999999999987643211 1112333445567889997 778999999999999
Q ss_pred eeeccchhhhcccCCCCcccccccccccCCCCCCCc--eeeeeec-c--eeeeeecC
Q 000722 292 IWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLD--ILTCVKD-S--HIWAIEHP 343 (1331)
Q Consensus 292 IWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg~--lLa~s~D-g--~IWdl~~~ 343 (1331)
|||++........+. ..-..|.+.+..+.|++.|. +|.-++. + +|-|+++.
T Consensus 229 I~DVR~~~tpm~~~s-strp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~ 284 (344)
T KOG4532|consen 229 IYDVRNMATPMAEIS-STRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNY 284 (344)
T ss_pred EEEecccccchhhhc-ccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccC
Confidence 999987543322211 12345889999999998765 4544332 2 36676654
No 304
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=97.41 E-value=0.0084 Score=79.72 Aligned_cols=268 Identities=13% Similarity=0.158 Sum_probs=141.5
Q ss_pred CCcEEEEEeecCCceeEeecCCCceeeeccccceEEeeeccCCc--cc--chhhh----------hhhhhhcc-------
Q 000722 11 NDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGV--DQ--RRLVG----------AKLEKLAE------- 69 (1331)
Q Consensus 11 s~~V~~lafSPdg~~LaSgs~DGtV~VWD~~tg~~i~s~~~~~~--~~--i~~vs----------pdg~~Las------- 69 (1331)
...|.|++||||+..|+..+.+++|.+-+ ++...+.+...+.. .. -..++ ..|+..+-
T Consensus 120 d~GI~a~~WSPD~Ella~vT~~~~l~~mt-~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~ 198 (928)
T PF04762_consen 120 DSGILAASWSPDEELLALVTGEGNLLLMT-RDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTV 198 (928)
T ss_pred cCcEEEEEECCCcCEEEEEeCCCEEEEEe-ccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCC
Confidence 35899999999999999999899888764 33444444332110 00 00011 11111000
Q ss_pred -----ccc-ccCCCCcccccC-CceeEEee----e--cchhhHHHHhhhccccccCCcccccccccccCCCCCCCCceEE
Q 000722 70 -----GEL-EHKGKPTEAMRG-GSVKQVNF----Y--DDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFL 136 (1331)
Q Consensus 70 -----gs~-d~~g~~l~~l~g-g~V~sVaf----~--DgtIrvWdl~tg~~l~~~~~~~~~~~~~~V~svafspdg~~lL 136 (1331)
+.. ..++++.....| |...+|.+ . -+.+|||+-+ |... .......+--.+++|.|.|+ ++
T Consensus 199 ~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~-----stSE~v~gLe~~l~WrPsG~-lI 271 (928)
T PF04762_consen 199 PKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQ-----STSEPVDGLEGALSWRPSGN-LI 271 (928)
T ss_pred CccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEE-----eccccCCCccCCccCCCCCC-EE
Confidence 000 111222223333 44444444 1 2568888854 3221 11112122334789999997 77
Q ss_pred EEEee----cceeEeeeecccCCCCC-ccccccccceeeehhhcccCCCcceEeecCCCceeeeeehhhhe--eehhhcC
Q 000722 137 VICCV----NKAIFLDLVTMRGRDIP-KQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWK--LVRRYTG 209 (1331)
Q Consensus 137 asgs~----d~iIvwDl~t~~~~~i~-~~~~h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~~--~v~~~~~ 209 (1331)
++... ..+++|.-+..+..... ........|..+.| ++++..|+....|. |.+|-..+.. +.+.+..
T Consensus 272 A~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~W-----n~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~ 345 (928)
T PF04762_consen 272 ASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAW-----NSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRF 345 (928)
T ss_pred EEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEE-----CCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEc
Confidence 77654 23335533322211110 11234568899999 78999999987665 9999887643 2222221
Q ss_pred CCccchhhhhHhhhccccEEEeecCCCceEEEEe----ccCCC----------------ccc-------cccc-c--cee
Q 000722 210 GHKGSISCLMTFMASSGEALLVSGGSDGLLILWS----ADHGQ----------------DSR-------ELVP-K--LSL 259 (1331)
Q Consensus 210 gH~~~V~~vawf~~spdg~lLaSgs~DgtIrVWD----l~tg~----------------~~~-------~~~~-~--~~l 259 (1331)
.....+..+.|. +.+...|...+.+|.+..++ +..+. .+. ...| . +.+
T Consensus 346 ~~~~~~~~~~Wd--pe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l 423 (928)
T PF04762_consen 346 SSSESVNFVKWD--PEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYEL 423 (928)
T ss_pred cCCCCCCceEEC--CCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEE
Confidence 233344446663 22334455555545554433 22211 000 0000 0 111
Q ss_pred eeccCcEEEEEechhccCCCcEEEeecCceeEeeeccch
Q 000722 260 KAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSF 298 (1331)
Q Consensus 260 ~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~ 298 (1331)
.-...|++++|++ +...+++-..||.|.+|.....
T Consensus 424 -~~~~~v~~vaf~~---~~~~~avl~~d~~l~~~~~~~~ 458 (928)
T PF04762_consen 424 -ELPSPVNDVAFSP---SNSRFAVLTSDGSLSIYEWDLK 458 (928)
T ss_pred -cCCCCcEEEEEeC---CCCeEEEEECCCCEEEEEecCC
Confidence 1346799999998 5666899999999999986543
No 305
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=97.29 E-value=0.0053 Score=68.65 Aligned_cols=224 Identities=18% Similarity=0.195 Sum_probs=118.9
Q ss_pred CCCCCCCceEEEEEeecceeEe----eeecccCCCCCccccccccceeeehhhcccCCCcceEeecCCCceeeeeehhhh
Q 000722 126 PPPSTKGRHFLVICCVNKAIFL----DLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISW 201 (1331)
Q Consensus 126 vafspdg~~lLasgs~d~iIvw----Dl~t~~~~~i~~~~~h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~ 201 (1331)
++.+.+|+ +|++--+..+-+= |+.+-..++ ...+.....-+.++| |||+.+|+.+...|+|++||+...
T Consensus 3 ~~~~~~Gk-~lAi~qd~~iEiRsa~Ddf~si~~kc-qVpkD~~PQWRkl~W-----SpD~tlLa~a~S~G~i~vfdl~g~ 75 (282)
T PF15492_consen 3 LALSSDGK-LLAILQDQCIEIRSAKDDFSSIIGKC-QVPKDPNPQWRKLAW-----SPDCTLLAYAESTGTIRVFDLMGS 75 (282)
T ss_pred eeecCCCc-EEEEEeccEEEEEeccCCchheeEEE-ecCCCCCchheEEEE-----CCCCcEEEEEcCCCeEEEEecccc
Confidence 34567887 6666554443321 222211111 122333445677999 889999999999999999998753
Q ss_pred eeehhhcCCC------ccchhhhhHhhhccc---cEEEeecCCCceEEEEeccCCC--ccccccccceeee-ccCcEEEE
Q 000722 202 KLVRRYTGGH------KGSISCLMTFMASSG---EALLVSGGSDGLLILWSADHGQ--DSRELVPKLSLKA-HDGGVVAV 269 (1331)
Q Consensus 202 ~~v~~~~~gH------~~~V~~vawf~~spd---g~lLaSgs~DgtIrVWDl~tg~--~~~~~~~~~~l~g-H~~~V~sv 269 (1331)
.+ ..+..++ ...|..+.+.....+ ...|+.-..+|.++-|-+..+. .-++ ...+.+.. +..+|+++
T Consensus 76 ~l-f~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e-~hsfsf~~~yp~Gi~~~ 153 (282)
T PF15492_consen 76 EL-FVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQE-NHSFSFSSHYPHGINSA 153 (282)
T ss_pred ee-EEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCccee-eEEEEecccCCCceeEE
Confidence 32 2332122 223333321101101 2245555778888877764332 1111 12233333 36789999
Q ss_pred EechhccCCCcEEEeecCce-----------eEeeeccchhhhcccCCCCcccccccccccCCCCCCCceeeeeecc---
Q 000722 270 ELSRVMGGSPQLITIGADKT-----------LAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDILTCVKDS--- 335 (1331)
Q Consensus 270 afsp~~~dg~~LaSgs~Dg~-----------IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg~lLa~s~Dg--- 335 (1331)
.|+| ..++|+.||.... +.-|.+-++ +|..+.++...|.
T Consensus 154 vy~p---~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~------------------------~Pyyk~v~~~~~~~~~ 206 (282)
T PF15492_consen 154 VYHP---KHRLLLVGGCEQNQDGMSKASSCGLTAWRILSD------------------------SPYYKQVTSSEDDITA 206 (282)
T ss_pred EEcC---CCCEEEEeccCCCCCccccccccCceEEEEcCC------------------------CCcEEEccccCccccc
Confidence 9999 5667776664221 222222221 2222222222221
Q ss_pred -----eeeeeecCccccccccccccccCCCccccccccceEEEEEEeccCCccEeeecceeEEEEeecCCCCC
Q 000722 336 -----HIWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPRSL 403 (1331)
Q Consensus 336 -----~IWdl~~~~~~~l~~~~~~~~~~~~~~~l~~h~~~~I~~la~sp~~~~lLAtGs~DG~Il~VWDlr~~ 403 (1331)
.+|.+-+. ......+.....|..|..|| ++.+||+.+-+|.+ .+|++...
T Consensus 207 ~~~~~~~~~~~~~----------------~~fs~~~~~~d~i~kmSlSP-dg~~La~ih~sG~l-sLW~iPsL 261 (282)
T PF15492_consen 207 SSKRRGLLRIPSF----------------KFFSRQGQEQDGIFKMSLSP-DGSLLACIHFSGSL-SLWEIPSL 261 (282)
T ss_pred cccccceeeccce----------------eeeeccccCCCceEEEEECC-CCCEEEEEEcCCeE-EEEecCcc
Confidence 12322110 00011122223799999999 68889999999998 79997654
No 306
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.24 E-value=0.0012 Score=80.03 Aligned_cols=137 Identities=15% Similarity=0.095 Sum_probs=84.2
Q ss_pred cceEeecCCCceeeeeehhhheeehhhcCCCccchhhhhHhhhccccEEEeecCCCceEEEEeccCCCccccccccceee
Q 000722 181 VPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLK 260 (1331)
Q Consensus 181 g~~LasGs~DGtIrlWDl~t~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrVWDl~tg~~~~~~~~~~~l~ 260 (1331)
+..++.++.+|.+..+|..+++.+-....+. ...+ ...+..++.++.||.+..+|..+++.++.... +.
T Consensus 256 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~---~~~~-----~~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~---~~ 324 (394)
T PRK11138 256 GGVVYALAYNGNLVALDLRSGQIVWKREYGS---VNDF-----AVDGGRIYLVDQNDRVYALDTRGGVELWSQSD---LL 324 (394)
T ss_pred CCEEEEEEcCCeEEEEECCCCCEEEeecCCC---ccCc-----EEECCEEEEEcCCCeEEEEECCCCcEEEcccc---cC
Confidence 4567777789999999999987765432111 1111 12455666778899999999999876543110 11
Q ss_pred eccCcEEEEEechhccCCCcEEEeecCceeEeeeccchhhhcccCCCCcccccccccccCCCCCCCceeeeeecceeeee
Q 000722 261 AHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDILTCVKDSHIWAI 340 (1331)
Q Consensus 261 gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg~lLa~s~Dg~IWdl 340 (1331)
+ ....+..+. +.+|+.++.||.|.+.|..+|+.+.+.+. ....+.+-..-.+++++.++.||+|+-+
T Consensus 325 -~-~~~~sp~v~-----~g~l~v~~~~G~l~~ld~~tG~~~~~~~~------~~~~~~s~P~~~~~~l~v~t~~G~l~~~ 391 (394)
T PRK11138 325 -H-RLLTAPVLY-----NGYLVVGDSEGYLHWINREDGRFVAQQKV------DSSGFLSEPVVADDKLLIQARDGTVYAI 391 (394)
T ss_pred -C-CcccCCEEE-----CCEEEEEeCCCEEEEEECCCCCEEEEEEc------CCCcceeCCEEECCEEEEEeCCceEEEE
Confidence 1 111222222 35778889999999999999987655321 1111222111235667788888887765
Q ss_pred e
Q 000722 341 E 341 (1331)
Q Consensus 341 ~ 341 (1331)
+
T Consensus 392 ~ 392 (394)
T PRK11138 392 T 392 (394)
T ss_pred e
Confidence 4
No 307
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.11 E-value=0.0019 Score=75.25 Aligned_cols=175 Identities=14% Similarity=0.036 Sum_probs=111.6
Q ss_pred ccCCCCCCCCceEEEEEee-ccee-EeeeecccCCCCCccccccccceeeehhhcccCCCcceEeecCCCceeeeeehhh
Q 000722 123 FASPPPSTKGRHFLVICCV-NKAI-FLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMIS 200 (1331)
Q Consensus 123 V~svafspdg~~lLasgs~-d~iI-vwDl~t~~~~~i~~~~~h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t 200 (1331)
|.+++.+-++- ++.+.++ |+.+ ++|+..-.......+..-.+.+.++.- | ..+-...-++.-.+|.|.++|-..
T Consensus 56 I~sl~~S~dg~-L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv~s-k--Gd~~s~IAVs~~~sg~i~VvD~~~ 131 (558)
T KOG0882|consen 56 ILSLAVSYDGW-LFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWVTS-K--GDKISLIAVSLFKSGKIFVVDGFG 131 (558)
T ss_pred HHhhhccccce-eEeeccCcccceeEEEeeccchhhhcccccCCCceEEecC-C--CCeeeeEEeecccCCCcEEECCcC
Confidence 44566677775 6777666 7766 557765432211112222222222211 1 011112333444789999999875
Q ss_pred he-eehhhcCCCccchhhhhHhhhccccEEEeecCCCceEEEEeccC------CCcccccc---ccceeeeccCcEEEEE
Q 000722 201 WK-LVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADH------GQDSRELV---PKLSLKAHDGGVVAVE 270 (1331)
Q Consensus 201 ~~-~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrVWDl~t------g~~~~~~~---~~~~l~gH~~~V~sva 270 (1331)
.- ....+..-|..+|.++. +.+-++.++|....|.|.-|.... ......+. -.+.+.-......++.
T Consensus 132 d~~q~~~fkklH~sPV~~i~---y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~E 208 (558)
T KOG0882|consen 132 DFCQDGYFKKLHFSPVKKIR---YNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFE 208 (558)
T ss_pred CcCccceecccccCceEEEE---eeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceE
Confidence 44 33444556999999997 788899999999999999998873 11111111 1122233445678999
Q ss_pred echhccCCCcEEEeecCceeEeeeccchhhhcccCCC
Q 000722 271 LSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPV 307 (1331)
Q Consensus 271 fsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~ 307 (1331)
|+| ++..+.+-+.|..|++++..+|+.++.+...
T Consensus 209 fsp---~g~qistl~~DrkVR~F~~KtGklvqeiDE~ 242 (558)
T KOG0882|consen 209 FSP---DGAQISTLNPDRKVRGFVFKTGKLVQEIDEV 242 (558)
T ss_pred Ecc---ccCcccccCcccEEEEEEeccchhhhhhhcc
Confidence 999 8999999999999999999999998886544
No 308
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.07 E-value=0.0056 Score=69.11 Aligned_cols=175 Identities=13% Similarity=0.011 Sum_probs=101.6
Q ss_pred CCCceEEEEEeecceeEeeeecccCCCCCccc--c-ccccceeeehhhcccCCCcceEeecCCC--------ceeeeeeh
Q 000722 130 TKGRHFLVICCVNKAIFLDLVTMRGRDIPKQE--L-DNKSLVCMEFLSRSAVGDVPLVAFGSSD--------GVIRVLSM 198 (1331)
Q Consensus 130 pdg~~lLasgs~d~iIvwDl~t~~~~~i~~~~--~-h~~~V~~Vaf~P~s~Spdg~~LasGs~D--------GtIrlWDl 198 (1331)
+++. + +++..++..++|..+++...+.... . ....++.+++ .++|++.++.... |.|..++.
T Consensus 50 ~~g~-l-~v~~~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~v-----d~~G~ly~t~~~~~~~~~~~~g~v~~~~~ 122 (246)
T PF08450_consen 50 PDGR-L-YVADSGGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAV-----DPDGNLYVTDSGGGGASGIDPGSVYRIDP 122 (246)
T ss_dssp TTSE-E-EEEETTCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE------TTS-EEEEEECCBCTTCGGSEEEEEEET
T ss_pred cCCE-E-EEEEcCceEEEecCCCcEEEEeeccCCCcccCCCceEEE-----cCCCCEEEEecCCCccccccccceEEECC
Confidence 4553 4 4445566666687776543332221 1 3457788999 7789876665433 55666776
Q ss_pred hhheeehhhcCCCccchhhhhHhhhccccEEE-eecCCCceEEEEeccCCCc-cccccccceeeeccCcEEEEEechhcc
Q 000722 199 ISWKLVRRYTGGHKGSISCLMTFMASSGEALL-VSGGSDGLLILWSADHGQD-SRELVPKLSLKAHDGGVVAVELSRVMG 276 (1331)
Q Consensus 199 ~t~~~v~~~~~gH~~~V~~vawf~~spdg~lL-aSgs~DgtIrVWDl~tg~~-~~~~~~~~~l~gH~~~V~svafsp~~~ 276 (1331)
. ++..... ..-...+.++ ++++++.| ++-+..+.|..+++..... +........+....+..-.+++..
T Consensus 123 ~-~~~~~~~--~~~~~pNGi~---~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~--- 193 (246)
T PF08450_consen 123 D-GKVTVVA--DGLGFPNGIA---FSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDS--- 193 (246)
T ss_dssp T-SEEEEEE--EEESSEEEEE---EETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBT---
T ss_pred C-CeEEEEe--cCcccccceE---ECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcC---
Confidence 6 4433322 2334456676 78888755 5778889999999874332 211111111222223477899998
Q ss_pred CCCcEEEeecCceeEeeeccchhhhcccCCCCcccccccccccCCC-CCCCc
Q 000722 277 GSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPR-APNLD 327 (1331)
Q Consensus 277 dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svaf-spdg~ 327 (1331)
++++.++....+.|.++|.+ |+.+..+. .....+++++| .++..
T Consensus 194 ~G~l~va~~~~~~I~~~~p~-G~~~~~i~------~p~~~~t~~~fgg~~~~ 238 (246)
T PF08450_consen 194 DGNLWVADWGGGRIVVFDPD-GKLLREIE------LPVPRPTNCAFGGPDGK 238 (246)
T ss_dssp TS-EEEEEETTTEEEEEETT-SCEEEEEE-------SSSSEEEEEEESTTSS
T ss_pred CCCEEEEEcCCCEEEEECCC-ccEEEEEc------CCCCCEEEEEEECCCCC
Confidence 78888887789999999977 77665532 11224566777 34433
No 309
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=96.95 E-value=0.018 Score=64.62 Aligned_cols=40 Identities=23% Similarity=0.407 Sum_probs=35.0
Q ss_pred ccCcEEEEEechhccCCCcEEEeecCceeEeeeccchhhhccc
Q 000722 262 HDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRI 304 (1331)
Q Consensus 262 H~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~ 304 (1331)
....|..|..+| ++..|++...+|.|.+|++-+.+..+.+
T Consensus 228 ~~d~i~kmSlSP---dg~~La~ih~sG~lsLW~iPsL~~~~~W 267 (282)
T PF15492_consen 228 EQDGIFKMSLSP---DGSLLACIHFSGSLSLWEIPSLRLQRSW 267 (282)
T ss_pred CCCceEEEEECC---CCCEEEEEEcCCeEEEEecCcchhhccc
Confidence 356799999999 9999999999999999999887766654
No 310
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.94 E-value=0.0062 Score=75.74 Aligned_cols=187 Identities=17% Similarity=0.176 Sum_probs=119.6
Q ss_pred ccccCCCCCCCCceEEEEEeeccee-EeeeecccCCCCCccccccccceeeehhhcccCCCcceEeecCCCceeeeeehh
Q 000722 121 SGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMI 199 (1331)
Q Consensus 121 ~~V~svafspdg~~lLasgs~d~iI-vwDl~t~~~~~i~~~~~h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~ 199 (1331)
+.+++++++. + +|+-|..++.+ ..+.+. .. .+...|... ..+|.++++||.||+|.|..+-
T Consensus 40 D~is~~av~~--~-~~~~GtH~g~v~~~~~~~-~~---~~~~~~s~~-----------~~~Gey~asCS~DGkv~I~sl~ 101 (846)
T KOG2066|consen 40 DAISCCAVHD--K-FFALGTHRGAVYLTTCQG-NP---KTNFDHSSS-----------ILEGEYVASCSDDGKVVIGSLF 101 (846)
T ss_pred hHHHHHHhhc--c-eeeeccccceEEEEecCC-cc---ccccccccc-----------ccCCceEEEecCCCcEEEeecc
Confidence 3455565643 3 78888888776 344332 11 112222221 2479999999999999999888
Q ss_pred hheeehhhcCCCccchhhhhHhhhccc-----cEEEeecCCCceEEEEeccCCCccccccccceeeeccCcEEEEEechh
Q 000722 200 SWKLVRRYTGGHKGSISCLMTFMASSG-----EALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRV 274 (1331)
Q Consensus 200 t~~~v~~~~~gH~~~V~~vawf~~spd-----g~lLaSgs~DgtIrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~ 274 (1331)
+.+....+ ....++.+++ ++|+ .+.+++|+.-| +.++.-+- .....+. .+..-.+.|.++.|.
T Consensus 102 ~~~~~~~~--df~rpiksia---l~Pd~~~~~sk~fv~GG~ag-lvL~er~w---lgnk~~v-~l~~~eG~I~~i~W~-- 169 (846)
T KOG2066|consen 102 TDDEITQY--DFKRPIKSIA---LHPDFSRQQSKQFVSGGMAG-LVLSERNW---LGNKDSV-VLSEGEGPIHSIKWR-- 169 (846)
T ss_pred CCccceeE--ecCCcceeEE---eccchhhhhhhheeecCcce-EEEehhhh---hcCccce-eeecCccceEEEEec--
Confidence 77666554 2456777776 5665 56899999998 76664321 1111111 355667889999996
Q ss_pred ccCCCcEEEeecCceeEeeeccchhhhcccCCCCcccccccccccCCCCCCCceeeeeecc-eeeeee
Q 000722 275 MGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDILTCVKDS-HIWAIE 341 (1331)
Q Consensus 275 ~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg~lLa~s~Dg-~IWdl~ 341 (1331)
|.+|+-++++| |++||..+++.+..+.+..........-..+.|.++.+++.|-.|. +|..++
T Consensus 170 ---g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVIGW~d~v~i~~I~ 233 (846)
T KOG2066|consen 170 ---GNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVIGWGDSVKICSIK 233 (846)
T ss_pred ---CcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEEecCCeEEEEEEe
Confidence 56888887776 6999999988777665544222222334467788888777775554 355555
No 311
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=96.94 E-value=0.011 Score=67.74 Aligned_cols=242 Identities=15% Similarity=0.116 Sum_probs=138.1
Q ss_pred CcEEEEEeecCC-ceeEeecCCC-ceeeeccccceEEeeeccCCcccchhhhhhhhhhcccccccCCCCcccccCCceeE
Q 000722 12 DKIVKIQLHPTH-PWLVTADASD-HVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRGGSVKQ 89 (1331)
Q Consensus 12 ~~V~~lafSPdg-~~LaSgs~DG-tV~VWD~~tg~~i~s~~~~~~~~i~~vspdg~~Lasgs~d~~g~~l~~l~gg~V~s 89 (1331)
.+...++.+|+. ..++.+-.-| ...+||..+|+.+..+.... +
T Consensus 5 ~RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~----------g------------------------- 49 (305)
T PF07433_consen 5 ARGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPP----------G------------------------- 49 (305)
T ss_pred ccccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCC----------C-------------------------
Confidence 355678999954 4666676666 57889999998888776321 0
Q ss_pred EeeecchhhHHHHhhhccccccCCcccccccccccCCCCCCCCceEEEEEee-----ccee-EeeeecccCCCCCccccc
Q 000722 90 VNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCV-----NKAI-FLDLVTMRGRDIPKQELD 163 (1331)
Q Consensus 90 Vaf~DgtIrvWdl~tg~~l~~~~~~~~~~~~~~V~svafspdg~~lLasgs~-----d~iI-vwDl~t~~~~~i~~~~~h 163 (1331)
..+.+| -.|++||+ +|.+.-. .++| +||... ..+.+..+..+
T Consensus 50 -----------------------RHFyGH-------g~fs~dG~-~LytTEnd~~~g~G~IgVyd~~~-~~~ri~E~~s~ 97 (305)
T PF07433_consen 50 -----------------------RHFYGH-------GVFSPDGR-LLYTTENDYETGRGVIGVYDAAR-GYRRIGEFPSH 97 (305)
T ss_pred -----------------------CEEecC-------EEEcCCCC-EEEEeccccCCCcEEEEEEECcC-CcEEEeEecCC
Confidence 122333 45899998 5555432 3455 888872 23344455566
Q ss_pred cccceeeehhhcccCCCcceEeecCC------------------Cceeeeeehhhheeehhhc---CCCccchhhhhHhh
Q 000722 164 NKSLVCMEFLSRSAVGDVPLVAFGSS------------------DGVIRVLSMISWKLVRRYT---GGHKGSISCLMTFM 222 (1331)
Q Consensus 164 ~~~V~~Vaf~P~s~Spdg~~LasGs~------------------DGtIrlWDl~t~~~v~~~~---~gH~~~V~~vawf~ 222 (1331)
.-....+.+ .|||+.|+++.- +-++...|..+|+.+.... .-|..++..++
T Consensus 98 GIGPHel~l-----~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa--- 169 (305)
T PF07433_consen 98 GIGPHELLL-----MPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLA--- 169 (305)
T ss_pred CcChhhEEE-----cCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEE---
Confidence 666677778 578877776531 2234445556666554421 13555666665
Q ss_pred hccccEEEeecCCCce-------EEEEeccCCCccccc-cccceeeeccCcEEEEEechhccCCCcE-EEeecCceeEee
Q 000722 223 ASSGEALLVSGGSDGL-------LILWSADHGQDSREL-VPKLSLKAHDGGVVAVELSRVMGGSPQL-ITIGADKTLAIW 293 (1331)
Q Consensus 223 ~spdg~lLaSgs~Dgt-------IrVWDl~tg~~~~~~-~~~~~l~gH~~~V~svafsp~~~dg~~L-aSgs~Dg~IrIW 293 (1331)
...+|..++..-..|. |-+++.. .....+ .+......-.+.+-+|++++ ++.++ +|+-.-+.+.+|
T Consensus 170 ~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g--~~~~~~~~p~~~~~~l~~Y~gSIa~~~---~g~~ia~tsPrGg~~~~~ 244 (305)
T PF07433_consen 170 VDGDGTVAFAMQYQGDPGDAPPLVALHRRG--GALRLLPAPEEQWRRLNGYIGSIAADR---DGRLIAVTSPRGGRVAVW 244 (305)
T ss_pred ecCCCcEEEEEecCCCCCccCCeEEEEcCC--CcceeccCChHHHHhhCCceEEEEEeC---CCCEEEEECCCCCEEEEE
Confidence 4555544333222111 2222221 111100 00111223346688999998 66666 555578899999
Q ss_pred eccchhhhcccCCCCcccccccccccCCCCCCCceeeeeecceeeeeec
Q 000722 294 DTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDILTCVKDSHIWAIEH 342 (1331)
Q Consensus 294 Dl~t~~~l~~~~~~~~l~~H~~~V~svafspdg~lLa~s~Dg~IWdl~~ 342 (1331)
|..+++.+.... -..++.++-.+++ ++.++..|.++.+..
T Consensus 245 d~~tg~~~~~~~--------l~D~cGva~~~~~-f~~ssG~G~~~~~~~ 284 (305)
T PF07433_consen 245 DAATGRLLGSVP--------LPDACGVAPTDDG-FLVSSGQGQLIRLSP 284 (305)
T ss_pred ECCCCCEeeccc--------cCceeeeeecCCc-eEEeCCCccEEEccC
Confidence 999998765521 1234455555666 666666677766654
No 312
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=96.86 E-value=0.055 Score=70.42 Aligned_cols=116 Identities=16% Similarity=0.176 Sum_probs=72.2
Q ss_pred eeeehhhcccCCCcceEee-----cCCCceeeeeehhhheeehhhcCCCccchhhhhHhhhccccEEEeec---CCCceE
Q 000722 168 VCMEFLSRSAVGDVPLVAF-----GSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSG---GSDGLL 239 (1331)
Q Consensus 168 ~~Vaf~P~s~Spdg~~Las-----Gs~DGtIrlWDl~t~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSg---s~DgtI 239 (1331)
+.|.| -.||.++++ ...-..|++||-+ |.+-..-. ...+--.+++| -|.|.++++- ..|+.|
T Consensus 199 ~~IsW-----RgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se-~~~~l~~~LsW---kPsgs~iA~iq~~~sd~~I 268 (1265)
T KOG1920|consen 199 TSISW-----RGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSE-PVEGLQHSLSW---KPSGSLIAAIQCKTSDSDI 268 (1265)
T ss_pred ceEEE-----ccCCcEEEEEEEeccCCceeEEEeccc-chhhcccC-cccccccceee---cCCCCeEeeeeecCCCCcE
Confidence 34777 678999988 3344899999977 43322221 23333445665 5678888764 346678
Q ss_pred EEEeccCCCccccccccceeeeccCcEEEEEechhccCCCcEEE---eecCceeEeeeccchh
Q 000722 240 ILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLIT---IGADKTLAIWDTVSFK 299 (1331)
Q Consensus 240 rVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaS---gs~Dg~IrIWDl~t~~ 299 (1331)
.++.-+.- ...++... +......|..++|+. ++..|++ ......|++|-+.+..
T Consensus 269 vffErNGL-~hg~f~l~--~p~de~~ve~L~Wns---~sdiLAv~~~~~e~~~v~lwt~~Nyh 325 (1265)
T KOG1920|consen 269 VFFERNGL-RHGEFVLP--FPLDEKEVEELAWNS---NSDILAVVTSNLENSLVQLWTTGNYH 325 (1265)
T ss_pred EEEecCCc-cccccccC--CcccccchheeeecC---CCCceeeeecccccceEEEEEecCeE
Confidence 88876532 22222111 122233489999998 7888887 5556669999877643
No 313
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.85 E-value=0.0072 Score=75.20 Aligned_cols=184 Identities=13% Similarity=0.077 Sum_probs=105.0
Q ss_pred CcEEEEEeecCCceeEeecCCCceeeeccccceEEeeeccCCcccchhhhhhhhhhcccccccCCCCcccccCCceeEEe
Q 000722 12 DKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRGGSVKQVN 91 (1331)
Q Consensus 12 ~~V~~lafSPdg~~LaSgs~DGtV~VWD~~tg~~i~s~~~~~~~~i~~vspdg~~Lasgs~d~~g~~l~~l~gg~V~sVa 91 (1331)
+.+.|+++| +++|+-|.++|.|++.+... .. .+...+. ....+|.++++++.
T Consensus 40 D~is~~av~--~~~~~~GtH~g~v~~~~~~~-~~-~~~~~~s-----~~~~~Gey~asCS~------------------- 91 (846)
T KOG2066|consen 40 DAISCCAVH--DKFFALGTHRGAVYLTTCQG-NP-KTNFDHS-----SSILEGEYVASCSD------------------- 91 (846)
T ss_pred hHHHHHHhh--cceeeeccccceEEEEecCC-cc-ccccccc-----ccccCCceEEEecC-------------------
Confidence 556777777 57888888999888888653 22 1111111 00345666766653
Q ss_pred eecchhhHHHHhhhccccccCCcccccccccccCCCCCCC----CceEEEEEeecceeEeeeecccCCCCCccccccccc
Q 000722 92 FYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTK----GRHFLVICCVNKAIFLDLVTMRGRDIPKQELDNKSL 167 (1331)
Q Consensus 92 f~DgtIrvWdl~tg~~l~~~~~~~~~~~~~~V~svafspd----g~~lLasgs~d~iIvwDl~t~~~~~i~~~~~h~~~V 167 (1331)
||.|.|-.+.+.+.. .......++.+++++|+ ....+++|+..++++..-+-...+....+....+.|
T Consensus 92 --DGkv~I~sl~~~~~~------~~~df~rpiksial~Pd~~~~~sk~fv~GG~aglvL~er~wlgnk~~v~l~~~eG~I 163 (846)
T KOG2066|consen 92 --DGKVVIGSLFTDDEI------TQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAGLVLSERNWLGNKDSVVLSEGEGPI 163 (846)
T ss_pred --CCcEEEeeccCCccc------eeEecCCcceeEEeccchhhhhhhheeecCcceEEEehhhhhcCccceeeecCccce
Confidence 333333322222211 11122456778888887 123677777777554411111111111234447899
Q ss_pred eeeehhhcccCCCcceEeecCCCceeeeeehhhheeehhhcCCCccchh------hhhHhhhccccEEEeecCCCceEEE
Q 000722 168 VCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSIS------CLMTFMASSGEALLVSGGSDGLLIL 241 (1331)
Q Consensus 168 ~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~~~v~~~~~gH~~~V~------~vawf~~spdg~lLaSgs~DgtIrV 241 (1331)
.++.| .|++|+-++++| |++||..+++.+..+...| ..+. .+.| .+ ...|+. |...+|+|
T Consensus 164 ~~i~W-------~g~lIAWand~G-v~vyd~~~~~~l~~i~~p~-~~~R~e~fpphl~W---~~-~~~LVI-GW~d~v~i 229 (846)
T KOG2066|consen 164 HSIKW-------RGNLIAWANDDG-VKVYDTPTRQRLTNIPPPS-QSVRPELFPPHLHW---QD-EDRLVI-GWGDSVKI 229 (846)
T ss_pred EEEEe-------cCcEEEEecCCC-cEEEeccccceeeccCCCC-CCCCcccCCCceEe---cC-CCeEEE-ecCCeEEE
Confidence 99999 699999998888 9999999888777665444 2222 2222 23 334444 34457777
Q ss_pred Eecc
Q 000722 242 WSAD 245 (1331)
Q Consensus 242 WDl~ 245 (1331)
..++
T Consensus 230 ~~I~ 233 (846)
T KOG2066|consen 230 CSIK 233 (846)
T ss_pred EEEe
Confidence 7776
No 314
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.77 E-value=0.033 Score=64.65 Aligned_cols=94 Identities=11% Similarity=-0.001 Sum_probs=73.6
Q ss_pred eeeeehhhheeehhhcCCCccchhhhhHhhhccccE-EEeecCCCceEEEEeccCCCccccccccceeeeccCcEEEEEe
Q 000722 193 IRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEA-LLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVEL 271 (1331)
Q Consensus 193 IrlWDl~t~~~v~~~~~gH~~~V~~vawf~~spdg~-lLaSgs~DgtIrVWDl~tg~~~~~~~~~~~l~gH~~~V~svaf 271 (1331)
|++.+.-+.+... +..+|...|..++ |+|..+ ++..++.+.+|+|.|+++...+.. +..| ..+++++|
T Consensus 175 v~~l~~~~fkssq-~lp~~g~~Irdla---fSp~~~GLl~~asl~nkiki~dlet~~~vss------y~a~-~~~wSC~w 243 (463)
T KOG1645|consen 175 VQKLESHDFKSSQ-ILPGEGSFIRDLA---FSPFNEGLLGLASLGNKIKIMDLETSCVVSS------YIAY-NQIWSCCW 243 (463)
T ss_pred eEEeccCCcchhh-cccccchhhhhhc---cCccccceeeeeccCceEEEEecccceeeeh------eecc-CCceeeee
Confidence 5555555555555 3448899999997 787766 788999999999999998765543 3455 77999999
Q ss_pred chhccCCCcEEEeecCceeEeeeccchh
Q 000722 272 SRVMGGSPQLITIGADKTLAIWDTVSFK 299 (1331)
Q Consensus 272 sp~~~dg~~LaSgs~Dg~IrIWDl~t~~ 299 (1331)
+. ++..+|..|-..|.|.|||++..+
T Consensus 244 Dl--de~h~IYaGl~nG~VlvyD~R~~~ 269 (463)
T KOG1645|consen 244 DL--DERHVIYAGLQNGMVLVYDMRQPE 269 (463)
T ss_pred cc--CCcceeEEeccCceEEEEEccCCC
Confidence 98 477888999999999999998643
No 315
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=96.70 E-value=0.02 Score=69.38 Aligned_cols=138 Identities=12% Similarity=0.040 Sum_probs=78.1
Q ss_pred ceEeecCCCceeeeeehhhheeehhhcCCCc---cc---hhhhhHhhhcc--ccEEEeecCCCceEEEEeccCCCccccc
Q 000722 182 PLVAFGSSDGVIRVLSMISWKLVRRYTGGHK---GS---ISCLMTFMASS--GEALLVSGGSDGLLILWSADHGQDSREL 253 (1331)
Q Consensus 182 ~~LasGs~DGtIrlWDl~t~~~v~~~~~gH~---~~---V~~vawf~~sp--dg~lLaSgs~DgtIrVWDl~tg~~~~~~ 253 (1331)
..++.++.+|.+..+|..+++.+........ .. ...+. .+| .+..++.++.+|.+..+|..+|+.+++.
T Consensus 206 ~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~---~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~ 282 (394)
T PRK11138 206 GGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVD---TTPVVVGGVVYALAYNGNLVALDLRSGQIVWKR 282 (394)
T ss_pred CEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccC---CCcEEECCEEEEEEcCCeEEEEECCCCCEEEee
Confidence 3567778899999999998876654321110 00 01110 111 2345666678999999999999866541
Q ss_pred cccceeeeccCcEEEEEechhccCCCcEEEeecCceeEeeeccchhhhcccCCCCcccccccccccCCCCCCCceeeeee
Q 000722 254 VPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDILTCVK 333 (1331)
Q Consensus 254 ~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg~lLa~s~ 333 (1331)
. +. ....+.. .+..++.++.||.+..+|..+|+.+.+.... . +. ...+... -++.++.++.
T Consensus 283 ~----~~----~~~~~~~-----~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~---~-~~-~~~sp~v-~~g~l~v~~~ 343 (394)
T PRK11138 283 E----YG----SVNDFAV-----DGGRIYLVDQNDRVYALDTRGGVELWSQSDL---L-HR-LLTAPVL-YNGYLVVGDS 343 (394)
T ss_pred c----CC----CccCcEE-----ECCEEEEEcCCCeEEEEECCCCcEEEccccc---C-CC-cccCCEE-ECCEEEEEeC
Confidence 1 11 1112222 3457777888999999999988765432111 0 00 0111111 2566677778
Q ss_pred cceeeeee
Q 000722 334 DSHIWAIE 341 (1331)
Q Consensus 334 Dg~IWdl~ 341 (1331)
||.|+-++
T Consensus 344 ~G~l~~ld 351 (394)
T PRK11138 344 EGYLHWIN 351 (394)
T ss_pred CCEEEEEE
Confidence 88765443
No 316
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.67 E-value=0.0003 Score=85.69 Aligned_cols=97 Identities=18% Similarity=0.108 Sum_probs=55.4
Q ss_pred hhccccccchHHHHHHHHHHHhcccccccccccccccchhhhcccccchhhhhhhHHHHhhccChhhhhhhhhcCchHHH
Q 000722 1025 IDAADATGQANIAREALKRLAAAGSVKGALQGHELRGLALRLANHGELTRLSGLVTNLISLGLGREAAFSAAILGDNALM 1104 (1331)
Q Consensus 1025 ~~~al~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~ll~~~~g~~~~l~~l~~~~~~~~~~~~~af~~~~lgd~~~~ 1104 (1331)
-+.|+..|++++|.++.+.+.+- +-+..|.-.++..||.+-.++- ..+.++.....|.....||.+..
T Consensus 325 FeLAl~lg~L~~A~~~a~~~~~~---------~~W~~Lg~~AL~~g~~~lAe~c---~~k~~d~~~L~lLy~~~g~~~~L 392 (443)
T PF04053_consen 325 FELALQLGNLDIALEIAKELDDP---------EKWKQLGDEALRQGNIELAEEC---YQKAKDFSGLLLLYSSTGDREKL 392 (443)
T ss_dssp HHHHHHCT-HHHHHHHCCCCSTH---------HHHHHHHHHHHHTTBHHHHHHH---HHHCT-HHHHHHHHHHCT-HHHH
T ss_pred hHHHHhcCCHHHHHHHHHhcCcH---------HHHHHHHHHHHHcCCHHHHHHH---HHhhcCccccHHHHHHhCCHHHH
Confidence 37899999999999988766211 2566677777777777655555 44445552333444477777766
Q ss_pred HHHhhh---hhhHHHHHHhhhccCCCcHHHHHHH
Q 000722 1105 EKAWQD---TGMLAEAVLHAHAHGRPSLKNLVEA 1135 (1331)
Q Consensus 1105 ~~~l~~---~~~~~~A~~~A~~~~~~~~~~~~~~ 1135 (1331)
.++... .|++..|...|--=| .+.++++.
T Consensus 393 ~kl~~~a~~~~~~n~af~~~~~lg--d~~~cv~l 424 (443)
T PF04053_consen 393 SKLAKIAEERGDINIAFQAALLLG--DVEECVDL 424 (443)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHT---HHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHcC--CHHHHHHH
Confidence 665443 346666555544333 34455443
No 317
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.66 E-value=0.0038 Score=72.07 Aligned_cols=49 Identities=14% Similarity=0.161 Sum_probs=42.8
Q ss_pred cccccCCCcEEEEEeecCCc-eeEeecCCCceeeeccccceEEeeeccCC
Q 000722 5 KAFRPTNDKIVKIQLHPTHP-WLVTADASDHVSVWNWEHRQVIYELKAGG 53 (1331)
Q Consensus 5 ~~L~gHs~~V~~lafSPdg~-~LaSgs~DGtV~VWD~~tg~~i~s~~~~~ 53 (1331)
..+.+|...|..++|||... ++..++.+..|+|.|+++..++..+..+.
T Consensus 187 q~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~ 236 (463)
T KOG1645|consen 187 QILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYN 236 (463)
T ss_pred hcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccC
Confidence 35678899999999999988 78889999999999999998888887553
No 318
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.59 E-value=0.0061 Score=71.21 Aligned_cols=223 Identities=12% Similarity=0.010 Sum_probs=139.6
Q ss_pred cccccceeeehhhcccCCCcceEeecCCCceeeeeehhh---heeehhhcCCCccchhhhhHhhhccccEEEeecCC-Cc
Q 000722 162 LDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMIS---WKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGS-DG 237 (1331)
Q Consensus 162 ~h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t---~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~-Dg 237 (1331)
.|++.|+.+.. ...+++++++.||.++.|.-.. -+.++.+. .|...|.+++ .+-++.++.|.+. |.
T Consensus 7 mhrd~i~hv~~------tka~fiiqASlDGh~KFWkKs~isGvEfVKhFr-aHL~~I~sl~---~S~dg~L~~Sv~d~Dh 76 (558)
T KOG0882|consen 7 MHRDVITHVFP------TKAKFIIQASLDGHKKFWKKSRISGVEFVKHFR-AHLGVILSLA---VSYDGWLFRSVEDPDH 76 (558)
T ss_pred cccceeeeEee------ehhheEEeeecchhhhhcCCCCccceeehhhhH-HHHHHHHhhh---ccccceeEeeccCccc
Confidence 46777777655 2467999999999999997643 24556666 7888888887 7899999999888 99
Q ss_pred eEEEEeccCCCccccccccceeeeccCcEEEEEechhccCCC-cEE-EeecCceeEeeeccchhhhcccCCCCccccccc
Q 000722 238 LLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSP-QLI-TIGADKTLAIWDTVSFKELRRIKPVPKLACHSV 315 (1331)
Q Consensus 238 tIrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~-~La-Sgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~ 315 (1331)
.++++|+.+-..+.-+ ...-+.+ .+. ...++ ++.. .|+ +.-.++.+.++|-....|-. ...-.-|..
T Consensus 77 s~KvfDvEn~Dminmi-KL~~lPg---~a~-wv~sk--Gd~~s~IAVs~~~sg~i~VvD~~~d~~q~----~~fkklH~s 145 (558)
T KOG0882|consen 77 SVKVFDVENFDMINMI-KLVDLPG---FAE-WVTSK--GDKISLIAVSLFKSGKIFVVDGFGDFCQD----GYFKKLHFS 145 (558)
T ss_pred ceeEEEeeccchhhhc-ccccCCC---ceE-EecCC--CCeeeeEEeecccCCCcEEECCcCCcCcc----ceecccccC
Confidence 9999999876543211 1111121 121 22233 1222 222 33358899999976544311 112356888
Q ss_pred ccccCCCCCCCceee-eeeccee--eeeecCccccc-cccccccccCCCccccccccceEEEEEEeccCCccEeeeccee
Q 000722 316 ASWCHPRAPNLDILT-CVKDSHI--WAIEHPTYSAL-TRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNV 391 (1331)
Q Consensus 316 ~V~svafspdg~lLa-~s~Dg~I--Wdl~~~~~~~l-~~~~~~~~~~~~~~~l~~h~~~~I~~la~sp~~~~lLAtGs~D 391 (1331)
+|.++.+.+-+..+. .-..|.| |.... .+... ....+.++....+..+..... ...++.|+| .+..+.+-+.|
T Consensus 146 PV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~-~~qfPr~~l~~~~K~eTdLy~f~K~Kt-~pts~Efsp-~g~qistl~~D 222 (558)
T KOG0882|consen 146 PVKKIRYNQAGDSAVSIDISGMVEYWSAEG-PFQFPRTNLNFELKHETDLYGFPKAKT-EPTSFEFSP-DGAQISTLNPD 222 (558)
T ss_pred ceEEEEeeccccceeeccccceeEeecCCC-cccCccccccccccccchhhccccccc-CccceEEcc-ccCcccccCcc
Confidence 888888888777553 3334443 76653 12111 112333333333334444444 678999999 47778888899
Q ss_pred EEEEeecCCCCCCCCCCC
Q 000722 392 GVIISEFDPRSLPAVAPL 409 (1331)
Q Consensus 392 G~Il~VWDlr~~p~i~~~ 409 (1331)
..| ++++.+....+..+
T Consensus 223 rkV-R~F~~KtGklvqei 239 (558)
T KOG0882|consen 223 RKV-RGFVFKTGKLVQEI 239 (558)
T ss_pred cEE-EEEEeccchhhhhh
Confidence 888 89998765554443
No 319
>PRK04043 tolB translocation protein TolB; Provisional
Probab=96.40 E-value=0.02 Score=69.92 Aligned_cols=175 Identities=12% Similarity=0.006 Sum_probs=99.0
Q ss_pred cccCCCCCCCCceEEE-EEeec--c-eeEeeeecccCCCCCccccccccceeeehhhcccCCCcceEeec-CC--Cceee
Q 000722 122 GFASPPPSTKGRHFLV-ICCVN--K-AIFLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFG-SS--DGVIR 194 (1331)
Q Consensus 122 ~V~svafspdg~~lLa-sgs~d--~-iIvwDl~t~~~~~i~~~~~h~~~V~~Vaf~P~s~Spdg~~LasG-s~--DGtIr 194 (1331)
......|+|||+.+++ +...+ . +.++|+.+++.+.+. ...+...+..| +|||+.++.. +. +..|.
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt---~~~g~~~~~~~-----SPDG~~la~~~~~~g~~~Iy 260 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA---SSQGMLVVSDV-----SKDGSKLLLTMAPKGQPDIY 260 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEe---cCCCcEEeeEE-----CCCCCEEEEEEccCCCcEEE
Confidence 3446789999985344 33321 2 335688876544432 23344556678 7899876543 32 35688
Q ss_pred eeehhhheeehhhcCCCccchhhhhHhhhccccEEEeecC-CCc--eEEEEeccCCCccccccccceeeeccCcEEEEEe
Q 000722 195 VLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGG-SDG--LLILWSADHGQDSRELVPKLSLKAHDGGVVAVEL 271 (1331)
Q Consensus 195 lWDl~t~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs-~Dg--tIrVWDl~tg~~~~~~~~~~~l~gH~~~V~svaf 271 (1331)
++|+.+++..+ +. .+........ ++|||+.|+-.+ ..+ .|.+.|+.+++..+. +..+. ....|
T Consensus 261 ~~dl~~g~~~~-LT-~~~~~d~~p~---~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rl-----t~~g~----~~~~~ 326 (419)
T PRK04043 261 LYDTNTKTLTQ-IT-NYPGIDVNGN---FVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQV-----VFHGK----NNSSV 326 (419)
T ss_pred EEECCCCcEEE-cc-cCCCccCccE---ECCCCCEEEEEECCCCCceEEEEECCCCCeEeC-----ccCCC----cCceE
Confidence 88887776443 32 2322222233 689997665544 333 577778877653221 11221 12489
Q ss_pred chhccCCCcEEEeecC---------ceeEeeeccchhhhcccCCCCcccccccccccCCCCCCCcee
Q 000722 272 SRVMGGSPQLITIGAD---------KTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDIL 329 (1331)
Q Consensus 272 sp~~~dg~~LaSgs~D---------g~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg~lL 329 (1331)
+| ++++|+-.+.. ..|.+.|+.++.. +.+ .... ......|+|||+.|
T Consensus 327 SP---DG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~L------T~~~-~~~~p~~SPDG~~I 382 (419)
T PRK04043 327 ST---YKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI-RRL------TANG-VNQFPRFSSDGGSI 382 (419)
T ss_pred CC---CCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe-EEC------CCCC-CcCCeEECCCCCEE
Confidence 99 78877765543 3677778777653 222 1111 12257799999955
No 320
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=96.39 E-value=0.023 Score=63.20 Aligned_cols=149 Identities=17% Similarity=0.070 Sum_probs=79.7
Q ss_pred EEEEEeecceeEeeeecccCCCCCccccccccceeeehhhcccCCCcceEeecCCCceeeeeehhhheeehhhcCCCccc
Q 000722 135 FLVICCVNKAIFLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGS 214 (1331)
Q Consensus 135 lLasgs~d~iIvwDl~t~~~~~i~~~~~h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~~~v~~~~~gH~~~ 214 (1331)
+++...++.++.||..+++.... ... ...+..... .++..+++++.|+.|+.+|..+|+.+..........
T Consensus 39 v~~~~~~~~l~~~d~~tG~~~W~--~~~-~~~~~~~~~------~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~ 109 (238)
T PF13360_consen 39 VYVASGDGNLYALDAKTGKVLWR--FDL-PGPISGAPV------VDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPP 109 (238)
T ss_dssp EEEEETTSEEEEEETTTSEEEEE--EEC-SSCGGSGEE------EETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCT
T ss_pred EEEEcCCCEEEEEECCCCCEEEE--eec-cccccceee------ecccccccccceeeeEecccCCcceeeeeccccccc
Confidence 44444455555778777653221 111 112111111 135566666688899999999998887731122111
Q ss_pred --h-hhhhHhhhccccEEEeecCCCceEEEEeccCCCccccccccc-eeee---ccCcE-EEEEechhccCCCcEEEeec
Q 000722 215 --I-SCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKL-SLKA---HDGGV-VAVELSRVMGGSPQLITIGA 286 (1331)
Q Consensus 215 --V-~~vawf~~spdg~lLaSgs~DgtIrVWDl~tg~~~~~~~~~~-~l~g---H~~~V-~svafsp~~~dg~~LaSgs~ 286 (1331)
+ .... ....++.++.+..++.|..+|..+|+.++...... .... ....+ ..+.+. ++ .+..++.
T Consensus 110 ~~~~~~~~---~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~v~~~~~ 181 (238)
T PF13360_consen 110 AGVRSSSS---PAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVIS----DG-RVYVSSG 181 (238)
T ss_dssp CSTB--SE---EEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECC----TT-EEEEECC
T ss_pred cccccccC---ceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEE----CC-EEEEEcC
Confidence 1 1111 22346677777889999999999998765431100 0000 00111 233333 34 6666666
Q ss_pred Cce-eEeeeccchhhh
Q 000722 287 DKT-LAIWDTVSFKEL 301 (1331)
Q Consensus 287 Dg~-IrIWDl~t~~~l 301 (1331)
++. +.+ |..+++.+
T Consensus 182 ~g~~~~~-d~~tg~~~ 196 (238)
T PF13360_consen 182 DGRVVAV-DLATGEKL 196 (238)
T ss_dssp TSSEEEE-ETTTTEEE
T ss_pred CCeEEEE-ECCCCCEE
Confidence 775 555 99988744
No 321
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=96.36 E-value=0.019 Score=63.81 Aligned_cols=107 Identities=19% Similarity=0.125 Sum_probs=64.3
Q ss_pred CcceEeecCCCceeeeeehhhheeehhhcCCCccch-h------hhhHhhhccccEEEeecCCCce-EEEEeccCCCccc
Q 000722 180 DVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSI-S------CLMTFMASSGEALLVSGGSDGL-LILWSADHGQDSR 251 (1331)
Q Consensus 180 dg~~LasGs~DGtIrlWDl~t~~~v~~~~~gH~~~V-~------~vawf~~spdg~lLaSgs~Dgt-IrVWDl~tg~~~~ 251 (1331)
++..++.+..++.|..+|.++|+.+.... .+.... . ....-....++ .+..++.++. +.+ |+.+++.++
T Consensus 121 ~~~~~~~~~~~g~l~~~d~~tG~~~w~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d~~tg~~~w 197 (238)
T PF13360_consen 121 DGDRLYVGTSSGKLVALDPKTGKLLWKYP-VGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAV-DLATGEKLW 197 (238)
T ss_dssp ETTEEEEEETCSEEEEEETTTTEEEEEEE-SSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEE-ETTTTEEEE
T ss_pred ecCEEEEEeccCcEEEEecCCCcEEEEee-cCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEE-ECCCCCEEE
Confidence 47778888889999999999998877664 222111 0 00000012244 4555555664 555 999887443
Q ss_pred cccccceeeeccCcEEEEEechhccCCCcEEEeecCceeEeeeccchhhh
Q 000722 252 ELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKEL 301 (1331)
Q Consensus 252 ~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l 301 (1331)
+. . ...+..+ ... .+..|+.++.++.|..||.++|+.+
T Consensus 198 ~~------~--~~~~~~~-~~~---~~~~l~~~~~~~~l~~~d~~tG~~~ 235 (238)
T PF13360_consen 198 SK------P--ISGIYSL-PSV---DGGTLYVTSSDGRLYALDLKTGKVV 235 (238)
T ss_dssp EE------C--SS-ECEC-EEC---CCTEEEEEETTTEEEEEETTTTEEE
T ss_pred Ee------c--CCCccCC-cee---eCCEEEEEeCCCEEEEEECCCCCEE
Confidence 21 1 1112221 222 5667777779999999999998754
No 322
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=96.32 E-value=0.038 Score=69.67 Aligned_cols=144 Identities=13% Similarity=0.160 Sum_probs=101.6
Q ss_pred CCceEEEEEeecceeEe-eeecccCCCCCccccccccceeeehhhcccCCCcceEeecCC---------Cceeeeeehhh
Q 000722 131 KGRHFLVICCVNKAIFL-DLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSS---------DGVIRVLSMIS 200 (1331)
Q Consensus 131 dg~~lLasgs~d~iIvw-Dl~t~~~~~i~~~~~h~~~V~~Vaf~P~s~Spdg~~LasGs~---------DGtIrlWDl~t 200 (1331)
+++ ++.+|...+.+.+ |.++. +.+.++..|.+.|..+.. .|+.|++++. |..|+|||++.
T Consensus 186 Nnr-~lf~G~t~G~V~LrD~~s~--~~iht~~aHs~siSDfDv-------~GNlLitCG~S~R~~~l~~D~FvkVYDLRm 255 (1118)
T KOG1275|consen 186 NNR-NLFCGDTRGTVFLRDPNSF--ETIHTFDAHSGSISDFDV-------QGNLLITCGYSMRRYNLAMDPFVKVYDLRM 255 (1118)
T ss_pred cCc-EEEeecccceEEeecCCcC--ceeeeeeccccceeeeec-------cCCeEEEeecccccccccccchhhhhhhhh
Confidence 444 7888888888755 88874 467788999999999888 6888988874 66789999998
Q ss_pred heeehhhcCCCccchhhhhHhhhccc-cEEEeecCCCceEEEEeccCCCccccccccceeeeccCcEEEEEechhccCCC
Q 000722 201 WKLVRRYTGGHKGSISCLMTFMASSG-EALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSP 279 (1331)
Q Consensus 201 ~~~v~~~~~gH~~~V~~vawf~~spd-g~lLaSgs~DgtIrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~ 279 (1331)
.+.+.-+. -|.++ .-+. |+|. ...++.++..|...+-|..+...-. ....-+......+..+++++ +++
T Consensus 256 mral~PI~-~~~~P-~flr---f~Psl~t~~~V~S~sGq~q~vd~~~lsNP~--~~~~~v~p~~s~i~~fDiSs---n~~ 325 (1118)
T KOG1275|consen 256 MRALSPIQ-FPYGP-QFLR---FHPSLTTRLAVTSQSGQFQFVDTATLSNPP--AGVKMVNPNGSGISAFDISS---NGD 325 (1118)
T ss_pred hhccCCcc-cccCc-hhhh---hcccccceEEEEecccceeeccccccCCCc--cceeEEccCCCcceeEEecC---CCc
Confidence 77766553 23333 2233 4443 4577888899999988843221100 00111233345589999998 899
Q ss_pred cEEEeecCceeEeee
Q 000722 280 QLITIGADKTLAIWD 294 (1331)
Q Consensus 280 ~LaSgs~Dg~IrIWD 294 (1331)
.++.|..+|.|.+|.
T Consensus 326 alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 326 ALAFGDHEGHVNLWA 340 (1118)
T ss_pred eEEEecccCcEeeec
Confidence 999999999999997
No 323
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.30 E-value=0.0045 Score=45.96 Aligned_cols=36 Identities=17% Similarity=0.539 Sum_probs=33.2
Q ss_pred ccccccCCCcEEEEEeecCCceeEeecCCCceeeec
Q 000722 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWN 39 (1331)
Q Consensus 4 l~~L~gHs~~V~~lafSPdg~~LaSgs~DGtV~VWD 39 (1331)
+..+..|...|.++.|++++.++++++.|+.+++||
T Consensus 5 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 5 LKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 456788999999999999999999999999999997
No 324
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=96.28 E-value=0.023 Score=64.05 Aligned_cols=189 Identities=14% Similarity=0.022 Sum_probs=102.2
Q ss_pred CCCC-CCceEEEEEeecc-eeEeeeecccCCCCCccccccccceeeehhhcccCCCcceEeecCCCceeeeeehhhheee
Q 000722 127 PPST-KGRHFLVICCVNK-AIFLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLV 204 (1331)
Q Consensus 127 afsp-dg~~lLasgs~d~-iIvwDl~t~~~~~i~~~~~h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~~~v 204 (1331)
.|.+ ++. ++++....+ +++|+..++.... .. ......+.+. .+++.++++. .++ +.++|+.+++..
T Consensus 6 ~~d~~~g~-l~~~D~~~~~i~~~~~~~~~~~~---~~--~~~~~G~~~~----~~~g~l~v~~-~~~-~~~~d~~~g~~~ 73 (246)
T PF08450_consen 6 VWDPRDGR-LYWVDIPGGRIYRVDPDTGEVEV---ID--LPGPNGMAFD----RPDGRLYVAD-SGG-IAVVDPDTGKVT 73 (246)
T ss_dssp EEETTTTE-EEEEETTTTEEEEEETTTTEEEE---EE--SSSEEEEEEE----CTTSEEEEEE-TTC-EEEEETTTTEEE
T ss_pred EEECCCCE-EEEEEcCCCEEEEEECCCCeEEE---Ee--cCCCceEEEE----ccCCEEEEEE-cCc-eEEEecCCCcEE
Confidence 4566 454 777765555 4488877654321 11 1226667773 1455555444 444 555698887544
Q ss_pred hhhc---CC-CccchhhhhHhhhccccEEEeecCCC--------ceEEEEeccCCCccccccccceeeeccCcEEEEEec
Q 000722 205 RRYT---GG-HKGSISCLMTFMASSGEALLVSGGSD--------GLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELS 272 (1331)
Q Consensus 205 ~~~~---~g-H~~~V~~vawf~~spdg~lLaSgs~D--------gtIrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafs 272 (1331)
.... .. .....+.++ +.++|++.++.... |.|..++.. ++.. .+...-...+.++|+
T Consensus 74 ~~~~~~~~~~~~~~~ND~~---vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~-------~~~~~~~~pNGi~~s 142 (246)
T PF08450_consen 74 VLADLPDGGVPFNRPNDVA---VDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVT-------VVADGLGFPNGIAFS 142 (246)
T ss_dssp EEEEEETTCSCTEEEEEEE---E-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEE-------EEEEEESSEEEEEEE
T ss_pred EEeeccCCCcccCCCceEE---EcCCCCEEEEecCCCccccccccceEEECCC-CeEE-------EEecCcccccceEEC
Confidence 3332 12 345667776 78899988875543 567777766 3311 122234557899999
Q ss_pred hhccCCCcE-EEeecCceeEeeeccchhh-hcccCCCCcccccccccccCCCCCCCceeeee-ecceeeeee
Q 000722 273 RVMGGSPQL-ITIGADKTLAIWDTVSFKE-LRRIKPVPKLACHSVASWCHPRAPNLDILTCV-KDSHIWAIE 341 (1331)
Q Consensus 273 p~~~dg~~L-aSgs~Dg~IrIWDl~t~~~-l~~~~~~~~l~~H~~~V~svafspdg~lLa~s-~Dg~IWdl~ 341 (1331)
| +++.| ++-+..+.|..|++..... +........+.......-.+++..+|.+.++. ..++|+.++
T Consensus 143 ~---dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~ 211 (246)
T PF08450_consen 143 P---DGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFD 211 (246)
T ss_dssp T---TSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEE
T ss_pred C---cchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEEC
Confidence 9 67655 5667788899998864322 11111000111111223456777788766544 345566555
No 325
>PRK04043 tolB translocation protein TolB; Provisional
Probab=96.27 E-value=0.061 Score=65.79 Aligned_cols=145 Identities=20% Similarity=0.098 Sum_probs=81.7
Q ss_pred CCCCCCCceEEEEEeec---ceeEeeeecccCCCCCccccccccceeeehhhcccCCCcceEeecCCC-c--eeeeeehh
Q 000722 126 PPPSTKGRHFLVICCVN---KAIFLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSD-G--VIRVLSMI 199 (1331)
Q Consensus 126 vafspdg~~lLasgs~d---~iIvwDl~t~~~~~i~~~~~h~~~V~~Vaf~P~s~Spdg~~LasGs~D-G--tIrlWDl~ 199 (1331)
..|+|||+.++++.+.+ .+.++|+.++..+.+ ..+......-.| +|||+.|+..++. + .|.++|+.
T Consensus 238 ~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~L---T~~~~~d~~p~~-----SPDG~~I~F~Sdr~g~~~Iy~~dl~ 309 (419)
T PRK04043 238 SDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQI---TNYPGIDVNGNF-----VEDDKRIVFVSDRLGYPNIFMKKLN 309 (419)
T ss_pred eEECCCCCEEEEEEccCCCcEEEEEECCCCcEEEc---ccCCCccCccEE-----CCCCCEEEEEECCCCCceEEEEECC
Confidence 45899998666665433 233557766543332 222222233467 7899887776532 3 57778887
Q ss_pred hheeehhhcCCCccchhhhhHhhhccccEEEeecCCC---------ceEEEEeccCCCccccccccceeeeccCcEEEEE
Q 000722 200 SWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSD---------GLLILWSADHGQDSRELVPKLSLKAHDGGVVAVE 270 (1331)
Q Consensus 200 t~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~D---------gtIrVWDl~tg~~~~~~~~~~~l~gH~~~V~sva 270 (1331)
+++..+....+. . ... ++|+|+.|+..+.. ..|.+.|+.++.. +. +... .......
T Consensus 310 ~g~~~rlt~~g~--~--~~~---~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~------LT~~-~~~~~p~ 374 (419)
T PRK04043 310 SGSVEQVVFHGK--N--NSS---VSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI-RR------LTAN-GVNQFPR 374 (419)
T ss_pred CCCeEeCccCCC--c--Cce---ECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe-EE------CCCC-CCcCCeE
Confidence 776644332122 1 123 68999987765543 3677788877652 11 1211 1223578
Q ss_pred echhccCCCcEEEeecC-c--eeEeeecc
Q 000722 271 LSRVMGGSPQLITIGAD-K--TLAIWDTV 296 (1331)
Q Consensus 271 fsp~~~dg~~LaSgs~D-g--~IrIWDl~ 296 (1331)
|+| +++.|+-.+.+ + .+.+.++.
T Consensus 375 ~SP---DG~~I~f~~~~~~~~~L~~~~l~ 400 (419)
T PRK04043 375 FSS---DGGSIMFIKYLGNQSALGIIRLN 400 (419)
T ss_pred ECC---CCCEEEEEEccCCcEEEEEEecC
Confidence 999 77766655432 2 24455554
No 326
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=96.20 E-value=0.022 Score=69.38 Aligned_cols=74 Identities=19% Similarity=0.233 Sum_probs=61.7
Q ss_pred CCccchhhhhHhhhccccEEEeecCCCceEEEEeccCCCccccccccceeeeccCcEEEEEechhccCCCcEEEeecCce
Q 000722 210 GHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKT 289 (1331)
Q Consensus 210 gH~~~V~~vawf~~spdg~lLaSgs~DgtIrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~ 289 (1331)
.....|.|++ .+|+...|+.|+.||+|++||...+... +..+.-.++.++||| ++.++++|+..|.
T Consensus 257 pL~s~v~~ca---~sp~E~kLvlGC~DgSiiLyD~~~~~t~--------~~ka~~~P~~iaWHp---~gai~~V~s~qGe 322 (545)
T PF11768_consen 257 PLPSQVICCA---RSPSEDKLVLGCEDGSIILYDTTRGVTL--------LAKAEFIPTLIAWHP---DGAIFVVGSEQGE 322 (545)
T ss_pred ecCCcceEEe---cCcccceEEEEecCCeEEEEEcCCCeee--------eeeecccceEEEEcC---CCcEEEEEcCCce
Confidence 5778888887 7999999999999999999998766321 223344578999999 8999999999999
Q ss_pred eEeeeccc
Q 000722 290 LAIWDTVS 297 (1331)
Q Consensus 290 IrIWDl~t 297 (1331)
+.+||+.-
T Consensus 323 lQ~FD~AL 330 (545)
T PF11768_consen 323 LQCFDMAL 330 (545)
T ss_pred EEEEEeec
Confidence 99999763
No 327
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.18 E-value=0.024 Score=71.23 Aligned_cols=206 Identities=16% Similarity=0.134 Sum_probs=118.5
Q ss_pred cEEEEEeecCCceeEeecCCCceeeeccccceEEeeeccCCcccchhhh--hhhhhhcccccccCCCCcccccCCceeEE
Q 000722 13 KIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVG--AKLEKLAEGELEHKGKPTEAMRGGSVKQV 90 (1331)
Q Consensus 13 ~V~~lafSPdg~~LaSgs~DGtV~VWD~~tg~~i~s~~~~~~~~i~~vs--pdg~~Lasgs~d~~g~~l~~l~gg~V~sV 90 (1331)
.|+| |++.+..++-|+.+|.|.+.|- .-+.++.|+.+..+.+..+- .+...|++...|..+.
T Consensus 27 ~isc--~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~n------------- 90 (933)
T KOG2114|consen 27 AISC--CSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGN------------- 90 (933)
T ss_pred ceeE--EcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCCC-------------
Confidence 5555 6788889999999999888873 34555777755433222222 1222344333332111
Q ss_pred eeecchhhHHHHhhhc------cc--cccCCcccccccccccCCCCCCCCceEEEEEeeccee-Ee--eeecccCCCCCc
Q 000722 91 NFYDDDVRFWQLWRNR------AA--AAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FL--DLVTMRGRDIPK 159 (1331)
Q Consensus 91 af~DgtIrvWdl~tg~------~l--~~~~~~~~~~~~~~V~svafspdg~~lLasgs~d~iI-vw--Dl~t~~~~~i~~ 159 (1331)
-..+++|+++.-+ |+ +............++.+++.+.+-+ .+|+|-.+|.+ ++ |+...+......
T Consensus 91 ---p~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~-~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~ 166 (933)
T KOG2114|consen 91 ---PVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLK-TIVCGFTNGLVICYKGDILRDRGSRQDY 166 (933)
T ss_pred ---ceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEcccc-EEEEEecCcEEEEEcCcchhccccceee
Confidence 1157889986542 11 0111111111244666777787765 88999888887 44 655444433333
Q ss_pred cccccccceeeehhhcccCCCcceEeecCCCceeeeeehhhheeehhhcCCCccchhhhhHhhhccccEEEeecCCCceE
Q 000722 160 QELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLL 239 (1331)
Q Consensus 160 ~~~h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtI 239 (1331)
......+|+.+.+ ..++..++....-..|.+|.+....+.......|...++|.. +++....|+.++ +..+
T Consensus 167 ~~~~~~pITgL~~-----~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss---~~~~t~qfIca~-~e~l 237 (933)
T KOG2114|consen 167 SHRGKEPITGLAL-----RSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSS---FSDGTYQFICAG-SEFL 237 (933)
T ss_pred eccCCCCceeeEE-----ecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeee---cCCCCccEEEec-CceE
Confidence 3444779999999 445655333334456899998844423332337888888886 455444344333 4578
Q ss_pred EEEeccCC
Q 000722 240 ILWSADHG 247 (1331)
Q Consensus 240 rVWDl~tg 247 (1331)
.+||....
T Consensus 238 ~fY~sd~~ 245 (933)
T KOG2114|consen 238 YFYDSDGR 245 (933)
T ss_pred EEEcCCCc
Confidence 88987643
No 328
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.14 E-value=0.072 Score=67.12 Aligned_cols=199 Identities=12% Similarity=0.126 Sum_probs=119.2
Q ss_pred CCCcceEeecCCCceeeeeehhhheeehhhcCCCccc-hhhhhHhhhccccEEEeecCCCc-----eEEEEeccCCCccc
Q 000722 178 VGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGS-ISCLMTFMASSGEALLVSGGSDG-----LLILWSADHGQDSR 251 (1331)
Q Consensus 178 Spdg~~LasGs~DGtIrlWDl~t~~~v~~~~~gH~~~-V~~vawf~~spdg~lLaSgs~Dg-----tIrVWDl~tg~~~~ 251 (1331)
++.+..++.|+.+|.|.+++-. .+.++.|. .+... |..+ | .-.+.++|++-+.|+ .++|||++..+...
T Consensus 32 ~s~~~~vvigt~~G~V~~Ln~s-~~~~~~fq-a~~~siv~~L-~--~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~ 106 (933)
T KOG2114|consen 32 SSSTGSVVIGTADGRVVILNSS-FQLIRGFQ-AYEQSIVQFL-Y--ILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNN 106 (933)
T ss_pred cCCCceEEEeeccccEEEeccc-ceeeehhe-ecchhhhhHh-h--cccCceEEEEEeecCCCCceEEEEecccccCCCC
Confidence 4578899999999999888743 44556666 66666 5555 2 344446777776664 58999987543211
Q ss_pred c--ccccceeee-----ccCcEEEEEechhccCCCcEEEeecCceeEeeeccchhhhcccCCCCcccccccccccCCCCC
Q 000722 252 E--LVPKLSLKA-----HDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAP 324 (1331)
Q Consensus 252 ~--~~~~~~l~g-----H~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafsp 324 (1331)
. ......+.. ...++.+++.|. +-..+++|-.||.|..+.-+-.+.... ...-...-..+|+.+.+..
T Consensus 107 sP~c~~~~ri~~~~np~~~~p~s~l~Vs~---~l~~Iv~Gf~nG~V~~~~GDi~RDrgs--r~~~~~~~~~pITgL~~~~ 181 (933)
T KOG2114|consen 107 SPQCLYEHRIFTIKNPTNPSPASSLAVSE---DLKTIVCGFTNGLVICYKGDILRDRGS--RQDYSHRGKEPITGLALRS 181 (933)
T ss_pred CcceeeeeeeeccCCCCCCCcceEEEEEc---cccEEEEEecCcEEEEEcCcchhcccc--ceeeeccCCCCceeeEEec
Confidence 0 000001122 245688899987 778999999999999986432111110 0000122345788899888
Q ss_pred CCce-e-eee-ecceeeeeecCccccccccccccccCCCccccccccceEEEEEEeccCCccEeeecceeEEEEeecCCC
Q 000722 325 NLDI-L-TCV-KDSHIWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPR 401 (1331)
Q Consensus 325 dg~l-L-a~s-~Dg~IWdl~~~~~~~l~~~~~~~~~~~~~~~l~~h~~~~I~~la~sp~~~~lLAtGs~DG~Il~VWDlr 401 (1331)
++.. + ++. ..-.+|.+...+ .....+..|+. .+.|..+++. ...+++++.++. .+|+..
T Consensus 182 d~~s~lFv~Tt~~V~~y~l~gr~--------------p~~~~ld~~G~-~lnCss~~~~-t~qfIca~~e~l--~fY~sd 243 (933)
T KOG2114|consen 182 DGKSVLFVATTEQVMLYSLSGRT--------------PSLKVLDNNGI-SLNCSSFSDG-TYQFICAGSEFL--YFYDSD 243 (933)
T ss_pred CCceeEEEEecceeEEEEecCCC--------------cceeeeccCCc-cceeeecCCC-CccEEEecCceE--EEEcCC
Confidence 8774 3 332 222466665321 01223455555 8999999984 444666666665 588876
Q ss_pred CCC
Q 000722 402 SLP 404 (1331)
Q Consensus 402 ~~p 404 (1331)
.+.
T Consensus 244 ~~~ 246 (933)
T KOG2114|consen 244 GRG 246 (933)
T ss_pred Ccc
Confidence 443
No 329
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=96.03 E-value=0.023 Score=70.10 Aligned_cols=118 Identities=19% Similarity=0.239 Sum_probs=86.3
Q ss_pred cceeeehhhcccCCCcceEeecCCCceeeeeehhhheeehhhcCCCccchhhhhHhhhccccEEEeecCCCceEEEEecc
Q 000722 166 SLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSAD 245 (1331)
Q Consensus 166 ~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrVWDl~ 245 (1331)
..+|++- .+++++.|++-|.+++|+-..++....-. +-...+.++. ..+++..+++.|+..|.|.++-++
T Consensus 37 ~lTc~ds-------t~~~l~~GsS~G~lyl~~R~~~~~~~~~~-~~~~~~~~~~--~vs~~e~lvAagt~~g~V~v~ql~ 106 (726)
T KOG3621|consen 37 KLTCVDA-------TEEYLAMGSSAGSVYLYNRHTGEMRKLKN-EGATGITCVR--SVSSVEYLVAAGTASGRVSVFQLN 106 (726)
T ss_pred EEEEeec-------CCceEEEecccceEEEEecCchhhhcccc-cCccceEEEE--EecchhHhhhhhcCCceEEeehhh
Confidence 4556655 78999999999999999977665543322 2244444443 268888899999999999999887
Q ss_pred CCCccccccccce-eeeccCcEEEEEechhccCCCcEEEeecCceeEeeeccc
Q 000722 246 HGQDSRELVPKLS-LKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVS 297 (1331)
Q Consensus 246 tg~~~~~~~~~~~-l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t 297 (1331)
.+..-.. ..... -+.|...|++++|++ ++..+.+|...|+|..-.+.+
T Consensus 107 ~~~p~~~-~~~t~~d~~~~~rVTal~Ws~---~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 107 KELPRDL-DYVTPCDKSHKCRVTALEWSK---NGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred ccCCCcc-eeeccccccCCceEEEEEecc---cccEEeecCCCceEEEEEech
Confidence 7432111 01111 134788999999999 899999999999999988876
No 330
>PRK02888 nitrous-oxide reductase; Validated
Probab=95.89 E-value=0.14 Score=64.07 Aligned_cols=99 Identities=12% Similarity=0.112 Sum_probs=60.3
Q ss_pred ceeeeeehhh-----heeehhhcCCCccchhhhhHhhhccccEEEe-ecCCCceEEEEeccCCCccc--cccccceeee-
Q 000722 191 GVIRVLSMIS-----WKLVRRYTGGHKGSISCLMTFMASSGEALLV-SGGSDGLLILWSADHGQDSR--ELVPKLSLKA- 261 (1331)
Q Consensus 191 GtIrlWDl~t-----~~~v~~~~~gH~~~V~~vawf~~spdg~lLa-Sgs~DgtIrVWDl~tg~~~~--~~~~~~~l~g- 261 (1331)
+.|.++|..+ .+.+..+. -......+. ++|||++++ ++..+.+|.|.|+.+.+... .+.+...+.+
T Consensus 296 n~V~VID~~t~~~~~~~v~~yIP--VGKsPHGV~---vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvae 370 (635)
T PRK02888 296 SKVPVVDGRKAANAGSALTRYVP--VPKNPHGVN---TSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAE 370 (635)
T ss_pred CEEEEEECCccccCCcceEEEEE--CCCCccceE---ECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEe
Confidence 4466666655 23333332 223344454 789998765 45579999999998754210 0111111111
Q ss_pred --ccCcEEEEEechhccCCCcEEEeecCceeEeeeccc
Q 000722 262 --HDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVS 297 (1331)
Q Consensus 262 --H~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t 297 (1331)
-..+....+|.+ ++....|-.-|..|..||+..
T Consensus 371 vevGlGPLHTaFDg---~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 371 PELGLGPLHTAFDG---RGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred eccCCCcceEEECC---CCCEEEeEeecceeEEEehHH
Confidence 122345678887 778888888999999999986
No 331
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=95.82 E-value=0.0075 Score=73.21 Aligned_cols=207 Identities=13% Similarity=0.087 Sum_probs=113.2
Q ss_pred CCcEEEEEeecCC--ceeEeecCCCceeeeccccceEE-eeeccCCcccchhhh---hhhhhhcccccccCCCCcccccC
Q 000722 11 NDKIVKIQLHPTH--PWLVTADASDHVSVWNWEHRQVI-YELKAGGVDQRRLVG---AKLEKLAEGELEHKGKPTEAMRG 84 (1331)
Q Consensus 11 s~~V~~lafSPdg--~~LaSgs~DGtV~VWD~~tg~~i-~s~~~~~~~~i~~vs---pdg~~Lasgs~d~~g~~l~~l~g 84 (1331)
+..+.|+++.-+. ..++.|..+|.|-+-.++...-- +++..++.....+.+ .|-..|+.|.+.
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldk----------- 124 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDK----------- 124 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhh-----------
Confidence 4567888876543 48888999999988776532211 222211111111111 233444443211
Q ss_pred CceeEEeeecchhhHHHHhhhccccccCCcccccccccccCCCCCCCCceEEEEEeeccee-EeeeecccCCCCCccccc
Q 000722 85 GSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQELD 163 (1331)
Q Consensus 85 g~V~sVaf~DgtIrvWdl~tg~~l~~~~~~~~~~~~~~V~svafspdg~~lLasgs~d~iI-vwDl~t~~~~~i~~~~~h 163 (1331)
.. .|..+.+||+.++-....+...+.+.......+++|..+.+ ++.+|...+.+ ++|++.. ........
T Consensus 125 hr------nds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~k-lvlaGm~sr~~~ifdlRqs---~~~~~svn 194 (783)
T KOG1008|consen 125 HR------NDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTK-LVLAGMTSRSVHIFDLRQS---LDSVSSVN 194 (783)
T ss_pred hc------ccCCccceecccccCCCccccccccccccCccccccccCcc-hhhcccccchhhhhhhhhh---hhhhhhhh
Confidence 11 47789999998773322222222222344566888887776 77777766555 5676532 11122333
Q ss_pred cccceeeehhhcccCC-CcceEeecCCCceeeeee-hhh-heeehhhcC---CCccchhhhhHhhhccccEEEeecC-CC
Q 000722 164 NKSLVCMEFLSRSAVG-DVPLVAFGSSDGVIRVLS-MIS-WKLVRRYTG---GHKGSISCLMTFMASSGEALLVSGG-SD 236 (1331)
Q Consensus 164 ~~~V~~Vaf~P~s~Sp-dg~~LasGs~DGtIrlWD-l~t-~~~v~~~~~---gH~~~V~~vawf~~spdg~lLaSgs-~D 236 (1331)
.+.+..+.. +| .+.++++-. ||.|-+|| ..+ ..++..+.. .....+..++|+.- ..| ++++.. ..
T Consensus 195 Tk~vqG~tV-----dp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPt-rtg-lla~l~RdS 266 (783)
T KOG1008|consen 195 TKYVQGITV-----DPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPT-RTG-LLAVLSRDS 266 (783)
T ss_pred hhhccccee-----cCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccC-Ccc-hhhhhccCc
Confidence 456666777 44 566776665 99999999 333 233333320 11123778887522 234 555555 55
Q ss_pred ceEEEEeccC
Q 000722 237 GLLILWSADH 246 (1331)
Q Consensus 237 gtIrVWDl~t 246 (1331)
++|+++|+..
T Consensus 267 ~tIrlydi~~ 276 (783)
T KOG1008|consen 267 ITIRLYDICV 276 (783)
T ss_pred ceEEEecccc
Confidence 8899999863
No 332
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=95.64 E-value=0.27 Score=56.79 Aligned_cols=204 Identities=11% Similarity=0.049 Sum_probs=116.9
Q ss_pred ccCCCCCCCCceEEEEEeeccee--EeeeecccCCCCCccccccccceeeehhhcccCCCcceEeecC-----CCceeee
Q 000722 123 FASPPPSTKGRHFLVICCVNKAI--FLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGS-----SDGVIRV 195 (1331)
Q Consensus 123 V~svafspdg~~lLasgs~d~iI--vwDl~t~~~~~i~~~~~h~~~V~~Vaf~P~s~Spdg~~LasGs-----~DGtIrl 195 (1331)
...++.+|.....++.+..-+.. +||..+++.............--.-.| |+||++|++.- ..|.|-|
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~f-----s~dG~~LytTEnd~~~g~G~IgV 81 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVF-----SPDGRLLYTTENDYETGRGVIGV 81 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEE-----cCCCCEEEEeccccCCCcEEEEE
Confidence 34678899766688888776654 679888654321111111122223567 78999998864 4589999
Q ss_pred eehh-hheeehhhcCCCccchhhhhHhhhccccEEEeecC------------------CCceEEEEeccCCCcccccccc
Q 000722 196 LSMI-SWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGG------------------SDGLLILWSADHGQDSRELVPK 256 (1331)
Q Consensus 196 WDl~-t~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs------------------~DgtIrVWDl~tg~~~~~~~~~ 256 (1331)
||.. +.+.+..+. .|.-.-..+. ..|||..|+.+- .+-.+...|..+|+.+.++
T Consensus 82 yd~~~~~~ri~E~~-s~GIGPHel~---l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~--- 154 (305)
T PF07433_consen 82 YDAARGYRRIGEFP-SHGIGPHELL---LMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQV--- 154 (305)
T ss_pred EECcCCcEEEeEec-CCCcChhhEE---EcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeee---
Confidence 9998 566677775 5554555554 577885555431 1223445566667654432
Q ss_pred cee--eeccCcEEEEEechhccCCCcEEEeecCce-------eEeeeccchhhhcccCCC-CcccccccccccCCCCCCC
Q 000722 257 LSL--KAHDGGVVAVELSRVMGGSPQLITIGADKT-------LAIWDTVSFKELRRIKPV-PKLACHSVASWCHPRAPNL 326 (1331)
Q Consensus 257 ~~l--~gH~~~V~svafsp~~~dg~~LaSgs~Dg~-------IrIWDl~t~~~l~~~~~~-~~l~~H~~~V~svafspdg 326 (1331)
.+ .-|...|..+++.+ ++..++..-..|. |-+++. +..++.+... .....-.+.+-+|++++++
T Consensus 155 -~Lp~~~~~lSiRHLa~~~---~G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g 228 (305)
T PF07433_consen 155 -ELPPDLHQLSIRHLAVDG---DGTVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQWRRLNGYIGSIAADRDG 228 (305)
T ss_pred -ecCccccccceeeEEecC---CCcEEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHHHhhCCceEEEEEeCCC
Confidence 23 44677789999987 5544443332221 233332 2222221111 1112334566689999999
Q ss_pred ceeee-e-ecce--eeeeecCc
Q 000722 327 DILTC-V-KDSH--IWAIEHPT 344 (1331)
Q Consensus 327 ~lLa~-s-~Dg~--IWdl~~~~ 344 (1331)
.+++. + .-+. +||..++.
T Consensus 229 ~~ia~tsPrGg~~~~~d~~tg~ 250 (305)
T PF07433_consen 229 RLIAVTSPRGGRVAVWDAATGR 250 (305)
T ss_pred CEEEEECCCCCEEEEEECCCCC
Confidence 86643 3 2333 89988753
No 333
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=95.60 E-value=0.038 Score=67.68 Aligned_cols=152 Identities=23% Similarity=0.224 Sum_probs=100.5
Q ss_pred cccccccccCCCcccceeeeeccccchHHHHHHhhhhcccccccCCCCCCCChhhhcccccchhhHHHHHHHHHHHHHHH
Q 000722 942 MGYATEALHLPGISKRLEFDLAMQSNDLKRALQCLITMSNSRDIGQDHPGLDLNDILTLTTKKENIVEAVQGIVKFAKEF 1021 (1331)
Q Consensus 942 ~g~~e~Al~~~~ds~~~~f~la~~~g~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w 1021 (1331)
-|-...|..+-+- ..+|--||.-||+++|...+..+... .+ -..+|
T Consensus 435 e~takvayeld~~--~iefgaaid~~df~ra~afles~~~~--~d------------------------------a~amw 480 (1636)
T KOG3616|consen 435 EGTAKVAYELDEG--LIEFGAAIDDGDFDRATAFLESLEMG--PD------------------------------AEAMW 480 (1636)
T ss_pred ecceeEEEEecCc--ceecccccccCchHHHHHHHHhhccC--cc------------------------------HHHHH
Confidence 3455566665443 78899999999999999998332222 11 12799
Q ss_pred HhhhhccccccchHHHHHHHHHHHhcccccccccccccccchhhhc--ccccch---hhhhhhHHHHhhccChhhhhhhh
Q 000722 1022 LDLIDAADATGQANIAREALKRLAAAGSVKGALQGHELRGLALRLA--NHGELT---RLSGLVTNLISLGLGREAAFSAA 1096 (1331)
Q Consensus 1022 ~~l~~~al~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~ll~~--~~g~~~---~l~~l~~~~~~~~~~~~~af~~~ 1096 (1331)
++|++.||..||+-+|+.||..+ +.|--|-.+||...++--.+ .-|+-+ +.+.|+.+..++=+ .+-.+-+
T Consensus 481 ~~laelale~~nl~iaercfaai---~dvak~r~lhd~~eiadeas~~~ggdgt~fykvra~lail~kkfk--~ae~ifl 555 (1636)
T KOG3616|consen 481 IRLAELALEAGNLFIAERCFAAI---GDVAKARFLHDILEIADEASIEIGGDGTDFYKVRAMLAILEKKFK--EAEMIFL 555 (1636)
T ss_pred HHHHHHHHHhccchHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhHhhCCCCchHHHHHHHHHHHHhhhh--HHHHHHH
Confidence 99999999999999999999988 65544444444333322221 123333 33444333333222 1111222
Q ss_pred hcCchHHHHHHhhhhhhHHHHHHhhhccCCCcHHHH
Q 000722 1097 ILGDNALMEKAWQDTGMLAEAVLHAHAHGRPSLKNL 1132 (1331)
Q Consensus 1097 ~lgd~~~~~~~l~~~~~~~~A~~~A~~~~~~~~~~~ 1132 (1331)
-.++.++++-.+++--++.||+..|+..|.|.+..+
T Consensus 556 eqn~te~aigmy~~lhkwde~i~lae~~~~p~~ekl 591 (1636)
T KOG3616|consen 556 EQNATEEAIGMYQELHKWDEAIALAEAKGHPALEKL 591 (1636)
T ss_pred hcccHHHHHHHHHHHHhHHHHHHHHHhcCChHHHHH
Confidence 468899999999999999999999999998776554
No 334
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=95.25 E-value=0.028 Score=68.57 Aligned_cols=74 Identities=14% Similarity=0.143 Sum_probs=58.8
Q ss_pred ccccceeeehhhcccCCCcceEeecCCCceeeeeehhhheeehhhcCCCccchhhhhHhhhccccEEEeecCCCceEEEE
Q 000722 163 DNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILW 242 (1331)
Q Consensus 163 h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrVW 242 (1331)
....|.|+++ +|+...++.|+.||+|.+||...+... +. .+.-..+.++| +|+|.+|++|+.-|.+.+|
T Consensus 258 L~s~v~~ca~-----sp~E~kLvlGC~DgSiiLyD~~~~~t~--~~-ka~~~P~~iaW---Hp~gai~~V~s~qGelQ~F 326 (545)
T PF11768_consen 258 LPSQVICCAR-----SPSEDKLVLGCEDGSIILYDTTRGVTL--LA-KAEFIPTLIAW---HPDGAIFVVGSEQGELQCF 326 (545)
T ss_pred cCCcceEEec-----CcccceEEEEecCCeEEEEEcCCCeee--ee-eecccceEEEE---cCCCcEEEEEcCCceEEEE
Confidence 3678999999 788999999999999999998755222 11 23344566774 8999999999999999999
Q ss_pred eccCC
Q 000722 243 SADHG 247 (1331)
Q Consensus 243 Dl~tg 247 (1331)
|+.-.
T Consensus 327 D~ALs 331 (545)
T PF11768_consen 327 DMALS 331 (545)
T ss_pred EeecC
Confidence 98643
No 335
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=95.08 E-value=0.082 Score=65.47 Aligned_cols=159 Identities=19% Similarity=0.173 Sum_probs=99.4
Q ss_pred ccCCCCCCCCceEEEEEeecceeEe-eeecccCCCCCccccccccceeeehhhcccCCCcceEeecCCCceeeeeehhhh
Q 000722 123 FASPPPSTKGRHFLVICCVNKAIFL-DLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISW 201 (1331)
Q Consensus 123 V~svafspdg~~lLasgs~d~iIvw-Dl~t~~~~~i~~~~~h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~ 201 (1331)
|.--+++..++ +++.|+..+.+.| +-..+..+.++ ..+....+..+.. +++..++|.|+..|.|.++-+...
T Consensus 36 v~lTc~dst~~-~l~~GsS~G~lyl~~R~~~~~~~~~-~~~~~~~~~~~~v-----s~~e~lvAagt~~g~V~v~ql~~~ 108 (726)
T KOG3621|consen 36 VKLTCVDATEE-YLAMGSSAGSVYLYNRHTGEMRKLK-NEGATGITCVRSV-----SSVEYLVAAGTASGRVSVFQLNKE 108 (726)
T ss_pred EEEEEeecCCc-eEEEecccceEEEEecCchhhhccc-ccCccceEEEEEe-----cchhHhhhhhcCCceEEeehhhcc
Confidence 33344566676 7888887777755 66555433322 2222233333444 667889999999999999988753
Q ss_pred e-----eehhhcCCCccchhhhhHhhhccccEEEeecCCCceEEEEeccCCCccccccccceeeeccCcEEEEEechhcc
Q 000722 202 K-----LVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMG 276 (1331)
Q Consensus 202 ~-----~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~ 276 (1331)
. .+......|...|+|++| ++++..|.+|..-|+|.+-.+.... .. ..+...+-.-++.|.-+.+..
T Consensus 109 ~p~~~~~~t~~d~~~~~rVTal~W---s~~~~k~ysGD~~Gkv~~~~L~s~~-~~-~~~~q~il~~ds~IVQlD~~q--- 180 (726)
T KOG3621|consen 109 LPRDLDYVTPCDKSHKCRVTALEW---SKNGMKLYSGDSQGKVVLTELDSRQ-AF-LSKSQEILSEDSEIVQLDYLQ--- 180 (726)
T ss_pred CCCcceeeccccccCCceEEEEEe---cccccEEeecCCCceEEEEEechhh-hh-ccccceeeccCcceEEeeccc---
Confidence 2 223333357899999996 8999999999999999998887631 11 112223344556777777763
Q ss_pred CCCcEEEeecCceeEeeeccchh
Q 000722 277 GSPQLITIGADKTLAIWDTVSFK 299 (1331)
Q Consensus 277 dg~~LaSgs~Dg~IrIWDl~t~~ 299 (1331)
+.+|++...- ..++++..++
T Consensus 181 -~~LLVStl~r--~~Lc~tE~et 200 (726)
T KOG3621|consen 181 -SYLLVSTLTR--CILCQTEAET 200 (726)
T ss_pred -ceehHhhhhh--hheeecchhH
Confidence 4445444332 2355555443
No 336
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=95.06 E-value=1.2 Score=55.89 Aligned_cols=111 Identities=16% Similarity=0.186 Sum_probs=61.3
Q ss_pred CCceeeeeehhhheeehhhcCCCccchh----------h-----hhHh--hhccccEEEeecCCCc--------------
Q 000722 189 SDGVIRVLSMISWKLVRRYTGGHKGSIS----------C-----LMTF--MASSGEALLVSGGSDG-------------- 237 (1331)
Q Consensus 189 ~DGtIrlWDl~t~~~v~~~~~gH~~~V~----------~-----vawf--~~spdg~lLaSgs~Dg-------------- 237 (1331)
.+|.|..+|..+++.+-.+...+..... + ..|. .+.+.+.+++.++.|+
T Consensus 173 ~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~ 252 (488)
T cd00216 173 VRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDN 252 (488)
T ss_pred CCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCC
Confidence 4688999999998877665422111000 0 0010 0223345666666554
Q ss_pred ----eEEEEeccCCCccccccccceeeeccC----cEEEEEechhc-cCC---CcEEEeecCceeEeeeccchhhhcc
Q 000722 238 ----LLILWSADHGQDSRELVPKLSLKAHDG----GVVAVELSRVM-GGS---PQLITIGADKTLAIWDTVSFKELRR 303 (1331)
Q Consensus 238 ----tIrVWDl~tg~~~~~~~~~~~l~gH~~----~V~svafsp~~-~dg---~~LaSgs~Dg~IrIWDl~t~~~l~~ 303 (1331)
.|.-+|..+|+..+.+. ...|.. ......+.+.. -++ ..++.++.+|.+...|..+|+.+.+
T Consensus 253 ~~~~~l~Ald~~tG~~~W~~~----~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~ 326 (488)
T cd00216 253 LYTDSIVALDADTGKVKWFYQ----TTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISA 326 (488)
T ss_pred CceeeEEEEcCCCCCEEEEee----CCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeE
Confidence 79999999998776521 111211 00001111000 022 2677888999999999999987655
No 337
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.06 E-value=0.094 Score=57.90 Aligned_cols=110 Identities=11% Similarity=0.094 Sum_probs=76.2
Q ss_pred CCCceEEEEEeeccee-EeeeecccCCCCCccccccccceeeehhhcccCCCcceEeecCCCceeeeeehhhheeehhhc
Q 000722 130 TKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYT 208 (1331)
Q Consensus 130 pdg~~lLasgs~d~iI-vwDl~t~~~~~i~~~~~h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~~~v~~~~ 208 (1331)
++.+.+++.|+..+.+ -.|.++++...- ..-...|-|-+.. -|++++.|+..|.+++.+..+|.....+.
T Consensus 20 ~dskT~v~igSHs~~~~avd~~sG~~~We---~ilg~RiE~sa~v------vgdfVV~GCy~g~lYfl~~~tGs~~w~f~ 90 (354)
T KOG4649|consen 20 NDSKTLVVIGSHSGIVIAVDPQSGNLIWE---AILGVRIECSAIV------VGDFVVLGCYSGGLYFLCVKTGSQIWNFV 90 (354)
T ss_pred cCCceEEEEecCCceEEEecCCCCcEEee---hhhCceeeeeeEE------ECCEEEEEEccCcEEEEEecchhheeeee
Confidence 4455578888877776 558888764321 1113444443331 37789999999999999999997776664
Q ss_pred CCCccchhhhhHhhhccccEEEeecCCCceEEEEeccCCCcccc
Q 000722 209 GGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRE 252 (1331)
Q Consensus 209 ~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrVWDl~tg~~~~~ 252 (1331)
-...|.+-+ ...+++.++..|+.|+..+..|.++..++.+
T Consensus 91 --~~~~vk~~a--~~d~~~glIycgshd~~~yalD~~~~~cVyk 130 (354)
T KOG4649|consen 91 --ILETVKVRA--QCDFDGGLIYCGSHDGNFYALDPKTYGCVYK 130 (354)
T ss_pred --ehhhhccce--EEcCCCceEEEecCCCcEEEecccccceEEe
Confidence 222333322 1467889999999999999999998776653
No 338
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=94.96 E-value=0.037 Score=40.81 Aligned_cols=35 Identities=34% Similarity=0.588 Sum_probs=30.7
Q ss_pred ceeeeccCcEEEEEechhccCCCcEEEeecCceeEeee
Q 000722 257 LSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWD 294 (1331)
Q Consensus 257 ~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWD 294 (1331)
..+..|...|+++.|++ .+.++++++.|+.+++||
T Consensus 6 ~~~~~~~~~i~~~~~~~---~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 6 KTLKGHTGPVTSVAFSP---DGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEecCCceeEEEECC---CCCEEEEecCCCeEEEcC
Confidence 34567888999999998 678999999999999996
No 339
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=94.82 E-value=0.11 Score=64.00 Aligned_cols=134 Identities=19% Similarity=0.152 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHHHHhhhhc-----------cccccchHHHHHHHHHHHhcccccccccccccccchhhhcccccchhhhh
Q 000722 1009 EAVQGIVKFAKEFLDLIDA-----------ADATGQANIAREALKRLAAAGSVKGALQGHELRGLALRLANHGELTRLSG 1077 (1331)
Q Consensus 1009 ~~~~~~~~~~~~w~~l~~~-----------al~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~ll~~~~g~~~~l~~ 1077 (1331)
-.|.|+|--++.|.+-||. -.+++|--+|+.|-.++++.. + -++--..|++-+-.
T Consensus 1153 rgvd~fvaqak~weq~gd~rkav~~~lkinrdst~nd~l~e~~~~kaadl~-------------i-kfl~~d~nme~i~a 1218 (1636)
T KOG3616|consen 1153 RGVDGFVAQAKEWEQAGDWRKAVDALLKINRDSTDNDALAEHCTEKAADLS-------------I-KFLMGDENMEVIGA 1218 (1636)
T ss_pred cccHHHHHHHHHHHhcccHHHHHHHHhhhccCCCCcHHHHHHHHHHHHhhh-------------h-hhcCCccchhhHHh
Confidence 4577888889999887764 245678888888888884221 0 11112234455555
Q ss_pred hhHHHHhhccChhhhhhh-hhcCchHHHHHHhhhhhhHHHHHHhhhccCCCcHHHHHHHHHHHHhhhccCCCCccchhHH
Q 000722 1078 LVTNLISLGLGREAAFSA-AILGDNALMEKAWQDTGMLAEAVLHAHAHGRPSLKNLVEAWNKMLQKEVDHTPTAKTDAAA 1156 (1331)
Q Consensus 1078 l~~~~~~~~~~~~~af~~-~~lgd~~~~~~~l~~~~~~~~A~~~A~~~~~~~~~~~~~~w~~~l~~~~~~~~~~~~~~~~ 1156 (1331)
..-.....|.+ ..|--. +++|-..++|+.|++..+++.|-..|+.|.|....++=+-.|+.|..+..-..-+..|.-.
T Consensus 1219 a~~al~~~~~~-e~aael~l~f~~~keaida~~~~eewakakqvake~~p~~~~~idk~yke~lknegkl~eli~vdvia 1297 (1636)
T KOG3616|consen 1219 AGGALDEAGCH-EAAAELLLLFDLSKEAIDAFCEAEEWAKAKQVAKELDPEMEDEIDKHYKEFLKNEGKLDELIDVDVIA 1297 (1636)
T ss_pred cchhhhccccc-HHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHhCchhhHHHHHHHHHHHhccCccccccchhHHH
Confidence 55556667776 443333 3889999999999999999999999999999999999999999998887766666666544
Q ss_pred H
Q 000722 1157 A 1157 (1331)
Q Consensus 1157 ~ 1157 (1331)
+
T Consensus 1298 a 1298 (1636)
T KOG3616|consen 1298 A 1298 (1636)
T ss_pred H
Confidence 4
No 340
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=94.50 E-value=0.056 Score=70.67 Aligned_cols=62 Identities=15% Similarity=0.127 Sum_probs=34.8
Q ss_pred HHHhhhhccccccchHHHHHHHHHHHhcccccccccccccccchhhhcccccchhhhhhhHHHHh
Q 000722 1020 EFLDLIDAADATGQANIAREALKRLAAAGSVKGALQGHELRGLALRLANHGELTRLSGLVTNLIS 1084 (1331)
Q Consensus 1020 ~w~~l~~~al~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~ll~~~~g~~~~l~~l~~~~~~ 1084 (1331)
-|..|+......|+.+.|.+.|++....+-. -...-|..|+--|+..|+.++..++.+.+.+
T Consensus 393 t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~---Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~ 454 (697)
T PLN03081 393 SWNALIAGYGNHGRGTKAVEMFERMIAEGVA---PNHVTFLAVLSACRYSGLSEQGWEIFQSMSE 454 (697)
T ss_pred eHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CCHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 4666666666677777777777665432200 0011244555556666666666666666554
No 341
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.41 E-value=0.79 Score=50.95 Aligned_cols=110 Identities=18% Similarity=0.176 Sum_probs=75.7
Q ss_pred cceEeecCCCceeeeeehhhheeehhhcCCCccchhhhhHhhhccccEEEeecCCCceEEEEeccCCCccccccccceee
Q 000722 181 VPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLK 260 (1331)
Q Consensus 181 g~~LasGs~DGtIrlWDl~t~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrVWDl~tg~~~~~~~~~~~l~ 260 (1331)
..+++.||..+.+.--|..+|+.+.... -...+.|-+ ---|++++.|+..|.+.+.+.++|...+.+....+++
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~i--lg~RiE~sa----~vvgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk 96 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAI--LGVRIECSA----IVVGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVK 96 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehh--hCceeeeee----EEECCEEEEEEccCcEEEEEecchhheeeeeehhhhc
Confidence 4577888888888888888877664432 222333322 0146789999999999999999997665432111111
Q ss_pred eccCcEEEEEechhccCCCcEEEeecCceeEeeeccchhhhcccC
Q 000722 261 AHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIK 305 (1331)
Q Consensus 261 gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~ 305 (1331)
+ .....+ ++.+|..|+.|++.+..|.++..++...+
T Consensus 97 -----~-~a~~d~---~~glIycgshd~~~yalD~~~~~cVyksk 132 (354)
T KOG4649|consen 97 -----V-RAQCDF---DGGLIYCGSHDGNFYALDPKTYGCVYKSK 132 (354)
T ss_pred -----c-ceEEcC---CCceEEEecCCCcEEEecccccceEEecc
Confidence 1 223344 67899999999999999999988877643
No 342
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=94.30 E-value=0.13 Score=62.13 Aligned_cols=200 Identities=15% Similarity=0.165 Sum_probs=95.4
Q ss_pred cccccCCCCCCCCceEEEEEeeccee-EeeeecccCCC---CC---ccccccccceeeehhhcccCCCc---ceEeecCC
Q 000722 120 TSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRD---IP---KQELDNKSLVCMEFLSRSAVGDV---PLVAFGSS 189 (1331)
Q Consensus 120 ~~~V~svafspdg~~lLasgs~d~iI-vwDl~t~~~~~---i~---~~~~h~~~V~~Vaf~P~s~Spdg---~~LasGs~ 189 (1331)
.+.|++++.|.-| |+++|..++.+ ++|++...... +. ........|+++.|.-.....|+ ..+++|++
T Consensus 86 ~g~vtal~~S~iG--Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn 163 (395)
T PF08596_consen 86 QGPVTALKNSDIG--FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTN 163 (395)
T ss_dssp S-SEEEEEE-BTS--EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEET
T ss_pred CCcEeEEecCCCc--EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEeC
Confidence 4567778887666 89999988866 66986433111 10 11223567889988543222333 57899999
Q ss_pred Cceeeeeehh--h-heeehhhc---CCCccchhhhhHh----------------hhcc--ccEEEeecCCCceEEEEecc
Q 000722 190 DGVIRVLSMI--S-WKLVRRYT---GGHKGSISCLMTF----------------MASS--GEALLVSGGSDGLLILWSAD 245 (1331)
Q Consensus 190 DGtIrlWDl~--t-~~~v~~~~---~gH~~~V~~vawf----------------~~sp--dg~lLaSgs~DgtIrVWDl~ 245 (1331)
.|.+.+|.+. . +.....+. ..|.+.|..+.-+ ...+ .-+-++....+..+|++...
T Consensus 164 ~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~ 243 (395)
T PF08596_consen 164 SGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKPP 243 (395)
T ss_dssp TSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT
T ss_pred CCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeCC
Confidence 9999999774 1 21111110 1233444433211 0000 01223334457789999887
Q ss_pred CCCccccccccceeeeccCcEEEEEechh--ccCCCcEEEeecCceeEeeeccchhhhcccCCCCcccccccccccCCCC
Q 000722 246 HGQDSRELVPKLSLKAHDGGVVAVELSRV--MGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRA 323 (1331)
Q Consensus 246 tg~~~~~~~~~~~l~gH~~~V~svafsp~--~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafs 323 (1331)
+.+..++. +. ..-....+.+-+. ...+..|++-..+|.|++|.+-..+.+....... ..+...+....++
T Consensus 244 ~~k~~~K~-----~~-~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~--~~d~~~~~~ssis 315 (395)
T PF08596_consen 244 KSKGAHKS-----FD-DPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPP--PLDSRRLSSSSIS 315 (395)
T ss_dssp ---EEEEE------S-S-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS-----HHHHTT-EE-
T ss_pred CCccccee-----ec-cccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCC--ccccccccccEEC
Confidence 76644321 11 1111223333210 0146688888899999999998877665543321 1233344566667
Q ss_pred CCCcee
Q 000722 324 PNLDIL 329 (1331)
Q Consensus 324 pdg~lL 329 (1331)
++|+++
T Consensus 316 ~~Gdi~ 321 (395)
T PF08596_consen 316 RNGDIF 321 (395)
T ss_dssp TTS-EE
T ss_pred CCCCEE
Confidence 888765
No 343
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=94.11 E-value=0.12 Score=62.19 Aligned_cols=204 Identities=15% Similarity=0.067 Sum_probs=119.9
Q ss_pred cccCCchhhhHHHhhhcc------ccchhHHHHHhhcccccccccCCCcc----cc-ee-----e--ee---ccccchHH
Q 000722 912 AAYGDSVSAVKWASRLGR------EHHDDLAQFMLGMGYATEALHLPGIS----KR-LE-----F--DL---AMQSNDLK 970 (1331)
Q Consensus 912 ~~~~~~~~a~~~~~~i~~------~~~~~~a~fl~~~g~~e~Al~~~~ds----~~-~~-----f--~l---a~~~g~l~ 970 (1331)
...|+++.|.+++.+.-+ ..+..++..+..+|-.++|++..... +. .. + .| .++.|+++
T Consensus 118 ~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 197 (389)
T PRK11788 118 LKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLD 197 (389)
T ss_pred HHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHH
Confidence 455888888887766321 12455666777777777776553221 00 00 1 11 24567777
Q ss_pred HHHHhhhhcccccccCCCCCCCChhhhcccccchhhHHHHHHHHHHHHHHHHhhhhccccccchHHHHHHHHHHHhcccc
Q 000722 971 RALQCLITMSNSRDIGQDHPGLDLNDILTLTTKKENIVEAVQGIVKFAKEFLDLIDAADATGQANIAREALKRLAAAGSV 1050 (1331)
Q Consensus 971 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~~~al~~g~~~~a~~~~~~~~~~~~~ 1050 (1331)
.|.+....+... + + .....|..||+.....|+++.|.+.|+++-.-. +
T Consensus 198 ~A~~~~~~al~~---~-p---------------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p 245 (389)
T PRK11788 198 AARALLKKALAA---D-P---------------------------QCVRASILLGDLALAQGDYAAAIEALERVEEQD-P 245 (389)
T ss_pred HHHHHHHHHHhH---C-c---------------------------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-h
Confidence 777776322111 0 0 011567789999999999999999999984221 1
Q ss_pred cccccccccccchhhhcccccchhhhhhhHHHHhhccChhhhhhh---h-hcCchHHHHHHhhhh-hhHHHHH----Hhh
Q 000722 1051 KGALQGHELRGLALRLANHGELTRLSGLVTNLISLGLGREAAFSA---A-ILGDNALMEKAWQDT-GMLAEAV----LHA 1121 (1331)
Q Consensus 1051 ~~~~~~~~~~~l~ll~~~~g~~~~l~~l~~~~~~~~~~~~~af~~---~-~lgd~~~~~~~l~~~-~~~~~A~----~~A 1121 (1331)
. ....-+..|..+|+..|+.+...+.++.+.+.......+... + ..|+.++++++|.+. ...|... +++
T Consensus 246 ~--~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~ 323 (389)
T PRK11788 246 E--YLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLD 323 (389)
T ss_pred h--hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHH
Confidence 0 000113567788999999999999888877754331222221 1 568888888888653 2222211 122
Q ss_pred h---ccCCCcHHHHHHHHHHHHhhhccCCCC
Q 000722 1122 H---AHGRPSLKNLVEAWNKMLQKEVDHTPT 1149 (1331)
Q Consensus 1122 ~---~~~~~~~~~~~~~w~~~l~~~~~~~~~ 1149 (1331)
. .++.....+.++.+++++.+.....|.
T Consensus 324 ~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 324 YHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 1 222335567777778888777766665
No 344
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=94.01 E-value=0.072 Score=61.32 Aligned_cols=170 Identities=18% Similarity=0.147 Sum_probs=74.1
Q ss_pred eeecccCCchhhhHHHhh---hccc---cchhHHHHHhhcccccccccCCCcc----ccee-----eeeccccchHHHHH
Q 000722 909 RCLAAYGDSVSAVKWASR---LGRE---HHDDLAQFMLGMGYATEALHLPGIS----KRLE-----FDLAMQSNDLKRAL 973 (1331)
Q Consensus 909 ~~~~~~~~~~~a~~~~~~---i~~~---~~~~~a~fl~~~g~~e~Al~~~~ds----~~~~-----f~la~~~g~l~~a~ 973 (1331)
.++...||++.|.+...+ .++. ...+++.+ ...|.+++|+.+.... ++.. .+++.+.++.+.+.
T Consensus 52 ~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 130 (280)
T PF13429_consen 52 DLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAE 130 (280)
T ss_dssp -------------------------------------------------------------------H-HHHTT-HHHHH
T ss_pred cccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccchhhHHHHHHHHHhHHHHHH
Confidence 456667888888887666 2222 35667777 5778888888776441 1111 23445566666666
Q ss_pred HhhhhcccccccCCCCCCCChhhhcccccchhhHHHHHHHHHHHHHHHHhhhhccccccchHHHHHHHHHHHhccccccc
Q 000722 974 QCLITMSNSRDIGQDHPGLDLNDILTLTTKKENIVEAVQGIVKFAKEFLDLIDAADATGQANIAREALKRLAAAGSVKGA 1053 (1331)
Q Consensus 974 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~~~al~~g~~~~a~~~~~~~~~~~~~~~~ 1053 (1331)
++...+...... .....-|..+|......|+.+.|+++|+++-... |...
T Consensus 131 ~~l~~~~~~~~~-----------------------------~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-P~~~ 180 (280)
T PF13429_consen 131 ELLEKLEELPAA-----------------------------PDSARFWLALAEIYEQLGDPDKALRDYRKALELD-PDDP 180 (280)
T ss_dssp HHHHHHHH-T--------------------------------T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH--TT-H
T ss_pred HHHHHHHhccCC-----------------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCH
Confidence 665332211110 0112689999999999999999999999984322 1100
Q ss_pred ccccccccchhhhcccccchhhhhhhHHHHhhccC--h-hhhhhhh--hcCchHHHHHHhhhhh
Q 000722 1054 LQGHELRGLALRLANHGELTRLSGLVTNLISLGLG--R-EAAFSAA--ILGDNALMEKAWQDTG 1112 (1331)
Q Consensus 1054 ~~~~~~~~l~ll~~~~g~~~~l~~l~~~~~~~~~~--~-~~af~~~--~lgd~~~~~~~l~~~~ 1112 (1331)
- -...|+.++...|+.++++++++...+.... . -.+|..+ .+|+.++++..|.+.-
T Consensus 181 ~---~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~ 241 (280)
T PF13429_consen 181 D---ARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKAL 241 (280)
T ss_dssp H---HHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHH
T ss_pred H---HHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccc
Confidence 0 1346777888999999988888877776411 0 2334422 8999999999988654
No 345
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=94.00 E-value=0.2 Score=64.81 Aligned_cols=99 Identities=15% Similarity=0.154 Sum_probs=68.4
Q ss_pred EEEEEeecceeEeeeecccCCCCCcccc----ccccceeeehhhcccCCCcceEeecCCCceeeeeehhhheeehhhcCC
Q 000722 135 FLVICCVNKAIFLDLVTMRGRDIPKQEL----DNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGG 210 (1331)
Q Consensus 135 lLasgs~d~iIvwDl~t~~~~~i~~~~~----h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~~~v~~~~~g 210 (1331)
.|++-+.+.+.+||.+-...+.+ .... ......|++- +.+| +||+|+.+|.||+||- .++..++..++
T Consensus 545 tflGls~n~lfriDpR~~~~k~v-~~~~k~Y~~~~~Fs~~aT-----t~~G-~iavgs~~G~IRLyd~-~g~~AKT~lp~ 616 (794)
T PF08553_consen 545 TFLGLSDNSLFRIDPRLSGNKLV-DSQSKQYSSKNNFSCFAT-----TEDG-YIAVGSNKGDIRLYDR-LGKRAKTALPG 616 (794)
T ss_pred eEEEECCCceEEeccCCCCCcee-eccccccccCCCceEEEe-----cCCc-eEEEEeCCCcEEeecc-cchhhhhcCCC
Confidence 67777888888998875321111 1111 2345667766 4444 7999999999999994 44445555557
Q ss_pred CccchhhhhHhhhccccEEEeecCCCceEEEEecc
Q 000722 211 HKGSISCLMTFMASSGEALLVSGGSDGLLILWSAD 245 (1331)
Q Consensus 211 H~~~V~~vawf~~spdg~lLaSgs~DgtIrVWDl~ 245 (1331)
-..+|..|. .+.||++++..+ +..+.+++..
T Consensus 617 lG~pI~~iD---vt~DGkwilaTc-~tyLlLi~t~ 647 (794)
T PF08553_consen 617 LGDPIIGID---VTADGKWILATC-KTYLLLIDTL 647 (794)
T ss_pred CCCCeeEEE---ecCCCcEEEEee-cceEEEEEEe
Confidence 889999998 899999987654 5567777753
No 346
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=93.84 E-value=30 Score=45.47 Aligned_cols=63 Identities=19% Similarity=0.154 Sum_probs=38.2
Q ss_pred ccEEEeecCCCceEEEEeccCCCccccccccceeeeccCcEEEEEechhccCCC---cEEEeecCceeEee
Q 000722 226 GEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSP---QLITIGADKTLAIW 293 (1331)
Q Consensus 226 dg~lLaSgs~DgtIrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~---~LaSgs~Dg~IrIW 293 (1331)
+...++.++.++.+...++..+. +++. .-...+..|.|+.++|..++.. +++.|..+..+.+-
T Consensus 498 n~sqVvvA~~~~~l~y~~i~~~~-l~e~----~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l 563 (1096)
T KOG1897|consen 498 NASQVVVAGGGLALFYLEIEDGG-LREV----SHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMIL 563 (1096)
T ss_pred cceEEEEecCccEEEEEEeeccc-eeee----eeheecceeEEEecccCCCCCCcceEEEEEeecceEEEE
Confidence 44466666777777766766554 2210 0122345699999998533333 78888877666554
No 347
>PLN03218 maturation of RBCL 1; Provisional
Probab=93.81 E-value=0.069 Score=72.11 Aligned_cols=170 Identities=15% Similarity=0.037 Sum_probs=78.8
Q ss_pred ccCCchhhhHHHhhhcc-------ccchhHHHHHhhcccccccccCCCcccc-----------eeeeeccccchHHHHHH
Q 000722 913 AYGDSVSAVKWASRLGR-------EHHDDLAQFMLGMGYATEALHLPGISKR-----------LEFDLAMQSNDLKRALQ 974 (1331)
Q Consensus 913 ~~~~~~~a~~~~~~i~~-------~~~~~~a~fl~~~g~~e~Al~~~~ds~~-----------~~f~la~~~g~l~~a~~ 974 (1331)
-.|++++|.++...+.+ ..++.++.-+.+.|..++|+.+..+-.. .-.+.+.+.|+++.|++
T Consensus 591 k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~ 670 (1060)
T PLN03218 591 NAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFE 670 (1060)
T ss_pred HCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHH
Confidence 45777777776665322 2356666777777777777776543111 11234556677777777
Q ss_pred hhhhcccccccCCCCCCCChhhhcccccchhhHHHHHHHH--------HHHHHHHHhhhhccccccchHHHHHHHHHHHh
Q 000722 975 CLITMSNSRDIGQDHPGLDLNDILTLTTKKENIVEAVQGI--------VKFAKEFLDLIDAADATGQANIAREALKRLAA 1046 (1331)
Q Consensus 975 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~w~~l~~~al~~g~~~~a~~~~~~~~~ 1046 (1331)
+...|....-.... .=.+-|+..=.+..+..++..=+ ......|..|.+.....|+++.|.+.|++.+.
T Consensus 671 l~~eM~k~G~~pd~---~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~ 747 (1060)
T PLN03218 671 ILQDARKQGIKLGT---VSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKR 747 (1060)
T ss_pred HHHHHHHcCCCCCH---HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 77554332100000 00011111111111111111111 11123455555555566666666666655533
Q ss_pred cccccccccccccccchhhhcccccchhhhhhhHHHHhhccC
Q 000722 1047 AGSVKGALQGHELRGLALRLANHGELTRLSGLVTNLISLGLG 1088 (1331)
Q Consensus 1047 ~~~~~~~~~~~~~~~l~ll~~~~g~~~~l~~l~~~~~~~~~~ 1088 (1331)
.+-. -...-|..|+..|+..|+.+...++.+.+.+.|-.
T Consensus 748 ~Gi~---Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~ 786 (1060)
T PLN03218 748 LGLC---PNTITYSILLVASERKDDADVGLDLLSQAKEDGIK 786 (1060)
T ss_pred cCCC---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC
Confidence 2200 00112445555555566666666665555555543
No 348
>PRK02888 nitrous-oxide reductase; Validated
Probab=93.54 E-value=0.23 Score=62.15 Aligned_cols=189 Identities=11% Similarity=0.009 Sum_probs=104.8
Q ss_pred eecCCceeEe-ecCCCceeeeccccceEEeeeccCCcccchhhhhhhhhhcccccc-cCCCCcccccCCceeEEeeecch
Q 000722 19 LHPTHPWLVT-ADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELE-HKGKPTEAMRGGSVKQVNFYDDD 96 (1331)
Q Consensus 19 fSPdg~~LaS-gs~DGtV~VWD~~tg~~i~s~~~~~~~~i~~vspdg~~Lasgs~d-~~g~~l~~l~gg~V~sVaf~Dgt 96 (1331)
++|||+.+.. .-..+.+.+.|.++.+...++..+........+++++.+.+.+.+ ..+..+..+..+. .| .
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e------~d-~ 272 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAE------RD-W 272 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeecccc------Cc-e
Confidence 5667776543 334568888898888888887765433333334566665444311 1111111111000 00 1
Q ss_pred hhHHHHhhhccccccCCcccccccccccCCCCCCCCceEEEEEeecceeEeeeecc--cCCCCCccccccccceeeehhh
Q 000722 97 VRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFLDLVTM--RGRDIPKQELDNKSLVCMEFLS 174 (1331)
Q Consensus 97 IrvWdl~tg~~l~~~~~~~~~~~~~~V~svafspdg~~lLasgs~d~iIvwDl~t~--~~~~i~~~~~h~~~V~~Vaf~P 174 (1331)
+.++++... -.+.++|+..++ ..+.+.++|..+. ....+.....-......+.+
T Consensus 273 ~vvfni~~i--------------------ea~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~v-- 328 (635)
T PRK02888 273 VVVFNIARI--------------------EEAVKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNT-- 328 (635)
T ss_pred EEEEchHHH--------------------HHhhhCCCEEEE--CCCEEEEEECCccccCCcceEEEEECCCCccceEE--
Confidence 111111110 123557774443 3445668887761 01122233344677888999
Q ss_pred cccCCCcceEeecC-CCceeeeeehhhhee------------ehhhcCCCccchhhhhHhhhccccEEEeecCCCceEEE
Q 000722 175 RSAVGDVPLVAFGS-SDGVIRVLSMISWKL------------VRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLIL 241 (1331)
Q Consensus 175 ~s~Spdg~~LasGs-~DGtIrlWDl~t~~~------------v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrV 241 (1331)
+|||+++++++ .+.+|.|+|+.+.+. +..... -.++. ..+ |..+|+...|-..|..|..
T Consensus 329 ---SPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev-GlGPL-HTa---FDg~G~aytslf~dsqv~k 400 (635)
T PRK02888 329 ---SPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL-GLGPL-HTA---FDGRGNAYTTLFLDSQIVK 400 (635)
T ss_pred ---CCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc-CCCcc-eEE---ECCCCCEEEeEeecceeEE
Confidence 78999876655 689999999987542 222221 11221 222 6788888888899999999
Q ss_pred EeccC
Q 000722 242 WSADH 246 (1331)
Q Consensus 242 WDl~t 246 (1331)
||+..
T Consensus 401 wn~~~ 405 (635)
T PRK02888 401 WNIEA 405 (635)
T ss_pred EehHH
Confidence 99876
No 349
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=93.36 E-value=0.19 Score=56.95 Aligned_cols=203 Identities=10% Similarity=0.022 Sum_probs=101.7
Q ss_pred cccCCCCCCCCceEEEEEeecceeE-eeeecccCCCCCccccc-cccceeeehhhcccCCCcceEeecCCCceeeeeehh
Q 000722 122 GFASPPPSTKGRHFLVICCVNKAIF-LDLVTMRGRDIPKQELD-NKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMI 199 (1331)
Q Consensus 122 ~V~svafspdg~~lLasgs~d~iIv-wDl~t~~~~~i~~~~~h-~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~ 199 (1331)
.+..+.|+|+.+.++++......++ ++.. ++. +...... .+..-.|++ ..++.++++--.++.+.++++.
T Consensus 23 e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~v--lr~i~l~g~~D~EgI~y-----~g~~~~vl~~Er~~~L~~~~~~ 94 (248)
T PF06977_consen 23 ELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKV--LRRIPLDGFGDYEGITY-----LGNGRYVLSEERDQRLYIFTID 94 (248)
T ss_dssp -EEEEEEETTTTEEEEEETTTTEEEEEETT---E--EEEEE-SS-SSEEEEEE------STTEEEEEETTTTEEEEEEE-
T ss_pred CccccEEcCCCCeEEEEECCCCEEEEEcCC-CCE--EEEEeCCCCCCceeEEE-----ECCCEEEEEEcCCCcEEEEEEe
Confidence 3677889998776777777776663 3643 332 2222222 245667888 4567777766678999998884
Q ss_pred hhe------eehhh----cCCCccchhhhhHhhhccccEEEeecCCCceEEEEeccC---CCccccc--cccceeeeccC
Q 000722 200 SWK------LVRRY----TGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADH---GQDSREL--VPKLSLKAHDG 264 (1331)
Q Consensus 200 t~~------~v~~~----~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrVWDl~t---g~~~~~~--~~~~~l~gH~~ 264 (1331)
... ....+ ...++..+-.++ +.+.++.|+.+-...-.++|.+.. ...+... ........+..
T Consensus 95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla---~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (248)
T PF06977_consen 95 DDTTSLDRADVQKISLGFPNKGNKGFEGLA---YDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVR 171 (248)
T ss_dssp ---TT--EEEEEEEE---S---SS--EEEE---EETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS
T ss_pred ccccccchhhceEEecccccCCCcceEEEE---EcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceec
Confidence 321 11111 113556677887 466555555555555566666654 1111000 00000112334
Q ss_pred cEEEEEechhccCCCcEEEeecCceeEeeeccchhhhcccCCCCcccccc---cccccCCCCCCCceeeeeecceee
Q 000722 265 GVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHS---VASWCHPRAPNLDILTCVKDSHIW 338 (1331)
Q Consensus 265 ~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~---~~V~svafspdg~lLa~s~Dg~IW 338 (1331)
.+.+++++| ..+++++....++.|.++| .+|+.+..+.......+-. ..--.++|.++|.+...++-+.+|
T Consensus 172 d~S~l~~~p--~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsEpNlfy 245 (248)
T PF06977_consen 172 DLSGLSYDP--RTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSEPNLFY 245 (248)
T ss_dssp ---EEEEET--TTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEETTTEEE
T ss_pred cccceEEcC--CCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcCCceEE
Confidence 588999999 4778888888899999999 5566554432221111111 122367777777766666655444
No 350
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=93.05 E-value=0.13 Score=64.83 Aligned_cols=131 Identities=16% Similarity=0.189 Sum_probs=83.3
Q ss_pred cccceeeehhhcccCCCcceEeecCCCceeeeeehhhheeehhhcCCCccchhhhhHh--------hhccccEEEeecCC
Q 000722 164 NKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTF--------MASSGEALLVSGGS 235 (1331)
Q Consensus 164 ~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~~~v~~~~~gH~~~V~~vawf--------~~spdg~lLaSgs~ 235 (1331)
..++.-|.|.|. -++.-++..+-.++.|++.++.+... ..+. +|...+..+++| ..+|||..|+.++.
T Consensus 180 gs~~~~V~wcp~--~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~r-sHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~ 255 (1283)
T KOG1916|consen 180 GSDPQLVSWCPI--AVNKVYICYGLKGGEIRLLNINRALR-SLFR-SHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAIS 255 (1283)
T ss_pred CCCcceeeeccc--ccccceeeeccCCCceeEeeechHHH-HHHH-hcCCCcccHHHHhhchhhheeeCCCCcEEEEeec
Confidence 445566777663 34557788888999999988765333 4555 699999998855 35899999999999
Q ss_pred CceEEEEecc-CCCccccccccceeeeccCc--EEEEEechhc------cCCCcEEEeec-CceeEeeeccchhhh
Q 000722 236 DGLLILWSAD-HGQDSRELVPKLSLKAHDGG--VVAVELSRVM------GGSPQLITIGA-DKTLAIWDTVSFKEL 301 (1331)
Q Consensus 236 DgtIrVWDl~-tg~~~~~~~~~~~l~gH~~~--V~svafsp~~------~dg~~LaSgs~-Dg~IrIWDl~t~~~l 301 (1331)
||.++.|.+. +|+.... .....+.|++. |+++ |+... +--.+++++++ .+.+++|....++|+
T Consensus 256 dG~v~f~Qiyi~g~~~~r--clhewkphd~~p~vC~l-c~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 256 DGSVGFYQIYITGKIVHR--CLHEWKPHDKHPRVCWL-CHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred CCccceeeeeeeccccHh--hhhccCCCCCCCceeee-eccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 9999999764 2221110 11223445522 3333 33200 00124555554 667999998888876
No 351
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=92.89 E-value=0.29 Score=62.51 Aligned_cols=84 Identities=23% Similarity=0.285 Sum_probs=57.0
Q ss_pred ecccCCchhhhHHHhh-hccccchhHHHHHhhcccccccccCCCcccceeeeeccccchHHHHHHhhhhcccccccCCCC
Q 000722 911 LAAYGDSVSAVKWASR-LGREHHDDLAQFMLGMGYATEALHLPGISKRLEFDLAMQSNDLKRALQCLITMSNSRDIGQDH 989 (1331)
Q Consensus 911 ~~~~~~~~~a~~~~~~-i~~~~~~~~a~fl~~~g~~e~Al~~~~ds~~~~f~la~~~g~l~~a~~~~~~~~~~~~~~~~~ 989 (1331)
+.++||+++|.+++.. |-+.....+|-|..+. +.+ |.||++.|+.+....+ --+..+.
T Consensus 149 lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~--------IyE-----------qrGd~eK~l~~~llAA-HL~p~d~- 207 (895)
T KOG2076|consen 149 LFARGDLEEAEEILMEVIKQDPRNPIAYYTLGE--------IYE-----------QRGDIEKALNFWLLAA-HLNPKDY- 207 (895)
T ss_pred HHHhCCHHHHHHHHHHHHHhCccchhhHHHHHH--------HHH-----------HcccHHHHHHHHHHHH-hcCCCCh-
Confidence 4577999999998887 5666655555554443 222 2556666666541111 0111112
Q ss_pred CCCChhhhcccccchhhHHHHHHHHHHHHHHHHhhhhccccccchHHHHHHHHHH
Q 000722 990 PGLDLNDILTLTTKKENIVEAVQGIVKFAKEFLDLIDAADATGQANIAREALKRL 1044 (1331)
Q Consensus 990 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~~~al~~g~~~~a~~~~~~~ 1044 (1331)
..|++|++.+..+|+++.|.-||-|+
T Consensus 208 -----------------------------e~W~~ladls~~~~~i~qA~~cy~rA 233 (895)
T KOG2076|consen 208 -----------------------------ELWKRLADLSEQLGNINQARYCYSRA 233 (895)
T ss_pred -----------------------------HHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 79999999999999999999999998
No 352
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=92.70 E-value=0.16 Score=55.71 Aligned_cols=102 Identities=19% Similarity=0.047 Sum_probs=75.6
Q ss_pred HHHHhhhhccccccchHHHHHHHHHHHhcccccccccccccccchhhhcccccchhhhhhhHHHHhhccChhhhhhhh-h
Q 000722 1019 KEFLDLIDAADATGQANIAREALKRLAAAGSVKGALQGHELRGLALRLANHGELTRLSGLVTNLISLGLGREAAFSAA-I 1097 (1331)
Q Consensus 1019 ~~w~~l~~~al~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~ll~~~~g~~~~l~~l~~~~~~~~~~~~~af~~~-~ 1097 (1331)
.-|.-+|=-|+++|+++-|++.|+|+ |+....+-..+.+|+..-.++|+. +-|. +
T Consensus 140 ~t~eN~G~Cal~~gq~~~A~~~l~ra--------------------L~~dp~~~~~~l~~a~~~~~~~~y----~~Ar~~ 195 (250)
T COG3063 140 DTLENLGLCALKAGQFDQAEEYLKRA--------------------LELDPQFPPALLELARLHYKAGDY----APARLY 195 (250)
T ss_pred hhhhhhHHHHhhcCCchhHHHHHHHH--------------------HHhCcCCChHHHHHHHHHHhcccc----hHHHHH
Confidence 56777777799999999999999999 555677778888999999999987 2232 3
Q ss_pred cCchHHHHHHhhhhhhHHHHHHhhhccCCCcHHHHHHHHHHHHhhhccCCCC
Q 000722 1098 LGDNALMEKAWQDTGMLAEAVLHAHAHGRPSLKNLVEAWNKMLQKEVDHTPT 1149 (1331)
Q Consensus 1098 lgd~~~~~~~l~~~~~~~~A~~~A~~~~~~~~~~~~~~w~~~l~~~~~~~~~ 1149 (1331)
+-++..+.. .....+=+.+.+||.-|. ...+.+|...|++.-..++.
T Consensus 196 ~~~~~~~~~--~~A~sL~L~iriak~~gd---~~~a~~Y~~qL~r~fP~s~e 242 (250)
T COG3063 196 LERYQQRGG--AQAESLLLGIRIAKRLGD---RAAAQRYQAQLQRLFPYSEE 242 (250)
T ss_pred HHHHHhccc--ccHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHhCCCcHH
Confidence 333333333 334445577889998883 56788999999988766654
No 353
>PLN03218 maturation of RBCL 1; Provisional
Probab=92.38 E-value=0.34 Score=65.67 Aligned_cols=30 Identities=17% Similarity=0.284 Sum_probs=25.8
Q ss_pred HHHHhhhhccccccchHHHHHHHHHHHhcc
Q 000722 1019 KEFLDLIDAADATGQANIAREALKRLAAAG 1048 (1331)
Q Consensus 1019 ~~w~~l~~~al~~g~~~~a~~~~~~~~~~~ 1048 (1331)
..|.-|...+.+.|+++.|++.|.+....+
T Consensus 755 ~Ty~sLL~a~~k~G~le~A~~l~~~M~k~G 784 (1060)
T PLN03218 755 ITYSILLVASERKDDADVGLDLLSQAKEDG 784 (1060)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 468888999999999999999999996443
No 354
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=92.31 E-value=0.55 Score=57.19 Aligned_cols=221 Identities=13% Similarity=0.065 Sum_probs=129.6
Q ss_pred eecccCCchhhhHHHhh---hccccc-h---hHHHHHhhcccccccccC----CCcccc------eeeeeccccchHHHH
Q 000722 910 CLAAYGDSVSAVKWASR---LGREHH-D---DLAQFMLGMGYATEALHL----PGISKR------LEFDLAMQSNDLKRA 972 (1331)
Q Consensus 910 ~~~~~~~~~~a~~~~~~---i~~~~~-~---~~a~fl~~~g~~e~Al~~----~~ds~~------~~f~la~~~g~l~~a 972 (1331)
.+..+|+++.|.+++.. ..++.. . ..+++...+|-++.|++. ....|+ ...++.++.|+.+.|
T Consensus 127 aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a 206 (398)
T PRK10747 127 AAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSL 206 (398)
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHH
Confidence 34677999999888876 233321 1 226677788888888873 223244 346777888999999
Q ss_pred HHhhhhcccccccCCCCCCCChhhhc-----ccccchhhHHHHHHHHHHHHHHHHhh--------------hhccccccc
Q 000722 973 LQCLITMSNSRDIGQDHPGLDLNDIL-----TLTTKKENIVEAVQGIVKFAKEFLDL--------------IDAADATGQ 1033 (1331)
Q Consensus 973 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~w~~l--------------~~~al~~g~ 1033 (1331)
++++..+.+.+.++.. ++.++. .+... .....+...+.+.|++| ++.....|+
T Consensus 207 ~~~l~~l~k~~~~~~~----~~~~l~~~a~~~l~~~----~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~ 278 (398)
T PRK10747 207 LDILPSMAKAHVGDEE----HRAMLEQQAWIGLMDQ----AMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDD 278 (398)
T ss_pred HHHHHHHHHcCCCCHH----HHHHHHHHHHHHHHHH----HHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCC
Confidence 9888666555333211 122111 11110 00111222333455544 888899999
Q ss_pred hHHHHHHHHHHHhcccccccccccccccchhhhcc--cccchhhhhhhHHHHhhccChhhh--hh----hhhcCchHHHH
Q 000722 1034 ANIAREALKRLAAAGSVKGALQGHELRGLALRLAN--HGELTRLSGLVTNLISLGLGREAA--FS----AAILGDNALME 1105 (1331)
Q Consensus 1034 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~ll~~~--~g~~~~l~~l~~~~~~~~~~~~~a--f~----~~~lgd~~~~~ 1105 (1331)
.+.|++.+.++-... .-..|+++|.. .|+.++..+.++...++.-. +.. +. +.-.|+.+++.
T Consensus 279 ~~~A~~~L~~~l~~~---------~~~~l~~l~~~l~~~~~~~al~~~e~~lk~~P~-~~~l~l~lgrl~~~~~~~~~A~ 348 (398)
T PRK10747 279 HDTAQQIILDGLKRQ---------YDERLVLLIPRLKTNNPEQLEKVLRQQIKQHGD-TPLLWSTLGQLLMKHGEWQEAS 348 (398)
T ss_pred HHHHHHHHHHHHhcC---------CCHHHHHHHhhccCCChHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHH
Confidence 999999998884322 33456666654 48877777776665555433 322 22 12778899988
Q ss_pred HHhhhhhhH----HHHHHhhhccCCC-cHHHHHHHHHHHHhhhccCCC
Q 000722 1106 KAWQDTGML----AEAVLHAHAHGRP-SLKNLVEAWNKMLQKEVDHTP 1148 (1331)
Q Consensus 1106 ~~l~~~~~~----~~A~~~A~~~~~~-~~~~~~~~w~~~l~~~~~~~~ 1148 (1331)
+.|.+.=.. +-..++|+.|-.. +..+..+.|++.|.......|
T Consensus 349 ~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~ 396 (398)
T PRK10747 349 LAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLTLQNNP 396 (398)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccCC
Confidence 888766222 2224555555432 346677788887765544433
No 355
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=92.23 E-value=0.8 Score=57.35 Aligned_cols=105 Identities=14% Similarity=0.096 Sum_probs=66.4
Q ss_pred eEeecCCCceeeeeehhhheeehhhcCCCccchhhhhHhhhccccEEEee-----------------cCCCceEEEEecc
Q 000722 183 LVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVS-----------------GGSDGLLILWSAD 245 (1331)
Q Consensus 183 ~LasGs~DGtIrlWDl~t~~~v~~~~~gH~~~V~~vawf~~spdg~lLaS-----------------gs~DgtIrVWDl~ 245 (1331)
.++.++.+|.+..+|.++|+.+-...... ..+. .++ +..++. ...+|.+.-.|..
T Consensus 303 ~V~~g~~~G~l~ald~~tG~~~W~~~~~~----~~~~---~~~-~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~ 374 (488)
T cd00216 303 AIVHAPKNGFFYVLDRTTGKLISARPEVE----QPMA---YDP-GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPK 374 (488)
T ss_pred EEEEECCCceEEEEECCCCcEeeEeEeec----cccc---cCC-ceEEEccccccccCcccccCCCCCCCceEEEEEeCC
Confidence 67888899999999999998876553110 1111 223 222221 2246888889999
Q ss_pred CCCccccccccceeeecc------CcE--EEEEechhccCCCcEEEeecCceeEeeeccchhhhccc
Q 000722 246 HGQDSRELVPKLSLKAHD------GGV--VAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRI 304 (1331)
Q Consensus 246 tg~~~~~~~~~~~l~gH~------~~V--~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~ 304 (1331)
+|+.+++... ..+. ... ..+.. .+.+|+.++.||.|+.+|..+|+.+.+.
T Consensus 375 tG~~~W~~~~----~~~~~~~~~g~~~~~~~~~~-----~g~~v~~g~~dG~l~ald~~tG~~lW~~ 432 (488)
T cd00216 375 TGKVVWEKRE----GTIRDSWNIGFPHWGGSLAT-----AGNLVFAGAADGYFRAFDATTGKELWKF 432 (488)
T ss_pred CCcEeeEeeC----CccccccccCCcccCcceEe-----cCCeEEEECCCCeEEEEECCCCceeeEE
Confidence 9987665211 1110 011 11222 3468888899999999999999987663
No 356
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=91.99 E-value=0.25 Score=54.17 Aligned_cols=66 Identities=18% Similarity=0.157 Sum_probs=44.3
Q ss_pred cceEeecCCCceeeeeehhh-heeehhhcCCCccchhhhhHhhhccccEEEeecCCCceEEEEeccCCCc
Q 000722 181 VPLVAFGSSDGVIRVLSMIS-WKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQD 249 (1331)
Q Consensus 181 g~~LasGs~DGtIrlWDl~t-~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrVWDl~tg~~ 249 (1331)
+..+++|+.+|.|.+|++.. +.....+. .-...|.|+- +.-.++.+..+++.||.||.|++.-.+.
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~-s~~e~i~~~I--p~~~~~~~~c~~~~dg~ir~~n~~p~k~ 136 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVC-SGEESIDLGI--PNGRDSSLGCVGAQDGRIRACNIKPNKV 136 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhh-cccccceecc--ccccccceeEEeccCCceeeeccccCce
Confidence 56799999999999999873 22222222 2223333331 2445566899999999999999876654
No 357
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.35 E-value=0.36 Score=62.55 Aligned_cols=106 Identities=18% Similarity=0.292 Sum_probs=73.5
Q ss_pred CcceEeecCCCceeeeeehhhheeehhhcCCCccchhhhhHhhhccccEEEeecCCCceEEEEeccCCCcccccccccee
Q 000722 180 DVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSL 259 (1331)
Q Consensus 180 dg~~LasGs~DGtIrlWDl~t~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrVWDl~tg~~~~~~~~~~~l 259 (1331)
.+.+++.|++.|.|-..|+...-........-.++|++++ |+.+|.+++.|-.+|.|.+||+..++..+. +
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsva---fn~dg~~l~~G~~~G~V~v~D~~~~k~l~~------i 168 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVA---FNQDGSLLLAGLGDGHVTVWDMHRAKILKV------I 168 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeE---ecCCCceeccccCCCcEEEEEccCCcceee------e
Confidence 4667999999999999998753111111123468999998 899999999999999999999999876554 4
Q ss_pred eeccCcEEEEEechhccCCCcEEEeecCceeEeeecc
Q 000722 260 KAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTV 296 (1331)
Q Consensus 260 ~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~ 296 (1331)
..|..+++++-++-...++..++++..-|. +|.+.
T Consensus 169 ~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 169 TEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKLV 203 (1206)
T ss_pred eecCCccceEEEEEEeCCCcEEEEccCCCc--eEEEE
Confidence 445554444443322124456777766665 67654
No 358
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=91.31 E-value=0.23 Score=61.04 Aligned_cols=95 Identities=16% Similarity=0.212 Sum_probs=74.0
Q ss_pred cccceeeehhhcccCCCcceEeecCCCceeeeeehhhheeehhhcCCCccchh-hhhHhhhccccEEEeecCCCceEEEE
Q 000722 164 NKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSIS-CLMTFMASSGEALLVSGGSDGLLILW 242 (1331)
Q Consensus 164 ~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~~~v~~~~~gH~~~V~-~vawf~~spdg~lLaSgs~DgtIrVW 242 (1331)
...+.-+.| +|.-.++|.+..+|.|.+..+. ++.+.++. -|...++ +++| .|||++|+.|-.||+|++.
T Consensus 20 ~~~i~~~ew-----nP~~dLiA~~t~~gelli~R~n-~qRlwtip-~p~~~v~~sL~W---~~DGkllaVg~kdG~I~L~ 89 (665)
T KOG4640|consen 20 PINIKRIEW-----NPKMDLIATRTEKGELLIHRLN-WQRLWTIP-IPGENVTASLCW---RPDGKLLAVGFKDGTIRLH 89 (665)
T ss_pred ccceEEEEE-----cCccchhheeccCCcEEEEEec-cceeEecc-CCCCccceeeee---cCCCCEEEEEecCCeEEEE
Confidence 345667889 6788899999999999999887 77777775 5777777 9986 7899999999999999999
Q ss_pred eccCCCccccccccceeeeccCcEEEEEech
Q 000722 243 SADHGQDSRELVPKLSLKAHDGGVVAVELSR 273 (1331)
Q Consensus 243 Dl~tg~~~~~~~~~~~l~gH~~~V~svafsp 273 (1331)
|+.++..+... .......|.++.|.+
T Consensus 90 Dve~~~~l~~~-----~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 90 DVEKGGRLVSF-----LFSVETDISKGIWDR 115 (665)
T ss_pred EccCCCceecc-----ccccccchheeeccc
Confidence 99998765431 122344566777764
No 359
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=91.17 E-value=0.65 Score=60.86 Aligned_cols=65 Identities=11% Similarity=0.089 Sum_probs=38.4
Q ss_pred HHHHhhhhccccccchHHHHHHHHHHHhcccccccccccccccchhhhcccccchhhhhhhHHHHhhc
Q 000722 1019 KEFLDLIDAADATGQANIAREALKRLAAAGSVKGALQGHELRGLALRLANHGELTRLSGLVTNLISLG 1086 (1331)
Q Consensus 1019 ~~w~~l~~~al~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~ll~~~~g~~~~l~~l~~~~~~~~ 1086 (1331)
.-|.-|.......|+++.|.+.|++....+-. ....-|..|+..|+..|+.+...++...+.+.|
T Consensus 291 vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~---pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g 355 (697)
T PLN03081 291 VAWNSMLAGYALHGYSEEALCLYYEMRDSGVS---IDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTG 355 (697)
T ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHHHhccchHHHHHHHHHHHHhC
Confidence 45777777777777777777777666432210 111234555666666666666666666666655
No 360
>PLN03077 Protein ECB2; Provisional
Probab=90.82 E-value=0.48 Score=63.62 Aligned_cols=133 Identities=11% Similarity=0.025 Sum_probs=67.0
Q ss_pred cCCchhhhHHHhhhcc---ccchhHHHHHhhcccccccccCCCcccce-------ee----eeccccchHHHHHHhhhhc
Q 000722 914 YGDSVSAVKWASRLGR---EHHDDLAQFMLGMGYATEALHLPGISKRL-------EF----DLAMQSNDLKRALQCLITM 979 (1331)
Q Consensus 914 ~~~~~~a~~~~~~i~~---~~~~~~a~fl~~~g~~e~Al~~~~ds~~~-------~f----~la~~~g~l~~a~~~~~~~ 979 (1331)
.|++++|.+++..+.+ ..++.++.-+.+.|.+++|+++...-... -| ..+.++|+++.|.++..++
T Consensus 336 ~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~ 415 (857)
T PLN03077 336 LGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELA 415 (857)
T ss_pred cCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHH
Confidence 4777777777666432 22566666666777777777665421000 01 1233456666666665333
Q ss_pred ccccccCCCCCCCChhhhcccccchhhHHHHHHHHHHHHHHHHhhhhccccccchHHHHHHHHHHHhccccccccccccc
Q 000722 980 SNSRDIGQDHPGLDLNDILTLTTKKENIVEAVQGIVKFAKEFLDLIDAADATGQANIAREALKRLAAAGSVKGALQGHEL 1059 (1331)
Q Consensus 980 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~~~al~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 1059 (1331)
....- ......|..|.+...+.|+++.|++.|++..+-+. .-+
T Consensus 416 ~~~g~------------------------------~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~-------vs~ 458 (857)
T PLN03077 416 ERKGL------------------------------ISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDV-------ISW 458 (857)
T ss_pred HHhCC------------------------------CcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCe-------eeH
Confidence 22210 00113455566666666666666666665532111 134
Q ss_pred ccchhhhcccccchhhhhhhHHHH
Q 000722 1060 RGLALRLANHGELTRLSGLVTNLI 1083 (1331)
Q Consensus 1060 ~~l~ll~~~~g~~~~l~~l~~~~~ 1083 (1331)
..|...|+..|+.+...++.+.+.
T Consensus 459 ~~mi~~~~~~g~~~eA~~lf~~m~ 482 (857)
T PLN03077 459 TSIIAGLRLNNRCFEALIFFRQML 482 (857)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH
Confidence 445555555555555444444443
No 361
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.62 E-value=1 Score=54.52 Aligned_cols=100 Identities=14% Similarity=0.151 Sum_probs=66.6
Q ss_pred EEEEEeecceeEeeeecccCCCCCccccc----cccceeeehhhcccCCCcceEeecCCCceeeeeehhhheeehhhcCC
Q 000722 135 FLVICCVNKAIFLDLVTMRGRDIPKQELD----NKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGG 210 (1331)
Q Consensus 135 lLasgs~d~iIvwDl~t~~~~~i~~~~~h----~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~~~v~~~~~g 210 (1331)
.|+.-+++++.+||.+-.....+.....| .....|.+- . ...+|++||.+|.||+||- .+...++..++
T Consensus 397 TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aT-----T-~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPg 469 (644)
T KOG2395|consen 397 TLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFAT-----T-ESGYIVVGSLKGDIRLYDR-IGRRAKTALPG 469 (644)
T ss_pred cEEeecCCceEEecccccCcceeeeeeccccccccccceeee-----c-CCceEEEeecCCcEEeehh-hhhhhhhcccc
Confidence 57777888888998773222111122222 223445544 2 3458999999999999997 66666666668
Q ss_pred CccchhhhhHhhhccccEEEeecCCCceEEEEecc
Q 000722 211 HKGSISCLMTFMASSGEALLVSGGSDGLLILWSAD 245 (1331)
Q Consensus 211 H~~~V~~vawf~~spdg~lLaSgs~DgtIrVWDl~ 245 (1331)
-..+|..|. .+.+|.+|+..+ +.++.+-+..
T Consensus 470 LG~~I~hVd---vtadGKwil~Tc-~tyLlLi~t~ 500 (644)
T KOG2395|consen 470 LGDAIKHVD---VTADGKWILATC-KTYLLLIDTL 500 (644)
T ss_pred cCCceeeEE---eeccCcEEEEec-ccEEEEEEEe
Confidence 889999887 788998887544 5566666543
No 362
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=90.43 E-value=1.1 Score=58.16 Aligned_cols=142 Identities=8% Similarity=-0.004 Sum_probs=90.5
Q ss_pred CcceEee-cCCCceeeeeehhhheeehhhcCCCccchhhhhHhhhcc----ccEEEeecCCCceEEEEeccCCC--cccc
Q 000722 180 DVPLVAF-GSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASS----GEALLVSGGSDGLLILWSADHGQ--DSRE 252 (1331)
Q Consensus 180 dg~~Las-Gs~DGtIrlWDl~t~~~v~~~~~gH~~~V~~vawf~~sp----dg~lLaSgs~DgtIrVWDl~tg~--~~~~ 252 (1331)
+..+|+. ......|+-.|++.|+.+..+.......|..++ .-+. +...-..|-.+..+..||.+-.. ++..
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~--p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~ 569 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIA--PDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDS 569 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEec--ccccccccCCCceEEEECCCceEEeccCCCCCceeec
Confidence 4444444 345678999999999999988733334466654 1110 12234556778889999998542 2211
Q ss_pred ccccceeeeccCcEEEEEechhccCCCcEEEeecCceeEeeeccchhhhcccCCCCcccccccccccCCCCCCCceeeee
Q 000722 253 LVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDILTCV 332 (1331)
Q Consensus 253 ~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg~lLa~s 332 (1331)
....+ ......+|++-.. ..+|++|+.+|.||+||- .|+.-.+ .+.+-..+|..|..+.||++|.+.
T Consensus 570 --~~k~Y-~~~~~Fs~~aTt~----~G~iavgs~~G~IRLyd~-~g~~AKT-----~lp~lG~pI~~iDvt~DGkwilaT 636 (794)
T PF08553_consen 570 --QSKQY-SSKNNFSCFATTE----DGYIAVGSNKGDIRLYDR-LGKRAKT-----ALPGLGDPIIGIDVTADGKWILAT 636 (794)
T ss_pred --ccccc-ccCCCceEEEecC----CceEEEEeCCCcEEeecc-cchhhhh-----cCCCCCCCeeEEEecCCCcEEEEe
Confidence 11111 2334466776653 559999999999999994 3332222 256777899999999999977665
Q ss_pred ecce
Q 000722 333 KDSH 336 (1331)
Q Consensus 333 ~Dg~ 336 (1331)
.+..
T Consensus 637 c~ty 640 (794)
T PF08553_consen 637 CKTY 640 (794)
T ss_pred ecce
Confidence 5554
No 363
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=90.33 E-value=1.2 Score=61.75 Aligned_cols=121 Identities=20% Similarity=0.178 Sum_probs=76.7
Q ss_pred HHHHhhhhccccccchHHHHHHHHHHHhcccccccccccccccchhhhcccccchhhhhhhHHHHhhccC-hhhhh----
Q 000722 1019 KEFLDLIDAADATGQANIAREALKRLAAAGSVKGALQGHELRGLALRLANHGELTRLSGLVTNLISLGLG-REAAF---- 1093 (1331)
Q Consensus 1019 ~~w~~l~~~al~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~ll~~~~g~~~~l~~l~~~~~~~~~~-~~~af---- 1093 (1331)
..+..||+..+.+|+++.|+++|+++-... ++.. .-+..|..+|...|+.++..++.+.+.+.... -+..+
T Consensus 604 ~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~---~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~ 679 (1157)
T PRK11447 604 RIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNA---DARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVAL 679 (1157)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCH---HHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 456778999999999999999999884321 1111 12346788899999999999998877765322 12212
Q ss_pred hhhhcCchHHHHHHhhhhhhHH--------HHHHh---hhccC-CCcHHHHHHHHHHHHhhh
Q 000722 1094 SAAILGDNALMEKAWQDTGMLA--------EAVLH---AHAHG-RPSLKNLVEAWNKMLQKE 1143 (1331)
Q Consensus 1094 ~~~~lgd~~~~~~~l~~~~~~~--------~A~~~---A~~~~-~~~~~~~~~~w~~~l~~~ 1143 (1331)
....+|+.+++++++.+.-... .|.++ |+-|- ..+..+.++.|++-|...
T Consensus 680 ~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~ 741 (1157)
T PRK11447 680 AWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVAS 741 (1157)
T ss_pred HHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Confidence 1127899999998887653321 12111 33331 124566777777777533
No 364
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=90.27 E-value=2.5 Score=48.35 Aligned_cols=147 Identities=14% Similarity=0.185 Sum_probs=78.4
Q ss_pred CCceEEEEEeecceeEeeeecc--cC-CCCCccccccccceeeehhhcccCCCcceEeecCCCceeeeeehhhheeehhh
Q 000722 131 KGRHFLVICCVNKAIFLDLVTM--RG-RDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRY 207 (1331)
Q Consensus 131 dg~~lLasgs~d~iIvwDl~t~--~~-~~i~~~~~h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~~~v~~~ 207 (1331)
.+...++++...++.+|.+... .. ..... ..-.+.+.+++| .++.++.|..++ ..+.|+.++.....+
T Consensus 103 ~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke-~~lp~~~~~i~~-------~~~~i~v~~~~~-f~~idl~~~~~~~l~ 173 (275)
T PF00780_consen 103 EGSRRLCVAVKKKILIYEWNDPRNSFSKLLKE-ISLPDPPSSIAF-------LGNKICVGTSKG-FYLIDLNTGSPSELL 173 (275)
T ss_pred ccceEEEEEECCEEEEEEEECCcccccceeEE-EEcCCCcEEEEE-------eCCEEEEEeCCc-eEEEecCCCCceEEe
Confidence 3444677777777666655542 11 12111 222578899999 366788886555 677888866543332
Q ss_pred cCCCc-----------cchhhhhHhhhccccEEEeecCCCceEEEEeccCCCccccccccceeeeccCcEEEEEechhcc
Q 000722 208 TGGHK-----------GSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMG 276 (1331)
Q Consensus 208 ~~gH~-----------~~V~~vawf~~spdg~lLaSgs~DgtIrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~ 276 (1331)
..... .++..+ .-+++.+|++ .|..-.+.|. .|+..+ ...+.- ...+.++.+..
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~e~Ll~--~~~~g~fv~~-~G~~~r----~~~i~W-~~~p~~~~~~~--- 238 (275)
T PF00780_consen 174 DPSDSSSSFKSRNSSSKPLGIF----QLSDNEFLLC--YDNIGVFVNK-NGEPSR----KSTIQW-SSAPQSVAYSS--- 238 (275)
T ss_pred CccCCcchhhhcccCCCceEEE----EeCCceEEEE--ecceEEEEcC-CCCcCc----ccEEEc-CCchhEEEEEC---
Confidence 11111 112111 1223445543 2333333344 343322 112332 23456666653
Q ss_pred CCCcEEEeecCceeEeeeccchhhhccc
Q 000722 277 GSPQLITIGADKTLAIWDTVSFKELRRI 304 (1331)
Q Consensus 277 dg~~LaSgs~Dg~IrIWDl~t~~~l~~~ 304 (1331)
++|+..+.+ .|.||++.+++.++++
T Consensus 239 --pyli~~~~~-~iEV~~~~~~~lvQ~i 263 (275)
T PF00780_consen 239 --PYLIAFSSN-SIEVRSLETGELVQTI 263 (275)
T ss_pred --CEEEEECCC-EEEEEECcCCcEEEEE
Confidence 577776664 4999999999887774
No 365
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=90.24 E-value=0.26 Score=66.35 Aligned_cols=163 Identities=13% Similarity=0.010 Sum_probs=105.6
Q ss_pred ccCCchhhhHHHhhhccc-----cchhHHHHHhhcccccccccCCC-------cccceeeeecccc---chHHHHHHhhh
Q 000722 913 AYGDSVSAVKWASRLGRE-----HHDDLAQFMLGMGYATEALHLPG-------ISKRLEFDLAMQS---NDLKRALQCLI 977 (1331)
Q Consensus 913 ~~~~~~~a~~~~~~i~~~-----~~~~~a~fl~~~g~~e~Al~~~~-------ds~~~~f~la~~~---g~l~~a~~~~~ 977 (1331)
..|++++|.+...++... .+..++..+...|..++|+++.. +.....+.|+..+ |+++.|+....
T Consensus 521 ~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~ 600 (987)
T PRK09782 521 QVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLT 600 (987)
T ss_pred HCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 568999998887763322 13455666777888777766541 1134455566667 89999988872
Q ss_pred hcccccccCCCCCCCChhhhcccccchhhHHHHHHHHHHHHHHHHhhhhccccccchHHHHHHHHHHHhccccccccccc
Q 000722 978 TMSNSRDIGQDHPGLDLNDILTLTTKKENIVEAVQGIVKFAKEFLDLIDAADATGQANIAREALKRLAAAGSVKGALQGH 1057 (1331)
Q Consensus 978 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~~~al~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 1057 (1331)
...... .+ ..-|..+|......|+++.|+++|+++-... +..+-
T Consensus 601 ~AL~l~-P~-------------------------------~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~--- 644 (987)
T PRK09782 601 RSLNIA-PS-------------------------------ANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSN--- 644 (987)
T ss_pred HHHHhC-CC-------------------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH---
Confidence 221110 00 1678899999999999999999999985433 22221
Q ss_pred ccccchhhhcccccchhhhhhhHHHHhhccCh-----hhhhhhhhcCchHHHHHHhhhh
Q 000722 1058 ELRGLALRLANHGELTRLSGLVTNLISLGLGR-----EAAFSAAILGDNALMEKAWQDT 1111 (1331)
Q Consensus 1058 ~~~~l~ll~~~~g~~~~l~~l~~~~~~~~~~~-----~~af~~~~lgd~~~~~~~l~~~ 1111 (1331)
-+..|..+|...|+.+....+.+.+.+..-.. +.+.....+||.+++++.|.+.
T Consensus 645 a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~A 703 (987)
T PRK09782 645 YQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLV 703 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 12356667788899999888888877764320 1222222788888888877654
No 366
>PLN03077 Protein ECB2; Provisional
Probab=90.13 E-value=0.69 Score=62.11 Aligned_cols=197 Identities=14% Similarity=0.062 Sum_probs=106.2
Q ss_pred ccCCchhhhHHHhhhcccc---chhHHHHHhhcccccccccCCCccccee-------e----eeccccchHHHHHHhhhh
Q 000722 913 AYGDSVSAVKWASRLGREH---HDDLAQFMLGMGYATEALHLPGISKRLE-------F----DLAMQSNDLKRALQCLIT 978 (1331)
Q Consensus 913 ~~~~~~~a~~~~~~i~~~~---~~~~a~fl~~~g~~e~Al~~~~ds~~~~-------f----~la~~~g~l~~a~~~~~~ 978 (1331)
-.|++++|.+++.++.+.. ++.++.-+...|..++|+.+... -... | .-+-.+|+++.+.++-.+
T Consensus 436 k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~-m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~ 514 (857)
T PLN03077 436 KCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQ-MLLTLKPNSVTLIAALSACARIGALMCGKEIHAH 514 (857)
T ss_pred HcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHH-HHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHH
Confidence 3478888888877754432 56666666777777777766533 1110 1 112234455555544433
Q ss_pred cccccccCCCCCCCChhhhcccccchhhHHHHHHHH---HHHHHHHHhhhhccccccchHHHHHHHHHHHhccccccccc
Q 000722 979 MSNSRDIGQDHPGLDLNDILTLTTKKENIVEAVQGI---VKFAKEFLDLIDAADATGQANIAREALKRLAAAGSVKGALQ 1055 (1331)
Q Consensus 979 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~w~~l~~~al~~g~~~~a~~~~~~~~~~~~~~~~~~ 1055 (1331)
+... +...+..-.|-|+.+-.|..+..++..-+ .....-|..|.......|+.+.|.+.|++....+-. -.
T Consensus 515 ~~~~---g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~---Pd 588 (857)
T PLN03077 515 VLRT---GIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVN---PD 588 (857)
T ss_pred HHHh---CCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---CC
Confidence 2211 00000111122222222222222222111 111256999999999999999999999988643311 11
Q ss_pred ccccccchhhhcccccchhhhhhhHHHH-hhccChhhhhhhhhcCchHHHHHHhhhhhhHHHHHHhhhc
Q 000722 1056 GHELRGLALRLANHGELTRLSGLVTNLI-SLGLGREAAFSAAILGDNALMEKAWQDTGMLAEAVLHAHA 1123 (1331)
Q Consensus 1056 ~~~~~~l~ll~~~~g~~~~l~~l~~~~~-~~~~~~~~af~~~~lgd~~~~~~~l~~~~~~~~A~~~A~~ 1123 (1331)
..-|..|+--|+..|+.++..++.+.+. +.|-.-+.. -+.-++++|.+.|++.||..+-+.
T Consensus 589 ~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~-------~y~~lv~~l~r~G~~~eA~~~~~~ 650 (857)
T PLN03077 589 EVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLK-------HYACVVDLLGRAGKLTEAYNFINK 650 (857)
T ss_pred cccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchH-------HHHHHHHHHHhCCCHHHHHHHHHH
Confidence 1245567777888899999888888887 344321211 123356666666666666655444
No 367
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=90.09 E-value=1.5 Score=43.19 Aligned_cols=93 Identities=19% Similarity=0.251 Sum_probs=61.5
Q ss_pred ceEeecCCCceeeeeehhhheeehhhcCCCccchhhhhHhhhccccEEEeecCCCceEEEEeccCCCccccccccceeee
Q 000722 182 PLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKA 261 (1331)
Q Consensus 182 ~~LasGs~DGtIrlWDl~t~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrVWDl~tg~~~~~~~~~~~l~g 261 (1331)
+.|++||+|..||+|+-. +.+..+. ....|+++. .-.+..|+-+..+|+|-+|+-.... +. .+
T Consensus 16 ~eLlvGs~D~~IRvf~~~--e~~~Ei~--e~~~v~~L~----~~~~~~F~Y~l~NGTVGvY~~~~Rl--WR------iK- 78 (111)
T PF14783_consen 16 NELLVGSDDFEIRVFKGD--EIVAEIT--ETDKVTSLC----SLGGGRFAYALANGTVGVYDRSQRL--WR------IK- 78 (111)
T ss_pred ceEEEecCCcEEEEEeCC--cEEEEEe--cccceEEEE----EcCCCEEEEEecCCEEEEEeCccee--ee------ec-
Confidence 579999999999999744 4555553 456677775 2234679999999999999764322 21 12
Q ss_pred ccCcEEEEEechhc-cCCCcEEEeecCceeE
Q 000722 262 HDGGVVAVELSRVM-GGSPQLITIGADKTLA 291 (1331)
Q Consensus 262 H~~~V~svafsp~~-~dg~~LaSgs~Dg~Ir 291 (1331)
....++++.+.... +..+-|++|-.+|.|-
T Consensus 79 SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 79 SKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred cCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 12236666665421 1235788888888874
No 368
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.91 E-value=0.31 Score=62.39 Aligned_cols=147 Identities=15% Similarity=0.129 Sum_probs=111.7
Q ss_pred ccCCchhhhHHHhhhccccchhHHHHHhhcccccccccCCCcccceeeeecc--------ccchHHHHHHhhhhcccccc
Q 000722 913 AYGDSVSAVKWASRLGREHHDDLAQFMLGMGYATEALHLPGISKRLEFDLAM--------QSNDLKRALQCLITMSNSRD 984 (1331)
Q Consensus 913 ~~~~~~~a~~~~~~i~~~~~~~~a~fl~~~g~~e~Al~~~~ds~~~~f~la~--------~~g~l~~a~~~~~~~~~~~~ 984 (1331)
+.-|-..+++++.+++.---+.||..--..+.+|||..+. .|||+-. .-++|++|.+.| ..
T Consensus 1032 ikad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~if-----kkf~~n~~A~~VLie~i~~ldRA~efA------e~ 1100 (1666)
T KOG0985|consen 1032 IKADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIF-----KKFDMNVSAIQVLIENIGSLDRAYEFA------ER 1100 (1666)
T ss_pred hhcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHH-----HHhcccHHHHHHHHHHhhhHHHHHHHH------Hh
Confidence 3456677788888877766777888888888888888754 3455432 258899999999 77
Q ss_pred cCCCCCCCChhhhcccccchhhHHHHHHHHHHHHHHHHhhhhccccccchHHHHHHHHHHHhcccccccccccccccchh
Q 000722 985 IGQDHPGLDLNDILTLTTKKENIVEAVQGIVKFAKEFLDLIDAADATGQANIAREALKRLAAAGSVKGALQGHELRGLAL 1064 (1331)
Q Consensus 985 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~~~al~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~l 1064 (1331)
.+++ ..|.+|+.+-|.+|.+..|.+.|-|+.|-. .|....-
T Consensus 1101 ~n~p------------------------------~vWsqlakAQL~~~~v~dAieSyikadDps---------~y~eVi~ 1141 (1666)
T KOG0985|consen 1101 CNEP------------------------------AVWSQLAKAQLQGGLVKDAIESYIKADDPS---------NYLEVID 1141 (1666)
T ss_pred hCCh------------------------------HHHHHHHHHHHhcCchHHHHHHHHhcCCcH---------HHHHHHH
Confidence 7777 899999999999999999999999995443 6777888
Q ss_pred hhcccccchhhhhhhHHHHhhccCh--hh--hhhhhhcCchHHHHHHhh
Q 000722 1065 RLANHGELTRLSGLVTNLISLGLGR--EA--AFSAAILGDNALMEKAWQ 1109 (1331)
Q Consensus 1065 l~~~~g~~~~l~~l~~~~~~~~~~~--~~--af~~~~lgd~~~~~~~l~ 1109 (1331)
....+|+-+.|.+-+-+|.+..+-. .. .|+-+-+|...+..+.+.
T Consensus 1142 ~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~AyAkt~rl~elE~fi~ 1190 (1666)
T KOG0985|consen 1142 VASRTGKYEDLVKYLLMARKKVREPYIDSELIFAYAKTNRLTELEEFIA 1190 (1666)
T ss_pred HHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHHHHhchHHHHHHHhc
Confidence 8899999999999999998876432 23 333336666666665553
No 369
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=89.65 E-value=14 Score=49.05 Aligned_cols=21 Identities=19% Similarity=0.186 Sum_probs=10.8
Q ss_pred HhhhccCCCcHHHHHHHHHHH
Q 000722 1119 LHAHAHGRPSLKNLVEAWNKM 1139 (1331)
Q Consensus 1119 ~~A~~~~~~~~~~~~~~w~~~ 1139 (1331)
..|+.++...|..+++...+.
T Consensus 321 ~qA~~~s~~~L~r~ie~l~ea 341 (824)
T PRK07764 321 AQAQRLGPAELTRAADVVNDG 341 (824)
T ss_pred HHHHhCCHHHHHHHHHHHHHH
Confidence 445555555555555544444
No 370
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=89.63 E-value=0.51 Score=39.25 Aligned_cols=36 Identities=17% Similarity=0.226 Sum_probs=30.9
Q ss_pred CCCcEEEEEeecCCceeEeecCCCceeeeccccceEE
Q 000722 10 TNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVI 46 (1331)
Q Consensus 10 Hs~~V~~lafSPdg~~LaSgs~DGtV~VWD~~tg~~i 46 (1331)
-...|.+++|+|+.++||.+..+|.|.|+.+ +++.+
T Consensus 10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qri 45 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQRI 45 (47)
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcCc
Confidence 3467999999999999999999999999988 55443
No 371
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=88.92 E-value=10 Score=48.17 Aligned_cols=18 Identities=28% Similarity=0.324 Sum_probs=13.9
Q ss_pred cccccchHHHHHHHHHHH
Q 000722 1028 ADATGQANIAREALKRLA 1045 (1331)
Q Consensus 1028 al~~g~~~~a~~~~~~~~ 1045 (1331)
-.-.++.|.|-+||+-++
T Consensus 375 edir~emDd~~~~f~lL~ 392 (1102)
T KOG1924|consen 375 EDIRAEMDDANEVFELLA 392 (1102)
T ss_pred HhhhhhhccHHHHHHHHH
Confidence 344678899999998875
No 372
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=88.63 E-value=11 Score=45.29 Aligned_cols=78 Identities=13% Similarity=0.063 Sum_probs=36.6
Q ss_pred cccccCCCCCCCCceEEEEEeecce---eEeeeecccCCCCCccccccccceeeehhhcccCCCcceEeecCCCceeeee
Q 000722 120 TSGFASPPPSTKGRHFLVICCVNKA---IFLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVL 196 (1331)
Q Consensus 120 ~~~V~svafspdg~~lLasgs~d~i---IvwDl~t~~~~~i~~~~~h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlW 196 (1331)
...++.=+|.++|+.+|..+..++. ..+|+.+++...+.... ........+ +++++.++-...+..|+-.
T Consensus 35 ~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~--g~~~~g~~~-----s~~~~~~~Yv~~~~~l~~v 107 (386)
T PF14583_consen 35 RLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGP--GDNTFGGFL-----SPDDRALYYVKNGRSLRRV 107 (386)
T ss_dssp ---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS---B-TTT-EE------TTSSEEEEEETTTEEEEE
T ss_pred ceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCC--CCCccceEE-----ecCCCeEEEEECCCeEEEE
Confidence 4566777899999877776664443 35588887654332211 122223344 4566666544445678888
Q ss_pred ehhhheee
Q 000722 197 SMISWKLV 204 (1331)
Q Consensus 197 Dl~t~~~v 204 (1331)
|+++.+..
T Consensus 108 dL~T~e~~ 115 (386)
T PF14583_consen 108 DLDTLEER 115 (386)
T ss_dssp ETTT--EE
T ss_pred ECCcCcEE
Confidence 88886543
No 373
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=88.45 E-value=1.6 Score=53.47 Aligned_cols=164 Identities=14% Similarity=0.067 Sum_probs=90.1
Q ss_pred cccCCCcEEEEEeecCCceeEeec---CC-CceeeeccccceEEeeeccCCcccchhhhhhhhhhcccccccCCCCcccc
Q 000722 7 FRPTNDKIVKIQLHPTHPWLVTAD---AS-DHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAM 82 (1331)
Q Consensus 7 L~gHs~~V~~lafSPdg~~LaSgs---~D-GtV~VWD~~tg~~i~s~~~~~~~~i~~vspdg~~Lasgs~d~~g~~l~~l 82 (1331)
+..-...+..-.|+|+++.++-.. .. ..+.++|+.+++................+|+|+.|++....+..
T Consensus 188 l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~------ 261 (425)
T COG0823 188 LTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGS------ 261 (425)
T ss_pred ecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCC------
Confidence 333445677778999998765542 22 46899999998776666655555556666899998887643211
Q ss_pred cCCceeEEeeecchhhHHHHhhhccccccCCcccccccccccCCCCCCCCceEEEEEeecce---eEeeeecccCCCCCc
Q 000722 83 RGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKA---IFLDLVTMRGRDIPK 159 (1331)
Q Consensus 83 ~gg~V~sVaf~DgtIrvWdl~tg~~l~~~~~~~~~~~~~~V~svafspdg~~lLasgs~d~i---IvwDl~t~~~~~i~~ 159 (1331)
-.|.+.|+..+... .+... ...-..-.|+|||+.++.+.+..+. .+.|.+..... .
T Consensus 262 ------------~~iy~~dl~~~~~~--~Lt~~----~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~---r 320 (425)
T COG0823 262 ------------PDIYLMDLDGKNLP--RLTNG----FGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVT---R 320 (425)
T ss_pred ------------ccEEEEcCCCCcce--ecccC----CccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCcee---E
Confidence 11222333332211 01111 1112256689999955555444432 23366554332 2
Q ss_pred cccccccceeeehhhcccCCCcceEeecCC-Cce--eeeeehhhhe
Q 000722 160 QELDNKSLVCMEFLSRSAVGDVPLVAFGSS-DGV--IRVLSMISWK 202 (1331)
Q Consensus 160 ~~~h~~~V~~Vaf~P~s~Spdg~~LasGs~-DGt--IrlWDl~t~~ 202 (1331)
.......-.+-.| +|||++|+..+. +|. |.+.|+.++.
T Consensus 321 iT~~~~~~~~p~~-----SpdG~~i~~~~~~~g~~~i~~~~~~~~~ 361 (425)
T COG0823 321 LTFSGGGNSNPVW-----SPDGDKIVFESSSGGQWDIDKNDLASGG 361 (425)
T ss_pred eeccCCCCcCccC-----CCCCCEEEEEeccCCceeeEEeccCCCC
Confidence 2222222224556 789999887764 343 5555555444
No 374
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=88.31 E-value=0.64 Score=57.33 Aligned_cols=71 Identities=14% Similarity=0.056 Sum_probs=57.8
Q ss_pred hccccEEEeecCCCceEEEEeccCCCccccccccceeeeccCcEE-EEEechhccCCCcEEEeecCceeEeeeccchhhh
Q 000722 223 ASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVV-AVELSRVMGGSPQLITIGADKTLAIWDTVSFKEL 301 (1331)
Q Consensus 223 ~spdg~lLaSgs~DgtIrVWDl~tg~~~~~~~~~~~l~gH~~~V~-svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l 301 (1331)
.+|.-.++|.+..+|.|.+..++ .+.+++ +.-|...++ +++|.| ||+.|+.|-.||+|++.|+.++..+
T Consensus 28 wnP~~dLiA~~t~~gelli~R~n-~qRlwt------ip~p~~~v~~sL~W~~---DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 28 WNPKMDLIATRTEKGELLIHRLN-WQRLWT------IPIPGENVTASLCWRP---DGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred EcCccchhheeccCCcEEEEEec-cceeEe------ccCCCCccceeeeecC---CCCEEEEEecCCeEEEEEccCCCce
Confidence 36777899999999999888887 554444 344556666 999999 8999999999999999999988766
Q ss_pred cc
Q 000722 302 RR 303 (1331)
Q Consensus 302 ~~ 303 (1331)
..
T Consensus 98 ~~ 99 (665)
T KOG4640|consen 98 VS 99 (665)
T ss_pred ec
Confidence 55
No 375
>KOG0566 consensus Inositol-1,4,5-triphosphate 5-phosphatase (synaptojanin), INP51/INP52/INP53 family [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.05 E-value=2.4 Score=54.79 Aligned_cols=74 Identities=22% Similarity=0.364 Sum_probs=46.4
Q ss_pred eccEEeeehhhhhhhhcccCCCcceeeeecccCCchhhhHHHhhhccccchhHHHHHh----hcccccccccCCCcccce
Q 000722 883 KDGVLWLIDRYMCAHALSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLAQFML----GMGYATEALHLPGISKRL 958 (1331)
Q Consensus 883 ~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~i~~~~~~~~a~fl~----~~g~~e~Al~~~~ds~~~ 958 (1331)
.|..+||-|=++ .|+++.=+-+.+|.+|||++-.+. +| |-+=+. =.||.|-+|.|. |..
T Consensus 714 HD~ifW~GDFNY-----RI~l~nEEVr~~v~~~d~~kL~e~----DQ-----L~~q~~~G~vF~gF~E~~ltF~---PTY 776 (1080)
T KOG0566|consen 714 HDYIFWLGDFNY-----RIDLSNEEVRRLVRNQDLDKLLEY----DQ-----LTQQMNAGQVFPGFHEGQLTFP---PTY 776 (1080)
T ss_pred CceEEEecccce-----eecCCHHHHHHHHHhccHHHHhhH----HH-----HHHHHhcCcccccccccccccC---Ccc
Confidence 677788888664 445555555667778887666542 11 111111 148999999997 889
Q ss_pred eeeeccccchHHHHHHh
Q 000722 959 EFDLAMQSNDLKRALQC 975 (1331)
Q Consensus 959 ~f~la~~~g~l~~a~~~ 975 (1331)
|||+- .+++|...++
T Consensus 777 KyD~g--Td~YDTSeK~ 791 (1080)
T KOG0566|consen 777 KYDPG--TDDYDTSEKC 791 (1080)
T ss_pred cccCC--CCccccchhc
Confidence 99974 4555555544
No 376
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=88.01 E-value=3.2 Score=52.93 Aligned_cols=141 Identities=16% Similarity=0.197 Sum_probs=79.9
Q ss_pred CCceEEEEEeecce-----e-EeeeecccCCCCCccccccccceeeehhhcccCCCcceEeecCCCc------eeeeeeh
Q 000722 131 KGRHFLVICCVNKA-----I-FLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDG------VIRVLSM 198 (1331)
Q Consensus 131 dg~~lLasgs~d~i-----I-vwDl~t~~~~~i~~~~~h~~~V~~Vaf~P~s~Spdg~~LasGs~DG------tIrlWDl 198 (1331)
+|. +.++|+.|+. + +||..+.+...+............+.+ +|.+.++|+.|+ ++..||.
T Consensus 380 ~g~-iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~-------~g~iYi~GG~~~~~~~l~sve~YDP 451 (571)
T KOG4441|consen 380 DGK-LYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVL-------GGKLYIIGGGDGSSNCLNSVECYDP 451 (571)
T ss_pred CCE-EEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEE-------CCEEEEEcCcCCCccccceEEEEcC
Confidence 455 7777777642 2 677777655444433333334444555 688888888654 4678888
Q ss_pred hhhe--eehhhc---CCCccchhhhhHhhhccccEEEeecCCCce-----EEEEeccCCCccccccccceeeeccCcEEE
Q 000722 199 ISWK--LVRRYT---GGHKGSISCLMTFMASSGEALLVSGGSDGL-----LILWSADHGQDSRELVPKLSLKAHDGGVVA 268 (1331)
Q Consensus 199 ~t~~--~v~~~~---~gH~~~V~~vawf~~spdg~lLaSgs~Dgt-----IrVWDl~tg~~~~~~~~~~~l~gH~~~V~s 268 (1331)
.+.+ .+..+. .+|. ++ .-++.+.+.||.|+. |..||..+.+. .....+......+..
T Consensus 452 ~t~~W~~~~~M~~~R~~~g-----~a----~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W----~~v~~m~~~rs~~g~ 518 (571)
T KOG4441|consen 452 ETNTWTLIAPMNTRRSGFG-----VA----VLNGKIYVVGGFDGTSALSSVERYDPETNQW----TMVAPMTSPRSAVGV 518 (571)
T ss_pred CCCceeecCCcccccccce-----EE----EECCEEEEECCccCCCccceEEEEcCCCCce----eEcccCccccccccE
Confidence 7643 333322 1121 21 337888999998873 77788877652 222223323333333
Q ss_pred EEechhccCCCcEEEeecCce-----eEeeeccc
Q 000722 269 VELSRVMGGSPQLITIGADKT-----LAIWDTVS 297 (1331)
Q Consensus 269 vafsp~~~dg~~LaSgs~Dg~-----IrIWDl~t 297 (1331)
+.+ ++...++|+.||. |..||..+
T Consensus 519 ~~~-----~~~ly~vGG~~~~~~l~~ve~ydp~~ 547 (571)
T KOG4441|consen 519 VVL-----GGKLYAVGGFDGNNNLNTVECYDPET 547 (571)
T ss_pred EEE-----CCEEEEEecccCccccceeEEcCCCC
Confidence 333 5678888887764 44555443
No 377
>PHA02713 hypothetical protein; Provisional
Probab=87.81 E-value=1.9 Score=54.94 Aligned_cols=146 Identities=6% Similarity=0.048 Sum_probs=77.8
Q ss_pred CCceEEEEEeecc------eeEeeeecccCCCCCccccccccceeeehhhcccCCCcceEeecCCCc-------------
Q 000722 131 KGRHFLVICCVNK------AIFLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDG------------- 191 (1331)
Q Consensus 131 dg~~lLasgs~d~------iIvwDl~t~~~~~i~~~~~h~~~V~~Vaf~P~s~Spdg~~LasGs~DG------------- 191 (1331)
+|+ +.+.|+.++ +-+||..+.....+............+.+ ++...+.|+.++
T Consensus 351 ~g~-IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~-------~g~IYviGG~~~~~~~~~~~~~~~~ 422 (557)
T PHA02713 351 DDT-IYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVL-------DQYIYIIGGRTEHIDYTSVHHMNSI 422 (557)
T ss_pred CCE-EEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEE-------CCEEEEEeCCCcccccccccccccc
Confidence 455 667666542 22677776544333322222222233344 577777777542
Q ss_pred ----------eeeeeehhhh--eeehhhcCCCccchhhhhHhhhccccEEEeecCCC------ceEEEEeccC-CCcccc
Q 000722 192 ----------VIRVLSMISW--KLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSD------GLLILWSADH-GQDSRE 252 (1331)
Q Consensus 192 ----------tIrlWDl~t~--~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~D------gtIrVWDl~t-g~~~~~ 252 (1331)
.|..||..+. ..+..+..+... .++ ..-++.+.+.|+.+ ..+..||..+ .+
T Consensus 423 ~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~--~~~----~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~---- 492 (557)
T PHA02713 423 DMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIR--PGV----VSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNG---- 492 (557)
T ss_pred cccccccccceEEEECCCCCeEeecCCCCccccc--CcE----EEECCEEEEEeCCCCCCccceeEEEecCCCCCC----
Confidence 4777887754 333333211111 112 12367788888764 2467899887 44
Q ss_pred ccccceeeeccCcEEEEEechhccCCCcEEEeecCc--eeEeeeccchh
Q 000722 253 LVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADK--TLAIWDTVSFK 299 (1331)
Q Consensus 253 ~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg--~IrIWDl~t~~ 299 (1331)
|.....+.........+.+ ++.+.++||.|+ .+..||..+.+
T Consensus 493 W~~~~~m~~~r~~~~~~~~-----~~~iyv~Gg~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 493 WELITTTESRLSALHTILH-----DNTIMMLHCYESYMLQDTFNVYTYE 536 (557)
T ss_pred eeEccccCcccccceeEEE-----CCEEEEEeeecceeehhhcCccccc
Confidence 2222233333333333333 578999999888 67777766544
No 378
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=87.77 E-value=14 Score=42.07 Aligned_cols=151 Identities=12% Similarity=0.073 Sum_probs=80.2
Q ss_pred CCceEEEEEeecceeEeeeecccCCCCCccccccccceeeehhhcccCCCcceEeecCCCceeeeeehhhheeehhh---
Q 000722 131 KGRHFLVICCVNKAIFLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRY--- 207 (1331)
Q Consensus 131 dg~~lLasgs~d~iIvwDl~t~~~~~i~~~~~h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~~~v~~~--- 207 (1331)
.++ .|+.|.++++++++..... ......+...|..+... ++-+.+++-+ |+.++++++.........
T Consensus 6 ~~~-~L~vGt~~Gl~~~~~~~~~---~~~~i~~~~~I~ql~vl-----~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~ 75 (275)
T PF00780_consen 6 WGD-RLLVGTEDGLYVYDLSDPS---KPTRILKLSSITQLSVL-----PELNLLLVLS-DGQLYVYDLDSLEPVSTSAPL 75 (275)
T ss_pred CCC-EEEEEECCCEEEEEecCCc---cceeEeecceEEEEEEe-----cccCEEEEEc-CCccEEEEchhhccccccccc
Confidence 344 6777788898777772211 11122233448888885 3455555543 499999999864433310
Q ss_pred ----------cCCCccchhhhhHhhhccccEEEeecCCCceEEEEeccCCCccccccccceeeeccCcEEEEEechhccC
Q 000722 208 ----------TGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGG 277 (1331)
Q Consensus 208 ----------~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~d 277 (1331)
.......+...+- .....+...+.....++|.+|.......... .....+. -...+.+++|..
T Consensus 76 ~~~~~~~~~~~~~~~~~v~~f~~-~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~-~~~ke~~-lp~~~~~i~~~~---- 148 (275)
T PF00780_consen 76 AFPKSRSLPTKLPETKGVSFFAV-NGGHEGSRRLCVAVKKKILIYEWNDPRNSFS-KLLKEIS-LPDPPSSIAFLG---- 148 (275)
T ss_pred cccccccccccccccCCeeEEee-ccccccceEEEEEECCEEEEEEEECCccccc-ceeEEEE-cCCCcEEEEEeC----
Confidence 0011122221110 0123333344445556899888776421110 1111222 236688999985
Q ss_pred CCcEEEeecCceeEeeeccchhh
Q 000722 278 SPQLITIGADKTLAIWDTVSFKE 300 (1331)
Q Consensus 278 g~~LaSgs~Dg~IrIWDl~t~~~ 300 (1331)
+.|+.|..+ ...+.|+.++..
T Consensus 149 -~~i~v~~~~-~f~~idl~~~~~ 169 (275)
T PF00780_consen 149 -NKICVGTSK-GFYLIDLNTGSP 169 (275)
T ss_pred -CEEEEEeCC-ceEEEecCCCCc
Confidence 466666644 467888887654
No 379
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=87.42 E-value=0.7 Score=61.07 Aligned_cols=167 Identities=15% Similarity=0.045 Sum_probs=87.7
Q ss_pred eecccCCchhhhHHHhhh---cc---ccchhHHHHHhhcccccccccCCCcccce-------ee---eeccccchHHHHH
Q 000722 910 CLAAYGDSVSAVKWASRL---GR---EHHDDLAQFMLGMGYATEALHLPGISKRL-------EF---DLAMQSNDLKRAL 973 (1331)
Q Consensus 910 ~~~~~~~~~~a~~~~~~i---~~---~~~~~~a~fl~~~g~~e~Al~~~~ds~~~-------~f---~la~~~g~l~~a~ 973 (1331)
....+|++++|...+.+. .+ ..+..++.-+..+|-.++|+......... .. .+....|+++.|+
T Consensus 31 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~a~ 110 (899)
T TIGR02917 31 SYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARAYLLQGKFQQVL 110 (899)
T ss_pred HHHHcCChHhHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChhhhHHHHHHHHHHCCCHHHHH
Confidence 344557887777766551 11 22455666666677777766654321111 11 1234556777777
Q ss_pred HhhhhcccccccCCCCCCCChhhhcccccchhhHHHHHHHHHHHHHHHHhhhhccccccchHHHHHHHHHHHhccccccc
Q 000722 974 QCLITMSNSRDIGQDHPGLDLNDILTLTTKKENIVEAVQGIVKFAKEFLDLIDAADATGQANIAREALKRLAAAGSVKGA 1053 (1331)
Q Consensus 974 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~~~al~~g~~~~a~~~~~~~~~~~~~~~~ 1053 (1331)
+.+ .+...... ......|..+|..+...|+++.|+++|+++-... ++.
T Consensus 111 ~~~------~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~- 158 (899)
T TIGR02917 111 DEL------PGKTLLDD------------------------EGAAELLALRGLAYLGLGQLELAQKSYEQALAID-PRS- 158 (899)
T ss_pred Hhh------cccccCCc------------------------hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCC-
Confidence 666 22110000 0011456667777777788888888887763222 110
Q ss_pred ccccccccchhhhcccccchhhhhhhHHHHhhccChhhhhh-h---h-hcCchHHHHHHhhh
Q 000722 1054 LQGHELRGLALRLANHGELTRLSGLVTNLISLGLGREAAFS-A---A-ILGDNALMEKAWQD 1110 (1331)
Q Consensus 1054 ~~~~~~~~l~ll~~~~g~~~~l~~l~~~~~~~~~~~~~af~-~---~-~lgd~~~~~~~l~~ 1110 (1331)
..-+-.|..+|...|+.++..++.+.+.+.......++. . + ..||.+++++.+.+
T Consensus 159 --~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 218 (899)
T TIGR02917 159 --LYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRK 218 (899)
T ss_pred --hhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 112345666677777777777777666554432111111 1 1 45666666655543
No 380
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.00 E-value=0.51 Score=61.24 Aligned_cols=101 Identities=19% Similarity=0.285 Sum_probs=66.7
Q ss_pred EEEEEeecceeE-eeeecccCCCCCccccccccceeeehhhcccCCCcceEeecCCCceeeeeehhhheeehhhcCCCcc
Q 000722 135 FLVICCVNKAIF-LDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKG 213 (1331)
Q Consensus 135 lLasgs~d~iIv-wDl~t~~~~~i~~~~~h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~~~v~~~~~gH~~ 213 (1331)
+++.|++.+-+. .|... .......-..-..+|+|++| +.+|..++.|-.+|.|.+||+..++.++.+. .|..
T Consensus 101 ~ivi~Ts~ghvl~~d~~~-nL~~~~~ne~v~~~Vtsvaf-----n~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~-e~~a 173 (1206)
T KOG2079|consen 101 PIVIGTSHGHVLLSDMTG-NLGPLHQNERVQGPVTSVAF-----NQDGSLLLAGLGDGHVTVWDMHRAKILKVIT-EHGA 173 (1206)
T ss_pred eEEEEcCchhhhhhhhhc-ccchhhcCCccCCcceeeEe-----cCCCceeccccCCCcEEEEEccCCcceeeee-ecCC
Confidence 667777666553 34433 22211122233679999999 7899999999999999999999988888876 6666
Q ss_pred chhhhhHhhhccccEEEeecCCCceEEEEec
Q 000722 214 SISCLMTFMASSGEALLVSGGSDGLLILWSA 244 (1331)
Q Consensus 214 ~V~~vawf~~spdg~lLaSgs~DgtIrVWDl 244 (1331)
+++.+-......++..++++..-|. +|.+
T Consensus 174 p~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 174 PVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred ccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 6665531111233446777766665 5654
No 381
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=86.94 E-value=2.5 Score=41.69 Aligned_cols=101 Identities=14% Similarity=0.098 Sum_probs=57.2
Q ss_pred EEEEEechhcc-CCCcEEEeecCceeEeeeccchhhhcccCCCCcccccccccccCCCCCCCceeeeeecce--eeeeec
Q 000722 266 VVAVELSRVMG-GSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDILTCVKDSH--IWAIEH 342 (1331)
Q Consensus 266 V~svafsp~~~-dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg~lLa~s~Dg~--IWdl~~ 342 (1331)
|+++++....+ ....|++||+|..||+|+-.. .+..+ .....|.+++-...+++..+-.+|+ +|+-..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e--~~~Ei-------~e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~~ 72 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE--IVAEI-------TETDKVTSLCSLGGGRFAYALANGTVGVYDRSQ 72 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc--EEEEE-------ecccceEEEEEcCCCEEEEEecCCEEEEEeCcc
Confidence 66777765322 347899999999999998542 23221 2234455666566666666666665 343321
Q ss_pred CccccccccccccccCCCccccccccceEEEEEEeccC---CccEeeecceeEEE
Q 000722 343 PTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSL---QPHLVATGTNVGVI 394 (1331)
Q Consensus 343 ~~~~~l~~~~~~~~~~~~~~~l~~h~~~~I~~la~sp~---~~~lLAtGs~DG~I 394 (1331)
+ +| +..++..+.++.+... +-..|++|-.+|.|
T Consensus 73 R--------lW-----------RiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkv 108 (111)
T PF14783_consen 73 R--------LW-----------RIKSKNQVTSMAFYDINGDGVPELIVGWSNGKV 108 (111)
T ss_pred e--------ee-----------eeccCCCeEEEEEEcCCCCCceEEEEEecCCeE
Confidence 1 11 1111224555555432 22458888888876
No 382
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=86.23 E-value=4.8 Score=47.27 Aligned_cols=136 Identities=11% Similarity=-0.018 Sum_probs=71.7
Q ss_pred cccccCCCCCCCCceEEEEEe-----ec------ceeEeeeecccCCCCCccccccccceeeehhhcccCCCcceEeecC
Q 000722 120 TSGFASPPPSTKGRHFLVICC-----VN------KAIFLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGS 188 (1331)
Q Consensus 120 ~~~V~svafspdg~~lLasgs-----~d------~iIvwDl~t~~~~~i~~~~~h~~~V~~Vaf~P~s~Spdg~~LasGs 188 (1331)
....+.....|+|..++-+-+ .. .++++|... . .+.....+-...+.|+| |||++.++...
T Consensus 110 ~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g-~--~~~l~~~~~~~~NGla~-----SpDg~tly~aD 181 (307)
T COG3386 110 LNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDG-G--VVRLLDDDLTIPNGLAF-----SPDGKTLYVAD 181 (307)
T ss_pred cCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCC-C--EEEeecCcEEecCceEE-----CCCCCEEEEEe
Confidence 345566777888874433333 11 122444321 1 12223333455677999 78997777664
Q ss_pred -CCceeeeeehhh--heee----hhhcCCCccchhhhhHhhhccccEEEeecCCCc-eEEEEeccCCCccccccccceee
Q 000722 189 -SDGVIRVLSMIS--WKLV----RRYTGGHKGSISCLMTFMASSGEALLVSGGSDG-LLILWSADHGQDSRELVPKLSLK 260 (1331)
Q Consensus 189 -~DGtIrlWDl~t--~~~v----~~~~~gH~~~V~~vawf~~spdg~lLaSgs~Dg-tIrVWDl~tg~~~~~~~~~~~l~ 260 (1331)
..+.|.-|++.. +..- ..+...+.+..-.++ ...+|++.+++..+| .|.+|+.. ++.+.. +.
T Consensus 182 T~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~---vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~------i~ 251 (307)
T COG3386 182 TPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMA---VDADGNLWVAAVWGGGRVVRFNPD-GKLLGE------IK 251 (307)
T ss_pred CCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceE---EeCCCCEEEecccCCceEEEECCC-CcEEEE------EE
Confidence 447777777652 1111 111111223333332 455666665555554 89999988 665543 23
Q ss_pred eccCcEEEEEech
Q 000722 261 AHDGGVVAVELSR 273 (1331)
Q Consensus 261 gH~~~V~svafsp 273 (1331)
-....+++++|--
T Consensus 252 lP~~~~t~~~FgG 264 (307)
T COG3386 252 LPVKRPTNPAFGG 264 (307)
T ss_pred CCCCCCccceEeC
Confidence 3335577788854
No 383
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=85.98 E-value=15 Score=45.11 Aligned_cols=165 Identities=17% Similarity=0.189 Sum_probs=76.9
Q ss_pred CCCccccccccceeeehhhcccCCCcceEeecCCCceeeeeehhhheeehhhc-CCCccchhhhhHhh--hccccEEEee
Q 000722 156 DIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYT-GGHKGSISCLMTFM--ASSGEALLVS 232 (1331)
Q Consensus 156 ~i~~~~~h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~~~v~~~~-~gH~~~V~~vawf~--~spdg~lLaS 232 (1331)
.+.......+.+.++.| +. ...|++-..||.+++||+.. +....+. ......|.....+. +..+|-.+++
T Consensus 72 ll~~i~w~~~~iv~~~w-----t~-~e~LvvV~~dG~v~vy~~~G-~~~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt 144 (410)
T PF04841_consen 72 LLSSIPWDSGRIVGMGW-----TD-DEELVVVQSDGTVRVYDLFG-EFQFSLGEEIEEEKVLECRIFAIWFYKNGIVVLT 144 (410)
T ss_pred EeEEEEECCCCEEEEEE-----CC-CCeEEEEEcCCEEEEEeCCC-ceeechhhhccccCcccccccccccCCCCEEEEC
Confidence 33344444578899999 44 45566677999999999863 3311110 01112222221110 2335544444
Q ss_pred cCCCceEEEE-eccCCCcccccc--cccee--eeccCcEEEEEechhccCCCcEEEeecCceeEeeeccchhhhcccCCC
Q 000722 233 GGSDGLLILW-SADHGQDSRELV--PKLSL--KAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPV 307 (1331)
Q Consensus 233 gs~DgtIrVW-Dl~tg~~~~~~~--~~~~l--~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~ 307 (1331)
+ ++.+.+- +.......+... +.... ..+.....-..++. +....+....++.+.+-+-...+.
T Consensus 145 ~--~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~---~~~~~i~~~~g~~i~~i~~~~~~~------- 212 (410)
T PF04841_consen 145 G--NNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSS---DRVVEILLANGETIYIIDENSFKQ------- 212 (410)
T ss_pred C--CCeEEEEeCccccchhhccccCCCcccccccccccccceEeec---CcceEEEEecCCEEEEEEcccccc-------
Confidence 3 3333332 222111111100 00000 11111100122333 444555555566666444322211
Q ss_pred CcccccccccccCCCCCCCceeee-eecceeeeeec
Q 000722 308 PKLACHSVASWCHPRAPNLDILTC-VKDSHIWAIEH 342 (1331)
Q Consensus 308 ~~l~~H~~~V~svafspdg~lLa~-s~Dg~IWdl~~ 342 (1331)
+. ..+.+..+++||++++++. ..+|++|-+..
T Consensus 213 --i~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ss 245 (410)
T PF04841_consen 213 --ID-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSS 245 (410)
T ss_pred --cc-CCCCeEEEEECCCCCEEEEEECCCCEEEEEC
Confidence 11 1346778999999998865 45678887764
No 384
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=85.49 E-value=18 Score=46.59 Aligned_cols=72 Identities=10% Similarity=-0.003 Sum_probs=39.1
Q ss_pred hcccccchhhhhhhHHHHhhccChhhhhhhhhcCchHHHHHHh---------hhhhhHHHHHHhhhccCCCcHHHHHHHH
Q 000722 1066 LANHGELTRLSGLVTNLISLGLGREAAFSAAILGDNALMEKAW---------QDTGMLAEAVLHAHAHGRPSLKNLVEAW 1136 (1331)
Q Consensus 1066 ~~~~g~~~~l~~l~~~~~~~~~~~~~af~~~~lgd~~~~~~~l---------~~~~~~~~A~~~A~~~~~~~~~~~~~~w 1136 (1331)
++..||..++.++++.+.+.|.. -..|...++..+.....+- ....+...+...|+.+....+..+++.-
T Consensus 256 al~~~d~~~al~~l~~L~~~g~~-~~~il~~L~~~lR~Ll~lk~g~~~~~l~i~p~~~~~~~~qa~~~s~~~L~~~l~~l 334 (585)
T PRK14950 256 ALLAKDLKAALRTLNAVAADGAD-LRQFTRDLVEYLRQVMLLNSGADRSLLDLTADEKAALQKVSQIANLEALTKWVKAF 334 (585)
T ss_pred HHHcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHHhhcCccccccCCHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 34567888888888887777765 4444433333333222221 1112234455677777766666665555
Q ss_pred HH
Q 000722 1137 NK 1138 (1331)
Q Consensus 1137 ~~ 1138 (1331)
.+
T Consensus 335 ~~ 336 (585)
T PRK14950 335 SQ 336 (585)
T ss_pred HH
Confidence 43
No 385
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=85.33 E-value=1.2 Score=53.41 Aligned_cols=62 Identities=19% Similarity=0.107 Sum_probs=32.8
Q ss_pred HHHhhhhccccccchHHHHHHHHHHHhcccccccccccccccchhhhcccccchhhhhhhHHHHhh
Q 000722 1020 EFLDLIDAADATGQANIAREALKRLAAAGSVKGALQGHELRGLALRLANHGELTRLSGLVTNLISL 1085 (1331)
Q Consensus 1020 ~w~~l~~~al~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~ll~~~~g~~~~l~~l~~~~~~~ 1085 (1331)
.|..||...+.+|+++.|+++|+++-... +. ...-+..|..+|...|+.++..++.+.+...
T Consensus 182 ~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~---~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 243 (389)
T PRK11788 182 FYCELAQQALARGDLDAARALLKKALAAD-PQ---CVRASILLGDLALAQGDYAAAIEALERVEEQ 243 (389)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 45556666666677777777766663211 10 0011123445566666666666665555543
No 386
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=85.28 E-value=1.1 Score=57.74 Aligned_cols=92 Identities=9% Similarity=-0.020 Sum_probs=50.1
Q ss_pred HHHHhhhhccccccchHHHHHHHHHHHhcccc-cccccc--cccccchhhhcccccchhhhhhhHHHHhhccChhhhhh-
Q 000722 1019 KEFLDLIDAADATGQANIAREALKRLAAAGSV-KGALQG--HELRGLALRLANHGELTRLSGLVTNLISLGLGREAAFS- 1094 (1331)
Q Consensus 1019 ~~w~~l~~~al~~g~~~~a~~~~~~~~~~~~~-~~~~~~--~~~~~l~ll~~~~g~~~~l~~l~~~~~~~~~~~~~af~- 1094 (1331)
..|..+|.....+|+++.|+++|+++-....- ...... .-+.....+|...|+.++..++.+.+.+..-....++.
T Consensus 468 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~ 547 (615)
T TIGR00990 468 DVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVAT 547 (615)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 56777888888888888888888887332100 000000 00011122333457777777777776555432122222
Q ss_pred ---hh-hcCchHHHHHHhhh
Q 000722 1095 ---AA-ILGDNALMEKAWQD 1110 (1331)
Q Consensus 1095 ---~~-~lgd~~~~~~~l~~ 1110 (1331)
++ .+|+++++++.+.+
T Consensus 548 la~~~~~~g~~~eAi~~~e~ 567 (615)
T TIGR00990 548 MAQLLLQQGDVDEALKLFER 567 (615)
T ss_pred HHHHHHHccCHHHHHHHHHH
Confidence 11 66777777776654
No 387
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=85.26 E-value=17 Score=44.35 Aligned_cols=36 Identities=11% Similarity=0.185 Sum_probs=26.2
Q ss_pred CcEEEEEeecCCceeEee-cCCC----ceeeeccccceEEe
Q 000722 12 DKIVKIQLHPTHPWLVTA-DASD----HVSVWNWEHRQVIY 47 (1331)
Q Consensus 12 ~~V~~lafSPdg~~LaSg-s~DG----tV~VWD~~tg~~i~ 47 (1331)
..+....+||+|++||-+ +..| +|+|+|+.+|+.+.
T Consensus 124 ~~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~ 164 (414)
T PF02897_consen 124 VSLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLP 164 (414)
T ss_dssp EEEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEE
T ss_pred EEeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcC
Confidence 345578899999988754 3333 69999999986654
No 388
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=85.01 E-value=1.1 Score=59.27 Aligned_cols=165 Identities=13% Similarity=-0.037 Sum_probs=104.7
Q ss_pred ecccCCchhhhHHHhhh---cc---ccchhHHHHHhhcccccccccCCCcc----cc------eeeeeccccchHHHHHH
Q 000722 911 LAAYGDSVSAVKWASRL---GR---EHHDDLAQFMLGMGYATEALHLPGIS----KR------LEFDLAMQSNDLKRALQ 974 (1331)
Q Consensus 911 ~~~~~~~~~a~~~~~~i---~~---~~~~~~a~fl~~~g~~e~Al~~~~ds----~~------~~f~la~~~g~l~~a~~ 974 (1331)
....|++++|.+++... .+ ..+..++..+..+|-.++|+.+.... ++ ....+..+.|+++.|.+
T Consensus 611 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 690 (899)
T TIGR02917 611 QLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKK 690 (899)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 34558888888877652 11 22567888888888888887765321 11 12334566788888888
Q ss_pred hhhhcccccccCCCCCCCChhhhcccccchhhHHHHHHHHHHHHHHHHhhhhccccccchHHHHHHHHHHHhcccccccc
Q 000722 975 CLITMSNSRDIGQDHPGLDLNDILTLTTKKENIVEAVQGIVKFAKEFLDLIDAADATGQANIAREALKRLAAAGSVKGAL 1054 (1331)
Q Consensus 975 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~~~al~~g~~~~a~~~~~~~~~~~~~~~~~ 1054 (1331)
++..+.... ... ...|..+|......|+++.|.++|+++-... +..
T Consensus 691 ~~~~~~~~~-~~~------------------------------~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-~~~-- 736 (899)
T TIGR02917 691 IAKSLQKQH-PKA------------------------------ALGFELEGDLYLRQKDYPAAIQAYRKALKRA-PSS-- 736 (899)
T ss_pred HHHHHHhhC-cCC------------------------------hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-CCc--
Confidence 874432221 011 1567778888999999999999999873222 100
Q ss_pred cccccccchhhhcccccchhhhhhhHHHHhhccChh-hhhhh---h-hcCchHHHHHHhhhh
Q 000722 1055 QGHELRGLALRLANHGELTRLSGLVTNLISLGLGRE-AAFSA---A-ILGDNALMEKAWQDT 1111 (1331)
Q Consensus 1055 ~~~~~~~l~ll~~~~g~~~~l~~l~~~~~~~~~~~~-~af~~---~-~lgd~~~~~~~l~~~ 1111 (1331)
..+..|..+|...|+.++..++.+.+.+...... +.+.. + .+|+.+++++.+.+.
T Consensus 737 --~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 796 (899)
T TIGR02917 737 --QNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTV 796 (899)
T ss_pred --hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 1234577788888988888888777766543311 11211 1 578888888887653
No 389
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=84.98 E-value=9.3 Score=48.40 Aligned_cols=28 Identities=7% Similarity=0.080 Sum_probs=23.4
Q ss_pred ceeEeecCCCceeeeccccceEEeeecc
Q 000722 24 PWLVTADASDHVSVWNWEHRQVIYELKA 51 (1331)
Q Consensus 24 ~~LaSgs~DGtV~VWD~~tg~~i~s~~~ 51 (1331)
..++.++.|+.|.-.|.++|+.+.++..
T Consensus 121 ~~v~v~t~dg~l~ALDa~TGk~~W~~~~ 148 (527)
T TIGR03075 121 GKVFFGTLDARLVALDAKTGKVVWSKKN 148 (527)
T ss_pred CEEEEEcCCCEEEEEECCCCCEEeeccc
Confidence 4567778899999999999999988764
No 390
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.82 E-value=19 Score=41.06 Aligned_cols=128 Identities=16% Similarity=0.083 Sum_probs=72.3
Q ss_pred CCCCceEEEEEeecceeEeeeecccCCCCCccccccccceeeehhhcccCCCcceEeecCCCc-eeeeeehhhheeehhh
Q 000722 129 STKGRHFLVICCVNKAIFLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDG-VIRVLSMISWKLVRRY 207 (1331)
Q Consensus 129 spdg~~lLasgs~d~iIvwDl~t~~~~~i~~~~~h~~~V~~Vaf~P~s~Spdg~~LasGs~DG-tIrlWDl~t~~~v~~~ 207 (1331)
.+||+.-+++.+..+.++.-..- ...-..|+|||. ...-++.+-.-| ...++|..+.+....+
T Consensus 44 ~~dgs~g~a~~~eaGk~v~~~~l------------paR~Hgi~~~p~----~~ravafARrPGtf~~vfD~~~~~~pv~~ 107 (366)
T COG3490 44 ARDGSFGAATLSEAGKIVFATAL------------PARGHGIAFHPA----LPRAVAFARRPGTFAMVFDPNGAQEPVTL 107 (366)
T ss_pred ccCCceeEEEEccCCceeeeeec------------ccccCCeecCCC----CcceEEEEecCCceEEEECCCCCcCcEEE
Confidence 45777566666666655442111 122233666542 123344443333 3557888776554433
Q ss_pred cC---CCccchhhhhHhhhccccEEEeecCCC-----ceEEEEeccCCCccccccccceeeeccCcEEEEEechhccCCC
Q 000722 208 TG---GHKGSISCLMTFMASSGEALLVSGGSD-----GLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSP 279 (1331)
Q Consensus 208 ~~---gH~~~V~~vawf~~spdg~lLaSgs~D-----gtIrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~ 279 (1331)
.. .| -+-.. .|++||.+|...-.| |.|-|||.+.+- ...-.+..|.-+...+.|.+ |++
T Consensus 108 ~s~~~RH-fyGHG----vfs~dG~~LYATEndfd~~rGViGvYd~r~~f-----qrvgE~~t~GiGpHev~lm~---DGr 174 (366)
T COG3490 108 VSQEGRH-FYGHG----VFSPDGRLLYATENDFDPNRGVIGVYDAREGF-----QRVGEFSTHGIGPHEVTLMA---DGR 174 (366)
T ss_pred ecccCce-eeccc----ccCCCCcEEEeecCCCCCCCceEEEEeccccc-----ceecccccCCcCcceeEEec---CCc
Confidence 20 11 00011 279999999876444 789999998541 12334567777778899998 888
Q ss_pred cEEEee
Q 000722 280 QLITIG 285 (1331)
Q Consensus 280 ~LaSgs 285 (1331)
.++.+.
T Consensus 175 tlvvan 180 (366)
T COG3490 175 TLVVAN 180 (366)
T ss_pred EEEEeC
Confidence 887653
No 391
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=84.79 E-value=1.3 Score=57.15 Aligned_cols=162 Identities=9% Similarity=-0.060 Sum_probs=99.7
Q ss_pred cCCchhhhHHHhh-hcc--------ccchhHHHHHhhcccccccccCCCcc----cc---eeeee---ccccchHHHHHH
Q 000722 914 YGDSVSAVKWASR-LGR--------EHHDDLAQFMLGMGYATEALHLPGIS----KR---LEFDL---AMQSNDLKRALQ 974 (1331)
Q Consensus 914 ~~~~~~a~~~~~~-i~~--------~~~~~~a~fl~~~g~~e~Al~~~~ds----~~---~~f~l---a~~~g~l~~a~~ 974 (1331)
.++|++|+++... +.. ..+..++.++..+|-+++|+...... |+ ..+.+ .+++|+++.|++
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~ 386 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEE 386 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 3677888877665 211 12566677777788877777654211 22 11222 347788888888
Q ss_pred hhhhcccccccCCCCCCCChhhhcccccchhhHHHHHHHHHHHHHHHHhhhhccccccchHHHHHHHHHHHhcccccccc
Q 000722 975 CLITMSNSRDIGQDHPGLDLNDILTLTTKKENIVEAVQGIVKFAKEFLDLIDAADATGQANIAREALKRLAAAGSVKGAL 1054 (1331)
Q Consensus 975 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~~~al~~g~~~~a~~~~~~~~~~~~~~~~~ 1054 (1331)
.....-.. +.+. ...|..+|......|+++.|.++|+++-... +....
T Consensus 387 ~~~~al~~-~p~~------------------------------~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~ 434 (615)
T TIGR00990 387 DFDKALKL-NSED------------------------------PDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIF 434 (615)
T ss_pred HHHHHHHh-CCCC------------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHH
Confidence 76322111 1111 1678889999999999999999999984332 11111
Q ss_pred cccccccchhhhcccccchhhhhhhHHHHhhccChhh-hh-----hhhhcCchHHHHHHhhhh
Q 000722 1055 QGHELRGLALRLANHGELTRLSGLVTNLISLGLGREA-AF-----SAAILGDNALMEKAWQDT 1111 (1331)
Q Consensus 1055 ~~~~~~~l~ll~~~~g~~~~l~~l~~~~~~~~~~~~~-af-----~~~~lgd~~~~~~~l~~~ 1111 (1331)
-+..|..+|...|+.+....+.+.+...... +. ++ ...-+|+++++++.+.+.
T Consensus 435 ---~~~~la~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~A 493 (615)
T TIGR00990 435 ---SHIQLGVTQYKEGSIASSMATFRRCKKNFPE-APDVYNYYGELLLDQNKFDEAIEKFDTA 493 (615)
T ss_pred ---HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 1235677888889999888888887765432 21 11 111677888887766553
No 392
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=84.77 E-value=1.6 Score=36.34 Aligned_cols=33 Identities=6% Similarity=0.082 Sum_probs=28.8
Q ss_pred cCcEEEEEechhccCCCcEEEeecCceeEeeeccchh
Q 000722 263 DGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFK 299 (1331)
Q Consensus 263 ~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~ 299 (1331)
...|..++|+| ..++|+.++.||.|.+|++ +++
T Consensus 11 ~~~v~~~~w~P---~mdLiA~~t~~g~v~v~Rl-~~q 43 (47)
T PF12894_consen 11 PSRVSCMSWCP---TMDLIALGTEDGEVLVYRL-NWQ 43 (47)
T ss_pred CCcEEEEEECC---CCCEEEEEECCCeEEEEEC-CCc
Confidence 34599999999 8899999999999999998 444
No 393
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=84.15 E-value=0.47 Score=54.63 Aligned_cols=85 Identities=19% Similarity=0.187 Sum_probs=21.7
Q ss_pred HHHhhhhccccccchHHHHHHHHHHHh-cccccccccccccccchhhhcccccchhhhhhhHHHHhhccCh-hhhhh-h-
Q 000722 1020 EFLDLIDAADATGQANIAREALKRLAA-AGSVKGALQGHELRGLALRLANHGELTRLSGLVTNLISLGLGR-EAAFS-A- 1095 (1331)
Q Consensus 1020 ~w~~l~~~al~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~l~ll~~~~g~~~~l~~l~~~~~~~~~~~-~~af~-~- 1095 (1331)
...+|+.. +..++.+.|.+.+.++-. ++++ .-+..++-+|...|+.+++..+++.+....... +..|. .
T Consensus 80 ~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~------~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 152 (280)
T PF13429_consen 80 DYERLIQL-LQDGDPEEALKLAEKAYERDGDP------RYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLAL 152 (280)
T ss_dssp ---------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHH
T ss_pred cccccccc-ccccccccccccccccccccccc------chhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHH
Confidence 44555555 555665555443332200 0111 023344445556666666666666655433110 11111 1
Q ss_pred ---h-hcCchHHHHHHhhhh
Q 000722 1096 ---A-ILGDNALMEKAWQDT 1111 (1331)
Q Consensus 1096 ---~-~lgd~~~~~~~l~~~ 1111 (1331)
+ -.|+.+++++.+.+.
T Consensus 153 a~~~~~~G~~~~A~~~~~~a 172 (280)
T PF13429_consen 153 AEIYEQLGDPDKALRDYRKA 172 (280)
T ss_dssp HHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHH
Confidence 1 456666666666554
No 394
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.09 E-value=7.7 Score=47.39 Aligned_cols=135 Identities=9% Similarity=0.035 Sum_probs=84.7
Q ss_pred eEeecCCCceeeeeehhhheeehhhcCCCccchhhhhHhhhccccE--E-----EeecCCCceEEEEeccCCCccccccc
Q 000722 183 LVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEA--L-----LVSGGSDGLLILWSADHGQDSRELVP 255 (1331)
Q Consensus 183 ~LasGs~DGtIrlWDl~t~~~v~~~~~gH~~~V~~vawf~~spdg~--l-----LaSgs~DgtIrVWDl~tg~~~~~~~~ 255 (1331)
++.++.....++-.|++.|+.+.... -|.. |+-+. +.|+.. . =+.|-.|..|.-||++-...- .
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk-~~~d-i~mv~---~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~----k 418 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWK-FEDD-INMVD---ITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN----K 418 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEee-ccCC-cceee---ccCCcchhcccccccEEeecCCceEEecccccCcc----e
Confidence 34556666778888999999988775 3333 44443 333321 1 223567888999998743210 0
Q ss_pred cceeeecc----CcEEEEEechhccCCCcEEEeecCceeEeeeccchhhhcccCCCCcccccccccccCCCCCCCceeee
Q 000722 256 KLSLKAHD----GGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDILTC 331 (1331)
Q Consensus 256 ~~~l~gH~----~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg~lLa~ 331 (1331)
+...++|. ....|.+-. ...+|++||.+|.||+||- .+..-.+ -+++-...|..+..+.+|+.|.|
T Consensus 419 l~~~q~kqy~~k~nFsc~aTT----~sG~IvvgS~~GdIRLYdr-i~~~AKT-----AlPgLG~~I~hVdvtadGKwil~ 488 (644)
T KOG2395|consen 419 LAVVQSKQYSTKNNFSCFATT----ESGYIVVGSLKGDIRLYDR-IGRRAKT-----ALPGLGDAIKHVDVTADGKWILA 488 (644)
T ss_pred eeeeeccccccccccceeeec----CCceEEEeecCCcEEeehh-hhhhhhh-----cccccCCceeeEEeeccCcEEEE
Confidence 11112232 224444443 3459999999999999996 4443333 25777788888999999998876
Q ss_pred eecce
Q 000722 332 VKDSH 336 (1331)
Q Consensus 332 s~Dg~ 336 (1331)
..+..
T Consensus 489 Tc~ty 493 (644)
T KOG2395|consen 489 TCKTY 493 (644)
T ss_pred ecccE
Confidence 66655
No 395
>PHA02713 hypothetical protein; Provisional
Probab=83.89 E-value=8.9 Score=48.93 Aligned_cols=144 Identities=11% Similarity=0.082 Sum_probs=72.5
Q ss_pred CCceEEEEEeec-------ceeEeeeecccCCCCCccccccccceeeehhhcccCCCcceEeecCCCc-----eeeeeeh
Q 000722 131 KGRHFLVICCVN-------KAIFLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDG-----VIRVLSM 198 (1331)
Q Consensus 131 dg~~lLasgs~d-------~iIvwDl~t~~~~~i~~~~~h~~~V~~Vaf~P~s~Spdg~~LasGs~DG-----tIrlWDl 198 (1331)
++. +++.|+.+ .+.++|..+.....+..+.........+.+ ++...+.|+.++ ++..||.
T Consensus 303 ~~~-IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~-------~g~IYviGG~~~~~~~~sve~Ydp 374 (557)
T PHA02713 303 DNE-IIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVI-------DDTIYAIGGQNGTNVERTIECYTM 374 (557)
T ss_pred CCE-EEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEE-------CCEEEEECCcCCCCCCceEEEEEC
Confidence 344 66666642 122557666543333333222223333444 677778888764 4778998
Q ss_pred hhh--eeehhhcCCCccchhhhhHhhhccccEEEeecCCCc-----------------------eEEEEeccCCCccccc
Q 000722 199 ISW--KLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDG-----------------------LLILWSADHGQDSREL 253 (1331)
Q Consensus 199 ~t~--~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~Dg-----------------------tIrVWDl~tg~~~~~~ 253 (1331)
.+. ..+..+. +...-.++ ..-++.+.+.|+.++ .+..||..+.+..
T Consensus 375 ~~~~W~~~~~mp--~~r~~~~~----~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~--- 445 (557)
T PHA02713 375 GDDKWKMLPDMP--IALSSYGM----CVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWE--- 445 (557)
T ss_pred CCCeEEECCCCC--cccccccE----EEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEe---
Confidence 754 3333332 11111111 123678888887653 4677887765421
Q ss_pred cccceeeeccCcEEEEEechhccCCCcEEEeecC------ceeEeeeccc
Q 000722 254 VPKLSLKAHDGGVVAVELSRVMGGSPQLITIGAD------KTLAIWDTVS 297 (1331)
Q Consensus 254 ~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~D------g~IrIWDl~t 297 (1331)
....+...... .+++.. ++.+.+.||.+ ..+..||..+
T Consensus 446 -~v~~m~~~r~~-~~~~~~----~~~IYv~GG~~~~~~~~~~ve~Ydp~~ 489 (557)
T PHA02713 446 -TLPNFWTGTIR-PGVVSH----KDDIYVVCDIKDEKNVKTCIFRYNTNT 489 (557)
T ss_pred -ecCCCCccccc-CcEEEE----CCEEEEEeCCCCCCccceeEEEecCCC
Confidence 11122111111 123332 46677777754 2466788776
No 396
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=83.48 E-value=1.7 Score=51.07 Aligned_cols=58 Identities=17% Similarity=0.342 Sum_probs=38.5
Q ss_pred EEEEeccCCCccccccccceeeeccCcEEEEEechhccCCCcEEEe-ecCceeEeeeccchhhhcccC
Q 000722 239 LILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITI-GADKTLAIWDTVSFKELRRIK 305 (1331)
Q Consensus 239 IrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSg-s~Dg~IrIWDl~t~~~l~~~~ 305 (1331)
|-++|+.+++.+..+ .. ...+.+|..+. ++.++|++. ..++.+.+||..+|+.+++++
T Consensus 271 VWv~D~~t~krv~Ri------~l-~~~~~Si~Vsq--d~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~ 329 (342)
T PF06433_consen 271 VWVYDLKTHKRVARI------PL-EHPIDSIAVSQ--DDKPLLYALSAGDGTLDVYDAATGKLVRSIE 329 (342)
T ss_dssp EEEEETTTTEEEEEE------EE-EEEESEEEEES--SSS-EEEEEETTTTEEEEEETTT--EEEEE-
T ss_pred EEEEECCCCeEEEEE------eC-CCccceEEEcc--CCCcEEEEEcCCCCeEEEEeCcCCcEEeehh
Confidence 556677777765542 21 23477899988 467788765 458999999999999887754
No 397
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=82.16 E-value=7.9 Score=49.48 Aligned_cols=143 Identities=16% Similarity=0.192 Sum_probs=80.4
Q ss_pred eEEEEEeec-ce-----e-EeeeecccCCCCCccccccccceeeehhhcccCCCcceEeecCCCce-----eeeeehhhh
Q 000722 134 HFLVICCVN-KA-----I-FLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGV-----IRVLSMISW 201 (1331)
Q Consensus 134 ~lLasgs~d-~i-----I-vwDl~t~~~~~i~~~~~h~~~V~~Vaf~P~s~Spdg~~LasGs~DGt-----IrlWDl~t~ 201 (1331)
.++++|+.+ +. + ++|..+.+...+..+............ +|...++|+.||. |-.||..+.
T Consensus 334 ~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l-------~g~iYavGG~dg~~~l~svE~YDp~~~ 406 (571)
T KOG4441|consen 334 KLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVL-------DGKLYAVGGFDGEKSLNSVECYDPVTN 406 (571)
T ss_pred EEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEE-------CCEEEEEeccccccccccEEEecCCCC
Confidence 377888777 21 1 457776654444444444444444444 6888999998874 667777653
Q ss_pred --eeehhhcC-CCccchhhhhHhhhccccEEEeecCCCc------eEEEEeccCCCccccccccceeeeccCcEEEEEec
Q 000722 202 --KLVRRYTG-GHKGSISCLMTFMASSGEALLVSGGSDG------LLILWSADHGQDSRELVPKLSLKAHDGGVVAVELS 272 (1331)
Q Consensus 202 --~~v~~~~~-gH~~~V~~vawf~~spdg~lLaSgs~Dg------tIrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafs 272 (1331)
..+..... .....+ ..-+|.+.+.||.|+ ++..||..+++... ...+..-.... .++..
T Consensus 407 ~W~~va~m~~~r~~~gv-------~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~----~~~M~~~R~~~-g~a~~ 474 (571)
T KOG4441|consen 407 KWTPVAPMLTRRSGHGV-------AVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTL----IAPMNTRRSGF-GVAVL 474 (571)
T ss_pred cccccCCCCcceeeeEE-------EEECCEEEEEcCcCCCccccceEEEEcCCCCceee----cCCcccccccc-eEEEE
Confidence 33332221 111111 233788889988664 46788888765322 22222111112 23333
Q ss_pred hhccCCCcEEEeecCce-----eEeeeccchh
Q 000722 273 RVMGGSPQLITIGADKT-----LAIWDTVSFK 299 (1331)
Q Consensus 273 p~~~dg~~LaSgs~Dg~-----IrIWDl~t~~ 299 (1331)
++.+.+.||.|+. |..||..+.+
T Consensus 475 ----~~~iYvvGG~~~~~~~~~VE~ydp~~~~ 502 (571)
T KOG4441|consen 475 ----NGKIYVVGGFDGTSALSSVERYDPETNQ 502 (571)
T ss_pred ----CCEEEEECCccCCCccceEEEEcCCCCc
Confidence 5678888888773 6667776543
No 398
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=81.85 E-value=2.1 Score=48.59 Aligned_cols=114 Identities=10% Similarity=0.076 Sum_probs=72.1
Q ss_pred CcEEEEEeecCCceeEeecCCC--ceeeeccccceEEeeeccCCcccchhhhhhhhhhcccccccCCCCcccccCCceeE
Q 000722 12 DKIVKIQLHPTHPWLVTADASD--HVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRGGSVKQ 89 (1331)
Q Consensus 12 ~~V~~lafSPdg~~LaSgs~DG--tV~VWD~~tg~~i~s~~~~~~~~i~~vspdg~~Lasgs~d~~g~~l~~l~gg~V~s 89 (1331)
.-..++.|..+|.++-+.+.-| .|+.+|+.+|+.+....... +.+..| .++.++.++.
T Consensus 45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~-----------~~FgEG---------it~~~d~l~q 104 (264)
T PF05096_consen 45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPP-----------RYFGEG---------ITILGDKLYQ 104 (264)
T ss_dssp -EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TT-----------T--EEE---------EEEETTEEEE
T ss_pred ccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCc-----------ccccee---------EEEECCEEEE
Confidence 4467788878888888887776 89999999998877665332 122222 1234678999
Q ss_pred EeeecchhhHHHHhhhccccccCCcccccccccccCCCCCCCCceEEEEEeecceeEeeeeccc
Q 000722 90 VNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFLDLVTMR 153 (1331)
Q Consensus 90 Vaf~DgtIrvWdl~tg~~l~~~~~~~~~~~~~~V~svafspdg~~lLasgs~d~iIvwDl~t~~ 153 (1331)
+.|.++..-+||..+-+.+... .. ...=+.++ .+++.++.+-+.+.+..+|..+.+
T Consensus 105 LTWk~~~~f~yd~~tl~~~~~~----~y--~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~ 160 (264)
T PF05096_consen 105 LTWKEGTGFVYDPNTLKKIGTF----PY--PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFK 160 (264)
T ss_dssp EESSSSEEEEEETTTTEEEEEE----E---SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-S
T ss_pred EEecCCeEEEEccccceEEEEE----ec--CCcceEEE--cCCCEEEEECCccceEEECCcccc
Confidence 9999999999998766543211 11 11113333 466668888888888888877643
No 399
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=81.27 E-value=4.3 Score=48.24 Aligned_cols=104 Identities=18% Similarity=0.254 Sum_probs=69.5
Q ss_pred eeecccCCchhhhHHHhhhccc-c--------chhHHHHHh-------hcccccccccCCCc---ccceeeeeccccchH
Q 000722 909 RCLAAYGDSVSAVKWASRLGRE-H--------HDDLAQFML-------GMGYATEALHLPGI---SKRLEFDLAMQSNDL 969 (1331)
Q Consensus 909 ~~~~~~~~~~~a~~~~~~i~~~-~--------~~~~a~fl~-------~~g~~e~Al~~~~d---s~~~~f~la~~~g~l 969 (1331)
-.++-+||++.|++++.-+... . .-.+-+||+ .+-|.++||.+-.- ....+=+++...|+|
T Consensus 427 ~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~ 506 (840)
T KOG2003|consen 427 GELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDL 506 (840)
T ss_pred HHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcH
Confidence 4667889999999988763221 1 123346774 56788888876432 123456789999999
Q ss_pred HHHHHhhhhccccccc-CCCCCCCChhhhcccccchhhHHHHHHHHHHHHHHHHhhhhccccccchHHHHHHHHHH
Q 000722 970 KRALQCLITMSNSRDI-GQDHPGLDLNDILTLTTKKENIVEAVQGIVKFAKEFLDLIDAADATGQANIAREALKRL 1044 (1331)
Q Consensus 970 ~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~~~al~~g~~~~a~~~~~~~ 1044 (1331)
+.|.+.- ++. ..+ + .-.+--..+|=.|.++|+++.|.+||-++
T Consensus 507 dka~~~y------keal~nd-------------------a-------sc~ealfniglt~e~~~~ldeald~f~kl 550 (840)
T KOG2003|consen 507 DKAAEFY------KEALNND-------------------A-------SCTEALFNIGLTAEALGNLDEALDCFLKL 550 (840)
T ss_pred HHHHHHH------HHHHcCc-------------------h-------HHHHHHHHhcccHHHhcCHHHHHHHHHHH
Confidence 9999875 321 111 1 01123345677889999999999999988
No 400
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=80.02 E-value=5.2 Score=47.11 Aligned_cols=180 Identities=13% Similarity=0.132 Sum_probs=89.8
Q ss_pred ceeeeeehhhheeehhhcCCCccchhhhhHhhhcc----ccEEEeecCC----------CceEEEEeccCC-Cccccccc
Q 000722 191 GVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASS----GEALLVSGGS----------DGLLILWSADHG-QDSRELVP 255 (1331)
Q Consensus 191 GtIrlWDl~t~~~v~~~~~gH~~~V~~vawf~~sp----dg~lLaSgs~----------DgtIrVWDl~tg-~~~~~~~~ 255 (1331)
..|++.|..+++.+..+.-.....+++++.+.+.. ...+|+.|.. .|.|.++++... ....++..
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 35778888777766555323444555554222332 2466766533 299999999884 11111212
Q ss_pred cceeeeccCcEEEEEechhccCCCcEEEeecCceeEeeeccchhhhcccCCCCccccccc--ccccCCCCCCCceeeeee
Q 000722 256 KLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSV--ASWCHPRAPNLDILTCVK 333 (1331)
Q Consensus 256 ~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~--~V~svafspdg~lLa~s~ 333 (1331)
... ....++|++++-.. +. |+.+ ..+.|.+|++...+.+.. ...+.. .+.++... +.++..|.
T Consensus 82 i~~-~~~~g~V~ai~~~~----~~-lv~~-~g~~l~v~~l~~~~~l~~------~~~~~~~~~i~sl~~~--~~~I~vgD 146 (321)
T PF03178_consen 82 IHS-TEVKGPVTAICSFN----GR-LVVA-VGNKLYVYDLDNSKTLLK------KAFYDSPFYITSLSVF--KNYILVGD 146 (321)
T ss_dssp EEE-EEESS-EEEEEEET----TE-EEEE-ETTEEEEEEEETTSSEEE------EEEE-BSSSEEEEEEE--TTEEEEEE
T ss_pred EEE-EeecCcceEhhhhC----CE-EEEe-ecCEEEEEEccCcccchh------hheecceEEEEEEecc--ccEEEEEE
Confidence 222 34578899998763 44 3333 358999999987772211 111212 23333332 33443332
Q ss_pred --cc-eeeeeecCccccccccccccccCCCcccccc-ccceEEEEEEeccCCccEeeecceeEEEEeecCCC
Q 000722 334 --DS-HIWAIEHPTYSALTRPLCELSSLVPPQVLAH-HKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPR 401 (1331)
Q Consensus 334 --Dg-~IWdl~~~~~~~l~~~~~~~~~~~~~~~l~~-h~~~~I~~la~sp~~~~lLAtGs~DG~Il~VWDlr 401 (1331)
++ .++.++.... .+ ..+.. .....++++.+-+++ ..+++++.+|.+ .++...
T Consensus 147 ~~~sv~~~~~~~~~~-~l-------------~~va~d~~~~~v~~~~~l~d~-~~~i~~D~~gnl-~~l~~~ 202 (321)
T PF03178_consen 147 AMKSVSLLRYDEENN-KL-------------ILVARDYQPRWVTAAEFLVDE-DTIIVGDKDGNL-FVLRYN 202 (321)
T ss_dssp SSSSEEEEEEETTTE--E-------------EEEEEESS-BEEEEEEEE-SS-SEEEEEETTSEE-EEEEE-
T ss_pred cccCEEEEEEEccCC-EE-------------EEEEecCCCccEEEEEEecCC-cEEEEEcCCCeE-EEEEEC
Confidence 22 2333332100 00 01111 112267888887644 478888888987 566653
No 401
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=79.98 E-value=8.2 Score=46.19 Aligned_cols=35 Identities=9% Similarity=0.169 Sum_probs=27.5
Q ss_pred CCcEEEEEeecCCceeEeecCCCceeeeccccceEE
Q 000722 11 NDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVI 46 (1331)
Q Consensus 11 s~~V~~lafSPdg~~LaSgs~DGtV~VWD~~tg~~i 46 (1331)
...+....|||+|++++-. .++.|.+++..++...
T Consensus 42 ~~~~~~~~~sP~g~~~~~v-~~~nly~~~~~~~~~~ 76 (353)
T PF00930_consen 42 PPKLQDAKWSPDGKYIAFV-RDNNLYLRDLATGQET 76 (353)
T ss_dssp ETTBSEEEE-SSSTEEEEE-ETTEEEEESSTTSEEE
T ss_pred ccccccceeecCCCeeEEE-ecCceEEEECCCCCeE
Confidence 4568889999999999887 4678999998877443
No 402
>PRK12370 invasion protein regulator; Provisional
Probab=79.80 E-value=1.7 Score=55.35 Aligned_cols=40 Identities=13% Similarity=-0.003 Sum_probs=26.3
Q ss_pred cccCCchhhhHHHhh---hccc---cchhHHHHHhhcccccccccC
Q 000722 912 AAYGDSVSAVKWASR---LGRE---HHDDLAQFMLGMGYATEALHL 951 (1331)
Q Consensus 912 ~~~~~~~~a~~~~~~---i~~~---~~~~~a~fl~~~g~~e~Al~~ 951 (1331)
...|++++|++.+.+ +.+. .|..++..+..+|.+++|+..
T Consensus 349 ~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~ 394 (553)
T PRK12370 349 TIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQT 394 (553)
T ss_pred HHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 356888888887766 3333 266677777777777766544
No 403
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=79.48 E-value=4.4 Score=51.62 Aligned_cols=109 Identities=11% Similarity=0.073 Sum_probs=71.1
Q ss_pred CcceEeecCCCceeeeeehhhheeehhhcCCCccchhhhhHhhhccccEEEeecCCCceEEEEeccCCCc---ccccccc
Q 000722 180 DVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQD---SRELVPK 256 (1331)
Q Consensus 180 dg~~LasGs~DGtIrlWDl~t~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrVWDl~tg~~---~~~~~~~ 256 (1331)
-++..++-++...+.|||.+.+.....-.-...+.|.++.|. +.|+++.+++.|..+.|.++.-..... ...+.+.
T Consensus 40 ~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWt-st~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i 118 (631)
T PF12234_consen 40 IKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWT-STPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPI 118 (631)
T ss_pred cCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceee-ecCCCCEEEEEEcCcEEEEEEccchhhhcCCccccee
Confidence 355555555667899999988765433222457899999986 889999999999999999985421110 1112222
Q ss_pred --ceeeecc-CcEEEEEechhccCCCcEEEeecCceeEeee
Q 000722 257 --LSLKAHD-GGVVAVELSRVMGGSPQLITIGADKTLAIWD 294 (1331)
Q Consensus 257 --~~l~gH~-~~V~svafsp~~~dg~~LaSgs~Dg~IrIWD 294 (1331)
..+..|+ .+|.+..|.+ +|.+++.+ ++.+.|+|
T Consensus 119 ~~i~i~~~T~h~Igds~Wl~---~G~LvV~s--GNqlfv~d 154 (631)
T PF12234_consen 119 RKIDISSHTPHPIGDSIWLK---DGTLVVGS--GNQLFVFD 154 (631)
T ss_pred EEEEeecCCCCCccceeEec---CCeEEEEe--CCEEEEEC
Confidence 2234444 5788999987 66555443 46777876
No 404
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=78.96 E-value=27 Score=42.80 Aligned_cols=60 Identities=18% Similarity=0.174 Sum_probs=36.3
Q ss_pred CcceEeecCCCceeeeeehhhheeehhhcCCCccchhhhhHhhhccccEEEeecCCCceEEEEeccCC
Q 000722 180 DVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHG 247 (1331)
Q Consensus 180 dg~~LasGs~DGtIrlWDl~t~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrVWDl~tg 247 (1331)
+....+....++.+.+.+-...+. + ...+++..++ .||++++++.-..+|.+.+....-.
T Consensus 189 ~~~~~i~~~~g~~i~~i~~~~~~~---i--~~~~~i~~ia---vSpng~~iAl~t~~g~l~v~ssDf~ 248 (410)
T PF04841_consen 189 DRVVEILLANGETIYIIDENSFKQ---I--DSDGPIIKIA---VSPNGKFIALFTDSGNLWVVSSDFS 248 (410)
T ss_pred CcceEEEEecCCEEEEEEcccccc---c--cCCCCeEEEE---ECCCCCEEEEEECCCCEEEEECccc
Confidence 334444444555555443322111 1 2235677776 8999999999889999888765433
No 405
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=78.89 E-value=2.3 Score=59.05 Aligned_cols=164 Identities=22% Similarity=0.232 Sum_probs=104.7
Q ss_pred ccCCchhhhHHHhhhccccc----------------hhHHHHHhhcccccccccCCCcc---cceeeee---ccccchHH
Q 000722 913 AYGDSVSAVKWASRLGREHH----------------DDLAQFMLGMGYATEALHLPGIS---KRLEFDL---AMQSNDLK 970 (1331)
Q Consensus 913 ~~~~~~~a~~~~~~i~~~~~----------------~~~a~fl~~~g~~e~Al~~~~ds---~~~~f~l---a~~~g~l~ 970 (1331)
..+++++|++++..+++... ..+|.-|..+|..++|+.+.... +...+.| .++.|+++
T Consensus 541 ~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~ 620 (1157)
T PRK11447 541 GSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYA 620 (1157)
T ss_pred hCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHH
Confidence 35788888888777654321 23456677788888887765421 2333333 35678888
Q ss_pred HHHHhhhhcccccccCCCCCCCChhhhcccccchhhHHHHHHHHHHHHHHHHhhhhccccccchHHHHHHHHHHHhcccc
Q 000722 971 RALQCLITMSNSRDIGQDHPGLDLNDILTLTTKKENIVEAVQGIVKFAKEFLDLIDAADATGQANIAREALKRLAAAGSV 1050 (1331)
Q Consensus 971 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~~~al~~g~~~~a~~~~~~~~~~~~~ 1050 (1331)
.|+++...+... +.+.. .-|..|+......|+.+.|+++|+++-... +
T Consensus 621 ~A~~~y~~al~~-~P~~~------------------------------~a~~~la~~~~~~g~~~eA~~~l~~ll~~~-p 668 (1157)
T PRK11447 621 AARAAYQRVLTR-EPGNA------------------------------DARLGLIEVDIAQGDLAAARAQLAKLPATA-N 668 (1157)
T ss_pred HHHHHHHHHHHh-CCCCH------------------------------HHHHHHHHHHHHCCCHHHHHHHHHHHhccC-C
Confidence 888887332211 11111 578889999999999999999999884221 0
Q ss_pred cccccccccccchhhhcccccchhhhhhhHHHHhhccChh----hh--h-----hhhhcCchHHHHHHhhhh
Q 000722 1051 KGALQGHELRGLALRLANHGELTRLSGLVTNLISLGLGRE----AA--F-----SAAILGDNALMEKAWQDT 1111 (1331)
Q Consensus 1051 ~~~~~~~~~~~l~ll~~~~g~~~~l~~l~~~~~~~~~~~~----~a--f-----~~~~lgd~~~~~~~l~~~ 1111 (1331)
... .-...+..+|...|+.++..++.+.+........ .+ + ...-.|+.+++++.|.+.
T Consensus 669 ~~~---~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~A 737 (1157)
T PRK11447 669 DSL---NTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDA 737 (1157)
T ss_pred CCh---HHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 000 0124567788899999999999888876532101 11 1 112678999999888765
No 406
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=78.88 E-value=2.3 Score=43.88 Aligned_cols=26 Identities=27% Similarity=0.075 Sum_probs=23.5
Q ss_pred HHHHhhhhccccccchHHHHHHHHHH
Q 000722 1019 KEFLDLIDAADATGQANIAREALKRL 1044 (1331)
Q Consensus 1019 ~~w~~l~~~al~~g~~~~a~~~~~~~ 1044 (1331)
..|..+||.++++|+.+.|+.+|+++
T Consensus 119 ~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 119 LAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 56777899999999999999999976
No 407
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=78.31 E-value=20 Score=41.03 Aligned_cols=103 Identities=12% Similarity=-0.054 Sum_probs=62.5
Q ss_pred ccCCCCCCCCceEEEEEeeccee--EeeeecccCCCCCccccccccceeeehhhcccCCCcceEeecCC-----Cceeee
Q 000722 123 FASPPPSTKGRHFLVICCVNKAI--FLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSS-----DGVIRV 195 (1331)
Q Consensus 123 V~svafspdg~~lLasgs~d~iI--vwDl~t~~~~~i~~~~~h~~~V~~Vaf~P~s~Spdg~~LasGs~-----DGtIrl 195 (1331)
...+.|+|.-++-++.+-.-+.. ++|++..+...+..........-.-.| |+||.+|...-+ .|.|-|
T Consensus 70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvf-----s~dG~~LYATEndfd~~rGViGv 144 (366)
T COG3490 70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVF-----SPDGRLLYATENDFDPNRGVIGV 144 (366)
T ss_pred cCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeeccccc-----CCCCcEEEeecCCCCCCCceEEE
Confidence 34788999888777777766655 668876543211111111222223346 789999887643 378999
Q ss_pred eehhhh-eeehhhcCCCccchhhhhHhhhccccEEEeecC
Q 000722 196 LSMISW-KLVRRYTGGHKGSISCLMTFMASSGEALLVSGG 234 (1331)
Q Consensus 196 WDl~t~-~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs 234 (1331)
||.+.+ +.+-.+. .|.-.-..+. ..+||+.++.+.
T Consensus 145 Yd~r~~fqrvgE~~-t~GiGpHev~---lm~DGrtlvvan 180 (366)
T COG3490 145 YDAREGFQRVGEFS-THGIGPHEVT---LMADGRTLVVAN 180 (366)
T ss_pred Eecccccceecccc-cCCcCcceeE---EecCCcEEEEeC
Confidence 998743 3444554 5554444554 467888887643
No 408
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=78.16 E-value=1.6 Score=55.73 Aligned_cols=120 Identities=9% Similarity=0.034 Sum_probs=77.3
Q ss_pred ccccccceeeehhhcccCCCcceEeecCCCceeeeeehh--hheeehhh----cCCCccchhhhhHhhhccccEEEeecC
Q 000722 161 ELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMI--SWKLVRRY----TGGHKGSISCLMTFMASSGEALLVSGG 234 (1331)
Q Consensus 161 ~~h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~--t~~~v~~~----~~gH~~~V~~vawf~~spdg~lLaSgs 234 (1331)
++-.+.+-.+.|- +-+...+. -.-|.+.|||+. .|+....+ ......++.-+.|+.+-++.-++..+-
T Consensus 129 kgf~G~v~dl~fa----h~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~ 202 (1283)
T KOG1916|consen 129 KGFPGGVGDLQFA----HTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGL 202 (1283)
T ss_pred hcCCCCccccccc----ccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeecc
Confidence 4446677778872 22222222 334678899886 34332222 223445556677887888888888888
Q ss_pred CCceEEEEeccCCCccccccccceeeeccCcEEEEEe-----------chhccCCCcEEEeecCceeEeeecc
Q 000722 235 SDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVEL-----------SRVMGGSPQLITIGADKTLAIWDTV 296 (1331)
Q Consensus 235 ~DgtIrVWDl~tg~~~~~~~~~~~l~gH~~~V~svaf-----------sp~~~dg~~LaSgs~Dg~IrIWDl~ 296 (1331)
.+++|++.+.++... .-+.+|..++..++| +| ||..++..+.||.++.|.+.
T Consensus 203 ~~~~i~lL~~~ra~~-------~l~rsHs~~~~d~a~~~~g~~~l~~lSp---DGtv~a~a~~dG~v~f~Qiy 265 (1283)
T KOG1916|consen 203 KGGEIRLLNINRALR-------SLFRSHSQRVTDMAFFAEGVLKLASLSP---DGTVFAWAISDGSVGFYQIY 265 (1283)
T ss_pred CCCceeEeeechHHH-------HHHHhcCCCcccHHHHhhchhhheeeCC---CCcEEEEeecCCccceeeee
Confidence 999999877665321 114557777666554 55 88999999999998888653
No 409
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=78.10 E-value=1.5 Score=54.49 Aligned_cols=104 Identities=17% Similarity=0.094 Sum_probs=52.7
Q ss_pred HHHHhhhhccccccchHHHHHHHHHHHhccc-cccccc---ccccccchhhhcccccchhhhhhhHHHHhhccChhhhhh
Q 000722 1019 KEFLDLIDAADATGQANIAREALKRLAAAGS-VKGALQ---GHELRGLALRLANHGELTRLSGLVTNLISLGLGREAAFS 1094 (1331)
Q Consensus 1019 ~~w~~l~~~al~~g~~~~a~~~~~~~~~~~~-~~~~~~---~~~~~~l~ll~~~~g~~~~l~~l~~~~~~~~~~~~~af~ 1094 (1331)
.-...|+.+..++|++..|+.|++++=+--. +.|+.. ..-+..+..+++..++.+...++...+.+.=..-..-++
T Consensus 284 ~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~ 363 (508)
T KOG1840|consen 284 ATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDN 363 (508)
T ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccc
Confidence 5677889999999999999999998721100 000000 012344555666666666655554433332110001111
Q ss_pred hhhcCchHHHHHHhhhhhhHHHHHHhhh
Q 000722 1095 AAILGDNALMEKAWQDTGMLAEAVLHAH 1122 (1331)
Q Consensus 1095 ~~~lgd~~~~~~~l~~~~~~~~A~~~A~ 1122 (1331)
-.+-|-....-.++..+|++.||.-+.+
T Consensus 364 ~~~a~~~~nl~~l~~~~gk~~ea~~~~k 391 (508)
T KOG1840|consen 364 VNLAKIYANLAELYLKMGKYKEAEELYK 391 (508)
T ss_pred hHHHHHHHHHHHHHHHhcchhHHHHHHH
Confidence 0122223334445566666666665443
No 410
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=77.90 E-value=16 Score=41.62 Aligned_cols=122 Identities=19% Similarity=0.212 Sum_probs=68.7
Q ss_pred cccceeeehhhcccCCC-cceEeecCCCceeeeeehhhheeehhhcCCCccchhhhhHhhhccccEEEeecCCCceEEEE
Q 000722 164 NKSLVCMEFLSRSAVGD-VPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILW 242 (1331)
Q Consensus 164 ~~~V~~Vaf~P~s~Spd-g~~LasGs~DGtIrlWDl~t~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrVW 242 (1331)
...+..++| +|+ +.++++....+.|..++.+ |+.++.+.-.--+..-.|+ +..++.++++--.++.+.++
T Consensus 21 ~~e~SGLTy-----~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~---y~g~~~~vl~~Er~~~L~~~ 91 (248)
T PF06977_consen 21 LDELSGLTY-----NPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGIT---YLGNGRYVLSEERDQRLYIF 91 (248)
T ss_dssp -S-EEEEEE-----ETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEE---E-STTEEEEEETTTTEEEEE
T ss_pred cCCccccEE-----cCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEE---EECCCEEEEEEcCCCcEEEE
Confidence 456899999 454 5677788888999888864 7777766322223334444 34467777776678999999
Q ss_pred eccCCCc-cccc-ccccee---eeccCcEEEEEechhccCCCcEEEeecCceeEeeeccc
Q 000722 243 SADHGQD-SREL-VPKLSL---KAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVS 297 (1331)
Q Consensus 243 Dl~tg~~-~~~~-~~~~~l---~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t 297 (1331)
++..... +... .....+ ..++.++-.++|+| .+..|+.+-...-.+||.+..
T Consensus 92 ~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~---~~~~L~v~kE~~P~~l~~~~~ 148 (248)
T PF06977_consen 92 TIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDP---KTNRLFVAKERKPKRLYEVNG 148 (248)
T ss_dssp EE----TT--EEEEEEEE---S---SS--EEEEEET---TTTEEEEEEESSSEEEEEEES
T ss_pred EEeccccccchhhceEEecccccCCCcceEEEEEcC---CCCEEEEEeCCCChhhEEEcc
Confidence 8844321 1100 011111 24566799999999 555666666666667776654
No 411
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=77.77 E-value=7.2 Score=47.92 Aligned_cols=133 Identities=14% Similarity=0.082 Sum_probs=71.5
Q ss_pred hhHHHHhhhccccccCCcccccccccccCCCCCCCCceEEEEEeeccee-Ee--eeecccCCCCCccccccccceeeehh
Q 000722 97 VRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FL--DLVTMRGRDIPKQELDNKSLVCMEFL 173 (1331)
Q Consensus 97 IrvWdl~tg~~l~~~~~~~~~~~~~~V~svafspdg~~lLasgs~d~iI-vw--Dl~t~~~~~i~~~~~h~~~V~~Vaf~ 173 (1331)
+.++++.+++...... ....-....|+|||+.++.+...++.. +| |+.+..... + .+...+.+ +
T Consensus 220 i~~~~l~~g~~~~i~~------~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~---L-t~~~gi~~---~ 286 (425)
T COG0823 220 IYYLDLNTGKRPVILN------FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPR---L-TNGFGINT---S 286 (425)
T ss_pred EEEEeccCCccceeec------cCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCccee---c-ccCCcccc---C
Confidence 6666666654321110 122233567999999777777777655 44 776654222 1 12222222 2
Q ss_pred hcccCCCcceEeecCCC-c--eeeeeehhhheeehhhcCCCccchhhhhHhhhccccEEEeecCCC-ce--EEEEeccCC
Q 000722 174 SRSAVGDVPLVAFGSSD-G--VIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSD-GL--LILWSADHG 247 (1331)
Q Consensus 174 P~s~Spdg~~LasGs~D-G--tIrlWDl~t~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~D-gt--IrVWDl~tg 247 (1331)
| +++|||++|+..++. | .|.++|++.....+... .-.... +-. .+|+|++|+..+.+ |. |.+.|+.++
T Consensus 287 P-s~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~-~~~~~~-~p~---~SpdG~~i~~~~~~~g~~~i~~~~~~~~ 360 (425)
T COG0823 287 P-SWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTF-SGGGNS-NPV---WSPDGDKIVFESSSGGQWDIDKNDLASG 360 (425)
T ss_pred c-cCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeec-cCCCCc-Ccc---CCCCCCEEEEEeccCCceeeEEeccCCC
Confidence 2 348999998877643 3 46666766554432222 111222 333 58999988876643 44 555555444
Q ss_pred C
Q 000722 248 Q 248 (1331)
Q Consensus 248 ~ 248 (1331)
.
T Consensus 361 ~ 361 (425)
T COG0823 361 G 361 (425)
T ss_pred C
Confidence 3
No 412
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=77.35 E-value=4.9 Score=49.73 Aligned_cols=70 Identities=7% Similarity=-0.006 Sum_probs=43.4
Q ss_pred CCCCCCCCceEEEEEeecceeEeeeecccCCCCCccccccccceeeehhhcccCCCcceEeec-CCCceeeeeehhh
Q 000722 125 SPPPSTKGRHFLVICCVNKAIFLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFG-SSDGVIRVLSMIS 200 (1331)
Q Consensus 125 svafspdg~~lLasgs~d~iIvwDl~t~~~~~i~~~~~h~~~V~~Vaf~P~s~Spdg~~LasG-s~DGtIrlWDl~t 200 (1331)
.+.|||...-+.+-...|-.++.+++.... .++.-....+.|.|.+| ..||+.|+++ ++.=.-++||-..
T Consensus 117 GCVWHPk~~iL~VLT~~dvSV~~sV~~d~s-rVkaDi~~~G~IhCACW-----T~DG~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 117 GCVWHPKKAILTVLTARDVSVLPSVHCDSS-RVKADIKTSGLIHCACW-----TKDGQRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred cccccCCCceEEEEecCceeEeeeeeeCCc-eEEEeccCCceEEEEEe-----cCcCCEEEEEeCCeEEEEEecCch
Confidence 567999988444444555556666664332 22222344678999999 7799877654 3334567888543
No 413
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=77.07 E-value=2.1 Score=49.86 Aligned_cols=166 Identities=15% Similarity=0.103 Sum_probs=85.1
Q ss_pred CcceeeeecccCCchhhhHHHhhh-ccc--cchhHHHHHhhcccccccc----cCCCcccceeee---------eccccc
Q 000722 904 PGIRCRCLAAYGDSVSAVKWASRL-GRE--HHDDLAQFMLGMGYATEAL----HLPGISKRLEFD---------LAMQSN 967 (1331)
Q Consensus 904 ~~~~~~~~~~~~~~~~a~~~~~~i-~~~--~~~~~a~fl~~~g~~e~Al----~~~~ds~~~~f~---------la~~~g 967 (1331)
..+.||+.+..|+++.++.-+..- ++. -...+|.|+...+-.|.++ ....+ .....+ +-+..|
T Consensus 38 ~~~~~Rs~iAlg~~~~vl~ei~~~~~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~-~~~~~~~~~~~~~A~i~~~~~ 116 (290)
T PF04733_consen 38 DFYQYRSYIALGQYDSVLSEIKKSSSPELQAVRLLAEYLSSPSDKESALEELKELLAD-QAGESNEIVQLLAATILFHEG 116 (290)
T ss_dssp HHHHHHHHHHTT-HHHHHHHS-TTSSCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCT-S---CHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHcCChhHHHHHhccCCChhHHHHHHHHHHHhCccchHHHHHHHHHHHHh-ccccccHHHHHHHHHHHHHcC
Confidence 357788888888888775544321 111 1355788888755455544 23333 222121 234568
Q ss_pred hHHHHHHhhhhcccccccCCCCCCCChhhhcccccchhhHHHHHHHHHHHHHHHHhhhhccccccchHHHHHHHHHHHhc
Q 000722 968 DLKRALQCLITMSNSRDIGQDHPGLDLNDILTLTTKKENIVEAVQGIVKFAKEFLDLIDAADATGQANIAREALKRLAAA 1047 (1331)
Q Consensus 968 ~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~~~al~~g~~~~a~~~~~~~~~~ 1047 (1331)
+++.|++++ +..+.. +.---+.+.+|+.+++++|++-|++.+.+
T Consensus 117 ~~~~AL~~l------~~~~~l------------------------------E~~al~Vqi~L~~~R~dlA~k~l~~~~~~ 160 (290)
T PF04733_consen 117 DYEEALKLL------HKGGSL------------------------------ELLALAVQILLKMNRPDLAEKELKNMQQI 160 (290)
T ss_dssp HHHHHHCCC------TTTTCH------------------------------HHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred CHHHHHHHH------HccCcc------------------------------cHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 888888887 333221 22222356788899999999999988776
Q ss_pred ccccccccccccccchhhhccccc--chhhhhhhHHHHhh-ccCh---hhhhhhh-hcCchHHHHHHhhh
Q 000722 1048 GSVKGALQGHELRGLALRLANHGE--LTRLSGLVTNLISL-GLGR---EAAFSAA-ILGDNALMEKAWQD 1110 (1331)
Q Consensus 1048 ~~~~~~~~~~~~~~l~ll~~~~g~--~~~l~~l~~~~~~~-~~~~---~~af~~~-~lgd~~~~~~~l~~ 1110 (1331)
.. .+.+.+=... .+.+..|. ....-.+.+....+ |... |.-..|. .+|++++++++|.+
T Consensus 161 ~e--D~~l~qLa~a--wv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~ 226 (290)
T PF04733_consen 161 DE--DSILTQLAEA--WVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEE 226 (290)
T ss_dssp SC--CHHHHHHHHH--HHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHH
T ss_pred CC--cHHHHHHHHH--HHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 62 1221111111 12233343 33333333333333 2221 2222344 78888888888775
No 414
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=76.99 E-value=3.9 Score=44.03 Aligned_cols=91 Identities=10% Similarity=0.060 Sum_probs=50.0
Q ss_pred HHHHhhhhccccccchHHHHHHHHHHHhcccccccccccccccchhhhcccccchhhhhhhHHHHhhccCh-hhhhh---
Q 000722 1019 KEFLDLIDAADATGQANIAREALKRLAAAGSVKGALQGHELRGLALRLANHGELTRLSGLVTNLISLGLGR-EAAFS--- 1094 (1331)
Q Consensus 1019 ~~w~~l~~~al~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~ll~~~~g~~~~l~~l~~~~~~~~~~~-~~af~--- 1094 (1331)
..|..+|.....+|+++.|++.|+++-.... ......-+..+..+|...|+.+...+..+.+....... ...+.
T Consensus 100 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~ 177 (234)
T TIGR02521 100 DVLNNYGTFLCQQGKYEQAMQQFEQAIEDPL--YPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAE 177 (234)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhccc--cccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHH
Confidence 4566677777778888888888887732110 00001123345666777777777777766666554321 11111
Q ss_pred -hhhcCchHHHHHHhhhh
Q 000722 1095 -AAILGDNALMEKAWQDT 1111 (1331)
Q Consensus 1095 -~~~lgd~~~~~~~l~~~ 1111 (1331)
....|+.+++++.+.+.
T Consensus 178 ~~~~~~~~~~A~~~~~~~ 195 (234)
T TIGR02521 178 LYYLRGQYKDARAYLERY 195 (234)
T ss_pred HHHHcCCHHHHHHHHHHH
Confidence 11456666666665543
No 415
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=76.79 E-value=16 Score=45.56 Aligned_cols=120 Identities=14% Similarity=0.135 Sum_probs=66.6
Q ss_pred ccCcEEEEEechhcc-CCCcEEEeecCceeEeeeccc-----hhhhcccCC--CCcccccccccccCCCCCCCceee--e
Q 000722 262 HDGGVVAVELSRVMG-GSPQLITIGADKTLAIWDTVS-----FKELRRIKP--VPKLACHSVASWCHPRAPNLDILT--C 331 (1331)
Q Consensus 262 H~~~V~svafsp~~~-dg~~LaSgs~Dg~IrIWDl~t-----~~~l~~~~~--~~~l~~H~~~V~svafspdg~lLa--~ 331 (1331)
.-..|..+.|.|... +.+.|+.....+.|.||-+.- .+.+....+ .+.+... -..+.|||...+|+ .
T Consensus 55 qFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvL---pQGCVWHPk~~iL~VLT 131 (671)
T PF15390_consen 55 QFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVL---PQGCVWHPKKAILTVLT 131 (671)
T ss_pred ccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccC---CCcccccCCCceEEEEe
Confidence 334589999998421 344677778899999998752 221111000 0011111 12578999998875 3
Q ss_pred eecce-eeeeecCccccccccccccccCCCccccccccceEEEEEEeccCCccEee-ecceeEEEEeecCCC
Q 000722 332 VKDSH-IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVA-TGTNVGVIISEFDPR 401 (1331)
Q Consensus 332 s~Dg~-IWdl~~~~~~~l~~~~~~~~~~~~~~~l~~h~~~~I~~la~sp~~~~lLA-tGs~DG~Il~VWDlr 401 (1331)
..|-. +.+++.... .+ ...-...+.|.|.+|.+++.++++ .|+.=.. ++||-.
T Consensus 132 ~~dvSV~~sV~~d~s--------------rV-kaDi~~~G~IhCACWT~DG~RLVVAvGSsLHS--yiWd~~ 186 (671)
T PF15390_consen 132 ARDVSVLPSVHCDSS--------------RV-KADIKTSGLIHCACWTKDGQRLVVAVGSSLHS--YIWDSA 186 (671)
T ss_pred cCceeEeeeeeeCCc--------------eE-EEeccCCceEEEEEecCcCCEEEEEeCCeEEE--EEecCc
Confidence 45554 455543210 01 111123337999999997666544 4443333 699953
No 416
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=76.50 E-value=3.1 Score=50.67 Aligned_cols=106 Identities=17% Similarity=0.044 Sum_probs=68.0
Q ss_pred eecccCCchhhhHHHhhhccc-----cchhH-HHHHhhccccccc-------ccCCCcccc-----eeeeeccccchHHH
Q 000722 910 CLAAYGDSVSAVKWASRLGRE-----HHDDL-AQFMLGMGYATEA-------LHLPGISKR-----LEFDLAMQSNDLKR 971 (1331)
Q Consensus 910 ~~~~~~~~~~a~~~~~~i~~~-----~~~~~-a~fl~~~g~~e~A-------l~~~~ds~~-----~~f~la~~~g~l~~ 971 (1331)
.++..|||+.|.+.+..-++. .++-+ |+.-..+|-++.| .+...+ .. ...+++++.|+.+.
T Consensus 93 ~a~~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~-~~~~~~l~~a~l~l~~g~~~~ 171 (398)
T PRK10747 93 LKLAEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADN-DQLPVEITRVRIQLARNENHA 171 (398)
T ss_pred HHHhCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHCCCHHH
Confidence 456679999999988874332 23334 3333666665555 444444 22 22778999999999
Q ss_pred HHHhhhhcccccccCCCCCCCChhhhcccccchhhHHHHHHHHHHHHHHHHhhhhccccccchHHHHHHHHHHHhc
Q 000722 972 ALQCLITMSNSRDIGQDHPGLDLNDILTLTTKKENIVEAVQGIVKFAKEFLDLIDAADATGQANIAREALKRLAAA 1047 (1331)
Q Consensus 972 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~~~al~~g~~~~a~~~~~~~~~~ 1047 (1331)
|++.+..+... ..++. .-.+-+++..+.+|+.+.|.+-|.++...
T Consensus 172 Al~~l~~~~~~-~P~~~------------------------------~al~ll~~~~~~~gdw~~a~~~l~~l~k~ 216 (398)
T PRK10747 172 ARHGVDKLLEV-APRHP------------------------------EVLRLAEQAYIRTGAWSSLLDILPSMAKA 216 (398)
T ss_pred HHHHHHHHHhc-CCCCH------------------------------HHHHHHHHHHHHHHhHHHHHHHHHHHHHc
Confidence 99988443222 11111 44556788888888999888877777533
No 417
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=76.17 E-value=4.7 Score=45.40 Aligned_cols=87 Identities=18% Similarity=0.122 Sum_probs=67.8
Q ss_pred HHHHhhhhccccccchHHHHHHHHHHHhcccccccccccccccchhhhcccccchhhhhhhHHHHhhccCh-----hhhh
Q 000722 1019 KEFLDLIDAADATGQANIAREALKRLAAAGSVKGALQGHELRGLALRLANHGELTRLSGLVTNLISLGLGR-----EAAF 1093 (1331)
Q Consensus 1019 ~~w~~l~~~al~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~ll~~~~g~~~~l~~l~~~~~~~~~~~-----~~af 1093 (1331)
+-|..||-..+..|+++.|+..|.++-++. ..+.. =+..|..+|...||++..+++..-+...+... |.+|
T Consensus 135 ~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~-~~~p~---~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl 210 (257)
T COG5010 135 EAWNLLGAALDQLGRFDEARRAYRQALELA-PNEPS---IANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLAL 210 (257)
T ss_pred hhhhHHHHHHHHccChhHHHHHHHHHHHhc-cCCch---hhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHH
Confidence 789999999999999999999999995443 12222 35689999999999999999999888877631 4444
Q ss_pred hhhhcCchHHHHHHhh
Q 000722 1094 SAAILGDNALMEKAWQ 1109 (1331)
Q Consensus 1094 ~~~~lgd~~~~~~~l~ 1109 (1331)
.--.-||..++.++-.
T Consensus 211 ~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 211 VVGLQGDFREAEDIAV 226 (257)
T ss_pred HHhhcCChHHHHhhcc
Confidence 4447888888877654
No 418
>PRK12370 invasion protein regulator; Provisional
Probab=75.35 E-value=9.3 Score=48.72 Aligned_cols=87 Identities=9% Similarity=-0.102 Sum_probs=47.8
Q ss_pred HHHHhhhhccccccchHHHHHHHHHHHhcccccccccccccccchhhhcccccchhhhhhhHHHHhhccChhh--hh---
Q 000722 1019 KEFLDLIDAADATGQANIAREALKRLAAAGSVKGALQGHELRGLALRLANHGELTRLSGLVTNLISLGLGREA--AF--- 1093 (1331)
Q Consensus 1019 ~~w~~l~~~al~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~ll~~~~g~~~~l~~l~~~~~~~~~~~~~--af--- 1093 (1331)
.-|..||.....+|+++.|+++|+++-..+ ++.+- -+..|..+|...|+.++.....+.+.+..-. +. .+
T Consensus 339 ~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~---a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~ 413 (553)
T PRK12370 339 QALGLLGLINTIHSEYIVGSLLFKQANLLS-PISAD---IKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKL 413 (553)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHH---HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHH
Confidence 456666777777777777777777763222 21111 1234555666677777666666666554432 21 11
Q ss_pred -hhhhcCchHHHHHHhhh
Q 000722 1094 -SAAILGDNALMEKAWQD 1110 (1331)
Q Consensus 1094 -~~~~lgd~~~~~~~l~~ 1110 (1331)
..+.+|+.+++++.+.+
T Consensus 414 ~~~~~~g~~eeA~~~~~~ 431 (553)
T PRK12370 414 WITYYHTGIDDAIRLGDE 431 (553)
T ss_pred HHHHhccCHHHHHHHHHH
Confidence 11256666666665544
No 419
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=75.32 E-value=2.4 Score=46.76 Aligned_cols=59 Identities=25% Similarity=0.291 Sum_probs=36.7
Q ss_pred CCcceEeecCCCceeeeeehhhheeehhhcCCCccchhhhhHhhhccccEEEeecCCCceEEEEeccCCCc
Q 000722 179 GDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQD 249 (1331)
Q Consensus 179 pdg~~LasGs~DGtIrlWDl~t~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrVWDl~tg~~ 249 (1331)
.++.+..+++.||.||.|+..-.+.+...- .|+. .++..+++.+.|+.|.+|+......
T Consensus 112 ~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g-~h~~-----------~~~e~~ivv~sd~~i~~a~~S~d~~ 170 (238)
T KOG2444|consen 112 RDSSLGCVGAQDGRIRACNIKPNKVLGYVG-QHNF-----------ESGEELIVVGSDEFLKIADTSHDRV 170 (238)
T ss_pred cccceeEEeccCCceeeeccccCceeeeec-cccC-----------CCcceeEEecCCceEEeeccccchh
Confidence 345688899999999999988766655443 4442 1233444445555666665554443
No 420
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=74.87 E-value=3.4 Score=54.83 Aligned_cols=177 Identities=16% Similarity=0.013 Sum_probs=99.5
Q ss_pred ecccCCchhhhHHHhhhccc-------cchhHHHHHhhcccccccccCCC----cccce-------e---eeeccccchH
Q 000722 911 LAAYGDSVSAVKWASRLGRE-------HHDDLAQFMLGMGYATEALHLPG----ISKRL-------E---FDLAMQSNDL 969 (1331)
Q Consensus 911 ~~~~~~~~~a~~~~~~i~~~-------~~~~~a~fl~~~g~~e~Al~~~~----ds~~~-------~---f~la~~~g~l 969 (1331)
++.+|++++|++....+-+. ....++..+..+|-+++|+++.. ..+.. . |.+-++.|++
T Consensus 247 Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~ 326 (765)
T PRK10049 247 LLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENY 326 (765)
T ss_pred HHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccH
Confidence 45668899998877773322 12236788888999999977632 11211 1 2234577999
Q ss_pred HHHHHhhhhcccccccCCCCCCCChhhhcccccc-hhhHHHHHHHHHHHHHHHHhhhhccccccchHHHHHHHHHHHhcc
Q 000722 970 KRALQCLITMSNSRDIGQDHPGLDLNDILTLTTK-KENIVEAVQGIVKFAKEFLDLIDAADATGQANIAREALKRLAAAG 1048 (1331)
Q Consensus 970 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~w~~l~~~al~~g~~~~a~~~~~~~~~~~ 1048 (1331)
+.|++.+..+...... +.. ++.+... .++.. ..-+..++.....+|+.+.|+++|+++....
T Consensus 327 ~eA~~~l~~~~~~~P~-------~~~-~~~~~~~~p~~~~---------~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~ 389 (765)
T PRK10049 327 PGALTVTAHTINNSPP-------FLR-LYGSPTSIPNDDW---------LQGQSLLSQVAKYSNDLPQAEMRARELAYNA 389 (765)
T ss_pred HHHHHHHHHHhhcCCc-------eEe-ecCCCCCCCCchH---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999887444322100 000 0000000 01000 0234567888899999999999999974322
Q ss_pred cccccccccccccchhhhcccccchhhhhhhHHHHhhccChhh------hhhhhhcCchHHHHHHhh
Q 000722 1049 SVKGALQGHELRGLALRLANHGELTRLSGLVTNLISLGLGREA------AFSAAILGDNALMEKAWQ 1109 (1331)
Q Consensus 1049 ~~~~~~~~~~~~~l~ll~~~~g~~~~l~~l~~~~~~~~~~~~~------af~~~~lgd~~~~~~~l~ 1109 (1331)
+...- =+..|..+|...|+.++..++.+.+.+..-. +. +..+.-+|+.+++++++.
T Consensus 390 -P~n~~---l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd-~~~l~~~~a~~al~~~~~~~A~~~~~ 451 (765)
T PRK10049 390 -PGNQG---LRIDYASVLQARGWPRAAENELKKAEVLEPR-NINLEVEQAWTALDLQEWRQMDVLTD 451 (765)
T ss_pred -CCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 11100 1235666777778888888877777775432 21 111125566666665554
No 421
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=74.81 E-value=14 Score=43.54 Aligned_cols=109 Identities=16% Similarity=0.182 Sum_probs=57.4
Q ss_pred CCCcceEeec--CCCceeeeeehhhheeehhhcCCCccchhhhhHhhhccccEEEeecCCCceEEEEecc-CCCcccccc
Q 000722 178 VGDVPLVAFG--SSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSAD-HGQDSRELV 254 (1331)
Q Consensus 178 Spdg~~LasG--s~DGtIrlWDl~t~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrVWDl~-tg~~~~~~~ 254 (1331)
+.+++++++. +--.+|.|.|+..++.+..+... -| |..++...+-|.+-|.||++.-..+. .|+..+...
T Consensus 103 s~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P-----GC--~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t 175 (342)
T PF06433_consen 103 SADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTP-----GC--WLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKST 175 (342)
T ss_dssp -TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGT-----SE--EEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEE
T ss_pred ccCCcEEEEEccCCCCeEEEEECCCCceeeeecCC-----CE--EEEEecCCCceEEEecCCceEEEEECCCCCEeEeec
Confidence 5677776654 35567888888888777665311 11 22233333457788899999988887 444322111
Q ss_pred ccceeeeccCcE-EEEEechhccCCCcEEEeecCceeEeeeccch
Q 000722 255 PKLSLKAHDGGV-VAVELSRVMGGSPQLITIGADKTLAIWDTVSF 298 (1331)
Q Consensus 255 ~~~~l~gH~~~V-~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~ 298 (1331)
. .+..-.+++ ..-++.. .+..++--+.+|.|+--|+...
T Consensus 176 ~--~F~~~~dp~f~~~~~~~---~~~~~~F~Sy~G~v~~~dlsg~ 215 (342)
T PF06433_consen 176 K--VFDPDDDPLFEHPAYSR---DGGRLYFVSYEGNVYSADLSGD 215 (342)
T ss_dssp E--ESSTTTS-B-S--EEET---TTTEEEEEBTTSEEEEEEETTS
T ss_pred c--ccCCCCcccccccceEC---CCCeEEEEecCCEEEEEeccCC
Confidence 1 111111222 1222332 2334444567777777776543
No 422
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=74.42 E-value=9.7 Score=44.80 Aligned_cols=113 Identities=12% Similarity=0.025 Sum_probs=69.0
Q ss_pred cccceeeehhhcccCCCcceEeecCCCceeeeeehhhhe-eehhhcCCCccchhhhhHhhhccccEEEeecCCCceEEEE
Q 000722 164 NKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWK-LVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILW 242 (1331)
Q Consensus 164 ~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~~-~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrVW 242 (1331)
.+.|++++-. ++. |+.+ .++.|.+|++...+ ....-.......++++. ..+++++.|.....+.++
T Consensus 88 ~g~V~ai~~~------~~~-lv~~-~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~-----~~~~~I~vgD~~~sv~~~ 154 (321)
T PF03178_consen 88 KGPVTAICSF------NGR-LVVA-VGNKLYVYDLDNSKTLLKKAFYDSPFYITSLS-----VFKNYILVGDAMKSVSLL 154 (321)
T ss_dssp SS-EEEEEEE------TTE-EEEE-ETTEEEEEEEETTSSEEEEEEE-BSSSEEEEE-----EETTEEEEEESSSSEEEE
T ss_pred cCcceEhhhh------CCE-EEEe-ecCEEEEEEccCcccchhhheecceEEEEEEe-----ccccEEEEEEcccCEEEE
Confidence 6788888772 344 4444 34789999998777 44332212333555554 235588888888888887
Q ss_pred eccCC-CccccccccceeeeccCcEEEEEechhccCCCcEEEeecCceeEeeecc
Q 000722 243 SADHG-QDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTV 296 (1331)
Q Consensus 243 Dl~tg-~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~ 296 (1331)
..+.. ..+.. .. -......++++.|-+ +++.++.+..+|.+.++...
T Consensus 155 ~~~~~~~~l~~---va-~d~~~~~v~~~~~l~---d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 155 RYDEENNKLIL---VA-RDYQPRWVTAAEFLV---DEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp EEETTTE-EEE---EE-EESS-BEEEEEEEE----SSSEEEEEETTSEEEEEEE-
T ss_pred EEEccCCEEEE---EE-ecCCCccEEEEEEec---CCcEEEEEcCCCeEEEEEEC
Confidence 55542 11111 11 122345588888886 44699999999999999875
No 423
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=74.27 E-value=25 Score=42.64 Aligned_cols=183 Identities=11% Similarity=0.051 Sum_probs=109.0
Q ss_pred cCCCCCCCCceEEEEEeeccee-EeeeecccCCCCCccccccccceeeehhhcccCCCcceEeecCC---Cceeeeeehh
Q 000722 124 ASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSS---DGVIRVLSMI 199 (1331)
Q Consensus 124 ~svafspdg~~lLasgs~d~iI-vwDl~t~~~~~i~~~~~h~~~V~~Vaf~P~s~Spdg~~LasGs~---DGtIrlWDl~ 199 (1331)
..+..++.+...++...++..+ ++|..+.+.. ....-......+++ +++++.+..+.. ++++.+.|..
T Consensus 77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~---~~~~vG~~P~~~~~-----~~~~~~vYV~n~~~~~~~vsvid~~ 148 (381)
T COG3391 77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVL---GSIPVGLGPVGLAV-----DPDGKYVYVANAGNGNNTVSVIDAA 148 (381)
T ss_pred cceeeCCCCCeEEEecCCCCeEEEEcCccccee---eEeeeccCCceEEE-----CCCCCEEEEEecccCCceEEEEeCC
Confidence 3566777887677777665554 7785543221 11111236677888 678877766654 7899999999
Q ss_pred hheeehhhcCCCccchhhhhHhhhccccEEEe-ecCCCceEEEEeccCCCccccccccceeeeccCcEEEEEechhccCC
Q 000722 200 SWKLVRRYTGGHKGSISCLMTFMASSGEALLV-SGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGS 278 (1331)
Q Consensus 200 t~~~v~~~~~gH~~~V~~vawf~~spdg~lLa-Sgs~DgtIrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg 278 (1331)
+.+.+.....+. .+ ..++ ++|+|..+. +-..++.|.+.|.......+ ..... ...-...-..+.+.| ++
T Consensus 149 t~~~~~~~~vG~-~P-~~~a---~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~~-~~~~~~~P~~i~v~~---~g 218 (381)
T COG3391 149 TNKVTATIPVGN-TP-TGVA---VDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GSVGS-LVGVGTGPAGIAVDP---DG 218 (381)
T ss_pred CCeEEEEEecCC-Cc-ceEE---ECCCCCeEEEEecCCCeEEEEeCCCcceec-ccccc-ccccCCCCceEEECC---CC
Confidence 888877754232 23 5554 789988554 44588999999976654332 11000 111222345688888 66
Q ss_pred CcEEEeec-C--ceeEeeeccchhhhcccCCCCcccccccccccCCCCCCCcee
Q 000722 279 PQLITIGA-D--KTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDIL 329 (1331)
Q Consensus 279 ~~LaSgs~-D--g~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg~lL 329 (1331)
.++..... + +.+...|..++.......+.. -. ....+.++|+|..+
T Consensus 219 ~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~----~~-~~~~v~~~p~g~~~ 267 (381)
T COG3391 219 NRVYVANDGSGSNNVLKIDTATGNVTATDLPVG----SG-APRGVAVDPAGKAA 267 (381)
T ss_pred CEEEEEeccCCCceEEEEeCCCceEEEeccccc----cC-CCCceeECCCCCEE
Confidence 65544433 3 588888888776544311111 11 23356778888755
No 424
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=74.04 E-value=14 Score=42.08 Aligned_cols=118 Identities=17% Similarity=0.162 Sum_probs=67.6
Q ss_pred cceeeehhhcccCCCcceEeecCCCc--eeeeeehhhheeehhhcCCCccchhhhhHhhhccccEEEeecCCCceEEEEe
Q 000722 166 SLVCMEFLSRSAVGDVPLVAFGSSDG--VIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWS 243 (1331)
Q Consensus 166 ~V~~Vaf~P~s~Spdg~~LasGs~DG--tIrlWDl~t~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrVWD 243 (1331)
....+.| ..++.++-+.+.-| .|+.+|+.+++......-.....--.+. .. ++.+..-.=.++...+||
T Consensus 46 FTQGL~~-----~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit---~~-~d~l~qLTWk~~~~f~yd 116 (264)
T PF05096_consen 46 FTQGLEF-----LDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGIT---IL-GDKLYQLTWKEGTGFVYD 116 (264)
T ss_dssp EEEEEEE-----EETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEE---EE-TTEEEEEESSSSEEEEEE
T ss_pred cCccEEe-----cCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEE---EE-CCEEEEEEecCCeEEEEc
Confidence 4455777 34677777766554 7999999998776543211111111111 11 345555557889999999
Q ss_pred ccCCCccccccccceeeeccCcEEEEEechhccCCCcEEEeecCceeEeeeccchhhhccc
Q 000722 244 ADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRI 304 (1331)
Q Consensus 244 l~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~ 304 (1331)
..+-+.+.++ .+. +.=+.++. ++..|+.......++++|..+.+..+++
T Consensus 117 ~~tl~~~~~~----~y~---~EGWGLt~-----dg~~Li~SDGS~~L~~~dP~~f~~~~~i 165 (264)
T PF05096_consen 117 PNTLKKIGTF----PYP---GEGWGLTS-----DGKRLIMSDGSSRLYFLDPETFKEVRTI 165 (264)
T ss_dssp TTTTEEEEEE----E-S---SS--EEEE-----CSSCEEEE-SSSEEEEE-TTT-SEEEEE
T ss_pred cccceEEEEE----ecC---CcceEEEc-----CCCEEEEECCccceEEECCcccceEEEE
Confidence 9887655442 222 33455663 4566666666778999998877655543
No 425
>PHA03247 large tegument protein UL36; Provisional
Probab=73.92 E-value=41 Score=48.76 Aligned_cols=16 Identities=13% Similarity=0.216 Sum_probs=9.8
Q ss_pred CCceeeEEeecceeEe
Q 000722 499 DIPYFSVYKVSDWSIV 514 (1331)
Q Consensus 499 ~~g~y~Iy~i~~~~~i 514 (1331)
..|.++...+.+|+..
T Consensus 2161 s~G~LFa~R~aDWk~g 2176 (3151)
T PHA03247 2161 ATGLLFGTRLADWRHG 2176 (3151)
T ss_pred CCCeeEEeeHhhhccC
Confidence 4455666666777654
No 426
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=73.91 E-value=8.2 Score=49.25 Aligned_cols=103 Identities=11% Similarity=0.215 Sum_probs=64.2
Q ss_pred cEEEeecCCCceEEEEeccCCCccccccccceeeeccCcEEEEEechhccCCCcEEEeecCceeEeeeccchhhh---cc
Q 000722 227 EALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKEL---RR 303 (1331)
Q Consensus 227 g~lLaSgs~DgtIrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l---~~ 303 (1331)
+..-+.-+...++.|||.+.+....+ ..+ ...+.|.++.|... ++++.+++.|..+.|.+|--...... ..
T Consensus 41 ~k~a~V~~~~~~LtIWD~~~~~lE~~----~~f-~~~~~I~dLDWtst-~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~ 114 (631)
T PF12234_consen 41 KKIAVVDSSRSELTIWDTRSGVLEYE----ESF-SEDDPIRDLDWTST-PDGQSILAVGFPHHVLLYTQLRYDYTNKGPS 114 (631)
T ss_pred CcEEEEECCCCEEEEEEcCCcEEEEe----eee-cCCCceeeceeeec-CCCCEEEEEEcCcEEEEEEccchhhhcCCcc
Confidence 33334445556799999998764322 222 34677999999875 57889999999999999843211100 01
Q ss_pred cCCCC--cccccc-cccccCCCCCCCceeeeeecc
Q 000722 304 IKPVP--KLACHS-VASWCHPRAPNLDILTCVKDS 335 (1331)
Q Consensus 304 ~~~~~--~l~~H~-~~V~svafspdg~lLa~s~Dg 335 (1331)
+.++. .+..|+ ..|....|.++|.+++++...
T Consensus 115 w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sGNq 149 (631)
T PF12234_consen 115 WAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSGNQ 149 (631)
T ss_pred cceeEEEEeecCCCCCccceeEecCCeEEEEeCCE
Confidence 11111 123444 467889999999877655433
No 427
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=73.88 E-value=26 Score=40.36 Aligned_cols=165 Identities=13% Similarity=0.086 Sum_probs=94.3
Q ss_pred cccccCCCCCCCCceEEEEEeecceeEe-eeecccCCCCCccccccccceeeehhhcccCCCcceEeecCCCceeeeeeh
Q 000722 120 TSGFASPPPSTKGRHFLVICCVNKAIFL-DLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSM 198 (1331)
Q Consensus 120 ~~~V~svafspdg~~lLasgs~d~iIvw-Dl~t~~~~~i~~~~~h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl 198 (1331)
...+.++.|+|+.+.++++......+++ +.+..-.+.++... -+..-.|.| ..++.++++--.++.+.++.+
T Consensus 85 ~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g--~~DpE~Iey-----ig~n~fvi~dER~~~l~~~~v 157 (316)
T COG3204 85 TANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTG--FSDPETIEY-----IGGNQFVIVDERDRALYLFTV 157 (316)
T ss_pred cccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccc--cCChhHeEE-----ecCCEEEEEehhcceEEEEEE
Confidence 3448999999999978888777777776 44321112222222 223445777 456777777777888888877
Q ss_pred hhheeehh-----hc---CCC-ccchhhhhHhhhccccEEEeecCCCceEEEEeccCCCccccc----cccceeeeccCc
Q 000722 199 ISWKLVRR-----YT---GGH-KGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSREL----VPKLSLKAHDGG 265 (1331)
Q Consensus 199 ~t~~~v~~-----~~---~gH-~~~V~~vawf~~spdg~lLaSgs~DgtIrVWDl~tg~~~~~~----~~~~~l~gH~~~ 265 (1331)
.....+.. +. ..+ +..-..++| .+....|..+-.-.-++||.+..+...-.. .+.....-.-..
T Consensus 158 d~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~---d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~D 234 (316)
T COG3204 158 DADTTVISAKVQKIPLGTTNKKNKGFEGLAW---DPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLD 234 (316)
T ss_pred cCCccEEeccceEEeccccCCCCcCceeeec---CCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeec
Confidence 54321111 10 012 455566763 566666666666666677666533211000 000000001234
Q ss_pred EEEEEechhccCCCcEEEeecCceeEeeecc
Q 000722 266 VVAVELSRVMGGSPQLITIGADKTLAIWDTV 296 (1331)
Q Consensus 266 V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~ 296 (1331)
|.++.|++ ..+.+|+-+.+++.+.-.|..
T Consensus 235 vSgl~~~~--~~~~LLVLS~ESr~l~Evd~~ 263 (316)
T COG3204 235 VSGLEFNA--ITNSLLVLSDESRRLLEVDLS 263 (316)
T ss_pred cccceecC--CCCcEEEEecCCceEEEEecC
Confidence 78889998 467778888888888777765
No 428
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=73.24 E-value=3.8 Score=51.25 Aligned_cols=92 Identities=11% Similarity=0.053 Sum_probs=65.4
Q ss_pred HHHHhhhhccccccchHHHHHHHHHHHhcccccccccccccccchhhhcccccchhhhhhhHHHHhhccC-hhhhhhhh-
Q 000722 1019 KEFLDLIDAADATGQANIAREALKRLAAAGSVKGALQGHELRGLALRLANHGELTRLSGLVTNLISLGLG-REAAFSAA- 1096 (1331)
Q Consensus 1019 ~~w~~l~~~al~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~ll~~~~g~~~~l~~l~~~~~~~~~~-~~~af~~~- 1096 (1331)
..|--||-.+++|++++.||.-||++-..+-.+..++-| +...|-..|..++.-.+.+.|..-.-. .-..|..+
T Consensus 490 nAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~----~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~ 565 (638)
T KOG1126|consen 490 NAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCH----IGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRAS 565 (638)
T ss_pred HHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhh----hhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHH
Confidence 789999999999999999999999997666433333222 333444567777777777777665433 13556644
Q ss_pred ---hcCchHHHHHHhhhhhhH
Q 000722 1097 ---ILGDNALMEKAWQDTGML 1114 (1331)
Q Consensus 1097 ---~lgd~~~~~~~l~~~~~~ 1114 (1331)
-+++.++|.+.|.+-..+
T Consensus 566 il~~~~~~~eal~~LEeLk~~ 586 (638)
T KOG1126|consen 566 ILFSLGRYVEALQELEELKEL 586 (638)
T ss_pred HHHhhcchHHHHHHHHHHHHh
Confidence 788999998888876543
No 429
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=73.06 E-value=5.5 Score=47.44 Aligned_cols=163 Identities=16% Similarity=0.059 Sum_probs=89.2
Q ss_pred ceeeeecccCCchhhhHHHhhhcccc-chhHHHHHhhcccccccccCCCcccceeeeeccccchHHHHHHhhhhcccccc
Q 000722 906 IRCRCLAAYGDSVSAVKWASRLGREH-HDDLAQFMLGMGYATEALHLPGISKRLEFDLAMQSNDLKRALQCLITMSNSRD 984 (1331)
Q Consensus 906 ~~~~~~~~~~~~~~a~~~~~~i~~~~-~~~~a~fl~~~g~~e~Al~~~~ds~~~~f~la~~~g~l~~a~~~~~~~~~~~~ 984 (1331)
++=+|++..||+++|....-.|=+.. -+.-|.++.+.-++ +.+ ++.+-...+++|+.+.+.=
T Consensus 174 lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~y------y~~------~~~ka~~hf~qal~ldpdh----- 236 (486)
T KOG0550|consen 174 LKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLY------YND------NADKAINHFQQALRLDPDH----- 236 (486)
T ss_pred hhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccc------ccc------chHHHHHHHhhhhccChhh-----
Confidence 44468889999999988776643332 34445555554221 111 1222233344444443110
Q ss_pred cCCCCCCCChhhhcccccchhhHHHHHHHHHHHHHHHHhhhhccccccchHHHHHHHHHHHhcccccccccccccccchh
Q 000722 985 IGQDHPGLDLNDILTLTTKKENIVEAVQGIVKFAKEFLDLIDAADATGQANIAREALKRLAAAGSVKGALQGHELRGLAL 1064 (1331)
Q Consensus 985 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~~~al~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~l 1064 (1331)
++-..+-++ .+--+.|+.=|..|-++|++..|.+||..+= .+..+.-.-++.
T Consensus 237 --------------------~~sk~~~~~-~k~le~~k~~gN~~fk~G~y~~A~E~Yteal-------~idP~n~~~nak 288 (486)
T KOG0550|consen 237 --------------------QKSKSASMM-PKKLEVKKERGNDAFKNGNYRKAYECYTEAL-------NIDPSNKKTNAK 288 (486)
T ss_pred --------------------hhHHhHhhh-HHHHHHHHhhhhhHhhccchhHHHHHHHHhh-------cCCccccchhHH
Confidence 000111111 1123689999999999999999999999883 233445556666
Q ss_pred hhccccc----chhhhhhhHHHHhhccChhh----hhh----hh-hcCchHHHHHHhhhhhhH
Q 000722 1065 RLANHGE----LTRLSGLVTNLISLGLGREA----AFS----AA-ILGDNALMEKAWQDTGML 1114 (1331)
Q Consensus 1065 l~~~~g~----~~~l~~l~~~~~~~~~~~~~----af~----~~-~lgd~~~~~~~l~~~~~~ 1114 (1331)
||...+- +.+|++-+..|...=.. +. |++ |. .|++.+++|+.+.++.+.
T Consensus 289 lY~nra~v~~rLgrl~eaisdc~~Al~i-D~syikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 289 LYGNRALVNIRLGRLREAISDCNEALKI-DSSYIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHhHhhhcccCCchhhhhhhhhhhhc-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6665442 22333333333333222 22 222 33 677888887777766544
No 430
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=72.65 E-value=26 Score=38.99 Aligned_cols=97 Identities=11% Similarity=-0.029 Sum_probs=59.7
Q ss_pred hhhhHhhhccccEEEeecCCCceEEEEe--ccCCCccccccccceeee---cc-CcEEEEEechhccCCCcEEEeecCce
Q 000722 216 SCLMTFMASSGEALLVSGGSDGLLILWS--ADHGQDSRELVPKLSLKA---HD-GGVVAVELSRVMGGSPQLITIGADKT 289 (1331)
Q Consensus 216 ~~vawf~~spdg~lLaSgs~DgtIrVWD--l~tg~~~~~~~~~~~l~g---H~-~~V~svafsp~~~dg~~LaSgs~Dg~ 289 (1331)
+.++| -+....+.++-+.+-+|.-|| ..+|..... ..++.++. .+ -..-.+++.. +|.+.+++-..++
T Consensus 161 Ngl~W--d~d~K~fY~iDsln~~V~a~dyd~~tG~~snr-~~i~dlrk~~~~e~~~PDGm~ID~---eG~L~Va~~ng~~ 234 (310)
T KOG4499|consen 161 NGLAW--DSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNR-KVIFDLRKSQPFESLEPDGMTIDT---EGNLYVATFNGGT 234 (310)
T ss_pred ccccc--cccCcEEEEEccCceEEeeeecCCCcccccCc-ceeEEeccCCCcCCCCCCcceEcc---CCcEEEEEecCcE
Confidence 44555 233345567778888998888 556653221 11111111 00 1122345554 7788888888999
Q ss_pred eEeeeccchhhhcccCCCCcccccccccccCCCCC
Q 000722 290 LAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAP 324 (1331)
Q Consensus 290 IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafsp 324 (1331)
|...|..+|+.+.+++ -.+..|+|++|--
T Consensus 235 V~~~dp~tGK~L~eik------lPt~qitsccFgG 263 (310)
T KOG4499|consen 235 VQKVDPTTGKILLEIK------LPTPQITSCCFGG 263 (310)
T ss_pred EEEECCCCCcEEEEEE------cCCCceEEEEecC
Confidence 9999999999888753 2366777888854
No 431
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=72.49 E-value=3.4 Score=47.63 Aligned_cols=63 Identities=22% Similarity=0.285 Sum_probs=46.9
Q ss_pred HHHHhhhhccccccchHHHHHHHHHHHhcccccccccccccccchhhhcccccchhhhhhhHHHHhh
Q 000722 1019 KEFLDLIDAADATGQANIAREALKRLAAAGSVKGALQGHELRGLALRLANHGELTRLSGLVTNLISL 1085 (1331)
Q Consensus 1019 ~~w~~l~~~al~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~ll~~~~g~~~~l~~l~~~~~~~ 1085 (1331)
..|..||..|.--||+.+|..||+-+- ++.+=.+.-|..|..|-...|++++.+.|.+.|...
T Consensus 396 DvWYNlg~vaV~iGD~nlA~rcfrlaL----~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 396 DVWYNLGFVAVTIGDFNLAKRCFRLAL----TSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred hhhhccceeEEeccchHHHHHHHHHHh----ccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 689999999999999999999999772 122333334566777777777777777776666654
No 432
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=72.40 E-value=41 Score=40.79 Aligned_cols=116 Identities=6% Similarity=-0.026 Sum_probs=69.9
Q ss_pred CCCCCCCCceEEEEEeeccee-EeeeecccCCCCCc---cccccccceeeehhhcccCCCcceEeecCC---Cceeeeee
Q 000722 125 SPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPK---QELDNKSLVCMEFLSRSAVGDVPLVAFGSS---DGVIRVLS 197 (1331)
Q Consensus 125 svafspdg~~lLasgs~d~iI-vwDl~t~~~~~i~~---~~~h~~~V~~Vaf~P~s~Spdg~~LasGs~---DGtIrlWD 197 (1331)
.++++|+|...+++-..+..+ ++|..+..... .. ..........+.+ ++++.++.+... ++.+...|
T Consensus 164 ~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v-----~~~g~~~yV~~~~~~~~~v~~id 237 (381)
T COG3391 164 GVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GSVGSLVGVGTGPAGIAV-----DPDGNRVYVANDGSGSNNVLKID 237 (381)
T ss_pred eEEECCCCCeEEEEecCCCeEEEEeCCCcceec-cccccccccCCCCceEEE-----CCCCCEEEEEeccCCCceEEEEe
Confidence 466789998566666555555 66866543221 11 1122334456777 678886655433 36899999
Q ss_pred hhhheeehh-hcCCCccchhhhhHhhhccccEEEeec-CCCceEEEEeccCCCcc
Q 000722 198 MISWKLVRR-YTGGHKGSISCLMTFMASSGEALLVSG-GSDGLLILWSADHGQDS 250 (1331)
Q Consensus 198 l~t~~~v~~-~~~gH~~~V~~vawf~~spdg~lLaSg-s~DgtIrVWDl~tg~~~ 250 (1331)
..++..... ...+.. ....+. .+|+|..+.+. +..+.+.+-|..+....
T Consensus 238 ~~~~~v~~~~~~~~~~-~~~~v~---~~p~g~~~yv~~~~~~~V~vid~~~~~v~ 288 (381)
T COG3391 238 TATGNVTATDLPVGSG-APRGVA---VDPAGKAAYVANSQGGTVSVIDGATDRVV 288 (381)
T ss_pred CCCceEEEeccccccC-CCCcee---ECCCCCEEEEEecCCCeEEEEeCCCCcee
Confidence 888766654 221222 334444 78888888776 44588888887776543
No 433
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=72.03 E-value=12 Score=40.29 Aligned_cols=141 Identities=14% Similarity=0.030 Sum_probs=80.4
Q ss_pred cccCCchhhhHHHhh---hccc---cchhHHHHHhhcccccccccCCC-------cccceee---eeccccchHHHHHHh
Q 000722 912 AAYGDSVSAVKWASR---LGRE---HHDDLAQFMLGMGYATEALHLPG-------ISKRLEF---DLAMQSNDLKRALQC 975 (1331)
Q Consensus 912 ~~~~~~~~a~~~~~~---i~~~---~~~~~a~fl~~~g~~e~Al~~~~-------ds~~~~f---~la~~~g~l~~a~~~ 975 (1331)
..+|++++|.+++.+ ..+. .+..++..+..+|-.++|+.... ......+ .+.++.|+++.|.+.
T Consensus 42 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~ 121 (234)
T TIGR02521 42 LEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQ 121 (234)
T ss_pred HHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHH
Confidence 446777777776665 1211 24556666666666665544332 1112222 223466788888877
Q ss_pred hhhcccccccCCCCCCCChhhhcccccchhhHHHHHHHHHHHHHHHHhhhhccccccchHHHHHHHHHHHhccccccccc
Q 000722 976 LITMSNSRDIGQDHPGLDLNDILTLTTKKENIVEAVQGIVKFAKEFLDLIDAADATGQANIAREALKRLAAAGSVKGALQ 1055 (1331)
Q Consensus 976 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~~~al~~g~~~~a~~~~~~~~~~~~~~~~~~ 1055 (1331)
.......... . .....|..+|......|+++.|+++|.++-.... ...
T Consensus 122 ~~~~~~~~~~--~---------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~-- 169 (234)
T TIGR02521 122 FEQAIEDPLY--P---------------------------QPARSLENAGLCALKAGDFDKAEKYLTRALQIDP-QRP-- 169 (234)
T ss_pred HHHHHhcccc--c---------------------------cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCh--
Confidence 6332111000 0 0114677789999999999999999998843321 000
Q ss_pred ccccccchhhhcccccchhhhhhhHHHHhh
Q 000722 1056 GHELRGLALRLANHGELTRLSGLVTNLISL 1085 (1331)
Q Consensus 1056 ~~~~~~l~ll~~~~g~~~~l~~l~~~~~~~ 1085 (1331)
.-+..|..+|...|+.++..++.+.+...
T Consensus 170 -~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 198 (234)
T TIGR02521 170 -ESLLELAELYYLRGQYKDARAYLERYQQT 198 (234)
T ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 02345666777777777766666665554
No 434
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=71.90 E-value=13 Score=40.70 Aligned_cols=150 Identities=15% Similarity=0.048 Sum_probs=77.8
Q ss_pred CCceeEeecCCC--ceeeeccccceEEeeeccCCcccchhhhhhhhhhcccccccCCCCcccccCCceeEEeeecchhhH
Q 000722 22 THPWLVTADASD--HVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRGGSVKQVNFYDDDVRF 99 (1331)
Q Consensus 22 dg~~LaSgs~DG--tV~VWD~~tg~~i~s~~~~~~~~i~~vspdg~~Lasgs~d~~g~~l~~l~gg~V~sVaf~DgtIrv 99 (1331)
+|.++.+.+.-| .|++||+.+|+.+.+-.... +. .+..|. +-.+..++.+.|.++.--.
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~-~~---------~FgEGi---------t~~gd~~y~LTw~egvaf~ 115 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAP-DT---------VFGEGI---------TKLGDYFYQLTWKEGVAFK 115 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCC-cc---------ccccce---------eeccceEEEEEeccceeEE
Confidence 356666665543 79999999999887765331 11 111111 1125789999999998888
Q ss_pred HHHhhhccccccCCcccccccccccCCCCCCCCceEEEEEeecceeEe-eeecccCCCCCccccccc---cceeeehhhc
Q 000722 100 WQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFL-DLVTMRGRDIPKQELDNK---SLVCMEFLSR 175 (1331)
Q Consensus 100 Wdl~tg~~l~~~~~~~~~~~~~~V~svafspdg~~lLasgs~d~iIvw-Dl~t~~~~~i~~~~~h~~---~V~~Vaf~P~ 175 (1331)
+|..+-+++...... +.=+.+ ..|+++++.+.+ ...+.| |.++.............. .++.+.|.
T Consensus 116 ~d~~t~~~lg~~~y~------GeGWgL--t~d~~~LimsdG-satL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-- 184 (262)
T COG3823 116 YDADTLEELGRFSYE------GEGWGL--TSDDKNLIMSDG-SATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-- 184 (262)
T ss_pred EChHHhhhhcccccC------Ccceee--ecCCcceEeeCC-ceEEEecCHHHhhhcceEEEEECCeecccccceeee--
Confidence 888887665211111 111222 335554444433 344455 776643221111122222 23445552
Q ss_pred ccCCCcceEeecCCCceeeeeehhhheeeh
Q 000722 176 SAVGDVPLVAFGSSDGVIRVLSMISWKLVR 205 (1331)
Q Consensus 176 s~Spdg~~LasGs~DGtIrlWDl~t~~~v~ 205 (1331)
+|...+-.=.+..|...|..+|+.+.
T Consensus 185 ----dG~lyANVw~t~~I~rI~p~sGrV~~ 210 (262)
T COG3823 185 ----DGELYANVWQTTRIARIDPDSGRVVA 210 (262)
T ss_pred ----ccEEEEeeeeecceEEEcCCCCcEEE
Confidence 45544444344445555666665543
No 435
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=71.90 E-value=7.3 Score=31.81 Aligned_cols=31 Identities=13% Similarity=0.148 Sum_probs=26.5
Q ss_pred CcEEEEEeecCC---ceeEeecCCCceeeecccc
Q 000722 12 DKIVKIQLHPTH---PWLVTADASDHVSVWNWEH 42 (1331)
Q Consensus 12 ~~V~~lafSPdg---~~LaSgs~DGtV~VWD~~t 42 (1331)
+.|.++.|||.. .+|+-+-..|.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 468999999854 4888888999999999985
No 436
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=71.81 E-value=7.7 Score=42.51 Aligned_cols=89 Identities=15% Similarity=0.083 Sum_probs=59.3
Q ss_pred HHHHhhhhccccccchHHHHHHHHHHHhcccccccccccccccchh-hhccccc--chhhhhhhHHHHhhccCh-----h
Q 000722 1019 KEFLDLIDAADATGQANIAREALKRLAAAGSVKGALQGHELRGLAL-RLANHGE--LTRLSGLVTNLISLGLGR-----E 1090 (1331)
Q Consensus 1019 ~~w~~l~~~al~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~l-l~~~~g~--~~~l~~l~~~~~~~~~~~-----~ 1090 (1331)
.-|..||..++..|+++.|.+||+++-...--+.. -+..+.. +|...|+ .++..++.+.+.+..... +
T Consensus 74 ~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~----~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~ 149 (198)
T PRK10370 74 EQWALLGEYYLWRNDYDNALLAYRQALQLRGENAE----LYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALML 149 (198)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHH
Confidence 79999999999999999999999999543311000 1223444 3455566 377888888777766541 1
Q ss_pred hhhhhhhcCchHHHHHHhhhh
Q 000722 1091 AAFSAAILGDNALMEKAWQDT 1111 (1331)
Q Consensus 1091 ~af~~~~lgd~~~~~~~l~~~ 1111 (1331)
.++.+..+||++++++.|.+.
T Consensus 150 LA~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 150 LASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred HHHHHHHcCCHHHHHHHHHHH
Confidence 222233778888888887754
No 437
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=71.23 E-value=6.9 Score=47.61 Aligned_cols=121 Identities=14% Similarity=0.141 Sum_probs=70.8
Q ss_pred cceeeehhhcccCCCcceEeecCCCceeeeeehhhheeeh----------------------------------------
Q 000722 166 SLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVR---------------------------------------- 205 (1331)
Q Consensus 166 ~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~~~v~---------------------------------------- 205 (1331)
.|+++.| +++...|++|...|.|.||.+...+.-.
T Consensus 3 ~v~~vs~-----a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~ 77 (395)
T PF08596_consen 3 SVTHVSF-----APETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFL 77 (395)
T ss_dssp -EEEEEE-----ETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEE
T ss_pred eEEEEEe-----cCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccC
Confidence 4666777 5566678888888888888764321110
Q ss_pred --hhcCCCccchhhhhHhhhccccEEEeecCCCceEEEEeccCCCccccccccce---eeeccCcEEEEEechh--ccCC
Q 000722 206 --RYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLS---LKAHDGGVVAVELSRV--MGGS 278 (1331)
Q Consensus 206 --~~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrVWDl~tg~~~~~~~~~~~---l~gH~~~V~svafsp~--~~dg 278 (1331)
.+.....+.|++++ .+ |=.+++.|..+|.+.|.|++....+..- .... -......|+++.|... .+|+
T Consensus 78 P~~l~~~~~g~vtal~---~S-~iGFvaigy~~G~l~viD~RGPavI~~~-~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ 152 (395)
T PF08596_consen 78 PLTLLDAKQGPVTALK---NS-DIGFVAIGYESGSLVVIDLRGPAVIYNE-NIRESFLSKSSSSYVTSIEFSVMTLGGDG 152 (395)
T ss_dssp EEEEE---S-SEEEEE---E--BTSEEEEEETTSEEEEEETTTTEEEEEE-EGGG--T-SS----EEEEEEEEEE-TTSS
T ss_pred chhheeccCCcEeEEe---cC-CCcEEEEEecCCcEEEEECCCCeEEeec-cccccccccccccCeeEEEEEEEecCCCc
Confidence 00012346677776 33 4458999999999999999877655431 1111 1123446888888732 1222
Q ss_pred ---CcEEEeecCceeEeeecc
Q 000722 279 ---PQLITIGADKTLAIWDTV 296 (1331)
Q Consensus 279 ---~~LaSgs~Dg~IrIWDl~ 296 (1331)
..+++|...|.+.+|.+.
T Consensus 153 ySSi~L~vGTn~G~v~~fkIl 173 (395)
T PF08596_consen 153 YSSICLLVGTNSGNVLTFKIL 173 (395)
T ss_dssp SEEEEEEEEETTSEEEEEEEE
T ss_pred ccceEEEEEeCCCCEEEEEEe
Confidence 578889999999999875
No 438
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=71.15 E-value=3.8 Score=41.16 Aligned_cols=26 Identities=15% Similarity=0.110 Sum_probs=24.0
Q ss_pred HHHHhhhhccccccchHHHHHHHHHH
Q 000722 1019 KEFLDLIDAADATGQANIAREALKRL 1044 (1331)
Q Consensus 1019 ~~w~~l~~~al~~g~~~~a~~~~~~~ 1044 (1331)
..|..+|......|+++.|+++|+++
T Consensus 52 ~~~~~la~~~~~~~~~~~A~~~~~~~ 77 (135)
T TIGR02552 52 RYWLGLAACCQMLKEYEEAIDAYALA 77 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78889999999999999999999988
No 439
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=71.09 E-value=64 Score=41.98 Aligned_cols=22 Identities=14% Similarity=0.267 Sum_probs=16.7
Q ss_pred hhccCCCCccchhHHHHHhccc
Q 000722 1142 KEVDHTPTAKTDAAAAFLASLE 1163 (1331)
Q Consensus 1142 ~~~~~~~~~~~~~~~~~~~~~~ 1163 (1331)
+++.-.|..++-.=+.+|..+.
T Consensus 336 ~~l~~a~~~~~~~Em~llrl~~ 357 (709)
T PRK08691 336 RDLSLAPDEYAGFMMTLLRMLA 357 (709)
T ss_pred HHhccCCCHHHHHHHHHHHHHh
Confidence 4556688888888888888776
No 440
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=70.79 E-value=7.9 Score=50.44 Aligned_cols=164 Identities=12% Similarity=0.010 Sum_probs=83.8
Q ss_pred ecccCCchhhhHHHhh---hccc---cchhHHHHHhhcccccccccCCCc-------ccceee--eeccccchHHHHHHh
Q 000722 911 LAAYGDSVSAVKWASR---LGRE---HHDDLAQFMLGMGYATEALHLPGI-------SKRLEF--DLAMQSNDLKRALQC 975 (1331)
Q Consensus 911 ~~~~~~~~~a~~~~~~---i~~~---~~~~~a~fl~~~g~~e~Al~~~~d-------s~~~~f--~la~~~g~l~~a~~~ 975 (1331)
+...|++++|++.+.+ +.+. .+..+++-+..+|-+++|+..... ++...+ -..++.|+++.|.+.
T Consensus 120 l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~~l~~~g~~~eA~~~ 199 (656)
T PRK15174 120 LLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCLSFLNKSRLPEDHDL 199 (656)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHH
Confidence 3455777777776665 2222 245566667777777776553311 011111 123456777777766
Q ss_pred hhhcccccccCCCCCCCChhhhcccccchhhHHHHHHHHHHHHHHHHhhhhccccccchHHHHHHHHHHHhccccccccc
Q 000722 976 LITMSNSRDIGQDHPGLDLNDILTLTTKKENIVEAVQGIVKFAKEFLDLIDAADATGQANIAREALKRLAAAGSVKGALQ 1055 (1331)
Q Consensus 976 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~~~al~~g~~~~a~~~~~~~~~~~~~~~~~~ 1055 (1331)
+..+-.....+.. ..+..++......|+++.|+++|+++-... +..
T Consensus 200 ~~~~l~~~~~~~~------------------------------~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~--- 245 (656)
T PRK15174 200 ARALLPFFALERQ------------------------------ESAGLAVDTLCAVGKYQEAIQTGESALARG-LDG--- 245 (656)
T ss_pred HHHHHhcCCCcch------------------------------hHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCC---
Confidence 6332111000100 223344667778899999999999873221 110
Q ss_pred ccccccchhhhcccccchh----hhhhhHHHHhhccChhhhhh-----hhhcCchHHHHHHh
Q 000722 1056 GHELRGLALRLANHGELTR----LSGLVTNLISLGLGREAAFS-----AAILGDNALMEKAW 1108 (1331)
Q Consensus 1056 ~~~~~~l~ll~~~~g~~~~----l~~l~~~~~~~~~~~~~af~-----~~~lgd~~~~~~~l 1108 (1331)
..-+..|..+|...|+.+. ...+.+.+....-....+.. ....|+.+++++.|
T Consensus 246 ~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l 307 (656)
T PRK15174 246 AALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLL 307 (656)
T ss_pred HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 0112356777788888764 34444444433221011111 11567777776544
No 441
>PHA02790 Kelch-like protein; Provisional
Probab=70.60 E-value=22 Score=44.59 Aligned_cols=141 Identities=9% Similarity=-0.015 Sum_probs=69.4
Q ss_pred CCceEEEEEeecc---eeEeeeecccCCCCCccccccccceeeehhhcccCCCcceEeecCCCc---eeeeeehhhhee-
Q 000722 131 KGRHFLVICCVNK---AIFLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDG---VIRVLSMISWKL- 203 (1331)
Q Consensus 131 dg~~lLasgs~d~---iIvwDl~t~~~~~i~~~~~h~~~V~~Vaf~P~s~Spdg~~LasGs~DG---tIrlWDl~t~~~- 203 (1331)
++. +.+.|+.+. +-+||..+.+...+..+.........+.+ +|...+.|+.++ .+..||..+.+.
T Consensus 318 ~~~-iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~-------~g~IYviGG~~~~~~~ve~ydp~~~~W~ 389 (480)
T PHA02790 318 NNK-LYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASI-------NNVIYVIGGHSETDTTTEYLLPNHDQWQ 389 (480)
T ss_pred CCE-EEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEE-------CCEEEEecCcCCCCccEEEEeCCCCEEE
Confidence 454 667666532 33677655433333333222222233344 677778877554 466788765433
Q ss_pred -ehhhcCCCccchhhhhHhhhccccEEEeecCCCceEEEEeccCCCccccccccceeeeccCcEEEEEechhccCCCcEE
Q 000722 204 -VRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLI 282 (1331)
Q Consensus 204 -v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~La 282 (1331)
+..+. +...-.++ ..-++.+.+.|+ .+.+||..+++. .....+....... +++.. ++.+.+
T Consensus 390 ~~~~m~--~~r~~~~~----~~~~~~IYv~GG---~~e~ydp~~~~W----~~~~~m~~~r~~~-~~~v~----~~~IYv 451 (480)
T PHA02790 390 FGPSTY--YPHYKSCA----LVFGRRLFLVGR---NAEFYCESSNTW----TLIDDPIYPRDNP-ELIIV----DNKLLL 451 (480)
T ss_pred eCCCCC--CccccceE----EEECCEEEEECC---ceEEecCCCCcE----eEcCCCCCCcccc-EEEEE----CCEEEE
Confidence 22221 11111122 133677777774 467888876542 2222222111222 23333 567888
Q ss_pred EeecC-----ceeEeeeccc
Q 000722 283 TIGAD-----KTLAIWDTVS 297 (1331)
Q Consensus 283 Sgs~D-----g~IrIWDl~t 297 (1331)
.||.+ ..|..||..+
T Consensus 452 iGG~~~~~~~~~ve~Yd~~~ 471 (480)
T PHA02790 452 IGGFYRGSYIDTIEVYNNRT 471 (480)
T ss_pred ECCcCCCcccceEEEEECCC
Confidence 88865 3455666543
No 442
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=70.51 E-value=59 Score=38.16 Aligned_cols=116 Identities=10% Similarity=0.128 Sum_probs=58.6
Q ss_pred CccchhhhhHhhhccccEEEeecCCCceEEEEeccCCCccccccccceeeeccCcEEEEEechhccCCCcEEEeecCcee
Q 000722 211 HKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTL 290 (1331)
Q Consensus 211 H~~~V~~vawf~~spdg~lLaSgs~DgtIrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~I 290 (1331)
-.+.+..+. .+++|.++++++.-....-||..... +.+.. ..-...|.+|.|.| ++.+.+. ...|.|
T Consensus 143 ~~gs~~~~~---r~~dG~~vavs~~G~~~~s~~~G~~~----w~~~~--r~~~~riq~~gf~~---~~~lw~~-~~Gg~~ 209 (302)
T PF14870_consen 143 TSGSINDIT---RSSDGRYVAVSSRGNFYSSWDPGQTT----WQPHN--RNSSRRIQSMGFSP---DGNLWML-ARGGQI 209 (302)
T ss_dssp ----EEEEE---E-TTS-EEEEETTSSEEEEE-TT-SS-----EEEE----SSS-EEEEEE-T---TS-EEEE-ETTTEE
T ss_pred CcceeEeEE---ECCCCcEEEEECcccEEEEecCCCcc----ceEEc--cCccceehhceecC---CCCEEEE-eCCcEE
Confidence 345555554 67899999888877777788754322 11111 22346799999999 6555443 478888
Q ss_pred Eeee-ccchhhhcccCCCCcccccccccccCCCCCCCceeeeeecceeeeee
Q 000722 291 AIWD-TVSFKELRRIKPVPKLACHSVASWCHPRAPNLDILTCVKDSHIWAIE 341 (1331)
Q Consensus 291 rIWD-l~t~~~l~~~~~~~~l~~H~~~V~svafspdg~lLa~s~Dg~IWdl~ 341 (1331)
+.=+ ......+.. +........-.+..++|.+++.+.+++..+.|+.-.
T Consensus 210 ~~s~~~~~~~~w~~--~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l~~S~ 259 (302)
T PF14870_consen 210 QFSDDPDDGETWSE--PIIPIKTNGYGILDLAYRPPNEIWAVGGSGTLLVST 259 (302)
T ss_dssp EEEE-TTEEEEE-----B-TTSS--S-EEEEEESSSS-EEEEESTT-EEEES
T ss_pred EEccCCCCcccccc--ccCCcccCceeeEEEEecCCCCEEEEeCCccEEEeC
Confidence 8766 222222211 111122223346688899888888777777765433
No 443
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=70.22 E-value=4.2 Score=30.31 Aligned_cols=26 Identities=19% Similarity=0.101 Sum_probs=23.8
Q ss_pred HHHHhhhhccccccchHHHHHHHHHH
Q 000722 1019 KEFLDLIDAADATGQANIAREALKRL 1044 (1331)
Q Consensus 1019 ~~w~~l~~~al~~g~~~~a~~~~~~~ 1044 (1331)
+.|..||.....+|+++.|+++|+++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~a 27 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKA 27 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 67999999999999999999999998
No 444
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=70.15 E-value=41 Score=39.59 Aligned_cols=138 Identities=10% Similarity=-0.073 Sum_probs=75.5
Q ss_pred ccceeeehhhcccCCCcceEeecCC-----------CceeeeeehhhheeehhhcCCCccchhhhhHhhhccccEEEeec
Q 000722 165 KSLVCMEFLSRSAVGDVPLVAFGSS-----------DGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSG 233 (1331)
Q Consensus 165 ~~V~~Vaf~P~s~Spdg~~LasGs~-----------DGtIrlWDl~t~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSg 233 (1331)
...+.+.. .|+|.+.++-.. -|.|+.+|. .+..++.+. .|-..-+.++ ++||++.|..+
T Consensus 111 ~r~ND~~v-----~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~-~~~~~~NGla---~SpDg~tly~a 180 (307)
T COG3386 111 NRPNDGVV-----DPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLD-DDLTIPNGLA---FSPDGKTLYVA 180 (307)
T ss_pred CCCCceeE-----cCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeec-CcEEecCceE---ECCCCCEEEEE
Confidence 34555666 567765554433 133444443 344444443 5556667787 79999665544
Q ss_pred -CCCceEEEEeccC--CCccccccccceeeeccCcEEEEEechhccCCCcEEEeecCc-eeEeeeccchhhhcccCCCCc
Q 000722 234 -GSDGLLILWSADH--GQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADK-TLAIWDTVSFKELRRIKPVPK 309 (1331)
Q Consensus 234 -s~DgtIrVWDl~t--g~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg-~IrIWDl~t~~~l~~~~~~~~ 309 (1331)
+..+.|..|++.. +..... .....+..+.+..-.++... ++.+-+++..+| .|.+|+.. ++.+..+.
T Consensus 181 DT~~~~i~r~~~d~~~g~~~~~-~~~~~~~~~~G~PDG~~vDa---dG~lw~~a~~~g~~v~~~~pd-G~l~~~i~---- 251 (307)
T COG3386 181 DTPANRIHRYDLDPATGPIGGR-RGFVDFDEEPGLPDGMAVDA---DGNLWVAAVWGGGRVVRFNPD-GKLLGEIK---- 251 (307)
T ss_pred eCCCCeEEEEecCcccCccCCc-ceEEEccCCCCCCCceEEeC---CCCEEEecccCCceEEEECCC-CcEEEEEE----
Confidence 4558888887753 221111 11111222344455666665 666665555554 89999988 77666532
Q ss_pred ccccccccccCCCC
Q 000722 310 LACHSVASWCHPRA 323 (1331)
Q Consensus 310 l~~H~~~V~svafs 323 (1331)
.....+++++|-
T Consensus 252 --lP~~~~t~~~Fg 263 (307)
T COG3386 252 --LPVKRPTNPAFG 263 (307)
T ss_pred --CCCCCCccceEe
Confidence 222445566664
No 445
>PRK13616 lipoprotein LpqB; Provisional
Probab=69.82 E-value=25 Score=45.12 Aligned_cols=152 Identities=13% Similarity=0.021 Sum_probs=82.3
Q ss_pred cccceeeehhhcccCCCcceEeecC------CCc--eeeeeehhhheeehhhcCCCccchhhhhHhhhccccEEEeecCC
Q 000722 164 NKSLVCMEFLSRSAVGDVPLVAFGS------SDG--VIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGS 235 (1331)
Q Consensus 164 ~~~V~~Vaf~P~s~Spdg~~LasGs------~DG--tIrlWDl~t~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~ 235 (1331)
...+...++ +++|..++... .|. .|.+++.. +.. +.+..+. ..+.-. ++|+|..|.+.+.
T Consensus 349 ~~~vsspai-----SpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~g~--~~t~Ps---WspDG~~lw~v~d 416 (591)
T PRK13616 349 MGNITSAAL-----SRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLEGH--SLTRPS---WSLDADAVWVVVD 416 (591)
T ss_pred ccCcccceE-----CCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeecCC--CCCCce---ECCCCCceEEEec
Confidence 346777888 78898876654 243 45555542 222 2222232 244444 5788776666543
Q ss_pred C------------ceEEEEeccCCCccccccccceeeeccCcEEEEEechhccCCCcEEEeecCceeEe---eeccchhh
Q 000722 236 D------------GLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAI---WDTVSFKE 300 (1331)
Q Consensus 236 D------------gtIrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrI---WDl~t~~~ 300 (1331)
. +.+.+.++..+... ....+.|..+.|+| ||..++... ++.|.+ -....|.
T Consensus 417 g~~~~~v~~~~~~gql~~~~vd~ge~~---------~~~~g~Issl~wSp---DG~RiA~i~-~g~v~Va~Vvr~~~G~- 482 (591)
T PRK13616 417 GNTVVRVIRDPATGQLARTPVDASAVA---------SRVPGPISELQLSR---DGVRAAMII-GGKVYLAVVEQTEDGQ- 482 (591)
T ss_pred CcceEEEeccCCCceEEEEeccCchhh---------hccCCCcCeEEECC---CCCEEEEEE-CCEEEEEEEEeCCCCc-
Confidence 2 22222233322210 02345799999999 888777655 477776 3433443
Q ss_pred hcccCCCCccc-ccccccccCCCCCCCceeeeeecc--eeeeeec
Q 000722 301 LRRIKPVPKLA-CHSVASWCHPRAPNLDILTCVKDS--HIWAIEH 342 (1331)
Q Consensus 301 l~~~~~~~~l~-~H~~~V~svafspdg~lLa~s~Dg--~IWdl~~ 342 (1331)
.++.....+. +-...+.++.|..++.++.+..++ .+|.+.-
T Consensus 483 -~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v~v 526 (591)
T PRK13616 483 -YALTNPREVGPGLGDTAVSLDWRTGDSLVVGRSDPEHPVWYVNL 526 (591)
T ss_pred -eeecccEEeecccCCccccceEecCCEEEEEecCCCCceEEEec
Confidence 2221111122 222335678999999977554433 3787663
No 446
>PF07462 MSP1_C: Merozoite surface protein 1 (MSP1) C-terminus; InterPro: IPR010901 This entry represents the C-terminal region of merozoite surface protein 1 (MSP1), which is found in a number of Plasmodium species. MSP-1 is a 200 kDa protein expressed on the surface of the Plasmodium vivax merozoite. MSP-1 of Plasmodium species is synthesised as a high-molecular-weight precursor and then processed into several fragments. At the time of red cell invasion by the merozoite, only the 19 kDa C-terminal fragment (MSP-119), which contains two epidermal growth factor-like domains, remains on the surface. Antibodies against MSP-119 inhibit merozoite entry into red cells, and immunisation with MSP-119 protects monkeys from challenging infections. Hence, MSP-119 is considered a promising vaccine candidate [].; GO: 0009405 pathogenesis, 0016020 membrane
Probab=68.31 E-value=7.6 Score=47.61 Aligned_cols=20 Identities=5% Similarity=0.195 Sum_probs=13.5
Q ss_pred ccCCCcHHHHHHHHHHHHhh
Q 000722 1123 AHGRPSLKNLVEAWNKMLQK 1142 (1331)
Q Consensus 1123 ~~~~~~~~~~~~~w~~~l~~ 1142 (1331)
+|..|-|.-++...|+-+..
T Consensus 213 sYlSsgLhHv~tElKeii~n 232 (574)
T PF07462_consen 213 SYLSSGLHHVFTELKEIIKN 232 (574)
T ss_pred hhhhhhHHHHHHHHHHHHhc
Confidence 56666677777777777653
No 447
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=67.69 E-value=5.1 Score=30.08 Aligned_cols=26 Identities=23% Similarity=0.188 Sum_probs=23.7
Q ss_pred HHHHhhhhccccccchHHHHHHHHHH
Q 000722 1019 KEFLDLIDAADATGQANIAREALKRL 1044 (1331)
Q Consensus 1019 ~~w~~l~~~al~~g~~~~a~~~~~~~ 1044 (1331)
+-|..+|.....+|+++.|++||+++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~a 27 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRA 27 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHH
Confidence 67999999999999999999999998
No 448
>PHA03098 kelch-like protein; Provisional
Probab=67.60 E-value=29 Score=43.88 Aligned_cols=101 Identities=14% Similarity=0.130 Sum_probs=51.5
Q ss_pred EEEEEeec-------ceeEeeeecccCCCCCccccccccceeeehhhcccCCCcceEeecCCC-----ceeeeeehhhhe
Q 000722 135 FLVICCVN-------KAIFLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSD-----GVIRVLSMISWK 202 (1331)
Q Consensus 135 lLasgs~d-------~iIvwDl~t~~~~~i~~~~~h~~~V~~Vaf~P~s~Spdg~~LasGs~D-----GtIrlWDl~t~~ 202 (1331)
+++.|+.+ .+.++|..+.+...+............+.+ ++...+.|+.+ ..+..||..+.+
T Consensus 297 lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~-------~~~lyv~GG~~~~~~~~~v~~yd~~~~~ 369 (534)
T PHA03098 297 IYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVF-------NNRIYVIGGIYNSISLNTVESWKPGESK 369 (534)
T ss_pred EEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEE-------CCEEEEEeCCCCCEecceEEEEcCCCCc
Confidence 66666532 233557666544333332222223333444 57777788765 346678876543
Q ss_pred e--ehhhcCCCccchhhhhHhhhccccEEEeecCCC------ceEEEEeccCCC
Q 000722 203 L--VRRYTGGHKGSISCLMTFMASSGEALLVSGGSD------GLLILWSADHGQ 248 (1331)
Q Consensus 203 ~--v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~D------gtIrVWDl~tg~ 248 (1331)
. ...+. +...-.++ ..-++.+++.||.+ ..+..||..+++
T Consensus 370 W~~~~~lp--~~r~~~~~----~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~ 417 (534)
T PHA03098 370 WREEPPLI--FPRYNPCV----VNVNNLIYVIGGISKNDELLKTVECFSLNTNK 417 (534)
T ss_pred eeeCCCcC--cCCccceE----EEECCEEEEECCcCCCCcccceEEEEeCCCCe
Confidence 2 22221 11111111 12367788888742 457888887654
No 449
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=67.13 E-value=18 Score=43.28 Aligned_cols=69 Identities=14% Similarity=0.112 Sum_probs=42.1
Q ss_pred CCCCceEEEEEe---------ecceeEeeeecccCCCCCccccccccceeeehhhcccCCCcceEeecCCCceeeeeehh
Q 000722 129 STKGRHFLVICC---------VNKAIFLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMI 199 (1331)
Q Consensus 129 spdg~~lLasgs---------~d~iIvwDl~t~~~~~i~~~~~h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~ 199 (1331)
|||++.+|+... .....++|+.+++...+... ...+....| +|+|+.++... ++.|.+++..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~---~~~~~~~~~-----sP~g~~~~~v~-~~nly~~~~~ 71 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP---PPKLQDAKW-----SPDGKYIAFVR-DNNLYLRDLA 71 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E---ETTBSEEEE------SSSTEEEEEE-TTEEEEESST
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC---cccccccee-----ecCCCeeEEEe-cCceEEEECC
Confidence 577875555332 22233567777554333222 567778888 78999998884 5789999987
Q ss_pred hheeehh
Q 000722 200 SWKLVRR 206 (1331)
Q Consensus 200 t~~~v~~ 206 (1331)
++...+.
T Consensus 72 ~~~~~~l 78 (353)
T PF00930_consen 72 TGQETQL 78 (353)
T ss_dssp TSEEEES
T ss_pred CCCeEEe
Confidence 7655443
No 450
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=66.98 E-value=4.6 Score=49.40 Aligned_cols=106 Identities=15% Similarity=0.065 Sum_probs=73.6
Q ss_pred eecccCCchhhhHHHhhhcccc------chhHHHHHhhcccccccccCC-------Ccccce-----eeeeccccchHHH
Q 000722 910 CLAAYGDSVSAVKWASRLGREH------HDDLAQFMLGMGYATEALHLP-------GISKRL-----EFDLAMQSNDLKR 971 (1331)
Q Consensus 910 ~~~~~~~~~~a~~~~~~i~~~~------~~~~a~fl~~~g~~e~Al~~~-------~ds~~~-----~f~la~~~g~l~~ 971 (1331)
.++..|||+.|.+.+.+..+.. +--.|+....+|-++.|.++. .+ .+. .-++.++.|+.+.
T Consensus 93 la~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~-~~l~~~~~~a~l~l~~~~~~~ 171 (409)
T TIGR00540 93 LKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGN-DNILVEIARTRILLAQNELHA 171 (409)
T ss_pred HHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc-CchHHHHHHHHHHHHCCCHHH
Confidence 5677799999999887733321 334467777778777655443 33 221 3667778899999
Q ss_pred HHHhhhhcccccccCCCCCCCChhhhcccccchhhHHHHHHHHHHHHHHHHhhhhccccccchHHHHHHHHHHHhc
Q 000722 972 ALQCLITMSNSRDIGQDHPGLDLNDILTLTTKKENIVEAVQGIVKFAKEFLDLIDAADATGQANIAREALKRLAAA 1047 (1331)
Q Consensus 972 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~~~al~~g~~~~a~~~~~~~~~~ 1047 (1331)
|++.+..+... ..++. .-+.-++...+.+|+.+.|++.+++....
T Consensus 172 Al~~l~~l~~~-~P~~~------------------------------~~l~ll~~~~~~~~d~~~a~~~l~~l~k~ 216 (409)
T TIGR00540 172 ARHGVDKLLEM-APRHK------------------------------EVLKLAEEAYIRSGAWQALDDIIDNMAKA 216 (409)
T ss_pred HHHHHHHHHHh-CCCCH------------------------------HHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 99998554333 12222 56778899999999999999999998644
No 451
>PHA03098 kelch-like protein; Provisional
Probab=66.54 E-value=33 Score=43.46 Aligned_cols=104 Identities=13% Similarity=0.141 Sum_probs=51.5
Q ss_pred CcceEeecCCC------ceeeeeehhhhee--ehhhcCCCccchhhhhHhhhccccEEEeecCCCc--------eEEEEe
Q 000722 180 DVPLVAFGSSD------GVIRVLSMISWKL--VRRYTGGHKGSISCLMTFMASSGEALLVSGGSDG--------LLILWS 243 (1331)
Q Consensus 180 dg~~LasGs~D------GtIrlWDl~t~~~--v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~Dg--------tIrVWD 243 (1331)
++...+.|+.+ ..+..||..+.+. +..+..++.. .++ ...++.+++.|+.++ .+.+||
T Consensus 389 ~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~--~~~----~~~~~~iyv~GG~~~~~~~~~~~~v~~yd 462 (534)
T PHA03098 389 NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYG--GCA----IYHDGKIYVIGGISYIDNIKVYNIVESYN 462 (534)
T ss_pred CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccC--ceE----EEECCEEEEECCccCCCCCcccceEEEec
Confidence 56777777732 4578889875433 2222111111 111 223667777777532 378888
Q ss_pred ccCCCccccccccceeeeccCcEEEEEechhccCCCcEEEeecC-----ceeEeeeccch
Q 000722 244 ADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGAD-----KTLAIWDTVSF 298 (1331)
Q Consensus 244 l~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~D-----g~IrIWDl~t~ 298 (1331)
..+++... ...+.........+.+ ++.+++.||.+ +.|.+||..+.
T Consensus 463 ~~~~~W~~----~~~~~~~r~~~~~~~~-----~~~iyv~GG~~~~~~~~~v~~yd~~~~ 513 (534)
T PHA03098 463 PVTNKWTE----LSSLNFPRINASLCIF-----NNKIYVVGGDKYEYYINEIEVYDDKTN 513 (534)
T ss_pred CCCCceee----CCCCCcccccceEEEE-----CCEEEEEcCCcCCcccceeEEEeCCCC
Confidence 87765321 1111111111112222 45677777654 35667776543
No 452
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=66.36 E-value=17 Score=47.41 Aligned_cols=39 Identities=8% Similarity=-0.248 Sum_probs=20.5
Q ss_pred ecccCCchhhhHHHhh---hcccc---chhHHHHHhhcccccccc
Q 000722 911 LAAYGDSVSAVKWASR---LGREH---HDDLAQFMLGMGYATEAL 949 (1331)
Q Consensus 911 ~~~~~~~~~a~~~~~~---i~~~~---~~~~a~fl~~~g~~e~Al 949 (1331)
+...|.+|+|.+++.+ +.+++ +-..|.-|.++++.|+||
T Consensus 96 ~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~ 140 (694)
T PRK15179 96 LEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGR 140 (694)
T ss_pred HHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHH
Confidence 3445666777666666 33333 333444555555555554
No 453
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=66.05 E-value=18 Score=46.07 Aligned_cols=24 Identities=21% Similarity=0.252 Sum_probs=11.2
Q ss_pred ccccchhhcCCCCCceecCCCCCC
Q 000722 1165 PKLTSLAEAGKKPPIEILPPGMPS 1188 (1331)
Q Consensus 1165 ~~~~~~~~~~~~~~~~~~~~~~~~ 1188 (1331)
++...|.-+...+|+..=+|+-|+
T Consensus 509 ae~~al~s~~~~~~~~~~iP~PP~ 532 (1102)
T KOG1924|consen 509 AEKQALSSPSQLLPIDGGIPPPPP 532 (1102)
T ss_pred hhhhhccCcccCCCCCCCCCCCCC
Confidence 333444444555555554444443
No 454
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=64.73 E-value=14 Score=39.76 Aligned_cols=32 Identities=22% Similarity=0.132 Sum_probs=27.9
Q ss_pred HHHHHHHhhhhccccccchHHHHHHHHHHHhc
Q 000722 1016 KFAKEFLDLIDAADATGQANIAREALKRLAAA 1047 (1331)
Q Consensus 1016 ~~~~~w~~l~~~al~~g~~~~a~~~~~~~~~~ 1047 (1331)
....-|.+||+...+.|+++.|.+||.++.++
T Consensus 34 sir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~ 65 (177)
T PF10602_consen 34 SIRMALEDLADHYCKIGDLEEALKAYSRARDY 65 (177)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhh
Confidence 34478999999999999999999999999543
No 455
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=64.09 E-value=16 Score=36.14 Aligned_cols=92 Identities=16% Similarity=0.155 Sum_probs=62.6
Q ss_pred cchhhhcccccchhhhhhhHHHHhhccChhhhhhhhhcCchHHHHHHhhhhhhHHHHHHhhhccCCCcHHHHHHHHHHHH
Q 000722 1061 GLALRLANHGELTRLSGLVTNLISLGLGREAAFSAAILGDNALMEKAWQDTGMLAEAVLHAHAHGRPSLKNLVEAWNKML 1140 (1331)
Q Consensus 1061 ~l~ll~~~~g~~~~l~~l~~~~~~~~~~~~~af~~~~lgd~~~~~~~l~~~~~~~~A~~~A~~~~~~~~~~~~~~w~~~l 1140 (1331)
.|+.+|..+ +...|..+ +...|. =|++++++.|.+.|+|.|=+.|=+++| +-++.++.|++.-
T Consensus 4 aLlk~Yl~~-~~~~l~~l---lr~~N~-----------C~~~~~e~~L~~~~~~~eL~~lY~~kg--~h~~AL~ll~~l~ 66 (108)
T PF10366_consen 4 ALLKCYLET-NPSLLGPL---LRLPNY-----------CDLEEVEEVLKEHGKYQELVDLYQGKG--LHRKALELLKKLA 66 (108)
T ss_pred HHHHHHHHh-CHHHHHHH---HccCCc-----------CCHHHHHHHHHHcCCHHHHHHHHHccC--ccHHHHHHHHHHh
Confidence 356667777 66666666 332222 389999999999999999888877766 4579999999876
Q ss_pred h---hhccCCCCccchhH-HHHHhcccCccccc
Q 000722 1141 Q---KEVDHTPTAKTDAA-AAFLASLEEPKLTS 1169 (1331)
Q Consensus 1141 ~---~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 1169 (1331)
. ......+..+.... ..+|..|....+..
T Consensus 67 ~~~~~~~~~~~~~~~~~~iv~yL~~L~~~~~dL 99 (108)
T PF10366_consen 67 DEEDSDEEDPFLSGVKETIVQYLQKLGNEDLDL 99 (108)
T ss_pred cccccccccccccCchhHHHHHHHhCChhhhHH
Confidence 6 22333444444445 67888886555443
No 456
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=63.66 E-value=6.8 Score=49.65 Aligned_cols=161 Identities=15% Similarity=0.037 Sum_probs=111.0
Q ss_pred ccCCchhhhHHHhh-h--cccc--chhHHHHHhhcccccccccCCCccccee----e-eeccccchHHHHHHhhhhcccc
Q 000722 913 AYGDSVSAVKWASR-L--GREH--HDDLAQFMLGMGYATEALHLPGISKRLE----F-DLAMQSNDLKRALQCLITMSNS 982 (1331)
Q Consensus 913 ~~~~~~~a~~~~~~-i--~~~~--~~~~a~fl~~~g~~e~Al~~~~ds~~~~----f-~la~~~g~l~~a~~~~~~~~~~ 982 (1331)
.-|+..+|.+++.+ + ++.+ |-.+..|+...-++|.|.++..+ ...| | -+.+..++++.|.+..+- +=.
T Consensus 436 ~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~yEkawElsn~-~sarA~r~~~~~~~~~~~fs~~~~hle~-sl~ 513 (777)
T KOG1128|consen 436 LLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSLYEKAWELSNY-ISARAQRSLALLILSNKDFSEADKHLER-SLE 513 (777)
T ss_pred HhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHHHHHHHHHhhh-hhHHHHHhhccccccchhHHHHHHHHHH-Hhh
Confidence 44677888887776 2 2222 56677899999999999999877 4555 2 233445888888887611 000
Q ss_pred cccCCCCCCCChhhhcccccchhhHHHHHHHHHHHHHHHHhhhhccccccchHHHHHHHHHHHhcccccccccccccccc
Q 000722 983 RDIGQDHPGLDLNDILTLTTKKENIVEAVQGIVKFAKEFLDLIDAADATGQANIAREALKRLAAAGSVKGALQGHELRGL 1062 (1331)
Q Consensus 983 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~~~al~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l 1062 (1331)
....+. .-|-.+|-.|+..++.+.|.+||.++= ...|.++. -+..|
T Consensus 514 ~nplq~------------------------------~~wf~~G~~ALqlek~q~av~aF~rcv-tL~Pd~~e---aWnNl 559 (777)
T KOG1128|consen 514 INPLQL------------------------------GTWFGLGCAALQLEKEQAAVKAFHRCV-TLEPDNAE---AWNNL 559 (777)
T ss_pred cCccch------------------------------hHHHhccHHHHHHhhhHHHHHHHHHHh-hcCCCchh---hhhhh
Confidence 011122 789999999999999999999999982 33344444 67788
Q ss_pred hhhhcccccchhhhhhhHHHHhhccChhhhhh------hhhcCchHHHHHHhhh
Q 000722 1063 ALRLANHGELTRLSGLVTNLISLGLGREAAFS------AAILGDNALMEKAWQD 1110 (1331)
Q Consensus 1063 ~ll~~~~g~~~~l~~l~~~~~~~~~~~~~af~------~~~lgd~~~~~~~l~~ 1110 (1331)
+-.|...|++.+--...+.|.+-+.. +.-|= +--.|..++++++..+
T Consensus 560 s~ayi~~~~k~ra~~~l~EAlKcn~~-~w~iWENymlvsvdvge~eda~~A~~r 612 (777)
T KOG1128|consen 560 STAYIRLKKKKRAFRKLKEALKCNYQ-HWQIWENYMLVSVDVGEFEDAIKAYHR 612 (777)
T ss_pred hHHHHHHhhhHHHHHHHHHHhhcCCC-CCeeeechhhhhhhcccHHHHHHHHHH
Confidence 99999999999999998888886633 32221 2245666666665553
No 457
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=63.53 E-value=4.3 Score=46.95 Aligned_cols=69 Identities=19% Similarity=0.146 Sum_probs=42.1
Q ss_pred HHHHHhhhhccccc-cchHHHHHHHHHHHhcccccccccccccccchhhhcccccchhhhhhhHHHHhhccChhhhhhhh
Q 000722 1018 AKEFLDLIDAADAT-GQANIAREALKRLAAAGSVKGALQGHELRGLALRLANHGELTRLSGLVTNLISLGLGREAAFSAA 1096 (1331)
Q Consensus 1018 ~~~w~~l~~~al~~-g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~ll~~~~g~~~~l~~l~~~~~~~~~~~~~af~~~ 1096 (1331)
++...++|+..... |+++.|.++|+++.+ +|...|......+.. .++|-...
T Consensus 114 A~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~------------------~y~~e~~~~~a~~~~---------~~~A~l~~ 166 (282)
T PF14938_consen 114 AKCLKELAEIYEEQLGDYEKAIEYYQKAAE------------------LYEQEGSPHSAAECL---------LKAADLYA 166 (282)
T ss_dssp HHHHHHHHHHHCCTT--HHHHHHHHHHHHH------------------HHHHTT-HHHHHHHH---------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------HHHHCCChhhHHHHH---------HHHHHHHH
Confidence 36788899999999 999999999999942 333444333222220 12333333
Q ss_pred hcCchHHHHHHhhhhhh
Q 000722 1097 ILGDNALMEKAWQDTGM 1113 (1331)
Q Consensus 1097 ~lgd~~~~~~~l~~~~~ 1113 (1331)
.+|+++++++++.+.+.
T Consensus 167 ~l~~y~~A~~~~e~~~~ 183 (282)
T PF14938_consen 167 RLGRYEEAIEIYEEVAK 183 (282)
T ss_dssp HTT-HHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHH
Confidence 67888888888876654
No 458
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=63.17 E-value=27 Score=45.63 Aligned_cols=89 Identities=19% Similarity=0.017 Sum_probs=61.1
Q ss_pred HHHHHhhhhccccccchHHHHHHHHHHHhcccccccccccccccchhhhcccccchhhhhhhHHHHhhccChhhhhh---
Q 000722 1018 AKEFLDLIDAADATGQANIAREALKRLAAAGSVKGALQGHELRGLALRLANHGELTRLSGLVTNLISLGLGREAAFS--- 1094 (1331)
Q Consensus 1018 ~~~w~~l~~~al~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~ll~~~~g~~~~l~~l~~~~~~~~~~~~~af~--- 1094 (1331)
..-|..||.....+|+++.|+.+|+++-... +.-+. -...|..+|...|+.+......+.+...+-.....+.
T Consensus 284 ~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~---a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a 359 (656)
T PRK15174 284 VRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPY---VRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAA 359 (656)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH---HHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHH
Confidence 3678899999999999999999999885332 21111 1234677888899998888877776654433111111
Q ss_pred -hh-hcCchHHHHHHhhh
Q 000722 1095 -AA-ILGDNALMEKAWQD 1110 (1331)
Q Consensus 1095 -~~-~lgd~~~~~~~l~~ 1110 (1331)
++ .+|+.+++++.|.+
T Consensus 360 ~al~~~G~~deA~~~l~~ 377 (656)
T PRK15174 360 AALLQAGKTSEAESVFEH 377 (656)
T ss_pred HHHHHCCCHHHHHHHHHH
Confidence 22 78999999988875
No 459
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=63.10 E-value=5.4 Score=34.71 Aligned_cols=52 Identities=13% Similarity=0.061 Sum_probs=39.3
Q ss_pred eccccchHHHHHHhhhhcccccccCCCCCCCChhhhcccccchhhHHHHHHHHHHHHHHHHhhhhccccccchHHHHHHH
Q 000722 962 LAMQSNDLKRALQCLITMSNSRDIGQDHPGLDLNDILTLTTKKENIVEAVQGIVKFAKEFLDLIDAADATGQANIAREAL 1041 (1331)
Q Consensus 962 la~~~g~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~~~al~~g~~~~a~~~~ 1041 (1331)
+.++.|+++.|.++.+.+-... + +...-|..||.....+|+++.|++.|
T Consensus 6 ~~~~~g~~~~A~~~~~~~l~~~----P---------------------------~~~~a~~~lg~~~~~~g~~~~A~~~~ 54 (65)
T PF13432_consen 6 ALYQQGDYDEAIAAFEQALKQD----P---------------------------DNPEAWYLLGRILYQQGRYDEALAYY 54 (65)
T ss_dssp HHHHCTHHHHHHHHHHHHHCCS----T---------------------------THHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC----C---------------------------CCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3567899999999984432221 1 11278999999999999999999999
Q ss_pred HHH
Q 000722 1042 KRL 1044 (1331)
Q Consensus 1042 ~~~ 1044 (1331)
+++
T Consensus 55 ~~a 57 (65)
T PF13432_consen 55 ERA 57 (65)
T ss_dssp HHH
T ss_pred HHH
Confidence 988
No 460
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=62.66 E-value=28 Score=42.56 Aligned_cols=188 Identities=13% Similarity=0.089 Sum_probs=102.5
Q ss_pred eecccCCchhhhHHHhhh----cccc---chhHHHHHhhcccccccccCC----Ccccc------eeeeeccccchHHHH
Q 000722 910 CLAAYGDSVSAVKWASRL----GREH---HDDLAQFMLGMGYATEALHLP----GISKR------LEFDLAMQSNDLKRA 972 (1331)
Q Consensus 910 ~~~~~~~~~~a~~~~~~i----~~~~---~~~~a~fl~~~g~~e~Al~~~----~ds~~------~~f~la~~~g~l~~a 972 (1331)
.+..+||++.|.+++... |... .-..++.+...|-++.|++.. ...|+ .-..+.++.|+.+.|
T Consensus 127 aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a 206 (409)
T TIGR00540 127 AAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQAL 206 (409)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHH
Confidence 344568888887777662 2221 111266666677776666431 11122 345677888888888
Q ss_pred HHhhhhcccccccCCCCCCCChhhhccccc-chhhHHHHHHHHHHHHH--------------HHHhhhhccccccchHHH
Q 000722 973 LQCLITMSNSRDIGQDHPGLDLNDILTLTT-KKENIVEAVQGIVKFAK--------------EFLDLIDAADATGQANIA 1037 (1331)
Q Consensus 973 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--------------~w~~l~~~al~~g~~~~a 1037 (1331)
.+++..+.+....+.. +..++....- ..-+......|.....+ -+..++......|+++.|
T Consensus 207 ~~~l~~l~k~~~~~~~----~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A 282 (409)
T TIGR00540 207 DDIIDNMAKAGLFDDE----EFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSA 282 (409)
T ss_pred HHHHHHHHHcCCCCHH----HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHH
Confidence 8887555433211111 1111111000 00011111223333333 444556778999999999
Q ss_pred HHHHHHHHhccccccccccccccc----chhh--hcccccchhhhhhhHHHHhhccChhh--hhh------hhhcCchHH
Q 000722 1038 REALKRLAAAGSVKGALQGHELRG----LALR--LANHGELTRLSGLVTNLISLGLGREA--AFS------AAILGDNAL 1103 (1331)
Q Consensus 1038 ~~~~~~~~~~~~~~~~~~~~~~~~----l~ll--~~~~g~~~~l~~l~~~~~~~~~~~~~--af~------~~~lgd~~~ 1103 (1331)
++.+.++-.- .+ |-.. +++. ++..+|.+.+.++++.+.+..-. +. .+. ++-.|+.++
T Consensus 283 ~~~l~~~l~~-~p-------d~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~-~~~~~ll~sLg~l~~~~~~~~~ 353 (409)
T TIGR00540 283 QEIIFDGLKK-LG-------DDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDD-KPKCCINRALGQLLMKHGEFIE 353 (409)
T ss_pred HHHHHHHHhh-CC-------CcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHHHcccHHH
Confidence 9999987321 01 2121 2222 23357888899998888877544 44 332 227899999
Q ss_pred HHHHhhh
Q 000722 1104 MEKAWQD 1110 (1331)
Q Consensus 1104 ~~~~l~~ 1110 (1331)
+.+.|.+
T Consensus 354 A~~~le~ 360 (409)
T TIGR00540 354 AADAFKN 360 (409)
T ss_pred HHHHHHH
Confidence 9998883
No 461
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=62.27 E-value=6 Score=30.57 Aligned_cols=24 Identities=17% Similarity=0.057 Sum_probs=21.5
Q ss_pred HHhhhhccccccchHHHHHHHHHH
Q 000722 1021 FLDLIDAADATGQANIAREALKRL 1044 (1331)
Q Consensus 1021 w~~l~~~al~~g~~~~a~~~~~~~ 1044 (1331)
|..||+.....|+++.|+++|+++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 678999999999999999999996
No 462
>PF07462 MSP1_C: Merozoite surface protein 1 (MSP1) C-terminus; InterPro: IPR010901 This entry represents the C-terminal region of merozoite surface protein 1 (MSP1), which is found in a number of Plasmodium species. MSP-1 is a 200 kDa protein expressed on the surface of the Plasmodium vivax merozoite. MSP-1 of Plasmodium species is synthesised as a high-molecular-weight precursor and then processed into several fragments. At the time of red cell invasion by the merozoite, only the 19 kDa C-terminal fragment (MSP-119), which contains two epidermal growth factor-like domains, remains on the surface. Antibodies against MSP-119 inhibit merozoite entry into red cells, and immunisation with MSP-119 protects monkeys from challenging infections. Hence, MSP-119 is considered a promising vaccine candidate [].; GO: 0009405 pathogenesis, 0016020 membrane
Probab=61.83 E-value=13 Score=45.62 Aligned_cols=9 Identities=11% Similarity=0.183 Sum_probs=5.2
Q ss_pred HHHHhhhhc
Q 000722 1019 KEFLDLIDA 1027 (1331)
Q Consensus 1019 ~~w~~l~~~ 1027 (1331)
.+|+.||.+
T Consensus 54 ~~~~~L~~e 62 (574)
T PF07462_consen 54 EKWNALGEE 62 (574)
T ss_pred HHHHHHHHH
Confidence 566666643
No 463
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=61.33 E-value=2.6e+02 Score=36.47 Aligned_cols=24 Identities=17% Similarity=0.195 Sum_probs=18.9
Q ss_pred hhhccCCCCccchhHHHHHhcccC
Q 000722 1141 QKEVDHTPTAKTDAAAAFLASLEE 1164 (1331)
Q Consensus 1141 ~~~~~~~~~~~~~~~~~~~~~~~~ 1164 (1331)
.+++...|..++-.=|.+|.+|.-
T Consensus 340 ~~el~~a~~~~~~~Em~llrll~~ 363 (700)
T PRK12323 340 RSELALAPDEYAGFTMTLLRMLAF 363 (700)
T ss_pred HHHhccCCCHHHHHHHHHHHHhhC
Confidence 456667888888888999988873
No 464
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=60.73 E-value=32 Score=45.79 Aligned_cols=103 Identities=12% Similarity=0.029 Sum_probs=64.4
Q ss_pred eecccCCchhhhHHHhhhcc----cc--chhHHHHHhhcccccccccCCCc-------ccceeeeec---cccchHHHHH
Q 000722 910 CLAAYGDSVSAVKWASRLGR----EH--HDDLAQFMLGMGYATEALHLPGI-------SKRLEFDLA---MQSNDLKRAL 973 (1331)
Q Consensus 910 ~~~~~~~~~~a~~~~~~i~~----~~--~~~~a~fl~~~g~~e~Al~~~~d-------s~~~~f~la---~~~g~l~~a~ 973 (1331)
.+.-.|+.++|+++.....+ .. +..+|..+..+|-.++|+.+... ++...+.|+ ++.|++++|+
T Consensus 24 ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~ 103 (765)
T PRK10049 24 IALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEAL 103 (765)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 45667999999887766322 11 56777788888877777644322 134444443 3567777777
Q ss_pred HhhhhcccccccCCCCCCCChhhhcccccchhhHHHHHHHHHHHHHHHHhhhhccccccchHHHHHHHHHH
Q 000722 974 QCLITMSNSRDIGQDHPGLDLNDILTLTTKKENIVEAVQGIVKFAKEFLDLIDAADATGQANIAREALKRL 1044 (1331)
Q Consensus 974 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~~~al~~g~~~~a~~~~~~~ 1044 (1331)
+.+..+... ..+.. . |..||.....+|+.+.|+.+|+++
T Consensus 104 ~~l~~~l~~-~P~~~------------------------------~-~~~la~~l~~~g~~~~Al~~l~~a 142 (765)
T PRK10049 104 VKAKQLVSG-APDKA------------------------------N-LLALAYVYKRAGRHWDELRAMTQA 142 (765)
T ss_pred HHHHHHHHh-CCCCH------------------------------H-HHHHHHHHHHCCCHHHHHHHHHHH
Confidence 776332211 11111 5 777888888888888888888877
No 465
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=60.73 E-value=21 Score=43.41 Aligned_cols=224 Identities=13% Similarity=0.091 Sum_probs=0.0
Q ss_pred cccccceeeehh-hcccCCCcceEeecCCCceeeeeehh----hheeehhhcC---------CCccchhhhhHhhhcccc
Q 000722 162 LDNKSLVCMEFL-SRSAVGDVPLVAFGSSDGVIRVLSMI----SWKLVRRYTG---------GHKGSISCLMTFMASSGE 227 (1331)
Q Consensus 162 ~h~~~V~~Vaf~-P~s~Spdg~~LasGs~DGtIrlWDl~----t~~~v~~~~~---------gH~~~V~~vawf~~spdg 227 (1331)
.|.++-.|...+ +........+++-|-..+.|.|+|.. ..+..+.+.. ...+.+.|+. +|
T Consensus 68 HH~GWNaCSsc~~~~~~~~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp------~G 141 (461)
T PF05694_consen 68 HHSGWNACSSCHYGDPSKERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLP------DG 141 (461)
T ss_dssp ---EES--GGSTT--TT--S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-S------S-
T ss_pred ccccCcccccccCCCCcccCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecC------Cc
Q ss_pred EEEeecCCC------ceEEEEeccCCCccccccccceeeeccCcEEEEEechhccCCCcEEEeecCc-------------
Q 000722 228 ALLVSGGSD------GLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADK------------- 288 (1331)
Q Consensus 228 ~lLaSgs~D------gtIrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg------------- 288 (1331)
++++|+-.| |-+.+.|-++.+....|.. -.+...--..+-|+| ..+.++|...-.
T Consensus 142 ~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~---~~~~~~~gYDfw~qp---r~nvMiSSeWg~P~~~~~Gf~~~d~ 215 (461)
T PF05694_consen 142 RIMISALGDADGNGPGGFVLLDGETFEVKGRWEK---DRGPQPFGYDFWYQP---RHNVMISSEWGAPSMFEKGFNPEDL 215 (461)
T ss_dssp -EEEEEEEETTS-S--EEEEE-TTT--EEEE--S---B-TT------EEEET---TTTEEEE-B---HHHHTT---TTTH
T ss_pred cEEEEeccCCCCCCCCcEEEEcCccccccceecc---CCCCCCCCCCeEEcC---CCCEEEEeccCChhhcccCCChhHh
Q ss_pred -------eeEeeeccchhhhcccCCCCcccccccccccCCCCCCCc----eeeeeecceeeeeec-Cccccccccccccc
Q 000722 289 -------TLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLD----ILTCVKDSHIWAIEH-PTYSALTRPLCELS 356 (1331)
Q Consensus 289 -------~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg~----lLa~s~Dg~IWdl~~-~~~~~l~~~~~~~~ 356 (1331)
++.+||+.+.+.++++. +-.......-+.|..+-. ++.+.-..+||.+.. ....-..+...++.
T Consensus 216 ~~~~yG~~l~vWD~~~r~~~Q~id----Lg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip 291 (461)
T PF05694_consen 216 EAGKYGHSLHVWDWSTRKLLQTID----LGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIP 291 (461)
T ss_dssp HHH-S--EEEEEETTTTEEEEEEE----S-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE-
T ss_pred hcccccCeEEEEECCCCcEeeEEe----cCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECC
Q ss_pred cCCCcccccccc-------ceEEEEEEeccCCccEeeecceeEEEEeecCCCC
Q 000722 357 SLVPPQVLAHHK-------KLRVYCMVAHSLQPHLVATGTNVGVIISEFDPRS 402 (1331)
Q Consensus 357 ~~~~~~~l~~h~-------~~~I~~la~sp~~~~lLAtGs~DG~Il~VWDlr~ 402 (1331)
......-.-..- ..-|+.|..|.++.++.++.-.+|-| |.||+..
T Consensus 292 ~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~Gdv-rqYDISD 343 (461)
T PF05694_consen 292 AKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDV-RQYDISD 343 (461)
T ss_dssp -EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEE-EEEE-SS
T ss_pred CcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcE-EEEecCC
No 466
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=60.31 E-value=1.8 Score=44.28 Aligned_cols=87 Identities=10% Similarity=0.110 Sum_probs=59.8
Q ss_pred cccCCchhhhHHHhhhccccchhHHHHHhhcccccccccCCCcc--cceeeeeccccchHHHHHHhhhhcccccccCCCC
Q 000722 912 AAYGDSVSAVKWASRLGREHHDDLAQFMLGMGYATEALHLPGIS--KRLEFDLAMQSNDLKRALQCLITMSNSRDIGQDH 989 (1331)
Q Consensus 912 ~~~~~~~~a~~~~~~i~~~~~~~~a~fl~~~g~~e~Al~~~~ds--~~~~f~la~~~g~l~~a~~~~~~~~~~~~~~~~~ 989 (1331)
+..++.+..++.+.....-..+.+++.+++.|+.++|.-+.... -..=+++..++++++.|.+.+ ++.+.+
T Consensus 53 ~~~~~~~~l~~~L~~~~~yd~~~~~~~c~~~~l~~~a~~Ly~~~~~~~~al~i~~~~~~~~~a~e~~------~~~~~~- 125 (143)
T PF00637_consen 53 IKYDPYEKLLEFLKTSNNYDLDKALRLCEKHGLYEEAVYLYSKLGNHDEALEILHKLKDYEEAIEYA------KKVDDP- 125 (143)
T ss_dssp HCTTTCCHHHHTTTSSSSS-CTHHHHHHHTTTSHHHHHHHHHCCTTHTTCSSTSSSTHCSCCCTTTG------GGCSSS-
T ss_pred HhcCCchHHHHHcccccccCHHHHHHHHHhcchHHHHHHHHHHcccHHHHHHHHHHHccHHHHHHHH------HhcCcH-
Confidence 33355677777777644444567888888888888777665321 222234455678888888888 666666
Q ss_pred CCCChhhhcccccchhhHHHHHHHHHHHHHHHHhhhhccccccch
Q 000722 990 PGLDLNDILTLTTKKENIVEAVQGIVKFAKEFLDLIDAADATGQA 1034 (1331)
Q Consensus 990 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~~~al~~g~~ 1034 (1331)
+-|..|++..+.++..
T Consensus 126 -----------------------------~l~~~l~~~~l~~~~~ 141 (143)
T PF00637_consen 126 -----------------------------ELWEQLLKYCLDSKPF 141 (143)
T ss_dssp -----------------------------HHHHHHHHHHCTSTCT
T ss_pred -----------------------------HHHHHHHHHHHhcCcc
Confidence 8999999999887764
No 467
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=60.21 E-value=9.2 Score=44.34 Aligned_cols=123 Identities=23% Similarity=0.150 Sum_probs=78.6
Q ss_pred CCchhhhHHHhh----hccccchhHHHHHhhcccccccccCCCcccceeeeeccccchHHHHHHhhhhcccccccCCCCC
Q 000722 915 GDSVSAVKWASR----LGREHHDDLAQFMLGMGYATEALHLPGISKRLEFDLAMQSNDLKRALQCLITMSNSRDIGQDHP 990 (1331)
Q Consensus 915 ~~~~~a~~~~~~----i~~~~~~~~a~fl~~~g~~e~Al~~~~ds~~~~f~la~~~g~l~~a~~~~~~~~~~~~~~~~~~ 990 (1331)
+||++|++.+.+ =|+.+.-.||+|.- |.|.+....++ +|= ..+.++.|++.- ++-
T Consensus 155 reW~KAId~A~~L~k~~~q~~~~eIAqfyC-----ELAq~~~~~~~---~d~--A~~~l~kAlqa~------~~c----- 213 (389)
T COG2956 155 REWEKAIDVAERLVKLGGQTYRVEIAQFYC-----ELAQQALASSD---VDR--ARELLKKALQAD------KKC----- 213 (389)
T ss_pred hHHHHHHHHHHHHHHcCCccchhHHHHHHH-----HHHHHHhhhhh---HHH--HHHHHHHHHhhC------ccc-----
Confidence 889999988876 35666677888744 45555433321 111 223344444432 100
Q ss_pred CCChhhhcccccchhhHHHHHHHHHHHHHHHHhhhhccccccchHHHHHHHHHHHhcccccccccccccccchhhhcccc
Q 000722 991 GLDLNDILTLTTKKENIVEAVQGIVKFAKEFLDLIDAADATGQANIAREALKRLAAAGSVKGALQGHELRGLALRLANHG 1070 (1331)
Q Consensus 991 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~~~al~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~ll~~~~g 1070 (1331)
.+-=..||+.++.+|+++-|.++|.+. ..-+-++++.-+..|.-.|...|
T Consensus 214 ---------------------------vRAsi~lG~v~~~~g~y~~AV~~~e~v---~eQn~~yl~evl~~L~~~Y~~lg 263 (389)
T COG2956 214 ---------------------------VRASIILGRVELAKGDYQKAVEALERV---LEQNPEYLSEVLEMLYECYAQLG 263 (389)
T ss_pred ---------------------------eehhhhhhHHHHhccchHHHHHHHHHH---HHhChHHHHHHHHHHHHHHHHhC
Confidence 033456899999999999999999999 43345566666677777888888
Q ss_pred cchhhhhhhHHHHhhccC
Q 000722 1071 ELTRLSGLVTNLISLGLG 1088 (1331)
Q Consensus 1071 ~~~~l~~l~~~~~~~~~~ 1088 (1331)
+.+....-+..+.+...+
T Consensus 264 ~~~~~~~fL~~~~~~~~g 281 (389)
T COG2956 264 KPAEGLNFLRRAMETNTG 281 (389)
T ss_pred CHHHHHHHHHHHHHccCC
Confidence 877777666666655544
No 468
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=60.09 E-value=8 Score=33.98 Aligned_cols=27 Identities=15% Similarity=0.107 Sum_probs=25.6
Q ss_pred HHHHhhhhccccccchHHHHHHHHHHH
Q 000722 1019 KEFLDLIDAADATGQANIAREALKRLA 1045 (1331)
Q Consensus 1019 ~~w~~l~~~al~~g~~~~a~~~~~~~~ 1045 (1331)
..|..+|..+...|+++.|+++|+++-
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai 30 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAI 30 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 789999999999999999999999993
No 469
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=60.04 E-value=9 Score=49.37 Aligned_cols=115 Identities=15% Similarity=0.102 Sum_probs=73.1
Q ss_pred cCCceeEEeeecchhhHHHHhhhcc--------------ccccCCcccccccccccCCCCC--CCCceEEEEEeeccee-
Q 000722 83 RGGSVKQVNFYDDDVRFWQLWRNRA--------------AAAEAPTAVSNVTSGFASPPPS--TKGRHFLVICCVNKAI- 145 (1331)
Q Consensus 83 ~gg~V~sVaf~DgtIrvWdl~tg~~--------------l~~~~~~~~~~~~~~V~svafs--pdg~~lLasgs~d~iI- 145 (1331)
.+..|..++.+||.|.+|.+.+--. .....+.........+|+++++ ...+ ++|+++....|
T Consensus 112 g~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~r-lIAVSsNs~~VT 190 (717)
T PF08728_consen 112 GGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSR-LIAVSSNSQEVT 190 (717)
T ss_pred CCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcce-EEEEecCCceEE
Confidence 3578888899999999996533110 0011123334445678888887 5554 88888777766
Q ss_pred Ee--eeecccCCCCCccccccccceeeehhhcccCCCcc-eEeecCCCceeeeeehh
Q 000722 146 FL--DLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVP-LVAFGSSDGVIRVLSMI 199 (1331)
Q Consensus 146 vw--Dl~t~~~~~i~~~~~h~~~V~~Vaf~P~s~Spdg~-~LasGs~DGtIrlWDl~ 199 (1331)
+| .....+..... ...+...|.||.|.+....++|. ++++++-.|.+.+|++.
T Consensus 191 VFaf~l~~~r~~~~~-s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~ 246 (717)
T PF08728_consen 191 VFAFALVDERFYHVP-SHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK 246 (717)
T ss_pred EEEEecccccccccc-ccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence 55 33222211111 22367789999998864444554 78888899999998874
No 470
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=60.00 E-value=11 Score=45.90 Aligned_cols=146 Identities=16% Similarity=0.196 Sum_probs=88.4
Q ss_pred CCCCCCCceEEEEEeecceeEeeeecccCCCCCccccccccceeeehhhcccCCCcceE-eecCCCceeeeeehhhheee
Q 000722 126 PPPSTKGRHFLVICCVNKAIFLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLV-AFGSSDGVIRVLSMISWKLV 204 (1331)
Q Consensus 126 vafspdg~~lLasgs~d~iIvwDl~t~~~~~i~~~~~h~~~V~~Vaf~P~s~Spdg~~L-asGs~DGtIrlWDl~t~~~v 204 (1331)
..|-+.+..++++|...-+.++|-...... -.........++| ..+++.+ +.+-..+.+.+||+.+...
T Consensus 40 ~~w~~e~~nlavaca~tiv~~YD~agq~~l----e~n~tg~aldm~w-----DkegdvlavlAek~~piylwd~n~eyt- 109 (615)
T KOG2247|consen 40 HRWRPEGHNLAVACANTIVIYYDKAGQVIL----ELNPTGKALDMAW-----DKEGDVLAVLAEKTGPIYLWDVNSEYT- 109 (615)
T ss_pred eeEecCCCceehhhhhhHHHhhhhhcceec----ccCCchhHhhhhh-----ccccchhhhhhhcCCCeeechhhhhhH-
Confidence 346677765655555444446764432111 1111334445667 4555544 4456778999999976432
Q ss_pred hhhcCCCccchhhhhHhhhccccEEEeecCCCceEEEEeccCCCccccccccceeeeccCcEEEEEechhccCCCcEEEe
Q 000722 205 RRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITI 284 (1331)
Q Consensus 205 ~~~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSg 284 (1331)
..+..+-++. .++. ..++....++.+-..|.+++++..+.+.+-. ...|...+++++|.+ ..+.+.+
T Consensus 110 qqLE~gg~~s-~sll--~wsKg~~el~ig~~~gn~viynhgtsR~iiv------~Gkh~RRgtq~av~l----Ed~vil~ 176 (615)
T KOG2247|consen 110 QQLESGGTSS-KSLL--AWSKGTPELVIGNNAGNIVIYNHGTSRRIIV------MGKHQRRGTQIAVTL----EDYVILC 176 (615)
T ss_pred HHHhccCcch-HHHH--hhccCCccccccccccceEEEeccchhhhhh------hcccccceeEEEecc----cceeeec
Confidence 2222122222 2222 2588888899999999999999877653321 233889999999998 4577778
Q ss_pred ecCceeEeee
Q 000722 285 GADKTLAIWD 294 (1331)
Q Consensus 285 s~Dg~IrIWD 294 (1331)
+.|..+.+-.
T Consensus 177 dcd~~L~v~~ 186 (615)
T KOG2247|consen 177 DCDNTLSVTT 186 (615)
T ss_pred CcHHHHHHhh
Confidence 7777665543
No 471
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=59.79 E-value=9.2 Score=48.05 Aligned_cols=90 Identities=13% Similarity=0.123 Sum_probs=57.7
Q ss_pred HHHHhhhhccccccchHHHHHHHHHHHhcccccc----cccccc---------------------------cccchhhhc
Q 000722 1019 KEFLDLIDAADATGQANIAREALKRLAAAGSVKG----ALQGHE---------------------------LRGLALRLA 1067 (1331)
Q Consensus 1019 ~~w~~l~~~al~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~---------------------------~~~l~ll~~ 1067 (1331)
+-|.-+|.-.=-|++++.|.+||+|+=..+ +.= -|++|+ +-||-++|.
T Consensus 422 esWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~ 500 (638)
T KOG1126|consen 422 ESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYL 500 (638)
T ss_pred HHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhhee
Confidence 567777766666777777777777762111 000 133333 347788888
Q ss_pred ccccchhhhhhhHHHHhhccChhhhhhhh------hcCchHHHHHHhhh
Q 000722 1068 NHGELTRLSGLVTNLISLGLGREAAFSAA------ILGDNALMEKAWQD 1110 (1331)
Q Consensus 1068 ~~g~~~~l~~l~~~~~~~~~~~~~af~~~------~lgd~~~~~~~l~~ 1110 (1331)
..+..+-..--.+.|.+-+=. |....|. .+|+.+++++++.+
T Consensus 501 Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~ 548 (638)
T KOG1126|consen 501 KQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEK 548 (638)
T ss_pred ccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHH
Confidence 888888777666777776655 6555543 78888888877664
No 472
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=59.69 E-value=6.8 Score=40.52 Aligned_cols=26 Identities=19% Similarity=0.239 Sum_probs=24.1
Q ss_pred HHHHhhhhccccccchHHHHHHHHHH
Q 000722 1019 KEFLDLIDAADATGQANIAREALKRL 1044 (1331)
Q Consensus 1019 ~~w~~l~~~al~~g~~~~a~~~~~~~ 1044 (1331)
..|..+|......|+++.|.++|+++
T Consensus 93 ~a~~~lg~~l~~~g~~~eAi~~~~~A 118 (144)
T PRK15359 93 EPVYQTGVCLKMMGEPGLAREAFQTA 118 (144)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 78889999999999999999999988
No 473
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=59.14 E-value=25 Score=36.29 Aligned_cols=27 Identities=7% Similarity=-0.066 Sum_probs=25.3
Q ss_pred HHHHhhhhccccccchHHHHHHHHHHH
Q 000722 1019 KEFLDLIDAADATGQANIAREALKRLA 1045 (1331)
Q Consensus 1019 ~~w~~l~~~al~~g~~~~a~~~~~~~~ 1045 (1331)
.-|..+|......|+++.|..+|+++-
T Consensus 59 ~a~~~lg~~~~~~g~~~~A~~~y~~Al 85 (144)
T PRK15359 59 RAHIALAGTWMMLKEYTTAINFYGHAL 85 (144)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 789999999999999999999999993
No 474
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=59.01 E-value=22 Score=43.17 Aligned_cols=30 Identities=17% Similarity=0.193 Sum_probs=27.8
Q ss_pred HHHHhhhhccccccchHHHHHHHHHHHhcc
Q 000722 1019 KEFLDLIDAADATGQANIAREALKRLAAAG 1048 (1331)
Q Consensus 1019 ~~w~~l~~~al~~g~~~~a~~~~~~~~~~~ 1048 (1331)
+.|..||+-..+.++.+.|++||+++=.++
T Consensus 433 Rlw~aLG~CY~kl~~~~eAiKCykrai~~~ 462 (559)
T KOG1155|consen 433 RLWVALGECYEKLNRLEEAIKCYKRAILLG 462 (559)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcc
Confidence 899999999999999999999999996555
No 475
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=58.48 E-value=1.9e+02 Score=33.68 Aligned_cols=161 Identities=11% Similarity=0.080 Sum_probs=93.3
Q ss_pred cccceeeehhhcccCCCcceEeecCCCceeeeeehhhheeehhhcCCCccchhhhhHhhhccccEEEeecCCCceEEEEe
Q 000722 164 NKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWS 243 (1331)
Q Consensus 164 ~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrVWD 243 (1331)
...+.++.| +|+.+.|++..+...-.||=...|+.++++.-..-+.-..+. +-.++.+.++--.++.+.++.
T Consensus 85 ~~nvS~LTy-----np~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ie---yig~n~fvi~dER~~~l~~~~ 156 (316)
T COG3204 85 TANVSSLTY-----NPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIE---YIGGNQFVIVDERDRALYLFT 156 (316)
T ss_pred cccccceee-----CCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeE---EecCCEEEEEehhcceEEEEE
Confidence 445999999 678887777777766666666678888876422223333444 345667777777888888887
Q ss_pred ccCCCccccccc-cceee--ec-cCcEEEEEechhccCCCcEEEeecCceeEeeeccchhhhcccC----CCCccccccc
Q 000722 244 ADHGQDSRELVP-KLSLK--AH-DGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIK----PVPKLACHSV 315 (1331)
Q Consensus 244 l~tg~~~~~~~~-~~~l~--gH-~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~----~~~~l~~H~~ 315 (1331)
+.....+..... ..++. .+ +.+.-.++|.| ..+.|..+-+-.-++||.+..+...-... +.....---.
T Consensus 157 vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~---~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~ 233 (316)
T COG3204 157 VDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDP---VDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVL 233 (316)
T ss_pred EcCCccEEeccceEEeccccCCCCcCceeeecCC---CCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEee
Confidence 766533211111 22221 22 56788999999 56677777777777777765322110000 0000011123
Q ss_pred ccccCCCCCC-Cceeeeeecc
Q 000722 316 ASWCHPRAPN-LDILTCVKDS 335 (1331)
Q Consensus 316 ~V~svafspd-g~lLa~s~Dg 335 (1331)
.|+++.|++. +.+++-|.+.
T Consensus 234 DvSgl~~~~~~~~LLVLS~ES 254 (316)
T COG3204 234 DVSGLEFNAITNSLLVLSDES 254 (316)
T ss_pred ccccceecCCCCcEEEEecCC
Confidence 5667778765 3455555444
No 476
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=57.72 E-value=8 Score=48.07 Aligned_cols=163 Identities=19% Similarity=0.134 Sum_probs=0.0
Q ss_pred cCCchhhhHHHhh---hcccc---chhHHHHHhhcccccccccCCCcccceeeeeccccchHHHHHHhhhhcccccccCC
Q 000722 914 YGDSVSAVKWASR---LGREH---HDDLAQFMLGMGYATEALHLPGISKRLEFDLAMQSNDLKRALQCLITMSNSRDIGQ 987 (1331)
Q Consensus 914 ~~~~~~a~~~~~~---i~~~~---~~~~a~fl~~~g~~e~Al~~~~ds~~~~f~la~~~g~l~~a~~~~~~~~~~~~~~~ 987 (1331)
+|++|.|+..-++ +.+.+ ++.+|-=|..+|-..||...+...-+.--.-|=.++||..+..--..+.....+=.
T Consensus 299 qG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~ 378 (966)
T KOG4626|consen 299 QGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYL 378 (966)
T ss_pred cccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHH
Q ss_pred CCCCCChhhhcccccchhhHHHHHHHHHHHHHHHHhhhhccccccchHHHHHHHHHHHhcccccccccccccccchhhhc
Q 000722 988 DHPGLDLNDILTLTTKKENIVEAVQGIVKFAKEFLDLIDAADATGQANIAREALKRLAAAGSVKGALQGHELRGLALRLA 1067 (1331)
Q Consensus 988 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~~~al~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~ll~~ 1067 (1331)
. +..=...|+.-+..||-....||+++.|.+||+.+ |-.
T Consensus 379 ~---------------------al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykea--------------------lrI 417 (966)
T KOG4626|consen 379 K---------------------ALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEA--------------------LRI 417 (966)
T ss_pred H---------------------HHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHH--------------------Hhc
Q ss_pred ccccchhhhhhhHHHHhhccChhhhhhhh---------hcCchHHHHHHhhhhhhHHHHH
Q 000722 1068 NHGELTRLSGLVTNLISLGLGREAAFSAA---------ILGDNALMEKAWQDTGMLAEAV 1118 (1331)
Q Consensus 1068 ~~g~~~~l~~l~~~~~~~~~~~~~af~~~---------~lgd~~~~~~~l~~~~~~~~A~ 1118 (1331)
.-.=.+.+..|.+.-++.|+. ..|..++ +..-....-.+..++|.++||+
T Consensus 418 ~P~fAda~~NmGnt~ke~g~v-~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI 476 (966)
T KOG4626|consen 418 KPTFADALSNMGNTYKEMGDV-SAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAI 476 (966)
T ss_pred CchHHHHHHhcchHHHHhhhH-HHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHH
No 477
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=57.67 E-value=1e+02 Score=38.30 Aligned_cols=51 Identities=18% Similarity=0.300 Sum_probs=31.9
Q ss_pred hccccEEEeecCCCceEEEEeccCCCcc--ccccccceeeeccCcEEEEEechh
Q 000722 223 ASSGEALLVSGGSDGLLILWSADHGQDS--RELVPKLSLKAHDGGVVAVELSRV 274 (1331)
Q Consensus 223 ~spdg~lLaSgs~DgtIrVWDl~tg~~~--~~~~~~~~l~gH~~~V~svafsp~ 274 (1331)
+.|++++|++--..|.|++++..++... ..+ +......-.++...|++||.
T Consensus 37 flPDG~llVtER~~G~I~~v~~~~~~~~~~~~l-~~v~~~~ge~GLlglal~Pd 89 (454)
T TIGR03606 37 WGPDNQLWVTERATGKILRVNPETGEVKVVFTL-PEIVNDAQHNGLLGLALHPD 89 (454)
T ss_pred EcCCCeEEEEEecCCEEEEEeCCCCceeeeecC-CceeccCCCCceeeEEECCC
Confidence 6789988887655799999976554321 111 11111113677999999994
No 478
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=55.40 E-value=1.4e+02 Score=38.69 Aligned_cols=23 Identities=4% Similarity=-0.191 Sum_probs=12.7
Q ss_pred HhhhccCCCcHHHHHHHHHHHHh
Q 000722 1119 LHAHAHGRPSLKNLVEAWNKMLQ 1141 (1331)
Q Consensus 1119 ~~A~~~~~~~~~~~~~~w~~~l~ 1141 (1331)
..|+.+..+.+..+++.+.+...
T Consensus 318 ~~A~~~s~~~L~~~l~~il~~~~ 340 (624)
T PRK14959 318 GWAKRFEPAHIHACWQMTLEGQR 340 (624)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHH
Confidence 35556665556555555555433
No 479
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=55.34 E-value=22 Score=39.71 Aligned_cols=69 Identities=16% Similarity=0.293 Sum_probs=47.1
Q ss_pred ccccEEEeecCCCceEEEEeccCCCcccccccccee-e-------eccCcEEEEEechhccCCCcEEEeecCceeEeeec
Q 000722 224 SSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSL-K-------AHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDT 295 (1331)
Q Consensus 224 spdg~lLaSgs~DgtIrVWDl~tg~~~~~~~~~~~l-~-------gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl 295 (1331)
..++++|+.-..+|.+++||+.+++.+........+ . .....|..+.++. +|.-|++-+ +|....|+.
T Consensus 19 ~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~---~G~PiV~ls-ng~~y~y~~ 94 (219)
T PF07569_consen 19 ECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTS---NGVPIVTLS-NGDSYSYSP 94 (219)
T ss_pred EeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcC---CCCEEEEEe-CCCEEEecc
Confidence 446778888899999999999998765432222222 1 3456688888886 666566554 577888885
Q ss_pred c
Q 000722 296 V 296 (1331)
Q Consensus 296 ~ 296 (1331)
.
T Consensus 95 ~ 95 (219)
T PF07569_consen 95 D 95 (219)
T ss_pred c
Confidence 5
No 480
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=54.82 E-value=40 Score=44.28 Aligned_cols=37 Identities=16% Similarity=0.218 Sum_probs=30.3
Q ss_pred ccCcEEEEEechhccCCCcEEEeecCceeEeeeccch
Q 000722 262 HDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSF 298 (1331)
Q Consensus 262 H~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~ 298 (1331)
+...|..+.|||...++..|+.-..|+++|+||+...
T Consensus 145 ~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 145 SSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred CCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCC
Confidence 4456889999996445789999999999999999643
No 481
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=54.72 E-value=11 Score=28.08 Aligned_cols=27 Identities=15% Similarity=0.191 Sum_probs=24.9
Q ss_pred HHHHhhhhccccccchHHHHHHHHHHH
Q 000722 1019 KEFLDLIDAADATGQANIAREALKRLA 1045 (1331)
Q Consensus 1019 ~~w~~l~~~al~~g~~~~a~~~~~~~~ 1045 (1331)
+-|..+|+.....|+++.|.++|+++-
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~ 28 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKAL 28 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 578899999999999999999999983
No 482
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=54.46 E-value=37 Score=39.82 Aligned_cols=152 Identities=15% Similarity=0.100 Sum_probs=74.5
Q ss_pred cccceeeehhhcccCCCcceEeecCCCceeeeeehhh--heeehhhcCCCccchhhhhHhhhccccEEEeecCCCceEEE
Q 000722 164 NKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMIS--WKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLIL 241 (1331)
Q Consensus 164 ~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t--~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrV 241 (1331)
...+..+.. +++|.++++++......-||... ++...+ .-...|..+. |.+++.+.+.+ ..|.|++
T Consensus 144 ~gs~~~~~r-----~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r---~~~~riq~~g---f~~~~~lw~~~-~Gg~~~~ 211 (302)
T PF14870_consen 144 SGSINDITR-----SSDGRYVAVSSRGNFYSSWDPGQTTWQPHNR---NSSRRIQSMG---FSPDGNLWMLA-RGGQIQF 211 (302)
T ss_dssp ---EEEEEE------TTS-EEEEETTSSEEEEE-TT-SS-EEEE-----SSS-EEEEE---E-TTS-EEEEE-TTTEEEE
T ss_pred cceeEeEEE-----CCCCcEEEEECcccEEEEecCCCccceEEcc---Cccceehhce---ecCCCCEEEEe-CCcEEEE
Confidence 356777776 67999999997777777787643 333332 2346777776 78888776654 8888888
Q ss_pred Eec-cCCCccccccccceeeeccCcEEEEEechhccCCCcEEEeecCceeEeeeccchhhhcccCCCCcccccccccccC
Q 000722 242 WSA-DHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCH 320 (1331)
Q Consensus 242 WDl-~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~sv 320 (1331)
=+. .......+ +...+......+..++|.+ +....++|+. |.+ +.....|+.+++... ...-...++.+
T Consensus 212 s~~~~~~~~w~~--~~~~~~~~~~~~ld~a~~~---~~~~wa~gg~-G~l-~~S~DgGktW~~~~~---~~~~~~n~~~i 281 (302)
T PF14870_consen 212 SDDPDDGETWSE--PIIPIKTNGYGILDLAYRP---PNEIWAVGGS-GTL-LVSTDGGKTWQKDRV---GENVPSNLYRI 281 (302)
T ss_dssp EE-TTEEEEE-----B-TTSS--S-EEEEEESS---SS-EEEEEST-T-E-EEESSTTSS-EE-GG---GTTSSS---EE
T ss_pred ccCCCCcccccc--ccCCcccCceeeEEEEecC---CCCEEEEeCC-ccE-EEeCCCCccceECcc---ccCCCCceEEE
Confidence 762 22211111 1111222334588999998 6666666654 433 334455555544211 11223455666
Q ss_pred CCCCCCceeeeeeccee
Q 000722 321 PRAPNLDILTCVKDSHI 337 (1331)
Q Consensus 321 afspdg~lLa~s~Dg~I 337 (1331)
.|.++.+-++.|.+|.|
T Consensus 282 ~f~~~~~gf~lG~~G~l 298 (302)
T PF14870_consen 282 VFVNPDKGFVLGQDGVL 298 (302)
T ss_dssp EEEETTEEEEE-STTEE
T ss_pred EEcCCCceEEECCCcEE
Confidence 77666666666677653
No 483
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=53.93 E-value=23 Score=29.02 Aligned_cols=31 Identities=23% Similarity=0.091 Sum_probs=26.1
Q ss_pred cEEEEEechhccCC--CcEEEeecCceeEeeeccc
Q 000722 265 GVVAVELSRVMGGS--PQLITIGADKTLAIWDTVS 297 (1331)
Q Consensus 265 ~V~svafsp~~~dg--~~LaSgs~Dg~IrIWDl~t 297 (1331)
.|.++.|+|. .+ ++|+-.-.-|.|.|+|+++
T Consensus 2 AvR~~kFsP~--~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 2 AVRCCKFSPE--PGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CeEEEEeCCC--CCcccEEEEEccCCeEEEEEccc
Confidence 5889999983 44 6888888899999999985
No 484
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=52.98 E-value=2.2e+02 Score=36.97 Aligned_cols=71 Identities=10% Similarity=0.062 Sum_probs=35.5
Q ss_pred cccccchhhhhhhHHHHhhccChhhhhhhhhcCchHHHH--HHhhhhh------h-HHHHHHhhhccCCCcHHHHHHHHH
Q 000722 1067 ANHGELTRLSGLVTNLISLGLGREAAFSAAILGDNALME--KAWQDTG------M-LAEAVLHAHAHGRPSLKNLVEAWN 1137 (1331)
Q Consensus 1067 ~~~g~~~~l~~l~~~~~~~~~~~~~af~~~~lgd~~~~~--~~l~~~~------~-~~~A~~~A~~~~~~~~~~~~~~w~ 1137 (1331)
...++..++-++++.....|.. -..+...++.-+.... +.+...| . .......|+.|....+..+++.-.
T Consensus 269 i~~~d~~~al~~l~~Ll~~ge~-p~~iL~lL~~~fRdLL~vK~~~~~~l~~~~~~v~~~l~~qA~~fs~~~L~~~l~~l~ 347 (620)
T PRK14954 269 IAENDAVKMLEVARFVIDNGYD-EQDFLEKLIEHFRNFLVLYNLRSTRLIERPESVKERYQQSAGGLTPAAVMQMTDFLM 347 (620)
T ss_pred HHcCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHHHHHHhccccccccCCHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 4566677777777777766654 3333333333333332 3322222 1 223336777777665555554443
Q ss_pred H
Q 000722 1138 K 1138 (1331)
Q Consensus 1138 ~ 1138 (1331)
+
T Consensus 348 e 348 (620)
T PRK14954 348 K 348 (620)
T ss_pred H
Confidence 3
No 485
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=52.63 E-value=80 Score=37.54 Aligned_cols=59 Identities=12% Similarity=0.155 Sum_probs=32.9
Q ss_pred hccccEEEeecCCCceEEEEeccCCCcccccccc-ceeeeccCcEEEEEechhccCCCcEEE
Q 000722 223 ASSGEALLVSGGSDGLLILWSADHGQDSRELVPK-LSLKAHDGGVVAVELSRVMGGSPQLIT 283 (1331)
Q Consensus 223 ~spdg~lLaSgs~DgtIrVWDl~tg~~~~~~~~~-~~l~gH~~~V~svafsp~~~dg~~LaS 283 (1331)
+.|+|++|++ ...|.|++++ ..+.....+... ............++++|......+|..
T Consensus 9 ~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv 68 (331)
T PF07995_consen 9 FLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYV 68 (331)
T ss_dssp EETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEE
T ss_pred EeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEE
Confidence 6789988876 4599999999 333321111000 122344567899999993323334433
No 486
>PF13763 DUF4167: Domain of unknown function (DUF4167)
Probab=52.50 E-value=14 Score=34.32 Aligned_cols=29 Identities=17% Similarity=0.335 Sum_probs=26.9
Q ss_pred HHHHHHhhhhccccccchHHHHHHHHHHH
Q 000722 1017 FAKEFLDLIDAADATGQANIAREALKRLA 1045 (1331)
Q Consensus 1017 ~~~~w~~l~~~al~~g~~~~a~~~~~~~~ 1045 (1331)
+.+||.+|+..|+..||--+||-+||.+.
T Consensus 38 l~EKY~~LArDA~ssGDrV~aEny~QHAe 66 (80)
T PF13763_consen 38 LIEKYNQLARDAQSSGDRVLAENYLQHAE 66 (80)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44899999999999999999999999993
No 487
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=52.46 E-value=43 Score=34.03 Aligned_cols=69 Identities=14% Similarity=0.085 Sum_probs=52.1
Q ss_pred ccchhhhhhhHHHHhhccChhhhhhhh-hcCchHHHHHHhhhh-hhHHHHHHhhhccCCCcHHHHHHHHHHHHhhhcc
Q 000722 1070 GELTRLSGLVTNLISLGLGREAAFSAA-ILGDNALMEKAWQDT-GMLAEAVLHAHAHGRPSLKNLVEAWNKMLQKEVD 1145 (1331)
Q Consensus 1070 g~~~~l~~l~~~~~~~~~~~~~af~~~-~lgd~~~~~~~l~~~-~~~~~A~~~A~~~~~~~~~~~~~~w~~~l~~~~~ 1145 (1331)
.+.=.+.++++.|.+.+.+ ..++..+ -.|+.+++++++.+. +.+..|..+|+.-..+. .|...+....+
T Consensus 67 ~~~yd~~~~~~~c~~~~l~-~~~~~l~~k~~~~~~Al~~~l~~~~d~~~a~~~~~~~~~~~------lw~~~~~~~l~ 137 (140)
T smart00299 67 SNHYDIEKVGKLCEKAKLY-EEAVELYKKDGNFKDAIVTLIEHLGNYEKAIEYFVKQNNPE------LWAEVLKALLD 137 (140)
T ss_pred cccCCHHHHHHHHHHcCcH-HHHHHHHHhhcCHHHHHHHHHHcccCHHHHHHHHHhCCCHH------HHHHHHHHHHc
Confidence 3444566677779999998 6666655 889999999999988 88999999999866443 77776654443
No 488
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=52.21 E-value=19 Score=28.04 Aligned_cols=24 Identities=25% Similarity=0.326 Sum_probs=19.1
Q ss_pred EEEEeeCCcEEEEEcCCC--ceeeEE
Q 000722 483 ILSVSSSGKYLAVVWPDI--PYFSVY 506 (1331)
Q Consensus 483 ~ls~SpdGrylaVv~~~~--g~y~Iy 506 (1331)
...+||||++|+.++... |.+.||
T Consensus 13 ~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 13 SPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp EEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CEEEecCCCEEEEEecCCCCCCcCEE
Confidence 678999999998777766 887777
No 489
>PRK13616 lipoprotein LpqB; Provisional
Probab=52.10 E-value=70 Score=41.21 Aligned_cols=151 Identities=17% Similarity=0.134 Sum_probs=79.6
Q ss_pred cccCCCCCCCCceEEEEEe-----ec-ceeEe--eeecccCCCCCccccccccceeeehhhcccCCCcceEeecCCC---
Q 000722 122 GFASPPPSTKGRHFLVICC-----VN-KAIFL--DLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSD--- 190 (1331)
Q Consensus 122 ~V~svafspdg~~lLasgs-----~d-~iIvw--Dl~t~~~~~i~~~~~h~~~V~~Vaf~P~s~Spdg~~LasGs~D--- 190 (1331)
.+.+.+++|+|+.+.++.. .+ ...+| +.. +..+. ... ....++-.| +|+|.+|++.++.
T Consensus 351 ~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~~~--lt~--g~~~t~PsW-----spDG~~lw~v~dg~~~ 420 (591)
T PRK13616 351 NITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVAVQ--VLE--GHSLTRPSW-----SLDADAVWVVVDGNTV 420 (591)
T ss_pred CcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Cccee--eec--CCCCCCceE-----CCCCCceEEEecCcce
Confidence 5677889999985555542 22 22344 432 11111 111 223666777 7888877776533
Q ss_pred ---------ceeeeeehhhheeehhhcCCCccchhhhhHhhhccccEEEeecCCCceEEE---EeccCCCccccccccce
Q 000722 191 ---------GVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLIL---WSADHGQDSRELVPKLS 258 (1331)
Q Consensus 191 ---------GtIrlWDl~t~~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrV---WDl~tg~~~~~~~~~~~ 258 (1331)
+.+.+.++..+.... ...+.|..+. ++|||..++... +|.|.+ -....|. ..+.....
T Consensus 421 ~~v~~~~~~gql~~~~vd~ge~~~----~~~g~Issl~---wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~--~~l~~~~~ 490 (591)
T PRK13616 421 VRVIRDPATGQLARTPVDASAVAS----RVPGPISELQ---LSRDGVRAAMII-GGKVYLAVVEQTEDGQ--YALTNPRE 490 (591)
T ss_pred EEEeccCCCceEEEEeccCchhhh----ccCCCcCeEE---ECCCCCEEEEEE-CCEEEEEEEEeCCCCc--eeecccEE
Confidence 223222333322222 1245688887 699999877654 467766 3333343 11111122
Q ss_pred ee-eccCcEEEEEechhccCCCcEEEeecCceeEeeecc
Q 000722 259 LK-AHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTV 296 (1331)
Q Consensus 259 l~-gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~ 296 (1331)
+. +-...+.++.|.. ++. |+++..++.-.+|.+.
T Consensus 491 l~~~l~~~~~~l~W~~---~~~-L~V~~~~~~~~v~~v~ 525 (591)
T PRK13616 491 VGPGLGDTAVSLDWRT---GDS-LVVGRSDPEHPVWYVN 525 (591)
T ss_pred eecccCCccccceEec---CCE-EEEEecCCCCceEEEe
Confidence 22 2233468899997 555 4565555555566543
No 490
>KOG3771 consensus Amphiphysin [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.91 E-value=1.1e+02 Score=37.42 Aligned_cols=15 Identities=27% Similarity=0.363 Sum_probs=9.7
Q ss_pred CCCCceecCCCCCCC
Q 000722 1175 KKPPIEILPPGMPSL 1189 (1331)
Q Consensus 1175 ~~~~~~~~~~~~~~~ 1189 (1331)
....+++++|-+..+
T Consensus 245 ~~~~~~~~~~~~~~~ 259 (460)
T KOG3771|consen 245 ALPKLEALSPSPTDG 259 (460)
T ss_pred cccchhccCCCCCCc
Confidence 445667777766666
No 491
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=50.45 E-value=16 Score=42.02 Aligned_cols=77 Identities=19% Similarity=0.094 Sum_probs=51.3
Q ss_pred HHHHhhcccccccccCC-Ccccc---eeeeeccccchHHHHHHhhhhcccccccCCCCCCCChhhhcccccchhhHHHHH
Q 000722 936 AQFMLGMGYATEALHLP-GISKR---LEFDLAMQSNDLKRALQCLITMSNSRDIGQDHPGLDLNDILTLTTKKENIVEAV 1011 (1331)
Q Consensus 936 a~fl~~~g~~e~Al~~~-~ds~~---~~f~la~~~g~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1011 (1331)
-+|.+..+.+++|++|. +| +- .|----.+||..+.|.+-+.. +-.++
T Consensus 95 ~~Y~eAv~kY~~AI~l~P~n-AVyycNRAAAy~~Lg~~~~AVkDce~---Al~iD------------------------- 145 (304)
T KOG0553|consen 95 KDYQEAVDKYTEAIELDPTN-AVYYCNRAAAYSKLGEYEDAVKDCES---ALSID------------------------- 145 (304)
T ss_pred hhHHHHHHHHHHHHhcCCCc-chHHHHHHHHHHHhcchHHHHHHHHH---HHhcC-------------------------
Confidence 36777888888888886 55 11 122233466666666655410 00111
Q ss_pred HHHHHHHHHHHhhhhccccccchHHHHHHHHHH
Q 000722 1012 QGIVKFAKEFLDLIDAADATGQANIAREALKRL 1044 (1331)
Q Consensus 1012 ~~~~~~~~~w~~l~~~al~~g~~~~a~~~~~~~ 1044 (1331)
-...+-|-|||-+.+.+|+++.|+++|||+
T Consensus 146 ---p~yskay~RLG~A~~~~gk~~~A~~aykKa 175 (304)
T KOG0553|consen 146 ---PHYSKAYGRLGLAYLALGKYEEAIEAYKKA 175 (304)
T ss_pred ---hHHHHHHHHHHHHHHccCcHHHHHHHHHhh
Confidence 123488999999999999999999999998
No 492
>PRK13684 Ycf48-like protein; Provisional
Probab=49.95 E-value=3.5e+02 Score=32.21 Aligned_cols=237 Identities=9% Similarity=0.002 Sum_probs=0.0
Q ss_pred cccCCCCCCCCceEEEEEeecceeEeeeecccCCCCCccccccccceeeehhhcccCCCcceEeecCCCceeeeeehhhh
Q 000722 122 GFASPPPSTKGRHFLVICCVNKAIFLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISW 201 (1331)
Q Consensus 122 ~V~svafspdg~~lLasgs~d~iIvwDl~t~~~~~i~~~~~h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtIrlWDl~t~ 201 (1331)
.+.++.|.++. .+++|....+++-.-.-.....+............+.. ...+..++.+...+..+--| .+
T Consensus 91 ~l~~v~~~~~~--~~~~G~~g~i~~S~DgG~tW~~~~~~~~~~~~~~~i~~-----~~~~~~~~~g~~G~i~~S~D--gG 161 (334)
T PRK13684 91 RLISISFKGDE--GWIVGQPSLLLHTTDGGKNWTRIPLSEKLPGSPYLITA-----LGPGTAEMATNVGAIYRTTD--GG 161 (334)
T ss_pred ceeeeEEcCCc--EEEeCCCceEEEECCCCCCCeEccCCcCCCCCceEEEE-----ECCCcceeeeccceEEEECC--CC
Q ss_pred eeehhhcCCCccchhhhhHhhhccccEEEeecCCCceEEEEeccCCCccccccccceeeeccCcEEEEEechhccCCCcE
Q 000722 202 KLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQL 281 (1331)
Q Consensus 202 ~~v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~DgtIrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~L 281 (1331)
+.-..+..+-...+.++. +.+++.+++++..-...+.+|-........ ...-...++++.+.+ +++.+
T Consensus 162 ~tW~~~~~~~~g~~~~i~---~~~~g~~v~~g~~G~i~~s~~~gg~tW~~~------~~~~~~~l~~i~~~~---~g~~~ 229 (334)
T PRK13684 162 KNWEALVEDAAGVVRNLR---RSPDGKYVAVSSRGNFYSTWEPGQTAWTPH------QRNSSRRLQSMGFQP---DGNLW 229 (334)
T ss_pred CCceeCcCCCcceEEEEE---ECCCCeEEEEeCCceEEEEcCCCCCeEEEe------eCCCcccceeeeEcC---CCCEE
Q ss_pred EEeecCceeEeeeccchhhhcccCCCCcccccccccccCCCCCCCceeeeeecceeeeeecCccccccccccccccCCCc
Q 000722 282 ITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDILTCVKDSHIWAIEHPTYSALTRPLCELSSLVPP 361 (1331)
Q Consensus 282 aSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg~lLa~s~Dg~IWdl~~~~~~~l~~~~~~~~~~~~~ 361 (1331)
+.+.. |.+++=..+.+..+.. ...........+..+.+.+++.+++++.+|.++.... ........
T Consensus 230 ~vg~~-G~~~~~s~d~G~sW~~--~~~~~~~~~~~l~~v~~~~~~~~~~~G~~G~v~~S~d-----------~G~tW~~~ 295 (334)
T PRK13684 230 MLARG-GQIRFNDPDDLESWSK--PIIPEITNGYGYLDLAYRTPGEIWAGGGNGTLLVSKD-----------GGKTWEKD 295 (334)
T ss_pred EEecC-CEEEEccCCCCCcccc--ccCCccccccceeeEEEcCCCCEEEEcCCCeEEEeCC-----------CCCCCeEC
Q ss_pred cccccccceEEEEEEeccCCccEeeecceeEEEEe
Q 000722 362 QVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIIS 396 (1331)
Q Consensus 362 ~~l~~h~~~~I~~la~sp~~~~lLAtGs~DG~Il~ 396 (1331)
.....-.. ..+.+.|.. +......++.|.||+
T Consensus 296 ~~~~~~~~-~~~~~~~~~--~~~~~~~G~~G~il~ 327 (334)
T PRK13684 296 PVGEEVPS-NFYKIVFLD--PEKGFVLGQRGVLLR 327 (334)
T ss_pred CcCCCCCc-ceEEEEEeC--CCceEEECCCceEEE
No 493
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=49.23 E-value=17 Score=40.51 Aligned_cols=26 Identities=15% Similarity=0.195 Sum_probs=24.7
Q ss_pred HHHHhhhhccccccchHHHHHHHHHH
Q 000722 1019 KEFLDLIDAADATGQANIAREALKRL 1044 (1331)
Q Consensus 1019 ~~w~~l~~~al~~g~~~~a~~~~~~~ 1044 (1331)
.-|.-++......|+.+.|.+.|+++
T Consensus 70 ~a~~~~A~~Yq~~Ge~~~A~e~YrkA 95 (250)
T COG3063 70 LAHLVRAHYYQKLGENDLADESYRKA 95 (250)
T ss_pred HHHHHHHHHHHHcCChhhHHHHHHHH
Confidence 78999999999999999999999998
No 494
>PHA02790 Kelch-like protein; Provisional
Probab=49.13 E-value=84 Score=39.37 Aligned_cols=102 Identities=14% Similarity=0.034 Sum_probs=52.3
Q ss_pred eEEEEEeecc------eeEeeeecccCCCCCccccccccceeeehhhcccCCCcceEeecCCC--ceeeeeehhhh--ee
Q 000722 134 HFLVICCVNK------AIFLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSD--GVIRVLSMISW--KL 203 (1331)
Q Consensus 134 ~lLasgs~d~------iIvwDl~t~~~~~i~~~~~h~~~V~~Vaf~P~s~Spdg~~LasGs~D--GtIrlWDl~t~--~~ 203 (1331)
.++++|+.+. +.+||..+.+...+............+.. ++...+.|+.+ .++..||..++ ..
T Consensus 273 ~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~-------~~~iYviGG~~~~~sve~ydp~~n~W~~ 345 (480)
T PHA02790 273 VVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPA-------NNKLYVVGGLPNPTSVERWFHGDAAWVN 345 (480)
T ss_pred EEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEE-------CCEEEEECCcCCCCceEEEECCCCeEEE
Confidence 3667666432 22557665443333332222222233334 67777888754 35777887643 33
Q ss_pred ehhhcCCCccchhhhhHhhhccccEEEeecCCCc---eEEEEeccCCC
Q 000722 204 VRRYTGGHKGSISCLMTFMASSGEALLVSGGSDG---LLILWSADHGQ 248 (1331)
Q Consensus 204 v~~~~~gH~~~V~~vawf~~spdg~lLaSgs~Dg---tIrVWDl~tg~ 248 (1331)
+..+...... .++ ..-+|.+.+.||.++ .+..||..+.+
T Consensus 346 ~~~l~~~r~~--~~~----~~~~g~IYviGG~~~~~~~ve~ydp~~~~ 387 (480)
T PHA02790 346 MPSLLKPRCN--PAV----ASINNVIYVIGGHSETDTTTEYLLPNHDQ 387 (480)
T ss_pred CCCCCCCCcc--cEE----EEECCEEEEecCcCCCCccEEEEeCCCCE
Confidence 3333211111 111 233778888888654 46788887654
No 495
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=49.11 E-value=23 Score=31.92 Aligned_cols=72 Identities=14% Similarity=0.046 Sum_probs=45.9
Q ss_pred HHHHHhhhhccccccchHHHHHHHHHHHhcccccccccccccccchhhhcccccchhhhhhhHHHHhhccChhhhhhhhh
Q 000722 1018 AKEFLDLIDAADATGQANIAREALKRLAAAGSVKGALQGHELRGLALRLANHGELTRLSGLVTNLISLGLGREAAFSAAI 1097 (1331)
Q Consensus 1018 ~~~w~~l~~~al~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~ll~~~~g~~~~l~~l~~~~~~~~~~~~~af~~~~ 1097 (1331)
...+..||.....+|+++.|+++|+++ - + +....|+... .+ +..- . |.+.....
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~a---l---------~------~~~~~~~~~~--~~---a~~~--~-~lg~~~~~ 58 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKA---L---------D------IEEQLGDDHP--DT---ANTL--N-NLGECYYR 58 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHH---H---------H------HHHHTTTHHH--HH---HHHH--H-HHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH---H---------H------HHHHHCCCCH--HH---HHHH--H-HHHHHHHH
Confidence 367788999999999999999999999 2 1 1223444211 11 1111 1 33444447
Q ss_pred cCchHHHHHHhhhhhhHH
Q 000722 1098 LGDNALMEKAWQDTGMLA 1115 (1331)
Q Consensus 1098 lgd~~~~~~~l~~~~~~~ 1115 (1331)
+||.+++++.+.++=.+-
T Consensus 59 ~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 59 LGDYEEALEYYQKALDIF 76 (78)
T ss_dssp TTHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhhh
Confidence 899999999888765443
No 496
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=48.98 E-value=16 Score=32.93 Aligned_cols=26 Identities=15% Similarity=0.077 Sum_probs=24.4
Q ss_pred HHHHhhhhccccccchHHHHHHHHHH
Q 000722 1019 KEFLDLIDAADATGQANIAREALKRL 1044 (1331)
Q Consensus 1019 ~~w~~l~~~al~~g~~~~a~~~~~~~ 1044 (1331)
..+..||......|+++.|+++|+++
T Consensus 47 ~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 47 NTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 67888999999999999999999998
No 497
>PF07899 Frigida: Frigida-like protein; InterPro: IPR012474 This family is composed of plant proteins that are similar to FRIGIDA protein expressed by Arabidopsis thaliana (Mouse-ear cress) (Q9FDW0 from SWISSPROT). This protein is probably nuclear and is required for the regulation of flowering time in the late-flowering phenotype. It is known to increase RNA levels of flowering locus C. Allelic variation at the FRIGIDA locus is a major determinant of natural variation in flowering time [].
Probab=48.90 E-value=35 Score=39.79 Aligned_cols=91 Identities=21% Similarity=0.120 Sum_probs=65.0
Q ss_pred HHHHHHhhhhccccccchHHHHHHHHHHHhcccccccccccccccchhhhcccccchhhhhhhHHHHhhccChhhhhhhh
Q 000722 1017 FAKEFLDLIDAADATGQANIAREALKRLAAAGSVKGALQGHELRGLALRLANHGELTRLSGLVTNLISLGLGREAAFSAA 1096 (1331)
Q Consensus 1017 ~~~~w~~l~~~al~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~ll~~~~g~~~~l~~l~~~~~~~~~~~~~af~~~ 1096 (1331)
.+..|+.-.+ -...++--.|.-+++-+..||-+ ..=|.+.|.+|+.....+.+. ..-|.+.
T Consensus 111 lA~~WK~~l~-~~~~~~~lea~gFL~lla~fgi~-----------------s~Fd~del~~Lv~~va~~~~a-~~L~~sL 171 (290)
T PF07899_consen 111 LAEEWKSKLD-GVNNENSLEALGFLQLLAAFGIV-----------------SEFDEDELLKLVVSVARRKQA-PELCRSL 171 (290)
T ss_pred HHHHHHHHHH-hcccCCCHHHHHHHHHHHHcCCc-----------------cccCHHHHHHHHHHhcchHhh-HHHHHHc
Confidence 3478986554 55666777888888888877711 111456666666666655554 3334444
Q ss_pred -hcCchHHHHHHhhhhhhHHHHHHhhhccCC
Q 000722 1097 -ILGDNALMEKAWQDTGMLAEAVLHAHAHGR 1126 (1331)
Q Consensus 1097 -~lgd~~~~~~~l~~~~~~~~A~~~A~~~~~ 1126 (1331)
+...+..-|+-|++.|++=+|+.|+.+++=
T Consensus 172 gl~~k~~d~V~~LI~~g~~ieAv~fi~~f~L 202 (290)
T PF07899_consen 172 GLSDKMPDIVEKLIKKGKQIEAVRFIYAFGL 202 (290)
T ss_pred CchhhhHHHHHHHHHCCCccchHHHHHHHcC
Confidence 667789999999999999999999999883
No 498
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=48.75 E-value=85 Score=35.16 Aligned_cols=100 Identities=12% Similarity=0.047 Sum_probs=64.9
Q ss_pred cCCCCCCCCceEEEEEeeccee-Eee--eecccCCCCC---cccc----ccccceeeehhhcccCCCcceEeecCCCcee
Q 000722 124 ASPPPSTKGRHFLVICCVNKAI-FLD--LVTMRGRDIP---KQEL----DNKSLVCMEFLSRSAVGDVPLVAFGSSDGVI 193 (1331)
Q Consensus 124 ~svafspdg~~lLasgs~d~iI-vwD--l~t~~~~~i~---~~~~----h~~~V~~Vaf~P~s~Spdg~~LasGs~DGtI 193 (1331)
+.++|+.+.+.+..+-+.+..+ -|| ..++...... .+.. ..-..-.++. ..+|.+.++.-+.++|
T Consensus 161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~I-----D~eG~L~Va~~ng~~V 235 (310)
T KOG4499|consen 161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTI-----DTEGNLYVATFNGGTV 235 (310)
T ss_pred ccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceE-----ccCCcEEEEEecCcEE
Confidence 4678888888788888888777 575 4555432111 1111 1112223444 4478888888889999
Q ss_pred eeeehhhheeehhhcCCCccchhhhhHhhhccccEEEe
Q 000722 194 RVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLV 231 (1331)
Q Consensus 194 rlWDl~t~~~v~~~~~gH~~~V~~vawf~~spdg~lLa 231 (1331)
.-.|..+|+.+..+. -....|+|++ | .-++-.+|.
T Consensus 236 ~~~dp~tGK~L~eik-lPt~qitscc-F-gGkn~d~~y 270 (310)
T KOG4499|consen 236 QKVDPTTGKILLEIK-LPTPQITSCC-F-GGKNLDILY 270 (310)
T ss_pred EEECCCCCcEEEEEE-cCCCceEEEE-e-cCCCccEEE
Confidence 999999999998886 4578888887 2 344434443
No 499
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=48.72 E-value=16 Score=43.84 Aligned_cols=79 Identities=23% Similarity=0.143 Sum_probs=0.0
Q ss_pred ecccCCchhhhHHHhh---hcccc---chhHHHHHhhcccccccccCCCcccceeeeeccccchHHHHHHhhhhcccccc
Q 000722 911 LAAYGDSVSAVKWASR---LGREH---HDDLAQFMLGMGYATEALHLPGISKRLEFDLAMQSNDLKRALQCLITMSNSRD 984 (1331)
Q Consensus 911 ~~~~~~~~~a~~~~~~---i~~~~---~~~~a~fl~~~g~~e~Al~~~~ds~~~~f~la~~~g~l~~a~~~~~~~~~~~~ 984 (1331)
+...|+|+.|++++.+ +.+.. +..+|..+..+|-+++|+... +.|+++.
T Consensus 12 a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~-----------------~~Al~l~-------- 66 (356)
T PLN03088 12 AFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADA-----------------NKAIELD-------- 66 (356)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH-----------------HHHHHhC--------
Q ss_pred cCCCCCCCChhhhcccccchhhHHHHHHHHHHHHHHHHhhhhccccccchHHHHHHHHHH
Q 000722 985 IGQDHPGLDLNDILTLTTKKENIVEAVQGIVKFAKEFLDLIDAADATGQANIAREALKRL 1044 (1331)
Q Consensus 985 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~~~al~~g~~~~a~~~~~~~ 1044 (1331)
.+.. .-|.++|......|+++.|+.+|+++
T Consensus 67 P~~~------------------------------~a~~~lg~~~~~lg~~~eA~~~~~~a 96 (356)
T PLN03088 67 PSLA------------------------------KAYLRKGTACMKLEEYQTAKAALEKG 96 (356)
T ss_pred cCCH------------------------------HHHHHHHHHHHHhCCHHHHHHHHHHH
No 500
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=48.29 E-value=18 Score=49.19 Aligned_cols=162 Identities=15% Similarity=0.029 Sum_probs=0.0
Q ss_pred ecccCCchhhhHHHhh---hccccchhHHHHHhhc---ccccccccCCCccccee---------eeeccccchHHHHHHh
Q 000722 911 LAAYGDSVSAVKWASR---LGREHHDDLAQFMLGM---GYATEALHLPGISKRLE---------FDLAMQSNDLKRALQC 975 (1331)
Q Consensus 911 ~~~~~~~~~a~~~~~~---i~~~~~~~~a~fl~~~---g~~e~Al~~~~ds~~~~---------f~la~~~g~l~~a~~~ 975 (1331)
++..||+++|.+++.+ +.+.+....+...+.+ |-+++|+......-... -.+..+.|+.+.|++.
T Consensus 552 ll~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~ 631 (987)
T PRK09782 552 AQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSD 631 (987)
T ss_pred HHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHH
Q ss_pred hhhcccccccCCCCCCCChhhhcccccchhhHHHHHHHHHHHHHHHHhhhhccccccchHHHHHHHHHHHhccccccccc
Q 000722 976 LITMSNSRDIGQDHPGLDLNDILTLTTKKENIVEAVQGIVKFAKEFLDLIDAADATGQANIAREALKRLAAAGSVKGALQ 1055 (1331)
Q Consensus 976 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~~~al~~g~~~~a~~~~~~~~~~~~~~~~~~ 1055 (1331)
....... +.+.. ..+..||-.....|+++.|+++|+++
T Consensus 632 l~~AL~l-~Pd~~------------------------------~a~~nLG~aL~~~G~~eeAi~~l~~A----------- 669 (987)
T PRK09782 632 LRAALEL-EPNNS------------------------------NYQAALGYALWDSGDIAQSREMLERA----------- 669 (987)
T ss_pred HHHHHHh-CCCCH------------------------------HHHHHHHHHHHHCCCHHHHHHHHHHH-----------
Q ss_pred ccccccchhhhcccccchhhhhhhHHHHhhccChhhhhhhh--hcCchHHHHHHhhhhhhHHHHHH-hhhcc
Q 000722 1056 GHELRGLALRLANHGELTRLSGLVTNLISLGLGREAAFSAA--ILGDNALMEKAWQDTGMLAEAVL-HAHAH 1124 (1331)
Q Consensus 1056 ~~~~~~l~ll~~~~g~~~~l~~l~~~~~~~~~~~~~af~~~--~lgd~~~~~~~l~~~~~~~~A~~-~A~~~ 1124 (1331)
+-..-++.+-+-.|+......|+. ..|..++ .+--.....++....|.+.++-. |-+.|
T Consensus 670 ---------L~l~P~~~~a~~nLA~al~~lGd~-~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~ 731 (987)
T PRK09782 670 ---------HKGLPDDPALIRQLAYVNQRLDDM-AATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLH 731 (987)
T ss_pred ---------HHhCCCCHHHHHHHHHHHHHCCCH-HHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHH
Done!