Query 000722
Match_columns 1331
No_of_seqs 792 out of 4085
Neff 7.1
Searched_HMMs 29240
Date Tue Mar 26 17:29:17 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000722.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_492-496//hhsearch_pdb/000722hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mkq_A Coatomer beta'-subunit; 1.0 1 1 660.1 39.5 772 3-1145 5-798 (814)
2 1nr0_A Actin interacting prote 1.0 1 1 341.9 22.7 332 8-404 15-357 (611)
3 3sfz_A APAF-1, apoptotic pepti 1.0 1 1 337.2 22.7 345 4-403 608-993 (1249)
4 2ymu_A WD-40 repeat protein; u 1.0 1 1 327.3 20.9 319 4-401 9-333 (577)
5 3sfz_A APAF-1, apoptotic pepti 1.0 1 1 323.7 23.0 202 120-342 615-828 (1249)
6 1nr0_A Actin interacting prote 1.0 1 1 321.4 20.2 433 4-533 52-508 (611)
7 1vyh_C Platelet-activating fac 1.0 1 1 317.5 19.3 287 5-400 102-409 (410)
8 3mkq_A Coatomer beta'-subunit; 1.0 1 1 315.9 17.8 248 4-296 48-301 (814)
9 2ymu_A WD-40 repeat protein; u 1.0 1 1 307.2 16.6 318 4-400 50-373 (577)
10 2oaj_A Protein SNI1; WD40 repe 1.0 1 1 298.8 19.1 207 4-250 10-246 (902)
No 1
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=1.00 E-value=1 Score=660.08 Aligned_cols=772 Identities=18% Similarity=0.254 Sum_probs=572.6
Q ss_pred CCCCCCCCCCCEEEEEEECCCCEEEEECCCCCEEEECCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 44313569973799986058952484159994234214432577451058855300211213210135435679975433
Q 000722 3 RLKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAM 82 (1331)
Q Consensus 3 ~l~~L~gHs~~V~sIafSPdg~~LaSgs~DgtI~IWD~~tg~~i~sl~~~~~~~i~~vs~d~~~Lasgs~d~~g~~l~~l 82 (1331)
..+.|.+|++.|++++|||++++|++++.||.|+|||+.+++.+..+..+
T Consensus 5 ~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~------------------------------ 54 (814)
T 3mkq_A 5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVT------------------------------ 54 (814)
T ss_dssp CEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECC------------------------------
T ss_pred CCEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECC------------------------------
T ss_conf 00045058985689998899998999947998999989999167787338------------------------------
Q ss_pred CCCCEEEEEEECCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCEE-EEEEECCCCCCCCCCC
Q ss_conf 487123775204403689985200000028842123344445899999874299997513146-7652101378888212
Q 000722 83 RGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQE 161 (1331)
Q Consensus 83 ~gg~V~sVaf~Dg~IrIWdl~tg~~l~~~~~~~~~~~~~~V~siaFspdg~~lLvsgs~d~iI-vwDl~t~~~~~i~~~~ 161 (1331)
...|.++.|+|+++ ++++++.++.+ +||+.+++ .+..+.
T Consensus 55 -------------------------------------~~~v~~~~~s~~~~-~l~~~~~dg~i~vw~~~~~~--~~~~~~ 94 (814)
T 3mkq_A 55 -------------------------------------ETPVRAGKFIARKN-WIIVGSDDFRIRVFNYNTGE--KVVDFE 94 (814)
T ss_dssp -------------------------------------SSCEEEEEEEGGGT-EEEEEETTSEEEEEETTTCC--EEEEEE
T ss_pred -------------------------------------CCCEEEEEEECCCC-EEEEEECCCEEEEEECCCCC--EEEEEE
T ss_conf -------------------------------------99688999968999-89999289949999899995--879981
Q ss_pred CCCCCCEEEEHHHCCCCCCCCEEEECCCCCEEEEEEHHHH-EEEHHHCCCCCCCHHHHHHHHHCC-CCEEEEECCCCCEE
Q ss_conf 3665302231011146899666861388751320102231-000111388754233246765113-64799631787359
Q 000722 162 LDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISW-KLVRRYTGGHKGSISCLMTFMASS-GEALLVSGGSDGLL 239 (1331)
Q Consensus 162 ~h~~~V~sIaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~-~~i~~l~~gH~~~V~sIawf~~sp-dg~~LvSgs~DgtI 239 (1331)
.|...|++++| +|+++++++++.||.|++||+.++ .....+. +|...|++++ ++| ++..|++++.||.|
T Consensus 95 ~~~~~v~~~~~-----s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~-~~~~~v~~~~---~~p~~~~~l~~~~~dg~v 165 (814)
T 3mkq_A 95 AHPDYIRSIAV-----HPTKPYVLSGSDDLTVKLWNWENNWALEQTFE-GHEHFVMCVA---FNPKDPSTFASGCLDRTV 165 (814)
T ss_dssp CCSSCEEEEEE-----CSSSSEEEEEETTSEEEEEEGGGTSEEEEEEE-CCSSCEEEEE---EETTEEEEEEEEETTSEE
T ss_pred CCCCCEEEEEE-----ECCCCEEEEECCCCEEEEEECCCCCEEEEEEC-CCCCCEEEEE---EECCCCCEEEEEECCCEE
T ss_conf 68997899999-----58999899992899899998999954879983-7998688999---976999999999488949
Q ss_pred EEEECCCCCCCCCCCCCCEEEE-CCCCEEEEEECHHCCCCCCEEEEECCCEEEEEECCCHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 9982467776333344420000-168579999610116997179950574067410210331102588884332111122
Q 000722 240 ILWSADHGQDSRELVPKLSLKA-HDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASW 318 (1331)
Q Consensus 240 rIWDl~tg~~i~~~~~~~~l~g-H~~~V~sIafsp~~~dg~~LvSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~ 318 (1331)
++||+.++..... +.. +...+.+++|+|. +++.++++++.||.|++||+.+++++.. +.+|...+.
T Consensus 166 ~vwd~~~~~~~~~------~~~~~~~~v~~~~~~~~-~~~~~l~~~~~dg~i~~~d~~~~~~~~~------~~~~~~~v~ 232 (814)
T 3mkq_A 166 KVWSLGQSTPNFT------LTTGQERGVNYVDYYPL-PDKPYMITASDDLTIKIWDYQTKSCVAT------LEGHMSNVS 232 (814)
T ss_dssp EEEETTCSSCSEE------EECCCTTCCCEEEECCS-TTCCEEEEECTTSEEEEEETTTTEEEEE------EECCSSCEE
T ss_pred EEEECCCCCCEEE------EECCCCCCEEEEEEEEC-CCCCEEEEEECCCEEEEEECCCCCEEEE------ECCCCCCEE
T ss_conf 9998999961069------83588897799999977-9998999993899799999999918899------847888878
Q ss_pred CCCCCCCCCEE-EEEECCE--EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCC-EEEECCEEEEE
Q ss_conf 37899998546-6420460--65520574111232221124678962114566248999871367850-75312403799
Q 000722 319 CHPRAPNLDIL-TCVKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPH-LVATGTNVGVI 394 (1331)
Q Consensus 319 siafspdg~lL-s~s~Dg~--IWdi~~~~~~~l~~~i~~~~~~~~~~~l~~h~~~~I~~Ia~sp~~~~-lLAtGs~DG~I 394 (1331)
++.|+|++.++ +++.|+. +|++.++. ....+..+.. .+++++|+|++.. +++++++++.
T Consensus 233 ~~~~~~~~~~l~~~~~dg~v~vwd~~~~~---------------~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~- 295 (814)
T 3mkq_A 233 FAVFHPTLPIIISGSEDGTLKIWNSSTYK---------------VEKTLNVGLE-RSWCIATHPTGRKNYIASGFDNGF- 295 (814)
T ss_dssp EEEECSSSSEEEEEETTSCEEEEETTTCS---------------EEEEECCSSS-SEEEEEECTTCGGGEEEEEETTEE-
T ss_pred EEEECCCCCEEEEEECCCEEEEEECCCCC---------------EEEEEECCCC-CEEEEEECCCCCCEEEEEEECCCE-
T ss_conf 99985999999999089969999899994---------------7778406888-679999924999509999907987-
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCC
Q ss_conf 81038999998898899999977634998630002332211567789888998755448878998860338632022245
Q 000722 395 ISEFDPRSLPAVAPLPTPSGSRDHSAVYIVERELKLVNFQLSSAANPSLGNNGSLSETGRLKGDLPDALQIKQIKKHIST 474 (1331)
Q Consensus 395 IrIWDl~~~p~i~~l~~~s~s~~~s~~~~~~~~l~l~~fq~~~~~~~~lg~~~~ls~~G~~~~~~~e~l~v~~~~r~i~t 474 (1331)
.+|+.........+ +.....++.................. ......+. ... ...+....
T Consensus 296 -~~~~~~~~~~~~~~-----~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~-------~~~--~~~~~~~~ 354 (814)
T 3mkq_A 296 -TVLSLGNDEPTLSL-----DPVGKLVWSGGKNAAASDIFTAVIRG------NEEVEQDE-------PLS--LQTKELGS 354 (814)
T ss_dssp -EEEECSCCSCCEEE-----CSSSEEEEECCTTSCTTCEEEEECCS------CCCCCSSS-------CBC--CCCEEECC
T ss_pred -EEEECCCCCCEEEE-----CCCCCEEEECCCCCCCEEEEEEECCC------CCCCCCCC-------CCE--EEEECCCC
T ss_conf -99976799741677-----79987899776366411246653046------55555676-------201--46511788
Q ss_pred CCCCCCEEEEEEEECCCEEEEECCCCCEEEEEEECCEEEEECCCCEEEEHHCCHHHHHHHHHCCCCCCCCCCCCCCCHHH
Q ss_conf 66788400899840781899982898604688632404753586106620201136777661169995101389981678
Q 000722 475 PVPHDSYSILSVSSSGKYLAVVWPDIPYFSVYKVSDWSIVDSGSARLLAWDTCRDRFAILESALTPRLPIIPKGGSSRKA 554 (1331)
Q Consensus 475 ~~~~e~~s~ls~SpdGkyiaVv~~~~g~~~Iy~i~~~~~i~~G~~~~~aWs~~~~~fAvl~~~~~~~i~~~~k~~~~~k~ 554 (1331)
.... ...+.+||+|+++++.. ++.+.+|++..+.....|.+..++|++++..+|+.....
T Consensus 355 -~~~~-~~~~~~spdg~~la~~~--~~~~~i~~~~~~~~~~~~~i~~~~~spdg~~la~~~~~g---------------- 414 (814)
T 3mkq_A 355 -VDVF-PQSLAHSPNGRFVTVVG--DGEYVIYTALAWRNKAFGKCQDFVWGPDSNSYALIDETG---------------- 414 (814)
T ss_dssp -CSSC-CSEEEECTTSSEEEEEE--TTEEEEEETTTTEEEEEEECSEEEECTTSSCEEEECTTC----------------
T ss_pred -CCCC-CCEEEECCCCCEEEEEC--CCEEEEEECCCCCCCCCCCEEEEEEECCCCEEEEEECCC----------------
T ss_conf -7657-74068999999899942--988999987454456799547999947998599996898----------------
Q ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEEEEECC-CCCCEEEECCCCCCCCEEEECCCEEEEEEEECCCCCCCCHHHHHCCCC
Q ss_conf 9999999999999985114442899999507-863243211389887603210650100134113344621010001011
Q 000722 555 KEAAAAAAAAQAAAASAASSATVQARILLDD-GTSNILMRSIGGSSEPVIGLHGGALLGVAYRTSRRISPIAATAISTIQ 633 (1331)
Q Consensus 555 ke~~~aaa~a~aaa~aaa~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~gg~llgv~~~~~~~~~~~~~~~~~~~~ 633 (1331)
+ ++++... +.. ..+....+...+++++.|+.+.
T Consensus 415 ---------------------~--v~l~~~~~~~~----~~v~~~~~s~dg~~~~~l~~~~------------------- 448 (814)
T 3mkq_A 415 ---------------------Q--IKYYKNFKEVT----SWSVPMHSAIDRLFSGALLGVK------------------- 448 (814)
T ss_dssp ---------------------C--EEEEETTEECT----TCCCCCSSCCCEEECSSSEEEE-------------------
T ss_pred ---------------------C--EEEEECCCCCC----CEEECCCCCCCCEECCEEEEEE-------------------
T ss_conf ---------------------3--99997777752----4397378675523654699996-------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHC------CEEEE
Q ss_conf 232455689998643003788788999776899651331100123247889896431110101143410------10468
Q 000722 634 SMPLSGFGSSGLSSFTTFDDGFSSQKSPAEAAPQNFQLYSWETFQPVGGLLPQPEWTAWDQTVEYCAFA------YQHYI 707 (1331)
Q Consensus 634 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ydw~~~~~~~~~~~~~~~~~w~~~~~~~al~------~~~~i 707 (1331)
....+.+||+++.+.++.+.....++.|++++.++++. +++.+
T Consensus 449 -------------------------------~d~~v~~~d~~~~~~~~~~~~~~~~v~~s~dg~~la~~~~~~~~~~~~~ 497 (814)
T 3mkq_A 449 -------------------------------SDGFVYFFDWDNGTLVRRIDVNAKDVIWSDNGELVMIVNTNSNGDEASG 497 (814)
T ss_dssp -------------------------------ETTEEEEECTTTCCEEEEESSCEEEEEECTTSSEEEEEECCCSSCSCSE
T ss_pred -------------------------------CCCEEEEEECCCCCEEEEEECCCCEEEECCCCCEEEEEECCCCCCCCEE
T ss_conf -------------------------------6998999998769599997358887999699999999986766677428
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCEEEEEEEECCCEEEEECCHHHHHHHHHHHHHHHHHHHCCCEEEE
Q ss_conf 87404644200243012234442013235446426437899782440123200110168865888976677512775799
Q 000722 708 VISSLCPQYRYLGDVAIPYATGAVWHRRQLFVVTPTTIECVFVDAGVAAIDVETMKMKEEMKLKEVQSRAVAEHGELALI 787 (1331)
Q Consensus 708 ~i~~~~~~~~~~~~~~~~~~~s~~w~~~~~f~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 (1331)
+++.++....... + .++. +.+..+++-.|... ..+ .+.++++.|.|++++|
T Consensus 498 ~~~~~~~~~~~~~---~---~~~~-------~~~~~~~~~~~~~~--~~~--------------~~~i~s~~w~~~~~i~ 548 (814)
T 3mkq_A 498 YTLLFNKDAYLEA---A---NNGN-------IDDSEGVDEAFDVL--YEL--------------SESITSGKWVGDVFIF 548 (814)
T ss_dssp EEEEECHHHHHHH---H---HHTC-------CBTTTBCTTTEEEE--EEE--------------CSCCSEEEEETTEEEE
T ss_pred EEEEECHHHHHHH---H---HCCC-------CCCCCCHHHHEEEE--EEE--------------CCEEEEEEEECCEEEE
T ss_conf 9999546886666---6---4168-------76212502221364--576--------------4278765980888999
Q ss_pred EECCCCHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCEEEECCCCEEEEEEECC
Q ss_conf 95043010002333589602413311345688999842378754336998989410201000127871785089996148
Q 000722 788 AVESSQTAAQDRIKLRPPMLQVVRLASFQHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVAVTRFP 867 (1331)
Q Consensus 788 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~i~~l~ 867 (1331)
+.. .+++.|..+|+..++.+++
T Consensus 549 ~t~----------------------------------------------------------~~~~~~~~~~~~~~~~~~~ 570 (814)
T 3mkq_A 549 TTA----------------------------------------------------------TNRLNYFVGGKTYNLAHYT 570 (814)
T ss_dssp ECT----------------------------------------------------------TSEEEEEETTEEEEEEECS
T ss_pred ECC----------------------------------------------------------CCEEEEEECCEEEEEEECC
T ss_conf 768----------------------------------------------------------8708999698668999989
Q ss_pred CCCCCCCCCEEEEEE--ECCEEEEEHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHH-HHHHHC-CCCCHHHHHHHHHCC
Q ss_conf 876677877699864--0537763214643201135798611364000389302667-876611-111012889985021
Q 000722 868 TEQKRPIGPLVVVGV--KDGVLWLIDRYMCAHALSLSHPGIRCRCLAAYGDSVSAVK-WASRLG-REHHDDLAQFMLGMG 943 (1331)
Q Consensus 868 ~~~~~~~~~~~~~g~--~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~-~~~~i~-~~~~~~~a~fl~~~G 943 (1331)
.++|++|| .+++++++|++.++..+.|+..+++|++++.+++++.|.+ +++.|+ +.+++++++||+++|
T Consensus 571 -------~~~~~~~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~l~~i~~~~~~~~~~~~l~~~~ 643 (814)
T 3mkq_A 571 -------KEMYLLGYLARDNKVYLADREVHVYGYEISLEVLEFQTLTLRGEIEEAIENVLPNVEGKDSLTKIARFLEGQE 643 (814)
T ss_dssp -------SCCEEEEEEGGGTEEEEECTTCCEEEEECCHHHHHHHHHHHTTCHHHHHHHTGGGCCCHHHHHHHHHHHHHTT
T ss_pred -------CCEEEEEEEECCCEEEEECCCCCEEEEEECCHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCC
T ss_conf -------6679999983299999992888879999890999996998707999999888742884678999999998689
Q ss_pred CCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 00001358896322000001252018999875421136655689888888000102222003199998879999999874
Q 000722 944 YATEALHLPGISKRLEFDLAMQSNDLKRALQCLITMSNSRDIGQDHPGLDLNDILTLTTKKENIVEAVQGIVKFAKEFLD 1023 (1331)
Q Consensus 944 ~~e~Al~~~~ds~~~kf~la~~~g~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~ 1023 (1331)
++|+||++++| +.++|++++++|+++.|++++ +.++.+ .+|++
T Consensus 644 ~~~~a~~~~~~-~~~~f~~~l~~~~~~~A~~~~------~~~~~~------------------------------~~W~~ 686 (814)
T 3mkq_A 644 YYEEALNISPD-QDQKFELALKVGQLTLARDLL------TDESAE------------------------------MKWRA 686 (814)
T ss_dssp CHHHHHHHCCC-HHHHHHHHHHHTCHHHHHHHH------TTCCCH------------------------------HHHHH
T ss_pred CHHHHEECCCC-CCHHEEHHHHCCCHHHHHHHH------HHHCCH------------------------------HHHHH
T ss_conf 86896052789-314250214509999999999------861767------------------------------68999
Q ss_pred HHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHH-HCCCHH
Q ss_conf 5210000120378999999998514531112321101100010346651334345677876056702334553-317528
Q 000722 1024 LIDAADATGQANIAREALKRLAAAGSVKGALQGHELRGLALRLANHGELTRLSGLVTNLISLGLGREAAFSAA-ILGDNA 1102 (1331)
Q Consensus 1024 l~~~al~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~ll~~~~g~~~~l~~l~~~~~~~~~~~~~af~~~-~lgd~~ 1102 (1331)
||++|+.+|++++|++||+++ + |+++|.+||...|+.+++.+|+++++.+|+. +.||.++ ++||++
T Consensus 687 la~~al~~~~~~~A~~~y~~~---~---------d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~~-~~A~~~~~~~g~~~ 753 (814)
T 3mkq_A 687 LGDASLQRFNFKLAIEAFTNA---H---------DLESLFLLHSSFNNKEGLVTLAKDAETTGKF-NLAFNAYWIAGDIQ 753 (814)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH---T---------CHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH-HHHHHHHHHHTCHH
T ss_pred HHHHHHHCCCHHHHHHHHHHC---C---------CHHHHHHHHHHCCCHHHHHHHHHHHHHCCCH-HHHHHHHHHCCCHH
T ss_conf 999999849989999999870---2---------7135589987729999999999999985866-79999998809999
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHHHCC
Q ss_conf 88987531013799998542039970--78899999999862115
Q 000722 1103 LMEKAWQDTGMLAEAVLHAHAHGRPS--LKNLVEAWNKMLQKEVD 1145 (1331)
Q Consensus 1103 ~~~~~l~~~~~~~~A~~~A~t~~~~~--~~~~~~~w~~~l~~~~~ 1145 (1331)
+|+++|++++++++|+++|++|+|+. +++++++|++.|....+
T Consensus 754 ~a~~~~~~~~~~~~A~~lA~~~~~~~~~i~~~~~~~~~~L~~~~~ 798 (814)
T 3mkq_A 754 GAKDLLIKSQRFSEAAFLGSTYGLGDNEVNDIVTKWKENLILNGK 798 (814)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf 999999986994789999987099757889999999999876164
No 2
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=1.00 E-value=1 Score=341.90 Aligned_cols=332 Identities=14% Similarity=0.169 Sum_probs=236.4
Q ss_pred CCCCCCEEEEEEECCCCEEEEECCCCCEEEECCCCCEEEEEECCCCCCCCHHHH--HHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 569973799986058952484159994234214432577451058855300211--213210135435679975433487
Q 000722 8 RPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVG--AKLEKLAEGELEHKGKPTEAMRGG 85 (1331)
Q Consensus 8 ~gHs~~V~sIafSPdg~~LaSgs~DgtI~IWD~~tg~~i~sl~~~~~~~i~~vs--~d~~~Lasgs~d~~g~~l~~l~gg 85 (1331)
..+.+.+.+++|+|+|++|++++ ++.|++|++.++.....+. +|.+.+.++. |+++.+++++
T Consensus 15 ~~~~g~~~~~~~spdg~~l~~~~-~~~v~l~~~~~~~~~~~~~-~h~~~v~~~~~spdg~~lasg~-------------- 78 (611)
T 1nr0_A 15 RTARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYT-EHSHQTTVAKTSPSGYYCASGD-------------- 78 (611)
T ss_dssp CCCTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEEC-CCSSCEEEEEECTTSSEEEEEE--------------
T ss_pred CCCCCCEEEEEECCCCCEEEECC-CCEEEEECCCCCCCCEEEC-CCCCCEEEEEECCCCCEEEEEE--------------
T ss_conf 74068236976679999799679-9979994578724273765-8998659999999996899994--------------
Q ss_pred CEEEEEEECCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECC-----EEEEEEECCCCCCCCCC
Q ss_conf 1237752044036899852000000288421233444458999998742999975131-----46765210137888821
Q 000722 86 SVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNK-----AIFLDLVTMRGRDIPKQ 160 (1331)
Q Consensus 86 ~V~sVaf~Dg~IrIWdl~tg~~l~~~~~~~~~~~~~~V~siaFspdg~~lLvsgs~d~-----iIvwDl~t~~~~~i~~~ 160 (1331)
.|++|++||+.+++... .....+| ...|.+++|+|+++ .+++++.+. +.+||. +. ....+
T Consensus 79 -------~d~~v~lWd~~~~~~~~--~~~~~~~-~~~v~~v~fs~dg~-~l~~~~~~~~~~~~v~~wd~--~~--~~~~l 143 (611)
T 1nr0_A 79 -------VHGNVRIWDTTQTTHIL--KTTIPVF-SGPVKDISWDSESK-RIAAVGEGRERFGHVFLFDT--GT--SNGNL 143 (611)
T ss_dssp -------TTSEEEEEESSSTTCCE--EEEEECS-SSCEEEEEECTTSC-EEEEEECCSSCSEEEEETTT--CC--BCBCC
T ss_pred -------CCCCEEEEECCCCCCEE--EEEECCC-CCCEEEEEECCCCC-EEEEEECCCCCEEEEEEEEC--CC--CCCEE
T ss_conf -------89978994898984156--6762255-78448999899999-79999899773669999638--99--76325
Q ss_pred CCCCCCCEEEEHHHCCCCCCCC-EEEECCCCCEEEEEEHHHHEEEHHHCCCCCCCHHHHHHHHHCCCCEEEEECCCCCEE
Q ss_conf 2366530223101114689966-686138875132010223100011138875423324676511364799631787359
Q 000722 161 ELDNKSLVCMEFLSRSAVGDVP-LVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLL 239 (1331)
Q Consensus 161 ~~h~~~V~sIaf~P~s~Spdg~-~LasGs~DGtIrIWDl~t~~~i~~l~~gH~~~V~sIawf~~spdg~~LvSgs~DgtI 239 (1331)
..|...|++++| +|++. .+++|+.|++|++||..++++...+. +|...|.+++ |+|++.+|++++.|++|
T Consensus 144 ~gh~~~v~~v~f-----~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~-~H~~~V~~v~---fspdg~~las~s~D~~i 214 (611)
T 1nr0_A 144 TGQARAMNSVDF-----KPSRPFRIISGSDDNTVAIFEGPPFKFKSTFG-EHTKFVHSVR---YNPDGSLFASTGGDGTI 214 (611)
T ss_dssp CCCSSCEEEEEE-----CSSSSCEEEEEETTSCEEEEETTTBEEEEEEC-CCSSCEEEEE---ECTTSSEEEEEETTSCE
T ss_pred CCCCCCCEEEEE-----CCCCCEEEEEEECCCEEEEEECCCCEEEEEEC-CCCCCEEEEE---ECCCCCEEEEEECCCCE
T ss_conf 478898369998-----89998299999289809999799975766520-0257169999---97999989999899919
Q ss_pred EEEECCCCCCCCCCC-CCCEEEECCCCEEEEEECHHCCCCCCEEEEECCCEEEEEECCCHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 998246777633334-4420000168579999610116997179950574067410210331102588884332111122
Q 000722 240 ILWSADHGQDSRELV-PKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASW 318 (1331)
Q Consensus 240 rIWDl~tg~~i~~~~-~~~~l~gH~~~V~sIafsp~~~dg~~LvSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~ 318 (1331)
++||..+++....+. ......+|.+.|.+++|+| ++.+|++++.|++|++||+.+++++.++... ..+.....
T Consensus 215 ~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~sp---dg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~---~~~~~~~~ 288 (611)
T 1nr0_A 215 VLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSP---DGTKIASASADKTIKIWNVATLKVEKTIPVG---TRIEDQQL 288 (611)
T ss_dssp EEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECT---TSSEEEEEETTSEEEEEETTTTEEEEEEECC---SSGGGCEE
T ss_pred EEEECCCCCEEEEECCCCCCCCCCCCCEEEEEECC---CCCEEEEEECCCEEEEEECCCCCEEEEECCC---CCCCCEEE
T ss_conf 99889998286651366432356678789999979---9999999908980999968887013440478---87664068
Q ss_pred CCCCCCCCCEEEEEECCE--EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCEEEECCEEEEEEE
Q ss_conf 378999985466420460--655205741112322211246789621145662489998713678507531240379981
Q 000722 319 CHPRAPNLDILTCVKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIIS 396 (1331)
Q Consensus 319 siafspdg~lLs~s~Dg~--IWdi~~~~~~~l~~~i~~~~~~~~~~~l~~h~~~~I~~Ia~sp~~~~lLAtGs~DG~IIr 396 (1331)
.+.|. ...+++++.|+. +|+...+. ....+.+|.. .|++++|+| ++.++++++.||.| +
T Consensus 289 ~~~~~-~~~l~s~s~d~~i~~~~~~~~~---------------~~~~~~gh~~-~v~~l~~sp-dg~~l~s~s~D~~v-~ 349 (611)
T 1nr0_A 289 GIIWT-KQALVSISANGFINFVNPELGS---------------IDQVRYGHNK-AITALSSSA-DGKTLFSADAEGHI-N 349 (611)
T ss_dssp EEEEC-SSCEEEEETTCCEEEEETTTTE---------------EEEEECCCSS-CEEEEEECT-TSSEEEEEETTSCE-E
T ss_pred EEEEC-CCEEEEEECCCCEEEEECCCCC---------------CCEEECCCCC-CEEEEEEEC-CCCEEEEEECCCCE-E
T ss_conf 99973-8879999589968999688997---------------4469837888-889999918-99989999589849-9
Q ss_pred ECCCCCCC
Q ss_conf 03899999
Q 000722 397 EFDPRSLP 404 (1331)
Q Consensus 397 IWDl~~~p 404 (1331)
+||+....
T Consensus 350 ~Wd~~~~~ 357 (611)
T 1nr0_A 350 SWDISTGI 357 (611)
T ss_dssp EEETTTCC
T ss_pred EEECCCCC
T ss_conf 99788792
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=1.00 E-value=1 Score=337.20 Aligned_cols=345 Identities=14% Similarity=0.143 Sum_probs=260.4
Q ss_pred CCCCCCCCCCEEEEEEECCCCEEEEECCCCCEEEECCCCCEEEEEECCCCCCCCHHHH--HHHHHHCCCCCCCCCCCCCC
Q ss_conf 4313569973799986058952484159994234214432577451058855300211--21321013543567997543
Q 000722 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVG--AKLEKLAEGELEHKGKPTEA 81 (1331)
Q Consensus 4 l~~L~gHs~~V~sIafSPdg~~LaSgs~DgtI~IWD~~tg~~i~sl~~~~~~~i~~vs--~d~~~Lasgs~d~~g~~l~~ 81 (1331)
...+.+|.+.|++++|+|++++|++|+.||+|++||..+++.+.++. +|...+.++. ++++.+++++
T Consensus 608 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~-~h~~~v~~~~~s~~~~~l~s~~---------- 676 (1249)
T 3sfz_A 608 RLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIK-AHEDEVLCCAFSSDDSYIATCS---------- 676 (1249)
T ss_dssp SEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEEC-CCSSCEEEEEECTTSSEEEEEE----------
T ss_pred EEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEC-CCCCCEEEEEEECCCCEEEEEE----------
T ss_conf 27871666648999987999989999488949999989997888760-6777789999926999899981----------
Q ss_pred CCCCCEEEEEEECCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC-CEEEEEEEECCEE-EEEEECCCCCCCCC
Q ss_conf 348712377520440368998520000002884212334444589999987-4299997513146-76521013788882
Q 000722 82 MRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKG-RHFLVICCVNKAI-FLDLVTMRGRDIPK 159 (1331)
Q Consensus 82 l~gg~V~sVaf~Dg~IrIWdl~tg~~l~~~~~~~~~~~~~~V~siaFspdg-~~lLvsgs~d~iI-vwDl~t~~~~~i~~ 159 (1331)
.|+.|++||+.+++.+ ....+| ...|.++.|+|++ ..++++++.|+.+ +||+.+++ .+..
T Consensus 677 -----------~d~~v~vwd~~~~~~~----~~~~~~-~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~--~~~~ 738 (1249)
T 3sfz_A 677 -----------ADKKVKIWDSATGKLV----HTYDEH-SEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKE--CRNT 738 (1249)
T ss_dssp -----------TTSEEEEEETTTCCEE----EEEECC-SSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSS--EEEE
T ss_pred -----------CCCEEEEEECCCCCEE----EEECCC-CCCEEEEEEECCCCCEEEEEEECCCEEEEEECCCCC--HHHE
T ss_conf -----------8995999877999368----999589-973799998408996599998089709999899963--4220
Q ss_pred CCCCCCCCEEEEHHHCCCCCCCCEEEECCCCCEEEEEEHHHHEEEHHHCC------------CCCCCHHHHHHHHHCCCC
Q ss_conf 12366530223101114689966686138875132010223100011138------------875423324676511364
Q 000722 160 QELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTG------------GHKGSISCLMTFMASSGE 227 (1331)
Q Consensus 160 ~~~h~~~V~sIaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~~~i~~l~~------------gH~~~V~sIawf~~spdg 227 (1331)
...|...|++++| +|++.++++++.||.|++||+.+++....+.. .+...+.+++ +++++
T Consensus 739 ~~~h~~~v~~~~~-----sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~---~s~dg 810 (1249)
T 3sfz_A 739 MFGHTNSVNHCRF-----SPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCS---WSADG 810 (1249)
T ss_dssp ECCCSSCEEEEEE-----CSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCC---BCTTS
T ss_pred ECCCCCCEEEEEE-----ECCCCEEEEEECCCEEEEEECCCCCCCCEECCCCCCCCCCCCCCCCCCEEEEEE---ECCCC
T ss_conf 1277797889999-----259998999978985999968888655302023210246776445650179999---97899
Q ss_pred EEEEECCCCCEEEEEECCCCCCCCCCCCCCEEEECCCCEEEEEECHHCCCCCCEEEEECCCEEEEEECCCHHHHCCCCCC
Q ss_conf 79963178735999824677763333444200001685799996101169971799505740674102103311025888
Q 000722 228 ALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPV 307 (1331)
Q Consensus 228 ~~LvSgs~DgtIrIWDl~tg~~i~~~~~~~~l~gH~~~V~sIafsp~~~dg~~LvSgs~Dg~IrIWDl~t~~~l~~~~~~ 307 (1331)
..+++++ ++.+.+||..++...... ..+|...|.+++|+| ++.++++++.|+.|++||+.++..+..
T Consensus 811 ~~l~~~~-~~~v~~~d~~~~~~~~~~-----~~~~~~~v~~~~~sp---~~~~l~~~~~dg~v~vwd~~~~~~~~~---- 877 (1249)
T 3sfz_A 811 DKIIVAA-KNKVLLFDIHTSGLLAEI-----HTGHHSTIQYCDFSP---YDHLAVIALSQYCVELWNIDSRLKVAD---- 877 (1249)
T ss_dssp SEEEEEE-TTEEEEEETTTCCEEEEE-----ECSSSSCCCEEEECS---STTEEEEECSSSCEEEEETTTTEEEEE----
T ss_pred CEEEEEC-CCCEEEEEECCCCCEEEE-----CCCCCCCEEEEEECC---CCCEEEEEECCCEEEEEECCCCCEEEE----
T ss_conf 8899975-895999995689723577-----478777607999827---888899994798699998678956532----
Q ss_pred CCCCCCCCCCCCCCCCCCCCEE-EEEECCE--EEEEECCCCCCCC---CC-----------CCCCCCCC--------CCC
Q ss_conf 8433211112237899998546-6420460--6552057411123---22-----------21124678--------962
Q 000722 308 PKLACHSVASWCHPRAPNLDIL-TCVKDSH--IWAIEHPTYSALT---RP-----------LCELSSLV--------PPQ 362 (1331)
Q Consensus 308 ~~l~~H~~~V~siafspdg~lL-s~s~Dg~--IWdi~~~~~~~l~---~~-----------i~~~~~~~--------~~~ 362 (1331)
+.+|...|+++.|+|++..+ +++.|+. +|++......... .. ........ ...
T Consensus 878 --~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 955 (1249)
T 3sfz_A 878 --CRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQ 955 (1249)
T ss_dssp --ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCC
T ss_pred --CCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEEECCCCCEEEEECCCCE
T ss_conf --278766568999989999899995897289887466520102113310368975998689981377624898447650
Q ss_pred CCCCCCCEEEEEEEECCCCCCEEEECCEEEEEEEECCCCCC
Q ss_conf 11456624899987136785075312403799810389999
Q 000722 363 VLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPRSL 403 (1331)
Q Consensus 363 ~l~~h~~~~I~~Ia~sp~~~~lLAtGs~DG~IIrIWDl~~~ 403 (1331)
....+.. .+.+++|+| ++.++++|+.+|.| ++|+....
T Consensus 956 ~~~~~~~-~i~~~~~sp-~g~~l~~g~~~g~i-~i~d~~~~ 993 (1249)
T 3sfz_A 956 IDYLPEA-QVSCCCLSP-HLEYVAFGDEDGAI-KIIELPNN 993 (1249)
T ss_dssp EEEECCS-CEEEEEECT-TSSEEEEEETTSCC-EEEETTTT
T ss_pred EEECCCC-CEEEEEECC-CCCEEEEECCCCCE-EEEECCCC
T ss_conf 8972567-278999958-99779998699988-99975787
No 4
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=1.00 E-value=1 Score=327.34 Aligned_cols=319 Identities=18% Similarity=0.267 Sum_probs=234.5
Q ss_pred CCCCCCCCCCEEEEEEECCCCEEEEECCCCCEEEECCCCCEEEEEECCCCCCCCHHHH--HHHHHHCCCCCCCCCCCCCC
Q ss_conf 4313569973799986058952484159994234214432577451058855300211--21321013543567997543
Q 000722 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVG--AKLEKLAEGELEHKGKPTEA 81 (1331)
Q Consensus 4 l~~L~gHs~~V~sIafSPdg~~LaSgs~DgtI~IWD~~tg~~i~sl~~~~~~~i~~vs--~d~~~Lasgs~d~~g~~l~~ 81 (1331)
.+.|+||++.|+|++|||+|++|++|+.|++|+|||. +++++.++. +|...+.++. |+++.|++++
T Consensus 9 ~~~L~GH~~~V~~~a~spdg~~las~~~d~~v~iWd~-~~~~~~~l~-gh~~~V~~l~fspdg~~las~~---------- 76 (577)
T 2ymu_A 9 RNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT-GHSSSVWGVAFSPDGQTIASAS---------- 76 (577)
T ss_dssp EEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEE-CCSSCEEEEEECTTSSEEEEEE----------
T ss_pred EEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEEC-CCCEEEEEE-CCCCCEEEEEECCCCCEEEEEE----------
T ss_conf 4398789985799999899899999938998999979-997899996-8989989999989999999996----------
Q ss_pred CCCCCEEEEEEECCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCEE-EEEEECCCCCCCCCC
Q ss_conf 3487123775204403689985200000028842123344445899999874299997513146-765210137888821
Q 000722 82 MRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQ 160 (1331)
Q Consensus 82 l~gg~V~sVaf~Dg~IrIWdl~tg~~l~~~~~~~~~~~~~~V~siaFspdg~~lLvsgs~d~iI-vwDl~t~~~~~i~~~ 160 (1331)
.|+.|++||.. ++.+ ....+| ...|.+++|+|+++ ++++++.++.+ +|+.... .....
T Consensus 77 -----------~d~~i~vWd~~-~~~~----~~~~~~-~~~v~~~~~s~d~~-~l~~~~~d~~~~~~~~~~~---~~~~~ 135 (577)
T 2ymu_A 77 -----------DDKTVKLWNRN-GQLL----QTLTGH-SSSVRGVAFSPDGQ-TIASASDDKTVKLWNRNGQ---LLQTL 135 (577)
T ss_dssp -----------TTSCEEEEETT-SCEE----EEECCC-SSCEEEEEECTTSS-EEEEEETTSCEEEEETTCC---EEEEE
T ss_pred -----------CCCEEEEEECC-CCEE----EEEECC-CCCEEEEEECCCCC-EEEEECCCCCEEECCCCCC---EEEEC
T ss_conf -----------98979999899-9789----999789-99889999989999-8999807983352023552---00110
Q ss_pred CCCCCCCEEEEHHHCCCCCCCCEEEECCCCCEEEEEEHHHHEEEHHHCCCCCCCHHHHHHHHHCCCCEEEEECCCCCEEE
Q ss_conf 23665302231011146899666861388751320102231000111388754233246765113647996317873599
Q 000722 161 ELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLI 240 (1331)
Q Consensus 161 ~~h~~~V~sIaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~~~i~~l~~gH~~~V~sIawf~~spdg~~LvSgs~DgtIr 240 (1331)
..+...+.++.+ ++++..+++++.++.+++|+.... ...... .|...|.++. +++++.++++++.|+.|+
T Consensus 136 ~~~~~~v~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~v~~~~---~~~~~~~l~~~~~d~~v~ 205 (577)
T 2ymu_A 136 TGHSSSVWGVAF-----SPDGQTIASASDDKTVKLWNRNGQ-LLQTLT-GHSSSVWGVA---FSPDGQTIASASDDKTVK 205 (577)
T ss_dssp CCCSSCEEEEEE-----CTTSSCEEEEETTSEEEEECTTSC-EEEEEE-CCSSCEEEEE---ECTTSSCEEEEETTSEEE
T ss_pred CCCCCCEEEEEE-----ECCCCCCEECCCCCCEECCCCCEE-EEEECC-CCCCCEEEEE---ECCCCCEEEEECCCCEEE
T ss_conf 477774355542-----037763200255531000000000-000026-8776356654---169977899985999899
Q ss_pred EEECCCCCCCCCCCCCCEEEECCCCEEEEEECHHCCCCCCEEEEECCCEEEEEECCCHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 98246777633334442000016857999961011699717995057406741021033110258888433211112237
Q 000722 241 LWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCH 320 (1331)
Q Consensus 241 IWDl~tg~~i~~~~~~~~l~gH~~~V~sIafsp~~~dg~~LvSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~si 320 (1331)
+||.. ++.. ..+.+|...|.+++|+| ++.+|++++.|+.|++||.. ++.+.. +.+|...|.++
T Consensus 206 ~w~~~-~~~~------~~~~~~~~~v~~~~~s~---dg~~l~~~~~d~~i~~w~~~-~~~~~~------~~~~~~~v~~v 268 (577)
T 2ymu_A 206 LWNRN-GQLL------QTLTGHSSSVRGVAFSP---DGQTIASASDDKTVKLWNRN-GQLLQT------LTGHSSSVNGV 268 (577)
T ss_dssp EECTT-SCEE------EEEECCSSCEEEEEECT---TSSCEEEEETTSCEEEECTT-SCEEEE------ECCCSSCEEEE
T ss_pred EEECC-CCEE------EEEECCCCCEEEEEECC---CCCEEEEEECCCEEEEEECC-CCEEEE------EECCCCCEEEE
T ss_conf 99499-9689------99946889889999979---99999999189989999599-979999------80688987999
Q ss_pred CCCCCCCEE-EEEECCE--EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCEEEECCEEEEEEEE
Q ss_conf 899998546-6420460--6552057411123222112467896211456624899987136785075312403799810
Q 000722 321 PRAPNLDIL-TCVKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISE 397 (1331)
Q Consensus 321 afspdg~lL-s~s~Dg~--IWdi~~~~~~~l~~~i~~~~~~~~~~~l~~h~~~~I~~Ia~sp~~~~lLAtGs~DG~IIrI 397 (1331)
.|+|++..+ +++.|+. +|+.... ....+.+|.. .|++++|+| ++..+++++.||.+ ++
T Consensus 269 ~~~~d~~~l~~~~~d~~i~~w~~~~~----------------~~~~~~~h~~-~v~~~~~~~-~~~~l~t~~~d~~i-~~ 329 (577)
T 2ymu_A 269 AFRPDGQTIASASDDKTVKLWNRNGQ----------------LLQTLTGHSS-SVWGVAFSP-DGQTIASASDDKTV-KL 329 (577)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTSC----------------EEEEECCCSS-CEEEEEECT-TSSEEEEEETTSCE-EE
T ss_pred EECCCCCEEEEEECCCEEEEEECCCC----------------EEEEEECCCC-CEEEEEECC-CCCEEEEEECCCEE-EE
T ss_conf 99689999999959997999948995----------------8999706889-769999999-99999999699959-99
Q ss_pred CCCC
Q ss_conf 3899
Q 000722 398 FDPR 401 (1331)
Q Consensus 398 WDl~ 401 (1331)
|+..
T Consensus 330 w~~~ 333 (577)
T 2ymu_A 330 WNRN 333 (577)
T ss_dssp EETT
T ss_pred EECC
T ss_conf 9699
No 5
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=1.00 E-value=1 Score=323.66 Aligned_cols=202 Identities=21% Similarity=0.320 Sum_probs=120.8
Q ss_pred CCCCCCCCCCCCCCEEEEEEEECCEE-EEEEECCCCCCCCCCCCCCCCCEEEEHHHCCCCCCCCEEEECCCCCEEEEEEH
Q ss_conf 44445899999874299997513146-76521013788882123665302231011146899666861388751320102
Q 000722 120 TSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSM 198 (1331)
Q Consensus 120 ~~~V~siaFspdg~~lLvsgs~d~iI-vwDl~t~~~~~i~~~~~h~~~V~sIaf~P~s~Spdg~~LasGs~DGtIrIWDl 198 (1331)
...|++++|+|+++ ++++++.|+.+ +||..+++ .+..+..|...|.+++| +|++.++++|+.|+.|++||+
T Consensus 615 ~~~v~~~~~s~~~~-~l~s~~~d~~i~vw~~~~~~--~~~~~~~h~~~v~~~~~-----s~~~~~l~s~~~d~~v~vwd~ 686 (1249)
T 3sfz_A 615 TDAVYHACFSQDGQ-RIASCGADKTLQVFKAETGE--KLLDIKAHEDEVLCCAF-----SSDDSYIATCSADKKVKIWDS 686 (1249)
T ss_dssp SSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCC--EEEEECCCSSCEEEEEE-----CTTSSEEEEEETTSEEEEEET
T ss_pred CCCEEEEEECCCCC-EEEEEECCCEEEEEECCCCC--EEEEECCCCCCEEEEEE-----ECCCCEEEEEECCCEEEEEEC
T ss_conf 66489999879999-89999488949999989997--88876067777899999-----269998999818995999877
Q ss_pred HHHEEEHHHCCCCCCCHHHHHHHHHCC--CCEEEEECCCCCEEEEEECCCCCCCCCCCCCCEEEECCCCEEEEEECHHCC
Q ss_conf 231000111388754233246765113--647996317873599982467776333344420000168579999610116
Q 000722 199 ISWKLVRRYTGGHKGSISCLMTFMASS--GEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMG 276 (1331)
Q Consensus 199 ~t~~~i~~l~~gH~~~V~sIawf~~sp--dg~~LvSgs~DgtIrIWDl~tg~~i~~~~~~~~l~gH~~~V~sIafsp~~~ 276 (1331)
.+++++..+. +|...|.++. +++ ++.++++|+.|+.|++||+.++..... +.+|...|++++|+|
T Consensus 687 ~~~~~~~~~~-~~~~~v~~~~---~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~------~~~h~~~v~~~~~sp--- 753 (1249)
T 3sfz_A 687 ATGKLVHTYD-EHSEQVNCCH---FTNKSNHLLLATGSNDFFLKLWDLNQKECRNT------MFGHTNSVNHCRFSP--- 753 (1249)
T ss_dssp TTCCEEEEEE-CCSSCEEEEE---ECSSSSCCEEEEEETTSCEEEEETTSSSEEEE------ECCCSSCEEEEEECS---
T ss_pred CCCCEEEEEC-CCCCCEEEEE---EECCCCCEEEEEEECCCEEEEEECCCCCHHHE------ECCCCCCEEEEEEEC---
T ss_conf 9993689995-8997379999---84089965999980897099998999634220------127779788999925---
Q ss_pred CCCCEEEEECCCEEEEEECCCHHHHCCCCCCCC-------CCCCCCCCCCCCCCCCCCEEEEEECCE--EEEEEC
Q ss_conf 997179950574067410210331102588884-------332111122378999985466420460--655205
Q 000722 277 GSPQLITIGADKTLAIWDTVSFKELRRIKPVPK-------LACHSVASWCHPRAPNLDILTCVKDSH--IWAIEH 342 (1331)
Q Consensus 277 dg~~LvSgs~Dg~IrIWDl~t~~~l~~~~~~~~-------l~~H~~~V~siafspdg~lLs~s~Dg~--IWdi~~ 342 (1331)
++.++++++.||.|++||+.++.....+..... ...+...+.+++|+|++..++++.++. +|++.+
T Consensus 754 ~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~ 828 (1249)
T 3sfz_A 754 DDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHT 828 (1249)
T ss_dssp STTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTT
T ss_pred CCCEEEEEECCCEEEEEECCCCCCCCEECCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEECCCCEEEEEECC
T ss_conf 999899997898599996888865530202321024677644565017999997899889997589599999568
No 6
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=1.00 E-value=1 Score=321.41 Aligned_cols=433 Identities=12% Similarity=0.105 Sum_probs=293.8
Q ss_pred CCCCCCCCCCEEEEEEECCCCEEEEECCCCCEEEECCCCCE--EEEEECCCCCCCCHHHH--HHHHHHCCCCCCCCCCCC
Q ss_conf 43135699737999860589524841599942342144325--77451058855300211--213210135435679975
Q 000722 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQ--VIYELKAGGVDQRRLVG--AKLEKLAEGELEHKGKPT 79 (1331)
Q Consensus 4 l~~L~gHs~~V~sIafSPdg~~LaSgs~DgtI~IWD~~tg~--~i~sl~~~~~~~i~~vs--~d~~~Lasgs~d~~g~~l 79 (1331)
++.|.+|.+.|++++|+|+|++|++|+.|++|+|||+.+++ +...+. +|...+..+. |+++.+++++.+.
T Consensus 52 ~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~-~~~~~v~~v~fs~dg~~l~~~~~~~----- 125 (611)
T 1nr0_A 52 TEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIP-VFSGPVKDISWDSESKRIAAVGEGR----- 125 (611)
T ss_dssp CEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEE-CSSSCEEEEEECTTSCEEEEEECCS-----
T ss_pred CEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCEEEEEEC-CCCCCEEEEEECCCCCEEEEEECCC-----
T ss_conf 7376589986599999999968999948997899489898415667622-5578448999899999799998997-----
Q ss_pred CCCCCCCEEEEEEECCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCEE-EEEEECCCCCCCC
Q ss_conf 433487123775204403689985200000028842123344445899999874299997513146-7652101378888
Q 000722 80 EAMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIP 158 (1331)
Q Consensus 80 ~~l~gg~V~sVaf~Dg~IrIWdl~tg~~l~~~~~~~~~~~~~~V~siaFspdg~~lLvsgs~d~iI-vwDl~t~~~~~i~ 158 (1331)
. .++.|++||. +... ....+| ...|++++|+|+++..+++++.|+.+ +||..+++ ...
T Consensus 126 -----~-------~~~~v~~wd~--~~~~----~~l~gh-~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~--~~~ 184 (611)
T 1nr0_A 126 -----E-------RFGHVFLFDT--GTSN----GNLTGQ-ARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFK--FKS 184 (611)
T ss_dssp -----S-------CSEEEEETTT--CCBC----BCCCCC-SSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBE--EEE
T ss_pred -----C-------CEEEEEEEEC--CCCC----CEECCC-CCCCEEEEECCCCCEEEEEEECCCEEEEEECCCCE--EEE
T ss_conf -----7-------3669999638--9976----325478-89836999889998299999289809999799975--766
Q ss_pred CCCCCCCCCEEEEHHHCCCCCCCCEEEECCCCCEEEEEEHHHHEEEHHHCC------CCCCCHHHHHHHHHCCCCEEEEE
Q ss_conf 212366530223101114689966686138875132010223100011138------87542332467651136479963
Q 000722 159 KQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTG------GHKGSISCLMTFMASSGEALLVS 232 (1331)
Q Consensus 159 ~~~~h~~~V~sIaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~~~i~~l~~------gH~~~V~sIawf~~spdg~~LvS 232 (1331)
.+..|...|++++| +|++.++++|+.|++|++||..+++++..+.. +|...|.+++ |+|++.+|++
T Consensus 185 ~l~~H~~~V~~v~f-----spdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~---~spdg~~l~s 256 (611)
T 1nr0_A 185 TFGEHTKFVHSVRY-----NPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLT---WSPDGTKIAS 256 (611)
T ss_dssp EECCCSSCEEEEEE-----CTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEE---ECTTSSEEEE
T ss_pred EECCCCCCEEEEEE-----CCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCCCCCEEEEE---ECCCCCEEEE
T ss_conf 52002571699999-----799998999989991999889998286651366432356678789999---9799999999
Q ss_pred CCCCCEEEEEECCCCCCCCCCCCCCEEEECCCCEEEEEECHHCCCCCCEEEEECCCEEEEEECCCHHHHCCCCCCCCCCC
Q ss_conf 17873599982467776333344420000168579999610116997179950574067410210331102588884332
Q 000722 233 GGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLAC 312 (1331)
Q Consensus 233 gs~DgtIrIWDl~tg~~i~~~~~~~~l~gH~~~V~sIafsp~~~dg~~LvSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~ 312 (1331)
++.|++|++||+.++++...+.. -..+...+..+.| ++..+++++.|+.+++|+...+.+... +.+
T Consensus 257 ~s~D~~v~lWd~~~~~~~~~~~~---~~~~~~~~~~~~~-----~~~~l~s~s~d~~i~~~~~~~~~~~~~------~~g 322 (611)
T 1nr0_A 257 ASADKTIKIWNVATLKVEKTIPV---GTRIEDQQLGIIW-----TKQALVSISANGFINFVNPELGSIDQV------RYG 322 (611)
T ss_dssp EETTSEEEEEETTTTEEEEEEEC---CSSGGGCEEEEEE-----CSSCEEEEETTCCEEEEETTTTEEEEE------ECC
T ss_pred EECCCEEEEEECCCCCEEEEECC---CCCCCCEEEEEEE-----CCCEEEEEECCCCEEEEECCCCCCCEE------ECC
T ss_conf 90898099996888701344047---8876640689997-----388799995899689996889974469------837
Q ss_pred CCCCCCCCCCCCCCCEE-EEEECCE--EEEEECCCCCCCCCCCCCCCCCCCCCCC-CCCCCEEEEEEEECCCCCCEEEEC
Q ss_conf 11112237899998546-6420460--6552057411123222112467896211-456624899987136785075312
Q 000722 313 HSVASWCHPRAPNLDIL-TCVKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVL-AHHKKLRVYCMVAHSLQPHLVATG 388 (1331)
Q Consensus 313 H~~~V~siafspdg~lL-s~s~Dg~--IWdi~~~~~~~l~~~i~~~~~~~~~~~l-~~h~~~~I~~Ia~sp~~~~lLAtG 388 (1331)
|...|++++|+|++.+| +++.|++ +||+.++.. ...+ ..|.. .+.++.|++ ++. ++++
T Consensus 323 h~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~---------------~~~~~~~h~~-~v~~~~~s~-~~~-l~s~ 384 (611)
T 1nr0_A 323 HNKAITALSSSADGKTLFSADAEGHINSWDISTGIS---------------NRVFPDVHAT-MITGIKTTS-KGD-LFTV 384 (611)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE---------------EECSSCSCSS-CEEEEEECT-TSC-EEEE
T ss_pred CCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCCE---------------EEECCCCCCC-EEEEEEECC-CCC-EEEE
T ss_conf 888889999918999899995898499997887925---------------6321667765-078999878-996-9999
Q ss_pred CEEEEEEEECCCCCCCCCCCCC---CCCCCCCCCEEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 4037998103899999889889---9999977634998630002332211567789888998755448878998860338
Q 000722 389 TNVGVIISEFDPRSLPAVAPLP---TPSGSRDHSAVYIVERELKLVNFQLSSAANPSLGNNGSLSETGRLKGDLPDALQI 465 (1331)
Q Consensus 389 s~DG~IIrIWDl~~~p~i~~l~---~~s~s~~~s~~~~~~~~l~l~~fq~~~~~~~~lg~~~~ls~~G~~~~~~~e~l~v 465 (1331)
+.|+.+ ++|+........... ..... ...+.+..++...+ ...++ .+.+
T Consensus 385 s~d~~v-~~w~~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~~~------------------~~~~~--------~v~~ 436 (611)
T 1nr0_A 385 SWDDHL-KVVPAGGSGVDSSKAVANKLSSQ-PLGLAVSADGDIAV------------------AACYK--------HIAI 436 (611)
T ss_dssp ETTTEE-EEECSSSSSSCTTSCCEEECSSC-EEEEEECTTSSCEE------------------EEESS--------EEEE
T ss_pred ECCCCE-EEEECCCCCCCCCCEEEEECCCC-CCEEEEECCCCEEE------------------EEECC--------EEEE
T ss_conf 848966-89546885435652120014899-70799807996999------------------99676--------3999
Q ss_pred HHHCCCCCCCCCCCCEEEEEEEECCCEEEEECCCCCEEEEEEECCEEE------EECCCCEEEEHHCCHHHHHH
Q ss_conf 632022245667884008998407818999828986046886324047------53586106620201136777
Q 000722 466 KQIKKHISTPVPHDSYSILSVSSSGKYLAVVWPDIPYFSVYKVSDWSI------VDSGSARLLAWDTCRDRFAI 533 (1331)
Q Consensus 466 ~~~~r~i~t~~~~e~~s~ls~SpdGkyiaVv~~~~g~~~Iy~i~~~~~------i~~G~~~~~aWs~~~~~fAv 533 (1331)
....+......... ...+.+||||+++++ ...++.+.+|++..... ...+.+.+++|+|+...+|.
T Consensus 437 ~~~~~~~~~~~~~~-v~~va~spdg~~las-gs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~las 508 (611)
T 1nr0_A 437 YSHGKLTEVPISYN-SSCVALSNDKQFVAV-GGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVA 508 (611)
T ss_dssp EETTEEEEEECSSC-EEEEEECTTSCEEEE-EETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEE
T ss_pred EECCCEEEEECCCC-CEEEEEECCCCEEEE-ECCCCEEEEEECCCCCEEEEECCCCCCCEEEEEECCCCCEEEE
T ss_conf 84894346406889-549999289989999-6899739999945992224101577886079999899998999
No 7
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=1.00 E-value=1 Score=317.49 Aligned_cols=287 Identities=18% Similarity=0.291 Sum_probs=159.8
Q ss_pred CCCCCCCCCEEEEEEECCCCEEEEECCCCCEEEECCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 31356997379998605895248415999423421443257745105885530021121321013543567997543348
Q 000722 5 KAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRG 84 (1331)
Q Consensus 5 ~~L~gHs~~V~sIafSPdg~~LaSgs~DgtI~IWD~~tg~~i~sl~~~~~~~i~~vs~d~~~Lasgs~d~~g~~l~~l~g 84 (1331)
..+.+|.+.|++++|+|++++|++|+.|++|+|||+.+++.+..+..|
T Consensus 102 ~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h-------------------------------- 149 (410)
T 1vyh_C 102 YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGH-------------------------------- 149 (410)
T ss_dssp CEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCC--------------------------------
T ss_pred EEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECC--------------------------------
T ss_conf 766166776899999699998999938985999989999377888166--------------------------------
Q ss_pred CCEEEEEEECCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCEE-EEEEECCCCCCCCCCCCC
Q ss_conf 7123775204403689985200000028842123344445899999874299997513146-765210137888821236
Q 000722 85 GSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQELD 163 (1331)
Q Consensus 85 g~V~sVaf~Dg~IrIWdl~tg~~l~~~~~~~~~~~~~~V~siaFspdg~~lLvsgs~d~iI-vwDl~t~~~~~i~~~~~h 163 (1331)
...|.+++|+|+++ ++++|+.|+.+ +||+.+++ .+..+..|
T Consensus 150 -----------------------------------~~~V~~v~~~~~~~-~l~sgs~D~~i~iwd~~~~~--~~~~~~~h 191 (410)
T 1vyh_C 150 -----------------------------------TDSVQDISFDHSGK-LLASCSADMTIKLWDFQGFE--CIRTMHGH 191 (410)
T ss_dssp -----------------------------------SSCEEEEEECTTSS-EEEEEETTSCCCEEETTSSC--EEECCCCC
T ss_pred -----------------------------------CCCEEEEEECCCCC-EEEEEECCCEEEEEECCCCC--EEEEECCC
T ss_conf -----------------------------------78687899859999-99999189819999589982--66998289
Q ss_pred CCCCEEEEHHHCCCCCCCCEEEECCCCCEEEEEEHHHHEEEHHHCCCCCCCHHHHHHHHHCCCCEEEEECCCCCEEEEEE
Q ss_conf 65302231011146899666861388751320102231000111388754233246765113647996317873599982
Q 000722 164 NKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWS 243 (1331)
Q Consensus 164 ~~~V~sIaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~~~i~~l~~gH~~~V~sIawf~~spdg~~LvSgs~DgtIrIWD 243 (1331)
...|.++.| +|++.++++|+.|++|++||+.++.++..+. +|...|.++. +++++.+|++|+.|++|++||
T Consensus 192 ~~~V~~v~~-----~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~-~h~~~v~~~~---~~~~g~~l~s~s~D~~v~vwd 262 (410)
T 1vyh_C 192 DHNVSSVSI-----MPNGDHIVSASRDKTIKMWEVQTGYCVKTFT-GHREWVRMVR---PNQDGTLIASCSNDQTVRVWV 262 (410)
T ss_dssp SSCEEEEEE-----CSSSSEEEEEETTSEEEEEETTTCCEEEEEE-CCSSCEEEEE---ECTTSSEEEEEETTSCEEEEE
T ss_pred CCCEEEEEE-----ECCCCEEEEEECCCEEEEEECCCCCEEEEEE-CCCCCEEEEE---ECCCCCEEEEECCCCEEEEEE
T ss_conf 997789999-----6799999999689969999899994899992-7886289999---989999999991899099998
Q ss_pred CCCCCCCCCCCCCCEEEECCCCEEEEEECHHCC-----------------CCCCEEEEECCCEEEEEECCCHHHHCCCCC
Q ss_conf 467776333344420000168579999610116-----------------997179950574067410210331102588
Q 000722 244 ADHGQDSRELVPKLSLKAHDGGVVAVELSRVMG-----------------GSPQLITIGADKTLAIWDTVSFKELRRIKP 306 (1331)
Q Consensus 244 l~tg~~i~~~~~~~~l~gH~~~V~sIafsp~~~-----------------dg~~LvSgs~Dg~IrIWDl~t~~~l~~~~~ 306 (1331)
+.++.+... +.+|...|.++.|+|... .+.+|++|+.|+.|++||++++.++..
T Consensus 263 ~~~~~~~~~------~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~--- 333 (410)
T 1vyh_C 263 VATKECKAE------LREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMT--- 333 (410)
T ss_dssp TTTCCEEEE------ECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEE---
T ss_pred CCCCCEEEE------ECCCCCEEEEEEECCCCCCCCHHHHCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCEEEE---
T ss_conf 989743667------33787458999985865543101212555556678888999993898499998899966999---
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEE-EEEECCE--EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCC
Q ss_conf 88433211112237899998546-6420460--65520574111232221124678962114566248999871367850
Q 000722 307 VPKLACHSVASWCHPRAPNLDIL-TCVKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPH 383 (1331)
Q Consensus 307 ~~~l~~H~~~V~siafspdg~lL-s~s~Dg~--IWdi~~~~~~~l~~~i~~~~~~~~~~~l~~h~~~~I~~Ia~sp~~~~ 383 (1331)
+.+|...|.++.|+|++.++ +++.|++ +||+... .+...+..|.. .|++++|+| ++.
T Consensus 334 ---~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~---------------~~~~~~~~h~~-~v~~l~~~~-~~~ 393 (410)
T 1vyh_C 334 ---LVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNK---------------RCMKTLNAHEH-FVTSLDFHK-TAP 393 (410)
T ss_dssp ---EECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTS---------------CCCEEEECCSS-CEEEEEECS-SSS
T ss_pred ---EECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCC---------------CEEEEECCCCC-CEEEEEECC-CCC
T ss_conf ---9778885899999499899999959792999989999---------------06899847778-689999828-999
Q ss_pred EEEECCEEEEEEEECCC
Q ss_conf 75312403799810389
Q 000722 384 LVATGTNVGVIISEFDP 400 (1331)
Q Consensus 384 lLAtGs~DG~IIrIWDl 400 (1331)
++++|+.||.| ++|++
T Consensus 394 ~l~sgs~D~~i-~vW~~ 409 (410)
T 1vyh_C 394 YVVTGSVDQTV-KVWEC 409 (410)
T ss_dssp CEEEEETTSEE-EEEC-
T ss_pred EEEEEECCCCE-EEEEC
T ss_conf 99999279948-99737
No 8
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=1.00 E-value=1 Score=315.87 Aligned_cols=248 Identities=14% Similarity=0.227 Sum_probs=128.6
Q ss_pred CCCCCCCCCCEEEEEEECCCCEEEEECCCCCEEEECCCCCEEEEEECCCCCCCCHHHH--HHHHHHCCCCCCCCCCCCCC
Q ss_conf 4313569973799986058952484159994234214432577451058855300211--21321013543567997543
Q 000722 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVG--AKLEKLAEGELEHKGKPTEA 81 (1331)
Q Consensus 4 l~~L~gHs~~V~sIafSPdg~~LaSgs~DgtI~IWD~~tg~~i~sl~~~~~~~i~~vs--~d~~~Lasgs~d~~g~~l~~ 81 (1331)
++.+.+|...|++++|+|++++|++++.||.|++||+.+++.+..+..+ ...+..+. ++++.+++++
T Consensus 48 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~---------- 116 (814)
T 3mkq_A 48 VRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAH-PDYIRSIAVHPTKPYVLSGS---------- 116 (814)
T ss_dssp EEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECC-SSCEEEEEECSSSSEEEEEE----------
T ss_pred EEEEECCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEEECC-CCCEEEEEEECCCCEEEEEC----------
T ss_conf 7787338996889999689998999928994999989999587998168-99789999958999899992----------
Q ss_pred CCCCCEEEEEEECCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC-CCCEEEEEEEECCEE-EEEEECCCCCCCCC
Q ss_conf 3487123775204403689985200000028842123344445899999-874299997513146-76521013788882
Q 000722 82 MRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPST-KGRHFLVICCVNKAI-FLDLVTMRGRDIPK 159 (1331)
Q Consensus 82 l~gg~V~sVaf~Dg~IrIWdl~tg~~l~~~~~~~~~~~~~~V~siaFsp-dg~~lLvsgs~d~iI-vwDl~t~~~~~i~~ 159 (1331)
.|+.|++|++.++.... ....+| ...+.+++|+| ++. .+++++.++.+ +||+.++.. ...
T Consensus 117 -----------~dg~i~vw~~~~~~~~~---~~~~~~-~~~v~~~~~~p~~~~-~l~~~~~dg~v~vwd~~~~~~--~~~ 178 (814)
T 3mkq_A 117 -----------DDLTVKLWNWENNWALE---QTFEGH-EHFVMCVAFNPKDPS-TFASGCLDRTVKVWSLGQSTP--NFT 178 (814)
T ss_dssp -----------TTSEEEEEEGGGTSEEE---EEEECC-SSCEEEEEEETTEEE-EEEEEETTSEEEEEETTCSSC--SEE
T ss_pred -----------CCCEEEEEECCCCCEEE---EEECCC-CCCEEEEEEECCCCC-EEEEEECCCEEEEEECCCCCC--EEE
T ss_conf -----------89989999899995487---998379-986889999769999-999994889499998999961--069
Q ss_pred CC-CCCCCCEEEEHHHCCCCCCCCEEEECCCCCEEEEEEHHHHEEEHHHCCCCCCCHHHHHHHHHCCCCEEEEECCCCCE
Q ss_conf 12-36653022310111468996668613887513201022310001113887542332467651136479963178735
Q 000722 160 QE-LDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGL 238 (1331)
Q Consensus 160 ~~-~h~~~V~sIaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~~~i~~l~~gH~~~V~sIawf~~spdg~~LvSgs~Dgt 238 (1331)
.. .+...+.+++|+| .+++.++++++.||.|++||..+++++..+. +|...|.+++ ++|++.++++++.||.
T Consensus 179 ~~~~~~~~v~~~~~~~---~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~~v~~~~---~~~~~~~l~~~~~dg~ 251 (814)
T 3mkq_A 179 LTTGQERGVNYVDYYP---LPDKPYMITASDDLTIKIWDYQTKSCVATLE-GHMSNVSFAV---FHPTLPIIISGSEDGT 251 (814)
T ss_dssp EECCCTTCCCEEEECC---STTCCEEEEECTTSEEEEEETTTTEEEEEEE-CCSSCEEEEE---ECSSSSEEEEEETTSC
T ss_pred EECCCCCCEEEEEEEE---CCCCCEEEEEECCCEEEEEECCCCCEEEEEC-CCCCCEEEEE---ECCCCCEEEEEECCCE
T ss_conf 8358889779999997---7999899999389979999999991889984-7888878999---8599999999908996
Q ss_pred EEEEECCCCCCCCCCCCCCEEEECCCCEEEEEECHHCCCCC-CEEEEECCCEEEEEECC
Q ss_conf 99982467776333344420000168579999610116997-17995057406741021
Q 000722 239 LILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSP-QLITIGADKTLAIWDTV 296 (1331)
Q Consensus 239 IrIWDl~tg~~i~~~~~~~~l~gH~~~V~sIafsp~~~dg~-~LvSgs~Dg~IrIWDl~ 296 (1331)
|++||+.+++.... +..|...+.+++|+| ++. .+++.+.|+.+.+|++.
T Consensus 252 v~vwd~~~~~~~~~------~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 301 (814)
T 3mkq_A 252 LKIWNSSTYKVEKT------LNVGLERSWCIATHP---TGRKNYIASGFDNGFTVLSLG 301 (814)
T ss_dssp EEEEETTTCSEEEE------ECCSSSSEEEEEECT---TCGGGEEEEEETTEEEEEECS
T ss_pred EEEEECCCCCEEEE------EECCCCCEEEEEECC---CCCCEEEEEEECCCEEEEECC
T ss_conf 99998999947778------406888679999924---999509999907987999767
No 9
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=1.00 E-value=1 Score=307.17 Aligned_cols=318 Identities=18% Similarity=0.290 Sum_probs=176.7
Q ss_pred CCCCCCCCCCEEEEEEECCCCEEEEECCCCCEEEECCCCCEEEEEECCCCCCCCHHHH--HHHHHHCCCCCCCCCCCCCC
Q ss_conf 4313569973799986058952484159994234214432577451058855300211--21321013543567997543
Q 000722 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVG--AKLEKLAEGELEHKGKPTEA 81 (1331)
Q Consensus 4 l~~L~gHs~~V~sIafSPdg~~LaSgs~DgtI~IWD~~tg~~i~sl~~~~~~~i~~vs--~d~~~Lasgs~d~~g~~l~~ 81 (1331)
+++|.+|...|++++|+|++++|++++.|++|+|||. +++++..+.. |...+..+. ++++.+++++.
T Consensus 50 ~~~l~gh~~~V~~l~fspdg~~las~~~d~~i~vWd~-~~~~~~~~~~-~~~~v~~~~~s~d~~~l~~~~~--------- 118 (577)
T 2ymu_A 50 LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTG-HSSSVRGVAFSPDGQTIASASD--------- 118 (577)
T ss_dssp EEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEET-TSCEEEEECC-CSSCEEEEEECTTSSEEEEEET---------
T ss_pred EEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEEC-CCCEEEEEEC-CCCCEEEEEECCCCCEEEEECC---------
T ss_conf 9999689899899999899999999969897999989-9978999978-9998899999899998999807---------
Q ss_pred CCCCCEEEEEEECCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCEE-EEEEECCCCCCCCCC
Q ss_conf 3487123775204403689985200000028842123344445899999874299997513146-765210137888821
Q 000722 82 MRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQ 160 (1331)
Q Consensus 82 l~gg~V~sVaf~Dg~IrIWdl~tg~~l~~~~~~~~~~~~~~V~siaFspdg~~lLvsgs~d~iI-vwDl~t~~~~~i~~~ 160 (1331)
|+.+++|+...... ....++ ...+..+.++|++. .++.++.+..+ +|+... ......
T Consensus 119 ------------d~~~~~~~~~~~~~-----~~~~~~-~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~~~~ 176 (577)
T 2ymu_A 119 ------------DKTVKLWNRNGQLL-----QTLTGH-SSSVWGVAFSPDGQ-TIASASDDKTVKLWNRNG---QLLQTL 176 (577)
T ss_dssp ------------TSCEEEEETTCCEE-----EEECCC-SSCEEEEEECTTSS-CEEEEETTSEEEEECTTS---CEEEEE
T ss_pred ------------CCCEEECCCCCCEE-----EECCCC-CCCEEEEEEECCCC-CCEECCCCCCEECCCCCE---EEEEEC
T ss_conf ------------98335202355200-----110477-77435554203776-320025553100000000---000002
Q ss_pred CCCCCCCEEEEHHHCCCCCCCCEEEECCCCCEEEEEEHHHHEEEHHHCCCCCCCHHHHHHHHHCCCCEEEEECCCCCEEE
Q ss_conf 23665302231011146899666861388751320102231000111388754233246765113647996317873599
Q 000722 161 ELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLI 240 (1331)
Q Consensus 161 ~~h~~~V~sIaf~P~s~Spdg~~LasGs~DGtIrIWDl~t~~~i~~l~~gH~~~V~sIawf~~spdg~~LvSgs~DgtIr 240 (1331)
..+...+.++.| ++++.++++++.|+.|++||.. ++.+..+. +|...|.+++ +++++.+|++++.|+.|+
T Consensus 177 ~~~~~~v~~~~~-----~~~~~~l~~~~~d~~v~~w~~~-~~~~~~~~-~~~~~v~~~~---~s~dg~~l~~~~~d~~i~ 246 (577)
T 2ymu_A 177 TGHSSSVWGVAF-----SPDGQTIASASDDKTVKLWNRN-GQLLQTLT-GHSSSVRGVA---FSPDGQTIASASDDKTVK 246 (577)
T ss_dssp ECCSSCEEEEEE-----CTTSSCEEEEETTSEEEEECTT-SCEEEEEE-CCSSCEEEEE---ECTTSSCEEEEETTSCEE
T ss_pred CCCCCCEEEEEE-----CCCCCEEEEECCCCEEEEEECC-CCEEEEEE-CCCCCEEEEE---ECCCCCEEEEEECCCEEE
T ss_conf 687763566541-----6997789998599989999499-96899994-6889889999---979999999991899899
Q ss_pred EEECCCCCCCCCCCCCCEEEECCCCEEEEEECHHCCCCCCEEEEECCCEEEEEECCCHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 98246777633334442000016857999961011699717995057406741021033110258888433211112237
Q 000722 241 LWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCH 320 (1331)
Q Consensus 241 IWDl~tg~~i~~~~~~~~l~gH~~~V~sIafsp~~~dg~~LvSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~si 320 (1331)
+||.. ++.+ ..+.+|...|++++|+| ++..+++++.|+.|++|+.. ++.+.. +.+|...|+++
T Consensus 247 ~w~~~-~~~~------~~~~~~~~~v~~v~~~~---d~~~l~~~~~d~~i~~w~~~-~~~~~~------~~~h~~~v~~~ 309 (577)
T 2ymu_A 247 LWNRN-GQLL------QTLTGHSSSVNGVAFRP---DGQTIASASDDKTVKLWNRN-GQLLQT------LTGHSSSVWGV 309 (577)
T ss_dssp EECTT-SCEE------EEECCCSSCEEEEEECT---TSSEEEEEETTSCEEEEETT-SCEEEE------ECCCSSCEEEE
T ss_pred EEECC-CCEE------EEEECCCCCEEEEEECC---CCCEEEEEECCCEEEEEECC-CCEEEE------EECCCCCEEEE
T ss_conf 99599-9799------99806889879999968---99999999599979999489-958999------70688976999
Q ss_pred CCCCCCCEE-EEEECCE--EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCEEEECCEEEEEEEE
Q ss_conf 899998546-6420460--6552057411123222112467896211456624899987136785075312403799810
Q 000722 321 PRAPNLDIL-TCVKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISE 397 (1331)
Q Consensus 321 afspdg~lL-s~s~Dg~--IWdi~~~~~~~l~~~i~~~~~~~~~~~l~~h~~~~I~~Ia~sp~~~~lLAtGs~DG~IIrI 397 (1331)
+|+|++.++ +++.|+. +|+.... ....+..|.. .+++++|+| ++..+++|+.||.+ ++
T Consensus 310 ~~~~~~~~l~t~~~d~~i~~w~~~~~----------------~~~~~~~~~~-~v~~~~~s~-~g~~l~~~~~dg~v-~~ 370 (577)
T 2ymu_A 310 AFSPDGQTIASASDDKTVKLWNRNGQ----------------HLQTLTGHSS-SVWGVAFSP-DGQTIASASDDKTV-KL 370 (577)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTSC----------------EEEEECCCSS-CEEEEEECT-TSSEEEEEETTSEE-EE
T ss_pred EECCCCCEEEEEECCCEEEEEECCCC----------------EEEEEECCCC-CEEEEEECC-CCCEEEEEECCCEE-EE
T ss_conf 99999999999969995999969997----------------2578747889-779999989-99999999699989-99
Q ss_pred CCC
Q ss_conf 389
Q 000722 398 FDP 400 (1331)
Q Consensus 398 WDl 400 (1331)
|+.
T Consensus 371 ~~~ 373 (577)
T 2ymu_A 371 WNR 373 (577)
T ss_dssp EET
T ss_pred ECC
T ss_conf 908
No 10
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=298.81 Aligned_cols=207 Identities=11% Similarity=0.109 Sum_probs=128.3
Q ss_pred CCCCCCCCCCEEEEEEECCCCEEEEECCCCCEEEECCCCCEEEEEECCCCCCCCHHHH--HHHHHHCCCCCCCCCCCCCC
Q ss_conf 4313569973799986058952484159994234214432577451058855300211--21321013543567997543
Q 000722 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVG--AKLEKLAEGELEHKGKPTEA 81 (1331)
Q Consensus 4 l~~L~gHs~~V~sIafSPdg~~LaSgs~DgtI~IWD~~tg~~i~sl~~~~~~~i~~vs--~d~~~Lasgs~d~~g~~l~~ 81 (1331)
.....||.+.|++++|+|++.+||+|+.||+|+||+..+.+++..+. |...+..+. + ++.|++++
T Consensus 10 ~~~~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~--~~~~V~~l~fsp-g~~L~S~s---------- 76 (902)
T 2oaj_A 10 ETNKYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLE--DRSAIKEMRFVK-GIYLVVIN---------- 76 (902)
T ss_dssp EEEEEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECS--SCCCEEEEEEET-TTEEEEEE----------
T ss_pred CCCCCCCCCCCEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEECC--CCCCEEEEEECC-CCEEEEEE----------
T ss_conf 20216889984899997999989999297989999689947999868--999779999908-98899998----------
Q ss_pred CCCCCEEEEEEECCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCEE-EEEEECCCCCCC---
Q ss_conf 3487123775204403689985200000028842123344445899999874299997513146-765210137888---
Q 000722 82 MRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDI--- 157 (1331)
Q Consensus 82 l~gg~V~sVaf~Dg~IrIWdl~tg~~l~~~~~~~~~~~~~~V~siaFspdg~~lLvsgs~d~iI-vwDl~t~~~~~i--- 157 (1331)
.|+.|++||+.+++++.. . .+ ...|++++|+|+++ ++++|+.|+.+ +||+.++.....
T Consensus 77 -----------~D~~v~lWd~~~~~~~~~----~-~~-~~~V~~v~~sp~g~-~l~sgs~dg~V~lwd~~~~~~~~~~i~ 138 (902)
T 2oaj_A 77 -----------AKDTVYVLSLYSQKVLTT----V-FV-PGKITSIDTDASLD-WMLIGLQNGSMIVYDIDRDQLSSFKLD 138 (902)
T ss_dssp -----------TTCEEEEEETTTCSEEEE----E-EC-SSCEEEEECCTTCS-EEEEEETTSCEEEEETTTTEEEEEEEC
T ss_pred -----------CCCEEEEEECCCCCEEEE----E-CC-CCCEEEEEECCCCC-EEEEECCCCCEEEEECCCCCCCCCEEC
T ss_conf -----------959599998999968999----7-48-99879999879999-899994999299999999962650304
Q ss_pred ------CCCCCCCCCCEEEEHHHCCCCCC-CCEEEECCCCCEEEEEEHHHHEEEHHHCC-----------------CCCC
Q ss_conf ------82123665302231011146899-66686138875132010223100011138-----------------8754
Q 000722 158 ------PKQELDNKSLVCMEFLSRSAVGD-VPLVAFGSSDGVIRVLSMISWKLVRRYTG-----------------GHKG 213 (1331)
Q Consensus 158 ------~~~~~h~~~V~sIaf~P~s~Spd-g~~LasGs~DGtIrIWDl~t~~~i~~l~~-----------------gH~~ 213 (1331)
.....|...|++++| +|+ +..+++|+.||.| +||+++++++..+.. +|..
T Consensus 139 ~~~~~~~~~~~h~~~V~sl~~-----sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~ 212 (902)
T 2oaj_A 139 NLQKSSFFPAARLSPIVSIQW-----NPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTP 212 (902)
T ss_dssp CHHHHHTCSSSCCCCCCEEEE-----ETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCC
T ss_pred CCCCCCCCCCCCCCCEEEEEE-----CCCCCCEEEEEECCCCE-EEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCC
T ss_conf 321000254457897389997-----66999989999189849-998778965799833557767776544332345677
Q ss_pred CHHHHHHHHHCCCCEEEEECCCCCEEEEEECCCCCCC
Q ss_conf 2332467651136479963178735999824677763
Q 000722 214 SISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDS 250 (1331)
Q Consensus 214 ~V~sIawf~~spdg~~LvSgs~DgtIrIWDl~tg~~i 250 (1331)
.|++++ |+|++.+|++++.|++|++||+++++.+
T Consensus 213 ~V~~v~---fspdg~~lasgs~Dg~i~lWd~~~g~~~ 246 (902)
T 2oaj_A 213 KVIQSL---YHPNSLHIITIHEDNSLVFWDANSGHMI 246 (902)
T ss_dssp CEEEEE---ECTTSSEEEEEETTCCEEEEETTTCCEE
T ss_pred CEEEEE---ECCCCCEEEEEECCCEEEEEECCCCCEE
T ss_conf 768999---8599999999989993999987899688
Done!