BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000725
(1329 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q99973|TEP1_HUMAN Telomerase protein component 1 OS=Homo sapiens GN=TEP1 PE=1 SV=2
Length = 2627
Score = 42.0 bits (97), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 47/201 (23%), Positives = 79/201 (39%), Gaps = 35/201 (17%)
Query: 1074 LVVGHNGFGEFGIWDISKRVLVSRFSAARASIYQFFPINLFSWQRNGSVSMDASLELTNT 1133
L++ + G G+WD + +F ++++ + + SVS D +L++ +
Sbjct: 2120 LLISCSSDGSVGLWDPESGQRLGQFLGHQSAVSAVAAVE----EHVVSVSRDGTLKVWDH 2175
Query: 1134 ATTSLFS--KHSEKSSFCPSVGEDSAIW-----LLVSTISDSDAQHNCMSRDCQKNPVRF 1186
L S HS S C + E A LLV T+ A R
Sbjct: 2176 QGVELTSIPAHSGPISHCAAAMEPRAAGQPGSELLVVTVGLDGA-------------TRL 2222
Query: 1187 WRLALLVKNRVILGSPLDPRASAIGASSGLGIIGTNDGLVYAWELSSGNKLGILHHFKGG 1246
W L+ + +LG RA+A+ +SGL + + DG V W++ K
Sbjct: 2223 WHPLLVCQTHTLLGHSGPVRAAAVSETSGLMLTASEDGSVRLWQVP-----------KEA 2271
Query: 1247 TVSCIATDDSGLQALAVAGDG 1267
+CI + + A+A A DG
Sbjct: 2272 DDTCIPRSSAAVTAVAWAPDG 2292
>sp|B6HDM7|MMM1_PENCW Maintenance of mitochondrial morphology protein 1 OS=Penicillium
chrysogenum (strain ATCC 28089 / DSM 1075 / Wisconsin
54-1255) GN=mmm1 PE=3 SV=1
Length = 495
Score = 37.0 bits (84), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 49/99 (49%), Gaps = 4/99 (4%)
Query: 464 ETSLSMKPSSPVSSLLSSLKLAAAIEKTNGDREEKLQNQDVDLGLDAPIFENSKSFVLDS 523
ET+ S+K SP SS+LSSL A + +K++ D+ LG + PIF N + +D
Sbjct: 148 ETAYSLK-DSPTSSILSSLTAAMNNPEKKPSFIDKIKVTDISLGEEFPIFSNCRIIAVDD 206
Query: 524 FEDDQHRDHITNEVKLS-CNIVEADEPSTDKDINLPSPQ 561
D R +V LS N+ A E T +N P P+
Sbjct: 207 PVSDGGRLQALLDVDLSDDNLSIAVE--TSMLLNYPKPR 243
>sp|P0CK18|CPRT_PMTVS 91 kDa readthrough protein OS=Potato mop-top virus (isolate
Potato/Sweden/Sw) GN=CP-CP2 PE=3 SV=1
Length = 825
Score = 35.8 bits (81), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 62/147 (42%), Gaps = 32/147 (21%)
Query: 763 DLLEVKSCCLPVISKNST---VFCATKD--KDFHNSFDPSTLHMKNLKANSGKELDEQLN 817
D++E K+ L + N+ V D + +F+PS + NL + S LDE N
Sbjct: 434 DIIEAKAVYLVTVLTNAMSGPVVGVDDDERRAVVAAFNPSDCGLPNLDSCS---LDEIKN 490
Query: 818 FAEFNSSVVSQKQEISGCEYTSSNAKESQVSSDLKLQKNVECINELAGTFDLMGCYFFPL 877
F + + V+ + + Q L L +N++C+ E GT +G
Sbjct: 491 F-DLSEVVIGEGTNVE------------QARGYLNLCRNIQCMIETIGTVQFLG------ 531
Query: 878 PILSVLLSTTGDKIYVCVSCGFLVDKK 904
VL S TG + Y C+S F DK+
Sbjct: 532 ----VLSSYTGPQ-YPCISQAFAEDKR 553
>sp|Q86W11|ZSC30_HUMAN Zinc finger and SCAN domain-containing protein 30 OS=Homo sapiens
GN=ZSCAN30 PE=2 SV=1
Length = 494
Score = 35.4 bits (80), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 50/90 (55%), Gaps = 5/90 (5%)
Query: 617 KEVFSKKVQDNFA--NLSKNSTVAEIHPVEKDLKNEPESTEGANDADTRGMNSTVQLSRK 674
+E+F +++ A +LS NS V P+E K E + ++ + D R + V ++++
Sbjct: 142 QEMFWQEMTSTGALKSLSLNSPV---QPLENQCKTETQESQAFQERDGRMVAGKVLMAKQ 198
Query: 675 DIPVKVASDETGSPVQVPHKVYSRKVSKRA 704
+I VAS SP ++P + +S+++++ A
Sbjct: 199 EIVECVASAAMISPGKLPGETHSQRIAEEA 228
>sp|Q3SZK1|AAMP_BOVIN Angio-associated migratory cell protein OS=Bos taurus GN=AAMP PE=2
SV=1
Length = 434
Score = 35.0 bits (79), Expect = 4.4, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 1217 GIIGTNDGLVYAWELSSGNKLGILHHFKG--GTVSCIATDDSG 1257
++G DG + W+L GN + +L +G G ++C+AT+ G
Sbjct: 230 AVVGYEDGTIRIWDLKQGNSIHVLKGTEGHQGPLTCVATNQDG 272
>sp|O04630|SYTM_ARATH Threonine--tRNA ligase, mitochondrial OS=Arabidopsis thaliana
GN=THRRS PE=2 SV=3
Length = 709
Score = 35.0 bits (79), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Query: 421 EAMMTVLLPKAIPLLNNVSRKEKANFRPSETSPIRV-----NLQEGKNETSLSMKPSSPV 475
EA ++ ++PK I L + + N + PI+V N++EGK + M ++ +
Sbjct: 42 EAYLSAVIPKRIKLFEQIQANQLENLKSLPHDPIKVTLPDGNVKEGKKWETTPMDIAAQI 101
Query: 476 SSLLSSLKLAAAIEKTNGDREEKLQ 500
S L++ L +A++ D L+
Sbjct: 102 SKGLANSALISAVDDVLWDMNRPLE 126
>sp|P0CS46|PFS2_CRYNJ Polyadenylation factor subunit 2 OS=Cryptococcus neoformans var.
neoformans serotype D (strain JEC21 / ATCC MYA-565)
GN=PFS2 PE=3 SV=1
Length = 712
Score = 34.7 bits (78), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 33/79 (41%)
Query: 1184 VRFWRLALLVKNRVILGSPLDPRASAIGASSGLGIIGTNDGLVYAWELSSGNKLGILHHF 1243
V+ W + R + G D R + GL + G+ D LV W+ +G L LH
Sbjct: 240 VKIWSYREAKEERSLSGHGWDVRCVDWHPTKGLIVSGSKDMLVKFWDPRTGKDLSTLHSS 299
Query: 1244 KGGTVSCIATDDSGLQALA 1262
K +C + D L A A
Sbjct: 300 KSTINTCRWSPDGHLVATA 318
>sp|P0CS47|PFS2_CRYNB Polyadenylation factor subunit 2 OS=Cryptococcus neoformans var.
neoformans serotype D (strain B-3501A) GN=PFS2 PE=3 SV=1
Length = 713
Score = 34.3 bits (77), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 33/79 (41%)
Query: 1184 VRFWRLALLVKNRVILGSPLDPRASAIGASSGLGIIGTNDGLVYAWELSSGNKLGILHHF 1243
V+ W + R + G D R + GL + G+ D LV W+ +G L LH
Sbjct: 240 VKIWSYREAKEERSLSGHGWDVRCVDWHPTKGLIVSGSKDMLVKFWDPRTGKDLSTLHSS 299
Query: 1244 KGGTVSCIATDDSGLQALA 1262
K +C + D L A A
Sbjct: 300 KSTINTCRWSPDGHLVATA 318
>sp|Q7MR39|YEDY_WOLSU Sulfoxide reductase catalytic subunit YedY OS=Wolinella
succinogenes (strain ATCC 29543 / DSM 1740 / LMG 7466 /
NCTC 11488 / FDC 602W) GN=yedY PE=3 SV=1
Length = 311
Score = 34.3 bits (77), Expect = 7.8, Method: Composition-based stats.
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Query: 747 RSSDYKPQRENFDAARDLLEVKSCCLPVISKNSTVFCATKDKDFHN-SFDPSTLHMKNLK 805
+ SD P +E FD R L++ + + S + A K K SF PS +++NLK
Sbjct: 4 KPSDVTP-KELFDQRRSFLKLGAASVVATGSVSNLLAALKTKAPSPLSFIPSE-NLENLK 61
Query: 806 ANSGKELDEQLNFAEFNSS 824
NS ++ +NF EF++S
Sbjct: 62 PNSFEQASGYVNFYEFSTS 80
>sp|Q6FJ45|AIM24_CANGA Altered inheritance of mitochondria protein 24, mitochondrial
OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM
3761 / NBRC 0622 / NRRL Y-65) GN=AIM24 PE=3 SV=1
Length = 387
Score = 33.9 bits (76), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 57/131 (43%), Gaps = 7/131 (5%)
Query: 736 ETLLASEISQMRSSDYKPQRENFDAARDLLEVKSCCLPVISKNSTVFCA----TKDKDFH 791
++L+A E Q S D KP + RD L S V++ +V D
Sbjct: 142 DSLIAFE--QNDSLDIKPASLSSSLKRDALFSHSHKYQVVTGRGSVLLGGYGDIYSIDLK 199
Query: 792 NSFDPSTLHMKNLKANSGKELDEQLNFAEFNSSVVSQKQEISGCEYTSSNAKESQVSSDL 851
NS D ++ +N+ A SGK E +N E N ++S + E+T SN +E D
Sbjct: 200 NSTDDIVINAQNILAVSGKGQTETMNAIENNPFIISHTAASNIPEFT-SNVQELAAFEDP 258
Query: 852 KLQKNVECINE 862
K Q++ + +
Sbjct: 259 KQQQSQTIVQK 269
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.131 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 507,122,697
Number of Sequences: 539616
Number of extensions: 22460480
Number of successful extensions: 58166
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 87
Number of HSP's that attempted gapping in prelim test: 58055
Number of HSP's gapped (non-prelim): 190
length of query: 1329
length of database: 191,569,459
effective HSP length: 130
effective length of query: 1199
effective length of database: 121,419,379
effective search space: 145581835421
effective search space used: 145581835421
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 68 (30.8 bits)