BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 000725
         (1329 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2F6U|A Chain A, Crystal Structure Of (S)-3-O-Geranylgeranylglyceryl
           Phosphate Synthase Complexed With Citrate
 pdb|2F6U|B Chain B, Crystal Structure Of (S)-3-O-Geranylgeranylglyceryl
           Phosphate Synthase Complexed With Citrate
 pdb|2F6X|A Chain A, Crystal Structure Of (S)-3-O-Geranylgeranylglyceryl
           Phosphate Synthase Complexed With Sn-G1p And Mpd
 pdb|2F6X|B Chain B, Crystal Structure Of (S)-3-O-Geranylgeranylglyceryl
           Phosphate Synthase Complexed With Sn-G1p And Mpd
          Length = 234

 Score = 33.9 bits (76), Expect = 0.57,   Method: Composition-based stats.
 Identities = 43/168 (25%), Positives = 73/168 (43%), Gaps = 12/168 (7%)

Query: 754 QRENFDAARDLLE-VKSCCLPVISKNSTVFCATKDKDFHNSFDPSTLHMKNLKANSGKEL 812
           Q   ++ AR L+E V    LP++ + S       D D+   F P+ L+  +    +GK  
Sbjct: 43  QNVTYEKARTLIEKVSQYGLPIVVEPSDPSNVVYDVDY--LFVPTVLNSADGDWITGKHA 100

Query: 813 D----EQLNFAEFNSSVVSQKQEISGCEYTSSNAKESQVSSDLKLQKNVECINELAGTFD 868
                   N  +F   + S+  +I G  Y   N  +S V+   K   N++   ELA ++ 
Sbjct: 101 QWVRMHYENLQKFTEIIESEFIQIEG--YIVLNP-DSAVARVTKALCNID--KELAASYA 155

Query: 869 LMGCYFFPLPILSVLLSTTGDKIYVCVSCGFLVDKKRTLFIYTVDIQE 916
           L+G   F LPI+ +  S T     +      ++DK R  +   +D +E
Sbjct: 156 LVGEKLFNLPIIYIEYSGTYGNPELVAEVKKVLDKARLFYGGGIDSRE 203


>pdb|1Z3Q|A Chain A, Resolution Of The Structure Of The Allergenic And
           Antifungal Banana Fruit Thaumatin-Like Protein At 1.7a
          Length = 200

 Score = 30.8 bits (68), Expect = 5.8,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 3/47 (6%)

Query: 142 ADINGEAERNLLSSSFCNGASSSKHDNQ---NSGACADPDFQPYLQR 185
           ADING+    L +   CN   +    +Q   NSGAC+  D+  + +R
Sbjct: 123 ADINGQCPGALKAPGGCNNPCTVFKTDQYCCNSGACSPTDYSQFFKR 169


>pdb|3OW2|K Chain K, Crystal Structure Of Enhanced Macrolide Bound To 50s
           Ribosomal Subunit
          Length = 150

 Score = 30.0 bits (66), Expect = 8.7,   Method: Composition-based stats.
 Identities = 11/23 (47%), Positives = 17/23 (73%)

Query: 195 KNEVTNRKPVGRSGFKKPRPANE 217
           K+E  N +P+G+SGFK+P+   E
Sbjct: 37  KHEFHNHEPLGKSGFKRPQKVQE 59


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.315    0.131    0.388 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,569,926
Number of Sequences: 62578
Number of extensions: 1578582
Number of successful extensions: 3786
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 3781
Number of HSP's gapped (non-prelim): 11
length of query: 1329
length of database: 14,973,337
effective HSP length: 110
effective length of query: 1219
effective length of database: 8,089,757
effective search space: 9861413783
effective search space used: 9861413783
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)