Query 000725
Match_columns 1329
No_of_seqs 78 out of 80
Neff 2.8
Searched_HMMs 46136
Date Mon Apr 1 22:38:45 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000725.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000725hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0286 G-protein beta subunit 100.0 1.1E-53 2.4E-58 458.1 21.1 241 1004-1276 47-343 (343)
2 KOG0316 Conserved WD40 repeat- 100.0 9.2E-36 2E-40 314.6 20.8 264 947-1271 20-295 (307)
3 KOG0266 WD40 repeat-containing 100.0 3.4E-31 7.4E-36 297.4 24.0 275 945-1291 160-454 (456)
4 KOG0271 Notchless-like WD40 re 100.0 2.8E-29 6E-34 277.2 22.4 268 948-1289 119-479 (480)
5 KOG0272 U4/U6 small nuclear ri 100.0 3.7E-30 7.9E-35 286.2 15.6 262 947-1276 178-458 (459)
6 cd00200 WD40 WD40 domain, foun 100.0 1.6E-27 3.5E-32 224.7 28.6 265 946-1289 11-289 (289)
7 PLN00181 protein SPA1-RELATED; 99.9 7.3E-26 1.6E-30 267.8 28.7 265 947-1290 486-792 (793)
8 KOG0293 WD40 repeat-containing 99.9 2.1E-26 4.5E-31 256.2 21.2 279 942-1293 222-515 (519)
9 KOG0282 mRNA splicing factor [ 99.9 4.5E-27 9.8E-32 264.6 14.9 266 945-1289 215-503 (503)
10 KOG0285 Pleiotropic regulator 99.9 6.9E-25 1.5E-29 241.5 21.7 265 948-1294 155-442 (460)
11 KOG0263 Transcription initiati 99.9 8.3E-24 1.8E-28 247.3 23.0 257 911-1293 358-651 (707)
12 KOG0265 U5 snRNP-specific prot 99.9 1.4E-23 3.1E-28 227.5 21.5 262 946-1264 49-326 (338)
13 cd00200 WD40 WD40 domain, foun 99.9 7.6E-22 1.6E-26 186.4 26.5 269 874-1230 7-289 (289)
14 KOG0319 WD40-repeat-containing 99.9 7.8E-23 1.7E-27 238.2 22.7 286 882-1292 296-620 (775)
15 KOG0272 U4/U6 small nuclear ri 99.9 2.2E-23 4.7E-28 232.6 17.3 278 866-1230 164-458 (459)
16 KOG0279 G protein beta subunit 99.9 1.9E-22 4.1E-27 217.5 22.8 242 1003-1293 6-264 (315)
17 KOG0288 WD40 repeat protein Ti 99.9 1.1E-23 2.4E-28 234.6 13.2 277 946-1289 177-459 (459)
18 KOG0295 WD40 repeat-containing 99.9 3.8E-23 8.2E-28 228.0 17.1 269 947-1289 111-404 (406)
19 KOG0281 Beta-TrCP (transducin 99.9 5E-24 1.1E-28 234.1 9.1 230 985-1312 212-463 (499)
20 KOG0274 Cdc4 and related F-box 99.9 2.8E-22 6.1E-27 232.3 23.6 245 985-1278 223-482 (537)
21 KOG0275 Conserved WD40 repeat- 99.9 4E-23 8.7E-28 225.6 13.8 304 906-1277 184-508 (508)
22 KOG0279 G protein beta subunit 99.9 1.7E-21 3.7E-26 210.2 25.3 296 867-1233 5-314 (315)
23 KOG0291 WD40-repeat-containing 99.9 2.4E-21 5.1E-26 226.4 25.4 297 877-1241 308-621 (893)
24 KOG0266 WD40 repeat-containing 99.9 1E-21 2.2E-26 221.3 20.1 238 1004-1277 150-408 (456)
25 PLN00181 protein SPA1-RELATED; 99.9 7.1E-21 1.5E-25 225.8 24.0 251 986-1277 454-737 (793)
26 KOG1446 Histone H3 (Lys4) meth 99.9 2.3E-20 5E-25 203.2 23.6 272 945-1277 15-302 (311)
27 KOG0283 WD40 repeat-containing 99.9 3.2E-21 6.9E-26 226.9 17.7 234 946-1234 269-578 (712)
28 KOG0271 Notchless-like WD40 re 99.8 1.3E-20 2.8E-25 209.2 17.0 285 1006-1322 109-451 (480)
29 KOG0291 WD40-repeat-containing 99.8 2.4E-19 5.3E-24 209.8 26.9 336 904-1302 116-542 (893)
30 KOG0313 Microtubule binding pr 99.8 5.2E-20 1.1E-24 204.2 19.6 268 947-1293 108-420 (423)
31 KOG0284 Polyadenylation factor 99.8 1.6E-20 3.5E-25 209.4 14.1 275 947-1302 99-395 (464)
32 KOG0276 Vesicle coat complex C 99.8 1.2E-19 2.6E-24 209.4 21.5 265 948-1274 17-297 (794)
33 KOG0286 G-protein beta subunit 99.8 1.1E-19 2.3E-24 197.3 19.6 221 949-1229 102-342 (343)
34 PTZ00421 coronin; Provisional 99.8 1.6E-19 3.5E-24 207.3 22.2 224 947-1256 78-314 (493)
35 KOG0274 Cdc4 and related F-box 99.8 7.8E-20 1.7E-24 212.2 17.9 231 1012-1303 209-452 (537)
36 KOG0292 Vesicle coat complex C 99.8 3.7E-19 8.1E-24 210.3 19.9 257 948-1265 13-311 (1202)
37 KOG0315 G-protein beta subunit 99.8 8.7E-19 1.9E-23 187.7 20.2 269 927-1254 20-309 (311)
38 KOG0263 Transcription initiati 99.8 2.3E-19 5E-24 210.5 16.5 185 948-1175 455-649 (707)
39 PTZ00421 coronin; Provisional 99.8 2.9E-18 6.3E-23 197.1 25.0 221 985-1278 37-290 (493)
40 KOG0281 Beta-TrCP (transducin 99.8 2E-19 4.3E-24 198.3 14.7 228 948-1296 239-482 (499)
41 KOG0273 Beta-transducin family 99.8 1.5E-18 3.2E-23 196.3 22.0 250 930-1264 219-512 (524)
42 TIGR03866 PQQ_ABC_repeats PQQ- 99.8 2.3E-17 5.1E-22 164.6 28.1 250 985-1264 6-266 (300)
43 KOG0265 U5 snRNP-specific prot 99.8 1.3E-18 2.9E-23 189.3 17.8 259 896-1231 60-337 (338)
44 PTZ00420 coronin; Provisional 99.8 5.2E-18 1.1E-22 198.3 22.7 249 985-1257 49-318 (568)
45 KOG0295 WD40 repeat-containing 99.8 2.4E-18 5.1E-23 190.6 16.4 263 1003-1306 99-378 (406)
46 KOG0319 WD40-repeat-containing 99.8 2.8E-17 6.1E-22 192.5 22.6 323 875-1277 146-576 (775)
47 KOG0315 G-protein beta subunit 99.8 7.2E-17 1.6E-21 173.2 23.2 257 985-1289 15-297 (311)
48 KOG0296 Angio-associated migra 99.8 1.1E-16 2.4E-21 177.5 23.8 269 946-1276 66-396 (399)
49 KOG0318 WD40 repeat stress pro 99.7 3.6E-16 7.8E-21 178.8 24.3 273 944-1277 59-391 (603)
50 KOG0318 WD40 repeat stress pro 99.7 9.2E-16 2E-20 175.6 26.9 273 948-1293 194-519 (603)
51 TIGR03866 PQQ_ABC_repeats PQQ- 99.7 1.8E-15 3.9E-20 151.2 25.8 250 948-1254 34-299 (300)
52 KOG0299 U3 snoRNP-associated p 99.7 1.3E-16 2.7E-21 180.4 18.9 236 945-1294 143-413 (479)
53 KOG0301 Phospholipase A2-activ 99.7 1.6E-16 3.5E-21 185.4 20.0 232 1003-1276 5-247 (745)
54 KOG0308 Conserved WD40 repeat- 99.7 2.3E-17 4.9E-22 191.5 12.1 269 985-1306 42-340 (735)
55 KOG0277 Peroxisomal targeting 99.7 6E-17 1.3E-21 174.1 13.9 216 985-1277 78-308 (311)
56 KOG0276 Vesicle coat complex C 99.7 1.1E-16 2.5E-21 185.2 15.3 229 1005-1277 6-256 (794)
57 KOG0321 WD40 repeat-containing 99.7 8.8E-17 1.9E-21 186.4 14.1 240 985-1293 117-393 (720)
58 KOG0645 WD40 repeat protein [G 99.7 1.6E-15 3.4E-20 164.2 22.4 228 1002-1274 4-257 (312)
59 KOG0278 Serine/threonine kinas 99.7 4.6E-17 1E-21 174.8 10.4 269 953-1299 26-310 (334)
60 PTZ00420 coronin; Provisional 99.7 1.3E-15 2.7E-20 178.6 23.2 217 1028-1278 50-293 (568)
61 KOG0294 WD40 repeat-containing 99.7 5.1E-16 1.1E-20 170.3 18.4 246 1003-1300 34-296 (362)
62 KOG0316 Conserved WD40 repeat- 99.7 6.7E-16 1.4E-20 165.1 18.1 236 1005-1292 10-258 (307)
63 KOG0264 Nucleosome remodeling 99.7 1.5E-15 3.3E-20 171.2 20.5 205 946-1294 179-407 (422)
64 KOG1036 Mitotic spindle checkp 99.7 1.8E-15 3.8E-20 165.5 19.1 265 946-1266 15-294 (323)
65 KOG0645 WD40 repeat protein [G 99.7 4.1E-15 8.8E-20 161.0 21.5 232 948-1233 65-312 (312)
66 COG2319 FOG: WD40 repeat [Gene 99.7 2.8E-13 6.1E-18 131.7 32.0 260 985-1300 128-409 (466)
67 KOG0273 Beta-transducin family 99.7 2.3E-15 5E-20 170.8 20.2 279 946-1278 180-482 (524)
68 KOG0288 WD40 repeat protein Ti 99.7 3E-16 6.5E-21 175.9 11.2 227 947-1229 222-458 (459)
69 KOG0646 WD40 repeat protein [G 99.7 1.7E-15 3.6E-20 171.6 16.5 233 947-1264 84-337 (476)
70 KOG0305 Anaphase promoting com 99.6 4E-15 8.7E-20 171.4 18.8 231 945-1277 218-460 (484)
71 KOG0268 Sof1-like rRNA process 99.6 2.4E-15 5.2E-20 167.1 16.2 252 985-1297 84-353 (433)
72 KOG0285 Pleiotropic regulator 99.6 2.7E-15 5.9E-20 166.6 16.0 197 1006-1279 145-349 (460)
73 COG2319 FOG: WD40 repeat [Gene 99.6 9.5E-13 2.1E-17 128.1 30.0 289 943-1293 64-372 (466)
74 KOG0284 Polyadenylation factor 99.6 2E-15 4.4E-20 169.3 13.2 235 946-1243 140-392 (464)
75 KOG0283 WD40 repeat-containing 99.6 7.2E-15 1.6E-19 174.0 17.1 251 1004-1292 258-577 (712)
76 KOG0282 mRNA splicing factor [ 99.6 6.3E-15 1.4E-19 167.6 13.7 237 1003-1276 205-460 (503)
77 KOG0292 Vesicle coat complex C 99.6 2.2E-14 4.8E-19 170.7 18.5 272 948-1265 55-384 (1202)
78 KOG0306 WD40-repeat-containing 99.6 3.3E-14 7.1E-19 167.5 19.4 255 987-1276 341-620 (888)
79 KOG1407 WD40 repeat protein [F 99.6 1.1E-13 2.4E-18 149.7 21.4 276 944-1290 20-310 (313)
80 KOG0310 Conserved WD40 repeat- 99.6 3.4E-14 7.3E-19 161.8 18.2 242 990-1275 48-306 (487)
81 KOG0308 Conserved WD40 repeat- 99.6 2E-14 4.2E-19 167.6 14.6 252 985-1241 90-402 (735)
82 KOG0310 Conserved WD40 repeat- 99.6 2.8E-14 6.1E-19 162.4 15.4 232 947-1237 71-314 (487)
83 KOG0301 Phospholipase A2-activ 99.6 1E-13 2.2E-18 162.5 19.5 252 982-1293 27-290 (745)
84 KOG0300 WD40 repeat-containing 99.6 6.5E-14 1.4E-18 154.1 16.5 248 991-1293 124-430 (481)
85 KOG0277 Peroxisomal targeting 99.6 8.7E-14 1.9E-18 150.1 17.0 214 989-1277 37-264 (311)
86 KOG0306 WD40-repeat-containing 99.5 2.4E-13 5.2E-18 160.4 21.3 268 946-1294 375-667 (888)
87 PF05965 FYRC: F/Y rich C-term 99.5 2.2E-15 4.7E-20 137.3 3.0 69 74-143 2-74 (86)
88 KOG4378 Nuclear protein COP1 [ 99.5 6.7E-14 1.5E-18 159.8 13.9 237 985-1257 52-305 (673)
89 KOG0267 Microtubule severing p 99.5 3.6E-14 7.9E-19 166.7 11.0 256 1006-1302 22-305 (825)
90 smart00542 FYRC "FY-rich" doma 99.5 1.3E-14 2.7E-19 133.9 5.3 67 77-144 1-71 (86)
91 KOG0643 Translation initiation 99.5 1.1E-12 2.5E-17 142.3 20.8 273 948-1294 14-320 (327)
92 KOG0313 Microtubule binding pr 99.5 2.8E-13 6.1E-18 151.4 15.8 257 987-1281 80-379 (423)
93 KOG1273 WD40 repeat protein [G 99.5 6.4E-13 1.4E-17 146.5 18.1 237 947-1264 26-311 (405)
94 KOG0646 WD40 repeat protein [G 99.5 2.2E-13 4.7E-18 154.8 14.9 268 981-1287 9-314 (476)
95 KOG0307 Vesicle coat complex C 99.5 1.4E-13 3.1E-18 167.2 14.1 289 945-1291 6-327 (1049)
96 KOG0640 mRNA cleavage stimulat 99.5 6.1E-13 1.3E-17 146.4 17.5 266 949-1264 117-414 (430)
97 KOG0293 WD40 repeat-containing 99.5 3.6E-13 7.7E-18 151.8 14.7 237 1005-1291 217-470 (519)
98 KOG0278 Serine/threonine kinas 99.5 7.4E-14 1.6E-18 150.5 7.8 214 985-1238 76-303 (334)
99 KOG0294 WD40 repeat-containing 99.5 2.9E-12 6.3E-17 141.3 19.9 233 985-1256 58-308 (362)
100 KOG0973 Histone transcription 99.5 2.2E-12 4.7E-17 156.5 20.5 291 947-1293 16-357 (942)
101 KOG0270 WD40 repeat-containing 99.5 3E-12 6.5E-17 145.2 20.2 289 892-1295 137-453 (463)
102 KOG0300 WD40 repeat-containing 99.4 6.6E-13 1.4E-17 146.4 13.9 263 985-1291 165-476 (481)
103 KOG2445 Nuclear pore complex c 99.4 4E-12 8.6E-17 140.0 19.9 248 1009-1293 10-320 (361)
104 KOG0647 mRNA export protein (c 99.4 3.6E-12 7.9E-17 140.0 19.0 273 946-1265 29-312 (347)
105 KOG0289 mRNA splicing factor [ 99.4 5.8E-12 1.3E-16 142.8 20.3 252 985-1274 236-502 (506)
106 KOG1446 Histone H3 (Lys4) meth 99.4 1.2E-11 2.7E-16 135.9 22.0 255 1012-1309 15-290 (311)
107 KOG1274 WD40 repeat protein [G 99.4 8.2E-12 1.8E-16 149.9 22.4 259 947-1275 16-297 (933)
108 KOG0296 Angio-associated migra 99.4 5.9E-12 1.3E-16 140.5 19.4 276 868-1232 56-398 (399)
109 KOG0275 Conserved WD40 repeat- 99.4 5.4E-13 1.2E-17 147.3 10.6 188 1012-1264 214-411 (508)
110 KOG0772 Uncharacterized conser 99.4 1.2E-11 2.5E-16 142.4 21.1 284 944-1275 167-484 (641)
111 KOG0289 mRNA splicing factor [ 99.4 2.6E-12 5.7E-17 145.5 15.1 220 1004-1292 192-420 (506)
112 KOG2919 Guanine nucleotide-bin 99.4 4.1E-12 8.8E-17 140.6 16.1 261 948-1265 53-359 (406)
113 KOG0639 Transducin-like enhanc 99.4 5.8E-12 1.3E-16 144.4 16.2 244 987-1264 437-692 (705)
114 KOG0973 Histone transcription 99.4 6.6E-12 1.4E-16 152.3 17.6 235 946-1234 71-357 (942)
115 PRK11028 6-phosphogluconolacto 99.4 1.7E-10 3.7E-15 122.9 26.1 271 986-1293 8-306 (330)
116 KOG0267 Microtubule severing p 99.4 1E-12 2.2E-17 154.7 8.9 212 1057-1315 26-263 (825)
117 KOG1538 Uncharacterized conser 99.4 8.9E-12 1.9E-16 145.8 16.2 244 948-1264 16-281 (1081)
118 KOG0642 Cell-cycle nuclear pro 99.4 6.4E-12 1.4E-16 145.4 14.2 239 985-1301 311-570 (577)
119 KOG0299 U3 snoRNP-associated p 99.3 4.8E-11 1E-15 136.0 20.2 316 846-1263 112-443 (479)
120 KOG0641 WD40 repeat protein [G 99.3 3.4E-11 7.3E-16 129.1 17.5 288 852-1174 18-348 (350)
121 KOG1408 WD40 repeat protein [F 99.3 2.4E-11 5.2E-16 143.1 16.8 307 946-1302 80-545 (1080)
122 KOG0305 Anaphase promoting com 99.3 7E-11 1.5E-15 137.0 19.7 216 987-1277 194-418 (484)
123 KOG0643 Translation initiation 99.3 9.9E-11 2.1E-15 127.6 19.1 233 1007-1301 5-241 (327)
124 KOG0269 WD40 repeat-containing 99.3 4.4E-12 9.6E-17 150.3 9.3 184 985-1184 105-310 (839)
125 KOG0269 WD40 repeat-containing 99.3 1.2E-11 2.6E-16 146.7 12.6 237 1005-1276 35-294 (839)
126 KOG0270 WD40 repeat-containing 99.3 3.1E-11 6.7E-16 137.1 15.2 268 918-1294 110-407 (463)
127 KOG0640 mRNA cleavage stimulat 99.3 2E-11 4.3E-16 134.8 13.0 183 1067-1293 119-337 (430)
128 PRK11028 6-phosphogluconolacto 99.3 5.7E-10 1.2E-14 119.0 23.4 268 902-1232 9-304 (330)
129 KOG1407 WD40 repeat protein [F 99.3 5.3E-11 1.1E-15 129.3 15.6 225 1006-1264 14-249 (313)
130 KOG1539 WD repeat protein [Gen 99.3 4.5E-10 9.7E-15 134.5 24.4 269 985-1292 177-524 (910)
131 KOG0647 mRNA export protein (c 99.3 1.1E-10 2.4E-15 128.6 17.5 252 1011-1303 27-306 (347)
132 KOG0650 WD40 repeat nucleolar 99.3 2E-10 4.3E-15 134.1 20.5 269 947-1288 403-732 (733)
133 KOG1408 WD40 repeat protein [F 99.3 1.8E-10 3.9E-15 136.0 19.8 314 903-1292 344-714 (1080)
134 KOG0268 Sof1-like rRNA process 99.3 1.1E-11 2.3E-16 138.6 9.1 232 1004-1280 58-304 (433)
135 KOG1332 Vesicle coat complex C 99.2 3.7E-11 8.1E-16 129.7 11.4 196 1067-1293 18-243 (299)
136 KOG0264 Nucleosome remodeling 99.2 6.3E-10 1.4E-14 126.6 20.9 200 1012-1277 125-346 (422)
137 KOG2055 WD40 repeat protein [G 99.2 2.3E-10 5E-15 130.8 17.2 240 945-1231 214-511 (514)
138 KOG2096 WD40 repeat protein [G 99.2 4.6E-10 9.9E-15 124.6 17.7 299 928-1288 75-412 (420)
139 KOG2096 WD40 repeat protein [G 99.2 2.7E-10 5.8E-15 126.4 15.4 213 1004-1292 78-309 (420)
140 KOG0641 WD40 repeat protein [G 99.2 4.2E-09 9.1E-14 113.3 23.5 279 944-1291 32-349 (350)
141 KOG1009 Chromatin assembly com 99.2 1.1E-09 2.3E-14 124.1 19.8 264 985-1264 31-360 (434)
142 KOG1332 Vesicle coat complex C 99.2 3E-10 6.4E-15 122.9 14.5 243 1005-1290 3-285 (299)
143 KOG2048 WD40 repeat protein [G 99.1 5.5E-09 1.2E-13 123.4 23.7 285 946-1276 112-503 (691)
144 KOG1334 WD40 repeat protein [G 99.1 4.5E-10 9.8E-15 129.1 13.0 259 1003-1289 133-464 (559)
145 KOG1034 Transcriptional repres 99.1 1.5E-09 3.2E-14 120.9 15.9 246 985-1265 110-373 (385)
146 KOG0644 Uncharacterized conser 99.1 8.8E-11 1.9E-15 140.2 5.9 260 971-1277 159-425 (1113)
147 KOG4283 Transcription-coupled 99.1 5.1E-09 1.1E-13 115.7 18.5 245 985-1257 61-347 (397)
148 KOG0302 Ribosome Assembly prot 99.1 1.5E-09 3.2E-14 122.3 14.6 203 1012-1293 152-380 (440)
149 KOG2106 Uncharacterized conser 99.1 2.8E-08 6E-13 115.1 24.1 276 983-1293 173-479 (626)
150 PF05964 FYRN: F/Y-rich N-term 99.0 2.1E-10 4.4E-15 98.6 5.2 47 18-71 1-54 (54)
151 KOG1036 Mitotic spindle checkp 99.0 7.8E-09 1.7E-13 114.3 18.7 230 1012-1292 14-263 (323)
152 KOG4378 Nuclear protein COP1 [ 99.0 1.4E-09 3E-14 125.4 12.6 203 985-1205 96-321 (673)
153 KOG0302 Ribosome Assembly prot 99.0 2.5E-09 5.4E-14 120.5 13.9 197 895-1127 166-379 (440)
154 KOG1539 WD repeat protein [Gen 99.0 7.8E-09 1.7E-13 124.1 18.8 375 868-1298 235-676 (910)
155 KOG0639 Transducin-like enhanc 99.0 1.7E-09 3.8E-14 124.6 12.8 286 853-1231 406-703 (705)
156 KOG2048 WD40 repeat protein [G 99.0 1.8E-08 3.8E-13 119.2 20.9 225 1012-1265 26-264 (691)
157 KOG4283 Transcription-coupled 99.0 6E-09 1.3E-13 115.1 15.4 175 1014-1302 46-233 (397)
158 PRK01742 tolB translocation pr 99.0 1.2E-08 2.7E-13 114.6 18.3 264 931-1256 144-426 (429)
159 KOG2106 Uncharacterized conser 99.0 1.6E-08 3.4E-13 117.1 18.9 234 948-1236 250-525 (626)
160 KOG4328 WD40 protein [Function 99.0 2.4E-08 5.2E-13 114.6 19.5 267 947-1265 189-483 (498)
161 KOG0772 Uncharacterized conser 99.0 3.3E-09 7.2E-14 122.7 11.7 209 1057-1290 165-405 (641)
162 KOG0321 WD40 repeat-containing 98.9 9.6E-09 2.1E-13 121.0 14.7 241 1025-1277 67-346 (720)
163 KOG0650 WD40 repeat nucleolar 98.9 5.5E-09 1.2E-13 122.4 12.1 231 1007-1264 395-668 (733)
164 KOG0303 Actin-binding protein 98.9 1E-08 2.2E-13 116.2 13.7 202 919-1175 72-294 (472)
165 KOG1188 WD40 repeat protein [G 98.9 1.3E-08 2.9E-13 113.7 13.4 269 986-1295 46-350 (376)
166 KOG1517 Guanine nucleotide bin 98.9 4E-08 8.7E-13 120.3 18.3 265 985-1293 1081-1383(1387)
167 KOG2445 Nuclear pore complex c 98.8 1.4E-07 2.9E-12 105.0 19.1 229 948-1232 17-318 (361)
168 KOG1034 Transcriptional repres 98.8 3.6E-08 7.7E-13 110.1 14.2 262 903-1233 88-384 (385)
169 KOG1310 WD40 repeat protein [G 98.8 1.6E-08 3.5E-13 117.7 11.9 226 1002-1240 40-311 (758)
170 KOG0649 WD40 repeat protein [G 98.8 3E-07 6.4E-12 100.3 20.1 229 950-1232 16-274 (325)
171 KOG1063 RNA polymerase II elon 98.8 1.1E-07 2.4E-12 113.0 17.8 262 985-1292 211-561 (764)
172 KOG4227 WD40 repeat protein [G 98.8 1.9E-07 4E-12 106.1 18.0 272 948-1277 60-386 (609)
173 KOG1063 RNA polymerase II elon 98.8 5.4E-07 1.2E-11 107.3 21.4 293 985-1306 74-422 (764)
174 KOG4328 WD40 protein [Function 98.7 1.1E-07 2.4E-12 109.3 14.6 204 1058-1302 185-416 (498)
175 KOG1587 Cytoplasmic dynein int 98.7 6.3E-07 1.4E-11 106.3 20.2 258 991-1307 223-513 (555)
176 KOG0322 G-protein beta subunit 98.6 2.1E-07 4.6E-12 102.1 12.5 240 1006-1290 8-322 (323)
177 PRK01742 tolB translocation pr 98.6 4.5E-07 9.7E-12 102.3 14.9 186 948-1175 207-401 (429)
178 KOG1273 WD40 repeat protein [G 98.6 8.9E-07 1.9E-11 99.0 16.1 205 1012-1296 24-231 (405)
179 KOG1188 WD40 repeat protein [G 98.6 4.4E-07 9.6E-12 101.9 13.1 226 985-1231 89-345 (376)
180 KOG2919 Guanine nucleotide-bin 98.6 4.8E-07 1E-11 101.3 13.2 239 1014-1292 52-328 (406)
181 KOG0771 Prolactin regulatory e 98.6 4.7E-07 1E-11 103.2 13.4 216 1003-1293 136-356 (398)
182 PRK03629 tolB translocation pr 98.6 4E-06 8.8E-11 95.1 20.6 264 931-1255 139-427 (429)
183 KOG2055 WD40 repeat protein [G 98.6 2.8E-06 6.1E-11 98.2 19.4 268 990-1296 199-496 (514)
184 PF08662 eIF2A: Eukaryotic tra 98.6 1.3E-06 2.8E-11 90.0 14.6 140 947-1112 8-155 (194)
185 KOG0290 Conserved WD40 repeat- 98.5 2.6E-06 5.5E-11 94.8 16.9 283 930-1266 30-356 (364)
186 KOG0303 Actin-binding protein 98.5 1.3E-06 2.8E-11 99.6 15.0 214 997-1275 65-291 (472)
187 KOG1240 Protein kinase contain 98.5 5E-06 1.1E-10 103.8 21.0 222 995-1243 1034-1284(1431)
188 KOG1274 WD40 repeat protein [G 98.5 1.5E-06 3.3E-11 105.9 15.0 162 943-1131 95-267 (933)
189 KOG1445 Tumor-specific antigen 98.5 6.6E-07 1.4E-11 105.8 11.4 254 988-1264 601-879 (1012)
190 KOG1272 WD40-repeat-containing 98.5 4.6E-07 1E-11 104.6 9.5 273 891-1295 85-366 (545)
191 PF02239 Cytochrom_D1: Cytochr 98.5 5.4E-05 1.2E-09 85.7 25.5 277 948-1264 40-334 (369)
192 KOG0771 Prolactin regulatory e 98.4 1.2E-06 2.5E-11 100.1 11.8 204 862-1112 81-336 (398)
193 PRK04922 tolB translocation pr 98.4 5.4E-06 1.2E-10 93.7 16.8 225 989-1254 183-431 (433)
194 KOG1009 Chromatin assembly com 98.4 5.1E-06 1.1E-10 95.1 16.2 177 872-1096 9-201 (434)
195 KOG0290 Conserved WD40 repeat- 98.4 5.4E-06 1.2E-10 92.3 15.6 192 862-1091 82-319 (364)
196 KOG0974 WD-repeat protein WDR6 98.4 2.1E-05 4.5E-10 97.2 21.6 112 948-1094 179-292 (967)
197 KOG3881 Uncharacterized conser 98.4 6.8E-06 1.5E-10 93.7 16.1 188 986-1292 121-321 (412)
198 PF10282 Lactonase: Lactonase, 98.4 0.00015 3.2E-09 80.2 25.8 267 947-1252 39-344 (345)
199 KOG1007 WD repeat protein TSSC 98.4 3.6E-06 7.7E-11 93.6 13.1 212 946-1219 125-358 (370)
200 KOG0644 Uncharacterized conser 98.4 1.2E-06 2.6E-11 106.0 10.1 175 854-1090 113-300 (1113)
201 TIGR03300 assembly_YfgL outer 98.3 8.6E-05 1.9E-09 81.5 22.5 252 986-1277 71-337 (377)
202 KOG0307 Vesicle coat complex C 98.3 1.1E-06 2.4E-11 108.6 8.7 269 935-1238 31-333 (1049)
203 KOG0322 G-protein beta subunit 98.3 6.2E-06 1.3E-10 91.0 12.7 221 985-1231 30-322 (323)
204 KOG2110 Uncharacterized conser 98.3 2.8E-05 6.1E-10 88.4 17.9 219 985-1245 102-345 (391)
205 PRK04922 tolB translocation pr 98.3 3.6E-05 7.9E-10 87.1 18.8 198 1032-1264 184-397 (433)
206 KOG0649 WD40 repeat protein [G 98.3 4.2E-06 9.1E-11 91.6 10.7 111 985-1104 77-200 (325)
207 KOG2394 WD40 protein DMR-N9 [G 98.2 2.4E-06 5.3E-11 100.1 8.3 75 947-1047 293-369 (636)
208 KOG2110 Uncharacterized conser 98.2 0.00012 2.7E-09 83.4 21.3 239 870-1178 81-333 (391)
209 KOG1007 WD repeat protein TSSC 98.2 4.3E-05 9.3E-10 85.3 17.3 259 988-1292 38-362 (370)
210 TIGR03300 assembly_YfgL outer 98.2 0.00018 3.9E-09 79.0 22.1 239 985-1264 110-367 (377)
211 KOG4227 WD40 repeat protein [G 98.2 1.6E-05 3.6E-10 90.8 13.8 209 1007-1238 51-280 (609)
212 KOG1963 WD40 repeat protein [G 98.2 5E-05 1.1E-09 92.7 18.3 269 948-1290 20-321 (792)
213 KOG1517 Guanine nucleotide bin 98.2 2.3E-05 5E-10 97.2 15.0 269 989-1301 1049-1343(1387)
214 smart00541 FYRN "FY-rich" doma 98.2 1.3E-06 2.9E-11 73.2 3.3 33 34-70 4-43 (44)
215 PF02239 Cytochrom_D1: Cytochr 98.2 0.00011 2.5E-09 83.1 19.5 260 985-1293 11-304 (369)
216 PRK05137 tolB translocation pr 98.2 0.00015 3.2E-09 82.1 20.4 214 989-1241 181-420 (435)
217 PF08662 eIF2A: Eukaryotic tra 98.1 2E-05 4.3E-10 81.4 11.6 119 1143-1295 62-183 (194)
218 PRK03629 tolB translocation pr 98.1 0.00021 4.6E-09 81.5 20.5 181 875-1112 197-385 (429)
219 PRK04792 tolB translocation pr 98.1 0.00013 2.7E-09 83.9 18.8 115 948-1094 221-342 (448)
220 TIGR02800 propeller_TolB tol-p 98.1 6.9E-05 1.5E-09 82.4 15.5 177 949-1167 194-386 (417)
221 KOG1310 WD40 repeat protein [G 98.0 1.1E-05 2.5E-10 94.8 8.0 137 1039-1279 32-179 (758)
222 KOG1587 Cytoplasmic dynein int 98.0 0.00018 3.9E-09 86.1 17.8 228 985-1234 260-518 (555)
223 PRK05137 tolB translocation pr 98.0 0.0003 6.4E-09 79.8 18.6 195 1032-1264 182-394 (435)
224 PRK02889 tolB translocation pr 98.0 0.00028 6E-09 80.2 18.1 225 989-1254 175-423 (427)
225 TIGR02800 propeller_TolB tol-p 98.0 0.00084 1.8E-08 74.0 20.8 217 989-1245 169-409 (417)
226 PF10282 Lactonase: Lactonase, 98.0 0.0091 2E-07 66.3 28.8 280 987-1298 10-329 (345)
227 KOG2394 WD40 protein DMR-N9 [G 97.9 0.00019 4.1E-09 84.9 16.3 47 1208-1255 338-384 (636)
228 KOG0974 WD-repeat protein WDR6 97.9 6.9E-05 1.5E-09 92.8 12.7 171 986-1175 105-288 (967)
229 PLN02919 haloacid dehalogenase 97.9 0.0025 5.4E-08 81.2 26.5 263 948-1277 571-887 (1057)
230 PRK02889 tolB translocation pr 97.9 0.00064 1.4E-08 77.4 19.3 177 1061-1265 197-389 (427)
231 PRK00178 tolB translocation pr 97.9 0.00034 7.3E-09 78.5 16.0 177 948-1165 202-393 (430)
232 PF13360 PQQ_2: PQQ-like domai 97.9 0.0012 2.5E-08 66.8 18.1 194 985-1237 41-235 (238)
233 KOG0642 Cell-cycle nuclear pro 97.8 6.1E-05 1.3E-09 89.0 10.0 219 860-1126 327-561 (577)
234 PRK00178 tolB translocation pr 97.8 0.0011 2.4E-08 74.4 19.3 216 990-1245 179-418 (430)
235 KOG3914 WD repeat protein WDR4 97.8 8.5E-05 1.8E-09 85.1 10.1 108 985-1103 127-236 (390)
236 KOG1524 WD40 repeat-containing 97.8 0.00012 2.6E-09 86.5 11.4 165 948-1167 108-278 (737)
237 PF00400 WD40: WD domain, G-be 97.8 7.6E-05 1.6E-09 57.3 6.2 36 1003-1038 2-39 (39)
238 TIGR02658 TTQ_MADH_Hv methylam 97.7 0.012 2.6E-07 67.5 26.0 248 990-1259 27-313 (352)
239 KOG1240 Protein kinase contain 97.7 0.00044 9.5E-09 87.3 15.2 216 1058-1289 1047-1283(1431)
240 KOG4497 Uncharacterized conser 97.7 0.00027 5.8E-09 80.2 11.2 207 950-1233 14-241 (447)
241 KOG1523 Actin-related protein 97.7 0.0016 3.5E-08 73.8 17.0 216 947-1240 13-245 (361)
242 KOG4547 WD40 repeat-containing 97.6 0.00059 1.3E-08 81.1 13.1 162 1068-1254 1-193 (541)
243 PF00400 WD40: WD domain, G-be 97.6 0.00012 2.5E-09 56.3 4.9 39 1234-1289 1-39 (39)
244 PLN02919 haloacid dehalogenase 97.6 0.0057 1.2E-07 78.1 22.5 236 947-1236 626-892 (1057)
245 KOG4547 WD40 repeat-containing 97.5 0.001 2.2E-08 79.2 14.0 109 988-1108 78-190 (541)
246 KOG1963 WD40 repeat protein [G 97.5 0.0096 2.1E-07 73.6 22.4 165 881-1101 165-336 (792)
247 KOG2111 Uncharacterized conser 97.5 0.0094 2E-07 67.8 19.5 229 957-1231 59-321 (346)
248 KOG0280 Uncharacterized conser 97.4 0.00062 1.4E-08 76.4 10.1 101 985-1090 138-241 (339)
249 TIGR02658 TTQ_MADH_Hv methylam 97.4 0.019 4.1E-07 65.9 21.4 246 949-1241 51-339 (352)
250 PF13360 PQQ_2: PQQ-like domai 97.2 0.042 9.1E-07 55.7 19.7 99 988-1098 1-102 (238)
251 KOG2321 WD40 repeat protein [G 97.2 0.012 2.7E-07 70.6 18.2 234 947-1229 54-340 (703)
252 KOG1272 WD40-repeat-containing 97.1 0.00067 1.4E-08 79.4 6.3 181 1067-1291 136-323 (545)
253 KOG1445 Tumor-specific antigen 97.1 0.0013 2.8E-08 79.1 8.4 189 948-1175 631-844 (1012)
254 KOG1409 Uncharacterized conser 97.1 0.0021 4.6E-08 73.4 9.3 224 1003-1292 15-271 (404)
255 PRK11138 outer membrane biogen 97.0 0.065 1.4E-06 60.3 20.7 222 986-1245 126-366 (394)
256 KOG0309 Conserved WD40 repeat- 97.0 0.0011 2.4E-08 80.8 6.5 216 1008-1293 110-341 (1081)
257 PRK11138 outer membrane biogen 96.9 0.093 2E-06 59.1 20.9 231 1020-1291 118-362 (394)
258 KOG1538 Uncharacterized conser 96.9 0.025 5.4E-07 69.0 16.5 188 1010-1275 11-208 (1081)
259 KOG2321 WD40 repeat protein [G 96.8 0.017 3.8E-07 69.5 14.1 289 846-1171 31-337 (703)
260 KOG2139 WD40 repeat protein [G 96.8 0.031 6.8E-07 64.7 15.4 194 984-1191 114-328 (445)
261 KOG4532 WD40-like repeat conta 96.8 0.013 2.9E-07 65.7 12.1 138 983-1131 131-287 (344)
262 PRK01029 tolB translocation pr 96.8 0.098 2.1E-06 60.6 19.5 226 990-1254 165-423 (428)
263 KOG2315 Predicted translation 96.7 0.16 3.5E-06 61.2 20.9 294 948-1295 38-394 (566)
264 KOG2314 Translation initiation 96.7 0.016 3.4E-07 69.6 12.5 312 947-1311 213-590 (698)
265 KOG2111 Uncharacterized conser 96.6 0.03 6.5E-07 63.9 13.8 157 930-1094 78-260 (346)
266 PRK01029 tolB translocation pr 96.6 0.051 1.1E-06 62.9 15.8 178 949-1165 189-390 (428)
267 KOG4190 Uncharacterized conser 96.6 0.0069 1.5E-07 72.3 8.9 120 985-1112 752-888 (1034)
268 PRK04792 tolB translocation pr 96.6 0.23 5E-06 57.8 21.0 175 1061-1264 219-410 (448)
269 KOG3914 WD repeat protein WDR4 96.6 0.0051 1.1E-07 71.1 7.5 84 924-1049 147-232 (390)
270 KOG1524 WD40 repeat-containing 96.3 0.039 8.6E-07 66.2 13.0 225 1012-1278 15-255 (737)
271 KOG4190 Uncharacterized conser 96.3 0.0055 1.2E-07 73.0 6.0 218 1005-1287 728-954 (1034)
272 KOG1334 WD40 repeat protein [G 96.2 0.012 2.5E-07 69.8 8.0 165 1057-1278 140-312 (559)
273 KOG3881 Uncharacterized conser 96.1 0.029 6.3E-07 65.2 9.9 128 937-1096 195-326 (412)
274 PF08450 SGL: SMP-30/Gluconola 96.0 2.5 5.5E-05 44.4 25.0 211 985-1254 17-233 (246)
275 KOG2315 Predicted translation 96.0 0.1 2.2E-06 63.0 14.0 157 949-1130 222-394 (566)
276 smart00320 WD40 WD40 repeats. 95.8 0.024 5.3E-07 38.6 5.2 35 1004-1038 4-40 (40)
277 KOG1354 Serine/threonine prote 95.8 0.023 4.9E-07 65.5 7.6 182 899-1103 102-315 (433)
278 KOG1064 RAVE (regulator of V-A 95.8 0.018 3.9E-07 75.8 7.6 139 985-1131 2225-2403(2439)
279 KOG1275 PAB-dependent poly(A) 95.7 0.038 8.2E-07 69.3 9.4 193 1004-1230 127-340 (1118)
280 KOG0280 Uncharacterized conser 95.7 1 2.2E-05 51.7 19.5 189 1016-1235 126-336 (339)
281 smart00320 WD40 WD40 repeats. 95.7 0.03 6.5E-07 38.2 5.0 39 1234-1289 2-40 (40)
282 KOG1354 Serine/threonine prote 95.4 0.1 2.2E-06 60.5 10.9 262 946-1245 27-373 (433)
283 PF03178 CPSF_A: CPSF A subuni 95.4 2.8 6E-05 46.3 21.5 98 990-1093 2-118 (321)
284 PRK04043 tolB translocation pr 95.2 0.7 1.5E-05 53.9 17.0 176 949-1166 192-388 (419)
285 KOG2695 WD40 repeat protein [G 95.1 0.058 1.3E-06 62.3 7.7 136 984-1131 228-381 (425)
286 KOG2695 WD40 repeat protein [G 95.0 0.077 1.7E-06 61.4 8.4 123 947-1101 255-387 (425)
287 KOG2041 WD40 repeat protein [G 95.0 1.1 2.4E-05 55.9 18.2 264 945-1265 15-327 (1189)
288 PRK04043 tolB translocation pr 94.9 5.8 0.00013 46.6 23.4 296 892-1245 88-412 (419)
289 PF11768 DUF3312: Protein of u 94.9 0.38 8.2E-06 58.4 14.1 69 946-1042 261-331 (545)
290 PF07433 DUF1513: Protein of u 94.9 5.1 0.00011 46.2 22.1 85 991-1083 29-122 (305)
291 cd00216 PQQ_DH Dehydrogenases 94.9 4.7 0.0001 47.8 22.6 247 986-1243 116-435 (488)
292 KOG0309 Conserved WD40 repeat- 94.6 0.13 2.7E-06 63.9 9.1 145 1067-1291 77-232 (1081)
293 KOG1832 HIV-1 Vpr-binding prot 94.5 0.042 9.2E-07 68.7 5.2 188 1012-1241 1102-1300(1516)
294 PF15492 Nbas_N: Neuroblastoma 94.5 2.4 5.2E-05 48.3 18.1 231 950-1241 3-268 (282)
295 PF08450 SGL: SMP-30/Gluconola 94.2 7.3 0.00016 41.1 20.1 158 1016-1234 4-166 (246)
296 KOG1409 Uncharacterized conser 94.2 0.15 3.3E-06 59.0 8.3 103 982-1091 167-271 (404)
297 COG2706 3-carboxymuconate cycl 93.9 16 0.00035 43.0 23.5 279 988-1300 14-330 (346)
298 KOG1645 RING-finger-containing 93.9 0.3 6.6E-06 57.5 10.1 73 946-1044 195-270 (463)
299 KOG1064 RAVE (regulator of V-A 93.7 0.077 1.7E-06 70.3 5.3 95 985-1099 2310-2407(2439)
300 COG5354 Uncharacterized protei 93.6 5.3 0.00011 48.7 19.5 113 947-1094 35-163 (561)
301 PF07569 Hira: TUP1-like enhan 93.4 0.35 7.7E-06 52.1 9.0 58 1195-1257 7-78 (219)
302 PF00930 DPPIV_N: Dipeptidyl p 93.4 6.9 0.00015 44.2 19.3 75 953-1045 1-76 (353)
303 KOG4714 Nucleoporin [Nuclear s 93.4 0.26 5.7E-06 55.7 8.1 134 986-1127 107-255 (319)
304 KOG1832 HIV-1 Vpr-binding prot 93.3 0.07 1.5E-06 66.9 3.8 170 1067-1266 1108-1286(1516)
305 COG2706 3-carboxymuconate cycl 93.1 22 0.00048 41.9 22.8 249 918-1253 74-344 (346)
306 KOG0882 Cyclophilin-related pe 92.6 0.74 1.6E-05 55.1 10.7 245 945-1254 54-327 (558)
307 KOG4532 WD40-like repeat conta 91.9 2.8 6.2E-05 48.0 13.6 218 1068-1307 81-319 (344)
308 COG5354 Uncharacterized protei 90.6 3.5 7.5E-05 50.2 13.3 159 944-1128 220-397 (561)
309 KOG4497 Uncharacterized conser 90.3 1 2.2E-05 52.5 8.4 211 1021-1295 19-249 (447)
310 PF11768 DUF3312: Protein of u 90.2 0.8 1.7E-05 55.8 7.9 70 1204-1292 261-330 (545)
311 PF07995 GSDH: Glucose / Sorbo 89.5 43 0.00094 38.2 21.5 130 948-1112 5-157 (331)
312 KOG2139 WD40 repeat protein [G 88.6 2.2 4.8E-05 50.3 9.6 110 946-1107 197-307 (445)
313 PF06433 Me-amine-dh_H: Methyl 88.6 5.3 0.00011 46.8 12.5 122 949-1095 40-171 (342)
314 KOG1645 RING-finger-containing 87.2 12 0.00027 44.9 14.4 244 1007-1290 188-460 (463)
315 PF14783 BBS2_Mid: Ciliary BBS 87.1 4.4 9.5E-05 40.9 9.4 61 985-1049 20-81 (111)
316 KOG4499 Ca2+-binding protein R 86.9 65 0.0014 37.2 20.3 81 1203-1297 212-292 (310)
317 COG5170 CDC55 Serine/threonine 86.8 3.2 6.9E-05 48.3 9.4 81 1143-1240 224-318 (460)
318 KOG2079 Vacuolar assembly/sort 86.7 1.7 3.7E-05 56.2 7.9 150 999-1157 75-239 (1206)
319 KOG2079 Vacuolar assembly/sort 86.5 1 2.2E-05 58.2 5.8 77 1155-1245 97-173 (1206)
320 KOG4649 PQQ (pyrrolo-quinoline 86.3 74 0.0016 37.2 20.4 266 985-1303 28-311 (354)
321 KOG2066 Vacuolar assembly/sort 86.0 4.7 0.0001 51.2 10.8 159 985-1157 88-265 (846)
322 PF15492 Nbas_N: Neuroblastoma 85.9 75 0.0016 36.9 19.5 184 1067-1297 50-264 (282)
323 KOG4714 Nucleoporin [Nuclear s 85.1 0.93 2E-05 51.5 4.0 93 992-1091 161-255 (319)
324 KOG2314 Translation initiation 84.9 31 0.00067 43.1 16.5 87 938-1040 240-334 (698)
325 TIGR03074 PQQ_membr_DH membran 84.9 51 0.0011 42.3 19.2 188 1023-1241 261-486 (764)
326 KOG1523 Actin-related protein 84.6 9.8 0.00021 44.6 11.8 203 876-1131 10-241 (361)
327 KOG2444 WD40 repeat protein [G 84.6 1.3 2.9E-05 49.3 4.9 169 1086-1295 2-181 (238)
328 PF12234 Rav1p_C: RAVE protein 82.8 6.9 0.00015 48.9 10.4 114 960-1079 20-147 (631)
329 PRK02888 nitrous-oxide reducta 82.6 11 0.00024 47.2 12.0 98 989-1091 295-405 (635)
330 PF00780 CNH: CNH domain; Int 81.6 4.1 8.9E-05 43.3 7.0 61 1209-1276 2-62 (275)
331 PF08553 VID27: VID27 cytoplas 81.0 12 0.00027 47.9 11.9 194 1012-1264 431-637 (794)
332 KOG4649 PQQ (pyrrolo-quinoline 79.3 1.1E+02 0.0023 36.0 17.1 56 985-1042 68-125 (354)
333 KOG2114 Vacuolar assembly/sort 78.8 13 0.00028 47.9 10.8 189 975-1175 28-243 (933)
334 cd00216 PQQ_DH Dehydrogenases 78.1 1.6E+02 0.0035 35.3 22.7 106 986-1100 67-193 (488)
335 PRK02888 nitrous-oxide reducta 76.1 59 0.0013 41.2 15.2 31 1062-1093 323-354 (635)
336 PF04762 IKI3: IKI3 family; I 75.5 2.8E+02 0.0061 36.7 24.5 277 882-1234 213-521 (928)
337 KOG1912 WD40 repeat protein [G 74.7 55 0.0012 42.4 14.4 127 946-1104 17-157 (1062)
338 PF14655 RAB3GAP2_N: Rab3 GTPa 74.1 9 0.00019 45.8 7.6 83 1207-1292 312-399 (415)
339 PF02897 Peptidase_S9_N: Proly 73.8 1.7E+02 0.0037 33.5 21.9 77 944-1042 123-212 (414)
340 KOG1275 PAB-dependent poly(A) 73.4 6.2 0.00013 50.9 6.3 75 1207-1291 180-254 (1118)
341 PF07433 DUF1513: Protein of u 72.7 2E+02 0.0043 33.8 17.4 73 1033-1112 29-110 (305)
342 PF03178 CPSF_A: CPSF A subuni 72.0 1.4E+02 0.003 33.3 15.6 174 872-1091 22-203 (321)
343 KOG1912 WD40 repeat protein [G 70.7 67 0.0015 41.7 13.9 249 986-1254 131-476 (1062)
344 PF04762 IKI3: IKI3 family; I 70.4 3.6E+02 0.0078 35.8 24.6 249 991-1271 48-374 (928)
345 KOG1008 Uncharacterized conser 68.9 2 4.4E-05 53.3 0.9 208 1014-1229 105-351 (783)
346 KOG1897 Damage-specific DNA bi 68.7 4.2E+02 0.009 35.8 25.3 176 899-1089 184-389 (1096)
347 PF04841 Vps16_N: Vps16, N-ter 68.2 2.6E+02 0.0056 33.3 21.7 221 1017-1277 43-286 (410)
348 PF11715 Nup160: Nucleoporin N 67.9 14 0.00031 44.0 7.5 30 1020-1049 228-257 (547)
349 PF10313 DUF2415: Uncharacteri 66.8 12 0.00026 32.5 4.8 33 1012-1044 1-37 (43)
350 PF08553 VID27: VID27 cytoplas 64.1 45 0.00098 43.1 11.1 89 1157-1264 494-594 (794)
351 PF10433 MMS1_N: Mono-function 63.5 3.3E+02 0.0071 32.7 21.9 51 1204-1255 448-503 (504)
352 PF10168 Nup88: Nuclear pore c 63.5 2.3E+02 0.0049 36.6 16.8 114 1146-1273 152-310 (717)
353 smart00564 PQQ beta-propeller 63.5 11 0.00023 28.6 3.6 27 1213-1239 5-31 (33)
354 PF02897 Peptidase_S9_N: Proly 62.8 2.8E+02 0.0062 31.8 17.6 230 1067-1322 130-398 (414)
355 KOG1008 Uncharacterized conser 60.8 10 0.00022 47.6 4.6 102 1157-1278 166-275 (783)
356 PF12894 Apc4_WD40: Anaphase-p 59.8 12 0.00025 32.4 3.5 30 1207-1237 16-45 (47)
357 KOG4640 Anaphase-promoting com 59.0 10 0.00022 47.4 4.2 49 948-1038 66-114 (665)
358 PF05096 Glu_cyclase_2: Glutam 58.7 1.9E+02 0.0041 33.4 13.6 117 948-1099 48-166 (264)
359 PF14783 BBS2_Mid: Ciliary BBS 58.6 1E+02 0.0022 31.5 10.3 27 1013-1039 1-32 (111)
360 TIGR03075 PQQ_enz_alc_DH PQQ-d 57.3 3.8E+02 0.0082 33.1 16.7 217 987-1237 76-338 (527)
361 COG5170 CDC55 Serine/threonine 56.9 23 0.00049 41.8 6.2 138 944-1103 172-323 (460)
362 TIGR03606 non_repeat_PQQ dehyd 56.5 1.2E+02 0.0025 37.2 12.2 139 946-1112 31-208 (454)
363 PHA02713 hypothetical protein; 55.8 1.4E+02 0.003 36.8 12.8 106 990-1104 432-547 (557)
364 PF07569 Hira: TUP1-like enhan 55.1 46 0.001 36.3 7.9 33 1016-1048 16-48 (219)
365 PF00780 CNH: CNH domain; Int 54.9 3E+02 0.0065 29.6 19.4 227 985-1244 12-267 (275)
366 PF01011 PQQ: PQQ enzyme repea 54.7 17 0.00037 29.3 3.5 26 1215-1240 1-26 (38)
367 COG4946 Uncharacterized protei 54.2 1.7E+02 0.0036 36.7 12.7 126 992-1131 343-482 (668)
368 PF03022 MRJP: Major royal jel 53.6 60 0.0013 36.7 8.8 66 1033-1100 35-106 (287)
369 PF06433 Me-amine-dh_H: Methyl 53.4 51 0.0011 39.0 8.4 61 987-1049 264-329 (342)
370 COG4946 Uncharacterized protei 53.2 2.1E+02 0.0046 35.8 13.4 101 986-1096 377-483 (668)
371 PF11715 Nup160: Nucleoporin N 51.1 79 0.0017 38.0 9.7 81 1021-1101 157-259 (547)
372 KOG2041 WD40 repeat protein [G 49.2 37 0.00079 43.5 6.7 85 1009-1094 12-105 (1189)
373 PF13570 PQQ_3: PQQ-like domai 49.2 21 0.00046 28.7 3.3 24 1210-1233 17-40 (40)
374 PF04053 Coatomer_WDAD: Coatom 49.1 58 0.0012 39.3 8.2 121 943-1112 31-156 (443)
375 PRK10115 protease 2; Provision 47.0 3.2E+02 0.0069 34.8 14.3 77 944-1043 126-210 (686)
376 PF14761 HPS3_N: Hermansky-Pud 44.6 1.3E+02 0.0028 33.9 9.3 114 1198-1319 13-134 (215)
377 KOG2066 Vacuolar assembly/sort 44.4 2.8E+02 0.0062 36.4 13.2 188 985-1201 54-266 (846)
378 PF13449 Phytase-like: Esteras 43.6 5.6E+02 0.012 29.4 16.7 134 875-1032 17-168 (326)
379 KOG2114 Vacuolar assembly/sort 42.9 29 0.00064 44.9 4.7 71 1206-1278 27-100 (933)
380 PF04841 Vps16_N: Vps16, N-ter 42.2 1.9E+02 0.0042 34.3 10.9 112 947-1109 219-333 (410)
381 KOG2444 WD40 repeat protein [G 35.5 43 0.00094 37.9 4.1 70 972-1042 57-134 (238)
382 PF07676 PD40: WD40-like Beta 34.4 36 0.00078 26.9 2.4 18 946-963 10-27 (39)
383 KOG2395 Protein involved in va 34.1 1.3E+02 0.0029 37.8 8.0 76 983-1065 397-477 (644)
384 PF06977 SdiA-regulated: SdiA- 31.8 8.1E+02 0.018 27.8 18.8 221 945-1229 22-247 (248)
385 PRK00339 minC septum formation 30.5 1.9E+02 0.0041 32.7 8.0 82 1191-1292 156-242 (249)
386 PF06977 SdiA-regulated: SdiA- 30.2 2.9E+02 0.0064 31.2 9.4 113 901-1046 82-206 (248)
387 KOG0882 Cyclophilin-related pe 29.5 1.6E+02 0.0035 36.5 7.6 112 985-1100 117-241 (558)
388 KOG1983 Tomosyn and related SN 28.7 2.9E+02 0.0063 36.9 10.3 186 1021-1230 245-458 (993)
389 TIGR03118 PEPCTERM_chp_1 conse 27.0 1.2E+03 0.026 28.3 18.0 53 1180-1245 240-292 (336)
390 COG0823 TolB Periplasmic compo 25.7 3.4E+02 0.0073 32.8 9.4 133 951-1112 199-337 (425)
391 smart00561 MBT Present in Dros 25.1 32 0.0007 33.6 0.9 28 32-61 63-92 (96)
392 PF08728 CRT10: CRT10; InterP 24.8 6E+02 0.013 33.3 11.7 94 985-1089 119-245 (717)
393 KOG4460 Nuclear pore complex, 24.8 2.7E+02 0.0058 35.5 8.3 131 1022-1178 52-201 (741)
394 COG0823 TolB Periplasmic compo 24.3 3.1E+02 0.0067 33.2 8.7 56 1224-1296 218-273 (425)
395 PF10168 Nup88: Nuclear pore c 24.3 9.1E+02 0.02 31.5 13.2 94 940-1040 80-179 (717)
396 PF00930 DPPIV_N: Dipeptidyl p 23.5 75 0.0016 36.1 3.5 86 1078-1168 19-123 (353)
397 PF04053 Coatomer_WDAD: Coatom 23.5 4.1E+02 0.0088 32.5 9.6 140 947-1127 71-215 (443)
398 PF12894 Apc4_WD40: Anaphase-p 23.1 1.5E+02 0.0033 25.8 4.4 28 1012-1039 12-40 (47)
399 COG3391 Uncharacterized conser 20.5 1.4E+03 0.031 26.8 17.3 175 945-1163 74-270 (381)
400 PRK04804 minC septum formation 20.3 3.6E+02 0.0079 29.8 7.7 78 1195-1292 133-212 (221)
401 TIGR02276 beta_rpt_yvtn 40-res 20.2 1.5E+02 0.0033 23.1 3.7 29 1072-1100 4-32 (42)
No 1
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.1e-53 Score=458.12 Aligned_cols=241 Identities=21% Similarity=0.364 Sum_probs=225.6
Q ss_pred eeEEEecc-cceeEEEEe-cCCeEEEecCCCeEEEEe-----------ccCcceEEEee-----eee---cCCCC-cccc
Q 000725 1004 VVAKLKTD-DCVQCILVC-EPKHLIAVGESGKLHLWE-----------MNSSWSAQVEE-----CII---PINDC-IYPC 1061 (1329)
Q Consensus 1004 ll~kL~~h-~sV~cIlVc-DpnhLVSaSdDGkL~IWD-----------M~SgWsm~tee-----~Vi---~~n~~-v~p~ 1061 (1329)
...+|+|| ..|.|+-|+ |.+||||+|+||+|+||| |+|.|+|.|+| ||| ++|.| +|+.
T Consensus 47 ~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~l 126 (343)
T KOG0286|consen 47 TRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPL 126 (343)
T ss_pred eEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEec
Confidence 45799999 999999999 999999999999999999 99999999999 999 99999 7777
Q ss_pred eeE-------EE-------------ecCCCCCeeEecCCCccEEEEEccccceeeeeccCccceeE--eccccccccccC
Q 000725 1062 IVE-------MK-------------RIPKCAPLVVGHNGFGEFGIWDISKRVLVSRFSAARASIYQ--FFPINLFSWQRN 1119 (1329)
Q Consensus 1062 I~e-------lK-------------rFpkss~lIVTgSGDgtf~LWDIskg~llqsF~ahs~sV~s--fsP~~s~S~d~~ 1119 (1329)
-.. ++ +|.. +.+|||+|||+||+||||++|++++.|++|+++|++ |+|..
T Consensus 127 s~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~------- 198 (343)
T KOG0286|consen 127 STRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSD------- 198 (343)
T ss_pred ccccccccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCC-------
Confidence 654 11 8988 899999999999999999999999999999999999 88842
Q ss_pred cceEECcchhhh------c-ccccccccc---CCCceeecCCCCccceEEEEeeccCccchh--hcccccccCCCCccee
Q 000725 1120 GSVSMDASLELT------N-TATTSLFSK---HSEKSSFCPSVGEDSAIWLLVSTISDSDAQ--HNCMSRDCQKNPVRFW 1187 (1329)
Q Consensus 1120 v~tfd~~s~d~~------l-eatv~~fSg---dvn~VsF~P~sGeD~AiwLLVST~Sdd~t~--~Dlra~~~~gH~n~~w 1187 (1329)
.++|.++.+|+. | +.++|.|.+ |+|+|+|+| +|++|| |+||+.+| ||+|+++
T Consensus 199 ~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP-~G~afa------tGSDD~tcRlyDlRaD~--------- 262 (343)
T KOG0286|consen 199 GNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFP-SGDAFA------TGSDDATCRLYDLRADQ--------- 262 (343)
T ss_pred CCeEEecccccceeeeeccCcceeEeecccccccceEEEcc-CCCeee------ecCCCceeEEEeecCCc---------
Confidence 488888888887 5 688999988 999999999 999999 99999888 9999999
Q ss_pred EEEeeeccceecCCCCCCCceeeecCCCeEEeecCCCeEEEEEccccceeeeeecccCceEEEEEecCCCCceEEEecCC
Q 000725 1188 RLALLVKNRVILGSPLDPRASAIGASSGLGIIGTNDGLVYAWELSSGNKLGILHHFKGGTVSCIATDDSGLQALAVAGDG 1267 (1329)
Q Consensus 1188 RLALl~K~siI~Gs~ldpra~afs~SG~~gfaGT~DGlVYmWDLstG~kL~tL~~Heg~rVSCVA~dps~p~~~AsA~d~ 1267 (1329)
+||.|.++.+|+|. ++++||.|||++|+||.|+++++||.++|++++.|.+|+| ||||+.++ |+|||+|+++
T Consensus 263 ~~a~ys~~~~~~gi----tSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeN-RvScl~~s---~DG~av~TgS 334 (343)
T KOG0286|consen 263 ELAVYSHDSIICGI----TSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHEN-RVSCLGVS---PDGMAVATGS 334 (343)
T ss_pred EEeeeccCcccCCc----eeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCC-eeEEEEEC---CCCcEEEecc
Confidence 99999999999999 9999999999999999999999999999999999999999 99999999 9999999999
Q ss_pred CCCCccccC
Q 000725 1268 PDGGRRQRD 1276 (1329)
Q Consensus 1268 ~d~~~r~~~ 1276 (1329)
||.++|||+
T Consensus 335 WDs~lriW~ 343 (343)
T KOG0286|consen 335 WDSTLRIWA 343 (343)
T ss_pred hhHheeecC
Confidence 999999995
No 2
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=9.2e-36 Score=314.63 Aligned_cols=264 Identities=13% Similarity=0.145 Sum_probs=244.0
Q ss_pred cceeeecCCCcEEEEecCccCccccCCCccccccccccccCCCCcEEEEEecCcceeeeEEEecc-cceeEEEEe-cCCe
Q 000725 947 RSCALFTPDGQYLVLLDSMKTPYCREGRSDCLCSTCTSHRLDENAVKIVKVKPGYVSVVAKLKTD-DCVQCILVC-EPKH 1024 (1329)
Q Consensus 947 rsglqFTPDGQ~LvLlgsik~p~CR~~~~dC~Cs~C~~s~seDNtVKIv~V~~G~vsll~kL~~h-~sV~cIlVc-Dpnh 1024 (1329)
-..++|+-||+|++ .|+.|+|||+|++..|. +++++.+| .+|.++..+ |+..
T Consensus 20 V~avryN~dGnY~l------------------------tcGsdrtvrLWNp~rg~--liktYsghG~EVlD~~~s~Dnsk 73 (307)
T KOG0316|consen 20 VRAVRYNVDGNYCL------------------------TCGSDRTVRLWNPLRGA--LIKTYSGHGHEVLDAALSSDNSK 73 (307)
T ss_pred eEEEEEccCCCEEE------------------------EcCCCceEEeecccccc--eeeeecCCCceeeeccccccccc
Confidence 34689999999999 99999999999999999 99999999 999999999 9999
Q ss_pred EEEecCCCeEEEEeccCcceEEEeeeeecCCCCcccceeEEEecCCCCCeeEecCCCccEEEEEccccce--eeeeccCc
Q 000725 1025 LIAVGESGKLHLWEMNSSWSAQVEECIIPINDCIYPCIVEMKRIPKCAPLVVGHNGFGEFGIWDISKRVL--VSRFSAAR 1102 (1329)
Q Consensus 1025 LVSaSdDGkL~IWDM~SgWsm~tee~Vi~~n~~v~p~I~elKrFpkss~lIVTgSGDgtf~LWDIskg~l--lqsF~ahs 1102 (1329)
++|+|.|+.+.+||++||-+.+.+. +|..-|..+ +|+..++.|++||.|.++++||..++.. +|.|....
T Consensus 74 f~s~GgDk~v~vwDV~TGkv~Rr~r-------gH~aqVNtV-~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~ 145 (307)
T KOG0316|consen 74 FASCGGDKAVQVWDVNTGKVDRRFR-------GHLAQVNTV-RFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAK 145 (307)
T ss_pred cccCCCCceEEEEEcccCeeeeecc-------cccceeeEE-EecCcceEEEeccccceeEEEEcccCCCCccchhhhhc
Confidence 9999999999999999999999999 999999999 9999999999999999999999999987 99999999
Q ss_pred cceeE--ecccc--ccccccCcceEECcchhhhccccccccccCCCceeecCCCCccceEEEEeeccCccchhhccc---
Q 000725 1103 ASIYQ--FFPIN--LFSWQRNGSVSMDASLELTNTATTSLFSKHSEKSSFCPSVGEDSAIWLLVSTISDSDAQHNCM--- 1175 (1329)
Q Consensus 1103 ~sV~s--fsP~~--s~S~d~~v~tfd~~s~d~~leatv~~fSgdvn~VsF~P~sGeD~AiwLLVST~Sdd~t~~Dlr--- 1175 (1329)
+.|++ +.--+ .+|.||++|+|+.+.+.++-.--.+++.. ++|+| | |.|.|+|+++.+.++.|..
T Consensus 146 D~V~Si~v~~heIvaGS~DGtvRtydiR~G~l~sDy~g~pit~----vs~s~----d-~nc~La~~l~stlrLlDk~tGk 216 (307)
T KOG0316|consen 146 DGVSSIDVAEHEIVAGSVDGTVRTYDIRKGTLSSDYFGHPITS----VSFSK----D-GNCSLASSLDSTLRLLDKETGK 216 (307)
T ss_pred CceeEEEecccEEEeeccCCcEEEEEeecceeehhhcCCccee----EEecC----C-CCEEEEeeccceeeecccchhH
Confidence 99999 55444 89999999999999998883222454444 99999 8 9999999999999999998
Q ss_pred -ccccCCCCcceeEEEeeeccceecCCCCCCCceeeecCCCeEEeecCCCeEEEEEccccceeeeeecccCceEEEEEec
Q 000725 1176 -SRDCQKNPVRFWRLALLVKNRVILGSPLDPRASAIGASSGLGIIGTNDGLVYAWELSSGNKLGILHHFKGGTVSCIATD 1254 (1329)
Q Consensus 1176 -a~~~~gH~n~~wRLALl~K~siI~Gs~ldpra~afs~SG~~gfaGT~DGlVYmWDLstG~kL~tL~~Heg~rVSCVA~d 1254 (1329)
++.|.||.|..|++. |++.-+..|+|+|++||.||+|||..++.+..|..|...-|+.|++|
T Consensus 217 lL~sYkGhkn~eykld-----------------c~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~h 279 (307)
T KOG0316|consen 217 LLKSYKGHKNMEYKLD-----------------CCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCH 279 (307)
T ss_pred HHHHhcccccceeeee-----------------eeecccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecc
Confidence 899999999999988 99999999999999999999999999999999999999449999999
Q ss_pred CCCCceEEEecCCCCCC
Q 000725 1255 DSGLQALAVAGDGPDGG 1271 (1329)
Q Consensus 1255 ps~p~~~AsA~d~~d~~ 1271 (1329)
|+.++ +.+|++..+.-
T Consensus 280 p~~~~-f~~A~~~~~~~ 295 (307)
T KOG0316|consen 280 PTMDD-FITATGHGDLF 295 (307)
T ss_pred cCccc-eeEecCCceec
Confidence 99999 88887644433
No 3
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.98 E-value=3.4e-31 Score=297.38 Aligned_cols=275 Identities=19% Similarity=0.276 Sum_probs=241.6
Q ss_pred cccceeeecCCCcEEEEecCccCccccCCCccccccccccccCCCCcEEEEEecCcceeeeEEEecc-cceeEEEEe-cC
Q 000725 945 LERSCALFTPDGQYLVLLDSMKTPYCREGRSDCLCSTCTSHRLDENAVKIVKVKPGYVSVVAKLKTD-DCVQCILVC-EP 1022 (1329)
Q Consensus 945 ~ersglqFTPDGQ~LvLlgsik~p~CR~~~~dC~Cs~C~~s~seDNtVKIv~V~~G~vsll~kL~~h-~sV~cIlVc-Dp 1022 (1329)
-...++.|+|||++|+ .++.|++++||++..+...++.+|.+| ..|++|.|. |+
T Consensus 160 ~sv~~~~fs~~g~~l~------------------------~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~ 215 (456)
T KOG0266|consen 160 PSVTCVDFSPDGRALA------------------------AASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDG 215 (456)
T ss_pred CceEEEEEcCCCCeEE------------------------EccCCCcEEEeecccccchhhccccccccceeeeEECCCC
Confidence 3455699999999999 899999999999977654577888999 999999999 99
Q ss_pred CeEEEecCCCeEEEEec-cCcceEEEeeeeecCCCCcccceeEEEecCCCCCeeEecCCCccEEEEEccccceeeeeccC
Q 000725 1023 KHLIAVGESGKLHLWEM-NSSWSAQVEECIIPINDCIYPCIVEMKRIPKCAPLVVGHNGFGEFGIWDISKRVLVSRFSAA 1101 (1329)
Q Consensus 1023 nhLVSaSdDGkL~IWDM-~SgWsm~tee~Vi~~n~~v~p~I~elKrFpkss~lIVTgSGDgtf~LWDIskg~llqsF~ah 1101 (1329)
.+|+++++|++|+|||. ..+-.++++. ||...+.++ .|.+.+++|++|++|++|+|||+..|+++..+.+|
T Consensus 216 ~~l~s~s~D~tiriwd~~~~~~~~~~l~-------gH~~~v~~~-~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~h 287 (456)
T KOG0266|consen 216 SYLLSGSDDKTLRIWDLKDDGRNLKTLK-------GHSTYVTSV-AFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGH 287 (456)
T ss_pred cEEEEecCCceEEEeeccCCCeEEEEec-------CCCCceEEE-EecCCCCEEEEecCCCcEEEEeccCCeEEEeeecc
Confidence 99999999999999999 6668999999 999999999 99999999999999999999999999999999999
Q ss_pred ccceeE--ecccc----ccccccCcceEECcchhh--h--c-ccccc-ccccCCCceeecCCCCccceEEEEeeccCccc
Q 000725 1102 RASIYQ--FFPIN----LFSWQRNGSVSMDASLEL--T--N-TATTS-LFSKHSEKSSFCPSVGEDSAIWLLVSTISDSD 1169 (1329)
Q Consensus 1102 s~sV~s--fsP~~----s~S~d~~v~tfd~~s~d~--~--l-eatv~-~fSgdvn~VsF~P~sGeD~AiwLLVST~Sdd~ 1169 (1329)
++.|.. |.|++ +.++|+.|++||+.++.+ . + ..... ++.. +.|+| + +..||+++.+...
T Consensus 288 s~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~----~~fsp----~-~~~ll~~~~d~~~ 358 (456)
T KOG0266|consen 288 SDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTS----VQFSP----N-GKYLLSASLDRTL 358 (456)
T ss_pred CCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeE----EEECC----C-CcEEEEecCCCeE
Confidence 999988 99999 779999999999999993 2 3 22222 6777 99999 7 8999999999999
Q ss_pred hhhccc----ccccCCCCcceeEEEeeeccceecCCCCCCCceeeecCCCeEEeecCCCeEEEEEccccceeeeeecc-c
Q 000725 1170 AQHNCM----SRDCQKNPVRFWRLALLVKNRVILGSPLDPRASAIGASSGLGIIGTNDGLVYAWELSSGNKLGILHHF-K 1244 (1329)
Q Consensus 1170 t~~Dlr----a~~~~gH~n~~wRLALl~K~siI~Gs~ldpra~afs~SG~~gfaGT~DGlVYmWDLstG~kL~tL~~H-e 1244 (1329)
++||++ ..+|.+|.+..+++- ....++.|.++++|+.|+.||+||++++..+.+|.+| .
T Consensus 359 ~~w~l~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~ 422 (456)
T KOG0266|consen 359 KLWDLRSGKSVGTYTGHSNLVRCIF----------------SPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSK 422 (456)
T ss_pred EEEEccCCcceeeecccCCcceeEe----------------cccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCC
Confidence 999999 688999999855533 2445889999999999999999999999999999999 7
Q ss_pred CceEEEEEecCCCCceEEEecCCCCCCccccCCCCCCCCcEEEeeeC
Q 000725 1245 GGTVSCIATDDSGLQALAVAGDGPDGGRRQRDPRHGQNDHVRIWKMD 1291 (1329)
Q Consensus 1245 g~rVSCVA~dps~p~~~AsA~d~~d~~~r~~~~~~s~D~~VRiW~~~ 1291 (1329)
. .|..++++|..+. +|+++- ..|+.||+|+.+
T Consensus 423 ~-~~~~~~~~~~~~~-~~s~s~-------------~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 423 A-AVSDLSSHPTENL-IASSSF-------------EGDGLIRLWKYD 454 (456)
T ss_pred C-ceeccccCCCcCe-eeecCc-------------CCCceEEEecCC
Confidence 7 8999999999988 888854 356666666643
No 4
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=2.8e-29 Score=277.25 Aligned_cols=268 Identities=18% Similarity=0.246 Sum_probs=232.7
Q ss_pred ceeeecCCCcEEEEecCccCccccCCCccccccccccccCCCCcEEEEEecCcceeeeEEEecc-cceeEEEEe-cCCeE
Q 000725 948 SCALFTPDGQYLVLLDSMKTPYCREGRSDCLCSTCTSHRLDENAVKIVKVKPGYVSVVAKLKTD-DCVQCILVC-EPKHL 1025 (1329)
Q Consensus 948 sglqFTPDGQ~LvLlgsik~p~CR~~~~dC~Cs~C~~s~seDNtVKIv~V~~G~vsll~kL~~h-~sV~cIlVc-DpnhL 1025 (1329)
.++||+|||.+|| +||.|.||||||..+-. ++.+.++| .=|+||.|+ |..+|
T Consensus 119 l~~~fsp~g~~l~------------------------tGsGD~TvR~WD~~TeT--p~~t~KgH~~WVlcvawsPDgk~i 172 (480)
T KOG0271|consen 119 LSVQFSPTGSRLV------------------------TGSGDTTVRLWDLDTET--PLFTCKGHKNWVLCVAWSPDGKKI 172 (480)
T ss_pred EEEEecCCCceEE------------------------ecCCCceEEeeccCCCC--cceeecCCccEEEEEEECCCcchh
Confidence 4799999999999 99999999999999988 99999999 889999999 99999
Q ss_pred EEecCCCeEEEEeccCcceEEEeeeeecCCCCcccceeEE-----EecCCCCCeeEecCCCccEEEEEccccceeeeecc
Q 000725 1026 IAVGESGKLHLWEMNSSWSAQVEECIIPINDCIYPCIVEM-----KRIPKCAPLVVGHNGFGEFGIWDISKRVLVSRFSA 1100 (1329)
Q Consensus 1026 VSaSdDGkL~IWDM~SgWsm~tee~Vi~~n~~v~p~I~el-----KrFpkss~lIVTgSGDgtf~LWDIskg~llqsF~a 1100 (1329)
+|++.||.|.+||-.+|=.+-. +..+|.--|+.| -+.|+|. +++++|.||+++|||+.-|+++-...|
T Consensus 173 ASG~~dg~I~lwdpktg~~~g~------~l~gH~K~It~Lawep~hl~p~~r-~las~skDg~vrIWd~~~~~~~~~lsg 245 (480)
T KOG0271|consen 173 ASGSKDGSIRLWDPKTGQQIGR------ALRGHKKWITALAWEPLHLVPPCR-RLASSSKDGSVRIWDTKLGTCVRTLSG 245 (480)
T ss_pred hccccCCeEEEecCCCCCcccc------cccCcccceeEEeecccccCCCcc-ceecccCCCCEEEEEccCceEEEEecc
Confidence 9999999999999888754432 335888889887 2566655 999999999999999999999999999
Q ss_pred CccceeEeccc--c---ccccccCcceEECcchhhh--cccccccc----------------------------------
Q 000725 1101 ARASIYQFFPI--N---LFSWQRNGSVSMDASLELT--NTATTSLF---------------------------------- 1139 (1329)
Q Consensus 1101 hs~sV~sfsP~--~---s~S~d~~v~tfd~~s~d~~--leatv~~f---------------------------------- 1139 (1329)
|+.+|+++-=- + ++|.|++|++|...++.+. |.+|.+|+
T Consensus 246 HT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al 325 (480)
T KOG0271|consen 246 HTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKAL 325 (480)
T ss_pred CccceEEEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHH
Confidence 99999994333 3 8999999999999986655 22333332
Q ss_pred ---------------cc--------------------------CCCceeecCCCCccceEEEEeeccCccchhhccc---
Q 000725 1140 ---------------SK--------------------------HSEKSSFCPSVGEDSAIWLLVSTISDSDAQHNCM--- 1175 (1329)
Q Consensus 1140 ---------------Sg--------------------------dvn~VsF~P~sGeD~AiwLLVST~Sdd~t~~Dlr--- 1175 (1329)
|+ -+|.|+|+| | +.||...+-+.+.++||.+
T Consensus 326 ~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSP----d-~r~IASaSFDkSVkLW~g~tGk 400 (480)
T KOG0271|consen 326 ERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSP----D-GRYIASASFDKSVKLWDGRTGK 400 (480)
T ss_pred HHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECC----C-ccEEEEeecccceeeeeCCCcc
Confidence 22 267899999 8 9999999999999999999
Q ss_pred -ccccCCCCcceeEEEeeeccceecCCCCCCCceeeecCCCeEEeecCCCeEEEEEccccceeeeeecccCceEEEEEec
Q 000725 1176 -SRDCQKNPVRFWRLALLVKNRVILGSPLDPRASAIGASSGLGIIGTNDGLVYAWELSSGNKLGILHHFKGGTVSCIATD 1254 (1329)
Q Consensus 1176 -a~~~~gH~n~~wRLALl~K~siI~Gs~ldpra~afs~SG~~gfaGT~DGlVYmWDLstG~kL~tL~~Heg~rVSCVA~d 1254 (1329)
+..|-||....|+ ++-+...|++++|+-|.+++|||+.|.+...-|-||.+ .|-||..+
T Consensus 401 ~lasfRGHv~~VYq-------------------vawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~D-EVf~vDws 460 (480)
T KOG0271|consen 401 FLASFRGHVAAVYQ-------------------VAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHAD-EVFAVDWS 460 (480)
T ss_pred hhhhhhhccceeEE-------------------EEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCc-eEEEEEec
Confidence 7788999999999 55789999999999999999999999999999999999 89999999
Q ss_pred CCCCceEEEecCCCCCCccccCCCCCCCCcEEEee
Q 000725 1255 DSGLQALAVAGDGPDGGRRQRDPRHGQNDHVRIWK 1289 (1329)
Q Consensus 1255 ps~p~~~AsA~d~~d~~~r~~~~~~s~D~~VRiW~ 1289 (1329)
|++.. +|++ +.|.-+|+|.
T Consensus 461 pDG~r-V~sg---------------gkdkv~~lw~ 479 (480)
T KOG0271|consen 461 PDGQR-VASG---------------GKDKVLRLWR 479 (480)
T ss_pred CCCce-eecC---------------CCceEEEeec
Confidence 77777 5665 6677777774
No 5
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=3.7e-30 Score=286.22 Aligned_cols=262 Identities=14% Similarity=0.115 Sum_probs=228.3
Q ss_pred cceeeecCCCcEEEEecCccCccccCCCccccccccccccCCCCcEEEEEecCcceeeeEEEecc-cceeEEEEe---cC
Q 000725 947 RSCALFTPDGQYLVLLDSMKTPYCREGRSDCLCSTCTSHRLDENAVKIVKVKPGYVSVVAKLKTD-DCVQCILVC---EP 1022 (1329)
Q Consensus 947 rsglqFTPDGQ~LvLlgsik~p~CR~~~~dC~Cs~C~~s~seDNtVKIv~V~~G~vsll~kL~~h-~sV~cIlVc---Dp 1022 (1329)
.++..|++||..|| +||-++.+|+|++..+. .+++|.+| ..|-+|.|- +.
T Consensus 178 is~~~fS~ds~~la------------------------T~swsG~~kvW~~~~~~--~~~~l~gH~~~v~~~~fhP~~~~ 231 (459)
T KOG0272|consen 178 ISGCSFSRDSKHLA------------------------TGSWSGLVKVWSVPQCN--LLQTLRGHTSRVGAAVFHPVDSD 231 (459)
T ss_pred ceeeEeecCCCeEE------------------------EeecCCceeEeecCCcc--eeEEEeccccceeeEEEccCCCc
Confidence 46889999999999 99999999999999985 99999999 999999998 36
Q ss_pred CeEEEecCCCeEEEEeccCcceEEEeeeeecCCCCcccceeEEEecCCCCCeeEecCCCccEEEEEccccceeeeeccCc
Q 000725 1023 KHLIAVGESGKLHLWEMNSSWSAQVEECIIPINDCIYPCIVEMKRIPKCAPLVVGHNGFGEFGIWDISKRVLVSRFSAAR 1102 (1329)
Q Consensus 1023 nhLVSaSdDGkL~IWDM~SgWsm~tee~Vi~~n~~v~p~I~elKrFpkss~lIVTgSGDgtf~LWDIskg~llqsF~ahs 1102 (1329)
..|+|++.||++++|+..+......++ +|..-|-.+ +|+++++.++|+++|.|-+|||+++++.+---+||+
T Consensus 232 ~~lat~s~Dgtvklw~~~~e~~l~~l~-------gH~~RVs~V-afHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs 303 (459)
T KOG0272|consen 232 LNLATASADGTVKLWKLSQETPLQDLE-------GHLARVSRV-AFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHS 303 (459)
T ss_pred cceeeeccCCceeeeccCCCcchhhhh-------cchhhheee-eecCCCceeeecccccchhhcccccchhhHhhcccc
Confidence 799999999999999999988888888 999999999 999999999999999999999999999988899999
Q ss_pred cceeE--ecccc----ccccccCcceEECcchhhh--ccccccccccCCCceeecCCCCccceEEEEeeccCccchh--h
Q 000725 1103 ASIYQ--FFPIN----LFSWQRNGSVSMDASLELT--NTATTSLFSKHSEKSSFCPSVGEDSAIWLLVSTISDSDAQ--H 1172 (1329)
Q Consensus 1103 ~sV~s--fsP~~----s~S~d~~v~tfd~~s~d~~--leatv~~fSgdvn~VsF~P~sGeD~AiwLLVST~Sdd~t~--~ 1172 (1329)
..|++ |-|+| ++..|-.+++||++++++. |++|.-.+-+ |.|+| .|.-+| |++.|.+| |
T Consensus 304 ~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~----V~fsP-NGy~lA------Tgs~Dnt~kVW 372 (459)
T KOG0272|consen 304 KGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILS----VAFSP-NGYHLA------TGSSDNTCKVW 372 (459)
T ss_pred cccceeEecCCCceeeccCccchhheeecccCcEEEEecccccceee----EeECC-CceEEe------ecCCCCcEEEe
Confidence 99999 99999 8999999999999999999 4667776777 99999 555544 55555555 9
Q ss_pred ccc----ccccCCCCcceeEEEeeeccceecCCCCCCCceeeec-CCCeEEeecCCCeEEEEEccccceeeeeecccCce
Q 000725 1173 NCM----SRDCQKNPVRFWRLALLVKNRVILGSPLDPRASAIGA-SSGLGIIGTNDGLVYAWELSSGNKLGILHHFKGGT 1247 (1329)
Q Consensus 1173 Dlr----a~~~~gH~n~~wRLALl~K~siI~Gs~ldpra~afs~-SG~~gfaGT~DGlVYmWDLstG~kL~tL~~Heg~r 1247 (1329)
|+| +++--.|.|-+-+ +.|++ .|.++++++.|++|+||-.-++..+..|.||++ +
T Consensus 373 DLR~r~~ly~ipAH~nlVS~-------------------Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~-k 432 (459)
T KOG0272|consen 373 DLRMRSELYTIPAHSNLVSQ-------------------VKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEG-K 432 (459)
T ss_pred eecccccceecccccchhhh-------------------eEecccCCeEEEEcccCcceeeecCCCcccchhhcCCcc-c
Confidence 999 5555566666655 67887 999999999999999999999999999999999 9
Q ss_pred EEEEEecCCCCceEEEecCCCCCCccccC
Q 000725 1248 VSCIATDDSGLQALAVAGDGPDGGRRQRD 1276 (1329)
Q Consensus 1248 VSCVA~dps~p~~~AsA~d~~d~~~r~~~ 1276 (1329)
|.|+++++.+.- ||++ ++|.|+|.|.
T Consensus 433 V~s~Dis~d~~~-i~t~--s~DRT~KLW~ 458 (459)
T KOG0272|consen 433 VISLDISPDSQA-IATS--SFDRTIKLWR 458 (459)
T ss_pred eEEEEeccCCce-EEEe--ccCceeeecc
Confidence 999999955443 5555 4555555554
No 6
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.96 E-value=1.6e-27 Score=224.74 Aligned_cols=265 Identities=17% Similarity=0.266 Sum_probs=215.9
Q ss_pred ccceeeecCCCcEEEEecCccCccccCCCccccccccccccCCCCcEEEEEecCcceeeeEEEecc-cceeEEEEe-cCC
Q 000725 946 ERSCALFTPDGQYLVLLDSMKTPYCREGRSDCLCSTCTSHRLDENAVKIVKVKPGYVSVVAKLKTD-DCVQCILVC-EPK 1023 (1329)
Q Consensus 946 ersglqFTPDGQ~LvLlgsik~p~CR~~~~dC~Cs~C~~s~seDNtVKIv~V~~G~vsll~kL~~h-~sV~cIlVc-Dpn 1023 (1329)
..++++|+|||++|+ .++.|+.|+||++.++. ++..+.+| ..+.++.++ +.+
T Consensus 11 ~i~~~~~~~~~~~l~------------------------~~~~~g~i~i~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~ 64 (289)
T cd00200 11 GVTCVAFSPDGKLLA------------------------TGSGDGTIKVWDLETGE--LLRTLKGHTGPVRDVAASADGT 64 (289)
T ss_pred CEEEEEEcCCCCEEE------------------------EeecCcEEEEEEeeCCC--cEEEEecCCcceeEEEECCCCC
Confidence 457899999999999 77889999999999987 88899999 778799999 778
Q ss_pred eEEEecCCCeEEEEeccCcceEEEeeeeecCCCCcccceeEEEecCCCCCeeEecCCCccEEEEEccccceeeeeccCcc
Q 000725 1024 HLIAVGESGKLHLWEMNSSWSAQVEECIIPINDCIYPCIVEMKRIPKCAPLVVGHNGFGEFGIWDISKRVLVSRFSAARA 1103 (1329)
Q Consensus 1024 hLVSaSdDGkL~IWDM~SgWsm~tee~Vi~~n~~v~p~I~elKrFpkss~lIVTgSGDgtf~LWDIskg~llqsF~ahs~ 1103 (1329)
+|++++.||.|++||+.++-...... .+...|.++ .|.+.+.++++++.||.+.+||+.+++.+..|.+|..
T Consensus 65 ~l~~~~~~~~i~i~~~~~~~~~~~~~-------~~~~~i~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 136 (289)
T cd00200 65 YLASGSSDKTIRLWDLETGECVRTLT-------GHTSYVSSV-AFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTD 136 (289)
T ss_pred EEEEEcCCCeEEEEEcCcccceEEEe-------ccCCcEEEE-EEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCC
Confidence 99999999999999999875444444 555678888 7777789999999999999999999999999999998
Q ss_pred ceeE--ecccc----ccccccCcceEECcchhhh--ccccccccccCCCceeecCCCCccceEEEEeeccCccchhhccc
Q 000725 1104 SIYQ--FFPIN----LFSWQRNGSVSMDASLELT--NTATTSLFSKHSEKSSFCPSVGEDSAIWLLVSTISDSDAQHNCM 1175 (1329)
Q Consensus 1104 sV~s--fsP~~----s~S~d~~v~tfd~~s~d~~--leatv~~fSgdvn~VsF~P~sGeD~AiwLLVST~Sdd~t~~Dlr 1175 (1329)
.|.+ |.|.+ .++.++.+++|+....+.. +..+.. .+..+.|.| + +..|++++.+.....||++
T Consensus 137 ~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~----~i~~~~~~~----~-~~~l~~~~~~~~i~i~d~~ 207 (289)
T cd00200 137 WVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTG----EVNSVAFSP----D-GEKLLSSSSDGTIKLWDLS 207 (289)
T ss_pred cEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCcc----ccceEEECC----C-cCEEEEecCCCcEEEEECC
Confidence 8888 88866 4556999999999876655 233333 344499999 5 5677778878888889997
Q ss_pred c----cccCCCCcceeEEEeeeccceecCCCCCCCceeeecCCCeEEeecCCCeEEEEEccccceeeeeecccCceEEEE
Q 000725 1176 S----RDCQKNPVRFWRLALLVKNRVILGSPLDPRASAIGASSGLGIIGTNDGLVYAWELSSGNKLGILHHFKGGTVSCI 1251 (1329)
Q Consensus 1176 a----~~~~gH~n~~wRLALl~K~siI~Gs~ldpra~afs~SG~~gfaGT~DGlVYmWDLstG~kL~tL~~Heg~rVSCV 1251 (1329)
. ..+..|.... +..++.+.+.++++|+.||.|++||+.+++.+..+.+|.+ .|.++
T Consensus 208 ~~~~~~~~~~~~~~i-------------------~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~-~i~~~ 267 (289)
T cd00200 208 TGKCLGTLRGHENGV-------------------NSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTN-SVTSL 267 (289)
T ss_pred CCceecchhhcCCce-------------------EEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCC-cEEEE
Confidence 3 3333333333 4467788889999999999999999999999999999999 89999
Q ss_pred EecCCCCceEEEecCCCCCCccccCCCCCCCCcEEEee
Q 000725 1252 ATDDSGLQALAVAGDGPDGGRRQRDPRHGQNDHVRIWK 1289 (1329)
Q Consensus 1252 A~dps~p~~~AsA~d~~d~~~r~~~~~~s~D~~VRiW~ 1289 (1329)
+++|.+.. ++++ +.|+.|+||+
T Consensus 268 ~~~~~~~~-l~~~---------------~~d~~i~iw~ 289 (289)
T cd00200 268 AWSPDGKR-LASG---------------SADGTIRIWD 289 (289)
T ss_pred EECCCCCE-EEEe---------------cCCCeEEecC
Confidence 99987665 7777 5677777774
No 7
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.95 E-value=7.3e-26 Score=267.81 Aligned_cols=265 Identities=13% Similarity=0.101 Sum_probs=211.0
Q ss_pred cceeeecCCCcEEEEecCccCccccCCCccccccccccccCCCCcEEEEEecCc----ce--eeeEEEecccceeEEEEe
Q 000725 947 RSCALFTPDGQYLVLLDSMKTPYCREGRSDCLCSTCTSHRLDENAVKIVKVKPG----YV--SVVAKLKTDDCVQCILVC 1020 (1329)
Q Consensus 947 rsglqFTPDGQ~LvLlgsik~p~CR~~~~dC~Cs~C~~s~seDNtVKIv~V~~G----~v--sll~kL~~h~sV~cIlVc 1020 (1329)
-.+++|+|||++|+ +++.|++||||+.... .. .++..+.++..|.++.|+
T Consensus 486 V~~i~fs~dg~~la------------------------tgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~ 541 (793)
T PLN00181 486 VCAIGFDRDGEFFA------------------------TAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWN 541 (793)
T ss_pred EEEEEECCCCCEEE------------------------EEeCCCEEEEEECCcccccccccccceEEecccCceeeEEec
Confidence 45799999999999 9999999999997542 11 245667777889999997
Q ss_pred --cCCeEEEecCCCeEEEEeccCcceEEEeeeeecCCCCcccceeEEEecC-CCCCeeEecCCCccEEEEEccccceeee
Q 000725 1021 --EPKHLIAVGESGKLHLWEMNSSWSAQVEECIIPINDCIYPCIVEMKRIP-KCAPLVVGHNGFGEFGIWDISKRVLVSR 1097 (1329)
Q Consensus 1021 --DpnhLVSaSdDGkL~IWDM~SgWsm~tee~Vi~~n~~v~p~I~elKrFp-kss~lIVTgSGDgtf~LWDIskg~llqs 1097 (1329)
++++|++++.||+|+|||+.++-...... +|...|..+ .|. .++.+|++|+.||+++|||+.+++++.+
T Consensus 542 ~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~-------~H~~~V~~l-~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~ 613 (793)
T PLN00181 542 SYIKSQVASSNFEGVVQVWDVARSQLVTEMK-------EHEKRVWSI-DYSSADPTLLASGSDDGSVKLWSINQGVSIGT 613 (793)
T ss_pred cCCCCEEEEEeCCCeEEEEECCCCeEEEEec-------CCCCCEEEE-EEcCCCCCEEEEEcCCCEEEEEECCCCcEEEE
Confidence 67999999999999999999987777666 899999999 786 4789999999999999999999999999
Q ss_pred eccCccceeE--ecc-cc----ccccccCcceEECcchhhh---ccccccccccCCCceeecCCCCccceEEEEeeccCc
Q 000725 1098 FSAARASIYQ--FFP-IN----LFSWQRNGSVSMDASLELT---NTATTSLFSKHSEKSSFCPSVGEDSAIWLLVSTISD 1167 (1329)
Q Consensus 1098 F~ahs~sV~s--fsP-~~----s~S~d~~v~tfd~~s~d~~---leatv~~fSgdvn~VsF~P~sGeD~AiwLLVST~Sd 1167 (1329)
+..| ..|++ |.| .+ +++.|+.|++|+....... +.++..++.. +.|.+ +.+|++++.+.
T Consensus 614 ~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~----v~f~~------~~~lvs~s~D~ 682 (793)
T PLN00181 614 IKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSY----VRFVD------SSTLVSSSTDN 682 (793)
T ss_pred EecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEE----EEEeC------CCEEEEEECCC
Confidence 9876 45666 544 44 7899999999999876532 2455555555 88865 45788888888
Q ss_pred cchhhcccc----------cccCCCCcceeEEEeeeccceecCCCCCCCceeeecCCCeEEeecCCCeEEEEEcccccee
Q 000725 1168 SDAQHNCMS----------RDCQKNPVRFWRLALLVKNRVILGSPLDPRASAIGASSGLGIIGTNDGLVYAWELSSGNKL 1237 (1329)
Q Consensus 1168 d~t~~Dlra----------~~~~gH~n~~wRLALl~K~siI~Gs~ldpra~afs~SG~~gfaGT~DGlVYmWDLstG~kL 1237 (1329)
..++||++. ..+.+|.+..+. ++++++|+++++|+.||.|++||...+..+
T Consensus 683 ~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~-------------------v~~s~~~~~lasgs~D~~v~iw~~~~~~~~ 743 (793)
T PLN00181 683 TLKLWDLSMSISGINETPLHSFMGHTNVKNF-------------------VGLSVSDGYIATGSETNEVFVYHKAFPMPV 743 (793)
T ss_pred EEEEEeCCCCccccCCcceEEEcCCCCCeeE-------------------EEEcCCCCEEEEEeCCCEEEEEECCCCCce
Confidence 999999973 244555544443 678899999999999999999998776544
Q ss_pred ee-------------eecccCceEEEEEecCCCCceEEEecCCCCCCccccCCCCCCCCcEEEeee
Q 000725 1238 GI-------------LHHFKGGTVSCIATDDSGLQALAVAGDGPDGGRRQRDPRHGQNDHVRIWKM 1290 (1329)
Q Consensus 1238 ~t-------------L~~Heg~rVSCVA~dps~p~~~AsA~d~~d~~~r~~~~~~s~D~~VRiW~~ 1290 (1329)
.. +..|+. .|++|+.+|.+.. +++| +.||+|+||+|
T Consensus 744 ~s~~~~~~~~~~~~~~~~~~~-~V~~v~ws~~~~~-lva~---------------~~dG~I~i~~~ 792 (793)
T PLN00181 744 LSYKFKTIDPVSGLEVDDASQ-FISSVCWRGQSST-LVAA---------------NSTGNIKILEM 792 (793)
T ss_pred EEEecccCCcccccccCCCCc-EEEEEEEcCCCCe-EEEe---------------cCCCcEEEEec
Confidence 22 234555 7999999987765 7777 67888999987
No 8
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=2.1e-26 Score=256.18 Aligned_cols=279 Identities=16% Similarity=0.184 Sum_probs=227.1
Q ss_pred ccccccceeeecCCCcEEEEecCccCccccCCCccccccccccccCCCCcEEEEE-ecCcceeeeEEEecc-cceeEEEE
Q 000725 942 EIALERSCALFTPDGQYLVLLDSMKTPYCREGRSDCLCSTCTSHRLDENAVKIVK-VKPGYVSVVAKLKTD-DCVQCILV 1019 (1329)
Q Consensus 942 ~~~~ersglqFTPDGQ~LvLlgsik~p~CR~~~~dC~Cs~C~~s~seDNtVKIv~-V~~G~vsll~kL~~h-~sV~cIlV 1019 (1329)
+-+=|-|=++|+++|.||+ ++|.|.|.-||+ +.-+.+++++||.+| .+|.-|.|
T Consensus 222 ~htdEVWfl~FS~nGkyLA------------------------saSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~w 277 (519)
T KOG0293|consen 222 DHTDEVWFLQFSHNGKYLA------------------------SASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMW 277 (519)
T ss_pred hCCCcEEEEEEcCCCeeEe------------------------eccCCceEEEEEEecCcceeeeeeeecccCceEEEEE
Confidence 3344889999999999999 999999999999 566678999999999 99999999
Q ss_pred e-cCCeEEEecCCCeEEEEeccCcceEEEeeeeecCCCCcccceeEEEecCCCCCeeEecCCCccEEEEEccccceeeee
Q 000725 1020 C-EPKHLIAVGESGKLHLWEMNSSWSAQVEECIIPINDCIYPCIVEMKRIPKCAPLVVGHNGFGEFGIWDISKRVLVSRF 1098 (1329)
Q Consensus 1020 c-DpnhLVSaSdDGkL~IWDM~SgWsm~tee~Vi~~n~~v~p~I~elKrFpkss~lIVTgSGDgtf~LWDIskg~llqsF 1098 (1329)
+ |-|||+|+|-|-.|.+||+.||-....+. + +++-+..+. ...+++..+|+||-|++|.+||.. |+.+-..
T Consensus 278 SPDdryLlaCg~~e~~~lwDv~tgd~~~~y~-----~-~~~~S~~sc-~W~pDg~~~V~Gs~dr~i~~wdlD-gn~~~~W 349 (519)
T KOG0293|consen 278 SPDDRYLLACGFDEVLSLWDVDTGDLRHLYP-----S-GLGFSVSSC-AWCPDGFRFVTGSPDRTIIMWDLD-GNILGNW 349 (519)
T ss_pred CCCCCeEEecCchHheeeccCCcchhhhhcc-----c-CcCCCccee-EEccCCceeEecCCCCcEEEecCC-cchhhcc
Confidence 9 99999999999999999999998777665 1 244444444 566789999999999999999986 4444444
Q ss_pred ccCccc-eeE--ecccc----ccccccCcceEECcchhhh-ccccccccccCCCceeecCCCCccceEEEEeeccCccch
Q 000725 1099 SAARAS-IYQ--FFPIN----LFSWQRNGSVSMDASLELT-NTATTSLFSKHSEKSSFCPSVGEDSAIWLLVSTISDSDA 1170 (1329)
Q Consensus 1099 ~ahs~s-V~s--fsP~~----s~S~d~~v~tfd~~s~d~~-leatv~~fSgdvn~VsF~P~sGeD~AiwLLVST~Sdd~t 1170 (1329)
++-... |+. +.|++ +--.|..|++|....-.++ +..+-+++.+ .+.+- | ++.+||.-.+....
T Consensus 350 ~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its----~~iS~----d-~k~~LvnL~~qei~ 420 (519)
T KOG0293|consen 350 EGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITS----FSISK----D-GKLALVNLQDQEIH 420 (519)
T ss_pred cccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeE----EEEcC----C-CcEEEEEcccCeeE
Confidence 444332 222 77777 3346777777776665555 4455666666 55553 7 89999999999999
Q ss_pred hhccc----ccccCCCCcceeEEEeeeccceecCCCCCCCceeeecCCCeEEeecCCCeEEEEEccccceeeeeecccCc
Q 000725 1171 QHNCM----SRDCQKNPVRFWRLALLVKNRVILGSPLDPRASAIGASSGLGIIGTNDGLVYAWELSSGNKLGILHHFKGG 1246 (1329)
Q Consensus 1171 ~~Dlr----a~~~~gH~n~~wRLALl~K~siI~Gs~ldpra~afs~SG~~gfaGT~DGlVYmWDLstG~kL~tL~~Heg~ 1246 (1329)
+||+. -..|.||....+-+. +|.-+.....+++||+|+.||+|+..+|+-+..|.||..
T Consensus 421 LWDl~e~~lv~kY~Ghkq~~fiIr----------------SCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~- 483 (519)
T KOG0293|consen 421 LWDLEENKLVRKYFGHKQGHFIIR----------------SCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSK- 483 (519)
T ss_pred EeecchhhHHHHhhcccccceEEE----------------eccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcc-
Confidence 99999 678999999999866 255556669999999999999999999999999999999
Q ss_pred eEEEEEecCCCCceEEEecCCCCCCccccCCCCCCCCcEEEeeeCCC
Q 000725 1247 TVSCIATDDSGLQALAVAGDGPDGGRRQRDPRHGQNDHVRIWKMDPN 1293 (1329)
Q Consensus 1247 rVSCVA~dps~p~~~AsA~d~~d~~~r~~~~~~s~D~~VRiW~~~~~ 1293 (1329)
.|-|||..|..|.-+|+| |-|||||||.-.++
T Consensus 484 ~vNcVswNP~~p~m~ASa---------------sDDgtIRIWg~~~~ 515 (519)
T KOG0293|consen 484 TVNCVSWNPADPEMFASA---------------SDDGTIRIWGPSDN 515 (519)
T ss_pred eeeEEecCCCCHHHhhcc---------------CCCCeEEEecCCcc
Confidence 999999999999999999 55788888877665
No 9
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.94 E-value=4.5e-27 Score=264.57 Aligned_cols=266 Identities=14% Similarity=0.156 Sum_probs=232.9
Q ss_pred cccceeeecC-CCcEEEEecCccCccccCCCccccccccccccCCCCcEEEEEecC-cceeeeEEEecc-cceeEEEEe-
Q 000725 945 LERSCALFTP-DGQYLVLLDSMKTPYCREGRSDCLCSTCTSHRLDENAVKIVKVKP-GYVSVVAKLKTD-DCVQCILVC- 1020 (1329)
Q Consensus 945 ~ersglqFTP-DGQ~LvLlgsik~p~CR~~~~dC~Cs~C~~s~seDNtVKIv~V~~-G~vsll~kL~~h-~sV~cIlVc- 1020 (1329)
-.-+.++|-| -|-+|+ ++|.|++||||+|-. |. ++.||++| ..|+++.++
T Consensus 215 kgvsai~~fp~~~hLlL------------------------S~gmD~~vklW~vy~~~~--~lrtf~gH~k~Vrd~~~s~ 268 (503)
T KOG0282|consen 215 KGVSAIQWFPKKGHLLL------------------------SGGMDGLVKLWNVYDDRR--CLRTFKGHRKPVRDASFNN 268 (503)
T ss_pred cccchhhhccceeeEEE------------------------ecCCCceEEEEEEecCcc--eehhhhcchhhhhhhhccc
Confidence 3568899999 888888 999999999999877 55 99999999 999999999
Q ss_pred cCCeEEEecCCCeEEEEeccCcceEEEeeeeecCCCCcccceeEEEecCCCC-CeeEecCCCccEEEEEccccceeeeec
Q 000725 1021 EPKHLIAVGESGKLHLWEMNSSWSAQVEECIIPINDCIYPCIVEMKRIPKCA-PLVVGHNGFGEFGIWDISKRVLVSRFS 1099 (1329)
Q Consensus 1021 DpnhLVSaSdDGkL~IWDM~SgWsm~tee~Vi~~n~~v~p~I~elKrFpkss-~lIVTgSGDgtf~LWDIskg~llqsF~ 1099 (1329)
+++.+-|+|=|+.|++||..||-+..++. .+ ..+.+| .|.+++ +.++.|..|+.|+.|||.+|..+|.+.
T Consensus 269 ~g~~fLS~sfD~~lKlwDtETG~~~~~f~-----~~---~~~~cv-kf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd 339 (503)
T KOG0282|consen 269 CGTSFLSASFDRFLKLWDTETGQVLSRFH-----LD---KVPTCV-KFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYD 339 (503)
T ss_pred cCCeeeeeecceeeeeeccccceEEEEEe-----cC---CCceee-ecCCCCCcEEEEecCCCcEEEEeccchHHHHHHH
Confidence 99999999999999999999999999988 12 224455 677766 999999999999999999999999999
Q ss_pred cCccceeE--ecccc----ccccccCcceEECcchhhh-c----cccccccccCCCceeecCCCCccceEEEEeeccCcc
Q 000725 1100 AARASIYQ--FFPIN----LFSWQRNGSVSMDASLELT-N----TATTSLFSKHSEKSSFCPSVGEDSAIWLLVSTISDS 1168 (1329)
Q Consensus 1100 ahs~sV~s--fsP~~----s~S~d~~v~tfd~~s~d~~-l----eatv~~fSgdvn~VsF~P~sGeD~AiwLLVST~Sdd 1168 (1329)
.|-..|.. |.|.+ +.|=|+.+++|+.+..-.. + +++.++. +..+| . +.|+..=++++-
T Consensus 340 ~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~------~~~~P----~-~~~~~aQs~dN~ 408 (503)
T KOG0282|consen 340 RHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPC------LTLHP----N-GKWFAAQSMDNY 408 (503)
T ss_pred hhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcc------eecCC----C-CCeehhhccCce
Confidence 99999999 99998 7788999999999887666 2 3444443 55888 3 788888888888
Q ss_pred chhhccc-------ccccCCCCcceeEEEeeeccceecCCCCCCCceeeecCCCeEEeecCCCeEEEEEccccceeeeee
Q 000725 1169 DAQHNCM-------SRDCQKNPVRFWRLALLVKNRVILGSPLDPRASAIGASSGLGIIGTNDGLVYAWELSSGNKLGILH 1241 (1329)
Q Consensus 1169 ~t~~Dlr-------a~~~~gH~n~~wRLALl~K~siI~Gs~ldpra~afs~SG~~gfaGT~DGlVYmWDLstG~kL~tL~ 1241 (1329)
+.+|-.. -+.|.||.++-|.+. +.||+.|+++++|..||.|||||.-|.+.+.+|+
T Consensus 409 i~ifs~~~~~r~nkkK~feGh~vaGys~~-----------------v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lk 471 (503)
T KOG0282|consen 409 IAIFSTVPPFRLNKKKRFEGHSVAGYSCQ-----------------VDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLK 471 (503)
T ss_pred EEEEecccccccCHhhhhcceeccCceee-----------------EEEcCCCCeEEeecCCccEEEeechhhhhhhccc
Confidence 8885544 678999999999987 8999999999999999999999999999999999
Q ss_pred cccCceEEEEEecCCCCceEEEecCCCCCCccccCCCCCCCCcEEEee
Q 000725 1242 HFKGGTVSCIATDDSGLQALAVAGDGPDGGRRQRDPRHGQNDHVRIWK 1289 (1329)
Q Consensus 1242 ~Heg~rVSCVA~dps~p~~~AsA~d~~d~~~r~~~~~~s~D~~VRiW~ 1289 (1329)
+|++ .|+.+..||-.+-.+|+| ||||+|+||+
T Consensus 472 ah~~-~ci~v~wHP~e~Skvat~---------------~w~G~Ikiwd 503 (503)
T KOG0282|consen 472 AHDQ-PCIGVDWHPVEPSKVATC---------------GWDGLIKIWD 503 (503)
T ss_pred cCCc-ceEEEEecCCCcceeEec---------------ccCceeEecC
Confidence 9987 799999999998889999 7888888884
No 10
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.93 E-value=6.9e-25 Score=241.47 Aligned_cols=265 Identities=15% Similarity=0.202 Sum_probs=226.3
Q ss_pred ceeeecCCCcEEEEecCccCccccCCCccccccccccccCCCCcEEEEEecCcceeeeEEEecc-cceeEEEEe-cCCeE
Q 000725 948 SCALFTPDGQYLVLLDSMKTPYCREGRSDCLCSTCTSHRLDENAVKIVKVKPGYVSVVAKLKTD-DCVQCILVC-EPKHL 1025 (1329)
Q Consensus 948 sglqFTPDGQ~LvLlgsik~p~CR~~~~dC~Cs~C~~s~seDNtVKIv~V~~G~vsll~kL~~h-~sV~cIlVc-DpnhL 1025 (1329)
-+|++-|--++++ ++|.|+|+||||+++|. ++.+|.|| ..|+.|.|+ ---||
T Consensus 155 r~vavdP~n~wf~------------------------tgs~DrtikIwDlatg~--LkltltGhi~~vr~vavS~rHpYl 208 (460)
T KOG0285|consen 155 RSVAVDPGNEWFA------------------------TGSADRTIKIWDLATGQ--LKLTLTGHIETVRGVAVSKRHPYL 208 (460)
T ss_pred EEEeeCCCceeEE------------------------ecCCCceeEEEEcccCe--EEEeecchhheeeeeeecccCceE
Confidence 3689999999999 99999999999999999 99999999 999999999 67799
Q ss_pred EEecCCCeEEEEeccCcceEEEeeeeecCCCCcccceeEEEecCCCCCeeEecCCCccEEEEEccccceeeeeccCccce
Q 000725 1026 IAVGESGKLHLWEMNSSWSAQVEECIIPINDCIYPCIVEMKRIPKCAPLVVGHNGFGEFGIWDISKRVLVSRFSAARASI 1105 (1329)
Q Consensus 1026 VSaSdDGkL~IWDM~SgWsm~tee~Vi~~n~~v~p~I~elKrFpkss~lIVTgSGDgtf~LWDIskg~llqsF~ahs~sV 1105 (1329)
.|+++|++|+-||+...=+++-++ ||.+.+++| ...+-..+|+||+-|.++++|||+++.-+.++.||.++|
T Consensus 209 Fs~gedk~VKCwDLe~nkvIR~Yh-------GHlS~V~~L-~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V 280 (460)
T KOG0285|consen 209 FSAGEDKQVKCWDLEYNKVIRHYH-------GHLSGVYCL-DLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPV 280 (460)
T ss_pred EEecCCCeeEEEechhhhhHHHhc-------cccceeEEE-eccccceeEEecCCcceEEEeeecccceEEEecCCCCcc
Confidence 999999999999999999999888 999999999 667778999999999999999999999999999999999
Q ss_pred eE--ecccc----ccccccCcceEECcchhhh--ccccccccccCCCceeecCCCCccceEEEEeeccCccchhhccc--
Q 000725 1106 YQ--FFPIN----LFSWQRNGSVSMDASLELT--NTATTSLFSKHSEKSSFCPSVGEDSAIWLLVSTISDSDAQHNCM-- 1175 (1329)
Q Consensus 1106 ~s--fsP~~----s~S~d~~v~tfd~~s~d~~--leatv~~fSgdvn~VsF~P~sGeD~AiwLLVST~Sdd~t~~Dlr-- 1175 (1329)
.+ +.|.. ++|.|++|+.||.+.+.-+ +-.++-.+.. .+.+| . -.+++|...|.++||++-
T Consensus 281 ~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvra----l~lhP-~-----e~~fASas~dnik~w~~p~g 350 (460)
T KOG0285|consen 281 ASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRA----LCLHP-K-----ENLFASASPDNIKQWKLPEG 350 (460)
T ss_pred eeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeE----EecCC-c-----hhhhhccCCccceeccCCcc
Confidence 99 55555 9999999999999999877 5567777777 89999 2 345668889999999998
Q ss_pred --ccccCCCCcceeEEEeeeccceecCCCCCCCceeeecCCCeEEeecCCCeEEEEEccccceeeeeec---------cc
Q 000725 1176 --SRDCQKNPVRFWRLALLVKNRVILGSPLDPRASAIGASSGLGIIGTNDGLVYAWELSSGNKLGILHH---------FK 1244 (1329)
Q Consensus 1176 --a~~~~gH~n~~wRLALl~K~siI~Gs~ldpra~afs~SG~~gfaGT~DGlVYmWDLstG~kL~tL~~---------He 1244 (1329)
+..+++|..-.=.|+ +.+.+++++|++.|.+..||.-+|-..+.++. -.
T Consensus 351 ~f~~nlsgh~~iintl~--------------------~nsD~v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEa 410 (460)
T KOG0285|consen 351 EFLQNLSGHNAIINTLS--------------------VNSDGVLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEA 410 (460)
T ss_pred chhhccccccceeeeee--------------------eccCceEEEcCCceEEEEEecCcCcccccccccccCCcccccc
Confidence 333566655444433 57889999999999999999999988877743 22
Q ss_pred CceEEEEEecCCCCceEEEecCCCCCCccccCCCCCCCCcEEEeeeCCCc
Q 000725 1245 GGTVSCIATDDSGLQALAVAGDGPDGGRRQRDPRHGQNDHVRIWKMDPNL 1294 (1329)
Q Consensus 1245 g~rVSCVA~dps~p~~~AsA~d~~d~~~r~~~~~~s~D~~VRiW~~~~~~ 1294 (1329)
| |.|-++|-++.+ +.+| ..|.+|++|+.|.+.
T Consensus 411 g--I~as~fDktg~r-lit~---------------eadKtIk~~keDe~a 442 (460)
T KOG0285|consen 411 G--IFASCFDKTGSR-LITG---------------EADKTIKMYKEDEHA 442 (460)
T ss_pred c--eeEEeecccCce-EEec---------------cCCcceEEEeccccc
Confidence 2 555666666666 6666 899999999998764
No 11
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.92 E-value=8.3e-24 Score=247.33 Aligned_cols=257 Identities=18% Similarity=0.247 Sum_probs=211.1
Q ss_pred EeeeCCCCCCCCceeecccccccccccccccccccccceeeecCCCcEEEEecCccCccccCCCccccccccccccCCCC
Q 000725 911 TVDIQEPRVGNPSCVGHTSVMLPFLKDNFGREIALERSCALFTPDGQYLVLLDSMKTPYCREGRSDCLCSTCTSHRLDEN 990 (1329)
Q Consensus 911 ki~i~~~~~~~p~~vg~t~~llp~~~~~~~~~~~~ersglqFTPDGQ~LvLlgsik~p~CR~~~~dC~Cs~C~~s~seDN 990 (1329)
++.+. +...|+++=||-. +....-+++.||+|+..|| -|+.|-
T Consensus 358 r~~l~--~~~lpSic~YT~~-----------nt~~~v~ca~fSddssmlA------------------------~Gf~dS 400 (707)
T KOG0263|consen 358 RVKLG--RNSLPSICMYTFH-----------NTYQGVTCAEFSDDSSMLA------------------------CGFVDS 400 (707)
T ss_pred HhhcC--CCCCCcEEEEEEE-----------EcCCcceeEeecCCcchhh------------------------cccccc
Confidence 44444 6677777777642 3345668999999999999 789999
Q ss_pred cEEEEEecCc---------ce--------------------eeeEEEecc-cceeEEEEe-cCCeEEEecCCCeEEEEec
Q 000725 991 AVKIVKVKPG---------YV--------------------SVVAKLKTD-DCVQCILVC-EPKHLIAVGESGKLHLWEM 1039 (1329)
Q Consensus 991 tVKIv~V~~G---------~v--------------------sll~kL~~h-~sV~cIlVc-DpnhLVSaSdDGkL~IWDM 1039 (1329)
.|++|++..- .+ ....+|.|| +.|-..-+. |.++|+|+|+|+++++|.|
T Consensus 401 ~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl 480 (707)
T KOG0263|consen 401 SVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSL 480 (707)
T ss_pred EEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeeeecccccceeeccCCcceeeeec
Confidence 9999998731 11 234679999 999999999 9999999999999999999
Q ss_pred cCcceEEEeeeeecCCCCcccceeEEEecCCCCCeeEecCCCccEEEEEccccceeeeeccCccceeE--ecccc----c
Q 000725 1040 NSSWSAQVEECIIPINDCIYPCIVEMKRIPKCAPLVVGHNGFGEFGIWDISKRVLVSRFSAARASIYQ--FFPIN----L 1113 (1329)
Q Consensus 1040 ~SgWsm~tee~Vi~~n~~v~p~I~elKrFpkss~lIVTgSGDgtf~LWDIskg~llqsF~ahs~sV~s--fsP~~----s 1113 (1329)
.| |+....| +||-..++.| +|.+-+...+|+|+|+|=+||....-..+..|.+|-++|-+ |-|.+ +
T Consensus 481 ~t-~s~~V~y------~GH~~PVwdV-~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aT 552 (707)
T KOG0263|consen 481 DT-WSCLVIY------KGHLAPVWDV-QFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVAT 552 (707)
T ss_pred cc-ceeEEEe------cCCCcceeeE-EecCCceEEEecCCCceeeeeecccCCchhhhcccccccceEEECCccccccc
Confidence 98 5555555 4899999999 99999999999999999999999999999999999999876 77777 6
Q ss_pred cccccCcceEECcchhhhccccccccccCCCceeecCCCCccceEEEEeeccCccchhhcccccccCCCCcceeEEEeee
Q 000725 1114 FSWQRNGSVSMDASLELTNTATTSLFSKHSEKSSFCPSVGEDSAIWLLVSTISDSDAQHNCMSRDCQKNPVRFWRLALLV 1193 (1329)
Q Consensus 1114 ~S~d~~v~tfd~~s~d~~leatv~~fSgdvn~VsF~P~sGeD~AiwLLVST~Sdd~t~~Dlra~~~~gH~n~~wRLALl~ 1193 (1329)
+|-|.+||+||+.++...| -|.||+...-.
T Consensus 553 GSsD~tVRlWDv~~G~~VR---------------------------------------------iF~GH~~~V~a----- 582 (707)
T KOG0263|consen 553 GSSDRTVRLWDVSTGNSVR---------------------------------------------IFTGHKGPVTA----- 582 (707)
T ss_pred CCCCceEEEEEcCCCcEEE---------------------------------------------EecCCCCceEE-----
Confidence 7777777777776654432 23445554444
Q ss_pred ccceecCCCCCCCceeeecCCCeEEeecCCCeEEEEEccccceeeeeecccCceEEEEEecCCCCceEEEecCCCCCCcc
Q 000725 1194 KNRVILGSPLDPRASAIGASSGLGIIGTNDGLVYAWELSSGNKLGILHHFKGGTVSCIATDDSGLQALAVAGDGPDGGRR 1273 (1329)
Q Consensus 1194 K~siI~Gs~ldpra~afs~SG~~gfaGT~DGlVYmWDLstG~kL~tL~~Heg~rVSCVA~dps~p~~~AsA~d~~d~~~r 1273 (1329)
++|+|+|+|+++|++||+|.+||+.+|+.+..|.+|+| .|.+|.++..+.. +|+|
T Consensus 583 --------------l~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~-ti~SlsFS~dg~v-Lasg--------- 637 (707)
T KOG0263|consen 583 --------------LAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTG-TIYSLSFSRDGNV-LASG--------- 637 (707)
T ss_pred --------------EEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccC-ceeEEEEecCCCE-EEec---------
Confidence 67899999999999999999999999999999999999 8999999965554 8888
Q ss_pred ccCCCCCCCCcEEEeeeCCC
Q 000725 1274 QRDPRHGQNDHVRIWKMDPN 1293 (1329)
Q Consensus 1274 ~~~~~~s~D~~VRiW~~~~~ 1293 (1329)
|.|.+||+|+...-
T Consensus 638 ------g~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 638 ------GADNSVRLWDLTKV 651 (707)
T ss_pred ------CCCCeEEEEEchhh
Confidence 88999999987643
No 12
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.91 E-value=1.4e-23 Score=227.52 Aligned_cols=262 Identities=15% Similarity=0.161 Sum_probs=219.7
Q ss_pred ccceeeecCCCcEEEEecCccCccccCCCccccccccccccCCCCcEEEEEecCcceeeeEEEecc-cceeEEEEe-cCC
Q 000725 946 ERSCALFTPDGQYLVLLDSMKTPYCREGRSDCLCSTCTSHRLDENAVKIVKVKPGYVSVVAKLKTD-DCVQCILVC-EPK 1023 (1329)
Q Consensus 946 ersglqFTPDGQ~LvLlgsik~p~CR~~~~dC~Cs~C~~s~seDNtVKIv~V~~G~vsll~kL~~h-~sV~cIlVc-Dpn 1023 (1329)
|...++|+|||-+++ +++-|..|-+|+|.. -.+=.-+|++| +.|-.+.+. |++
T Consensus 49 eI~~~~F~P~gs~~a------------------------SgG~Dr~I~LWnv~g-dceN~~~lkgHsgAVM~l~~~~d~s 103 (338)
T KOG0265|consen 49 EIYTIKFHPDGSCFA------------------------SGGSDRAIVLWNVYG-DCENFWVLKGHSGAVMELHGMRDGS 103 (338)
T ss_pred eEEEEEECCCCCeEe------------------------ecCCcceEEEEeccc-cccceeeeccccceeEeeeeccCCC
Confidence 567799999999999 999999999999853 44667889999 999999999 999
Q ss_pred eEEEecCCCeEEEEeccCcceEEEeeeeecCCCCcccceeEEE--ecCCCCCeeEecCCCccEEEEEccccceeeeeccC
Q 000725 1024 HLIAVGESGKLHLWEMNSSWSAQVEECIIPINDCIYPCIVEMK--RIPKCAPLVVGHNGFGEFGIWDISKRVLVSRFSAA 1101 (1329)
Q Consensus 1024 hLVSaSdDGkL~IWDM~SgWsm~tee~Vi~~n~~v~p~I~elK--rFpkss~lIVTgSGDgtf~LWDIskg~llqsF~ah 1101 (1329)
||+|+|.|++|..|||.||-+++... +|+.++..+- |+ ..++|.||+-|+|++|||+++..++++|+..
T Consensus 104 ~i~S~gtDk~v~~wD~~tG~~~rk~k-------~h~~~vNs~~p~rr--g~~lv~SgsdD~t~kl~D~R~k~~~~t~~~k 174 (338)
T KOG0265|consen 104 HILSCGTDKTVRGWDAETGKRIRKHK-------GHTSFVNSLDPSRR--GPQLVCSGSDDGTLKLWDIRKKEAIKTFENK 174 (338)
T ss_pred EEEEecCCceEEEEecccceeeehhc-------cccceeeecCcccc--CCeEEEecCCCceEEEEeecccchhhccccc
Confidence 99999999999999999999999998 8888777761 22 3589999999999999999999999999532
Q ss_pred ccceeE--ecccc----ccccccCcceEECcchhhh--ccccccccccCCCceeecCCCCccceEEEEeeccCccchhhc
Q 000725 1102 RASIYQ--FFPIN----LFSWQRNGSVSMDASLELT--NTATTSLFSKHSEKSSFCPSVGEDSAIWLLVSTISDSDAQHN 1173 (1329)
Q Consensus 1102 s~sV~s--fsP~~----s~S~d~~v~tfd~~s~d~~--leatv~~fSgdvn~VsF~P~sGeD~AiwLLVST~Sdd~t~~D 1173 (1329)
.-+++ |...+ ++-.|+.|++||.+..|.. +.++.-++.+ ++.+| + +..||.=+++.+.+.||
T Consensus 175 -yqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~----lsls~----~-gs~llsnsMd~tvrvwd 244 (338)
T KOG0265|consen 175 -YQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITG----LSLSR----Y-GSFLLSNSMDNTVRVWD 244 (338)
T ss_pred -eeEEEEEecccccceeeccccCceeeeccccCcceEEeecccCceee----EEecc----C-CCccccccccceEEEEE
Confidence 23344 66666 7778999999999999888 5677777777 88888 6 78899889999999999
Q ss_pred cc----ccccCCCCcceeEEEeeeccceecCCCCCCCceeeecCCCeEEeecCCCeEEEEEccccceeeeeecccCceEE
Q 000725 1174 CM----SRDCQKNPVRFWRLALLVKNRVILGSPLDPRASAIGASSGLGIIGTNDGLVYAWELSSGNKLGILHHFKGGTVS 1249 (1329)
Q Consensus 1174 lr----a~~~~gH~n~~wRLALl~K~siI~Gs~ldpra~afs~SG~~gfaGT~DGlVYmWDLstG~kL~tL~~Heg~rVS 1249 (1329)
+| +++ +|..+.-..-.|+- .-=-|+-+++++.+-+|+-|+-||+||..+-..+-.|-||.| .|-
T Consensus 245 ~rp~~p~~R---------~v~if~g~~hnfek--nlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~g-svn 312 (338)
T KOG0265|consen 245 VRPFAPSQR---------CVKIFQGHIHNFEK--NLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYG-SVN 312 (338)
T ss_pred ecccCCCCc---------eEEEeecchhhhhh--hcceeeccCCCCccccccccceEEEeecccccEEEEcCCcce-eEE
Confidence 99 332 23333322222222 223478899999999999999999999999999999999999 899
Q ss_pred EEEecCCCCceEEEe
Q 000725 1250 CIATDDSGLQALAVA 1264 (1329)
Q Consensus 1250 CVA~dps~p~~~AsA 1264 (1329)
|+++||+.|. |.+|
T Consensus 313 ~~~Fhp~e~i-ils~ 326 (338)
T KOG0265|consen 313 EVDFHPTEPI-ILSC 326 (338)
T ss_pred EeeecCCCcE-EEEe
Confidence 9999999999 8888
No 13
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.91 E-value=7.6e-22 Score=186.41 Aligned_cols=269 Identities=13% Similarity=0.170 Sum_probs=204.3
Q ss_pred cccccceeeeeeccCCeEEEEEEeccccccceEEEEEEeeeCCCCCCCCceeecccccccccccccccccccccceeeec
Q 000725 874 FFPLPILSVLLSTTGDKIYVCVSCGFLVDKKRTLFIYTVDIQEPRVGNPSCVGHTSVMLPFLKDNFGREIALERSCALFT 953 (1329)
Q Consensus 874 ~HpmpVlsv~l~t~~~ei~IcVlCG~L~~~~r~Lf~Yki~i~~~~~~~p~~vg~t~~llp~~~~~~~~~~~~ersglqFT 953 (1329)
.|+-||.++...-.++.|.++ ..+..+++|.+.-.... -.+-+|. .....+.|+
T Consensus 7 ~h~~~i~~~~~~~~~~~l~~~-------~~~g~i~i~~~~~~~~~---~~~~~~~----------------~~i~~~~~~ 60 (289)
T cd00200 7 GHTGGVTCVAFSPDGKLLATG-------SGDGTIKVWDLETGELL---RTLKGHT----------------GPVRDVAAS 60 (289)
T ss_pred ccCCCEEEEEEcCCCCEEEEe-------ecCcEEEEEEeeCCCcE---EEEecCC----------------cceeEEEEC
Confidence 488899999988776544322 23678899987643200 0111111 112689999
Q ss_pred CCCcEEEEecCccCccccCCCccccccccccccCCCCcEEEEEecCcceeeeEEEecc-cceeEEEEe-cCCeEEEecCC
Q 000725 954 PDGQYLVLLDSMKTPYCREGRSDCLCSTCTSHRLDENAVKIVKVKPGYVSVVAKLKTD-DCVQCILVC-EPKHLIAVGES 1031 (1329)
Q Consensus 954 PDGQ~LvLlgsik~p~CR~~~~dC~Cs~C~~s~seDNtVKIv~V~~G~vsll~kL~~h-~sV~cIlVc-DpnhLVSaSdD 1031 (1329)
|||++|+ .++.|+.|+||++..+. .+.++.+| ..+.|+.+. +.+.+++++.|
T Consensus 61 ~~~~~l~------------------------~~~~~~~i~i~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 114 (289)
T cd00200 61 ADGTYLA------------------------SGSSDKTIRLWDLETGE--CVRTLTGHTSYVSSVAFSPDGRILSSSSRD 114 (289)
T ss_pred CCCCEEE------------------------EEcCCCeEEEEEcCccc--ceEEEeccCCcEEEEEEcCCCCEEEEecCC
Confidence 9999999 77789999999999986 88899999 589999999 66777777779
Q ss_pred CeEEEEeccCcceEEEeeeeecCCCCcccceeEEEecCCCCCeeEecCCCccEEEEEccccceeeeeccCccceeE--ec
Q 000725 1032 GKLHLWEMNSSWSAQVEECIIPINDCIYPCIVEMKRIPKCAPLVVGHNGFGEFGIWDISKRVLVSRFSAARASIYQ--FF 1109 (1329)
Q Consensus 1032 GkL~IWDM~SgWsm~tee~Vi~~n~~v~p~I~elKrFpkss~lIVTgSGDgtf~LWDIskg~llqsF~ahs~sV~s--fs 1109 (1329)
|.|.+||+.++-...... .|...|..+ .|.+...+|++++.|+.+.+||+.+++.++.|..|...|.+ |.
T Consensus 115 ~~i~~~~~~~~~~~~~~~-------~~~~~i~~~-~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~ 186 (289)
T cd00200 115 KTIKVWDVETGKCLTTLR-------GHTDWVNSV-AFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFS 186 (289)
T ss_pred CeEEEEECCCcEEEEEec-------cCCCcEEEE-EEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEEC
Confidence 999999999765554444 566678888 88888999999999999999999999999999999988887 88
Q ss_pred ccc----ccccccCcceEECcchhhhc--cccccccccCCCceeecCCCCccceEEEEeeccCccchhhccccc----cc
Q 000725 1110 PIN----LFSWQRNGSVSMDASLELTN--TATTSLFSKHSEKSSFCPSVGEDSAIWLLVSTISDSDAQHNCMSR----DC 1179 (1329)
Q Consensus 1110 P~~----s~S~d~~v~tfd~~s~d~~l--eatv~~fSgdvn~VsF~P~sGeD~AiwLLVST~Sdd~t~~Dlra~----~~ 1179 (1329)
|++ .++-++.+++|+........ ..+..++. .+.|.| + ..++.+++.+...+.||+... .+
T Consensus 187 ~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~----~~~~~~----~-~~~~~~~~~~~~i~i~~~~~~~~~~~~ 257 (289)
T cd00200 187 PDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVN----SVAFSP----D-GYLLASGSEDGTIRVWDLRTGECVQTL 257 (289)
T ss_pred CCcCEEEEecCCCcEEEEECCCCceecchhhcCCceE----EEEEcC----C-CcEEEEEcCCCcEEEEEcCCceeEEEc
Confidence 986 55569999999998765552 23333344 499998 5 667776666888888998732 22
Q ss_pred CCCCcceeEEEeeeccceecCCCCCCCceeeecCCCeEEeecCCCeEEEEE
Q 000725 1180 QKNPVRFWRLALLVKNRVILGSPLDPRASAIGASSGLGIIGTNDGLVYAWE 1230 (1329)
Q Consensus 1180 ~gH~n~~wRLALl~K~siI~Gs~ldpra~afs~SG~~gfaGT~DGlVYmWD 1230 (1329)
.+|.. .....+++++|+++++|+.||.|++||
T Consensus 258 ~~~~~-------------------~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 258 SGHTN-------------------SVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred cccCC-------------------cEEEEEECCCCCEEEEecCCCeEEecC
Confidence 23322 234477888899999999999999997
No 14
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.90 E-value=7.8e-23 Score=238.23 Aligned_cols=286 Identities=16% Similarity=0.201 Sum_probs=234.6
Q ss_pred eeeeccCCeEEEE------------------EEeccccccceEEEEE------EeeeCCCCCCCCceeeccccccccccc
Q 000725 882 VLLSTTGDKIYVC------------------VSCGFLVDKKRTLFIY------TVDIQEPRVGNPSCVGHTSVMLPFLKD 937 (1329)
Q Consensus 882 v~l~t~~~ei~Ic------------------VlCG~L~~~~r~Lf~Y------ki~i~~~~~~~p~~vg~t~~llp~~~~ 937 (1329)
+++-|-+++|.++ ..|-||.+.++.|+|= |+. ..+...|--+.|||-++|+-
T Consensus 296 ~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y-~~~~~~c~ii~GH~e~vlSL--- 371 (775)
T KOG0319|consen 296 LLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLY-TLPTSYCQIIPGHTEAVLSL--- 371 (775)
T ss_pred eEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEE-ecCCCceEEEeCchhheeee---
Confidence 4677888888777 4688999999999873 232 55566666788999887753
Q ss_pred ccccccccccceeeecCCCcEEEEecCccCccccCCCccccccccccccCCCCcEEEEEe--cCcceeeeEEEecc-cce
Q 000725 938 NFGREIALERSCALFTPDGQYLVLLDSMKTPYCREGRSDCLCSTCTSHRLDENAVKIVKV--KPGYVSVVAKLKTD-DCV 1014 (1329)
Q Consensus 938 ~~~~~~~~ersglqFTPDGQ~LvLlgsik~p~CR~~~~dC~Cs~C~~s~seDNtVKIv~V--~~G~vsll~kL~~h-~sV 1014 (1329)
.-+-+|-+|+ +||.||+|++|-. +.+...+++.-.+| .+|
T Consensus 372 -------------~~~~~g~lla------------------------t~sKD~svilWr~~~~~~~~~~~a~~~gH~~sv 414 (775)
T KOG0319|consen 372 -------------DVWSSGDLLA------------------------TGSKDKSVILWRLNNNCSKSLCVAQANGHTNSV 414 (775)
T ss_pred -------------eecccCcEEE------------------------EecCCceEEEEEecCCcchhhhhhhhccccccc
Confidence 2345677999 9999999999977 66667889999999 999
Q ss_pred eEEEEe--cCCeEEEecCCCeEEEEeccCcceEEEeeeeec----CCCCcccceeEEEecCCCCCeeEecCCCccEEEEE
Q 000725 1015 QCILVC--EPKHLIAVGESGKLHLWEMNSSWSAQVEECIIP----INDCIYPCIVEMKRIPKCAPLVVGHNGFGEFGIWD 1088 (1329)
Q Consensus 1015 ~cIlVc--DpnhLVSaSdDGkL~IWDM~SgWsm~tee~Vi~----~n~~v~p~I~elKrFpkss~lIVTgSGDgtf~LWD 1088 (1329)
-+|++| -+..+||+|+|++|++|+++- +-.+++-+.. .-.+|.--|.+| .+.+++.+|+|||.|.|.+|||
T Consensus 415 gava~~~~~asffvsvS~D~tlK~W~l~~--s~~~~~~~~~~~~~t~~aHdKdIN~V-aia~ndkLiAT~SqDktaKiW~ 491 (775)
T KOG0319|consen 415 GAVAGSKLGASFFVSVSQDCTLKLWDLPK--SKETAFPIVLTCRYTERAHDKDINCV-AIAPNDKLIATGSQDKTAKIWD 491 (775)
T ss_pred ceeeecccCccEEEEecCCceEEEecCCC--cccccccceehhhHHHHhhcccccce-EecCCCceEEecccccceeeec
Confidence 999999 899999999999999999877 4444443332 333577788999 9999999999999999999999
Q ss_pred ccccceeeeeccCccceeE--ecccc----ccccccCcceEECcchhhhccccccccccCCCceeecCCCCccceEEEEe
Q 000725 1089 ISKRVLVSRFSAARASIYQ--FFPIN----LFSWQRNGSVSMDASLELTNTATTSLFSKHSEKSSFCPSVGEDSAIWLLV 1162 (1329)
Q Consensus 1089 Iskg~llqsF~ahs~sV~s--fsP~~----s~S~d~~v~tfd~~s~d~~leatv~~fSgdvn~VsF~P~sGeD~AiwLLV 1162 (1329)
++.+.++-++.+|.--|++ |+|.. ++|-|.+|++|.+++. |.
T Consensus 492 le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~f-----------SC--------------------- 539 (775)
T KOG0319|consen 492 LEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTF-----------SC--------------------- 539 (775)
T ss_pred ccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccc-----------ee---------------------
Confidence 9999999999999999888 77775 6666666666665432 11
Q ss_pred eccCccchhhcccccccCCCCcceeEEEeeeccceecCCCCCCCceeeecCCCeEEeecCCCeEEEEEccccceeeeeec
Q 000725 1163 STISDSDAQHNCMSRDCQKNPVRFWRLALLVKNRVILGSPLDPRASAIGASSGLGIIGTNDGLVYAWELSSGNKLGILHH 1242 (1329)
Q Consensus 1163 ST~Sdd~t~~Dlra~~~~gH~n~~wRLALl~K~siI~Gs~ldpra~afs~SG~~gfaGT~DGlVYmWDLstG~kL~tL~~ 1242 (1329)
+++|+||.+++-| +.|-..|.-++++..||+|++|++.|+.++.+|.+
T Consensus 540 -------------lkT~eGH~~aVlr-------------------a~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~ 587 (775)
T KOG0319|consen 540 -------------LKTFEGHTSAVLR-------------------ASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDA 587 (775)
T ss_pred -------------eeeecCccceeEe-------------------eeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhh
Confidence 4578889999989 77888999999999999999999999999999999
Q ss_pred ccCceEEEEEecCCCCceEEEecCCCCCCccccCCCCCCCCcEEEeeeCC
Q 000725 1243 FKGGTVSCIATDDSGLQALAVAGDGPDGGRRQRDPRHGQNDHVRIWKMDP 1292 (1329)
Q Consensus 1243 Heg~rVSCVA~dps~p~~~AsA~d~~d~~~r~~~~~~s~D~~VRiW~~~~ 1292 (1329)
|++ ||+.+++.|...- +++| +.|+.|-+|+...
T Consensus 588 H~D-rvWaL~~~~~~~~-~~tg---------------g~Dg~i~~wkD~T 620 (775)
T KOG0319|consen 588 HND-RVWALSVSPLLDM-FVTG---------------GGDGRIIFWKDVT 620 (775)
T ss_pred ccc-eeEEEeecCccce-eEec---------------CCCeEEEEeecCc
Confidence 999 9999999976663 5556 7899999998653
No 15
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.90 E-value=2.2e-23 Score=232.65 Aligned_cols=278 Identities=15% Similarity=0.141 Sum_probs=238.9
Q ss_pred ccceeeeec-ccccceeeeeeccCCeEEEEEEeccccccceEEEEEEeeeCCCCCCCCceeecccccccccccccccccc
Q 000725 866 TFDLMGCYF-FPLPILSVLLSTTGDKIYVCVSCGFLVDKKRTLFIYTVDIQEPRVGNPSCVGHTSVMLPFLKDNFGREIA 944 (1329)
Q Consensus 866 ~~~l~g~y~-HpmpVlsv~l~t~~~ei~IcVlCG~L~~~~r~Lf~Yki~i~~~~~~~p~~vg~t~~llp~~~~~~~~~~~ 944 (1329)
+++|+++-+ -.=|++...+.+.++-|--|-.-|.+ =|+++. +-..--+|.|||.
T Consensus 164 ~~~l~~SQ~gd~rPis~~~fS~ds~~laT~swsG~~-------kvW~~~---~~~~~~~l~gH~~--------------- 218 (459)
T KOG0272|consen 164 SLELVCSQVGDTRPISGCSFSRDSKHLATGSWSGLV-------KVWSVP---QCNLLQTLRGHTS--------------- 218 (459)
T ss_pred hhhhhhhhccCCCcceeeEeecCCCeEEEeecCCce-------eEeecC---CcceeEEEecccc---------------
Confidence 344555433 34689999999988877655555532 233332 1122346788886
Q ss_pred cccceeeecCC--CcEEEEecCccCccccCCCccccccccccccCCCCcEEEEEecCcceeeeEEEecc-cceeEEEEe-
Q 000725 945 LERSCALFTPD--GQYLVLLDSMKTPYCREGRSDCLCSTCTSHRLDENAVKIVKVKPGYVSVVAKLKTD-DCVQCILVC- 1020 (1329)
Q Consensus 945 ~ersglqFTPD--GQ~LvLlgsik~p~CR~~~~dC~Cs~C~~s~seDNtVKIv~V~~G~vsll~kL~~h-~sV~cIlVc- 1020 (1329)
+-.++.|.|+ +..|+ +|+.|++||||++.... ++..|++| ..|..|.+-
T Consensus 219 -~v~~~~fhP~~~~~~la------------------------t~s~Dgtvklw~~~~e~--~l~~l~gH~~RVs~VafHP 271 (459)
T KOG0272|consen 219 -RVGAAVFHPVDSDLNLA------------------------TASADGTVKLWKLSQET--PLQDLEGHLARVSRVAFHP 271 (459)
T ss_pred -ceeeEEEccCCCcccee------------------------eeccCCceeeeccCCCc--chhhhhcchhhheeeeecC
Confidence 3468999998 66788 99999999999999965 99999999 999999999
Q ss_pred cCCeEEEecCCCeEEEEeccCcceEEEeeeeecCCCCcccceeEEEecCCCCCeeEecCCCccEEEEEccccceeeeecc
Q 000725 1021 EPKHLIAVGESGKLHLWEMNSSWSAQVEECIIPINDCIYPCIVEMKRIPKCAPLVVGHNGFGEFGIWDISKRVLVSRFSA 1100 (1329)
Q Consensus 1021 DpnhLVSaSdDGkL~IWDM~SgWsm~tee~Vi~~n~~v~p~I~elKrFpkss~lIVTgSGDgtf~LWDIskg~llqsF~a 1100 (1329)
++++|+|++=|.+-.+||+.|+--.--.| ||+-.++.+ .|..++++++||+-|..=+|||+.+|.++..|.|
T Consensus 272 sG~~L~TasfD~tWRlWD~~tk~ElL~QE-------GHs~~v~~i-af~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~g 343 (459)
T KOG0272|consen 272 SGKFLGTASFDSTWRLWDLETKSELLLQE-------GHSKGVFSI-AFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAG 343 (459)
T ss_pred CCceeeecccccchhhcccccchhhHhhc-------cccccccee-EecCCCceeeccCccchhheeecccCcEEEEecc
Confidence 99999999999999999999987777777 999999999 9999999999999999999999999999999999
Q ss_pred CccceeE--ecccc----ccccccCcceEECcchhhh--ccccccccccCCCceeecCCCCccceEEEEeeccCccchhh
Q 000725 1101 ARASIYQ--FFPIN----LFSWQRNGSVSMDASLELT--NTATTSLFSKHSEKSSFCPSVGEDSAIWLLVSTISDSDAQH 1172 (1329)
Q Consensus 1101 hs~sV~s--fsP~~----s~S~d~~v~tfd~~s~d~~--leatv~~fSgdvn~VsF~P~sGeD~AiwLLVST~Sdd~t~~ 1172 (1329)
|...|++ |+|.| +||-|.++++||++...+. .-+|.--|+. |+|.| +.+.+|+.++.+.+.++|
T Consensus 344 H~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~----Vk~~p----~~g~fL~TasyD~t~kiW 415 (459)
T KOG0272|consen 344 HIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQ----VKYSP----QEGYFLVTASYDNTVKIW 415 (459)
T ss_pred cccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhh----eEecc----cCCeEEEEcccCcceeee
Confidence 9999999 99999 9999999999999988877 3588888888 99999 668899999999999999
Q ss_pred ccc----ccccCCCCcceeEEEeeeccceecCCCCCCCceeeecCCCeEEeecCCCeEEEEE
Q 000725 1173 NCM----SRDCQKNPVRFWRLALLVKNRVILGSPLDPRASAIGASSGLGIIGTNDGLVYAWE 1230 (1329)
Q Consensus 1173 Dlr----a~~~~gH~n~~wRLALl~K~siI~Gs~ldpra~afs~SG~~gfaGT~DGlVYmWD 1230 (1329)
--+ ++...||-.++-. +++++.|.++++++.|+++++|-
T Consensus 416 s~~~~~~~ksLaGHe~kV~s-------------------~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 416 STRTWSPLKSLAGHEGKVIS-------------------LDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred cCCCcccchhhcCCccceEE-------------------EEeccCCceEEEeccCceeeecc
Confidence 888 8889999998877 78999999999999999999993
No 16
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.90 E-value=1.9e-22 Score=217.45 Aligned_cols=242 Identities=14% Similarity=0.218 Sum_probs=200.0
Q ss_pred eeeEEEecc-cceeEEEEe--cCCeEEEecCCCeEEEEeccCcceEEEee-eeecCCCCcccceeEEEecCCCCCeeEec
Q 000725 1003 SVVAKLKTD-DCVQCILVC--EPKHLIAVGESGKLHLWEMNSSWSAQVEE-CIIPINDCIYPCIVEMKRIPKCAPLVVGH 1078 (1329)
Q Consensus 1003 sll~kL~~h-~sV~cIlVc--DpnhLVSaSdDGkL~IWDM~SgWsm~tee-~Vi~~n~~v~p~I~elKrFpkss~lIVTg 1078 (1329)
.++-+|++| +.|..+.+. ++..|+|++.|.++++|++.+. -..| .+.-..+||++-|-.+ ...+++++-+++
T Consensus 6 ~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~d---d~~~G~~~r~~~GHsH~v~dv-~~s~dg~~alS~ 81 (315)
T KOG0279|consen 6 VLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSD---DIKYGVPVRRLTGHSHFVSDV-VLSSDGNFALSA 81 (315)
T ss_pred eeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccC---ccccCceeeeeeccceEecce-EEccCCceEEec
Confidence 467889999 999999998 7999999999999999997765 1222 1112334899999999 888899999999
Q ss_pred CCCccEEEEEccccceeeeeccCccceeE--ecccc----ccccccCcceEECcchhhh-c-cc-cccccccCCCceeec
Q 000725 1079 NGFGEFGIWDISKRVLVSRFSAARASIYQ--FFPIN----LFSWQRNGSVSMDASLELT-N-TA-TTSLFSKHSEKSSFC 1149 (1329)
Q Consensus 1079 SGDgtf~LWDIskg~llqsF~ahs~sV~s--fsP~~----s~S~d~~v~tfd~~s~d~~-l-ea-tv~~fSgdvn~VsF~ 1149 (1329)
|.|++.+|||+++|+..+.|.+|+.+|++ |+|+. ++|-|.++++|.+-..-+- + +. +.-||+. |+|+
T Consensus 82 swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVsc----vrfs 157 (315)
T KOG0279|consen 82 SWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSC----VRFS 157 (315)
T ss_pred cccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEE----EEEc
Confidence 99999999999999999999999999999 99987 9999999999997544333 4 33 2789999 9999
Q ss_pred CCCCccceEEEEeeccCccchhhccc----ccccCCCCcceeEEEeeeccceecCCCCCCCceeeecCCCeEEeecCCCe
Q 000725 1150 PSVGEDSAIWLLVSTISDSDAQHNCM----SRDCQKNPVRFWRLALLVKNRVILGSPLDPRASAIGASSGLGIIGTNDGL 1225 (1329)
Q Consensus 1150 P~sGeD~AiwLLVST~Sdd~t~~Dlr----a~~~~gH~n~~wRLALl~K~siI~Gs~ldpra~afs~SG~~gfaGT~DGl 1225 (1329)
|. ..+ --|+..+.+.+.+.||++ +..|-||..-. +++++||+|-+.++|..||.
T Consensus 158 P~-~~~--p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v-------------------~t~~vSpDGslcasGgkdg~ 215 (315)
T KOG0279|consen 158 PN-ESN--PIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYV-------------------NTVTVSPDGSLCASGGKDGE 215 (315)
T ss_pred CC-CCC--cEEEEccCCceEEEEccCCcchhhccccccccE-------------------EEEEECCCCCEEecCCCCce
Confidence 93 222 356666778888889999 66666765533 45889999999999999999
Q ss_pred EEEEEccccceeeeeecccCceEEEEEecCCCCceEEEecCCCCCCccccCCCCCCCCcEEEeeeCCC
Q 000725 1226 VYAWELSSGNKLGILHHFKGGTVSCIATDDSGLQALAVAGDGPDGGRRQRDPRHGQNDHVRIWKMDPN 1293 (1329)
Q Consensus 1226 VYmWDLstG~kL~tL~~Heg~rVSCVA~dps~p~~~AsA~d~~d~~~r~~~~~~s~D~~VRiW~~~~~ 1293 (1329)
+++|||..|+++.+|.++.- |-+++++|.+.= +|.|+ +-+||||++++.
T Consensus 216 ~~LwdL~~~k~lysl~a~~~--v~sl~fspnryw-L~~at----------------~~sIkIwdl~~~ 264 (315)
T KOG0279|consen 216 AMLWDLNEGKNLYSLEAFDI--VNSLCFSPNRYW-LCAAT----------------ATSIKIWDLESK 264 (315)
T ss_pred EEEEEccCCceeEeccCCCe--EeeEEecCCcee-Eeecc----------------CCceEEEeccch
Confidence 99999999999999998887 999999977764 55553 455999998874
No 17
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.90 E-value=1.1e-23 Score=234.56 Aligned_cols=277 Identities=16% Similarity=0.186 Sum_probs=234.5
Q ss_pred ccceeeecCCCcEEEEecCccCccccCCCccccccccccccCCCCcEEEEEecCcceeeeEEEecc-cceeEEEEe-cCC
Q 000725 946 ERSCALFTPDGQYLVLLDSMKTPYCREGRSDCLCSTCTSHRLDENAVKIVKVKPGYVSVVAKLKTD-DCVQCILVC-EPK 1023 (1329)
Q Consensus 946 ersglqFTPDGQ~LvLlgsik~p~CR~~~~dC~Cs~C~~s~seDNtVKIv~V~~G~vsll~kL~~h-~sV~cIlVc-Dpn 1023 (1329)
|+-.+.|-++...|+ .++.|..||||+|..+..+++.+|.|- ++++.|-+- ++.
T Consensus 177 ev~~v~~l~~sdtla------------------------tgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~ 232 (459)
T KOG0288|consen 177 EVHDVEFLRNSDTLA------------------------TGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNK 232 (459)
T ss_pred ccceeEEccCcchhh------------------------hcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCc
Confidence 667788888878888 899999999999999999999999999 999999999 999
Q ss_pred eEEEecCCCeEEEEeccCcceEEEeeeeecCCCCcccceeEEEecCCCCCeeEecCCCccEEEEEccccceeeeeccCc-
Q 000725 1024 HLIAVGESGKLHLWEMNSSWSAQVEECIIPINDCIYPCIVEMKRIPKCAPLVVGHNGFGEFGIWDISKRVLVSRFSAAR- 1102 (1329)
Q Consensus 1024 hLVSaSdDGkL~IWDM~SgWsm~tee~Vi~~n~~v~p~I~elKrFpkss~lIVTgSGDgtf~LWDIskg~llqsF~ahs- 1102 (1329)
|++++|-|+.+++|++++.-.+.++. +|.-.+-++ +|...-+.||+||.|.|+++|||.++-|..+.-.-+
T Consensus 233 ~~iAas~d~~~r~Wnvd~~r~~~TLs-------GHtdkVt~a-k~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~ 304 (459)
T KOG0288|consen 233 HVIAASNDKNLRLWNVDSLRLRHTLS-------GHTDKVTAA-KFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQ 304 (459)
T ss_pred eEEeecCCCceeeeeccchhhhhhhc-------ccccceeee-hhhccccceeeccccchhhhhhhhhhheecccccccc
Confidence 99999999999999999999999999 999999999 777766669999999999999999999987764332
Q ss_pred -cceeE-eccccccccccCcceEECcchhhhccccccccccCCCceeecCCCCccceEEEEeeccCccchhhcccccccC
Q 000725 1103 -ASIYQ-FFPINLFSWQRNGSVSMDASLELTNTATTSLFSKHSEKSSFCPSVGEDSAIWLLVSTISDSDAQHNCMSRDCQ 1180 (1329)
Q Consensus 1103 -~sV~s-fsP~~s~S~d~~v~tfd~~s~d~~leatv~~fSgdvn~VsF~P~sGeD~AiwLLVST~Sdd~t~~Dlra~~~~ 1180 (1329)
++|.. ..-.-+++.|++|+.||..+.++++. ++.-|.+.++...| | +.-||+++.+|....+|+|-+.
T Consensus 305 cnDI~~~~~~~~SgH~DkkvRfwD~Rs~~~~~s---v~~gg~vtSl~ls~----~-g~~lLsssRDdtl~viDlRt~e-- 374 (459)
T KOG0288|consen 305 CNDIVCSISDVISGHFDKKVRFWDIRSADKTRS---VPLGGRVTSLDLSM----D-GLELLSSSRDDTLKVIDLRTKE-- 374 (459)
T ss_pred ccceEecceeeeecccccceEEEeccCCceeeE---eecCcceeeEeecc----C-CeEEeeecCCCceeeeeccccc--
Confidence 22222 33344899999999999999999963 22334667799999 7 8899999999999999999665
Q ss_pred CCCcceeEEEeeeccceecCCCCCCCceeeecCCCeEEeecCCCeEEEEEccccceeeeee-cccCceEEEEEecCCCCc
Q 000725 1181 KNPVRFWRLALLVKNRVILGSPLDPRASAIGASSGLGIIGTNDGLVYAWELSSGNKLGILH-HFKGGTVSCIATDDSGLQ 1259 (1329)
Q Consensus 1181 gH~n~~wRLALl~K~siI~Gs~ldpra~afs~SG~~gfaGT~DGlVYmWDLstG~kL~tL~-~Heg~rVSCVA~dps~p~ 1259 (1329)
=.-.|.-+....|+ |-+.++|||.|.|+++|+-||.||+|++.+|+.-..|. .|.+-.++|++.+|++..
T Consensus 375 -------I~~~~sA~g~k~as--DwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~ 445 (459)
T KOG0288|consen 375 -------IRQTFSAEGFKCAS--DWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSG 445 (459)
T ss_pred -------EEEEeecccccccc--ccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCch
Confidence 22334445555566 67889999999999999999999999999999988885 333324999999999987
Q ss_pred eEEEecCCCCCCccccCCCCCCCCcEEEee
Q 000725 1260 ALAVAGDGPDGGRRQRDPRHGQNDHVRIWK 1289 (1329)
Q Consensus 1260 ~~AsA~d~~d~~~r~~~~~~s~D~~VRiW~ 1289 (1329)
+++| +.+..|++|.
T Consensus 446 -Llsa---------------dk~~~v~lW~ 459 (459)
T KOG0288|consen 446 -LLSA---------------DKQKAVTLWT 459 (459)
T ss_pred -hhcc---------------cCCcceEecC
Confidence 8888 6788888884
No 18
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=3.8e-23 Score=228.01 Aligned_cols=269 Identities=12% Similarity=0.115 Sum_probs=227.2
Q ss_pred cceeeecCCCcEEEEecCccCccccCCCccccccccccccCCCCcEEEEEecCcceeeeEEEecc-cceeEEEEe-cCCe
Q 000725 947 RSCALFTPDGQYLVLLDSMKTPYCREGRSDCLCSTCTSHRLDENAVKIVKVKPGYVSVVAKLKTD-DCVQCILVC-EPKH 1024 (1329)
Q Consensus 947 rsglqFTPDGQ~LvLlgsik~p~CR~~~~dC~Cs~C~~s~seDNtVKIv~V~~G~vsll~kL~~h-~sV~cIlVc-Dpnh 1024 (1329)
-+-+-|-|+=-..| ++++|.+||+|+-.+|- +...|+|| ++|.+|++. -..+
T Consensus 111 vt~v~~hp~~~~v~------------------------~as~d~tikv~D~~tg~--~e~~LrGHt~sv~di~~~a~Gk~ 164 (406)
T KOG0295|consen 111 VTRVIFHPSEALVV------------------------SASEDATIKVFDTETGE--LERSLRGHTDSVFDISFDASGKY 164 (406)
T ss_pred eeeeeeccCceEEE------------------------EecCCceEEEEEccchh--hhhhhhccccceeEEEEecCccE
Confidence 34566799987788 89999999999999998 79999999 999999999 8999
Q ss_pred EEEecCCCeEEEEeccCc-ceEEEeeeeecCCCCcccceeEEEecCCCCCeeEecCCCccEEEEEccccceeeeeccCcc
Q 000725 1025 LIAVGESGKLHLWEMNSS-WSAQVEECIIPINDCIYPCIVEMKRIPKCAPLVVGHNGFGEFGIWDISKRVLVSRFSAARA 1103 (1329)
Q Consensus 1025 LVSaSdDGkL~IWDM~Sg-Wsm~tee~Vi~~n~~v~p~I~elKrFpkss~lIVTgSGDgtf~LWDIskg~llqsF~ahs~ 1103 (1329)
||++|.|=.+++||..+. -.++. +.+|.+.|-++ .|-+-+..|++++.|.+|.+||+.+|-|+.+|.+|+.
T Consensus 165 l~tcSsDl~~~LWd~~~~~~c~ks-------~~gh~h~vS~V-~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~e 236 (406)
T KOG0295|consen 165 LATCSSDLSAKLWDFDTFFRCIKS-------LIGHEHGVSSV-FFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSE 236 (406)
T ss_pred EEecCCccchhheeHHHHHHHHHH-------hcCcccceeeE-EEEecCCeeeecccccceeEEecccceeEEeccCchH
Confidence 999999999999998773 23333 33789999999 5656689999999999999999999999999999999
Q ss_pred ceeEecccc------ccccccCcceEECcchhhh--ccccccccccCCCceeecC-----CCCccc-----eEEEEeecc
Q 000725 1104 SIYQFFPIN------LFSWQRNGSVSMDASLELT--NTATTSLFSKHSEKSSFCP-----SVGEDS-----AIWLLVSTI 1165 (1329)
Q Consensus 1104 sV~sfsP~~------s~S~d~~v~tfd~~s~d~~--leatv~~fSgdvn~VsF~P-----~sGeD~-----AiwLLVST~ 1165 (1329)
-|-.|-|.. +|+-|-++++|.+++.+++ +-.+-++++. ++|-| ..-|.. +..+.+++.
T Consensus 237 wvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEc----i~wap~~~~~~i~~at~~~~~~~~l~s~Sr 312 (406)
T KOG0295|consen 237 WVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVEC----IAWAPESSYPSISEATGSTNGGQVLGSGSR 312 (406)
T ss_pred hEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEE----EEecccccCcchhhccCCCCCccEEEeecc
Confidence 887755544 8999999999999999988 3467787777 54444 222222 357888899
Q ss_pred Cccchhhccc----ccccCCCCcceeEEEeeeccceecCCCCCCCceeeecCCCeEEeecCCCeEEEEEccccceeeeee
Q 000725 1166 SDSDAQHNCM----SRDCQKNPVRFWRLALLVKNRVILGSPLDPRASAIGASSGLGIIGTNDGLVYAWELSSGNKLGILH 1241 (1329)
Q Consensus 1166 Sdd~t~~Dlr----a~~~~gH~n~~wRLALl~K~siI~Gs~ldpra~afs~SG~~gfaGT~DGlVYmWDLstG~kL~tL~ 1241 (1329)
|.+++.||+. +=+..||-||+=. ++|++.|+|+++-.+|+++++||+..++++.+|.
T Consensus 313 DktIk~wdv~tg~cL~tL~ghdnwVr~-------------------~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ 373 (406)
T KOG0295|consen 313 DKTIKIWDVSTGMCLFTLVGHDNWVRG-------------------VAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLE 373 (406)
T ss_pred cceEEEEeccCCeEEEEEecccceeee-------------------eEEcCCCeEEEEEecCCcEEEEEeccceeeeccC
Confidence 9999999998 5556777777644 7799999999999999999999999999999999
Q ss_pred cccCceEEEEEecCCCCceEEEecCCCCCCccccCCCCCCCCcEEEee
Q 000725 1242 HFKGGTVSCIATDDSGLQALAVAGDGPDGGRRQRDPRHGQNDHVRIWK 1289 (1329)
Q Consensus 1242 ~Heg~rVSCVA~dps~p~~~AsA~d~~d~~~r~~~~~~s~D~~VRiW~ 1289 (1329)
+|+. -|+|++.|-+.|- |.++ |.|++|++|.
T Consensus 374 ah~h-fvt~lDfh~~~p~-VvTG---------------sVdqt~KvwE 404 (406)
T KOG0295|consen 374 AHEH-FVTSLDFHKTAPY-VVTG---------------SVDQTVKVWE 404 (406)
T ss_pred CCcc-eeEEEecCCCCce-EEec---------------cccceeeeee
Confidence 9999 8999999988885 5555 7888888885
No 19
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.90 E-value=5e-24 Score=234.07 Aligned_cols=230 Identities=19% Similarity=0.333 Sum_probs=187.3
Q ss_pred ccCCCCcEEEEEecCcceeeeEEEecc-cceeEEEEecCCeEEEecCCCeEEEEeccCcceEEEeeeeecCCCCccccee
Q 000725 985 HRLDENAVKIVKVKPGYVSVVAKLKTD-DCVQCILVCEPKHLIAVGESGKLHLWEMNSSWSAQVEECIIPINDCIYPCIV 1063 (1329)
Q Consensus 985 s~seDNtVKIv~V~~G~vsll~kL~~h-~sV~cIlVcDpnhLVSaSdDGkL~IWDM~SgWsm~tee~Vi~~n~~v~p~I~ 1063 (1329)
+|+.||||||||+++ .+.+.+|.|| ++|.|+-.|+. .|||+|-|.+++|||+++|-...++. .|---++
T Consensus 212 SGlrDnTikiWD~n~--~~c~~~L~GHtGSVLCLqyd~r-viisGSSDsTvrvWDv~tge~l~tli-------hHceaVL 281 (499)
T KOG0281|consen 212 SGLRDNTIKIWDKNS--LECLKILTGHTGSVLCLQYDER-VIVSGSSDSTVRVWDVNTGEPLNTLI-------HHCEAVL 281 (499)
T ss_pred cccccCceEEecccc--HHHHHhhhcCCCcEEeeeccce-EEEecCCCceEEEEeccCCchhhHHh-------hhcceeE
Confidence 999999999999999 5699999999 99999988765 99999999999999999999999999 8888999
Q ss_pred EEEecCCCCCeeEecCCCccEEEEEccccc---eeeeeccCccceeE--ecccc--ccccccCcceEECcchhhhccccc
Q 000725 1064 EMKRIPKCAPLVVGHNGFGEFGIWDISKRV---LVSRFSAARASIYQ--FFPIN--LFSWQRNGSVSMDASLELTNTATT 1136 (1329)
Q Consensus 1064 elKrFpkss~lIVTgSGDgtf~LWDIskg~---llqsF~ahs~sV~s--fsP~~--s~S~d~~v~tfd~~s~d~~leatv 1136 (1329)
.| +|++ .++||+|-|-++++||+.+-. +...+.||.+.|.. |...- +.|=|+++++|++.++|..|..+.
T Consensus 282 hl-rf~n--g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~kyIVsASgDRTikvW~~st~efvRtl~g 358 (499)
T KOG0281|consen 282 HL-RFSN--GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWSTSTCEFVRTLNG 358 (499)
T ss_pred EE-EEeC--CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccccceEEEecCCceEEEEeccceeeehhhhc
Confidence 99 9987 799999999999999998765 35678899998887 43322 677788888888888887652111
Q ss_pred cccccCCCceeecCCCCccceEEEEeeccCccchhhcccccccCCCCcceeEEEeeeccceecCCCCCCCceeeecCCCe
Q 000725 1137 SLFSKHSEKSSFCPSVGEDSAIWLLVSTISDSDAQHNCMSRDCQKNPVRFWRLALLVKNRVILGSPLDPRASAIGASSGL 1216 (1329)
Q Consensus 1137 ~~fSgdvn~VsF~P~sGeD~AiwLLVST~Sdd~t~~Dlra~~~~gH~n~~wRLALl~K~siI~Gs~ldpra~afs~SG~~ 1216 (1329)
+ -| -++|+-..|++
T Consensus 359 H-------------------------------------------------kR-----------------GIAClQYr~rl 372 (499)
T KOG0281|consen 359 H-------------------------------------------------KR-----------------GIACLQYRDRL 372 (499)
T ss_pred c-------------------------------------------------cc-----------------cceehhccCeE
Confidence 0 01 12455667999
Q ss_pred EEeecCCCeEEEEEccccceeeeeecccCceEEEEEecCCCCceEEEecCCCCCCccccCCCCCCCCcEEEeeeCCCc--
Q 000725 1217 GIIGTNDGLVYAWELSSGNKLGILHHFKGGTVSCIATDDSGLQALAVAGDGPDGGRRQRDPRHGQNDHVRIWKMDPNL-- 1294 (1329)
Q Consensus 1217 gfaGT~DGlVYmWDLstG~kL~tL~~Heg~rVSCVA~dps~p~~~AsA~d~~d~~~r~~~~~~s~D~~VRiW~~~~~~-- 1294 (1329)
+++|+.|.+|.+||+..|.+|-.|+||+. -|-||.++ ..-++++ +-||+||||+....+
T Consensus 373 vVSGSSDntIRlwdi~~G~cLRvLeGHEe-LvRciRFd---~krIVSG---------------aYDGkikvWdl~aaldp 433 (499)
T KOG0281|consen 373 VVSGSSDNTIRLWDIECGACLRVLEGHEE-LVRCIRFD---NKRIVSG---------------AYDGKIKVWDLQAALDP 433 (499)
T ss_pred EEecCCCceEEEEeccccHHHHHHhchHH-hhhheeec---Cceeeec---------------cccceEEEEecccccCC
Confidence 99999999999999999999999999999 69999999 3336777 678888888765443
Q ss_pred ------ceeecCCCC------cccceEEEe
Q 000725 1295 ------GCVRNSNGD------SKFKQFQIS 1312 (1329)
Q Consensus 1295 ------~~~~~~~~~------~~~~~~~~~ 1312 (1329)
-|++.--.. -.|..|||-
T Consensus 434 ra~~~~~Cl~~lv~hsgRVFrLQFD~fqIv 463 (499)
T KOG0281|consen 434 RAPASTLCLRTLVEHSGRVFRLQFDEFQII 463 (499)
T ss_pred cccccchHHHhhhhccceeEEEeecceEEE
Confidence 266533222 257788873
No 20
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.90 E-value=2.8e-22 Score=232.31 Aligned_cols=245 Identities=13% Similarity=0.136 Sum_probs=204.7
Q ss_pred ccCCCCcEEEEEecCcceeeeEE-Eecc-cceeEEEEe-cCCeEEEecCCCeEEEEeccCcceEEEeeeeecCCCCcccc
Q 000725 985 HRLDENAVKIVKVKPGYVSVVAK-LKTD-DCVQCILVC-EPKHLIAVGESGKLHLWEMNSSWSAQVEECIIPINDCIYPC 1061 (1329)
Q Consensus 985 s~seDNtVKIv~V~~G~vsll~k-L~~h-~sV~cIlVc-DpnhLVSaSdDGkL~IWDM~SgWsm~tee~Vi~~n~~v~p~ 1061 (1329)
.++.|++|++|+...|+ .+.. |.|| ++|-++.+. ..+.|||+|.|++++|||++||=+..++. +|...
T Consensus 223 ~~s~~~tl~~~~~~~~~--~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~-------gh~st 293 (537)
T KOG0274|consen 223 SGSDDSTLHLWDLNNGY--LILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQ-------GHTSS 293 (537)
T ss_pred ecCCCceeEEeecccce--EEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEec-------CCCce
Confidence 78999999999999999 6666 9999 999999999 59999999999999999999999999999 99988
Q ss_pred eeEEEecCCCCCeeEecCCCccEEEEEccccceeeeeccCccceeEecccc----ccccccCcceEECcchhhh--cccc
Q 000725 1062 IVEMKRIPKCAPLVVGHNGFGEFGIWDISKRVLVSRFSAARASIYQFFPIN----LFSWQRNGSVSMDASLELT--NTAT 1135 (1329)
Q Consensus 1062 I~elKrFpkss~lIVTgSGDgtf~LWDIskg~llqsF~ahs~sV~sfsP~~----s~S~d~~v~tfd~~s~d~~--leat 1135 (1329)
+.++ ....-++++||.|.++++|||+.|++++++.||.+.|.++.=.+ ++++|+.|++|++..+++. +.+|
T Consensus 294 v~~~---~~~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH 370 (537)
T KOG0274|consen 294 VRCL---TIDPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLDEPLLVSGSYDGTVKVWDPRTGKCLKSLSGH 370 (537)
T ss_pred EEEE---EccCceEeeccCCceEEEEeccCcceEEEeccccccEEEEEecCCEEEEEecCceEEEEEhhhceeeeeecCC
Confidence 8887 45567899999999999999999999999999999999933333 8999999999999987777 5567
Q ss_pred ccccccCCCceeecCCCCccceEEEEeeccCccchhhccc-----ccccCCCCcceeEEEeeeccceecCCCCCCCceee
Q 000725 1136 TSLFSKHSEKSSFCPSVGEDSAIWLLVSTISDSDAQHNCM-----SRDCQKNPVRFWRLALLVKNRVILGSPLDPRASAI 1210 (1329)
Q Consensus 1136 v~~fSgdvn~VsF~P~sGeD~AiwLLVST~Sdd~t~~Dlr-----a~~~~gH~n~~wRLALl~K~siI~Gs~ldpra~af 1210 (1329)
..+|-. +.|-+ + .-++.++.+..++.||++ ...|++|..-.+.|.
T Consensus 371 ~~~V~s----l~~~~---~---~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~-------------------- 420 (537)
T KOG0274|consen 371 TGRVYS----LIVDS---E---NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLL-------------------- 420 (537)
T ss_pred cceEEE----EEecC---c---ceEEeeeeccceEeecCCchhhhhhhhcCCcccccccc--------------------
Confidence 777777 53333 2 456667777778889998 457888888877655
Q ss_pred ecCCCeEEeecCCCeEEEEEccccceeeeeec-ccCceEEEEEecCCCCceEEEecCCCCCCccccCCC
Q 000725 1211 GASSGLGIIGTNDGLVYAWELSSGNKLGILHH-FKGGTVSCIATDDSGLQALAVAGDGPDGGRRQRDPR 1278 (1329)
Q Consensus 1211 s~SG~~gfaGT~DGlVYmWDLstG~kL~tL~~-Heg~rVSCVA~dps~p~~~AsA~d~~d~~~r~~~~~ 1278 (1329)
..+.++++++-||.|++||..+|.++.++++ |.+ .|++++.. ++. ++.++ -|+++++||-|
T Consensus 421 -~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~-~v~~l~~~--~~~-il~s~--~~~~~~l~dl~ 482 (537)
T KOG0274|consen 421 -LRDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVG-GVSALALG--KEE-ILCSS--DDGSVKLWDLR 482 (537)
T ss_pred -cccceeEeccccccEEEeecccCceeeeeccCCcc-cEEEeecC--cce-EEEEe--cCCeeEEEecc
Confidence 4789999999999999999999999999999 667 79999987 455 44451 23444444443
No 21
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.89 E-value=4e-23 Score=225.60 Aligned_cols=304 Identities=17% Similarity=0.201 Sum_probs=244.2
Q ss_pred EEEEEEeeeCCCCC-CCCceeecccccccccccccccccccccceeeecCCCcEEEEecCccCccccCCCcccccccccc
Q 000725 906 TLFIYTVDIQEPRV-GNPSCVGHTSVMLPFLKDNFGREIALERSCALFTPDGQYLVLLDSMKTPYCREGRSDCLCSTCTS 984 (1329)
Q Consensus 906 ~Lf~Yki~i~~~~~-~~p~~vg~t~~llp~~~~~~~~~~~~ersglqFTPDGQ~LvLlgsik~p~CR~~~~dC~Cs~C~~ 984 (1329)
-||-=|-+.|++-+ ..|+.+.|+ -.||...-.| +++|+|||||||
T Consensus 184 DLFRGkAA~K~~~Ee~~Pt~l~r~--------IKFg~KSh~E--cA~FSPDgqyLv------------------------ 229 (508)
T KOG0275|consen 184 DLFRGKAAMKDQEEERYPTQLARS--------IKFGQKSHVE--CARFSPDGQYLV------------------------ 229 (508)
T ss_pred eeccchhhhhhhHhhhchHHhhhh--------eecccccchh--heeeCCCCceEe------------------------
Confidence 46666777776643 457655543 2466655544 789999999999
Q ss_pred ccCCCCcEEEEEecCcceeeeEE--------Eecc-cceeEEEEe-cCCeEEEecCCCeEEEEeccCcceEEEeeeeecC
Q 000725 985 HRLDENAVKIVKVKPGYVSVVAK--------LKTD-DCVQCILVC-EPKHLIAVGESGKLHLWEMNSSWSAQVEECIIPI 1054 (1329)
Q Consensus 985 s~seDNtVKIv~V~~G~vsll~k--------L~~h-~sV~cIlVc-DpnhLVSaSdDGkL~IWDM~SgWsm~tee~Vi~~ 1054 (1329)
++|-|+-|.+|+--+|. +.+. |+-+ +.|.||.++ |.--|+|+++||+|+||.+.||-+.+.++
T Consensus 230 sgSvDGFiEVWny~~GK--lrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFd----- 302 (508)
T KOG0275|consen 230 SGSVDGFIEVWNYTTGK--LRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFD----- 302 (508)
T ss_pred eccccceeeeehhccch--hhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhh-----
Confidence 99999999999999999 4443 4455 899999999 99999999999999999999999999887
Q ss_pred CCCcccceeEEEecCCCCCeeEecCCCccEEEEEccccceeeeeccCccceeE--ecccc----ccccccCcceEECcch
Q 000725 1055 NDCIYPCIVEMKRIPKCAPLVVGHNGFGEFGIWDISKRVLVSRFSAARASIYQ--FFPIN----LFSWQRNGSVSMDASL 1128 (1329)
Q Consensus 1055 n~~v~p~I~elKrFpkss~lIVTgSGDgtf~LWDIskg~llqsF~ahs~sV~s--fsP~~----s~S~d~~v~tfd~~s~ 1128 (1329)
+-|+..+-+| +|.++.++|+++|+|.+++|--+.+|.++..|.||+.-|.. |.+++ ++|-||+|++|+.-+.
T Consensus 303 -rAHtkGvt~l-~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~Ktt 380 (508)
T KOG0275|consen 303 -RAHTKGVTCL-SFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTT 380 (508)
T ss_pred -hhhccCeeEE-EEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcch
Confidence 4589999999 99999999999999999999999999999999999999999 99999 8999999999999999
Q ss_pred hhh---c-cccccccccCCCceeecCCCCccceEEEEeeccCccchhhcccccccCCCCcceeEEEeeeccceecCCCCC
Q 000725 1129 ELT---N-TATTSLFSKHSEKSSFCPSVGEDSAIWLLVSTISDSDAQHNCMSRDCQKNPVRFWRLALLVKNRVILGSPLD 1204 (1329)
Q Consensus 1129 d~~---l-eatv~~fSgdvn~VsF~P~sGeD~AiwLLVST~Sdd~t~~Dlra~~~~gH~n~~wRLALl~K~siI~Gs~ld 1204 (1329)
|+. . ..+-. -+|+|-..|-..|- +.|--.+++.+..++.-+ .++...-.--++ =|
T Consensus 381 eC~~Tfk~~~~d~----~vnsv~~~PKnpeh----~iVCNrsntv~imn~qGQ-----vVrsfsSGkREg--------Gd 439 (508)
T KOG0275|consen 381 ECLSTFKPLGTDY----PVNSVILLPKNPEH----FIVCNRSNTVYIMNMQGQ-----VVRSFSSGKREG--------GD 439 (508)
T ss_pred hhhhhccCCCCcc----cceeEEEcCCCCce----EEEEcCCCeEEEEeccce-----EEeeeccCCccC--------Cc
Confidence 998 1 23333 45669999955444 556678888888777511 222211000000 01
Q ss_pred CCceeeecCCCeEEeecCCCeEEEEEccccceeeeeecccCceEEEEEecCCCCceEEEecCCCCCCccccCC
Q 000725 1205 PRASAIGASSGLGIIGTNDGLVYAWELSSGNKLGILHHFKGGTVSCIATDDSGLQALAVAGDGPDGGRRQRDP 1277 (1329)
Q Consensus 1205 pra~afs~SG~~gfaGT~DGlVYmWDLstG~kL~tL~~Heg~rVSCVA~dps~p~~~AsA~d~~d~~~r~~~~ 1277 (1329)
=-+++++|-|..+.|-.+|+.+|-+-+++|+--.+|--|+. -|.-++.||-++- +|+ -+-||+++.|-|
T Consensus 440 Fi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEk-dvIGl~HHPHqNl-lAs--YsEDgllKLWkp 508 (508)
T KOG0275|consen 440 FINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEK-DVIGLTHHPHQNL-LAS--YSEDGLLKLWKP 508 (508)
T ss_pred eEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccc-cccccccCcccch-hhh--hcccchhhhcCC
Confidence 12488999999999999999999999999999999999999 7999999988876 544 456777777754
No 22
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.89 E-value=1.7e-21 Score=210.15 Aligned_cols=296 Identities=13% Similarity=0.194 Sum_probs=230.7
Q ss_pred cceeeee-cccccceeeeeeccCCeEEEEEEeccccccceEEEEEEeeeCCCCCCCCceeeccccccccccccccccccc
Q 000725 867 FDLMGCY-FFPLPILSVLLSTTGDKIYVCVSCGFLVDKKRTLFIYTVDIQEPRVGNPSCVGHTSVMLPFLKDNFGREIAL 945 (1329)
Q Consensus 867 ~~l~g~y-~HpmpVlsv~l~t~~~ei~IcVlCG~L~~~~r~Lf~Yki~i~~~~~~~p~~vg~t~~llp~~~~~~~~~~~~ 945 (1329)
+.+.|-| -||==|-.+...+++-+|++ =.+.+.+++++++.-++...|.|- ..|.| -.-
T Consensus 5 l~l~~tl~gh~d~Vt~la~~~~~~~~l~------sasrDk~ii~W~L~~dd~~~G~~~-------------r~~~G-HsH 64 (315)
T KOG0279|consen 5 LVLRGTLEGHTDWVTALAIKIKNSDILV------SASRDKTIIVWKLTSDDIKYGVPV-------------RRLTG-HSH 64 (315)
T ss_pred heeeeeecCCCceEEEEEeecCCCceEE------EcccceEEEEEEeccCccccCcee-------------eeeec-cce
Confidence 3444444 27777888999999655554 357899999999999999999885 33333 223
Q ss_pred ccceeeecCCCcEEEEecCccCccccCCCccccccccccccCCCCcEEEEEecCcceeeeEEEecc-cceeEEEEe-cCC
Q 000725 946 ERSCALFTPDGQYLVLLDSMKTPYCREGRSDCLCSTCTSHRLDENAVKIVKVKPGYVSVVAKLKTD-DCVQCILVC-EPK 1023 (1329)
Q Consensus 946 ersglqFTPDGQ~LvLlgsik~p~CR~~~~dC~Cs~C~~s~seDNtVKIv~V~~G~vsll~kL~~h-~sV~cIlVc-Dpn 1023 (1329)
..+.+..++||||-+ ++|-|+++|+||+++|. ....|.+| -.|.||.|. |++
T Consensus 65 ~v~dv~~s~dg~~al------------------------S~swD~~lrlWDl~~g~--~t~~f~GH~~dVlsva~s~dn~ 118 (315)
T KOG0279|consen 65 FVSDVVLSSDGNFAL------------------------SASWDGTLRLWDLATGE--STRRFVGHTKDVLSVAFSTDNR 118 (315)
T ss_pred EecceEEccCCceEE------------------------eccccceEEEEEecCCc--EEEEEEecCCceEEEEecCCCc
Confidence 567899999999999 99999999999999996 99999999 999999999 999
Q ss_pred eEEEecCCCeEEEEeccCcceEEEeeeeecCCCCcccceeEEEecCCC--CCeeEecCCCccEEEEEccccceeeeeccC
Q 000725 1024 HLIAVGESGKLHLWEMNSSWSAQVEECIIPINDCIYPCIVEMKRIPKC--APLVVGHNGFGEFGIWDISKRVLVSRFSAA 1101 (1329)
Q Consensus 1024 hLVSaSdDGkL~IWDM~SgWsm~tee~Vi~~n~~v~p~I~elKrFpks--s~lIVTgSGDgtf~LWDIskg~llqsF~ah 1101 (1329)
.|||+|-|++|.+|+.-..=.....+ +++..-|.+| ||.+. ...||++|-|+++++||+...++.++|.||
T Consensus 119 qivSGSrDkTiklwnt~g~ck~t~~~------~~~~~WVscv-rfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh 191 (315)
T KOG0279|consen 119 QIVSGSRDKTIKLWNTLGVCKYTIHE------DSHREWVSCV-RFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGH 191 (315)
T ss_pred eeecCCCcceeeeeeecccEEEEEec------CCCcCcEEEE-EEcCCCCCcEEEEccCCceEEEEccCCcchhhccccc
Confidence 99999999999999976643333333 2235557777 89887 789999999999999999999999999999
Q ss_pred ccceeE--ecccc----ccccccCcceEECcchhhhc-cccccccccCCCceeecCCCCccceEEEEeeccCccchhhcc
Q 000725 1102 RASIYQ--FFPIN----LFSWQRNGSVSMDASLELTN-TATTSLFSKHSEKSSFCPSVGEDSAIWLLVSTISDSDAQHNC 1174 (1329)
Q Consensus 1102 s~sV~s--fsP~~----s~S~d~~v~tfd~~s~d~~l-eatv~~fSgdvn~VsF~P~sGeD~AiwLLVST~Sdd~t~~Dl 1174 (1329)
+..|.. ++||| ++-=||..-+|++..++..- ..+...+ ++.+|+| . +-||...|+.. ++.||+
T Consensus 192 ~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~~~v----~sl~fsp----n-rywL~~at~~s-IkIwdl 261 (315)
T KOG0279|consen 192 SGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAFDIV----NSLCFSP----N-RYWLCAATATS-IKIWDL 261 (315)
T ss_pred cccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccCCCeE----eeEEecC----C-ceeEeeccCCc-eEEEec
Confidence 999998 99999 56678888999999988862 2334444 4499999 5 88998888876 888998
Q ss_pred cccccCCCCcceeEEEeeeccceecCCCCCCCc--eeeecCCCeEEeecCCCeEEEEEccc
Q 000725 1175 MSRDCQKNPVRFWRLALLVKNRVILGSPLDPRA--SAIGASSGLGIIGTNDGLVYAWELSS 1233 (1329)
Q Consensus 1175 ra~~~~gH~n~~wRLALl~K~siI~Gs~ldpra--~afs~SG~~gfaGT~DGlVYmWDLst 1233 (1329)
..+. ....+++-.--+ + -..=+|++ +|+++.|.++|+|+.|+.|.+|++.+
T Consensus 262 ~~~~----~v~~l~~d~~g~-s---~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~~ 314 (315)
T KOG0279|consen 262 ESKA----VVEELKLDGIGP-S---SKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVAK 314 (315)
T ss_pred cchh----hhhhcccccccc-c---cccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEeec
Confidence 8554 222222221111 0 00113433 67788899999999999999999865
No 23
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.88 E-value=2.4e-21 Score=226.38 Aligned_cols=297 Identities=17% Similarity=0.221 Sum_probs=219.6
Q ss_pred ccceeeeeeccCCeEEEEEEeccccccceEEEEEEeeeCCCCCCCCceeecccccccccccccccccccccceeeecCCC
Q 000725 877 LPILSVLLSTTGDKIYVCVSCGFLVDKKRTLFIYTVDIQEPRVGNPSCVGHTSVMLPFLKDNFGREIALERSCALFTPDG 956 (1329)
Q Consensus 877 mpVlsv~l~t~~~ei~IcVlCG~L~~~~r~Lf~Yki~i~~~~~~~p~~vg~t~~llp~~~~~~~~~~~~ersglqFTPDG 956 (1329)
||++.+.+|-+||-|-| -|+-|+ +|.||..-.+-+-+.- -||. ++..+++++|||
T Consensus 308 ~~I~t~~~N~tGDWiA~--g~~klg----QLlVweWqsEsYVlKQ---QgH~----------------~~i~~l~YSpDg 362 (893)
T KOG0291|consen 308 QKILTVSFNSTGDWIAF--GCSKLG----QLLVWEWQSESYVLKQ---QGHS----------------DRITSLAYSPDG 362 (893)
T ss_pred ceeeEEEecccCCEEEE--cCCccc----eEEEEEeeccceeeec---cccc----------------cceeeEEECCCC
Confidence 55666666766666543 444332 6677766543321110 0232 356789999999
Q ss_pred cEEEEecCccCccccCCCccccccccccccCCCCcEEEEEecCcceeeeEEEecc-cceeEEEEe-cCCeEEEecCCCeE
Q 000725 957 QYLVLLDSMKTPYCREGRSDCLCSTCTSHRLDENAVKIVKVKPGYVSVVAKLKTD-DCVQCILVC-EPKHLIAVGESGKL 1034 (1329)
Q Consensus 957 Q~LvLlgsik~p~CR~~~~dC~Cs~C~~s~seDNtVKIv~V~~G~vsll~kL~~h-~sV~cIlVc-DpnhLVSaSdDGkL 1034 (1329)
|+++ .|++|+.||||+..+|. +++||.-| .+|..|.|+ .++.|+|+|.||++
T Consensus 363 q~ia------------------------TG~eDgKVKvWn~~Sgf--C~vTFteHts~Vt~v~f~~~g~~llssSLDGtV 416 (893)
T KOG0291|consen 363 QLIA------------------------TGAEDGKVKVWNTQSGF--CFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTV 416 (893)
T ss_pred cEEE------------------------eccCCCcEEEEeccCce--EEEEeccCCCceEEEEEEecCCEEEEeecCCeE
Confidence 9999 99999999999999999 99999999 999999999 99999999999999
Q ss_pred EEEeccCcceEEEeeeeecCCCCcccceeEEEecCCCCCeeEecCCCc-cEEEEEccccceeeeeccCccceeE--eccc
Q 000725 1035 HLWEMNSSWSAQVEECIIPINDCIYPCIVEMKRIPKCAPLVVGHNGFG-EFGIWDISKRVLVSRFSAARASIYQ--FFPI 1111 (1329)
Q Consensus 1035 ~IWDM~SgWsm~tee~Vi~~n~~v~p~I~elKrFpkss~lIVTgSGDg-tf~LWDIskg~llqsF~ahs~sV~s--fsP~ 1111 (1329)
+.|||...-.-+|+- |-.|.-+.-.++-+++.+|.-|+-|. .|-+|++++|+++..++||.++|.+ |+|.
T Consensus 417 RAwDlkRYrNfRTft-------~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~ 489 (893)
T KOG0291|consen 417 RAWDLKRYRNFRTFT-------SPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPD 489 (893)
T ss_pred Eeeeecccceeeeec-------CCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccc
Confidence 999999988888777 44444333238889999999999887 6999999999999999999999997 9999
Q ss_pred c----ccccccCcceEECcchhhhccccccccccCCCceeecCCCCccceEEEEeeccCccchhhcccc-cc-cCC----
Q 000725 1112 N----LFSWQRNGSVSMDASLELTNTATTSLFSKHSEKSSFCPSVGEDSAIWLLVSTISDSDAQHNCMS-RD-CQK---- 1181 (1329)
Q Consensus 1112 ~----s~S~d~~v~tfd~~s~d~~leatv~~fSgdvn~VsF~P~sGeD~AiwLLVST~Sdd~t~~Dlra-~~-~~g---- 1181 (1329)
+ ++|||.+||+|+.=+--.+.| ...+..|+-.|+|.| | +.-|-|+|.+.-++.||... .+ +++
T Consensus 490 ~~~LaS~SWDkTVRiW~if~s~~~vE--tl~i~sdvl~vsfrP----d-G~elaVaTldgqItf~d~~~~~q~~~Idgrk 562 (893)
T KOG0291|consen 490 GSLLASGSWDKTVRIWDIFSSSGTVE--TLEIRSDVLAVSFRP----D-GKELAVATLDGQITFFDIKEAVQVGSIDGRK 562 (893)
T ss_pred cCeEEeccccceEEEEEeeccCceee--eEeeccceeEEEEcC----C-CCeEEEEEecceEEEEEhhhceeeccccchh
Confidence 9 899999999999755433321 112334666699999 4 55566999999999999872 11 000
Q ss_pred --CCcceeEEEeeeccceecCCCCCCCceeeecCCCeEEeecCCCeEEEEEccccceeeeee
Q 000725 1182 --NPVRFWRLALLVKNRVILGSPLDPRASAIGASSGLGIIGTNDGLVYAWELSSGNKLGILH 1241 (1329)
Q Consensus 1182 --H~n~~wRLALl~K~siI~Gs~ldpra~afs~SG~~gfaGT~DGlVYmWDLstG~kL~tL~ 1241 (1329)
-.+|.-+=..-++++ --|..+ ++.++++.|.++++|.+-+.|-|+|+-+|-.|..++
T Consensus 563 D~~~gR~~~D~~ta~~s-a~~K~F--tti~ySaDG~~IlAgG~sn~iCiY~v~~~vllkkfq 621 (893)
T KOG0291|consen 563 DLSGGRKETDRITAENS-AKGKTF--TTICYSADGKCILAGGESNSICIYDVPEGVLLKKFQ 621 (893)
T ss_pred hccccccccceeehhhc-ccCCce--EEEEEcCCCCEEEecCCcccEEEEECchhheeeeEE
Confidence 001100000000100 001111 457899999999999999999999999998888875
No 24
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.88 E-value=1e-21 Score=221.30 Aligned_cols=238 Identities=13% Similarity=0.157 Sum_probs=196.4
Q ss_pred eeEEEecc--cceeEEEEe-cCCeEEEecCCCeEEEEeccCcc--eEEEeeeeecCCCCcccceeEEEecCCCCCeeEec
Q 000725 1004 VVAKLKTD--DCVQCILVC-EPKHLIAVGESGKLHLWEMNSSW--SAQVEECIIPINDCIYPCIVEMKRIPKCAPLVVGH 1078 (1329)
Q Consensus 1004 ll~kL~~h--~sV~cIlVc-DpnhLVSaSdDGkL~IWDM~SgW--sm~tee~Vi~~n~~v~p~I~elKrFpkss~lIVTg 1078 (1329)
+.+.+.+| .+|.|+-|+ |.+++++++.|+.+++|++.++| ...... +|...|..+ +|.++++.|+++
T Consensus 150 ~~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~-------~h~~~v~~~-~fs~d~~~l~s~ 221 (456)
T KOG0266|consen 150 LEQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELS-------GHTRGVSDV-AFSPDGSYLLSG 221 (456)
T ss_pred eeeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhcccc-------ccccceeee-EECCCCcEEEEe
Confidence 35677776 999999999 99999999999999999999999 555554 899999999 999999999999
Q ss_pred CCCccEEEEEc-cccceeeeeccCccceeE--ecccc----ccccccCcceEECcchhhh--ccccccccccCCCceeec
Q 000725 1079 NGFGEFGIWDI-SKRVLVSRFSAARASIYQ--FFPIN----LFSWQRNGSVSMDASLELT--NTATTSLFSKHSEKSSFC 1149 (1329)
Q Consensus 1079 SGDgtf~LWDI-skg~llqsF~ahs~sV~s--fsP~~----s~S~d~~v~tfd~~s~d~~--leatv~~fSgdvn~VsF~ 1149 (1329)
+.|++++|||+ ..+.++++|.+|...|++ |+|.+ ++++|++|++|+...+++. +.+|..++++ +.|.
T Consensus 222 s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~----~~f~ 297 (456)
T KOG0266|consen 222 SDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISG----LAFS 297 (456)
T ss_pred cCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEE----EEEC
Confidence 99999999999 566899999999999999 99999 9999999999999998777 5788888888 9999
Q ss_pred CCCCccceEEEEeeccCccchhhcccccc------cCCCCcceeEEEeeeccceecCCCCCCCceeeecCCCeEEeecCC
Q 000725 1150 PSVGEDSAIWLLVSTISDSDAQHNCMSRD------CQKNPVRFWRLALLVKNRVILGSPLDPRASAIGASSGLGIIGTND 1223 (1329)
Q Consensus 1150 P~sGeD~AiwLLVST~Sdd~t~~Dlra~~------~~gH~n~~wRLALl~K~siI~Gs~ldpra~afs~SG~~gfaGT~D 1223 (1329)
| | +..|++++.+...+.||+.... .++|.+.. .+ +.++|++.|.|+++|+.|
T Consensus 298 ~----d-~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~-~~----------------~~~~fsp~~~~ll~~~~d 355 (456)
T KOG0266|consen 298 P----D-GNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSA-PV----------------TSVQFSPNGKYLLSASLD 355 (456)
T ss_pred C----C-CCEEEEcCCCccEEEEECCCCceeeeecccCCCCCC-ce----------------eEEEECCCCcEEEEecCC
Confidence 9 7 6778877777777779998444 34444443 22 349999999999999999
Q ss_pred CeEEEEEccccceeeeeecccCceEEEE-EecCCCCceEEEecCCCCCCccccCC
Q 000725 1224 GLVYAWELSSGNKLGILHHFKGGTVSCI-ATDDSGLQALAVAGDGPDGGRRQRDP 1277 (1329)
Q Consensus 1224 GlVYmWDLstG~kL~tL~~Heg~rVSCV-A~dps~p~~~AsA~d~~d~~~r~~~~ 1277 (1329)
+.|.+||+.+++.+.+..+|.++ +.|+ +... -+++-.+-+++.|+++.+|++
T Consensus 356 ~~~~~w~l~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~i~sg~~d~~v~~~~~ 408 (456)
T KOG0266|consen 356 RTLKLWDLRSGKSVGTYTGHSNL-VRCIFSPTL-STGGKLIYSGSEDGSVYVWDS 408 (456)
T ss_pred CeEEEEEccCCcceeeecccCCc-ceeEecccc-cCCCCeEEEEeCCceEEEEeC
Confidence 99999999999999999999995 6666 2221 233344444455555555555
No 25
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.87 E-value=7.1e-21 Score=225.76 Aligned_cols=251 Identities=13% Similarity=0.045 Sum_probs=186.5
Q ss_pred cCCCCcEEEEEecCcceeeeEE-----Eecc-cceeEEEEe-cCCeEEEecCCCeEEEEeccCc---ce---EEEeeeee
Q 000725 986 RLDENAVKIVKVKPGYVSVVAK-----LKTD-DCVQCILVC-EPKHLIAVGESGKLHLWEMNSS---WS---AQVEECII 1052 (1329)
Q Consensus 986 ~seDNtVKIv~V~~G~vsll~k-----L~~h-~sV~cIlVc-DpnhLVSaSdDGkL~IWDM~Sg---Ws---m~tee~Vi 1052 (1329)
++.++-+|+|+..... +... +.+| ..|.+|.|. |.++|+++|.||+|+|||.++. +. ....+
T Consensus 454 ~~~~gl~~~~~~~~~~--~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~--- 528 (793)
T PLN00181 454 PFLEGLCKYLSFSKLR--VKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVE--- 528 (793)
T ss_pred hhhhhhhhhhcccceE--EEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEE---
Confidence 3556677778777643 3333 3447 789999999 9999999999999999997652 11 11111
Q ss_pred cCCCCcccceeEEEecCC-CCCeeEecCCCccEEEEEccccceeeeeccCccceeE--ecc-cc----ccccccCcceEE
Q 000725 1053 PINDCIYPCIVEMKRIPK-CAPLVVGHNGFGEFGIWDISKRVLVSRFSAARASIYQ--FFP-IN----LFSWQRNGSVSM 1124 (1329)
Q Consensus 1053 ~~n~~v~p~I~elKrFpk-ss~lIVTgSGDgtf~LWDIskg~llqsF~ahs~sV~s--fsP-~~----s~S~d~~v~tfd 1124 (1329)
. .....+..+ .+.+ ..++|++++.||+++|||+.+++.+..|.+|...|++ |.| ++ +++.|+.|++|+
T Consensus 529 ~---~~~~~v~~l-~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd 604 (793)
T PLN00181 529 L---ASRSKLSGI-CWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWS 604 (793)
T ss_pred e---cccCceeeE-EeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEE
Confidence 0 012235556 5543 4789999999999999999999999999999999999 887 43 789999999999
Q ss_pred Ccchhhhc-cccccccccCCCceeecCCCCccceEEEEeeccCccchhhcccc-----cccCCCCcceeEEEeeecccee
Q 000725 1125 DASLELTN-TATTSLFSKHSEKSSFCPSVGEDSAIWLLVSTISDSDAQHNCMS-----RDCQKNPVRFWRLALLVKNRVI 1198 (1329)
Q Consensus 1125 ~~s~d~~l-eatv~~fSgdvn~VsF~P~sGeD~AiwLLVST~Sdd~t~~Dlra-----~~~~gH~n~~wRLALl~K~siI 1198 (1329)
..++.... ..... .+..+.|.| .+ +.+|++++.+..+++||++. ..+.+|....+.++
T Consensus 605 ~~~~~~~~~~~~~~----~v~~v~~~~---~~-g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~-------- 668 (793)
T PLN00181 605 INQGVSIGTIKTKA----NICCVQFPS---ES-GRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVR-------- 668 (793)
T ss_pred CCCCcEEEEEecCC----CeEEEEEeC---CC-CCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEE--------
Confidence 98776542 11112 344488866 24 77889999999999999983 23456776666644
Q ss_pred cCCCCCCCceeeecCCCeEEeecCCCeEEEEEcccc------ceeeeeecccCceEEEEEecCCCCceEEEecCCCCCCc
Q 000725 1199 LGSPLDPRASAIGASSGLGIIGTNDGLVYAWELSSG------NKLGILHHFKGGTVSCIATDDSGLQALAVAGDGPDGGR 1272 (1329)
Q Consensus 1199 ~Gs~ldpra~afs~SG~~gfaGT~DGlVYmWDLstG------~kL~tL~~Heg~rVSCVA~dps~p~~~AsA~d~~d~~~ 1272 (1329)
|. .+.++++|+.|+.|++||+.++ +.+.++.+|.+ .|.+++++|.+.- +|+| +.|+++
T Consensus 669 -----------f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~-~i~~v~~s~~~~~-lasg--s~D~~v 732 (793)
T PLN00181 669 -----------FV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTN-VKNFVGLSVSDGY-IATG--SETNEV 732 (793)
T ss_pred -----------Ee-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCC-CeeEEEEcCCCCE-EEEE--eCCCEE
Confidence 43 5789999999999999999854 67889999999 8999999987654 6666 356666
Q ss_pred cccCC
Q 000725 1273 RQRDP 1277 (1329)
Q Consensus 1273 r~~~~ 1277 (1329)
++|+.
T Consensus 733 ~iw~~ 737 (793)
T PLN00181 733 FVYHK 737 (793)
T ss_pred EEEEC
Confidence 66665
No 26
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=2.3e-20 Score=203.21 Aligned_cols=272 Identities=14% Similarity=0.162 Sum_probs=220.1
Q ss_pred cccceeeecCCCcEEEEecCccCccccCCCccccccccccccCCCCcEEEEEecCcceeeeEEEecc-cceeEEEEe-cC
Q 000725 945 LERSCALFTPDGQYLVLLDSMKTPYCREGRSDCLCSTCTSHRLDENAVKIVKVKPGYVSVVAKLKTD-DCVQCILVC-EP 1022 (1329)
Q Consensus 945 ~ersglqFTPDGQ~LvLlgsik~p~CR~~~~dC~Cs~C~~s~seDNtVKIv~V~~G~vsll~kL~~h-~sV~cIlVc-Dp 1022 (1329)
=...+|.|++||++|+ .|++|.+|+||+...|. .+.++..+ ++|+.+.++ .+
T Consensus 15 ~~i~sl~fs~~G~~li------------------------tss~dDsl~LYd~~~g~--~~~ti~skkyG~~~~~Fth~~ 68 (311)
T KOG1446|consen 15 GKINSLDFSDDGLLLI------------------------TSSEDDSLRLYDSLSGK--QVKTINSKKYGVDLACFTHHS 68 (311)
T ss_pred CceeEEEecCCCCEEE------------------------EecCCCeEEEEEcCCCc--eeeEeecccccccEEEEecCC
Confidence 3567899999999999 89999999999999999 88888888 999999999 88
Q ss_pred CeEEEecC--CCeEEEEeccCcceEEEeeeeecCCCCcccceeEEEecCCCCCeeEecCCCccEEEEEccccceeeeecc
Q 000725 1023 KHLIAVGE--SGKLHLWEMNSSWSAQVEECIIPINDCIYPCIVEMKRIPKCAPLVVGHNGFGEFGIWDISKRVLVSRFSA 1100 (1329)
Q Consensus 1023 nhLVSaSd--DGkL~IWDM~SgWsm~tee~Vi~~n~~v~p~I~elKrFpkss~lIVTgSGDgtf~LWDIskg~llqsF~a 1100 (1329)
+.++.+|- |-+|+.-+|.+--.++.+- ||.-.|..| .+.+-+...|++|.|++++|||++.-+|.--...
T Consensus 69 ~~~i~sStk~d~tIryLsl~dNkylRYF~-------GH~~~V~sL-~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~ 140 (311)
T KOG1446|consen 69 NTVIHSSTKEDDTIRYLSLHDNKYLRYFP-------GHKKRVNSL-SVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNL 140 (311)
T ss_pred ceEEEccCCCCCceEEEEeecCceEEEcC-------CCCceEEEE-EecCCCCeEEecccCCeEEeeEecCCCCceEEec
Confidence 88888887 8899999999999888888 999999999 6666679999999999999999999999888888
Q ss_pred CccceeEecccc---cccccc-CcceEECcchhhh-c---cccccccccCCCceeecCCCCccceEEEEeeccCccchhh
Q 000725 1101 ARASIYQFFPIN---LFSWQR-NGSVSMDASLELT-N---TATTSLFSKHSEKSSFCPSVGEDSAIWLLVSTISDSDAQH 1172 (1329)
Q Consensus 1101 hs~sV~sfsP~~---s~S~d~-~v~tfd~~s~d~~-l---eatv~~fSgdvn~VsF~P~sGeD~AiwLLVST~Sdd~t~~ 1172 (1329)
.+-.|-+|-|.| +....+ .|++||.++-++- . ..... =...-+.+.|+| | |+.||+||..+-....
T Consensus 141 ~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~-~~~ew~~l~FS~----d-GK~iLlsT~~s~~~~l 214 (311)
T KOG1446|consen 141 SGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDN-DEAEWTDLEFSP----D-GKSILLSTNASFIYLL 214 (311)
T ss_pred CCCcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCC-CccceeeeEEcC----C-CCEEEEEeCCCcEEEE
Confidence 888888899998 222233 7889998888776 1 11100 111345599999 8 9999999999977775
Q ss_pred ccc----ccccCCCCcceeEEEeeeccceecCCCCCCCceeeecCCCeEEeecCCCeEEEEEccccceeeeeecccCceE
Q 000725 1173 NCM----SRDCQKNPVRFWRLALLVKNRVILGSPLDPRASAIGASSGLGIIGTNDGLVYAWELSSGNKLGILHHFKGGTV 1248 (1329)
Q Consensus 1173 Dlr----a~~~~gH~n~~wRLALl~K~siI~Gs~ldpra~afs~SG~~gfaGT~DGlVYmWDLstG~kL~tL~~Heg~rV 1248 (1329)
|-= ..+|++|++ ..-+-+. ++|+|.|.++++|++||+|+||.+.+|.+++.+.+..++.|
T Consensus 215 DAf~G~~~~tfs~~~~----------~~~~~~~------a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~ 278 (311)
T KOG1446|consen 215 DAFDGTVKSTFSGYPN----------AGNLPLS------ATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPV 278 (311)
T ss_pred EccCCcEeeeEeeccC----------CCCccee------EEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCc
Confidence 533 344444443 3333334 99999999999999999999999999999999999666699
Q ss_pred EEEEecCCCCceEEEecCCCCCCccccCC
Q 000725 1249 SCIATDDSGLQALAVAGDGPDGGRRQRDP 1277 (1329)
Q Consensus 1249 SCVA~dps~p~~~AsA~d~~d~~~r~~~~ 1277 (1329)
+|+...|--.. .|+| +..|-.|.|
T Consensus 279 ~~~~fnP~~~m-f~sa----~s~l~fw~p 302 (311)
T KOG1446|consen 279 SCVRFNPRYAM-FVSA----SSNLVFWLP 302 (311)
T ss_pred cccccCCceee-eeec----CceEEEEec
Confidence 99999965553 4555 456666666
No 27
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=3.2e-21 Score=226.90 Aligned_cols=234 Identities=14% Similarity=0.153 Sum_probs=196.2
Q ss_pred ccceeeecCCCcEEEEecCccCccccCCCccccccccccccCCCCcEEEEEecC--------cc----------------
Q 000725 946 ERSCALFTPDGQYLVLLDSMKTPYCREGRSDCLCSTCTSHRLDENAVKIVKVKP--------GY---------------- 1001 (1329)
Q Consensus 946 ersglqFTPDGQ~LvLlgsik~p~CR~~~~dC~Cs~C~~s~seDNtVKIv~V~~--------G~---------------- 1001 (1329)
..|.+.|++||+||| ++|+|+.||||.|.. |+
T Consensus 269 aIw~mKFS~DGKyLA------------------------saGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p 324 (712)
T KOG0283|consen 269 AIWAMKFSHDGKYLA------------------------SAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEP 324 (712)
T ss_pred cEEEEEeCCCCceee------------------------ecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCc
Confidence 578999999999999 999999999999876 11
Q ss_pred ----------------------------------eeeeEEEecc-cceeEEEEecCCeEEEecCCCeEEEEeccCcceEE
Q 000725 1002 ----------------------------------VSVVAKLKTD-DCVQCILVCEPKHLIAVGESGKLHLWEMNSSWSAQ 1046 (1329)
Q Consensus 1002 ----------------------------------vsll~kL~~h-~sV~cIlVcDpnhLVSaSdDGkL~IWDM~SgWsm~ 1046 (1329)
-.++..|+|| +.|.+|-|+.+++|.|+|.|.++++|+.-+.-+..
T Consensus 325 ~~s~~~~~~~~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~ 404 (712)
T KOG0283|consen 325 STSSEEKISSRTSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLK 404 (712)
T ss_pred cccccccccccccccccccCCccccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCcceee
Confidence 1467789999 99999999999999999999999999999998888
Q ss_pred EeeeeecCCCCcccceeEEEec-CCCCCeeEecCCCccEEEEEccccceeeeeccCccceeE--ecccc----ccccccC
Q 000725 1047 VEECIIPINDCIYPCIVEMKRI-PKCAPLVVGHNGFGEFGIWDISKRVLVSRFSAARASIYQ--FFPIN----LFSWQRN 1119 (1329)
Q Consensus 1047 tee~Vi~~n~~v~p~I~elKrF-pkss~lIVTgSGDgtf~LWDIskg~llqsF~ahs~sV~s--fsP~~----s~S~d~~ 1119 (1329)
|+. |--.+-++ .| |.++...|+||-||.||||+|.-.+-+-=+.-| ..|++ |.|+| -+++.|.
T Consensus 405 ~F~--------HndfVTcV-aFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~~G~ 474 (712)
T KOG0283|consen 405 VFS--------HNDFVTCV-AFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSPDGKGAVIGTFNGY 474 (712)
T ss_pred EEe--------cCCeeEEE-EecccCCCcEeecccccceEEeecCcCeeEeehhhh-hhheeEEeccCCceEEEEEeccE
Confidence 887 66677777 55 678999999999999999999999887777777 77777 99999 8899999
Q ss_pred cceEECcchhhhc-----ccccccccc-CCCceeecCCCCccceEEEEeeccCccchhhccc----ccccCCCCcceeEE
Q 000725 1120 GSVSMDASLELTN-----TATTSLFSK-HSEKSSFCPSVGEDSAIWLLVSTISDSDAQHNCM----SRDCQKNPVRFWRL 1189 (1329)
Q Consensus 1120 v~tfd~~s~d~~l-----eatv~~fSg-dvn~VsF~P~sGeD~AiwLLVST~Sdd~t~~Dlr----a~~~~gH~n~~wRL 1189 (1329)
|+.|++.+..... ..-+.-..+ .+-.+.|+|..-+ -+||+|+|.-+++||.| ..-|.|++|..=++
T Consensus 475 C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~----~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~ 550 (712)
T KOG0283|consen 475 CRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPD----EVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQI 550 (712)
T ss_pred EEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCC----eEEEecCCCceEEEeccchhhhhhhcccccCCcce
Confidence 9999999988871 110000111 2333899983222 79999999999999996 66788888888775
Q ss_pred EeeeccceecCCCCCCCceeeecCCCeEEeecCCCeEEEEEcccc
Q 000725 1190 ALLVKNRVILGSPLDPRASAIGASSGLGIIGTNDGLVYAWELSSG 1234 (1329)
Q Consensus 1190 ALl~K~siI~Gs~ldpra~afs~SG~~gfaGT~DGlVYmWDLstG 1234 (1329)
. +.|+..|.|+++|++|.-||+|++..-
T Consensus 551 ~-----------------Asfs~Dgk~IVs~seDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 551 S-----------------ASFSSDGKHIVSASEDSWVYIWKNDSF 578 (712)
T ss_pred e-----------------eeEccCCCEEEEeecCceEEEEeCCCC
Confidence 5 789999999999999999999998433
No 28
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=1.3e-20 Score=209.20 Aligned_cols=285 Identities=15% Similarity=0.203 Sum_probs=225.1
Q ss_pred EEEecc-cceeEEEEe-cCCeEEEecCCCeEEEEeccCcceEEEeeeeecCCCCcccceeEEEecCCCCCeeEecCCCcc
Q 000725 1006 AKLKTD-DCVQCILVC-EPKHLIAVGESGKLHLWEMNSSWSAQVEECIIPINDCIYPCIVEMKRIPKCAPLVVGHNGFGE 1083 (1329)
Q Consensus 1006 ~kL~~h-~sV~cIlVc-DpnhLVSaSdDGkL~IWDM~SgWsm~tee~Vi~~n~~v~p~I~elKrFpkss~lIVTgSGDgt 1083 (1329)
..+.|| +.|.|+.+. |..+|||+|.|-++++||..|-.-+.+-. +|.+-++++ ...+++..|++|+-||+
T Consensus 109 sS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~K-------gH~~WVlcv-awsPDgk~iASG~~dg~ 180 (480)
T KOG0271|consen 109 SSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCK-------GHKNWVLCV-AWSPDGKKIASGSKDGS 180 (480)
T ss_pred cccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeec-------CCccEEEEE-EECCCcchhhccccCCe
Confidence 457899 999999999 99999999999999999999977777766 899999999 99999999999999999
Q ss_pred EEEEEccccce-eeeeccCccceeE--ecccc---------ccccccCcceEECcchhhh--ccccccccccCCCceeec
Q 000725 1084 FGIWDISKRVL-VSRFSAARASIYQ--FFPIN---------LFSWQRNGSVSMDASLELT--NTATTSLFSKHSEKSSFC 1149 (1329)
Q Consensus 1084 f~LWDIskg~l-lqsF~ahs~sV~s--fsP~~---------s~S~d~~v~tfd~~s~d~~--leatv~~fSgdvn~VsF~ 1149 (1329)
|+|||-++|+. ...|.+|..-|++ +-|.. ++|=||+|++|++-.+.+. +-+|.++|.. |+.=
T Consensus 181 I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTC----vrwG 256 (480)
T KOG0271|consen 181 IRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTC----VRWG 256 (480)
T ss_pred EEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEE----EEEc
Confidence 99999999988 7899999999998 33433 7788999999999987766 4688888888 7653
Q ss_pred CCCCccceEEEEeeccCccchhhccc----ccccCCCCcceeEEEeeeccceecCCCCCCCceeeecCCCe---------
Q 000725 1150 PSVGEDSAIWLLVSTISDSDAQHNCM----SRDCQKNPVRFWRLALLVKNRVILGSPLDPRASAIGASSGL--------- 1216 (1329)
Q Consensus 1150 P~sGeD~AiwLLVST~Sdd~t~~Dlr----a~~~~gH~n~~wRLALl~K~siI~Gs~ldpra~afs~SG~~--------- 1216 (1329)
|++ ||+.|+-+-+++.|+.. ..+++||..|+=-|||-+ ..-.|+-||.+.|++
T Consensus 257 ---G~g---liySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsT--------dy~LRtgaf~~t~~~~~~~se~~~ 322 (480)
T KOG0271|consen 257 ---GEG---LIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALST--------DYVLRTGAFDHTGRKPKSFSEEQK 322 (480)
T ss_pred ---CCc---eEEecCCCceEEEEEccchhHHHhhcccchheeeeeccc--------hhhhhccccccccccCCChHHHHH
Confidence 455 88888888888888876 788999999998888632 333466677777777
Q ss_pred ----------------EEeecCCCeEEEEEccccc-eeeeeecccCceEEEEEecCCCCceEEEecCCCCCCccccCCCC
Q 000725 1217 ----------------GIIGTNDGLVYAWELSSGN-KLGILHHFKGGTVSCIATDDSGLQALAVAGDGPDGGRRQRDPRH 1279 (1329)
Q Consensus 1217 ----------------gfaGT~DGlVYmWDLstG~-kL~tL~~Heg~rVSCVA~dps~p~~~AsA~d~~d~~~r~~~~~~ 1279 (1329)
+++|++|++++||+=..-+ .+.+..+|+. .|--|.++|.+-- ||+| +-|..+|.|+-|.
T Consensus 323 ~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~-lVn~V~fSPd~r~-IASa--SFDkSVkLW~g~t 398 (480)
T KOG0271|consen 323 KALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQA-LVNHVSFSPDGRY-IASA--SFDKSVKLWDGRT 398 (480)
T ss_pred HHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhh-heeeEEECCCccE-EEEe--ecccceeeeeCCC
Confidence 9999999999999976655 7888999999 7999999966655 6666 4455555555444
Q ss_pred CCC-----CcEE-E----eeeCCCcceeecCCCCcccceEEEeeecc--ccccce
Q 000725 1280 GQN-----DHVR-I----WKMDPNLGCVRNSNGDSKFKQFQISIKET--KLPAHI 1322 (1329)
Q Consensus 1280 s~D-----~~VR-i----W~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 1322 (1329)
++= |||- | |-.|..| +-...-|+..|-|.+.-|.. .||.|-
T Consensus 399 Gk~lasfRGHv~~VYqvawsaDsRL--lVS~SkDsTLKvw~V~tkKl~~DLpGh~ 451 (480)
T KOG0271|consen 399 GKFLASFRGHVAAVYQVAWSADSRL--LVSGSKDSTLKVWDVRTKKLKQDLPGHA 451 (480)
T ss_pred cchhhhhhhccceeEEEEeccCccE--EEEcCCCceEEEEEeeeeeecccCCCCC
Confidence 432 2321 1 2222222 22334688899999888764 478773
No 29
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.84 E-value=2.4e-19 Score=209.78 Aligned_cols=336 Identities=18% Similarity=0.203 Sum_probs=247.3
Q ss_pred ceEEEEEEeeeCCCCCCCCceeecccccccccccccccccccccceeeecCCCcEEEEecCccCccccCCCccccccccc
Q 000725 904 KRTLFIYTVDIQEPRVGNPSCVGHTSVMLPFLKDNFGREIALERSCALFTPDGQYLVLLDSMKTPYCREGRSDCLCSTCT 983 (1329)
Q Consensus 904 ~r~Lf~Yki~i~~~~~~~p~~vg~t~~llp~~~~~~~~~~~~ersglqFTPDGQ~LvLlgsik~p~CR~~~~dC~Cs~C~ 983 (1329)
++.|-+|+. +++-+...|-|+=|.--+.+| .+..++.|+-|.++|+
T Consensus 116 gn~lqiw~~-P~~~~~~~~pFvl~r~~~g~f----------ddi~si~Ws~DSr~l~----------------------- 161 (893)
T KOG0291|consen 116 GNLLQIWHA-PGEIKNEFNPFVLHRTYLGHF----------DDITSIDWSDDSRLLV----------------------- 161 (893)
T ss_pred cceeEEEec-CcchhcccCcceEeeeecCCc----------cceeEEEeccCCceEE-----------------------
Confidence 455666664 333333445555555444443 4678899999999999
Q ss_pred cccCCCCcEEEEEecCcceeeeEEEecc--cceeEEEEecCCeEEEecCCCeEEEEecc----C----------------
Q 000725 984 SHRLDENAVKIVKVKPGYVSVVAKLKTD--DCVQCILVCEPKHLIAVGESGKLHLWEMN----S---------------- 1041 (1329)
Q Consensus 984 ~s~seDNtVKIv~V~~G~vsll~kL~~h--~sV~cIlVcDpnhLVSaSdDGkL~IWDM~----S---------------- 1041 (1329)
++|.|-++|||.|+.-.-=....|.|| +=|-|+.-.|..+|+++|+||.|.+|... .
T Consensus 162 -~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~ 240 (893)
T KOG0291|consen 162 -TGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEM 240 (893)
T ss_pred -eccccceEEEEEeccccccceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCcccccccccccccccccc
Confidence 999999999999976442246788999 55667777799999999999999999855 1
Q ss_pred -----------cceEEEee--------------------------------eeecCCCCc-----c-cceeEEEecCCCC
Q 000725 1042 -----------SWSAQVEE--------------------------------CIIPINDCI-----Y-PCIVEMKRIPKCA 1072 (1329)
Q Consensus 1042 -----------gWsm~tee--------------------------------~Vi~~n~~v-----~-p~I~elKrFpkss 1072 (1329)
-|....-+ |.+|+.-++ + ..|..+ .|+.-+
T Consensus 241 ~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~-~~N~tG 319 (893)
T KOG0291|consen 241 DEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTV-SFNSTG 319 (893)
T ss_pred cccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEE-EecccC
Confidence 23333111 112333331 1 222223 777666
Q ss_pred CeeE-ecCCCccEEEEEccccceeeeeccCccceeE--ecccc----ccccccCcceEECcchhhh--ccccccccccCC
Q 000725 1073 PLVV-GHNGFGEFGIWDISKRVLVSRFSAARASIYQ--FFPIN----LFSWQRNGSVSMDASLELT--NTATTSLFSKHS 1143 (1329)
Q Consensus 1073 ~lIV-TgSGDgtf~LWDIskg~llqsF~ahs~sV~s--fsP~~----s~S~d~~v~tfd~~s~d~~--leatv~~fSgdv 1143 (1329)
..|+ +|+.-|-+-+|+..+-+-+-.-.||...+.+ ++|++ ++.=||+|++|+..++=|. ...|...|.+
T Consensus 320 DWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~-- 397 (893)
T KOG0291|consen 320 DWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTA-- 397 (893)
T ss_pred CEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEE--
Confidence 6664 5556689999999999999999999999999 99998 8899999999999998888 5778888888
Q ss_pred CceeecCCCCccceEEEEeeccCccchhhcccccccCCCCcceeEEEeeeccceecCCCCCCCceeeecCCCeEEeecCC
Q 000725 1144 EKSSFCPSVGEDSAIWLLVSTISDSDAQHNCMSRDCQKNPVRFWRLALLVKNRVILGSPLDPRASAIGASSGLGIIGTND 1223 (1329)
Q Consensus 1144 n~VsF~P~sGeD~AiwLLVST~Sdd~t~~Dlra~~~~gH~n~~wRLALl~K~siI~Gs~ldpra~afs~SG~~gfaGT~D 1223 (1329)
+.|+- . +.-||.|+++.+.+.||+.-.+ .+| .+-.++.+=|-+ +|..+||-++++|+-|
T Consensus 398 --v~f~~----~-g~~llssSLDGtVRAwDlkRYr-------NfR-Tft~P~p~Qfsc------vavD~sGelV~AG~~d 456 (893)
T KOG0291|consen 398 --VQFTA----R-GNVLLSSSLDGTVRAWDLKRYR-------NFR-TFTSPEPIQFSC------VAVDPSGELVCAGAQD 456 (893)
T ss_pred --EEEEe----c-CCEEEEeecCCeEEeeeecccc-------eee-eecCCCceeeeE------EEEcCCCCEEEeeccc
Confidence 99997 4 7789999999999999997332 222 122333344444 8899999999999988
Q ss_pred C-eEEEEEccccceeeeeecccCceEEEEEecCCCCceEEEecCCCCCCccccCCCCC--CCCcEEEeeeCCCc------
Q 000725 1224 G-LVYAWELSSGNKLGILHHFKGGTVSCIATDDSGLQALAVAGDGPDGGRRQRDPRHG--QNDHVRIWKMDPNL------ 1294 (1329)
Q Consensus 1224 G-lVYmWDLstG~kL~tL~~Heg~rVSCVA~dps~p~~~AsA~d~~d~~~r~~~~~~s--~D~~VRiW~~~~~~------ 1294 (1329)
- .||||++.||+-+..|.||+| -|++++++|.++- +| +++||.|+|+|++-.+ +=-+++|-.+.-++
T Consensus 457 ~F~IfvWS~qTGqllDiLsGHEg-PVs~l~f~~~~~~-La--S~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG 532 (893)
T KOG0291|consen 457 SFEIFVWSVQTGQLLDILSGHEG-PVSGLSFSPDGSL-LA--SGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDG 532 (893)
T ss_pred eEEEEEEEeecCeeeehhcCCCC-cceeeEEccccCe-EE--eccccceEEEEEeeccCceeeeEeeccceeEEEEcCCC
Confidence 5 799999999999999999999 8999999977663 55 4589999999998555 33455555543322
Q ss_pred --ceeecCCC
Q 000725 1295 --GCVRNSNG 1302 (1329)
Q Consensus 1295 --~~~~~~~~ 1302 (1329)
-||-..+|
T Consensus 533 ~elaVaTldg 542 (893)
T KOG0291|consen 533 KELAVATLDG 542 (893)
T ss_pred CeEEEEEecc
Confidence 36666665
No 30
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.84 E-value=5.2e-20 Score=204.25 Aligned_cols=268 Identities=12% Similarity=0.114 Sum_probs=219.6
Q ss_pred cceeeecCCCcEEEEecCccCccccCCCccccccccccccCCCCcEEEEEecCcceeeeEEEecc-cceeEEEEe--cCC
Q 000725 947 RSCALFTPDGQYLVLLDSMKTPYCREGRSDCLCSTCTSHRLDENAVKIVKVKPGYVSVVAKLKTD-DCVQCILVC--EPK 1023 (1329)
Q Consensus 947 rsglqFTPDGQ~LvLlgsik~p~CR~~~~dC~Cs~C~~s~seDNtVKIv~V~~G~vsll~kL~~h-~sV~cIlVc--Dpn 1023 (1329)
-|+|+.+ +.+++ +++-|+++|||+.+ |. ...++.|| +.+..+.+- ++.
T Consensus 108 VSsv~~~--~~~Il------------------------tgsYDg~~riWd~~-Gk--~~~~~~Ght~~ik~v~~v~~n~~ 158 (423)
T KOG0313|consen 108 VSSVKGA--SKWIL------------------------TGSYDGTSRIWDLK-GK--SIKTIVGHTGPIKSVAWVIKNSS 158 (423)
T ss_pred hhhhccc--CceEE------------------------EeecCCeeEEEecC-Cc--eEEEEecCCcceeeeEEEecCCc
Confidence 3678888 56999 99999999999986 55 79999999 888855444 433
Q ss_pred --eEEEecCCCeEEEEeccCcceEEEeeeeecCCCCcccceeEEEecCCCCCeeEecCCCccEEEEE-------------
Q 000725 1024 --HLIAVGESGKLHLWEMNSSWSAQVEECIIPINDCIYPCIVEMKRIPKCAPLVVGHNGFGEFGIWD------------- 1088 (1329)
Q Consensus 1024 --hLVSaSdDGkL~IWDM~SgWsm~tee~Vi~~n~~v~p~I~elKrFpkss~lIVTgSGDgtf~LWD------------- 1088 (1329)
.+|++|+|++|.+|-.+-+-.+-... .-..||-..+-.+ ...+++..+++||.|.++.||+
T Consensus 159 ~~~fvsas~Dqtl~Lw~~~~~~~~~~~~---~~~~GHk~~V~sV-sv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s 234 (423)
T KOG0313|consen 159 SCLFVSASMDQTLRLWKWNVGENKVKAL---KVCRGHKRSVDSV-SVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSS 234 (423)
T ss_pred cceEEEecCCceEEEEEecCchhhhhHH---hHhcccccceeEE-EecCCCCeEEeecccceeeecccCCCccccccccc
Confidence 59999999999999977766655444 1222788888888 9999999999999999999999
Q ss_pred ------------ccccceeeeeccCccceeE--ecccc---ccccccCcceEECcchhhh-ccccccccccCCCceeecC
Q 000725 1089 ------------ISKRVLVSRFSAARASIYQ--FFPIN---LFSWQRNGSVSMDASLELT-NTATTSLFSKHSEKSSFCP 1150 (1329)
Q Consensus 1089 ------------Iskg~llqsF~ahs~sV~s--fsP~~---s~S~d~~v~tfd~~s~d~~-leatv~~fSgdvn~VsF~P 1150 (1329)
...|..+-++.||...|.+ |.|-+ ++|||-+|++||+..+-+. ...|+-.|.. +.++|
T Consensus 235 ~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~----i~~~~ 310 (423)
T KOG0313|consen 235 NRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNC----ISYSP 310 (423)
T ss_pred hhhhhhhhhhhcccccCceEEecccccceeeEEEcCCCceEeecccceEEEEEeecccceeeeecCcceeE----eeccc
Confidence 2245668999999999999 55544 8999999999999999988 4677777877 99999
Q ss_pred CCCccceEEEEeeccCccchhhccc-------ccccCCCCcceeEEEeeeccceecCCCCCCCceeeecC-CCeEEeecC
Q 000725 1151 SVGEDSAIWLLVSTISDSDAQHNCM-------SRDCQKNPVRFWRLALLVKNRVILGSPLDPRASAIGAS-SGLGIIGTN 1222 (1329)
Q Consensus 1151 ~sGeD~AiwLLVST~Sdd~t~~Dlr-------a~~~~gH~n~~wRLALl~K~siI~Gs~ldpra~afs~S-G~~gfaGT~ 1222 (1329)
. ...|+.|+.+-..++||-| ..+|.||.|++-. +.-+|. --++++|++
T Consensus 311 ----~-~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVss-------------------vkwsp~~~~~~~S~S~ 366 (423)
T KOG0313|consen 311 ----L-SKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSS-------------------VKWSPTNEFQLVSGSY 366 (423)
T ss_pred ----c-cceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhh-------------------eecCCCCceEEEEEec
Confidence 5 5677777888888999999 7789999995433 344444 456789999
Q ss_pred CCeEEEEEccccc-eeeeeecccCceEEEEEecCCCCceEEEecCCCCCCccccCCCCCCCCcEEEeeeCCC
Q 000725 1223 DGLVYAWELSSGN-KLGILHHFKGGTVSCIATDDSGLQALAVAGDGPDGGRRQRDPRHGQNDHVRIWKMDPN 1293 (1329)
Q Consensus 1223 DGlVYmWDLstG~-kL~tL~~Heg~rVSCVA~dps~p~~~AsA~d~~d~~~r~~~~~~s~D~~VRiW~~~~~ 1293 (1329)
||+++|||+-+.+ -|-.+++|++ +|-||.-. ++.++++| |+|.+|||.+..+-
T Consensus 367 D~t~klWDvRS~k~plydI~~h~D-Kvl~vdW~--~~~~IvSG---------------GaD~~l~i~~~~~~ 420 (423)
T KOG0313|consen 367 DNTVKLWDVRSTKAPLYDIAGHND-KVLSVDWN--EGGLIVSG---------------GADNKLRIFKGSPI 420 (423)
T ss_pred CCeEEEEEeccCCCcceeeccCCc-eEEEEecc--CCceEEec---------------cCcceEEEeccccc
Confidence 9999999999988 9999999999 99998887 34457888 89999999987663
No 31
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.84 E-value=1.6e-20 Score=209.45 Aligned_cols=275 Identities=18% Similarity=0.205 Sum_probs=224.5
Q ss_pred cceeeecCCCcEEEEecCccCccccCCCccccccccccccCCCCcEEEEEecCcceeeeEEEecc-cceeEEEEe-cCCe
Q 000725 947 RSCALFTPDGQYLVLLDSMKTPYCREGRSDCLCSTCTSHRLDENAVKIVKVKPGYVSVVAKLKTD-DCVQCILVC-EPKH 1024 (1329)
Q Consensus 947 rsglqFTPDGQ~LvLlgsik~p~CR~~~~dC~Cs~C~~s~seDNtVKIv~V~~G~vsll~kL~~h-~sV~cIlVc-Dpnh 1024 (1329)
-..|+|||+|+.|+ ++++.+.+-+|+-.+=. --+-|.+| ..|+++-|+ +.+.
T Consensus 99 V~~v~WtPeGRRLl------------------------tgs~SGEFtLWNg~~fn--FEtilQaHDs~Vr~m~ws~~g~w 152 (464)
T KOG0284|consen 99 VNVVRWTPEGRRLL------------------------TGSQSGEFTLWNGTSFN--FETILQAHDSPVRTMKWSHNGTW 152 (464)
T ss_pred eeeEEEcCCCceeE------------------------eecccccEEEecCceee--HHHHhhhhcccceeEEEccCCCE
Confidence 34689999999999 99999999999985544 44568899 899999999 9999
Q ss_pred EEEecCCCeEEEEe--ccCcceEEEeeeeecCCCC-cccceeEEEecCCCCCeeEecCCCccEEEEEccccceeeeeccC
Q 000725 1025 LIAVGESGKLHLWE--MNSSWSAQVEECIIPINDC-IYPCIVEMKRIPKCAPLVVGHNGFGEFGIWDISKRVLVSRFSAA 1101 (1329)
Q Consensus 1025 LVSaSdDGkL~IWD--M~SgWsm~tee~Vi~~n~~-v~p~I~elKrFpkss~lIVTgSGDgtf~LWDIskg~llqsF~ah 1101 (1329)
+||+.++|.|++|+ |+--= .... |.-.|-+| +|.+.++..+|+|.||+++|||-.-..--+.+.||
T Consensus 153 miSgD~gG~iKyWqpnmnnVk----------~~~ahh~eaIRdl-afSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GH 221 (464)
T KOG0284|consen 153 MISGDKGGMIKYWQPNMNNVK----------IIQAHHAEAIRDL-AFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGH 221 (464)
T ss_pred EEEcCCCceEEecccchhhhH----------HhhHhhhhhhhee-ccCCCCceeEEecCCCeEEEEeccCCchhheeccC
Confidence 99999999999999 44311 1112 33557778 99999999999999999999999998888888999
Q ss_pred ccceeE--ecccc----ccccccCcceEECcchhhh--ccccccccccCCCceeecCCCCccceEEEEeeccCccchhhc
Q 000725 1102 RASIYQ--FFPIN----LFSWQRNGSVSMDASLELT--NTATTSLFSKHSEKSSFCPSVGEDSAIWLLVSTISDSDAQHN 1173 (1329)
Q Consensus 1102 s~sV~s--fsP~~----s~S~d~~v~tfd~~s~d~~--leatv~~fSgdvn~VsF~P~sGeD~AiwLLVST~Sdd~t~~D 1173 (1329)
+.+|-+ .-|.- +++=|..|++||..++.+. +..|++.|-+ +.|.| + +.|||..+.|-..+.||
T Consensus 222 gwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~----~~f~~----n-~N~Llt~skD~~~kv~D 292 (464)
T KOG0284|consen 222 GWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLA----VKFNP----N-GNWLLTGSKDQSCKVFD 292 (464)
T ss_pred CCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEE----EEEcC----C-CCeeEEccCCceEEEEe
Confidence 999999 56655 7888999999999999998 5688888888 99999 6 59999766666666699
Q ss_pred cc----ccccCCCCcceeEEEeeeccceecCCCCCCCceeeecCCCeEEeecCCCeEEEEEccccceeeee-ecccCceE
Q 000725 1174 CM----SRDCQKNPVRFWRLALLVKNRVILGSPLDPRASAIGASSGLGIIGTNDGLVYAWELSSGNKLGIL-HHFKGGTV 1248 (1329)
Q Consensus 1174 lr----a~~~~gH~n~~wRLALl~K~siI~Gs~ldpra~afs~SG~~gfaGT~DGlVYmWDLstG~kL~tL-~~Heg~rV 1248 (1329)
+| +..|.+|.-..|+++- .| ..-.++.+|..||-|+.|.+-.-+-+..+ ++|.+ .|
T Consensus 293 iR~mkEl~~~r~Hkkdv~~~~W---------hP---------~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~-~i 353 (464)
T KOG0284|consen 293 IRTMKELFTYRGHKKDVTSLTW---------HP---------LNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDG-EI 353 (464)
T ss_pred hhHhHHHHHhhcchhhheeecc---------cc---------ccccceeeccCCCceEEEeccccccccCCCccccc-ce
Confidence 99 7789999999999753 12 24567889999999999999966666666 79999 79
Q ss_pred EEEEecCCCCceEEEecCCCCCCccccCCCCCCCCcEEEeee----CCCcceeecCCC
Q 000725 1249 SCIATDDSGLQALAVAGDGPDGGRRQRDPRHGQNDHVRIWKM----DPNLGCVRNSNG 1302 (1329)
Q Consensus 1249 SCVA~dps~p~~~AsA~d~~d~~~r~~~~~~s~D~~VRiW~~----~~~~~~~~~~~~ 1302 (1329)
+++++||-+.. +|+| |.|++||.|.- |+|-+-++-+++
T Consensus 354 wsl~~hPlGhi-l~tg---------------snd~t~rfw~r~rp~d~~~~~~~~~~~ 395 (464)
T KOG0284|consen 354 WSLAYHPLGHI-LATG---------------SNDRTVRFWTRNRPGDKNADDVGLSNN 395 (464)
T ss_pred eeeecccccee-Eeec---------------CCCcceeeeccCCCCCccccccccccc
Confidence 99999988877 7776 78888888864 334444444443
No 32
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=1.2e-19 Score=209.43 Aligned_cols=265 Identities=15% Similarity=0.152 Sum_probs=219.3
Q ss_pred ceeeecCCCcEEEEecCccCccccCCCccccccccccccCCCCcEEEEEecCcceeeeEEEecc-cceeEEEE-ecCCeE
Q 000725 948 SCALFTPDGQYLVLLDSMKTPYCREGRSDCLCSTCTSHRLDENAVKIVKVKPGYVSVVAKLKTD-DCVQCILV-CEPKHL 1025 (1329)
Q Consensus 948 sglqFTPDGQ~LvLlgsik~p~CR~~~~dC~Cs~C~~s~seDNtVKIv~V~~G~vsll~kL~~h-~sV~cIlV-cDpnhL 1025 (1329)
-+++|.|---.++ ..--.+.|-||+-++-. ++..|+-. -.|+.-.+ .-++.+
T Consensus 17 KsVd~HPtePw~l------------------------a~LynG~V~IWnyetqt--mVksfeV~~~PvRa~kfiaRknWi 70 (794)
T KOG0276|consen 17 KSVDFHPTEPWIL------------------------AALYNGDVQIWNYETQT--MVKSFEVSEVPVRAAKFIARKNWI 70 (794)
T ss_pred eeeecCCCCceEE------------------------EeeecCeeEEEecccce--eeeeeeecccchhhheeeeccceE
Confidence 3677877766666 44456789999999966 88888777 56665444 499999
Q ss_pred EEecCCCeEEEEeccCcceEEEeeeeecCCCCcccceeEEEecCCCCCeeEecCCCccEEEEEccccc-eeeeeccCccc
Q 000725 1026 IAVGESGKLHLWEMNSSWSAQVEECIIPINDCIYPCIVEMKRIPKCAPLVVGHNGFGEFGIWDISKRV-LVSRFSAARAS 1104 (1329)
Q Consensus 1026 VSaSdDGkL~IWDM~SgWsm~tee~Vi~~n~~v~p~I~elKrFpkss~lIVTgSGDgtf~LWDIskg~-llqsF~ahs~s 1104 (1329)
|++|||.+|+|+..+|+-.+..++ -|.-.|-++ .+.+-...|+|+|-|++|++||-++.= |.|+|+||+--
T Consensus 71 v~GsDD~~IrVfnynt~ekV~~Fe-------AH~DyIR~i-avHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~Hy 142 (794)
T KOG0276|consen 71 VTGSDDMQIRVFNYNTGEKVKTFE-------AHSDYIRSI-AVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHY 142 (794)
T ss_pred EEecCCceEEEEecccceeeEEee-------ccccceeee-eecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceE
Confidence 999999999999999999999999 899999999 999999999999999999999999885 59999999999
Q ss_pred eeE--ecccc-----ccccccCcceEECcchhhh--ccccccccccCCCceeecCCCCccceEEEEeeccCccchhhccc
Q 000725 1105 IYQ--FFPIN-----LFSWQRNGSVSMDASLELT--NTATTSLFSKHSEKSSFCPSVGEDSAIWLLVSTISDSDAQHNCM 1175 (1329)
Q Consensus 1105 V~s--fsP~~-----s~S~d~~v~tfd~~s~d~~--leatv~~fSgdvn~VsF~P~sGeD~AiwLLVST~Sdd~t~~Dlr 1175 (1329)
||+ |+|.. ++|+|++|++|..++-... |++|.. .+|.|.|.| |.| .-+|..++.+-+++.||+.
T Consensus 143 VMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHek----GVN~Vdyy~--~gd-kpylIsgaDD~tiKvWDyQ 215 (794)
T KOG0276|consen 143 VMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEK----GVNCVDYYT--GGD-KPYLISGADDLTIKVWDYQ 215 (794)
T ss_pred EEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeecccc----CcceEEecc--CCC-cceEEecCCCceEEEeecc
Confidence 999 99988 8999999999999999888 565554 566699998 555 4455555555566669999
Q ss_pred c----cccCCCCcceeEEEeeeccceecCCCCCCCceeeecCCCeEEeecCCCeEEEEEccccceeeeeecccCceEEEE
Q 000725 1176 S----RDCQKNPVRFWRLALLVKNRVILGSPLDPRASAIGASSGLGIIGTNDGLVYAWELSSGNKLGILHHFKGGTVSCI 1251 (1329)
Q Consensus 1176 a----~~~~gH~n~~wRLALl~K~siI~Gs~ldpra~afs~SG~~gfaGT~DGlVYmWDLstG~kL~tL~~Heg~rVSCV 1251 (1329)
. .+..||.+..=. ++|-|.=.++++|++||+|++|--.|=+--.+|- ...+||+||
T Consensus 216 tk~CV~TLeGHt~Nvs~-------------------v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn-~gleRvW~I 275 (794)
T KOG0276|consen 216 TKSCVQTLEGHTNNVSF-------------------VFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLN-YGLERVWCI 275 (794)
T ss_pred hHHHHHHhhcccccceE-------------------EEecCCCcEEEEecCCccEEEecCcceehhhhhh-cCCceEEEE
Confidence 4 455788887654 8899999999999999999999988876666654 444499999
Q ss_pred EecCCCCceEEEecCCCCCCccc
Q 000725 1252 ATDDSGLQALAVAGDGPDGGRRQ 1274 (1329)
Q Consensus 1252 A~dps~p~~~AsA~d~~d~~~r~ 1274 (1329)
+.+++... +|++-|.+.-++++
T Consensus 276 ~~~k~~~~-i~vG~Deg~i~v~l 297 (794)
T KOG0276|consen 276 AAHKGDGK-IAVGFDEGSVTVKL 297 (794)
T ss_pred eecCCCCe-EEEeccCCcEEEEc
Confidence 99977766 99998877665543
No 33
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.83 E-value=1.1e-19 Score=197.35 Aligned_cols=221 Identities=14% Similarity=0.166 Sum_probs=191.3
Q ss_pred eeeecCCCcEEEEecCccCccccCCCccccccccccccCCCCcEEEEEec----CcceeeeEEEecc-cceeEEEEecCC
Q 000725 949 CALFTPDGQYLVLLDSMKTPYCREGRSDCLCSTCTSHRLDENAVKIVKVK----PGYVSVVAKLKTD-DCVQCILVCEPK 1023 (1329)
Q Consensus 949 glqFTPDGQ~LvLlgsik~p~CR~~~~dC~Cs~C~~s~seDNtVKIv~V~----~G~vsll~kL~~h-~sV~cIlVcDpn 1023 (1329)
-.+|+|.|++++ -++.||..-||+++ .|.+-+...|.+| .-|+|.-+.|-+
T Consensus 102 tCA~sPSg~~VA------------------------cGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~ 157 (343)
T KOG0286|consen 102 TCAYSPSGNFVA------------------------CGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDN 157 (343)
T ss_pred EEEECCCCCeEE------------------------ecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCC
Confidence 358999999999 79999999999988 6777788889999 899999999999
Q ss_pred eEEEecCCCeEEEEeccCcceEEEeeeeecCCCCcccceeEEEecCC-CCCeeEecCCCccEEEEEccccceeeeeccCc
Q 000725 1024 HLIAVGESGKLHLWEMNSSWSAQVEECIIPINDCIYPCIVEMKRIPK-CAPLVVGHNGFGEFGIWDISKRVLVSRFSAAR 1102 (1329)
Q Consensus 1024 hLVSaSdDGkL~IWDM~SgWsm~tee~Vi~~n~~v~p~I~elKrFpk-ss~lIVTgSGDgtf~LWDIskg~llqsF~ahs 1102 (1329)
||+++|.|.+..+||+++|=..+.+- +|..-||.| .+++ +++..|+|+.|++-.|||++.+.++|+|++|.
T Consensus 158 ~ilT~SGD~TCalWDie~g~~~~~f~-------GH~gDV~sl-sl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghe 229 (343)
T KOG0286|consen 158 HILTGSGDMTCALWDIETGQQTQVFH-------GHTGDVMSL-SLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHE 229 (343)
T ss_pred ceEecCCCceEEEEEcccceEEEEec-------CCcccEEEE-ecCCCCCCeEEecccccceeeeeccCcceeEeecccc
Confidence 99999999999999999999999988 999999999 8888 99999999999999999999999999999999
Q ss_pred cceeE--ecccc----ccccccCcceEECcchhhh-c---cccccccccCCCceeecCCCCccceEEEEeeccCccchhh
Q 000725 1103 ASIYQ--FFPIN----LFSWQRNGSVSMDASLELT-N---TATTSLFSKHSEKSSFCPSVGEDSAIWLLVSTISDSDAQH 1172 (1329)
Q Consensus 1103 ~sV~s--fsP~~----s~S~d~~v~tfd~~s~d~~-l---eatv~~fSgdvn~VsF~P~sGeD~AiwLLVST~Sdd~t~~ 1172 (1329)
.+|.+ |+|++ ++|=|+++|.||++.-... . +.-.. .+++|.|+- . |..||.+-.+-.-..|
T Consensus 230 sDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~----gitSv~FS~----S-GRlLfagy~d~~c~vW 300 (343)
T KOG0286|consen 230 SDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIIC----GITSVAFSK----S-GRLLFAGYDDFTCNVW 300 (343)
T ss_pred cccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccC----CceeEEEcc----c-ccEEEeeecCCceeEe
Confidence 99999 99999 8999999999999875444 1 22233 455699996 3 7778876544444449
Q ss_pred ccc----ccccCCCCcceeEEEeeeccceecCCCCCCCceeeecCCCeEEeecCCCeEEEE
Q 000725 1173 NCM----SRDCQKNPVRFWRLALLVKNRVILGSPLDPRASAIGASSGLGIIGTNDGLVYAW 1229 (1329)
Q Consensus 1173 Dlr----a~~~~gH~n~~wRLALl~K~siI~Gs~ldpra~afs~SG~~gfaGT~DGlVYmW 1229 (1329)
|-- .-...||-||+-+|. +++.|--+.+|+-|.+|++|
T Consensus 301 Dtlk~e~vg~L~GHeNRvScl~-------------------~s~DG~av~TgSWDs~lriW 342 (343)
T KOG0286|consen 301 DTLKGERVGVLAGHENRVSCLG-------------------VSPDGMAVATGSWDSTLRIW 342 (343)
T ss_pred eccccceEEEeeccCCeeEEEE-------------------ECCCCcEEEecchhHheeec
Confidence 976 444568888887755 58899999999999999999
No 34
>PTZ00421 coronin; Provisional
Probab=99.83 E-value=1.6e-19 Score=207.34 Aligned_cols=224 Identities=12% Similarity=0.066 Sum_probs=159.0
Q ss_pred cceeeecC-CCcEEEEecCccCccccCCCccccccccccccCCCCcEEEEEecCcce-----eeeEEEecc-cceeEEEE
Q 000725 947 RSCALFTP-DGQYLVLLDSMKTPYCREGRSDCLCSTCTSHRLDENAVKIVKVKPGYV-----SVVAKLKTD-DCVQCILV 1019 (1329)
Q Consensus 947 rsglqFTP-DGQ~LvLlgsik~p~CR~~~~dC~Cs~C~~s~seDNtVKIv~V~~G~v-----sll~kL~~h-~sV~cIlV 1019 (1329)
-.+++|+| ||++|+ ++|+|++||||++.++.. +++.+|.+| ..|.+|.|
T Consensus 78 V~~v~fsP~d~~~La------------------------SgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f 133 (493)
T PTZ00421 78 IIDVAFNPFDPQKLF------------------------TASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSF 133 (493)
T ss_pred EEEEEEcCCCCCEEE------------------------EEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEe
Confidence 46889999 999999 999999999999987632 578899999 89999999
Q ss_pred e-c-CCeEEEecCCCeEEEEeccCcceEEEeeeeecCCCCcccceeEEEecCCCCCeeEecCCCccEEEEEccccceeee
Q 000725 1020 C-E-PKHLIAVGESGKLHLWEMNSSWSAQVEECIIPINDCIYPCIVEMKRIPKCAPLVVGHNGFGEFGIWDISKRVLVSR 1097 (1329)
Q Consensus 1020 c-D-pnhLVSaSdDGkL~IWDM~SgWsm~tee~Vi~~n~~v~p~I~elKrFpkss~lIVTgSGDgtf~LWDIskg~llqs 1097 (1329)
. + +++|+|+|.||+|+|||+.++-...... +|...|..+ .|.+++++|++++.|++++|||+.+++.+.+
T Consensus 134 ~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~-------~h~~~V~sl-a~spdG~lLatgs~Dg~IrIwD~rsg~~v~t 205 (493)
T PTZ00421 134 HPSAMNVLASAGADMVVNVWDVERGKAVEVIK-------CHSDQITSL-EWNLDGSLLCTTSKDKKLNIIDPRDGTIVSS 205 (493)
T ss_pred CcCCCCEEEEEeCCCEEEEEECCCCeEEEEEc-------CCCCceEEE-EEECCCCEEEEecCCCEEEEEECCCCcEEEE
Confidence 9 4 5799999999999999999987666655 788889999 9999999999999999999999999999999
Q ss_pred eccCccceeE---eccccccccccCcceEECcchhhhccccccccccCCCceeecCCCCccceEEEEeeccCccchhhcc
Q 000725 1098 FSAARASIYQ---FFPINLFSWQRNGSVSMDASLELTNTATTSLFSKHSEKSSFCPSVGEDSAIWLLVSTISDSDAQHNC 1174 (1329)
Q Consensus 1098 F~ahs~sV~s---fsP~~s~S~d~~v~tfd~~s~d~~leatv~~fSgdvn~VsF~P~sGeD~AiwLLVST~Sdd~t~~Dl 1174 (1329)
+.+|...+.+ +.|..- .++. +.|.. +.+...++||+
T Consensus 206 l~~H~~~~~~~~~w~~~~~-------~ivt---------------------~G~s~-------------s~Dr~VklWDl 244 (493)
T PTZ00421 206 VEAHASAKSQRCLWAKRKD-------LIIT---------------------LGCSK-------------SQQRQIMLWDT 244 (493)
T ss_pred EecCCCCcceEEEEcCCCC-------eEEE---------------------EecCC-------------CCCCeEEEEeC
Confidence 9999875432 444420 0000 00110 11223344555
Q ss_pred cccccCCCCcceeEEEeeeccceecCCCCCCCceeeecCCCeEEeec-CCCeEEEEEccccceeeeeecccCceEEEEEe
Q 000725 1175 MSRDCQKNPVRFWRLALLVKNRVILGSPLDPRASAIGASSGLGIIGT-NDGLVYAWELSSGNKLGILHHFKGGTVSCIAT 1253 (1329)
Q Consensus 1175 ra~~~~gH~n~~wRLALl~K~siI~Gs~ldpra~afs~SG~~gfaGT-~DGlVYmWDLstG~kL~tL~~Heg~rVSCVA~ 1253 (1329)
|.-. . .+..+.-+. ..+ -....++++|++++.|+ .||.|++||+.+++.+..+.......+..+++
T Consensus 245 r~~~------~--p~~~~~~d~-~~~----~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~ 311 (493)
T PTZ00421 245 RKMA------S--PYSTVDLDQ-SSA----LFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCM 311 (493)
T ss_pred CCCC------C--ceeEeccCC-CCc----eEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEe
Confidence 4111 0 000000000 000 01246788899988877 59999999999998777765433323555566
Q ss_pred cCC
Q 000725 1254 DDS 1256 (1329)
Q Consensus 1254 dps 1256 (1329)
.|.
T Consensus 312 ~pk 314 (493)
T PTZ00421 312 MPK 314 (493)
T ss_pred ccc
Confidence 643
No 35
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.83 E-value=7.8e-20 Score=212.22 Aligned_cols=231 Identities=14% Similarity=0.189 Sum_probs=196.7
Q ss_pred cceeEEEEecCCeEEEecCCCeEEEEeccCcceEEE-eeeeecCCCCcccceeEEEecCCCCCeeEecCCCccEEEEEcc
Q 000725 1012 DCVQCILVCEPKHLIAVGESGKLHLWEMNSSWSAQV-EECIIPINDCIYPCIVEMKRIPKCAPLVVGHNGFGEFGIWDIS 1090 (1329)
Q Consensus 1012 ~sV~cIlVcDpnhLVSaSdDGkL~IWDM~SgWsm~t-ee~Vi~~n~~v~p~I~elKrFpkss~lIVTgSGDgtf~LWDIs 1090 (1329)
+.+.|--+. .++++++++|++|++||...+-.+.+ ++ +|...+..+ .|+..+.++++||.|.|+++||+.
T Consensus 209 ~~~~~~q~~-~~~~~~~s~~~tl~~~~~~~~~~i~~~l~-------GH~g~V~~l-~~~~~~~~lvsgS~D~t~rvWd~~ 279 (537)
T KOG0274|consen 209 HVVLCLQLH-DGFFKSGSDDSTLHLWDLNNGYLILTRLV-------GHFGGVWGL-AFPSGGDKLVSGSTDKTERVWDCS 279 (537)
T ss_pred chhhhheee-cCeEEecCCCceeEEeecccceEEEeecc-------CCCCCceeE-EEecCCCEEEEEecCCcEEeEecC
Confidence 666666666 89999999999999999999999999 77 999999999 999999999999999999999999
Q ss_pred ccceeeeeccCccceeE--ecccc--ccccccCcceEECcchhhh--ccccccccccCCCceeecCCCCccceEEEEeec
Q 000725 1091 KRVLVSRFSAARASIYQ--FFPIN--LFSWQRNGSVSMDASLELT--NTATTSLFSKHSEKSSFCPSVGEDSAIWLLVST 1164 (1329)
Q Consensus 1091 kg~llqsF~ahs~sV~s--fsP~~--s~S~d~~v~tfd~~s~d~~--leatv~~fSgdvn~VsF~P~sGeD~AiwLLVST 1164 (1329)
+|+|+.+|.+|.++|.. +-+.- ++|+|.+|++|++.++.+. +.+|+.+|.. +.+.- + -++.|+
T Consensus 280 sg~C~~~l~gh~stv~~~~~~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~----v~~~~----~---~lvsgs 348 (537)
T KOG0274|consen 280 TGECTHSLQGHTSSVRCLTIDPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNC----VQLDE----P---LLVSGS 348 (537)
T ss_pred CCcEEEEecCCCceEEEEEccCceEeeccCCceEEEEeccCcceEEEeccccccEEE----EEecC----C---EEEEEe
Confidence 99999999999999999 33333 5679999999999988887 3458887777 76652 3 467777
Q ss_pred cCccchhhccc----ccccCCCCcceeEEEeeeccceecCCCCCCCceeeecCC-CeEEeecCCCeEEEEEcccc-ceee
Q 000725 1165 ISDSDAQHNCM----SRDCQKNPVRFWRLALLVKNRVILGSPLDPRASAIGASS-GLGIIGTNDGLVYAWELSSG-NKLG 1238 (1329)
Q Consensus 1165 ~Sdd~t~~Dlr----a~~~~gH~n~~wRLALl~K~siI~Gs~ldpra~afs~SG-~~gfaGT~DGlVYmWDLstG-~kL~ 1238 (1329)
.+.....||.+ ++..+||+.+++.|.+ ++ .++++|+.|++|.+||+.++ +++.
T Consensus 349 ~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~---------------------~~~~~~~Sgs~D~~IkvWdl~~~~~c~~ 407 (537)
T KOG0274|consen 349 YDGTVKVWDPRTGKCLKSLSGHTGRVYSLIV---------------------DSENRLLSGSLDTTIKVWDLRTKRKCIH 407 (537)
T ss_pred cCceEEEEEhhhceeeeeecCCcceEEEEEe---------------------cCcceEEeeeeccceEeecCCchhhhhh
Confidence 78878889999 8889999999999652 33 89999999999999999999 9999
Q ss_pred eeecccCceEEEEEecCCCCceEEEecCCCCCCccccCCCCCCCCcEEEeeeCCCcceeecCCCC
Q 000725 1239 ILHHFKGGTVSCIATDDSGLQALAVAGDGPDGGRRQRDPRHGQNDHVRIWKMDPNLGCVRNSNGD 1303 (1329)
Q Consensus 1239 tL~~Heg~rVSCVA~dps~p~~~AsA~d~~d~~~r~~~~~~s~D~~VRiW~~~~~~~~~~~~~~~ 1303 (1329)
+|++|.. .|+++... ..=+.++ +.|++||+|+. ...+|++--.|-
T Consensus 408 tl~~h~~-~v~~l~~~---~~~Lvs~---------------~aD~~Ik~WD~-~~~~~~~~~~~~ 452 (537)
T KOG0274|consen 408 TLQGHTS-LVSSLLLR---DNFLVSS---------------SADGTIKLWDA-EEGECLRTLEGR 452 (537)
T ss_pred hhcCCcc-cccccccc---cceeEec---------------cccccEEEeec-ccCceeeeeccC
Confidence 9999999 89988887 3326666 78889999954 455787766664
No 36
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.81 E-value=3.7e-19 Score=210.30 Aligned_cols=257 Identities=11% Similarity=0.168 Sum_probs=220.5
Q ss_pred ceeeecCCCcEEEEecCccCccccCCCccccccccccccCCCCcEEEEEecCcceeeeEEEecc-cceeEEEEe-cCCeE
Q 000725 948 SCALFTPDGQYLVLLDSMKTPYCREGRSDCLCSTCTSHRLDENAVKIVKVKPGYVSVVAKLKTD-DCVQCILVC-EPKHL 1025 (1329)
Q Consensus 948 sglqFTPDGQ~LvLlgsik~p~CR~~~~dC~Cs~C~~s~seDNtVKIv~V~~G~vsll~kL~~h-~sV~cIlVc-DpnhL 1025 (1329)
-||.|.|--=.++ +.--.+.|.+||-.-|. ++.+|..| +.|+.|++- ..-.+
T Consensus 13 KglsFHP~rPwIL------------------------tslHsG~IQlWDYRM~t--li~rFdeHdGpVRgv~FH~~qplF 66 (1202)
T KOG0292|consen 13 KGLSFHPKRPWIL------------------------TSLHSGVIQLWDYRMGT--LIDRFDEHDGPVRGVDFHPTQPLF 66 (1202)
T ss_pred cceecCCCCCEEE------------------------EeecCceeeeehhhhhh--HHhhhhccCCccceeeecCCCCeE
Confidence 4889999888888 77778999999999999 99999999 999999999 88899
Q ss_pred EEecCCCeEEEEeccCcceEEEeeeeecCCCCcccceeEEEecCCCCCeeEecCCCccEEEEEccccceeeeeccCccce
Q 000725 1026 IAVGESGKLHLWEMNSSWSAQVEECIIPINDCIYPCIVEMKRIPKCAPLVVGHNGFGEFGIWDISKRVLVSRFSAARASI 1105 (1329)
Q Consensus 1026 VSaSdDGkL~IWDM~SgWsm~tee~Vi~~n~~v~p~I~elKrFpkss~lIVTgSGDgtf~LWDIskg~llqsF~ahs~sV 1105 (1329)
||+|||-+|+||...+.-+.-++- ||--+|-.+ -|..-=..||++|-|.||+||...+|+|+....||.--|
T Consensus 67 VSGGDDykIkVWnYk~rrclftL~-------GHlDYVRt~-~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYV 138 (1202)
T KOG0292|consen 67 VSGGDDYKIKVWNYKTRRCLFTLL-------GHLDYVRTV-FFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYV 138 (1202)
T ss_pred EecCCccEEEEEecccceehhhhc-------cccceeEEe-eccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEE
Confidence 999999999999998877776666 888888888 999999999999999999999999999999999999999
Q ss_pred eE--ecccc----ccccccCcceEECcchhhh----------c-ccc-------------cccccc---CCCceeecCCC
Q 000725 1106 YQ--FFPIN----LFSWQRNGSVSMDASLELT----------N-TAT-------------TSLFSK---HSEKSSFCPSV 1152 (1329)
Q Consensus 1106 ~s--fsP~~----s~S~d~~v~tfd~~s~d~~----------l-eat-------------v~~fSg---dvn~VsF~P~s 1152 (1329)
|+ |-|.+ +.|+|.+||+||.+...++ + +++ ++-++| .+|-++|+|
T Consensus 139 McAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhp-- 216 (1202)
T KOG0292|consen 139 MCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHP-- 216 (1202)
T ss_pred EeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecC--
Confidence 99 99977 9999999999999887766 1 111 122233 678899999
Q ss_pred CccceEEEEeeccCc-cchhhccc------ccccCCCCcceeEEEeeeccceecCCCCCCCceeeecCCCeEEeecCCCe
Q 000725 1153 GEDSAIWLLVSTISD-SDAQHNCM------SRDCQKNPVRFWRLALLVKNRVILGSPLDPRASAIGASSGLGIIGTNDGL 1225 (1329)
Q Consensus 1153 GeD~AiwLLVST~Sd-d~t~~Dlr------a~~~~gH~n~~wRLALl~K~siI~Gs~ldpra~afs~SG~~gfaGT~DGl 1225 (1329)
-.=|+||.++| ..++|-+- .++|-||-|.+=. +-|.+--.++++-++|++
T Consensus 217 ----TlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVss-------------------vlfhp~q~lIlSnsEDks 273 (1202)
T KOG0292|consen 217 ----TLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSS-------------------VLFHPHQDLILSNSEDKS 273 (1202)
T ss_pred ----CcceEEecCCcceeeEEEeccccceeehhhhcccCCcce-------------------EEecCccceeEecCCCcc
Confidence 34566766665 45668776 7889999998766 567777899999999999
Q ss_pred EEEEEccccceeeeeecccCceEEEEEecCCCCceEEEec
Q 000725 1226 VYAWELSSGNKLGILHHFKGGTVSCIATDDSGLQALAVAG 1265 (1329)
Q Consensus 1226 VYmWDLstG~kL~tL~~Heg~rVSCVA~dps~p~~~AsA~ 1265 (1329)
|.+||+.+-+-+.++..-++ |-++||.||..+- +|-|-
T Consensus 274 irVwDm~kRt~v~tfrrend-RFW~laahP~lNL-fAAgH 311 (1202)
T KOG0292|consen 274 IRVWDMTKRTSVQTFRREND-RFWILAAHPELNL-FAAGH 311 (1202)
T ss_pred EEEEecccccceeeeeccCC-eEEEEEecCCcce-eeeec
Confidence 99999999999999987777 9999999999886 56553
No 37
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.81 E-value=8.7e-19 Score=187.71 Aligned_cols=269 Identities=16% Similarity=0.213 Sum_probs=199.0
Q ss_pred cccccccccccccccccccc---cceeeecCCCcEEEEecCccCccccCCCccccccccccccCCCCcEEEEEecCccee
Q 000725 927 HTSVMLPFLKDNFGREIALE---RSCALFTPDGQYLVLLDSMKTPYCREGRSDCLCSTCTSHRLDENAVKIVKVKPGYVS 1003 (1329)
Q Consensus 927 ~t~~llp~~~~~~~~~~~~e---rsglqFTPDGQ~LvLlgsik~p~CR~~~~dC~Cs~C~~s~seDNtVKIv~V~~G~vs 1003 (1329)
||--++--+..+|.|-+.-. -.-|.+|||+.+|+ .++- --|||||++++.--
T Consensus 20 hTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LA------------------------aa~~-qhvRlyD~~S~np~ 74 (311)
T KOG0315|consen 20 HTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLA------------------------AAGN-QHVRLYDLNSNNPN 74 (311)
T ss_pred ceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhh------------------------hccC-CeeEEEEccCCCCC
Confidence 44445555666777766632 23466799999999 3332 35999999999988
Q ss_pred eeEEEecc-cceeEEEEe-cCCeEEEecCCCeEEEEeccCcceEEEeeeeecCCCCcccceeEEEecCCCCCeeEecCCC
Q 000725 1004 VVAKLKTD-DCVQCILVC-EPKHLIAVGESGKLHLWEMNSSWSAQVEECIIPINDCIYPCIVEMKRIPKCAPLVVGHNGF 1081 (1329)
Q Consensus 1004 ll~kL~~h-~sV~cIlVc-DpnhLVSaSdDGkL~IWDM~SgWsm~tee~Vi~~n~~v~p~I~elKrFpkss~lIVTgSGD 1081 (1329)
++.+|++| ..|-.|-|- |++.++++|+||+++||||.+ =+++.+| -|-..|.++..-|+ ..-+++|+-.
T Consensus 75 Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~-~~~qR~~-------~~~spVn~vvlhpn-QteLis~dqs 145 (311)
T KOG0315|consen 75 PVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRS-LSCQRNY-------QHNSPVNTVVLHPN-QTELISGDQS 145 (311)
T ss_pred ceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccC-cccchhc-------cCCCCcceEEecCC-cceEEeecCC
Confidence 99999999 999999997 999999999999999999999 4445555 34566777744444 5566788999
Q ss_pred ccEEEEEccccceeeee-ccCccceeE--ecccc----ccccccCcceEECcchhhh--cc--ccccccccCCCceeecC
Q 000725 1082 GEFGIWDISKRVLVSRF-SAARASIYQ--FFPIN----LFSWQRNGSVSMDASLELT--NT--ATTSLFSKHSEKSSFCP 1150 (1329)
Q Consensus 1082 gtf~LWDIskg~llqsF-~ahs~sV~s--fsP~~----s~S~d~~v~tfd~~s~d~~--le--atv~~fSgdvn~VsF~P 1150 (1329)
|.|++||+....|.... ....-+|.+ +-|++ ..-=-|.+-+|..-..... ++ ..-+..++++-++.|+|
T Consensus 146 g~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSP 225 (311)
T KOG0315|consen 146 GNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSP 225 (311)
T ss_pred CcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECC
Confidence 99999999988773332 223334444 66776 2223455566666553322 21 12233344667799999
Q ss_pred CCCccceEEEEeeccCccchhhccc-----ccccCCCCcceeEEEeeeccceecCCCCCCCceeeecCCCeEEeecCCCe
Q 000725 1151 SVGEDSAIWLLVSTISDSDAQHNCM-----SRDCQKNPVRFWRLALLVKNRVILGSPLDPRASAIGASSGLGIIGTNDGL 1225 (1329)
Q Consensus 1151 ~sGeD~AiwLLVST~Sdd~t~~Dlr-----a~~~~gH~n~~wRLALl~K~siI~Gs~ldpra~afs~SG~~gfaGT~DGl 1225 (1329)
| .+.|..++.+.+.+.|+.. ....+||..|.|- |+||..|+|+|.|+.|++
T Consensus 226 ----d-~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWd-------------------c~FS~dg~YlvTassd~~ 281 (311)
T KOG0315|consen 226 ----D-VKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWD-------------------CAFSADGEYLVTASSDHT 281 (311)
T ss_pred ----C-CcEEEeecCCceEEEEecCCceeeEEEeecCCceEEe-------------------eeeccCccEEEecCCCCc
Confidence 7 6777766666666677655 4566899999999 889999999999999999
Q ss_pred EEEEEccccceeeeeecccCceEEEEEec
Q 000725 1226 VYAWELSSGNKLGILHHFKGGTVSCIATD 1254 (1329)
Q Consensus 1226 VYmWDLstG~kL~tL~~Heg~rVSCVA~d 1254 (1329)
+++||++.|+++.-..+|... -.|++..
T Consensus 282 ~rlW~~~~~k~v~qy~gh~K~-~vc~~ln 309 (311)
T KOG0315|consen 282 ARLWDLSAGKEVRQYQGHHKA-AVCVALN 309 (311)
T ss_pred eeecccccCceeeecCCcccc-cEEEEee
Confidence 999999999999999999884 5588775
No 38
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.81 E-value=2.3e-19 Score=210.53 Aligned_cols=185 Identities=14% Similarity=0.103 Sum_probs=168.4
Q ss_pred ceeeecCCCcEEEEecCccCccccCCCccccccccccccCCCCcEEEEEecCcceeeeEEEecc-cceeEEEEe-cCCeE
Q 000725 948 SCALFTPDGQYLVLLDSMKTPYCREGRSDCLCSTCTSHRLDENAVKIVKVKPGYVSVVAKLKTD-DCVQCILVC-EPKHL 1025 (1329)
Q Consensus 948 sglqFTPDGQ~LvLlgsik~p~CR~~~~dC~Cs~C~~s~seDNtVKIv~V~~G~vsll~kL~~h-~sV~cIlVc-DpnhL 1025 (1329)
.|..|+||-+||+ +||+|.+||+|++.+= +.++.++|| +.|=+|-|+ =..|+
T Consensus 455 yg~sFsPd~rfLl------------------------ScSED~svRLWsl~t~--s~~V~y~GH~~PVwdV~F~P~GyYF 508 (707)
T KOG0263|consen 455 YGCSFSPDRRFLL------------------------SCSEDSSVRLWSLDTW--SCLVIYKGHLAPVWDVQFAPRGYYF 508 (707)
T ss_pred eeeeeccccccee------------------------eccCCcceeeeecccc--eeEEEecCCCcceeeEEecCCceEE
Confidence 5789999999999 9999999999999994 499999999 999999999 78899
Q ss_pred EEecCCCeEEEEeccCcceEEEeeeeecCCCCcccceeEEEecCCCCCeeEecCCCccEEEEEccccceeeeeccCccce
Q 000725 1026 IAVGESGKLHLWEMNSSWSAQVEECIIPINDCIYPCIVEMKRIPKCAPLVVGHNGFGEFGIWDISKRVLVSRFSAARASI 1105 (1329)
Q Consensus 1026 VSaSdDGkL~IWDM~SgWsm~tee~Vi~~n~~v~p~I~elKrFpkss~lIVTgSGDgtf~LWDIskg~llqsF~ahs~sV 1105 (1329)
+|+|.|++-++|.-...--.+.+- ||..-+=++ .|.+++++|+|||.|.|+|+|||.+|+.+..|.||.++|
T Consensus 509 atas~D~tArLWs~d~~~PlRifa-------ghlsDV~cv-~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V 580 (707)
T KOG0263|consen 509 ATASHDQTARLWSTDHNKPLRIFA-------GHLSDVDCV-SFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPV 580 (707)
T ss_pred EecCCCceeeeeecccCCchhhhc-------ccccccceE-EECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCce
Confidence 999999999999987766666666 788878888 999999999999999999999999999999999999999
Q ss_pred eE--ecccc----ccccccCcceEECcchhhh--ccccccccccCCCceeecCCCCccceEEEEeeccCccchhhccc
Q 000725 1106 YQ--FFPIN----LFSWQRNGSVSMDASLELT--NTATTSLFSKHSEKSSFCPSVGEDSAIWLLVSTISDSDAQHNCM 1175 (1329)
Q Consensus 1106 ~s--fsP~~----s~S~d~~v~tfd~~s~d~~--leatv~~fSgdvn~VsF~P~sGeD~AiwLLVST~Sdd~t~~Dlr 1175 (1329)
.+ |+|.| +++-|+.|++||++++... +-.| .+-+.+++|+. | +.-|-|+.++.+.++||+.
T Consensus 581 ~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~H----t~ti~SlsFS~----d-g~vLasgg~DnsV~lWD~~ 649 (707)
T KOG0263|consen 581 TALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGH----TGTIYSLSFSR----D-GNVLASGGADNSVRLWDLT 649 (707)
T ss_pred EEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcc----cCceeEEEEec----C-CCEEEecCCCCeEEEEEch
Confidence 99 99999 8999999999999999988 3233 44667799998 7 7888899999999999998
No 39
>PTZ00421 coronin; Provisional
Probab=99.81 E-value=2.9e-18 Score=197.11 Aligned_cols=221 Identities=10% Similarity=0.025 Sum_probs=151.1
Q ss_pred ccCCCCcEEEEEecCcce-----------eeeEEEecc-cceeEEEEe--cCCeEEEecCCCeEEEEeccCcce------
Q 000725 985 HRLDENAVKIVKVKPGYV-----------SVVAKLKTD-DCVQCILVC--EPKHLIAVGESGKLHLWEMNSSWS------ 1044 (1329)
Q Consensus 985 s~seDNtVKIv~V~~G~v-----------sll~kL~~h-~sV~cIlVc--DpnhLVSaSdDGkL~IWDM~SgWs------ 1044 (1329)
.++.+.....|+...|.. .....|.+| +.|.+|.|+ |+++|+|+|+||+|+|||++++-.
T Consensus 37 ~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~ 116 (493)
T PTZ00421 37 ACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISD 116 (493)
T ss_pred eECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCc
Confidence 666677777777655531 111358899 999999998 789999999999999999987532
Q ss_pred -EEEeeeeecCCCCcccceeEEEecCCCC-CeeEecCCCccEEEEEccccceeeeeccCccceeE--ecccc----cccc
Q 000725 1045 -AQVEECIIPINDCIYPCIVEMKRIPKCA-PLVVGHNGFGEFGIWDISKRVLVSRFSAARASIYQ--FFPIN----LFSW 1116 (1329)
Q Consensus 1045 -m~tee~Vi~~n~~v~p~I~elKrFpkss-~lIVTgSGDgtf~LWDIskg~llqsF~ahs~sV~s--fsP~~----s~S~ 1116 (1329)
+.++ .+|...|..+ +|.+.+ ++|++|+.|++++|||+++++.+..|.+|.+.|++ |+|++ +++.
T Consensus 117 ~l~~L-------~gH~~~V~~l-~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~ 188 (493)
T PTZ00421 117 PIVHL-------QGHTKKVGIV-SFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSK 188 (493)
T ss_pred ceEEe-------cCCCCcEEEE-EeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecC
Confidence 2222 3688889999 888875 79999999999999999999999999999999887 78877 6677
Q ss_pred ccCcceEECcchhhhccccccccccCCCceeecCCCCccceEEEEeeccCccchhhcccccccCCCCcceeEEEeeeccc
Q 000725 1117 QRNGSVSMDASLELTNTATTSLFSKHSEKSSFCPSVGEDSAIWLLVSTISDSDAQHNCMSRDCQKNPVRFWRLALLVKNR 1196 (1329)
Q Consensus 1117 d~~v~tfd~~s~d~~leatv~~fSgdvn~VsF~P~sGeD~AiwLLVST~Sdd~t~~Dlra~~~~gH~n~~wRLALl~K~s 1196 (1329)
|+.|++||.+++..... +.+|......
T Consensus 189 Dg~IrIwD~rsg~~v~t---------------------------------------------l~~H~~~~~~-------- 215 (493)
T PTZ00421 189 DKKLNIIDPRDGTIVSS---------------------------------------------VEAHASAKSQ-------- 215 (493)
T ss_pred CCEEEEEECCCCcEEEE---------------------------------------------EecCCCCcce--------
Confidence 77778877765432210 0111111100
Q ss_pred eecCCCCCCCceeeecCCCeEE----eecCCCeEEEEEccccc-eeeeeecccCceEEEEEecCCCCceEEEecCCCCCC
Q 000725 1197 VILGSPLDPRASAIGASSGLGI----IGTNDGLVYAWELSSGN-KLGILHHFKGGTVSCIATDDSGLQALAVAGDGPDGG 1271 (1329)
Q Consensus 1197 iI~Gs~ldpra~afs~SG~~gf----aGT~DGlVYmWDLstG~-kL~tL~~Heg~rVSCVA~dps~p~~~AsA~d~~d~~ 1271 (1329)
.+.+.+.+++++ .++.|+.|++||+.+.. .+.....|....+....+++.... +++| +++|++
T Consensus 216 ----------~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~-L~lg-gkgDg~ 283 (493)
T PTZ00421 216 ----------RCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNL-LYIG-SKGEGN 283 (493)
T ss_pred ----------EEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCE-EEEE-EeCCCe
Confidence 011222233333 23579999999998765 344444444435667778866664 6665 345666
Q ss_pred ccccCCC
Q 000725 1272 RRQRDPR 1278 (1329)
Q Consensus 1272 ~r~~~~~ 1278 (1329)
+|+|+.+
T Consensus 284 Iriwdl~ 290 (493)
T PTZ00421 284 IRCFELM 290 (493)
T ss_pred EEEEEee
Confidence 6666664
No 40
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.81 E-value=2e-19 Score=198.33 Aligned_cols=228 Identities=14% Similarity=0.166 Sum_probs=181.7
Q ss_pred ceeeecCCCcEEEEecCccCccccCCCccccccccccccCCCCcEEEEEecCcceeeeEEEecc-cceeEEEEecCCeEE
Q 000725 948 SCALFTPDGQYLVLLDSMKTPYCREGRSDCLCSTCTSHRLDENAVKIVKVKPGYVSVVAKLKTD-DCVQCILVCEPKHLI 1026 (1329)
Q Consensus 948 sglqFTPDGQ~LvLlgsik~p~CR~~~~dC~Cs~C~~s~seDNtVKIv~V~~G~vsll~kL~~h-~sV~cIlVcDpnhLV 1026 (1329)
|.|++-.|-+.|| +||.|.||+||||++|. ++.+|.+| +.|.-+.|. ++++|
T Consensus 239 SVLCLqyd~rvii------------------------sGSSDsTvrvWDv~tge--~l~tlihHceaVLhlrf~-ng~mv 291 (499)
T KOG0281|consen 239 SVLCLQYDERVIV------------------------SGSSDSTVRVWDVNTGE--PLNTLIHHCEAVLHLRFS-NGYMV 291 (499)
T ss_pred cEEeeeccceEEE------------------------ecCCCceEEEEeccCCc--hhhHHhhhcceeEEEEEe-CCEEE
Confidence 4566667888899 99999999999999998 99999999 999988876 56999
Q ss_pred EecCCCeEEEEeccCcceEEEeeeeecCCCCcccceeEEEecCCCCCeeEecCCCccEEEEEccccceeeeeccCcccee
Q 000725 1027 AVGESGKLHLWEMNSSWSAQVEECIIPINDCIYPCIVEMKRIPKCAPLVVGHNGFGEFGIWDISKRVLVSRFSAARASIY 1106 (1329)
Q Consensus 1027 SaSdDGkL~IWDM~SgWsm~tee~Vi~~n~~v~p~I~elKrFpkss~lIVTgSGDgtf~LWDIskg~llqsF~ahs~sV~ 1106 (1329)
++|.|+++.||||.+.--+.+-. ---||-..+.-| -|. +.+|||+|||-|+++||++++.++.+++||.--|-
T Consensus 292 tcSkDrsiaVWdm~sps~it~rr----VLvGHrAaVNvV-dfd--~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIA 364 (499)
T KOG0281|consen 292 TCSKDRSIAVWDMASPTDITLRR----VLVGHRAAVNVV-DFD--DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIA 364 (499)
T ss_pred EecCCceeEEEeccCchHHHHHH----HHhhhhhheeee-ccc--cceEEEecCCceEEEEeccceeeehhhhcccccce
Confidence 99999999999999865332222 011565666655 554 45999999999999999999999999999988777
Q ss_pred E--eccc--cccccccCcceEECcchhhhc--cccccccccCCCceeecCCCCccceEEEEeeccCccchhhcccccccC
Q 000725 1107 Q--FFPI--NLFSWQRNGSVSMDASLELTN--TATTSLFSKHSEKSSFCPSVGEDSAIWLLVSTISDSDAQHNCMSRDCQ 1180 (1329)
Q Consensus 1107 s--fsP~--~s~S~d~~v~tfd~~s~d~~l--eatv~~fSgdvn~VsF~P~sGeD~AiwLLVST~Sdd~t~~Dlra~~~~ 1180 (1329)
+ +..- .++|-|-+|++|+...|.+.| ++|---+.. +
T Consensus 365 ClQYr~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRc----i---------------------------------- 406 (499)
T KOG0281|consen 365 CLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRC----I---------------------------------- 406 (499)
T ss_pred ehhccCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhh----e----------------------------------
Confidence 7 3322 278889999999999999883 433222222 2
Q ss_pred CCCcceeEEEeeeccceecCCCCCCCceeeecCCCeEEeecCCCeEEEEEccccc---------eeeeeecccCceEEEE
Q 000725 1181 KNPVRFWRLALLVKNRVILGSPLDPRASAIGASSGLGIIGTNDGLVYAWELSSGN---------KLGILHHFKGGTVSCI 1251 (1329)
Q Consensus 1181 gH~n~~wRLALl~K~siI~Gs~ldpra~afs~SG~~gfaGT~DGlVYmWDLstG~---------kL~tL~~Heg~rVSCV 1251 (1329)
..+...+++|..||.|++|||.+|- +|.+|--|.| ||--+
T Consensus 407 ------------------------------RFd~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsg-RVFrL 455 (499)
T KOG0281|consen 407 ------------------------------RFDNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSG-RVFRL 455 (499)
T ss_pred ------------------------------eecCceeeeccccceEEEEecccccCCcccccchHHHhhhhccc-eeEEE
Confidence 2334567889999999999999986 5677889999 99999
Q ss_pred EecCCCCceEEEecCCCCCCccccCCCCCCCCcEEEeeeCCCcce
Q 000725 1252 ATDDSGLQALAVAGDGPDGGRRQRDPRHGQNDHVRIWKMDPNLGC 1296 (1329)
Q Consensus 1252 A~dps~p~~~AsA~d~~d~~~r~~~~~~s~D~~VRiW~~~~~~~~ 1296 (1329)
+++ ..-+.++ +-|++|-||+....+.|
T Consensus 456 QFD---~fqIvss---------------sHddtILiWdFl~~~~~ 482 (499)
T KOG0281|consen 456 QFD---EFQIISS---------------SHDDTILIWDFLNGPPS 482 (499)
T ss_pred eec---ceEEEec---------------cCCCeEEEEEcCCCCcc
Confidence 999 4435555 78999999999988888
No 41
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.81 E-value=1.5e-18 Score=196.26 Aligned_cols=250 Identities=15% Similarity=0.204 Sum_probs=198.9
Q ss_pred ccccccccccccccc--cccceeeecCCCcEEEEecCccCccccCCCccccccccccccCCCCcEEEEEecCcceeeeEE
Q 000725 930 VMLPFLKDNFGREIA--LERSCALFTPDGQYLVLLDSMKTPYCREGRSDCLCSTCTSHRLDENAVKIVKVKPGYVSVVAK 1007 (1329)
Q Consensus 930 ~llp~~~~~~~~~~~--~ersglqFTPDGQ~LvLlgsik~p~CR~~~~dC~Cs~C~~s~seDNtVKIv~V~~G~vsll~k 1007 (1329)
+.|--..+-++..+. -.-++|.|+.||.+|| .++.|+-+|||+...+ ++-+
T Consensus 219 ~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~La------------------------tG~~~G~~riw~~~G~---l~~t 271 (524)
T KOG0273|consen 219 LVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLA------------------------TGSEDGEARIWNKDGN---LIST 271 (524)
T ss_pred hhhhhhhhhhcccCCccCCcceEEecCCCCeEE------------------------EeecCcEEEEEecCch---hhhh
Confidence 333333344444443 6789999999999999 9999999999998654 5778
Q ss_pred Eecc-cceeEEEEe-cCCeEEEecCCCeEEEEeccCcceEEEee----------------eeecCCC-------------
Q 000725 1008 LKTD-DCVQCILVC-EPKHLIAVGESGKLHLWEMNSSWSAQVEE----------------CIIPIND------------- 1056 (1329)
Q Consensus 1008 L~~h-~sV~cIlVc-DpnhLVSaSdDGkL~IWDM~SgWsm~tee----------------~Vi~~n~------------- 1056 (1329)
|--| +.|-.+-|. +.+||.|+|-||+++|||.-+|.+++-++ |++++-+
T Consensus 272 l~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P 351 (524)
T KOG0273|consen 272 LGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRP 351 (524)
T ss_pred hhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCc
Confidence 8889 999999999 99999999999999999999999888877 3442222
Q ss_pred -----CcccceeEEEecCCCCCeeEecCCCccEEEEEccccceeeeeccCccceeE--eccccccccccCcceEECcchh
Q 000725 1057 -----CIYPCIVEMKRIPKCAPLVVGHNGFGEFGIWDISKRVLVSRFSAARASIYQ--FFPINLFSWQRNGSVSMDASLE 1129 (1329)
Q Consensus 1057 -----~v~p~I~elKrFpkss~lIVTgSGDgtf~LWDIskg~llqsF~ahs~sV~s--fsP~~s~S~d~~v~tfd~~s~d 1129 (1329)
+|-..|..+ ++++.+.|++|+|.|||.+||-+...++...|.+|+..|++ .+|++...+
T Consensus 352 ~~t~~GH~g~V~al-k~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~------------- 417 (524)
T KOG0273|consen 352 VKTFIGHHGEVNAL-KWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTS------------- 417 (524)
T ss_pred ceeeecccCceEEE-EECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccC-------------
Confidence 355666777 99999999999999999999999999999999999999999 888874111
Q ss_pred hhccccccccccCCCceeecCCCCccceEEEEeeccCccchhhccc----ccccCCCCcceeEEEeeeccceecCCCCCC
Q 000725 1130 LTNTATTSLFSKHSEKSSFCPSVGEDSAIWLLVSTISDSDAQHNCM----SRDCQKNPVRFWRLALLVKNRVILGSPLDP 1205 (1329)
Q Consensus 1130 ~~leatv~~fSgdvn~VsF~P~sGeD~AiwLLVST~Sdd~t~~Dlr----a~~~~gH~n~~wRLALl~K~siI~Gs~ldp 1205 (1329)
.| -+ ..-|+..+-+.+.++||.. ...|..|...+|.
T Consensus 418 -------------------n~---~~-~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVys----------------- 457 (524)
T KOG0273|consen 418 -------------------NP---NM-NLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYS----------------- 457 (524)
T ss_pred -------------------CC---cC-CceEEEeecCCeEEEEEccCCceeEeeccCCCceEE-----------------
Confidence 11 01 2233444455566667777 4557778888887
Q ss_pred CceeeecCCCeEEeecCCCeEEEEEccccceeeeeecccCceEEEEEecCCCCceEEEe
Q 000725 1206 RASAIGASSGLGIIGTNDGLVYAWELSSGNKLGILHHFKGGTVSCIATDDSGLQALAVA 1264 (1329)
Q Consensus 1206 ra~afs~SG~~gfaGT~DGlVYmWDLstG~kL~tL~~Heg~rVSCVA~dps~p~~~AsA 1264 (1329)
++|+++|+|+++|+.||.|++|++.+|+.+..+.+-.+ |.-|.-+-.++...|.+
T Consensus 458 --vafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~~--Ifel~Wn~~G~kl~~~~ 512 (524)
T KOG0273|consen 458 --VAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGTGG--IFELCWNAAGDKLGACA 512 (524)
T ss_pred --EEecCCCcEEEecCCCCeeEeccccchheeEeecCCCe--EEEEEEcCCCCEEEEEe
Confidence 66999999999999999999999999999999988666 88888887776633333
No 42
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.81 E-value=2.3e-17 Score=164.59 Aligned_cols=250 Identities=11% Similarity=0.067 Sum_probs=167.6
Q ss_pred ccCCCCcEEEEEecCcceeeeEEEecccceeEEEEe-cCCeE-EEecCCCeEEEEeccCcceEEEeeeeecCCCCcccce
Q 000725 985 HRLDENAVKIVKVKPGYVSVVAKLKTDDCVQCILVC-EPKHL-IAVGESGKLHLWEMNSSWSAQVEECIIPINDCIYPCI 1062 (1329)
Q Consensus 985 s~seDNtVKIv~V~~G~vsll~kL~~h~sV~cIlVc-DpnhL-VSaSdDGkL~IWDM~SgWsm~tee~Vi~~n~~v~p~I 1062 (1329)
+.+.|++|++|++.+|. ++.++.++..+.++.+. |.+++ ++++.|++|.+||+.++-...... . ... .
T Consensus 6 s~~~d~~v~~~d~~t~~--~~~~~~~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~----~--~~~--~ 75 (300)
T TIGR03866 6 SNEKDNTISVIDTATLE--VTRTFPVGQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLP----S--GPD--P 75 (300)
T ss_pred EecCCCEEEEEECCCCc--eEEEEECCCCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEecc----C--CCC--c
Confidence 56789999999999987 88999988888999998 77777 677889999999999875443322 1 111 2
Q ss_pred eEEEecCCCCCee-EecCCCccEEEEEccccceeeeeccCcc-ceeEecccc----cccccc-CcceEECcchhhhcccc
Q 000725 1063 VEMKRIPKCAPLV-VGHNGFGEFGIWDISKRVLVSRFSAARA-SIYQFFPIN----LFSWQR-NGSVSMDASLELTNTAT 1135 (1329)
Q Consensus 1063 ~elKrFpkss~lI-VTgSGDgtf~LWDIskg~llqsF~ahs~-sV~sfsP~~----s~S~d~-~v~tfd~~s~d~~leat 1135 (1329)
..+ .|.++++.+ ++++.|+++.+||+++++.+..|..+.. .-..|+|++ ..+.++ .+..|+..+.+....
T Consensus 76 ~~~-~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~-- 152 (300)
T TIGR03866 76 ELF-ALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDN-- 152 (300)
T ss_pred cEE-EECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEE--
Confidence 334 566777755 6777899999999999999988874322 223488988 222332 345556655443311
Q ss_pred ccccccCCCceeecCCCCccceEEEEeec-cCccchhhcccccccCCCCcceeEEEeeeccceecCCCCCCCceeeecCC
Q 000725 1136 TSLFSKHSEKSSFCPSVGEDSAIWLLVST-ISDSDAQHNCMSRDCQKNPVRFWRLALLVKNRVILGSPLDPRASAIGASS 1214 (1329)
Q Consensus 1136 v~~fSgdvn~VsF~P~sGeD~AiwLLVST-~Sdd~t~~Dlra~~~~gH~n~~wRLALl~K~siI~Gs~ldpra~afs~SG 1214 (1329)
..+......+.|.| | +.+|++++ .+...+.||++... ..+.+... ... +....+-|...+++++|
T Consensus 153 -~~~~~~~~~~~~s~----d-g~~l~~~~~~~~~v~i~d~~~~~----~~~~~~~~---~~~-~~~~~~~~~~i~~s~dg 218 (300)
T TIGR03866 153 -VLVDQRPRFAEFTA----D-GKELWVSSEIGGTVSVIDVATRK----VIKKITFE---IPG-VHPEAVQPVGIKLTKDG 218 (300)
T ss_pred -EEcCCCccEEEECC----C-CCEEEEEcCCCCEEEEEEcCcce----eeeeeeec---ccc-cccccCCccceEECCCC
Confidence 11112334488998 6 77887765 36677789998543 11112111 000 11122345668899999
Q ss_pred CeEEe-ecCCCeEEEEEccccceeeeeecccCceEEEEEecCCCCceEEEe
Q 000725 1215 GLGII-GTNDGLVYAWELSSGNKLGILHHFKGGTVSCIATDDSGLQALAVA 1264 (1329)
Q Consensus 1215 ~~gfa-GT~DGlVYmWDLstG~kL~tL~~Heg~rVSCVA~dps~p~~~AsA 1264 (1329)
++++. ...++.|++||+.+++.+..+..+ + .+.+++++|++.. ++++
T Consensus 219 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~-~~~~~~~~~~g~~-l~~~ 266 (300)
T TIGR03866 219 KTAFVALGPANRVAVVDAKTYEVLDYLLVG-Q-RVWQLAFTPDEKY-LLTT 266 (300)
T ss_pred CEEEEEcCCCCeEEEEECCCCcEEEEEEeC-C-CcceEEECCCCCE-EEEE
Confidence 98655 455678999999999988877543 3 5999999998887 5554
No 43
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.79 E-value=1.3e-18 Score=189.27 Aligned_cols=259 Identities=14% Similarity=0.123 Sum_probs=214.0
Q ss_pred EeccccccceEEEEEEeeeCCCCCCCCceeecccccccccccccccccccccceeeecCCCcEEEEecCccCccccCCCc
Q 000725 896 SCGFLVDKKRTLFIYTVDIQEPRVGNPSCVGHTSVMLPFLKDNFGREIALERSCALFTPDGQYLVLLDSMKTPYCREGRS 975 (1329)
Q Consensus 896 lCG~L~~~~r~Lf~Yki~i~~~~~~~p~~vg~t~~llp~~~~~~~~~~~~ersglqFTPDGQ~LvLlgsik~p~CR~~~~ 975 (1329)
.|..-..-+|.+|+++|.=++.....+. ||.... -+|+|++||..|+
T Consensus 60 s~~aSgG~Dr~I~LWnv~gdceN~~~lk--gHsgAV----------------M~l~~~~d~s~i~--------------- 106 (338)
T KOG0265|consen 60 SCFASGGSDRAIVLWNVYGDCENFWVLK--GHSGAV----------------MELHGMRDGSHIL--------------- 106 (338)
T ss_pred CeEeecCCcceEEEEeccccccceeeec--ccccee----------------EeeeeccCCCEEE---------------
Confidence 4677788999999999999998888887 887654 4799999999999
Q ss_pred cccccccccccCCCCcEEEEEecCcceeeeEEEecc-cceeEEEEe--cCCeEEEecCCCeEEEEeccCcceEEEeeeee
Q 000725 976 DCLCSTCTSHRLDENAVKIVKVKPGYVSVVAKLKTD-DCVQCILVC--EPKHLIAVGESGKLHLWEMNSSWSAQVEECII 1052 (1329)
Q Consensus 976 dC~Cs~C~~s~seDNtVKIv~V~~G~vsll~kL~~h-~sV~cIlVc--DpnhLVSaSdDGkL~IWDM~SgWsm~tee~Vi 1052 (1329)
+||.|++|+.||+++|. .+.++++| .-|+.+..+ .+.-|.|+|+||+++||||.+.-.+++.+
T Consensus 107 ---------S~gtDk~v~~wD~~tG~--~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~--- 172 (338)
T KOG0265|consen 107 ---------SCGTDKTVRGWDAETGK--RIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE--- 172 (338)
T ss_pred ---------EecCCceEEEEecccce--eeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc---
Confidence 99999999999999999 99999999 888888888 77889999999999999999998888886
Q ss_pred cCCCCcccceeEEEecCCCCCeeEecCCCccEEEEEccccceeeeeccCccceeE--ecccc----ccccccCcceEECc
Q 000725 1053 PINDCIYPCIVEMKRIPKCAPLVVGHNGFGEFGIWDISKRVLVSRFSAARASIYQ--FFPIN----LFSWQRNGSVSMDA 1126 (1329)
Q Consensus 1053 ~~n~~v~p~I~elKrFpkss~lIVTgSGDgtf~LWDIskg~llqsF~ahs~sV~s--fsP~~----s~S~d~~v~tfd~~ 1126 (1329)
+-|+ +..+ .|...+.+|++|+-|+.+.+||+.+...+-+..||.++|+. ++|.+ +-+.|-++++|+.+
T Consensus 173 ----~kyq-ltAv-~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~r 246 (338)
T KOG0265|consen 173 ----NKYQ-LTAV-GFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVR 246 (338)
T ss_pred ----ccee-EEEE-EecccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEec
Confidence 3332 3445 99999999999999999999999999999999999999999 78888 55678999999976
Q ss_pred c---hhhh---ccccccccccCCCceeecCCCCccceEEEEeeccCccchhhcccc----cccCCCCcceeEEEeeeccc
Q 000725 1127 S---LELT---NTATTSLFSKHSEKSSFCPSVGEDSAIWLLVSTISDSDAQHNCMS----RDCQKNPVRFWRLALLVKNR 1196 (1329)
Q Consensus 1127 s---~d~~---leatv~~fSgdvn~VsF~P~sGeD~AiwLLVST~Sdd~t~~Dlra----~~~~gH~n~~wRLALl~K~s 1196 (1329)
- ..+. .+.+.+.|+..-=.++.+| + ...+-.++.|-.++.||--. .-..||-..+=
T Consensus 247 p~~p~~R~v~if~g~~hnfeknlL~cswsp----~-~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn--------- 312 (338)
T KOG0265|consen 247 PFAPSQRCVKIFQGHIHNFEKNLLKCSWSP----N-GTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVN--------- 312 (338)
T ss_pred ccCCCCceEEEeecchhhhhhhcceeeccC----C-CCccccccccceEEEeecccccEEEEcCCcceeEE---------
Confidence 3 3332 2677777877666788998 4 44455667777777788663 33345544433
Q ss_pred eecCCCCCCCceeeecCCCeEEeecCCCeEEEEEc
Q 000725 1197 VILGSPLDPRASAIGASSGLGIIGTNDGLVYAWEL 1231 (1329)
Q Consensus 1197 iI~Gs~ldpra~afs~SG~~gfaGT~DGlVYmWDL 1231 (1329)
.++|.|--.++.+++.|++|||=|+
T Consensus 313 ----------~~~Fhp~e~iils~~sdk~i~lgei 337 (338)
T KOG0265|consen 313 ----------EVDFHPTEPIILSCSSDKTIYLGEI 337 (338)
T ss_pred ----------EeeecCCCcEEEEeccCceeEeecc
Confidence 3788888888889999999998665
No 44
>PTZ00420 coronin; Provisional
Probab=99.79 E-value=5.2e-18 Score=198.28 Aligned_cols=249 Identities=10% Similarity=0.025 Sum_probs=168.7
Q ss_pred ccCCCCcEEEEEecCcceeeeEEEecc-cceeEEEEe-c-CCeEEEecCCCeEEEEeccCcceE-EE-eeeeecCCCCcc
Q 000725 985 HRLDENAVKIVKVKPGYVSVVAKLKTD-DCVQCILVC-E-PKHLIAVGESGKLHLWEMNSSWSA-QV-EECIIPINDCIY 1059 (1329)
Q Consensus 985 s~seDNtVKIv~V~~G~vsll~kL~~h-~sV~cIlVc-D-pnhLVSaSdDGkL~IWDM~SgWsm-~t-ee~Vi~~n~~v~ 1059 (1329)
.++.++.|++|++... ..+.+|.+| +.|.||.|+ + ++.|+|+|+||+|+|||++++... .. ...+ ....+|.
T Consensus 49 gGG~~gvI~L~~~~r~--~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~-~~L~gH~ 125 (568)
T PTZ00420 49 GGGLIGAIRLENQMRK--PPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQ-CILKGHK 125 (568)
T ss_pred CCCceeEEEeeecCCC--ceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccce-EEeecCC
Confidence 5788999999998775 489999999 899999999 4 899999999999999999875421 10 0000 0113678
Q ss_pred cceeEEEecCCCCCe-eEecCCCccEEEEEccccceeeeeccCccceeE--ecccc----ccccccCcceEECcchhhh-
Q 000725 1060 PCIVEMKRIPKCAPL-VVGHNGFGEFGIWDISKRVLVSRFSAARASIYQ--FFPIN----LFSWQRNGSVSMDASLELT- 1131 (1329)
Q Consensus 1060 p~I~elKrFpkss~l-IVTgSGDgtf~LWDIskg~llqsF~ahs~sV~s--fsP~~----s~S~d~~v~tfd~~s~d~~- 1131 (1329)
..|..+ .|.+++.. +++++.|++++|||+++++.+.++. |...|++ |+|++ +.+.|+.+++||..+++..
T Consensus 126 ~~V~sV-af~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~ 203 (568)
T PTZ00420 126 KKISII-DWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIAS 203 (568)
T ss_pred CcEEEE-EECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEE
Confidence 889999 99998875 4799999999999999999988886 5567877 89998 4567999999999987665
Q ss_pred -cccccccccc-CCCceeecCCCCccceEEEEeeccCc----cchhhccc-ccccCCCCcceeEEEeeeccceecCCCCC
Q 000725 1132 -NTATTSLFSK-HSEKSSFCPSVGEDSAIWLLVSTISD----SDAQHNCM-SRDCQKNPVRFWRLALLVKNRVILGSPLD 1204 (1329)
Q Consensus 1132 -leatv~~fSg-dvn~VsF~P~sGeD~AiwLLVST~Sd----d~t~~Dlr-a~~~~gH~n~~wRLALl~K~siI~Gs~ld 1204 (1329)
+.+|...... .+....|.| | ...|++++.++ ..++||++ +.. +...+.+. .....++.
T Consensus 204 tl~gH~g~~~s~~v~~~~fs~----d-~~~IlTtG~d~~~~R~VkLWDlr~~~~----pl~~~~ld--~~~~~L~p---- 268 (568)
T PTZ00420 204 SFHIHDGGKNTKNIWIDGLGG----D-DNYILSTGFSKNNMREMKLWDLKNTTS----ALVTMSID--NASAPLIP---- 268 (568)
T ss_pred EEecccCCceeEEEEeeeEcC----C-CCEEEEEEcCCCCccEEEEEECCCCCC----ceEEEEec--CCccceEE----
Confidence 2222221111 000012334 4 34555544443 47789999 343 22111111 00011111
Q ss_pred CCceeeecCCCeEEeecCCCeEEEEEccccceeeeeecc-cCceEEEEEecCCC
Q 000725 1205 PRASAIGASSGLGIIGTNDGLVYAWELSSGNKLGILHHF-KGGTVSCIATDDSG 1257 (1329)
Q Consensus 1205 pra~afs~SG~~gfaGT~DGlVYmWDLstG~kL~tL~~H-eg~rVSCVA~dps~ 1257 (1329)
.....+|.++++|+.|+.||+||+.++. +..|..+ ...-+.++++.|.+
T Consensus 269 ---~~D~~tg~l~lsGkGD~tIr~~e~~~~~-~~~l~~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 269 ---HYDESTGLIYLIGKGDGNCRYYQHSLGS-IRKVNEYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred ---eeeCCCCCEEEEEECCCeEEEEEccCCc-EEeecccccCCCccceEEcccc
Confidence 1124468999999999999999999884 4555332 22256777888655
No 45
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.78 E-value=2.4e-18 Score=190.56 Aligned_cols=263 Identities=12% Similarity=0.171 Sum_probs=208.0
Q ss_pred eeeEEEecc-cceeEEEEe-cCCeEEEecCCCeEEEEeccCcceEEEeeeeecCCCCcccceeEEEecCCCCCeeEecCC
Q 000725 1003 SVVAKLKTD-DCVQCILVC-EPKHLIAVGESGKLHLWEMNSSWSAQVEECIIPINDCIYPCIVEMKRIPKCAPLVVGHNG 1080 (1329)
Q Consensus 1003 sll~kL~~h-~sV~cIlVc-DpnhLVSaSdDGkL~IWDM~SgWsm~tee~Vi~~n~~v~p~I~elKrFpkss~lIVTgSG 1080 (1329)
-+.++|.+| ..|--|++= +=..+|+|++|++|++||..+|-..+.+. ||...++.+ +|..++-+++++|.
T Consensus 99 ~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~Lr-------GHt~sv~di-~~~a~Gk~l~tcSs 170 (406)
T KOG0295|consen 99 NLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLR-------GHTDSVFDI-SFDASGKYLATCSS 170 (406)
T ss_pred CchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhh-------ccccceeEE-EEecCccEEEecCC
Confidence 378889999 888888887 66678889999999999999999988888 999999999 99999999999999
Q ss_pred CccEEEEEccc-cceeeeeccCccceeE--ecccc----ccccccCcceEECcchhhh--ccccccccccCCCceeecCC
Q 000725 1081 FGEFGIWDISK-RVLVSRFSAARASIYQ--FFPIN----LFSWQRNGSVSMDASLELT--NTATTSLFSKHSEKSSFCPS 1151 (1329)
Q Consensus 1081 Dgtf~LWDIsk-g~llqsF~ahs~sV~s--fsP~~----s~S~d~~v~tfd~~s~d~~--leatv~~fSgdvn~VsF~P~ 1151 (1329)
|-.+.|||..+ -+|+++..+|.-.|-+ |.|.+ +|+.|.+|+.|+..++.+. +.++..||.- |+-.-
T Consensus 171 Dl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~----v~v~~- 245 (406)
T KOG0295|consen 171 DLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRM----VRVNQ- 245 (406)
T ss_pred ccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEE----EEecC-
Confidence 99999999998 7789999999998888 99998 9999999999999999998 5677888888 66665
Q ss_pred CCccceEEEEeeccCccchhhcccccc----cCC--CCcceeEEEeeeccceecCCCCCCCceeeecCCCeEEeecCCCe
Q 000725 1152 VGEDSAIWLLVSTISDSDAQHNCMSRD----CQK--NPVRFWRLALLVKNRVILGSPLDPRASAIGASSGLGIIGTNDGL 1225 (1329)
Q Consensus 1152 sGeD~AiwLLVST~Sdd~t~~Dlra~~----~~g--H~n~~wRLALl~K~siI~Gs~ldpra~afs~SG~~gfaGT~DGl 1225 (1329)
| |.-|-..+.+.+.+.|=..+.+ +.+ |+...=..|.+.--.=|++. +.-...|.++++|+-|++
T Consensus 246 ---D-Gti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~a------t~~~~~~~~l~s~SrDkt 315 (406)
T KOG0295|consen 246 ---D-GTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEA------TGSTNGGQVLGSGSRDKT 315 (406)
T ss_pred ---C-eeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhc------cCCCCCccEEEeecccce
Confidence 6 5444433444444447666442 223 44444444433322223332 222236789999999999
Q ss_pred EEEEEccccceeeeeecccCceEEEEEecCCCCceEEEecCCCCCCccccCCCCCCCCcEEEeeeCCCcceeecCCCCcc
Q 000725 1226 VYAWELSSGNKLGILHHFKGGTVSCIATDDSGLQALAVAGDGPDGGRRQRDPRHGQNDHVRIWKMDPNLGCVRNSNGDSK 1305 (1329)
Q Consensus 1226 VYmWDLstG~kL~tL~~Heg~rVSCVA~dps~p~~~AsA~d~~d~~~r~~~~~~s~D~~VRiW~~~~~~~~~~~~~~~~~ 1305 (1329)
|+|||+++|.+|=+|-+|.+ .|..||++|.+-- +++| +-|+++|||+.. |+-|..+-+--.-
T Consensus 316 Ik~wdv~tg~cL~tL~ghdn-wVr~~af~p~Gky-i~Sc---------------aDDktlrvwdl~-~~~cmk~~~ah~h 377 (406)
T KOG0295|consen 316 IKIWDVSTGMCLFTLVGHDN-WVRGVAFSPGGKY-ILSC---------------ADDKTLRVWDLK-NLQCMKTLEAHEH 377 (406)
T ss_pred EEEEeccCCeEEEEEecccc-eeeeeEEcCCCeE-EEEE---------------ecCCcEEEEEec-cceeeeccCCCcc
Confidence 99999999999999999999 8999999987766 8888 668888888875 6778777664444
Q ss_pred c
Q 000725 1306 F 1306 (1329)
Q Consensus 1306 ~ 1306 (1329)
|
T Consensus 378 f 378 (406)
T KOG0295|consen 378 F 378 (406)
T ss_pred e
Confidence 4
No 46
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.76 E-value=2.8e-17 Score=192.47 Aligned_cols=323 Identities=15% Similarity=0.137 Sum_probs=238.9
Q ss_pred ccccceeeeeeccCCeEEEEEEeccccccceEEEEEEeeeCCCCCCCCceeecccccccccccccccccccccceeeecC
Q 000725 875 FPLPILSVLLSTTGDKIYVCVSCGFLVDKKRTLFIYTVDIQEPRVGNPSCVGHTSVMLPFLKDNFGREIALERSCALFTP 954 (1329)
Q Consensus 875 HpmpVlsv~l~t~~~ei~IcVlCG~L~~~~r~Lf~Yki~i~~~~~~~p~~vg~t~~llp~~~~~~~~~~~~ersglqFTP 954 (1329)
||=+|.|++..--.+.-.+. -..-+-++++|++--+.+ ---...+|+| .+.||.|.+
T Consensus 146 ~gGvVssl~F~~~~~~~lL~-----sg~~D~~v~vwnl~~~~t--cl~~~~~H~S----------------~vtsL~~~~ 202 (775)
T KOG0319|consen 146 HGGVVSSLLFHPHWNRWLLA-----SGATDGTVRVWNLNDKRT--CLHTMILHKS----------------AVTSLAFSE 202 (775)
T ss_pred CCceEEEEEeCCccchhhee-----ecCCCceEEEEEcccCch--HHHHHHhhhh----------------heeeeeecc
Confidence 77888888776554441111 145677899998765544 1112233333 578999999
Q ss_pred CCcEEEEecCccCccccCCCccccccccccccCCCCcEEEEEecCcceeeeEEEecccceeEEEEe-c-----CCeEEEe
Q 000725 955 DGQYLVLLDSMKTPYCREGRSDCLCSTCTSHRLDENAVKIVKVKPGYVSVVAKLKTDDCVQCILVC-E-----PKHLIAV 1028 (1329)
Q Consensus 955 DGQ~LvLlgsik~p~CR~~~~dC~Cs~C~~s~seDNtVKIv~V~~G~vsll~kL~~h~sV~cIlVc-D-----pnhLVSa 1028 (1329)
||.-++ +.|-|+.+.|||...- ..+.+|.-+.+|-.+..- + +.++.++
T Consensus 203 d~~~~l------------------------s~~RDkvi~vwd~~~~--~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~Ta 256 (775)
T KOG0319|consen 203 DSLELL------------------------SVGRDKVIIVWDLVQY--KKLKTLPLYESLESVVRLREELGGKGEYIITA 256 (775)
T ss_pred CCceEE------------------------EeccCcEEEEeehhhh--hhhheechhhheeeEEEechhcCCcceEEEEe
Confidence 999999 8889999999999663 478888888999988887 5 4799999
Q ss_pred cCCCeEEEEeccCcceEE-------------------------Eee----------------------------------
Q 000725 1029 GESGKLHLWEMNSSWSAQ-------------------------VEE---------------------------------- 1049 (1329)
Q Consensus 1029 SdDGkL~IWDM~SgWsm~-------------------------tee---------------------------------- 1049 (1329)
|++|.+++||-.++-+.. +++
T Consensus 257 G~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~ 336 (775)
T KOG0319|consen 257 GGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEE 336 (775)
T ss_pred cCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCcc
Confidence 999999999954433211 111
Q ss_pred ---eee-----------cCCC-----CcccceeEEEecCCCCCeeEecCCCccEEEE----EccccceeeeeccCcccee
Q 000725 1050 ---CII-----------PIND-----CIYPCIVEMKRIPKCAPLVVGHNGFGEFGIW----DISKRVLVSRFSAARASIY 1106 (1329)
Q Consensus 1050 ---~Vi-----------~~n~-----~v~p~I~elKrFpkss~lIVTgSGDgtf~LW----DIskg~llqsF~ahs~sV~ 1106 (1329)
+|| +.-. ||.-.+|.| -.-.++-+|+|||-|.+++|| +.++-.+++-..+|+++|.
T Consensus 337 ~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL-~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svg 415 (775)
T KOG0319|consen 337 SHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSL-DVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVG 415 (775)
T ss_pred ceEEEEeCCCceEEEecCCCceEEEeCchhheeee-eecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccc
Confidence 111 1111 133334444 334556799999999999999 5566677999999999999
Q ss_pred E--ecccc-----ccccccCcceEECcchhhh-----c--cccccccccCCCceeecCCCCccceEEEEeeccCccchh-
Q 000725 1107 Q--FFPIN-----LFSWQRNGSVSMDASLELT-----N--TATTSLFSKHSEKSSFCPSVGEDSAIWLLVSTISDSDAQ- 1171 (1329)
Q Consensus 1107 s--fsP~~-----s~S~d~~v~tfd~~s~d~~-----l--eatv~~fSgdvn~VsF~P~sGeD~AiwLLVST~Sdd~t~- 1171 (1329)
. ++--+ +.|-|.++++|++..-+.+ + .-+......|+|.|.+.| +| + |+.|+|-|.++
T Consensus 416 ava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~---nd-k---LiAT~SqDktaK 488 (775)
T KOG0319|consen 416 AVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAP---ND-K---LIATGSQDKTAK 488 (775)
T ss_pred eeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecC---CC-c---eEEeccccccee
Confidence 8 43332 7899999999999984444 1 234444556999999999 56 3 44466655554
Q ss_pred -hccc----ccccCCCCcceeEEEeeeccceecCCCCCCCceeeecCCCeEEeecCCCeEEEEEccccceeeeeecccCc
Q 000725 1172 -HNCM----SRDCQKNPVRFWRLALLVKNRVILGSPLDPRASAIGASSGLGIIGTNDGLVYAWELSSGNKLGILHHFKGG 1246 (1329)
Q Consensus 1172 -~Dlr----a~~~~gH~n~~wRLALl~K~siI~Gs~ldpra~afs~SG~~gfaGT~DGlVYmWDLstG~kL~tL~~Heg~ 1246 (1329)
||+. +-.++||.-+.|+ +-|++....+++.|-|++|++|-+++..++.||.||+.
T Consensus 489 iW~le~~~l~~vLsGH~RGvw~-------------------V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~- 548 (775)
T KOG0319|consen 489 IWDLEQLRLLGVLSGHTRGVWC-------------------VSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTS- 548 (775)
T ss_pred eecccCceEEEEeeCCccceEE-------------------EEeccccceeEeccCCceEEEEEeccceeeeeecCccc-
Confidence 9987 7789999999999 77999999999999999999999999999999999999
Q ss_pred eEEEEEecCCCCceEEEecCCCCCCccccCC
Q 000725 1247 TVSCIATDDSGLQALAVAGDGPDGGRRQRDP 1277 (1329)
Q Consensus 1247 rVSCVA~dps~p~~~AsA~d~~d~~~r~~~~ 1277 (1329)
.|.-+++-..+.. +.+|+ -||-+++|.+
T Consensus 549 aVlra~F~~~~~q-liS~~--adGliKlWni 576 (775)
T KOG0319|consen 549 AVLRASFIRNGKQ-LISAG--ADGLIKLWNI 576 (775)
T ss_pred eeEeeeeeeCCcE-EEecc--CCCcEEEEec
Confidence 8888888867776 78883 4666666654
No 47
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.76 E-value=7.2e-17 Score=173.18 Aligned_cols=257 Identities=14% Similarity=0.116 Sum_probs=195.6
Q ss_pred ccCCCCcEEEEEecCcceeeeEEEecc-cceeEEEEe-cCCeEEEecCCCeEEEEeccCcceE--EEeeeeecCCCCccc
Q 000725 985 HRLDENAVKIVKVKPGYVSVVAKLKTD-DCVQCILVC-EPKHLIAVGESGKLHLWEMNSSWSA--QVEECIIPINDCIYP 1060 (1329)
Q Consensus 985 s~seDNtVKIv~V~~G~vsll~kL~~h-~sV~cIlVc-DpnhLVSaSdDGkL~IWDM~SgWsm--~tee~Vi~~n~~v~p 1060 (1329)
+.|-|-|||.|+..+|. ..-++.-- .-|..+-++ |++.|++++ --.|+++|++|+=-+ ++++ +|..
T Consensus 15 sA~YDhTIRfWqa~tG~--C~rTiqh~dsqVNrLeiTpdk~~LAaa~-~qhvRlyD~~S~np~Pv~t~e-------~h~k 84 (311)
T KOG0315|consen 15 SAGYDHTIRFWQALTGI--CSRTIQHPDSQVNRLEITPDKKDLAAAG-NQHVRLYDLNSNNPNPVATFE-------GHTK 84 (311)
T ss_pred eccCcceeeeeehhcCe--EEEEEecCccceeeEEEcCCcchhhhcc-CCeeEEEEccCCCCCceeEEe-------ccCC
Confidence 88999999999999999 88887655 779999999 999999888 789999999998764 4455 7777
Q ss_pred ceeEEEecCCCCCeeEecCCCccEEEEEccccceeeeeccCccceeE--ecccc----ccccccCcceEECcchhhh--c
Q 000725 1061 CIVEMKRIPKCAPLVVGHNGFGEFGIWDISKRVLVSRFSAARASIYQ--FFPIN----LFSWQRNGSVSMDASLELT--N 1132 (1329)
Q Consensus 1061 ~I~elKrFpkss~lIVTgSGDgtf~LWDIskg~llqsF~ahs~sV~s--fsP~~----s~S~d~~v~tfd~~s~d~~--l 1132 (1329)
.|+.| -|--++....|||.||+++|||++...+...|. |.++|.+ +-|.- ++-..|.|++||++.--++ +
T Consensus 85 NVtaV-gF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~l 162 (311)
T KOG0315|consen 85 NVTAV-GFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHEL 162 (311)
T ss_pred ceEEE-EEeecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcceEEeecCCCcEEEEEccCCcccccc
Confidence 89999 999999999999999999999999977766666 4488998 55654 6778899999999877665 2
Q ss_pred c-ccccccccCCCceeecCCCCccceEEEEeeccCccchh--hccccc----------ccCCCCcceeEEEeeeccceec
Q 000725 1133 T-ATTSLFSKHSEKSSFCPSVGEDSAIWLLVSTISDSDAQ--HNCMSR----------DCQKNPVRFWRLALLVKNRVIL 1199 (1329)
Q Consensus 1133 e-atv~~fSgdvn~VsF~P~sGeD~AiwLLVST~Sdd~t~--~Dlra~----------~~~gH~n~~wRLALl~K~siI~ 1199 (1329)
. ..-.++.+ ....| | |.-|. .+.+..+| |++--+ .|+-|..-.-+
T Consensus 163 iPe~~~~i~s----l~v~~----d-gsml~--a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~----------- 220 (311)
T KOG0315|consen 163 IPEDDTSIQS----LTVMP----D-GSMLA--AANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILR----------- 220 (311)
T ss_pred CCCCCcceee----EEEcC----C-CcEEE--EecCCccEEEEEccCCCccccceEhhheecccceEEE-----------
Confidence 1 11223333 77787 5 54444 34444444 777632 34444433333
Q ss_pred CCCCCCCceeeecCCCeEEeecCCCeEEEEEcccc-ceeeeeecccCceEEEEEecCCCCceEEEecCCCCCCccccCCC
Q 000725 1200 GSPLDPRASAIGASSGLGIIGTNDGLVYAWELSSG-NKLGILHHFKGGTVSCIATDDSGLQALAVAGDGPDGGRRQRDPR 1278 (1329)
Q Consensus 1200 Gs~ldpra~afs~SG~~gfaGT~DGlVYmWDLstG-~kL~tL~~Heg~rVSCVA~dps~p~~~AsA~d~~d~~~r~~~~~ 1278 (1329)
|-+||.+.|+++.+.|.+||+|.+.+= +---.|.+|++ +|+--+++ .+..=+..| +-|++.|+|++
T Consensus 221 --------C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~r-WvWdc~FS-~dg~YlvTa--ssd~~~rlW~~- 287 (311)
T KOG0315|consen 221 --------CLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQR-WVWDCAFS-ADGEYLVTA--SSDHTARLWDL- 287 (311)
T ss_pred --------EEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCc-eEEeeeec-cCccEEEec--CCCCceeeccc-
Confidence 779999999999999999999999877 33345789999 99999999 444434444 55677777777
Q ss_pred CCCCCcEEEee
Q 000725 1279 HGQNDHVRIWK 1289 (1329)
Q Consensus 1279 ~s~D~~VRiW~ 1289 (1329)
+....||.|.
T Consensus 288 -~~~k~v~qy~ 297 (311)
T KOG0315|consen 288 -SAGKEVRQYQ 297 (311)
T ss_pred -ccCceeeecC
Confidence 6666777775
No 48
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.75 E-value=1.1e-16 Score=177.55 Aligned_cols=269 Identities=13% Similarity=0.085 Sum_probs=207.1
Q ss_pred ccceeeecCCCcEEEEecCccCccccCCCccccccccccccCCCCcEEEEEecCcceeeeEEEecc-cceeEEEEe-cCC
Q 000725 946 ERSCALFTPDGQYLVLLDSMKTPYCREGRSDCLCSTCTSHRLDENAVKIVKVKPGYVSVVAKLKTD-DCVQCILVC-EPK 1023 (1329)
Q Consensus 946 ersglqFTPDGQ~LvLlgsik~p~CR~~~~dC~Cs~C~~s~seDNtVKIv~V~~G~vsll~kL~~h-~sV~cIlVc-Dpn 1023 (1329)
.-+.+.+.|+-.+++ +|++|+.--+|+..+|- .+.+|.+| ++|.|+.|+ |..
T Consensus 66 svFavsl~P~~~l~a------------------------TGGgDD~AflW~~~~ge--~~~eltgHKDSVt~~~Fshdgt 119 (399)
T KOG0296|consen 66 SVFAVSLHPNNNLVA------------------------TGGGDDLAFLWDISTGE--FAGELTGHKDSVTCCSFSHDGT 119 (399)
T ss_pred ceEEEEeCCCCceEE------------------------ecCCCceEEEEEccCCc--ceeEecCCCCceEEEEEccCce
Confidence 446788899888888 99999999999999998 99999999 999999999 999
Q ss_pred eEEEecCCCeEEEEeccCcceEEEeeeeecCCCCcccceeEEEecCCCCCeeEecCCCccEEEEEccccceeeeeccCcc
Q 000725 1024 HLIAVGESGKLHLWEMNSSWSAQVEECIIPINDCIYPCIVEMKRIPKCAPLVVGHNGFGEFGIWDISKRVLVSRFSAARA 1103 (1329)
Q Consensus 1024 hLVSaSdDGkL~IWDM~SgWsm~tee~Vi~~n~~v~p~I~elKrFpkss~lIVTgSGDgtf~LWDIskg~llqsF~ahs~ 1103 (1329)
+|+++..||+|+||+|.++-....+. .-..-|.=| +..+-++.++-|+-||.+=+|-|-++...+.|.||+.
T Consensus 120 lLATGdmsG~v~v~~~stg~~~~~~~-------~e~~dieWl-~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~ 191 (399)
T KOG0296|consen 120 LLATGDMSGKVLVFKVSTGGEQWKLD-------QEVEDIEWL-KWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNS 191 (399)
T ss_pred EEEecCCCccEEEEEcccCceEEEee-------cccCceEEE-EecccccEEEeecCCCcEEEEECCCcceeeEecCCCC
Confidence 99999999999999999987766664 222334446 6666799999999999999999999999999999999
Q ss_pred ceeE--ecccc----ccccccCcceEECcchhhh--------cc--------cccccccc--------------------
Q 000725 1104 SIYQ--FFPIN----LFSWQRNGSVSMDASLELT--------NT--------ATTSLFSK-------------------- 1141 (1329)
Q Consensus 1104 sV~s--fsP~~----s~S~d~~v~tfd~~s~d~~--------le--------atv~~fSg-------------------- 1141 (1329)
++.+ |.|+| .+.-||+|++|...+|--. ++ +.-..+.+
T Consensus 192 ~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~ 271 (399)
T KOG0296|consen 192 PCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCN 271 (399)
T ss_pred CcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEec
Confidence 9999 99999 7778999999998776322 00 11111111
Q ss_pred -------------CCCceeecCCCCccceEEEEee--ccCccchhhcccccc---cCCCCcceeEEEeeeccceecCCCC
Q 000725 1142 -------------HSEKSSFCPSVGEDSAIWLLVS--TISDSDAQHNCMSRD---CQKNPVRFWRLALLVKNRVILGSPL 1203 (1329)
Q Consensus 1142 -------------dvn~VsF~P~sGeD~AiwLLVS--T~Sdd~t~~Dlra~~---~~gH~n~~wRLALl~K~siI~Gs~l 1203 (1329)
.+++|.|.|+ .+..=|.. ..+..+.+||+.+.+ -=-|...+-+|.
T Consensus 272 n~~~~~l~~~~e~~~esve~~~~----ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~------------- 334 (399)
T KOG0296|consen 272 NGTVPELKPSQEELDESVESIPS----SSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLK------------- 334 (399)
T ss_pred CCCCccccccchhhhhhhhhccc----ccccchhhcccccceEEEEecccchhheeccCCCceEEEE-------------
Confidence 2334555552 23333333 444455559998443 234666666644
Q ss_pred CCCceeeecCCCeEEeecCCCeEEEEEccccceeeeeecccCceEEEEEecCCCCceEEEecCCCCCCccccC
Q 000725 1204 DPRASAIGASSGLGIIGTNDGLVYAWELSSGNKLGILHHFKGGTVSCIATDDSGLQALAVAGDGPDGGRRQRD 1276 (1329)
Q Consensus 1204 dpra~afs~SG~~gfaGT~DGlVYmWDLstG~kL~tL~~Heg~rVSCVA~dps~p~~~AsA~d~~d~~~r~~~ 1276 (1329)
+-+ -.|+++++.||.||.||..||+.+.++.||+. -|.++++.|.+.. +.++ +.|+|.||+.
T Consensus 335 ------w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~-~Il~f~ls~~~~~-vvT~--s~D~~a~VF~ 396 (399)
T KOG0296|consen 335 ------WLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQM-GILDFALSPQKRL-VVTV--SDDNTALVFE 396 (399)
T ss_pred ------EcC-cchheeeccCceEEeeeccccceEEEEecCch-heeEEEEcCCCcE-EEEe--cCCCeEEEEe
Confidence 223 58999999999999999999999999999999 6999999998887 5666 2344444443
No 49
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.73 E-value=3.6e-16 Score=178.85 Aligned_cols=273 Identities=18% Similarity=0.174 Sum_probs=202.5
Q ss_pred ccccceeeecCCCcEEEEecCccCccccCCCccccccccccccCCCCcEEEEEecCcceeeeEEEecc-cceeEEEEe-c
Q 000725 944 ALERSCALFTPDGQYLVLLDSMKTPYCREGRSDCLCSTCTSHRLDENAVKIVKVKPGYVSVVAKLKTD-DCVQCILVC-E 1021 (1329)
Q Consensus 944 ~~ersglqFTPDGQ~LvLlgsik~p~CR~~~~dC~Cs~C~~s~seDNtVKIv~V~~G~vsll~kL~~h-~sV~cIlVc-D 1021 (1329)
+-.-+.++|+|.|.||+ ++-..++||||+-.---.=|..+|... +.|.+|.|. |
T Consensus 59 ~~~vtVAkySPsG~yiA------------------------SGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~d 114 (603)
T KOG0318|consen 59 AHQVTVAKYSPSGFYIA------------------------SGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFD 114 (603)
T ss_pred cceeEEEEeCCCceEEe------------------------ecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCC
Confidence 44567899999999999 999999999999554222366677777 999999999 9
Q ss_pred CCeEEEecCC----CeEEEEe--------------ccCcceEEEee----------eee----cCCC------Cccccee
Q 000725 1022 PKHLIAVGES----GKLHLWE--------------MNSSWSAQVEE----------CII----PIND------CIYPCIV 1063 (1329)
Q Consensus 1022 pnhLVSaSdD----GkL~IWD--------------M~SgWsm~tee----------~Vi----~~n~------~v~p~I~ 1063 (1329)
..+||++|+. |.++.|| ||+--.-++-- .|+ |+.+ -|+.-+.
T Consensus 115 s~RI~avGEGrerfg~~F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~ 194 (603)
T KOG0318|consen 115 SKRIAAVGEGRERFGHVFLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVN 194 (603)
T ss_pred CcEEEEEecCccceeEEEEecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeeccccccccee
Confidence 9999999976 4689999 33321111100 122 4333 2677777
Q ss_pred EEEecCCCCCeeEecCCCccEEEEEccccceeeeec---cCccceeE--ecccc----ccccccCcceEECcchhhh---
Q 000725 1064 EMKRIPKCAPLVVGHNGFGEFGIWDISKRVLVSRFS---AARASIYQ--FFPIN----LFSWQRNGSVSMDASLELT--- 1131 (1329)
Q Consensus 1064 elKrFpkss~lIVTgSGDgtf~LWDIskg~llqsF~---ahs~sV~s--fsP~~----s~S~d~~v~tfd~~s~d~~--- 1131 (1329)
++ ||++++.+.+|.+.||++-|+|=.+|.++-.|+ ||.++||. .+|++ +.|-|.++++|++....+.
T Consensus 195 ~V-RysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~ 273 (603)
T KOG0318|consen 195 CV-RYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTW 273 (603)
T ss_pred eE-EECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEe
Confidence 78 999999999999999999999999999999999 99999999 89999 8999999999999887665
Q ss_pred -cccc--ccccccCCCceeecCCCCccceEEEEeeccCccchhhccc----ccccCCCCcceeEEEeeeccceecCCCCC
Q 000725 1132 -NTAT--TSLFSKHSEKSSFCPSVGEDSAIWLLVSTISDSDAQHNCM----SRDCQKNPVRFWRLALLVKNRVILGSPLD 1204 (1329)
Q Consensus 1132 -leat--v~~fSgdvn~VsF~P~sGeD~AiwLLVST~Sdd~t~~Dlr----a~~~~gH~n~~wRLALl~K~siI~Gs~ld 1204 (1329)
+..+ .|-+-. ++ . +| . |++=+++..+..++.. ++..+||.-..-.|+
T Consensus 274 ~~~~~v~dqqvG~----lW-q----kd-~--lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLt-------------- 327 (603)
T KOG0318|consen 274 PMGSTVEDQQVGC----LW-Q----KD-H--LITVSLSGTINYLNPSDPSVLKVISGHNKSITALT-------------- 327 (603)
T ss_pred ecCCchhceEEEE----EE-e----CC-e--EEEEEcCcEEEEecccCCChhheecccccceeEEE--------------
Confidence 1211 222222 21 1 13 2 2222344444444433 677888887777654
Q ss_pred CCceeeecCCCeEEeecCCCeEEEEEccccceeeee-ecccCceEEEEEecCCCCceEEEecCCCCCCccccCC
Q 000725 1205 PRASAIGASSGLGIIGTNDGLVYAWELSSGNKLGIL-HHFKGGTVSCIATDDSGLQALAVAGDGPDGGRRQRDP 1277 (1329)
Q Consensus 1205 pra~afs~SG~~gfaGT~DGlVYmWDLstG~kL~tL-~~Heg~rVSCVA~dps~p~~~AsA~d~~d~~~r~~~~ 1277 (1329)
.++.|.|+++|+.||.|.-||+.+|..-... +.|.+ .|.+++.+.++. +.+. +||-|||+-+-
T Consensus 328 -----v~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~n-qI~~~~~~~~~~--~~t~--g~Dd~l~~~~~ 391 (603)
T KOG0318|consen 328 -----VSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTN-QIKGMAASESGE--LFTI--GWDDTLRVISL 391 (603)
T ss_pred -----EcCCCCEEEeeccCceEEEEecCCccccccccccccc-eEEEEeecCCCc--EEEE--ecCCeEEEEec
Confidence 6889999999999999999999999865444 88999 699999995444 4555 46666666543
No 50
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.73 E-value=9.2e-16 Score=175.57 Aligned_cols=273 Identities=14% Similarity=0.189 Sum_probs=203.3
Q ss_pred ceeeecCCCcEEEEecCccCccccCCCccccccccccccCCCCcEEEEEecCcceeeeEEEe---cc-cceeEEEEe-cC
Q 000725 948 SCALFTPDGQYLVLLDSMKTPYCREGRSDCLCSTCTSHRLDENAVKIVKVKPGYVSVVAKLK---TD-DCVQCILVC-EP 1022 (1329)
Q Consensus 948 sglqFTPDGQ~LvLlgsik~p~CR~~~~dC~Cs~C~~s~seDNtVKIv~V~~G~vsll~kL~---~h-~sV~cIlVc-Dp 1022 (1329)
.+++|+|||.+.+ +.+.|++|-|||=++|- .+-.|+ +| ++|-.|.|. |.
T Consensus 194 ~~VRysPDG~~Fa------------------------t~gsDgki~iyDGktge--~vg~l~~~~aHkGsIfalsWsPDs 247 (603)
T KOG0318|consen 194 NCVRYSPDGSRFA------------------------TAGSDGKIYIYDGKTGE--KVGELEDSDAHKGSIFALSWSPDS 247 (603)
T ss_pred eeEEECCCCCeEE------------------------EecCCccEEEEcCCCcc--EEEEecCCCCccccEEEEEECCCC
Confidence 4799999999999 89999999999999988 999999 99 999999999 99
Q ss_pred CeEEEecCCCeEEEEeccCcceEEEee-----------------------------eeecCCC-------CcccceeEEE
Q 000725 1023 KHLIAVGESGKLHLWEMNSSWSAQVEE-----------------------------CIIPIND-------CIYPCIVEMK 1066 (1329)
Q Consensus 1023 nhLVSaSdDGkL~IWDM~SgWsm~tee-----------------------------~Vi~~n~-------~v~p~I~elK 1066 (1329)
.+++++|-|.+++|||+++.-++++.- |+-++++ ||.-.|-.|
T Consensus 248 ~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaL- 326 (603)
T KOG0318|consen 248 TQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITAL- 326 (603)
T ss_pred ceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEE-
Confidence 999999999999999966554444332 1112222 366666677
Q ss_pred ecCCCCCeeEecCCCccEEEEEccccceeeee-ccCccceeEecccc-----ccccccCcceEECcchhhh----ccccc
Q 000725 1067 RIPKCAPLVVGHNGFGEFGIWDISKRVLVSRF-SAARASIYQFFPIN-----LFSWQRNGSVSMDASLELT----NTATT 1136 (1329)
Q Consensus 1067 rFpkss~lIVTgSGDgtf~LWDIskg~llqsF-~ahs~sV~sfsP~~-----s~S~d~~v~tfd~~s~d~~----leatv 1136 (1329)
...+++..|++||+||.|.=||+.+|..=.-+ .+|+.-|.++.-.+ +++||.++++.++...... ...-.
T Consensus 327 tv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~ 406 (603)
T KOG0318|consen 327 TVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGS 406 (603)
T ss_pred EEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCC
Confidence 88999999999999999999999999886666 88999999965555 8899999999988554433 11112
Q ss_pred cccccCCCceeecCCCCccceEEEEeeccCccchhhcccccccCCCCcceeEEEeeeccceecCCCCCCCceeeecCCCe
Q 000725 1137 SLFSKHSEKSSFCPSVGEDSAIWLLVSTISDSDAQHNCMSRDCQKNPVRFWRLALLVKNRVILGSPLDPRASAIGASSGL 1216 (1329)
Q Consensus 1137 ~~fSgdvn~VsF~P~sGeD~AiwLLVST~Sdd~t~~Dlra~~~~gH~n~~wRLALl~K~siI~Gs~ldpra~afs~SG~~ 1216 (1329)
||- + ++-.+ .++ .++|.+.++-.-+-|.+--. . ..+ .+.|.++|+++.|.+
T Consensus 407 QP~-~----lav~~--d~~---~avv~~~~~iv~l~~~~~~~---------~------~~~----~y~~s~vAv~~~~~~ 457 (603)
T KOG0318|consen 407 QPK-G----LAVLS--DGG---TAVVACISDIVLLQDQTKVS---------S------IPI----GYESSAVAVSPDGSE 457 (603)
T ss_pred Cce-e----EEEcC--CCC---EEEEEecCcEEEEecCCcce---------e------ecc----ccccceEEEcCCCCE
Confidence 222 2 33332 223 33444444433333332110 1 112 245689999999999
Q ss_pred EEeecCCCeEEEEEccccceee--eeecccCceEEEEEecCCCCceEEEecCCCCCCccccCCCCCCCCcEEEeeeCCC
Q 000725 1217 GIIGTNDGLVYAWELSSGNKLG--ILHHFKGGTVSCIATDDSGLQALAVAGDGPDGGRRQRDPRHGQNDHVRIWKMDPN 1293 (1329)
Q Consensus 1217 gfaGT~DGlVYmWDLstG~kL~--tL~~Heg~rVSCVA~dps~p~~~AsA~d~~d~~~r~~~~~~s~D~~VRiW~~~~~ 1293 (1329)
++.|..||.||++-|+.+.... .+.-|.+ .+++||++|++-- +|++ -+.+.|-+|+....
T Consensus 458 vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a-~iT~vaySpd~~y-la~~---------------Da~rkvv~yd~~s~ 519 (603)
T KOG0318|consen 458 VAVGGQDGKVHVYSLSGDELKEEAKLLEHRA-AITDVAYSPDGAY-LAAG---------------DASRKVVLYDVASR 519 (603)
T ss_pred EEEecccceEEEEEecCCcccceeeeecccC-CceEEEECCCCcE-EEEe---------------ccCCcEEEEEcccC
Confidence 9999999999999999977543 5678999 8999999987775 6666 35677777776554
No 51
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.73 E-value=1.8e-15 Score=151.18 Aligned_cols=250 Identities=12% Similarity=0.044 Sum_probs=169.8
Q ss_pred ceeeecCCCcEEEEecCccCccccCCCccccccccccccCCCCcEEEEEecCcceeeeEEEecccceeEEEEe-cCCeE-
Q 000725 948 SCALFTPDGQYLVLLDSMKTPYCREGRSDCLCSTCTSHRLDENAVKIVKVKPGYVSVVAKLKTDDCVQCILVC-EPKHL- 1025 (1329)
Q Consensus 948 sglqFTPDGQ~LvLlgsik~p~CR~~~~dC~Cs~C~~s~seDNtVKIv~V~~G~vsll~kL~~h~sV~cIlVc-DpnhL- 1025 (1329)
.+++|+|||++|+. .++.+++|++|++.+|. ++.++..+..+..+.+. |.+.+
T Consensus 34 ~~l~~~~dg~~l~~-----------------------~~~~~~~v~~~d~~~~~--~~~~~~~~~~~~~~~~~~~g~~l~ 88 (300)
T TIGR03866 34 RGITLSKDGKLLYV-----------------------CASDSDTIQVIDLATGE--VIGTLPSGPDPELFALHPNGKILY 88 (300)
T ss_pred CceEECCCCCEEEE-----------------------EECCCCeEEEEECCCCc--EEEeccCCCCccEEEECCCCCEEE
Confidence 47999999998741 34578999999999987 77778777777788777 77766
Q ss_pred EEecCCCeEEEEeccCcceEEEeeeeecCCCCcccceeEEEecCCCCCeeEecCCCc-cEEEEEccccceeeeecc-Ccc
Q 000725 1026 IAVGESGKLHLWEMNSSWSAQVEECIIPINDCIYPCIVEMKRIPKCAPLVVGHNGFG-EFGIWDISKRVLVSRFSA-ARA 1103 (1329)
Q Consensus 1026 VSaSdDGkL~IWDM~SgWsm~tee~Vi~~n~~v~p~I~elKrFpkss~lIVTgSGDg-tf~LWDIskg~llqsF~a-hs~ 1103 (1329)
+++++|++|++||+.+.-.+.... . ...+..+ .|.+++++++.++.++ .+.+||..++.++..+.. +..
T Consensus 89 ~~~~~~~~l~~~d~~~~~~~~~~~-------~-~~~~~~~-~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 159 (300)
T TIGR03866 89 IANEDDNLVTVIDIETRKVLAEIP-------V-GVEPEGM-AVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQRP 159 (300)
T ss_pred EEcCCCCeEEEEECCCCeEEeEee-------C-CCCcceE-EECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCCCc
Confidence 455789999999998854333322 1 1123456 7888899999888875 467789999988765432 233
Q ss_pred ceeEecccc-----ccccccCcceEECcchhhhc--ccccccccc---CCCceeecCCCCccceEEEEeecc-Cccchhh
Q 000725 1104 SIYQFFPIN-----LFSWQRNGSVSMDASLELTN--TATTSLFSK---HSEKSSFCPSVGEDSAIWLLVSTI-SDSDAQH 1172 (1329)
Q Consensus 1104 sV~sfsP~~-----s~S~d~~v~tfd~~s~d~~l--eatv~~fSg---dvn~VsF~P~sGeD~AiwLLVST~-Sdd~t~~ 1172 (1329)
...+|+|++ ..+.++.+.+|+..+.+... ......... ..-.+.|+| | +..++++.. ++....|
T Consensus 160 ~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~----d-g~~~~~~~~~~~~i~v~ 234 (300)
T TIGR03866 160 RFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTK----D-GKTAFVALGPANRVAVV 234 (300)
T ss_pred cEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECC----C-CCEEEEEcCCCCeEEEE
Confidence 334589998 22358889999998876541 111111110 112377888 5 555555543 4456668
Q ss_pred cccccccCCCCcceeEEEeeeccceecCCCCCCCceeeecCCCeEEee-cCCCeEEEEEccccceeeeeecccCceEEEE
Q 000725 1173 NCMSRDCQKNPVRFWRLALLVKNRVILGSPLDPRASAIGASSGLGIIG-TNDGLVYAWELSSGNKLGILHHFKGGTVSCI 1251 (1329)
Q Consensus 1173 Dlra~~~~gH~n~~wRLALl~K~siI~Gs~ldpra~afs~SG~~gfaG-T~DGlVYmWDLstG~kL~tL~~Heg~rVSCV 1251 (1329)
|++..+ .+.. +-.|. -|..+++++.|.+++++ ..+|.|.+||+.+++.+.++....+ ...|
T Consensus 235 d~~~~~---------~~~~-----~~~~~--~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~~~--~~~~ 296 (300)
T TIGR03866 235 DAKTYE---------VLDY-----LLVGQ--RVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVGRL--PWGV 296 (300)
T ss_pred ECCCCc---------EEEE-----EEeCC--CcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcccc--ccee
Confidence 876433 1111 11122 35678899999999986 5799999999999999999976544 5666
Q ss_pred Eec
Q 000725 1252 ATD 1254 (1329)
Q Consensus 1252 A~d 1254 (1329)
|++
T Consensus 297 ~~~ 299 (300)
T TIGR03866 297 VVR 299 (300)
T ss_pred EeC
Confidence 665
No 52
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.72 E-value=1.3e-16 Score=180.43 Aligned_cols=236 Identities=14% Similarity=0.194 Sum_probs=182.3
Q ss_pred cccceeeecCCCcEEEEecCccCccccCCCccccccccccccCCCCcEEEEEecCccee--eeEE---E-----------
Q 000725 945 LERSCALFTPDGQYLVLLDSMKTPYCREGRSDCLCSTCTSHRLDENAVKIVKVKPGYVS--VVAK---L----------- 1008 (1329)
Q Consensus 945 ~ersglqFTPDGQ~LvLlgsik~p~CR~~~~dC~Cs~C~~s~seDNtVKIv~V~~G~vs--ll~k---L----------- 1008 (1329)
+--.|+.||||+.|+. +++.+.+|-=|+|-+|+.. .+.+ +
T Consensus 143 ~s~~~vals~d~~~~f------------------------sask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r 198 (479)
T KOG0299|consen 143 LSVTSVALSPDDKRVF------------------------SASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESR 198 (479)
T ss_pred CcceEEEeecccccee------------------------ecCCCcceeeeehhcCcccccccccchhhhhccCCCCccc
Confidence 4457899999999999 9999999999999999843 2222 2
Q ss_pred ecc-cceeEEEEe-cCCeEEEecCCCeEEEEeccCcceEEEeeeeecCCCCcccceeEEEecCCCCCeeEecCCCccEEE
Q 000725 1009 KTD-DCVQCILVC-EPKHLIAVGESGKLHLWEMNSSWSAQVEECIIPINDCIYPCIVEMKRIPKCAPLVVGHNGFGEFGI 1086 (1329)
Q Consensus 1009 ~~h-~sV~cIlVc-DpnhLVSaSdDGkL~IWDM~SgWsm~tee~Vi~~n~~v~p~I~elKrFpkss~lIVTgSGDgtf~L 1086 (1329)
++| ..+.|++|+ |.+||++++.|..|+|||..|.--+.++- +|...|+.| .|-+..+.+.+++.|.++++
T Consensus 199 ~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~-------ghr~~V~~L-~fr~gt~~lys~s~Drsvkv 270 (479)
T KOG0299|consen 199 KGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFK-------GHRGAVSSL-AFRKGTSELYSASADRSVKV 270 (479)
T ss_pred ccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhccc-------ccccceeee-eeecCccceeeeecCCceEE
Confidence 267 789999999 99999999999999999999988888866 999999999 99999999999999999999
Q ss_pred EEccccceeeeeccCccceeEecccc------ccccccCcceEECcchhhhccccccccccCCCceeecCCCCccceEEE
Q 000725 1087 WDISKRVLVSRFSAARASIYQFFPIN------LFSWQRNGSVSMDASLELTNTATTSLFSKHSEKSSFCPSVGEDSAIWL 1160 (1329)
Q Consensus 1087 WDIskg~llqsF~ahs~sV~sfsP~~------s~S~d~~v~tfd~~s~d~~leatv~~fSgdvn~VsF~P~sGeD~AiwL 1160 (1329)
|++.-...+.+|.+|.+-|+++.--. -+--|+++++|.+ .|..+ .-|.+
T Consensus 271 w~~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi--~eesq-------------lifrg---------- 325 (479)
T KOG0299|consen 271 WSIDQLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKI--PEESQ-------------LIFRG---------- 325 (479)
T ss_pred EehhHhHHHHHHhCCccceeeechhcccceEEeccccceeEEEec--cccce-------------eeeeC----------
Confidence 99999999999999999998854332 1223344444443 11111 11111
Q ss_pred EeeccCccchhhcccccccCCCCcceeEEEeeeccceecCCCCCCCceeeecCCCeEEeecCCCeEEEEEccccceeeee
Q 000725 1161 LVSTISDSDAQHNCMSRDCQKNPVRFWRLALLVKNRVILGSPLDPRASAIGASSGLGIIGTNDGLVYAWELSSGNKLGIL 1240 (1329)
Q Consensus 1161 LVST~Sdd~t~~Dlra~~~~gH~n~~wRLALl~K~siI~Gs~ldpra~afs~SG~~gfaGT~DGlVYmWDLstG~kL~tL 1240 (1329)
|-.. +- |+.=.+..|+++|+.||.|++|+++|.+-|.+.
T Consensus 326 ---------------------~~~s-------------------id-cv~~In~~HfvsGSdnG~IaLWs~~KKkplf~~ 364 (479)
T KOG0299|consen 326 ---------------------GEGS-------------------ID-CVAFINDEHFVSGSDNGSIALWSLLKKKPLFTS 364 (479)
T ss_pred ---------------------CCCC-------------------ee-eEEEecccceeeccCCceEEEeeecccCceeEe
Confidence 1000 11 222357789999999999999999999999877
Q ss_pred e-cc--cCc--------eEEEEEecCCCCceEEEecCCCCCCccccCCCCCCCCcEEEeeeCCCc
Q 000725 1241 H-HF--KGG--------TVSCIATDDSGLQALAVAGDGPDGGRRQRDPRHGQNDHVRIWKMDPNL 1294 (1329)
Q Consensus 1241 ~-~H--eg~--------rVSCVA~dps~p~~~AsA~d~~d~~~r~~~~~~s~D~~VRiW~~~~~~ 1294 (1329)
. +| ... +|++||+-| .++.+|++ |||+-||+|++.+|+
T Consensus 365 ~~AHgv~~~~~~~~~~~Witsla~i~-~sdL~asG---------------S~~G~vrLW~i~~g~ 413 (479)
T KOG0299|consen 365 RLAHGVIPELDPVNGNFWITSLAVIP-GSDLLASG---------------SWSGCVRLWKIEDGL 413 (479)
T ss_pred eccccccCCccccccccceeeeEecc-cCceEEec---------------CCCCceEEEEecCCc
Confidence 3 22 122 899999994 45557777 888888888888883
No 53
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.72 E-value=1.6e-16 Score=185.42 Aligned_cols=232 Identities=14% Similarity=0.110 Sum_probs=188.1
Q ss_pred eeeEEEecc-cceeEEEEecCCeEEEecCCCeEEEEec-cCcceEEEeeeeecCCCCcccceeE-EEecCCCCC-eeEec
Q 000725 1003 SVVAKLKTD-DCVQCILVCEPKHLIAVGESGKLHLWEM-NSSWSAQVEECIIPINDCIYPCIVE-MKRIPKCAP-LVVGH 1078 (1329)
Q Consensus 1003 sll~kL~~h-~sV~cIlVcDpnhLVSaSdDGkL~IWDM-~SgWsm~tee~Vi~~n~~v~p~I~e-lKrFpkss~-lIVTg 1078 (1329)
.+.++|.|| ..|+.+++.++--++|+|.||++.+|+= .-.|.-...++ ++-..|.. + .|+.++. .|+.|
T Consensus 5 ~ls~~l~gH~~DVr~v~~~~~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~------~~~g~i~~~i-~y~e~~~~~l~~g 77 (745)
T KOG0301|consen 5 KLSHELEGHKSDVRAVAVTDGVCIISGSRDGTVKVWAKKGKQYLETHAFE------GPKGFIANSI-CYAESDKGRLVVG 77 (745)
T ss_pred eeEEEeccCccchheeEecCCeEEeecCCCCceeeeeccCcccccceecc------cCcceeeccc-eeccccCcceEee
Confidence 467899999 8999999999999999999999999994 77787755540 23333333 3 5555444 59999
Q ss_pred CCCccEEEEEccccceeeeeccCccceeEec----cc-cccccccCcceEECcchhhhccccccccccCCCceeecCCCC
Q 000725 1079 NGFGEFGIWDISKRVLVSRFSAARASIYQFF----PI-NLFSWQRNGSVSMDASLELTNTATTSLFSKHSEKSSFCPSVG 1153 (1329)
Q Consensus 1079 SGDgtf~LWDIskg~llqsF~ahs~sV~sfs----P~-~s~S~d~~v~tfd~~s~d~~leatv~~fSgdvn~VsF~P~sG 1153 (1329)
+-|+++++|-.+....+.++.+|...|.+++ ++ -++|||.+.++|-.+.+-..+.+|...|=. |.++|
T Consensus 78 ~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~~iSgSWD~TakvW~~~~l~~~l~gH~asVWA----v~~l~--- 150 (745)
T KOG0301|consen 78 GMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGTLISGSWDSTAKVWRIGELVYSLQGHTASVWA----VASLP--- 150 (745)
T ss_pred cccceEEEEecCCCCchhhhhccccceeeeecCCcCceEecccccceEEecchhhhcccCCcchheee----eeecC---
Confidence 9999999999999999999999999999955 22 289999999999988777768888888887 99999
Q ss_pred ccceEEEEeeccCccchhhccc--ccccCCCCcceeEEEeeeccceecCCCCCCCceeeecCCCeEEeecCCCeEEEEEc
Q 000725 1154 EDSAIWLLVSTISDSDAQHNCM--SRDCQKNPVRFWRLALLVKNRVILGSPLDPRASAIGASSGLGIIGTNDGLVYAWEL 1231 (1329)
Q Consensus 1154 eD~AiwLLVST~Sdd~t~~Dlr--a~~~~gH~n~~wRLALl~K~siI~Gs~ldpra~afs~SG~~gfaGT~DGlVYmWDL 1231 (1329)
|+ -++.+++|.++++|.-. +++|.||.--+=-|| ..++.++++.++||.|..|++
T Consensus 151 e~---~~vTgsaDKtIklWk~~~~l~tf~gHtD~VRgL~--------------------vl~~~~flScsNDg~Ir~w~~ 207 (745)
T KOG0301|consen 151 EN---TYVTGSADKTIKLWKGGTLLKTFSGHTDCVRGLA--------------------VLDDSHFLSCSNDGSIRLWDL 207 (745)
T ss_pred CC---cEEeccCcceeeeccCCchhhhhccchhheeeeE--------------------EecCCCeEeecCCceEEEEec
Confidence 33 78889999999998776 999999887665555 356778999999999999999
Q ss_pred cccceeeeeecccCceEEEEEecCCCCceEEEecCCCCCCccccC
Q 000725 1232 SSGNKLGILHHFKGGTVSCIATDDSGLQALAVAGDGPDGGRRQRD 1276 (1329)
Q Consensus 1232 stG~kL~tL~~Heg~rVSCVA~dps~p~~~AsA~d~~d~~~r~~~ 1276 (1329)
+|.+|-+.++|++ =|-||+....+.. +++|+ -|+|+|||+
T Consensus 208 -~ge~l~~~~ghtn-~vYsis~~~~~~~-Ivs~g--EDrtlriW~ 247 (745)
T KOG0301|consen 208 -DGEVLLEMHGHTN-FVYSISMALSDGL-IVSTG--EDRTLRIWK 247 (745)
T ss_pred -cCceeeeeeccce-EEEEEEecCCCCe-EEEec--CCceEEEee
Confidence 9999999999999 7999995545554 67772 344444443
No 54
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.72 E-value=2.3e-17 Score=191.52 Aligned_cols=269 Identities=16% Similarity=0.247 Sum_probs=208.7
Q ss_pred ccCCCCcEEEEEecCccee----eeEEEecc-cceeEEEEe-cCCeEEEecCCCeEEEEeccCc--ceEEEeeeeecCCC
Q 000725 985 HRLDENAVKIVKVKPGYVS----VVAKLKTD-DCVQCILVC-EPKHLIAVGESGKLHLWEMNSS--WSAQVEECIIPIND 1056 (1329)
Q Consensus 985 s~seDNtVKIv~V~~G~vs----ll~kL~~h-~sV~cIlVc-DpnhLVSaSdDGkL~IWDM~Sg--Wsm~tee~Vi~~n~ 1056 (1329)
++|-|++||+|++..-+-. -+++++.| +=|.+|+.| +++-|+|||-|-+|++|+...+ |+|+|..
T Consensus 42 TgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir------- 114 (735)
T KOG0308|consen 42 TGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIR------- 114 (735)
T ss_pred ecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhh-------
Confidence 9999999999998776643 38889999 999999998 9999999999999999998887 9999998
Q ss_pred CcccceeEEEec-CCCCCeeEecCCCccEEEEEcccc--ceeeeec---------cCccceeEe--cccc----cccccc
Q 000725 1057 CIYPCIVEMKRI-PKCAPLVVGHNGFGEFGIWDISKR--VLVSRFS---------AARASIYQF--FPIN----LFSWQR 1118 (1329)
Q Consensus 1057 ~v~p~I~elKrF-pkss~lIVTgSGDgtf~LWDIskg--~llqsF~---------ahs~sV~sf--sP~~----s~S~d~ 1118 (1329)
=|.-+|-+| .+ -+...+++||+-|+.|-||||.+| +++.+|. ||.++||+| +|.+ ++.-++
T Consensus 115 ~H~DYVkcl-a~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek 193 (735)
T KOG0308|consen 115 THKDYVKCL-AYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEK 193 (735)
T ss_pred cccchheee-eecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCccc
Confidence 788888888 66 778899999999999999999999 5555553 899999994 4554 788899
Q ss_pred CcceEECcchhhhccccccccccCCCceeecCCCCccceEEEEeeccCccchhhccc----ccccCCCCcceeEEEeeec
Q 000725 1119 NGSVSMDASLELTNTATTSLFSKHSEKSSFCPSVGEDSAIWLLVSTISDSDAQHNCM----SRDCQKNPVRFWRLALLVK 1194 (1329)
Q Consensus 1119 ~v~tfd~~s~d~~leatv~~fSgdvn~VsF~P~sGeD~AiwLLVST~Sdd~t~~Dlr----a~~~~gH~n~~wRLALl~K 1194 (1329)
.+++||-.++.+.+- ..||.++|+-.= .-+| |..+|.++-+.++++||++ .-+|..|.-.+|.|..
T Consensus 194 ~lr~wDprt~~kimk-----LrGHTdNVr~ll-~~dD-Gt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~--- 263 (735)
T KOG0308|consen 194 DLRLWDPRTCKKIMK-----LRGHTDNVRVLL-VNDD-GTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQS--- 263 (735)
T ss_pred ceEEeccccccceee-----eeccccceEEEE-EcCC-CCeEeecCCCceEEeeeccccceeeeEEeccCceEEEee---
Confidence 999999999988731 224555554331 2347 9999988888888899999 5567889999999773
Q ss_pred cceecCCCCCCCceeeecCCCeEEeecCCCeEEEEEccccceeeeeecccCceEEEEEecCCCCceEEEecCCCCCCccc
Q 000725 1195 NRVILGSPLDPRASAIGASSGLGIIGTNDGLVYAWELSSGNKLGILHHFKGGTVSCIATDDSGLQALAVAGDGPDGGRRQ 1274 (1329)
Q Consensus 1195 ~siI~Gs~ldpra~afs~SG~~gfaGT~DGlVYmWDLstG~kL~tL~~Heg~rVSCVA~dps~p~~~AsA~d~~d~~~r~ 1274 (1329)
+++=.|+++|.-||+||.=||.+-.+...+ +-++--|.-+..+-.+.. +=++
T Consensus 264 ----------------~~sf~~vYsG~rd~~i~~Tdl~n~~~~tli-ck~daPv~~l~~~~~~~~-~Wvt---------- 315 (735)
T KOG0308|consen 264 ----------------SPSFTHVYSGGRDGNIYRTDLRNPAKSTLI-CKEDAPVLKLHLHEHDNS-VWVT---------- 315 (735)
T ss_pred ----------------CCCcceEEecCCCCcEEecccCCchhheEe-ecCCCchhhhhhccccCC-ceee----------
Confidence 478889999999999999999986443333 222223444555533332 2333
Q ss_pred cCCCCCCCCcEEEeeeCCCcceeecCCCCccc
Q 000725 1275 RDPRHGQNDHVRIWKMDPNLGCVRNSNGDSKF 1306 (1329)
Q Consensus 1275 ~~~~~s~D~~VRiW~~~~~~~~~~~~~~~~~~ 1306 (1329)
.+|.+|+=|+..|-. --..+||--|
T Consensus 316 -----Ttds~I~rW~~~~~~--~l~~s~~~~~ 340 (735)
T KOG0308|consen 316 -----TTDSSIKRWKLEPDI--ALSVSGDLDF 340 (735)
T ss_pred -----eccccceecCCcccc--ccccCCCCCc
Confidence 788899999888866 2344455444
No 55
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.71 E-value=6e-17 Score=174.11 Aligned_cols=216 Identities=15% Similarity=0.131 Sum_probs=170.7
Q ss_pred ccCCCCcEEEEEecCcceeeeEEEecc-cceeEEEEe--cCCeEEEecCCCeEEEEeccCcceEEEeeeeecCCCCcccc
Q 000725 985 HRLDENAVKIVKVKPGYVSVVAKLKTD-DCVQCILVC--EPKHLIAVGESGKLHLWEMNSSWSAQVEECIIPINDCIYPC 1061 (1329)
Q Consensus 985 s~seDNtVKIv~V~~G~vsll~kL~~h-~sV~cIlVc--DpnhLVSaSdDGkL~IWDM~SgWsm~tee~Vi~~n~~v~p~ 1061 (1329)
.|+.|++||||+. +-...++++|+-| .+|.+|-+. +.++++++|=||+|++|||+-.=+++|+. +|-.+
T Consensus 78 ~a~GDGSLrl~d~-~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~-------gh~~~ 149 (311)
T KOG0277|consen 78 AASGDGSLRLFDL-TMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFN-------GHNSC 149 (311)
T ss_pred EEecCceEEEecc-CCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeec-------CCccE
Confidence 6889999999993 3334699999999 999999999 89999999999999999999999999987 99999
Q ss_pred eeEEEecCCCCCeeEecCCCccEEEEEccccceeeeeccCccceeE-----ecccc--ccccccCcceEECcchhhh---
Q 000725 1062 IVEMKRIPKCAPLVVGHNGFGEFGIWDISKRVLVSRFSAARASIYQ-----FFPIN--LFSWQRNGSVSMDASLELT--- 1131 (1329)
Q Consensus 1062 I~elKrFpkss~lIVTgSGDgtf~LWDIskg~llqsF~ahs~sV~s-----fsP~~--s~S~d~~v~tfd~~s~d~~--- 1131 (1329)
|+..+-=|..+.++++.||||+++||||..--.-+.|++|..-|++ +.+.. ++..|+.|++||+++..-.
T Consensus 150 Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~e 229 (311)
T KOG0277|consen 150 IYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFE 229 (311)
T ss_pred EEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhcccccee
Confidence 9999666788999999999999999999876665569999988877 44443 7778888888887776543
Q ss_pred ccccccccccCCCceeecCCCCccceEEEEeeccCccchhhcccccccCCCCcceeEEEeeeccceecCCCCCCCceeee
Q 000725 1132 NTATTSLFSKHSEKSSFCPSVGEDSAIWLLVSTISDSDAQHNCMSRDCQKNPVRFWRLALLVKNRVILGSPLDPRASAIG 1211 (1329)
Q Consensus 1132 leatv~~fSgdvn~VsF~P~sGeD~AiwLLVST~Sdd~t~~Dlra~~~~gH~n~~wRLALl~K~siI~Gs~ldpra~afs 1211 (1329)
+-++...+.+ |+|+|
T Consensus 230 L~gh~~AVRk----vk~Sp------------------------------------------------------------- 244 (311)
T KOG0277|consen 230 LNGHGLAVRK----VKFSP------------------------------------------------------------- 244 (311)
T ss_pred ecCCceEEEE----EecCc-------------------------------------------------------------
Confidence 2344554554 66665
Q ss_pred cCC-CeEEeecCCCeEEEEEcccccee-eeeecccCceEEEEEecCCCCceEEEecCCCCCCccccCC
Q 000725 1212 ASS-GLGIIGTNDGLVYAWELSSGNKL-GILHHFKGGTVSCIATDDSGLQALAVAGDGPDGGRRQRDP 1277 (1329)
Q Consensus 1212 ~SG-~~gfaGT~DGlVYmWDLstG~kL-~tL~~Heg~rVSCVA~dps~p~~~AsA~d~~d~~~r~~~~ 1277 (1329)
.- ..+++.+.|=++.+||...+.-+ .+..+|+. =|--+..++-++.-||++ +||..+.||.|
T Consensus 245 -h~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtE-Fv~g~Dws~~~~~~vAs~--gWDe~l~Vw~p 308 (311)
T KOG0277|consen 245 -HHASLLASASYDMTVRIWDPERQDSAIETVDHHTE-FVCGLDWSLFDPGQVAST--GWDELLYVWNP 308 (311)
T ss_pred -chhhHhhhccccceEEecccccchhhhhhhhccce-EEeccccccccCceeeec--ccccceeeecc
Confidence 21 24566788999999999966544 44456666 677788887777656555 68888888876
No 56
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.70 E-value=1.1e-16 Score=185.22 Aligned_cols=229 Identities=14% Similarity=0.101 Sum_probs=179.2
Q ss_pred eEEEecc-cceeEEEEe--cCCeEEEecCCCeEEEEeccCcceEEEeeeeecCCCCcccceeEE--E--ecCCCCCeeEe
Q 000725 1005 VAKLKTD-DCVQCILVC--EPKHLIAVGESGKLHLWEMNSSWSAQVEECIIPINDCIYPCIVEM--K--RIPKCAPLVVG 1077 (1329)
Q Consensus 1005 l~kL~~h-~sV~cIlVc--DpnhLVSaSdDGkL~IWDM~SgWsm~tee~Vi~~n~~v~p~I~el--K--rFpkss~lIVT 1077 (1329)
..||..+ +.|.||=+- +|=.| ++==.|+|+||+-+|--.++.++ +-++ + +|-.--+-||+
T Consensus 6 krk~~~rSdRVKsVd~HPtePw~l-a~LynG~V~IWnyetqtmVksfe------------V~~~PvRa~kfiaRknWiv~ 72 (794)
T KOG0276|consen 6 KRKFQSRSDRVKSVDFHPTEPWIL-AALYNGDVQIWNYETQTMVKSFE------------VSEVPVRAAKFIARKNWIVT 72 (794)
T ss_pred hhHhhccCCceeeeecCCCCceEE-EeeecCeeEEEecccceeeeeee------------ecccchhhheeeeccceEEE
Confidence 4466667 899999887 66544 45559999999999988888877 2222 1 45555789999
Q ss_pred cCCCccEEEEEccccceeeeeccCccceeE--ecccc----ccccccCcceEECcchhhh---ccccccccccCCCceee
Q 000725 1078 HNGFGEFGIWDISKRVLVSRFSAARASIYQ--FFPIN----LFSWQRNGSVSMDASLELT---NTATTSLFSKHSEKSSF 1148 (1329)
Q Consensus 1078 gSGDgtf~LWDIskg~llqsF~ahs~sV~s--fsP~~----s~S~d~~v~tfd~~s~d~~---leatv~~fSgdvn~VsF 1148 (1329)
||-|+.||+++.-++.++.+|+||++-|-+ .-|.- +.|=|-+|+.|+....=.. .++|.|-|-. |.|
T Consensus 73 GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMq----v~f 148 (794)
T KOG0276|consen 73 GSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQ----VAF 148 (794)
T ss_pred ecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEE----EEe
Confidence 999999999999999999999999999988 66766 5667777888877654333 2444444444 899
Q ss_pred cCCCCccceEEEEeeccCccchhhcccc----cccCCCCcceeEEEeeeccceecCCCCCCCceeeecCC--CeEEeecC
Q 000725 1149 CPSVGEDSAIWLLVSTISDSDAQHNCMS----RDCQKNPVRFWRLALLVKNRVILGSPLDPRASAIGASS--GLGIIGTN 1222 (1329)
Q Consensus 1149 ~P~sGeD~AiwLLVST~Sdd~t~~Dlra----~~~~gH~n~~wRLALl~K~siI~Gs~ldpra~afs~SG--~~gfaGT~ 1222 (1329)
-| +| ...+..++++.+.+.|.+.. -+++||.-+.=++ ++=+.| .|+++|+.
T Consensus 149 nP---kD-~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~V-------------------dyy~~gdkpylIsgaD 205 (794)
T KOG0276|consen 149 NP---KD-PNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCV-------------------DYYTGGDKPYLISGAD 205 (794)
T ss_pred cC---CC-ccceeeeeccccEEEEEcCCCCCceeeeccccCcceE-------------------EeccCCCcceEEecCC
Confidence 99 78 66777888899999999984 3566777666554 443333 49999999
Q ss_pred CCeEEEEEccccceeeeeecccCceEEEEEecCCCCceEEEecCCCCCCccccCC
Q 000725 1223 DGLVYAWELSSGNKLGILHHFKGGTVSCIATDDSGLQALAVAGDGPDGGRRQRDP 1277 (1329)
Q Consensus 1223 DGlVYmWDLstG~kL~tL~~Heg~rVSCVA~dps~p~~~AsA~d~~d~~~r~~~~ 1277 (1329)
|.+|++||.+|.++++||+||.+ -|+++..||.-|. ++++ +-|||+|||--
T Consensus 206 D~tiKvWDyQtk~CV~TLeGHt~-Nvs~v~fhp~lpi-iisg--sEDGTvriWhs 256 (794)
T KOG0276|consen 206 DLTIKVWDYQTKSCVQTLEGHTN-NVSFVFFHPELPI-IISG--SEDGTVRIWNS 256 (794)
T ss_pred CceEEEeecchHHHHHHhhcccc-cceEEEecCCCcE-EEEe--cCCccEEEecC
Confidence 99999999999999999999999 8999999999998 7766 55788888754
No 57
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.70 E-value=8.8e-17 Score=186.44 Aligned_cols=240 Identities=15% Similarity=0.178 Sum_probs=184.8
Q ss_pred ccCCCCcEEEEEecCcceeeeEE--Eecc-cceeEEEEe--cCCeEEEecCCCeEEEEeccCcceEEEeeeeecCCCC--
Q 000725 985 HRLDENAVKIVKVKPGYVSVVAK--LKTD-DCVQCILVC--EPKHLIAVGESGKLHLWEMNSSWSAQVEECIIPINDC-- 1057 (1329)
Q Consensus 985 s~seDNtVKIv~V~~G~vsll~k--L~~h-~sV~cIlVc--DpnhLVSaSdDGkL~IWDM~SgWsm~tee~Vi~~n~~-- 1057 (1329)
+.+.|-|+|.|+|+++. ++-+ +.|| ++|.++++. ||+.+|++|-||.+.||||.-.-+-..++|.....+.
T Consensus 117 sasGDsT~r~Wdvk~s~--l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n 194 (720)
T KOG0321|consen 117 SASGDSTIRPWDVKTSR--LVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHN 194 (720)
T ss_pred EccCCceeeeeeeccce--eecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhcccc
Confidence 89999999999999988 7777 9999 999999998 9999999999999999998877755566655422222
Q ss_pred ------------------cccceeE---EEecCCCCCeeEecCC-CccEEEEEccccceeeeeccCccceeEeccccccc
Q 000725 1058 ------------------IYPCIVE---MKRIPKCAPLVVGHNG-FGEFGIWDISKRVLVSRFSAARASIYQFFPINLFS 1115 (1329)
Q Consensus 1058 ------------------v~p~I~e---lKrFpkss~lIVTgSG-Dgtf~LWDIskg~llqsF~ahs~sV~sfsP~~s~S 1115 (1329)
++..|.. + -+.++.+.|+|+++ |++|++|||+|-++.-.-+....+
T Consensus 195 ~~ptpskp~~kr~~k~kA~s~ti~ssvTv-v~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~----------- 262 (720)
T KOG0321|consen 195 TAPTPSKPLKKRIRKWKAASNTIFSSVTV-VLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSD----------- 262 (720)
T ss_pred CCCCCCchhhccccccccccCceeeeeEE-EEEeccceeeeccCCCcceEEEeecccccccccCCCccc-----------
Confidence 1222332 4 56778888998888 999999999998775443322222
Q ss_pred cccCcceEECcchhhh-ccccccccccCCCceeecCCCCccceEEEEeeccCccchhhccc------ccccCCCCcceeE
Q 000725 1116 WQRNGSVSMDASLELT-NTATTSLFSKHSEKSSFCPSVGEDSAIWLLVSTISDSDAQHNCM------SRDCQKNPVRFWR 1188 (1329)
Q Consensus 1116 ~d~~v~tfd~~s~d~~-leatv~~fSgdvn~VsF~P~sGeD~AiwLLVST~Sdd~t~~Dlr------a~~~~gH~n~~wR 1188 (1329)
-|.+. .++ ++ .+.|.- |.+|..||+|..|+.+++||++ .-.|.||.+....
T Consensus 263 ------~~~t~--skrs~G-----------~~nL~l---DssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~ 320 (720)
T KOG0321|consen 263 ------KYPTH--SKRSVG-----------QVNLIL---DSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFY 320 (720)
T ss_pred ------CccCc--ccceee-----------eEEEEe---cCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceee
Confidence 11111 111 22 133443 6778999999999999999999 5568889988888
Q ss_pred EEeeeccceecCCCCCCCceeeecCCCeEEeecCCCeEEEEEccccceeee-eecccCceEEEEEecCCCCceEEEecCC
Q 000725 1189 LALLVKNRVILGSPLDPRASAIGASSGLGIIGTNDGLVYAWELSSGNKLGI-LHHFKGGTVSCIATDDSGLQALAVAGDG 1267 (1329)
Q Consensus 1189 LALl~K~siI~Gs~ldpra~afs~SG~~gfaGT~DGlVYmWDLstG~kL~t-L~~Heg~rVSCVA~dps~p~~~AsA~d~ 1267 (1329)
++ ..+++.|-++++||.|..+|+|-+++..--.. |.+|.- .|+||+..|+.-.=+|.|
T Consensus 321 vk-----------------s~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~-eVt~V~w~pS~~t~v~Tc--- 379 (720)
T KOG0321|consen 321 VK-----------------SELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTR-EVTTVRWLPSATTPVATC--- 379 (720)
T ss_pred ee-----------------eecCCCCceEeccCCCcceeeeeecCccCChhhhhCcce-EEEEEeeccccCCCceee---
Confidence 77 78999999999999999999999999876554 468888 899999998885447777
Q ss_pred CCCCccccCCCCCCCCcEEEeeeCCC
Q 000725 1268 PDGGRRQRDPRHGQNDHVRIWKMDPN 1293 (1329)
Q Consensus 1268 ~d~~~r~~~~~~s~D~~VRiW~~~~~ 1293 (1329)
|-|.+|+||..-++
T Consensus 380 ------------SdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 380 ------------SDDFRVKIWRLSNG 393 (720)
T ss_pred ------------ccCcceEEEeccCc
Confidence 66888888888333
No 58
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=1.6e-15 Score=164.22 Aligned_cols=228 Identities=14% Similarity=0.144 Sum_probs=178.9
Q ss_pred eeeeEEEecc-cceeEEEEe-c-CCeEEEecCCCeEEEEeccC--cceEEEeeeeecCCCCcccceeEEEecCCCCCeeE
Q 000725 1002 VSVVAKLKTD-DCVQCILVC-E-PKHLIAVGESGKLHLWEMNS--SWSAQVEECIIPINDCIYPCIVEMKRIPKCAPLVV 1076 (1329)
Q Consensus 1002 vsll~kL~~h-~sV~cIlVc-D-pnhLVSaSdDGkL~IWDM~S--gWsm~tee~Vi~~n~~v~p~I~elKrFpkss~lIV 1076 (1329)
.-++++|++| +.|-.+++. - .+.|+|+|+|++|+||+..+ .|..++-- .++|-..|-.+ ++.+++++++
T Consensus 4 l~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vl-----d~~hkrsVRsv-Awsp~g~~La 77 (312)
T KOG0645|consen 4 LILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVL-----DDGHKRSVRSV-AWSPHGRYLA 77 (312)
T ss_pred ceeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEec-----cccchheeeee-eecCCCcEEE
Confidence 3477899999 778888888 3 56899999999999999886 45555433 34788999999 9999999999
Q ss_pred ecCCCccEEEEEccccce--eeeeccCccceeE--ecccc----ccccccCcceEECcchhhh-----ccccccccccCC
Q 000725 1077 GHNGFGEFGIWDISKRVL--VSRFSAARASIYQ--FFPIN----LFSWQRNGSVSMDASLELT-----NTATTSLFSKHS 1143 (1329)
Q Consensus 1077 TgSGDgtf~LWDIskg~l--lqsF~ahs~sV~s--fsP~~----s~S~d~~v~tfd~~s~d~~-----leatv~~fSgdv 1143 (1329)
++|+|.|..||-=..|.+ +.+++||.+-|-+ |++++ +||=|..|=+|.....++. |+.|.|-|-.
T Consensus 78 ~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~-- 155 (312)
T KOG0645|consen 78 SASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKH-- 155 (312)
T ss_pred EeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccE--
Confidence 999999999998776654 9999999999999 99999 8999999999999977777 5677774444
Q ss_pred CceeecCCCCccceEEEEeeccCccchhhccc-------ccccCCCCcceeEEEeeeccceecCCCCCCCceeeecCCCe
Q 000725 1144 EKSSFCPSVGEDSAIWLLVSTISDSDAQHNCM-------SRDCQKNPVRFWRLALLVKNRVILGSPLDPRASAIGASSGL 1216 (1329)
Q Consensus 1144 n~VsF~P~sGeD~AiwLLVST~Sdd~t~~Dlr-------a~~~~gH~n~~wRLALl~K~siI~Gs~ldpra~afs~SG~~ 1216 (1329)
|.|||. +| -|+..+-+++++.|+-. ..+.++|.+..|. .+|.+.|..
T Consensus 156 --V~WHPt--~d---lL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~-------------------~~F~~~G~r 209 (312)
T KOG0645|consen 156 --VIWHPT--ED---LLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWS-------------------LAFDNIGSR 209 (312)
T ss_pred --EEEcCC--cc---eeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEE-------------------EEecCCCce
Confidence 999992 44 34555677788876555 5678999999999 558999999
Q ss_pred EEeecCCCeEEEEEccccceeeeeec-ccCceEEEEEecCCCCceEEEecCCCCCCccc
Q 000725 1217 GIIGTNDGLVYAWELSSGNKLGILHH-FKGGTVSCIATDDSGLQALAVAGDGPDGGRRQ 1274 (1329)
Q Consensus 1217 gfaGT~DGlVYmWDLstG~kL~tL~~-Heg~rVSCVA~dps~p~~~AsA~d~~d~~~r~ 1274 (1329)
++++++|++|.+|-+- ..|.+ |.+ .+..|+.. +++||+| ++|+.+|+
T Consensus 210 l~s~sdD~tv~Iw~~~-----~~~~~~~sr-~~Y~v~W~---~~~IaS~--ggD~~i~l 257 (312)
T KOG0645|consen 210 LVSCSDDGTVSIWRLY-----TDLSGMHSR-ALYDVPWD---NGVIASG--GGDDAIRL 257 (312)
T ss_pred EEEecCCcceEeeeec-----cCcchhccc-ceEeeeec---ccceEec--cCCCEEEE
Confidence 9999999999999855 33332 333 56556665 4445554 34555554
No 59
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.70 E-value=4.6e-17 Score=174.80 Aligned_cols=269 Identities=13% Similarity=0.212 Sum_probs=213.4
Q ss_pred cCCCcEEEEecCccCccccCCCccccccccccccCCCCcEEEEEecCcceeeeEEEecc-cceeEEEEe-cCCeEEEecC
Q 000725 953 TPDGQYLVLLDSMKTPYCREGRSDCLCSTCTSHRLDENAVKIVKVKPGYVSVVAKLKTD-DCVQCILVC-EPKHLIAVGE 1030 (1329)
Q Consensus 953 TPDGQ~LvLlgsik~p~CR~~~~dC~Cs~C~~s~seDNtVKIv~V~~G~vsll~kL~~h-~sV~cIlVc-DpnhLVSaSd 1030 (1329)
||||-||+ +.+.|..=-+-+=.+|- -+-||+|| +.|-.-... +..+.+|++-
T Consensus 26 tp~g~fli------------------------sa~kd~~pmlr~g~tgd--wigtfeghkgavw~~~l~~na~~aasaaa 79 (334)
T KOG0278|consen 26 TPDGYFLI------------------------SASKDGKPMLRNGDTGD--WIGTFEGHKGAVWSATLNKNATRAASAAA 79 (334)
T ss_pred CCCceEEE------------------------EeccCCCchhccCCCCC--cEEeeeccCcceeeeecCchhhhhhhhcc
Confidence 89999999 56667777777888888 99999999 888776666 7788899999
Q ss_pred CCeEEEEeccCcceEEEeeeeecCCCCcccceeEEEecCCCCCeeEecCCCccEEEEEccccce-eeeeccCccceeE--
Q 000725 1031 SGKLHLWEMNSSWSAQVEECIIPINDCIYPCIVEMKRIPKCAPLVVGHNGFGEFGIWDISKRVL-VSRFSAARASIYQ-- 1107 (1329)
Q Consensus 1031 DGkL~IWDM~SgWsm~tee~Vi~~n~~v~p~I~elKrFpkss~lIVTgSGDgtf~LWDIskg~l-lqsF~ahs~sV~s-- 1107 (1329)
|=+-+|||.-||-...+++ |-+.+-.+ .|..+++.|+||+.+.-.||+|+.+-.. ...|.+|...|-.
T Consensus 80 dftakvw~a~tgdelhsf~--------hkhivk~~-af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~ 150 (334)
T KOG0278|consen 80 DFTAKVWDAVTGDELHSFE--------HKHIVKAV-AFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVL 150 (334)
T ss_pred cchhhhhhhhhhhhhhhhh--------hhheeeeE-EecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEE
Confidence 9999999999998888877 66666667 9999999999999999999999998776 8999999999877
Q ss_pred ecccc----ccccccCcceEECcchhhh-ccccccccccCCCceeecCCCCccceEEEEeeccCccchhhcccccccCCC
Q 000725 1108 FFPIN----LFSWQRNGSVSMDASLELT-NTATTSLFSKHSEKSSFCPSVGEDSAIWLLVSTISDSDAQHNCMSRDCQKN 1182 (1329)
Q Consensus 1108 fsP~~----s~S~d~~v~tfd~~s~d~~-leatv~~fSgdvn~VsF~P~sGeD~AiwLLVST~Sdd~t~~Dlra~~~~gH 1182 (1329)
|.--. +.+.|++||.||.+++.+. ...++++|.+ .-+++ | + -||+-+--....-||...=.
T Consensus 151 wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtS----lEvs~----d-G-~ilTia~gssV~Fwdaksf~---- 216 (334)
T KOG0278|consen 151 WCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTS----LEVSQ----D-G-RILTIAYGSSVKFWDAKSFG---- 216 (334)
T ss_pred EeccCceEEeeccCCceEEEEeccCcEEEEEecCCCCcc----eeecc----C-C-CEEEEecCceeEEecccccc----
Confidence 33322 4489999999999999988 3566776666 77887 4 3 34444444556668776222
Q ss_pred CcceeEEEeeeccceecCCCCCCCceeeecCCCeEEeecCCCeEEEEEccccceeeee-ecccCceEEEEEecCCCCceE
Q 000725 1183 PVRFWRLALLVKNRVILGSPLDPRASAIGASSGLGIIGTNDGLVYAWELSSGNKLGIL-HHFKGGTVSCIATDDSGLQAL 1261 (1329)
Q Consensus 1183 ~n~~wRLALl~K~siI~Gs~ldpra~afs~SG~~gfaGT~DGlVYmWDLstG~kL~tL-~~Heg~rVSCVA~dps~p~~~ 1261 (1329)
.-.+|.+ |-.-.++.+.|.-..++||.+|+.||-+|..||.-++.. .+|-| -|-||.++|++-- .
T Consensus 217 ~lKs~k~------------P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~g-pVhcVrFSPdGE~-y 282 (334)
T KOG0278|consen 217 LLKSYKM------------PCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFG-PVHCVRFSPDGEL-Y 282 (334)
T ss_pred ceeeccC------------ccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCC-ceEEEEECCCCce-e
Confidence 1122221 112245778888899999999999999999999999995 89999 8999999966654 6
Q ss_pred EEecCCCCCCccccCCCCCCCCcEEEeeeCCC-----cceeec
Q 000725 1262 AVAGDGPDGGRRQRDPRHGQNDHVRIWKMDPN-----LGCVRN 1299 (1329)
Q Consensus 1262 AsA~d~~d~~~r~~~~~~s~D~~VRiW~~~~~-----~~~~~~ 1299 (1329)
|++ |+||+||||.|-|. .+|++.
T Consensus 283 AsG---------------SEDGTirlWQt~~~~~~~~~~~~~~ 310 (334)
T KOG0278|consen 283 ASG---------------SEDGTIRLWQTTPGKTYGLWKCVKP 310 (334)
T ss_pred ecc---------------CCCceEEEEEecCCCchhhccccCh
Confidence 666 89999999998773 466664
No 60
>PTZ00420 coronin; Provisional
Probab=99.70 E-value=1.3e-15 Score=178.57 Aligned_cols=217 Identities=10% Similarity=0.038 Sum_probs=153.7
Q ss_pred ecCCCeEEEEeccCcceEEEeeeeecCCCCcccceeEEEecCCC-CCeeEecCCCccEEEEEccccc--------eeeee
Q 000725 1028 VGESGKLHLWEMNSSWSAQVEECIIPINDCIYPCIVEMKRIPKC-APLVVGHNGFGEFGIWDISKRV--------LVSRF 1098 (1329)
Q Consensus 1028 aSdDGkL~IWDM~SgWsm~tee~Vi~~n~~v~p~I~elKrFpks-s~lIVTgSGDgtf~LWDIskg~--------llqsF 1098 (1329)
+|.+|.|.+|++.....+.++. +|...|+.+ .|.+. +++|+||+.||+++|||+.++. .+..+
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~-------gH~~~V~~l-afsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L 121 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLK-------GHTSSILDL-QFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCIL 121 (568)
T ss_pred CCceeEEEeeecCCCceEEEEc-------CCCCCEEEE-EEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEe
Confidence 5678999999988765555555 899999999 88875 7999999999999999998753 35678
Q ss_pred ccCccceeE--ecccc-----ccccccCcceEECcchhhhc-cccccccccCCCceeecCCCCccceEEEEeeccCccch
Q 000725 1099 SAARASIYQ--FFPIN-----LFSWQRNGSVSMDASLELTN-TATTSLFSKHSEKSSFCPSVGEDSAIWLLVSTISDSDA 1170 (1329)
Q Consensus 1099 ~ahs~sV~s--fsP~~-----s~S~d~~v~tfd~~s~d~~l-eatv~~fSgdvn~VsF~P~sGeD~AiwLLVST~Sdd~t 1170 (1329)
.+|...|.+ |.|++ ++++|+.|++|++....... ..+.. .+.++.|+| | +..|.+++.+...+
T Consensus 122 ~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~----~V~Slswsp----d-G~lLat~s~D~~Ir 192 (568)
T PTZ00420 122 KGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPK----KLSSLKWNI----K-GNLLSGTCVGKHMH 192 (568)
T ss_pred ecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecCC----cEEEEEECC----C-CCEEEEEecCCEEE
Confidence 999999988 99976 56899999999999887653 22222 344599999 6 66777777788899
Q ss_pred hhccc----ccccCCCCcceeEEEeeeccceecCCCCCCCceeeecCCCeEEeecCCC----eEEEEEccc-cceeeeee
Q 000725 1171 QHNCM----SRDCQKNPVRFWRLALLVKNRVILGSPLDPRASAIGASSGLGIIGTNDG----LVYAWELSS-GNKLGILH 1241 (1329)
Q Consensus 1171 ~~Dlr----a~~~~gH~n~~wRLALl~K~siI~Gs~ldpra~afs~SG~~gfaGT~DG----lVYmWDLst-G~kL~tL~ 1241 (1329)
+||+| ..++.+|.+..-..++ ....|++.++++++++.|+ .|++||+.+ ++.+.++.
T Consensus 193 IwD~Rsg~~i~tl~gH~g~~~s~~v--------------~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ 258 (568)
T PTZ00420 193 IIDPRKQEIASSFHIHDGGKNTKNI--------------WIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMS 258 (568)
T ss_pred EEECCCCcEEEEEecccCCceeEEE--------------EeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEE
Confidence 99999 4456677654322111 0135677889999877764 799999995 55565544
Q ss_pred cccCc-eEEEEEecCCCCceEEEecCCCCCCccccCCC
Q 000725 1242 HFKGG-TVSCIATDDSGLQALAVAGDGPDGGRRQRDPR 1278 (1329)
Q Consensus 1242 ~Heg~-rVSCVA~dps~p~~~AsA~d~~d~~~r~~~~~ 1278 (1329)
.+... .+.. .+++.. ++..+.+++|+++|+|+.+
T Consensus 259 ld~~~~~L~p-~~D~~t--g~l~lsGkGD~tIr~~e~~ 293 (568)
T PTZ00420 259 IDNASAPLIP-HYDEST--GLIYLIGKGDGNCRYYQHS 293 (568)
T ss_pred ecCCccceEE-eeeCCC--CCEEEEEECCCeEEEEEcc
Confidence 33321 2322 333222 2334444677777777764
No 61
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.69 E-value=5.1e-16 Score=170.26 Aligned_cols=246 Identities=12% Similarity=0.140 Sum_probs=185.1
Q ss_pred eeeEEEecc-cceeEEEEecCCeEEEecCCCeEEEEeccCcceEEEeeeeecCCCCcccceeEEEecCCCC-CeeEecCC
Q 000725 1003 SVVAKLKTD-DCVQCILVCEPKHLIAVGESGKLHLWEMNSSWSAQVEECIIPINDCIYPCIVEMKRIPKCA-PLVVGHNG 1080 (1329)
Q Consensus 1003 sll~kL~~h-~sV~cIlVcDpnhLVSaSdDGkL~IWDM~SgWsm~tee~Vi~~n~~v~p~I~elKrFpkss-~lIVTgSG 1080 (1329)
.++-.+.+| .++.||+| +.+++||+|.|-+|||+||.+.-.....- -|...|.++|..++.+ +.+|+|+.
T Consensus 34 ~~lF~~~aH~~sitavAV-s~~~~aSGssDetI~IYDm~k~~qlg~ll-------~HagsitaL~F~~~~S~shLlS~sd 105 (362)
T KOG0294|consen 34 KPLFAFSAHAGSITALAV-SGPYVASGSSDETIHIYDMRKRKQLGILL-------SHAGSITALKFYPPLSKSHLLSGSD 105 (362)
T ss_pred eccccccccccceeEEEe-cceeEeccCCCCcEEEEeccchhhhccee-------ccccceEEEEecCCcchhheeeecC
Confidence 456678899 99999886 56799999999999999999977766666 6889999995444432 38899999
Q ss_pred CccEEEEEccccceeeeeccCccceeE--ecccc----ccccccCcceEECcchhhhccccccccccCCCceeecCCCCc
Q 000725 1081 FGEFGIWDISKRVLVSRFSAARASIYQ--FFPIN----LFSWQRNGSVSMDASLELTNTATTSLFSKHSEKSSFCPSVGE 1154 (1329)
Q Consensus 1081 Dgtf~LWDIskg~llqsF~ahs~sV~s--fsP~~----s~S~d~~v~tfd~~s~d~~leatv~~fSgdvn~VsF~P~sGe 1154 (1329)
||.|+|||+.+=.++.+|.+|..-|+- +-|.+ +-.=|+.+++|.+-.+..- -+....-....|.|+| .||
T Consensus 106 DG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a---~v~~L~~~at~v~w~~-~Gd 181 (362)
T KOG0294|consen 106 DGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVA---FVLNLKNKATLVSWSP-QGD 181 (362)
T ss_pred CCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccc---eeeccCCcceeeEEcC-CCC
Confidence 999999999999999999999999988 88988 4445777888877665544 1222222334489998 677
Q ss_pred cceEEEEeeccCccchhhcccccccCCCCcceeEEEeeeccceecCCCCCC--CceeeecCCCeEEeecCCCeEEEEEcc
Q 000725 1155 DSAIWLLVSTISDSDAQHNCMSRDCQKNPVRFWRLALLVKNRVILGSPLDP--RASAIGASSGLGIIGTNDGLVYAWELS 1232 (1329)
Q Consensus 1155 D~AiwLLVST~Sdd~t~~Dlra~~~~gH~n~~wRLALl~K~siI~Gs~ldp--ra~afs~SG~~gfaGT~DGlVYmWDLs 1232 (1329)
-|+ +++..--++++-|.. -+|+..-.| ..++.=.++.+++.|.+|+.|.+||..
T Consensus 182 ~F~---v~~~~~i~i~q~d~A---------------------~v~~~i~~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~d 237 (362)
T KOG0294|consen 182 HFV---VSGRNKIDIYQLDNA---------------------SVFREIENPKRILCATFLDGSELLVGGDNEWISLKDTD 237 (362)
T ss_pred EEE---EEeccEEEEEecccH---------------------hHhhhhhccccceeeeecCCceEEEecCCceEEEeccC
Confidence 654 444433344443332 233333333 345555678999999999999999999
Q ss_pred ccceeeeeecccCceEEEEE-ecCCCCceEEEecCCCCCCccccCCCCCCCCcEEEeeeCCC------cceeecC
Q 000725 1233 SGNKLGILHHFKGGTVSCIA-TDDSGLQALAVAGDGPDGGRRQRDPRHGQNDHVRIWKMDPN------LGCVRNS 1300 (1329)
Q Consensus 1233 tG~kL~tL~~Heg~rVSCVA-~dps~p~~~AsA~d~~d~~~r~~~~~~s~D~~VRiW~~~~~------~~~~~~~ 1300 (1329)
++..+..+.+|++ ||-.|+ +.+-....+++| |.||.|+|||++-+ +-|+-|-
T Consensus 238 s~~~~~~~~AH~~-RVK~i~~~~~~~~~~lvTa---------------SSDG~I~vWd~~~~~k~~~~~l~e~n~ 296 (362)
T KOG0294|consen 238 SDTPLTEFLAHEN-RVKDIASYTNPEHEYLVTA---------------SSDGFIKVWDIDMETKKRPTLLAELNT 296 (362)
T ss_pred CCccceeeecchh-heeeeEEEecCCceEEEEe---------------ccCceEEEEEccccccCCcceeEEeec
Confidence 9999999999999 999999 554445567888 78888888888877 5555554
No 62
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.69 E-value=6.7e-16 Score=165.07 Aligned_cols=236 Identities=11% Similarity=0.127 Sum_probs=187.2
Q ss_pred eEEEecc-cceeEEEEe-cCCeEEEecCCCeEEEEeccCcceEEEeeeeecCCCCcccceeEEEecCCCCCeeEecCCCc
Q 000725 1005 VAKLKTD-DCVQCILVC-EPKHLIAVGESGKLHLWEMNSSWSAQVEECIIPINDCIYPCIVEMKRIPKCAPLVVGHNGFG 1082 (1329)
Q Consensus 1005 l~kL~~h-~sV~cIlVc-DpnhLVSaSdDGkL~IWDM~SgWsm~tee~Vi~~n~~v~p~I~elKrFpkss~lIVTgSGDg 1082 (1329)
+.+|..+ +.|+.|-+. |.||++++|.|++|++|..-.|-.++++. +|++.|+++ ...-+...+.+|+||.
T Consensus 10 ~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYs-------ghG~EVlD~-~~s~Dnskf~s~GgDk 81 (307)
T KOG0316|consen 10 LSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYS-------GHGHEVLDA-ALSSDNSKFASCGGDK 81 (307)
T ss_pred ceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeec-------CCCceeeec-cccccccccccCCCCc
Confidence 3456677 889999999 99999999999999999999999999999 999999999 8888899999999999
Q ss_pred cEEEEEccccceeeeeccCccceeE--ecccc----ccccccCcceEECcchhhhccccccccccCCCceeecCCCCccc
Q 000725 1083 EFGIWDISKRVLVSRFSAARASIYQ--FFPIN----LFSWQRNGSVSMDASLELTNTATTSLFSKHSEKSSFCPSVGEDS 1156 (1329)
Q Consensus 1083 tf~LWDIskg~llqsF~ahs~sV~s--fsP~~----s~S~d~~v~tfd~~s~d~~leatv~~fSgdvn~VsF~P~sGeD~ 1156 (1329)
-+.+|||++|+-+..|-+|.+-|.. |+-.+ ++|+|..++.||-++--.. .+|-+..-.+.|.=- |+
T Consensus 82 ~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~e---PiQildea~D~V~Si-----~v 153 (307)
T KOG0316|consen 82 AVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFE---PIQILDEAKDGVSSI-----DV 153 (307)
T ss_pred eEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCC---ccchhhhhcCceeEE-----Ee
Confidence 9999999999999999999999999 77776 8999999999997664433 222222211222111 11
Q ss_pred -eEEEEeeccCccchhhccc----ccccCCCCcceeEEEeeeccceecCCCCCCCceeeecCCCeEEeecCCCeEEEEEc
Q 000725 1157 -AIWLLVSTISDSDAQHNCM----SRDCQKNPVRFWRLALLVKNRVILGSPLDPRASAIGASSGLGIIGTNDGLVYAWEL 1231 (1329)
Q Consensus 1157 -AiwLLVST~Sdd~t~~Dlr----a~~~~gH~n~~wRLALl~K~siI~Gs~ldpra~afs~SG~~gfaGT~DGlVYmWDL 1231 (1329)
.--|+.++.+...+-||+| ..+|-|||.. .++|+++|+...+|+-|++|++-|-
T Consensus 154 ~~heIvaGS~DGtvRtydiR~G~l~sDy~g~pit---------------------~vs~s~d~nc~La~~l~stlrLlDk 212 (307)
T KOG0316|consen 154 AEHEIVAGSVDGTVRTYDIRKGTLSSDYFGHPIT---------------------SVSFSKDGNCSLASSLDSTLRLLDK 212 (307)
T ss_pred cccEEEeeccCCcEEEEEeecceeehhhcCCcce---------------------eEEecCCCCEEEEeeccceeeeccc
Confidence 2346667777777779999 6677777653 4779999999999999999999999
Q ss_pred cccceeeeeecccCceEEEEEecCCCCceEEEecCCCCCCccccCCCCCCCCcEEEeeeCC
Q 000725 1232 SSGNKLGILHHFKGGTVSCIATDDSGLQALAVAGDGPDGGRRQRDPRHGQNDHVRIWKMDP 1292 (1329)
Q Consensus 1232 stG~kL~tL~~Heg~rVSCVA~dps~p~~~AsA~d~~d~~~r~~~~~~s~D~~VRiW~~~~ 1292 (1329)
.||+-|+...+|+|+. --+.+.=.+++ .-++++ |-||.|-+|+.-.
T Consensus 213 ~tGklL~sYkGhkn~e-ykldc~l~qsd-thV~sg-------------SEDG~Vy~wdLvd 258 (307)
T KOG0316|consen 213 ETGKLLKSYKGHKNME-YKLDCCLNQSD-THVFSG-------------SEDGKVYFWDLVD 258 (307)
T ss_pred chhHHHHHhcccccce-eeeeeeecccc-eeEEec-------------cCCceEEEEEecc
Confidence 9999999999999952 23333333455 333333 7888888888643
No 63
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.68 E-value=1.5e-15 Score=171.21 Aligned_cols=205 Identities=14% Similarity=0.218 Sum_probs=162.0
Q ss_pred ccceeeecCCCcEEEEecCccCccccCCCccccccccccccCCCCcEEEEEecCcc-----eeeeEEEecc-cceeEEEE
Q 000725 946 ERSCALFTPDGQYLVLLDSMKTPYCREGRSDCLCSTCTSHRLDENAVKIVKVKPGY-----VSVVAKLKTD-DCVQCILV 1019 (1329)
Q Consensus 946 ersglqFTPDGQ~LvLlgsik~p~CR~~~~dC~Cs~C~~s~seDNtVKIv~V~~G~-----vsll~kL~~h-~sV~cIlV 1019 (1329)
|-.||.|++.-...+ +++++|.+|.+|+++... +.+++.+.+| +.|.+|.+
T Consensus 179 eg~glsWn~~~~g~L-----------------------ls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~ 235 (422)
T KOG0264|consen 179 EGYGLSWNRQQEGTL-----------------------LSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAW 235 (422)
T ss_pred cccccccccccceeE-----------------------eeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhc
Confidence 577889977654433 289999999999987644 4688999999 99999999
Q ss_pred e--cCCeEEEecCCCeEEEEeccCcceEEEeeeeecCCCCcccceeEEEecCC-CCCeeEecCCCccEEEEEccccce-e
Q 000725 1020 C--EPKHLIAVGESGKLHLWEMNSSWSAQVEECIIPINDCIYPCIVEMKRIPK-CAPLVVGHNGFGEFGIWDISKRVL-V 1095 (1329)
Q Consensus 1020 c--DpnhLVSaSdDGkL~IWDM~SgWsm~tee~Vi~~n~~v~p~I~elKrFpk-ss~lIVTgSGDgtf~LWDIskg~l-l 1095 (1329)
. +..-+.||++|++|.|||..+ |.-..- -.-+.|...++++ +|++ ++.+|+|||.|+|++|||++.-+. +
T Consensus 236 h~~h~~lF~sv~dd~~L~iwD~R~-~~~~~~----~~~~ah~~~vn~~-~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~l 309 (422)
T KOG0264|consen 236 HPLHEDLFGSVGDDGKLMIWDTRS-NTSKPS----HSVKAHSAEVNCV-AFNPFNEFILATGSADKTVALWDLRNLNKPL 309 (422)
T ss_pred cccchhhheeecCCCeEEEEEcCC-CCCCCc----ccccccCCceeEE-EeCCCCCceEEeccCCCcEEEeechhcccCc
Confidence 9 999999999999999999997 521111 1223588899999 8876 467889999999999999988665 8
Q ss_pred eeeccCccceeEeccccccccccCcceEECcchhhhccccccccccCCCceeecCCCCccceEEEEeeccCccchhhccc
Q 000725 1096 SRFSAARASIYQFFPINLFSWQRNGSVSMDASLELTNTATTSLFSKHSEKSSFCPSVGEDSAIWLLVSTISDSDAQHNCM 1175 (1329)
Q Consensus 1096 qsF~ahs~sV~sfsP~~s~S~d~~v~tfd~~s~d~~leatv~~fSgdvn~VsF~P~sGeD~AiwLLVST~Sdd~t~~Dlr 1175 (1329)
-+|++|.+.|++ |.|+| ..+
T Consensus 310 h~~e~H~dev~~--------------------------------------V~WSP--h~e-------------------- 329 (422)
T KOG0264|consen 310 HTFEGHEDEVFQ--------------------------------------VEWSP--HNE-------------------- 329 (422)
T ss_pred eeccCCCcceEE--------------------------------------EEeCC--CCC--------------------
Confidence 999999998776 44555 111
Q ss_pred ccccCCCCcceeEEEeeeccceecCCCCCCCceeeecCCCeEEeecCCCeEEEEEccccceeee-------------e-e
Q 000725 1176 SRDCQKNPVRFWRLALLVKNRVILGSPLDPRASAIGASSGLGIIGTNDGLVYAWELSSGNKLGI-------------L-H 1241 (1329)
Q Consensus 1176 a~~~~gH~n~~wRLALl~K~siI~Gs~ldpra~afs~SG~~gfaGT~DGlVYmWDLstG~kL~t-------------L-~ 1241 (1329)
..+++++.|++|.|||+++=-.-++ . -
T Consensus 330 ---------------------------------------tvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~Hg 370 (422)
T KOG0264|consen 330 ---------------------------------------TVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHG 370 (422)
T ss_pred ---------------------------------------ceeEecccCCcEEEEeccccccccChhhhccCCcceeEEec
Confidence 1233455889999999987544432 1 3
Q ss_pred cccCceEEEEEecCCCCceEEEecCCCCCCccccCCCCCCCCcEEEeeeCCCc
Q 000725 1242 HFKGGTVSCIATDDSGLQALAVAGDGPDGGRRQRDPRHGQNDHVRIWKMDPNL 1294 (1329)
Q Consensus 1242 ~Heg~rVSCVA~dps~p~~~AsA~d~~d~~~r~~~~~~s~D~~VRiW~~~~~~ 1294 (1329)
||.. .|+-+.-+|..|-+||++ +-|+.+.||+|..++
T Consensus 371 GH~~-kV~DfsWnp~ePW~I~Sv---------------aeDN~LqIW~~s~~i 407 (422)
T KOG0264|consen 371 GHTA-KVSDFSWNPNEPWTIASV---------------AEDNILQIWQMAENI 407 (422)
T ss_pred Cccc-ccccccCCCCCCeEEEEe---------------cCCceEEEeeccccc
Confidence 8999 899999999999999999 789999999998764
No 64
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.67 E-value=1.8e-15 Score=165.46 Aligned_cols=265 Identities=19% Similarity=0.236 Sum_probs=207.7
Q ss_pred ccceeeecCCCcEEEEecCccCccccCCCccccccccccccCCCCcEEEEEecCcceeeeEEEecccceeEEEEecCCeE
Q 000725 946 ERSCALFTPDGQYLVLLDSMKTPYCREGRSDCLCSTCTSHRLDENAVKIVKVKPGYVSVVAKLKTDDCVQCILVCEPKHL 1025 (1329)
Q Consensus 946 ersglqFTPDGQ~LvLlgsik~p~CR~~~~dC~Cs~C~~s~seDNtVKIv~V~~G~vsll~kL~~h~sV~cIlVcDpnhL 1025 (1329)
..|.|+|+|.+++|+ ..|=|++|++|+|..- +++.+|..-..+.|-++.|..++
T Consensus 15 ~IS~v~f~~~~~~LL------------------------vssWDgslrlYdv~~~--~l~~~~~~~~plL~c~F~d~~~~ 68 (323)
T KOG1036|consen 15 GISSVKFSPSSSDLL------------------------VSSWDGSLRLYDVPAN--SLKLKFKHGAPLLDCAFADESTI 68 (323)
T ss_pred ceeeEEEcCcCCcEE------------------------EEeccCcEEEEeccch--hhhhheecCCceeeeeccCCceE
Confidence 478999999999999 7889999999999985 79999998899999999999999
Q ss_pred EEecCCCeEEEEeccCcceEEEeeeeecCCCCcccceeEEEecCCCCCeeEecCCCccEEEEEccccceeeeeccCccce
Q 000725 1026 IAVGESGKLHLWEMNSSWSAQVEECIIPINDCIYPCIVEMKRIPKCAPLVVGHNGFGEFGIWDISKRVLVSRFSAARASI 1105 (1329)
Q Consensus 1026 VSaSdDGkL~IWDM~SgWsm~tee~Vi~~n~~v~p~I~elKrFpkss~lIVTgSGDgtf~LWDIskg~llqsF~ahs~sV 1105 (1329)
++++-||+|...|++++-.-..-- |.-.|.++ .+..-...||+||-|++|++||......+-+|.... .|
T Consensus 69 ~~G~~dg~vr~~Dln~~~~~~igt--------h~~~i~ci-~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~k-kV 138 (323)
T KOG1036|consen 69 VTGGLDGQVRRYDLNTGNEDQIGT--------HDEGIRCI-EYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGK-KV 138 (323)
T ss_pred EEeccCceEEEEEecCCcceeecc--------CCCceEEE-EeeccCCeEEEcccCccEEEEeccccccccccccCc-eE
Confidence 999999999999999965433322 55566666 555668899999999999999999888888888776 88
Q ss_pred eEecccc----ccccccCcceEECcchhhhc---c-ccccccccCCCceeecCCCCccceEEEEeeccCccchh--hccc
Q 000725 1106 YQFFPIN----LFSWQRNGSVSMDASLELTN---T-ATTSLFSKHSEKSSFCPSVGEDSAIWLLVSTISDSDAQ--HNCM 1175 (1329)
Q Consensus 1106 ~sfsP~~----s~S~d~~v~tfd~~s~d~~l---e-atv~~fSgdvn~VsF~P~sGeD~AiwLLVST~Sdd~t~--~Dlr 1175 (1329)
++..=.+ -+-.|+.+.+||++..+.-. + .-+..... |++.| .++.++ +|+.+.-.+- +|-.
T Consensus 139 y~~~v~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~----v~~~p-n~eGy~----~sSieGRVavE~~d~s 209 (323)
T KOG1036|consen 139 YCMDVSGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRC----VALVP-NGEGYV----VSSIEGRVAVEYFDDS 209 (323)
T ss_pred EEEeccCCEEEEeecCceEEEEEcccccchhhhccccceeEEEE----EEEec-CCCceE----EEeecceEEEEccCCc
Confidence 8844333 45678999999999998872 2 23333444 99999 888866 6666554444 3433
Q ss_pred ----ccccCCCCcceeEEEeeeccc-eecCCCCCCCceeeecCCCeEEeecCCCeEEEEEccccceeeeeecccCceEEE
Q 000725 1176 ----SRDCQKNPVRFWRLALLVKNR-VILGSPLDPRASAIGASSGLGIIGTNDGLVYAWELSSGNKLGILHHFKGGTVSC 1250 (1329)
Q Consensus 1176 ----a~~~~gH~n~~wRLALl~K~s-iI~Gs~ldpra~afs~SG~~gfaGT~DGlVYmWDLstG~kL~tL~~Heg~rVSC 1250 (1329)
.+.| .=+..|+.. |+. +|--. ++.+|+|--+.+++|..||.|.+||+...+|+.-|+.+++ .|+.
T Consensus 210 ~~~~skky---aFkCHr~~~--~~~~~~yPV----Nai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~-SI~s 279 (323)
T KOG1036|consen 210 EEAQSKKY---AFKCHRLSE--KDTEIIYPV----NAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYET-SISS 279 (323)
T ss_pred hHHhhhce---eEEeeeccc--CCceEEEEe----ceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCC-ceEE
Confidence 1111 112223221 332 33334 7899999999999999999999999999999999999988 8999
Q ss_pred EEecCCCCceEEEecC
Q 000725 1251 IATDDSGLQALAVAGD 1266 (1329)
Q Consensus 1251 VA~dps~p~~~AsA~d 1266 (1329)
++++.++.. +|+|++
T Consensus 280 lsfs~dG~~-LAia~s 294 (323)
T KOG1036|consen 280 LSFSMDGSL-LAIASS 294 (323)
T ss_pred EEeccCCCe-EEEEec
Confidence 999988887 999953
No 65
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=4.1e-15 Score=161.04 Aligned_cols=232 Identities=18% Similarity=0.188 Sum_probs=179.9
Q ss_pred ceeeecCCCcEEEEecCccCccccCCCccccccccccccCCCCcEEEEEecCcceeeeEEEecc-cceeEEEEe-cCCeE
Q 000725 948 SCALFTPDGQYLVLLDSMKTPYCREGRSDCLCSTCTSHRLDENAVKIVKVKPGYVSVVAKLKTD-DCVQCILVC-EPKHL 1025 (1329)
Q Consensus 948 sglqFTPDGQ~LvLlgsik~p~CR~~~~dC~Cs~C~~s~seDNtVKIv~V~~G~vsll~kL~~h-~sV~cIlVc-DpnhL 1025 (1329)
-.++|+|.||||+ ++|=|-|+-||+=..|--+++++|+|| .+|.||+++ +.++|
T Consensus 65 RsvAwsp~g~~La------------------------~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~L 120 (312)
T KOG0645|consen 65 RSVAWSPHGRYLA------------------------SASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYL 120 (312)
T ss_pred eeeeecCCCcEEE------------------------EeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEE
Confidence 3689999999999 999999999999999999999999999 999999999 99999
Q ss_pred EEecCCCeEEEEeccCcceEEEeeeeecCCCCcccceeEEEecCCCCCeeEecCCCccEEEEEcc---ccceeeeeccCc
Q 000725 1026 IAVGESGKLHLWEMNSSWSAQVEECIIPINDCIYPCIVEMKRIPKCAPLVVGHNGFGEFGIWDIS---KRVLVSRFSAAR 1102 (1329)
Q Consensus 1026 VSaSdDGkL~IWDM~SgWsm~tee~Vi~~n~~v~p~I~elKrFpkss~lIVTgSGDgtf~LWDIs---kg~llqsF~ahs 1102 (1329)
+++|-|+.+-||....+--.-|.- --..|.+-+--+ .+.+.--+++++|||.||++|+=. .=.|+|++.+|.
T Consensus 121 ATCSRDKSVWiWe~deddEfec~a----VL~~HtqDVK~V-~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~ 195 (312)
T KOG0645|consen 121 ATCSRDKSVWIWEIDEDDEFECIA----VLQEHTQDVKHV-IWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHE 195 (312)
T ss_pred EEeeCCCeEEEEEecCCCcEEEEe----eeccccccccEE-EEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCcc
Confidence 999999999999988543222222 111355555455 899999999999999999999887 336899999999
Q ss_pred cceeE--ecccc----ccccccCcceEECc-chhhh--c-cccccccccCCCceeecCCCCccceEEEEeeccCccchhh
Q 000725 1103 ASIYQ--FFPIN----LFSWQRNGSVSMDA-SLELT--N-TATTSLFSKHSEKSSFCPSVGEDSAIWLLVSTISDSDAQH 1172 (1329)
Q Consensus 1103 ~sV~s--fsP~~----s~S~d~~v~tfd~~-s~d~~--l-eatv~~fSgdvn~VsF~P~sGeD~AiwLLVST~Sdd~t~~ 1172 (1329)
++|++ |.|+| +++-|+++++|-.- +...+ + .-.+.|-.+ + .- +.|.|-|+-|+..+.+-++..|
T Consensus 196 ~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~~~~~sr~~Y~v~W~~~----~-Ia-S~ggD~~i~lf~~s~~~d~p~~ 269 (312)
T KOG0645|consen 196 NTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDLSGMHSRALYDVPWDNG----V-IA-SGGGDDAIRLFKESDSPDEPSW 269 (312)
T ss_pred ceEEEEEecCCCceEEEecCCcceEeeeeccCcchhcccceEeeeeccc----c-eE-eccCCCEEEEEEecCCCCCchH
Confidence 99999 89999 99999999999843 22222 3 233444422 2 11 2344559999998866677778
Q ss_pred cccccccCCCCcceeEEEeeeccceecCCCCCCCceeeec-CCCeEEeecCCCeEEEEEccc
Q 000725 1173 NCMSRDCQKNPVRFWRLALLVKNRVILGSPLDPRASAIGA-SSGLGIIGTNDGLVYAWELSS 1233 (1329)
Q Consensus 1173 Dlra~~~~gH~n~~wRLALl~K~siI~Gs~ldpra~afs~-SG~~gfaGT~DGlVYmWDLst 1233 (1329)
.+.++.-.-|-+ |-+.+.-.+ -++.+++|+.||.|++|+|.+
T Consensus 270 ~l~~~~~~aHe~-------------------dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~~ 312 (312)
T KOG0645|consen 270 NLLAKKEGAHEV-------------------DVNSVQWNPKVSNRLASGGDDGIVNFWELEI 312 (312)
T ss_pred HHHHhhhccccc-------------------ccceEEEcCCCCCceeecCCCceEEEEEecC
Confidence 888765344433 224456666 378899999999999999863
No 66
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.67 E-value=2.8e-13 Score=131.74 Aligned_cols=260 Identities=15% Similarity=0.223 Sum_probs=183.3
Q ss_pred ccCC-CCcEEEEEecC-cceeeeEEEecc-cceeEEEEe-cCCeEEEecC-CCeEEEEeccCcceEEEeeeeecCCCCcc
Q 000725 985 HRLD-ENAVKIVKVKP-GYVSVVAKLKTD-DCVQCILVC-EPKHLIAVGE-SGKLHLWEMNSSWSAQVEECIIPINDCIY 1059 (1329)
Q Consensus 985 s~se-DNtVKIv~V~~-G~vsll~kL~~h-~sV~cIlVc-DpnhLVSaSd-DGkL~IWDM~SgWsm~tee~Vi~~n~~v~ 1059 (1329)
.++. |+++++|++.. +. .+..+.+| ..|.++.++ +.+++++++. |+.+++|++.++....+.. +|.
T Consensus 128 ~~~~~d~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~ 198 (466)
T COG2319 128 ASSSLDGTVKLWDLSTPGK--LIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLA-------GHT 198 (466)
T ss_pred ccCCCCccEEEEEecCCCe--EEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeec-------cCC
Confidence 4344 89999999998 55 88999999 899999999 7778999986 9999999999977777666 688
Q ss_pred cceeEEEecCCCCC-eeEecCCCccEEEEEccccceee-eeccCccc-eeEecccc----ccccccCcceEECcchhhh-
Q 000725 1060 PCIVEMKRIPKCAP-LVVGHNGFGEFGIWDISKRVLVS-RFSAARAS-IYQFFPIN----LFSWQRNGSVSMDASLELT- 1131 (1329)
Q Consensus 1060 p~I~elKrFpkss~-lIVTgSGDgtf~LWDIskg~llq-sF~ahs~s-V~sfsP~~----s~S~d~~v~tfd~~s~d~~- 1131 (1329)
..+..+ ++.+.+. .+++++.|+++.+||+..+..+. .+.+|... +..|.|++ +++-++.+++|+.......
T Consensus 199 ~~v~~~-~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 277 (466)
T COG2319 199 DPVSSL-AFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLL 277 (466)
T ss_pred CceEEE-EEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcceeEeECCCCCEEEEecCCCcEEEeeecCCCcEE
Confidence 889998 6666676 77777999999999999999999 79999998 44599998 7899999999999877763
Q ss_pred --ccccccccccCCCceeecCCCCccceEEEEeeccCccchhhcccccc----c--CCCCcceeEEEeeeccceecCCCC
Q 000725 1132 --NTATTSLFSKHSEKSSFCPSVGEDSAIWLLVSTISDSDAQHNCMSRD----C--QKNPVRFWRLALLVKNRVILGSPL 1203 (1329)
Q Consensus 1132 --leatv~~fSgdvn~VsF~P~sGeD~AiwLLVST~Sdd~t~~Dlra~~----~--~gH~n~~wRLALl~K~siI~Gs~l 1203 (1329)
+..+.. .+..+.|.| + ...+++++.+.....||..... . ..|.+....
T Consensus 278 ~~~~~~~~----~v~~~~~~~----~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------- 333 (466)
T COG2319 278 RTLSGHSS----SVLSVAFSP----D-GKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSS--------------- 333 (466)
T ss_pred EEEecCCc----cEEEEEECC----C-CCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEE---------------
Confidence 212233 344488998 4 2333334444445668777332 1 122222222
Q ss_pred CCCceeeecCCCeEEee-cCCCeEEEEEccccceeeeeecccCceEEEEEecCCCCceEEEecCCCCCCccccCCCCCCC
Q 000725 1204 DPRASAIGASSGLGIIG-TNDGLVYAWELSSGNKLGILHHFKGGTVSCIATDDSGLQALAVAGDGPDGGRRQRDPRHGQN 1282 (1329)
Q Consensus 1204 dpra~afs~SG~~gfaG-T~DGlVYmWDLstG~kL~tL~~Heg~rVSCVA~dps~p~~~AsA~d~~d~~~r~~~~~~s~D 1282 (1329)
..+.+++-.++.+ ..|+.+++|++...........+.. +..++..+ . .-+.. .. +.+
T Consensus 334 ----~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~-~~~~~-~~-------------~~~ 391 (466)
T COG2319 334 ----LSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSN--VLSVSFSP-D-GRVVS-SG-------------STD 391 (466)
T ss_pred ----EEECCCCCEEEEeecCCCcEEeeecCCCceeEEecCCce--EEEEEECC-C-CCEEE-Ee-------------cCC
Confidence 2332222344444 7899999999999994444444433 88889987 5 32332 22 556
Q ss_pred CcEEEeeeCCCcceeecC
Q 000725 1283 DHVRIWKMDPNLGCVRNS 1300 (1329)
Q Consensus 1283 ~~VRiW~~~~~~~~~~~~ 1300 (1329)
+.+++|+...........
T Consensus 392 ~~~~~~~~~~~~~~~~~~ 409 (466)
T COG2319 392 GTVRLWDLSTGSLLRNLD 409 (466)
T ss_pred CceEEEecccCeeeeecc
Confidence 666777666655544433
No 67
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.67 E-value=2.3e-15 Score=170.83 Aligned_cols=279 Identities=14% Similarity=0.105 Sum_probs=204.1
Q ss_pred ccceeeecCCCc-EEEEecCccCccccCCCccccccccccccCCCCcEEEEEecC------cceeeeEEE-------ecc
Q 000725 946 ERSCALFTPDGQ-YLVLLDSMKTPYCREGRSDCLCSTCTSHRLDENAVKIVKVKP------GYVSVVAKL-------KTD 1011 (1329)
Q Consensus 946 ersglqFTPDGQ-~LvLlgsik~p~CR~~~~dC~Cs~C~~s~seDNtVKIv~V~~------G~vsll~kL-------~~h 1011 (1329)
|-..-+|+|--+ .|+ +++.|-+-|||++.. -...+.+.+ ...
T Consensus 180 ~V~~~~WnP~~~~lla------------------------sg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~n 235 (524)
T KOG0273|consen 180 EVFICAWNPLRDGLLA------------------------SGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSN 235 (524)
T ss_pred ceEEEecCchhhhhhh------------------------ccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCcc
Confidence 446778899888 667 899999999999775 112333333 223
Q ss_pred cceeEEEEe-cCCeEEEecCCCeEEEEeccCcceEEEeeeeecCCCCcccceeEEEecCCCCCeeEecCCCccEEEEEcc
Q 000725 1012 DCVQCILVC-EPKHLIAVGESGKLHLWEMNSSWSAQVEECIIPINDCIYPCIVEMKRIPKCAPLVVGHNGFGEFGIWDIS 1090 (1329)
Q Consensus 1012 ~sV~cIlVc-DpnhLVSaSdDGkL~IWDM~SgWsm~tee~Vi~~n~~v~p~I~elKrFpkss~lIVTgSGDgtf~LWDIs 1090 (1329)
-.|-|+.|. |.+.||+++.||.++||+.+. =.+.++ .+|-..|+.| +.++.+.+|++++-|+|+-|||.-
T Consensus 236 kdVT~L~Wn~~G~~LatG~~~G~~riw~~~G-~l~~tl-------~~HkgPI~sl-KWnk~G~yilS~~vD~ttilwd~~ 306 (524)
T KOG0273|consen 236 KDVTSLDWNNDGTLLATGSEDGEARIWNKDG-NLISTL-------GQHKGPIFSL-KWNKKGTYILSGGVDGTTILWDAH 306 (524)
T ss_pred CCcceEEecCCCCeEEEeecCcEEEEEecCc-hhhhhh-------hccCCceEEE-EEcCCCCEEEeccCCccEEEEecc
Confidence 679999999 999999999999999999664 233334 4899999999 999999999999999999999999
Q ss_pred ccceeeeeccCccceeE---ecccc--ccccccCcceEECcchhhhccccccccccCCCceeecCCCCccceEEEEeecc
Q 000725 1091 KRVLVSRFSAARASIYQ---FFPIN--LFSWQRNGSVSMDASLELTNTATTSLFSKHSEKSSFCPSVGEDSAIWLLVSTI 1165 (1329)
Q Consensus 1091 kg~llqsF~ahs~sV~s---fsP~~--s~S~d~~v~tfd~~s~d~~leatv~~fSgdvn~VsF~P~sGeD~AiwLLVST~ 1165 (1329)
+|+..|-|+-|+..-.- ..-+. +++-|+-|+++-++ ++.-..|.....+.++-+.|-| .+..|+..+.
T Consensus 307 ~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~--~~~P~~t~~GH~g~V~alk~n~-----tg~LLaS~Sd 379 (524)
T KOG0273|consen 307 TGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVG--EDRPVKTFIGHHGEVNALKWNP-----TGSLLASCSD 379 (524)
T ss_pred CceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEec--CCCcceeeecccCceEEEEECC-----CCceEEEecC
Confidence 99999999999987221 22222 56666666666543 2221122222333555599998 3666775555
Q ss_pred Cccchhhccc----ccccCCCCcceeEEEeeeccceecCCCCCCCceeeecCCCeEEeecCCCeEEEEEccccceeeeee
Q 000725 1166 SDSDAQHNCM----SRDCQKNPVRFWRLALLVKNRVILGSPLDPRASAIGASSGLGIIGTNDGLVYAWELSSGNKLGILH 1241 (1329)
Q Consensus 1166 Sdd~t~~Dlr----a~~~~gH~n~~wRLALl~K~siI~Gs~ldpra~afs~SG~~gfaGT~DGlVYmWDLstG~kL~tL~ 1241 (1329)
+-+.++|.+. -++++.|....|-+.- +|-+|-. --.-.|-.+++.+.|++|.|||+-.|..+++|-
T Consensus 380 D~TlkiWs~~~~~~~~~l~~Hskei~t~~w---------sp~g~v~-~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~ 449 (524)
T KOG0273|consen 380 DGTLKIWSMGQSNSVHDLQAHSKEIYTIKW---------SPTGPVT-SNPNMNLMLASASFDSTVKLWDVESGVPIHTLM 449 (524)
T ss_pred CCeeEeeecCCCcchhhhhhhccceeeEee---------cCCCCcc-CCCcCCceEEEeecCCeEEEEEccCCceeEeec
Confidence 5556669877 5677889988887442 3333321 123456678888999999999999999999999
Q ss_pred cccCceEEEEEecCCCCceEEEecCCCCCCccccCCC
Q 000725 1242 HFKGGTVSCIATDDSGLQALAVAGDGPDGGRRQRDPR 1278 (1329)
Q Consensus 1242 ~Heg~rVSCVA~dps~p~~~AsA~d~~d~~~r~~~~~ 1278 (1329)
.|+. -|..||++|.+.. +|++ +-||.+-||.++
T Consensus 450 kH~~-pVysvafS~~g~y-lAsG--s~dg~V~iws~~ 482 (524)
T KOG0273|consen 450 KHQE-PVYSVAFSPNGRY-LASG--SLDGCVHIWSTK 482 (524)
T ss_pred cCCC-ceEEEEecCCCcE-EEec--CCCCeeEecccc
Confidence 9999 8999999977776 5555 455555555553
No 68
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.66 E-value=3e-16 Score=175.94 Aligned_cols=227 Identities=12% Similarity=0.105 Sum_probs=178.8
Q ss_pred cceeeecCCCcEEEEecCccCccccCCCccccccccccccCCCCcEEEEEecCcceeeeEEEecc-cceeEEEEe-cCCe
Q 000725 947 RSCALFTPDGQYLVLLDSMKTPYCREGRSDCLCSTCTSHRLDENAVKIVKVKPGYVSVVAKLKTD-DCVQCILVC-EPKH 1024 (1329)
Q Consensus 947 rsglqFTPDGQ~LvLlgsik~p~CR~~~~dC~Cs~C~~s~seDNtVKIv~V~~G~vsll~kL~~h-~sV~cIlVc-Dpnh 1024 (1329)
...+.|.+||.+++ ..+-|++++||+|..+. +++||.|| +.|.++.+- ....
T Consensus 222 it~~d~d~~~~~~i------------------------Aas~d~~~r~Wnvd~~r--~~~TLsGHtdkVt~ak~~~~~~~ 275 (459)
T KOG0288|consen 222 ITSIDFDSDNKHVI------------------------AASNDKNLRLWNVDSLR--LRHTLSGHTDKVTAAKFKLSHSR 275 (459)
T ss_pred cceeeecCCCceEE------------------------eecCCCceeeeeccchh--hhhhhcccccceeeehhhccccc
Confidence 35789999999999 89999999999999998 99999999 999999999 5555
Q ss_pred EEEecCCCeEEEEeccCcceEEEeeeeecCCCCcccceeEEEecCCCCCeeEecCCCccEEEEEccccceeeeeccCccc
Q 000725 1025 LIAVGESGKLHLWEMNSSWSAQVEECIIPINDCIYPCIVEMKRIPKCAPLVVGHNGFGEFGIWDISKRVLVSRFSAARAS 1104 (1329)
Q Consensus 1025 LVSaSdDGkL~IWDM~SgWsm~tee~Vi~~n~~v~p~I~elKrFpkss~lIVTgSGDgtf~LWDIskg~llqsF~ahs~s 1104 (1329)
+||++-|++|++|||..+.+.++..++-..|+ + ... .+.+++|..|++++.||+.+..++++..+++ -
T Consensus 276 vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnD--------I-~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~ 343 (459)
T KOG0288|consen 276 VVSGSADRTIKLWDLQKAYCSKTVLPGSQCND--------I-VCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-R 343 (459)
T ss_pred eeeccccchhhhhhhhhhheeccccccccccc--------e-Eec--ceeeeecccccceEEEeccCCceeeEeecCc-c
Confidence 99999999999999999777777663334444 2 111 7889999999999999999999999999998 8
Q ss_pred eeE--ecccc----ccccccCcceEECcchhhh--ccccccccccCCCceeecCCCCccceEEEEeeccCccchhhcccc
Q 000725 1105 IYQ--FFPIN----LFSWQRNGSVSMDASLELT--NTATTSLFSKHSEKSSFCPSVGEDSAIWLLVSTISDSDAQHNCMS 1176 (1329)
Q Consensus 1105 V~s--fsP~~----s~S~d~~v~tfd~~s~d~~--leatv~~fSgdvn~VsF~P~sGeD~AiwLLVST~Sdd~t~~Dlra 1176 (1329)
|.+ +++++ +|+=|.++.++|.++-+-. .-|..---..|.+.|.|+| | +-.++.|+.+...++|++-.
T Consensus 344 vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSp----d-~~YvaAGS~dgsv~iW~v~t 418 (459)
T KOG0288|consen 344 VTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSP----D-GSYVAAGSADGSVYIWSVFT 418 (459)
T ss_pred eeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECC----C-CceeeeccCCCcEEEEEccC
Confidence 888 88888 7899999999999887766 1111111222777799999 6 67888999999999999861
Q ss_pred cccCCCCcceeEEEeeeccceecCCCCCCCceeeecCCCeEEeecCCCeEEEE
Q 000725 1177 RDCQKNPVRFWRLALLVKNRVILGSPLDPRASAIGASSGLGIIGTNDGLVYAW 1229 (1329)
Q Consensus 1177 ~~~~gH~n~~wRLALl~K~siI~Gs~ldpra~afs~SG~~gfaGT~DGlVYmW 1229 (1329)
-.+ .. .|.+ -+++-.-.++++.++|.++++.+.++.|-+|
T Consensus 419 gKl----E~--~l~~-------s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 419 GKL----EK--VLSL-------STSNAAITSLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred ceE----EE--Eecc-------CCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence 110 00 0000 0010001347889999999999999999999
No 69
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.65 E-value=1.7e-15 Score=171.64 Aligned_cols=233 Identities=16% Similarity=0.186 Sum_probs=173.2
Q ss_pred cceeeecCCCcEEEEecCccCccccCCCccccccccccccCCCCcEEEEEecCcceeeeEEEecc-cceeEEEEe-cCCe
Q 000725 947 RSCALFTPDGQYLVLLDSMKTPYCREGRSDCLCSTCTSHRLDENAVKIVKVKPGYVSVVAKLKTD-DCVQCILVC-EPKH 1024 (1329)
Q Consensus 947 rsglqFTPDGQ~LvLlgsik~p~CR~~~~dC~Cs~C~~s~seDNtVKIv~V~~G~vsll~kL~~h-~sV~cIlVc-Dpnh 1024 (1329)
-..|+-+|+|-||+ -+...+-|-||.+++|. ++..|.+| -+|.|+.++ |.-|
T Consensus 84 v~al~s~n~G~~l~------------------------ag~i~g~lYlWelssG~--LL~v~~aHYQ~ITcL~fs~dgs~ 137 (476)
T KOG0646|consen 84 VHALASSNLGYFLL------------------------AGTISGNLYLWELSSGI--LLNVLSAHYQSITCLKFSDDGSH 137 (476)
T ss_pred eeeeecCCCceEEE------------------------eecccCcEEEEEecccc--HHHHHHhhccceeEEEEeCCCcE
Confidence 46789999999999 66689999999999999 99999999 999999999 9999
Q ss_pred EEEecCCCeEEEEeccCcceEEEeeeeecCCC----------CcccceeEEE-ecCCCCCeeEecCCCccEEEEEccccc
Q 000725 1025 LIAVGESGKLHLWEMNSSWSAQVEECIIPIND----------CIYPCIVEMK-RIPKCAPLVVGHNGFGEFGIWDISKRV 1093 (1329)
Q Consensus 1025 LVSaSdDGkL~IWDM~SgWsm~tee~Vi~~n~----------~v~p~I~elK-rFpkss~lIVTgSGDgtf~LWDIskg~ 1093 (1329)
|+|+|.||.|++|++-+ .|..+++ .|.-.|-+++ -+-.+...|+|.|-|-||++||++.|.
T Consensus 138 iiTgskDg~V~vW~l~~--------lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~ 209 (476)
T KOG0646|consen 138 IITGSKDGAVLVWLLTD--------LVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGV 209 (476)
T ss_pred EEecCCCccEEEEEEEe--------ecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccce
Confidence 99999999999999433 1111121 2666777775 444478999999999999999999999
Q ss_pred eeeeeccCccceeE--eccccccccccCcceEECcchhhh----ccccccccccCCCceeecCCCCccceEEEEeeccCc
Q 000725 1094 LVSRFSAARASIYQ--FFPINLFSWQRNGSVSMDASLELT----NTATTSLFSKHSEKSSFCPSVGEDSAIWLLVSTISD 1167 (1329)
Q Consensus 1094 llqsF~ahs~sV~s--fsP~~s~S~d~~v~tfd~~s~d~~----leatv~~fSgdvn~VsF~P~sGeD~AiwLLVST~Sd 1167 (1329)
++.+|.-+... .+ +-|-+ +.+-.|+-|-. +.-.-.+++.+++.-.+++ +...+
T Consensus 210 LLlti~fp~si-~av~lDpae--------~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~---~~t~~--------- 268 (476)
T KOG0646|consen 210 LLLTITFPSSI-KAVALDPAE--------RVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHE---ENTQI--------- 268 (476)
T ss_pred eeEEEecCCcc-eeEEEcccc--------cEEEecCCcceEEeeehhcCCccccccccccccc---cccee---------
Confidence 99999877543 33 66666 22222332222 1111222444555444554 12122
Q ss_pred cchhhcccccccCCCCc--ceeEEEeeeccceecCCCCCCCceeeecCCCeEEeecCCCeEEEEEccccceeeeeecccC
Q 000725 1168 SDAQHNCMSRDCQKNPV--RFWRLALLVKNRVILGSPLDPRASAIGASSGLGIIGTNDGLVYAWELSSGNKLGILHHFKG 1245 (1329)
Q Consensus 1168 d~t~~Dlra~~~~gH~n--~~wRLALl~K~siI~Gs~ldpra~afs~SG~~gfaGT~DGlVYmWDLstG~kL~tL~~Heg 1245 (1329)
+-+.||.+ .+-| .+++.+|.++++|++||.|-+||+.+.+++-+|..-.|
T Consensus 269 ---------~~~~Gh~~~~~ITc-------------------Lais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kg 320 (476)
T KOG0646|consen 269 ---------NVLVGHENESAITC-------------------LAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKG 320 (476)
T ss_pred ---------eeeccccCCcceeE-------------------EEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhcc
Confidence 23456666 5555 55799999999999999999999999999999998777
Q ss_pred ceEEEEEecCCCCceEEEe
Q 000725 1246 GTVSCIATDDSGLQALAVA 1264 (1329)
Q Consensus 1246 ~rVSCVA~dps~p~~~AsA 1264 (1329)
.|+.+++.|=.+. +.++
T Consensus 321 -pVtnL~i~~~~~~-~~l~ 337 (476)
T KOG0646|consen 321 -PVTNLQINPLERG-IILF 337 (476)
T ss_pred -ccceeEeeccccc-eecc
Confidence 8999999765554 4443
No 70
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=4e-15 Score=171.44 Aligned_cols=231 Identities=15% Similarity=0.077 Sum_probs=189.6
Q ss_pred cccceeeecCCCcEEEEecCccCccccCCCccccccccccccCCCCcEEEEEecCcceeeeEEEec-c-cceeEEEEecC
Q 000725 945 LERSCALFTPDGQYLVLLDSMKTPYCREGRSDCLCSTCTSHRLDENAVKIVKVKPGYVSVVAKLKT-D-DCVQCILVCEP 1022 (1329)
Q Consensus 945 ~ersglqFTPDGQ~LvLlgsik~p~CR~~~~dC~Cs~C~~s~seDNtVKIv~V~~G~vsll~kL~~-h-~sV~cIlVcDp 1022 (1329)
-.-++|.|+|||++|+ .+-.+++|.|||++.-. -+.++.+ | ..|-|+.|. .
T Consensus 218 ~~vtSv~ws~~G~~La------------------------vG~~~g~v~iwD~~~~k--~~~~~~~~h~~rvg~laW~-~ 270 (484)
T KOG0305|consen 218 ELVTSVKWSPDGSHLA------------------------VGTSDGTVQIWDVKEQK--KTRTLRGSHASRVGSLAWN-S 270 (484)
T ss_pred CceEEEEECCCCCEEE------------------------EeecCCeEEEEehhhcc--ccccccCCcCceeEEEecc-C
Confidence 3568999999999999 89999999999999966 8888888 7 999999999 7
Q ss_pred CeEEEecCCCeEEEEeccCcceEEEeeeeecCCCCcccceeEEEecCCCCCeeEecCCCccEEEEEccccceeeeeccCc
Q 000725 1023 KHLIAVGESGKLHLWEMNSSWSAQVEECIIPINDCIYPCIVEMKRIPKCAPLVVGHNGFGEFGIWDISKRVLVSRFSAAR 1102 (1329)
Q Consensus 1023 nhLVSaSdDGkL~IWDM~SgWsm~tee~Vi~~n~~v~p~I~elKrFpkss~lIVTgSGDgtf~LWDIskg~llqsF~ahs 1102 (1329)
..+.+++.||+|.+|||++.=.+.. . -.+|...+-.| ++.+++.+.++|+-|..+.|||...-..+.+|..|.
T Consensus 271 ~~lssGsr~~~I~~~dvR~~~~~~~-~-----~~~H~qeVCgL-kws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~ 343 (484)
T KOG0305|consen 271 SVLSSGSRDGKILNHDVRISQHVVS-T-----LQGHRQEVCGL-KWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHT 343 (484)
T ss_pred ceEEEecCCCcEEEEEEecchhhhh-h-----hhcccceeeee-EECCCCCeeccCCCccceEeccCCCccccEEEeccc
Confidence 7888999999999999887655444 1 23688888889 999999999999999999999998888899999999
Q ss_pred cceeE--eccc-------cccccccCcceEECcchhhhc-cccccccccCCCceeecCCCCccceEEEEeeccCccchhh
Q 000725 1103 ASIYQ--FFPI-------NLFSWQRNGSVSMDASLELTN-TATTSLFSKHSEKSSFCPSVGEDSAIWLLVSTISDSDAQH 1172 (1329)
Q Consensus 1103 ~sV~s--fsP~-------~s~S~d~~v~tfd~~s~d~~l-eatv~~fSgdvn~VsF~P~sGeD~AiwLLVST~Sdd~t~~ 1172 (1329)
+.|-. ++|= |-++-|+.|+.|++..+.+.. ..|..-+.. +.++|. ..
T Consensus 344 aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcs----L~Wsk~-~k------------------ 400 (484)
T KOG0305|consen 344 AAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCS----LIWSKK-YK------------------ 400 (484)
T ss_pred eeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCceee----EEEcCC-CC------------------
Confidence 99988 6664 488999999999999888874 444443444 777771 11
Q ss_pred cccccccCCCCcceeEEEeeeccceecCCCCCCCceeeecCCCeEEeecCCCeEEEEEccccceeeeeecccCceEEEEE
Q 000725 1173 NCMSRDCQKNPVRFWRLALLVKNRVILGSPLDPRASAIGASSGLGIIGTNDGLVYAWELSSGNKLGILHHFKGGTVSCIA 1252 (1329)
Q Consensus 1173 Dlra~~~~gH~n~~wRLALl~K~siI~Gs~ldpra~afs~SG~~gfaGT~DGlVYmWDLstG~kL~tL~~Heg~rVSCVA 1252 (1329)
+|. + --|+.++.|-+|+..+-+++..|.+|+. ||..+|
T Consensus 401 ---------------Ei~-----------------s---------thG~s~n~i~lw~~ps~~~~~~l~gH~~-RVl~la 438 (484)
T KOG0305|consen 401 ---------------ELL-----------------S---------THGYSENQITLWKYPSMKLVAELLGHTS-RVLYLA 438 (484)
T ss_pred ---------------EEE-----------------E---------ecCCCCCcEEEEeccccceeeeecCCcc-eeEEEE
Confidence 222 1 1367788999999999999999999999 999999
Q ss_pred ecCCCCceEEEecCCCCCCccccCC
Q 000725 1253 TDDSGLQALAVAGDGPDGGRRQRDP 1277 (1329)
Q Consensus 1253 ~dps~p~~~AsA~d~~d~~~r~~~~ 1277 (1329)
.+|. |..+++++.|.|||.|.+
T Consensus 439 ~SPd---g~~i~t~a~DETlrfw~~ 460 (484)
T KOG0305|consen 439 LSPD---GETIVTGAADETLRFWNL 460 (484)
T ss_pred ECCC---CCEEEEecccCcEEeccc
Confidence 9955 445555556666666665
No 71
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.64 E-value=2.4e-15 Score=167.14 Aligned_cols=252 Identities=14% Similarity=0.211 Sum_probs=190.2
Q ss_pred ccCCCCcEEEEEecCcceeeeEEEecc-cceeEEEEecCCeEEEecCCCeEEEEeccCcceEEEeeeeecCCCCccccee
Q 000725 985 HRLDENAVKIVKVKPGYVSVVAKLKTD-DCVQCILVCEPKHLIAVGESGKLHLWEMNSSWSAQVEECIIPINDCIYPCIV 1063 (1329)
Q Consensus 985 s~seDNtVKIv~V~~G~vsll~kL~~h-~sV~cIlVcDpnhLVSaSdDGkL~IWDM~SgWsm~tee~Vi~~n~~v~p~I~ 1063 (1329)
+|+-|+.||||+... ..++.+|++| +-|+.|.+.- ..++++|||.+|+.|-|.-- ...+.- -+. + .+
T Consensus 84 SGs~DG~VkiWnlsq--R~~~~~f~AH~G~V~Gi~v~~-~~~~tvgdDKtvK~wk~~~~-p~~til----g~s-~---~~ 151 (433)
T KOG0268|consen 84 SGSCDGEVKIWNLSQ--RECIRTFKAHEGLVRGICVTQ-TSFFTVGDDKTVKQWKIDGP-PLHTIL----GKS-V---YL 151 (433)
T ss_pred ccccCceEEEEehhh--hhhhheeecccCceeeEEecc-cceEEecCCcceeeeeccCC-cceeee----ccc-c---cc
Confidence 789999999999999 5699999999 6899988876 88999999999999997762 111111 111 1 11
Q ss_pred EEEecCCCCCeeEecCCCccEEEEEccccceeeeeccCccceeE--ecccc-----ccccccCcceEECcchhhhc-ccc
Q 000725 1064 EMKRIPKCAPLVVGHNGFGEFGIWDISKRVLVSRFSAARASIYQ--FFPIN-----LFSWQRNGSVSMDASLELTN-TAT 1135 (1329)
Q Consensus 1064 elKrFpkss~lIVTgSGDgtf~LWDIskg~llqsF~ahs~sV~s--fsP~~-----s~S~d~~v~tfd~~s~d~~l-eat 1135 (1329)
.+ -...-.+.-+||+ ..|.|||.+.-+.+++|.--.++|.+ |+|++ +|.-|+.|-+||.+..--.. -..
T Consensus 152 gI-dh~~~~~~FaTcG--e~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~ 228 (433)
T KOG0268|consen 152 GI-DHHRKNSVFATCG--EQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVIL 228 (433)
T ss_pred cc-ccccccccccccC--ceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeee
Confidence 12 1222244555554 45899999999999999988887777 99998 66678888888887655441 122
Q ss_pred ccccccCCCceeecCCCCccceEEEEeeccCccc--hhhccc-----ccccCCCCcceeEEEeeeccceecCCCCCCCce
Q 000725 1136 TSLFSKHSEKSSFCPSVGEDSAIWLLVSTISDSD--AQHNCM-----SRDCQKNPVRFWRLALLVKNRVILGSPLDPRAS 1208 (1329)
Q Consensus 1136 v~~fSgdvn~VsF~P~sGeD~AiwLLVST~Sdd~--t~~Dlr-----a~~~~gH~n~~wRLALl~K~siI~Gs~ldpra~ 1208 (1329)
.| .-|.++|.| .++.|- ++++|- +.||+| ++-|.+|.+++-. +
T Consensus 229 ~m----RTN~IswnP-eafnF~------~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~d-------------------V 278 (433)
T KOG0268|consen 229 TM----RTNTICWNP-EAFNFV------AANEDHNLYTYDMRNLSRPLNVHKDHVSAVMD-------------------V 278 (433)
T ss_pred ec----cccceecCc-ccccee------eccccccceehhhhhhcccchhhcccceeEEE-------------------e
Confidence 33 667799999 555443 444444 449999 7778889888766 8
Q ss_pred eeecCCCeEEeecCCCeEEEEEccccceeeeeecccCceEEEEEecCCCCceEEEecCCCCCCccccCCCCCCCCcEEEe
Q 000725 1209 AIGASSGLGIIGTNDGLVYAWELSSGNKLGILHHFKGGTVSCIATDDSGLQALAVAGDGPDGGRRQRDPRHGQNDHVRIW 1288 (1329)
Q Consensus 1209 afs~SG~~gfaGT~DGlVYmWDLstG~kL~tL~~Heg~rVSCVA~dps~p~~~AsA~d~~d~~~r~~~~~~s~D~~VRiW 1288 (1329)
+|+|.|.-+++|+.|..|.++-.-.|.--...|.-.=+.|.||..+ .++.=+.++ |.|+.||+|
T Consensus 279 dfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S-~Dskyi~SG---------------Sdd~nvRlW 342 (433)
T KOG0268|consen 279 DFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYS-MDSKYIISG---------------SDDGNVRLW 342 (433)
T ss_pred ccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEe-ccccEEEec---------------CCCcceeee
Confidence 8999999999999999999999999887777776666789999999 667645666 778999999
Q ss_pred eeCC--Cccee
Q 000725 1289 KMDP--NLGCV 1297 (1329)
Q Consensus 1289 ~~~~--~~~~~ 1297 (1329)
+... .||-.
T Consensus 343 ka~Aseklgv~ 353 (433)
T KOG0268|consen 343 KAKASEKLGVI 353 (433)
T ss_pred ecchhhhcCCC
Confidence 8754 35543
No 72
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.64 E-value=2.7e-15 Score=166.56 Aligned_cols=197 Identities=13% Similarity=0.196 Sum_probs=163.1
Q ss_pred EEEecc-cceeEEEEe-cCCeEEEecCCCeEEEEeccCcceEEEeeeeecCCCCcccceeEEEecCCCCCeeEecCCCcc
Q 000725 1006 AKLKTD-DCVQCILVC-EPKHLIAVGESGKLHLWEMNSSWSAQVEECIIPINDCIYPCIVEMKRIPKCAPLVVGHNGFGE 1083 (1329)
Q Consensus 1006 ~kL~~h-~sV~cIlVc-DpnhLVSaSdDGkL~IWDM~SgWsm~tee~Vi~~n~~v~p~I~elKrFpkss~lIVTgSGDgt 1083 (1329)
.-+.+| +=|+||.|- -+..++|+|.||++.|||++||=.-.+.- ||-..+-+| +|.+--.++.+++.|+.
T Consensus 145 rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkltlt-------Ghi~~vr~v-avS~rHpYlFs~gedk~ 216 (460)
T KOG0285|consen 145 RVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLT-------GHIETVRGV-AVSKRHPYLFSAGEDKQ 216 (460)
T ss_pred hhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeec-------chhheeeee-eecccCceEEEecCCCe
Confidence 446778 889999998 88899999999999999999998888887 888888888 99999999999999999
Q ss_pred EEEEEccccceeeeeccCccceeE--eccccccccccCcceEECcchhhhccccccccccCCCceeecCCCCccceEEEE
Q 000725 1084 FGIWDISKRVLVSRFSAARASIYQ--FFPINLFSWQRNGSVSMDASLELTNTATTSLFSKHSEKSSFCPSVGEDSAIWLL 1161 (1329)
Q Consensus 1084 f~LWDIskg~llqsF~ahs~sV~s--fsP~~s~S~d~~v~tfd~~s~d~~leatv~~fSgdvn~VsF~P~sGeD~AiwLL 1161 (1329)
++-||+++.+.|..++||=..|++ +-|.- | -|+
T Consensus 217 VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTl------------------------------------------d---vl~ 251 (460)
T KOG0285|consen 217 VKCWDLEYNKVIRHYHGHLSGVYCLDLHPTL------------------------------------------D---VLV 251 (460)
T ss_pred eEEEechhhhhHHHhccccceeEEEeccccc------------------------------------------e---eEE
Confidence 999999999999999999999988 44442 1 123
Q ss_pred eeccCccchhhccccc----ccCCCCcceeEEEeeeccceecCCCCCCCceeeecCCCeEEeecCCCeEEEEEcccccee
Q 000725 1162 VSTISDSDAQHNCMSR----DCQKNPVRFWRLALLVKNRVILGSPLDPRASAIGASSGLGIIGTNDGLVYAWELSSGNKL 1237 (1329)
Q Consensus 1162 VST~Sdd~t~~Dlra~----~~~gH~n~~wRLALl~K~siI~Gs~ldpra~afs~SG~~gfaGT~DGlVYmWDLstG~kL 1237 (1329)
.+..+..++.||+|++ ...||.+..-+ +.+-+-..-+++||+|++|.+||+.-|+.+
T Consensus 252 t~grDst~RvWDiRtr~~V~~l~GH~~~V~~-------------------V~~~~~dpqvit~S~D~tvrlWDl~agkt~ 312 (460)
T KOG0285|consen 252 TGGRDSTIRVWDIRTRASVHVLSGHTNPVAS-------------------VMCQPTDPQVITGSHDSTVRLWDLRAGKTM 312 (460)
T ss_pred ecCCcceEEEeeecccceEEEecCCCCccee-------------------EEeecCCCceEEecCCceEEEeeeccCcee
Confidence 3345556677888844 45677776666 444555667899999999999999999999
Q ss_pred eeeecccCceEEEEEecCCCCceEEEecCCCCCCccccCCCC
Q 000725 1238 GILHHFKGGTVSCIATDDSGLQALAVAGDGPDGGRRQRDPRH 1279 (1329)
Q Consensus 1238 ~tL~~Heg~rVSCVA~dps~p~~~AsA~d~~d~~~r~~~~~~ 1279 (1329)
.+|-+|+. .|-|++.||.... +|+|+ --.+++|..-+
T Consensus 313 ~tlt~hkk-svral~lhP~e~~-fASas---~dnik~w~~p~ 349 (460)
T KOG0285|consen 313 ITLTHHKK-SVRALCLHPKENL-FASAS---PDNIKQWKLPE 349 (460)
T ss_pred Eeeecccc-eeeEEecCCchhh-hhccC---CccceeccCCc
Confidence 99999999 9999999999887 88884 23567777643
No 73
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.62 E-value=9.5e-13 Score=128.10 Aligned_cols=289 Identities=20% Similarity=0.292 Sum_probs=205.1
Q ss_pred cccccceeeecCCCcEEEEecCccCccccCCCccccccccccccCCCCcEEEEEecCcceeeeEEEecc-c-ceeEEEE-
Q 000725 943 IALERSCALFTPDGQYLVLLDSMKTPYCREGRSDCLCSTCTSHRLDENAVKIVKVKPGYVSVVAKLKTD-D-CVQCILV- 1019 (1329)
Q Consensus 943 ~~~ersglqFTPDGQ~LvLlgsik~p~CR~~~~dC~Cs~C~~s~seDNtVKIv~V~~G~vsll~kL~~h-~-sV~cIlV- 1019 (1329)
......++.|.++|++++ ..+.|+.|++|+...+. ..+..+.++ . .+..+.+
T Consensus 64 ~~~~i~~~~~~~~~~~~~------------------------~~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 118 (466)
T COG2319 64 HEDSITSIAFSPDGELLL------------------------SGSSDGTIKLWDLDNGE-KLIKSLEGLHDSSVSKLALS 118 (466)
T ss_pred ccceEEEEEECCCCcEEE------------------------EecCCCcEEEEEcCCCc-eeEEEEeccCCCceeeEEEE
Confidence 334566788999999999 55589999999998874 346666664 3 6777776
Q ss_pred e-cCC-eEEEecC-CCeEEEEeccC-cceEEEeeeeecCCCCcccceeEEEecCCCCCeeEecCC-CccEEEEEccccce
Q 000725 1020 C-EPK-HLIAVGE-SGKLHLWEMNS-SWSAQVEECIIPINDCIYPCIVEMKRIPKCAPLVVGHNG-FGEFGIWDISKRVL 1094 (1329)
Q Consensus 1020 c-Dpn-hLVSaSd-DGkL~IWDM~S-gWsm~tee~Vi~~n~~v~p~I~elKrFpkss~lIVTgSG-Dgtf~LWDIskg~l 1094 (1329)
. +.. .++..+. |+.+.+||..+ ........ .|...|..+ .|.+.+..++.++. |+++.+||+..+..
T Consensus 119 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~-------~~~~~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (466)
T COG2319 119 SPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLE-------GHSESVTSL-AFSPDGKLLASGSSLDGTIKLWDLRTGKP 190 (466)
T ss_pred CCCcceEEeccCCCCccEEEEEecCCCeEEEEEe-------cCcccEEEE-EECCCCCEEEecCCCCCceEEEEcCCCce
Confidence 3 555 6666566 99999999998 66666666 677777788 77777878888886 99999999999999
Q ss_pred eeeeccCccceeE--ecccc-----ccccccCcceEECcchhhhccccccccccCCCc-e-eecCCCCccceEEEEeecc
Q 000725 1095 VSRFSAARASIYQ--FFPIN-----LFSWQRNGSVSMDASLELTNTATTSLFSKHSEK-S-SFCPSVGEDSAIWLLVSTI 1165 (1329)
Q Consensus 1095 lqsF~ahs~sV~s--fsP~~-----s~S~d~~v~tfd~~s~d~~leatv~~fSgdvn~-V-sF~P~sGeD~AiwLLVST~ 1165 (1329)
++.+.+|...|.. +.|++ +++.|+.+++|+....+.... .+.++.+. + .|.| + ...++.++.
T Consensus 191 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~----~~~~~~~~~~~~~~~----~-~~~~~~~~~ 261 (466)
T COG2319 191 LSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRS----TLSGHSDSVVSSFSP----D-GSLLASGSS 261 (466)
T ss_pred EEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEee----ecCCCCcceeEeECC----C-CCEEEEecC
Confidence 9999999999999 77776 347899999996663333211 23333332 2 6888 3 245556777
Q ss_pred CccchhhcccccccCCCCcceeEEEeeec-cceecCCCCCCCceeeecCCCeEEeecCCCeEEEEEccccceeeeee--c
Q 000725 1166 SDSDAQHNCMSRDCQKNPVRFWRLALLVK-NRVILGSPLDPRASAIGASSGLGIIGTNDGLVYAWELSSGNKLGILH--H 1242 (1329)
Q Consensus 1166 Sdd~t~~Dlra~~~~gH~n~~wRLALl~K-~siI~Gs~ldpra~afs~SG~~gfaGT~DGlVYmWDLstG~kL~tL~--~ 1242 (1329)
+...+.||++.... .+..+.. ..-+ ..+.+.+.+..+++|+.|+.+.+||+.++.....+. .
T Consensus 262 d~~~~~~~~~~~~~--------~~~~~~~~~~~v-------~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 326 (466)
T COG2319 262 DGTIRLWDLRSSSS--------LLRTLSGHSSSV-------LSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKG 326 (466)
T ss_pred CCcEEEeeecCCCc--------EEEEEecCCccE-------EEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecc
Confidence 77788899985541 1222211 1111 124666688888889999999999999999999987 9
Q ss_pred ccCceEEEEEecCCCCceEEEecCCCCCCccccCCCCCCCCcEEEeeeCCC
Q 000725 1243 FKGGTVSCIATDDSGLQALAVAGDGPDGGRRQRDPRHGQNDHVRIWKMDPN 1293 (1329)
Q Consensus 1243 Heg~rVSCVA~dps~p~~~AsA~d~~d~~~r~~~~~~s~D~~VRiW~~~~~ 1293 (1329)
|.+ .|..+++ +.....++.+. ..|+.+++|...... .+..+....+
T Consensus 327 ~~~-~~~~~~~-~~~~~~~~~~~-~~d~~~~~~~~~~~~--~~~~~~~~~~ 372 (466)
T COG2319 327 HEG-PVSSLSF-SPDGSLLVSGG-SDDGTIRLWDLRTGK--PLKTLEGHSN 372 (466)
T ss_pred cCC-ceEEEEE-CCCCCEEEEee-cCCCcEEeeecCCCc--eeEEecCCce
Confidence 999 8999999 53323244442 455777777775555 4444444443
No 74
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.62 E-value=2e-15 Score=169.28 Aligned_cols=235 Identities=13% Similarity=0.173 Sum_probs=181.8
Q ss_pred ccceeeecCCCcEEEEecCccCccccCCCccccccccccccCCCCcEEEEEecCcceeeeEEEecc--cceeEEEEe-cC
Q 000725 946 ERSCALFTPDGQYLVLLDSMKTPYCREGRSDCLCSTCTSHRLDENAVKIVKVKPGYVSVVAKLKTD--DCVQCILVC-EP 1022 (1329)
Q Consensus 946 ersglqFTPDGQ~LvLlgsik~p~CR~~~~dC~Cs~C~~s~seDNtVKIv~V~~G~vsll~kL~~h--~sV~cIlVc-Dp 1022 (1329)
.-.++.++++|+++| ++.++++||+||.+--. ++.+.+| ..|+|+.++ --
T Consensus 140 ~Vr~m~ws~~g~wmi------------------------SgD~gG~iKyWqpnmnn---Vk~~~ahh~eaIRdlafSpnD 192 (464)
T KOG0284|consen 140 PVRTMKWSHNGTWMI------------------------SGDKGGMIKYWQPNMNN---VKIIQAHHAEAIRDLAFSPND 192 (464)
T ss_pred cceeEEEccCCCEEE------------------------EcCCCceEEecccchhh---hHHhhHhhhhhhheeccCCCC
Confidence 357899999999999 99999999999998755 5556666 899999999 56
Q ss_pred CeEEEecCCCeEEEEeccCcceEEEeeeeecCCCCcccceeEEEecCCCCCeeEecCCCccEEEEEccccceeeeeccCc
Q 000725 1023 KHLIAVGESGKLHLWEMNSSWSAQVEECIIPINDCIYPCIVEMKRIPKCAPLVVGHNGFGEFGIWDISKRVLVSRFSAAR 1102 (1329)
Q Consensus 1023 nhLVSaSdDGkL~IWDM~SgWsm~tee~Vi~~n~~v~p~I~elKrFpkss~lIVTgSGDgtf~LWDIskg~llqsF~ahs 1102 (1329)
..++|+|+||+|.|||-. +.++|-|+ .+|+--+-++ ...+.-.+|++||-|..++|||-.+|+|+.+.++|.
T Consensus 193 skF~t~SdDg~ikiWdf~----~~kee~vL---~GHgwdVksv-dWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HK 264 (464)
T KOG0284|consen 193 SKFLTCSDDGTIKIWDFR----MPKEERVL---RGHGWDVKSV-DWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHK 264 (464)
T ss_pred ceeEEecCCCeEEEEecc----CCchhhee---ccCCCCccee-ccCCccceeEEccCCceeEeecCCCcchhhhhhhcc
Confidence 688999999999999953 34455444 4888888888 899999999999999999999999999999999999
Q ss_pred cceeE--ecccc----ccccccCcceEECcchhhhc--cccccccccCCCceeecCCCCccceEEEEeeccCccchh-hc
Q 000725 1103 ASIYQ--FFPIN----LFSWQRNGSVSMDASLELTN--TATTSLFSKHSEKSSFCPSVGEDSAIWLLVSTISDSDAQ-HN 1173 (1329)
Q Consensus 1103 ~sV~s--fsP~~----s~S~d~~v~tfd~~s~d~~l--eatv~~fSgdvn~VsF~P~sGeD~AiwLLVST~Sdd~t~-~D 1173 (1329)
..|++ |.|.+ +.|=|-.+++||++.-.+.+ .+|.- ++..+..+|+ -++ ||++.+.|.--. |+
T Consensus 265 ntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkk----dv~~~~WhP~-~~~----lftsgg~Dgsvvh~~ 335 (464)
T KOG0284|consen 265 NTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKK----DVTSLTWHPL-NES----LFTSGGSDGSVVHWV 335 (464)
T ss_pred ceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchh----hheeeccccc-ccc----ceeeccCCCceEEEe
Confidence 99999 99999 78889999999999665552 33444 5566889993 333 566555554333 44
Q ss_pred ccccc-----cCCCCcceeEEEeeeccceecCCCCCCCceeeecCCCeEEeecCCCeEEEEEc-cccceeeeeecc
Q 000725 1174 CMSRD-----CQKNPVRFWRLALLVKNRVILGSPLDPRASAIGASSGLGIIGTNDGLVYAWEL-SSGNKLGILHHF 1243 (1329)
Q Consensus 1174 lra~~-----~~gH~n~~wRLALl~K~siI~Gs~ldpra~afs~SG~~gfaGT~DGlVYmWDL-stG~kL~tL~~H 1243 (1329)
+-... =-.|-..+|.|+ --|=|-++.+|++|.+|.+|-= ..|.++..-.++
T Consensus 336 v~~~~p~~~i~~AHd~~iwsl~-------------------~hPlGhil~tgsnd~t~rfw~r~rp~d~~~~~~~~ 392 (464)
T KOG0284|consen 336 VGLEEPLGEIPPAHDGEIWSLA-------------------YHPLGHILATGSNDRTVRFWTRNRPGDKNADDVGL 392 (464)
T ss_pred ccccccccCCCcccccceeeee-------------------ccccceeEeecCCCcceeeeccCCCCCcccccccc
Confidence 43111 124667788855 5788999999999999999953 234444443333
No 75
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.61 E-value=7.2e-15 Score=174.04 Aligned_cols=251 Identities=15% Similarity=0.225 Sum_probs=183.1
Q ss_pred eeEEEe-cc-cceeEEEEe-cCCeEEEecCCCeEEEEeccCcceEEEee-------------------------------
Q 000725 1004 VVAKLK-TD-DCVQCILVC-EPKHLIAVGESGKLHLWEMNSSWSAQVEE------------------------------- 1049 (1329)
Q Consensus 1004 ll~kL~-~h-~sV~cIlVc-DpnhLVSaSdDGkL~IWDM~SgWsm~tee------------------------------- 1049 (1329)
..+++. +| ++|-|+-|+ |++||+|||+||-|+||-+--.-++..++
T Consensus 258 ~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s 337 (712)
T KOG0283|consen 258 VVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTS 337 (712)
T ss_pred EeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccc
Confidence 556777 89 999999999 99999999999999999844311111111
Q ss_pred -----------------eee-----cCCCCcccceeEEEecCCCCCeeEecCCCccEEEEEccccceeeeeccCccceeE
Q 000725 1050 -----------------CII-----PINDCIYPCIVEMKRIPKCAPLVVGHNGFGEFGIWDISKRVLVSRFSAARASIYQ 1107 (1329)
Q Consensus 1050 -----------------~Vi-----~~n~~v~p~I~elKrFpkss~lIVTgSGDgtf~LWDIskg~llqsF~ahs~sV~s 1107 (1329)
|++ -..+||..-|++| ...| .+.||+.|.|.|++||++...+||..|. |.+.|++
T Consensus 338 ~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDl-SWSK-n~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTc 414 (712)
T KOG0283|consen 338 SSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDL-SWSK-NNFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTC 414 (712)
T ss_pred ccccccCCccccCCCccccccccchhhhhccchhheec-cccc-CCeeEeccccccEEeecCCCcceeeEEe-cCCeeEE
Confidence 222 2234577777777 7888 7899999999999999999999999997 9999999
Q ss_pred --ecccc-----ccccccCcceEECcchhhhc-cccccccccCCCceeecCCCCccceEEEEeeccCccchhhccccccc
Q 000725 1108 --FFPIN-----LFSWQRNGSVSMDASLELTN-TATTSLFSKHSEKSSFCPSVGEDSAIWLLVSTISDSDAQHNCMSRDC 1179 (1329)
Q Consensus 1108 --fsP~~-----s~S~d~~v~tfd~~s~d~~l-eatv~~fSgdvn~VsF~P~sGeD~AiwLLVST~Sdd~t~~Dlra~~~ 1179 (1329)
|+|.. ++|+|+.||+|++...+=-. -.+.--++. ++|.| | |.-.+|||....-+.||.+-.+
T Consensus 415 VaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITA----vcy~P----d-Gk~avIGt~~G~C~fY~t~~lk- 484 (712)
T KOG0283|consen 415 VAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLITA----VCYSP----D-GKGAVIGTFNGYCRFYDTEGLK- 484 (712)
T ss_pred EEecccCCCcEeecccccceEEeecCcCeeEeehhhhhhhee----EEecc----C-CceEEEEEeccEEEEEEccCCe-
Confidence 99998 99999999999998765441 122233555 99999 7 7788999999888887766222
Q ss_pred CCCCcceeEEEee----eccceecCCCCCCCceeeecCCCeEEeecCCCeEEEEEccccceeeeeecccCceE-EEEEec
Q 000725 1180 QKNPVRFWRLALL----VKNRVILGSPLDPRASAIGASSGLGIIGTNDGLVYAWELSSGNKLGILHHFKGGTV-SCIATD 1254 (1329)
Q Consensus 1180 ~gH~n~~wRLALl----~K~siI~Gs~ldpra~afs~SG~~gfaGT~DGlVYmWDLstG~kL~tL~~Heg~rV-SCVA~d 1254 (1329)
-.-.|.+.+- ++..-|.|.+..|-... -++--|+|-.|.|.|+-+-..+..|.||.++.= ..-++.
T Consensus 485 ---~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~------~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs 555 (712)
T KOG0283|consen 485 ---LVSDFHIRLHNKKKKQGKRITGLQFFPGDPD------EVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFS 555 (712)
T ss_pred ---EEEeeeEeeccCccccCceeeeeEecCCCCC------eEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEc
Confidence 1223344432 12235667744443322 577779999999999999999999999887422 122333
Q ss_pred CCCCceEEEecCCCCCCccccCCCCCCCCcEEEeeeCC
Q 000725 1255 DSGLQALAVAGDGPDGGRRQRDPRHGQNDHVRIWKMDP 1292 (1329)
Q Consensus 1255 ps~p~~~AsA~d~~d~~~r~~~~~~s~D~~VRiW~~~~ 1292 (1329)
.++.- |++| |-|..|-||++++
T Consensus 556 ~Dgk~-IVs~---------------seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 556 SDGKH-IVSA---------------SEDSWVYIWKNDS 577 (712)
T ss_pred cCCCE-EEEe---------------ecCceEEEEeCCC
Confidence 33433 6667 6788899999854
No 76
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.60 E-value=6.3e-15 Score=167.58 Aligned_cols=237 Identities=14% Similarity=0.127 Sum_probs=181.5
Q ss_pred eeeEEEecc-cceeEEEEe--cCCeEEEecCCCeEEEEeccC-cceEEEeeeeecCCCCcccceeEEEecCCCCCeeEec
Q 000725 1003 SVVAKLKTD-DCVQCILVC--EPKHLIAVGESGKLHLWEMNS-SWSAQVEECIIPINDCIYPCIVEMKRIPKCAPLVVGH 1078 (1329)
Q Consensus 1003 sll~kL~~h-~sV~cIlVc--DpnhLVSaSdDGkL~IWDM~S-gWsm~tee~Vi~~n~~v~p~I~elKrFpkss~lIVTg 1078 (1329)
.++++|.+| .+|.+|-+. -..-|.|+|+|++|+||++-. +-+++++- +|.-.|-++ +|++|+..++|+
T Consensus 205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~-------gH~k~Vrd~-~~s~~g~~fLS~ 276 (503)
T KOG0282|consen 205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFK-------GHRKPVRDA-SFNNCGTSFLSA 276 (503)
T ss_pred hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhh-------cchhhhhhh-hccccCCeeeee
Confidence 488999999 999999999 445567999999999999776 88888888 999999999 999999999999
Q ss_pred CCCccEEEEEccccceeeeeccCccceeE-ecccc-----ccccccCcceEECcchhhhc--cccccccccCCCceeecC
Q 000725 1079 NGFGEFGIWDISKRVLVSRFSAARASIYQ-FFPIN-----LFSWQRNGSVSMDASLELTN--TATTSLFSKHSEKSSFCP 1150 (1329)
Q Consensus 1079 SGDgtf~LWDIskg~llqsF~ahs~sV~s-fsP~~-----s~S~d~~v~tfd~~s~d~~l--eatv~~fSgdvn~VsF~P 1150 (1329)
|+|++++|||+++|+++++|+.-.-.-.. |-|+. .+-.|+.|+.||.++++-.. ..|-. -++.+.|.|
T Consensus 277 sfD~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg----~i~~i~F~~ 352 (503)
T KOG0282|consen 277 SFDRFLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLG----AILDITFVD 352 (503)
T ss_pred ecceeeeeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhh----heeeeEEcc
Confidence 99999999999999999999854333222 99998 77889999999999999773 24444 345599998
Q ss_pred CCCccceEEEEeeccCccchhhcccc---cccCCCCcceeEEEeeeccceecCCCCCCCceeeecCCCeEEeecCCCeEE
Q 000725 1151 SVGEDSAIWLLVSTISDSDAQHNCMS---RDCQKNPVRFWRLALLVKNRVILGSPLDPRASAIGASSGLGIIGTNDGLVY 1227 (1329)
Q Consensus 1151 ~sGeD~AiwLLVST~Sdd~t~~Dlra---~~~~gH~n~~wRLALl~K~siI~Gs~ldpra~afs~SG~~gfaGT~DGlVY 1227 (1329)
+ +..+..|+.+.+.+.|+.+- -.++..++. .-| +++...|+|+.+++=+.|+.|+
T Consensus 353 ----~-g~rFissSDdks~riWe~~~~v~ik~i~~~~~-----------hsm------P~~~~~P~~~~~~aQs~dN~i~ 410 (503)
T KOG0282|consen 353 ----E-GRRFISSSDDKSVRIWENRIPVPIKNIADPEM-----------HTM------PCLTLHPNGKWFAAQSMDNYIA 410 (503)
T ss_pred ----C-CceEeeeccCccEEEEEcCCCccchhhcchhh-----------ccC------cceecCCCCCeehhhccCceEE
Confidence 4 66666666777777788771 111111111 112 4589999999999999999999
Q ss_pred EEEccccceeeeeecccCceE----EEEEecCCCCceEEEecCCCCCCccccC
Q 000725 1228 AWELSSGNKLGILHHFKGGTV----SCIATDDSGLQALAVAGDGPDGGRRQRD 1276 (1329)
Q Consensus 1228 mWDLstG~kL~tL~~Heg~rV----SCVA~dps~p~~~AsA~d~~d~~~r~~~ 1276 (1329)
+..+.--=++..-..|+|-+| .-|.++|++.- ++++ +.||-+-+||
T Consensus 411 ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~-l~SG--dsdG~v~~wd 460 (503)
T KOG0282|consen 411 IFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRT-LCSG--DSDGKVNFWD 460 (503)
T ss_pred EEecccccccCHhhhhcceeccCceeeEEEcCCCCe-EEee--cCCccEEEee
Confidence 999887777777777777444 34778866664 5555 4444444444
No 77
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.59 E-value=2.2e-14 Score=170.70 Aligned_cols=272 Identities=13% Similarity=0.135 Sum_probs=191.3
Q ss_pred ceeeecCCCcEEEEecCccCccccCCCccccccccccccCCCCcEEEEEecCcceeeeEEEecc-cceeEEEEe-cCCeE
Q 000725 948 SCALFTPDGQYLVLLDSMKTPYCREGRSDCLCSTCTSHRLDENAVKIVKVKPGYVSVVAKLKTD-DCVQCILVC-EPKHL 1025 (1329)
Q Consensus 948 sglqFTPDGQ~LvLlgsik~p~CR~~~~dC~Cs~C~~s~seDNtVKIv~V~~G~vsll~kL~~h-~sV~cIlVc-DpnhL 1025 (1329)
-|+.|.|++-+.| +|++|-+||+|+-++-. ++-+|.|| +-|+.+.+- +--.|
T Consensus 55 Rgv~FH~~qplFV------------------------SGGDDykIkVWnYk~rr--clftL~GHlDYVRt~~FHheyPWI 108 (1202)
T KOG0292|consen 55 RGVDFHPTQPLFV------------------------SGGDDYKIKVWNYKTRR--CLFTLLGHLDYVRTVFFHHEYPWI 108 (1202)
T ss_pred ceeeecCCCCeEE------------------------ecCCccEEEEEecccce--ehhhhccccceeEEeeccCCCceE
Confidence 4899999999999 99999999999999966 99999999 999999999 99999
Q ss_pred EEecCCCeEEEEeccCcceEEEeeeeecCCCCcccceeEEEecCCCCCeeEecCCCccEEEEEccccce-----------
Q 000725 1026 IAVGESGKLHLWEMNSSWSAQVEECIIPINDCIYPCIVEMKRIPKCAPLVVGHNGFGEFGIWDISKRVL----------- 1094 (1329)
Q Consensus 1026 VSaSdDGkL~IWDM~SgWsm~tee~Vi~~n~~v~p~I~elKrFpkss~lIVTgSGDgtf~LWDIskg~l----------- 1094 (1329)
+|||||-+|+||.|.|.-++.++- ||.+++|+- +|.+...+||++|-|.|+|+|||+--..
T Consensus 109 lSASDDQTIrIWNwqsr~~iavlt-------GHnHYVMcA-qFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~ 180 (1202)
T KOG0292|consen 109 LSASDDQTIRIWNWQSRKCIAVLT-------GHNHYVMCA-QFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQ 180 (1202)
T ss_pred EEccCCCeEEEEeccCCceEEEEe-------cCceEEEee-ccCCccceEEEecccceEEEEeecchhccCCCCCCchhh
Confidence 999999999999999999999999 999999999 9999999999999999999999973221
Q ss_pred ------------------eeeeccCccceeE--ecccc----ccccccCcceEECcchhhh----ccccccccccCCCce
Q 000725 1095 ------------------VSRFSAARASIYQ--FFPIN----LFSWQRNGSVSMDASLELT----NTATTSLFSKHSEKS 1146 (1329)
Q Consensus 1095 ------------------lqsF~ahs~sV~s--fsP~~----s~S~d~~v~tfd~~s~d~~----leatv~~fSgdvn~V 1146 (1329)
-+..+||---|.- |-|+- +++=|+.|++|-..--..- .-+|-- .+.+|
T Consensus 181 ~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~n----nVssv 256 (1202)
T KOG0292|consen 181 MRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYN----NVSSV 256 (1202)
T ss_pred hhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccC----CcceE
Confidence 0123344333332 44432 4444444444433221111 012222 34448
Q ss_pred eecCCCCccceEEEEeeccCccchhhccc----ccccCCCCcceeEEEeeeccceecCCCCCCCc---------eeeecC
Q 000725 1147 SFCPSVGEDSAIWLLVSTISDSDAQHNCM----SRDCQKNPVRFWRLALLVKNRVILGSPLDPRA---------SAIGAS 1213 (1329)
Q Consensus 1147 sF~P~sGeD~AiwLLVST~Sdd~t~~Dlr----a~~~~gH~n~~wRLALl~K~siI~Gs~ldpra---------~afs~S 1213 (1329)
-|+| - .--||..+-+.+++.||+. ..+|.--+.|.|.||.- ++.=.|+..=|--. -|..++
T Consensus 257 lfhp----~-q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laah-P~lNLfAAgHDsGm~VFkleRErpa~~v~ 330 (1202)
T KOG0292|consen 257 LFHP----H-QDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAH-PELNLFAAGHDSGMIVFKLERERPAYAVN 330 (1202)
T ss_pred EecC----c-cceeEecCCCccEEEEecccccceeeeeccCCeEEEEEec-CCcceeeeecCCceEEEEEcccCceEEEc
Confidence 8999 3 5678877777788889998 66676678899998852 11112332222211 233344
Q ss_pred CCeEEeecCCCeEEEEEccccceee--eeeccc--CceEEEEEecCCCCceEEEec
Q 000725 1214 SGLGIIGTNDGLVYAWELSSGNKLG--ILHHFK--GGTVSCIATDDSGLQALAVAG 1265 (1329)
Q Consensus 1214 G~~gfaGT~DGlVYmWDLstG~kL~--tL~~He--g~rVSCVA~dps~p~~~AsA~ 1265 (1329)
|+.+|=-- |.-|+-.|+.|.+-+. .|.+-. ...+-++.+.|++.- +.+++
T Consensus 331 ~n~LfYvk-d~~i~~~d~~t~~d~~v~~lr~~g~~~~~~~smsYNpae~~-vlics 384 (1202)
T KOG0292|consen 331 GNGLFYVK-DRFIRSYDLRTQKDTAVASLRRPGTLWQPPRSLSYNPAENA-VLICS 384 (1202)
T ss_pred CCEEEEEc-cceEEeeeccccccceeEeccCCCcccCCcceeeeccccCe-EEEEe
Confidence 44444433 8888888988844333 332221 125777899988876 55553
No 78
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.59 E-value=3.3e-14 Score=167.50 Aligned_cols=255 Identities=20% Similarity=0.196 Sum_probs=207.1
Q ss_pred CCCCcEEEEEecC-cceee------eEEEecc-cceeEEEEecCCeEEEecCCCeEEEEeccCcceEEEeeeeecCCCCc
Q 000725 987 LDENAVKIVKVKP-GYVSV------VAKLKTD-DCVQCILVCEPKHLIAVGESGKLHLWEMNSSWSAQVEECIIPINDCI 1058 (1329)
Q Consensus 987 seDNtVKIv~V~~-G~vsl------l~kL~~h-~sV~cIlVcDpnhLVSaSdDGkL~IWDM~SgWsm~tee~Vi~~n~~v 1058 (1329)
.++|+|-.|.+.- +.-++ --++-|| ..|+.+.||+.+.++.++-.+.|+||+..|+-+++|.. |-
T Consensus 341 l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~-------~~ 413 (888)
T KOG0306|consen 341 LANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTIT-------CG 413 (888)
T ss_pred eecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecCCCcEEEEEccCcceeEEec-------cc
Confidence 4567777777554 22100 1356788 99999999988888888889999999999999999998 65
Q ss_pred ccceeEEEecCCCCCeeEecCCCccEEEEEccccceeeeeccCccceeE--ecccc----ccccccCcceEECcchhh--
Q 000725 1059 YPCIVEMKRIPKCAPLVVGHNGFGEFGIWDISKRVLVSRFSAARASIYQ--FFPIN----LFSWQRNGSVSMDASLEL-- 1130 (1329)
Q Consensus 1059 ~p~I~elKrFpkss~lIVTgSGDgtf~LWDIskg~llqsF~ahs~sV~s--fsP~~----s~S~d~~v~tfd~~s~d~-- 1130 (1329)
++++. .|-+-+.+||.|---|++-|+|+++..++-+..||.+.+++ ++|++ ++|-|.+|+.|+.-.+..
T Consensus 414 --y~l~~-~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~ 490 (888)
T KOG0306|consen 414 --YILAS-KFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVP 490 (888)
T ss_pred --cEEEE-EecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccC
Confidence 78888 77777999999999999999999999999999999999999 89998 899999999999876655
Q ss_pred ----h---c-cccccccccCCCceeecCCCCccceEEEEeeccCccchhhccc-ccccCCCCcceeEEEeeeccceecCC
Q 000725 1131 ----T---N-TATTSLFSKHSEKSSFCPSVGEDSAIWLLVSTISDSDAQHNCM-SRDCQKNPVRFWRLALLVKNRVILGS 1201 (1329)
Q Consensus 1131 ----~---l-eatv~~fSgdvn~VsF~P~sGeD~AiwLLVST~Sdd~t~~Dlr-a~~~~gH~n~~wRLALl~K~siI~Gs 1201 (1329)
+ + .+...-+..++-.++++| | ++.|-||=++.+.+.|=+- ++= -|.| -|-
T Consensus 491 gt~~k~lsl~~~rtLel~ddvL~v~~Sp----d-gk~LaVsLLdnTVkVyflDtlKF---------flsL-------YGH 549 (888)
T KOG0306|consen 491 GTQKKVLSLKHTRTLELEDDVLCVSVSP----D-GKLLAVSLLDNTVKVYFLDTLKF---------FLSL-------YGH 549 (888)
T ss_pred cccceeeeeccceEEeccccEEEEEEcC----C-CcEEEEEeccCeEEEEEecceee---------eeee-------ccc
Confidence 1 2 344455666777799999 8 8999999999888775443 221 2333 355
Q ss_pred CCCCCceeeecCCCeEEeecCCCeEEEEEccccceeeeeecccCceEEEEEecCCCCceEEEecCCCCCCccccC
Q 000725 1202 PLDPRASAIGASSGLGIIGTNDGLVYAWELSSGNKLGILHHFKGGTVSCIATDDSGLQALAVAGDGPDGGRRQRD 1276 (1329)
Q Consensus 1202 ~ldpra~afs~SG~~gfaGT~DGlVYmWDLstG~kL~tL~~Heg~rVSCVA~dps~p~~~AsA~d~~d~~~r~~~ 1276 (1329)
.|--++.++++++..+++|+-|++|+||=|.=|-+--.+++|++ .|.||.+-|.... +-+| +-|+-+|+||
T Consensus 550 kLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdD-Svm~V~F~P~~~~-FFt~--gKD~kvKqWD 620 (888)
T KOG0306|consen 550 KLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDD-SVMSVQFLPKTHL-FFTC--GKDGKVKQWD 620 (888)
T ss_pred ccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccC-ceeEEEEccccee-EEEe--cCcceEEeec
Confidence 56667799999999999999999999999999999999999999 9999999985554 6666 3466666664
No 79
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.59 E-value=1.1e-13 Score=149.66 Aligned_cols=276 Identities=13% Similarity=0.093 Sum_probs=201.6
Q ss_pred ccccceeeecCCCcEEEEecCccCccccCCCccccccccccccCCCCcEEEEEecCcceeeeEEE--ecc-cceeEEEEe
Q 000725 944 ALERSCALFTPDGQYLVLLDSMKTPYCREGRSDCLCSTCTSHRLDENAVKIVKVKPGYVSVVAKL--KTD-DCVQCILVC 1020 (1329)
Q Consensus 944 ~~ersglqFTPDGQ~LvLlgsik~p~CR~~~~dC~Cs~C~~s~seDNtVKIv~V~~G~vsll~kL--~~h-~sV~cIlVc 1020 (1329)
...--+|+|+-||.+|+ +++-|+++++|++..+. .++++ .+| ++|-.+++-
T Consensus 20 ~~~v~Sv~wn~~g~~la------------------------sgs~dktv~v~n~e~~r--~~~~~~~~gh~~svdql~w~ 73 (313)
T KOG1407|consen 20 VQKVHSVAWNCDGTKLA------------------------SGSFDKTVSVWNLERDR--FRKELVYRGHTDSVDQLCWD 73 (313)
T ss_pred hhcceEEEEcccCceee------------------------ecccCCceEEEEecchh--hhhhhcccCCCcchhhheeC
Confidence 34567899999999999 99999999999999985 66554 566 678777776
Q ss_pred --cCCeEEEecCCCeEEEEeccCcceEEEeeeeecCCCCcccceeEEEecCCCCCeeEecCCCccEEEEEccccceeeee
Q 000725 1021 --EPKHLIAVGESGKLHLWEMNSSWSAQVEECIIPINDCIYPCIVEMKRIPKCAPLVVGHNGFGEFGIWDISKRVLVSRF 1098 (1329)
Q Consensus 1021 --DpnhLVSaSdDGkL~IWDM~SgWsm~tee~Vi~~n~~v~p~I~elKrFpkss~lIVTgSGDgtf~LWDIskg~llqsF 1098 (1329)
-|..+++++.|+++++||..++-.+..-+ .-+..|+- ...+++.+++-++-|-.+..-|+++.+.+.++
T Consensus 74 ~~~~d~~atas~dk~ir~wd~r~~k~~~~i~-------~~~eni~i--~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~ 144 (313)
T KOG1407|consen 74 PKHPDLFATASGDKTIRIWDIRSGKCTARIE-------TKGENINI--TWSPDGEYIAVGNKDDRITFIDARTYKIVNEE 144 (313)
T ss_pred CCCCcceEEecCCceEEEEEeccCcEEEEee-------ccCcceEE--EEcCCCCEEEEecCcccEEEEEecccceeehh
Confidence 78889999999999999999987776655 22222222 46788999999999999999999999987666
Q ss_pred ccCccceeE-ec-ccc-cc--ccccCcceEECcchhhhccccccccccCCCceeecCCCCccceEEEEeeccCccchhhc
Q 000725 1099 SAARASIYQ-FF-PIN-LF--SWQRNGSVSMDASLELTNTATTSLFSKHSEKSSFCPSVGEDSAIWLLVSTISDSDAQHN 1173 (1329)
Q Consensus 1099 ~ahs~sV~s-fs-P~~-s~--S~d~~v~tfd~~s~d~~leatv~~fSgdvn~VsF~P~sGeD~AiwLLVST~Sdd~t~~D 1173 (1329)
.-.--..-. +. +.. .| .=-|.|.+.++.+.+.......|+... --+.|.| | |..+.+|+++....+||
T Consensus 145 ~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snC--icI~f~p----~-GryfA~GsADAlvSLWD 217 (313)
T KOG1407|consen 145 QFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNC--ICIEFDP----D-GRYFATGSADALVSLWD 217 (313)
T ss_pred cccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcce--EEEEECC----C-CceEeeccccceeeccC
Confidence 533221111 11 111 11 112556777777544442222232211 2288999 6 88888999999999999
Q ss_pred cc----ccccCCCCcceeEEEeeeccceecCCCCCCCceeeecCCCeEEeecCCCeEEEEEccccceeeeeecccCceEE
Q 000725 1174 CM----SRDCQKNPVRFWRLALLVKNRVILGSPLDPRASAIGASSGLGIIGTNDGLVYAWELSSGNKLGILHHFKGGTVS 1249 (1329)
Q Consensus 1174 lr----a~~~~gH~n~~wRLALl~K~siI~Gs~ldpra~afs~SG~~gfaGT~DGlVYmWDLstG~kL~tL~~Heg~rVS 1249 (1329)
+. ...++ ||. -+. |++.|+-+|+++++||+|.-|-+=++.||.++...++-.- --
T Consensus 218 ~~ELiC~R~is-------Rld--------wpV----RTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~~~~--t~ 276 (313)
T KOG1407|consen 218 VDELICERCIS-------RLD--------WPV----RTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPCEGP--TF 276 (313)
T ss_pred hhHhhhheeec-------ccc--------Cce----EEEEeccCcceeeccCccceEEeEecccCCeEEEeeccCC--ce
Confidence 87 22211 111 122 7899999999999999999999999999999999976443 56
Q ss_pred EEEecCCCCceEEEecCCCCCCccccCCCCCCC-CcEEEeee
Q 000725 1250 CIATDDSGLQALAVAGDGPDGGRRQRDPRHGQN-DHVRIWKM 1290 (1329)
Q Consensus 1250 CVA~dps~p~~~AsA~d~~d~~~r~~~~~~s~D-~~VRiW~~ 1290 (1329)
.||-||+.+- +|.|.|+-|+- .+-+ ++|||+..
T Consensus 277 tVAWHPk~~L-LAyA~ddk~~d-------~~reag~vKiFG~ 310 (313)
T KOG1407|consen 277 TVAWHPKRPL-LAYACDDKDGD-------SNREAGTVKIFGL 310 (313)
T ss_pred eEEecCCCce-eeEEecCCCCc-------cccccceeEEecC
Confidence 8899999999 99998887771 1222 78888754
No 80
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.58 E-value=3.4e-14 Score=161.79 Aligned_cols=242 Identities=16% Similarity=0.097 Sum_probs=195.9
Q ss_pred CcEEEEEecCcceeeeEEEecc-cceeEEEEe-cCCeEEEecCCCeEEEEeccCcceEEEeeeeecCCCCcccceeEEEe
Q 000725 990 NAVKIVKVKPGYVSVVAKLKTD-DCVQCILVC-EPKHLIAVGESGKLHLWEMNSSWSAQVEECIIPINDCIYPCIVEMKR 1067 (1329)
Q Consensus 990 NtVKIv~V~~G~vsll~kL~~h-~sV~cIlVc-DpnhLVSaSdDGkL~IWDM~SgWsm~tee~Vi~~n~~v~p~I~elKr 1067 (1329)
-.|-|++..+ .+++.+|.-. +.|.++.|+ |++-|+++.+.|.++|+||.|--..+..+ .|...+... +
T Consensus 48 ~rvqly~~~~--~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~-------ah~apv~~~-~ 117 (487)
T KOG0310|consen 48 VRVQLYSSVT--RSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLY-------AHQAPVHVT-K 117 (487)
T ss_pred cEEEEEecch--hhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHh-------hccCceeEE-E
Confidence 4678999888 5699999999 999999999 99999999999999999998844445555 789999999 5
Q ss_pred cCC-CCCeeEecCCCccEEEEEccccceeeeeccCccceeE--ecccc-----ccccccCcceEECcchhhh-c-ccccc
Q 000725 1068 IPK-CAPLVVGHNGFGEFGIWDISKRVLVSRFSAARASIYQ--FFPIN-----LFSWQRNGSVSMDASLELT-N-TATTS 1137 (1329)
Q Consensus 1068 Fpk-ss~lIVTgSGDgtf~LWDIskg~llqsF~ahs~sV~s--fsP~~-----s~S~d~~v~tfd~~s~d~~-l-eatv~ 1137 (1329)
|++ +..+.++||-|+.+.+||+++..-+..+.+|.+-|-+ +.|.. +++|||+|++||+++-... + ..|.+
T Consensus 118 f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~ 197 (487)
T KOG0310|consen 118 FSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGC 197 (487)
T ss_pred ecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCC
Confidence 554 5567789999999999999999975599999999999 88874 9999999999999998533 5 48899
Q ss_pred ccccCCCceeecCCCCccceEEEEeeccCccchhhccc-----ccccCCCCcceeEEEeeeccceecCCCCCCCceeeec
Q 000725 1138 LFSKHSEKSSFCPSVGEDSAIWLLVSTISDSDAQHNCM-----SRDCQKNPVRFWRLALLVKNRVILGSPLDPRASAIGA 1212 (1329)
Q Consensus 1138 ~fSgdvn~VsF~P~sGeD~AiwLLVST~Sdd~t~~Dlr-----a~~~~gH~n~~wRLALl~K~siI~Gs~ldpra~afs~ 1212 (1329)
+++. |-|.| +|- +.+|.+-...+.||+. +-...-|+-...+|++ ..
T Consensus 198 pVe~----vl~lp-sgs-----~iasAgGn~vkVWDl~~G~qll~~~~~H~KtVTcL~l-------------------~s 248 (487)
T KOG0310|consen 198 PVES----VLALP-SGS-----LIASAGGNSVKVWDLTTGGQLLTSMFNHNKTVTCLRL-------------------AS 248 (487)
T ss_pred ceee----EEEcC-CCC-----EEEEcCCCeEEEEEecCCceehhhhhcccceEEEEEe-------------------ec
Confidence 8888 99999 333 4456777788889998 2222237777777664 44
Q ss_pred CCCeEEeecCCCeEEEEEccccceeeeeecccCceEEEEEecCCCCceEEEecCCCCCCcccc
Q 000725 1213 SSGLGIIGTNDGLVYAWELSSGNKLGILHHFKGGTVSCIATDDSGLQALAVAGDGPDGGRRQR 1275 (1329)
Q Consensus 1213 SG~~gfaGT~DGlVYmWDLstG~kL~tL~~Heg~rVSCVA~dps~p~~~AsA~d~~d~~~r~~ 1275 (1329)
++..+++|+.||.|+++|+.+=+.+.++.-= + -|-+++++|.+.. ++++ -.||++-++
T Consensus 249 ~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~-~-pvLsiavs~dd~t-~viG--msnGlv~~r 306 (487)
T KOG0310|consen 249 DSTRLLSGSLDRHVKVFDTTNYKVVHSWKYP-G-PVLSIAVSPDDQT-VVIG--MSNGLVSIR 306 (487)
T ss_pred CCceEeecccccceEEEEccceEEEEeeecc-c-ceeeEEecCCCce-EEEe--cccceeeee
Confidence 7799999999999999999999888888654 4 4899999985553 6666 356777666
No 81
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.57 E-value=2e-14 Score=167.58 Aligned_cols=252 Identities=12% Similarity=0.114 Sum_probs=151.6
Q ss_pred ccCCCCcEEEEEecCcceeeeEEEecc-cceeEEEEe--cCCeEEEecCCCeEEEEeccCcc--eEEEeeeee-cCCC-C
Q 000725 985 HRLDENAVKIVKVKPGYVSVVAKLKTD-DCVQCILVC--EPKHLIAVGESGKLHLWEMNSSW--SAQVEECII-PIND-C 1057 (1329)
Q Consensus 985 s~seDNtVKIv~V~~G~vsll~kL~~h-~sV~cIlVc--DpnhLVSaSdDGkL~IWDM~SgW--sm~tee~Vi-~~n~-~ 1057 (1329)
+||-|-|||+|+++.+....+.++-.| +-|.||++. +...+||+|-||+|+|||++++- ...++..+- .+-. |
T Consensus 90 S~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG 169 (735)
T KOG0308|consen 90 SASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSG 169 (735)
T ss_pred EecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCC
Confidence 899999999999999977799999999 999999994 88899999999999999999983 344444322 1111 2
Q ss_pred cccceeEEEecCCCCCeeEecCCCccEEEEEccccceeeeeccCccceeE--ecccc----ccccccCcceEECcchhhh
Q 000725 1058 IYPCIVEMKRIPKCAPLVVGHNGFGEFGIWDISKRVLVSRFSAARASIYQ--FFPIN----LFSWQRNGSVSMDASLELT 1131 (1329)
Q Consensus 1058 v~p~I~elKrFpkss~lIVTgSGDgtf~LWDIskg~llqsF~ahs~sV~s--fsP~~----s~S~d~~v~tfd~~s~d~~ 1131 (1329)
+--+|+.| ++++.+..||+|+.-+-+++||..++..+..+.||++-|-. ++++| +.|=||+|++|+++.-.+.
T Consensus 170 ~k~siYSL-A~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl 248 (735)
T KOG0308|consen 170 PKDSIYSL-AMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCL 248 (735)
T ss_pred Cccceeee-ecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeecccccee
Confidence 33345555 55555555555555555555555555555555555555554 45555 4555555555555544443
Q ss_pred --ccccc-------------cccccCCCc-eeecC---------------------CCCccceEEEEeeccCccchhhcc
Q 000725 1132 --NTATT-------------SLFSKHSEK-SSFCP---------------------SVGEDSAIWLLVSTISDSDAQHNC 1174 (1329)
Q Consensus 1132 --leatv-------------~~fSgdvn~-VsF~P---------------------~sGeD~AiwLLVST~Sdd~t~~Dl 1174 (1329)
...|. +-++|+++. +.-.+ +...|-.+| |+|.+.++.+|-.
T Consensus 249 ~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~W--vtTtds~I~rW~~ 326 (735)
T KOG0308|consen 249 ATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVW--VTTTDSSIKRWKL 326 (735)
T ss_pred eeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCce--eeeccccceecCC
Confidence 01000 011111111 00000 011122333 4477777777655
Q ss_pred cc-------c----ccCCCCcceeEEEeeeccceecCCCCCCCceeeecCCCeEEeecCCCeEEEEEccccceeeeee
Q 000725 1175 MS-------R----DCQKNPVRFWRLALLVKNRVILGSPLDPRASAIGASSGLGIIGTNDGLVYAWELSSGNKLGILH 1241 (1329)
Q Consensus 1175 ra-------~----~~~gH~n~~wRLALl~K~siI~Gs~ldpra~afs~SG~~gfaGT~DGlVYmWDLstG~kL~tL~ 1241 (1329)
+. . .|+-..+... -.++.++.+|=|- ..-.-+++=.+-||+++=.-+|.|-+||++.+.++..+-
T Consensus 327 ~~~~~l~~s~~~~~~~T~~~~~~~-~~~~tp~~vi~Gg-~ai~k~~mL~dkRhVlTkDa~gnv~lwDIl~~~~~~d~g 402 (735)
T KOG0308|consen 327 EPDIALSVSGDLDFFSTDSNNHSC-DLTNTPDSVIPGG-AAIKKHAMLNDKRHVLTKDAKGNVALWDILACVKVEDFG 402 (735)
T ss_pred ccccccccCCCCCcccccCCCccc-cccCCCceeccCc-hhhhhhhhhcCcceEeeecCCCCEEEEEeeeeeehhhcc
Confidence 51 1 1222222222 2345677777765 111123444678999999999999999999999998883
No 82
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.57 E-value=2.8e-14 Score=162.41 Aligned_cols=232 Identities=16% Similarity=0.188 Sum_probs=179.5
Q ss_pred cceeeecCCCcEEEEecCccCccccCCCccccccccccccCCCCcEEEEEecCcceeeeEEEecc-cceeEEEEe--cCC
Q 000725 947 RSCALFTPDGQYLVLLDSMKTPYCREGRSDCLCSTCTSHRLDENAVKIVKVKPGYVSVVAKLKTD-DCVQCILVC--EPK 1023 (1329)
Q Consensus 947 rsglqFTPDGQ~LvLlgsik~p~CR~~~~dC~Cs~C~~s~seDNtVKIv~V~~G~vsll~kL~~h-~sV~cIlVc--Dpn 1023 (1329)
-.++.|--||.+|+ .|.+.+-|||+|.++ ...+-.|.+| ..|+-+-+| |+.
T Consensus 71 v~s~~fR~DG~Lla------------------------aGD~sG~V~vfD~k~--r~iLR~~~ah~apv~~~~f~~~d~t 124 (487)
T KOG0310|consen 71 VYSVDFRSDGRLLA------------------------AGDESGHVKVFDMKS--RVILRQLYAHQAPVHVTKFSPQDNT 124 (487)
T ss_pred eeEEEeecCCeEEE------------------------ccCCcCcEEEecccc--HHHHHHHhhccCceeEEEecccCCe
Confidence 36899999999999 899999999999877 4588899999 999999999 999
Q ss_pred eEEEecCCCeEEEEeccCcceEEEeeeeecCCCCcccceeEEEecCCCCCeeEecCCCccEEEEEcccc-ceeeeeccCc
Q 000725 1024 HLIAVGESGKLHLWEMNSSWSAQVEECIIPINDCIYPCIVEMKRIPKCAPLVVGHNGFGEFGIWDISKR-VLVSRFSAAR 1102 (1329)
Q Consensus 1024 hLVSaSdDGkL~IWDM~SgWsm~tee~Vi~~n~~v~p~I~elKrFpkss~lIVTgSGDgtf~LWDIskg-~llqsF~ahs 1102 (1329)
++++++||+.+++||++++.+ +.+. .+|.-+|-+.--.|-.+|+++||||||++++||+.+. ..+-+|. |+
T Consensus 125 ~l~s~sDd~v~k~~d~s~a~v-~~~l------~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-hg 196 (487)
T KOG0310|consen 125 MLVSGSDDKVVKYWDLSTAYV-QAEL------SGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-HG 196 (487)
T ss_pred EEEecCCCceEEEEEcCCcEE-EEEe------cCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec-CC
Confidence 999999999999999999987 4333 3677777776566778999999999999999999998 6666664 66
Q ss_pred cceeE--ecccc---ccccccCcceEECcchhhh---ccccccccccCCCceeecCCCCccceEEEEeeccCccchhhcc
Q 000725 1103 ASIYQ--FFPIN---LFSWQRNGSVSMDASLELT---NTATTSLFSKHSEKSSFCPSVGEDSAIWLLVSTISDSDAQHNC 1174 (1329)
Q Consensus 1103 ~sV~s--fsP~~---s~S~d~~v~tfd~~s~d~~---leatv~~fSgdvn~VsF~P~sGeD~AiwLLVST~Sdd~t~~Dl 1174 (1329)
-+|=. |.|.| ...=--.|++||+-++-.. +..|.-.|.+ .+|.- | +..||.+++|-..+.||+
T Consensus 197 ~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~qll~~~~~H~KtVTc----L~l~s----~-~~rLlS~sLD~~VKVfd~ 267 (487)
T KOG0310|consen 197 CPVESVLALPSGSLIASAGGNSVKVWDLTTGGQLLTSMFNHNKTVTC----LRLAS----D-STRLLSGSLDRHVKVFDT 267 (487)
T ss_pred CceeeEEEcCCCCEEEEcCCCeEEEEEecCCceehhhhhcccceEEE----EEeec----C-CceEeecccccceEEEEc
Confidence 66666 77775 1112235899999866655 3446666666 66663 5 589999999999999995
Q ss_pred cccccCCCCcceeEEEeeeccceecCCCCCCCceeeecCCCeEEeecCCCeEEEEEcccccee
Q 000725 1175 MSRDCQKNPVRFWRLALLVKNRVILGSPLDPRASAIGASSGLGIIGTNDGLVYAWELSSGNKL 1237 (1329)
Q Consensus 1175 ra~~~~gH~n~~wRLALl~K~siI~Gs~ldpra~afs~SG~~gfaGT~DGlVYmWDLstG~kL 1237 (1329)
. +|+ ..-.|+.. |-.| .+++++.+.++++|-.+|+|-+=+-..+++-
T Consensus 268 t--~~K--vv~s~~~~---------~pvL---siavs~dd~t~viGmsnGlv~~rr~~~k~k~ 314 (487)
T KOG0310|consen 268 T--NYK--VVHSWKYP---------GPVL---SIAVSPDDQTVVIGMSNGLVSIRRREVKKKP 314 (487)
T ss_pred c--ceE--EEEeeecc---------ccee---eEEecCCCceEEEecccceeeeehhhcccCC
Confidence 4 322 23334432 2223 2788889999999999999988755555443
No 83
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.56 E-value=1e-13 Score=162.53 Aligned_cols=252 Identities=13% Similarity=0.146 Sum_probs=197.0
Q ss_pred cccccCCCCcEEEEEecCcceeeeEEEecc-cceeE-EEE--ecCCeEEEecCCCeEEEEeccCcceEEEeeeeecCCCC
Q 000725 982 CTSHRLDENAVKIVKVKPGYVSVVAKLKTD-DCVQC-ILV--CEPKHLIAVGESGKLHLWEMNSSWSAQVEECIIPINDC 1057 (1329)
Q Consensus 982 C~~s~seDNtVKIv~V~~G~vsll~kL~~h-~sV~c-IlV--cDpnhLVSaSdDGkL~IWDM~SgWsm~tee~Vi~~n~~ 1057 (1329)
|-.++|.|+++|+|.-+.+--=..+.+.+| +-+.+ |+. ||+-+|+.+++|++++||-.-..--..++. +
T Consensus 27 ~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~Lk-------g 99 (745)
T KOG0301|consen 27 CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLK-------G 99 (745)
T ss_pred EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhh-------c
Confidence 455999999999999754432223567766 44444 333 478889999999999999977765555666 8
Q ss_pred cccceeEEEecCCCCCeeEecCCCccEEEEEccccceeeeeccCccceeE--ecccc---ccccccCcceEECcchhhhc
Q 000725 1058 IYPCIVEMKRIPKCAPLVVGHNGFGEFGIWDISKRVLVSRFSAARASIYQ--FFPIN---LFSWQRNGSVSMDASLELTN 1132 (1329)
Q Consensus 1058 v~p~I~elKrFpkss~lIVTgSGDgtf~LWDIskg~llqsF~ahs~sV~s--fsP~~---s~S~d~~v~tfd~~s~d~~l 1132 (1329)
|-..+-+| ...+.+. +||||-|.|.++|=+ +++..+..||..+|+. ++|.. ++|-|.+|++|--+...+++
T Consensus 100 H~snVC~l-s~~~~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~~~vTgsaDKtIklWk~~~~l~tf 175 (745)
T KOG0301|consen 100 HKSNVCSL-SIGEDGT-LISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLPENTYVTGSADKTIKLWKGGTLLKTF 175 (745)
T ss_pred cccceeee-ecCCcCc-eEecccccceEEecc--hhhhcccCCcchheeeeeecCCCcEEeccCcceeeeccCCchhhhh
Confidence 99999999 6566566 999999999999976 5677889999999999 77876 88888888888887776666
Q ss_pred cccccccccCCCceeecCCCCccceEEEEeeccCccchhhccc---ccccCCCCcceeEEEeeeccceecCCCCCCCcee
Q 000725 1133 TATTSLFSKHSEKSSFCPSVGEDSAIWLLVSTISDSDAQHNCM---SRDCQKNPVRFWRLALLVKNRVILGSPLDPRASA 1209 (1329)
Q Consensus 1133 eatv~~fSgdvn~VsF~P~sGeD~AiwLLVST~Sdd~t~~Dlr---a~~~~gH~n~~wRLALl~K~siI~Gs~ldpra~a 1209 (1329)
-+|.--|.+ +.+.| | -=+|.-+.+..+++||+. +-++-||.+-.|.++
T Consensus 176 ~gHtD~VRg----L~vl~----~--~~flScsNDg~Ir~w~~~ge~l~~~~ghtn~vYsis------------------- 226 (745)
T KOG0301|consen 176 SGHTDCVRG----LAVLD----D--SHFLSCSNDGSIRLWDLDGEVLLEMHGHTNFVYSIS------------------- 226 (745)
T ss_pred ccchhheee----eEEec----C--CCeEeecCCceEEEEeccCceeeeeeccceEEEEEE-------------------
Confidence 557776777 88888 3 225555666777889995 888999999999965
Q ss_pred eecCCCeEEeecCCCeEEEEEccccceeeeeecccCceEEEEEecCCCCceEEEecCCCCCCccccCCCCCCCCcEEEee
Q 000725 1210 IGASSGLGIIGTNDGLVYAWELSSGNKLGILHHFKGGTVSCIATDDSGLQALAVAGDGPDGGRRQRDPRHGQNDHVRIWK 1289 (1329)
Q Consensus 1210 fs~SG~~gfaGT~DGlVYmWDLstG~kL~tL~~Heg~rVSCVA~dps~p~~~AsA~d~~d~~~r~~~~~~s~D~~VRiW~ 1289 (1329)
...+++++++-++|+++.||+.- .+++.+..=.- .|+|+.+=+.+. +++| +.||-||||.
T Consensus 227 ~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPtt-siWsa~~L~NgD--Ivvg---------------~SDG~VrVfT 286 (745)
T KOG0301|consen 227 MALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTT-SIWSAKVLLNGD--IVVG---------------GSDGRVRVFT 286 (745)
T ss_pred ecCCCCeEEEecCCceEEEeecC--ceEEEEecCcc-ceEEEEEeeCCC--EEEe---------------ccCceEEEEE
Confidence 45788999999999999999865 77777765553 688888775554 6777 6788888888
Q ss_pred eCCC
Q 000725 1290 MDPN 1293 (1329)
Q Consensus 1290 ~~~~ 1293 (1329)
.+++
T Consensus 287 ~~k~ 290 (745)
T KOG0301|consen 287 VDKD 290 (745)
T ss_pred eccc
Confidence 8754
No 84
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.55 E-value=6.5e-14 Score=154.14 Aligned_cols=248 Identities=17% Similarity=0.219 Sum_probs=189.6
Q ss_pred cEEEEE-ecCcce--eeeEEEecc-cceeEEEEe-cCCeEEEecCCCeEEEEeccCcceEEEeeeeecCCCCcccceeEE
Q 000725 991 AVKIVK-VKPGYV--SVVAKLKTD-DCVQCILVC-EPKHLIAVGESGKLHLWEMNSSWSAQVEECIIPINDCIYPCIVEM 1065 (1329)
Q Consensus 991 tVKIv~-V~~G~v--sll~kL~~h-~sV~cIlVc-DpnhLVSaSdDGkL~IWDM~SgWsm~tee~Vi~~n~~v~p~I~el 1065 (1329)
+-|||+ .+.|.+ -++..|.|| ++|=.|..- -...|.++|-|.+-.||-+.||-+..++- ||..++.++
T Consensus 124 tsrivssFk~~t~~~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~-------GH~GSVNsi 196 (481)
T KOG0300|consen 124 TSRIVSSFKDGTVKFRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYT-------GHTGSVNSI 196 (481)
T ss_pred cchheeeecCCceeEeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeec-------ccccceeeE
Confidence 345665 344443 577889999 999999988 55599999999999999999999999988 999999999
Q ss_pred EecCCCCCeeEecCCCccEEEEE------ccc----------------------------------cceeeeeccCccce
Q 000725 1066 KRIPKCAPLVVGHNGFGEFGIWD------ISK----------------------------------RVLVSRFSAARASI 1105 (1329)
Q Consensus 1066 KrFpkss~lIVTgSGDgtf~LWD------Isk----------------------------------g~llqsF~ahs~sV 1105 (1329)
+|.++..|++|+|||++--||- +-+ |..+.+|.+|.+.|
T Consensus 197 -kfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV 275 (481)
T KOG0300|consen 197 -KFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVV 275 (481)
T ss_pred -EeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccce
Confidence 9999999999999999999996 222 23477899999988
Q ss_pred eE--ecccc----ccccccCcceEECcchhhh--ccccccccccCCCceeecCCCCccceEEEEeeccCccchhhccc--
Q 000725 1106 YQ--FFPIN----LFSWQRNGSVSMDASLELT--NTATTSLFSKHSEKSSFCPSVGEDSAIWLLVSTISDSDAQHNCM-- 1175 (1329)
Q Consensus 1106 ~s--fsP~~----s~S~d~~v~tfd~~s~d~~--leatv~~fSgdvn~VsF~P~sGeD~AiwLLVST~Sdd~t~~Dlr-- 1175 (1329)
-+ ..--+ +.|||++-++||+..++.. |.+|-+-..- ++-+| - -..++.|+.+.+-++||+|
T Consensus 276 ~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtH----cstHp----t-QrLVvTsSrDtTFRLWDFRea 346 (481)
T KOG0300|consen 276 SACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTH----CSTHP----T-QRLVVTSSRDTTFRLWDFREA 346 (481)
T ss_pred EehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccc----cccCC----c-ceEEEEeccCceeEeccchhh
Confidence 87 33333 8999999999999999987 4455554443 88888 3 5677778888888999999
Q ss_pred ---ccccCCCCcceeEEEeeeccceecCCCCCCCceeeecCCCeEEeecCCCeEEEEEccccc-eeeeeecccCceEEEE
Q 000725 1176 ---SRDCQKNPVRFWRLALLVKNRVILGSPLDPRASAIGASSGLGIIGTNDGLVYAWELSSGN-KLGILHHFKGGTVSCI 1251 (1329)
Q Consensus 1176 ---a~~~~gH~n~~wRLALl~K~siI~Gs~ldpra~afs~SG~~gfaGT~DGlVYmWDLstG~-kL~tL~~Heg~rVSCV 1251 (1329)
-.-||||.-..-. +.|.. +..+++|+.|.+|++|||-.=+ -|.++..-.- +--|
T Consensus 347 I~sV~VFQGHtdtVTS-------------------~vF~~-dd~vVSgSDDrTvKvWdLrNMRsplATIRtdS~--~NRv 404 (481)
T KOG0300|consen 347 IQSVAVFQGHTDTVTS-------------------VVFNT-DDRVVSGSDDRTVKVWDLRNMRSPLATIRTDSP--ANRV 404 (481)
T ss_pred cceeeeecccccceeE-------------------EEEec-CCceeecCCCceEEEeeeccccCcceeeecCCc--ccee
Confidence 5668888876655 34443 5568899999999999996533 4555544333 4456
Q ss_pred EecCCCCceEEEecCCCCCCccccCCCCCCCCcEEEeeeCCC
Q 000725 1252 ATDDSGLQALAVAGDGPDGGRRQRDPRHGQNDHVRIWKMDPN 1293 (1329)
Q Consensus 1252 A~dps~p~~~AsA~d~~d~~~r~~~~~~s~D~~VRiW~~~~~ 1293 (1329)
|++-.+|. ||+- --|.+||+++|..|
T Consensus 405 avs~g~~i-IAiP---------------hDNRqvRlfDlnG~ 430 (481)
T KOG0300|consen 405 AVSKGHPI-IAIP---------------HDNRQVRLFDLNGN 430 (481)
T ss_pred EeecCCce-EEec---------------cCCceEEEEecCCC
Confidence 77744454 7766 34677888877654
No 85
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.55 E-value=8.7e-14 Score=150.13 Aligned_cols=214 Identities=19% Similarity=0.162 Sum_probs=147.7
Q ss_pred CCcEEEEEec-CcceeeeEEEecccceeEEEEe--cCCeEEEecCCCeEEEEe--ccCcceEEEeeeeecCCCCccccee
Q 000725 989 ENAVKIVKVK-PGYVSVVAKLKTDDCVQCILVC--EPKHLIAVGESGKLHLWE--MNSSWSAQVEECIIPINDCIYPCIV 1063 (1329)
Q Consensus 989 DNtVKIv~V~-~G~vsll~kL~~h~sV~cIlVc--DpnhLVSaSdDGkL~IWD--M~SgWsm~tee~Vi~~n~~v~p~I~ 1063 (1329)
-+.|-|-+++ .+-+-+...|..-+++-+|.|| --+.+++++.||.|+||| |+++ -+.+ .+=|-..|+
T Consensus 37 ~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~-Pi~~-------~kEH~~EV~ 108 (311)
T KOG0277|consen 37 NGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSK-PIHK-------FKEHKREVY 108 (311)
T ss_pred CceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCCCCc-chhH-------HHhhhhheE
Confidence 3677788885 5555667778888999999999 456788899999999999 4443 1111 112556666
Q ss_pred EEEecCCCCCeeEecCCCccEEEEEccccceeeeeccCccceeE--ecccc-----ccccccCcceEECcchhhhccccc
Q 000725 1064 EMKRIPKCAPLVVGHNGFGEFGIWDISKRVLVSRFSAARASIYQ--FFPIN-----LFSWQRNGSVSMDASLELTNTATT 1136 (1329)
Q Consensus 1064 elKrFpkss~lIVTgSGDgtf~LWDIskg~llqsF~ahs~sV~s--fsP~~-----s~S~d~~v~tfd~~s~d~~leatv 1136 (1329)
.+--=+.....++++|-|+|++|||.-..+-+++|.+|.+-||+ |+|-. ++|=|++.++||++.-.+.+.
T Consensus 109 Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~--- 185 (311)
T KOG0277|consen 109 SVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMS--- 185 (311)
T ss_pred EeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeE---
Confidence 65222234567788899999999999999999999999999999 88876 344444444444433322210
Q ss_pred cccccCCCceeecCCCCccceEEEEeeccCccchhhcccccccCCCCcceeEEEeeeccceecCCCCCCCceeeec-CCC
Q 000725 1137 SLFSKHSEKSSFCPSVGEDSAIWLLVSTISDSDAQHNCMSRDCQKNPVRFWRLALLVKNRVILGSPLDPRASAIGA-SSG 1215 (1329)
Q Consensus 1137 ~~fSgdvn~VsF~P~sGeD~AiwLLVST~Sdd~t~~Dlra~~~~gH~n~~wRLALl~K~siI~Gs~ldpra~afs~-SG~ 1215 (1329)
..+.+.=| -.|+.+. .-+
T Consensus 186 ------------------------------------------------------i~ah~~Ei-------l~cdw~ky~~~ 204 (311)
T KOG0277|consen 186 ------------------------------------------------------IEAHNSEI-------LCCDWSKYNHN 204 (311)
T ss_pred ------------------------------------------------------EEecccee-------EeecccccCCc
Confidence 00000000 1133333 335
Q ss_pred eEEeecCCCeEEEEEcccc-ceeeeeecccCceEEEEEecCCCCceEEEecCCCCCCccccCC
Q 000725 1216 LGIIGTNDGLVYAWELSSG-NKLGILHHFKGGTVSCIATDDSGLQALAVAGDGPDGGRRQRDP 1277 (1329)
Q Consensus 1216 ~gfaGT~DGlVYmWDLstG-~kL~tL~~Heg~rVSCVA~dps~p~~~AsA~d~~d~~~r~~~~ 1277 (1329)
.+++|..|++||.||+-.= +.|..|.+|+= .|-.|+.+|....++|+| +-|.|.|||++
T Consensus 205 vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~-AVRkvk~Sph~~~lLaSa--sYDmT~riw~~ 264 (311)
T KOG0277|consen 205 VLATGGVDNLVRGWDIRNLRTPLFELNGHGL-AVRKVKFSPHHASLLASA--SYDMTVRIWDP 264 (311)
T ss_pred EEEecCCCceEEEEehhhccccceeecCCce-EEEEEecCcchhhHhhhc--cccceEEeccc
Confidence 6788999999999999764 56888999998 899999999999889999 34444444444
No 86
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.55 E-value=2.4e-13 Score=160.35 Aligned_cols=268 Identities=11% Similarity=0.130 Sum_probs=214.6
Q ss_pred ccceeeecCCCcEEEEecCccCccccCCCccccccccccccCCCCcEEEEEecCcceeeeEEEecccceeEEEEe-cCCe
Q 000725 946 ERSCALFTPDGQYLVLLDSMKTPYCREGRSDCLCSTCTSHRLDENAVKIVKVKPGYVSVVAKLKTDDCVQCILVC-EPKH 1024 (1329)
Q Consensus 946 ersglqFTPDGQ~LvLlgsik~p~CR~~~~dC~Cs~C~~s~seDNtVKIv~V~~G~vsll~kL~~h~sV~cIlVc-Dpnh 1024 (1329)
+--++.|+.|--.|+ ++ .-+.||||+.+++. .+.|+..- -+.|..++ ..++
T Consensus 375 dVRsl~vS~d~~~~~------------------------Sg-a~~SikiWn~~t~k--ciRTi~~~-y~l~~~Fvpgd~~ 426 (888)
T KOG0306|consen 375 DVRSLCVSSDSILLA------------------------SG-AGESIKIWNRDTLK--CIRTITCG-YILASKFVPGDRY 426 (888)
T ss_pred heeEEEeecCceeee------------------------ec-CCCcEEEEEccCcc--eeEEeccc-cEEEEEecCCCce
Confidence 445788999966666 33 34689999999987 88888766 66777777 8999
Q ss_pred EEEecCCCeEEEEeccCcceEEEeeeeecCCCCcccceeEEEecCCCCCeeEecCCCccEEEEEccccce----------
Q 000725 1025 LIAVGESGKLHLWEMNSSWSAQVEECIIPINDCIYPCIVEMKRIPKCAPLVVGHNGFGEFGIWDISKRVL---------- 1094 (1329)
Q Consensus 1025 LVSaSdDGkL~IWDM~SgWsm~tee~Vi~~n~~v~p~I~elKrFpkss~lIVTgSGDgtf~LWDIskg~l---------- 1094 (1329)
||.+...|.|.|+|++|+-.+-+-. -|-.-|+.+ ...++..-.||||+|.|+++||...=.-
T Consensus 427 Iv~G~k~Gel~vfdlaS~~l~Eti~-------AHdgaIWsi-~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~ls 498 (888)
T KOG0306|consen 427 IVLGTKNGELQVFDLASASLVETIR-------AHDGAIWSI-SLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLS 498 (888)
T ss_pred EEEeccCCceEEEEeehhhhhhhhh-------ccccceeee-eecCCCCceEEecCCcEEEEEeEEEEeccCcccceeee
Confidence 9999999999999999976665555 577889999 8888899999999999999999753211
Q ss_pred --eeeeccCccceeE--ecccc----ccccccCcceEECcchhhh--ccccccccccCCCceeecCCCCccceEEEEeec
Q 000725 1095 --VSRFSAARASIYQ--FFPIN----LFSWQRNGSVSMDASLELT--NTATTSLFSKHSEKSSFCPSVGEDSAIWLLVST 1164 (1329)
Q Consensus 1095 --lqsF~ahs~sV~s--fsP~~----s~S~d~~v~tfd~~s~d~~--leatv~~fSgdvn~VsF~P~sGeD~AiwLLVST 1164 (1329)
.++-=.-.++|.+ ++|++ -+=+|.+|++|-..+-.-. |=+|+.||-. +-.+| | .+-|+.++
T Consensus 499 l~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~s----mDIS~----D-SklivTgS 569 (888)
T KOG0306|consen 499 LKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLS----MDISP----D-SKLIVTGS 569 (888)
T ss_pred eccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeE----EeccC----C-cCeEEecc
Confidence 1122233478888 99999 4457999999999988777 4599999999 88999 8 78889889
Q ss_pred cCccchhhccc----ccccCCCCcceeEEEeeeccceecCCCCCCCceeeecCCCeEEeecCCCeEEEEEccccceeeee
Q 000725 1165 ISDSDAQHNCM----SRDCQKNPVRFWRLALLVKNRVILGSPLDPRASAIGASSGLGIIGTNDGLVYAWELSSGNKLGIL 1240 (1329)
Q Consensus 1165 ~Sdd~t~~Dlr----a~~~~gH~n~~wRLALl~K~siI~Gs~ldpra~afs~SG~~gfaGT~DGlVYmWDLstG~kL~tL 1240 (1329)
++...+.|-+- -+.+-.|.-..-. +-|-|-.-.+|+.+-|+.|+-||=-+=.++.+|
T Consensus 570 ADKnVKiWGLdFGDCHKS~fAHdDSvm~-------------------V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L 630 (888)
T KOG0306|consen 570 ADKNVKIWGLDFGDCHKSFFAHDDSVMS-------------------VQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKL 630 (888)
T ss_pred CCCceEEeccccchhhhhhhcccCceeE-------------------EEEcccceeEEEecCcceEEeechhhhhhheee
Confidence 98888887665 3333344444444 556777778899999999999999999999999
Q ss_pred ecccCceEEEEEecCCCCceEEEecCCCCCCccccCCCCCCCCcEEEeeeCCCc
Q 000725 1241 HHFKGGTVSCIATDDSGLQALAVAGDGPDGGRRQRDPRHGQNDHVRIWKMDPNL 1294 (1329)
Q Consensus 1241 ~~Heg~rVSCVA~dps~p~~~AsA~d~~d~~~r~~~~~~s~D~~VRiW~~~~~~ 1294 (1329)
.+|.. .|+|+|+.|.+.- |.++ |-|.+||+|.+....
T Consensus 631 ~~H~~-ev~cLav~~~G~~-vvs~---------------shD~sIRlwE~tde~ 667 (888)
T KOG0306|consen 631 DGHHS-EVWCLAVSPNGSF-VVSS---------------SHDKSIRLWERTDEI 667 (888)
T ss_pred ccchh-eeeeeEEcCCCCe-EEec---------------cCCceeEeeeccCcc
Confidence 99999 8999999987765 7777 889999999887643
No 87
>PF05965 FYRC: F/Y rich C-terminus; InterPro: IPR003889 The "FY-rich" domain C-terminal region is sometimes closely juxtaposed with the N-terminal region (IPR003888 from INTERPRO), but sometimes is far distant. It is of unknown function, but occurs frequently in chromatin-associated proteins like trithorax and its homologues.; GO: 0005634 nucleus; PDB: 2WZO_A.
Probab=99.54 E-value=2.2e-15 Score=137.30 Aligned_cols=69 Identities=35% Similarity=0.581 Sum_probs=52.6
Q ss_pred CCceEEEecCC--CCcccCCChhhHHHHHHHHhhhhhhhhcC--CCCCCcCCcccccccCCHHHHHHHHHHhhh
Q 000725 74 KGPLFMITSSD--AHSCSGQTPDIAWEKFQKKHCPRMKTWHG--KRLSCKIDGVEFFGFKNSFVQRLLRELVAD 143 (1329)
Q Consensus 74 ~GPLFrVT~dD--Ge~f~G~TPtacW~~V~kr~~~~ik~~~g--~r~s~~iSGpEmFGFSnP~V~rLIqeLp~a 143 (1329)
.+|+|+|+.+| +..|.|.||+.||.+|++++++ +|..++ +.....++|++||||++|.|++|||+||++
T Consensus 2 ~~P~F~Vt~~d~p~~~~~g~s~~~~W~~i~~~v~~-~r~~~~~~~~~~~~isG~~~FGls~p~V~~lie~Lp~a 74 (86)
T PF05965_consen 2 GGPLFEVTSEDDPGEVFEGSSPTEAWSEILERVNE-ARKQSGLLKLPPNSISGPEMFGLSNPAVQRLIESLPGA 74 (86)
T ss_dssp -SEEEEEEETT-GGG-EEESSHHHHHHHHHHHHHH-HHT-------TT----HHHHHSTTSHHHHHHHTTSTTG
T ss_pred CCCEEEEEECCCCCCEEEeCCHHHHHHHHHHHHHH-HHhhccccccCCCCCCHhHhcCCCCHHHHHHHHhCCCc
Confidence 47999999998 7899999999999999999744 666554 346788999999999999999999999665
No 88
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.53 E-value=6.7e-14 Score=159.82 Aligned_cols=237 Identities=17% Similarity=0.205 Sum_probs=195.7
Q ss_pred ccCCCCcEEEEE--ecCcceeeeEEEecc--cceeEEEEecCCeEEEecCCCeEEEEeccCcceEEEeeeeecCCCCccc
Q 000725 985 HRLDENAVKIVK--VKPGYVSVVAKLKTD--DCVQCILVCEPKHLIAVGESGKLHLWEMNSSWSAQVEECIIPINDCIYP 1060 (1329)
Q Consensus 985 s~seDNtVKIv~--V~~G~vsll~kL~~h--~sV~cIlVcDpnhLVSaSdDGkL~IWDM~SgWsm~tee~Vi~~n~~v~p 1060 (1329)
+-++|+.|+||- =++|.|-++.++.+. .+|.|+-.+ .|+||+|+.|+++|||+.+.-+++... .|-.
T Consensus 52 s~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s~S--~y~~sgG~~~~Vkiwdl~~kl~hr~lk-------dh~s 122 (673)
T KOG4378|consen 52 SMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACASQS--LYEISGGQSGCVKIWDLRAKLIHRFLK-------DHQS 122 (673)
T ss_pred ecCCceeEEEecccCCCCccceeeccccchHHHHhhhhcc--eeeeccCcCceeeehhhHHHHHhhhcc-------CCcc
Confidence 667899999996 446778889999888 566665554 999999999999999999988888888 8999
Q ss_pred ceeEEEecCCCCCeeEecCCCccEEEEEccccceeeeeccCccceeE---ecccc-----ccccccCcceEECcchhhh-
Q 000725 1061 CIVEMKRIPKCAPLVVGHNGFGEFGIWDISKRVLVSRFSAARASIYQ---FFPIN-----LFSWQRNGSVSMDASLELT- 1131 (1329)
Q Consensus 1061 ~I~elKrFpkss~lIVTgSGDgtf~LWDIskg~llqsF~ahs~sV~s---fsP~~-----s~S~d~~v~tfd~~s~d~~- 1131 (1329)
.|..| -++..+.+|++++--|.|-|--+.+++...+|.-.++.+.- |+|.. ..+.+|.|++||+-+--..
T Consensus 123 tvt~v-~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~ 201 (673)
T KOG4378|consen 123 TVTYV-DYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIF 201 (673)
T ss_pred eeEEE-EecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCccc
Confidence 99999 99999999999999999999999999999999988776654 77766 6789999999999887666
Q ss_pred --ccccccccccCCCceeecCCCCccceEEEEeecc-CccchhhcccccccCCCCcceeEEEeeeccceecCCCCCCCce
Q 000725 1132 --NTATTSLFSKHSEKSSFCPSVGEDSAIWLLVSTI-SDSDAQHNCMSRDCQKNPVRFWRLALLVKNRVILGSPLDPRAS 1208 (1329)
Q Consensus 1132 --leatv~~fSgdvn~VsF~P~sGeD~AiwLLVST~-Sdd~t~~Dlra~~~~gH~n~~wRLALl~K~siI~Gs~ldpra~ 1208 (1329)
.++|..+-++ ++|+| +-|. ||||-+ +.-+.+||.+++... =||+- -.|| .++
T Consensus 202 ~~~~~HsAP~~g----icfsp-sne~----l~vsVG~Dkki~~yD~~s~~s~------~~l~y--------~~Pl--stv 256 (673)
T KOG4378|consen 202 HASEAHSAPCRG----ICFSP-SNEA----LLVSVGYDKKINIYDIRSQAST------DRLTY--------SHPL--STV 256 (673)
T ss_pred chhhhccCCcCc----ceecC-Cccc----eEEEecccceEEEeeccccccc------ceeee--------cCCc--cee
Confidence 4799999999 99999 3333 555544 444556888855411 13331 1222 579
Q ss_pred eeecCCCeEEeecCCCeEEEEEc-cccceeeeeecccCceEEEEEecCCC
Q 000725 1209 AIGASSGLGIIGTNDGLVYAWEL-SSGNKLGILHHFKGGTVSCIATDDSG 1257 (1329)
Q Consensus 1209 afs~SG~~gfaGT~DGlVYmWDL-stG~kL~tL~~Heg~rVSCVA~dps~ 1257 (1329)
||+.+|.|+++|+..|.||.+|+ .+..-+..+++|.. .|+|||..|+.
T Consensus 257 af~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~-sVt~vafq~s~ 305 (673)
T KOG4378|consen 257 AFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDA-SVTRVAFQPSP 305 (673)
T ss_pred eecCCceEEEeecCCceEEEEecccCCCCceEeeeccc-ceeEEEeeecc
Confidence 99999999999999999999999 56778999999999 89999999774
No 89
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.51 E-value=3.6e-14 Score=166.66 Aligned_cols=256 Identities=14% Similarity=0.170 Sum_probs=212.6
Q ss_pred EEEecc-cceeEEEEe-cCCeEEEecCCCeEEEEeccCcceEEEeeeeecCCCCcccceeEEEecCCCCCeeEecCCCcc
Q 000725 1006 AKLKTD-DCVQCILVC-EPKHLIAVGESGKLHLWEMNSSWSAQVEECIIPINDCIYPCIVEMKRIPKCAPLVVGHNGFGE 1083 (1329)
Q Consensus 1006 ~kL~~h-~sV~cIlVc-DpnhLVSaSdDGkL~IWDM~SgWsm~tee~Vi~~n~~v~p~I~elKrFpkss~lIVTgSGDgt 1083 (1329)
.++-+| ..|.|..+- -.+.++.+|+|-++-+|-..--|.+..++ ||...|-+| +|.-.--+|+.|+.+|+
T Consensus 22 ~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~-------~hespIeSl-~f~~~E~Llaagsasgt 93 (825)
T KOG0267|consen 22 REFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLT-------GHESPIESL-TFDTSERLLAAGSASGT 93 (825)
T ss_pred hhhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheee-------ccCCcceee-ecCcchhhhcccccCCc
Confidence 456678 778888766 88999999999999999999988888877 999999999 99999999999999999
Q ss_pred EEEEEccccceeeeeccCccceeE--ecccc----ccccccCcceEECcchhhh--ccccccccccCCCceeecCCCCcc
Q 000725 1084 FGIWDISKRVLVSRFSAARASIYQ--FFPIN----LFSWQRNGSVSMDASLELT--NTATTSLFSKHSEKSSFCPSVGED 1155 (1329)
Q Consensus 1084 f~LWDIskg~llqsF~ahs~sV~s--fsP~~----s~S~d~~v~tfd~~s~d~~--leatv~~fSgdvn~VsF~P~sGeD 1155 (1329)
|++||++.+..+.++-+|...+.+ |.|-+ .+|.|++..+||..-.-+- +..|.. -++..+|+| |
T Consensus 94 iK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~----vv~~l~lsP----~ 165 (825)
T KOG0267|consen 94 IKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTR----VVDVLRLSP----D 165 (825)
T ss_pred eeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcc----eeEEEeecC----C
Confidence 999999999999999999999998 99988 5889999999998733333 433333 345589999 7
Q ss_pred ceEEEEeeccCccchhhccc----ccccCCCCcceeEEEeeeccceecCCCCCCCceeeecCCCeEEeecCCCeEEEEEc
Q 000725 1156 SAIWLLVSTISDSDAQHNCM----SRDCQKNPVRFWRLALLVKNRVILGSPLDPRASAIGASSGLGIIGTNDGLVYAWEL 1231 (1329)
Q Consensus 1156 ~AiwLLVST~Sdd~t~~Dlr----a~~~~gH~n~~wRLALl~K~siI~Gs~ldpra~afs~SG~~gfaGT~DGlVYmWDL 1231 (1329)
|.|+-+++-+..++.||++ +.+|.+|.....- +.|.+..-++..|+.|++|.+||+
T Consensus 166 -Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~s-------------------le~hp~e~Lla~Gs~d~tv~f~dl 225 (825)
T KOG0267|consen 166 -GRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQS-------------------LEFHPLEVLLAPGSSDRTVRFWDL 225 (825)
T ss_pred -CceeeccCCcceeeeecccccccccccccccccccc-------------------cccCchhhhhccCCCCceeeeecc
Confidence 8999999999999999996 8889999887765 558889999999999999999999
Q ss_pred cccceeeeeecccCceEEEEEecCCCCceEEEecCCCCCCccc--------------cCCCCCCCCcEEEeeeCCCccee
Q 000725 1232 SSGNKLGILHHFKGGTVSCIATDDSGLQALAVAGDGPDGGRRQ--------------RDPRHGQNDHVRIWKMDPNLGCV 1297 (1329)
Q Consensus 1232 stG~kL~tL~~Heg~rVSCVA~dps~p~~~AsA~d~~d~~~r~--------------~~~~~s~D~~VRiW~~~~~~~~~ 1297 (1329)
-|-..++....+.+ -|.|.+++ ++|..++. +.+-+++. |-|.-.-+-.+-.|-+...++-.
T Consensus 226 etfe~I~s~~~~~~-~v~~~~fn---~~~~~~~~-G~q~sl~~~~~a~ah~~~~~~~~Ep~~~~~~vqs~~~~ek~v~v~ 300 (825)
T KOG0267|consen 226 ETFEVISSGKPETD-GVRSLAFN---PDGKIVLS-GEQISLSESRTASAHVRKTLARWEPEMDGAVVQSNSHKEKVVAVG 300 (825)
T ss_pred ceeEEeeccCCccC-Cceeeeec---CCceeeec-CchhhhhhhhcccceeeccccccccccccceeeecCCcccccccc
Confidence 99999999999999 59999999 55555553 35566665 87755556666667666666555
Q ss_pred ecCCC
Q 000725 1298 RNSNG 1302 (1329)
Q Consensus 1298 ~~~~~ 1302 (1329)
|+.-+
T Consensus 301 ~d~~~ 305 (825)
T KOG0267|consen 301 RDPQD 305 (825)
T ss_pred cCccc
Confidence 55433
No 90
>smart00542 FYRC "FY-rich" domain, C-terminal region. is sometimes closely juxtaposed with the N-terminal region (FYRN), but sometimes is far distant. Unknown function, but occurs frequently in chromatin-associated proteins.
Probab=99.51 E-value=1.3e-14 Score=133.89 Aligned_cols=67 Identities=19% Similarity=0.400 Sum_probs=56.3
Q ss_pred eEEEecCC--CCcccCCChhhHHHHHHHHhhhhhhhhcCC-C-CCCcCCcccccccCCHHHHHHHHHHhhhc
Q 000725 77 LFMITSSD--AHSCSGQTPDIAWEKFQKKHCPRMKTWHGK-R-LSCKIDGVEFFGFKNSFVQRLLRELVADI 144 (1329)
Q Consensus 77 LFrVT~dD--Ge~f~G~TPtacW~~V~kr~~~~ik~~~g~-r-~s~~iSGpEmFGFSnP~V~rLIqeLp~a~ 144 (1329)
+|||+.+| |.+|.|.||++||.+|++++ ++.|+.++. + ....+||++||||+||+|++|||+||.+.
T Consensus 1 lF~v~~~~~~~~~~~~~S~~~~W~~vl~~v-~~~r~~~~~~~~~~~~isG~~mFGls~p~V~~lie~Lpga~ 71 (86)
T smart00542 1 LFRVEIESDPDEVFKGESPEKCWEMVLERV-QEARIVARLLQLLPEGVSGEDMFGLSSPAVVKLIEQLPGVH 71 (86)
T ss_pred CeEEEEecCCCCeEEeCCHHHHHHHHHHHH-HHHHHHcccCCCCCCCCCcHHHhCCCcHHHHHHHHhCCCch
Confidence 69998775 78999999999999999997 446665542 2 45679999999999999999999996654
No 91
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.51 E-value=1.1e-12 Score=142.32 Aligned_cols=273 Identities=13% Similarity=0.177 Sum_probs=209.9
Q ss_pred ceeeecCCCcEEEEecCccCccccCCCccccccccccccCCCCcEEEEEecCcceeeeEEEecc-cceeEEEEe-cCCeE
Q 000725 948 SCALFTPDGQYLVLLDSMKTPYCREGRSDCLCSTCTSHRLDENAVKIVKVKPGYVSVVAKLKTD-DCVQCILVC-EPKHL 1025 (1329)
Q Consensus 948 sglqFTPDGQ~LvLlgsik~p~CR~~~~dC~Cs~C~~s~seDNtVKIv~V~~G~vsll~kL~~h-~sV~cIlVc-DpnhL 1025 (1329)
+-++|+-||.+|. +|+.|.+..+|=..-|. .|-+++|| +.|=||-|- |..||
T Consensus 14 TqiKyN~eGDLlF------------------------scaKD~~~~vw~s~nGe--rlGty~GHtGavW~~Did~~s~~l 67 (327)
T KOG0643|consen 14 TQIKYNREGDLLF------------------------SCAKDSTPTVWYSLNGE--RLGTYDGHTGAVWCCDIDWDSKHL 67 (327)
T ss_pred ceEEecCCCcEEE------------------------EecCCCCceEEEecCCc--eeeeecCCCceEEEEEecCCccee
Confidence 3578999999999 99999999999988887 99999999 999999999 99999
Q ss_pred EEecCCCeEEEEeccCcceEEEeeeeecCCCCcccceeEEEecCCCCCeeEec-----CCCccEEEEEcc-------ccc
Q 000725 1026 IAVGESGKLHLWEMNSSWSAQVEECIIPINDCIYPCIVEMKRIPKCAPLVVGH-----NGFGEFGIWDIS-------KRV 1093 (1329)
Q Consensus 1026 VSaSdDGkL~IWDM~SgWsm~tee~Vi~~n~~v~p~I~elKrFpkss~lIVTg-----SGDgtf~LWDIs-------kg~ 1093 (1329)
+++|-|-++++||+.+|=...+.. ....+..+ .|..++++++-. +.-+.+.++||+ .-.
T Consensus 68 iTGSAD~t~kLWDv~tGk~la~~k--------~~~~Vk~~-~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~e 138 (327)
T KOG0643|consen 68 ITGSADQTAKLWDVETGKQLATWK--------TNSPVKRV-DFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEE 138 (327)
T ss_pred eeccccceeEEEEcCCCcEEEEee--------cCCeeEEE-eeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccC
Confidence 999999999999999999998888 22233444 899999998865 456789999998 555
Q ss_pred eeeeeccCccceeE--ecccc----ccccccCcceEECcchhhhccccccccccCCCceeecCCCCccceEEEEeeccCc
Q 000725 1094 LVSRFSAARASIYQ--FFPIN----LFSWQRNGSVSMDASLELTNTATTSLFSKHSEKSSFCPSVGEDSAIWLLVSTISD 1167 (1329)
Q Consensus 1094 llqsF~ahs~sV~s--fsP~~----s~S~d~~v~tfd~~s~d~~leatv~~fSgdvn~VsF~P~sGeD~AiwLLVST~Sd 1167 (1329)
.+-.+-.|.+.+.. ..|.+ +|+=+|.|+.||..++.+... -..-.+..+|..+|+| | ...++.++-+.
T Consensus 139 p~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~-s~~~h~~~Ind~q~s~----d-~T~FiT~s~Dt 212 (327)
T KOG0643|consen 139 PYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVD-SDEEHSSKINDLQFSR----D-RTYFITGSKDT 212 (327)
T ss_pred ceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeee-chhhhccccccccccC----C-cceEEecccCc
Confidence 56667777777777 88887 889999999999999977721 0111333788899999 7 67888888899
Q ss_pred cchhhcccccccCCCCcceeEEEeeeccceecCCCCCCCceeeecCCCeEEeecCCCe--------------EEEEEccc
Q 000725 1168 SDAQHNCMSRDCQKNPVRFWRLALLVKNRVILGSPLDPRASAIGASSGLGIIGTNDGL--------------VYAWELSS 1233 (1329)
Q Consensus 1168 d~t~~Dlra~~~~gH~n~~wRLALl~K~siI~Gs~ldpra~afs~SG~~gfaGT~DGl--------------VYmWDLst 1233 (1329)
..++||.+.=+ ...-|+-- .| -++++++|--.+++.|.--.. -+.+++..
T Consensus 213 takl~D~~tl~----v~Kty~te----------~P--vN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~ 276 (327)
T KOG0643|consen 213 TAKLVDVRTLE----VLKTYTTE----------RP--VNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIF 276 (327)
T ss_pred cceeeecccee----eEEEeeec----------cc--ccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHH
Confidence 99999999332 11112211 11 145677777777776643221 13456666
Q ss_pred cceeeeeecccCceEEEEEecCCCCceEEEecCCCCCCccccCCCCCCCCcEEEeeeCCCc
Q 000725 1234 GNKLGILHHFKGGTVSCIATDDSGLQALAVAGDGPDGGRRQRDPRHGQNDHVRIWKMDPNL 1294 (1329)
Q Consensus 1234 G~kL~tL~~Heg~rVSCVA~dps~p~~~AsA~d~~d~~~r~~~~~~s~D~~VRiW~~~~~~ 1294 (1329)
...+++.++|=| .+-+||+||++-- .|++ +-|+.|||.-.++|.
T Consensus 277 eEEigrvkGHFG-PINsvAfhPdGks-YsSG---------------GEDG~VR~h~Fd~~Y 320 (327)
T KOG0643|consen 277 EEEIGRVKGHFG-PINSVAFHPDGKS-YSSG---------------GEDGYVRLHHFDSNY 320 (327)
T ss_pred HHHhcccccccc-CcceeEECCCCcc-cccC---------------CCCceEEEEEeccch
Confidence 677888899999 8999999977654 6666 778888888777664
No 92
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.50 E-value=2.8e-13 Score=151.41 Aligned_cols=257 Identities=14% Similarity=0.093 Sum_probs=190.2
Q ss_pred CCCCcEEEEEecCcc-eeeeEEEecccceeEEEEecCCeEEEecCCCeEEEEeccCcceEEEeeeeecCCCCcccceeEE
Q 000725 987 LDENAVKIVKVKPGY-VSVVAKLKTDDCVQCILVCEPKHLIAVGESGKLHLWEMNSSWSAQVEECIIPINDCIYPCIVEM 1065 (1329)
Q Consensus 987 seDNtVKIv~V~~G~-vsll~kL~~h~sV~cIlVcDpnhLVSaSdDGkL~IWDM~SgWsm~tee~Vi~~n~~v~p~I~el 1065 (1329)
|-+.+|+|==|..-. -.+++-|...+=|+.|-+. +.||.|++=||.+.|||. .|=+..+.. ||+..|..+
T Consensus 80 SsE~~leIEYv~~~~aP~pl~~~~hdDWVSsv~~~-~~~IltgsYDg~~riWd~-~Gk~~~~~~-------Ght~~ik~v 150 (423)
T KOG0313|consen 80 SSEEILEIEYVEAITAPKPLQCFLHDDWVSSVKGA-SKWILTGSYDGTSRIWDL-KGKSIKTIV-------GHTGPIKSV 150 (423)
T ss_pred ChhheeEEEEEEecCCCCccccccchhhhhhhccc-CceEEEeecCCeeEEEec-CCceEEEEe-------cCCcceeee
Confidence 445556553322211 1455666666888888888 999999999999999995 566777777 888888865
Q ss_pred EecCC--CCCeeEecCCCccEEEEEccccce----eeeeccCccceeE--ecccc----ccccccCcceEECcc------
Q 000725 1066 KRIPK--CAPLVVGHNGFGEFGIWDISKRVL----VSRFSAARASIYQ--FFPIN----LFSWQRNGSVSMDAS------ 1127 (1329)
Q Consensus 1066 KrFpk--ss~lIVTgSGDgtf~LWDIskg~l----lqsF~ahs~sV~s--fsP~~----s~S~d~~v~tfd~~s------ 1127 (1329)
--+.+ ..-++|++|-|.|++||-+..+.. ++...||...|-+ ..+++ ++|||..+++|+...
T Consensus 151 ~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~ 230 (423)
T KOG0313|consen 151 AWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDEL 230 (423)
T ss_pred EEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccc
Confidence 22332 223699999999999999999876 6777799999999 55777 899999999999211
Q ss_pred ----hhhh-----------------ccccccccccCCCceeecCCCCccceEEEEeeccCccchhhcccccccCCCCcce
Q 000725 1128 ----LELT-----------------NTATTSLFSKHSEKSSFCPSVGEDSAIWLLVSTISDSDAQHNCMSRDCQKNPVRF 1186 (1329)
Q Consensus 1128 ----~d~~-----------------leatv~~fSgdvn~VsF~P~sGeD~AiwLLVST~Sdd~t~~Dlra~~~~gH~n~~ 1186 (1329)
.+++ +++|..+|+. |-|.+ +--++.++.+-+++-||+.+-.
T Consensus 231 E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~----V~w~d------~~v~yS~SwDHTIk~WDletg~-------- 292 (423)
T KOG0313|consen 231 ESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSS----VVWSD------ATVIYSVSWDHTIKVWDLETGG-------- 292 (423)
T ss_pred cccchhhhhhhhhhhcccccCceEEecccccceee----EEEcC------CCceEeecccceEEEEEeeccc--------
Confidence 1111 3456666666 88887 4456788888888889998443
Q ss_pred eEEEeeeccceecCCCCCCCceeeecCCCeEEeecCCCeEEEEEccccc---eeeeeecccCceEEEEEecCCCCceEEE
Q 000725 1187 WRLALLVKNRVILGSPLDPRASAIGASSGLGIIGTNDGLVYAWELSSGN---KLGILHHFKGGTVSCIATDDSGLQALAV 1263 (1329)
Q Consensus 1187 wRLALl~K~siI~Gs~ldpra~afs~SG~~gfaGT~DGlVYmWDLstG~---kL~tL~~Heg~rVSCVA~dps~p~~~As 1263 (1329)
. +.+++-+..| ..++.++..++++||+.|.-+.+||=-+|. ...+|-+|+| .|+.|..+|+..--+++
T Consensus 293 -~-----~~~~~~~ksl--~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~n-wVssvkwsp~~~~~~~S 363 (423)
T KOG0313|consen 293 -L-----KSTLTTNKSL--NCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKN-WVSSVKWSPTNEFQLVS 363 (423)
T ss_pred -c-----eeeeecCcce--eEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchh-hhhheecCCCCceEEEE
Confidence 1 1122222211 346778889999999999999999987763 4567889999 99999999999865666
Q ss_pred ecCCCCCCccccCCCCCC
Q 000725 1264 AGDGPDGGRRQRDPRHGQ 1281 (1329)
Q Consensus 1264 A~d~~d~~~r~~~~~~s~ 1281 (1329)
+ +-|+|.|+||+|+.+
T Consensus 364 ~--S~D~t~klWDvRS~k 379 (423)
T KOG0313|consen 364 G--SYDNTVKLWDVRSTK 379 (423)
T ss_pred E--ecCCeEEEEEeccCC
Confidence 5 678888888888777
No 93
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.50 E-value=6.4e-13 Score=146.48 Aligned_cols=237 Identities=16% Similarity=0.256 Sum_probs=178.6
Q ss_pred cceeeecCCCcEEEEecCccCccccCCCccccccccccccCCCCcEEEEEecCcceeeeEEEecc-cceeEEEEe-cCCe
Q 000725 947 RSCALFTPDGQYLVLLDSMKTPYCREGRSDCLCSTCTSHRLDENAVKIVKVKPGYVSVVAKLKTD-DCVQCILVC-EPKH 1024 (1329)
Q Consensus 947 rsglqFTPDGQ~LvLlgsik~p~CR~~~~dC~Cs~C~~s~seDNtVKIv~V~~G~vsll~kL~~h-~sV~cIlVc-Dpnh 1024 (1329)
-.++||++-|.||+ .|..++.|-|||..|=. +-..|.|| ..|+||.|+ |.|.
T Consensus 26 a~~~~Fs~~G~~lA------------------------vGc~nG~vvI~D~~T~~--iar~lsaH~~pi~sl~WS~dgr~ 79 (405)
T KOG1273|consen 26 AECCQFSRWGDYLA------------------------VGCANGRVVIYDFDTFR--IARMLSAHVRPITSLCWSRDGRK 79 (405)
T ss_pred cceEEeccCcceee------------------------eeccCCcEEEEEccccc--hhhhhhccccceeEEEecCCCCE
Confidence 57899999999999 99999999999999944 88899999 999999999 9999
Q ss_pred EEEecCCCeEEEEeccCcceEEEeeeeec----------CCCCc------ccceeEE---E----------------e--
Q 000725 1025 LIAVGESGKLHLWEMNSSWSAQVEECIIP----------INDCI------YPCIVEM---K----------------R-- 1067 (1329)
Q Consensus 1025 LVSaSdDGkL~IWDM~SgWsm~tee~Vi~----------~n~~v------~p~I~el---K----------------r-- 1067 (1329)
|+++|-|-++++||+..|-......|-.| .|+|+ +|.+..+ | .
T Consensus 80 LltsS~D~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~ 159 (405)
T KOG1273|consen 80 LLTSSRDWSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHG 159 (405)
T ss_pred eeeecCCceeEEEeccCCCceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccc
Confidence 99999999999999999887666664432 23331 1222221 0 3
Q ss_pred -cCCCCCeeEecCCCccEEEEEccccceeeeeccCc-cceeE--ecccc----ccccccCcceEECcchhhh-ccccccc
Q 000725 1068 -IPKCAPLVVGHNGFGEFGIWDISKRVLVSRFSAAR-ASIYQ--FFPIN----LFSWQRNGSVSMDASLELT-NTATTSL 1138 (1329)
Q Consensus 1068 -Fpkss~lIVTgSGDgtf~LWDIskg~llqsF~ahs-~sV~s--fsP~~----s~S~d~~v~tfd~~s~d~~-leatv~~ 1138 (1329)
|-+.+.+|++|.+.|.+-+.|-++-.|+++|.--+ ..|-+ |+..+ .-+-|+.||+|+...++-. +.+.+-
T Consensus 160 ~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e- 238 (405)
T KOG1273|consen 160 VFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVE- 238 (405)
T ss_pred cccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcC-
Confidence 88889999999999999999999999999988544 22223 44444 2345777777777665544 211000
Q ss_pred cccCCCceeecCCCCccceEEEEeeccCccchhhcccccccCCCCcceeEEEeeeccceecCCCCCCCceeeecCCCeEE
Q 000725 1139 FSKHSEKSSFCPSVGEDSAIWLLVSTISDSDAQHNCMSRDCQKNPVRFWRLALLVKNRVILGSPLDPRASAIGASSGLGI 1218 (1329)
Q Consensus 1139 fSgdvn~VsF~P~sGeD~AiwLLVST~Sdd~t~~Dlra~~~~gH~n~~wRLALl~K~siI~Gs~ldpra~afs~SG~~gf 1218 (1329)
| --+..|+.-+. .|. .|||+-.|-|++
T Consensus 239 -----------~-----------------~~K~qDvVNk~-------~Wk------------------~ccfs~dgeYv~ 265 (405)
T KOG1273|consen 239 -----------P-----------------EHKLQDVVNKL-------QWK------------------KCCFSGDGEYVC 265 (405)
T ss_pred -----------h-----------------hHHHHHHHhhh-------hhh------------------heeecCCccEEE
Confidence 0 01224544332 454 388999999999
Q ss_pred eecC-CCeEEEEEccccceeeeeecccCceEEEEEecCCCCceEEEe
Q 000725 1219 IGTN-DGLVYAWELSSGNKLGILHHFKGGTVSCIATDDSGLQALAVA 1264 (1329)
Q Consensus 1219 aGT~-DGlVYmWDLstG~kL~tL~~Heg~rVSCVA~dps~p~~~AsA 1264 (1329)
+||- -..+|+||-+.|+-+-.|||-+|....-|+-||..|. +|+-
T Consensus 266 a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~-i~si 311 (405)
T KOG1273|consen 266 AGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPI-IASI 311 (405)
T ss_pred eccccceeEEEEecCCcceeeeecCCchhheeecccccceee-eeec
Confidence 9984 4679999999999999999999878888999999998 4443
No 94
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.50 E-value=2.2e-13 Score=154.77 Aligned_cols=268 Identities=16% Similarity=0.186 Sum_probs=188.5
Q ss_pred ccccccCCCCcEEEEEecCcceeeeEEEecccce--eEEEEecCCeEEEecCCC-eEEEEeccCcceEEEeeeeecCCCC
Q 000725 981 TCTSHRLDENAVKIVKVKPGYVSVVAKLKTDDCV--QCILVCEPKHLIAVGESG-KLHLWEMNSSWSAQVEECIIPINDC 1057 (1329)
Q Consensus 981 ~C~~s~seDNtVKIv~V~~G~vsll~kL~~h~sV--~cIlVcDpnhLVSaSdDG-kL~IWDM~SgWsm~tee~Vi~~n~~ 1057 (1329)
.|.++-.+--.+.+|+.++|. .+-++++-+.- +....-.+.|++|+.-.+ .|++|-..-.-.+. .+ +
T Consensus 9 ~~sssS~d~~~~~~~dl~TGt--~~~~ykg~~~a~~~sl~~l~~~yllsaq~~rp~l~vw~i~k~~~~~-q~-------~ 78 (476)
T KOG0646|consen 9 VCSSSSFDPINCIVWDLRTGT--SLLQYKGSYLAQAASLTALNNEYLLSAQLKRPLLHVWEILKKDQVV-QY-------I 78 (476)
T ss_pred EEeccCCCCcceeEEecCCCc--eeEEecCcccccchhhhhhchhheeeecccCccccccccCchhhhh-hh-------c
Confidence 455555555669999999999 66666666222 223333778988887665 68899876644444 33 4
Q ss_pred cccc-eeEEEecCCCCCeeEecCCCccEEEEEccccceeeeeccCccceeE--ecccc----ccccccCcceEECcchhh
Q 000725 1058 IYPC-IVEMKRIPKCAPLVVGHNGFGEFGIWDISKRVLVSRFSAARASIYQ--FFPIN----LFSWQRNGSVSMDASLEL 1130 (1329)
Q Consensus 1058 v~p~-I~elKrFpkss~lIVTgSGDgtf~LWDIskg~llqsF~ahs~sV~s--fsP~~----s~S~d~~v~tfd~~s~d~ 1130 (1329)
+-|. +.+| .-.++++.+++|.-.|.+-||.+++|.++..++||=-+|++ |+-++ +++-||.|++|.+-+.-.
T Consensus 79 v~Pg~v~al-~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~ 157 (476)
T KOG0646|consen 79 VLPGPVHAL-ASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVS 157 (476)
T ss_pred ccccceeee-ecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecc
Confidence 4443 4456 66778999999999999999999999999999999999999 88888 899999999998765432
Q ss_pred h-----------ccccccccccCCCceeecCCCCccceEEEEeeccCccchhhcccccccCCCCcceeEEEeeeccceec
Q 000725 1131 T-----------NTATTSLFSKHSEKSSFCPSVGEDSAIWLLVSTISDSDAQHNCMSRDCQKNPVRFWRLALLVKNRVIL 1199 (1329)
Q Consensus 1131 ~-----------leatv~~fSgdvn~VsF~P~sGeD~AiwLLVST~Sdd~t~~Dlra~~~~gH~n~~wRLALl~K~siI~ 1199 (1329)
- .-.|.+++.. ....+ .| +-..|+.++.|.+.++||+-... =|. +++|
T Consensus 158 a~~~~~~~p~~~f~~HtlsITD----l~ig~-Gg--~~~rl~TaS~D~t~k~wdlS~g~---------LLl-----ti~f 216 (476)
T KOG0646|consen 158 ADNDHSVKPLHIFSDHTLSITD----LQIGS-GG--TNARLYTASEDRTIKLWDLSLGV---------LLL-----TITF 216 (476)
T ss_pred cccCCCccceeeeccCcceeEE----EEecC-CC--ccceEEEecCCceEEEEEeccce---------eeE-----EEec
Confidence 2 1234444443 33333 22 34578888888888889988663 121 3444
Q ss_pred CCCCCCCceeeecCCCeEEeecCCCeEEEEEccc----------------cceeeeeecccC-ceEEEEEecCCCCceEE
Q 000725 1200 GSPLDPRASAIGASSGLGIIGTNDGLVYAWELSS----------------GNKLGILHHFKG-GTVSCIATDDSGLQALA 1262 (1329)
Q Consensus 1200 Gs~ldpra~afs~SG~~gfaGT~DGlVYmWDLst----------------G~kL~tL~~Heg-~rVSCVA~dps~p~~~A 1262 (1329)
-. -+.+++++|.++.+++|++||.|++-++-+ ++....|-||+| -.|||+|++ -+|..
T Consensus 217 p~--si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais---~Dgtl 291 (476)
T KOG0646|consen 217 PS--SIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAIS---TDGTL 291 (476)
T ss_pred CC--cceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEe---cCccE
Confidence 44 568899999999999999999999987743 334556679988 349999999 44444
Q ss_pred EecCCCCCCccccCCCCCCCCcEEE
Q 000725 1263 VAGDGPDGGRRQRDPRHGQNDHVRI 1287 (1329)
Q Consensus 1263 sA~d~~d~~~r~~~~~~s~D~~VRi 1287 (1329)
..+++-||..+|||+ ..-+.||.
T Consensus 292 LlSGd~dg~VcvWdi--~S~Q~iRt 314 (476)
T KOG0646|consen 292 LLSGDEDGKVCVWDI--YSKQCIRT 314 (476)
T ss_pred EEeeCCCCCEEEEec--chHHHHHH
Confidence 555555666666655 33344443
No 95
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.49 E-value=1.4e-13 Score=167.19 Aligned_cols=289 Identities=16% Similarity=0.114 Sum_probs=214.1
Q ss_pred cccce-eeecCCCcEEEEecCccCccccCCCccccccccccccCCCCcEEEEEecCccee----eeEEEecccceeEEEE
Q 000725 945 LERSC-ALFTPDGQYLVLLDSMKTPYCREGRSDCLCSTCTSHRLDENAVKIVKVKPGYVS----VVAKLKTDDCVQCILV 1019 (1329)
Q Consensus 945 ~ersg-lqFTPDGQ~LvLlgsik~p~CR~~~~dC~Cs~C~~s~seDNtVKIv~V~~G~vs----ll~kL~~h~sV~cIlV 1019 (1329)
+.|++ ++|+|+|.-++-.|.+.=-+=. +-|-+.++-||.+.--+-+ ++..|.....-+++.|
T Consensus 6 ~~Rta~~awSp~~~~~laagt~aq~~D~-------------sfst~~slEifeld~~~~~~dlk~~~s~~s~~rF~kL~W 72 (1049)
T KOG0307|consen 6 LSRTATFAWSPASPPLLAAGTAAQQFDA-------------SFSTSASLEIFELDFSDESSDLKPVGSLQSSNRFNKLAW 72 (1049)
T ss_pred ccccceEEecCCCchhhHHHhhhhcccc-------------ccccccccceeeecccCccccccccccccccccceeeee
Confidence 34554 5789999733334444322211 3366889999987665544 7778888889999999
Q ss_pred e-cCCe----EEEecCCCeEEEEeccCcceEEEeeeeecCCCCcccceeEEEecCCCCC-eeEecCCCccEEEEEccccc
Q 000725 1020 C-EPKH----LIAVGESGKLHLWEMNSSWSAQVEECIIPINDCIYPCIVEMKRIPKCAP-LVVGHNGFGEFGIWDISKRV 1093 (1329)
Q Consensus 1020 c-Dpnh----LVSaSdDGkL~IWDM~SgWsm~tee~Vi~~n~~v~p~I~elKrFpkss~-lIVTgSGDgtf~LWDIskg~ 1093 (1329)
+ =..+ |+.+.+||+|.+||...- ...-++-++...+-|...|..| .|+.... ++++|+.||+|.|||+.+-+
T Consensus 73 ~~~g~~~~GlIaGG~edG~I~ly~p~~~-~~~~~~~~la~~~~h~G~V~gL-DfN~~q~nlLASGa~~geI~iWDlnn~~ 150 (1049)
T KOG0307|consen 73 GSYGSHSHGLIAGGLEDGNIVLYDPASI-IANASEEVLATKSKHTGPVLGL-DFNPFQGNLLASGADDGEILIWDLNKPE 150 (1049)
T ss_pred cccCCCccceeeccccCCceEEecchhh-ccCcchHHHhhhcccCCceeee-eccccCCceeeccCCCCcEEEeccCCcC
Confidence 9 4444 899999999999997763 2222334556666799999999 8887766 99999999999999999944
Q ss_pred eeeee--ccCccceeEecccc-------ccccccCcceEECcchhhh--c-c-ccccccccCCCceeecCCCCccceEEE
Q 000725 1094 LVSRF--SAARASIYQFFPIN-------LFSWQRNGSVSMDASLELT--N-T-ATTSLFSKHSEKSSFCPSVGEDSAIWL 1160 (1329)
Q Consensus 1094 llqsF--~ahs~sV~sfsP~~-------s~S~d~~v~tfd~~s~d~~--l-e-atv~~fSgdvn~VsF~P~sGeD~AiwL 1160 (1329)
.-.++ -+..+.|.+++-.- +.+-.|.+-+||++.-+-. + . .-.+.+|. +.++| |.|..|
T Consensus 151 tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~----l~WhP----~~aTql 222 (1049)
T KOG0307|consen 151 TPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSV----LAWHP----DHATQL 222 (1049)
T ss_pred CCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceee----eeeCC----CCceee
Confidence 33333 11445565544443 6667778889998876433 2 1 11233455 99999 779999
Q ss_pred EeeccCccchh---hccc-----ccccCCCCcceeEEEeeeccceecCCCCCCCceeeecCC-CeEEeecCCCeEEEEEc
Q 000725 1161 LVSTISDSDAQ---HNCM-----SRDCQKNPVRFWRLALLVKNRVILGSPLDPRASAIGASS-GLGIIGTNDGLVYAWEL 1231 (1329)
Q Consensus 1161 LVST~Sdd~t~---~Dlr-----a~~~~gH~n~~wRLALl~K~siI~Gs~ldpra~afs~SG-~~gfaGT~DGlVYmWDL 1231 (1329)
+|.+.+|..-+ ||+| ++.|++|.-+.-.|. -...+ +++++...|+.|+.|+.
T Consensus 223 ~~As~dd~~PviqlWDlR~assP~k~~~~H~~Gilsls-------------------Wc~~D~~lllSsgkD~~ii~wN~ 283 (1049)
T KOG0307|consen 223 LVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLS-------------------WCPQDPRLLLSSGKDNRIICWNP 283 (1049)
T ss_pred eeecCCCCCceeEeecccccCCchhhhcccccceeeec-------------------cCCCCchhhhcccCCCCeeEecC
Confidence 99998887765 9999 888899987764433 23344 88999999999999999
Q ss_pred cccceeeeeecccCceEEEEEecCCCCceEEEecCCCCCCccccCCCCCCCCcEEEeeeC
Q 000725 1232 SSGNKLGILHHFKGGTVSCIATDDSGLQALAVAGDGPDGGRRQRDPRHGQNDHVRIWKMD 1291 (1329)
Q Consensus 1232 stG~kL~tL~~Heg~rVSCVA~dps~p~~~AsA~d~~d~~~r~~~~~~s~D~~VRiW~~~ 1291 (1329)
.||+.|+.|-.-.+ ++.-|...|..|.+||.| |-||.|-|+-..
T Consensus 284 ~tgEvl~~~p~~~n-W~fdv~w~pr~P~~~A~a---------------sfdgkI~I~sl~ 327 (1049)
T KOG0307|consen 284 NTGEVLGELPAQGN-WCFDVQWCPRNPSVMAAA---------------SFDGKISIYSLQ 327 (1049)
T ss_pred CCceEeeecCCCCc-ceeeeeecCCCcchhhhh---------------eeccceeeeeee
Confidence 99999999999777 899999999999999999 777777776554
No 96
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.49 E-value=6.1e-13 Score=146.42 Aligned_cols=266 Identities=13% Similarity=0.155 Sum_probs=194.9
Q ss_pred eeeecCCCcEEEEecCccCccccCCCccccccccccccCCCCcEEEEEecC------------cc----eeeeEEEecc-
Q 000725 949 CALFTPDGQYLVLLDSMKTPYCREGRSDCLCSTCTSHRLDENAVKIVKVKP------------GY----VSVVAKLKTD- 1011 (1329)
Q Consensus 949 glqFTPDGQ~LvLlgsik~p~CR~~~~dC~Cs~C~~s~seDNtVKIv~V~~------------G~----vsll~kL~~h- 1011 (1329)
..+|+|||++++ .||.|-.|||.+|.. |- --++.||--|
T Consensus 117 ~aafs~DG~lvA------------------------TGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~ 172 (430)
T KOG0640|consen 117 AAAFSPDGSLVA------------------------TGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHV 172 (430)
T ss_pred eeeeCCCCcEEE------------------------ccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhcc
Confidence 678999999999 999999999999871 11 1478899999
Q ss_pred cceeEEEEe-cCCeEEEecCCCeEEEEeccCcceEEEeeeeecCCCCcccceeEEEecCCCCCeeEecCCCccEEEEEcc
Q 000725 1012 DCVQCILVC-EPKHLIAVGESGKLHLWEMNSSWSAQVEECIIPINDCIYPCIVEMKRIPKCAPLVVGHNGFGEFGIWDIS 1090 (1329)
Q Consensus 1012 ~sV~cIlVc-DpnhLVSaSdDGkL~IWDM~SgWsm~tee~Vi~~n~~v~p~I~elKrFpkss~lIVTgSGDgtf~LWDIs 1090 (1329)
+.|.|+.+- --..|+|++.|++|+++|..-+ +++.++-++.+. ..+.++ -|.+.+..|+-|----+.+|+||.
T Consensus 173 devn~l~FHPre~ILiS~srD~tvKlFDfsK~-saKrA~K~~qd~----~~vrsi-SfHPsGefllvgTdHp~~rlYdv~ 246 (430)
T KOG0640|consen 173 DEVNDLDFHPRETILISGSRDNTVKLFDFSKT-SAKRAFKVFQDT----EPVRSI-SFHPSGEFLLVGTDHPTLRLYDVN 246 (430)
T ss_pred CcccceeecchhheEEeccCCCeEEEEecccH-HHHHHHHHhhcc----ceeeeE-eecCCCceEEEecCCCceeEEecc
Confidence 999999999 7789999999999999996443 333333222211 134556 899999999999999999999999
Q ss_pred ccceeeee---ccCccceeE--ecccc----ccccccCcceEECcchhhhc---cccccccccCCCceeecCCCCccceE
Q 000725 1091 KRVLVSRF---SAARASIYQ--FFPIN----LFSWQRNGSVSMDASLELTN---TATTSLFSKHSEKSSFCPSVGEDSAI 1158 (1329)
Q Consensus 1091 kg~llqsF---~ahs~sV~s--fsP~~----s~S~d~~v~tfd~~s~d~~l---eatv~~fSgdvn~VsF~P~sGeD~Ai 1158 (1329)
+-||--+- ..|++.|.+ +++.+ ++|.||.|++||--+..+.+ .+|.. + .+-+..|+- + ++
T Consensus 247 T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~g--s-evcSa~Ftk----n-~k 318 (430)
T KOG0640|consen 247 TYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGG--S-EVCSAVFTK----N-GK 318 (430)
T ss_pred ceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCC--c-eeeeEEEcc----C-Ce
Confidence 99994433 468899999 99998 89999999999999988883 22221 1 223366775 7 99
Q ss_pred EEEeeccCccchhhcccccccCCCCcceeEEEeeeccceecCCCCCCCceeeecCCCeEEeecC-CCeEEEEEcccccee
Q 000725 1159 WLLVSTISDSDAQHNCMSRDCQKNPVRFWRLALLVKNRVILGSPLDPRASAIGASSGLGIIGTN-DGLVYAWELSSGNKL 1237 (1329)
Q Consensus 1159 wLLVST~Sdd~t~~Dlra~~~~gH~n~~wRLALl~K~siI~Gs~ldpra~afs~SG~~gfaGT~-DGlVYmWDLstG~kL 1237 (1329)
+||.|..+...++|.+...+ ....|--|..++.+..=-. +.|--...|++.=.+ -+-+--||--++-|+
T Consensus 319 yiLsSG~DS~vkLWEi~t~R----~l~~YtGAg~tgrq~~rtq------AvFNhtEdyVl~pDEas~slcsWdaRtadr~ 388 (430)
T KOG0640|consen 319 YILSSGKDSTVKLWEISTGR----MLKEYTGAGTTGRQKHRTQ------AVFNHTEDYVLFPDEASNSLCSWDARTADRV 388 (430)
T ss_pred EEeecCCcceeeeeeecCCc----eEEEEecCCcccchhhhhh------hhhcCccceEEccccccCceeeccccchhhh
Confidence 99999999999999998655 2333332322222111111 222222222222211 234567999999999
Q ss_pred eee-ecccCceEEEEEecCCCCceEEEe
Q 000725 1238 GIL-HHFKGGTVSCIATDDSGLQALAVA 1264 (1329)
Q Consensus 1238 ~tL-~~Heg~rVSCVA~dps~p~~~AsA 1264 (1329)
..| -+|+| -|-||..+|..|. ...|
T Consensus 389 ~l~slgHn~-a~R~i~HSP~~p~-FmTc 414 (430)
T KOG0640|consen 389 ALLSLGHNG-AVRWIVHSPVEPA-FMTC 414 (430)
T ss_pred hhcccCCCC-CceEEEeCCCCCc-eeee
Confidence 998 59999 7999999999997 7777
No 97
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.48 E-value=3.6e-13 Score=151.81 Aligned_cols=237 Identities=14% Similarity=0.147 Sum_probs=184.6
Q ss_pred eEEEecc-cceeEEEEe-cCCeEEEecCCCeEEEEeccCcce---EEEeeeeecCCCCcccceeEEEecCCCCCeeEecC
Q 000725 1005 VAKLKTD-DCVQCILVC-EPKHLIAVGESGKLHLWEMNSSWS---AQVEECIIPINDCIYPCIVEMKRIPKCAPLVVGHN 1079 (1329)
Q Consensus 1005 l~kL~~h-~sV~cIlVc-DpnhLVSaSdDGkL~IWDM~SgWs---m~tee~Vi~~n~~v~p~I~elKrFpkss~lIVTgS 1079 (1329)
.+.|..| ++|==+-++ ++.||+|||.|-+.+||++.---. ..|.+ +|...+.-+ ++.+++.++++|+
T Consensus 217 ~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlv-------gh~~~V~yi-~wSPDdryLlaCg 288 (519)
T KOG0293|consen 217 WQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLV-------GHSQPVSYI-MWSPDDRYLLACG 288 (519)
T ss_pred hhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeee-------cccCceEEE-EECCCCCeEEecC
Confidence 4567788 999999999 999999999999999999554333 34444 788888888 9999999999999
Q ss_pred CCccEEEEEccccceeeeec-cCccceeE--ecccc----ccccccCcceEECcchhhh--ccccccccccCCCceeecC
Q 000725 1080 GFGEFGIWDISKRVLVSRFS-AARASIYQ--FFPIN----LFSWQRNGSVSMDASLELT--NTATTSLFSKHSEKSSFCP 1150 (1329)
Q Consensus 1080 GDgtf~LWDIskg~llqsF~-ahs~sV~s--fsP~~----s~S~d~~v~tfd~~s~d~~--leatv~~fSgdvn~VsF~P 1150 (1329)
.|..+.+||+.+|.+...|. +|+.+|.+ ..|++ ++|-|+.|-.|++...+.- .+.-.+-+.. ++.++
T Consensus 289 ~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~d----lait~ 364 (519)
T KOG0293|consen 289 FDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHD----LAITY 364 (519)
T ss_pred chHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccccccceeEE----EEEcC
Confidence 99999999999999987775 34677777 99999 8889999999998877766 2333454555 88898
Q ss_pred CCCccceEEEEeeccCccchhhcccccccCCCCcceeEEEeeeccceecCCCCCCCceeeecCCCeEEeecCCCeEEEEE
Q 000725 1151 SVGEDSAIWLLVSTISDSDAQHNCMSRDCQKNPVRFWRLALLVKNRVILGSPLDPRASAIGASSGLGIIGTNDGLVYAWE 1230 (1329)
Q Consensus 1151 ~sGeD~AiwLLVST~Sdd~t~~Dlra~~~~gH~n~~wRLALl~K~siI~Gs~ldpra~afs~SG~~gfaGT~DGlVYmWD 1230 (1329)
| ++|+|..+-+.-+++|++.+.. ...+..-++-|+ .-++|.+|+|...-=.+..|+|||
T Consensus 365 ----D-gk~vl~v~~d~~i~l~~~e~~~---------dr~lise~~~it-------s~~iS~d~k~~LvnL~~qei~LWD 423 (519)
T KOG0293|consen 365 ----D-GKYVLLVTVDKKIRLYNREARV---------DRGLISEEQPIT-------SFSISKDGKLALVNLQDQEIHLWD 423 (519)
T ss_pred ----C-CcEEEEEecccceeeechhhhh---------hhccccccCcee-------EEEEcCCCcEEEEEcccCeeEEee
Confidence 8 9999999999999999998665 222333333333 358899999999999999999999
Q ss_pred ccccceeeeeecccCceE---EEEEecCCCCceEEEecCCCCCCccccCCCCCCCCcEEEeeeC
Q 000725 1231 LSSGNKLGILHHFKGGTV---SCIATDDSGLQALAVAGDGPDGGRRQRDPRHGQNDHVRIWKMD 1291 (1329)
Q Consensus 1231 LstG~kL~tL~~Heg~rV---SCVA~dps~p~~~AsA~d~~d~~~r~~~~~~s~D~~VRiW~~~ 1291 (1329)
+..-+-+....||+-+.- ||.+-.+. .-+|++ |-|+.|+||.-.
T Consensus 424 l~e~~lv~kY~Ghkq~~fiIrSCFgg~~~--~fiaSG---------------SED~kvyIWhr~ 470 (519)
T KOG0293|consen 424 LEENKLVRKYFGHKQGHFIIRSCFGGGND--KFIASG---------------SEDSKVYIWHRI 470 (519)
T ss_pred cchhhHHHHhhcccccceEEEeccCCCCc--ceEEec---------------CCCceEEEEEcc
Confidence 998888888888887543 46555522 224555 566666666543
No 98
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.46 E-value=7.4e-14 Score=150.54 Aligned_cols=214 Identities=12% Similarity=0.121 Sum_probs=168.4
Q ss_pred ccCCCCcEEEEEecCcceeeeEEEecccceeEEEEe-cCCeEEEecCCCeEEEEeccCcceEEEeeeeecCCCCccccee
Q 000725 985 HRLDENAVKIVKVKPGYVSVVAKLKTDDCVQCILVC-EPKHLIAVGESGKLHLWEMNSSWSAQVEECIIPINDCIYPCIV 1063 (1329)
Q Consensus 985 s~seDNtVKIv~V~~G~vsll~kL~~h~sV~cIlVc-DpnhLVSaSdDGkL~IWDM~SgWsm~tee~Vi~~n~~v~p~I~ 1063 (1329)
+++.|=|-|||+.-+|- .++.|+--.=|..++++ |.++|+++|++.-|+|+||+.----+.|+ .+|...|-
T Consensus 76 saaadftakvw~a~tgd--elhsf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~------~ghtg~Ir 147 (334)
T KOG0278|consen 76 SAAADFTAKVWDAVTGD--ELHSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEI------SGHTGGIR 147 (334)
T ss_pred hhcccchhhhhhhhhhh--hhhhhhhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhh------cCCCCcce
Confidence 88999999999999998 89998766999999999 99999999999999999999855555555 56999999
Q ss_pred EEEecCCCCCeeEecCCCccEEEEEccccceeeeeccCccceeE--ecccc---ccccccCcceEECcchhhh--ccccc
Q 000725 1064 EMKRIPKCAPLVVGHNGFGEFGIWDISKRVLVSRFSAARASIYQ--FFPIN---LFSWQRNGSVSMDASLELT--NTATT 1136 (1329)
Q Consensus 1064 elKrFpkss~lIVTgSGDgtf~LWDIskg~llqsF~ahs~sV~s--fsP~~---s~S~d~~v~tfd~~s~d~~--leatv 1136 (1329)
.+ .|--.++.||+...|+++||||+++|+.+|++.-.+ .|.+ +++++ +-++-+.|.-|+..+-++. +.
T Consensus 148 ~v-~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s-~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k--- 222 (334)
T KOG0278|consen 148 TV-LWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNS-PVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYK--- 222 (334)
T ss_pred eE-EEeccCceEEeeccCCceEEEEeccCcEEEEEecCC-CCcceeeccCCCEEEEecCceeEEeccccccceeecc---
Confidence 98 899999999999999999999999999999987543 4555 88888 5566677777777776665 21
Q ss_pred cccccCCCceeecCCCCccceEEEEeeccC-ccchhhcccc----ccc-CCCCcceeEEEeeeccceecCCCCCCCceee
Q 000725 1137 SLFSKHSEKSSFCPSVGEDSAIWLLVSTIS-DSDAQHNCMS----RDC-QKNPVRFWRLALLVKNRVILGSPLDPRASAI 1210 (1329)
Q Consensus 1137 ~~fSgdvn~VsF~P~sGeD~AiwLLVST~S-dd~t~~Dlra----~~~-~gH~n~~wRLALl~K~siI~Gs~ldpra~af 1210 (1329)
+ -.++++.+++| +- =+||..+. --.+.||+.. --| .||+..+.+ +-|
T Consensus 223 ~--P~nV~SASL~P----~k--~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhc-------------------VrF 275 (334)
T KOG0278|consen 223 M--PCNVESASLHP----KK--EFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHC-------------------VRF 275 (334)
T ss_pred C--ccccccccccC----CC--ceEEecCcceEEEEEeccCCceeeecccCCCCceEE-------------------EEE
Confidence 1 11556677777 21 12222222 2233477762 224 788888888 669
Q ss_pred ecCCCeEEeecCCCeEEEEEccccceee
Q 000725 1211 GASSGLGIIGTNDGLVYAWELSSGNKLG 1238 (1329)
Q Consensus 1211 s~SG~~gfaGT~DGlVYmWDLstG~kL~ 1238 (1329)
+|.|-.-++||+||+|.+|-+.-|+.-+
T Consensus 276 SPdGE~yAsGSEDGTirlWQt~~~~~~~ 303 (334)
T KOG0278|consen 276 SPDGELYASGSEDGTIRLWQTTPGKTYG 303 (334)
T ss_pred CCCCceeeccCCCceEEEEEecCCCchh
Confidence 9999999999999999999998887654
No 99
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.46 E-value=2.9e-12 Score=141.27 Aligned_cols=233 Identities=12% Similarity=0.188 Sum_probs=172.7
Q ss_pred ccCCCCcEEEEEecCcceeeeEEEecc-cceeEEEEecCC---eEEEecCCCeEEEEeccCcceEEEeeeeecCCCCccc
Q 000725 985 HRLDENAVKIVKVKPGYVSVVAKLKTD-DCVQCILVCEPK---HLIAVGESGKLHLWEMNSSWSAQVEECIIPINDCIYP 1060 (1329)
Q Consensus 985 s~seDNtVKIv~V~~G~vsll~kL~~h-~sV~cIlVcDpn---hLVSaSdDGkL~IWDM~SgWsm~tee~Vi~~n~~v~p 1060 (1329)
++|.|-||+|||..+-. -+..|--| +++.|+-+.-|. ||.|+++||+|.|||.-+=-...++. .|..
T Consensus 58 SGssDetI~IYDm~k~~--qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK-------~H~~ 128 (362)
T KOG0294|consen 58 SGSSDETIHIYDMRKRK--QLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLK-------AHKG 128 (362)
T ss_pred ccCCCCcEEEEeccchh--hhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeec-------cccc
Confidence 99999999999988844 78888889 999999999666 99999999999999998744445555 7888
Q ss_pred ceeEEEecCCCCCeeEecCCCccEEEEEccccce--eeeeccCccceeEecccc---ccccccCcceEECcchhhhcccc
Q 000725 1061 CIVEMKRIPKCAPLVVGHNGFGEFGIWDISKRVL--VSRFSAARASIYQFFPIN---LFSWQRNGSVSMDASLELTNTAT 1135 (1329)
Q Consensus 1061 ~I~elKrFpkss~lIVTgSGDgtf~LWDIskg~l--lqsF~ahs~sV~sfsP~~---s~S~d~~v~tfd~~s~d~~leat 1135 (1329)
-|..+ .+.+++.+-++=++|+.+++||+-.|.- +-.+ .+-+....|+|-| .-..+..|-+|-+++-...++..
T Consensus 129 ~Vt~l-siHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L-~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~ 206 (362)
T KOG0294|consen 129 QVTDL-SIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNL-KNKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIE 206 (362)
T ss_pred cccee-EecCCCceEEEEcCCceeeeehhhcCccceeecc-CCcceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhh
Confidence 88888 9999999999999999999999998875 2222 1333335577777 23445566677666666554322
Q ss_pred ccccccCCCceeecCCCCccceEEEEeeccCccchhhccc----ccccCCCCcceeEEEeeeccceecCCCCCCCceeee
Q 000725 1136 TSLFSKHSEKSSFCPSVGEDSAIWLLVSTISDSDAQHNCM----SRDCQKNPVRFWRLALLVKNRVILGSPLDPRASAIG 1211 (1329)
Q Consensus 1136 v~~fSgdvn~VsF~P~sGeD~AiwLLVST~Sdd~t~~Dlr----a~~~~gH~n~~wRLALl~K~siI~Gs~ldpra~afs 1211 (1329)
++ .......++ + .--|+|+-.+..+++||-- +-.|.+|.+|+=-++.|.+
T Consensus 207 ~~-----~r~l~~~~l---~-~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~----------------- 260 (362)
T KOG0294|consen 207 NP-----KRILCATFL---D-GSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTN----------------- 260 (362)
T ss_pred cc-----ccceeeeec---C-CceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEec-----------------
Confidence 22 111223331 2 4457777777777777655 7889999999988885443
Q ss_pred cCCCeEEeecCCCeEEEEEccccc-----eeeeeecccCceEEEEEecCC
Q 000725 1212 ASSGLGIIGTNDGLVYAWELSSGN-----KLGILHHFKGGTVSCIATDDS 1256 (1329)
Q Consensus 1212 ~SG~~gfaGT~DGlVYmWDLstG~-----kL~tL~~Heg~rVSCVA~dps 1256 (1329)
+-+-|+++-+.||-|.|||+...+ -|+.+.. |.|.+|+++...
T Consensus 261 ~~~~~lvTaSSDG~I~vWd~~~~~k~~~~~l~e~n~--~~RltCl~~~~~ 308 (362)
T KOG0294|consen 261 PEHEYLVTASSDGFIKVWDIDMETKKRPTLLAELNT--NVRLTCLRVKLE 308 (362)
T ss_pred CCceEEEEeccCceEEEEEccccccCCcceeEEeec--CCccceeeehhh
Confidence 445899999999999999999984 4444444 448889887743
No 100
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.46 E-value=2.2e-12 Score=156.47 Aligned_cols=291 Identities=13% Similarity=0.168 Sum_probs=219.2
Q ss_pred cceeeecCCCcEEEEecCccCccccCCCccccccccccccC--CCCcEEEEEecCcce----------eeeEEEecc-cc
Q 000725 947 RSCALFTPDGQYLVLLDSMKTPYCREGRSDCLCSTCTSHRL--DENAVKIVKVKPGYV----------SVVAKLKTD-DC 1013 (1329)
Q Consensus 947 rsglqFTPDGQ~LvLlgsik~p~CR~~~~dC~Cs~C~~s~s--eDNtVKIv~V~~G~v----------sll~kL~~h-~s 1013 (1329)
.+.+...|||-.++ +|+ .|..++||+...=+. -++.+...| .+
T Consensus 16 IfSIdv~pdg~~~a------------------------TgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~s 71 (942)
T KOG0973|consen 16 IFSIDVHPDGVKFA------------------------TGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGS 71 (942)
T ss_pred EEEEEecCCceeEe------------------------cCCccccccceeeccccccchhhhhhcccchhheeeccccCc
Confidence 67899999999999 777 999999999665431 357788889 99
Q ss_pred eeEEEEe-cCCeEEEecCCCeEEEEeccC---cceEEE-------ee-eeecCCCCcccceeEEEecCCCCCeeEecCCC
Q 000725 1014 VQCILVC-EPKHLIAVGESGKLHLWEMNS---SWSAQV-------EE-CIIPINDCIYPCIVEMKRIPKCAPLVVGHNGF 1081 (1329)
Q Consensus 1014 V~cIlVc-DpnhLVSaSdDGkL~IWDM~S---gWsm~t-------ee-~Vi~~n~~v~p~I~elKrFpkss~lIVTgSGD 1081 (1329)
|.||-|+ |..+|+|+|||+-|.||+-+. +|.... |. -+.....||..-|+.| ...+++.+++++|.|
T Consensus 72 v~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv-~Wsp~~~~lvS~s~D 150 (942)
T KOG0973|consen 72 VNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDV-NWSPDDSLLVSVSLD 150 (942)
T ss_pred eeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCcccee-ccCCCccEEEEeccc
Confidence 9999999 999999999999999999662 443322 00 0111223788889999 899999999999999
Q ss_pred ccEEEEEccccceeeeeccCccceeE--ecccc----ccccccCcceEECcc--hhhh----cc--ccccccccCCCcee
Q 000725 1082 GEFGIWDISKRVLVSRFSAARASIYQ--FFPIN----LFSWQRNGSVSMDAS--LELT----NT--ATTSLFSKHSEKSS 1147 (1329)
Q Consensus 1082 gtf~LWDIskg~llqsF~ahs~sV~s--fsP~~----s~S~d~~v~tfd~~s--~d~~----le--atv~~fSgdvn~Vs 1147 (1329)
.++-|||-.+..++.++.+|...|=. |=|+| +-|-|+++++|.+.+ +++. .+ .....|.+ .+
T Consensus 151 nsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~R----lS 226 (942)
T KOG0973|consen 151 NSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLR----LS 226 (942)
T ss_pred ceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeee----cc
Confidence 99999999999999999999999988 88998 667899999999887 5555 11 23344666 89
Q ss_pred ecCCCCccceEEEEeeccC----ccchhhccc----ccccCCCCcceeEEEeeeccceecCCCCCCCceeeecCCC----
Q 000725 1148 FCPSVGEDSAIWLLVSTIS----DSDAQHNCM----SRDCQKNPVRFWRLALLVKNRVILGSPLDPRASAIGASSG---- 1215 (1329)
Q Consensus 1148 F~P~sGeD~AiwLLVST~S----dd~t~~Dlr----a~~~~gH~n~~wRLALl~K~siI~Gs~ldpra~afs~SG~---- 1215 (1329)
++| | |..|.+.-+- ....+.+.. ..++-||....-.++. +++++=+... -..+..+.
T Consensus 227 WSP----D-G~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrF--nP~lfe~~~~----ng~~~~~~~~y~ 295 (942)
T KOG0973|consen 227 WSP----D-GHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRF--NPKLFERNNK----NGTSTQPNCYYC 295 (942)
T ss_pred cCC----C-cCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEe--ChHHhccccc----cCCccCCCcceE
Confidence 999 6 5444432211 122233333 4567789887777663 5555544422 11222232
Q ss_pred eEEeecCCCeEEEEEccccceeeeeecccCceEEEEEecCCCCceEEEecCCCCCCccccCCCCCCCCcEEEeeeCCC
Q 000725 1216 LGIIGTNDGLVYAWELSSGNKLGILHHFKGGTVSCIATDDSGLQALAVAGDGPDGGRRQRDPRHGQNDHVRIWKMDPN 1293 (1329)
Q Consensus 1216 ~gfaGT~DGlVYmWDLstG~kL~tL~~Heg~rVSCVA~dps~p~~~AsA~d~~d~~~r~~~~~~s~D~~VRiW~~~~~ 1293 (1329)
..++|+.|+.|-+|-+..-+-|--.|..-+..|.-++-+|++-. +-.| |.||+|.+-+..++
T Consensus 296 i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~-Lfac---------------S~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 296 IAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFS-LFAC---------------SLDGTVALIHFEEK 357 (942)
T ss_pred EEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCe-EEEE---------------ecCCeEEEEEcchH
Confidence 57899999999999998888888888777778999999977765 5555 99999999988775
No 101
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.46 E-value=3e-12 Score=145.15 Aligned_cols=289 Identities=18% Similarity=0.224 Sum_probs=206.5
Q ss_pred EEEEEeccccccceEEEEEEeeeCCCCCCCCceeecccccccccc-----cccccccccccceeeecCCCcEEEEecCcc
Q 000725 892 YVCVSCGFLVDKKRTLFIYTVDIQEPRVGNPSCVGHTSVMLPFLK-----DNFGREIALERSCALFTPDGQYLVLLDSMK 966 (1329)
Q Consensus 892 ~IcVlCG~L~~~~r~Lf~Yki~i~~~~~~~p~~vg~t~~llp~~~-----~~~~~~~~~ersglqFTPDGQ~LvLlgsik 966 (1329)
+..++|+...+..-+|=+|--. .++|.+-=|-=+|||..- -++ |..=..=|+|++
T Consensus 137 DnlIl~ar~eddvs~LEvYVyn-----~~e~nlYvHHD~ilpafPLC~ewld~---------~~~~~~~gNyvA------ 196 (463)
T KOG0270|consen 137 DNLILCARNEDDVSYLEVYVYN-----EEEENLYVHHDFILPAFPLCIEWLDH---------GSKSGGAGNYVA------ 196 (463)
T ss_pred CcEEEEeeccCCceEEEEEEEc-----CCCcceeEecceeccCcchhhhhhhc---------CCCCCCCcceEE------
Confidence 4568999999988888666433 344666667777777652 222 222244588999
Q ss_pred CccccCCCccccccccccccCCCCcEEEEEecCcc-eeeeEEEe------------------cc-cceeEEEEe--cCCe
Q 000725 967 TPYCREGRSDCLCSTCTSHRLDENAVKIVKVKPGY-VSVVAKLK------------------TD-DCVQCILVC--EPKH 1024 (1329)
Q Consensus 967 ~p~CR~~~~dC~Cs~C~~s~seDNtVKIv~V~~G~-vsll~kL~------------------~h-~sV~cIlVc--Dpnh 1024 (1329)
-|.-|-.|-||++.-=. +.+..+|- +| +.|..++++ =-+.
T Consensus 197 ------------------iGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nV 258 (463)
T KOG0270|consen 197 ------------------IGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNV 258 (463)
T ss_pred ------------------EeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhcccccee
Confidence 66677789999943200 22444444 68 999999999 4556
Q ss_pred EEEecCCCeEEEEeccCcceEEEeeeeecCCCCcccceeEEEecCCCCCeeEecCCCccEEEEEccccceeeeeccCccc
Q 000725 1025 LIAVGESGKLHLWEMNSSWSAQVEECIIPINDCIYPCIVEMKRIPKCAPLVVGHNGFGEFGIWDISKRVLVSRFSAARAS 1104 (1329)
Q Consensus 1025 LVSaSdDGkL~IWDM~SgWsm~tee~Vi~~n~~v~p~I~elKrFpkss~lIVTgSGDgtf~LWDIskg~llqsF~ahs~s 1104 (1329)
|+|+|-|.+|++|||++|=..++.. -|+-.|..|+-+|.-++.+|+||+|++++|-|++. ..++..
T Consensus 259 LaSgsaD~TV~lWD~~~g~p~~s~~-------~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~-------~~~s~~ 324 (463)
T KOG0270|consen 259 LASGSADKTVKLWDVDTGKPKSSIT-------HHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRD-------PSNSGK 324 (463)
T ss_pred EEecCCCceEEEEEcCCCCcceehh-------hcCCceeEEEecCCCceEEEeccccceEEeeeccC-------ccccCc
Confidence 7899999999999999999988888 88999999988899999999999999999999875 111111
Q ss_pred eeEeccccccccccCcceEECcchhhhccccccccccCCCceeecCCCCccceEEEEeeccCccchhhcccccccCCCCc
Q 000725 1105 IYQFFPINLFSWQRNGSVSMDASLELTNTATTSLFSKHSEKSSFCPSVGEDSAIWLLVSTISDSDAQHNCMSRDCQKNPV 1184 (1329)
Q Consensus 1105 V~sfsP~~s~S~d~~v~tfd~~s~d~~leatv~~fSgdvn~VsF~P~sGeD~AiwLLVST~Sdd~t~~Dlra~~~~gH~n 1184 (1329)
.|. |.+++++|...|- - ---+++||.+...+-+|+|... .
T Consensus 325 ----------~wk---------------------~~g~VEkv~w~~~-s---e~~f~~~tddG~v~~~D~R~~~-----~ 364 (463)
T KOG0270|consen 325 ----------EWK---------------------FDGEVEKVAWDPH-S---ENSFFVSTDDGTVYYFDIRNPG-----K 364 (463)
T ss_pred ----------eEE---------------------eccceEEEEecCC-C---ceeEEEecCCceEEeeecCCCC-----C
Confidence 121 5567778888882 2 2346888999999999999764 5
Q ss_pred ceeEEEeeeccceecCCCCCCCceeeecCCCeEEeecCCCeEEEEEccccc-eeeeeecccCceEEEEEecCCCCceEEE
Q 000725 1185 RFWRLALLVKNRVILGSPLDPRASAIGASSGLGIIGTNDGLVYAWELSSGN-KLGILHHFKGGTVSCIATDDSGLQALAV 1263 (1329)
Q Consensus 1185 ~~wRLALl~K~siI~Gs~ldpra~afs~SG~~gfaGT~DGlVYmWDLstG~-kL~tL~~Heg~rVSCVA~dps~p~~~As 1263 (1329)
-.|.+- +-+.=|-|- +...-.-+++.+|+.|+.|++|++.--+ ++..-+-+.=+|..|-|++|..+..+|.
T Consensus 365 ~vwt~~--AHd~~ISgl------~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~ 436 (463)
T KOG0270|consen 365 PVWTLK--AHDDEISGL------SVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAF 436 (463)
T ss_pred ceeEEE--eccCCcceE------EecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEe
Confidence 566654 233333333 2333334689999999999999986433 2333345555588899999999998998
Q ss_pred ecCCCCCCccccCCCCCCCCcEEEeeeCCCcc
Q 000725 1264 AGDGPDGGRRQRDPRHGQNDHVRIWKMDPNLG 1295 (1329)
Q Consensus 1264 A~d~~d~~~r~~~~~~s~D~~VRiW~~~~~~~ 1295 (1329)
+ |..+-+|||+.--+-+
T Consensus 437 G---------------G~k~~~~vwd~~~~~~ 453 (463)
T KOG0270|consen 437 G---------------GEKAVLRVWDIFTNSP 453 (463)
T ss_pred c---------------CccceEEEeecccChh
Confidence 8 6777888888776654
No 102
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.45 E-value=6.6e-13 Score=146.40 Aligned_cols=263 Identities=16% Similarity=0.207 Sum_probs=183.3
Q ss_pred ccCCCCcEEEEEecCcceeeeEEEecc-cceeEEEEe-cCCeEEEecCCCeEEEEeccCcceEEE---------eeeee-
Q 000725 985 HRLDENAVKIVKVKPGYVSVVAKLKTD-DCVQCILVC-EPKHLIAVGESGKLHLWEMNSSWSAQV---------EECII- 1052 (1329)
Q Consensus 985 s~seDNtVKIv~V~~G~vsll~kL~~h-~sV~cIlVc-DpnhLVSaSdDGkL~IWDM~SgWsm~t---------ee~Vi- 1052 (1329)
+.|.|-|-+||++++|. .+.++.|| ++|.||.|. ...-+.++|.|++-|||..+-.|-++. |+-+-
T Consensus 165 tASADhTA~iWs~Esg~--CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~ 242 (481)
T KOG0300|consen 165 TASADHTARIWSLESGA--CLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEH 242 (481)
T ss_pred ecccccceeEEeecccc--ceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhc
Confidence 78999999999999999 99999999 999999999 777788999999999999776666554 11000
Q ss_pred -----cCCC----Ccccc----eeEEE---------ecCCCCCeeEecCCCccEEEEEccccceeeeeccCccceeE--e
Q 000725 1053 -----PIND----CIYPC----IVEMK---------RIPKCAPLVVGHNGFGEFGIWDISKRVLVSRFSAARASIYQ--F 1108 (1329)
Q Consensus 1053 -----~~n~----~v~p~----I~elK---------rFpkss~lIVTgSGDgtf~LWDIskg~llqsF~ahs~sV~s--f 1108 (1329)
++-+ .-+|. .++++ ...-.++++||+|-|-|--||||++|..++.+.||-.-..- -
T Consensus 243 sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcst 322 (481)
T KOG0300|consen 243 SDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCST 322 (481)
T ss_pred ccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhcccccc
Confidence 1111 11111 22221 44567899999999999999999999999999999766443 3
Q ss_pred cccc----ccccccCcceEECcchhhhccccccccccCCCc---eeecCCCCccceEEEEeeccCccchhhccc-ccccC
Q 000725 1109 FPIN----LFSWQRNGSVSMDASLELTNTATTSLFSKHSEK---SSFCPSVGEDSAIWLLVSTISDSDAQHNCM-SRDCQ 1180 (1329)
Q Consensus 1109 sP~~----s~S~d~~v~tfd~~s~d~~leatv~~fSgdvn~---VsF~P~sGeD~AiwLLVST~Sdd~t~~Dlr-a~~~~ 1180 (1329)
-|.- +.|-|.+.++||.+ +.. +.+.-|.|+-+. +.|.- + | -+..|+.+-+.+.||+| +..
T Consensus 323 HptQrLVvTsSrDtTFRLWDFR--eaI--~sV~VFQGHtdtVTS~vF~~--d-d---~vVSgSDDrTvKvWdLrNMRs-- 390 (481)
T KOG0300|consen 323 HPTQRLVVTSSRDTTFRLWDFR--EAI--QSVAVFQGHTDTVTSVVFNT--D-D---RVVSGSDDRTVKVWDLRNMRS-- 390 (481)
T ss_pred CCcceEEEEeccCceeEeccch--hhc--ceeeeecccccceeEEEEec--C-C---ceeecCCCceEEEeeeccccC--
Confidence 3333 66788888999887 322 223334443333 66664 2 2 34445555566669998 333
Q ss_pred CCCcceeEEEeeeccceecCCCCCCCceeeecCCCeEEeecCCCeEEEEEccccceeeee-----ecccCceEEEEEecC
Q 000725 1181 KNPVRFWRLALLVKNRVILGSPLDPRASAIGASSGLGIIGTNDGLVYAWELSSGNKLGIL-----HHFKGGTVSCIATDD 1255 (1329)
Q Consensus 1181 gH~n~~wRLALl~K~siI~Gs~ldpra~afs~SG~~gfaGT~DGlVYmWDLstG~kL~tL-----~~Heg~rVSCVA~dp 1255 (1329)
-||- |=.-++. +-++++.++..+++--...-|.++|+. |.+|.+| +||..| |+|.|-..
T Consensus 391 -------plAT-----IRtdS~~--NRvavs~g~~iIAiPhDNRqvRlfDln-G~RlaRlPrtsRqgHrRM-V~c~AW~e 454 (481)
T KOG0300|consen 391 -------PLAT-----IRTDSPA--NRVAVSKGHPIIAIPHDNRQVRLFDLN-GNRLARLPRTSRQGHRRM-VTCCAWLE 454 (481)
T ss_pred -------ccee-----eecCCcc--ceeEeecCCceEEeccCCceEEEEecC-CCccccCCccccccccee-eeeeeccc
Confidence 2221 1111211 236778888888888888899999984 8899888 699995 99999874
Q ss_pred CCCceEEEecCCCCCCccccCCCCCCCCcEEEeeeC
Q 000725 1256 SGLQALAVAGDGPDGGRRQRDPRHGQNDHVRIWKMD 1291 (1329)
Q Consensus 1256 s~p~~~AsA~d~~d~~~r~~~~~~s~D~~VRiW~~~ 1291 (1329)
.-|- | -.+.| |-|..|-=|+..
T Consensus 455 ehp~----c--------nLftc--GFDR~v~gW~in 476 (481)
T KOG0300|consen 455 EHPA----C--------NLFTC--GFDRMVAGWKIN 476 (481)
T ss_pred cCcc----c--------ccccc--cccceeeeeEec
Confidence 4431 1 12333 888888888864
No 103
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.45 E-value=4e-12 Score=139.96 Aligned_cols=248 Identities=17% Similarity=0.230 Sum_probs=184.0
Q ss_pred ecc-cceeEEEEe-cCCeEEEecCCCeEEEEec---cCcceEEEeeeeecCCCCcccceeEEE-ecCCCCCeeEecCCCc
Q 000725 1009 KTD-DCVQCILVC-EPKHLIAVGESGKLHLWEM---NSSWSAQVEECIIPINDCIYPCIVEMK-RIPKCAPLVVGHNGFG 1082 (1329)
Q Consensus 1009 ~~h-~sV~cIlVc-DpnhLVSaSdDGkL~IWDM---~SgWsm~tee~Vi~~n~~v~p~I~elK-rFpkss~lIVTgSGDg 1082 (1329)
.+| +=|+||.+- -+|+++++|-|++|.|||. .++|.....- ++|..+|+.+. +-|.-++.|+++|+|+
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~W------rah~~Si~rV~WAhPEfGqvvA~cS~Dr 83 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSW------RAHDGSIWRVVWAHPEFGQVVATCSYDR 83 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeE------EecCCcEEEEEecCccccceEEEEecCC
Confidence 345 779999999 9999999999999999994 4567776655 68999999985 7899999999999999
Q ss_pred cEEEEEccc---------cceeeeeccCccceeE--ecccc------ccccccCcceEECcchhhh----c--c------
Q 000725 1083 EFGIWDISK---------RVLVSRFSAARASIYQ--FFPIN------LFSWQRNGSVSMDASLELT----N--T------ 1133 (1329)
Q Consensus 1083 tf~LWDIsk---------g~llqsF~ahs~sV~s--fsP~~------s~S~d~~v~tfd~~s~d~~----l--e------ 1133 (1329)
|++||.=.. =.+..++..-+.+|+. |.|-. +++.||.+|+|..-+.-.. | |
T Consensus 84 tv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~ 163 (361)
T KOG2445|consen 84 TVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVID 163 (361)
T ss_pred ceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccC
Confidence 999998621 1236677778889998 99987 8899999999998765433 2 1
Q ss_pred ---ccccccccCCCceeecCCCCccceEEEEeeccCccchhhcccccccCCCCcceeEEEeeeccceecCCCCCC-Ccee
Q 000725 1134 ---ATTSLFSKHSEKSSFCPSVGEDSAIWLLVSTISDSDAQHNCMSRDCQKNPVRFWRLALLVKNRVILGSPLDP-RASA 1209 (1329)
Q Consensus 1134 ---atv~~fSgdvn~VsF~P~sGeD~AiwLLVST~Sdd~t~~Dlra~~~~gH~n~~wRLALl~K~siI~Gs~ldp-ra~a 1209 (1329)
.+.++-+. |+..| +..- ---|.||+..+...+=+....+|.-|++++-++|-|. |- -|| |..+
T Consensus 164 pp~~~~~~~~C----vsWn~-sr~~-~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~------d~-~dpI~di~ 230 (361)
T KOG2445|consen 164 PPGKNKQPCFC----VSWNP-SRMH-EPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELP------DH-TDPIRDIS 230 (361)
T ss_pred CcccccCcceE----Eeecc-cccc-CceEEEEcccCCccccceEEEEecCCcceeeeehhcC------CC-CCcceeee
Confidence 24444444 66654 2222 3456677777555554555667777888888888665 21 233 5677
Q ss_pred eecCCC----eEEeecCCCeEEEEEcccc--------------------ceeeeeecccCceEEEEEecCCCCceEEEec
Q 000725 1210 IGASSG----LGIIGTNDGLVYAWELSSG--------------------NKLGILHHFKGGTVSCIATDDSGLQALAVAG 1265 (1329)
Q Consensus 1210 fs~SG~----~gfaGT~DGlVYmWDLstG--------------------~kL~tL~~Heg~rVSCVA~dps~p~~~AsA~ 1265 (1329)
+.|+-+ .++.++.|| |++|-+-.. .+++.|..|++ .|+-+..+=++.. ++++
T Consensus 231 wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~-~VWrv~wNmtGti-LsSt- 306 (361)
T KOG2445|consen 231 WAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNG-EVWRVRWNMTGTI-LSST- 306 (361)
T ss_pred eccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCC-ceEEEEEeeeeeE-Eeec-
Confidence 777654 588999999 999998742 36677889999 7999999955554 5555
Q ss_pred CCCCCCccccCCCCCCCCcEEEeeeCCC
Q 000725 1266 DGPDGGRRQRDPRHGQNDHVRIWKMDPN 1293 (1329)
Q Consensus 1266 d~~d~~~r~~~~~~s~D~~VRiW~~~~~ 1293 (1329)
|.||.||+|++--|
T Consensus 307 --------------GdDG~VRLWkany~ 320 (361)
T KOG2445|consen 307 --------------GDDGCVRLWKANYN 320 (361)
T ss_pred --------------CCCceeeehhhhhh
Confidence 67888888887543
No 104
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.44 E-value=3.6e-12 Score=139.96 Aligned_cols=273 Identities=14% Similarity=0.137 Sum_probs=181.8
Q ss_pred ccceeeecC-CCcEEEEecCccCccccCCCccccccccccccCCCCcEEEEEecC-cceeeeEEEecc-cceeEEEEe-c
Q 000725 946 ERSCALFTP-DGQYLVLLDSMKTPYCREGRSDCLCSTCTSHRLDENAVKIVKVKP-GYVSVVAKLKTD-DCVQCILVC-E 1021 (1329)
Q Consensus 946 ersglqFTP-DGQ~LvLlgsik~p~CR~~~~dC~Cs~C~~s~seDNtVKIv~V~~-G~vsll~kL~~h-~sV~cIlVc-D 1021 (1329)
-.+.|.|+| +..+|+ .+|=||+||||.|+. |.... +....| ..|.|+.|. |
T Consensus 29 sIS~l~FSP~~~~~~~------------------------A~SWD~tVR~wevq~~g~~~~-ka~~~~~~PvL~v~Wsdd 83 (347)
T KOG0647|consen 29 SISALAFSPQADNLLA------------------------AGSWDGTVRIWEVQNSGQLVP-KAQQSHDGPVLDVCWSDD 83 (347)
T ss_pred chheeEeccccCceEE------------------------ecccCCceEEEEEecCCcccc-hhhhccCCCeEEEEEccC
Confidence 367899999 555555 688999999999987 55445 555666 999999999 9
Q ss_pred CCeEEEecCCCeEEEEeccCcceEEEeeeeecCCCCcccceeEEEecCCC--CCeeEecCCCccEEEEEccccceeeeec
Q 000725 1022 PKHLIAVGESGKLHLWEMNSSWSAQVEECIIPINDCIYPCIVEMKRIPKC--APLVVGHNGFGEFGIWDISKRVLVSRFS 1099 (1329)
Q Consensus 1022 pnhLVSaSdDGkL~IWDM~SgWsm~tee~Vi~~n~~v~p~I~elKrFpks--s~lIVTgSGDgtf~LWDIskg~llqsF~ 1099 (1329)
...+.+++-|+++++||+.|+=+++..- |-..|-.+ ++-+. -+.|+|||-|+|++.||.+.-+.+.+..
T Consensus 84 gskVf~g~~Dk~~k~wDL~S~Q~~~v~~--------Hd~pvkt~-~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~ 154 (347)
T KOG0647|consen 84 GSKVFSGGCDKQAKLWDLASGQVSQVAA--------HDAPVKTC-HWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ 154 (347)
T ss_pred CceEEeeccCCceEEEEccCCCeeeeee--------cccceeEE-EEecCCCcceeEecccccceeecccCCCCeeeeee
Confidence 9999999999999999999997766654 44445555 44333 4589999999999999999999999888
Q ss_pred cCccceeE---ecccc-ccccccCcceEECcchhhhccccccccccCCCceeecCCCCccceEEEEeeccCccchhhccc
Q 000725 1100 AARASIYQ---FFPIN-LFSWQRNGSVSMDASLELTNTATTSLFSKHSEKSSFCPSVGEDSAIWLLVSTISDSDAQHNCM 1175 (1329)
Q Consensus 1100 ahs~sV~s---fsP~~-s~S~d~~v~tfd~~s~d~~leatv~~fSgdvn~VsF~P~sGeD~AiwLLVST~Sdd~t~~Dlr 1175 (1329)
-|. -||+ +-|-- -.--++.|.+|.+.+.--.......+.--..-.|+.++ ..+.+ ++++.-.-...+.+.
T Consensus 155 LPe-RvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~-d~~~~----alGsiEGrv~iq~id 228 (347)
T KOG0647|consen 155 LPE-RVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQ-DKDGF----ALGSIEGRVAIQYID 228 (347)
T ss_pred ccc-eeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEe-cCCce----EeeeecceEEEEecC
Confidence 663 4455 33322 22345667777774443321111222222333466666 33333 334433322222211
Q ss_pred c-cccCCCCcceeEEEeeeccceecCCCCCCCceeeecCCCeEEeecCCCeEEEEEccccceeeeeecccCceEEEEEec
Q 000725 1176 S-RDCQKNPVRFWRLALLVKNRVILGSPLDPRASAIGASSGLGIIGTNDGLVYAWELSSGNKLGILHHFKGGTVSCIATD 1254 (1329)
Q Consensus 1176 a-~~~~gH~n~~wRLALl~K~siI~Gs~ldpra~afs~SG~~gfaGT~DGlVYmWDLstG~kL~tL~~Heg~rVSCVA~d 1254 (1329)
- +.-+.-+=++.|=+-. +.+....=+..+|-|-=+++++-+.||+..+||-..-+||-+-+-|.. .|+|-+++
T Consensus 229 ~~~~~~nFtFkCHR~~~~-----~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~q-pItcc~fn 302 (347)
T KOG0647|consen 229 DPNPKDNFTFKCHRSTNS-----VNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQ-PITCCSFN 302 (347)
T ss_pred CCCccCceeEEEeccCCC-----CCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCC-ccceeEec
Confidence 0 0000111112221000 001111114589999999999999999999999999999999999998 89999999
Q ss_pred CCCCceEEEec
Q 000725 1255 DSGLQALAVAG 1265 (1329)
Q Consensus 1255 ps~p~~~AsA~ 1265 (1329)
-++.. +|.|.
T Consensus 303 ~~G~i-faYA~ 312 (347)
T KOG0647|consen 303 RNGSI-FAYAL 312 (347)
T ss_pred CCCCE-EEEEe
Confidence 88887 77774
No 105
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.43 E-value=5.8e-12 Score=142.79 Aligned_cols=252 Identities=13% Similarity=0.097 Sum_probs=198.4
Q ss_pred ccCCCCcEEEEEecCcceeeeEEEecc-cceeEEEEe-cCCeEEEecCCCeEEEEeccCcceEEEeeeeecCCCCcccce
Q 000725 985 HRLDENAVKIVKVKPGYVSVVAKLKTD-DCVQCILVC-EPKHLIAVGESGKLHLWEMNSSWSAQVEECIIPINDCIYPCI 1062 (1329)
Q Consensus 985 s~seDNtVKIv~V~~G~vsll~kL~~h-~sV~cIlVc-DpnhLVSaSdDGkL~IWDM~SgWsm~tee~Vi~~n~~v~p~I 1062 (1329)
.++.|+++-+.+-.++. ++.+|+|| -.|..+... +..-+.++|-|-.|.||-+...-.-.... ||-..+
T Consensus 236 TGG~d~~av~~d~~s~q--~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~-------~h~~~V 306 (506)
T KOG0289|consen 236 TGGEDKTAVLFDKPSNQ--ILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSR-------PHEEPV 306 (506)
T ss_pred ecCCCCceEEEecchhh--hhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccc-------cccccc
Confidence 79999999999999988 99999999 888888888 99999999999999999987765444444 788888
Q ss_pred eEEEecCCCCCeeEecCCCccEEEEEccccceeeeeccCcc--ceeE--ecccc----ccccccCcceEECcchhhh--c
Q 000725 1063 VEMKRIPKCAPLVVGHNGFGEFGIWDISKRVLVSRFSAARA--SIYQ--FFPIN----LFSWQRNGSVSMDASLELT--N 1132 (1329)
Q Consensus 1063 ~elKrFpkss~lIVTgSGDgtf~LWDIskg~llqsF~ahs~--sV~s--fsP~~----s~S~d~~v~tfd~~s~d~~--l 1132 (1329)
+.+ -..+.+.++|+.|-||+.+.-|+++|.++.....-++ .+.+ |-||| +++-|+.+++|++.+.... .
T Consensus 307 ~~l-s~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~F 385 (506)
T KOG0289|consen 307 TGL-SLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKF 385 (506)
T ss_pred eee-eeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccC
Confidence 888 8888899999999999999999999999766655333 2344 99999 8999999999999998855 3
Q ss_pred cccccccccCCCceeecCCCCccceEEEEeeccCccchhhccc-ccccCCCCcceeEEEeeeccceecCCCCCCCceeee
Q 000725 1133 TATTSLFSKHSEKSSFCPSVGEDSAIWLLVSTISDSDAQHNCM-SRDCQKNPVRFWRLALLVKNRVILGSPLDPRASAIG 1211 (1329)
Q Consensus 1133 eatv~~fSgdvn~VsF~P~sGeD~AiwLLVST~Sdd~t~~Dlr-a~~~~gH~n~~wRLALl~K~siI~Gs~ldpra~afs 1211 (1329)
..|..++.. ++|.- . |-||.+.+.+....|||+| +.-|. -+.+. .|. |. .+++|.
T Consensus 386 pght~~vk~----i~FsE----N-GY~Lat~add~~V~lwDLRKl~n~k-----t~~l~--~~~----~v----~s~~fD 441 (506)
T KOG0289|consen 386 PGHTGPVKA----ISFSE----N-GYWLATAADDGSVKLWDLRKLKNFK-----TIQLD--EKK----EV----NSLSFD 441 (506)
T ss_pred CCCCCceeE----EEecc----C-ceEEEEEecCCeEEEEEehhhcccc-----eeecc--ccc----cc----eeEEEc
Confidence 455565555 99984 6 9999998888889999999 33211 11111 111 22 568999
Q ss_pred cCCCeEEeecCCCeEEEEEcccc--ceeeeeecccCceEEEEEecCCCCceEEEecCCCCCCccc
Q 000725 1212 ASSGLGIIGTNDGLVYAWELSSG--NKLGILHHFKGGTVSCIATDDSGLQALAVAGDGPDGGRRQ 1274 (1329)
Q Consensus 1212 ~SG~~gfaGT~DGlVYmWDLstG--~kL~tL~~Heg~rVSCVA~dps~p~~~AsA~d~~d~~~r~ 1274 (1329)
.+|.|+++|++|=.||..+-.|. +++..++-|.| -+++|.+- ......|+++-|-.+|+
T Consensus 442 ~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg-~st~v~Fg---~~aq~l~s~smd~~l~~ 502 (506)
T KOG0289|consen 442 QSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSG-LSTGVRFG---EHAQYLASTSMDAILRL 502 (506)
T ss_pred CCCCeEEeecceeEEEEEecccccceeeehhhhccc-ccceeeec---ccceEEeeccchhheEE
Confidence 99999999999999999986655 57788889998 69999998 32234444434444443
No 106
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=1.2e-11 Score=135.85 Aligned_cols=255 Identities=12% Similarity=0.091 Sum_probs=197.0
Q ss_pred cceeEEEEe-cCCeEEEecCCCeEEEEeccCcceEEEeeeeecCCCCcccceeEEEecCCCCCeeEecCC--CccEEEEE
Q 000725 1012 DCVQCILVC-EPKHLIAVGESGKLHLWEMNSSWSAQVEECIIPINDCIYPCIVEMKRIPKCAPLVVGHNG--FGEFGIWD 1088 (1329)
Q Consensus 1012 ~sV~cIlVc-DpnhLVSaSdDGkL~IWDM~SgWsm~tee~Vi~~n~~v~p~I~elKrFpkss~lIVTgSG--Dgtf~LWD 1088 (1329)
..+.+|-+. +..+|+++++|-.|.|+|+.++-..++-. |.--.+--+ +|--.++-++-+|- |-+|+.-+
T Consensus 15 ~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~-------skkyG~~~~-~Fth~~~~~i~sStk~d~tIryLs 86 (311)
T KOG1446|consen 15 GKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTIN-------SKKYGVDLA-CFTHHSNTVIHSSTKEDDTIRYLS 86 (311)
T ss_pred CceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEee-------cccccccEE-EEecCCceEEEccCCCCCceEEEE
Confidence 789999999 99999999999999999999999888887 532333344 78877888887777 99999999
Q ss_pred ccccceeeeeccCccceeE--ecccc----ccccccCcceEECcchhhh-ccccccccccCCCceeecCCCCccceEEEE
Q 000725 1089 ISKRVLVSRFSAARASIYQ--FFPIN----LFSWQRNGSVSMDASLELT-NTATTSLFSKHSEKSSFCPSVGEDSAIWLL 1161 (1329)
Q Consensus 1089 Iskg~llqsF~ahs~sV~s--fsP~~----s~S~d~~v~tfd~~s~d~~-leatv~~fSgdvn~VsF~P~sGeD~AiwLL 1161 (1329)
+...+.|.-|.||...|.+ .+|.+ +.|.|++|+.||.+.-.++ +. . .. ...-.+|-| . |.-+.
T Consensus 87 l~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l-~---~~-~~pi~AfDp----~-GLifA 156 (311)
T KOG1446|consen 87 LHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLL-N---LS-GRPIAAFDP----E-GLIFA 156 (311)
T ss_pred eecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEE-e---cC-CCcceeECC----C-CcEEE
Confidence 9999999999999999999 89998 8999999999999977766 21 0 11 233477999 4 66666
Q ss_pred eeccCccchhhccccc------ccCC--CCcceeEEEeeeccceecCCCCCCCceeeecCCCeEEeecCCCeEEEEEccc
Q 000725 1162 VSTISDSDAQHNCMSR------DCQK--NPVRFWRLALLVKNRVILGSPLDPRASAIGASSGLGIIGTNDGLVYAWELSS 1233 (1329)
Q Consensus 1162 VST~Sdd~t~~Dlra~------~~~g--H~n~~wRLALl~K~siI~Gs~ldpra~afs~SG~~gfaGT~DGlVYmWDLst 1233 (1329)
++..++.+++||+|.- +|.. .....|. ..-||++|+++..+|+.+-+|+-|-=+
T Consensus 157 ~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~------------------~l~FS~dGK~iLlsT~~s~~~~lDAf~ 218 (311)
T KOG1446|consen 157 LANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWT------------------DLEFSPDGKSILLSTNASFIYLLDAFD 218 (311)
T ss_pred EecCCCeEEEEEecccCCCCceeEccCCCCcccee------------------eeEEcCCCCEEEEEeCCCcEEEEEccC
Confidence 8888889999999933 2222 2334443 367999999999999999999999999
Q ss_pred cceeeeeecccCce---EEEEEecCCCCceEEEecCCCCCCccccCCCCCCCCcEEEeeeCCCcceeecCCCCcccceE
Q 000725 1234 GNKLGILHHFKGGT---VSCIATDDSGLQALAVAGDGPDGGRRQRDPRHGQNDHVRIWKMDPNLGCVRNSNGDSKFKQF 1309 (1329)
Q Consensus 1234 G~kL~tL~~Heg~r---VSCVA~dps~p~~~AsA~d~~d~~~r~~~~~~s~D~~VRiW~~~~~~~~~~~~~~~~~~~~~ 1309 (1329)
|+.++++..|.+.- +++ .+.|...- +=+++.||++-+|.- ....+|..|.-. |.|=++..+=..++-+|
T Consensus 219 G~~~~tfs~~~~~~~~~~~a-~ftPds~F---vl~gs~dg~i~vw~~--~tg~~v~~~~~~-~~~~~~~~~fnP~~~mf 290 (311)
T KOG1446|consen 219 GTVKSTFSGYPNAGNLPLSA-TFTPDSKF---VLSGSDDGTIHVWNL--ETGKKVAVLRGP-NGGPVSCVRFNPRYAMF 290 (311)
T ss_pred CcEeeeEeeccCCCCcceeE-EECCCCcE---EEEecCCCcEEEEEc--CCCcEeeEecCC-CCCCccccccCCceeee
Confidence 99999999888743 233 34544443 333467899999988 667888888775 55544443344555555
No 107
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.43 E-value=8.2e-12 Score=149.89 Aligned_cols=259 Identities=12% Similarity=0.164 Sum_probs=192.1
Q ss_pred cceeeecCCCcEEEEecCccCccccCCCccccccccccccCCCCcEEEEEecCcceeeeEEEecc-cceeEEEEecCCeE
Q 000725 947 RSCALFTPDGQYLVLLDSMKTPYCREGRSDCLCSTCTSHRLDENAVKIVKVKPGYVSVVAKLKTD-DCVQCILVCEPKHL 1025 (1329)
Q Consensus 947 rsglqFTPDGQ~LvLlgsik~p~CR~~~~dC~Cs~C~~s~seDNtVKIv~V~~G~vsll~kL~~h-~sV~cIlVcDpnhL 1025 (1329)
-..|.|+|||.+|+ +|+.|+-||+|+...-.-++-+... + ..|.||.. ..+|+
T Consensus 16 ~t~i~~d~~gefi~------------------------tcgsdg~ir~~~~~sd~e~P~ti~~-~g~~v~~ia~-~s~~f 69 (933)
T KOG1274|consen 16 LTLICYDPDGEFIC------------------------TCGSDGDIRKWKTNSDEEEPETIDI-SGELVSSIAC-YSNHF 69 (933)
T ss_pred eEEEEEcCCCCEEE------------------------EecCCCceEEeecCCcccCCchhhc-cCceeEEEee-cccce
Confidence 56789999999999 9999999999998774323332222 4 56666654 56699
Q ss_pred EEecCCCeEEEEeccCcceE-EEeeeeecCCCCcccceeEEEecCCCCCeeEecCCCccEEEEEccccceeeeeccCccc
Q 000725 1026 IAVGESGKLHLWEMNSSWSA-QVEECIIPINDCIYPCIVEMKRIPKCAPLVVGHNGFGEFGIWDISKRVLVSRFSAARAS 1104 (1329)
Q Consensus 1026 VSaSdDGkL~IWDM~SgWsm-~tee~Vi~~n~~v~p~I~elKrFpkss~lIVTgSGDgtf~LWDIskg~llqsF~ahs~s 1104 (1329)
++++++++++++..+++--- -...|-.|.+. + .|.-++.+|+.||-|-.+.+=++....-...+.+|.+.
T Consensus 70 ~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~--------~-~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~ap 140 (933)
T KOG1274|consen 70 LTGSEQNTVLRYKFPSGEEDTILARFTLPIRD--------L-AVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAP 140 (933)
T ss_pred EEeeccceEEEeeCCCCCccceeeeeeccceE--------E-EEecCCcEEEeecCceeEEEEeccccchheeecccCCc
Confidence 99999999999998886544 22233344444 3 89999999999999999999999999999999999999
Q ss_pred eeE--ecccc----ccccccCcceEECcchhhh--cc--ccccccc--cCCCceeecCCCCccceEEEEeeccCccchh-
Q 000725 1105 IYQ--FFPIN----LFSWQRNGSVSMDASLELT--NT--ATTSLFS--KHSEKSSFCPSVGEDSAIWLLVSTISDSDAQ- 1171 (1329)
Q Consensus 1105 V~s--fsP~~----s~S~d~~v~tfd~~s~d~~--le--atv~~fS--gdvn~VsF~P~sGeD~AiwLLVST~Sdd~t~- 1171 (1329)
|.+ |.|.+ ..+.||.+.+|++.++.+. +. +..-.|. +=....+|+| +=+.|+++++. +....
T Consensus 141 Vl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~P----k~g~la~~~~d-~~Vkvy 215 (933)
T KOG1274|consen 141 VLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHP----KGGTLAVPPVD-NTVKVY 215 (933)
T ss_pred eeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecC----CCCeEEeeccC-CeEEEE
Confidence 999 99998 6788999999999998887 31 1111121 2334589999 54777776654 34444
Q ss_pred --------hcccccccCCCCcceeEEEeeeccceecCCCCCCCceeeecCCCeEEeecCCCeEEEEEccccceeeeeecc
Q 000725 1172 --------HNCMSRDCQKNPVRFWRLALLVKNRVILGSPLDPRASAIGASSGLGIIGTNDGLVYAWELSSGNKLGILHHF 1243 (1329)
Q Consensus 1172 --------~Dlra~~~~gH~n~~wRLALl~K~siI~Gs~ldpra~afs~SG~~gfaGT~DGlVYmWDLstG~kL~tL~~H 1243 (1329)
|+||.+. |+.. + ..+.++|+|.|+++|+-||.|-+||+-|..+ |-+
T Consensus 216 ~r~~we~~f~Lr~~~---~ss~-~------------------~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~----~~~ 269 (933)
T KOG1274|consen 216 SRKGWELQFKLRDKL---SSSK-F------------------SDLQWSPNGKYIAASTLDGQILVWNVDTHER----HEF 269 (933)
T ss_pred ccCCceeheeecccc---cccc-e------------------EEEEEcCCCcEEeeeccCCcEEEEecccchh----ccc
Confidence 3333333 1111 1 2378999999999999999999999999444 778
Q ss_pred cCceEEEEEecCCCCceEEEecCCCCCCcccc
Q 000725 1244 KGGTVSCIATDDSGLQALAVAGDGPDGGRRQR 1275 (1329)
Q Consensus 1244 eg~rVSCVA~dps~p~~~AsA~d~~d~~~r~~ 1275 (1329)
.. +|.|+|-.|..+.-.... |.|++-+|
T Consensus 270 ~~-~Vc~~aw~p~~n~it~~~---~~g~~~~~ 297 (933)
T KOG1274|consen 270 KR-AVCCEAWKPNANAITLIT---ALGTLGVS 297 (933)
T ss_pred cc-eeEEEecCCCCCeeEEEe---eccccccC
Confidence 88 899999998877522222 55655555
No 108
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.42 E-value=5.9e-12 Score=140.55 Aligned_cols=276 Identities=14% Similarity=0.134 Sum_probs=207.2
Q ss_pred ceeeeecccccceeeeeeccCCeEEEEEEeccccccceEEEEEEeeeCCCCCCCCceeeccccccccccccccccccccc
Q 000725 868 DLMGCYFFPLPILSVLLSTTGDKIYVCVSCGFLVDKKRTLFIYTVDIQEPRVGNPSCVGHTSVMLPFLKDNFGREIALER 947 (1329)
Q Consensus 868 ~l~g~y~HpmpVlsv~l~t~~~ei~IcVlCG~L~~~~r~Lf~Yki~i~~~~~~~p~~vg~t~~llp~~~~~~~~~~~~er 947 (1329)
-+|+=..|-=||.+|.|+- ++-+ |+ ...-+---|++++.--+. .-...|| |+. -
T Consensus 56 S~~tF~~H~~svFavsl~P-~~~l--~a----TGGgDD~AflW~~~~ge~---~~eltgH--------KDS--------V 109 (399)
T KOG0296|consen 56 SLVTFDKHTDSVFAVSLHP-NNNL--VA----TGGGDDLAFLWDISTGEF---AGELTGH--------KDS--------V 109 (399)
T ss_pred ceeehhhcCCceEEEEeCC-CCce--EE----ecCCCceEEEEEccCCcc---eeEecCC--------CCc--------e
Confidence 3667778999999999887 3322 21 344555678888876551 1123344 222 3
Q ss_pred ceeeecCCCcEEEEecCccCccccCCCccccccccccccCCCCcEEEEEecCcceeeeEEEe-cccceeEEEEe-cCCeE
Q 000725 948 SCALFTPDGQYLVLLDSMKTPYCREGRSDCLCSTCTSHRLDENAVKIVKVKPGYVSVVAKLK-TDDCVQCILVC-EPKHL 1025 (1329)
Q Consensus 948 sglqFTPDGQ~LvLlgsik~p~CR~~~~dC~Cs~C~~s~seDNtVKIv~V~~G~vsll~kL~-~h~sV~cIlVc-DpnhL 1025 (1329)
+.+.||-||+||+ ++.-++.|+||++.+|. ..-+|. ....+.=+-|- -.+.|
T Consensus 110 t~~~FshdgtlLA------------------------TGdmsG~v~v~~~stg~--~~~~~~~e~~dieWl~WHp~a~il 163 (399)
T KOG0296|consen 110 TCCSFSHDGTLLA------------------------TGDMSGKVLVFKVSTGG--EQWKLDQEVEDIEWLKWHPRAHIL 163 (399)
T ss_pred EEEEEccCceEEE------------------------ecCCCccEEEEEcccCc--eEEEeecccCceEEEEecccccEE
Confidence 5789999999999 99999999999999999 666665 22444333333 56778
Q ss_pred EEecCCCeEEEEeccCcceEEEeeeeecCCCCcccceeEEEecCCCCCeeEecCCCccEEEEEccccceeeeec------
Q 000725 1026 IAVGESGKLHLWEMNSSWSAQVEECIIPINDCIYPCIVEMKRIPKCAPLVVGHNGFGEFGIWDISKRVLVSRFS------ 1099 (1329)
Q Consensus 1026 VSaSdDGkL~IWDM~SgWsm~tee~Vi~~n~~v~p~I~elKrFpkss~lIVTgSGDgtf~LWDIskg~llqsF~------ 1099 (1329)
.+++.||.|-.|-+++.=..+.+. ||...+-+= +|-+++..|++|.-||++++||..+|+.+-+..
T Consensus 164 lAG~~DGsvWmw~ip~~~~~kv~~-------Gh~~~ct~G-~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~ 235 (399)
T KOG0296|consen 164 LAGSTDGSVWMWQIPSQALCKVMS-------GHNSPCTCG-EFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLE 235 (399)
T ss_pred EeecCCCcEEEEECCCcceeeEec-------CCCCCcccc-cccCCCceEEEEecCceEEEEecCCCceeEEecccccCc
Confidence 899999999999999986777777 776666665 677889999999999999999999999876665
Q ss_pred cCcc---------------------------ceeEecc--------------------cc-------ccccccCcceEEC
Q 000725 1100 AARA---------------------------SIYQFFP--------------------IN-------LFSWQRNGSVSMD 1125 (1329)
Q Consensus 1100 ahs~---------------------------sV~sfsP--------------------~~-------s~S~d~~v~tfd~ 1125 (1329)
.|-. -|.+++| .. ++++||+|-+||+
T Consensus 236 ~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~ 315 (399)
T KOG0296|consen 236 LPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDL 315 (399)
T ss_pred CCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEec
Confidence 2211 1122343 22 6789999999999
Q ss_pred cchhhhc-cccccccccCCCceeecCCCCccceEEEEeeccCccchhhccc----ccccCCCCcceeEEEeeeccceecC
Q 000725 1126 ASLELTN-TATTSLFSKHSEKSSFCPSVGEDSAIWLLVSTISDSDAQHNCM----SRDCQKNPVRFWRLALLVKNRVILG 1200 (1329)
Q Consensus 1126 ~s~d~~l-eatv~~fSgdvn~VsF~P~sGeD~AiwLLVST~Sdd~t~~Dlr----a~~~~gH~n~~wRLALl~K~siI~G 1200 (1329)
+.-..+- -.+-.+|-. ..|.+ -..||.++++-..++||.| .-+|.||.-.++.++
T Consensus 316 a~~~~R~~c~he~~V~~----l~w~~------t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~---------- 375 (399)
T KOG0296|consen 316 AASTLRHICEHEDGVTK----LKWLN------TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFA---------- 375 (399)
T ss_pred ccchhheeccCCCceEE----EEEcC------cchheeeccCceEEeeeccccceEEEEecCchheeEEE----------
Confidence 9887772 233444444 88887 2578999999999999999 678999999999966
Q ss_pred CCCCCCceeeecCCCeEEeecCCCeEEEEEcc
Q 000725 1201 SPLDPRASAIGASSGLGIIGTNDGLVYAWELS 1232 (1329)
Q Consensus 1201 s~ldpra~afs~SG~~gfaGT~DGlVYmWDLs 1232 (1329)
+++.++.+++++.|++-.+.+..
T Consensus 376 ---------ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 376 ---------LSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred ---------EcCCCcEEEEecCCCeEEEEecC
Confidence 47899999999999999998864
No 109
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.42 E-value=5.4e-13 Score=147.25 Aligned_cols=188 Identities=13% Similarity=0.150 Sum_probs=152.4
Q ss_pred cceeEEEEe-cCCeEEEecCCCeEEEEeccCcceEEEeeeeecCCCC-cccceeEEEecCCCCCeeEecCCCccEEEEEc
Q 000725 1012 DCVQCILVC-EPKHLIAVGESGKLHLWEMNSSWSAQVEECIIPINDC-IYPCIVEMKRIPKCAPLVVGHNGFGEFGIWDI 1089 (1329)
Q Consensus 1012 ~sV~cIlVc-DpnhLVSaSdDGkL~IWDM~SgWsm~tee~Vi~~n~~-v~p~I~elKrFpkss~lIVTgSGDgtf~LWDI 1089 (1329)
--|-|--++ |.+||||+|-||-|-||+.-+|=..+-+.|-|.+|-- +-..++++ .|..++.++++|+-||.|++|-|
T Consensus 214 Sh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci-~FSRDsEMlAsGsqDGkIKvWri 292 (508)
T KOG0275|consen 214 SHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCI-SFSRDSEMLASGSQDGKIKVWRI 292 (508)
T ss_pred cchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEE-eecccHHHhhccCcCCcEEEEEE
Confidence 457788899 9999999999999999999999888888877755543 55568899 99999999999999999999999
Q ss_pred cccceeeeec-cCccceeE--ecccc----ccccccCcceEECcchhhhccccccccccCCCceeecCCCCccceEEEEe
Q 000725 1090 SKRVLVSRFS-AARASIYQ--FFPIN----LFSWQRNGSVSMDASLELTNTATTSLFSKHSEKSSFCPSVGEDSAIWLLV 1162 (1329)
Q Consensus 1090 skg~llqsF~-ahs~sV~s--fsP~~----s~S~d~~v~tfd~~s~d~~leatv~~fSgdvn~VsF~P~sGeD~AiwLLV 1162 (1329)
++|+|+.+|+ ||+.-|++ |+.++ +.|+|-++++.-.-++.+
T Consensus 293 ~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~-------------------------------- 340 (508)
T KOG0275|consen 293 ETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKC-------------------------------- 340 (508)
T ss_pred ecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchh--------------------------------
Confidence 9999999999 99999888 77776 223333332222222211
Q ss_pred eccCccchhhcccccccCCCCcceeEEEeeeccceecCCCCCCCceeeecCCCeEEeecCCCeEEEEEccccceeeeee-
Q 000725 1163 STISDSDAQHNCMSRDCQKNPVRFWRLALLVKNRVILGSPLDPRASAIGASSGLGIIGTNDGLVYAWELSSGNKLGILH- 1241 (1329)
Q Consensus 1163 ST~Sdd~t~~Dlra~~~~gH~n~~wRLALl~K~siI~Gs~ldpra~afs~SG~~gfaGT~DGlVYmWDLstG~kL~tL~- 1241 (1329)
+++|.||..-.-. +.|...|.|+++.+.||+|++|+.-|+.++.|+.
T Consensus 341 -------------LKEfrGHsSyvn~-------------------a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~ 388 (508)
T KOG0275|consen 341 -------------LKEFRGHSSYVNE-------------------ATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKP 388 (508)
T ss_pred -------------HHHhcCccccccc-------------------eEEcCCCCeEEEecCCccEEEecCcchhhhhhccC
Confidence 5667777654444 6788999999999999999999999999999996
Q ss_pred cccCceEEEEEecCCCCceEEEe
Q 000725 1242 HFKGGTVSCIATDDSGLQALAVA 1264 (1329)
Q Consensus 1242 ~Heg~rVSCVA~dps~p~~~AsA 1264 (1329)
.-++..|-.|-.=|..|.-+.+|
T Consensus 389 ~~~d~~vnsv~~~PKnpeh~iVC 411 (508)
T KOG0275|consen 389 LGTDYPVNSVILLPKNPEHFIVC 411 (508)
T ss_pred CCCcccceeEEEcCCCCceEEEE
Confidence 33566788899999998889999
No 110
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.41 E-value=1.2e-11 Score=142.43 Aligned_cols=284 Identities=13% Similarity=0.095 Sum_probs=205.3
Q ss_pred ccccceeeecCCCcEEEEecCccCccccCCCccccccccccccCCCCcEEEEEecCcceeeeE--EEecc--cceeEEEE
Q 000725 944 ALERSCALFTPDGQYLVLLDSMKTPYCREGRSDCLCSTCTSHRLDENAVKIVKVKPGYVSVVA--KLKTD--DCVQCILV 1019 (1329)
Q Consensus 944 ~~ersglqFTPDGQ~LvLlgsik~p~CR~~~~dC~Cs~C~~s~seDNtVKIv~V~~G~vsll~--kL~~h--~sV~cIlV 1019 (1329)
+-.-+.|+|-|.|-.+| +||-|++||.||.+.=..++.. .|... .-++++-+
T Consensus 167 tk~Vsal~~Dp~GaR~~------------------------sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~y 222 (641)
T KOG0772|consen 167 TKIVSALAVDPSGARFV------------------------SGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQY 222 (641)
T ss_pred ceEEEEeeecCCCceee------------------------eccccceEEEEecccccccchhhhccCcccccccceeee
Confidence 34567899999999999 9999999999998865544433 23333 56777778
Q ss_pred e-cCCeEEEecCCCeEEEEeccCcceEEEee---eee-cC-CCCcccceeEEEecCCCCCeeEecCCCccEEEEEccccc
Q 000725 1020 C-EPKHLIAVGESGKLHLWEMNSSWSAQVEE---CII-PI-NDCIYPCIVEMKRIPKCAPLVVGHNGFGEFGIWDISKRV 1093 (1329)
Q Consensus 1020 c-DpnhLVSaSdDGkL~IWDM~SgWsm~tee---~Vi-~~-n~~v~p~I~elKrFpkss~lIVTgSGDgtf~LWDIskg~ 1093 (1329)
+ -+..|+.++..-+.+|.|=.---.+.+-. ||+ +. -+||...+.+.-=-|..-+.++|++.|||.||||+..-.
T Consensus 223 s~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k 302 (641)
T KOG0772|consen 223 SVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTK 302 (641)
T ss_pred cCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCch
Confidence 8 77788888889999999955443444433 666 33 356777777762335567889999999999999998766
Q ss_pred e-eeeeccC-----ccceeE--ecccc----ccccccCcceEECcchhhh-----ccccccccccCCCceeecCCCCccc
Q 000725 1094 L-VSRFSAA-----RASIYQ--FFPIN----LFSWQRNGSVSMDASLELT-----NTATTSLFSKHSEKSSFCPSVGEDS 1156 (1329)
Q Consensus 1094 l-lqsF~ah-----s~sV~s--fsP~~----s~S~d~~v~tfd~~s~d~~-----leatv~~fSgdvn~VsF~P~sGeD~ 1156 (1329)
. +|.|..- .-.|.+ |+|++ .+=.||.|-+|++++--.+ +.||.. -.++-+++|++ |
T Consensus 303 ~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~--g~~Itsi~FS~----d- 375 (641)
T KOG0772|consen 303 SQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLP--GQDITSISFSY----D- 375 (641)
T ss_pred hheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCC--CCceeEEEecc----c-
Confidence 5 5666432 233444 99998 6678999999999776555 234333 01455599999 8
Q ss_pred eEEEEeeccCccchhhccc-ccccCCCCcceeEEEeeeccceecCCCCCCCceeeecCCCeEEeecC------CCeEEEE
Q 000725 1157 AIWLLVSTISDSDAQHNCM-SRDCQKNPVRFWRLALLVKNRVILGSPLDPRASAIGASSGLGIIGTN------DGLVYAW 1229 (1329)
Q Consensus 1157 AiwLLVST~Sdd~t~~Dlr-a~~~~gH~n~~wRLALl~K~siI~Gs~ldpra~afs~SG~~gfaGT~------DGlVYmW 1229 (1329)
+..||.=..+++.+.||+| .++ +-..|. -+-++.+-+-|||||..+++++||. -|+++++
T Consensus 376 g~~LlSRg~D~tLKvWDLrq~kk----pL~~~t---------gL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~ 442 (641)
T KOG0772|consen 376 GNYLLSRGFDDTLKVWDLRQFKK----PLNVRT---------GLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFF 442 (641)
T ss_pred cchhhhccCCCceeeeecccccc----chhhhc---------CCCccCCCCccccCCCceEEEecccccCCCCCceEEEE
Confidence 9999977777778889999 444 222222 2234455567999999999999986 5799999
Q ss_pred EccccceeeeeecccCceEEEEEecCCCCceEEEecCCCCCCcccc
Q 000725 1230 ELSSGNKLGILHHFKGGTVSCIATDDSGLQALAVAGDGPDGGRRQR 1275 (1329)
Q Consensus 1230 DLstG~kL~tL~~Heg~rVSCVA~dps~p~~~AsA~d~~d~~~r~~ 1275 (1329)
|-.|=..+.++.-- +..|.-++-||.-+..+|.. +|||+.|+
T Consensus 443 d~~t~d~v~ki~i~-~aSvv~~~WhpkLNQi~~gs---gdG~~~vy 484 (641)
T KOG0772|consen 443 DRMTLDTVYKIDIS-TASVVRCLWHPKLNQIFAGS---GDGTAHVY 484 (641)
T ss_pred eccceeeEEEecCC-CceEEEEeecchhhheeeec---CCCceEEE
Confidence 99998888888654 44788889999999855554 34666653
No 111
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.40 E-value=2.6e-12 Score=145.54 Aligned_cols=220 Identities=19% Similarity=0.237 Sum_probs=164.2
Q ss_pred eeEEEecccceeEEEEecCCe-EEEecCCCeEEEEeccCcceEEEeeeeecCCCCcccceeEEEecCCCCCeeEecCCCc
Q 000725 1004 VVAKLKTDDCVQCILVCEPKH-LIAVGESGKLHLWEMNSSWSAQVEECIIPINDCIYPCIVEMKRIPKCAPLVVGHNGFG 1082 (1329)
Q Consensus 1004 ll~kL~~h~sV~cIlVcDpnh-LVSaSdDGkL~IWDM~SgWsm~tee~Vi~~n~~v~p~I~elKrFpkss~lIVTgSGDg 1082 (1329)
+..+|...+.+.|.+=|.+.- |=+.+- |.|..+ -.....+.|+||+-|.
T Consensus 192 ~p~~la~~d~~~~~~q~ash~gLH~t~~-----------------------------pgi~al-d~~~s~~~ilTGG~d~ 241 (506)
T KOG0289|consen 192 LPEKLATTDELSCLLQVASHTGLHSTST-----------------------------PGITAL-DIIPSSSKILTGGEDK 241 (506)
T ss_pred CCcccccHHHHHHHHhcCCCcceeccCC-----------------------------CCeeEE-eecCCCCcceecCCCC
Confidence 566777788888887774332 333332 234444 2223368999999999
Q ss_pred cEEEEEccccceeeeeccCccceeE--ecccc----ccccccCcceEECcchhhhc--cccccccccCCCceeecCCCCc
Q 000725 1083 EFGIWDISKRVLVSRFSAARASIYQ--FFPIN----LFSWQRNGSVSMDASLELTN--TATTSLFSKHSEKSSFCPSVGE 1154 (1329)
Q Consensus 1083 tf~LWDIskg~llqsF~ahs~sV~s--fsP~~----s~S~d~~v~tfd~~s~d~~l--eatv~~fSgdvn~VsF~P~sGe 1154 (1329)
+.-++|..+.+.+++|.||+..|+. |.|+. ..|-|..|++|+...--+.. ..+-.+|.+ +..+| +
T Consensus 242 ~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~----ls~h~-t-- 314 (506)
T KOG0289|consen 242 TAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTG----LSLHP-T-- 314 (506)
T ss_pred ceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCcccccccccccee----eeecc-C--
Confidence 9999999999999999999999999 99988 78999999999998877662 344454555 88888 3
Q ss_pred cceEEEEeeccCccchhhcccccccCCCCcceeEEEeeeccceecCCCCCCCceeeecCCCeEEeecCCCeEEEEEcccc
Q 000725 1155 DSAIWLLVSTISDSDAQHNCMSRDCQKNPVRFWRLALLVKNRVILGSPLDPRASAIGASSGLGIIGTNDGLVYAWELSSG 1234 (1329)
Q Consensus 1155 D~AiwLLVST~Sdd~t~~Dlra~~~~gH~n~~wRLALl~K~siI~Gs~ldpra~afs~SG~~gfaGT~DGlVYmWDLstG 1234 (1329)
+-.||..+.+..-.-.|++... .|+...-+ ++..+-++.+|-|+|-++..|+.||.|.+|||+++
T Consensus 315 --geYllsAs~d~~w~Fsd~~~g~---------~lt~vs~~----~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~ 379 (506)
T KOG0289|consen 315 --GEYLLSASNDGTWAFSDISSGS---------QLTVVSDE----TSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQ 379 (506)
T ss_pred --CcEEEEecCCceEEEEEccCCc---------EEEEEeec----cccceeEEeeEcCCceEEeccCCCceEEEEEcCCc
Confidence 4456643333333337777554 44432222 56677788999999999999999999999999999
Q ss_pred ceeeeeecccCceEEEEEecCCCCceEEEecCCCCCCccccCCCCCCCCcEEEeeeCC
Q 000725 1235 NKLGILHHFKGGTVSCIATDDSGLQALAVAGDGPDGGRRQRDPRHGQNDHVRIWKMDP 1292 (1329)
Q Consensus 1235 ~kL~tL~~Heg~rVSCVA~dps~p~~~AsA~d~~d~~~r~~~~~~s~D~~VRiW~~~~ 1292 (1329)
.-+..+-+|++ .|..|+++..+== ||+| +.|+.|++||.+.
T Consensus 380 ~~~a~Fpght~-~vk~i~FsENGY~-Lat~---------------add~~V~lwDLRK 420 (506)
T KOG0289|consen 380 TNVAKFPGHTG-PVKAISFSENGYW-LATA---------------ADDGSVKLWDLRK 420 (506)
T ss_pred cccccCCCCCC-ceeEEEeccCceE-EEEE---------------ecCCeEEEEEehh
Confidence 99999999999 8999999955544 6666 4566677777654
No 112
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.40 E-value=4.1e-12 Score=140.61 Aligned_cols=261 Identities=12% Similarity=0.129 Sum_probs=180.9
Q ss_pred ceeeecCCCcEEEEecCccCccccCCCccccccccccccCCCCcEEEEEec-------CcceeeeEE---Eecc--ccee
Q 000725 948 SCALFTPDGQYLVLLDSMKTPYCREGRSDCLCSTCTSHRLDENAVKIVKVK-------PGYVSVVAK---LKTD--DCVQ 1015 (1329)
Q Consensus 948 sglqFTPDGQ~LvLlgsik~p~CR~~~~dC~Cs~C~~s~seDNtVKIv~V~-------~G~vsll~k---L~~h--~sV~ 1015 (1329)
-|..|+|||-.|+ +-++||++++|++- +++++...+ +.=. +.|-
T Consensus 53 kgckWSPDGSciL------------------------~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvy 108 (406)
T KOG2919|consen 53 KGCKWSPDGSCIL------------------------SLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVY 108 (406)
T ss_pred ccceeCCCCceEE------------------------eecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEE
Confidence 4889999999999 89999999999952 233222211 1111 3333
Q ss_pred EEEEe--------cCCeEEEecCCCeEEEEeccCcceEEEee-eeecCCCCcccceeEEEecCCCCCeeEecCCCccEEE
Q 000725 1016 CILVC--------EPKHLIAVGESGKLHLWEMNSSWSAQVEE-CIIPINDCIYPCIVEMKRIPKCAPLVVGHNGFGEFGI 1086 (1329)
Q Consensus 1016 cIlVc--------DpnhLVSaSdDGkL~IWDM~SgWsm~tee-~Vi~~n~~v~p~I~elKrFpkss~lIVTgSGDgtf~L 1086 (1329)
+-.|- +-+..++++.|--||+||.-+|-....+. |.+++ -+--..+| .|.+++.+|..| +...|++
T Consensus 109 dy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~d---e~taAhsL-~Fs~DGeqlfaG-ykrcirv 183 (406)
T KOG2919|consen 109 DYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQD---EYTAAHSL-QFSPDGEQLFAG-YKRCIRV 183 (406)
T ss_pred EEEeeeccccCCCccceeeeccccCceeeeeccccccccchhhhhhHH---hhhhheeE-EecCCCCeEeec-ccceEEE
Confidence 33332 67889999999999999999987666555 22211 12223457 999999999854 7789999
Q ss_pred EEc-cccce---eeeecc----CccceeE--ecccc--ccccccCcceEECcchhhh-----ccccccccccCCCceeec
Q 000725 1087 WDI-SKRVL---VSRFSA----ARASIYQ--FFPIN--LFSWQRNGSVSMDASLELT-----NTATTSLFSKHSEKSSFC 1149 (1329)
Q Consensus 1087 WDI-skg~l---lqsF~a----hs~sV~s--fsP~~--s~S~d~~v~tfd~~s~d~~-----leatv~~fSgdvn~VsF~ 1149 (1329)
+|+ +.|.. ..++.. -.+.+-+ |+|.. +..|.+-++.+.+-.-+.+ +.++.-.+.- .+|.
T Consensus 184 Fdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvTh----L~~~ 259 (406)
T KOG2919|consen 184 FDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTH----LQWC 259 (406)
T ss_pred eeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeee----EEec
Confidence 999 44443 222221 1233323 88987 5667766777766655555 2344444444 8888
Q ss_pred CCCCccceEEEEeeccCccch-hhccc-----ccccCCCCc-ceeEEEeeeccceecCCCCCCCceeeecCCCeEEeecC
Q 000725 1150 PSVGEDSAIWLLVSTISDSDA-QHNCM-----SRDCQKNPV-RFWRLALLVKNRVILGSPLDPRASAIGASSGLGIIGTN 1222 (1329)
Q Consensus 1150 P~sGeD~AiwLLVST~Sdd~t-~~Dlr-----a~~~~gH~n-~~wRLALl~K~siI~Gs~ldpra~afs~SG~~gfaGT~ 1222 (1329)
| | |.-|++++.-++.- |||+| +-..+.|.. .-.|+- -++.+.|+++++|+-
T Consensus 260 e----d-Gn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~-----------------FDld~~~~~LasG~t 317 (406)
T KOG2919|consen 260 E----D-GNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRIL-----------------FDLDPKGEILASGDT 317 (406)
T ss_pred c----C-cCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEE-----------------EecCCCCceeeccCC
Confidence 8 6 77899888866544 49999 222233333 233433 366789999999999
Q ss_pred CCeEEEEEccc-cceeeeeecccCceEEEEEecCCCCceEEEec
Q 000725 1223 DGLVYAWELSS-GNKLGILHHFKGGTVSCIATDDSGLQALAVAG 1265 (1329)
Q Consensus 1223 DGlVYmWDLst-G~kL~tL~~Heg~rVSCVA~dps~p~~~AsA~ 1265 (1329)
||.|.|||+.+ |.-+..+..|.+ .|--|+.+|.-|. +|+++
T Consensus 318 dG~V~vwdlk~~gn~~sv~~~~sd-~vNgvslnP~mpi-latss 359 (406)
T KOG2919|consen 318 DGSVRVWDLKDLGNEVSVTGNYSD-TVNGVSLNPIMPI-LATSS 359 (406)
T ss_pred CccEEEEecCCCCCcccccccccc-cccceecCcccce-eeecc
Confidence 99999999999 999999999999 8999999999998 88884
No 113
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.38 E-value=5.8e-12 Score=144.44 Aligned_cols=244 Identities=17% Similarity=0.201 Sum_probs=190.1
Q ss_pred CCCCcEEEEEec-CcceeeeEEEe---cc-cceeEEEEecCCeEEEecCCCeEEEEeccCcceEEEeeeeecCCCCcccc
Q 000725 987 LDENAVKIVKVK-PGYVSVVAKLK---TD-DCVQCILVCEPKHLIAVGESGKLHLWEMNSSWSAQVEECIIPINDCIYPC 1061 (1329)
Q Consensus 987 seDNtVKIv~V~-~G~vsll~kL~---~h-~sV~cIlVcDpnhLVSaSdDGkL~IWDM~SgWsm~tee~Vi~~n~~v~p~ 1061 (1329)
+..+.||||++. .|...++.-|. .. +==.|-|..|.|-|+.+|+--+|-|||+++-.-...++ -.|-.+-
T Consensus 437 gGkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikae-----ltssapa 511 (705)
T KOG0639|consen 437 GGKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAE-----LTSSAPA 511 (705)
T ss_pred cCCCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhh-----cCCcchh
Confidence 346899999974 45555555543 22 33356666699999999999999999998877666666 3356677
Q ss_pred eeEEEecCCCCCeeEecCCCccEEEEEccccceeeeeccCccceeE--ecccc----ccccccCcceEECcchhhhcccc
Q 000725 1062 IVEMKRIPKCAPLVVGHNGFGEFGIWDISKRVLVSRFSAARASIYQ--FFPIN----LFSWQRNGSVSMDASLELTNTAT 1135 (1329)
Q Consensus 1062 I~elKrFpkss~lIVTgSGDgtf~LWDIskg~llqsF~ahs~sV~s--fsP~~----s~S~d~~v~tfd~~s~d~~leat 1135 (1329)
+..| .+++++.+..++-.||.|+|||+.-..++..|.+|.+-+-+ +++++ ++-.|.++|-||.+.+...+
T Consensus 512 CyAL-a~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlq--- 587 (705)
T KOG0639|consen 512 CYAL-AISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQ--- 587 (705)
T ss_pred hhhh-hcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhh---
Confidence 8888 99999999999999999999999999999999999999888 99999 78889999999998887665
Q ss_pred ccccccCCCceeecCCCCccceEEEEeeccCccchh-hcccccccCCCCcceeEEEeeeccceecCCCCCCCceeeecCC
Q 000725 1136 TSLFSKHSEKSSFCPSVGEDSAIWLLVSTISDSDAQ-HNCMSRDCQKNPVRFWRLALLVKNRVILGSPLDPRASAIGASS 1214 (1329)
Q Consensus 1136 v~~fSgdvn~VsF~P~sGeD~AiwLLVST~Sdd~t~-~Dlra~~~~gH~n~~wRLALl~K~siI~Gs~ldpra~afs~SG 1214 (1329)
.+-|+..+=+..+.| - +-||+|+-.+.-.-. |--..+.|+-|--.+--|. +-|+++|
T Consensus 588 qhdF~SQIfSLg~cP----~-~dWlavGMens~vevlh~skp~kyqlhlheScVLS-----------------lKFa~cG 645 (705)
T KOG0639|consen 588 QHDFSSQIFSLGYCP----T-GDWLAVGMENSNVEVLHTSKPEKYQLHLHESCVLS-----------------LKFAYCG 645 (705)
T ss_pred hhhhhhhheecccCC----C-ccceeeecccCcEEEEecCCccceeecccccEEEE-----------------EEecccC
Confidence 466888888899999 2 569999987766554 3233455555444443333 6899999
Q ss_pred CeEEeecCCCeEEEEEccccceeeeeecccCceEEEEEecCCCCceEEEe
Q 000725 1215 GLGIIGTNDGLVYAWELSSGNKLGILHHFKGGTVSCIATDDSGLQALAVA 1264 (1329)
Q Consensus 1215 ~~gfaGT~DGlVYmWDLstG~kL~tL~~Heg~rVSCVA~dps~p~~~AsA 1264 (1329)
+.+++-.-|+++++|.+--|..+-...--.. |.|-.++ ....-|+.+
T Consensus 646 kwfvStGkDnlLnawrtPyGasiFqskE~Ss--VlsCDIS-~ddkyIVTG 692 (705)
T KOG0639|consen 646 KWFVSTGKDNLLNAWRTPYGASIFQSKESSS--VLSCDIS-FDDKYIVTG 692 (705)
T ss_pred ceeeecCchhhhhhccCccccceeeccccCc--ceeeeec-cCceEEEec
Confidence 9999999999999999999998877766555 7776776 444424444
No 114
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.38 E-value=6.6e-12 Score=152.34 Aligned_cols=235 Identities=15% Similarity=0.132 Sum_probs=172.9
Q ss_pred ccceeeecCCCcEEEEecCccCccccCCCccccccccccccCCCCcEEEEEecC-----ccee-----------eeEEEe
Q 000725 946 ERSCALFTPDGQYLVLLDSMKTPYCREGRSDCLCSTCTSHRLDENAVKIVKVKP-----GYVS-----------VVAKLK 1009 (1329)
Q Consensus 946 ersglqFTPDGQ~LvLlgsik~p~CR~~~~dC~Cs~C~~s~seDNtVKIv~V~~-----G~vs-----------ll~kL~ 1009 (1329)
--++++|||||+||+ +||+|+.|-||.-+. ..-| .+..|.
T Consensus 71 sv~CVR~S~dG~~lA------------------------sGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~ 126 (942)
T KOG0973|consen 71 SVNCVRFSPDGSYLA------------------------SGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILR 126 (942)
T ss_pred ceeEEEECCCCCeEe------------------------eccCcceEEEeeecccCCcccccccccccccceeeEEEEEe
Confidence 457999999999999 999999999999773 2224 788999
Q ss_pred cc-cceeEEEEe-cCCeEEEecCCCeEEEEeccCcceEEEeeeeecCCCCcccceeEEEecCCCCCeeEecCCCccEEEE
Q 000725 1010 TD-DCVQCILVC-EPKHLIAVGESGKLHLWEMNSSWSAQVEECIIPINDCIYPCIVEMKRIPKCAPLVVGHNGFGEFGIW 1087 (1329)
Q Consensus 1010 ~h-~sV~cIlVc-DpnhLVSaSdDGkL~IWDM~SgWsm~tee~Vi~~n~~v~p~I~elKrFpkss~lIVTgSGDgtf~LW 1087 (1329)
+| ..|++|.|. |..+|||+|-|++|+||++.|.-..++.+ +|-..+-.| .|-+-++.+++=+.|.++.+|
T Consensus 127 ~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~-------~H~s~VKGv-s~DP~Gky~ASqsdDrtikvw 198 (942)
T KOG0973|consen 127 GHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLR-------GHQSLVKGV-SWDPIGKYFASQSDDRTLKVW 198 (942)
T ss_pred cCCCccceeccCCCccEEEEecccceEEEEccccceeeeeee-------cccccccce-EECCccCeeeeecCCceEEEE
Confidence 99 999999999 99999999999999999999998888888 999999999 999999999999999999999
Q ss_pred EccccceeeeeccCccce-e-------Eecccc-----ccccccCcceEECcchhhh-------ccccccccccCCCcee
Q 000725 1088 DISKRVLVSRFSAARASI-Y-------QFFPIN-----LFSWQRNGSVSMDASLELT-------NTATTSLFSKHSEKSS 1147 (1329)
Q Consensus 1088 DIskg~llqsF~ahs~sV-~-------sfsP~~-----s~S~d~~v~tfd~~s~d~~-------leatv~~fSgdvn~Vs 1147 (1329)
++..=++..++.+|-.-+ . +.+|+| .-++++-+.+ ..-+++- +.+|-.++.- |+
T Consensus 199 rt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~--~~IieR~tWk~~~~LvGH~~p~ev----vr 272 (942)
T KOG0973|consen 199 RTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKST--IAIIERGTWKVDKDLVGHSAPVEV----VR 272 (942)
T ss_pred EcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcce--eEEEecCCceeeeeeecCCCceEE----EE
Confidence 999988888888887732 2 267777 2222222221 1122222 4455556666 88
Q ss_pred ecCCCCccceE------------EEEeeccCccchhhcccccccCCCCcceeEEEeeeccceecCCCCCCCceee--ecC
Q 000725 1148 FCPSVGEDSAI------------WLLVSTISDSDAQHNCMSRDCQKNPVRFWRLALLVKNRVILGSPLDPRASAI--GAS 1213 (1329)
Q Consensus 1148 F~P~sGeD~Ai------------wLLVST~Sdd~t~~Dlra~~~~gH~n~~wRLALl~K~siI~Gs~ldpra~af--s~S 1213 (1329)
|.|.-=|+-.. ++-|++-|-+...|.-. +.++.+..=...+-.+.++ +++
T Consensus 273 FnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~----------------~~RPl~vi~~lf~~SI~DmsWspd 336 (942)
T KOG0973|consen 273 FNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTA----------------LPRPLFVIHNLFNKSIVDMSWSPD 336 (942)
T ss_pred eChHHhccccccCCccCCCcceEEEEEecCCccEEEEecC----------------CCCchhhhhhhhcCceeeeeEcCC
Confidence 98854444333 33444444444444332 2333333222233344554 566
Q ss_pred CCeEEeecCCCeEEEEEcccc
Q 000725 1214 SGLGIIGTNDGLVYAWELSSG 1234 (1329)
Q Consensus 1214 G~~gfaGT~DGlVYmWDLstG 1234 (1329)
|..+|+-|.||+|++-.+..+
T Consensus 337 G~~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 337 GFSLFACSLDGTVALIHFEEK 357 (942)
T ss_pred CCeEEEEecCCeEEEEEcchH
Confidence 999999999999999998764
No 115
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.38 E-value=1.7e-10 Score=122.92 Aligned_cols=271 Identities=11% Similarity=0.097 Sum_probs=170.1
Q ss_pred cCCCCcEEEEEecC-cceeeeEEEecccceeEEEEe-cCCeEEE-ecCCCeEEEEecc-CcceEEEeeeeecCCCCcccc
Q 000725 986 RLDENAVKIVKVKP-GYVSVVAKLKTDDCVQCILVC-EPKHLIA-VGESGKLHLWEMN-SSWSAQVEECIIPINDCIYPC 1061 (1329)
Q Consensus 986 ~seDNtVKIv~V~~-G~vsll~kL~~h~sV~cIlVc-DpnhLVS-aSdDGkL~IWDM~-SgWsm~tee~Vi~~n~~v~p~ 1061 (1329)
-..++.|.+|++.+ |...++.++...+..+.+.+. |+++|.. +..++.|.+|++. .++.........+. .|
T Consensus 8 ~~~~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~----~p- 82 (330)
T PRK11028 8 SPESQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPG----SP- 82 (330)
T ss_pred cCCCCCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCC----Cc-
Confidence 35689999999964 777788888877889999999 9999855 4668999999997 45433222211111 12
Q ss_pred eeEEEecCCCCCeeEecC-CCccEEEEEccc-c---ceeeeeccCcccee-Eecccc-----ccccccCcceEECcc-hh
Q 000725 1062 IVEMKRIPKCAPLVVGHN-GFGEFGIWDISK-R---VLVSRFSAARASIY-QFFPIN-----LFSWQRNGSVSMDAS-LE 1129 (1329)
Q Consensus 1062 I~elKrFpkss~lIVTgS-GDgtf~LWDIsk-g---~llqsF~ahs~sV~-sfsP~~-----s~S~d~~v~tfd~~s-~d 1129 (1329)
.-+ .|.++++.|+.++ +++.+.+||+.+ | ..++.+.++...-. .|.|++ +...++.|.+|++.. +.
T Consensus 83 -~~i-~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~ 160 (330)
T PRK11028 83 -THI-STDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGH 160 (330)
T ss_pred -eEE-EECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCc
Confidence 235 6777787666555 599999999974 4 23455544322221 288987 344578899999875 21
Q ss_pred hhc----cccccccccCCCceeecCCCCccceEEEEeecc-CccchhhcccccccCCCCcceeEEEeeeccceecCC---
Q 000725 1130 LTN----TATTSLFSKHSEKSSFCPSVGEDSAIWLLVSTI-SDSDAQHNCMSRDCQKNPVRFWRLALLVKNRVILGS--- 1201 (1329)
Q Consensus 1130 ~~l----eatv~~fSgdvn~VsF~P~sGeD~AiwLLVST~-Sdd~t~~Dlra~~~~gH~n~~wRLALl~K~siI~Gs--- 1201 (1329)
... ..+... -.....+.|+| | +.+|+|+.. ++....||+.... + .+++. .+=. .+..
T Consensus 161 l~~~~~~~~~~~~-g~~p~~~~~~p----d-g~~lyv~~~~~~~v~v~~~~~~~--~----~~~~~--~~~~-~~p~~~~ 225 (330)
T PRK11028 161 LVAQEPAEVTTVE-GAGPRHMVFHP----N-QQYAYCVNELNSSVDVWQLKDPH--G----EIECV--QTLD-MMPADFS 225 (330)
T ss_pred ccccCCCceecCC-CCCCceEEECC----C-CCEEEEEecCCCEEEEEEEeCCC--C----CEEEE--EEEe-cCCCcCC
Confidence 110 001111 11233489999 7 888888875 8888889987431 0 11110 0000 1111
Q ss_pred -CCCCCceeeecCCCeEEeec-CCCeEEEEEccccceeeeeecccC--ceEEEEEecCCCCceEEEecCCCCCCccccCC
Q 000725 1202 -PLDPRASAIGASSGLGIIGT-NDGLVYAWELSSGNKLGILHHFKG--GTVSCIATDDSGLQALAVAGDGPDGGRRQRDP 1277 (1329)
Q Consensus 1202 -~ldpra~afs~SG~~gfaGT-~DGlVYmWDLstG~kL~tL~~Heg--~rVSCVA~dps~p~~~AsA~d~~d~~~r~~~~ 1277 (1329)
+--|...+++++|++++++. .++.|.+||+.+.....++.+|.. .....++++|++.. +++|.
T Consensus 226 ~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~-l~va~------------ 292 (330)
T PRK11028 226 DTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKY-LIAAG------------ 292 (330)
T ss_pred CCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCE-EEEEE------------
Confidence 11123477899999999985 489999999976554344444422 12456788888877 55552
Q ss_pred CCCCCCcEEEeeeCCC
Q 000725 1278 RHGQNDHVRIWKMDPN 1293 (1329)
Q Consensus 1278 ~~s~D~~VRiW~~~~~ 1293 (1329)
..+++|.||+.++.
T Consensus 293 --~~~~~v~v~~~~~~ 306 (330)
T PRK11028 293 --QKSHHISVYEIDGE 306 (330)
T ss_pred --ccCCcEEEEEEcCC
Confidence 34789999987754
No 116
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.36 E-value=1e-12 Score=154.71 Aligned_cols=212 Identities=17% Similarity=0.195 Sum_probs=165.2
Q ss_pred CcccceeEEEecCCCCCeeEecCCCccEEEEEccccceeeeeccCccceeE--ecccc----ccccccCcceEECcchhh
Q 000725 1057 CIYPCIVEMKRIPKCAPLVVGHNGFGEFGIWDISKRVLVSRFSAARASIYQ--FFPIN----LFSWQRNGSVSMDASLEL 1130 (1329)
Q Consensus 1057 ~v~p~I~elKrFpkss~lIVTgSGDgtf~LWDIskg~llqsF~ahs~sV~s--fsP~~----s~S~d~~v~tfd~~s~d~ 1130 (1329)
||+..+-++|. -+++..+++|+-|...-||-|.+=..+.+|.+|...|=+ |.+.+ .++-+|+|++||+.....
T Consensus 26 ~hsaav~~lk~-~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~ 104 (825)
T KOG0267|consen 26 AHSAAVGCLKI-RKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKI 104 (825)
T ss_pred hhhhhhceeee-eccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhh
Confidence 67777888844 788999999999999999999999999999999999999 88877 889999999999986664
Q ss_pred hc--cccccccccCCCceeecCCCCccceEEEE-eeccCccchhhccc----ccccCCCCcceeEEEeeeccceecCCCC
Q 000725 1131 TN--TATTSLFSKHSEKSSFCPSVGEDSAIWLL-VSTISDSDAQHNCM----SRDCQKNPVRFWRLALLVKNRVILGSPL 1203 (1329)
Q Consensus 1131 ~l--eatv~~fSgdvn~VsF~P~sGeD~AiwLL-VST~Sdd~t~~Dlr----a~~~~gH~n~~wRLALl~K~siI~Gs~l 1203 (1329)
.+ -.+.. +.-+|.|+| ++ |+. -++.+-+.++||.| .+.|.+|+...=
T Consensus 105 vrtLtgh~~----~~~sv~f~P-----~~-~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~---------------- 158 (825)
T KOG0267|consen 105 VRTLTGHLL----NITSVDFHP-----YG-EFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVD---------------- 158 (825)
T ss_pred hhhhhcccc----Ccceeeecc-----ce-EEeccccccccceehhhhccCceeeecCCcceeE----------------
Confidence 43 23333 455588999 23 444 34555666779999 778888664433
Q ss_pred CCCceeeecCCCeEEeecCCCeEEEEEccccceeeeeecccCceEEEEEecCCCCceEEEecCCCCCCccccCCCCCCCC
Q 000725 1204 DPRASAIGASSGLGIIGTNDGLVYAWELSSGNKLGILHHFKGGTVSCIATDDSGLQALAVAGDGPDGGRRQRDPRHGQND 1283 (1329)
Q Consensus 1204 dpra~afs~SG~~gfaGT~DGlVYmWDLstG~kL~tL~~Heg~rVSCVA~dps~p~~~AsA~d~~d~~~r~~~~~~s~D~ 1283 (1329)
...|+|.|++++.|++|..|.|||+--|+.+..+..|++ +|..+..||.+ ++.|++ |.|.
T Consensus 159 ---~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~-~v~sle~hp~e---~Lla~G-------------s~d~ 218 (825)
T KOG0267|consen 159 ---VLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEG-KVQSLEFHPLE---VLLAPG-------------SSDR 218 (825)
T ss_pred ---EEeecCCCceeeccCCcceeeeecccccccccccccccc-cccccccCchh---hhhccC-------------CCCc
Confidence 367899999999999999999999999999999999999 99999999655 455555 6666
Q ss_pred cEEEeeeC---------CCcceee----cCCCCcccceEEEeeec
Q 000725 1284 HVRIWKMD---------PNLGCVR----NSNGDSKFKQFQISIKE 1315 (1329)
Q Consensus 1284 ~VRiW~~~---------~~~~~~~----~~~~~~~~~~~~~~~~~ 1315 (1329)
+||+|++. |+++=|| |+.|-.-.---||+.+|
T Consensus 219 tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~sl~~ 263 (825)
T KOG0267|consen 219 TVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQISLSE 263 (825)
T ss_pred eeeeeccceeEEeeccCCccCCceeeeecCCceeeecCchhhhhh
Confidence 66666665 4554444 44454445556788876
No 117
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.36 E-value=8.9e-12 Score=145.82 Aligned_cols=244 Identities=17% Similarity=0.267 Sum_probs=177.1
Q ss_pred ceeeecCCCcEEEEecCccCccccCCCccccccccccccCCCCcEEEEEecCcceeeeEEEecc-cceeEEEEe-cCCeE
Q 000725 948 SCALFTPDGQYLVLLDSMKTPYCREGRSDCLCSTCTSHRLDENAVKIVKVKPGYVSVVAKLKTD-DCVQCILVC-EPKHL 1025 (1329)
Q Consensus 948 sglqFTPDGQ~LvLlgsik~p~CR~~~~dC~Cs~C~~s~seDNtVKIv~V~~G~vsll~kL~~h-~sV~cIlVc-DpnhL 1025 (1329)
..++|.|||--|+| -.++.|-|+|++.|. ++.+|+|| +.|.||+++ |+..+
T Consensus 16 ~d~afkPDGsqL~l-------------------------AAg~rlliyD~ndG~--llqtLKgHKDtVycVAys~dGkrF 68 (1081)
T KOG1538|consen 16 NDIAFKPDGTQLIL-------------------------AAGSRLLVYDTSDGT--LLQPLKGHKDTVYCVAYAKDGKRF 68 (1081)
T ss_pred heeEECCCCceEEE-------------------------ecCCEEEEEeCCCcc--cccccccccceEEEEEEccCCcee
Confidence 46899999977762 356789999999999 99999999 999999999 99999
Q ss_pred EEecCCCeEEEEeccCcceEEEeeeeecCCCCcccceeEEEecCCCCCeeEecCCCccEEEEEccccceeeeeccCccce
Q 000725 1026 IAVGESGKLHLWEMNSSWSAQVEECIIPINDCIYPCIVEMKRIPKCAPLVVGHNGFGEFGIWDISKRVLVSRFSAARASI 1105 (1329)
Q Consensus 1026 VSaSdDGkL~IWDM~SgWsm~tee~Vi~~n~~v~p~I~elKrFpkss~lIVTgSGDgtf~LWDIskg~llqsF~ahs~sV 1105 (1329)
+|++-|.-+|||.-. ---..-| .|.-.|.++ -|+++.|+++||+- ..|.+|--+..+-. . |.++
T Consensus 69 ASG~aDK~VI~W~~k--lEG~LkY-------SH~D~IQCM-sFNP~~h~LasCsL-sdFglWS~~qK~V~-K---~kss- 132 (1081)
T KOG1538|consen 69 ASGSADKSVIIWTSK--LEGILKY-------SHNDAIQCM-SFNPITHQLASCSL-SDFGLWSPEQKSVS-K---HKSS- 132 (1081)
T ss_pred ccCCCceeEEEeccc--ccceeee-------ccCCeeeEe-ecCchHHHhhhcch-hhccccChhhhhHH-h---hhhh-
Confidence 999999999999621 1112223 488899999 99999999999985 67999976543321 1 1121
Q ss_pred eEeccccccccccCcceEECc-----------chhhh----c-cccccccccCCCceeecCCCCccceEEEEeeccCccc
Q 000725 1106 YQFFPINLFSWQRNGSVSMDA-----------SLELT----N-TATTSLFSKHSEKSSFCPSVGEDSAIWLLVSTISDSD 1169 (1329)
Q Consensus 1106 ~sfsP~~s~S~d~~v~tfd~~-----------s~d~~----l-eatv~~fSgdvn~VsF~P~sGeD~AiwLLVST~Sdd~ 1169 (1329)
..+-+|||..++..+.++ .+|.+ | ++.+.++-+ +.|.|.+|+.+---+-|--++.
T Consensus 133 ---~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiws----i~~~p~sg~G~~di~aV~DW~q-- 203 (1081)
T KOG1538|consen 133 ---SRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWS----ICWNPSSGEGRNDILAVADWGQ-- 203 (1081)
T ss_pred ---eeEEEeeecCCCcEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceE----EEecCCCCCCccceEEEEeccc--
Confidence 223355565555555544 33444 3 456676666 9999988866332222222222
Q ss_pred hhhcccccccCCCCcceeEEEeeeccceecCC----CCCCCceeeecCCCeEEeecCCCeEEEEEccccceeeeeecccC
Q 000725 1170 AQHNCMSRDCQKNPVRFWRLALLVKNRVILGS----PLDPRASAIGASSGLGIIGTNDGLVYAWELSSGNKLGILHHFKG 1245 (1329)
Q Consensus 1170 t~~Dlra~~~~gH~n~~wRLALl~K~siI~Gs----~ldpra~afs~SG~~gfaGT~DGlVYmWDLstG~kL~tL~~Heg 1245 (1329)
-|..|.=..-.+|. -+||-....=++|-|+..|+.|+-++++ +-+|-+|+|+-.+.-
T Consensus 204 ------------------TLSFy~LsG~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~f-TR~GvrLGTvg~~D~ 264 (1081)
T KOG1538|consen 204 ------------------TLSFYQLSGKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLF-TRDGVRLGTVGEQDS 264 (1081)
T ss_pred ------------------eeEEEEecceeecccccCCCCchhheeccCCcEEEEccCCCceEEE-eecCeEEeeccccce
Confidence 23333333333341 3588888888999999999999999998 679999999998888
Q ss_pred ceEEEEEecCCCCceEEEe
Q 000725 1246 GTVSCIATDDSGLQALAVA 1264 (1329)
Q Consensus 1246 ~rVSCVA~dps~p~~~AsA 1264 (1329)
+++.|+++|...- ++++
T Consensus 265 -WIWtV~~~PNsQ~-v~~G 281 (1081)
T KOG1538|consen 265 -WIWTVQAKPNSQY-VVVG 281 (1081)
T ss_pred -eEEEEEEccCCce-EEEE
Confidence 9999999988776 5665
No 118
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.35 E-value=6.4e-12 Score=145.40 Aligned_cols=239 Identities=15% Similarity=0.285 Sum_probs=166.9
Q ss_pred ccCCCCcEEEEEe------cCcceeeeEEEecc-cceeEEEEe-cCCeEEEecCCCeEEEEeccCcceEEEee-e---ee
Q 000725 985 HRLDENAVKIVKV------KPGYVSVVAKLKTD-DCVQCILVC-EPKHLIAVGESGKLHLWEMNSSWSAQVEE-C---II 1052 (1329)
Q Consensus 985 s~seDNtVKIv~V------~~G~vsll~kL~~h-~sV~cIlVc-DpnhLVSaSdDGkL~IWDM~SgWsm~tee-~---Vi 1052 (1329)
+|++|++||+|++ +.+.++++-+|.|| +.|.||.|. ...|+.|+|-||+|+.|.|+.. +--.. | ++
T Consensus 311 t~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n--~dp~ds~dp~vl 388 (577)
T KOG0642|consen 311 TASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPN--QDPDDSYDPSVL 388 (577)
T ss_pred EeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCC--CCcccccCcchh
Confidence 8999999999998 45567999999999 999999999 9999999999999999977631 11111 1 11
Q ss_pred c-CCCCcccceeEEEecCCCCCeeEecCCCccEEEEEccccceeeeeccCccceeEeccccccccccCcceEECcchhhh
Q 000725 1053 P-INDCIYPCIVEMKRIPKCAPLVVGHNGFGEFGIWDISKRVLVSRFSAARASIYQFFPINLFSWQRNGSVSMDASLELT 1131 (1329)
Q Consensus 1053 ~-~n~~v~p~I~elKrFpkss~lIVTgSGDgtf~LWDIskg~llqsF~ahs~sV~sfsP~~s~S~d~~v~tfd~~s~d~~ 1131 (1329)
. ..-||+-+++.+ .+....+.++++|.|||+++|+...... .+|..+...-+-++-+ .-+.+..
T Consensus 389 ~~~l~Ghtdavw~l-~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd-------------~~ss~~a 453 (577)
T KOG0642|consen 389 SGTLLGHTDAVWLL-ALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVD-------------RTSSRPA 453 (577)
T ss_pred ccceeccccceeee-eecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEe-------------eccchhH
Confidence 1 112599999999 9999999999999999999999999888 6676655543221111 1111101
Q ss_pred ccccccccccCCCceeecCCCCccceEEEEeeccCccchhhcccccccCCCCcceeEEEeeeccceecCCCCCCC-----
Q 000725 1132 NTATTSLFSKHSEKSSFCPSVGEDSAIWLLVSTISDSDAQHNCMSRDCQKNPVRFWRLALLVKNRVILGSPLDPR----- 1206 (1329)
Q Consensus 1132 leatv~~fSgdvn~VsF~P~sGeD~AiwLLVST~Sdd~t~~Dlra~~~~gH~n~~wRLALl~K~siI~Gs~ldpr----- 1206 (1329)
+.+.. -+..|.++ +| -+...++ +||++--+|.
T Consensus 454 -----~~~~s--~~~~~~~~--~~------------~ev~s~~----------------------~~~~s~~~~~~~~~~ 490 (577)
T KOG0642|consen 454 -----HSLAS--FRFGYTSI--DD------------MEVVSDL----------------------LIFESSASPGPRRYP 490 (577)
T ss_pred -----hhhhh--cccccccc--hh------------hhhhhhe----------------------eeccccCCCcccccC
Confidence 00100 01112211 11 0000111 1111111111
Q ss_pred ---ceeeecCCCeEEeecCCCeEEEEEccccceeeeeecccCceEEEEEecCCCCceEEEecCCCCCCccccCCCCCCCC
Q 000725 1207 ---ASAIGASSGLGIIGTNDGLVYAWELSSGNKLGILHHFKGGTVSCIATDDSGLQALAVAGDGPDGGRRQRDPRHGQND 1283 (1329)
Q Consensus 1207 ---a~afs~SG~~gfaGT~DGlVYmWDLstG~kL~tL~~Heg~rVSCVA~dps~p~~~AsA~d~~d~~~r~~~~~~s~D~ 1283 (1329)
.+.--+.+...|++-+|+.|.+.|..+|..+..-.+|.. .|+|+|++|.++- ++++ +.|+
T Consensus 491 ~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~-svtslai~~ng~~-l~s~---------------s~d~ 553 (577)
T KOG0642|consen 491 QINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKD-SVTSLAIDPNGPY-LMSG---------------SHDG 553 (577)
T ss_pred ccceEEecCCCCeeEecccCCceecccccccccchheeeccc-eecceeecCCCce-EEee---------------cCCc
Confidence 144456778999999999999999999999999999999 8999999999887 7777 8899
Q ss_pred cEEEeeeCCCcceeecCC
Q 000725 1284 HVRIWKMDPNLGCVRNSN 1301 (1329)
Q Consensus 1284 ~VRiW~~~~~~~~~~~~~ 1301 (1329)
.||+|+.+-.+ ||-.++
T Consensus 554 sv~l~kld~k~-~~~es~ 570 (577)
T KOG0642|consen 554 SVRLWKLDVKT-CVLEST 570 (577)
T ss_pred eeehhhccchh-eeeccc
Confidence 99999987543 665444
No 119
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.34 E-value=4.8e-11 Score=135.98 Aligned_cols=316 Identities=16% Similarity=0.145 Sum_probs=204.8
Q ss_pred cccchhhhcchhhhhhcccCccceeeeecccccceeeeeeccCCeEEEEEEeccccccceEEEEEEeeeCCC---CCCCC
Q 000725 846 QVSSDLKLQKNVECINELAGTFDLMGCYFFPLPILSVLLSTTGDKIYVCVSCGFLVDKKRTLFIYTVDIQEP---RVGNP 922 (1329)
Q Consensus 846 q~~s~~~~~~~~~~~n~l~~~~~l~g~y~HpmpVlsv~l~t~~~ei~IcVlCG~L~~~~r~Lf~Yki~i~~~---~~~~p 922 (1329)
++..-=.+.|+...+=+..-..+|.--=.|-+||.|++|.-..--++=|---| +|--+.+...-- -...|
T Consensus 112 ~le~~Gr~~r~~a~~v~~~~s~~~~~~~~H~~s~~~vals~d~~~~fsask~g-------~i~kw~v~tgk~~~~i~~~~ 184 (479)
T KOG0299|consen 112 VLEQSGRVRRLVADKVQAPESSDFRVIGKHQLSVTSVALSPDDKRVFSASKDG-------TILKWDVLTGKKDRYIIERD 184 (479)
T ss_pred HHHhcceeehhhhhhccccccccceeeccccCcceEEEeeccccceeecCCCc-------ceeeeehhcCcccccccccc
Confidence 33333344555554444444555666668999999999975543344333323 222222211110 00000
Q ss_pred ceee-cccccccccccccccccccccceeeecCCCcEEEEecCccCccccCCCccccccccccccCCCCcEEEEEecCcc
Q 000725 923 SCVG-HTSVMLPFLKDNFGREIALERSCALFTPDGQYLVLLDSMKTPYCREGRSDCLCSTCTSHRLDENAVKIVKVKPGY 1001 (1329)
Q Consensus 923 ~~vg-~t~~llp~~~~~~~~~~~~ersglqFTPDGQ~LvLlgsik~p~CR~~~~dC~Cs~C~~s~seDNtVKIv~V~~G~ 1001 (1329)
-+.+ |- .|.-+.+ +.-.=|...++.+|||.||| +++.|+-|-||+..++.
T Consensus 185 ev~k~~~---~~~k~~r--~~h~keil~~avS~Dgkyla------------------------tgg~d~~v~Iw~~~t~e 235 (479)
T KOG0299|consen 185 EVLKSHG---NPLKESR--KGHVKEILTLAVSSDGKYLA------------------------TGGRDRHVQIWDCDTLE 235 (479)
T ss_pred hhhhhcc---CCCCccc--ccccceeEEEEEcCCCcEEE------------------------ecCCCceEEEecCcccc
Confidence 0000 00 0111111 11223567899999999999 99999999999999966
Q ss_pred eeeeEEEecc-cceeEEEEe-cCCeEEEecCCCeEEEEeccCcceEEEeeeeecCCCCcccceeEEEecCCCCCeeEecC
Q 000725 1002 VSVVAKLKTD-DCVQCILVC-EPKHLIAVGESGKLHLWEMNSSWSAQVEECIIPINDCIYPCIVEMKRIPKCAPLVVGHN 1079 (1329)
Q Consensus 1002 vsll~kL~~h-~sV~cIlVc-DpnhLVSaSdDGkL~IWDM~SgWsm~tee~Vi~~n~~v~p~I~elKrFpkss~lIVTgS 1079 (1329)
+++.|++| +.|.++++= -++.|+|+|.||++.+|.++----+.++| +|-..|..+ -...-...+--|+
T Consensus 236 --hv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetly-------GHqd~v~~I-daL~reR~vtVGg 305 (479)
T KOG0299|consen 236 --HVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLY-------GHQDGVLGI-DALSRERCVTVGG 305 (479)
T ss_pred --hhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHh-------CCccceeee-chhcccceEEecc
Confidence 99999999 999999999 88999999999999999988877777888 888888887 3333355555667
Q ss_pred CCccEEEEEccccceeeeeccCccceeE--ecccc---ccccccCcceEECcchhhhc-cccccccccCCCceeecCCCC
Q 000725 1080 GFGEFGIWDISKRVLVSRFSAARASIYQ--FFPIN---LFSWQRNGSVSMDASLELTN-TATTSLFSKHSEKSSFCPSVG 1153 (1329)
Q Consensus 1080 GDgtf~LWDIskg~llqsF~ahs~sV~s--fsP~~---s~S~d~~v~tfd~~s~d~~l-eatv~~fSgdvn~VsF~P~sG 1153 (1329)
-|.|.+||+|..- ---.|.+|.+++-+ |.-+. ++|-+|.|-+|++..-.-.. ..-.|++..
T Consensus 306 rDrT~rlwKi~ee-sqlifrg~~~sidcv~~In~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~------------ 372 (479)
T KOG0299|consen 306 RDRTVRLWKIPEE-SQLIFRGGEGSIDCVAFINDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIP------------ 372 (479)
T ss_pred ccceeEEEecccc-ceeeeeCCCCCeeeEEEecccceeeccCCceEEEeeecccCceeEeeccccccC------------
Confidence 9999999999443 34468888888777 43333 77888888888765321111 111111111
Q ss_pred ccceEEEEeeccCccchhhcccccccCCCCcceeEEEeeeccceecCCCCCCCceeeecCCCeEEeecCCCeEEEEEccc
Q 000725 1154 EDSAIWLLVSTISDSDAQHNCMSRDCQKNPVRFWRLALLVKNRVILGSPLDPRASAIGASSGLGIIGTNDGLVYAWELSS 1233 (1329)
Q Consensus 1154 eD~AiwLLVST~Sdd~t~~Dlra~~~~gH~n~~wRLALl~K~siI~Gs~ldpra~afs~SG~~gfaGT~DGlVYmWDLst 1233 (1329)
+ . +. .+.+ +|--+ ++.-+...++++|+.+|+|.+|-+..
T Consensus 373 -~------------~--------~~--~~~~-~Wits-----------------la~i~~sdL~asGS~~G~vrLW~i~~ 411 (479)
T KOG0299|consen 373 -E------------L--------DP--VNGN-FWITS-----------------LAVIPGSDLLASGSWSGCVRLWKIED 411 (479)
T ss_pred -C------------c--------cc--cccc-cceee-----------------eEecccCceEEecCCCCceEEEEecC
Confidence 1 0 00 0111 67744 67778889999999999999999999
Q ss_pred c----ceeeeeecccCceEEEEEecCCCCceEEE
Q 000725 1234 G----NKLGILHHFKGGTVSCIATDDSGLQALAV 1263 (1329)
Q Consensus 1234 G----~kL~tL~~Heg~rVSCVA~dps~p~~~As 1263 (1329)
| +-+..|. ..| -|..|++++++...+|-
T Consensus 412 g~r~i~~l~~ls-~~G-fVNsl~f~~sgk~ivag 443 (479)
T KOG0299|consen 412 GLRAINLLYSLS-LVG-FVNSLAFSNSGKRIVAG 443 (479)
T ss_pred Cccccceeeecc-ccc-EEEEEEEccCCCEEEEe
Confidence 9 3344444 667 78899999888753333
No 120
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.34 E-value=3.4e-11 Score=129.06 Aligned_cols=288 Identities=15% Similarity=0.212 Sum_probs=179.6
Q ss_pred hhcchhhhhhcccCccceeeeecccccceeeeeeccCCeEEEEEEeccccccceEEEEEEeeeCCCCCCCCceeeccccc
Q 000725 852 KLQKNVECINELAGTFDLMGCYFFPLPILSVLLSTTGDKIYVCVSCGFLVDKKRTLFIYTVDIQEPRVGNPSCVGHTSVM 931 (1329)
Q Consensus 852 ~~~~~~~~~n~l~~~~~l~g~y~HpmpVlsv~l~t~~~ei~IcVlCG~L~~~~r~Lf~Yki~i~~~~~~~p~~vg~t~~l 931 (1329)
+-....|.+|-|+..--.-+--|||--=|-- +-..+..+.||.-=-+..-+ ..-+.....|+ ++
T Consensus 18 ~~k~~f~~i~~l~dsqairav~fhp~g~lya-vgsnskt~ric~yp~l~~~r---------~~hea~~~pp~------v~ 81 (350)
T KOG0641|consen 18 KEKKHFEAINILEDSQAIRAVAFHPAGGLYA-VGSNSKTFRICAYPALIDLR---------HAHEAAKQPPS------VL 81 (350)
T ss_pred ccccceEEEEEecchhheeeEEecCCCceEE-eccCCceEEEEccccccCcc---------cccccccCCCe------EE
Confidence 4445567888888877777778898765432 22223347777522111100 01122223333 22
Q ss_pred ccccccccccccc--cccceeeecCCCcEEEEecCc-c----Ccc----ccC-----------CCccccccccccccCCC
Q 000725 932 LPFLKDNFGREIA--LERSCALFTPDGQYLVLLDSM-K----TPY----CRE-----------GRSDCLCSTCTSHRLDE 989 (1329)
Q Consensus 932 lp~~~~~~~~~~~--~ersglqFTPDGQ~LvLlgsi-k----~p~----CR~-----------~~~dC~Cs~C~~s~seD 989 (1329)
|-|+-- =...+.+|+|+||+|+ .||- | +|+ |.- |.+- -+|-+...+.
T Consensus 82 -------~kr~khhkgsiyc~~ws~~gelia-tgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtir---dl~fld~~~s 150 (350)
T KOG0641|consen 82 -------CKRNKHHKGSIYCTAWSPCGELIA-TGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIR---DLAFLDDPES 150 (350)
T ss_pred -------eeeccccCccEEEEEecCccCeEE-ecCCCceEEEEecccccccccCcceeeeecCCcee---eeEEecCCCc
Confidence 222221 2456899999999999 4431 1 121 110 0000 0111111111
Q ss_pred ----------CcEEEEEecCcceeeeEEEecc-cceeEEEEecCCeEEEecCCCeEEEEeccCcceEEEeeeeecCCCC-
Q 000725 990 ----------NAVKIVKVKPGYVSVVAKLKTD-DCVQCILVCEPKHLIAVGESGKLHLWEMNSSWSAQVEECIIPINDC- 1057 (1329)
Q Consensus 990 ----------NtVKIv~V~~G~vsll~kL~~h-~sV~cIlVcDpnhLVSaSdDGkL~IWDM~SgWsm~tee~Vi~~n~~- 1057 (1329)
+--|||--..|.--.++.|.+| +-+..+---.+.-++|+|||.+|+.||+.-.-++.+..-.--+ ++
T Consensus 151 ~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~-~gl 229 (350)
T KOG0641|consen 151 GGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHD-GGL 229 (350)
T ss_pred CceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccC-CCc
Confidence 1123333333333378888898 7777665558899999999999999997766666665411111 11
Q ss_pred cccceeEEEecCCCCCeeEecCCCccEEEEEccccceeeeeccCccceeE--ecccc----ccccccCcceEECcchhhh
Q 000725 1058 IYPCIVEMKRIPKCAPLVVGHNGFGEFGIWDISKRVLVSRFSAARASIYQ--FFPIN----LFSWQRNGSVSMDASLELT 1131 (1329)
Q Consensus 1058 v~p~I~elKrFpkss~lIVTgSGDgtf~LWDIskg~llqsF~ahs~sV~s--fsP~~----s~S~d~~v~tfd~~s~d~~ 1131 (1329)
-++-+-.| .+-+.+.++++|-.|..|.|+||.-|..+|+|+.|+.+|-+ |+|-- +||+|-.|++-++- +|+.
T Consensus 230 essavaav-~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlq-gdla 307 (350)
T KOG0641|consen 230 ESSAVAAV-AVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQ-GDLA 307 (350)
T ss_pred ccceeEEE-EECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecc-cchh
Confidence 22334445 99999999999999999999999999999999999999999 99987 89999999998874 3444
Q ss_pred cccccccccc---CCCceeecCCCCccceEEEEeeccCccchhhcc
Q 000725 1132 NTATTSLFSK---HSEKSSFCPSVGEDSAIWLLVSTISDSDAQHNC 1174 (1329)
Q Consensus 1132 leatv~~fSg---dvn~VsF~P~sGeD~AiwLLVST~Sdd~t~~Dl 1174 (1329)
-+-..+-|-+ +...++++| .||. ++.|+++.+.++|-+
T Consensus 308 ~el~~~vv~ehkdk~i~~rwh~---~d~s--fisssadkt~tlwa~ 348 (350)
T KOG0641|consen 308 HELPIMVVAEHKDKAIQCRWHP---QDFS--FISSSADKTATLWAL 348 (350)
T ss_pred hcCceEEEEeccCceEEEEecC---ccce--eeeccCcceEEEecc
Confidence 1222333333 444589999 5765 778888888888754
No 121
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.32 E-value=2.4e-11 Score=143.11 Aligned_cols=307 Identities=16% Similarity=0.172 Sum_probs=204.3
Q ss_pred ccceeeecCCCcEEEEecCccCccccCCCccccccccccccCCCCcEEEEEecCcceeeeEEEecc-cceeEEEEe-cCC
Q 000725 946 ERSCALFTPDGQYLVLLDSMKTPYCREGRSDCLCSTCTSHRLDENAVKIVKVKPGYVSVVAKLKTD-DCVQCILVC-EPK 1023 (1329)
Q Consensus 946 ersglqFTPDGQ~LvLlgsik~p~CR~~~~dC~Cs~C~~s~seDNtVKIv~V~~G~vsll~kL~~h-~sV~cIlVc-Dpn 1023 (1329)
..++|+|+|+|+|++ +..|+---++|+|+++.-. ++++|.-| +.|-||++. .+.
T Consensus 80 ~~t~vAfS~~Gryva----------------------tGEcG~~pa~kVw~la~h~--vVAEfvdHKY~vtcvaFsp~~k 135 (1080)
T KOG1408|consen 80 PLTCVAFSQNGRYVA----------------------TGECGRTPASKVWSLAFHG--VVAEFVDHKYNVTCVAFSPGNK 135 (1080)
T ss_pred ceeEEEEcCCCcEEE----------------------ecccCCCccceeeeecccc--chhhhhhccccceeeeecCCCc
Confidence 458999999999999 3456777899999999955 99999999 999999999 999
Q ss_pred eEEEecCCCeEE--EEeccCcceEEEee------eeecCCCC---cccceeEEE--------------------------
Q 000725 1024 HLIAVGESGKLH--LWEMNSSWSAQVEE------CIIPINDC---IYPCIVEMK-------------------------- 1066 (1329)
Q Consensus 1024 hLVSaSdDGkL~--IWDM~SgWsm~tee------~Vi~~n~~---v~p~I~elK-------------------------- 1066 (1329)
||||+|--.-.+ +||-.-.-+|+... .|+.+-+| +...+.-+|
T Consensus 136 yvvSVGsQHDMIVnv~dWr~N~~~asnkiss~Vsav~fsEdgSYfvT~gnrHvk~wyl~~~~KykdpiPl~gRs~~lg~l 215 (1080)
T KOG1408|consen 136 YVVSVGSQHDMIVNVNDWRVNSSGASNKISSVVSAVAFSEDGSYFVTSGNRHVKLWYLQIQSKYKDPIPLPGRSYFLGNL 215 (1080)
T ss_pred EEEeeccccceEEEhhhhhhcccccccccceeEEEEEEccCCceeeeeeeeeEEEEEeeccccccCCccccchhhhcccc
Confidence 999999766554 46511111111111 12222222 111111110
Q ss_pred --------------------ecC-----------------------------CCCCeeEecCCCccEEEEEccccceeee
Q 000725 1067 --------------------RIP-----------------------------KCAPLVVGHNGFGEFGIWDISKRVLVSR 1097 (1329)
Q Consensus 1067 --------------------rFp-----------------------------kss~lIVTgSGDgtf~LWDIskg~llqs 1097 (1329)
++. =+..+|+-|-.+|+++|+.-++-..+.+
T Consensus 216 r~n~f~avaCg~gicAestfait~qGhLvEFSsRRLLDKWVqcRTTnAnCIcVs~r~I~cgCa~g~vrlFnp~tL~y~~T 295 (1080)
T KOG1408|consen 216 RFNEFLAVACGVGICAESTFAITAQGHLVEFSSRRLLDKWVQCRTTNANCICVSSRLIACGCAKGMVRLFNPETLDYAGT 295 (1080)
T ss_pred ccchhhhhhhcCcccccceEEEecccceeeechhhhhhhhhhhhccccceeeeecceEEEeeccceeeecCcchhhhccc
Confidence 111 1567899999999999998776544332
Q ss_pred ---eccCccceeE--------------ecccc-cccc------------ccCcceEECcchhhh------c--ccccccc
Q 000725 1098 ---FSAARASIYQ--------------FFPIN-LFSW------------QRNGSVSMDASLELT------N--TATTSLF 1139 (1329)
Q Consensus 1098 ---F~ahs~sV~s--------------fsP~~-s~S~------------d~~v~tfd~~s~d~~------l--eatv~~f 1139 (1329)
=|+-+.+|-+ .+|+- .+.+ |..+-+||++++.+- + -+|+-.|
T Consensus 296 lpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~V 375 (1080)
T KOG1408|consen 296 LPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDV 375 (1080)
T ss_pred cccccccccchhhcccccccccccCcccCCceeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeee
Confidence 2333333222 44544 3333 345779999998876 2 1332222
Q ss_pred cc-----CCCceeecCCCCccceEEEEeeccCccchhhcccccccCCCCcceeEEEeeeccce-----------------
Q 000725 1140 SK-----HSEKSSFCPSVGEDSAIWLLVSTISDSDAQHNCMSRDCQKNPVRFWRLALLVKNRV----------------- 1197 (1329)
Q Consensus 1140 Sg-----dvn~VsF~P~sGeD~AiwLLVST~Sdd~t~~Dlra~~~~gH~n~~wRLALl~K~si----------------- 1197 (1329)
+- +...-.-.|. . ++..-+-++++++||+..-+ +|..||=..|.++-+
T Consensus 376 e~~p~nv~~~~~aclp~---~---cF~TCSsD~TIRlW~l~~ct----nn~vyrRNils~~l~ki~y~d~~~q~~~d~~~ 445 (1080)
T KOG1408|consen 376 ENLPCNVHSPTAACLPR---G---CFTTCSSDGTIRLWDLAFCT----NNQVYRRNILSANLSKIPYEDSTQQIMHDASA 445 (1080)
T ss_pred ccccccccCcccccCCc---c---ceeEecCCCcEEEeeccccc----ccceeecccchhhhhcCccccCchhhhhhccC
Confidence 21 2222233331 1 23433556667779998744 667777777766532
Q ss_pred -ec----CCCCCC----CceeeecCCCeEEeecCCCeEEEEEccccceeeeeecccCceEEEEEecCCC--CceEEEecC
Q 000725 1198 -IL----GSPLDP----RASAIGASSGLGIIGTNDGLVYAWELSSGNKLGILHHFKGGTVSCIATDDSG--LQALAVAGD 1266 (1329)
Q Consensus 1198 -I~----Gs~ldp----ra~afs~SG~~gfaGT~DGlVYmWDLstG~kL~tL~~Heg~rVSCVA~dps~--p~~~AsA~d 1266 (1329)
|| -+-+|| |++++++.|.|+++|.--|+++++||..=+-+.+.++|+. .|.|+.++--+ ..-+|+|
T Consensus 446 ~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHes-EilcLeyS~p~~~~kLLASa-- 522 (1080)
T KOG1408|consen 446 GIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHES-EILCLEYSFPVLTNKLLASA-- 522 (1080)
T ss_pred CcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccc-eeEEEeecCchhhhHhhhhc--
Confidence 11 112344 7899999999999999999999999999999999999999 89999998433 3446788
Q ss_pred CCCCCccccCCCCCCCCcEEEeeeCCCcceeecCCC
Q 000725 1267 GPDGGRRQRDPRHGQNDHVRIWKMDPNLGCVRNSNG 1302 (1329)
Q Consensus 1267 ~~d~~~r~~~~~~s~D~~VRiW~~~~~~~~~~~~~~ 1302 (1329)
|-|.-|+|+++..|.--+..-.|
T Consensus 523 -------------srdRlIHV~Dv~rny~l~qtld~ 545 (1080)
T KOG1408|consen 523 -------------SRDRLIHVYDVKRNYDLVQTLDG 545 (1080)
T ss_pred -------------cCCceEEEEecccccchhhhhcc
Confidence 88999999999998876655544
No 122
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=7e-11 Score=136.95 Aligned_cols=216 Identities=12% Similarity=0.104 Sum_probs=167.3
Q ss_pred CCCCcEEEEEecCcceeeeEEEecccceeEEEEe-cCCeEEEecCCCeEEEEeccCcceEEEeeeeecCCCC-cccceeE
Q 000725 987 LDENAVKIVKVKPGYVSVVAKLKTDDCVQCILVC-EPKHLIAVGESGKLHLWEMNSSWSAQVEECIIPINDC-IYPCIVE 1064 (1329)
Q Consensus 987 seDNtVKIv~V~~G~vsll~kL~~h~sV~cIlVc-DpnhLVSaSdDGkL~IWDM~SgWsm~tee~Vi~~n~~-v~p~I~e 1064 (1329)
+....|-+|+..+|.+..+..+. -+.|-+|.++ |.+||+.+-.+|.|.|||..+-=.++... + |.+-|.+
T Consensus 194 alg~~vylW~~~s~~v~~l~~~~-~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~-------~~h~~rvg~ 265 (484)
T KOG0305|consen 194 ALGQSVYLWSASSGSVTELCSFG-EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLR-------GSHASRVGS 265 (484)
T ss_pred EecceEEEEecCCCceEEeEecC-CCceEEEEECCCCCEEEEeecCCeEEEEehhhcccccccc-------CCcCceeEE
Confidence 55667999999999977777766 6899999999 99999999999999999988766666666 6 8888988
Q ss_pred EEecCCCCCeeEecCCCccEEEEEccccceeee-eccCccceeE--ecccc----ccccccCcceEECcchhhhcccccc
Q 000725 1065 MKRIPKCAPLVVGHNGFGEFGIWDISKRVLVSR-FSAARASIYQ--FFPIN----LFSWQRNGSVSMDASLELTNTATTS 1137 (1329)
Q Consensus 1065 lKrFpkss~lIVTgSGDgtf~LWDIskg~llqs-F~ahs~sV~s--fsP~~----s~S~d~~v~tfd~~s~d~~leatv~ 1137 (1329)
+ .-+ ++.+.+|+.|+.|-.|||...+.+.+ ..+|.-.|.. ++|++ ++.-|..+.+|+..+-+-
T Consensus 266 l-aW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p------- 335 (484)
T KOG0305|consen 266 L-AWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEP------- 335 (484)
T ss_pred E-ecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccc-------
Confidence 8 554 89999999999999999999998666 9999999998 89998 455555555555522111
Q ss_pred ccccCCCceeecCCCCccceEEEEeeccCccchhhcccccccCCCCcceeEEEeeeccceecCCCCCCCceeeecCCCeE
Q 000725 1138 LFSKHSEKSSFCPSVGEDSAIWLLVSTISDSDAQHNCMSRDCQKNPVRFWRLALLVKNRVILGSPLDPRASAIGASSGLG 1217 (1329)
Q Consensus 1138 ~fSgdvn~VsF~P~sGeD~AiwLLVST~Sdd~t~~Dlra~~~~gH~n~~wRLALl~K~siI~Gs~ldpra~afs~SG~~g 1217 (1329)
..+|..|.+++.-||. +|.=+..+|.+
T Consensus 336 --------------------------------------~~~~~~H~aAVKA~aw---------cP~q~~lLAsG------ 362 (484)
T KOG0305|consen 336 --------------------------------------KFTFTEHTAAVKALAW---------CPWQSGLLATG------ 362 (484)
T ss_pred --------------------------------------cEEEeccceeeeEeee---------CCCccCceEEc------
Confidence 2244455555554442 11112222222
Q ss_pred EeecCCCeEEEEEccccceeeeeecccCceEEEEEecCCCCceEEEecCCCCCCccccCC
Q 000725 1218 IIGTNDGLVYAWELSSGNKLGILHHFKGGTVSCIATDDSGLQALAVAGDGPDGGRRQRDP 1277 (1329)
Q Consensus 1218 faGT~DGlVYmWDLstG~kL~tL~~Heg~rVSCVA~dps~p~~~AsA~d~~d~~~r~~~~ 1277 (1329)
.|+.|++|++||+.+|+++..+....- |..|+.++.-.. ++++-+-.+.-++||.+
T Consensus 363 -GGs~D~~i~fwn~~~g~~i~~vdtgsQ--VcsL~Wsk~~kE-i~sthG~s~n~i~lw~~ 418 (484)
T KOG0305|consen 363 -GGSADRCIKFWNTNTGARIDSVDTGSQ--VCSLIWSKKYKE-LLSTHGYSENQITLWKY 418 (484)
T ss_pred -CCCcccEEEEEEcCCCcEecccccCCc--eeeEEEcCCCCE-EEEecCCCCCcEEEEec
Confidence 489999999999999999999987765 999999977777 88888877777888876
No 123
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.30 E-value=9.9e-11 Score=127.58 Aligned_cols=233 Identities=9% Similarity=0.060 Sum_probs=165.4
Q ss_pred EEecc-cceeEEEEe-cCCeEEEecCCCeEEEEeccCcceEEEeeeeecCCCCcccceeEEEecCCCCCeeEecCCCccE
Q 000725 1007 KLKTD-DCVQCILVC-EPKHLIAVGESGKLHLWEMNSSWSAQVEECIIPINDCIYPCIVEMKRIPKCAPLVVGHNGFGEF 1084 (1329)
Q Consensus 1007 kL~~h-~sV~cIlVc-DpnhLVSaSdDGkL~IWDM~SgWsm~tee~Vi~~n~~v~p~I~elKrFpkss~lIVTgSGDgtf 1084 (1329)
.|+|| ..+--|-.. |..-|.|++.|.+.-||-.--|-+.-++. ||...|+++ .+...+..++|||+|.++
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~-------GHtGavW~~-Did~~s~~liTGSAD~t~ 76 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYD-------GHTGAVWCC-DIDWDSKHLITGSADQTA 76 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeec-------CCCceEEEE-EecCCcceeeecccccee
Confidence 47889 889999999 99999999999999999998999999999 999999999 999999999999999999
Q ss_pred EEEEccccceeeeeccCccceeE-eccccccccccCcceEECcchhhhccccccccccCCCceeecCCCCccceEEEEee
Q 000725 1085 GIWDISKRVLVSRFSAARASIYQ-FFPINLFSWQRNGSVSMDASLELTNTATTSLFSKHSEKSSFCPSVGEDSAIWLLVS 1163 (1329)
Q Consensus 1085 ~LWDIskg~llqsF~ahs~sV~s-fsP~~s~S~d~~v~tfd~~s~d~~leatv~~fSgdvn~VsF~P~sGeD~AiwLLVS 1163 (1329)
+||||++|+.+.++.-.+.---. |++.+ +..++.+ |+.++ .++ .|.+
T Consensus 77 kLWDv~tGk~la~~k~~~~Vk~~~F~~~g------n~~l~~t---D~~mg-----~~~---~v~~--------------- 124 (327)
T KOG0643|consen 77 KLWDVETGKQLATWKTNSPVKRVDFSFGG------NLILAST---DKQMG-----YTC---FVSV--------------- 124 (327)
T ss_pred EEEEcCCCcEEEEeecCCeeEEEeeccCC------cEEEEEe---hhhcC-----cce---EEEE---------------
Confidence 99999999999999855432212 55554 2222221 22221 111 0111
Q ss_pred ccCccchhhcccccccCCCCcceeEEEeeeccceecCCCCCCCceeeecCCCeEEeecCCCeEEEEEccccceee-eeec
Q 000725 1164 TISDSDAQHNCMSRDCQKNPVRFWRLALLVKNRVILGSPLDPRASAIGASSGLGIIGTNDGLVYAWELSSGNKLG-ILHH 1242 (1329)
Q Consensus 1164 T~Sdd~t~~Dlra~~~~gH~n~~wRLALl~K~siI~Gs~ldpra~afs~SG~~gfaGT~DGlVYmWDLstG~kL~-tL~~ 1242 (1329)
+|+|-+.-+.-.+.-+ +.+.+.++ -++.+-.++.|.++|+|-+||.|..||+.+|..+- .-+-
T Consensus 125 --------fdi~~~~~~~~s~ep~-~kI~t~~s-------kit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~ 188 (327)
T KOG0643|consen 125 --------FDIRDDSSDIDSEEPY-LKIPTPDS-------KITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEE 188 (327)
T ss_pred --------EEccCChhhhcccCce-EEecCCcc-------ceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhh
Confidence 2222100000011101 12223332 23557789999999999999999999999995554 4477
Q ss_pred ccCceEEEEEecCCCCceEEEecCCCCCCccccCCCCCCCCcEEEeeeCCCcceeecCC
Q 000725 1243 FKGGTVSCIATDDSGLQALAVAGDGPDGGRRQRDPRHGQNDHVRIWKMDPNLGCVRNSN 1301 (1329)
Q Consensus 1243 Heg~rVSCVA~dps~p~~~AsA~d~~d~~~r~~~~~~s~D~~VRiW~~~~~~~~~~~~~ 1301 (1329)
|+. .++.++.+|.+. -.-+++-|.|-++||- ..=..++.|.++..+.|+--++
T Consensus 189 h~~-~Ind~q~s~d~T---~FiT~s~Dttakl~D~--~tl~v~Kty~te~PvN~aaisP 241 (327)
T KOG0643|consen 189 HSS-KINDLQFSRDRT---YFITGSKDTTAKLVDV--RTLEVLKTYTTERPVNTAAISP 241 (327)
T ss_pred hcc-ccccccccCCcc---eEEecccCccceeeec--cceeeEEEeeecccccceeccc
Confidence 777 799999995554 3444577888888887 3346778888888877776555
No 124
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.30 E-value=4.4e-12 Score=150.27 Aligned_cols=184 Identities=11% Similarity=0.150 Sum_probs=153.6
Q ss_pred ccCCCCcEEEEEecCcc-eeeeEEEecc-cceeEEEEe--cCCeEEEecCCCeEEEEeccCcceEEEeeeeecCCCCccc
Q 000725 985 HRLDENAVKIVKVKPGY-VSVVAKLKTD-DCVQCILVC--EPKHLIAVGESGKLHLWEMNSSWSAQVEECIIPINDCIYP 1060 (1329)
Q Consensus 985 s~seDNtVKIv~V~~G~-vsll~kL~~h-~sV~cIlVc--DpnhLVSaSdDGkL~IWDM~SgWsm~tee~Vi~~n~~v~p 1060 (1329)
.|+--+.|-+||+..-. --+++-|.-| .+|+++-|. +|++|+|+||||+|++|||.+.=+..+++ |-+-
T Consensus 105 T~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~-------~nSE 177 (839)
T KOG0269|consen 105 TCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFR-------SNSE 177 (839)
T ss_pred eecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccccccccc-------ccch
Confidence 88888999999998822 2367788999 999999988 99999999999999999999999999999 8888
Q ss_pred ceeEEEecCCCCCeeEecCCCccEEEEEccc-cceeeeeccCccceeE--ecccc----ccccccCcceEECcchhhhc-
Q 000725 1061 CIVEMKRIPKCAPLVVGHNGFGEFGIWDISK-RVLVSRFSAARASIYQ--FFPIN----LFSWQRNGSVSMDASLELTN- 1132 (1329)
Q Consensus 1061 ~I~elKrFpkss~lIVTgSGDgtf~LWDIsk-g~llqsF~ahs~sV~s--fsP~~----s~S~d~~v~tfd~~s~d~~l- 1132 (1329)
+|-+||=.|..+...+++.--|++.+|||+. .++..-|.||.+.|++ +.|+. +|.=|+.|++|+..+.+..+
T Consensus 178 SiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~ 257 (839)
T KOG0269|consen 178 SIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPK 257 (839)
T ss_pred hhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccce
Confidence 8889977777888999999999999999986 4559999999999999 99987 88899999999999988883
Q ss_pred --cccccccccCCCceeecCCCCccceEEEEeeccCccchh---hccc-----ccccCCCCc
Q 000725 1133 --TATTSLFSKHSEKSSFCPSVGEDSAIWLLVSTISDSDAQ---HNCM-----SRDCQKNPV 1184 (1329)
Q Consensus 1133 --eatv~~fSgdvn~VsF~P~sGeD~AiwLLVST~Sdd~t~---~Dlr-----a~~~~gH~n 1184 (1329)
..|+.+|-+ |+|-| +-- -.|.++....++- ||+| .-+|.-|..
T Consensus 258 ~tInTiapv~r----VkWRP----~~~-~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~ 310 (839)
T KOG0269|consen 258 HTINTIAPVGR----VKWRP----ARS-YHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTD 310 (839)
T ss_pred eEEeecceeee----eeecc----Ccc-chhhhhhccccceEEEEeeccccccceeeeccCc
Confidence 577777777 99999 422 4444444444443 9999 555555654
No 125
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.30 E-value=1.2e-11 Score=146.70 Aligned_cols=237 Identities=19% Similarity=0.179 Sum_probs=172.2
Q ss_pred eEEEecccceeEEEEe-cCCeEEEecCCCeEEEEeccCcceEEEeeeee--cCCCCcccceeEEEecCCCCCeeEecCCC
Q 000725 1005 VAKLKTDDCVQCILVC-EPKHLIAVGESGKLHLWEMNSSWSAQVEECII--PINDCIYPCIVEMKRIPKCAPLVVGHNGF 1081 (1329)
Q Consensus 1005 l~kL~~h~sV~cIlVc-DpnhLVSaSdDGkL~IWDM~SgWsm~tee~Vi--~~n~~v~p~I~elKrFpkss~lIVTgSGD 1081 (1329)
.-+++++. ..|-++ |-+.||-+| --.|.|.-.++-=. .+.+.+ -......-++..||-=.-.+++|+|++--
T Consensus 35 ~~~~k~~~--nAIs~nr~~~qiv~AG-rs~lklyai~~~~~--~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~n 109 (839)
T KOG0269|consen 35 NCKLKAKA--NAISVNRDINQIVVAG-RSLLKLYAINPNDF--SEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTN 109 (839)
T ss_pred eeeccccc--ceEeecCCcceeEEec-ccceeeEeeCcccC--CcceeeecccccceeeehhhcccccchhhhheeecCC
Confidence 34455553 456777 888998888 44667776555211 111000 01111223344455336678999999999
Q ss_pred ccEEEEEccc--cc-eeeeeccCccceeE--ecccc-----ccccccCcceEECcchhhhccccccccccCCCc---eee
Q 000725 1082 GEFGIWDISK--RV-LVSRFSAARASIYQ--FFPIN-----LFSWQRNGSVSMDASLELTNTATTSLFSKHSEK---SSF 1148 (1329)
Q Consensus 1082 gtf~LWDIsk--g~-llqsF~ahs~sV~s--fsP~~-----s~S~d~~v~tfd~~s~d~~leatv~~fSgdvn~---VsF 1148 (1329)
|.|.+|||.+ |+ +++.|..|.-+|.. |.+.+ ++|.||.|+.||++.-+-+ +.|++..++ |.|
T Consensus 110 G~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~-----~t~~~nSESiRDV~f 184 (839)
T KOG0269|consen 110 GVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSK-----STFRSNSESIRDVKF 184 (839)
T ss_pred CcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccccc-----ccccccchhhhceee
Confidence 9999999999 44 48999999999999 88888 8999999999999887765 223332222 899
Q ss_pred cCCCCccceEEEEeeccCccchh--hccc-----ccccCCCCcceeEEEeeeccceecCCCCCCCceeeecCCCeEEeec
Q 000725 1149 CPSVGEDSAIWLLVSTISDSDAQ--HNCM-----SRDCQKNPVRFWRLALLVKNRVILGSPLDPRASAIGASSGLGIIGT 1221 (1329)
Q Consensus 1149 ~P~sGeD~AiwLLVST~Sdd~t~--~Dlr-----a~~~~gH~n~~wRLALl~K~siI~Gs~ldpra~afs~SG~~gfaGT 1221 (1329)
+|..+.-|| ++.|..++ ||+| ..++.-|.+-.++ +...|++.++++|+
T Consensus 185 sp~~~~~F~------s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c-------------------~nwhPnr~~lATGG 239 (839)
T KOG0269|consen 185 SPGYGNKFA------SIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLC-------------------LNWHPNREWLATGG 239 (839)
T ss_pred ccCCCceEE------EecCCceEEEeeccCchhHHHHhhcccCceEE-------------------EeecCCCceeeecC
Confidence 997666666 66666655 9999 6667788888888 56789999999999
Q ss_pred CCCeEEEEEccccceeeeeecccCceEEEEEecCCCCceEEEecCCCCCCccccC
Q 000725 1222 NDGLVYAWELSSGNKLGILHHFKGGTVSCIATDDSGLQALAVAGDGPDGGRRQRD 1276 (1329)
Q Consensus 1222 ~DGlVYmWDLstG~kL~tL~~Heg~rVSCVA~dps~p~~~AsA~d~~d~~~r~~~ 1276 (1329)
-|+.|++||.-+++.-..+-=|+.-.|.||+.-|..+.-+|+++-..|+-++|||
T Consensus 240 RDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWD 294 (839)
T KOG0269|consen 240 RDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWD 294 (839)
T ss_pred CCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEe
Confidence 9999999999887776666667777899999999998778888654444444444
No 126
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.29 E-value=3.1e-11 Score=137.11 Aligned_cols=268 Identities=15% Similarity=0.262 Sum_probs=180.2
Q ss_pred CCCCCceeecccccccccccccccccccccceeeecCCCcEEEEecCccCccccCCCccccccccccccCCCCcEEEEEe
Q 000725 918 RVGNPSCVGHTSVMLPFLKDNFGREIALERSCALFTPDGQYLVLLDSMKTPYCREGRSDCLCSTCTSHRLDENAVKIVKV 997 (1329)
Q Consensus 918 ~~~~p~~vg~t~~llp~~~~~~~~~~~~ersglqFTPDGQ~LvLlgsik~p~CR~~~~dC~Cs~C~~s~seDNtVKIv~V 997 (1329)
...-|| |.+|.-++- --|+--++--|+-..|+ |.-...+...|-+|=-
T Consensus 110 ne~DPY------vt~~d~e~d-----eee~de~~V~psDnlIl---------------------~ar~eddvs~LEvYVy 157 (463)
T KOG0270|consen 110 NEKDPY------VTIPDDEDD-----EEEKDEEQVKPSDNLIL---------------------CARNEDDVSYLEVYVY 157 (463)
T ss_pred CCCCCc------cccCCcccc-----hhhcccceeccCCcEEE---------------------EeeccCCceEEEEEEE
Confidence 334677 666654432 12345567778666666 5557778888888765
Q ss_pred cCcceeeeEEEecc-c----ce-eEEEEe--------cCCeEEEecCCCeEEEEec---cCcceEEEeeeee--------
Q 000725 998 KPGYVSVVAKLKTD-D----CV-QCILVC--------EPKHLIAVGESGKLHLWEM---NSSWSAQVEECII-------- 1052 (1329)
Q Consensus 998 ~~G~vsll~kL~~h-~----sV-~cIlVc--------DpnhLVSaSdDGkL~IWDM---~SgWsm~tee~Vi-------- 1052 (1329)
+.+- ..|--| + +- .||.|- -+|+++-+..|..|.|||+ ++---..++--.+
T Consensus 158 n~~e----~nlYvHHD~ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~ 233 (463)
T KOG0270|consen 158 NEEE----ENLYVHHDFILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKG 233 (463)
T ss_pred cCCC----cceeEecceeccCcchhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhc
Confidence 5443 122222 1 11 566553 3689999999999999993 3311111111000
Q ss_pred ---cCCCCcccceeEEEecCCC-CCeeEecCCCccEEEEEccccceeeeeccCccceeEeccccccccccCcceEECcch
Q 000725 1053 ---PINDCIYPCIVEMKRIPKC-APLVVGHNGFGEFGIWDISKRVLVSRFSAARASIYQFFPINLFSWQRNGSVSMDASL 1128 (1329)
Q Consensus 1053 ---~~n~~v~p~I~elKrFpks-s~lIVTgSGDgtf~LWDIskg~llqsF~ahs~sV~sfsP~~s~S~d~~v~tfd~~s~ 1128 (1329)
-...+|.--++.| .++++ -+++++||.|.|+.|||+++|++.+++..|+.-|.+
T Consensus 234 k~~~~~~gHTdavl~L-s~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~--------------------- 291 (463)
T KOG0270|consen 234 KRSNSASGHTDAVLAL-SWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQT--------------------- 291 (463)
T ss_pred ccccccccchHHHHHH-HhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeE---------------------
Confidence 0111355555555 55554 357889999999999999999999999988876443
Q ss_pred hhhccccccccccCCCceeecCCCCccceEEEEeeccCccchhhcccccccCCCCcceeEEEeeeccceecCCCCCCCce
Q 000725 1129 ELTNTATTSLFSKHSEKSSFCPSVGEDSAIWLLVSTISDSDAQHNCMSRDCQKNPVRFWRLALLVKNRVILGSPLDPRAS 1208 (1329)
Q Consensus 1129 d~~leatv~~fSgdvn~VsF~P~sGeD~AiwLLVST~Sdd~t~~Dlra~~~~gH~n~~wRLALl~K~siI~Gs~ldpra~ 1208 (1329)
+.|+| --+..||.|+.+....+.|+|- ..|....|+...=+-+ + ..||
T Consensus 292 -----------------l~wh~----~~p~~LLsGs~D~~V~l~D~R~---~~~s~~~wk~~g~VEk-v----~w~~--- 339 (463)
T KOG0270|consen 292 -----------------LEWHP----YEPSVLLSGSYDGTVALKDCRD---PSNSGKEWKFDGEVEK-V----AWDP--- 339 (463)
T ss_pred -----------------EEecC----CCceEEEeccccceEEeeeccC---ccccCceEEeccceEE-E----EecC---
Confidence 55666 2267788888888888888884 3457778875421111 0 1122
Q ss_pred eeecCCCeEEeecCCCeEEEEEcccc-ceeeeeecccCceEEEEEecCCCCceEEEecCCCCCCccccCCCCCCCCcEEE
Q 000725 1209 AIGASSGLGIIGTNDGLVYAWELSSG-NKLGILHHFKGGTVSCIATDDSGLQALAVAGDGPDGGRRQRDPRHGQNDHVRI 1287 (1329)
Q Consensus 1209 afs~SG~~gfaGT~DGlVYmWDLstG-~kL~tL~~Heg~rVSCVA~dps~p~~~AsA~d~~d~~~r~~~~~~s~D~~VRi 1287 (1329)
.+-.++|+||+||+||=.|+-.- +.+=++++|.+ .||+|.+....|.-+++| |.|+.|++
T Consensus 340 ---~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~-~ISgl~~n~~~p~~l~t~---------------s~d~~Vkl 400 (463)
T KOG0270|consen 340 ---HSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDD-EISGLSVNIQTPGLLSTA---------------STDKVVKL 400 (463)
T ss_pred ---CCceeEEEecCCceEEeeecCCCCCceeEEEeccC-CcceEEecCCCCcceeec---------------cccceEEE
Confidence 35568999999999999999764 99999999999 799999998889877777 77888888
Q ss_pred eeeCCCc
Q 000725 1288 WKMDPNL 1294 (1329)
Q Consensus 1288 W~~~~~~ 1294 (1329)
|+.+-.-
T Consensus 401 w~~~~~~ 407 (463)
T KOG0270|consen 401 WKFDVDS 407 (463)
T ss_pred EeecCCC
Confidence 8876543
No 127
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.29 E-value=2e-11 Score=134.81 Aligned_cols=183 Identities=14% Similarity=0.192 Sum_probs=147.1
Q ss_pred ecCCCCCeeEecCCCccEEEEEcc------------------ccceeeeeccCccceeE--ecccc----ccccccCcce
Q 000725 1067 RIPKCAPLVVGHNGFGEFGIWDIS------------------KRVLVSRFSAARASIYQ--FFPIN----LFSWQRNGSV 1122 (1329)
Q Consensus 1067 rFpkss~lIVTgSGDgtf~LWDIs------------------kg~llqsF~ahs~sV~s--fsP~~----s~S~d~~v~t 1122 (1329)
+|+.++++|+|||.|-.|+|.|++ .+-.|.+|..|.+.|.. |-|.+ ++|-|++|+.
T Consensus 119 afs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKl 198 (430)
T KOG0640|consen 119 AFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKL 198 (430)
T ss_pred eeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEeccCCCeEEE
Confidence 999999999999999999999998 12358999999999998 99998 8999999999
Q ss_pred EECcchhhhc----cccccccccCCCceeecCCCCccceEEEEeeccCccchhhcccc-------cccCCCCcceeEEEe
Q 000725 1123 SMDASLELTN----TATTSLFSKHSEKSSFCPSVGEDSAIWLLVSTISDSDAQHNCMS-------RDCQKNPVRFWRLAL 1191 (1329)
Q Consensus 1123 fd~~s~d~~l----eatv~~fSgdvn~VsF~P~sGeD~AiwLLVST~Sdd~t~~Dlra-------~~~~gH~n~~wRLAL 1191 (1329)
||++.---++ .+...+|.. ++|+| + |-+|||+|.-...++||+.. +--++|..+.-+
T Consensus 199 FDfsK~saKrA~K~~qd~~~vrs----iSfHP-s----GefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~--- 266 (430)
T KOG0640|consen 199 FDFSKTSAKRAFKVFQDTEPVRS----ISFHP-S----GEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQ--- 266 (430)
T ss_pred EecccHHHHHHHHHhhccceeee----EeecC-C----CceEEEecCCCceeEEeccceeEeeecCcccccccceeE---
Confidence 9998766552 455677777 99999 3 56899999999999999983 333566666666
Q ss_pred eeccceecCCCCCCCceeeecCCCeEEeecCCCeEEEEEccccceeeee-ecccCceEEEEEecCCCCceEEEecCCCCC
Q 000725 1192 LVKNRVILGSPLDPRASAIGASSGLGIIGTNDGLVYAWELSSGNKLGIL-HHFKGGTVSCIATDDSGLQALAVAGDGPDG 1270 (1329)
Q Consensus 1192 l~K~siI~Gs~ldpra~afs~SG~~gfaGT~DGlVYmWDLstG~kL~tL-~~Heg~rVSCVA~dps~p~~~AsA~d~~d~ 1270 (1329)
+-.+.+|++-+.|+.||.|++||=.+++++.++ .+|.| .-.|-|+= ++++-....+
T Consensus 267 ----------------V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~g-sevcSa~F-tkn~kyiLsS----- 323 (430)
T KOG0640|consen 267 ----------------VRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGG-SEVCSAVF-TKNGKYILSS----- 323 (430)
T ss_pred ----------------EEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCC-ceeeeEEE-ccCCeEEeec-----
Confidence 557899999999999999999999999999999 57888 45566666 4544355442
Q ss_pred CccccCCCCCCCCcEEEeeeCCC
Q 000725 1271 GRRQRDPRHGQNDHVRIWKMDPN 1293 (1329)
Q Consensus 1271 ~~r~~~~~~s~D~~VRiW~~~~~ 1293 (1329)
|-|-+|++|..-.+
T Consensus 324 ---------G~DS~vkLWEi~t~ 337 (430)
T KOG0640|consen 324 ---------GKDSTVKLWEISTG 337 (430)
T ss_pred ---------CCcceeeeeeecCC
Confidence 55556666655443
No 128
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.28 E-value=5.7e-10 Score=118.99 Aligned_cols=268 Identities=13% Similarity=0.108 Sum_probs=162.9
Q ss_pred ccceEEEEEEeeeCCCCCCCCceeecccccccccccccccccccccceeeecCCCcEEEEecCccCccccCCCccccccc
Q 000725 902 DKKRTLFIYTVDIQEPRVGNPSCVGHTSVMLPFLKDNFGREIALERSCALFTPDGQYLVLLDSMKTPYCREGRSDCLCST 981 (1329)
Q Consensus 902 ~~~r~Lf~Yki~i~~~~~~~p~~vg~t~~llp~~~~~~~~~~~~ersglqFTPDGQ~LvLlgsik~p~CR~~~~dC~Cs~ 981 (1329)
.....+++|.+. . .|.+.++.+.+. ++ .-..++|+|||++|..
T Consensus 9 ~~~~~I~~~~~~--~--~g~l~~~~~~~~---------~~----~~~~l~~spd~~~lyv-------------------- 51 (330)
T PRK11028 9 PESQQIHVWNLN--H--EGALTLLQVVDV---------PG----QVQPMVISPDKRHLYV-------------------- 51 (330)
T ss_pred CCCCCEEEEEEC--C--CCceeeeeEEec---------CC----CCccEEECCCCCEEEE--------------------
Confidence 456778888883 1 145454433211 01 2347899999999861
Q ss_pred cccccCCCCcEEEEEec-CcceeeeEEEecccceeEEEEe-cCCeEEEec-CCCeEEEEeccCcc-eEEEeeeeecCCCC
Q 000725 982 CTSHRLDENAVKIVKVK-PGYVSVVAKLKTDDCVQCILVC-EPKHLIAVG-ESGKLHLWEMNSSW-SAQVEECIIPINDC 1057 (1329)
Q Consensus 982 C~~s~seDNtVKIv~V~-~G~vsll~kL~~h~sV~cIlVc-DpnhLVSaS-dDGkL~IWDM~SgW-sm~tee~Vi~~n~~ 1057 (1329)
.+..++.|.+|++. .|.+.++.+...-+....|.+. |.++|++++ .+++|.+||+++.= ...... .++ +
T Consensus 52 ---~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~-~~~---~ 124 (330)
T PRK11028 52 ---GVRPEFRVLSYRIADDGALTFAAESPLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQ-IIE---G 124 (330)
T ss_pred ---EECCCCcEEEEEECCCCceEEeeeecCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCcee-ecc---C
Confidence 12346889999997 5665556555433566778888 888888776 48999999997421 111111 011 1
Q ss_pred cccceeEEEecCCCCCee-EecCCCccEEEEEccc-ccee------eeeccCccce-eEecccc-----ccccccCcceE
Q 000725 1058 IYPCIVEMKRIPKCAPLV-VGHNGFGEFGIWDISK-RVLV------SRFSAARASI-YQFFPIN-----LFSWQRNGSVS 1123 (1329)
Q Consensus 1058 v~p~I~elKrFpkss~lI-VTgSGDgtf~LWDIsk-g~ll------qsF~ahs~sV-~sfsP~~-----s~S~d~~v~tf 1123 (1329)
.+....+ .|.+++..+ +++.+++++++||+.+ |.+. ..+....... ..|.|++ ....++.|.+|
T Consensus 125 -~~~~~~~-~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~ 202 (330)
T PRK11028 125 -LEGCHSA-NIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVW 202 (330)
T ss_pred -CCcccEe-EeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEE
Confidence 1223445 566666655 7888999999999987 3332 1222222222 2389997 33347888999
Q ss_pred ECcch--hhhccccccc----ccc--CCCceeecCCCCccceEEEEeec-cCccchhhcccccccCCCCcceeEEEeeec
Q 000725 1124 MDASL--ELTNTATTSL----FSK--HSEKSSFCPSVGEDSAIWLLVST-ISDSDAQHNCMSRDCQKNPVRFWRLALLVK 1194 (1329)
Q Consensus 1124 d~~s~--d~~leatv~~----fSg--dvn~VsF~P~sGeD~AiwLLVST-~Sdd~t~~Dlra~~~~gH~n~~wRLALl~K 1194 (1329)
++... .....++... +.+ ....+.|+| | +.+|+|+. .++.++.||+..+. ..+. +.
T Consensus 203 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~p----d-g~~lyv~~~~~~~I~v~~i~~~~------~~~~--~~-- 267 (330)
T PRK11028 203 QLKDPHGEIECVQTLDMMPADFSDTRWAADIHITP----D-GRHLYACDRTASLISVFSVSEDG------SVLS--FE-- 267 (330)
T ss_pred EEeCCCCCEEEEEEEecCCCcCCCCccceeEEECC----C-CCEEEEecCCCCeEEEEEEeCCC------CeEE--Ee--
Confidence 98632 2221111111 111 111377999 7 88999984 46777778886442 1111 11
Q ss_pred cceecCCCCCCCceeeecCCCeEEeecC-CCeEEEEEcc
Q 000725 1195 NRVILGSPLDPRASAIGASSGLGIIGTN-DGLVYAWELS 1232 (1329)
Q Consensus 1195 ~siI~Gs~ldpra~afs~SG~~gfaGT~-DGlVYmWDLs 1232 (1329)
..+-.| -.||..+++++|++++++.. ++.|-+|++.
T Consensus 268 ~~~~~~--~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 268 GHQPTE--TQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred EEEecc--ccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 122234 37899999999999997765 9999999874
No 129
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.28 E-value=5.3e-11 Score=129.34 Aligned_cols=225 Identities=14% Similarity=0.155 Sum_probs=162.6
Q ss_pred EEEecc-cceeEEEEe-cCCeEEEecCCCeEEEEeccCcceEEEeeeeecCCCCcccceeEEEecCCCCCeeEecCCCcc
Q 000725 1006 AKLKTD-DCVQCILVC-EPKHLIAVGESGKLHLWEMNSSWSAQVEECIIPINDCIYPCIVEMKRIPKCAPLVVGHNGFGE 1083 (1329)
Q Consensus 1006 ~kL~~h-~sV~cIlVc-DpnhLVSaSdDGkL~IWDM~SgWsm~tee~Vi~~n~~v~p~I~elKrFpkss~lIVTgSGDgt 1083 (1329)
.++.+| ..|++|++. |+++|++++-|+++.||.+.-. ....+ .-+.+|+.++-.|---|+.+.++++.++|.+
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~-r~~~~----~~~~gh~~svdql~w~~~~~d~~atas~dk~ 88 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERD-RFRKE----LVYRGHTDSVDQLCWDPKHPDLFATASGDKT 88 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecch-hhhhh----hcccCCCcchhhheeCCCCCcceEEecCCce
Confidence 456778 899999998 9999999999999999998887 22222 3466788888887678999999999999999
Q ss_pred EEEEEccccceeeeeccCccceeE-ecccc----ccccccCcceEECcchhhhccccccccccCCCceeecCCCCccceE
Q 000725 1084 FGIWDISKRVLVSRFSAARASIYQ-FFPIN----LFSWQRNGSVSMDASLELTNTATTSLFSKHSEKSSFCPSVGEDSAI 1158 (1329)
Q Consensus 1084 f~LWDIskg~llqsF~ahs~sV~s-fsP~~----s~S~d~~v~tfd~~s~d~~leatv~~fSgdvn~VsF~P~sGeD~Ai 1158 (1329)
+++||+.++++++..+.-..-++- .+|++ .+.=|..+.+++.+.-... ..-.+.+ -+|.+++.. + .| +
T Consensus 89 ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~-~~~~~~~--e~ne~~w~~-~-nd--~ 161 (313)
T KOG1407|consen 89 IRIWDIRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIV-NEEQFKF--EVNEISWNN-S-ND--L 161 (313)
T ss_pred EEEEEeccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEeccccee-ehhcccc--eeeeeeecC-C-CC--E
Confidence 999999999999999988888777 99998 3444555555555543333 1112222 233344443 1 12 3
Q ss_pred EEEeeccCccchhhccc----ccccCCCCcceeEEEeeeccceecCCCCCCCceeeecCCCeEEeecCCCeEEEEEcccc
Q 000725 1159 WLLVSTISDSDAQHNCM----SRDCQKNPVRFWRLALLVKNRVILGSPLDPRASAIGASSGLGIIGTNDGLVYAWELSSG 1234 (1329)
Q Consensus 1159 wLLVST~Sdd~t~~Dlr----a~~~~gH~n~~wRLALl~K~siI~Gs~ldpra~afs~SG~~gfaGT~DGlVYmWDLstG 1234 (1329)
++|.. +....-..-+- .+.-+-|+....+ ..|+|.|+|++.|+-|-+|-+||+..=
T Consensus 162 Fflt~-GlG~v~ILsypsLkpv~si~AH~snCic-------------------I~f~p~GryfA~GsADAlvSLWD~~EL 221 (313)
T KOG1407|consen 162 FFLTN-GLGCVEILSYPSLKPVQSIKAHPSNCIC-------------------IEFDPDGRYFATGSADALVSLWDVDEL 221 (313)
T ss_pred EEEec-CCceEEEEeccccccccccccCCcceEE-------------------EEECCCCceEeeccccceeeccChhHh
Confidence 33322 22222221111 3445567888887 568999999999999999999999998
Q ss_pred ceeeeeecccCceEEEEEecCCCCceEEEe
Q 000725 1235 NKLGILHHFKGGTVSCIATDDSGLQALAVA 1264 (1329)
Q Consensus 1235 ~kL~tL~~Heg~rVSCVA~dps~p~~~AsA 1264 (1329)
-++-++..|+= -|-.|.++=++-- +|+|
T Consensus 222 iC~R~isRldw-pVRTlSFS~dg~~-lASa 249 (313)
T KOG1407|consen 222 ICERCISRLDW-PVRTLSFSHDGRM-LASA 249 (313)
T ss_pred hhheeeccccC-ceEEEEeccCcce-eecc
Confidence 88888888887 6888888833333 6777
No 130
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.28 E-value=4.5e-10 Score=134.47 Aligned_cols=269 Identities=15% Similarity=0.205 Sum_probs=180.0
Q ss_pred ccCCCCcEEEEEecCcceeeeEEEecc-cceeEEEEe-cCCeEEEecCCCeEEEEeccCcceEEEeeeeecCCCCcccce
Q 000725 985 HRLDENAVKIVKVKPGYVSVVAKLKTD-DCVQCILVC-EPKHLIAVGESGKLHLWEMNSSWSAQVEECIIPINDCIYPCI 1062 (1329)
Q Consensus 985 s~seDNtVKIv~V~~G~vsll~kL~~h-~sV~cIlVc-DpnhLVSaSdDGkL~IWDM~SgWsm~tee~Vi~~n~~v~p~I 1062 (1329)
.+++++.++||+|.+|. ++.+|.++ ..|-+|-=+ -=..++-+=.+|+|||..|..+-.+.++. .| -.-|
T Consensus 177 vGs~~G~lql~Nvrt~K--~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk---~d----~g~V 247 (910)
T KOG1539|consen 177 VGSSQGRLQLWNVRTGK--VVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFK---QD----WGRV 247 (910)
T ss_pred EeecCCcEEEEEeccCc--EEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEE---cc----ccce
Confidence 68999999999999999 99999999 555444433 22345556689999999999999999888 11 2346
Q ss_pred eEEEecCCCCC-eeEecCCCccEEEEEccccceeeeec-cCccceeE--ecccc----ccccccCcceEECc--chhhh-
Q 000725 1063 VEMKRIPKCAP-LVVGHNGFGEFGIWDISKRVLVSRFS-AARASIYQ--FFPIN----LFSWQRNGSVSMDA--SLELT- 1131 (1329)
Q Consensus 1063 ~elKrFpkss~-lIVTgSGDgtf~LWDIskg~llqsF~-ahs~sV~s--fsP~~----s~S~d~~v~tfd~~--s~d~~- 1131 (1329)
-++ .|--+++ ++++|+-.|.+.+||++++.++.... +|.+.|.+ |.|-. +-+-|...++|... +|.-+
T Consensus 248 tsl-SFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~ 326 (910)
T KOG1539|consen 248 TSL-SFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRL 326 (910)
T ss_pred eEE-EeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchh
Confidence 666 7776665 55666677999999999999965554 99777777 77766 44556655655544 44434
Q ss_pred ---ccccccccccCCCceeecCCCCccceEEEEeeccCccchhhccc-------ccc-----------------------
Q 000725 1132 ---NTATTSLFSKHSEKSSFCPSVGEDSAIWLLVSTISDSDAQHNCM-------SRD----------------------- 1178 (1329)
Q Consensus 1132 ---leatv~~fSgdvn~VsF~P~sGeD~AiwLLVST~Sdd~t~~Dlr-------a~~----------------------- 1178 (1329)
|++|-.|-+. ++|+= .. +..||....+-+-+.|++. +.+
T Consensus 327 LR~R~GHs~Pp~~----irfy~---~~-g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i 398 (910)
T KOG1539|consen 327 LRSRGGHSAPPSC----IRFYG---SQ-GHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPI 398 (910)
T ss_pred eeeccCCCCCchh----eeeec---cC-cEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcc
Confidence 4677777766 55552 12 4444433333322222222 000
Q ss_pred ----------------cCCCC----cceeEEEeeeccceecCCCCCC----------CceeeecCCCeEEeecCCCeEEE
Q 000725 1179 ----------------CQKNP----VRFWRLALLVKNRVILGSPLDP----------RASAIGASSGLGIIGTNDGLVYA 1228 (1329)
Q Consensus 1179 ----------------~~gH~----n~~wRLALl~K~siI~Gs~ldp----------ra~afs~SG~~gfaGT~DGlVYm 1228 (1329)
...|. ..-|++. +.-+=-..||| +|+|++.+|+.+|+||..|.|-.
T Consensus 399 ~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~----n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~ 474 (910)
T KOG1539|consen 399 VEFAFENAREKEWDNVITAHKGKRSAYTWNFR----NKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDR 474 (910)
T ss_pred eeeecccchhhhhcceeEEecCcceEEEEecc----CcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEE
Confidence 00111 1123211 11111112444 48999999999999999999999
Q ss_pred EEccccceeeee---ecccCceEEEEEecCCCCceEEEecCCCCCCccccCCCCCCCCcEEEeeeCC
Q 000725 1229 WELSSGNKLGIL---HHFKGGTVSCIATDDSGLQALAVAGDGPDGGRRQRDPRHGQNDHVRIWKMDP 1292 (1329)
Q Consensus 1229 WDLstG~kL~tL---~~Heg~rVSCVA~dps~p~~~AsA~d~~d~~~r~~~~~~s~D~~VRiW~~~~ 1292 (1329)
+.+++|-+.+++ ++|.+ .|+.||+|-..-. |.+| +.+|.++.|+...
T Consensus 475 fNmQSGi~r~sf~~~~ah~~-~V~gla~D~~n~~-~vsa---------------~~~Gilkfw~f~~ 524 (910)
T KOG1539|consen 475 FNMQSGIHRKSFGDSPAHKG-EVTGLAVDGTNRL-LVSA---------------GADGILKFWDFKK 524 (910)
T ss_pred EEcccCeeecccccCccccC-ceeEEEecCCCce-EEEc---------------cCcceEEEEecCC
Confidence 999999999999 79999 8999999944443 7777 5666666666543
No 131
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.27 E-value=1.1e-10 Score=128.59 Aligned_cols=252 Identities=17% Similarity=0.180 Sum_probs=176.1
Q ss_pred ccceeEEEEe--cCCeEEEecCCCeEEEEeccC-cceEEEeeeeecCCCCcccceeEEEecCCCCCeeEecCCCccEEEE
Q 000725 1011 DDCVQCILVC--EPKHLIAVGESGKLHLWEMNS-SWSAQVEECIIPINDCIYPCIVEMKRIPKCAPLVVGHNGFGEFGIW 1087 (1329)
Q Consensus 1011 h~sV~cIlVc--DpnhLVSaSdDGkL~IWDM~S-gWsm~tee~Vi~~n~~v~p~I~elKrFpkss~lIVTgSGDgtf~LW 1087 (1329)
-|+|++|.++ ..+-++++|=||+|++|+++. |-.+.++- ..|...++++ ++.++++.|.+|+.|+..+||
T Consensus 27 ~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~------~~~~~PvL~v-~WsddgskVf~g~~Dk~~k~w 99 (347)
T KOG0647|consen 27 EDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQ------QSHDGPVLDV-CWSDDGSKVFSGGCDKQAKLW 99 (347)
T ss_pred ccchheeEeccccCceEEecccCCceEEEEEecCCcccchhh------hccCCCeEEE-EEccCCceEEeeccCCceEEE
Confidence 4899999999 677777999999999999876 34444333 2378889999 999999999999999999999
Q ss_pred EccccceeeeeccCccceeE--ecccc------ccccccCcceEECcchhhhccccccccccCCCceeecCCCCccceEE
Q 000725 1088 DISKRVLVSRFSAARASIYQ--FFPIN------LFSWQRNGSVSMDASLELTNTATTSLFSKHSEKSSFCPSVGEDSAIW 1159 (1329)
Q Consensus 1088 DIskg~llqsF~ahs~sV~s--fsP~~------s~S~d~~v~tfd~~s~d~~leatv~~fSgdvn~VsF~P~sGeD~Aiw 1159 (1329)
||+++| ++.+.+|.+.|-+ +.+-. ++|||.+++-||.++-.... +.+-=++ | |..-.-.+ -
T Consensus 100 DL~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~--t~~LPeR----v-Ya~Dv~~p---m 168 (347)
T KOG0647|consen 100 DLASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVA--TLQLPER----V-YAADVLYP---M 168 (347)
T ss_pred EccCCC-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeee--eeeccce----e-eehhccCc---e
Confidence 999995 5678999999988 44333 79999999999999766551 0111111 1 22200111 2
Q ss_pred EEeeccCccchhhccc--ccccCCCCc-ceeEEEeeeccceecCCCCCCCceeeecCCCeEEeecCCCeEEEEEcccc--
Q 000725 1160 LLVSTISDSDAQHNCM--SRDCQKNPV-RFWRLALLVKNRVILGSPLDPRASAIGASSGLGIIGTNDGLVYAWELSSG-- 1234 (1329)
Q Consensus 1160 LLVST~Sdd~t~~Dlr--a~~~~gH~n-~~wRLALl~K~siI~Gs~ldpra~afs~SG~~gfaGT~DGlVYmWDLstG-- 1234 (1329)
+.|+|+...+..|+|+ -.+|.-|.. --|+. |++++-......+.|+..|.|-+--+-.+
T Consensus 169 ~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~----------------R~va~f~d~~~~alGsiEGrv~iq~id~~~~ 232 (347)
T KOG0647|consen 169 AVVATAERHIAVYNLENPPTEFKRIESPLKWQT----------------RCVACFQDKDGFALGSIEGRVAIQYIDDPNP 232 (347)
T ss_pred eEEEecCCcEEEEEcCCCcchhhhhcCccccee----------------eEEEEEecCCceEeeeecceEEEEecCCCCc
Confidence 3577888888888886 222211111 11222 45666666666699999999999999988
Q ss_pred ceeeeeecccCc--------eEEEEEecCCCCceEEEecCCCCCCccccCCCCCCCCcEEEeee----CCCcceeecCCC
Q 000725 1235 NKLGILHHFKGG--------TVSCIATDDSGLQALAVAGDGPDGGRRQRDPRHGQNDHVRIWKM----DPNLGCVRNSNG 1302 (1329)
Q Consensus 1235 ~kL~tL~~Heg~--------rVSCVA~dps~p~~~AsA~d~~d~~~r~~~~~~s~D~~VRiW~~----~~~~~~~~~~~~ 1302 (1329)
+.-=++.||... .|-.|++|| ..+-+|.| +.|||.-.||- |..-|+-.+ .|---|--|.||
T Consensus 233 ~~nFtFkCHR~~~~~~~~VYaVNsi~FhP-~hgtlvTa--GsDGtf~FWDk----dar~kLk~s~~~~qpItcc~fn~~G 305 (347)
T KOG0647|consen 233 KDNFTFKCHRSTNSVNDDVYAVNSIAFHP-VHGTLVTA--GSDGTFSFWDK----DARTKLKTSETHPQPITCCSFNRNG 305 (347)
T ss_pred cCceeEEEeccCCCCCCceEEecceEeec-ccceEEEe--cCCceEEEecc----hhhhhhhccCcCCCccceeEecCCC
Confidence 778889999841 377899998 66658888 35777777765 333333331 223345667666
Q ss_pred C
Q 000725 1303 D 1303 (1329)
Q Consensus 1303 ~ 1303 (1329)
.
T Consensus 306 ~ 306 (347)
T KOG0647|consen 306 S 306 (347)
T ss_pred C
Confidence 4
No 132
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.27 E-value=2e-10 Score=134.08 Aligned_cols=269 Identities=18% Similarity=0.204 Sum_probs=194.1
Q ss_pred cceeeecCCCcEEEEecCccCccccCCCccccccccccccCCCCcEEEEEecCcceeeeEEEecccceeEEEEe--cCCe
Q 000725 947 RSCALFTPDGQYLVLLDSMKTPYCREGRSDCLCSTCTSHRLDENAVKIVKVKPGYVSVVAKLKTDDCVQCILVC--EPKH 1024 (1329)
Q Consensus 947 rsglqFTPDGQ~LvLlgsik~p~CR~~~~dC~Cs~C~~s~seDNtVKIv~V~~G~vsll~kL~~h~sV~cIlVc--Dpnh 1024 (1329)
+-+|--.|-|++|+ +||+|++||||-|.||. .+.+..-...|+||.|+ -..-
T Consensus 403 Vr~iSvdp~G~wla------------------------sGsdDGtvriWEi~TgR--cvr~~~~d~~I~~vaw~P~~~~~ 456 (733)
T KOG0650|consen 403 VRSISVDPSGEWLA------------------------SGSDDGTVRIWEIATGR--CVRTVQFDSEIRSVAWNPLSDLC 456 (733)
T ss_pred EEEEEecCCcceee------------------------ecCCCCcEEEEEeecce--EEEEEeecceeEEEEecCCCCce
Confidence 44667788999999 99999999999999999 99999999999999999 4445
Q ss_pred EEEecCCCeEEEEeccC---------------------------cceEEEee-------eeecCCCCcccceeEEEecCC
Q 000725 1025 LIAVGESGKLHLWEMNS---------------------------SWSAQVEE-------CIIPINDCIYPCIVEMKRIPK 1070 (1329)
Q Consensus 1025 LVSaSdDGkL~IWDM~S---------------------------gWsm~tee-------~Vi~~n~~v~p~I~elKrFpk 1070 (1329)
|+++.-++++.|=+-.= .|+-..+. .+| +|...|-.| ....
T Consensus 457 vLAvA~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I----~~~k~i~~v-tWHr 531 (733)
T KOG0650|consen 457 VLAVAVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVI----KHPKSIRQV-TWHR 531 (733)
T ss_pred eEEEEecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEE----ecCCcccee-eeec
Confidence 56666677766655111 23322111 011 123333334 5555
Q ss_pred CCCeeEecCC---CccEEEEEccccceeeeeccCccceeE--ecccc---ccccccCcceEECcchhhh--ccccccccc
Q 000725 1071 CAPLVVGHNG---FGEFGIWDISKRVLVSRFSAARASIYQ--FFPIN---LFSWQRNGSVSMDASLELT--NTATTSLFS 1140 (1329)
Q Consensus 1071 ss~lIVTgSG---Dgtf~LWDIskg~llqsF~ahs~sV~s--fsP~~---s~S~d~~v~tfd~~s~d~~--leatv~~fS 1140 (1329)
.+.++++-.+ -..+-|-+++|+.-..-|.--.+.|+. |-|.. .-+-|..|++|++...++. |..-.-|+|
T Consensus 532 kGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~kwiS 611 (733)
T KOG0650|consen 532 KGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGSKWIS 611 (733)
T ss_pred CCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCCeeee
Confidence 6666666444 467889999999999999777777777 77776 5567999999999999888 544455677
Q ss_pred cCCCceeecCCCCccceEEEEeeccCccchhhcccccc--cCCCCcceeEEEeeeccceecCCCCCCCceeeecCCCeEE
Q 000725 1141 KHSEKSSFCPSVGEDSAIWLLVSTISDSDAQHNCMSRD--CQKNPVRFWRLALLVKNRVILGSPLDPRASAIGASSGLGI 1218 (1329)
Q Consensus 1141 gdvn~VsF~P~sGeD~AiwLLVST~Sdd~t~~Dlra~~--~~gH~n~~wRLALl~K~siI~Gs~ldpra~afs~SG~~gf 1218 (1329)
+ .+.+| .||. |++|+.+.-..-||+-+.. |+. -+..+=|+ |.++|-..=.++.
T Consensus 612 ~----msihp-~GDn----li~gs~d~k~~WfDldlsskPyk~--lr~H~~av--------------r~Va~H~ryPLfa 666 (733)
T KOG0650|consen 612 S----MSIHP-NGDN----LILGSYDKKMCWFDLDLSSKPYKT--LRLHEKAV--------------RSVAFHKRYPLFA 666 (733)
T ss_pred e----eeecC-CCCe----EEEecCCCeeEEEEcccCcchhHH--hhhhhhhh--------------hhhhhccccceee
Confidence 7 99998 7776 6677776666668887442 110 11112222 7799999999999
Q ss_pred eecCCCeEEEE------Eccccceee---eeecccCce----EEEEEecCCCCceEEEecCCCCCCccccCCCCCCCCcE
Q 000725 1219 IGTNDGLVYAW------ELSSGNKLG---ILHHFKGGT----VSCIATDDSGLQALAVAGDGPDGGRRQRDPRHGQNDHV 1285 (1329)
Q Consensus 1219 aGT~DGlVYmW------DLstG~kL~---tL~~Heg~r----VSCVA~dps~p~~~AsA~d~~d~~~r~~~~~~s~D~~V 1285 (1329)
+||.||+|++. ||++.--+- .|.+|.- + |-.+-.||.+|= +-+| +.|++|
T Consensus 667 s~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~-~~~~gVLd~~wHP~qpW-LfsA---------------GAd~ti 729 (733)
T KOG0650|consen 667 SGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEK-TNDLGVLDTIWHPRQPW-LFSA---------------GADGTI 729 (733)
T ss_pred eecCCCcEEEEeeeeehhhhcCCceEeeeeccCcee-ecccceEeecccCCCce-EEec---------------CCCceE
Confidence 99999999997 777766554 4568877 5 777889999998 6677 667777
Q ss_pred EEe
Q 000725 1286 RIW 1288 (1329)
Q Consensus 1286 RiW 1288 (1329)
|+|
T Consensus 730 rlf 732 (733)
T KOG0650|consen 730 RLF 732 (733)
T ss_pred Eee
Confidence 777
No 133
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.27 E-value=1.8e-10 Score=136.01 Aligned_cols=314 Identities=11% Similarity=0.099 Sum_probs=201.8
Q ss_pred cceEEEEEEeeeCCCCCCCCceeecccccccccccccccccccccceeeecCCCcEEEEecCccCccccCCCcccccccc
Q 000725 903 KKRTLFIYTVDIQEPRVGNPSCVGHTSVMLPFLKDNFGREIALERSCALFTPDGQYLVLLDSMKTPYCREGRSDCLCSTC 982 (1329)
Q Consensus 903 ~~r~Lf~Yki~i~~~~~~~p~~vg~t~~llp~~~~~~~~~~~~ersglqFTPDGQ~LvLlgsik~p~CR~~~~dC~Cs~C 982 (1329)
.++.|||+.|.=-.-..-+-+++-|+.-+|.--...+ ..++. ..-|+=--|
T Consensus 344 ndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~----nv~~~-------------------------~~aclp~~c 394 (1080)
T KOG1408|consen 344 NDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPC----NVHSP-------------------------TAACLPRGC 394 (1080)
T ss_pred cCceEEEEeccccccccceeeeeeccceeeeeccccc----cccCc-------------------------ccccCCccc
Confidence 5789999988654444456666777666654322111 01221 223444456
Q ss_pred ccccCCCCcEEEEEecCcce------------------------------------eeeEEEecccceeEEEEe-cCCeE
Q 000725 983 TSHRLDENAVKIVKVKPGYV------------------------------------SVVAKLKTDDCVQCILVC-EPKHL 1025 (1329)
Q Consensus 983 ~~s~seDNtVKIv~V~~G~v------------------------------------sll~kL~~h~sV~cIlVc-DpnhL 1025 (1329)
--.||.|+|||+|+.+.|.- ....++.+--+++||.|+ |..||
T Consensus 395 F~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhL 474 (1080)
T KOG1408|consen 395 FTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHL 474 (1080)
T ss_pred eeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCccee
Confidence 66899999999999876321 111223334679999999 99999
Q ss_pred EEecCCCeEEEEeccCcceEEEeeeeecCCCCcccceeEEEecCCC---CCeeEecCCCccEEEEEccccce-eeeeccC
Q 000725 1026 IAVGESGKLHLWEMNSSWSAQVEECIIPINDCIYPCIVEMKRIPKC---APLVVGHNGFGEFGIWDISKRVL-VSRFSAA 1101 (1329)
Q Consensus 1026 VSaSdDGkL~IWDM~SgWsm~tee~Vi~~n~~v~p~I~elKrFpks---s~lIVTgSGDgtf~LWDIskg~l-lqsF~ah 1101 (1329)
+|+---|+|+|+|+..---+-+-| -|-..|++| .|.+- -.|++++|-|--|-++|+..-=. +|+..+|
T Consensus 475 AsGDr~GnlrVy~Lq~l~~~~~~e-------AHesEilcL-eyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~H 546 (1080)
T KOG1408|consen 475 ASGDRGGNLRVYDLQELEYTCFME-------AHESEILCL-EYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGH 546 (1080)
T ss_pred cccCccCceEEEEehhhhhhhhee-------cccceeEEE-eecCchhhhHhhhhccCCceEEEEecccccchhhhhccc
Confidence 999999999999988755555545 578888888 43331 15889999999999999976543 9999999
Q ss_pred ccceeE--ecccc------ccccccCcceEECcc----hhhhccccccccccCCCceeecCCCCccceEEEEeeccCccc
Q 000725 1102 RASIYQ--FFPIN------LFSWQRNGSVSMDAS----LELTNTATTSLFSKHSEKSSFCPSVGEDSAIWLLVSTISDSD 1169 (1329)
Q Consensus 1102 s~sV~s--fsP~~------s~S~d~~v~tfd~~s----~d~~leatv~~fSgdvn~VsF~P~sGeD~AiwLLVST~Sdd~ 1169 (1329)
+.+|++ |.-.+ +|-.|..| .|.+.. +... -.+.+.++. - --|-+ ..|-.++.+++..-+--+
T Consensus 547 SssITsvKFa~~gln~~MiscGADksi-mFr~~qk~~~g~~f-~r~t~t~~k-t--TlYDm-~Vdp~~k~v~t~cQDrni 620 (1080)
T KOG1408|consen 547 SSSITSVKFACNGLNRKMISCGADKSI-MFRVNQKASSGRLF-PRHTQTLSK-T--TLYDM-AVDPTSKLVVTVCQDRNI 620 (1080)
T ss_pred ccceeEEEEeecCCceEEEeccCchhh-heehhccccCceec-ccccccccc-c--eEEEe-eeCCCcceEEEEecccce
Confidence 999999 66555 22222211 111111 1111 011111111 0 00111 122235566666666666
Q ss_pred hhhcccc----cccCCCCcceeEEEeeeccceecCCCCCCCceeeecCCCeEEeecCCCeEEEEEccccceeeeeecccC
Q 000725 1170 AQHNCMS----RDCQKNPVRFWRLALLVKNRVILGSPLDPRASAIGASSGLGIIGTNDGLVYAWELSSGNKLGILHHFKG 1245 (1329)
Q Consensus 1170 t~~Dlra----~~~~gH~n~~wRLALl~K~siI~Gs~ldpra~afs~SG~~gfaGT~DGlVYmWDLstG~kL~tL~~Heg 1245 (1329)
+.||+.. +.|.|-+.. .=||--+-+.|||-|+++...|+++-+.|+.+|.++.+..||..
T Consensus 621 rif~i~sgKq~k~FKgs~~~----------------eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE 684 (1080)
T KOG1408|consen 621 RIFDIESGKQVKSFKGSRDH----------------EGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSE 684 (1080)
T ss_pred EEEeccccceeeeecccccC----------------CCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcch
Confidence 6677762 222221111 11233467789999999999999999999999999999999999
Q ss_pred ceEEEEEecCCCCceEEEecCCCCCCccccCCCCCCCCcEEEeeeCC
Q 000725 1246 GTVSCIATDDSGLQALAVAGDGPDGGRRQRDPRHGQNDHVRIWKMDP 1292 (1329)
Q Consensus 1246 ~rVSCVA~dps~p~~~AsA~d~~d~~~r~~~~~~s~D~~VRiW~~~~ 1292 (1329)
-|+-+-+.++=-. +.++ |-|+-|-||+..-
T Consensus 685 -~VTG~kF~nDCkH-lISv---------------sgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 685 -AVTGVKFLNDCKH-LISV---------------SGDGCIFVWKLPL 714 (1080)
T ss_pred -heeeeeecccchh-heee---------------cCCceEEEEECch
Confidence 6999999965544 6677 5566677776543
No 134
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.26 E-value=1.1e-11 Score=138.64 Aligned_cols=232 Identities=15% Similarity=0.192 Sum_probs=161.8
Q ss_pred eeEEEecc-cceeEEEEe--cCCeEEEecCCCeEEEEeccCcceEEEeeeeecCCCCcccceeEEEecCCCCCeeEecCC
Q 000725 1004 VVAKLKTD-DCVQCILVC--EPKHLIAVGESGKLHLWEMNSSWSAQVEECIIPINDCIYPCIVEMKRIPKCAPLVVGHNG 1080 (1329)
Q Consensus 1004 ll~kL~~h-~sV~cIlVc--DpnhLVSaSdDGkL~IWDM~SgWsm~tee~Vi~~n~~v~p~I~elKrFpkss~lIVTgSG 1080 (1329)
.+..|.|| ++|+|++=- -..-++|+|-||.|.||||..--+..++. ||...|-.+ .+-. .-++|++-
T Consensus 58 Fv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~-------AH~G~V~Gi-~v~~--~~~~tvgd 127 (433)
T KOG0268|consen 58 FVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFK-------AHEGLVRGI-CVTQ--TSFFTVGD 127 (433)
T ss_pred chhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheee-------cccCceeeE-Eecc--cceEEecC
Confidence 45678999 999998765 33568999999999999999988888888 888999998 7766 88999999
Q ss_pred CccEEEEEccccceeeeeccCccceeEeccccc------c-ccccCcceEECcchhhhccccccccccCC---CceeecC
Q 000725 1081 FGEFGIWDISKRVLVSRFSAARASIYQFFPINL------F-SWQRNGSVSMDASLELTNTATTSLFSKHS---EKSSFCP 1150 (1329)
Q Consensus 1081 Dgtf~LWDIskg~llqsF~ahs~sV~sfsP~~s------~-S~d~~v~tfd~~s~d~~leatv~~fSgdv---n~VsF~P 1150 (1329)
|.|++.|-++- -.+.+|.+- ++ +.++.. | +=-..|.+||.. +...++.++=.. -+++|.|
T Consensus 128 DKtvK~wk~~~-~p~~tilg~--s~--~~gIdh~~~~~~FaTcGe~i~IWD~~-----R~~Pv~smswG~Dti~svkfNp 197 (433)
T KOG0268|consen 128 DKTVKQWKIDG-PPLHTILGK--SV--YLGIDHHRKNSVFATCGEQIDIWDEQ-----RDNPVSSMSWGADSISSVKFNP 197 (433)
T ss_pred CcceeeeeccC-Ccceeeecc--cc--ccccccccccccccccCceeeecccc-----cCCccceeecCCCceeEEecCC
Confidence 99999999876 345555432 22 222220 0 011235555542 233333343333 3489999
Q ss_pred CCCccceEEEEeeccC-ccchhhcccccccCCCCcceeEEEeeeccceecCCCCCCCceeeecCCCeEEeecCCCeEEEE
Q 000725 1151 SVGEDSAIWLLVSTIS-DSDAQHNCMSRDCQKNPVRFWRLALLVKNRVILGSPLDPRASAIGASSGLGIIGTNDGLVYAW 1229 (1329)
Q Consensus 1151 ~sGeD~AiwLLVST~S-dd~t~~Dlra~~~~gH~n~~wRLALl~K~siI~Gs~ldpra~afs~SG~~gfaGT~DGlVYmW 1229 (1329)
. =.-||+|+++ -.+.+||+|-.. + | ..||++. -++..|+.|-+-.+++|.+|.++|++
T Consensus 198 -v----ETsILas~~sDrsIvLyD~R~~~----P-----l-----~KVi~~m--RTN~IswnPeafnF~~a~ED~nlY~~ 256 (433)
T KOG0268|consen 198 -V----ETSILASCASDRSIVLYDLRQAS----P-----L-----KKVILTM--RTNTICWNPEAFNFVAANEDHNLYTY 256 (433)
T ss_pred -C----cchheeeeccCCceEEEecccCC----c-----c-----ceeeeec--cccceecCccccceeeccccccceeh
Confidence 2 3347888854 466779999554 1 1 1345544 56889999988899999999999999
Q ss_pred Ecccc-ceeeeeecccCceEEEEEecCCCCceEEEecCCCCCCccccCCCCC
Q 000725 1230 ELSSG-NKLGILHHFKGGTVSCIATDDSGLQALAVAGDGPDGGRRQRDPRHG 1280 (1329)
Q Consensus 1230 DLstG-~kL~tL~~Heg~rVSCVA~dps~p~~~AsA~d~~d~~~r~~~~~~s 1280 (1329)
|.-.= +-++-..+|-+ .|..|+++|++.. +++| +-|.||||+--+++
T Consensus 257 DmR~l~~p~~v~~dhvs-AV~dVdfsptG~E-fvsg--syDksIRIf~~~~~ 304 (433)
T KOG0268|consen 257 DMRNLSRPLNVHKDHVS-AVMDVDFSPTGQE-FVSG--SYDKSIRIFPVNHG 304 (433)
T ss_pred hhhhhcccchhhcccce-eEEEeccCCCcch-hccc--cccceEEEeecCCC
Confidence 98653 33445578999 8999999999988 7777 34444444444333
No 135
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.24 E-value=3.7e-11 Score=129.69 Aligned_cols=196 Identities=15% Similarity=0.232 Sum_probs=141.7
Q ss_pred ecCCCCCeeEecCCCccEEEEEccccc---eeeeeccCccceeE---ecccc-----ccccccCcceEECcchhhhcccc
Q 000725 1067 RIPKCAPLVVGHNGFGEFGIWDISKRV---LVSRFSAARASIYQ---FFPIN-----LFSWQRNGSVSMDASLELTNTAT 1135 (1329)
Q Consensus 1067 rFpkss~lIVTgSGDgtf~LWDIskg~---llqsF~ahs~sV~s---fsP~~-----s~S~d~~v~tfd~~s~d~~leat 1135 (1329)
.+.=.+..|+|++.|++++|++++... ++.++.+|+++|++ .-|.. +|||||.|.+|-..++.=.-...
T Consensus 18 ~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e 97 (299)
T KOG1332|consen 18 QLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYE 97 (299)
T ss_pred hhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhh
Confidence 445568899999999999999999764 69999999999999 45554 99999999999999994441111
Q ss_pred ccccccCCCceeecCCCCccceEEEEeeccCccchhhcccccccCCCCcceeEEEeeeccceecCCCCCCCceeeecC--
Q 000725 1136 TSLFSKHSEKSSFCPSVGEDSAIWLLVSTISDSDAQHNCMSRDCQKNPVRFWRLALLVKNRVILGSPLDPRASAIGAS-- 1213 (1329)
Q Consensus 1136 v~~fSgdvn~VsF~P~sGeD~AiwLLVST~Sdd~t~~Dlra~~~~gH~n~~wRLALl~K~siI~Gs~ldpra~afs~S-- 1213 (1329)
-+..++-+|+|+|-| -+.+.-|+.++.+..+..++++.+- .|. -..|++.-.+-=++++-.|.
T Consensus 98 ~~~h~~SVNsV~wap---heygl~LacasSDG~vsvl~~~~~g-------~w~-----t~ki~~aH~~GvnsVswapa~~ 162 (299)
T KOG1332|consen 98 HAAHSASVNSVAWAP---HEYGLLLACASSDGKVSVLTYDSSG-------GWT-----TSKIVFAHEIGVNSVSWAPASA 162 (299)
T ss_pred hhhhcccceeecccc---cccceEEEEeeCCCcEEEEEEcCCC-------Ccc-----chhhhhccccccceeeecCcCC
Confidence 122233567799999 5778888888888888887777551 111 01122111111144554444
Q ss_pred -C-----------CeEEeecCCCeEEEEEccccc-ee-eeeecccCceEEEEEecCCC--C-ceEEEecCCCCCCccccC
Q 000725 1214 -S-----------GLGIIGTNDGLVYAWELSSGN-KL-GILHHFKGGTVSCIATDDSG--L-QALAVAGDGPDGGRRQRD 1276 (1329)
Q Consensus 1214 -G-----------~~gfaGT~DGlVYmWDLstG~-kL-~tL~~Heg~rVSCVA~dps~--p-~~~AsA~d~~d~~~r~~~ 1276 (1329)
| +.+++|.-|++|++|+...++ ++ .+|.+|.+ .|--||-.|+- + --||+|
T Consensus 163 ~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~d-wVRDVAwaP~~gl~~s~iAS~------------ 229 (299)
T KOG1332|consen 163 PGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKD-WVRDVAWAPSVGLPKSTIASC------------ 229 (299)
T ss_pred CccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcch-hhhhhhhccccCCCceeeEEe------------
Confidence 4 679999999999999999975 22 34999999 99999999876 1 127777
Q ss_pred CCCCCCCcEEEeeeCCC
Q 000725 1277 PRHGQNDHVRIWKMDPN 1293 (1329)
Q Consensus 1277 ~~~s~D~~VRiW~~~~~ 1293 (1329)
|+|++|-||..+..
T Consensus 230 ---SqDg~viIwt~~~e 243 (299)
T KOG1332|consen 230 ---SQDGTVIIWTKDEE 243 (299)
T ss_pred ---cCCCcEEEEEecCc
Confidence 78888888877643
No 136
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.22 E-value=6.3e-10 Score=126.55 Aligned_cols=200 Identities=14% Similarity=0.100 Sum_probs=125.6
Q ss_pred cceeEEEEe--cCCeEEEecCCCeEEEEeccCcceEEEee--eee-cCCCCcccceeEEEecCC-CCCeeEecCCCccEE
Q 000725 1012 DCVQCILVC--EPKHLIAVGESGKLHLWEMNSSWSAQVEE--CII-PINDCIYPCIVEMKRIPK-CAPLVVGHNGFGEFG 1085 (1329)
Q Consensus 1012 ~sV~cIlVc--DpnhLVSaSdDGkL~IWDM~SgWsm~tee--~Vi-~~n~~v~p~I~elKrFpk-ss~lIVTgSGDgtf~ 1085 (1329)
++|..+--- .|+.|++.+.++.+.|||+...=.++..- +-- +.-.+|-..-..| ..+. .--.+||++-|+++|
T Consensus 125 gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~gl-sWn~~~~g~Lls~~~d~~i~ 203 (422)
T KOG0264|consen 125 GEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGL-SWNRQQEGTLLSGSDDHTIC 203 (422)
T ss_pred ccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeeccccccc-ccccccceeEeeccCCCcEE
Confidence 666666544 88889999999999999987765555431 000 0001222211112 2222 124688999999999
Q ss_pred EEEccccce-------eeeeccCccceeE--ecccc-----ccccccCcceEECcchhhhccccccccccCCCceeecCC
Q 000725 1086 IWDISKRVL-------VSRFSAARASIYQ--FFPIN-----LFSWQRNGSVSMDASLELTNTATTSLFSKHSEKSSFCPS 1151 (1329)
Q Consensus 1086 LWDIskg~l-------lqsF~ahs~sV~s--fsP~~-----s~S~d~~v~tfd~~s~d~~leatv~~fSgdvn~VsF~P~ 1151 (1329)
+|||..... ...|++|++.|-- |-|.. +++-|+...+||+++...+.
T Consensus 204 lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~------------------- 264 (422)
T KOG0264|consen 204 LWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKP------------------- 264 (422)
T ss_pred EEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCC-------------------
Confidence 999987665 5678888887654 44443 23333333444443320001
Q ss_pred CCccceEEEEeeccCccchhhcccccccCCCCcceeEEEeeeccceecCCCCCCCceeeec-CCCeEEeecCCCeEEEEE
Q 000725 1152 VGEDSAIWLLVSTISDSDAQHNCMSRDCQKNPVRFWRLALLVKNRVILGSPLDPRASAIGA-SSGLGIIGTNDGLVYAWE 1230 (1329)
Q Consensus 1152 sGeD~AiwLLVST~Sdd~t~~Dlra~~~~gH~n~~wRLALl~K~siI~Gs~ldpra~afs~-SG~~gfaGT~DGlVYmWD 1230 (1329)
...=.+|.+..|+++ |.+ ++..+++|+-|++|++||
T Consensus 265 ------------------------~~~~~ah~~~vn~~~-------------------fnp~~~~ilAT~S~D~tV~LwD 301 (422)
T KOG0264|consen 265 ------------------------SHSVKAHSAEVNCVA-------------------FNPFNEFILATGSADKTVALWD 301 (422)
T ss_pred ------------------------cccccccCCceeEEE-------------------eCCCCCceEEeccCCCcEEEee
Confidence 122234566666644 222 356677899999999999
Q ss_pred ccc-cceeeeeecccCceEEEEEecCCCCceEEEecCCCCCCccccCC
Q 000725 1231 LSS-GNKLGILHHFKGGTVSCIATDDSGLQALAVAGDGPDGGRRQRDP 1277 (1329)
Q Consensus 1231 Lst-G~kL~tL~~Heg~rVSCVA~dps~p~~~AsA~d~~d~~~r~~~~ 1277 (1329)
+-. .+++.++.+|++ .|.+|..+|....++|+++ -|+.+.|||.
T Consensus 302 lRnL~~~lh~~e~H~d-ev~~V~WSPh~etvLASSg--~D~rl~vWDl 346 (422)
T KOG0264|consen 302 LRNLNKPLHTFEGHED-EVFQVEWSPHNETVLASSG--TDRRLNVWDL 346 (422)
T ss_pred chhcccCceeccCCCc-ceEEEEeCCCCCceeEecc--cCCcEEEEec
Confidence 965 448999999999 8999999999987788872 3444444443
No 137
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.22 E-value=2.3e-10 Score=130.75 Aligned_cols=240 Identities=15% Similarity=0.123 Sum_probs=164.4
Q ss_pred cccceeeecCCCcEEEEecCccCccccCCCccccccccccccCCCCcEEEEEecCcceeeeEEEecc-cceeEEEEe-cC
Q 000725 945 LERSCALFTPDGQYLVLLDSMKTPYCREGRSDCLCSTCTSHRLDENAVKIVKVKPGYVSVVAKLKTD-DCVQCILVC-EP 1022 (1329)
Q Consensus 945 ~ersglqFTPDGQ~LvLlgsik~p~CR~~~~dC~Cs~C~~s~seDNtVKIv~V~~G~vsll~kL~~h-~sV~cIlVc-Dp 1022 (1329)
=..++|||-|--+.|+ .++.|++|+|++|..-.-..++-+-=- -.++|-.|. .+
T Consensus 214 ~~I~sv~FHp~~plll------------------------vaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G 269 (514)
T KOG2055|consen 214 GGITSVQFHPTAPLLL------------------------VAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNG 269 (514)
T ss_pred CCceEEEecCCCceEE------------------------EecCCCcEEEEEecCccChhheeeeeccCccceeeecCCC
Confidence 3467899999999999 999999999999975433344443322 568888888 44
Q ss_pred C-eEEEecCCCeEEEEeccCcceEEE-------------ee------eeecCCCCcccceeE-----------EE-----
Q 000725 1023 K-HLIAVGESGKLHLWEMNSSWSAQV-------------EE------CIIPINDCIYPCIVE-----------MK----- 1066 (1329)
Q Consensus 1023 n-hLVSaSdDGkL~IWDM~SgWsm~t-------------ee------~Vi~~n~~v~p~I~e-----------lK----- 1066 (1329)
. .|+++|--.-+++|||.++=+.+. ++ ||+.. |+...|.= .|
T Consensus 270 ~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~--G~~G~I~lLhakT~eli~s~KieG~v 347 (514)
T KOG2055|consen 270 HSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIA--GNNGHIHLLHAKTKELITSFKIEGVV 347 (514)
T ss_pred ceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEc--ccCceEEeehhhhhhhhheeeeccEE
Confidence 4 688888888899999988765432 22 33311 11222221 12
Q ss_pred ---ecCCCCCeeEecCCCccEEEEEccccceeeeeccCccce---eEecccc----ccccccCcceEECcchhhh---c-
Q 000725 1067 ---RIPKCAPLVVGHNGFGEFGIWDISKRVLVSRFSAARASI---YQFFPIN----LFSWQRNGSVSMDASLELT---N- 1132 (1329)
Q Consensus 1067 ---rFpkss~lIVTgSGDgtf~LWDIskg~llqsF~ahs~sV---~sfsP~~----s~S~d~~v~tfd~~s~d~~---l- 1132 (1329)
.|..++..|+..+++|++-+|||.++.++.+|..-+..- ++.++.+ ++|--|.|++|+..++--- .
T Consensus 348 ~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkP 427 (514)
T KOG2055|consen 348 SDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKP 427 (514)
T ss_pred eeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCc
Confidence 888999999999999999999999999999998655432 2255666 7889999999997776443 1
Q ss_pred cccccccccCCCceeecCCCCccceEEEEeeccCccchhhcccccccCCCCcceeEEEeeeccceecCCC------CCCC
Q 000725 1133 TATTSLFSKHSEKSSFCPSVGEDSAIWLLVSTISDSDAQHNCMSRDCQKNPVRFWRLALLVKNRVILGSP------LDPR 1206 (1329)
Q Consensus 1133 eatv~~fSgdvn~VsF~P~sGeD~AiwLLVST~Sdd~t~~Dlra~~~~gH~n~~wRLALl~K~siI~Gs~------ldpr 1206 (1329)
..+++-....+++..|.| | |.-|-+-+.-...++ ||..+--=+++--.| =-+|
T Consensus 428 ik~~dNLtt~Itsl~Fn~----d-~qiLAiaS~~~knal----------------rLVHvPS~TVFsNfP~~n~~vg~vt 486 (514)
T KOG2055|consen 428 IKTVDNLTTAITSLQFNH----D-AQILAIASRVKKNAL----------------RLVHVPSCTVFSNFPTSNTKVGHVT 486 (514)
T ss_pred hhhhhhhheeeeeeeeCc----c-hhhhhhhhhccccce----------------EEEeccceeeeccCCCCCCcccceE
Confidence 344444445677799999 6 422222222222222 344333333332111 1268
Q ss_pred ceeeecCCCeEEeecCCCeEEEEEc
Q 000725 1207 ASAIGASSGLGIIGTNDGLVYAWEL 1231 (1329)
Q Consensus 1207 a~afs~SG~~gfaGT~DGlVYmWDL 1231 (1329)
+.+|||+|+|++-|.++|.|.+|.|
T Consensus 487 c~aFSP~sG~lAvGNe~grv~l~kL 511 (514)
T KOG2055|consen 487 CMAFSPNSGYLAVGNEAGRVHLFKL 511 (514)
T ss_pred EEEecCCCceEEeecCCCceeeEee
Confidence 8999999999999999999999987
No 138
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.20 E-value=4.6e-10 Score=124.57 Aligned_cols=299 Identities=13% Similarity=0.126 Sum_probs=176.0
Q ss_pred ccccccccccccccccccccceeeecCCCcEEEEecCccCccccCCCccccccccccccCCCCcEEEEEecCcceeeeEE
Q 000725 928 TSVMLPFLKDNFGREIALERSCALFTPDGQYLVLLDSMKTPYCREGRSDCLCSTCTSHRLDENAVKIVKVKPGYVSVVAK 1007 (1329)
Q Consensus 928 t~~llp~~~~~~~~~~~~ersglqFTPDGQ~LvLlgsik~p~CR~~~~dC~Cs~C~~s~seDNtVKIv~V~~G~vsll~k 1007 (1329)
-|+.+..++.--+ |-++|+|+.||.+|+ +++.|++||||++.- -+
T Consensus 75 Hpl~~~~LKgH~~-----~vt~~~FsSdGK~la------------------------t~~~Dr~Ir~w~~~D------F~ 119 (420)
T KOG2096|consen 75 HPLNVSVLKGHKK-----EVTDVAFSSDGKKLA------------------------TISGDRSIRLWDVRD------FE 119 (420)
T ss_pred cchhhhhhhccCC-----ceeeeEEcCCCceeE------------------------EEeCCceEEEEecch------hh
Confidence 4555555553322 568999999999999 999999999999876 13
Q ss_pred EecccceeEEEEe-cCCeEEEecCCCeEEEEeccCcceEEEeeeee-cCCCCcccce---------------eEEEecCC
Q 000725 1008 LKTDDCVQCILVC-EPKHLIAVGESGKLHLWEMNSSWSAQVEECII-PINDCIYPCI---------------VEMKRIPK 1070 (1329)
Q Consensus 1008 L~~h~sV~cIlVc-DpnhLVSaSdDGkL~IWDM~SgWsm~tee~Vi-~~n~~v~p~I---------------~elKrFpk 1070 (1329)
++.|..++-=+=- -|..++=+-|=+.+.+|-- +|-....+..+- .+-++..+.| ... -+-.
T Consensus 120 ~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~-~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~i-GiA~ 197 (420)
T KOG2096|consen 120 NKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVK-RGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINI-GIAG 197 (420)
T ss_pred hhhhhHhhccccCCCceEEEECCCcceEEEEEc-cCCEEEEEEeeecccCCCCcccccccccccchhcccceEEE-eecC
Confidence 3444333221111 2333333333333444432 333333333222 1212222222 222 4556
Q ss_pred CCCeeEecCCCccEEEEEccccceeeeeccCccceeE--ecccc----ccccccCcceEECc---chhhh-------ccc
Q 000725 1071 CAPLVVGHNGFGEFGIWDISKRVLVSRFSAARASIYQ--FFPIN----LFSWQRNGSVSMDA---SLELT-------NTA 1134 (1329)
Q Consensus 1071 ss~lIVTgSGDgtf~LWDIskg~llqsF~ahs~sV~s--fsP~~----s~S~d~~v~tfd~~---s~d~~-------lea 1134 (1329)
.+-.|.|+|-|-+|+|||+. |++++++.+-...-+- ++|+| .+.+--+|++|..- +++-+ |-+
T Consensus 198 ~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkG 276 (420)
T KOG2096|consen 198 NAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKG 276 (420)
T ss_pred CceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheecc
Confidence 78899999999999999999 9999999876655444 89998 55566678888752 22222 335
Q ss_pred cccccccCCCceeecCCCCccceEEEEeeccCccchhhccc----ccccCCCCcceeEEEeeeccceec-CCCCCCCcee
Q 000725 1135 TTSLFSKHSEKSSFCPSVGEDSAIWLLVSTISDSDAQHNCM----SRDCQKNPVRFWRLALLVKNRVIL-GSPLDPRASA 1209 (1329)
Q Consensus 1135 tv~~fSgdvn~VsF~P~sGeD~AiwLLVST~Sdd~t~~Dlr----a~~~~gH~n~~wRLALl~K~siI~-Gs~ldpra~a 1209 (1329)
|...|.. .+|+| + ...+..-+-+...++||.- +++ - .+-|. --++.+ .+-=.|--.+
T Consensus 277 H~saV~~----~aFsn----~-S~r~vtvSkDG~wriwdtdVrY~~~q----D--pk~Lk---~g~~pl~aag~~p~RL~ 338 (420)
T KOG2096|consen 277 HQSAVLA----AAFSN----S-STRAVTVSKDGKWRIWDTDVRYEAGQ----D--PKILK---EGSAPLHAAGSEPVRLE 338 (420)
T ss_pred chhheee----eeeCC----C-cceeEEEecCCcEEEeeccceEecCC----C--chHhh---cCCcchhhcCCCceEEE
Confidence 5555555 88888 3 2333333444455557654 111 0 00000 000000 0000233466
Q ss_pred eecCCCeEEeecCCCeEEEEEccccceeeeee-cccCceEEEEEecCCCCceEEEecCCCCCCccccCCCCCCCCcEEEe
Q 000725 1210 IGASSGLGIIGTNDGLVYAWELSSGNKLGILH-HFKGGTVSCIATDDSGLQALAVAGDGPDGGRRQRDPRHGQNDHVRIW 1288 (1329)
Q Consensus 1210 fs~SG~~gfaGT~DGlVYmWDLstG~kL~tL~-~Heg~rVSCVA~dps~p~~~AsA~d~~d~~~r~~~~~~s~D~~VRiW 1288 (1329)
++|+|..++. ++.-.+++.-.-+|+++.+++ .|++ .++||++++++-- +|+|+ |.-.|+.--..+|+..|..|
T Consensus 339 lsP~g~~lA~-s~gs~l~~~~se~g~~~~~~e~~h~~-~Is~is~~~~g~~-~atcG---dr~vrv~~ntpg~~~~V~~~ 412 (420)
T KOG2096|consen 339 LSPSGDSLAV-SFGSDLKVFASEDGKDYPELEDIHST-TISSISYSSDGKY-IATCG---DRYVRVIRNTPGWHSRVVKL 412 (420)
T ss_pred eCCCCcEEEe-ecCCceEEEEcccCccchhHHHhhcC-ceeeEEecCCCcE-Eeeec---ceeeeeecCCCchhhHHHHh
Confidence 7899887654 567788999999999999996 6776 9999999988776 88885 33344433233555544444
No 139
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.19 E-value=2.7e-10 Score=126.40 Aligned_cols=213 Identities=15% Similarity=0.213 Sum_probs=140.3
Q ss_pred eeEEEecc-cceeEEEEe-cCCeEEEecCCCeEEEEeccC-----cceEEEeeeeecCCCCcccceeEEEec-CCCCCee
Q 000725 1004 VVAKLKTD-DCVQCILVC-EPKHLIAVGESGKLHLWEMNS-----SWSAQVEECIIPINDCIYPCIVEMKRI-PKCAPLV 1075 (1329)
Q Consensus 1004 ll~kL~~h-~sV~cIlVc-DpnhLVSaSdDGkL~IWDM~S-----gWsm~tee~Vi~~n~~v~p~I~elKrF-pkss~lI 1075 (1329)
.+.+|++| +.|.|+.++ |..+|+++++||.|+|||+.- .-+|+.- ...+ | |. - .+| |.|...|
T Consensus 78 ~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~n----ve~d-h-pT--~-V~FapDc~s~v 148 (420)
T KOG2096|consen 78 NVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQN----VEYD-H-PT--R-VVFAPDCKSVV 148 (420)
T ss_pred hhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhcc----ccCC-C-ce--E-EEECCCcceEE
Confidence 35679999 999999999 999999999999999999554 1001000 0111 1 11 1 244 5566777
Q ss_pred EecCCCccEEEEEccccceeeeeccCccceeEeccccccccccCcceEECcchhhhccccccccccCCCceeecCCCCcc
Q 000725 1076 VGHNGFGEFGIWDISKRVLVSRFSAARASIYQFFPINLFSWQRNGSVSMDASLELTNTATTSLFSKHSEKSSFCPSVGED 1155 (1329)
Q Consensus 1076 VTgSGDgtf~LWDIskg~llqsF~ahs~sV~sfsP~~s~S~d~~v~tfd~~s~d~~leatv~~fSgdvn~VsF~P~sGeD 1155 (1329)
+..---.+++++-+.|++- +.--+-|.|. |.--.+++. .++.+.+=- -+
T Consensus 149 v~~~~g~~l~vyk~~K~~d-------G~~~~~~v~~------------D~~~f~~kh---------~v~~i~iGi---A~ 197 (420)
T KOG2096|consen 149 VSVKRGNKLCVYKLVKKTD-------GSGSHHFVHI------------DNLEFERKH---------QVDIINIGI---AG 197 (420)
T ss_pred EEEccCCEEEEEEeeeccc-------CCCCcccccc------------cccccchhc---------ccceEEEee---cC
Confidence 7766666778877766653 1111112222 211122221 112122211 24
Q ss_pred ceEEEEeeccCccchhhccc---ccccCCCCcceeEEEeeeccceecCCCCCCCceeeecCCCeEEeecCCCeEEEEEcc
Q 000725 1156 SAIWLLVSTISDSDAQHNCM---SRDCQKNPVRFWRLALLVKNRVILGSPLDPRASAIGASSGLGIIGTNDGLVYAWELS 1232 (1329)
Q Consensus 1156 ~AiwLLVST~Sdd~t~~Dlr---a~~~~gH~n~~wRLALl~K~siI~Gs~ldpra~afs~SG~~gfaGT~DGlVYmWDLs 1232 (1329)
-|+.|+..+.+.++.+||++ +.+-+. +++...-+++||+||.+++...--.|++||..
T Consensus 198 ~~k~imsas~dt~i~lw~lkGq~L~~idt-------------------nq~~n~~aavSP~GRFia~~gFTpDVkVwE~~ 258 (420)
T KOG2096|consen 198 NAKYIMSASLDTKICLWDLKGQLLQSIDT-------------------NQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPI 258 (420)
T ss_pred CceEEEEecCCCcEEEEecCCceeeeecc-------------------ccccccceeeCCCCcEEEEecCCCCceEEEEE
Confidence 47888877777788889999 333222 22334558999999999999999999999975
Q ss_pred c--------cceeeeeecccCceEEEEEecCCCCceEEEecCCCCCCccccCCCCCCCCcEEEeeeCC
Q 000725 1233 S--------GNKLGILHHFKGGTVSCIATDDSGLQALAVAGDGPDGGRRQRDPRHGQNDHVRIWKMDP 1292 (1329)
Q Consensus 1233 t--------G~kL~tL~~Heg~rVSCVA~dps~p~~~AsA~d~~d~~~r~~~~~~s~D~~VRiW~~~~ 1292 (1329)
= -+|+-.|.||+. -|.+.|++|+--+ ++++ |-||++|||+++-
T Consensus 259 f~kdG~fqev~rvf~LkGH~s-aV~~~aFsn~S~r-~vtv---------------SkDG~wriwdtdV 309 (420)
T KOG2096|consen 259 FTKDGTFQEVKRVFSLKGHQS-AVLAAAFSNSSTR-AVTV---------------SKDGKWRIWDTDV 309 (420)
T ss_pred eccCcchhhhhhhheeccchh-heeeeeeCCCcce-eEEE---------------ecCCcEEEeeccc
Confidence 3 357778999999 7999999987777 8888 7788888887763
No 140
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.18 E-value=4.2e-09 Score=113.35 Aligned_cols=279 Identities=9% Similarity=0.022 Sum_probs=191.9
Q ss_pred ccccceeeecCCCcEEEEecCccCccccCCCccccccccccccCCCCcEEEEE------ecCcce------eeeEEEecc
Q 000725 944 ALERSCALFTPDGQYLVLLDSMKTPYCREGRSDCLCSTCTSHRLDENAVKIVK------VKPGYV------SVVAKLKTD 1011 (1329)
Q Consensus 944 ~~ersglqFTPDGQ~LvLlgsik~p~CR~~~~dC~Cs~C~~s~seDNtVKIv~------V~~G~v------sll~kL~~h 1011 (1329)
.+..-.|+|.|.|.+-+ .+|..+|+||-+ +..|.- +++-|-..|
T Consensus 32 sqairav~fhp~g~lya------------------------vgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~kh 87 (350)
T KOG0641|consen 32 SQAIRAVAFHPAGGLYA------------------------VGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKH 87 (350)
T ss_pred hhheeeEEecCCCceEE------------------------eccCCceEEEEccccccCcccccccccCCCeEEeeeccc
Confidence 45667899999999999 899999999986 212221 555555555
Q ss_pred --cceeEEEEe-cCCeEEEecCCCeEEEEeccCcceEEEeeeeecCCCCcccceeEEEecCCC---CC--eeEecCCCcc
Q 000725 1012 --DCVQCILVC-EPKHLIAVGESGKLHLWEMNSSWSAQVEECIIPINDCIYPCIVEMKRIPKC---AP--LVVGHNGFGE 1083 (1329)
Q Consensus 1012 --~sV~cIlVc-DpnhLVSaSdDGkL~IWDM~SgWsm~tee~Vi~~n~~v~p~I~elKrFpks---s~--lIVTgSGDgt 1083 (1329)
+++-|++|+ +..-|+++|.|.+|++--.|....-.+--- +...-|-..|-++ .|... +. ++-+|-||..
T Consensus 88 hkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~d--le~nmhdgtirdl-~fld~~~s~~~il~s~gagdc~ 164 (350)
T KOG0641|consen 88 HKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHD--LEFNMHDGTIRDL-AFLDDPESGGAILASAGAGDCK 164 (350)
T ss_pred cCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcc--eeeeecCCceeee-EEecCCCcCceEEEecCCCcce
Confidence 999999999 999999999999999987665433222110 0000134445555 55433 33 3345567777
Q ss_pred EEEEEccccceeeeeccCccceeE-ecccc----ccccccCcceEECcchhhh--cc--ccccccc-cCCCceeecCCCC
Q 000725 1084 FGIWDISKRVLVSRFSAARASIYQ-FFPIN----LFSWQRNGSVSMDASLELT--NT--ATTSLFS-KHSEKSSFCPSVG 1153 (1329)
Q Consensus 1084 f~LWDIskg~llqsF~ahs~sV~s-fsP~~----s~S~d~~v~tfd~~s~d~~--le--atv~~fS-gdvn~VsF~P~sG 1153 (1329)
|-+=|..+|+-.+-+++|.+-|++ ++=.+ ++|.|.+|+.|+++-.-+. +. -+....+ .-+-.|+--|
T Consensus 165 iy~tdc~~g~~~~a~sghtghilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdp--- 241 (350)
T KOG0641|consen 165 IYITDCGRGQGFHALSGHTGHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDP--- 241 (350)
T ss_pred EEEeecCCCCcceeecCCcccEEEEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECC---
Confidence 777899999999999999999999 43333 8999999999998755444 21 1111111 1344488888
Q ss_pred ccceEEEEeeccCccchhhccc----ccccCCCCcceeEEEeeeccceecCCCCCCCceeeecCCCeEEeecCCCeEEEE
Q 000725 1154 EDSAIWLLVSTISDSDAQHNCM----SRDCQKNPVRFWRLALLVKNRVILGSPLDPRASAIGASSGLGIIGTNDGLVYAW 1229 (1329)
Q Consensus 1154 eD~AiwLLVST~Sdd~t~~Dlr----a~~~~gH~n~~wRLALl~K~siI~Gs~ldpra~afs~SG~~gfaGT~DGlVYmW 1229 (1329)
. +..|..+-.+.+-.+||+| .++|--|.... |.+-|+|+.-|+..|+.|..|++=
T Consensus 242 -s-grll~sg~~dssc~lydirg~r~iq~f~phsadi-------------------r~vrfsp~a~yllt~syd~~iklt 300 (350)
T KOG0641|consen 242 -S-GRLLASGHADSSCMLYDIRGGRMIQRFHPHSADI-------------------RCVRFSPGAHYLLTCSYDMKIKLT 300 (350)
T ss_pred -C-cceeeeccCCCceEEEEeeCCceeeeeCCCccce-------------------eEEEeCCCceEEEEecccceEEEe
Confidence 2 4334444445555569999 55555555544 458899999999999999999999
Q ss_pred Eccccceeee-----eecccCceEEEEEecCCCCceEEEecCCCCCCccccCCCCCCCCcEEEeeeC
Q 000725 1230 ELSSGNKLGI-----LHHFKGGTVSCIATDDSGLQALAVAGDGPDGGRRQRDPRHGQNDHVRIWKMD 1291 (1329)
Q Consensus 1230 DLstG~kL~t-----L~~Heg~rVSCVA~dps~p~~~AsA~d~~d~~~r~~~~~~s~D~~VRiW~~~ 1291 (1329)
||+- --... .--|++ .|.-+..||.+-- +.+. |.|.++.+|-..
T Consensus 301 dlqg-dla~el~~~vv~ehkd-k~i~~rwh~~d~s-fiss---------------sadkt~tlwa~~ 349 (350)
T KOG0641|consen 301 DLQG-DLAHELPIMVVAEHKD-KAIQCRWHPQDFS-FISS---------------SADKTATLWALN 349 (350)
T ss_pred eccc-chhhcCceEEEEeccC-ceEEEEecCccce-eeec---------------cCcceEEEeccC
Confidence 9863 22222 257888 7888899977754 5555 788999999754
No 141
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.18 E-value=1.1e-09 Score=124.06 Aligned_cols=264 Identities=17% Similarity=0.181 Sum_probs=177.3
Q ss_pred ccCCCCcEEEEEecCc-------ceeeeEEEecc-cceeEEEEe-cCCeEEEecCCCeEEEEecc--------C------
Q 000725 985 HRLDENAVKIVKVKPG-------YVSVVAKLKTD-DCVQCILVC-EPKHLIAVGESGKLHLWEMN--------S------ 1041 (1329)
Q Consensus 985 s~seDNtVKIv~V~~G-------~vsll~kL~~h-~sV~cIlVc-DpnhLVSaSdDGkL~IWDM~--------S------ 1041 (1329)
+|+.|+-||||.|+.+ .|+.+..|..| ..|.+|-+. +...|+|++++|++++|--. +
T Consensus 31 T~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~k 110 (434)
T KOG1009|consen 31 TAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNK 110 (434)
T ss_pred cccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCc
Confidence 9999999999998653 67888999999 999999999 99999999999999999865 2
Q ss_pred -cceEEEeeeeecCCCCcccceeEEEecCCCCCeeEecCCCccEEEEEccccceeeeeccCccceeE--ecccc----cc
Q 000725 1042 -SWSAQVEECIIPINDCIYPCIVEMKRIPKCAPLVVGHNGFGEFGIWDISKRVLVSRFSAARASIYQ--FFPIN----LF 1114 (1329)
Q Consensus 1042 -gWsm~tee~Vi~~n~~v~p~I~elKrFpkss~lIVTgSGDgtf~LWDIskg~llqsF~ahs~sV~s--fsP~~----s~ 1114 (1329)
.|++..-- .+|.--|+++ ...+++..+++|+.|.++.+||+.+|++++.+.+|...|+. .-|-. +-
T Consensus 111 e~w~v~k~l------r~h~~diydL-~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~ 183 (434)
T KOG1009|consen 111 EKWVVKKVL------RGHRDDIYDL-AWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASK 183 (434)
T ss_pred cceEEEEEe------cccccchhhh-hccCCCceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhh
Confidence 25544332 4688889999 88999999999999999999999999999999999999988 33433 45
Q ss_pred ccccCcceEECcchhhh----------------------c--cccccccccCCCceeecCCCCccceEEEEeeccCccch
Q 000725 1115 SWQRNGSVSMDASLELT----------------------N--TATTSLFSKHSEKSSFCPSVGEDSAIWLLVSTISDSDA 1170 (1329)
Q Consensus 1115 S~d~~v~tfd~~s~d~~----------------------l--eatv~~fSgdvn~VsF~P~sGeD~AiwLLVST~Sdd~t 1170 (1329)
|.|+...+++....... | ..|-..|.+ ..+|+| | |..||...+.-..-
T Consensus 184 s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFr---RlsfTP----d-G~llvtPag~~~~g 255 (434)
T KOG1009|consen 184 SSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFR---RLSFTP----D-GSLLVTPAGLFKVG 255 (434)
T ss_pred ccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhh---hcccCC----C-CcEEEcccceeeeC
Confidence 56665666654432221 1 112222222 278999 7 77777443321110
Q ss_pred h-hccc-ccccCCCCc--ceeEEEeeeccceecCC--------CCCCCceeeecCCCeEEeecCCCeEEEEEccccceee
Q 000725 1171 Q-HNCM-SRDCQKNPV--RFWRLALLVKNRVILGS--------PLDPRASAIGASSGLGIIGTNDGLVYAWELSSGNKLG 1238 (1329)
Q Consensus 1171 ~-~Dlr-a~~~~gH~n--~~wRLALl~K~siI~Gs--------~ldpra~afs~SG~~gfaGT~DGlVYmWDLstG~kL~ 1238 (1329)
- ..+. +.-|+++-- -.-||-...|..+-+++ +++-.-.-|+..-|.+|+=--.+-||++|+.+-.-+.
T Consensus 256 ~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~svyvydtq~~~P~~ 335 (434)
T KOG1009|consen 256 GGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKNSVYVYDTQTLEPLA 335 (434)
T ss_pred CceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeecceEEEeccccccceE
Confidence 0 0011 222222210 01133333444444443 2222222344556677777777899999999988887
Q ss_pred eeecccCceEEEEEecCCCCceEEEe
Q 000725 1239 ILHHFKGGTVSCIATDDSGLQALAVA 1264 (1329)
Q Consensus 1239 tL~~Heg~rVSCVA~dps~p~~~AsA 1264 (1329)
....=.=..++-||.++.++- +++.
T Consensus 336 ~v~nihy~~iTDiaws~dg~~-l~vS 360 (434)
T KOG1009|consen 336 VVDNIHYSAITDIAWSDDGSV-LLVS 360 (434)
T ss_pred EEeeeeeeeecceeecCCCcE-EEEe
Confidence 775333336899999966654 6666
No 142
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.18 E-value=3e-10 Score=122.88 Aligned_cols=243 Identities=18% Similarity=0.175 Sum_probs=182.6
Q ss_pred eEEEe-cc-cceeEEEEe-cCCeEEEecCCCeEEEEeccCcc---eEEEeeeeecCCCCcccceeEEE-ecCCCCCeeEe
Q 000725 1005 VAKLK-TD-DCVQCILVC-EPKHLIAVGESGKLHLWEMNSSW---SAQVEECIIPINDCIYPCIVEMK-RIPKCAPLVVG 1077 (1329)
Q Consensus 1005 l~kL~-~h-~sV~cIlVc-DpnhLVSaSdDGkL~IWDM~SgW---sm~tee~Vi~~n~~v~p~I~elK-rFpkss~lIVT 1077 (1329)
+++.+ .| +-||++..- =..+|+++|-||+|+|..+...= .+.++. ||...++.+- +-||.+.+|++
T Consensus 3 ~q~idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~-------Gh~GPVwqv~wahPk~G~iLAS 75 (299)
T KOG1332|consen 3 MQTIDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELT-------GHSGPVWKVAWAHPKFGTILAS 75 (299)
T ss_pred ceehhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEec-------CCCCCeeEEeecccccCcEeeE
Confidence 34443 45 778887777 78899999999999999965532 344444 8999999872 56889999999
Q ss_pred cCCCccEEEEEccccce--eeeeccCccceeE--ecccc------ccccccCcceEECcch-hhh--c--cccccccccC
Q 000725 1078 HNGFGEFGIWDISKRVL--VSRFSAARASIYQ--FFPIN------LFSWQRNGSVSMDASL-ELT--N--TATTSLFSKH 1142 (1329)
Q Consensus 1078 gSGDgtf~LWDIskg~l--lqsF~ahs~sV~s--fsP~~------s~S~d~~v~tfd~~s~-d~~--l--eatv~~fSgd 1142 (1329)
+|+||.+-||-=+.|+- ...+.+|..+|.+ +.|-+ +.|-||+|.++.+.+- .-. . .+|.. .
T Consensus 76 csYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~----G 151 (299)
T KOG1332|consen 76 CSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEI----G 151 (299)
T ss_pred eecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhcccc----c
Confidence 99999999999999976 7789999999999 88988 7788999999988765 111 2 34555 4
Q ss_pred CCceeecCCCCcc--c-------eEEEEeeccCccchhhccc------ccccCCCCcceeEEEeeeccceecCCCCCCCc
Q 000725 1143 SEKSSFCPSVGED--S-------AIWLLVSTISDSDAQHNCM------SRDCQKNPVRFWRLALLVKNRVILGSPLDPRA 1207 (1329)
Q Consensus 1143 vn~VsF~P~sGeD--~-------AiwLLVST~Sdd~t~~Dlr------a~~~~gH~n~~wRLALl~K~siI~Gs~ldpra 1207 (1329)
+|+|+..|.+-.+ + -+.|..+..+...+.|+.. .+++.+|..+.=.+|- +
T Consensus 152 vnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAw---------------a 216 (299)
T KOG1332|consen 152 VNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAW---------------A 216 (299)
T ss_pred cceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhh---------------c
Confidence 5559999953332 1 1335556677778888776 3457888877766552 2
Q ss_pred eeeecCCCeEEeecCCCeEEEEEcccc---ceeeeeecccCceEEEEEecCCCCceEEEecCCCCCCccccCCCCCCCCc
Q 000725 1208 SAIGASSGLGIIGTNDGLVYAWELSSG---NKLGILHHFKGGTVSCIATDDSGLQALAVAGDGPDGGRRQRDPRHGQNDH 1284 (1329)
Q Consensus 1208 ~afs~SG~~gfaGT~DGlVYmWDLstG---~kL~tL~~Heg~rVSCVA~dps~p~~~AsA~d~~d~~~r~~~~~~s~D~~ 1284 (1329)
-.++.---++++++.||+|.+|-...- -+-.-|+.|.+ .|..|.-+.+++. +|++ +-|+.
T Consensus 217 P~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~-~~w~vSWS~sGn~-LaVs---------------~GdNk 279 (299)
T KOG1332|consen 217 PSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPD-VVWRVSWSLSGNI-LAVS---------------GGDNK 279 (299)
T ss_pred cccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCc-ceEEEEEeccccE-EEEe---------------cCCcE
Confidence 234444568999999999999976511 13445677999 8999999999998 9999 56889
Q ss_pred EEEeee
Q 000725 1285 VRIWKM 1290 (1329)
Q Consensus 1285 VRiW~~ 1290 (1329)
|.+||-
T Consensus 280 vtlwke 285 (299)
T KOG1332|consen 280 VTLWKE 285 (299)
T ss_pred EEEEEe
Confidence 999984
No 143
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.14 E-value=5.5e-09 Score=123.41 Aligned_cols=285 Identities=14% Similarity=0.110 Sum_probs=191.7
Q ss_pred ccceeeecCCCcEEEEecCccCccccCCCccccccccccccCCCCcEEEEEecCcceeeeEEEecc-cceeEEEEe-cCC
Q 000725 946 ERSCALFTPDGQYLVLLDSMKTPYCREGRSDCLCSTCTSHRLDENAVKIVKVKPGYVSVVAKLKTD-DCVQCILVC-EPK 1023 (1329)
Q Consensus 946 ersglqFTPDGQ~LvLlgsik~p~CR~~~~dC~Cs~C~~s~seDNtVKIv~V~~G~vsll~kL~~h-~sV~cIlVc-Dpn 1023 (1329)
..|+++..|-+.-|+ -+++|+-+.+.++..|-..--.-|+-- ..|.||.|- +..
T Consensus 112 ~IWsiai~p~~~~l~------------------------IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~ 167 (691)
T KOG2048|consen 112 AIWSIAINPENTILA------------------------IGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGT 167 (691)
T ss_pred ceeEEEeCCccceEE------------------------eecCCceEEEEecCCceEEEEeecccccceEEEEEecCCcc
Confidence 467888888887777 668899999999999987777777777 899999999 999
Q ss_pred eEEEecCCCeEEEEeccCcceEEEeeeeecCCCCc----ccceeEEEecCCCCCeeEecCCCccEEEEEccccceeeeec
Q 000725 1024 HLIAVGESGKLHLWEMNSSWSAQVEECIIPINDCI----YPCIVEMKRIPKCAPLVVGHNGFGEFGIWDISKRVLVSRFS 1099 (1329)
Q Consensus 1024 hLVSaSdDGkL~IWDM~SgWsm~tee~Vi~~n~~v----~p~I~elKrFpkss~lIVTgSGDgtf~LWDIskg~llqsF~ 1099 (1329)
|||+++.||.|++||+.++-... .+-+--+.. .-+++.| .|.+ +.+||+|+..|++..||-.-|+++|+|.
T Consensus 168 ~i~~Gs~Dg~Iriwd~~~~~t~~---~~~~~~d~l~k~~~~iVWSv-~~Lr-d~tI~sgDS~G~V~FWd~~~gTLiqS~~ 242 (691)
T KOG2048|consen 168 KIAGGSIDGVIRIWDVKSGQTLH---IITMQLDRLSKREPTIVWSV-LFLR-DSTIASGDSAGTVTFWDSIFGTLIQSHS 242 (691)
T ss_pred EEEecccCceEEEEEcCCCceEE---EeeecccccccCCceEEEEE-EEee-cCcEEEecCCceEEEEcccCcchhhhhh
Confidence 99999999999999999876655 111223332 3367777 8885 8899999999999999999999999999
Q ss_pred cCccceeE--ecccc----ccccccCcceEECcchhhh------ccccccccccCCCceeecC----CCCccceEEEEee
Q 000725 1100 AARASIYQ--FFPIN----LFSWQRNGSVSMDASLELT------NTATTSLFSKHSEKSSFCP----SVGEDSAIWLLVS 1163 (1329)
Q Consensus 1100 ahs~sV~s--fsP~~----s~S~d~~v~tfd~~s~d~~------leatv~~fSgdvn~VsF~P----~sGeD~AiwLLVS 1163 (1329)
.|-++|++ ..+.+ +.-.|+.+.-|........ |..|.+.+.. +...+ +.|.|+- |+-
T Consensus 243 ~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs----~av~~~~l~sgG~d~~---l~i 315 (691)
T KOG2048|consen 243 CHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRS----MAVIENALISGGRDFT---LAI 315 (691)
T ss_pred hhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCccccee----eeeecceEEecceeeE---EEE
Confidence 99999999 66765 5566777766666555441 3444443333 22221 2444421 111
Q ss_pred ccCccchhhccc------------------ccc-cCCCCcceeEEEe---------------eeccceecCCCCCCCcee
Q 000725 1164 TISDSDAQHNCM------------------SRD-CQKNPVRFWRLAL---------------LVKNRVILGSPLDPRASA 1209 (1329)
Q Consensus 1164 T~Sdd~t~~Dlr------------------a~~-~~gH~n~~wRLAL---------------l~K~siI~Gs~ldpra~a 1209 (1329)
+.+.-...+|++ +.. ..-|.+--||+.. .+|+-=++-+ +|
T Consensus 316 ~~s~~~~~~~h~~~~~~p~~~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~------~a 389 (691)
T KOG2048|consen 316 CSSREFKNMDHRQKNLFPASDRVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISC------AA 389 (691)
T ss_pred ccccccCchhhhccccccccceeecCccceEEEEeccccccceeccCcccccccChhhheeeecCCccceee------ec
Confidence 112112223332 111 1246666677543 3344444444 89
Q ss_pred eecCCCeEEeec-----------------------------------------------CCCeEEEEEccccceee--ee
Q 000725 1210 IGASSGLGIIGT-----------------------------------------------NDGLVYAWELSSGNKLG--IL 1240 (1329)
Q Consensus 1210 fs~SG~~gfaGT-----------------------------------------------~DGlVYmWDLstG~kL~--tL 1240 (1329)
++|.|..++.|+ ++.-+..-|+.+++.-. .+
T Consensus 390 iSPdg~~Ia~st~~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~ 469 (691)
T KOG2048|consen 390 ISPDGNLIAISTVSRTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSI 469 (691)
T ss_pred cCCCCCEEEEeeccceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEEecccceeEEEEecCcchhhhhcc
Confidence 999999999998 55555666666554322 22
Q ss_pred --ecccCceEEEEEecCCCCceEEEecCCCCCCccccC
Q 000725 1241 --HHFKGGTVSCIATDDSGLQALAVAGDGPDGGRRQRD 1276 (1329)
Q Consensus 1241 --~~Heg~rVSCVA~dps~p~~~AsA~d~~d~~~r~~~ 1276 (1329)
++-.+ .++-++++|.+.- +|+++ ++|.+-+|.
T Consensus 470 ~~~~~~~-~I~~l~~SsdG~y-iaa~~--t~g~I~v~n 503 (691)
T KOG2048|consen 470 QSQAKCP-SISRLVVSSDGNY-IAAIS--TRGQIFVYN 503 (691)
T ss_pred ccccCCC-cceeEEEcCCCCE-EEEEe--ccceEEEEE
Confidence 12344 5888999988887 88884 444444443
No 144
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.11 E-value=4.5e-10 Score=129.06 Aligned_cols=259 Identities=16% Similarity=0.164 Sum_probs=166.0
Q ss_pred eeeEEEecc-cceeEEEEe-cCCeEEEecCCCeEEEEeccCcceEEEeeeeecCCCCcccceeEEEecCCCC-CeeEecC
Q 000725 1003 SVVAKLKTD-DCVQCILVC-EPKHLIAVGESGKLHLWEMNSSWSAQVEECIIPINDCIYPCIVEMKRIPKCA-PLVVGHN 1079 (1329)
Q Consensus 1003 sll~kL~~h-~sV~cIlVc-DpnhLVSaSdDGkL~IWDM~SgWsm~tee~Vi~~n~~v~p~I~elKrFpkss-~lIVTgS 1079 (1329)
.+..+|..| ++|.-|++. ....|+|+|+|+++++||-.++=..-.++ .+|...|+--|=+|.++ +-|++++
T Consensus 133 ~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~------SGH~~NvfQaKFiP~s~d~ti~~~s 206 (559)
T KOG1334|consen 133 RLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFE------SGHCNNVFQAKFIPFSGDRTIVTSS 206 (559)
T ss_pred hhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccc------cccccchhhhhccCCCCCcCceecc
Confidence 477899999 999999999 99999999999999999977765555554 35777777777556554 5689999
Q ss_pred CCccEEEEEcc--ccce-eeeeccCccceeE--ecccc-----ccccccCcceEECcchhhh-----ccccccccccCCC
Q 000725 1080 GFGEFGIWDIS--KRVL-VSRFSAARASIYQ--FFPIN-----LFSWQRNGSVSMDASLELT-----NTATTSLFSKHSE 1144 (1329)
Q Consensus 1080 GDgtf~LWDIs--kg~l-lqsF~ahs~sV~s--fsP~~-----s~S~d~~v~tfd~~s~d~~-----leatv~~fSgdvn 1144 (1329)
.||-+++=-|- +..- ++....|.+.|+- +-|.. +|.=|+.+.++|.+..--. +++.....- .-.
T Consensus 207 ~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v-~L~ 285 (559)
T KOG1334|consen 207 RDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERV-GLY 285 (559)
T ss_pred ccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccce-eee
Confidence 99998876543 2222 7788888888887 44544 6667777777776543222 010000000 000
Q ss_pred ceeecCCCCccceEEEEeeccCccchhhccc----------ccccCCC----------CcceeE------EEeeecccee
Q 000725 1145 KSSFCPSVGEDSAIWLLVSTISDSDAQHNCM----------SRDCQKN----------PVRFWR------LALLVKNRVI 1198 (1329)
Q Consensus 1145 ~VsF~P~sGeD~AiwLLVST~Sdd~t~~Dlr----------a~~~~gH----------~n~~wR------LALl~K~siI 1198 (1329)
.++..|..-. -+-|+..+.-.+.||.| ++.|--| ++..|+ ||.|....|.
T Consensus 286 ~Ia~~P~nt~----~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IY 361 (559)
T KOG1334|consen 286 TIAVDPRNTN----EFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIY 361 (559)
T ss_pred eEecCCCCcc----ccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceE
Confidence 1222221000 12233333333334444 0111111 122222 3333333222
Q ss_pred c-------CCCCCCCc----------------------eeeecCCCeEEeecCCCeEEEEEccccceeeeeecccCceEE
Q 000725 1199 L-------GSPLDPRA----------------------SAIGASSGLGIIGTNDGLVYAWELSSGNKLGILHHFKGGTVS 1249 (1329)
Q Consensus 1199 ~-------Gs~ldpra----------------------~afs~SG~~gfaGT~DGlVYmWDLstG~kL~tL~~Heg~rVS 1249 (1329)
| |+-+||-+ -.|+|-..|+++|+.=|.|++||=.+|+.+.-++|-.. +|-
T Consensus 362 LF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~-VVN 440 (559)
T KOG1334|consen 362 LFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRH-VVN 440 (559)
T ss_pred EeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccc-eEe
Confidence 2 33333322 46888899999999999999999999999999999888 899
Q ss_pred EEEecCCCCceEEEecCCCCCCccccCCCCCCCCcEEEee
Q 000725 1250 CIATDDSGLQALAVAGDGPDGGRRQRDPRHGQNDHVRIWK 1289 (1329)
Q Consensus 1250 CVA~dps~p~~~AsA~d~~d~~~r~~~~~~s~D~~VRiW~ 1289 (1329)
|+.-||-.|- +|+. |.|..||||.
T Consensus 441 CLEpHP~~Pv-LAsS---------------Gid~DVKIWT 464 (559)
T KOG1334|consen 441 CLEPHPHLPV-LASS---------------GIDHDVKIWT 464 (559)
T ss_pred ccCCCCCCch-hhcc---------------CCccceeeec
Confidence 9999999997 7777 5666666664
No 145
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.10 E-value=1.5e-09 Score=120.86 Aligned_cols=246 Identities=12% Similarity=0.183 Sum_probs=171.3
Q ss_pred ccCCCCcEEEEEecCcceeeeEEEecc-cceeEEEEe--cCCeEEEecCCCeEEEEeccCcceEEEeeeeecCCCCcccc
Q 000725 985 HRLDENAVKIVKVKPGYVSVVAKLKTD-DCVQCILVC--EPKHLIAVGESGKLHLWEMNSSWSAQVEECIIPINDCIYPC 1061 (1329)
Q Consensus 985 s~seDNtVKIv~V~~G~vsll~kL~~h-~sV~cIlVc--DpnhLVSaSdDGkL~IWDM~SgWsm~tee~Vi~~n~~v~p~ 1061 (1329)
.++--+.|||-++.++. ...-|.|| .+|+.|-.+ .|+.|+|+|.|..|++|++.+.-++..+- -..||--.
T Consensus 110 ~~G~~GvIrVid~~~~~--~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfG----G~egHrde 183 (385)
T KOG1034|consen 110 AGGYLGVIRVIDVVSGQ--CSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFG----GVEGHRDE 183 (385)
T ss_pred eecceeEEEEEecchhh--hccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEec----ccccccCc
Confidence 56667889999999988 88999999 999999999 89999999999999999999987777654 33468999
Q ss_pred eeEEEecCCCCCeeEecCCCccEEEEEccccceeeeeccCccceeEeccccc----cccccCcceEECcchhhhcccccc
Q 000725 1062 IVEMKRIPKCAPLVVGHNGFGEFGIWDISKRVLVSRFSAARASIYQFFPINL----FSWQRNGSVSMDASLELTNTATTS 1137 (1329)
Q Consensus 1062 I~elKrFpkss~lIVTgSGDgtf~LWDIskg~llqsF~ahs~sV~sfsP~~s----~S~d~~v~tfd~~s~d~~leatv~ 1137 (1329)
|+.+ -|..++..|++|+.|-++.+|+|.+.+. ..|-.-++.|+|..+ -..-..+..|++.++.+.--+|+.
T Consensus 184 VLSv-D~~~~gd~i~ScGmDhslk~W~l~~~~f----~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvr 258 (385)
T KOG1034|consen 184 VLSV-DFSLDGDRIASCGMDHSLKLWRLNVKEF----KNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVR 258 (385)
T ss_pred EEEE-EEcCCCCeeeccCCcceEEEEecChhHH----hhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHH
Confidence 9999 9999999999999999999999986544 333333344555551 011112333444444433246777
Q ss_pred ccccCCCceeecCCCCccceEEEEeeccCccchhhcc-c-------ccccCCCCcceeEEEeeeccceecCCCCCCCcee
Q 000725 1138 LFSKHSEKSSFCPSVGEDSAIWLLVSTISDSDAQHNC-M-------SRDCQKNPVRFWRLALLVKNRVILGSPLDPRASA 1209 (1329)
Q Consensus 1138 ~fSgdvn~VsF~P~sGeD~AiwLLVST~Sdd~t~~Dl-r-------a~~~~gH~n~~wRLALl~K~siI~Gs~ldpra~a 1209 (1329)
||-. ..++-+.+..|-.|.. |-..+ ..|+. + +-+|.--....|-+. -+
T Consensus 259 w~gd----~ilSkscenaI~~w~p-gkl~e--~~~~vkp~es~~Ti~~~~~~~~c~iWfir-----------------f~ 314 (385)
T KOG1034|consen 259 WFGD----FILSKSCENAIVCWKP-GKLEE--SIHNVKPPESATTILGEFDYPMCDIWFIR-----------------FA 314 (385)
T ss_pred HHhh----heeecccCceEEEEec-chhhh--hhhccCCCccceeeeeEeccCccceEEEE-----------------Ee
Confidence 6654 4444322223332322 11111 11122 1 344445566788877 47
Q ss_pred eecCCCeEEeecCCCeEEEEEccccce--eeeeecccCc-eEEEEEecCCCCceEEEec
Q 000725 1210 IGASSGLGIIGTNDGLVYAWELSSGNK--LGILHHFKGG-TVSCIATDDSGLQALAVAG 1265 (1329)
Q Consensus 1210 fs~SG~~gfaGT~DGlVYmWDLstG~k--L~tL~~Heg~-rVSCVA~dps~p~~~AsA~ 1265 (1329)
|.+-++.+++|-..|.||+|||....- ..+|.++..+ +|.-.+++-.+...+++++
T Consensus 315 ~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcd 373 (385)
T KOG1034|consen 315 FDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCD 373 (385)
T ss_pred ecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeC
Confidence 788999999999999999999987754 5566665543 5666677777787777775
No 146
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.08 E-value=8.8e-11 Score=140.23 Aligned_cols=260 Identities=15% Similarity=0.170 Sum_probs=198.8
Q ss_pred cCCCccccccccccccCCCCcEEEEEecCcceeeeEEEecc-cceeEEEEe-cCCeEEEecCCCeEEEEeccCcceEEEe
Q 000725 971 REGRSDCLCSTCTSHRLDENAVKIVKVKPGYVSVVAKLKTD-DCVQCILVC-EPKHLIAVGESGKLHLWEMNSSWSAQVE 1048 (1329)
Q Consensus 971 R~~~~dC~Cs~C~~s~seDNtVKIv~V~~G~vsll~kL~~h-~sV~cIlVc-DpnhLVSaSdDGkL~IWDM~SgWsm~te 1048 (1329)
|.+.|.|.|-+=..-++ |||-. -.+++|-+| ..|-|+.+= -.++|+++++|+.++||-|.++-+.+.-
T Consensus 159 ~a~~i~~at~~~akPgt------mvqkm----k~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~ 228 (1113)
T KOG0644|consen 159 RAPSIGCATFSIAKPGT------MVQKM----KNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASC 228 (1113)
T ss_pred cCcccccceeeecCcHH------HHHHH----HHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccC
Confidence 66778888765444333 33321 256788999 899999999 9999999999999999999998777766
Q ss_pred eeeecCCCCcccceeEEEecCCCCCeeEecCCCccEEEEEccccceeeeeccCccceeE--eccccccccccCcceEECc
Q 000725 1049 ECIIPINDCIYPCIVEMKRIPKCAPLVVGHNGFGEFGIWDISKRVLVSRFSAARASIYQ--FFPINLFSWQRNGSVSMDA 1126 (1329)
Q Consensus 1049 e~Vi~~n~~v~p~I~elKrFpkss~lIVTgSGDgtf~LWDIskg~llqsF~ahs~sV~s--fsP~~s~S~d~~v~tfd~~ 1126 (1329)
. ||+.-|-.+ +++..--+|+++|.|.-|++|=+..|..++.+-+|++.|++ |+|--+.+-||++++|+.+
T Consensus 229 r-------Ghs~ditdl-avs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~sss~dgt~~~wd~r 300 (1113)
T KOG0644|consen 229 R-------GHSGDITDL-AVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRASSSDDGTCRIWDAR 300 (1113)
T ss_pred C-------CCccccchh-ccchhhhhhhhcccCceEEEEecCCCchHHHHhccccceeeeccCccccCCCCCceEecccc
Confidence 6 899999999 99999999999999999999999999999999999999999 9999988999999999998
Q ss_pred -chhhhcccccccccc--CCCceeecCCCCccceEEEEeeccCccchhhcccccccCCCCcceeEEEeeeccceecCCCC
Q 000725 1127 -SLELTNTATTSLFSK--HSEKSSFCPSVGEDSAIWLLVSTISDSDAQHNCMSRDCQKNPVRFWRLALLVKNRVILGSPL 1203 (1329)
Q Consensus 1127 -s~d~~leatv~~fSg--dvn~VsF~P~sGeD~AiwLLVST~Sdd~t~~Dlra~~~~gH~n~~wRLALl~K~siI~Gs~l 1203 (1329)
..-..- ---..|.+ .+++.-|.- .|.+|+ |.+++...-+++...+-.| -+.+||-.
T Consensus 301 ~~~~~y~-prp~~~~~~~~~~s~~~~~-~~~~f~------Tgs~d~ea~n~e~~~l~~~-----------~~~lif~t-- 359 (1113)
T KOG0644|consen 301 LEPRIYV-PRPLKFTEKDLVDSILFEN-NGDRFL------TGSRDGEARNHEFEQLAWR-----------SNLLIFVT-- 359 (1113)
T ss_pred ccccccC-CCCCCcccccceeeeeccc-cccccc------cccCCcccccchhhHhhhh-----------ccceEEEe--
Confidence 111110 00011222 344455663 677777 8888777755544432222 23344433
Q ss_pred CCCceeeecCCCeEEeecCCCeEEEEEccccceeeeeecccCceEEEEEecCCCCceEEEecCCCCCCccccCC
Q 000725 1204 DPRASAIGASSGLGIIGTNDGLVYAWELSSGNKLGILHHFKGGTVSCIATDDSGLQALAVAGDGPDGGRRQRDP 1277 (1329)
Q Consensus 1204 dpra~afs~SG~~gfaGT~DGlVYmWDLstG~kL~tL~~Heg~rVSCVA~dps~p~~~AsA~d~~d~~~r~~~~ 1277 (1329)
++ +....+.++.=+|-.+.+|.+.+|.-++.|-+|.+ .|.-+.+||-.|+-+-+| +-||..-|||-
T Consensus 360 --~s---sd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd-~~yvLd~Hpfn~ri~msa--g~dgst~iwdi 425 (1113)
T KOG0644|consen 360 --RS---SDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSD-EVYVLDVHPFNPRIAMSA--GYDGSTIIWDI 425 (1113)
T ss_pred --cc---ccccccceeeeeeeEeeeeecccchhhhhhccccc-ceeeeeecCCCcHhhhhc--cCCCceEeeec
Confidence 22 23337888888999999999999999999999999 899999999999955555 46777777764
No 147
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.07 E-value=5.1e-09 Score=115.70 Aligned_cols=245 Identities=13% Similarity=0.085 Sum_probs=172.9
Q ss_pred ccCCCCcEEEEEecCcce----eeeEEE---------ecc-cceeEEEEe--cCCeEEEecCCCeEEEEeccCcceEEEe
Q 000725 985 HRLDENAVKIVKVKPGYV----SVVAKL---------KTD-DCVQCILVC--EPKHLIAVGESGKLHLWEMNSSWSAQVE 1048 (1329)
Q Consensus 985 s~seDNtVKIv~V~~G~v----sll~kL---------~~h-~sV~cIlVc--DpnhLVSaSdDGkL~IWDM~SgWsm~te 1048 (1329)
+|+.|+.+-+||++.... .++.|- .+| ++|..+.|- |.-.+.|+|=|.+|+|||.+|-=.+-.+
T Consensus 61 SGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F 140 (397)
T KOG4283|consen 61 SGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDF 140 (397)
T ss_pred ecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEe
Confidence 999999999999875331 122222 356 888888888 9999999999999999999985544444
Q ss_pred eeeecCCCCcccceeEEEecCCCCCeeEecCCCccEEEEEccccceeeeeccCccceeE--ecccc-----ccccccCcc
Q 000725 1049 ECIIPINDCIYPCIVEMKRIPKCAPLVVGHNGFGEFGIWDISKRVLVSRFSAARASIYQ--FFPIN-----LFSWQRNGS 1121 (1329)
Q Consensus 1049 e~Vi~~n~~v~p~I~elKrFpkss~lIVTgSGDgtf~LWDIskg~llqsF~ahs~sV~s--fsP~~-----s~S~d~~v~ 1121 (1329)
. +..+ ||.--|.- +.-+--||+.|--|-.++|-||++|.+-.++.||.+-|++ .+|.. ++|-||.|+
T Consensus 141 ~---me~~-VYshamSp--~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~ir 214 (397)
T KOG4283|consen 141 K---MEGK-VYSHAMSP--MAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIR 214 (397)
T ss_pred e---cCce-eehhhcCh--hhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEE
Confidence 3 1111 22222221 1112347999999999999999999999999999999999 89988 899999999
Q ss_pred eEECcch-hhh--c----------cccccccccCCCceeecCCCCccceEEEEeeccCccchhhcccc-----cccCC-C
Q 000725 1122 VSMDASL-ELT--N----------TATTSLFSKHSEKSSFCPSVGEDSAIWLLVSTISDSDAQHNCMS-----RDCQK-N 1182 (1329)
Q Consensus 1122 tfd~~s~-d~~--l----------eatv~~fSgdvn~VsF~P~sGeD~AiwLLVST~Sdd~t~~Dlra-----~~~~g-H 1182 (1329)
.||++-. -+. | ..++..+.+++|..+|+- | |-.++.-+.++-.+.|+... ..|.. -
T Consensus 215 lWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tS----d-~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~ 289 (397)
T KOG4283|consen 215 LWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTS----D-ARYLASCGTDDRIRVWNMESGRNTLREFGPII 289 (397)
T ss_pred EEEeecccceeEEeecccCccCccccccccccceeeeeeecc----c-chhhhhccCccceEEeecccCccccccccccc
Confidence 9999866 111 1 236777888999999996 6 77777777788888898872 22110 0
Q ss_pred CcceeEEEeeeccceecCCCCCCCceeeecCCCeEEeecCCCeEEEEEccccceeeeeecccCceEEEEEecCCC
Q 000725 1183 PVRFWRLALLVKNRVILGSPLDPRASAIGASSGLGIIGTNDGLVYAWELSSGNKLGILHHFKGGTVSCIATDDSG 1257 (1329)
Q Consensus 1183 ~n~~wRLALl~K~siI~Gs~ldpra~afs~SG~~gfaGT~DGlVYmWDLstG~kL~tL~~Heg~rVSCVA~dps~ 1257 (1329)
+|. .+=||. ..-+....-++-=-+|+.+|+.-+.+|..+..|..|-. +|-|-+.-|.=
T Consensus 290 ~n~----------~~~~~~------~~~~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k-~i~c~~~~~~f 347 (397)
T KOG4283|consen 290 HNQ----------TTSFAV------HIQSMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLK-RINCAAYRPDF 347 (397)
T ss_pred ccc----------cccceE------EEeecccceEEEEecCCeEEEEEccCceEEEeeecccc-eeeEEeecCch
Confidence 111 111222 11111122222223559999999999999999999966 89998888443
No 148
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.07 E-value=1.5e-09 Score=122.28 Aligned_cols=203 Identities=14% Similarity=0.203 Sum_probs=143.6
Q ss_pred cceeEEEEe---cCCeEEEecCCCeEEEEeccCcceEEEe-eeee--------cCCCCcccceeEEEecCC-CCCeeEec
Q 000725 1012 DCVQCILVC---EPKHLIAVGESGKLHLWEMNSSWSAQVE-ECII--------PINDCIYPCIVEMKRIPK-CAPLVVGH 1078 (1329)
Q Consensus 1012 ~sV~cIlVc---DpnhLVSaSdDGkL~IWDM~SgWsm~te-e~Vi--------~~n~~v~p~I~elKrFpk-ss~lIVTg 1078 (1329)
+.+.-|-+. +.-.+++=++.|+++||||...=-.-.. .+.+ -...+|...=+.| .+.+ -...++||
T Consensus 152 g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~L-dWSp~~~g~LlsG 230 (440)
T KOG0302|consen 152 GGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGL-DWSPIKTGRLLSG 230 (440)
T ss_pred cccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceee-ecccccccccccC
Confidence 555555555 5567788899999999996542110000 0111 1122233333334 4444 23458899
Q ss_pred CCCccEEEEEccccce---eeeeccCccceeE--ecccc-----ccccccCcceEECcchhhhccccccccccCCCceee
Q 000725 1079 NGFGEFGIWDISKRVL---VSRFSAARASIYQ--FFPIN-----LFSWQRNGSVSMDASLELTNTATTSLFSKHSEKSSF 1148 (1329)
Q Consensus 1079 SGDgtf~LWDIskg~l---lqsF~ahs~sV~s--fsP~~-----s~S~d~~v~tfd~~s~d~~leatv~~fSgdvn~VsF 1148 (1329)
+.-+.|.+|-.++|.- -+.|.+|..+|=- .+|.+ +||.|+.|++||++++-++-.-++-.+.+|+|-++|
T Consensus 231 Dc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISW 310 (440)
T KOG0302|consen 231 DCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISW 310 (440)
T ss_pred ccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEc
Confidence 9999999999999887 6789999999965 89998 999999999999999866611011223335554444
Q ss_pred cCCCCccceEEEEeeccCccchhhcccccccCCCCcceeEEEeeeccceecCCCCCCCceeeecCCCeEEeecCCCeEEE
Q 000725 1149 CPSVGEDSAIWLLVSTISDSDAQHNCMSRDCQKNPVRFWRLALLVKNRVILGSPLDPRASAIGASSGLGIIGTNDGLVYA 1228 (1329)
Q Consensus 1149 ~P~sGeD~AiwLLVST~Sdd~t~~Dlra~~~~gH~n~~wRLALl~K~siI~Gs~ldpra~afs~SG~~gfaGT~DGlVYm 1228 (1329)
.- --.++++|..||++.+
T Consensus 311 nr--------------------------------------------------------------~~~lLasG~DdGt~~i 328 (440)
T KOG0302|consen 311 NR--------------------------------------------------------------REPLLASGGDDGTLSI 328 (440)
T ss_pred cC--------------------------------------------------------------CcceeeecCCCceEEE
Confidence 32 1125788999999999
Q ss_pred EEc---cccceeeeeecccCceEEEEEecCCCCceEEEecCCCCCCccccCCCCCCCCcEEEeeeCCC
Q 000725 1229 WEL---SSGNKLGILHHFKGGTVSCIATDDSGLQALAVAGDGPDGGRRQRDPRHGQNDHVRIWKMDPN 1293 (1329)
Q Consensus 1229 WDL---stG~kL~tL~~Heg~rVSCVA~dps~p~~~AsA~d~~d~~~r~~~~~~s~D~~VRiW~~~~~ 1293 (1329)
||| ..|+.++++..|+. -++||+-||-..-++|+. |.|++|-||++.-.
T Consensus 329 wDLR~~~~~~pVA~fk~Hk~-pItsieW~p~e~s~iaas---------------g~D~QitiWDlsvE 380 (440)
T KOG0302|consen 329 WDLRQFKSGQPVATFKYHKA-PITSIEWHPHEDSVIAAS---------------GEDNQITIWDLSVE 380 (440)
T ss_pred EEhhhccCCCcceeEEeccC-CeeEEEeccccCceEEec---------------cCCCcEEEEEeecc
Confidence 997 56789999999999 899999999998878887 78899999987543
No 149
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.05 E-value=2.8e-08 Score=115.11 Aligned_cols=276 Identities=15% Similarity=0.196 Sum_probs=188.4
Q ss_pred ccccCCCCcEEEEEecCcceeeeEEEecc-cceeEEEEe--cCCeEEEecCCCeEEEEeccCcceEEEeeeeecCCCCcc
Q 000725 983 TSHRLDENAVKIVKVKPGYVSVVAKLKTD-DCVQCILVC--EPKHLIAVGESGKLHLWEMNSSWSAQVEECIIPINDCIY 1059 (1329)
Q Consensus 983 ~~s~seDNtVKIv~V~~G~vsll~kL~~h-~sV~cIlVc--DpnhLVSaSdDGkL~IWDM~SgWsm~tee~Vi~~n~~v~ 1059 (1329)
.-+-|.+-.+-+||-..|. .+.+.++- +.|.-..+- |||-||+.| -|-|..|+...+=..++--.+--..+
T Consensus 173 ~vD~s~~h~lSVWdWqk~~--~~~~vk~sne~v~~a~FHPtd~nliit~G-k~H~~Fw~~~~~~l~k~~~~fek~ek--- 246 (626)
T KOG2106|consen 173 AVDDSNPHMLSVWDWQKKA--KLGPVKTSNEVVFLATFHPTDPNLIITCG-KGHLYFWTLRGGSLVKRQGIFEKREK--- 246 (626)
T ss_pred EecCCCccccchhhchhhh--ccCcceeccceEEEEEeccCCCcEEEEeC-CceEEEEEccCCceEEEeeccccccc---
Confidence 3477888889999988777 55555555 555555554 999999999 67899999888877666552222222
Q ss_pred cceeEEEecCCCCCeeEecCCCccEEEEEccccceeeeeccCccceeE--ecccc---ccccccCcceEECcchhhhccc
Q 000725 1060 PCIVEMKRIPKCAPLVVGHNGFGEFGIWDISKRVLVSRFSAARASIYQ--FFPIN---LFSWQRNGSVSMDASLELTNTA 1134 (1329)
Q Consensus 1060 p~I~elKrFpkss~lIVTgSGDgtf~LWDIskg~llqsF~ahs~sV~s--fsP~~---s~S~d~~v~tfd~~s~d~~lea 1134 (1329)
..++++ .|.+++ .||||+.+|+|.||+...-...+..+||-+-||+ ...++ ++-=|+.|..|+ .+..+.++.
T Consensus 247 k~Vl~v-~F~eng-dviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllSGgKDRki~~Wd-~~y~k~r~~ 323 (626)
T KOG2106|consen 247 KFVLCV-TFLENG-DVITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLSGGKDRKIILWD-DNYRKLRET 323 (626)
T ss_pred eEEEEE-EEcCCC-CEEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEeecCccceEEecc-ccccccccc
Confidence 456777 899855 5789999999999999888887777799999999 44455 566788888888 333333322
Q ss_pred cccccccCCCceeecCCCCccceEEEEeeccCccchh---hcccccccCCCCcceeEEEee------------------e
Q 000725 1135 TTSLFSKHSEKSSFCPSVGEDSAIWLLVSTISDSDAQ---HNCMSRDCQKNPVRFWRLALL------------------V 1193 (1329)
Q Consensus 1135 tv~~fSgdvn~VsF~P~sGeD~AiwLLVST~Sdd~t~---~Dlra~~~~gH~n~~wRLALl------------------~ 1193 (1329)
...--.|-+-.| .| .+-| |||+|-.+.+-+ .+--.-.-+||.-.-|-||+- -
T Consensus 324 elPe~~G~iRtv--~e-~~~d----i~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~ 396 (626)
T KOG2106|consen 324 ELPEQFGPIRTV--AE-GKGD----ILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN 396 (626)
T ss_pred cCchhcCCeeEE--ec-CCCc----EEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc
Confidence 222111211112 11 1112 677776666544 111123344555555554432 1
Q ss_pred ccceecCCC-CCC-CceeeecCCCeEEeecCCCeEEEEEccccceeeeeecccCceEEEEEecCCCCceEEEecCCCCCC
Q 000725 1194 KNRVILGSP-LDP-RASAIGASSGLGIIGTNDGLVYAWELSSGNKLGILHHFKGGTVSCIATDDSGLQALAVAGDGPDGG 1271 (1329)
Q Consensus 1194 K~siI~Gs~-ldp-ra~afs~SG~~gfaGT~DGlVYmWDLstG~kL~tL~~Heg~rVSCVA~dps~p~~~AsA~d~~d~~ 1271 (1329)
++.+++-.+ .|| ++++|.|+| +++.|+..|.-.+-|.-+ +.+-++|.-+ ...+||+++|++.- +|+|
T Consensus 397 ~~k~~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~-~~lv~~~~d~-~~ls~v~ysp~G~~-lAvg------- 465 (626)
T KOG2106|consen 397 DHKLEWTKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTET-QDLVTIHTDN-EQLSVVRYSPDGAF-LAVG------- 465 (626)
T ss_pred CCceeEEEEecCceeEeeccCcc-eEEEeeccceEEEEeccc-ceeEEEEecC-CceEEEEEcCCCCE-EEEe-------
Confidence 333333222 233 678899999 999999999999999999 5566666554 48999999999987 9999
Q ss_pred ccccCCCCCCCCcEEEeeeCCC
Q 000725 1272 RRQRDPRHGQNDHVRIWKMDPN 1293 (1329)
Q Consensus 1272 ~r~~~~~~s~D~~VRiW~~~~~ 1293 (1329)
|.|++|-||.++.|
T Consensus 466 --------s~d~~iyiy~Vs~~ 479 (626)
T KOG2106|consen 466 --------SHDNHIYIYRVSAN 479 (626)
T ss_pred --------cCCCeEEEEEECCC
Confidence 89999999998876
No 150
>PF05964 FYRN: F/Y-rich N-terminus; InterPro: IPR003888 The "FY-rich" domain N-terminal region is sometimes closely juxtaposed with the C-terminal region (IPR003889 from INTERPRO), but sometimes is far distant. It is of unknown function, but occurs frequently in chromatin-associated proteins like trithorax and its homologues.; GO: 0005634 nucleus; PDB: 2WZO_A.
Probab=99.05 E-value=2.1e-10 Score=98.57 Aligned_cols=47 Identities=28% Similarity=0.497 Sum_probs=32.7
Q ss_pred ccCeeEEEeeeeeeCCccccccccCCCCCCcccCCceeEEeeecc-------ceEEEEEEe
Q 000725 18 SEGLEIVSIGYLYKGPWEKKYWSSSRGKDRYPYPVGYHAVQAHNG-------STCKMEIHE 71 (1329)
Q Consensus 18 sg~LtVlSLG~Vv~g~wdrkywsSSr~~dRYIyPVGY~A~Rky~s-------t~YkMEIle 71 (1329)
.|+|+|++||+|+. +++.||+ ++||||+||+++|.|.| +.|+|||+|
T Consensus 1 igsl~v~sLG~i~~---~~~~fh~----~~~IyP~Gy~s~R~y~S~~~p~~~~~Y~~~Ild 54 (54)
T PF05964_consen 1 IGSLTVHSLGKIVP---DRPAFHS----ERYIYPVGYKSSRLYWSTVDPRRRCRYTCEILD 54 (54)
T ss_dssp -TTEEEEEEEE------SSGGGB-----SS-B--EEEEEEEEEE-SS-TTSEEEEEEEEE-
T ss_pred CCceEEEECeEEeC---CCCCccC----CCEEeeCCEEEEEEEccccCCCCEEEEEEEEeC
Confidence 37899999999985 4457755 99999999999999987 479999986
No 151
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.05 E-value=7.8e-09 Score=114.30 Aligned_cols=230 Identities=13% Similarity=0.110 Sum_probs=168.0
Q ss_pred cceeEEEEe-cCCeEEEecCCCeEEEEeccCcceEEEeeeeecCCCCcccceeEEEecCCCCCeeEecCCCccEEEEEcc
Q 000725 1012 DCVQCILVC-EPKHLIAVGESGKLHLWEMNSSWSAQVEECIIPINDCIYPCIVEMKRIPKCAPLVVGHNGFGEFGIWDIS 1090 (1329)
Q Consensus 1012 ~sV~cIlVc-DpnhLVSaSdDGkL~IWDM~SgWsm~tee~Vi~~n~~v~p~I~elKrFpkss~lIVTgSGDgtf~LWDIs 1090 (1329)
+.|..|-+. -+++|..+|=||.|+++|+++- .++..+ -|...+++. +|-. ...|++|+-||.+++.|+.
T Consensus 14 d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~-~l~~~~-------~~~~plL~c-~F~d-~~~~~~G~~dg~vr~~Dln 83 (323)
T KOG1036|consen 14 DGISSVKFSPSSSDLLVSSWDGSLRLYDVPAN-SLKLKF-------KHGAPLLDC-AFAD-ESTIVTGGLDGQVRRYDLN 83 (323)
T ss_pred hceeeEEEcCcCCcEEEEeccCcEEEEeccch-hhhhhe-------ecCCceeee-eccC-CceEEEeccCceEEEEEec
Confidence 788999998 7788888889999999999887 666666 578888888 8887 8899999999999999999
Q ss_pred ccceeeeeccCccceeE--ecccc----ccccccCcceEECcchhhhccccccccccCCCceeecCCCCccceEEEEeec
Q 000725 1091 KRVLVSRFSAARASIYQ--FFPIN----LFSWQRNGSVSMDASLELTNTATTSLFSKHSEKSSFCPSVGEDSAIWLLVST 1164 (1329)
Q Consensus 1091 kg~llqsF~ahs~sV~s--fsP~~----s~S~d~~v~tfd~~s~d~~leatv~~fSgdvn~VsF~P~sGeD~AiwLLVST 1164 (1329)
+|+-.+ +-.|...|.+ ++|-. +++||++|+.||.+. +... ...+..+--|....+. --|+|+|
T Consensus 84 ~~~~~~-igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~--~~~~-----~~~d~~kkVy~~~v~g---~~LvVg~ 152 (323)
T KOG1036|consen 84 TGNEDQ-IGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRN--KVVV-----GTFDQGKKVYCMDVSG---NRLVVGT 152 (323)
T ss_pred CCccee-eccCCCceEEEEeeccCCeEEEcccCccEEEEeccc--cccc-----cccccCceEEEEeccC---CEEEEee
Confidence 998644 4567788877 55444 999999999999987 2210 0001112225543333 4689999
Q ss_pred cCccchhhccc-ccccCCCCcceeEEEeeeccceecCCCCCCCceeeecCCCeEEeecCCCeEEEEEcccc----ceeee
Q 000725 1165 ISDSDAQHNCM-SRDCQKNPVRFWRLALLVKNRVILGSPLDPRASAIGASSGLGIIGTNDGLVYAWELSSG----NKLGI 1239 (1329)
Q Consensus 1165 ~Sdd~t~~Dlr-a~~~~gH~n~~wRLALl~K~siI~Gs~ldpra~afs~SG~~gfaGT~DGlVYmWDLstG----~kL~t 1239 (1329)
.+.-.-.||+| ++.+.--.-.+-..- -|++++-|++.=.++||.||.|+|=.+-.- +|-=.
T Consensus 153 ~~r~v~iyDLRn~~~~~q~reS~lkyq--------------tR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkya 218 (323)
T KOG1036|consen 153 SDRKVLIYDLRNLDEPFQRRESSLKYQ--------------TRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYA 218 (323)
T ss_pred cCceEEEEEcccccchhhhccccceeE--------------EEEEEEecCCCceEEEeecceEEEEccCCchHHhhhcee
Confidence 98888889999 333110001111111 277888999999999999999999888777 56667
Q ss_pred eecccCc--------eEEEEEecCCCCceEEEecCCCCCCccccCCCCCCCCcEEEeeeCC
Q 000725 1240 LHHFKGG--------TVSCIATDDSGLQALAVAGDGPDGGRRQRDPRHGQNDHVRIWKMDP 1292 (1329)
Q Consensus 1240 L~~Heg~--------rVSCVA~dps~p~~~AsA~d~~d~~~r~~~~~~s~D~~VRiW~~~~ 1292 (1329)
+.||..- -|-.|++||- .+.+|+| +.||-|-+|+..+
T Consensus 219 FkCHr~~~~~~~~~yPVNai~Fhp~-~~tfaTg---------------GsDG~V~~Wd~~~ 263 (323)
T KOG1036|consen 219 FKCHRLSEKDTEIIYPVNAIAFHPI-HGTFATG---------------GSDGIVNIWDLFN 263 (323)
T ss_pred EEeeecccCCceEEEEeceeEeccc-cceEEec---------------CCCceEEEccCcc
Confidence 7888641 2778999977 5557887 5677777776544
No 152
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.03 E-value=1.4e-09 Score=125.38 Aligned_cols=203 Identities=14% Similarity=0.130 Sum_probs=159.0
Q ss_pred ccCCCCcEEEEEecCcceeeeEEEecc-cceeEEEEe-cCCeEEEecCCCeEEEEeccCcceEEEeeeeecCCCCcccce
Q 000725 985 HRLDENAVKIVKVKPGYVSVVAKLKTD-DCVQCILVC-EPKHLIAVGESGKLHLWEMNSSWSAQVEECIIPINDCIYPCI 1062 (1329)
Q Consensus 985 s~seDNtVKIv~V~~G~vsll~kL~~h-~sV~cIlVc-DpnhLVSaSdDGkL~IWDM~SgWsm~tee~Vi~~n~~v~p~I 1062 (1329)
++++.++||||+.+.-. +...|++| ..|.||--. ---||+|+++.|-|+|--..|+-...++ -++.++.|
T Consensus 96 sgG~~~~Vkiwdl~~kl--~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f--~~~sgqsv---- 167 (673)
T KOG4378|consen 96 SGGQSGCVKIWDLRAKL--IHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTF--TIDSGQSV---- 167 (673)
T ss_pred ccCcCceeeehhhHHHH--HhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccce--ecCCCCeE----
Confidence 99999999999999766 77889999 999999887 6679999999999999998887654443 45555532
Q ss_pred eEEEecCCC-CCeeEecCCCccEEEEEccccceeeee-ccCccceeE--ecccc-----ccccccCcceEECcchhhh-c
Q 000725 1063 VEMKRIPKC-APLVVGHNGFGEFGIWDISKRVLVSRF-SAARASIYQ--FFPIN-----LFSWQRNGSVSMDASLELT-N 1132 (1329)
Q Consensus 1063 ~elKrFpks-s~lIVTgSGDgtf~LWDIskg~llqsF-~ahs~sV~s--fsP~~-----s~S~d~~v~tfd~~s~d~~-l 1132 (1329)
-+-+|..+ -+++.+.|.+|++.|||+..+..+..| ++|+++--. |+|.. +--+|..|.+||+++-... +
T Consensus 168 -Rll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~ 246 (673)
T KOG4378|consen 168 -RLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDR 246 (673)
T ss_pred -EEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccce
Confidence 33255443 367889999999999999999885554 567776433 88887 5678999999999976655 5
Q ss_pred cccccccccCCCceeecCCCCccceEEEEeeccCccchhhccc-----ccccCCCCcceeEEEe------eeccceecCC
Q 000725 1133 TATTSLFSKHSEKSSFCPSVGEDSAIWLLVSTISDSDAQHNCM-----SRDCQKNPVRFWRLAL------LVKNRVILGS 1201 (1329)
Q Consensus 1133 eatv~~fSgdvn~VsF~P~sGeD~AiwLLVST~Sdd~t~~Dlr-----a~~~~gH~n~~wRLAL------l~K~siI~Gs 1201 (1329)
.+--++|+. |.|.| + |..|-+|+.-.-..+||+| ...-..|.+.+.|||. |.|.++..|+
T Consensus 247 l~y~~Plst----vaf~~----~-G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~tvltkssln~G~ 317 (673)
T KOG4378|consen 247 LTYSHPLST----VAFSE----C-GTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSPTVLTKSSLNSGD 317 (673)
T ss_pred eeecCCcce----eeecC----C-ceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeecceeeeccccccCc
Confidence 666788999 99998 6 8889999999999999999 4445677888888864 5556666776
Q ss_pred CCCC
Q 000725 1202 PLDP 1205 (1329)
Q Consensus 1202 ~ldp 1205 (1329)
---|
T Consensus 318 ~~~~ 321 (673)
T KOG4378|consen 318 NQQN 321 (673)
T ss_pred cCCC
Confidence 5443
No 153
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.02 E-value=2.5e-09 Score=120.55 Aligned_cols=197 Identities=15% Similarity=0.215 Sum_probs=147.1
Q ss_pred EEeccccccceEEEEEEeeeCCCCCCCCceeecccccccccccccccccc-cccceeeecC--CCcEEEEecCccCcccc
Q 000725 895 VSCGFLVDKKRTLFIYTVDIQEPRVGNPSCVGHTSVMLPFLKDNFGREIA-LERSCALFTP--DGQYLVLLDSMKTPYCR 971 (1329)
Q Consensus 895 VlCG~L~~~~r~Lf~Yki~i~~~~~~~p~~vg~t~~llp~~~~~~~~~~~-~ersglqFTP--DGQ~LvLlgsik~p~CR 971 (1329)
|+|+-..+..| .+||.++..-+-+..|..++|.+..-|..+ .+.- -|-.||.|+| .|.+|- --|
T Consensus 166 ~~~aswse~G~-V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t----~~ghk~EGy~LdWSp~~~g~Lls-------GDc- 232 (440)
T KOG0302|consen 166 VLCASWSENGR-VQVWDLAPHLNALSEPGLEVKDSEFRPLFT----FNGHKGEGYGLDWSPIKTGRLLS-------GDC- 232 (440)
T ss_pred ceeeeecccCc-EEEEEchhhhhhhcCccccccccccCceEE----ecccCccceeeeccccccccccc-------Ccc-
Confidence 45555666554 689999999999999999999865555433 3332 5789999999 444332 222
Q ss_pred CCCccccccccccccCCCCcEEEEEecCcceee-eEEEecc-cceeEEEEe--cCCeEEEecCCCeEEEEeccCcceEEE
Q 000725 972 EGRSDCLCSTCTSHRLDENAVKIVKVKPGYVSV-VAKLKTD-DCVQCILVC--EPKHLIAVGESGKLHLWEMNSSWSAQV 1047 (1329)
Q Consensus 972 ~~~~dC~Cs~C~~s~seDNtVKIv~V~~G~vsl-l~kL~~h-~sV~cIlVc--DpnhLVSaSdDGkL~IWDM~SgWsm~t 1047 (1329)
.+-|.+|++.+|.--+ -.-|.+| .+|-++.|+ +.+.++|||=||.|.|||..++=.-+|
T Consensus 233 -----------------~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~ 295 (440)
T KOG0302|consen 233 -----------------VKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAA 295 (440)
T ss_pred -----------------ccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccce
Confidence 3678999999986311 1247789 999999998 999999999999999999999733333
Q ss_pred eeeeecCCCCcccceeEEEecCCCCCeeEecCCCccEEEEEccc---cceeeeeccCccceeE--ecccc-----ccccc
Q 000725 1048 EECIIPINDCIYPCIVEMKRIPKCAPLVVGHNGFGEFGIWDISK---RVLVSRFSAARASIYQ--FFPIN-----LFSWQ 1117 (1329)
Q Consensus 1048 ee~Vi~~n~~v~p~I~elKrFpkss~lIVTgSGDgtf~LWDIsk---g~llqsF~ahs~sV~s--fsP~~-----s~S~d 1117 (1329)
..+ +-|..-|.-+ -++..-.+|++|+-||+++|||++. ++.+.+|.-|...|++ +.|-+ ..+-|
T Consensus 296 ~~~-----kAh~sDVNVI-SWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D 369 (440)
T KOG0302|consen 296 VST-----KAHNSDVNVI-SWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGED 369 (440)
T ss_pred eEe-----eccCCceeeE-EccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCC
Confidence 332 1244434445 7888888999999999999999865 5669999999999999 88877 44556
Q ss_pred cCcceEECcc
Q 000725 1118 RNGSVSMDAS 1127 (1329)
Q Consensus 1118 ~~v~tfd~~s 1127 (1329)
..|-+||++-
T Consensus 370 ~QitiWDlsv 379 (440)
T KOG0302|consen 370 NQITIWDLSV 379 (440)
T ss_pred CcEEEEEeec
Confidence 6777777653
No 154
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.02 E-value=7.8e-09 Score=124.15 Aligned_cols=375 Identities=13% Similarity=0.075 Sum_probs=244.9
Q ss_pred ceeeeeccc-ccceeeeeeccCCeEE-EEEEecc-----ccccceEEEEEEeeeCCCCCCCCceeecccccccccccccc
Q 000725 868 DLMGCYFFP-LPILSVLLSTTGDKIY-VCVSCGF-----LVDKKRTLFIYTVDIQEPRVGNPSCVGHTSVMLPFLKDNFG 940 (1329)
Q Consensus 868 ~l~g~y~Hp-mpVlsv~l~t~~~ei~-IcVlCG~-----L~~~~r~Lf~Yki~i~~~~~~~p~~vg~t~~llp~~~~~~~ 940 (1329)
|.+-.|-|| =+|.++-.+|.|+.+. +--.||. |+++.+.--+|++. +-..+.-+|.---||++....||.-
T Consensus 235 kil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah--~~sv~~~~fl~~epVl~ta~~DnSl 312 (910)
T KOG1539|consen 235 KILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAH--YGSVTGATFLPGEPVLVTAGADNSL 312 (910)
T ss_pred cEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccc--cCCcccceecCCCceEeeccCCCce
Confidence 345689998 9999999999999854 4445673 55666666666665 3344455666667888888888988
Q ss_pred cccccccceeeecCCC--cEEEE-ecCccCccccC----CCccccccccccccCCCCcEEEEEecCcce----eeeEEEe
Q 000725 941 REIALERSCALFTPDG--QYLVL-LDSMKTPYCRE----GRSDCLCSTCTSHRLDENAVKIVKVKPGYV----SVVAKLK 1009 (1329)
Q Consensus 941 ~~~~~ersglqFTPDG--Q~LvL-lgsik~p~CR~----~~~dC~Cs~C~~s~seDNtVKIv~V~~G~v----sll~kL~ 1009 (1329)
+...|+ |+|| ++|=. -|--+-|.|-. +-.- -++.++|+|+|.+++-.-.- +.++..+
T Consensus 313 k~~vfD------~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~------ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~ 380 (910)
T KOG1539|consen 313 KVWVFD------SGDGVPRLLRSRGGHSAPPSCIRFYGSQGHF------ILSAKQDRTLRSFSVISESQSQELGQLHNKK 380 (910)
T ss_pred eEEEee------CCCCcchheeeccCCCCCchheeeeccCcEE------EEecccCcchhhhhhhHHHHhHhhccccccc
Confidence 888887 5555 22221 01111111100 0000 01889999999888533221 1111111
Q ss_pred cc-------------cceeEEEEe------cCCeEEEecCCCeEEEEeccCcceEEEeeeeecCC--CCcccceeEEEec
Q 000725 1010 TD-------------DCVQCILVC------EPKHLIAVGESGKLHLWEMNSSWSAQVEECIIPIN--DCIYPCIVEMKRI 1068 (1329)
Q Consensus 1010 ~h-------------~sV~cIlVc------DpnhLVSaSdDGkL~IWDM~SgWsm~tee~Vi~~n--~~v~p~I~elKrF 1068 (1329)
+. +.|-...+- .-|.+..--++.+..-|++....+- +++..++ +-..-.+.++ .+
T Consensus 381 ~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G---~~~L~~~~~~~~~~~~~av-~v 456 (910)
T KOG1539|consen 381 RAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSG---RHVLDPKRFKKDDINATAV-CV 456 (910)
T ss_pred ccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccc---cEEecCccccccCcceEEE-EE
Confidence 11 222222222 2345555566777777776654331 2333222 0022335555 78
Q ss_pred CCCCCeeEecCCCccEEEEEccccceeeee---ccCccceeEecccc------ccccccCcceEECcchhhh----cc--
Q 000725 1069 PKCAPLVVGHNGFGEFGIWDISKRVLVSRF---SAARASIYQFFPIN------LFSWQRNGSVSMDASLELT----NT-- 1133 (1329)
Q Consensus 1069 pkss~lIVTgSGDgtf~LWDIskg~llqsF---~ahs~sV~sfsP~~------s~S~d~~v~tfd~~s~d~~----le-- 1133 (1329)
..|++.++.|..-|+|.++.+++|....+| .+|...|..+.-|+ ++..||.+..|+....... ++
T Consensus 457 s~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~ 536 (910)
T KOG1539|consen 457 SFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSS 536 (910)
T ss_pred eccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCC
Confidence 999999999999999999999999999999 69999999988887 7899999999999888755 22
Q ss_pred ccccccccCCCceeecCCCCccceEEEEeeccCccchhhccc----ccccCCCCcceeEEEeeeccceecCCCCCCCcee
Q 000725 1134 ATTSLFSKHSEKSSFCPSVGEDSAIWLLVSTISDSDAQHNCM----SRDCQKNPVRFWRLALLVKNRVILGSPLDPRASA 1209 (1329)
Q Consensus 1134 atv~~fSgdvn~VsF~P~sGeD~AiwLLVST~Sdd~t~~Dlr----a~~~~gH~n~~wRLALl~K~siI~Gs~ldpra~a 1209 (1329)
++.+-....++ =+| +...+-.+..+|.. ..+|.||.++.-- .+
T Consensus 537 ~~~iv~hr~s~----------l~a----~~~ddf~I~vvD~~t~kvvR~f~gh~nritd-------------------~~ 583 (910)
T KOG1539|consen 537 ITGIVYHRVSD----------LLA----IALDDFSIRVVDVVTRKVVREFWGHGNRITD-------------------MT 583 (910)
T ss_pred cceeeeeehhh----------hhh----hhcCceeEEEEEchhhhhhHHhhccccceee-------------------eE
Confidence 22222222111 111 11222233446766 8889999998766 67
Q ss_pred eecCCCeEEeecCCCeEEEEEccccceeeeeecccCceEEEEEecCCCCceEEEecCCCCCCccccCCCCCCC-------
Q 000725 1210 IGASSGLGIIGTNDGLVYAWELSSGNKLGILHHFKGGTVSCIATDDSGLQALAVAGDGPDGGRRQRDPRHGQN------- 1282 (1329)
Q Consensus 1210 fs~SG~~gfaGT~DGlVYmWDLstG~kL~tL~~Heg~rVSCVA~dps~p~~~AsA~d~~d~~~r~~~~~~s~D------- 1282 (1329)
||+.|+.+++.+.|++|.+||+.||..+..+.- .. ..+.+.++|++.= +|++- ...-++-+|+-++=-.
T Consensus 584 FS~DgrWlisasmD~tIr~wDlpt~~lID~~~v-d~-~~~sls~SPngD~-LAT~H-vd~~gIylWsNkslF~~vs~r~~ 659 (910)
T KOG1539|consen 584 FSPDGRWLISASMDSTIRTWDLPTGTLIDGLLV-DS-PCTSLSFSPNGDF-LATVH-VDQNGIYLWSNKSLFKSVSTRAI 659 (910)
T ss_pred eCCCCcEEEEeecCCcEEEEeccCcceeeeEec-CC-cceeeEECCCCCE-EEEEE-ecCceEEEEEchhHheecccccc
Confidence 999999999999999999999999999999864 34 4788999998876 88874 3346777887542111
Q ss_pred --CcEEEeeeCCCcceee
Q 000725 1283 --DHVRIWKMDPNLGCVR 1298 (1329)
Q Consensus 1283 --~~VRiW~~~~~~~~~~ 1298 (1329)
+-+-.|.|-|. -|.+
T Consensus 660 ~~~~~~~~v~lPs-t~~~ 676 (910)
T KOG1539|consen 660 PADYVPSWVMLPS-TCDE 676 (910)
T ss_pred CcccccceeecCc-cccc
Confidence 33457888888 4544
No 155
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.02 E-value=1.7e-09 Score=124.63 Aligned_cols=286 Identities=16% Similarity=0.221 Sum_probs=194.5
Q ss_pred hcchhhhhhcccCccceeeeecccccceeeeeeccCCeEEEEEEeccccccceEEEEEEeeeCCCCCCCCceeecccccc
Q 000725 853 LQKNVECINELAGTFDLMGCYFFPLPILSVLLSTTGDKIYVCVSCGFLVDKKRTLFIYTVDIQEPRVGNPSCVGHTSVML 932 (1329)
Q Consensus 853 ~~~~~~~~n~l~~~~~l~g~y~HpmpVlsv~l~t~~~ei~IcVlCG~L~~~~r~Lf~Yki~i~~~~~~~p~~vg~t~~ll 932 (1329)
.-|..+-+|.|++- |+ |+-+.+..-..-+|- || .+-.=|+- |..|-.-.|- . -|
T Consensus 406 IPrharq~~tL~HG-Ev---------VcAvtIS~~trhVyT---gG-----kgcVKVWd--is~pg~k~Pv--s----qL 459 (705)
T KOG0639|consen 406 IPRHARQINTLAHG-EV---------VCAVTISNPTRHVYT---GG-----KGCVKVWD--ISQPGNKSPV--S----QL 459 (705)
T ss_pred CCchHHhhhhhccC-cE---------EEEEEecCCcceeEe---cC-----CCeEEEee--ccCCCCCCcc--c----cc
Confidence 36778888988753 22 333444333232332 22 23344554 4455333443 3 34
Q ss_pred ccc-ccccccccccccceeeecCCCcEEEEecCccCccccCCCccccccccccccCCCCcEEEEEecCcceeeeEEEecc
Q 000725 933 PFL-KDNFGREIALERSCALFTPDGQYLVLLDSMKTPYCREGRSDCLCSTCTSHRLDENAVKIVKVKPGYVSVVAKLKTD 1011 (1329)
Q Consensus 933 p~~-~~~~~~~~~~ersglqFTPDGQ~LvLlgsik~p~CR~~~~dC~Cs~C~~s~seDNtVKIv~V~~G~vsll~kL~~h 1011 (1329)
+-+ .+||.| ...+.|||+.|+ .+++-.+|-|||+++-..-+...|..-
T Consensus 460 dcl~rdnyiR-------SckL~pdgrtLi------------------------vGGeastlsiWDLAapTprikaeltss 508 (705)
T KOG0639|consen 460 DCLNRDNYIR-------SCKLLPDGRTLI------------------------VGGEASTLSIWDLAAPTPRIKAELTSS 508 (705)
T ss_pred cccCccccee-------eeEecCCCceEE------------------------eccccceeeeeeccCCCcchhhhcCCc
Confidence 444 366654 346789999999 999999999999998663333444333
Q ss_pred -cceeEEEEe-cCCeEEEecCCCeEEEEeccCcceEEEeeeeecCCCCcccceeEEEecCCCCCeeEecCCCccEEEEEc
Q 000725 1012 -DCVQCILVC-EPKHLIAVGESGKLHLWEMNSSWSAQVEECIIPINDCIYPCIVEMKRIPKCAPLVVGHNGFGEFGIWDI 1089 (1329)
Q Consensus 1012 -~sV~cIlVc-DpnhLVSaSdDGkL~IWDM~SgWsm~tee~Vi~~n~~v~p~I~elKrFpkss~lIVTgSGDgtf~LWDI 1089 (1329)
..-..+.++ |.+.+.|+--||.|.|||+.--..++.+- ||.-..-++ -+.+++..|-||+-|-++|-||+
T Consensus 509 apaCyALa~spDakvcFsccsdGnI~vwDLhnq~~Vrqfq-------GhtDGascI-dis~dGtklWTGGlDntvRcWDl 580 (705)
T KOG0639|consen 509 APACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQ-------GHTDGASCI-DISKDGTKLWTGGLDNTVRCWDL 580 (705)
T ss_pred chhhhhhhcCCccceeeeeccCCcEEEEEcccceeeeccc-------CCCCCceeE-EecCCCceeecCCCccceeehhh
Confidence 556667778 99999999999999999999999999888 988888888 88999999999999999999999
Q ss_pred cccceeeeeccCccceeE--ecccc----ccccccCcceEECcchhhh-ccccccccccCCCceeecCCCCccceEEEEe
Q 000725 1090 SKRVLVSRFSAARASIYQ--FFPIN----LFSWQRNGSVSMDASLELT-NTATTSLFSKHSEKSSFCPSVGEDSAIWLLV 1162 (1329)
Q Consensus 1090 skg~llqsF~ahs~sV~s--fsP~~----s~S~d~~v~tfd~~s~d~~-leatv~~fSgdvn~VsF~P~sGeD~AiwLLV 1162 (1329)
+.|..++.. ..+.-||+ .+|.+ .+--.+.+-+..+..-++. +..+-.-|=. ++|.+ +|+|+..
T Consensus 581 regrqlqqh-dF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyqlhlheScVLS----lKFa~-----cGkwfvS 650 (705)
T KOG0639|consen 581 REGRQLQQH-DFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQLHLHESCVLS----LKFAY-----CGKWFVS 650 (705)
T ss_pred hhhhhhhhh-hhhhhheecccCCCccceeeecccCcEEEEecCCccceeecccccEEEE----EEecc-----cCceeee
Confidence 999887653 34578888 88887 2222334455555666665 3333333333 88998 6889765
Q ss_pred eccCccchhhccc--ccccCCCCcceeEEEeeeccceecCCCCCCCceeeecCCCeEEeecCCCeEEEEEc
Q 000725 1163 STISDSDAQHNCM--SRDCQKNPVRFWRLALLVKNRVILGSPLDPRASAIGASSGLGIIGTNDGLVYAWEL 1231 (1329)
Q Consensus 1163 ST~Sdd~t~~Dlr--a~~~~gH~n~~wRLALl~K~siI~Gs~ldpra~afs~SG~~gfaGT~DGlVYmWDL 1231 (1329)
...++..-.|-.- ++-|+. |++-=+ .+|+++.+.+|+++|+-|+.--++++
T Consensus 651 tGkDnlLnawrtPyGasiFqs------------kE~SsV------lsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 651 TGKDNLLNAWRTPYGASIFQS------------KESSSV------LSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred cCchhhhhhccCccccceeec------------cccCcc------eeeeeccCceEEEecCCCcceEEEEE
Confidence 5555555555433 332221 221111 23999999999999999987666664
No 156
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.01 E-value=1.8e-08 Score=119.24 Aligned_cols=225 Identities=15% Similarity=0.132 Sum_probs=169.3
Q ss_pred cceeEEEEe-cCCeEEEecCCCeEEEEeccCcceEEEeeeeecCCCCcccceeEEEecCCCCCeeEecCCCccEEEEEcc
Q 000725 1012 DCVQCILVC-EPKHLIAVGESGKLHLWEMNSSWSAQVEECIIPINDCIYPCIVEMKRIPKCAPLVVGHNGFGEFGIWDIS 1090 (1329)
Q Consensus 1012 ~sV~cIlVc-DpnhLVSaSdDGkL~IWDM~SgWsm~tee~Vi~~n~~v~p~I~elKrFpkss~lIVTgSGDgtf~LWDIs 1090 (1329)
..|.|+++. +.+.|+.+-.||.|-||....+|........ +.|.-+-+..+.. +..+-+-+++|+++=||+.
T Consensus 26 s~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g-~~drsIE~L~W~e------~~RLFS~g~sg~i~EwDl~ 98 (691)
T KOG2048|consen 26 SEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHG-PEDRSIESLAWAE------GGRLFSSGLSGSITEWDLH 98 (691)
T ss_pred cceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEec-CCCCceeeEEEcc------CCeEEeecCCceEEEEecc
Confidence 568999999 8899999999999999999999988777654 6666555555553 7888899999999999999
Q ss_pred ccceeeeeccCccceeE--ecccc----ccccccCcceEECcchhhh----ccccccccccCCCceeecCCCCccceEEE
Q 000725 1091 KRVLVSRFSAARASIYQ--FFPIN----LFSWQRNGSVSMDASLELT----NTATTSLFSKHSEKSSFCPSVGEDSAIWL 1160 (1329)
Q Consensus 1091 kg~llqsF~ahs~sV~s--fsP~~----s~S~d~~v~tfd~~s~d~~----leatv~~fSgdvn~VsF~P~sGeD~AiwL 1160 (1329)
++...-....-++.|++ ++|.+ -+.-||.+..|+.+....+ +..-+..+- +++|.| + +.-|
T Consensus 99 ~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvL----slsw~~----~-~~~i 169 (691)
T KOG2048|consen 99 TLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVL----SLSWNP----T-GTKI 169 (691)
T ss_pred cCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEE----EEEecC----C-ccEE
Confidence 99999999999999999 88887 3446665555555555544 221123333 389999 5 6667
Q ss_pred EeeccCccchhhcccccccCCCCccee--EEEeeec-cceecCCCCCCCceeeecCCCeEEeecCCCeEEEEEcccccee
Q 000725 1161 LVSTISDSDAQHNCMSRDCQKNPVRFW--RLALLVK-NRVILGSPLDPRASAIGASSGLGIIGTNDGLVYAWELSSGNKL 1237 (1329)
Q Consensus 1161 LVST~Sdd~t~~Dlra~~~~gH~n~~w--RLALl~K-~siI~Gs~ldpra~afs~SG~~gfaGT~DGlVYmWDLstG~kL 1237 (1329)
..|+.+-.+++||....+ .+-.- ++.-+-| +.+|.=+ ......+.+++|..-|.|.+||-..|+-+
T Consensus 170 ~~Gs~Dg~Iriwd~~~~~----t~~~~~~~~d~l~k~~~~iVWS-------v~~Lrd~tI~sgDS~G~V~FWd~~~gTLi 238 (691)
T KOG2048|consen 170 AGGSIDGVIRIWDVKSGQ----TLHIITMQLDRLSKREPTIVWS-------VLFLRDSTIASGDSAGTVTFWDSIFGTLI 238 (691)
T ss_pred EecccCceEEEEEcCCCc----eEEEeeecccccccCCceEEEE-------EEEeecCcEEEecCCceEEEEcccCcchh
Confidence 788888889999988443 11100 0111122 2222222 23447889999999999999999999999
Q ss_pred eeeecccCceEEEEEecCCCCceEEEec
Q 000725 1238 GILHHFKGGTVSCIATDDSGLQALAVAG 1265 (1329)
Q Consensus 1238 ~tL~~Heg~rVSCVA~dps~p~~~AsA~ 1265 (1329)
+...+|.. -|-|+|++|..+. +.+||
T Consensus 239 qS~~~h~a-dVl~Lav~~~~d~-vfsaG 264 (691)
T KOG2048|consen 239 QSHSCHDA-DVLALAVADNEDR-VFSAG 264 (691)
T ss_pred hhhhhhhc-ceeEEEEcCCCCe-EEEcc
Confidence 99999999 8999999988887 66663
No 157
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.00 E-value=6e-09 Score=115.10 Aligned_cols=175 Identities=18% Similarity=0.250 Sum_probs=129.6
Q ss_pred eeEEEE--ecCCeEEEecCCCeEEEEeccCcceEEEeeee-------e-cCCCCcccceeEEEecCCCCCeeEecCCCcc
Q 000725 1014 VQCILV--CEPKHLIAVGESGKLHLWEMNSSWSAQVEECI-------I-PINDCIYPCIVEMKRIPKCAPLVVGHNGFGE 1083 (1329)
Q Consensus 1014 V~cIlV--cDpnhLVSaSdDGkL~IWDM~SgWsm~tee~V-------i-~~n~~v~p~I~elKrFpkss~lIVTgSGDgt 1083 (1329)
|..+-| ++.+|++|++-||.+-|||+.-.---.-.++| + +.-.+|-=.|-.+-=||-+.-...++|+|.|
T Consensus 46 vNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDht 125 (397)
T KOG4283|consen 46 VNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHT 125 (397)
T ss_pred cceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecccccce
Confidence 444433 48999999999999999997654322222222 1 3333454455555578999999999999999
Q ss_pred EEEEEccccceeeeeccCccceeEeccccccccccCcceEECcchhhhccccccccccCCCceeecCCCCccceEEEEee
Q 000725 1084 FGIWDISKRVLVSRFSAARASIYQFFPINLFSWQRNGSVSMDASLELTNTATTSLFSKHSEKSSFCPSVGEDSAIWLLVS 1163 (1329)
Q Consensus 1084 f~LWDIskg~llqsF~ahs~sV~sfsP~~s~S~d~~v~tfd~~s~d~~leatv~~fSgdvn~VsF~P~sGeD~AiwLLVS 1163 (1329)
+++||..+-|-.-.|.... .+-+..++| +|
T Consensus 126 lKVWDtnTlQ~a~~F~me~---------------------------------------~VYshamSp-----~a------ 155 (397)
T KOG4283|consen 126 LKVWDTNTLQEAVDFKMEG---------------------------------------KVYSHAMSP-----MA------ 155 (397)
T ss_pred EEEeecccceeeEEeecCc---------------------------------------eeehhhcCh-----hh------
Confidence 9999999988777776321 111233444 12
Q ss_pred ccCccchhhcccccccCCCCcceeEEEeeeccceecCCCCCCCceeeecCCCeEEeecCCCeEEEEEccccceeeeeecc
Q 000725 1164 TISDSDAQHNCMSRDCQKNPVRFWRLALLVKNRVILGSPLDPRASAIGASSGLGIIGTNDGLVYAWELSSGNKLGILHHF 1243 (1329)
Q Consensus 1164 T~Sdd~t~~Dlra~~~~gH~n~~wRLALl~K~siI~Gs~ldpra~afs~SG~~gfaGT~DGlVYmWDLstG~kL~tL~~H 1243 (1329)
.+--++++||.|-.|.+-|+.+|..-++|.||
T Consensus 156 ------------------------------------------------~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGH 187 (397)
T KOG4283|consen 156 ------------------------------------------------MSHCLIAAGTRDVQVRLCDIASGSFSHTLSGH 187 (397)
T ss_pred ------------------------------------------------hcceEEEEecCCCcEEEEeccCCcceeeeccc
Confidence 11124678999999999999999999999999
Q ss_pred cCceEEEEEecCCCCceEEEecCCCCCCccccCCCCCCCCcEEEeeeCCCcceee---cCCC
Q 000725 1244 KGGTVSCIATDDSGLQALAVAGDGPDGGRRQRDPRHGQNDHVRIWKMDPNLGCVR---NSNG 1302 (1329)
Q Consensus 1244 eg~rVSCVA~dps~p~~~AsA~d~~d~~~r~~~~~~s~D~~VRiW~~~~~~~~~~---~~~~ 1302 (1329)
.+ -|.+|.-+|+--=++|+| |.|+.||+|+....-||.| ++|+
T Consensus 188 r~-~vlaV~Wsp~~e~vLatg---------------saDg~irlWDiRrasgcf~~lD~hn~ 233 (397)
T KOG4283|consen 188 RD-GVLAVEWSPSSEWVLATG---------------SADGAIRLWDIRRASGCFRVLDQHNT 233 (397)
T ss_pred cC-ceEEEEeccCceeEEEec---------------CCCceEEEEEeecccceeEEeecccC
Confidence 99 699999998888778877 8899999999999888876 4555
No 158
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.00 E-value=1.2e-08 Score=114.60 Aligned_cols=264 Identities=11% Similarity=0.020 Sum_probs=166.7
Q ss_pred cccccccccccccccccceeeecCCCcEEEEecCccCccccCCCccccccccccccCCCCcEEEEEecCcceeeeEEEec
Q 000725 931 MLPFLKDNFGREIALERSCALFTPDGQYLVLLDSMKTPYCREGRSDCLCSTCTSHRLDENAVKIVKVKPGYVSVVAKLKT 1010 (1329)
Q Consensus 931 llp~~~~~~~~~~~~ersglqFTPDGQ~LvLlgsik~p~CR~~~~dC~Cs~C~~s~seDNtVKIv~V~~G~vsll~kL~~ 1010 (1329)
.++.+-+.|.-++....+|..=-= +..|+++-.- + .+..+..|.||+...++ ...|..
T Consensus 144 ~~r~~ah~~~d~i~~~ltg~~g~f-~~ria~v~~~--~----------------~~~~~~~i~i~d~dg~~---~~~lt~ 201 (429)
T PRK01742 144 WLRYGAHTVSDEVFEKLTAIRGAF-RTRIAYVVQK--N----------------GGSQPYEVRVADYDGFN---QFIVNR 201 (429)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCcc-CCEEEEEEEE--c----------------CCCceEEEEEECCCCCC---ceEecc
Confidence 566666777666665444422100 2345543221 1 12345789999998766 355667
Q ss_pred c-cceeEEEEe-cCCeEEEecCC---CeEEEEeccCcceEEEeeeeecCCCCcccceeEEEecCCCCCeeEec-CCCccE
Q 000725 1011 D-DCVQCILVC-EPKHLIAVGES---GKLHLWEMNSSWSAQVEECIIPINDCIYPCIVEMKRIPKCAPLVVGH-NGFGEF 1084 (1329)
Q Consensus 1011 h-~sV~cIlVc-DpnhLVSaSdD---GkL~IWDM~SgWsm~tee~Vi~~n~~v~p~I~elKrFpkss~lIVTg-SGDgtf 1084 (1329)
| ..+..+.|+ |.++|+.++.+ .+|++||+.++-...... ..++. ... +|.+++..|+.. +.+|..
T Consensus 202 ~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~-----~~g~~---~~~-~wSPDG~~La~~~~~~g~~ 272 (429)
T PRK01742 202 SSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVAS-----FRGHN---GAP-AFSPDGSRLAFASSKDGVL 272 (429)
T ss_pred CCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEec-----CCCcc---Cce-eECCCCCEEEEEEecCCcE
Confidence 7 679999999 99999988754 479999998874332221 12221 135 888888877654 568877
Q ss_pred EEE--EccccceeeeeccCccceeE--ecccc---ccc--cccCcceEECcc--hhhhccccccccccCCCceeecCCCC
Q 000725 1085 GIW--DISKRVLVSRFSAARASIYQ--FFPIN---LFS--WQRNGSVSMDAS--LELTNTATTSLFSKHSEKSSFCPSVG 1153 (1329)
Q Consensus 1085 ~LW--DIskg~llqsF~ahs~sV~s--fsP~~---s~S--~d~~v~tfd~~s--~d~~leatv~~fSgdvn~VsF~P~sG 1153 (1329)
.|| |+..+++ ..+..+...+.+ |+|++ .|. -++..++|.... ....+..+ .+ ....|+|
T Consensus 273 ~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~----~~--~~~~~Sp--- 342 (429)
T PRK01742 273 NIYVMGANGGTP-SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGG----RG--YSAQISA--- 342 (429)
T ss_pred EEEEEECCCCCe-EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecC----CC--CCccCCC---
Confidence 766 6666665 445555555544 99998 222 356677777543 22222211 11 2367898
Q ss_pred ccceEEEEeeccCccchhhcccccccCCCCcceeEEEeeeccceecCCCCCCCceeeecCCCeEEeecCCCeEEEEEcc-
Q 000725 1154 EDSAIWLLVSTISDSDAQHNCMSRDCQKNPVRFWRLALLVKNRVILGSPLDPRASAIGASSGLGIIGTNDGLVYAWELS- 1232 (1329)
Q Consensus 1154 eD~AiwLLVST~Sdd~t~~Dlra~~~~gH~n~~wRLALl~K~siI~Gs~ldpra~afs~SG~~gfaGT~DGlVYmWDLs- 1232 (1329)
| +.+|++.+. +....||+.... ++ .+.+. .+-...+++++|++++.++.||.+++|++.
T Consensus 343 -D-G~~ia~~~~-~~i~~~Dl~~g~--------~~--~lt~~-------~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~ 402 (429)
T PRK01742 343 -D-GKTLVMING-DNVVKQDLTSGS--------TE--VLSST-------FLDESPSISPNGIMIIYSSTQGLGKVLQLVS 402 (429)
T ss_pred -C-CCEEEEEcC-CCEEEEECCCCC--------eE--EecCC-------CCCCCceECCCCCEEEEEEcCCCceEEEEEE
Confidence 6 677766655 334447765332 12 11111 122457899999999999999999999974
Q ss_pred -ccceeeeeecccCceEEEEEecCC
Q 000725 1233 -SGNKLGILHHFKGGTVSCIATDDS 1256 (1329)
Q Consensus 1233 -tG~kL~tL~~Heg~rVSCVA~dps 1256 (1329)
+|+.+.+|.+|++ .|..++.+|-
T Consensus 403 ~~G~~~~~l~~~~g-~~~~p~wsp~ 426 (429)
T PRK01742 403 ADGRFKARLPGSDG-QVKFPAWSPY 426 (429)
T ss_pred CCCCceEEccCCCC-CCCCcccCCC
Confidence 7999999999998 7888877753
No 159
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=98.99 E-value=1.6e-08 Score=117.11 Aligned_cols=234 Identities=14% Similarity=0.147 Sum_probs=159.4
Q ss_pred ceeeecCCCcEEEEecCccCccccCCCccccccccccccCCCCcEEEEEecCcceeeeEEEecc-cceeEEEEecCCeEE
Q 000725 948 SCALFTPDGQYLVLLDSMKTPYCREGRSDCLCSTCTSHRLDENAVKIVKVKPGYVSVVAKLKTD-DCVQCILVCEPKHLI 1026 (1329)
Q Consensus 948 sglqFTPDGQ~LvLlgsik~p~CR~~~~dC~Cs~C~~s~seDNtVKIv~V~~G~vsll~kL~~h-~sV~cIlVcDpnhLV 1026 (1329)
.+++|-++|+-+- +--++.|-||++-+-+ ....-.+| ++|-|+.+--.-.|+
T Consensus 250 l~v~F~engdviT-------------------------gDS~G~i~Iw~~~~~~--~~k~~~aH~ggv~~L~~lr~Gtll 302 (626)
T KOG2106|consen 250 LCVTFLENGDVIT-------------------------GDSGGNILIWSKGTNR--ISKQVHAHDGGVFSLCMLRDGTLL 302 (626)
T ss_pred EEEEEcCCCCEEe-------------------------ecCCceEEEEeCCCce--EEeEeeecCCceEEEEEecCccEe
Confidence 6899999999775 5667899999996555 33344499 999999999666788
Q ss_pred EecCCCeEEEEeccC------------cceEEEee------------eee---------cCCCCcccceeEEEecCCCCC
Q 000725 1027 AVGESGKLHLWEMNS------------SWSAQVEE------------CII---------PINDCIYPCIVEMKRIPKCAP 1073 (1329)
Q Consensus 1027 SaSdDGkL~IWDM~S------------gWsm~tee------------~Vi---------~~n~~v~p~I~elKrFpkss~ 1073 (1329)
|+|.||+|+.||=+= |-....++ +|. +--.+|+-..+.+ +..++..
T Consensus 303 SGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgl-a~hps~~ 381 (626)
T KOG2106|consen 303 SGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGL-ATHPSKN 381 (626)
T ss_pred ecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeE-EcCCChh
Confidence 899999999999111 11111111 111 1111244444556 8889999
Q ss_pred eeEecCCCccEEEEEccccce--eeeeccCccceeE--ecccc---ccccccCcceEECcchhhh-ccccccccccCCCc
Q 000725 1074 LVVGHNGFGEFGIWDISKRVL--VSRFSAARASIYQ--FFPIN---LFSWQRNGSVSMDASLELT-NTATTSLFSKHSEK 1145 (1329)
Q Consensus 1074 lIVTgSGDgtf~LWDIskg~l--lqsF~ahs~sV~s--fsP~~---s~S~d~~v~tfd~~s~d~~-leatv~~fSgdvn~ 1145 (1329)
|.+|++-|+.++||+ +.++ ..-|. +++-+ |-|.+ .++.-|.-.+++..+-+.. .-.++.+.+-
T Consensus 382 q~~T~gqdk~v~lW~--~~k~~wt~~~~---d~~~~~~fhpsg~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~---- 452 (626)
T KOG2106|consen 382 QLLTCGQDKHVRLWN--DHKLEWTKIIE---DPAECADFHPSGVVAVGTATGRWFVLDTETQDLVTIHTDNEQLSV---- 452 (626)
T ss_pred heeeccCcceEEEcc--CCceeEEEEec---CceeEeeccCcceEEEeeccceEEEEecccceeEEEEecCCceEE----
Confidence 999999999999999 4444 34444 33333 77776 3444443344444442222 1123555555
Q ss_pred eeecCCCCccceEEEEeeccCccchhhcccccccCCCCcceeEEEeeeccceecCCCCCCCceeeecCCCeEEeecCCCe
Q 000725 1146 SSFCPSVGEDSAIWLLVSTISDSDAQHNCMSRDCQKNPVRFWRLALLVKNRVILGSPLDPRASAIGASSGLGIIGTNDGL 1225 (1329)
Q Consensus 1146 VsF~P~sGeD~AiwLLVST~Sdd~t~~Dlra~~~~gH~n~~wRLALl~K~siI~Gs~ldpra~afs~SG~~gfaGT~DGl 1225 (1329)
|+|.| | |..|.|+|-+..+++|-+.++- ..|.+=.++-|++| +..+++.++.|+.+-|.|+-
T Consensus 453 v~ysp----~-G~~lAvgs~d~~iyiy~Vs~~g-----------~~y~r~~k~~gs~i--thLDwS~Ds~~~~~~S~d~e 514 (626)
T KOG2106|consen 453 VRYSP----D-GAFLAVGSHDNHIYIYRVSANG-----------RKYSRVGKCSGSPI--THLDWSSDSQFLVSNSGDYE 514 (626)
T ss_pred EEEcC----C-CCEEEEecCCCeEEEEEECCCC-----------cEEEEeeeecCcee--EEeeecCCCceEEeccCceE
Confidence 99999 7 8899999999999997665443 13445556667654 67899999999999999999
Q ss_pred EEEEEccccce
Q 000725 1226 VYAWELSSGNK 1236 (1329)
Q Consensus 1226 VYmWDLstG~k 1236 (1329)
|-.|.-+..+-
T Consensus 515 iLyW~~~~~~~ 525 (626)
T KOG2106|consen 515 ILYWKPSECKQ 525 (626)
T ss_pred EEEEccccCcc
Confidence 99996554443
No 160
>KOG4328 consensus WD40 protein [Function unknown]
Probab=98.97 E-value=2.4e-08 Score=114.58 Aligned_cols=267 Identities=15% Similarity=0.136 Sum_probs=193.7
Q ss_pred cceeeecCCCc-EEEEecCccCccccCCCccccccccccccCCCCcEEEEEec-Ccce-eeeEEEecc-cceeEEEEe--
Q 000725 947 RSCALFTPDGQ-YLVLLDSMKTPYCREGRSDCLCSTCTSHRLDENAVKIVKVK-PGYV-SVVAKLKTD-DCVQCILVC-- 1020 (1329)
Q Consensus 947 rsglqFTPDGQ-~LvLlgsik~p~CR~~~~dC~Cs~C~~s~seDNtVKIv~V~-~G~v-sll~kL~~h-~sV~cIlVc-- 1020 (1329)
.++++|-|--. .||+ .|..-+.|=+|++. .+-+ +=+..|..| ..|.||-+.
T Consensus 189 it~l~fHPt~~~~lva-----------------------~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~ 245 (498)
T KOG4328|consen 189 ITSLAFHPTENRKLVA-----------------------VGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPA 245 (498)
T ss_pred eEEEEecccCcceEEE-----------------------EccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCC
Confidence 46899988766 4551 77888999999993 1112 345677888 999999999
Q ss_pred cCCeEEEecCCCeEEEEeccCcceEEEeeeeecCCCCcccceeEEEecCCCCCeeEecCCCccEEEEEccccce-eeeec
Q 000725 1021 EPKHLIAVGESGKLHLWEMNSSWSAQVEECIIPINDCIYPCIVEMKRIPKCAPLVVGHNGFGEFGIWDISKRVL-VSRFS 1099 (1329)
Q Consensus 1021 DpnhLVSaSdDGkL~IWDM~SgWsm~tee~Vi~~n~~v~p~I~elKrFpkss~lIVTgSGDgtf~LWDIskg~l-lqsF~ 1099 (1329)
+..++.|+|-||+|.+=|++.+-..-.+. ++++ ..++..=-|+.....|+.|+..|.|.+||...+.. .--..
T Consensus 246 n~s~i~ssSyDGtiR~~D~~~~i~e~v~s---~~~d---~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~ 319 (498)
T KOG4328|consen 246 NTSQIYSSSYDGTIRLQDFEGNISEEVLS---LDTD---NIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLR 319 (498)
T ss_pred ChhheeeeccCceeeeeeecchhhHHHhh---cCcc---ceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhh
Confidence 99999999999999999987743322111 2111 12222226788888888888888999999998877 66666
Q ss_pred cCccceeE--ecccc-----ccccccCcceEECcchhhhc------cccccccccCCCceeecCCCCccceEEEEeeccC
Q 000725 1100 AARASIYQ--FFPIN-----LFSWQRNGSVSMDASLELTN------TATTSLFSKHSEKSSFCPSVGEDSAIWLLVSTIS 1166 (1329)
Q Consensus 1100 ahs~sV~s--fsP~~-----s~S~d~~v~tfd~~s~d~~l------eatv~~fSgdvn~VsF~P~sGeD~AiwLLVST~S 1166 (1329)
-|..-|.+ ++|.- ++|.|++.++||.+..-.+. ..|.. -+++++|+| +-|. ||....+
T Consensus 320 lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~Hrr----sV~sAyFSP----s~gt-l~TT~~D 390 (498)
T KOG4328|consen 320 LHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRR----SVNSAYFSP----SGGT-LLTTCQD 390 (498)
T ss_pred hhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccc----eeeeeEEcC----CCCc-eEeeccC
Confidence 77777877 88887 89999999999999877662 24444 445599999 4254 8888888
Q ss_pred ccchhhccc---ccc---cCC-CCcceeEEEeeeccceecCCCCCCCceeeecCCCeEEeecCCCeEEEEEccccceeee
Q 000725 1167 DSDAQHNCM---SRD---CQK-NPVRFWRLALLVKNRVILGSPLDPRASAIGASSGLGIIGTNDGLVYAWELSSGNKLGI 1239 (1329)
Q Consensus 1167 dd~t~~Dlr---a~~---~~g-H~n~~wRLALl~K~siI~Gs~ldpra~afs~SG~~gfaGT~DGlVYmWDLstG~kL~t 1239 (1329)
+.++.||-. ++. +.+ |.+.. |--|-|=-+++.|+..++++|-.-..|-+.|-.-|+.+..
T Consensus 391 ~~IRv~dss~~sa~~~p~~~I~Hn~~t-------------~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~e 457 (498)
T KOG4328|consen 391 NEIRVFDSSCISAKDEPLGTIPHNNRT-------------GRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCE 457 (498)
T ss_pred CceEEeecccccccCCccceeeccCcc-------------cccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeee
Confidence 888889984 221 112 22222 2223334467777999999999999999999999999999
Q ss_pred eecccCceEEEE-EecCCCCceEEEec
Q 000725 1240 LHHFKGGTVSCI-ATDDSGLQALAVAG 1265 (1329)
Q Consensus 1240 L~~Heg~rVSCV-A~dps~p~~~AsA~ 1265 (1329)
||.=+--.|.|| +.||.+.. +|.|+
T Consensus 458 l~~P~~~tI~~vn~~HP~~~~-~~aG~ 483 (498)
T KOG4328|consen 458 LHDPESSTIPSVNEFHPMRDT-LAAGG 483 (498)
T ss_pred ccCccccccccceeecccccc-eeccC
Confidence 988776456664 78987764 66663
No 161
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=98.95 E-value=3.3e-09 Score=122.72 Aligned_cols=209 Identities=12% Similarity=0.107 Sum_probs=143.3
Q ss_pred CcccceeEEEecCCCCCeeEecCCCccEEEEEccccce-------eeeeccCccceeEecccc------ccccccCcceE
Q 000725 1057 CIYPCIVEMKRIPKCAPLVVGHNGFGEFGIWDISKRVL-------VSRFSAARASIYQFFPIN------LFSWQRNGSVS 1123 (1329)
Q Consensus 1057 ~v~p~I~elKrFpkss~lIVTgSGDgtf~LWDIskg~l-------lqsF~ahs~sV~sfsP~~------s~S~d~~v~tf 1123 (1329)
.++..|..| +|-+++-.++|||.|-++++||...=.. |+-.+.|.+-+.+|+|++ +++-| .+++
T Consensus 165 hgtk~Vsal-~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aq--akl~ 241 (641)
T KOG0772|consen 165 HGTKIVSAL-AVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQ--AKLL 241 (641)
T ss_pred CCceEEEEe-eecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcc--eeEE
Confidence 455555666 9999999999999999999999875432 777889999999999998 44433 3444
Q ss_pred ECcchhhh-----------c---cccccccccCCCceeecCCCCccceEEEEeeccCccchhhccc-ccccCCCCcceeE
Q 000725 1124 MDASLELT-----------N---TATTSLFSKHSEKSSFCPSVGEDSAIWLLVSTISDSDAQHNCM-SRDCQKNPVRFWR 1188 (1329)
Q Consensus 1124 d~~s~d~~-----------l---eatv~~fSgdvn~VsF~P~sGeD~AiwLLVST~Sdd~t~~Dlr-a~~~~gH~n~~wR 1188 (1329)
|-..-+.. + -+|...+ ....|+| +.---+|..+.+.+.++||+- .+. +
T Consensus 242 DRdG~~~~e~~KGDQYI~Dm~nTKGHia~l----t~g~whP----~~k~~FlT~s~DgtlRiWdv~~~k~---------q 304 (641)
T KOG0772|consen 242 DRDGFEIVEFSKGDQYIRDMYNTKGHIAEL----TCGCWHP----DNKEEFLTCSYDGTLRIWDVNNTKS---------Q 304 (641)
T ss_pred ccCCceeeeeeccchhhhhhhccCCceeee----ecccccc----CcccceEEecCCCcEEEEecCCchh---------h
Confidence 43333222 2 1333333 3388999 656678877788888889987 222 2
Q ss_pred EEeeeccceecCCCCCCCceeeecCCCeEEeecCCCeEEEEEccccceeeee---ecccC-ceEEEEEecCCCCceEEEe
Q 000725 1189 LALLVKNRVILGSPLDPRASAIGASSGLGIIGTNDGLVYAWELSSGNKLGIL---HHFKG-GTVSCIATDDSGLQALAVA 1264 (1329)
Q Consensus 1189 LALl~K~siI~Gs~ldpra~afs~SG~~gfaGT~DGlVYmWDLstG~kL~tL---~~Heg-~rVSCVA~dps~p~~~AsA 1264 (1329)
+-+. |...-=|.-.-|++|++++.|..+++|-.||-|-+||+-+-.+-... .+|.+ +-++||++++.+.. .+
T Consensus 305 ~qVi-k~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~---Ll 380 (641)
T KOG0772|consen 305 LQVI-KTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNY---LL 380 (641)
T ss_pred eeEE-eeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccch---hh
Confidence 2222 22222377788999999999999999999999999997332222222 57776 35999999966655 45
Q ss_pred cCCCCCCccccCCCCCCCCcEEEeee
Q 000725 1265 GDGPDGGRRQRDPRHGQNDHVRIWKM 1290 (1329)
Q Consensus 1265 ~d~~d~~~r~~~~~~s~D~~VRiW~~ 1290 (1329)
+-+.|.+||+||.|-. +.-+.+|.-
T Consensus 381 SRg~D~tLKvWDLrq~-kkpL~~~tg 405 (641)
T KOG0772|consen 381 SRGFDDTLKVWDLRQF-KKPLNVRTG 405 (641)
T ss_pred hccCCCceeeeecccc-ccchhhhcC
Confidence 5567888888877643 233444443
No 162
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=98.93 E-value=9.6e-09 Score=120.98 Aligned_cols=241 Identities=13% Similarity=0.083 Sum_probs=154.5
Q ss_pred EEEecCCCeEEEEeccCcceEEEeeeeecCCCCcccceeEEEecCCCCCeeEecCCCccEEEEEccccceeee--eccCc
Q 000725 1025 LIAVGESGKLHLWEMNSSWSAQVEECIIPINDCIYPCIVEMKRIPKCAPLVVGHNGFGEFGIWDISKRVLVSR--FSAAR 1102 (1329)
Q Consensus 1025 LVSaSdDGkL~IWDM~SgWsm~tee~Vi~~n~~v~p~I~elKrFpkss~lIVTgSGDgtf~LWDIskg~llqs--F~ahs 1102 (1329)
|+-+-+||.|++.|..+ -..+.|+--.-.-.+|.+-||.++=.| +..+||+.+||.|++.||+....++-. |-+|.
T Consensus 67 LavadE~G~i~l~dt~~-~~fr~ee~~lk~~~aH~nAifDl~wap-ge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~ 144 (720)
T KOG0321|consen 67 LAVADEDGGIILFDTKS-IVFRLEERQLKKPLAHKNAIFDLKWAP-GESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHT 144 (720)
T ss_pred EEEecCCCceeeecchh-hhcchhhhhhcccccccceeEeeccCC-CceeEEEccCCceeeeeeeccceeecceeecccc
Confidence 34455799999999554 333344411123347999999997777 899999999999999999999999766 99999
Q ss_pred cceeE--ecccc-----ccccccCcceEECcchh--hh-----c--ccccc------cccc----------CCCc---ee
Q 000725 1103 ASIYQ--FFPIN-----LFSWQRNGSVSMDASLE--LT-----N--TATTS------LFSK----------HSEK---SS 1147 (1329)
Q Consensus 1103 ~sV~s--fsP~~-----s~S~d~~v~tfd~~s~d--~~-----l--eatv~------~fSg----------dvn~---Vs 1147 (1329)
.+|=+ |.|+. ++.-||.|.+||.+--- .+ + +.++. +... .+.+ |-
T Consensus 145 ~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv 224 (720)
T KOG0321|consen 145 GSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVV 224 (720)
T ss_pred cccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEE
Confidence 99988 88877 88899999999976322 22 1 22222 1111 2222 44
Q ss_pred ecCCCCccceEEEEe-eccCccchhhcccccccCCCCcceeEEEeeeccceecCCCCCCCceeeecCCCeEEeecCCCeE
Q 000725 1148 FCPSVGEDSAIWLLV-STISDSDAQHNCMSRDCQKNPVRFWRLALLVKNRVILGSPLDPRASAIGASSGLGIIGTNDGLV 1226 (1329)
Q Consensus 1148 F~P~sGeD~AiwLLV-ST~Sdd~t~~Dlra~~~~gH~n~~wRLALl~K~siI~Gs~ldpra~afs~SG~~gfaGT~DGlV 1226 (1329)
|+- |+ .-|.. |.+|..++-||+|-+..-.-....=...+..++.-..|. .......+|.|+|+.--|+.|
T Consensus 225 ~fk---De--~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~----~nL~lDssGt~L~AsCtD~sI 295 (720)
T KOG0321|consen 225 LFK---DE--STLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQ----VNLILDSSGTYLFASCTDNSI 295 (720)
T ss_pred EEe---cc--ceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeee----EEEEecCCCCeEEEEecCCcE
Confidence 444 22 12222 223556666999944322222223333344445555666 456777889999999999999
Q ss_pred EEEEccccceeeeeecccCceEEEEEecC-CCCceEEEecCCCCCCccccCC
Q 000725 1227 YAWELSSGNKLGILHHFKGGTVSCIATDD-SGLQALAVAGDGPDGGRRQRDP 1277 (1329)
Q Consensus 1227 YmWDLstG~kL~tL~~Heg~rVSCVA~dp-s~p~~~AsA~d~~d~~~r~~~~ 1277 (1329)
|+|++.+- .+.....|.+..++.+-+-- .-++++-+++++||..--||--
T Consensus 296 y~ynm~s~-s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~v 346 (720)
T KOG0321|consen 296 YFYNMRSL-SISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVV 346 (720)
T ss_pred EEEecccc-CcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeee
Confidence 99998754 34555666665565543320 1255566666655555555543
No 163
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.92 E-value=5.5e-09 Score=122.36 Aligned_cols=231 Identities=16% Similarity=0.208 Sum_probs=149.8
Q ss_pred EEecc-cceeEEEEe-cCCeEEEecCCCeEEEEeccCcceEEEeeeee-----cCCCCcccceeEEEecCCC--------
Q 000725 1007 KLKTD-DCVQCILVC-EPKHLIAVGESGKLHLWEMNSSWSAQVEECII-----PINDCIYPCIVEMKRIPKC-------- 1071 (1329)
Q Consensus 1007 kL~~h-~sV~cIlVc-DpnhLVSaSdDGkL~IWDM~SgWsm~tee~Vi-----~~n~~v~p~I~elKrFpks-------- 1071 (1329)
-+.|| +-|+||-|- -...|+|+|+||+|+||.+.||-++++..|.- .=|..-.-+|+.+ ++-.+
T Consensus 395 vyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAv-A~~~~~~ivnp~~ 473 (733)
T KOG0650|consen 395 VYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAV-AVGECVLIVNPIF 473 (733)
T ss_pred eEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEE-EecCceEEeCccc
Confidence 36788 889999988 89999999999999999999999999877321 1111112233333 22222
Q ss_pred C---------CeeEec----CCCccEEEEEccccceeeeeccC-ccceeEeccccccccccCcceEECcchhhh------
Q 000725 1072 A---------PLVVGH----NGFGEFGIWDISKRVLVSRFSAA-RASIYQFFPINLFSWQRNGSVSMDASLELT------ 1131 (1329)
Q Consensus 1072 s---------~lIVTg----SGDgtf~LWDIskg~llqsF~ah-s~sV~sfsP~~s~S~d~~v~tfd~~s~d~~------ 1131 (1329)
+ .++.++ .-|+.+..|-=+.-.-.+ .+ -..|-.+.++..-+|++.+.-+.+...+--
T Consensus 474 G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~---~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~Vli 550 (733)
T KOG0650|consen 474 GDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELE---KGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLI 550 (733)
T ss_pred cchhhhcchhhhhhcCCCccCCcccceeechhhhhhhc---cceEEEEecCCccceeeeecCCceEEEeccCCCcceEEE
Confidence 1 111111 123455677433111110 00 011222666777789998888877665332
Q ss_pred --c--ccccccccc---CCCceeecCCCCccceEEEEeeccCccchhhcccccccCCCCcceeEEEeeeccceecCCCCC
Q 000725 1132 --N--TATTSLFSK---HSEKSSFCPSVGEDSAIWLLVSTISDSDAQHNCMSRDCQKNPVRFWRLALLVKNRVILGSPLD 1204 (1329)
Q Consensus 1132 --l--eatv~~fSg---dvn~VsF~P~sGeD~AiwLLVST~Sdd~t~~Dlra~~~~gH~n~~wRLALl~K~siI~Gs~ld 1204 (1329)
| ..+..+|+. .+-.+.|+| - --+|||+|.- ..+.||+...+ -+.-|...+.++-
T Consensus 551 HQLSK~~sQ~PF~kskG~vq~v~FHP----s-~p~lfVaTq~-~vRiYdL~kqe---------lvKkL~tg~kwiS---- 611 (733)
T KOG0650|consen 551 HQLSKRKSQSPFRKSKGLVQRVKFHP----S-KPYLFVATQR-SVRIYDLSKQE---------LVKKLLTGSKWIS---- 611 (733)
T ss_pred EecccccccCchhhcCCceeEEEecC----C-CceEEEEecc-ceEEEehhHHH---------HHHHHhcCCeeee----
Confidence 2 344567754 555699999 3 6789998864 45677876322 0000111222222
Q ss_pred CCceeeecCCCeEEeecCCCeEEEEEccccc-eeeeeecccCceEEEEEecCCCCceEEEe
Q 000725 1205 PRASAIGASSGLGIIGTNDGLVYAWELSSGN-KLGILHHFKGGTVSCIATDDSGLQALAVA 1264 (1329)
Q Consensus 1205 pra~afs~SG~~gfaGT~DGlVYmWDLstG~-kL~tL~~Heg~rVSCVA~dps~p~~~AsA 1264 (1329)
..++.+.|..+|+|+.|+.+-..|+.=++ -..+|..|++ .|..||+|+.-|- +|+|
T Consensus 612 --~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~-avr~Va~H~ryPL-fas~ 668 (733)
T KOG0650|consen 612 --SMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEK-AVRSVAFHKRYPL-FASG 668 (733)
T ss_pred --eeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhh-hhhhhhhccccce-eeee
Confidence 37899999999999999999999998774 5688999999 8999999999998 9999
No 164
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=98.92 E-value=1e-08 Score=116.24 Aligned_cols=202 Identities=15% Similarity=0.135 Sum_probs=152.6
Q ss_pred CCCCceeecccccccccccccccccccccceeeecCCC-cEEEEecCccCccccCCCccccccccccccCCCCcEEEEEe
Q 000725 919 VGNPSCVGHTSVMLPFLKDNFGREIALERSCALFTPDG-QYLVLLDSMKTPYCREGRSDCLCSTCTSHRLDENAVKIVKV 997 (1329)
Q Consensus 919 ~~~p~~vg~t~~llp~~~~~~~~~~~~ersglqFTPDG-Q~LvLlgsik~p~CR~~~~dC~Cs~C~~s~seDNtVKIv~V 997 (1329)
..-|.|-|||--.| -+.|.|=- +-|+ +||+|-+|+||++
T Consensus 72 ~~~P~v~GHt~~vL----------------Di~w~PfnD~vIA------------------------SgSeD~~v~vW~I 111 (472)
T KOG0303|consen 72 ASYPLVCGHTAPVL----------------DIDWCPFNDCVIA------------------------SGSEDTKVMVWQI 111 (472)
T ss_pred CCCCCccCcccccc----------------ccccCccCCceee------------------------cCCCCceEEEEEC
Confidence 45689999996554 24566643 4555 9999999999997
Q ss_pred cCcce-----eeeEEEecc-cceeEEEEe--cCCeEEEecCCCeEEEEeccCcceEEEeeeeecCCCCcccceeEEEecC
Q 000725 998 KPGYV-----SVVAKLKTD-DCVQCILVC--EPKHLIAVGESGKLHLWEMNSSWSAQVEECIIPINDCIYPCIVEMKRIP 1069 (1329)
Q Consensus 998 ~~G~v-----sll~kL~~h-~sV~cIlVc--DpnhLVSaSdDGkL~IWDM~SgWsm~tee~Vi~~n~~v~p~I~elKrFp 1069 (1329)
-.++. ++++.|.+| ..|--|+|- .+|.|.|+|-|-++.||++.||-.+-+.. |---|+.+ .|+
T Consensus 112 Pe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~--------hpd~i~S~-sfn 182 (472)
T KOG0303|consen 112 PENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD--------HPDMVYSM-SFN 182 (472)
T ss_pred CCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecC--------CCCeEEEE-Eec
Confidence 76665 789999999 999999998 99999999999999999999998777643 56668888 999
Q ss_pred CCCCeeEecCCCccEEEEEccccceeeeeccCccceeE---ecccc-------ccccccCcceEECcchhhhcccccccc
Q 000725 1070 KCAPLVVGHNGFGEFGIWDISKRVLVSRFSAARASIYQ---FFPIN-------LFSWQRNGSVSMDASLELTNTATTSLF 1139 (1329)
Q Consensus 1070 kss~lIVTgSGDgtf~LWDIskg~llqsF~ahs~sV~s---fsP~~-------s~S~d~~v~tfd~~s~d~~leatv~~f 1139 (1329)
-++++++|..-|..+||||..+|..++.=.+|.+.--+ |.-++ +-.=++.+-+|+-.+.++-. .+
T Consensus 183 ~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~-----~~ 257 (472)
T KOG0303|consen 183 RDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPI-----AL 257 (472)
T ss_pred cCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeeccccccccceeccCcccccCcc-----ee
Confidence 99999999999999999999999999988888766444 33332 11113334444444433331 11
Q ss_pred cc-C-CCceeecCCCCccceEEEEeeccCccchhhccc
Q 000725 1140 SK-H-SEKSSFCPSVGEDSAIWLLVSTISDSDAQHNCM 1175 (1329)
Q Consensus 1140 Sg-d-vn~VsF~P~sGeD~AiwLLVST~Sdd~t~~Dlr 1175 (1329)
.. | .|.| ++|---+|..+-+|+|-++..++-|.+.
T Consensus 258 ~elDtSnGv-l~PFyD~dt~ivYl~GKGD~~IRYyEit 294 (472)
T KOG0303|consen 258 QELDTSNGV-LLPFYDPDTSIVYLCGKGDSSIRYFEIT 294 (472)
T ss_pred EEeccCCce-EEeeecCCCCEEEEEecCCcceEEEEec
Confidence 11 2 2224 4455567999999999999999998877
No 165
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=98.89 E-value=1.3e-08 Score=113.73 Aligned_cols=269 Identities=14% Similarity=0.113 Sum_probs=161.0
Q ss_pred cCCCCcEEEEEecCcceeeeEEEecc-cceeEEEEe---cCCeEEEecCCCeEEEEeccCcceEEEeeeeecCCCCcccc
Q 000725 986 RLDENAVKIVKVKPGYVSVVAKLKTD-DCVQCILVC---EPKHLIAVGESGKLHLWEMNSSWSAQVEECIIPINDCIYPC 1061 (1329)
Q Consensus 986 ~seDNtVKIv~V~~G~vsll~kL~~h-~sV~cIlVc---DpnhLVSaSdDGkL~IWDM~SgWsm~tee~Vi~~n~~v~p~ 1061 (1329)
+.--++|||++..+|. ++.+|+++ +.+..|.|. -|+-+.|++-||.|++||..+--..+...+ ..+.+.
T Consensus 46 ~lSngsv~lyd~~tg~--~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~-----~~~~~~ 118 (376)
T KOG1188|consen 46 SLSNGSVRLYDKGTGQ--LLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISW-----TQQSGT 118 (376)
T ss_pred EecCCeEEEEeccchh--hhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheec-----cCCCCC
Confidence 3445899999999988 99999999 888988887 378888999999999999888544443332 122222
Q ss_pred e-eEEEecCCCCCeeEecC----CCccEEEEEccccce--eeeeccCccceeE--ecccc-----ccccccCcceEECcc
Q 000725 1062 I-VEMKRIPKCAPLVVGHN----GFGEFGIWDISKRVL--VSRFSAARASIYQ--FFPIN-----LFSWQRNGSVSMDAS 1127 (1329)
Q Consensus 1062 I-~elKrFpkss~lIVTgS----GDgtf~LWDIskg~l--lqsF~ahs~sV~s--fsP~~-----s~S~d~~v~tfd~~s 1127 (1329)
+ .++ ..+=..++|..|. .|--+-+||+++.+- =+=+++|.++|++ |-|.. ++|+||.|++|++-.
T Consensus 119 ~f~~l-d~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~ 197 (376)
T KOG1188|consen 119 PFICL-DLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKK 197 (376)
T ss_pred cceEe-eccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCC
Confidence 2 223 2332345555553 355678999999876 4668999999999 88887 999999999999976
Q ss_pred hhhh--c---cccccccccCCCceeecCCCCccceEEEEeeccCccchhhcccccccCCCCcceeEEEeeeccceecCC-
Q 000725 1128 LELT--N---TATTSLFSKHSEKSSFCPSVGEDSAIWLLVSTISDSDAQHNCMSRDCQKNPVRFWRLALLVKNRVILGS- 1201 (1329)
Q Consensus 1128 ~d~~--l---eatv~~fSgdvn~VsF~P~sGeD~AiwLLVST~Sdd~t~~Dlra~~~~gH~n~~wRLALl~K~siI~Gs- 1201 (1329)
-++- | .-+...+.. +.|+- .|.+ -+|-| |-.++-+.|++.-.. +.+-+.++.+-++-
T Consensus 198 d~EeDaL~~viN~~sSI~~----igw~~-~~yk-rI~cl--TH~Etf~~~ele~~~---------~~~~~~~~~~~~~d~ 260 (376)
T KOG1188|consen 198 DNEEDALLHVINHGSSIHL----IGWLS-KKYK-RIMCL--THMETFAIYELEDGS---------EETWLENPDVSADDL 260 (376)
T ss_pred CcchhhHHHhhcccceeee----eeeec-CCcc-eEEEE--EccCceeEEEccCCC---------hhhcccCccchhhhH
Confidence 5444 3 222332333 33442 3333 23333 344444444444111 01111111110000
Q ss_pred ----CCCCCc--eeeecCCCeEEeecCCCeEEEE---Ecc---ccceeeeeecccCceEEEEEecCCCCceEEEecCCCC
Q 000725 1202 ----PLDPRA--SAIGASSGLGIIGTNDGLVYAW---ELS---SGNKLGILHHFKGGTVSCIATDDSGLQALAVAGDGPD 1269 (1329)
Q Consensus 1202 ----~ldpra--~afs~SG~~gfaGT~DGlVYmW---DLs---tG~kL~tL~~Heg~rVSCVA~dps~p~~~AsA~d~~d 1269 (1329)
..|-=+ .+-+--+-..++|+.-|.+-+. |.. .++.+..|++|....|-.|-.+ .+.+.+-++
T Consensus 261 r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~-~~~~~l~TG----- 334 (376)
T KOG1188|consen 261 RKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFD-VKNDVLYTG----- 334 (376)
T ss_pred HhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhh-cccceeecc-----
Confidence 001001 1222233345566633333332 333 4566778888555478877777 667766666
Q ss_pred CCccccCCCCCCCCcEEEeeeCCCcc
Q 000725 1270 GGRRQRDPRHGQNDHVRIWKMDPNLG 1295 (1329)
Q Consensus 1270 ~~~r~~~~~~s~D~~VRiW~~~~~~~ 1295 (1329)
|-||-|.+|+.+...+
T Consensus 335 ----------GEDG~l~~Wk~~da~e 350 (376)
T KOG1188|consen 335 ----------GEDGLLQAWKVEDATE 350 (376)
T ss_pred ----------CCCceEEEEecCCccc
Confidence 7899999999644443
No 166
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.89 E-value=4e-08 Score=120.28 Aligned_cols=265 Identities=16% Similarity=0.205 Sum_probs=180.8
Q ss_pred ccCCCCcEEEEEecCcceeeeEEEecc----cceeEEEEe---cCCeEEEecCCCeEEEEe-ccCcceEEEeeeee----
Q 000725 985 HRLDENAVKIVKVKPGYVSVVAKLKTD----DCVQCILVC---EPKHLIAVGESGKLHLWE-MNSSWSAQVEECII---- 1052 (1329)
Q Consensus 985 s~seDNtVKIv~V~~G~vsll~kL~~h----~sV~cIlVc---DpnhLVSaSdDGkL~IWD-M~SgWsm~tee~Vi---- 1052 (1329)
...+.-.|++||-..|. ++..|..+ -.|..+... |-.-+.+++.||.|+||+ -+.+| ...+.|-
T Consensus 1081 ~ad~r~~i~vwd~e~~~--~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~--~~~eLVTaw~~ 1156 (1387)
T KOG1517|consen 1081 AADDRERIRVWDWEKGR--LLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKW--KKPELVTAWSS 1156 (1387)
T ss_pred EcCCcceEEEEecccCc--eeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccccc--CCceeEEeecc
Confidence 45556789999999988 78888766 457776554 788899999999999998 55555 3333222
Q ss_pred -----cCCCCcccceeEEEecCCCCCeeEecCCCccEEEEEccccceeeeeccCcc-ceeEecccc-------ccccccC
Q 000725 1053 -----PINDCIYPCIVEMKRIPKCAPLVVGHNGFGEFGIWDISKRVLVSRFSAARA-SIYQFFPIN-------LFSWQRN 1119 (1329)
Q Consensus 1053 -----~~n~~v~p~I~elKrFpkss~lIVTgSGDgtf~LWDIskg~llqsF~ahs~-sV~sfsP~~-------s~S~d~~ 1119 (1329)
+...+.+ ++++- --.+++|++||+ -..|+|||..+-++++.+..-++ .|++++++- .+=-||.
T Consensus 1157 Ls~~~~~~r~~~-~v~dW--qQ~~G~Ll~tGd-~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGs 1232 (1387)
T KOG1517|consen 1157 LSDQLPGARGTG-LVVDW--QQQSGHLLVTGD-VRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGS 1232 (1387)
T ss_pred ccccCccCCCCC-eeeeh--hhhCCeEEecCC-eeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCc
Confidence 2223333 44442 123456666665 88999999999999888865544 345576664 4556888
Q ss_pred cceEECcchhhh-c----cccccccccCCCceeecCCCCccceEEEEeeccCccchhhccccc--ccCCCCcceeEEEee
Q 000725 1120 GSVSMDASLELT-N----TATTSLFSKHSEKSSFCPSVGEDSAIWLLVSTISDSDAQHNCMSR--DCQKNPVRFWRLALL 1192 (1329)
Q Consensus 1120 v~tfd~~s~d~~-l----eatv~~fSgdvn~VsF~P~sGeD~AiwLLVST~Sdd~t~~Dlra~--~~~gH~n~~wRLALl 1192 (1329)
+++||-+.-... + -.+.-+ . .+..++|-+ .|.+ -|..++-+.+++.||+|.. +----.+..|+.
T Consensus 1233 vRvyD~R~a~~ds~v~~~R~h~~~-~-~Iv~~slq~-~G~~---elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~y--- 1303 (1387)
T KOG1517|consen 1233 VRVYDRRMAPPDSLVCVYREHNDV-E-PIVHLSLQR-QGLG---ELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEY--- 1303 (1387)
T ss_pred eEEeecccCCccccceeecccCCc-c-cceeEEeec-CCCc---ceeeeccCCeEEEEecccCcccccceeeecccc---
Confidence 999988776664 1 111111 1 155588887 6666 4666677788889999963 111113455552
Q ss_pred eccceecCCCCCCCceeeecCCCeEEeecCCCeEEEEEccccceeeeeecc---c---CceEEEEEecCCCCceEEEecC
Q 000725 1193 VKNRVILGSPLDPRASAIGASSGLGIIGTNDGLVYAWELSSGNKLGILHHF---K---GGTVSCIATDDSGLQALAVAGD 1266 (1329)
Q Consensus 1193 ~K~siI~Gs~ldpra~afs~SG~~gfaGT~DGlVYmWDLstG~kL~tL~~H---e---g~rVSCVA~dps~p~~~AsA~d 1266 (1329)
|+ |-++..+-.-..++++|+- +.|.+|+++ |+.+..+..+ - -+.++|+++||-+.- +|.+
T Consensus 1304 -------Gs--~lTal~VH~hapiiAsGs~-q~ikIy~~~-G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~l-lAaG-- 1369 (1387)
T KOG1517|consen 1304 -------GS--ALTALTVHEHAPIIASGSA-QLIKIYSLS-GEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLL-LAAG-- 1369 (1387)
T ss_pred -------Cc--cceeeeeccCCCeeeecCc-ceEEEEecC-hhhhcccccCcccccCcCCCcceeeecchhHh-hhhc--
Confidence 33 3367788888999999999 999999975 7777776532 2 246899999988876 6666
Q ss_pred CCCCCccccCCCCCCCCcEEEeeeCCC
Q 000725 1267 GPDGGRRQRDPRHGQNDHVRIWKMDPN 1293 (1329)
Q Consensus 1267 ~~d~~~r~~~~~~s~D~~VRiW~~~~~ 1293 (1329)
+.|.+|-||.-.++
T Consensus 1370 -------------~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1370 -------------SADSTVSIYSCEKP 1383 (1387)
T ss_pred -------------cCCceEEEeecCCc
Confidence 77888888875543
No 167
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.85 E-value=1.4e-07 Score=105.03 Aligned_cols=229 Identities=12% Similarity=0.187 Sum_probs=161.3
Q ss_pred ceeeecCCCcEEEEecCccCccccCCCccccccccccccCCCCcEEEEEe--cCcceeeeEEEecc-cceeEEEEec---
Q 000725 948 SCALFTPDGQYLVLLDSMKTPYCREGRSDCLCSTCTSHRLDENAVKIVKV--KPGYVSVVAKLKTD-DCVQCILVCE--- 1021 (1329)
Q Consensus 948 sglqFTPDGQ~LvLlgsik~p~CR~~~~dC~Cs~C~~s~seDNtVKIv~V--~~G~vsll~kL~~h-~sV~cIlVcD--- 1021 (1329)
..+-|.+-|+.++ +||.|.+||||+. .+|.-++-..-++| .+|--|.|.-
T Consensus 17 hdVs~D~~GRRmA------------------------tCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEf 72 (361)
T KOG2445|consen 17 HDVSFDFYGRRMA------------------------TCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEF 72 (361)
T ss_pred eeeeecccCceee------------------------eccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccc
Confidence 4678899999999 9999999999994 45666899999999 9999999994
Q ss_pred CCeEEEecCCCeEEEEec-----c---CcceEEEeeeeecCCCCcccceeEEEecCC--CCCeeEecCCCccEEEEE---
Q 000725 1022 PKHLIAVGESGKLHLWEM-----N---SSWSAQVEECIIPINDCIYPCIVEMKRIPK--CAPLVVGHNGFGEFGIWD--- 1088 (1329)
Q Consensus 1022 pnhLVSaSdDGkL~IWDM-----~---SgWsm~tee~Vi~~n~~v~p~I~elKrFpk--ss~lIVTgSGDgtf~LWD--- 1088 (1329)
++.++++|.||++.||.= + ..|+.++-- .+++ ..+.++ .|-+ -+=.+++++.||++||++
T Consensus 73 GqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl---~Dsr---ssV~DV-~FaP~hlGLklA~~~aDG~lRIYEA~d 145 (361)
T KOG2445|consen 73 GQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTL---VDSR---SSVTDV-KFAPKHLGLKLAAASADGILRIYEAPD 145 (361)
T ss_pred cceEEEEecCCceeeeeecccccccccceeEEEEEe---ecCC---cceeEE-EecchhcceEEEEeccCcEEEEEecCC
Confidence 567999999999999982 2 367766544 3443 345555 4433 245789999999999996
Q ss_pred ---ccccceeeeec-------cCccceeE--ecccc------cccccc------CcceEECcchhhh------ccccccc
Q 000725 1089 ---ISKRVLVSRFS-------AARASIYQ--FFPIN------LFSWQR------NGSVSMDASLELT------NTATTSL 1138 (1329)
Q Consensus 1089 ---Iskg~llqsF~-------ahs~sV~s--fsP~~------s~S~d~------~v~tfd~~s~d~~------leatv~~ 1138 (1329)
++.=+++..|. .|.-+-++ .+|.. .-.-++ .+.+|.....-++ |-++.-+
T Consensus 146 p~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dp 225 (361)
T KOG2445|consen 146 PMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDP 225 (361)
T ss_pred ccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCc
Confidence 45555655555 34444444 33332 222233 6778888777765 2244445
Q ss_pred cccCCCceeecCCCCccceEEEEeeccCccchhhccc------------------------ccccCCCCcceeEEEeeec
Q 000725 1139 FSKHSEKSSFCPSVGEDSAIWLLVSTISDSDAQHNCM------------------------SRDCQKNPVRFWRLALLVK 1194 (1329)
Q Consensus 1139 fSgdvn~VsF~P~sGeD~AiwLLVST~Sdd~t~~Dlr------------------------a~~~~gH~n~~wRLALl~K 1194 (1329)
+.. ++|.|..|-++= -|.|.|.+. .+.|.++ ..+|+.|.+..||
T Consensus 226 I~d----i~wAPn~Gr~y~-~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWr------ 293 (361)
T KOG2445|consen 226 IRD----ISWAPNIGRSYH-LLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWR------ 293 (361)
T ss_pred cee----eeeccccCCcee-eEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEE------
Confidence 555 999996665521 233333331 4444443 5679999999999
Q ss_pred cceecCCCCCCCceeeecCCCeEEeecCCCeEEEEEcc
Q 000725 1195 NRVILGSPLDPRASAIGASSGLGIIGTNDGLVYAWELS 1232 (1329)
Q Consensus 1195 ~siI~Gs~ldpra~afs~SG~~gfaGT~DGlVYmWDLs 1232 (1329)
+.....|..+.+.+.||+|.+|--.
T Consensus 294 -------------v~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 294 -------------VRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred -------------EEEeeeeeEEeecCCCceeeehhhh
Confidence 6678899999999999999999643
No 168
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=98.84 E-value=3.6e-08 Score=110.14 Aligned_cols=262 Identities=15% Similarity=0.174 Sum_probs=168.2
Q ss_pred cceEEEEEEeeeCCCCCCCCcee-----ecccccccccccccccccc---cccceeeecCCC-cEEEEecCccCccccCC
Q 000725 903 KKRTLFIYTVDIQEPRVGNPSCV-----GHTSVMLPFLKDNFGREIA---LERSCALFTPDG-QYLVLLDSMKTPYCREG 973 (1329)
Q Consensus 903 ~~r~Lf~Yki~i~~~~~~~p~~v-----g~t~~llp~~~~~~~~~~~---~ersglqFTPDG-Q~LvLlgsik~p~CR~~ 973 (1329)
++--+|+-.-+.+-.. +.|..+ ||--++=+... .|.+++- -+.+-++|-|+- |+|+
T Consensus 88 ~~Esfytcsw~yd~~~-~~p~la~~G~~GvIrVid~~~~-~~~~~~~ghG~sINeik~~p~~~qlvl------------- 152 (385)
T KOG1034|consen 88 HDESFYTCSWSYDSNT-GNPFLAAGGYLGVIRVIDVVSG-QCSKNYRGHGGSINEIKFHPDRPQLVL------------- 152 (385)
T ss_pred CCcceEEEEEEecCCC-CCeeEEeecceeEEEEEecchh-hhccceeccCccchhhhcCCCCCcEEE-------------
Confidence 5555665444444332 666654 45555544433 3333333 467789999986 7888
Q ss_pred CccccccccccccCCCCcEEEEEecCcceeeeEE---Eecc-cceeEEEEe-cCCeEEEecCCCeEEEEeccCcceEEEe
Q 000725 974 RSDCLCSTCTSHRLDENAVKIVKVKPGYVSVVAK---LKTD-DCVQCILVC-EPKHLIAVGESGKLHLWEMNSSWSAQVE 1048 (1329)
Q Consensus 974 ~~dC~Cs~C~~s~seDNtVKIv~V~~G~vsll~k---L~~h-~sV~cIlVc-DpnhLVSaSdDGkL~IWDM~SgWsm~te 1048 (1329)
++|+|-+||||++.++. ++.- +++| +.|.+|=+. |..+|+|+|.|.+|++|+|++.-.+-..
T Consensus 153 -----------s~SkD~svRlwnI~~~~--Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~l 219 (385)
T KOG1034|consen 153 -----------SASKDHSVRLWNIQTDV--CVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKL 219 (385)
T ss_pred -----------EecCCceEEEEeccCCe--EEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhh
Confidence 99999999999999987 5554 5778 999999999 9999999999999999999965444444
Q ss_pred eeee-----------cCCCC----------cccceeEEEecCCCCCeeEecCCCccEEEEEccccceeeeeccCccceeE
Q 000725 1049 ECII-----------PINDC----------IYPCIVEMKRIPKCAPLVVGHNGFGEFGIWDISKRVLVSRFSAARASIYQ 1107 (1329)
Q Consensus 1049 e~Vi-----------~~n~~----------v~p~I~elKrFpkss~lIVTgSGDgtf~LWDIskg~llqsF~ahs~sV~s 1107 (1329)
|..+ |.-.+ |..++-++ ||.. .+|++=|+++.|..|-- |++-..|+ .
T Consensus 220 E~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCv-rw~g--d~ilSkscenaI~~w~p--gkl~e~~~-------~ 287 (385)
T KOG1034|consen 220 ELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCV-RWFG--DFILSKSCENAIVCWKP--GKLEESIH-------N 287 (385)
T ss_pred hhhcccCCCCccCcCCccccccccccccccccchHHHH-HHHh--hheeecccCceEEEEec--chhhhhhh-------c
Confidence 4221 22223 33333444 6654 89999999999999965 34444443 3
Q ss_pred eccccccccccCcceEECcchhhhccccccccccCCCceeecCCCCccceEEEEeeccCccchhhcccccccCCCCccee
Q 000725 1108 FFPINLFSWQRNGSVSMDASLELTNTATTSLFSKHSEKSSFCPSVGEDSAIWLLVSTISDSDAQHNCMSRDCQKNPVRFW 1187 (1329)
Q Consensus 1108 fsP~~s~S~d~~v~tfd~~s~d~~leatv~~fSgdvn~VsF~P~sGeD~AiwLLVST~Sdd~t~~Dlra~~~~gH~n~~w 1187 (1329)
+-|-++ --.....|++..|| -||-. -+|-| ...||..+-......-|||+-.+ +...-
T Consensus 288 vkp~es--~~Ti~~~~~~~~c~-------iWfir----f~~d~-----~~~~la~gnq~g~v~vwdL~~~e----p~~~t 345 (385)
T KOG1034|consen 288 VKPPES--ATTILGEFDYPMCD-------IWFIR----FAFDP-----WQKMLALGNQSGKVYVWDLDNNE----PPKCT 345 (385)
T ss_pred cCCCcc--ceeeeeEeccCccc-------eEEEE----EeecH-----HHHHHhhccCCCcEEEEECCCCC----CccCc
Confidence 223221 01122444444443 34444 33444 35677777777778889998554 22211
Q ss_pred EEEeeeccceecCCCCCCCceeeecCCCeEEeecCCCeEEEEEccc
Q 000725 1188 RLALLVKNRVILGSPLDPRASAIGASSGLGIIGTNDGLVYAWELSS 1233 (1329)
Q Consensus 1188 RLALl~K~siI~Gs~ldpra~afs~SG~~gfaGT~DGlVYmWDLst 1233 (1329)
.|..-.-.+. =|-++|+.+|..+++-.+|+.|+-||-.+
T Consensus 346 tl~~s~~~~t-------VRQ~sfS~dgs~lv~vcdd~~Vwrwdrv~ 384 (385)
T KOG1034|consen 346 TLTHSKSGST-------VRQTSFSRDGSILVLVCDDGTVWRWDRVS 384 (385)
T ss_pred eEEeccccce-------eeeeeecccCcEEEEEeCCCcEEEEEeec
Confidence 2211111111 15689999999999999999999999654
No 169
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=98.84 E-value=1.6e-08 Score=117.73 Aligned_cols=226 Identities=12% Similarity=0.133 Sum_probs=152.5
Q ss_pred eeeeEEEecc-cceeEEEEe-cCCeEEEecCCCeEEEEeccCcceEEEeeeeecCCCCcccceeEEEecCCC-CCeeEec
Q 000725 1002 VSVVAKLKTD-DCVQCILVC-EPKHLIAVGESGKLHLWEMNSSWSAQVEECIIPINDCIYPCIVEMKRIPKC-APLVVGH 1078 (1329)
Q Consensus 1002 vsll~kL~~h-~sV~cIlVc-DpnhLVSaSdDGkL~IWDM~SgWsm~tee~Vi~~n~~v~p~I~elKrFpks-s~lIVTg 1078 (1329)
+++-++|+|| +.|.|+.|. |+-.|+|+|||-+|+|||.-.- + .+-...-+|...|+++|=+|.. +.+||||
T Consensus 40 L~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~---K---llhsI~TgHtaNIFsvKFvP~tnnriv~sg 113 (758)
T KOG1310|consen 40 LDLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEY---K---LLHSISTGHTANIFSVKFVPYTNNRIVLSG 113 (758)
T ss_pred cchhhhhccccceecceeecCCCCEEeecCCcceEEeecchhc---c---eeeeeecccccceeEEeeeccCCCeEEEec
Confidence 3677899999 999999999 9999999999999999993310 0 1111222899999999766653 5689999
Q ss_pred CCCccEEEEEccc----------cceeeeeccCccceeE--ecccc-----ccccccCcceEECcchhhhc---------
Q 000725 1079 NGFGEFGIWDISK----------RVLVSRFSAARASIYQ--FFPIN-----LFSWQRNGSVSMDASLELTN--------- 1132 (1329)
Q Consensus 1079 SGDgtf~LWDIsk----------g~llqsF~ahs~sV~s--fsP~~-----s~S~d~~v~tfd~~s~d~~l--------- 1132 (1329)
.||..|+|+|+.+ -..+.-|.-|.+.|-- -.|.+ ++|=||+++-+|++--....
T Consensus 114 AgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l 193 (758)
T KOG1310|consen 114 AGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSIL 193 (758)
T ss_pred cCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHH
Confidence 9999999999995 2235566777777765 44554 77889999999887622220
Q ss_pred -cccccccccCCCceeecCCCCccceEEEEeeccCccchhhccc--ccccCCCCcce-------eEEEeeeccce--ecC
Q 000725 1133 -TATTSLFSKHSEKSSFCPSVGEDSAIWLLVSTISDSDAQHNCM--SRDCQKNPVRF-------WRLALLVKNRV--ILG 1200 (1329)
Q Consensus 1133 -eatv~~fSgdvn~VsF~P~sGeD~AiwLLVST~Sdd~t~~Dlr--a~~~~gH~n~~-------wRLALl~K~si--I~G 1200 (1329)
.-+.+-++- -.+...| -+ --+|+||+-+--.++||.| ++.+-+..... -+++-|.+..+ +=|
T Consensus 194 ~ny~~~liel--k~ltisp---~r-p~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~g 267 (758)
T KOG1310|consen 194 VNYNPQLIEL--KCLTISP---SR-PYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQG 267 (758)
T ss_pred HHhchhhhee--eeeeecC---CC-CceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCccc
Confidence 111111111 1244455 24 5689999999999999966 33322111100 12333343333 111
Q ss_pred CCCCC-----CceeeecCCCeEEeecCCCeEEEEEccccceeeee
Q 000725 1201 SPLDP-----RASAIGASSGLGIIGTNDGLVYAWELSSGNKLGIL 1240 (1329)
Q Consensus 1201 s~ldp-----ra~afs~SG~~gfaGT~DGlVYmWDLstG~kL~tL 1240 (1329)
.+|. +-++|+|+|.-+.-....--||+.|+.-++.....
T Consensus 268 -n~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y 311 (758)
T KOG1310|consen 268 -NLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPY 311 (758)
T ss_pred -ccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCceee
Confidence 1333 44789999999999999999999999998876543
No 170
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=98.82 E-value=3e-07 Score=100.27 Aligned_cols=229 Identities=14% Similarity=0.143 Sum_probs=156.5
Q ss_pred eeecCCCcEEEEecCccCccccCCCccccccccccccCCCCcEEEEEecCcc---e-----eeeEEEecc-cceeEEEEe
Q 000725 950 ALFTPDGQYLVLLDSMKTPYCREGRSDCLCSTCTSHRLDENAVKIVKVKPGY---V-----SVVAKLKTD-DCVQCILVC 1020 (1329)
Q Consensus 950 lqFTPDGQ~LvLlgsik~p~CR~~~~dC~Cs~C~~s~seDNtVKIv~V~~G~---v-----sll~kL~~h-~sV~cIlVc 1020 (1329)
-+++|-+|||+ .+..+++|-|.++++-- . .++.++.|| +.+-.+.+.
T Consensus 16 qa~sp~~~~l~------------------------agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~ 71 (325)
T KOG0649|consen 16 QAISPSKQYLF------------------------AGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH 71 (325)
T ss_pred HhhCCcceEEE------------------------EecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee
Confidence 45789999999 88899999998866421 1 467788999 889999998
Q ss_pred cCCeEEEecCCCeEEEEe----ccCcceEEEeeeeecCCCC--cccceeEEEecCCCCCeeEecCCCccEEEEEccccce
Q 000725 1021 EPKHLIAVGESGKLHLWE----MNSSWSAQVEECIIPINDC--IYPCIVEMKRIPKCAPLVVGHNGFGEFGIWDISKRVL 1094 (1329)
Q Consensus 1021 DpnhLVSaSdDGkL~IWD----M~SgWsm~tee~Vi~~n~~--v~p~I~elKrFpkss~lIVTgSGDgtf~LWDIskg~l 1094 (1329)
| ++|.|+++ |.++=|- ..|--+-+..+.++|--.. -.|.|..+ -.-+..+-|+..+||+-+--||+++|..
T Consensus 72 d-~~Lls~gd-G~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam-~ldP~enSi~~AgGD~~~y~~dlE~G~i 148 (325)
T KOG0649|consen 72 D-DFLLSGGD-GLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAM-WLDPSENSILFAGGDGVIYQVDLEDGRI 148 (325)
T ss_pred h-hheeeccC-ceEEEeeehhhhhhccchhhhhhcCccccCcccCCcccee-EeccCCCcEEEecCCeEEEEEEecCCEE
Confidence 5 68888885 9999987 2222222222333333222 46778777 4444456666666999999999999999
Q ss_pred eeeeccCccceeE-ecccc-----ccccccCcceEECcchhhhccccccccccCCCceeecCCCCccceEEEEeecc---
Q 000725 1095 VSRFSAARASIYQ-FFPIN-----LFSWQRNGSVSMDASLELTNTATTSLFSKHSEKSSFCPSVGEDSAIWLLVSTI--- 1165 (1329)
Q Consensus 1095 lqsF~ahs~sV~s-fsP~~-----s~S~d~~v~tfd~~s~d~~leatv~~fSgdvn~VsF~P~sGeD~AiwLLVST~--- 1165 (1329)
..+|.+|++-|.+ ..... +++=||++|+||..+..+. +....-.+.-...| |.+.||..=..
T Consensus 149 ~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v-----~~ie~yk~~~~lRp----~~g~wigala~~ed 219 (325)
T KOG0649|consen 149 QREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHV-----SMIEPYKNPNLLRP----DWGKWIGALAVNED 219 (325)
T ss_pred EEEEcCCcceeeeeeecccCcceeecCCCccEEEEecccccee-----EEeccccChhhcCc----ccCceeEEEeccCc
Confidence 9999999999999 33222 8999999999999887776 11122122234566 66776643222
Q ss_pred ------CccchhhcccccccCCCCcceeEEEeeeccceecCCCCCCCceeeecCCCeEEeecCCCeEEEEEcc
Q 000725 1166 ------SDSDAQHNCMSRDCQKNPVRFWRLALLVKNRVILGSPLDPRASAIGASSGLGIIGTNDGLVYAWELS 1232 (1329)
Q Consensus 1166 ------Sdd~t~~Dlra~~~~gH~n~~wRLALl~K~siI~Gs~ldpra~afs~SG~~gfaGT~DGlVYmWDLs 1232 (1329)
--..++|.+|+.++ .. +| ++--|.-....-...+++|.+.+.|.-|-+.
T Consensus 220 WlvCGgGp~lslwhLrsse~---------t~-------vf--pipa~v~~v~F~~d~vl~~G~g~~v~~~~l~ 274 (325)
T KOG0649|consen 220 WLVCGGGPKLSLWHLRSSES---------TC-------VF--PIPARVHLVDFVDDCVLIGGEGNHVQSYTLN 274 (325)
T ss_pred eEEecCCCceeEEeccCCCc---------eE-------EE--ecccceeEeeeecceEEEeccccceeeeeec
Confidence 22356789998772 11 11 1222334444556788899999999999774
No 171
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=98.81 E-value=1.1e-07 Score=113.01 Aligned_cols=262 Identities=17% Similarity=0.172 Sum_probs=172.6
Q ss_pred ccCCCCcEEEEEecCcce-----------------------eee------EEEecc-cceeEEEEe-cCCeEEEecCCCe
Q 000725 985 HRLDENAVKIVKVKPGYV-----------------------SVV------AKLKTD-DCVQCILVC-EPKHLIAVGESGK 1033 (1329)
Q Consensus 985 s~seDNtVKIv~V~~G~v-----------------------sll------~kL~~h-~sV~cIlVc-DpnhLVSaSdDGk 1033 (1329)
++|||.+||||.+-.+-. ++. +-|+|| +=|.++-|. +...|-|+|.|.+
T Consensus 211 S~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDks 290 (764)
T KOG1063|consen 211 SSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKS 290 (764)
T ss_pred ecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheecccCcc
Confidence 899999999999766541 111 345699 999999999 6669999999999
Q ss_pred EEEEeccCc---ceEEEeeeeecCCCC-cccc---eeEEEecCCCCCeeEecCCCccEEEEE-ccccce--eeeeccCcc
Q 000725 1034 LHLWEMNSS---WSAQVEECIIPINDC-IYPC---IVEMKRIPKCAPLVVGHNGFGEFGIWD-ISKRVL--VSRFSAARA 1103 (1329)
Q Consensus 1034 L~IWDM~Sg---Wsm~tee~Vi~~n~~-v~p~---I~elKrFpkss~lIVTgSGDgtf~LWD-Iskg~l--lqsF~ahs~ 1103 (1329)
++||.=.+. |+...-- | ++.+ -+.. -|++++..||++++.|-+.+|- ..+++. .-.+.||-+
T Consensus 291 miiW~pd~~tGiWv~~vRl-------Ge~gg~a~GF~g~-lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~ 362 (764)
T KOG1063|consen 291 MIIWKPDENTGIWVDVVRL-------GEVGGSAGGFWGG-LWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVD 362 (764)
T ss_pred eEEEecCCccceEEEEEEe-------ecccccccceeeE-EEcCCCCEEEEecccCcEEEEeccCccceeeccccccccc
Confidence 999996666 8765544 2 3322 3444 6888899999999999999998 455555 456899999
Q ss_pred ceeE--ecccc----ccccccCcceEECcchhhh-----c-cccccccccCCCceeecCCCCccceEEEEeeccCccchh
Q 000725 1104 SIYQ--FFPIN----LFSWQRNGSVSMDASLELT-----N-TATTSLFSKHSEKSSFCPSVGEDSAIWLLVSTISDSDAQ 1171 (1329)
Q Consensus 1104 sV~s--fsP~~----s~S~d~~v~tfd~~s~d~~-----l-eatv~~fSgdvn~VsF~P~sGeD~AiwLLVST~Sdd~t~ 1171 (1329)
.|.. ..|.+ +-+.|-+=|+|.-..-+.. | +.|+. |-..++|.+ +| ..+||.+++..--
T Consensus 363 ~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGy----Dl~c~~~vn---~~---~~FVSgAdEKVlR 432 (764)
T KOG1063|consen 363 GVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGY----DLTCLSFVN---ED---LQFVSGADEKVLR 432 (764)
T ss_pred cceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccc----cceeeehcc---CC---ceeeecccceeee
Confidence 9999 78888 6677878888876622221 3 44444 556699998 35 3488888776532
Q ss_pred -hccc------ccccCCCCcceeEEEeeeccceecCCCCCCCce---eeecCCCeEEe-ecCCCeEEE-E-Ecc-cc---
Q 000725 1172 -HNCM------SRDCQKNPVRFWRLALLVKNRVILGSPLDPRAS---AIGASSGLGII-GTNDGLVYA-W-ELS-SG--- 1234 (1329)
Q Consensus 1172 -~Dlr------a~~~~gH~n~~wRLALl~K~siI~Gs~ldpra~---afs~SG~~gfa-GT~DGlVYm-W-DLs-tG--- 1234 (1329)
|+.- +....+ +. +.|+..-|+.+ +++.|-.-++= -+++|...+ | ++. ..
T Consensus 433 vF~aPk~fv~~l~~i~g-------~~-------~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~ 498 (764)
T KOG1063|consen 433 VFEAPKSFVKSLMAICG-------KC-------FKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPC 498 (764)
T ss_pred eecCcHHHHHHHHHHhC-------cc-------ccCchhcccccccccccccCCCCcccccccccccceeeecccccCch
Confidence 4433 221111 11 22333344444 34444444442 222332211 0 000 00
Q ss_pred -----------------ceeeeeecccCceEEEEEecCCCCceEEEecCCCCCCccccCCCCCCC--CcEEEeeeCC
Q 000725 1235 -----------------NKLGILHHFKGGTVSCIATDDSGLQALAVAGDGPDGGRRQRDPRHGQN--DHVRIWKMDP 1292 (1329)
Q Consensus 1235 -----------------~kL~tL~~Heg~rVSCVA~dps~p~~~AsA~d~~d~~~r~~~~~~s~D--~~VRiW~~~~ 1292 (1329)
--+.+||||-. .|.|++++|+++- +|+| ||++.- .-||+|.+..
T Consensus 499 ~L~ePP~EdqLq~~tLwPEv~KLYGHGy-Ev~~l~~s~~gnl-iASa------------CKS~~~ehAvI~lw~t~~ 561 (764)
T KOG1063|consen 499 ELTEPPTEDQLQQNTLWPEVHKLYGHGY-EVYALAISPTGNL-IASA------------CKSSLKEHAVIRLWNTAN 561 (764)
T ss_pred hccCCChHHHHHHhccchhhHHhccCce-eEEEEEecCCCCE-Eeeh------------hhhCCccceEEEEEeccc
Confidence 11456799999 8999999999987 8888 665543 5689988754
No 172
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=98.79 E-value=1.9e-07 Score=106.13 Aligned_cols=272 Identities=13% Similarity=0.118 Sum_probs=172.9
Q ss_pred ceeeecCCCcEEEEecCccCccccCCCccccccccccccCCCCcEEEEEecCcceeee---EEEecc---cceeEEEEe-
Q 000725 948 SCALFTPDGQYLVLLDSMKTPYCREGRSDCLCSTCTSHRLDENAVKIVKVKPGYVSVV---AKLKTD---DCVQCILVC- 1020 (1329)
Q Consensus 948 sglqFTPDGQ~LvLlgsik~p~CR~~~~dC~Cs~C~~s~seDNtVKIv~V~~G~vsll---~kL~~h---~sV~cIlVc- 1020 (1329)
..|||+..||+|| ++++|.-+++|+|..-.++-+ --|++| -.+-|+.+-
T Consensus 60 NAlqFS~N~~~L~------------------------SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~ 115 (609)
T KOG4227|consen 60 NALQFSHNDRFLA------------------------SGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDL 115 (609)
T ss_pred ceeeeccCCeEEe------------------------ecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEcc
Confidence 4589999999999 999999999999887654333 125555 578999999
Q ss_pred cCCeEEEecCCCeEEEEeccCcceEEEeeeeecCCCC-cccceeEEEecCCCCCeeEecCCCccEEEEEccccc-eeeee
Q 000725 1021 EPKHLIAVGESGKLHLWEMNSSWSAQVEECIIPINDC-IYPCIVEMKRIPKCAPLVVGHNGFGEFGIWDISKRV-LVSRF 1098 (1329)
Q Consensus 1021 DpnhLVSaSdDGkL~IWDM~SgWsm~tee~Vi~~n~~-v~p~I~elKrFpkss~lIVTgSGDgtf~LWDIskg~-llqsF 1098 (1329)
+++.|.|++-+|++|.-|+.|.-++-.+- --+|.+ ||+. -..+-++.+++-+-+|-+.+||+.-++ .+.-|
T Consensus 116 ~N~~~~SG~~~~~VI~HDiEt~qsi~V~~--~~~~~~~VY~m-----~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~ 188 (609)
T KOG4227|consen 116 ENRFLYSGERWGTVIKHDIETKQSIYVAN--ENNNRGDVYHM-----DQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLV 188 (609)
T ss_pred CCeeEecCCCcceeEeeecccceeeeeec--ccCcccceeec-----ccCCCCceEEEEecCceEEEEeccCCCCCCcee
Confidence 99999999999999999999965543221 134443 4443 334458899999999999999999988 33333
Q ss_pred c-cCccce-eE--ecccc-----ccccccCcceEECcchhhh---------ccccccccccCCCceeecCCCCccceEEE
Q 000725 1099 S-AARASI-YQ--FFPIN-----LFSWQRNGSVSMDASLELT---------NTATTSLFSKHSEKSSFCPSVGEDSAIWL 1160 (1329)
Q Consensus 1099 ~-ahs~sV-~s--fsP~~-----s~S~d~~v~tfd~~s~d~~---------leatv~~fSgdvn~VsF~P~sGeD~AiwL 1160 (1329)
- |-...- ++ |.|.. .-+--|-+.+|+.+--..- |.+...-.- ++.|.| + |..|
T Consensus 189 ~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M----~~~~~~-~----G~Q~ 259 (609)
T KOG4227|consen 189 LPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWM----GSLWSP-S----GNQF 259 (609)
T ss_pred eecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhh----heeeCC-C----CCee
Confidence 2 222222 22 88877 3344556678887654433 111111111 267887 2 4444
Q ss_pred EeeccCccchhhccccccc-----CCCCcceeEEEeeeccceecCCCCCCCceeeecCCCeEEeecCCCeEEEEEcccc-
Q 000725 1161 LVSTISDSDAQHNCMSRDC-----QKNPVRFWRLALLVKNRVILGSPLDPRASAIGASSGLGIIGTNDGLVYAWELSSG- 1234 (1329)
Q Consensus 1161 LVST~Sdd~t~~Dlra~~~-----~gH~n~~wRLALl~K~siI~Gs~ldpra~afs~SG~~gfaGT~DGlVYmWDLstG- 1234 (1329)
|.=-.-----+||+-+++| +-|+|+..-+. -+|- ++|. ..+.+++|+.|-.||||.|--.
T Consensus 260 msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~-T~KS------------~~F~-~D~~v~tGSD~~~i~~WklP~~~ 325 (609)
T KOG4227|consen 260 MSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIK-TIKS------------MTFI-DDYTVATGSDHWGIHIWKLPRAN 325 (609)
T ss_pred hhhhccCCCEEeeeecccceeEeccCCCCcceeee-eeee------------eeee-cceeeeccCcccceEEEecCCCc
Confidence 4111111111277765432 33455544433 2333 3332 3355899999999999987432
Q ss_pred ----------------------ceeeeeecccCceEEEEEecCCCCceEEEecCCCCCCccccCC
Q 000725 1235 ----------------------NKLGILHHFKGGTVSCIATDDSGLQALAVAGDGPDGGRRQRDP 1277 (1329)
Q Consensus 1235 ----------------------~kL~tL~~Heg~rVSCVA~dps~p~~~AsA~d~~d~~~r~~~~ 1277 (1329)
.-+..|.||.. .|--|.++|-- ..+++.+-...++||.+
T Consensus 326 ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRS-v~NQVRF~~H~---~~l~SSGVE~~~KlWS~ 386 (609)
T KOG4227|consen 326 DSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRS-VPNQVRFSQHN---NLLVSSGVENSFKLWSD 386 (609)
T ss_pred cccCccccCcchhhCchhheecceeEEEecccc-cccceeecCCc---ceEeccchhhheecccc
Confidence 23556899999 68899999443 34454455566666665
No 173
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=98.76 E-value=5.4e-07 Score=107.34 Aligned_cols=293 Identities=14% Similarity=0.151 Sum_probs=186.7
Q ss_pred ccCCCCcEEEEEecCcceeeeEEEecccceeEEEEecCCeEEEe-cCCCeEEEEeccCcceEEEeeeeecCCCCccccee
Q 000725 985 HRLDENAVKIVKVKPGYVSVVAKLKTDDCVQCILVCEPKHLIAV-GESGKLHLWEMNSSWSAQVEECIIPINDCIYPCIV 1063 (1329)
Q Consensus 985 s~seDNtVKIv~V~~G~vsll~kL~~h~sV~cIlVcDpnhLVSa-SdDGkL~IWDM~SgWsm~tee~Vi~~n~~v~p~I~ 1063 (1329)
+++.|+.|++|.+.--|.-.+.++.+ .++.|++|.|...++++ .-||.+.+||.+---++=++. +--.++=..|..+
T Consensus 74 sG~sD~~v~lW~l~~~~~~~i~~~~g-~~~~~~cv~a~~~~~~~~~ad~~v~vw~~~~~e~~~~~~-~rf~~k~~ipLcL 151 (764)
T KOG1063|consen 74 SGDSDGRVILWKLRDEYLIKIYTIQG-HCKECVCVVARSSVMTCKAADGTVSVWDKQQDEVFLLAV-LRFEIKEAIPLCL 151 (764)
T ss_pred EccCCCcEEEEEEeehheEEEEeecC-cceeEEEEEeeeeEEEeeccCceEEEeecCCCceeeehh-eehhhhhHhhHHH
Confidence 99999999999999777666777777 67888889988888888 679999999983322221111 1112222333333
Q ss_pred EEEecCCCCCeeEecCC-CccEEEEEcc--ccceeeeeccCccceeE--ecccc-------ccccccCcceEECcchhhh
Q 000725 1064 EMKRIPKCAPLVVGHNG-FGEFGIWDIS--KRVLVSRFSAARASIYQ--FFPIN-------LFSWQRNGSVSMDASLELT 1131 (1329)
Q Consensus 1064 elKrFpkss~lIVTgSG-Dgtf~LWDIs--kg~llqsF~ahs~sV~s--fsP~~-------s~S~d~~v~tfd~~s~d~~ 1131 (1329)
.. .++....++.++| +-.+-|.-=+ +-+.+...+||.+-|-+ |.--+ ++|.|+.||+|-+.-.+..
T Consensus 152 ~~--~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~ 229 (764)
T KOG1063|consen 152 AA--LKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDE 229 (764)
T ss_pred hh--hccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCc
Confidence 32 2223344443333 2223332222 22458889999999988 54443 7899999999987665510
Q ss_pred ---------------------------------ccccccccccCCCceeecCCCCccceEEEEeeccCccchhhcccccc
Q 000725 1132 ---------------------------------NTATTSLFSKHSEKSSFCPSVGEDSAIWLLVSTISDSDAQHNCMSRD 1178 (1329)
Q Consensus 1132 ---------------------------------leatv~~fSgdvn~VsF~P~sGeD~AiwLLVST~Sdd~t~~Dlra~~ 1178 (1329)
+.+|--||.+ +..+| + +.-||.+++|.+.-.|--..+
T Consensus 230 ~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~s----v~W~p-~----~~~LLSASaDksmiiW~pd~~- 299 (764)
T KOG1063|consen 230 DSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYS----VWWHP-E----GLDLLSASADKSMIIWKPDEN- 299 (764)
T ss_pred cccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEE----EEEcc-c----hhhheecccCcceEEEecCCc-
Confidence 2355666666 99999 3 355887777777666644333
Q ss_pred cCCCCcceeEEEeeeccceecCCCCCCCceeeecCCCeEEeecCCCeEEEEEcccc---ceeeeeecccCceEEEEEecC
Q 000725 1179 CQKNPVRFWRLALLVKNRVILGSPLDPRASAIGASSGLGIIGTNDGLVYAWELSSG---NKLGILHHFKGGTVSCIATDD 1255 (1329)
Q Consensus 1179 ~~gH~n~~wRLALl~K~siI~Gs~ldpra~afs~SG~~gfaGT~DGlVYmWDLstG---~kL~tL~~Heg~rVSCVA~dp 1255 (1329)
.+.|.-.+-+-+.= |+++-==.+-+++++..+++-+.-|-.|+|-.... .-.....||-+ -|..|+-+|
T Consensus 300 -----tGiWv~~vRlGe~g--g~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~-~V~dv~W~p 371 (764)
T KOG1063|consen 300 -----TGIWVDVVRLGEVG--GSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVD-GVKDVDWDP 371 (764)
T ss_pred -----cceEEEEEEeeccc--ccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeeccccccccc-cceeeeecC
Confidence 25565433222222 33222234678889999999999999999992221 33445579999 699999999
Q ss_pred CCCceEEEecCCCCCCccccCCCCCCCCcEEEee--eCC-----CcceeecCCCCccc
Q 000725 1256 SGLQALAVAGDGPDGGRRQRDPRHGQNDHVRIWK--MDP-----NLGCVRNSNGDSKF 1306 (1329)
Q Consensus 1256 s~p~~~AsA~d~~d~~~r~~~~~~s~D~~VRiW~--~~~-----~~~~~~~~~~~~~~ 1306 (1329)
++-= +.++ +-|-|-|++++--.++. |- .+| .|-|++--|+|..|
T Consensus 372 sGef-lLsv--s~DQTTRlFa~wg~q~~----wHEiaRPQiHGyDl~c~~~vn~~~~F 422 (764)
T KOG1063|consen 372 SGEF-LLSV--SLDQTTRLFARWGRQQE----WHEIARPQIHGYDLTCLSFVNEDLQF 422 (764)
T ss_pred CCCE-EEEe--ccccceeeecccccccc----eeeecccccccccceeeehccCCcee
Confidence 9986 5555 34677777777422221 43 122 46799988887655
No 174
>KOG4328 consensus WD40 protein [Function unknown]
Probab=98.74 E-value=1.1e-07 Score=109.28 Aligned_cols=204 Identities=18% Similarity=0.197 Sum_probs=142.6
Q ss_pred cccceeEEEecCCCCC--eeEecCCCccEEEEEccccc----eeeeeccCccceeE--ecccc-----ccccccCcceEE
Q 000725 1058 IYPCIVEMKRIPKCAP--LVVGHNGFGEFGIWDISKRV----LVSRFSAARASIYQ--FFPIN-----LFSWQRNGSVSM 1124 (1329)
Q Consensus 1058 v~p~I~elKrFpkss~--lIVTgSGDgtf~LWDIskg~----llqsF~ahs~sV~s--fsP~~-----s~S~d~~v~tfd 1124 (1329)
++.-|..+ .|.++-. +|+.|+-.|.+-+||+...+ -+--|..|+..|-. |+|.. +.|+||+|+.-|
T Consensus 185 ~~~Rit~l-~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D 263 (498)
T KOG4328|consen 185 TDRRITSL-AFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQD 263 (498)
T ss_pred cccceEEE-EecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeee
Confidence 55667777 8888765 89999999999999994222 28889999999999 99988 889999999988
Q ss_pred Ccchhhh----ccccccccccCCCceeecCCCCccceEEEEeeccCccchhhcccccccCCCCcceeEEEeeeccceecC
Q 000725 1125 DASLELT----NTATTSLFSKHSEKSSFCPSVGEDSAIWLLVSTISDSDAQHNCMSRDCQKNPVRFWRLALLVKNRVILG 1200 (1329)
Q Consensus 1125 ~~s~d~~----leatv~~fSgdvn~VsF~P~sGeD~AiwLLVST~Sdd~t~~Dlra~~~~gH~n~~wRLALl~K~siI~G 1200 (1329)
....--. +.....||++ .-|+- |+ +.-|++.+.. --..||+|.+- -..+-|||+ |. .|-+
T Consensus 264 ~~~~i~e~v~s~~~d~~~fs~----~d~~~---e~-~~vl~~~~~G-~f~~iD~R~~~---s~~~~~~lh---~k-KI~s 327 (498)
T KOG4328|consen 264 FEGNISEEVLSLDTDNIWFSS----LDFSA---ES-RSVLFGDNVG-NFNVIDLRTDG---SEYENLRLH---KK-KITS 327 (498)
T ss_pred ecchhhHHHhhcCccceeeee----ccccC---CC-ccEEEeeccc-ceEEEEeecCC---ccchhhhhh---hc-ccce
Confidence 7665444 2345677877 44443 44 5444444433 44668999764 124455544 22 4433
Q ss_pred CCCCCCceeeecCCC-eEEeecCCCeEEEEEccc--cce--eeeeecccCceEEEEEecCCCCceEEEecCCCCCCcccc
Q 000725 1201 SPLDPRASAIGASSG-LGIIGTNDGLVYAWELSS--GNK--LGILHHFKGGTVSCIATDDSGLQALAVAGDGPDGGRRQR 1275 (1329)
Q Consensus 1201 s~ldpra~afs~SG~-~gfaGT~DGlVYmWDLst--G~k--L~tL~~Heg~rVSCVA~dps~p~~~AsA~d~~d~~~r~~ 1275 (1329)
+++-|... ++++++.|+++.+||+-. +++ +-.+..|.- .|.+.-++|++-. ++..
T Consensus 328 -------v~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~Hrr-sV~sAyFSPs~gt-l~TT----------- 387 (498)
T KOG4328|consen 328 -------VALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRR-SVNSAYFSPSGGT-LLTT----------- 387 (498)
T ss_pred -------eecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccc-eeeeeEEcCCCCc-eEee-----------
Confidence 55555555 567899999999999853 333 233457888 7999999998876 4444
Q ss_pred CCCCCCCCcEEEeee------CCCcceeecCCC
Q 000725 1276 DPRHGQNDHVRIWKM------DPNLGCVRNSNG 1302 (1329)
Q Consensus 1276 ~~~~s~D~~VRiW~~------~~~~~~~~~~~~ 1302 (1329)
++|+.||||+. +++++-++-.|-
T Consensus 388 ----~~D~~IRv~dss~~sa~~~p~~~I~Hn~~ 416 (498)
T KOG4328|consen 388 ----CQDNEIRVFDSSCISAKDEPLGTIPHNNR 416 (498)
T ss_pred ----ccCCceEEeecccccccCCccceeeccCc
Confidence 67788888877 566666665554
No 175
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=98.72 E-value=6.3e-07 Score=106.31 Aligned_cols=258 Identities=14% Similarity=0.155 Sum_probs=164.1
Q ss_pred cEEEEEecCcceeeeEEEecccceeEEEEe--cCCeEEEecCCCeEEEEeccCcce--EEEeeeeecCCCCcccceeEEE
Q 000725 991 AVKIVKVKPGYVSVVAKLKTDDCVQCILVC--EPKHLIAVGESGKLHLWEMNSSWS--AQVEECIIPINDCIYPCIVEMK 1066 (1329)
Q Consensus 991 tVKIv~V~~G~vsll~kL~~h~sV~cIlVc--DpnhLVSaSdDGkL~IWDM~SgWs--m~tee~Vi~~n~~v~p~I~elK 1066 (1329)
.+-||+++-- ..+-..|..--.|.|+.+| +|++||.+..+|+|-+||...+-. +...- ....+|.-.+..+
T Consensus 223 ~~~vW~~~~p-~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls---~~~~sh~~~v~~v- 297 (555)
T KOG1587|consen 223 VLLVWSLKNP-NTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLS---ALEVSHSEPVTAV- 297 (555)
T ss_pred eEEEEecCCC-CCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccc---cccccCCcCeEEE-
Confidence 6778887765 3466677777999999999 999999999999999999877655 22222 1123355555555
Q ss_pred ecCCCC--CeeEecCCCccEEEEEccccceeeeeccCccceeEeccccccccccCcceEECcchhhhc--cccccccccC
Q 000725 1067 RIPKCA--PLVVGHNGFGEFGIWDISKRVLVSRFSAARASIYQFFPINLFSWQRNGSVSMDASLELTN--TATTSLFSKH 1142 (1329)
Q Consensus 1067 rFpkss--~lIVTgSGDgtf~LWDIskg~llqsF~ahs~sV~sfsP~~s~S~d~~v~tfd~~s~d~~l--eatv~~fSgd 1142 (1329)
.--++. +-++|+|-||.++.||+..-.+ +...... -+.. + . ..+... +++.
T Consensus 298 vW~~~~~~~~f~s~ssDG~i~~W~~~~l~~------P~e~~~~-~~~~--------~---~-~~~~~~~~~~t~------ 352 (555)
T KOG1587|consen 298 VWLQNEHNTEFFSLSSDGSICSWDTDMLSL------PVEGLLL-ESKK--------H---K-GQQSSKAVGATS------ 352 (555)
T ss_pred EEeccCCCCceEEEecCCcEeeeecccccc------chhhccc-cccc--------c---c-ccccccccceee------
Confidence 222233 4488888899999996554333 1111000 0000 0 0 000000 1222
Q ss_pred CCceeecCCCCccceEEEEeeccCccchh---hccc---------ccccCCCCcceeEEEeeeccceecCCCCCCCceee
Q 000725 1143 SEKSSFCPSVGEDSAIWLLVSTISDSDAQ---HNCM---------SRDCQKNPVRFWRLALLVKNRVILGSPLDPRASAI 1210 (1329)
Q Consensus 1143 vn~VsF~P~sGeD~AiwLLVST~Sdd~t~---~Dlr---------a~~~~gH~n~~wRLALl~K~siI~Gs~ldpra~af 1210 (1329)
+.|.| .| -.-++|||-.....- ++++ ...|..|.+.++. ..+
T Consensus 353 ---~~F~~---~~-p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~-------------------v~~ 406 (555)
T KOG1587|consen 353 ---LKFEP---TD-PNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYA-------------------VSR 406 (555)
T ss_pred ---Eeecc---CC-CceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEe-------------------eec
Confidence 33443 11 223444444333322 3333 2366777777776 556
Q ss_pred ecCCCeEEeecCCCeEEEEEcc-ccceeeeeecccCceEEEEEecCCCCceEEEecCCCCCCccccCCCCCCCC------
Q 000725 1211 GASSGLGIIGTNDGLVYAWELS-SGNKLGILHHFKGGTVSCIATDDSGLQALAVAGDGPDGGRRQRDPRHGQND------ 1283 (1329)
Q Consensus 1211 s~SG~~gfaGT~DGlVYmWDLs-tG~kL~tL~~Heg~rVSCVA~dps~p~~~AsA~d~~d~~~r~~~~~~s~D~------ 1283 (1329)
+|=+.-+|....|-+|.+|... .-.-+-.+..+.+ .|++||-+|+.|-++|++ +.||.|-|||-+-+..+
T Consensus 407 nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~-~v~~vaWSptrpavF~~~--d~~G~l~iWDLl~~~~~Pv~s~~ 483 (555)
T KOG1587|consen 407 NPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPD-YVTDVAWSPTRPAVFATV--DGDGNLDIWDLLQDDEEPVLSQK 483 (555)
T ss_pred CCCccceeeeeccceeEeccccCCCCcchhhhhccc-eeeeeEEcCcCceEEEEE--cCCCceehhhhhccccCCccccc
Confidence 6777777777779999999988 7788888889999 799999999999988888 46999999997655442
Q ss_pred ------cEEEeeeCCCcceeecCCCCcccc
Q 000725 1284 ------HVRIWKMDPNLGCVRNSNGDSKFK 1307 (1329)
Q Consensus 1284 ------~VRiW~~~~~~~~~~~~~~~~~~~ 1307 (1329)
+.+.|-+...+.++-+.+|+-.|-
T Consensus 484 ~~~~~l~~~~~s~~g~~lavGd~~G~~~~~ 513 (555)
T KOG1587|consen 484 VCSPALTRVRWSPNGKLLAVGDANGTTHIL 513 (555)
T ss_pred ccccccceeecCCCCcEEEEecCCCcEEEE
Confidence 234566656667777777765543
No 176
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=98.65 E-value=2.1e-07 Score=102.12 Aligned_cols=240 Identities=13% Similarity=0.124 Sum_probs=148.6
Q ss_pred EEEecc-cceeEEEEecCCeEEEecCCCeEEEEeccCcceEEEeeeeecCCCC-cccceeEEEecCCCCCeeEecCCCcc
Q 000725 1006 AKLKTD-DCVQCILVCEPKHLIAVGESGKLHLWEMNSSWSAQVEECIIPINDC-IYPCIVEMKRIPKCAPLVVGHNGFGE 1083 (1329)
Q Consensus 1006 ~kL~~h-~sV~cIlVcDpnhLVSaSdDGkL~IWDM~SgWsm~tee~Vi~~n~~-v~p~I~elKrFpkss~lIVTgSGDgt 1083 (1329)
--|.+| ..|.|+++-.+-+|.|+.+-|-|++|++.|-......+ . +.-+|..++.+|+ ..+.|.+-|++
T Consensus 8 fvLRp~~~~v~s~~fqa~~rL~sg~~~G~V~~w~lqt~r~~~~~r-------~~g~~~it~lq~~p~--d~l~tqgRd~~ 78 (323)
T KOG0322|consen 8 FVLRPHSSSVTSVLFQANERLMSGLSVGIVKMWVLQTERDLPLIR-------LFGRLFITNLQSIPN--DSLDTQGRDPL 78 (323)
T ss_pred eEeccccchheehhhccchhhhcccccceEEEEEeecCccchhhh-------hhccceeeceeecCC--cchhhcCCCce
Confidence 345588 99999999999999999999999999998865555554 4 5667777877887 56789999999
Q ss_pred EEEEEccccceeeeeccCccceeE--ecccc------------------------------------------------c
Q 000725 1084 FGIWDISKRVLVSRFSAARASIYQ--FFPIN------------------------------------------------L 1113 (1329)
Q Consensus 1084 f~LWDIskg~llqsF~ahs~sV~s--fsP~~------------------------------------------------s 1113 (1329)
+.+|+|..+..++. |+..|.+ |.|-+ +
T Consensus 79 L~lw~ia~s~~i~i---~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc 155 (323)
T KOG0322|consen 79 LILWTIAYSAFISI---HSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMC 155 (323)
T ss_pred EEEEEccCcceEEE---eeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceee
Confidence 99999999554332 1122211 22111 1
Q ss_pred ---------------cccccCcceEECcchhhhc--------cccccccccCCCceeecCCCCccceEEEEeeccCccch
Q 000725 1114 ---------------FSWQRNGSVSMDASLELTN--------TATTSLFSKHSEKSSFCPSVGEDSAIWLLVSTISDSDA 1170 (1329)
Q Consensus 1114 ---------------~S~d~~v~tfd~~s~d~~l--------eatv~~fSgdvn~VsF~P~sGeD~AiwLLVST~Sdd~t 1170 (1329)
+--.|.+-+||.+.+++.+ +-.++..+..+-++.|-+. .|-| .++.+.+...
T Consensus 156 ~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~--~~rG---isgga~dkl~ 230 (323)
T KOG0322|consen 156 QDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASS--CDRG---ISGGADDKLV 230 (323)
T ss_pred eeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechh--hcCC---cCCCccccce
Confidence 1123445555555554431 0001111111222333321 1111 1112222222
Q ss_pred hhcccccccCCCCcceeEEEeeeccceecCCCCCCCceeeecCCCeEEeecCCCeEEEEEccccceeeeeecccCceEEE
Q 000725 1171 QHNCMSRDCQKNPVRFWRLALLVKNRVILGSPLDPRASAIGASSGLGIIGTNDGLVYAWELSSGNKLGILHHFKGGTVSC 1250 (1329)
Q Consensus 1171 ~~Dlra~~~~gH~n~~wRLALl~K~siI~Gs~ldpra~afs~SG~~gfaGT~DGlVYmWDLstG~kL~tL~~Heg~rVSC 1250 (1329)
-|.+.-+. ..=.-|.-+-.|+-=+ .-+-+.+++..+++..-||.|.++--.|++-|..|..|.+ .|.|
T Consensus 231 ~~Sl~~s~----gslq~~~e~~lknpGv-------~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsa-gvn~ 298 (323)
T KOG0322|consen 231 MYSLNHST----GSLQIRKEITLKNPGV-------SGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSA-GVNA 298 (323)
T ss_pred eeeecccc----CcccccceEEecCCCc-------cceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhc-ceeE
Confidence 22222110 0000011111222222 2357889999999999999999999999999999999998 6999
Q ss_pred EEecCCCCceEEEecCCCCCCccccCCCCCCCCcEEEeee
Q 000725 1251 IATDDSGLQALAVAGDGPDGGRRQRDPRHGQNDHVRIWKM 1290 (1329)
Q Consensus 1251 VA~dps~p~~~AsA~d~~d~~~r~~~~~~s~D~~VRiW~~ 1290 (1329)
||++|.-+ .||.| |-|++|-+||.
T Consensus 299 vAfspd~~-lmAaa---------------skD~rISLWkL 322 (323)
T KOG0322|consen 299 VAFSPDCE-LMAAA---------------SKDARISLWKL 322 (323)
T ss_pred EEeCCCCc-hhhhc---------------cCCceEEeeec
Confidence 99996644 59999 89999999985
No 177
>PRK01742 tolB translocation protein TolB; Provisional
Probab=98.63 E-value=4.5e-07 Score=102.30 Aligned_cols=186 Identities=15% Similarity=0.134 Sum_probs=116.2
Q ss_pred ceeeecCCCcEEEEecCccCccccCCCccccccccccccCCCCcEEEEEecCcceeeeEEEecccceeEEEEe-cCCeEE
Q 000725 948 SCALFTPDGQYLVLLDSMKTPYCREGRSDCLCSTCTSHRLDENAVKIVKVKPGYVSVVAKLKTDDCVQCILVC-EPKHLI 1026 (1329)
Q Consensus 948 sglqFTPDGQ~LvLlgsik~p~CR~~~~dC~Cs~C~~s~seDNtVKIv~V~~G~vsll~kL~~h~sV~cIlVc-DpnhLV 1026 (1329)
..++|+|||++|++.+ ....+..|.+|++.+|....++.+.+|. .++.|. |.++|+
T Consensus 207 ~~p~wSPDG~~la~~s---------------------~~~~~~~i~i~dl~tg~~~~l~~~~g~~--~~~~wSPDG~~La 263 (429)
T PRK01742 207 MSPAWSPDGSKLAYVS---------------------FENKKSQLVVHDLRSGARKVVASFRGHN--GAPAFSPDGSRLA 263 (429)
T ss_pred ccceEcCCCCEEEEEE---------------------ecCCCcEEEEEeCCCCceEEEecCCCcc--CceeECCCCCEEE
Confidence 5789999999999432 1124568999999999877777777663 367888 999998
Q ss_pred Eec-CCCeEEEE--eccCcceEEEeeeeecCCCCcccceeEEEecCCCCCeeE-ecCCCccEEEEEccccc-eeeeeccC
Q 000725 1027 AVG-ESGKLHLW--EMNSSWSAQVEECIIPINDCIYPCIVEMKRIPKCAPLVV-GHNGFGEFGIWDISKRV-LVSRFSAA 1101 (1329)
Q Consensus 1027 SaS-dDGkL~IW--DM~SgWsm~tee~Vi~~n~~v~p~I~elKrFpkss~lIV-TgSGDgtf~LWDIskg~-llqsF~ah 1101 (1329)
.++ .+|...|| |+.++-..+. . . +...+.+. .|.+++..|+ +.+.+|...||++.... ....+ ++
T Consensus 264 ~~~~~~g~~~Iy~~d~~~~~~~~l-t----~---~~~~~~~~-~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~ 333 (429)
T PRK01742 264 FASSKDGVLNIYVMGANGGTPSQL-T----S---GAGNNTEP-SWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GG 333 (429)
T ss_pred EEEecCCcEEEEEEECCCCCeEee-c----c---CCCCcCCE-EECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cC
Confidence 765 68876665 5555543221 1 1 12234455 7888888655 55578899999885432 23333 33
Q ss_pred ccceeEecccc---ccccccCcceEECcchhhhccccccccccCCCceeecCCCCccceEEEEeeccCccchhhccc
Q 000725 1102 RASIYQFFPIN---LFSWQRNGSVSMDASLELTNTATTSLFSKHSEKSSFCPSVGEDSAIWLLVSTISDSDAQHNCM 1175 (1329)
Q Consensus 1102 s~sV~sfsP~~---s~S~d~~v~tfd~~s~d~~leatv~~fSgdvn~VsF~P~sGeD~AiwLLVST~Sdd~t~~Dlr 1175 (1329)
.....+++|++ .+.-...+-.|+..++...... .. + +...+.|+| | +.+|+.++.+.....|++.
T Consensus 334 ~~~~~~~SpDG~~ia~~~~~~i~~~Dl~~g~~~~lt-~~-~--~~~~~~~sP----d-G~~i~~~s~~g~~~~l~~~ 401 (429)
T PRK01742 334 RGYSAQISADGKTLVMINGDNVVKQDLTSGSTEVLS-ST-F--LDESPSISP----N-GIMIIYSSTQGLGKVLQLV 401 (429)
T ss_pred CCCCccCCCCCCEEEEEcCCCEEEEECCCCCeEEec-CC-C--CCCCceECC----C-CCEEEEEEcCCCceEEEEE
Confidence 33223489998 1221223444676665544211 11 1 235588999 7 7788888776666666654
No 178
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=98.60 E-value=8.9e-07 Score=99.03 Aligned_cols=205 Identities=13% Similarity=0.183 Sum_probs=139.8
Q ss_pred cceeEEEEe-cCCeEEEecCCCeEEEEeccCcceEEEeeeeecCCCCcccceeEEEecCCCCCeeEecCCCccEEEEEcc
Q 000725 1012 DCVQCILVC-EPKHLIAVGESGKLHLWEMNSSWSAQVEECIIPINDCIYPCIVEMKRIPKCAPLVVGHNGFGEFGIWDIS 1090 (1329)
Q Consensus 1012 ~sV~cIlVc-DpnhLVSaSdDGkL~IWDM~SgWsm~tee~Vi~~n~~v~p~I~elKrFpkss~lIVTgSGDgtf~LWDIs 1090 (1329)
+.-.|+-+. =+.||+.+--||+|-||||.|--..+++- .|-..|-+| ...++++.++|.|-|-.|++||+.
T Consensus 24 ~~a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~ls-------aH~~pi~sl-~WS~dgr~LltsS~D~si~lwDl~ 95 (405)
T KOG1273|consen 24 PLAECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLS-------AHVRPITSL-CWSRDGRKLLTSSRDWSIKLWDLL 95 (405)
T ss_pred CccceEEeccCcceeeeeccCCcEEEEEccccchhhhhh-------ccccceeEE-EecCCCCEeeeecCCceeEEEecc
Confidence 446788888 88999999999999999999865555555 788999999 999999999999999999999999
Q ss_pred ccceeeeeccCccceeE--eccccccccccCcceEECcchhhhccccccccccCCCceeecCCCCccceEEEEeeccCcc
Q 000725 1091 KRVLVSRFSAARASIYQ--FFPINLFSWQRNGSVSMDASLELTNTATTSLFSKHSEKSSFCPSVGEDSAIWLLVSTISDS 1168 (1329)
Q Consensus 1091 kg~llqsF~ahs~sV~s--fsP~~s~S~d~~v~tfd~~s~d~~leatv~~fSgdvn~VsF~P~sGeD~AiwLLVST~Sdd 1168 (1329)
+|.+++.|.=. +.|+. |-|-. .+.+...-.++. +.+--|+- -..+..| -|+
T Consensus 96 ~gs~l~rirf~-spv~~~q~hp~k-------~n~~va~~~~~s--p~vi~~s~--~~h~~Lp---------------~d~ 148 (405)
T KOG1273|consen 96 KGSPLKRIRFD-SPVWGAQWHPRK-------RNKCVATIMEES--PVVIDFSD--PKHSVLP---------------KDD 148 (405)
T ss_pred CCCceeEEEcc-Cccceeeecccc-------CCeEEEEEecCC--cEEEEecC--Cceeecc---------------CCC
Confidence 99999987632 33333 44432 244433333322 11111111 1122333 112
Q ss_pred chhhcccccccCCCCcceeEEEeeeccceecCCCCCCCceeeecCCCeEEeecCCCeEEEEEccccceeeeeecccCceE
Q 000725 1169 DAQHNCMSRDCQKNPVRFWRLALLVKNRVILGSPLDPRASAIGASSGLGIIGTNDGLVYAWELSSGNKLGILHHFKGGTV 1248 (1329)
Q Consensus 1169 ~t~~Dlra~~~~gH~n~~wRLALl~K~siI~Gs~ldpra~afs~SG~~gfaGT~DGlVYmWDLstG~kL~tL~~Heg~rV 1248 (1329)
+...|..+++ ..|...|.|+++|+..|.+.+.|..|-++++.+.--.-+.|
T Consensus 149 d~dln~sas~-----------------------------~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~I 199 (405)
T KOG1273|consen 149 DGDLNSSASH-----------------------------GVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAI 199 (405)
T ss_pred cccccccccc-----------------------------ccccCCCCEEEEecCcceEEEEecchheeeeeeeechheee
Confidence 2223333332 35788999999999999999999999988888765442346
Q ss_pred EEEEecCCCCceEEEecCCCCCCccccCCCCCCCCcEEEeeeCCCcce
Q 000725 1249 SCIATDDSGLQALAVAGDGPDGGRRQRDPRHGQNDHVRIWKMDPNLGC 1296 (1329)
Q Consensus 1249 SCVA~dps~p~~~AsA~d~~d~~~r~~~~~~s~D~~VRiW~~~~~~~~ 1296 (1329)
-.|.++-.+.. +++- .+|..||+|+...-+-|
T Consensus 200 K~I~~s~~g~~-liiN---------------tsDRvIR~ye~~di~~~ 231 (405)
T KOG1273|consen 200 KQIIVSRKGRF-LIIN---------------TSDRVIRTYEISDIDDE 231 (405)
T ss_pred eEEEEeccCcE-EEEe---------------cCCceEEEEehhhhccc
Confidence 66777744443 5555 57777777776644433
No 179
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=98.58 E-value=4.4e-07 Score=101.89 Aligned_cols=226 Identities=15% Similarity=0.181 Sum_probs=149.6
Q ss_pred ccCCCCcEEEEEecCcceeeeEEEeccc--ceeEEEEecCCeEEEec-----CCCeEEEEeccCcce-EEEeeeeecCCC
Q 000725 985 HRLDENAVKIVKVKPGYVSVVAKLKTDD--CVQCILVCEPKHLIAVG-----ESGKLHLWEMNSSWS-AQVEECIIPIND 1056 (1329)
Q Consensus 985 s~seDNtVKIv~V~~G~vsll~kL~~h~--sV~cIlVcDpnhLVSaS-----dDGkL~IWDM~SgWs-m~tee~Vi~~n~ 1056 (1329)
+|+-|++||.||+-+-.-..+...++|. ...|+...-+.+|+++| .|-.|.+||+..-=- |++++ .
T Consensus 89 s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~------e 162 (376)
T KOG1188|consen 89 SCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLN------E 162 (376)
T ss_pred EeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhh------h
Confidence 8999999999999887777888888986 66666665455566654 467799999766333 33332 3
Q ss_pred CcccceeEEEecCCCCCeeEecCCCccEEEEEccccc----eeeeeccCccceeE--e-ccc----cccccccCcceEEC
Q 000725 1057 CIYPCIVEMKRIPKCAPLVVGHNGFGEFGIWDISKRV----LVSRFSAARASIYQ--F-FPI----NLFSWQRNGSVSMD 1125 (1329)
Q Consensus 1057 ~v~p~I~elKrFpkss~lIVTgSGDgtf~LWDIskg~----llqsF~ahs~sV~s--f-sP~----~s~S~d~~v~tfd~ 1125 (1329)
-|.--|-.|+=.|++..+++|||-||-+.|+|+..-+ |+++|. |+.+|-. | +|. .+.+..++..+|..
T Consensus 163 SH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN-~~sSI~~igw~~~~ykrI~clTH~Etf~~~el 241 (376)
T KOG1188|consen 163 SHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVIN-HGSSIHLIGWLSKKYKRIMCLTHMETFAIYEL 241 (376)
T ss_pred hccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhc-ccceeeeeeeecCCcceEEEEEccCceeEEEc
Confidence 4666778885557778999999999999999998865 366665 4444544 2 222 36667777788887
Q ss_pred cchhhh--cccccccccc----CCCce-----eecCCCCccceEEEEeeccCccchhhcccccccCCCCcceeEEEeeec
Q 000725 1126 ASLELT--NTATTSLFSK----HSEKS-----SFCPSVGEDSAIWLLVSTISDSDAQHNCMSRDCQKNPVRFWRLALLVK 1194 (1329)
Q Consensus 1126 ~s~d~~--leatv~~fSg----dvn~V-----sF~P~sGeD~AiwLLVST~Sdd~t~~Dlra~~~~gH~n~~wRLALl~K 1194 (1329)
..+++. ++ ++.|+. +.+++ .+.| +|.+.|.|.+|.....++|=+...+ ...++..
T Consensus 242 e~~~~~~~~~--~~~~~~~d~r~~~~~dY~I~~~~~---~~~~~~~l~g~~~n~~~~~~~~~~~---------s~~~~~~ 307 (376)
T KOG1188|consen 242 EDGSEETWLE--NPDVSADDLRKEDNCDYVINEHSP---GDKDTCALAGTDSNKGTIFPLVDTS---------SGSLLTE 307 (376)
T ss_pred cCCChhhccc--CccchhhhHHhhhhhhheeecccC---CCcceEEEeccccCceeEEEeeecc---------cccccCc
Confidence 777765 22 222222 11221 1335 5678999999988888875444211 1112222
Q ss_pred cceecC-CCCCCCceeeecCCCeEEeecCCCeEEEEEc
Q 000725 1195 NRVILG-SPLDPRASAIGASSGLGIIGTNDGLVYAWEL 1231 (1329)
Q Consensus 1195 ~siI~G-s~ldpra~afs~SG~~gfaGT~DGlVYmWDL 1231 (1329)
..+.=| .+===|...|.+-+..+++|.+||+|.+|..
T Consensus 308 ~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 308 PAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred cccccCCcHHHHHHHhhhcccceeeccCCCceEEEEec
Confidence 222222 1001156778888999999999999999997
No 180
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=98.58 E-value=4.8e-07 Score=101.31 Aligned_cols=239 Identities=14% Similarity=0.134 Sum_probs=163.4
Q ss_pred eeEEEEe-cCCeEEEecCCCeEEEEeccCcceEEEeeeee----------cCCCCcccceeE--EEecCCCCCeeEecCC
Q 000725 1014 VQCILVC-EPKHLIAVGESGKLHLWEMNSSWSAQVEECII----------PINDCIYPCIVE--MKRIPKCAPLVVGHNG 1080 (1329)
Q Consensus 1014 V~cIlVc-DpnhLVSaSdDGkL~IWDM~SgWsm~tee~Vi----------~~n~~v~p~I~e--lKrFpkss~lIVTgSG 1080 (1329)
....-|+ |..-|.+-++|-.|++|.|+..---+.+.... +.-.-|+.+++= +|.--++..+++.-+-
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr 131 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR 131 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence 4455677 88888999999999999988743333322111 111113333322 2445677899999999
Q ss_pred CccEEEEEccccceeeeecc--Ccccee-----Eecccc---ccccccCcceEEC-cchhhh--c---cccccccccCCC
Q 000725 1081 FGEFGIWDISKRVLVSRFSA--ARASIY-----QFFPIN---LFSWQRNGSVSMD-ASLELT--N---TATTSLFSKHSE 1144 (1329)
Q Consensus 1081 Dgtf~LWDIskg~llqsF~a--hs~sV~-----sfsP~~---s~S~d~~v~tfd~-~s~d~~--l---eatv~~fSgdvn 1144 (1329)
|.-|.|||--+|.+-.+|+| |-+-++ +|+|++ .+-+.+.||+|++ +.+... + ..-+..-.+=+.
T Consensus 132 ~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giis 211 (406)
T KOG2919|consen 132 DQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIIS 211 (406)
T ss_pred cCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhcccccccceee
Confidence 99999999999999999986 333333 499999 6678889999999 443333 1 111222233233
Q ss_pred ceeecCCCCccceEEEEeeccCcc--chhhccc--ccccCCCCcceeEEEeeeccceecCCCCCCCceeeecCCCeEEee
Q 000725 1145 KSSFCPSVGEDSAIWLLVSTISDS--DAQHNCM--SRDCQKNPVRFWRLALLVKNRVILGSPLDPRASAIGASSGLGIIG 1220 (1329)
Q Consensus 1145 ~VsF~P~sGeD~AiwLLVST~Sdd--~t~~Dlr--a~~~~gH~n~~wRLALl~K~siI~Gs~ldpra~afs~SG~~gfaG 1220 (1329)
-.+|+|. + ...+-|++-... ++++|-+ +....||.+++-. .++...|+++|+|
T Consensus 212 c~a~sP~---~-~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvTh-------------------L~~~edGn~lfsG 268 (406)
T KOG2919|consen 212 CFAFSPM---D-SKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTH-------------------LQWCEDGNKLFSG 268 (406)
T ss_pred eeeccCC---C-CcceeeecccceeeeEecCCCCceeeecccCCCeee-------------------EEeccCcCeeccc
Confidence 3789992 4 667888876654 4445555 6666799999888 5578899999999
Q ss_pred cC-CCeEEEEEccc-cceeeeeeccc---CceEEEEEecCCCCceEEEecCCCCCCccccCCCCCCCCcEEEeeeCC
Q 000725 1221 TN-DGLVYAWELSS-GNKLGILHHFK---GGTVSCIATDDSGLQALAVAGDGPDGGRRQRDPRHGQNDHVRIWKMDP 1292 (1329)
Q Consensus 1221 T~-DGlVYmWDLst-G~kL~tL~~He---g~rVSCVA~dps~p~~~AsA~d~~d~~~r~~~~~~s~D~~VRiW~~~~ 1292 (1329)
.- |-.|-.||+-. +..|-.|+.|. |+|| =..++|++.. +|++ ++||.||+|+.+.
T Consensus 269 aRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI-~FDld~~~~~-LasG---------------~tdG~V~vwdlk~ 328 (406)
T KOG2919|consen 269 ARKDDKILCWDIRYSRDPVYALERHVGDTNQRI-LFDLDPKGEI-LASG---------------DTDGSVRVWDLKD 328 (406)
T ss_pred ccCCCeEEEEeehhccchhhhhhhhccCccceE-EEecCCCCce-eecc---------------CCCccEEEEecCC
Confidence 86 67899999964 56677788774 4665 3455655555 5555 6788888888765
No 181
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.58 E-value=4.7e-07 Score=103.16 Aligned_cols=216 Identities=16% Similarity=0.204 Sum_probs=139.0
Q ss_pred eeeEEEecccceeEEEEe-cCCeEEEecCCCeEEEEeccCcceEEEeeeeecCCCCcccceeEEEecCCCCCeeEecCCC
Q 000725 1003 SVVAKLKTDDCVQCILVC-EPKHLIAVGESGKLHLWEMNSSWSAQVEECIIPINDCIYPCIVEMKRIPKCAPLVVGHNGF 1081 (1329)
Q Consensus 1003 sll~kL~~h~sV~cIlVc-DpnhLVSaSdDGkL~IWDM~SgWsm~tee~Vi~~n~~v~p~I~elKrFpkss~lIVTgSGD 1081 (1329)
+++++|.-.+.=.+|++. |..+|.+++.||+|+||+.++--.+-.|- =|...|-+| .|.+++..|++=++|
T Consensus 136 ~v~~~l~~~g~~k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~-------~~~~eV~DL-~FS~dgk~lasig~d 207 (398)
T KOG0771|consen 136 NVYQKLVDFGQQKVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEI-------AHHAEVKDL-DFSPDGKFLASIGAD 207 (398)
T ss_pred hHhHHHhhcCcceEEEEcCCCCEeeeccccceEEEEecCcchhhhhhH-------hhcCccccc-eeCCCCcEEEEecCC
Confidence 467777766444888888 99999999999999999977743333333 477778888 999999999999999
Q ss_pred ccEEEEEccccceeeeeccCccceeEeccccccccccCcceEECcchhhhccccccccccCCCceeecCCCCc-cceEEE
Q 000725 1082 GEFGIWDISKRVLVSRFSAARASIYQFFPINLFSWQRNGSVSMDASLELTNTATTSLFSKHSEKSSFCPSVGE-DSAIWL 1160 (1329)
Q Consensus 1082 gtf~LWDIskg~llqsF~ahs~sV~sfsP~~s~S~d~~v~tfd~~s~d~~leatv~~fSgdvn~VsF~P~sGe-D~AiwL 1160 (1329)
.+++||+.+|.++++-..-+.+ . .|+. ++|.- .+. + ...|
T Consensus 208 -~~~VW~~~~g~~~a~~t~~~k~-------~-------------------------~~~~----cRF~~-d~~~~-~l~l 248 (398)
T KOG0771|consen 208 -SARVWSVNTGAALARKTPFSKD-------E-------------------------MFSS----CRFSV-DNAQE-TLRL 248 (398)
T ss_pred -ceEEEEeccCchhhhcCCcccc-------h-------------------------hhhh----ceecc-cCCCc-eEEE
Confidence 9999999999887776632221 1 0111 22322 000 0 0001
Q ss_pred Eeecc-CccchhhcccccccCCCCcceeEEEeeeccceec-CCCCCCCceeeecCCCeEEeecCCCeEEEEEccccceee
Q 000725 1161 LVSTI-SDSDAQHNCMSRDCQKNPVRFWRLALLVKNRVIL-GSPLDPRASAIGASSGLGIIGTNDGLVYAWELSSGNKLG 1238 (1329)
Q Consensus 1161 LVST~-Sdd~t~~Dlra~~~~gH~n~~wRLALl~K~siI~-Gs~ldpra~afs~SG~~gfaGT~DGlVYmWDLstG~kL~ 1238 (1329)
+.++. ..-..++|+.+.. .+..-++ .|..-.+ +- .+.+++.+|++++-||.||.|-|.|.-+-+++.
T Consensus 249 aa~~~~~~~v~~~~~~~w~----~~~~l~~---~~~~~~~~si----Ssl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~ 317 (398)
T KOG0771|consen 249 AASQFPGGGVRLCDISLWS----GSNFLRL---RKKIKRFKSI----SSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQ 317 (398)
T ss_pred EEecCCCCceeEEEeeeec----cccccch---hhhhhccCcc----eeEEEcCCCcEEEEeccCCcEEEEEeceeeeeE
Confidence 10000 0011112222221 0000011 1222222 22 568899999999999999999999998888877
Q ss_pred ee-ecccCceEEEEEecCCCCceEEEecCCCCCCccccCCCCCCCCcEEEeeeCCC
Q 000725 1239 IL-HHFKGGTVSCIATDDSGLQALAVAGDGPDGGRRQRDPRHGQNDHVRIWKMDPN 1293 (1329)
Q Consensus 1239 tL-~~Heg~rVSCVA~dps~p~~~AsA~d~~d~~~r~~~~~~s~D~~VRiW~~~~~ 1293 (1329)
-. ++|.+ .|+.|+++|+... +++- |.|.+.+|-+..-+
T Consensus 318 ~vk~aH~~-~VT~ltF~Pdsr~-~~sv---------------Ss~~~~~v~~l~vd 356 (398)
T KOG0771|consen 318 YVKEAHLG-FVTGLTFSPDSRY-LASV---------------SSDNEAAVTKLAVD 356 (398)
T ss_pred eehhhhee-eeeeEEEcCCcCc-cccc---------------ccCCceeEEEEeec
Confidence 76 68888 9999999986554 6654 55666666665543
No 182
>PRK03629 tolB translocation protein TolB; Provisional
Probab=98.57 E-value=4e-06 Score=95.14 Aligned_cols=264 Identities=10% Similarity=0.053 Sum_probs=156.1
Q ss_pred cccccccccccccccccceee--ecCCCcEEEEecCccCccccCCCccccccccccccCCCCcEEEEEecCcceeeeEEE
Q 000725 931 MLPFLKDNFGREIALERSCAL--FTPDGQYLVLLDSMKTPYCREGRSDCLCSTCTSHRLDENAVKIVKVKPGYVSVVAKL 1008 (1329)
Q Consensus 931 llp~~~~~~~~~~~~ersglq--FTPDGQ~LvLlgsik~p~CR~~~~dC~Cs~C~~s~seDNtVKIv~V~~G~vsll~kL 1008 (1329)
-++..-+.+.-++.-..+|.. |. ..++++-.... ......|.+|+...++. +.|
T Consensus 139 ~~r~~ah~~~d~i~~~ltg~~g~f~---~riayv~~~~~------------------~~~~~~l~~~d~dg~~~---~~l 194 (429)
T PRK03629 139 WLRYAAHTASDEVFEKLTGIKGAFR---TRIAYVVQTNG------------------GQFPYELRVSDYDGYNQ---FVV 194 (429)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCccC---CeEEEEEeeCC------------------CCcceeEEEEcCCCCCC---EEe
Confidence 456666666666654445544 43 34554322110 01134688899887763 333
Q ss_pred ecc-cceeEEEEe-cCCeEEEec---CCCeEEEEeccCcceEEEeeeeecCCCCcccceeEEEecCCCCCeeE-ec--CC
Q 000725 1009 KTD-DCVQCILVC-EPKHLIAVG---ESGKLHLWEMNSSWSAQVEECIIPINDCIYPCIVEMKRIPKCAPLVV-GH--NG 1080 (1329)
Q Consensus 1009 ~~h-~sV~cIlVc-DpnhLVSaS---dDGkL~IWDM~SgWsm~tee~Vi~~n~~v~p~I~elKrFpkss~lIV-Tg--SG 1080 (1329)
..+ ..+.+..|+ |.++|+-++ .+..|++||+.+|-...... .+++ ...+ +|.+++..|+ +. ++
T Consensus 195 t~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~-----~~~~---~~~~-~~SPDG~~La~~~~~~g 265 (429)
T PRK03629 195 HRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVAS-----FPRH---NGAP-AFSPDGSKLAFALSKTG 265 (429)
T ss_pred ecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccC-----CCCC---cCCe-EECCCCCEEEEEEcCCC
Confidence 344 688999999 999998664 34689999999875433322 1121 1234 7888888776 33 44
Q ss_pred CccEEEEEccccceeeeeccCccceeE--ecccc---ccccc--cCcceEE--CcchhhhccccccccccCCCceeecCC
Q 000725 1081 FGEFGIWDISKRVLVSRFSAARASIYQ--FFPIN---LFSWQ--RNGSVSM--DASLELTNTATTSLFSKHSEKSSFCPS 1151 (1329)
Q Consensus 1081 Dgtf~LWDIskg~llqsF~ahs~sV~s--fsP~~---s~S~d--~~v~tfd--~~s~d~~leatv~~fSgdvn~VsF~P~ 1151 (1329)
...+.+||+.++++.+-...+.. +.+ |+|++ .|..+ +..++|. ..+++.++. .+-.+......|+|
T Consensus 266 ~~~I~~~d~~tg~~~~lt~~~~~-~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~l---t~~~~~~~~~~~Sp- 340 (429)
T PRK03629 266 SLNLYVMDLASGQIRQVTDGRSN-NTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRI---TWEGSQNQDADVSS- 340 (429)
T ss_pred CcEEEEEECCCCCEEEccCCCCC-cCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEe---ecCCCCccCEEECC-
Confidence 45689999999988666555433 333 99998 23333 3345553 333333221 00011223488999
Q ss_pred CCccceEEEEeeccCcc---chhhcccccccCCCCcceeEEEeeeccceecCCCCCCCceeeecCCCeEEeecCCCe---
Q 000725 1152 VGEDSAIWLLVSTISDS---DAQHNCMSRDCQKNPVRFWRLALLVKNRVILGSPLDPRASAIGASSGLGIIGTNDGL--- 1225 (1329)
Q Consensus 1152 sGeD~AiwLLVST~Sdd---~t~~Dlra~~~~gH~n~~wRLALl~K~siI~Gs~ldpra~afs~SG~~gfaGT~DGl--- 1225 (1329)
| +.+|+..+..+. ...+|+.... . + .|+.. + .| ....++++|++++..+.|+.
T Consensus 341 ---D-G~~Ia~~~~~~g~~~I~~~dl~~g~-------~-~--~Lt~~----~--~~-~~p~~SpDG~~i~~~s~~~~~~~ 399 (429)
T PRK03629 341 ---D-GKFMVMVSSNGGQQHIAKQDLATGG-------V-Q--VLTDT----F--LD-ETPSIAPNGTMVIYSSSQGMGSV 399 (429)
T ss_pred ---C-CCEEEEEEccCCCceEEEEECCCCC-------e-E--EeCCC----C--CC-CCceECCCCCEEEEEEcCCCceE
Confidence 6 677765443322 2234443221 1 1 22221 1 11 24579999999999998875
Q ss_pred EEEEEccccceeeeeecccCceEEEEEecC
Q 000725 1226 VYAWELSSGNKLGILHHFKGGTVSCIATDD 1255 (1329)
Q Consensus 1226 VYmWDLstG~kL~tL~~Heg~rVSCVA~dp 1255 (1329)
+|+|++ +|+....|.+|.+ .|+..+.+|
T Consensus 400 l~~~~~-~G~~~~~l~~~~~-~~~~p~Wsp 427 (429)
T PRK03629 400 LNLVST-DGRFKARLPATDG-QVKFPAWSP 427 (429)
T ss_pred EEEEEC-CCCCeEECccCCC-CcCCcccCC
Confidence 788887 7888888999988 677766664
No 183
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=98.57 E-value=2.8e-06 Score=98.21 Aligned_cols=268 Identities=12% Similarity=0.117 Sum_probs=178.0
Q ss_pred CcEEEEEecCcceeeeEEEecccceeEEEEe-cCCeEEEecCCCeEEEEeccCc--ceEEEeeeeecCCCCcccceeEEE
Q 000725 990 NAVKIVKVKPGYVSVVAKLKTDDCVQCILVC-EPKHLIAVGESGKLHLWEMNSS--WSAQVEECIIPINDCIYPCIVEMK 1066 (1329)
Q Consensus 990 NtVKIv~V~~G~vsll~kL~~h~sV~cIlVc-DpnhLVSaSdDGkL~IWDM~Sg--Wsm~tee~Vi~~n~~v~p~I~elK 1066 (1329)
|+.|+.|.+-+. -+|..++||-+- -..-|.+||.||+|.|+-+.-. -.++..++ ..-.|...
T Consensus 199 ~~krlkDaNa~~-------ps~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l-------~~fPi~~a- 263 (514)
T KOG2055|consen 199 NIKRLKDANAAH-------PSHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHL-------EKFPIQKA- 263 (514)
T ss_pred eeEeecccccCC-------cCcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeee-------ccCcccee-
Confidence 455555655554 356889999998 6677888999999999985321 12333331 22234444
Q ss_pred ecCCCCC-eeEecCCCccEEEEEccccce--eeeeccCccce---eEecccccc----ccccCcceEECcchhhhccccc
Q 000725 1067 RIPKCAP-LVVGHNGFGEFGIWDISKRVL--VSRFSAARASI---YQFFPINLF----SWQRNGSVSMDASLELTNTATT 1136 (1329)
Q Consensus 1067 rFpkss~-lIVTgSGDgtf~LWDIskg~l--lqsF~ahs~sV---~sfsP~~s~----S~d~~v~tfd~~s~d~~leatv 1136 (1329)
+|.++++ .|++++-...+-.||+++++. ++...|+--.. |.++|++.| ---|.|++...-+.+.. +.
T Consensus 264 ~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli---~s 340 (514)
T KOG2055|consen 264 EFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELI---TS 340 (514)
T ss_pred eecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhh---he
Confidence 7888899 999999999999999999987 55555554333 336788721 22344555555555544 11
Q ss_pred cccccCCCceeecCCCCccceEEEEeeccCccchhhcccccccCCCCcceeEEEeeeccceecCCCCCCCceeeecCCCe
Q 000725 1137 SLFSKHSEKSSFCPSVGEDSAIWLLVSTISDSDAQHNCMSRDCQKNPVRFWRLALLVKNRVILGSPLDPRASAIGASSGL 1216 (1329)
Q Consensus 1137 ~~fSgdvn~VsF~P~sGeD~AiwLLVST~Sdd~t~~Dlra~~~~gH~n~~wRLALl~K~siI~Gs~ldpra~afs~SG~~ 1216 (1329)
.-..|.+-.+.|+- | +.-||++....-...||++... ...+|. -+.-+-| +..|++..|.|
T Consensus 341 ~KieG~v~~~~fsS----d-sk~l~~~~~~GeV~v~nl~~~~----~~~rf~-----D~G~v~g-----ts~~~S~ng~y 401 (514)
T KOG2055|consen 341 FKIEGVVSDFTFSS----D-SKELLASGGTGEVYVWNLRQNS----CLHRFV-----DDGSVHG-----TSLCISLNGSY 401 (514)
T ss_pred eeeccEEeeEEEec----C-CcEEEEEcCCceEEEEecCCcc----eEEEEe-----ecCccce-----eeeeecCCCce
Confidence 11223333377884 6 6888888888888889999774 444454 2333333 47899999999
Q ss_pred EEeecCCCeEEEEEccccc------eeeeeecccCceEEEEEecCCCCceEEEecCCCCCCccc-----------cCCCC
Q 000725 1217 GIIGTNDGLVYAWELSSGN------KLGILHHFKGGTVSCIATDDSGLQALAVAGDGPDGGRRQ-----------RDPRH 1279 (1329)
Q Consensus 1217 gfaGT~DGlVYmWDLstG~------kL~tL~~Heg~rVSCVA~dps~p~~~AsA~d~~d~~~r~-----------~~~~~ 1279 (1329)
+++||+-|.|+++|..+.. -+.++..-.- .|+.++++++... +|+|+..-+..+|. |-++-
T Consensus 402 lA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt-~Itsl~Fn~d~qi-LAiaS~~~knalrLVHvPS~TVFsNfP~~n 479 (514)
T KOG2055|consen 402 LATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTT-AITSLQFNHDAQI-LAIASRVKKNALRLVHVPSCTVFSNFPTSN 479 (514)
T ss_pred EEeccCcceEEEeccchhhccCCCCchhhhhhhhe-eeeeeeeCcchhh-hhhhhhccccceEEEeccceeeeccCCCCC
Confidence 9999999999999965542 2333333333 4778888876666 88888777777664 55554
Q ss_pred CCCCcEEEeeeCCCcce
Q 000725 1280 GQNDHVRIWKMDPNLGC 1296 (1329)
Q Consensus 1280 s~D~~VRiW~~~~~~~~ 1296 (1329)
+.=+|||--..-|+-|-
T Consensus 480 ~~vg~vtc~aFSP~sG~ 496 (514)
T KOG2055|consen 480 TKVGHVTCMAFSPNSGY 496 (514)
T ss_pred CcccceEEEEecCCCce
Confidence 44477888787787663
No 184
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=98.55 E-value=1.3e-06 Score=90.00 Aligned_cols=140 Identities=14% Similarity=0.165 Sum_probs=97.0
Q ss_pred cceeeecCCCcEEEEecCccCccccCCCccccccccccccCCCCcEEEEEe--cCcceeeeEEEecccceeEEEEe-cCC
Q 000725 947 RSCALFTPDGQYLVLLDSMKTPYCREGRSDCLCSTCTSHRLDENAVKIVKV--KPGYVSVVAKLKTDDCVQCILVC-EPK 1023 (1329)
Q Consensus 947 rsglqFTPDGQ~LvLlgsik~p~CR~~~~dC~Cs~C~~s~seDNtVKIv~V--~~G~vsll~kL~~h~sV~cIlVc-Dpn 1023 (1329)
.-.+.|.|+|.+|+++-..+.. ++..+.=....|+-+ +.+. .....|+..+.|++|.|. +.+
T Consensus 8 ~~~~~W~~~G~~l~~~~~~~~~--------------~~~ks~~~~~~l~~~~~~~~~-~~~i~l~~~~~I~~~~WsP~g~ 72 (194)
T PF08662_consen 8 DAKLHWQPSGDYLLVKVQTRVD--------------KSGKSYYGEFELFYLNEKNIP-VESIELKKEGPIHDVAWSPNGN 72 (194)
T ss_pred eEEEEecccCCEEEEEEEEeec--------------cCcceEEeeEEEEEEecCCCc-cceeeccCCCceEEEEECcCCC
Confidence 4457889999999977664433 112222234555555 3333 233344555679999999 888
Q ss_pred eEE--EecCCCeEEEEeccCcceEEEeeeeecCCCCcccceeEEEecCCCCCeeEecCC---CccEEEEEccccceeeee
Q 000725 1024 HLI--AVGESGKLHLWEMNSSWSAQVEECIIPINDCIYPCIVEMKRIPKCAPLVVGHNG---FGEFGIWDISKRVLVSRF 1098 (1329)
Q Consensus 1024 hLV--SaSdDGkL~IWDM~SgWsm~tee~Vi~~n~~v~p~I~elKrFpkss~lIVTgSG---Dgtf~LWDIskg~llqsF 1098 (1329)
+++ ++..++++.+||+.. ..... .....+..+ .|.+.+++|+.++. .|.+.+||+.+.+.+.++
T Consensus 73 ~favi~g~~~~~v~lyd~~~---~~i~~-------~~~~~~n~i-~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~ 141 (194)
T PF08662_consen 73 EFAVIYGSMPAKVTLYDVKG---KKIFS-------FGTQPRNTI-SWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTF 141 (194)
T ss_pred EEEEEEccCCcccEEEcCcc---cEeEe-------ecCCCceEE-EECCCCCEEEEEEccCCCcEEEEEECCCCEEeecc
Confidence 854 344678999999972 11122 112345667 89999999998764 467999999999999999
Q ss_pred ccCccceeEecccc
Q 000725 1099 SAARASIYQFFPIN 1112 (1329)
Q Consensus 1099 ~ahs~sV~sfsP~~ 1112 (1329)
+.+.....+++|+|
T Consensus 142 ~~~~~t~~~WsPdG 155 (194)
T PF08662_consen 142 EHSDATDVEWSPDG 155 (194)
T ss_pred ccCcEEEEEEcCCC
Confidence 98887777799999
No 185
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=98.53 E-value=2.6e-06 Score=94.77 Aligned_cols=283 Identities=16% Similarity=0.131 Sum_probs=183.5
Q ss_pred ccccccccccccccccccceeeec--CCCcEEEEecCccCccccCCCccccccccccccCCCCcEEEEEecCcceeeeEE
Q 000725 930 VMLPFLKDNFGREIALERSCALFT--PDGQYLVLLDSMKTPYCREGRSDCLCSTCTSHRLDENAVKIVKVKPGYVSVVAK 1007 (1329)
Q Consensus 930 ~llp~~~~~~~~~~~~ersglqFT--PDGQ~LvLlgsik~p~CR~~~~dC~Cs~C~~s~seDNtVKIv~V~~G~vsll~k 1007 (1329)
...|..++.++-+.+.-..++.|+ ||-.+=+-+||+.--| -|.|-|++...-.-+++.+
T Consensus 30 ~~~~r~~eiy~Y~ap~~lya~~Ws~~~~~~~rla~gS~~Ee~-------------------~Nkvqiv~ld~~s~e~~~~ 90 (364)
T KOG0290|consen 30 EGNPRRKEIYTYNAPWPLYAMNWSVRPDKKFRLAVGSFIEEY-------------------NNKVQIVQLDEDSGELVED 90 (364)
T ss_pred ccCcccceEEEecCCCceeeeccccCCCcceeEEEeeecccc-------------------CCeeEEEEEccCCCceecc
Confidence 345566677777777777777775 7877777789887553 2899999987655455544
Q ss_pred E-ecc-cceeEEEEe-cC-----CeEEEecCCCeEEEEeccCcceEEEeeeeecCCCC-ccc-ceeEEEecC-CCCCeeE
Q 000725 1008 L-KTD-DCVQCILVC-EP-----KHLIAVGESGKLHLWEMNSSWSAQVEECIIPINDC-IYP-CIVEMKRIP-KCAPLVV 1076 (1329)
Q Consensus 1008 L-~~h-~sV~cIlVc-Dp-----nhLVSaSdDGkL~IWDM~SgWsm~tee~Vi~~n~~-v~p-~I~elKrFp-kss~lIV 1076 (1329)
- +-| +.+.-|.|. |+ ..|+|+|| .|++|.+..--+--..+.+...|+. .+. .+-.. -.+ -+..+|.
T Consensus 91 a~fd~~YP~tK~~wiPd~~g~~pdlLATs~D--~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSF-DWne~dp~~ig 167 (364)
T KOG0290|consen 91 ANFDHPYPVTKLMWIPDSKGVYPDLLATSSD--FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSF-DWNEVDPNLIG 167 (364)
T ss_pred CCCCCCCCccceEecCCccccCcchhhcccC--eEEEEeccCcCCceehhhhhccCcccccCCccccc-ccccCCcceeE
Confidence 3 344 899999998 54 56777664 7999998754333333333333332 111 11110 011 1468999
Q ss_pred ecCCCccEEEEEccccce---eeeeccCccceeE--ecccc-----ccccccCcceEECcchhhh--c-c--cccccccc
Q 000725 1077 GHNGFGEFGIWDISKRVL---VSRFSAARASIYQ--FFPIN-----LFSWQRNGSVSMDASLELT--N-T--ATTSLFSK 1141 (1329)
Q Consensus 1077 TgSGDgtf~LWDIskg~l---lqsF~ahs~sV~s--fsP~~-----s~S~d~~v~tfd~~s~d~~--l-e--atv~~fSg 1141 (1329)
+.|-|-||.||||++|+- -.-+-||-..||- |...+ +..-||.+|+||+++.|-. . | ++..+.-+
T Consensus 168 tSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlR 247 (364)
T KOG0290|consen 168 TSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLR 247 (364)
T ss_pred eecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCccee
Confidence 999999999999999843 2335689999998 77754 7788999999999988766 1 2 21222222
Q ss_pred ------CCCceeecCCCCccceEEEEeeccCccchhhccc-----ccccCCCCcceeEEEeeeccceecCCCCCCCceee
Q 000725 1142 ------HSEKSSFCPSVGEDSAIWLLVSTISDSDAQHNCM-----SRDCQKNPVRFWRLALLVKNRVILGSPLDPRASAI 1210 (1329)
Q Consensus 1142 ------dvn~VsF~P~sGeD~AiwLLVST~Sdd~t~~Dlr-----a~~~~gH~n~~wRLALl~K~siI~Gs~ldpra~af 1210 (1329)
|.|..+. || -.|...-..|+| .-+.++|...+=-+|- .
T Consensus 248 LswnkqDpnymAT-------f~------~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaW------------------a 296 (364)
T KOG0290|consen 248 LSWNKQDPNYMAT-------FA------MDSNKVVILDIRVPCTPVARLRNHQASVNGIAW------------------A 296 (364)
T ss_pred eccCcCCchHHhh-------hh------cCCceEEEEEecCCCcceehhhcCcccccceEe------------------c
Confidence 2222111 11 344555557888 2334455444333221 1
Q ss_pred ecCCCeEEeecCCCeEEEEEccccce----eeee-ecccCceEEEEEecCCCCceEEEecC
Q 000725 1211 GASSGLGIIGTNDGLVYAWELSSGNK----LGIL-HHFKGGTVSCIATDDSGLQALAVAGD 1266 (1329)
Q Consensus 1211 s~SG~~gfaGT~DGlVYmWDLstG~k----L~tL-~~Heg~rVSCVA~dps~p~~~AsA~d 1266 (1329)
=-|+.|+.++..|.-+-+|||.+--+ -..| +. .++.|--|+-++++|+.+|+|.+
T Consensus 297 PhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~-a~~EVNqi~Ws~~~~Dwiai~~~ 356 (364)
T KOG0290|consen 297 PHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT-AGGEVNQIQWSSSQPDWIAICFG 356 (364)
T ss_pred CCCCceeeecCCcceEEEEecccccccCCCCchhhhh-ccceeeeeeecccCCCEEEEEec
Confidence 24678999999999999999987555 1122 33 44489999999999999999954
No 186
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=98.53 E-value=1.3e-06 Score=99.62 Aligned_cols=214 Identities=14% Similarity=0.102 Sum_probs=135.3
Q ss_pred ecCcce-eeeEEEecc-cceeEEEEe--cCCeEEEecCCCeEEEEeccCcceEEEeeeeecCCCCcccceeEEEecCCCC
Q 000725 997 VKPGYV-SVVAKLKTD-DCVQCILVC--EPKHLIAVGESGKLHLWEMNSSWSAQVEECIIPINDCIYPCIVEMKRIPKCA 1072 (1329)
Q Consensus 997 V~~G~v-sll~kL~~h-~sV~cIlVc--DpnhLVSaSdDGkL~IWDM~SgWsm~tee~Vi~~n~~v~p~I~elKrFpkss 1072 (1329)
.++|.+ .-.-++-|| +.|.+|.|| +-+.|+|+|+|-+|.||.++-.-..+...--+-.-.+|...+--+-=-|-..
T Consensus 65 ~k~Gr~d~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~ 144 (472)
T KOG0303|consen 65 VKTGRMDASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAP 144 (472)
T ss_pred ccccccCCCCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccch
Confidence 345543 233467789 999999999 8889999999999999996654333322200000004444443331234556
Q ss_pred CeeEecCCCccEEEEEccccceeeeeccCccceeE--ecccc----ccccccCcceEECcchhhhccccccccccCCCce
Q 000725 1073 PLVVGHNGFGEFGIWDISKRVLVSRFSAARASIYQ--FFPIN----LFSWQRNGSVSMDASLELTNTATTSLFSKHSEKS 1146 (1329)
Q Consensus 1073 ~lIVTgSGDgtf~LWDIskg~llqsF~ahs~sV~s--fsP~~----s~S~d~~v~tfd~~s~d~~leatv~~fSgdvn~V 1146 (1329)
+.++|.++|-++.|||+.+|..+-++. |-+-|++ |+-+| +-.=|..||+|+-+.++..-++ ++..|
T Consensus 145 NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~--~~heG----- 216 (472)
T KOG0303|consen 145 NVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEG--VAHEG----- 216 (472)
T ss_pred hhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeec--ccccC-----
Confidence 788999999999999999999988888 9999999 88888 4556778888887766554332 33444
Q ss_pred eecCCCCccceEEEEeeccCccchhhcccccccCCCCcceeEEEeeeccceecCCCCCCCceeeecCCCeEEeecCCCeE
Q 000725 1147 SFCPSVGEDSAIWLLVSTISDSDAQHNCMSRDCQKNPVRFWRLALLVKNRVILGSPLDPRASAIGASSGLGIIGTNDGLV 1226 (1329)
Q Consensus 1147 sF~P~sGeD~AiwLLVST~Sdd~t~~Dlra~~~~gH~n~~wRLALl~K~siI~Gs~ldpra~afs~SG~~gfaGT~DGlV 1226 (1329)
.-| --|+| +|+ ++. -..||+.-.+..|
T Consensus 217 -~k~----~Raif---------------------------------------l~~-g~i--------~tTGfsr~seRq~ 243 (472)
T KOG0303|consen 217 -AKP----ARAIF---------------------------------------LAS-GKI--------FTTGFSRMSERQI 243 (472)
T ss_pred -CCc----ceeEE---------------------------------------ecc-Cce--------eeeccccccccce
Confidence 111 00111 111 110 1235666778888
Q ss_pred EEEE---ccccceeeeeecccCceEEEEEecCCCCceEEEecCCCCCCcccc
Q 000725 1227 YAWE---LSSGNKLGILHHFKGGTVSCIATDDSGLQALAVAGDGPDGGRRQR 1275 (1329)
Q Consensus 1227 YmWD---LstG~kL~tL~~Heg~rVSCVA~dps~p~~~AsA~d~~d~~~r~~ 1275 (1329)
-+|| |++.-.+.+|..-+| |-===+||.-+. +-+|| ++|+.||-+
T Consensus 244 aLwdp~nl~eP~~~~elDtSnG--vl~PFyD~dt~i-vYl~G-KGD~~IRYy 291 (472)
T KOG0303|consen 244 ALWDPNNLEEPIALQELDTSNG--VLLPFYDPDTSI-VYLCG-KGDSSIRYF 291 (472)
T ss_pred eccCcccccCcceeEEeccCCc--eEEeeecCCCCE-EEEEe-cCCcceEEE
Confidence 8886 677777778887777 444456655555 44442 444444433
No 187
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.53 E-value=5e-06 Score=103.82 Aligned_cols=222 Identities=14% Similarity=0.111 Sum_probs=138.8
Q ss_pred EEecCcceeeeEEEecc-cceeEEEEe--cCCeEEEecCCCeEEEEe---ccCc-ceEEEeeeeecCCCCcccceeEEEe
Q 000725 995 VKVKPGYVSVVAKLKTD-DCVQCILVC--EPKHLIAVGESGKLHLWE---MNSS-WSAQVEECIIPINDCIYPCIVEMKR 1067 (1329)
Q Consensus 995 v~V~~G~vsll~kL~~h-~sV~cIlVc--DpnhLVSaSdDGkL~IWD---M~Sg-Wsm~tee~Vi~~n~~v~p~I~elKr 1067 (1329)
|.+ .|. +++.|.-| ..|..+++. +...+||+|+||+|+||+ |.-+ -+++++-...+ .+..+..+ .
T Consensus 1034 W~p-~G~--lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~----~~sr~~~v-t 1105 (1431)
T KOG1240|consen 1034 WNP-RGI--LVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSP----EGSRVEKV-T 1105 (1431)
T ss_pred CCc-cce--EeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEec----cCCceEEE-E
Confidence 555 355 89999999 888899998 336999999999999999 3333 45555542222 33456666 6
Q ss_pred cCCCCCeeEecCCCccEEEEEccc-----cceeee--eccCccc-eeE-ecccc--------ccccccCcceEECcchhh
Q 000725 1068 IPKCAPLVVGHNGFGEFGIWDISK-----RVLVSR--FSAARAS-IYQ-FFPIN--------LFSWQRNGSVSMDASLEL 1130 (1329)
Q Consensus 1068 Fpkss~lIVTgSGDgtf~LWDIsk-----g~llqs--F~ahs~s-V~s-fsP~~--------s~S~d~~v~tfd~~s~d~ 1130 (1329)
+-..+++++-++-||.+.+-+|.- ..+.|. -..+... |.. -.++. -...-+-|..||++.-..
T Consensus 1106 ~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~ 1185 (1431)
T KOG1240|consen 1106 MCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHD 1185 (1431)
T ss_pred eccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhh
Confidence 666677777779999999999876 222111 1111111 111 11111 111224467788877666
Q ss_pred hccccccccccCCCceeecCCCCccceEEEEeeccCccchhhcccccccCCCCcceeEEEeeeccceecCCCCCCCceee
Q 000725 1131 TNTATTSLFSKHSEKSSFCPSVGEDSAIWLLVSTISDSDAQHNCMSRDCQKNPVRFWRLALLVKNRVILGSPLDPRASAI 1210 (1329)
Q Consensus 1131 ~leatv~~fSgdvn~VsF~P~sGeD~AiwLLVST~Sdd~t~~Dlra~~~~gH~n~~wRLALl~K~siI~Gs~ldpra~af 1210 (1329)
.-....+.=.|-+-++.-.| - +.|+++||-..-..|||+|-+. +..+|+ ++...++|-++.
T Consensus 1186 ~w~lk~~~~hG~vTSi~idp----~-~~WlviGts~G~l~lWDLRF~~----~i~sw~----------~P~~~~i~~v~~ 1246 (1431)
T KOG1240|consen 1186 AWRLKNQLRHGLVTSIVIDP----W-CNWLVIGTSRGQLVLWDLRFRV----PILSWE----------HPARAPIRHVWL 1246 (1431)
T ss_pred HHhhhcCccccceeEEEecC----C-ceEEEEecCCceEEEEEeecCc----eeeccc----------CcccCCcceEEe
Confidence 51011222223344477777 3 7799999999999999999666 666666 333334443333
Q ss_pred ecC----CCeEEeec-CCCeEEEEEccccceeeeeecc
Q 000725 1211 GAS----SGLGIIGT-NDGLVYAWELSSGNKLGILHHF 1243 (1329)
Q Consensus 1211 s~S----G~~gfaGT-~DGlVYmWDLstG~kL~tL~~H 1243 (1329)
-+- .-.+++|+ .-+-|-+|++.+|.+-.+|-.-
T Consensus 1247 ~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s 1284 (1431)
T KOG1240|consen 1247 CPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWAS 1284 (1431)
T ss_pred eccCCCCceEEEecccCCCceeeeecccCcceEEEEcC
Confidence 332 23455566 6788999999999888777655
No 188
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=98.48 E-value=1.5e-06 Score=105.85 Aligned_cols=162 Identities=13% Similarity=0.076 Sum_probs=109.2
Q ss_pred cccccceeeecCCCcEEEEecCccCccccCCCccccccccccccCCCCcEEEEEecCcceeeeEEEecc-cceeEEEEe-
Q 000725 943 IALERSCALFTPDGQYLVLLDSMKTPYCREGRSDCLCSTCTSHRLDENAVKIVKVKPGYVSVVAKLKTD-DCVQCILVC- 1020 (1329)
Q Consensus 943 ~~~ersglqFTPDGQ~LvLlgsik~p~CR~~~~dC~Cs~C~~s~seDNtVKIv~V~~G~vsll~kL~~h-~sV~cIlVc- 1020 (1329)
+++-...++|+.||.+++ -+|+|=+||++++..+. -..+|.+| +.|.||-.-
T Consensus 95 ftlp~r~~~v~g~g~~ia------------------------agsdD~~vK~~~~~D~s--~~~~lrgh~apVl~l~~~p 148 (933)
T KOG1274|consen 95 FTLPIRDLAVSGSGKMIA------------------------AGSDDTAVKLLNLDDSS--QEKVLRGHDAPVLQLSYDP 148 (933)
T ss_pred eeccceEEEEecCCcEEE------------------------eecCceeEEEEeccccc--hheeecccCCceeeeeEcC
Confidence 345667899999999999 99999999999999966 99999999 999999999
Q ss_pred cCCeEEEecCCCeEEEEeccCcceEEEeeeeecCCCCc-ccceeEEEecCCCCCeeEecCCCccEEEEEccccceeeee-
Q 000725 1021 EPKHLIAVGESGKLHLWEMNSSWSAQVEECIIPINDCI-YPCIVEMKRIPKCAPLVVGHNGFGEFGIWDISKRVLVSRF- 1098 (1329)
Q Consensus 1021 DpnhLVSaSdDGkL~IWDM~SgWsm~tee~Vi~~n~~v-~p~I~elKrFpkss~lIVTgSGDgtf~LWDIskg~llqsF- 1098 (1329)
..+.|++++-||+|.|||+.++-...+.--|+++|+-. ...+--+ ++.+.+-..+--.-|+++.+++.......-.+
T Consensus 149 ~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~-aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr 227 (933)
T KOG1274|consen 149 KGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRL-AWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLR 227 (933)
T ss_pred CCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeee-eecCCCCeEEeeccCCeEEEEccCCceeheeec
Confidence 88999999999999999999888877777666666665 2222223 44444444444444555555554444432111
Q ss_pred ---ccCccceeEecccc----ccccccCcceEECcchhhh
Q 000725 1099 ---SAARASIYQFFPIN----LFSWQRNGSVSMDASLELT 1131 (1329)
Q Consensus 1099 ---~ahs~sV~sfsP~~----s~S~d~~v~tfd~~s~d~~ 1131 (1329)
++-.-.+.+|+|.| +...+|.|-+|++.+.|++
T Consensus 228 ~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~~ 267 (933)
T KOG1274|consen 228 DKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHERH 267 (933)
T ss_pred ccccccceEEEEEcCCCcEEeeeccCCcEEEEecccchhc
Confidence 11112233355555 4445555555555543333
No 189
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=98.48 E-value=6.6e-07 Score=105.80 Aligned_cols=254 Identities=17% Similarity=0.178 Sum_probs=163.3
Q ss_pred CCCcEEEEEecC-cce--eeeEEEecccceeEEEEe--cCCeEEEecCCCeEEEEeccCcceEEEeeeeecCCCCcccce
Q 000725 988 DENAVKIVKVKP-GYV--SVVAKLKTDDCVQCILVC--EPKHLIAVGESGKLHLWEMNSSWSAQVEECIIPINDCIYPCI 1062 (1329)
Q Consensus 988 eDNtVKIv~V~~-G~v--sll~kL~~h~sV~cIlVc--DpnhLVSaSdDGkL~IWDM~SgWsm~tee~Vi~~n~~v~p~I 1062 (1329)
--+.|-|+.++. |.+ -++-.|..-..|-++.|- |+.+|+-+.+||+|.||.+.++=.-..+-.=.---..|+-.|
T Consensus 601 ~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI 680 (1012)
T KOG1445|consen 601 SGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKI 680 (1012)
T ss_pred CCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceE
Confidence 345677887643 443 356666666788899998 999999999999999999776543222210000112477778
Q ss_pred eEEEecCC-CCCeeEecCCCccEEEEEccccceeeeeccCccceeE--ecccc----ccccccCcceEECcchhhhc-cc
Q 000725 1063 VEMKRIPK-CAPLVVGHNGFGEFGIWDISKRVLVSRFSAARASIYQ--FFPIN----LFSWQRNGSVSMDASLELTN-TA 1134 (1329)
Q Consensus 1063 ~elKrFpk-ss~lIVTgSGDgtf~LWDIskg~llqsF~ahs~sV~s--fsP~~----s~S~d~~v~tfd~~s~d~~l-ea 1134 (1329)
..+ ||.+ .+.++++.++|.||+|||++.+.+-.+|.+|.+-||. .+|+| +---||++++|.-++.+..+ ++
T Consensus 681 ~sl-RfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg 759 (1012)
T KOG1445|consen 681 TSL-RFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEG 759 (1012)
T ss_pred EEE-EecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccC
Confidence 888 7766 4678899999999999999999999999999999999 89999 44458888888888888773 32
Q ss_pred cccccccCCCceeecCCCCccceEEEEeecc-Cccchh---hcccccccCCCCcceeEEEeeeccceecCCCCCCCceee
Q 000725 1135 TTSLFSKHSEKSSFCPSVGEDSAIWLLVSTI-SDSDAQ---HNCMSRDCQKNPVRFWRLALLVKNRVILGSPLDPRASAI 1210 (1329)
Q Consensus 1135 tv~~fSgdvn~VsF~P~sGeD~AiwLLVST~-Sdd~t~---~Dlra~~~~gH~n~~wRLALl~K~siI~Gs~ldpra~af 1210 (1329)
+.++..-.-.+.|-= | +-+|+|+.. ..+++| ||.. ..++-+ .|-..|=+-.++.+-. .|+
T Consensus 760 -~gpvgtRgARi~wac----d-gr~viv~Gfdk~SeRQv~~Y~Aq--~l~~~p--l~t~~lDvaps~LvP~-YD~----- 823 (1012)
T KOG1445|consen 760 -KGPVGTRGARILWAC----D-GRIVIVVGFDKSSERQVQMYDAQ--TLDLRP--LYTQVLDVAPSPLVPH-YDY----- 823 (1012)
T ss_pred -CCCccCcceeEEEEe----c-CcEEEEecccccchhhhhhhhhh--hccCCc--ceeeeecccCcccccc-ccC-----
Confidence 222333222244443 4 455555544 344555 4443 211111 1222332333333333 222
Q ss_pred ecCCCeEEeecCCCeEEEEEccccce-eee------eecccCceEEEEEecCCC-CceEEEe
Q 000725 1211 GASSGLGIIGTNDGLVYAWELSSGNK-LGI------LHHFKGGTVSCIATDDSG-LQALAVA 1264 (1329)
Q Consensus 1211 s~SG~~gfaGT~DGlVYmWDLstG~k-L~t------L~~Heg~rVSCVA~dps~-p~~~AsA 1264 (1329)
-++-++++|--|..|||+|+.--.- +.. -.+|+| +++.+.- .+|+++-
T Consensus 824 -Ds~~lfltGKGD~~v~~yEv~~esPy~lpl~~f~sp~~hqG-----l~fl~K~~CdV~~VE 879 (1012)
T KOG1445|consen 824 -DSNVLFLTGKGDRFVNMYEVIYESPYLLPLAPFMSPVGHQG-----LAFLQKLKCDVMAVE 879 (1012)
T ss_pred -CCceEEEecCCCceEEEEEecCCCceeeecccccCCCcccc-----eeeecccccceeeee
Confidence 1466788999999999999876542 222 246777 2555433 6666654
No 190
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.46 E-value=4.6e-07 Score=104.61 Aligned_cols=273 Identities=15% Similarity=0.115 Sum_probs=193.9
Q ss_pred EEEEEEeccccccceEEEEEEeeeCCCCCCCCceeeccccccccccccccccc-ccccceeeecCCCcEEEEecCccCcc
Q 000725 891 IYVCVSCGFLVDKKRTLFIYTVDIQEPRVGNPSCVGHTSVMLPFLKDNFGREI-ALERSCALFTPDGQYLVLLDSMKTPY 969 (1329)
Q Consensus 891 i~IcVlCG~L~~~~r~Lf~Yki~i~~~~~~~p~~vg~t~~llp~~~~~~~~~~-~~ersglqFTPDGQ~LvLlgsik~p~ 969 (1329)
|..=-.||||+..+ -=-+|+|.-++-.. . |-+-+....|--++ -|.---+.||-+|++|+
T Consensus 85 ~Ll~e~~G~le~e~-~EkT~~v~Q~~Ia~---~------Vdi~sa~k~f~L~l~eFGPY~~~ytrnGrhll--------- 145 (545)
T KOG1272|consen 85 ILLPETAGYLEAEG-LEKTYKVRQDDIAE---N------VDIASATKHFDLSLPEFGPYHLDYTRNGRHLL--------- 145 (545)
T ss_pred eeccccCCcccccC-CcceeeeEHhhhhh---h------ccHHhHHhhccccccccCCeeeeecCCccEEE---------
Confidence 44445799998665 33467775443221 1 33344444454444 24555689999999999
Q ss_pred ccCCCccccccccccccCCCCcEEEEEecCcceeeeEEEecccceeEEEEecCCeEEEecCCCeEEEEeccCcceEEEee
Q 000725 970 CREGRSDCLCSTCTSHRLDENAVKIVKVKPGYVSVVAKLKTDDCVQCILVCEPKHLIAVGESGKLHLWEMNSSWSAQVEE 1049 (1329)
Q Consensus 970 CR~~~~dC~Cs~C~~s~seDNtVKIv~V~~G~vsll~kL~~h~sV~cIlVcDpnhLVSaSdDGkL~IWDM~SgWsm~tee 1049 (1329)
-++-.+-|-..|-.++. +..++.--..|++|.+--+-.++++.|-.-++|+|=+- .-+-|..
T Consensus 146 ---------------lgGrKGHlAa~Dw~t~~--L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~G-tElHClk 207 (545)
T KOG1272|consen 146 ---------------LGGRKGHLAAFDWVTKK--LHFEINVMETVRDVTFLHNEQFFAVAQKKYVYVYDNNG-TELHCLK 207 (545)
T ss_pred ---------------ecCCccceeeeecccce--eeeeeehhhhhhhhhhhcchHHHHhhhhceEEEecCCC-cEEeehh
Confidence 67778889999999988 99999999999999999777888899999999999433 2222222
Q ss_pred eeecCCCCcccceeEEEecCCCCCeeEecCCCccEEEEEccccceeeeeccCccce--eEecccc----ccccccCcceE
Q 000725 1050 CIIPINDCIYPCIVEMKRIPKCAPLVVGHNGFGEFGIWDISKRVLVSRFSAARASI--YQFFPIN----LFSWQRNGSVS 1123 (1329)
Q Consensus 1050 ~Vi~~n~~v~p~I~elKrFpkss~lIVTgSGDgtf~LWDIskg~llqsF~ahs~sV--~sfsP~~----s~S~d~~v~tf 1123 (1329)
- -.-+.-| .|.+.--|++++|..|-.+-=||+.|++++.|..-.+.+ |.-+|-. +++-.|+|..|
T Consensus 208 ~--------~~~v~rL-eFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlW 278 (545)
T KOG1272|consen 208 R--------HIRVARL-EFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLW 278 (545)
T ss_pred h--------cCchhhh-cccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEec
Confidence 0 0012223 899989999999999999999999999999998776654 4466654 55556666666
Q ss_pred ECcchhhh--ccccccccccCCCceeecCCCCccceEEEEeeccCccchhhcccccccCCCCcceeEEEeeeccceecCC
Q 000725 1124 MDASLELT--NTATTSLFSKHSEKSSFCPSVGEDSAIWLLVSTISDSDAQHNCMSRDCQKNPVRFWRLALLVKNRVILGS 1201 (1329)
Q Consensus 1124 d~~s~d~~--leatv~~fSgdvn~VsF~P~sGeD~AiwLLVST~Sdd~t~~Dlra~~~~gH~n~~wRLALl~K~siI~Gs 1201 (1329)
+-.+-|-. +.-|..+|
T Consensus 279 SP~skePLvKiLcH~g~V-------------------------------------------------------------- 296 (545)
T KOG1272|consen 279 SPNSKEPLVKILCHRGPV-------------------------------------------------------------- 296 (545)
T ss_pred CCCCcchHHHHHhcCCCc--------------------------------------------------------------
Confidence 55443333 11111111
Q ss_pred CCCCCceeeecCCCeEEeecCCCeEEEEEccccceeeeeecccCceEEEEEecCCCCceEEEecCCCCCCccccCCCCCC
Q 000725 1202 PLDPRASAIGASSGLGIIGTNDGLVYAWELSSGNKLGILHHFKGGTVSCIATDDSGLQALAVAGDGPDGGRRQRDPRHGQ 1281 (1329)
Q Consensus 1202 ~ldpra~afs~SG~~gfaGT~DGlVYmWDLstG~kL~tL~~Heg~rVSCVA~dps~p~~~AsA~d~~d~~~r~~~~~~s~ 1281 (1329)
++.|+..+|+|+++..-|..|++|||-.=..+.+++--.. ++.++++ ..|+..+ |+
T Consensus 297 ----~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~--a~~ls~S---qkglLA~---------------~~ 352 (545)
T KOG1272|consen 297 ----SSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHP--ASNLSLS---QKGLLAL---------------SY 352 (545)
T ss_pred ----ceEEECCCCcEEeecccccceeEeeeccccccceeecCCC--ccccccc---cccceee---------------ec
Confidence 3477888999999999999999999999998888877333 5678888 5555555 67
Q ss_pred CCcEEEeeeCCCcc
Q 000725 1282 NDHVRIWKMDPNLG 1295 (1329)
Q Consensus 1282 D~~VRiW~~~~~~~ 1295 (1329)
-.||.||+..-+.+
T Consensus 353 G~~v~iw~d~~~~s 366 (545)
T KOG1272|consen 353 GDHVQIWKDALKGS 366 (545)
T ss_pred CCeeeeehhhhcCC
Confidence 88999999876644
No 191
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.46 E-value=5.4e-05 Score=85.67 Aligned_cols=277 Identities=15% Similarity=0.085 Sum_probs=149.4
Q ss_pred ceeeecCCCcEEEEecCccCccccCCCccccccccccccCCCCcEEEEEecCcceeeeEEEecccceeEEEEe-cCCeEE
Q 000725 948 SCALFTPDGQYLVLLDSMKTPYCREGRSDCLCSTCTSHRLDENAVKIVKVKPGYVSVVAKLKTDDCVQCILVC-EPKHLI 1026 (1329)
Q Consensus 948 sglqFTPDGQ~LvLlgsik~p~CR~~~~dC~Cs~C~~s~seDNtVKIv~V~~G~vsll~kL~~h~sV~cIlVc-DpnhLV 1026 (1329)
-++.|||||+|+. ..+.|+.|-++|+.++. ++.++..-..-.+|.++ |.++++
T Consensus 40 ~~~~~s~Dgr~~y------------------------v~~rdg~vsviD~~~~~--~v~~i~~G~~~~~i~~s~DG~~~~ 93 (369)
T PF02239_consen 40 AGLKFSPDGRYLY------------------------VANRDGTVSVIDLATGK--VVATIKVGGNPRGIAVSPDGKYVY 93 (369)
T ss_dssp EEEE-TT-SSEEE------------------------EEETTSEEEEEETTSSS--EEEEEE-SSEEEEEEE--TTTEEE
T ss_pred eEEEecCCCCEEE------------------------EEcCCCeEEEEECCccc--EEEEEecCCCcceEEEcCCCCEEE
Confidence 4678999999999 56678999999999988 99999999889999999 999887
Q ss_pred Ee-cCCCeEEEEeccCcceEEEeeeeecCCCCcccceeEEEecCCCCCeeEecCCCccEEEEEccccce--eeeeccCcc
Q 000725 1027 AV-GESGKLHLWEMNSSWSAQVEECIIPINDCIYPCIVEMKRIPKCAPLVVGHNGFGEFGIWDISKRVL--VSRFSAARA 1103 (1329)
Q Consensus 1027 Sa-SdDGkL~IWDM~SgWsm~tee~Vi~~n~~v~p~I~elKrFpkss~lIVTgSGDgtf~LWDIskg~l--lqsF~ahs~ 1103 (1329)
.+ -.+++|.|+|..|--.++.-..--.+.++..+-+..+..-+.....|+.--.-+++-+=|.+.... +..++. +.
T Consensus 94 v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~-g~ 172 (369)
T PF02239_consen 94 VANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKV-GR 172 (369)
T ss_dssp EEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE---T
T ss_pred EEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecc-cc
Confidence 55 589999999999966666544211223234444555545566555777666666666667665432 334332 22
Q ss_pred ceeE--ecccc-----ccccccCcceEECcchhhh-c-cccccccccCCCceeecCCCCccce-EEEEeeccCccchhhc
Q 000725 1104 SIYQ--FFPIN-----LFSWQRNGSVSMDASLELT-N-TATTSLFSKHSEKSSFCPSVGEDSA-IWLLVSTISDSDAQHN 1173 (1329)
Q Consensus 1104 sV~s--fsP~~-----s~S~d~~v~tfd~~s~d~~-l-eatv~~fSgdvn~VsF~P~sGeD~A-iwLLVST~Sdd~t~~D 1173 (1329)
.-+- |.|++ .......+-+++....... + ..-..+..+..-+ ..+| .+| .|-...-. ....=.
T Consensus 173 ~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~-~php----~~g~vw~~~~~~--~~~~~~ 245 (369)
T PF02239_consen 173 FPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGAN-FPHP----GFGPVWATSGLG--YFAIPL 245 (369)
T ss_dssp TEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEE-EEET----TTEEEEEEEBSS--SSEEEE
T ss_pred cccccccCcccceeeecccccceeEEEeeccceEEEEeecccccccccccc-ccCC----CcceEEeecccc--ceeccc
Confidence 2122 66665 1122333444444443332 1 1101111111111 1344 222 23221111 111111
Q ss_pred ccccccCCCCcceeEEEeeeccceecCCCCCCCceeeecCCCeEEee----cCCCeEEEEEccccceeeeeecccCceEE
Q 000725 1174 CMSRDCQKNPVRFWRLALLVKNRVILGSPLDPRASAIGASSGLGIIG----TNDGLVYAWELSSGNKLGILHHFKGGTVS 1249 (1329)
Q Consensus 1174 lra~~~~gH~n~~wRLALl~K~siI~Gs~ldpra~afs~SG~~gfaG----T~DGlVYmWDLstG~kL~tL~~Heg~rVS 1249 (1329)
+..+.-..|.-..|++- +.--.-|. |=-+...|.++|+... .+.+.|.++|..+-+.+.++....+.++.
T Consensus 246 ig~~~v~v~d~~~wkvv---~~I~~~G~---glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~ 319 (369)
T PF02239_consen 246 IGTDPVSVHDDYAWKVV---KTIPTQGG---GLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVV 319 (369)
T ss_dssp EE--TTT-STTTBTSEE---EEEE-SSS---S--EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EE
T ss_pred ccCCccccchhhcCeEE---EEEECCCC---cceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEe
Confidence 11222122333445432 11112233 2346679999999988 66799999999999999999877777899
Q ss_pred EEEecCCCCceEEEe
Q 000725 1250 CIATDDSGLQALAVA 1264 (1329)
Q Consensus 1250 CVA~dps~p~~~AsA 1264 (1329)
-+.+++++..+..+.
T Consensus 320 h~ef~~dG~~v~vS~ 334 (369)
T PF02239_consen 320 HMEFNPDGKEVWVSV 334 (369)
T ss_dssp EEEE-TTSSEEEEEE
T ss_pred ccEECCCCCEEEEEE
Confidence 999999999877766
No 192
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.44 E-value=1.2e-06 Score=100.07 Aligned_cols=204 Identities=14% Similarity=0.142 Sum_probs=134.9
Q ss_pred cccCccceeeeecccccceeeeeeccCCeEEEEEEeccccccceEEEEEEeeeCCCCCCCCceeeccccccccccccccc
Q 000725 862 ELAGTFDLMGCYFFPLPILSVLLSTTGDKIYVCVSCGFLVDKKRTLFIYTVDIQEPRVGNPSCVGHTSVMLPFLKDNFGR 941 (1329)
Q Consensus 862 ~l~~~~~l~g~y~HpmpVlsv~l~t~~~ei~IcVlCG~L~~~~r~Lf~Yki~i~~~~~~~p~~vg~t~~llp~~~~~~~~ 941 (1329)
+..+...+|||=.||.+--++- -++| -++| -+=.+++-..|-.-...+..+...+- +.++. ..|+.
T Consensus 81 ~~~~~~~~vG~~~~~~~~~~~h--~~~~-~~~~---k~~~~~~~~~~e~~~~~d~~~~~~a~------v~~~l--~~~g~ 146 (398)
T KOG0771|consen 81 ESPGGIILVGCDDGAPYRESVH--PNGN-GRAR---KLPSGCECFHFEFVASSDFNAETAAN------VYQKL--VDFGQ 146 (398)
T ss_pred cCcCCeeEeccCCCcchhhhcc--ccCC-eeee---ecCCcccccccccccccccchhhhhh------HhHHH--hhcCc
Confidence 4556778888888855433321 1122 3333 23333332222222223333332222 22221 23444
Q ss_pred ccccccceeeecCCCcEEEEecCccCccccCCCccccccccccccCCCCcEEEEEecCcceeeeEEEecc-cceeEEEEe
Q 000725 942 EIALERSCALFTPDGQYLVLLDSMKTPYCREGRSDCLCSTCTSHRLDENAVKIVKVKPGYVSVVAKLKTD-DCVQCILVC 1020 (1329)
Q Consensus 942 ~~~~ersglqFTPDGQ~LvLlgsik~p~CR~~~~dC~Cs~C~~s~seDNtVKIv~V~~G~vsll~kL~~h-~sV~cIlVc 1020 (1329)
+ -.++|++||-.|+ .++.|+++|||+.-. ...+..+.+| .+|.|+.++
T Consensus 147 ~-----k~vaf~~~gs~la------------------------tgg~dg~lRv~~~Ps--~~t~l~e~~~~~eV~DL~FS 195 (398)
T KOG0771|consen 147 Q-----KVVAFNGDGSKLA------------------------TGGTDGTLRVWEWPS--MLTILEEIAHHAEVKDLDFS 195 (398)
T ss_pred c-----eEEEEcCCCCEee------------------------eccccceEEEEecCc--chhhhhhHhhcCccccceeC
Confidence 3 7899999999999 999999999999555 2355555555 999999999
Q ss_pred -cCCeEEEecCCCeEEEEeccCcceEEEee----------------------eee-c--CCCCccc--------------
Q 000725 1021 -EPKHLIAVGESGKLHLWEMNSSWSAQVEE----------------------CII-P--INDCIYP-------------- 1060 (1329)
Q Consensus 1021 -DpnhLVSaSdDGkL~IWDM~SgWsm~tee----------------------~Vi-~--~n~~v~p-------------- 1060 (1329)
|...|||.|.| ...||+.++|--++... +++ . +-+.+.-
T Consensus 196 ~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~ 274 (398)
T KOG0771|consen 196 PDGKFLASIGAD-SARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRL 274 (398)
T ss_pred CCCcEEEEecCC-ceEEEEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccch
Confidence 99999999999 99999999992221111 222 1 1111211
Q ss_pred --------ceeEEEecCCCCCeeEecCCCccEEEEEccccceeeee-ccCccceeE--ecccc
Q 000725 1061 --------CIVEMKRIPKCAPLVVGHNGFGEFGIWDISKRVLVSRF-SAARASIYQ--FFPIN 1112 (1329)
Q Consensus 1061 --------~I~elKrFpkss~lIVTgSGDgtf~LWDIskg~llqsF-~ahs~sV~s--fsP~~ 1112 (1329)
.|-.+ .+..++.+++=|+-||.+.|.|..+-++++-+ ++|...|+. |+|+.
T Consensus 275 ~~~~~~~~siSsl-~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pds 336 (398)
T KOG0771|consen 275 RKKIKRFKSISSL-AVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDS 336 (398)
T ss_pred hhhhhccCcceeE-EEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCc
Confidence 33334 77899999999999999999999999998776 699999998 99997
No 193
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.43 E-value=5.4e-06 Score=93.67 Aligned_cols=225 Identities=13% Similarity=0.074 Sum_probs=134.5
Q ss_pred CCcEEEEEecCcceeeeEEEecc-cceeEEEEe-cCCeEEEecCC---CeEEEEeccCcceEEEeeeeecCCCCccccee
Q 000725 989 ENAVKIVKVKPGYVSVVAKLKTD-DCVQCILVC-EPKHLIAVGES---GKLHLWEMNSSWSAQVEECIIPINDCIYPCIV 1063 (1329)
Q Consensus 989 DNtVKIv~V~~G~vsll~kL~~h-~sV~cIlVc-DpnhLVSaSdD---GkL~IWDM~SgWsm~tee~Vi~~n~~v~p~I~ 1063 (1329)
...|.||+...+. ...|..+ ..+.+..|+ |.++|+.++.+ .+|.+||+.++-...... ..+ ...
T Consensus 183 ~~~l~i~D~~g~~---~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~-----~~g---~~~ 251 (433)
T PRK04922 183 RYALQVADSDGYN---PQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVAS-----FRG---ING 251 (433)
T ss_pred eEEEEEECCCCCC---ceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEecc-----CCC---Ccc
Confidence 4579999987665 3445555 678899999 99999988744 479999998875432221 111 122
Q ss_pred EEEecCCCCCeeE-ecC--CCccEEEEEccccceeeeeccCcccee--Eecccc---ccccc--cCcceEEC--cchhhh
Q 000725 1064 EMKRIPKCAPLVV-GHN--GFGEFGIWDISKRVLVSRFSAARASIY--QFFPIN---LFSWQ--RNGSVSMD--ASLELT 1131 (1329)
Q Consensus 1064 elKrFpkss~lIV-TgS--GDgtf~LWDIskg~llqsF~ahs~sV~--sfsP~~---s~S~d--~~v~tfd~--~s~d~~ 1131 (1329)
.. +|.+++..|+ +.+ +...+.+||+.+|+..+ +..+..... +|+|++ .+.-+ +...+|.. .++..+
T Consensus 252 ~~-~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~-lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~ 329 (433)
T PRK04922 252 AP-SFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTR-LTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAE 329 (433)
T ss_pred Cc-eECCCCCEEEEEEeCCCCceEEEEECCCCCeEE-CccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeE
Confidence 44 7888887664 544 44569999999998754 444433332 399998 23322 23334443 333322
Q ss_pred cccccccccc-CCCceeecCCCCccceEEEEeeccCc---cchhhcccccccCCCCcceeEEEeeeccceecCCCCCCCc
Q 000725 1132 NTATTSLFSK-HSEKSSFCPSVGEDSAIWLLVSTISD---SDAQHNCMSRDCQKNPVRFWRLALLVKNRVILGSPLDPRA 1207 (1329)
Q Consensus 1132 leatv~~fSg-dvn~VsF~P~sGeD~AiwLLVST~Sd---d~t~~Dlra~~~~gH~n~~wRLALl~K~siI~Gs~ldpra 1207 (1329)
+. .+.+ .....+|+| | +.+|...+..+ ....||+.... +..|+... .| ..
T Consensus 330 ~l----t~~g~~~~~~~~Sp----D-G~~Ia~~~~~~~~~~I~v~d~~~g~----------~~~Lt~~~------~~-~~ 383 (433)
T PRK04922 330 RL----TFQGNYNARASVSP----D-GKKIAMVHGSGGQYRIAVMDLSTGS----------VRTLTPGS------LD-ES 383 (433)
T ss_pred Ee----ecCCCCccCEEECC----C-CCEEEEEECCCCceeEEEEECCCCC----------eEECCCCC------CC-CC
Confidence 21 1222 122478999 6 67777665533 23345554322 11222221 11 23
Q ss_pred eeeecCCCeEEeecCC---CeEEEEEccccceeeeeecccCceEEEEEec
Q 000725 1208 SAIGASSGLGIIGTND---GLVYAWELSSGNKLGILHHFKGGTVSCIATD 1254 (1329)
Q Consensus 1208 ~afs~SG~~gfaGT~D---GlVYmWDLstG~kL~tL~~Heg~rVSCVA~d 1254 (1329)
.+++++|++++..+++ +.||+|++ +|.....|-.+.+ .|+.++.+
T Consensus 384 p~~spdG~~i~~~s~~~g~~~L~~~~~-~g~~~~~l~~~~g-~~~~p~ws 431 (433)
T PRK04922 384 PSFAPNGSMVLYATREGGRGVLAAVST-DGRVRQRLVSADG-EVREPAWS 431 (433)
T ss_pred ceECCCCCEEEEEEecCCceEEEEEEC-CCCceEEcccCCC-CCCCCccC
Confidence 5899999988877764 57999999 5656666666655 56555544
No 194
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=98.42 E-value=5.1e-06 Score=95.05 Aligned_cols=177 Identities=14% Similarity=0.144 Sum_probs=127.3
Q ss_pred eecccccceeeeeeccCCeEEEEEEeccccccceEEEEEEeeeCCCCCCCCceeecccccccccccccccccccccceee
Q 000725 872 CYFFPLPILSVLLSTTGDKIYVCVSCGFLVDKKRTLFIYTVDIQEPRVGNPSCVGHTSVMLPFLKDNFGREIALERSCAL 951 (1329)
Q Consensus 872 ~y~HpmpVlsv~l~t~~~ei~IcVlCG~L~~~~r~Lf~Yki~i~~~~~~~p~~vg~t~~llp~~~~~~~~~~~~ersglq 951 (1329)
....+-||+|+..---+ ...-..||. ..+ .-++++.-.+|-.|-+.+-=|..| . --..+-.+++
T Consensus 9 ~wH~~~pv~s~dfq~n~--~~~laT~G~-D~~---iriW~v~r~~~~~~~~~V~y~s~L-----s-----~H~~aVN~vR 72 (434)
T KOG1009|consen 9 SWHDHEPVYSVDFQKNS--LNKLATAGG-DKD---IRIWKVNRSEPGGGDMKVEYLSSL-----S-----RHTRAVNVVR 72 (434)
T ss_pred EecCCCceEEEEeccCc--ccceecccC-ccc---eeeeeeeecCCCCCceeEEEeecc-----c-----CCcceeEEEE
Confidence 33457799998764322 223444542 223 334566666666665553222221 1 1234667999
Q ss_pred ecCCCcEEEEecCccCccccCCCccccccccccccCCCCcEEEEEec--------------CcceeeeEEEecc-cceeE
Q 000725 952 FTPDGQYLVLLDSMKTPYCREGRSDCLCSTCTSHRLDENAVKIVKVK--------------PGYVSVVAKLKTD-DCVQC 1016 (1329)
Q Consensus 952 FTPDGQ~LvLlgsik~p~CR~~~~dC~Cs~C~~s~seDNtVKIv~V~--------------~G~vsll~kL~~h-~sV~c 1016 (1329)
|+|+|..|+ +|++++.|-||..+ .-+-=+..+|.+| ..+-+
T Consensus 73 f~p~gelLA------------------------Sg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diyd 128 (434)
T KOG1009|consen 73 FSPDGELLA------------------------SGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYD 128 (434)
T ss_pred EcCCcCeee------------------------ecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhh
Confidence 999999999 99999999999988 2334577889999 99999
Q ss_pred EEEe-cCCeEEEecCCCeEEEEeccCcceEEEeeeeecCCCCcccceeEEEecCCCCCeeEecCCCccEEEEEcccccee
Q 000725 1017 ILVC-EPKHLIAVGESGKLHLWEMNSSWSAQVEECIIPINDCIYPCIVEMKRIPKCAPLVVGHNGFGEFGIWDISKRVLV 1095 (1329)
Q Consensus 1017 IlVc-DpnhLVSaSdDGkL~IWDM~SgWsm~tee~Vi~~n~~v~p~I~elKrFpkss~lIVTgSGDgtf~LWDIskg~ll 1095 (1329)
++|. |.+.+++++.|-.+++||+.+|=+.+... .|.+.+..+ +.-+..+.|++=|.|-.-...++..-+.+
T Consensus 129 L~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~-------dh~~yvqgv-awDpl~qyv~s~s~dr~~~~~~~~~~~~~ 200 (434)
T KOG1009|consen 129 LAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILD-------DHEHYVQGV-AWDPLNQYVASKSSDRHPEGFSAKLKQVI 200 (434)
T ss_pred hhccCCCceeeeeeccceEEEEEeccceeEeecc-------cccccccee-ecchhhhhhhhhccCcccceeeeeeeeee
Confidence 9999 99999999999999999999999988887 666777777 77777888888888876666665554443
Q ss_pred e
Q 000725 1096 S 1096 (1329)
Q Consensus 1096 q 1096 (1329)
+
T Consensus 201 ~ 201 (434)
T KOG1009|consen 201 K 201 (434)
T ss_pred e
Confidence 3
No 195
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=98.41 E-value=5.4e-06 Score=92.26 Aligned_cols=192 Identities=17% Similarity=0.243 Sum_probs=141.1
Q ss_pred cccCccceeeeecccccceeeeeeccCCeEEEEEEeccccccceEEEEEEeeeCCCCCCCCceeeccccccccccccccc
Q 000725 862 ELAGTFDLMGCYFFPLPILSVLLSTTGDKIYVCVSCGFLVDKKRTLFIYTVDIQEPRVGNPSCVGHTSVMLPFLKDNFGR 941 (1329)
Q Consensus 862 ~l~~~~~l~g~y~HpmpVlsv~l~t~~~ei~IcVlCG~L~~~~r~Lf~Yki~i~~~~~~~p~~vg~t~~llp~~~~~~~~ 941 (1329)
+..+.+.--+.|-||-||--|+..-...-.|= -+|....-+|=+++|..+|.+..+-+ + |..-+ ..
T Consensus 82 ~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~p----dlLATs~D~LRlWri~~ee~~~~~~~------~-L~~~k---ns 147 (364)
T KOG0290|consen 82 EDSGELVEDANFDHPYPVTKLMWIPDSKGVYP----DLLATSSDFLRLWRIGDEESRVELQS------V-LNNNK---NS 147 (364)
T ss_pred cCCCceeccCCCCCCCCccceEecCCccccCc----chhhcccCeEEEEeccCcCCceehhh------h-hccCc---cc
Confidence 55555556667999999999998766543333 78999999999999999988776655 2 22111 22
Q ss_pred ccccccceeee-cCCCcEEEEecCccCccccCCCccccccccccccCCCCcEEEEEecCcce-eeeEEEecc-cceeEEE
Q 000725 942 EIALERSCALF-TPDGQYLVLLDSMKTPYCREGRSDCLCSTCTSHRLDENAVKIVKVKPGYV-SVVAKLKTD-DCVQCIL 1018 (1329)
Q Consensus 942 ~~~~ersglqF-TPDGQ~LvLlgsik~p~CR~~~~dC~Cs~C~~s~seDNtVKIv~V~~G~v-sll~kL~~h-~sV~cIl 1018 (1329)
+..--.++..| .-|-+||. ++|-|-|-.||++++|-+ -+.|.|.|| -+|.+|.
T Consensus 148 ~~~aPlTSFDWne~dp~~ig------------------------tSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIa 203 (364)
T KOG0290|consen 148 EFCAPLTSFDWNEVDPNLIG------------------------TSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIA 203 (364)
T ss_pred ccCCcccccccccCCcceeE------------------------eecccCeEEEEEEeeccccceeeEEEecCcceeEEE
Confidence 22223445555 45677888 888899999999998721 289999999 8999999
Q ss_pred Eec--CCeEEEecCCCeEEEEeccCc--------------------ceEE-----------EeeeeecC----------C
Q 000725 1019 VCE--PKHLIAVGESGKLHLWEMNSS--------------------WSAQ-----------VEECIIPI----------N 1055 (1329)
Q Consensus 1019 VcD--pnhLVSaSdDGkL~IWDM~Sg--------------------Wsm~-----------tee~Vi~~----------n 1055 (1329)
|.. -++++|+|.||.+++.|+.+- |.-+ ..+.+|+| -
T Consensus 204 f~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L 283 (364)
T KOG0290|consen 204 FLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARL 283 (364)
T ss_pred eccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehh
Confidence 994 788999999999999994431 1111 11122311 2
Q ss_pred CCcccceeEEEecCCCCCeeEecCCCccEEEEEccc
Q 000725 1056 DCIYPCIVEMKRIPKCAPLVVGHNGFGEFGIWDISK 1091 (1329)
Q Consensus 1056 ~~v~p~I~elKrFpkss~lIVTgSGDgtf~LWDIsk 1091 (1329)
.+|..++..+|=.|-+.+.|.|++-|.-.-||||..
T Consensus 284 ~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q 319 (364)
T KOG0290|consen 284 RNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQ 319 (364)
T ss_pred hcCcccccceEecCCCCceeeecCCcceEEEEeccc
Confidence 248888888888999999999999999999999964
No 196
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=98.39 E-value=2.1e-05 Score=97.21 Aligned_cols=112 Identities=18% Similarity=0.258 Sum_probs=88.2
Q ss_pred ceeeecCCCcEEEEecCccCccccCCCccccccccccccCCCCcEEEEEecCcceeeeEEEecc-cceeEEEEecCCeEE
Q 000725 948 SCALFTPDGQYLVLLDSMKTPYCREGRSDCLCSTCTSHRLDENAVKIVKVKPGYVSVVAKLKTD-DCVQCILVCEPKHLI 1026 (1329)
Q Consensus 948 sglqFTPDGQ~LvLlgsik~p~CR~~~~dC~Cs~C~~s~seDNtVKIv~V~~G~vsll~kL~~h-~sV~cIlVcDpnhLV 1026 (1329)
+.+-|+-||.|++ ++|+|+++|||.+.++.+ +..+..+| ..|=.+.+-|. +|+
T Consensus 179 F~i~~s~dg~~i~------------------------s~SdDRsiRlW~i~s~~~-~~~~~fgHsaRvw~~~~~~n-~i~ 232 (967)
T KOG0974|consen 179 FSIVTSLDGRYIA------------------------SVSDDRSIRLWPIDSREV-LGCTGFGHSARVWACCFLPN-RII 232 (967)
T ss_pred EEEEEccCCcEEE------------------------EEecCcceeeeecccccc-cCcccccccceeEEEEeccc-eeE
Confidence 5678899999999 999999999999999773 33588899 66655544444 999
Q ss_pred EecCCCeEEEEeccCcceEEEeeeeecCCCC-cccceeEEEecCCCCCeeEecCCCccEEEEEccccce
Q 000725 1027 AVGESGKLHLWEMNSSWSAQVEECIIPINDC-IYPCIVEMKRIPKCAPLVVGHNGFGEFGIWDISKRVL 1094 (1329)
Q Consensus 1027 SaSdDGkL~IWDM~SgWsm~tee~Vi~~n~~-v~p~I~elKrFpkss~lIVTgSGDgtf~LWDIskg~l 1094 (1329)
|+|+|=++.+|+. .....+ ..+. .+-.|+.+ .++....+++|++.||++++||.-.+-.
T Consensus 233 t~gedctcrvW~~----~~~~l~----~y~~h~g~~iw~~-~~~~~~~~~vT~g~Ds~lk~~~l~~r~~ 292 (967)
T KOG0974|consen 233 TVGEDCTCRVWGV----NGTQLE----VYDEHSGKGIWKI-AVPIGVIIKVTGGNDSTLKLWDLNGRGL 292 (967)
T ss_pred EeccceEEEEEec----ccceeh----hhhhhhhcceeEE-EEcCCceEEEeeccCcchhhhhhhcccc
Confidence 9999999999953 333333 1123 45568888 8999999999999999999999876654
No 197
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.39 E-value=6.8e-06 Score=93.75 Aligned_cols=188 Identities=19% Similarity=0.292 Sum_probs=127.6
Q ss_pred cCCCCcEEEEEecCcc--eeeeEEEecccceeEEEEe--cCCeEEEecCC--CeEEEEeccCcceEEEeeeeecCCCCcc
Q 000725 986 RLDENAVKIVKVKPGY--VSVVAKLKTDDCVQCILVC--EPKHLIAVGES--GKLHLWEMNSSWSAQVEECIIPINDCIY 1059 (1329)
Q Consensus 986 ~seDNtVKIv~V~~G~--vsll~kL~~h~sV~cIlVc--DpnhLVSaSdD--GkL~IWDM~SgWsm~tee~Vi~~n~~v~ 1059 (1329)
|-.++-|.+|.++.|- .|.+.+|..++.|-.+==| +|+.++++|.. --|.|||++.. .++..
T Consensus 121 c~~sG~l~~~~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~--~qiw~---------- 188 (412)
T KOG3881|consen 121 CVSSGNLQVRHDKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQS--KQIWS---------- 188 (412)
T ss_pred EecCCcEEEEeccCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeecccc--eeeee----------
Confidence 3567899999999887 7999999999999888888 77777779988 88999999985 33333
Q ss_pred cceeEEEecCCCCCeeEecCCCccEEEEEccccceeeeeccCccceeEecccc------ccccccCcceEECcchhhhcc
Q 000725 1060 PCIVEMKRIPKCAPLVVGHNGFGEFGIWDISKRVLVSRFSAARASIYQFFPIN------LFSWQRNGSVSMDASLELTNT 1133 (1329)
Q Consensus 1060 p~I~elKrFpkss~lIVTgSGDgtf~LWDIskg~llqsF~ahs~sV~sfsP~~------s~S~d~~v~tfd~~s~d~~le 1133 (1329)
-|.+|+ +.| +-.+.+||..-+ |.|.. +++--+.+++||++-..+
T Consensus 189 -----aKNvpn-D~L------~LrVPvW~tdi~---------------Fl~g~~~~~fat~T~~hqvR~YDt~~qRR--- 238 (412)
T KOG3881|consen 189 -----AKNVPN-DRL------GLRVPVWITDIR---------------FLEGSPNYKFATITRYHQVRLYDTRHQRR--- 238 (412)
T ss_pred -----ccCCCC-ccc------cceeeeeeccce---------------ecCCCCCceEEEEecceeEEEecCcccCc---
Confidence 344444 221 334555553211 11111 011111123333221100
Q ss_pred ccccccccCCCceeecCCCCccceEEEEeeccCccchhhcccccccCCCCcceeEEEeeeccceecCCCCCCCceeeecC
Q 000725 1134 ATTSLFSKHSEKSSFCPSVGEDSAIWLLVSTISDSDAQHNCMSRDCQKNPVRFWRLALLVKNRVILGSPLDPRASAIGAS 1213 (1329)
Q Consensus 1134 atv~~fSgdvn~VsF~P~sGeD~AiwLLVST~Sdd~t~~Dlra~~~~gH~n~~wRLALl~K~siI~Gs~ldpra~afs~S 1213 (1329)
||. ++|++.+ -| .++...++
T Consensus 239 ----PV~------------------------------~fd~~E~----------~i----------------s~~~l~p~ 258 (412)
T KOG3881|consen 239 ----PVA------------------------------QFDFLEN----------PI----------------SSTGLTPS 258 (412)
T ss_pred ----cee------------------------------EeccccC----------cc----------------eeeeecCC
Confidence 000 1111100 01 22566788
Q ss_pred CCeEEeecCCCeEEEEEccccceeee-eecccCceEEEEEecCCCCceEEEecCCCCCCccccCCCCCCCCcEEEeeeCC
Q 000725 1214 SGLGIIGTNDGLVYAWELSSGNKLGI-LHHFKGGTVSCIATDDSGLQALAVAGDGPDGGRRQRDPRHGQNDHVRIWKMDP 1292 (1329)
Q Consensus 1214 G~~gfaGT~DGlVYmWDLstG~kL~t-L~~Heg~rVSCVA~dps~p~~~AsA~d~~d~~~r~~~~~~s~D~~VRiW~~~~ 1292 (1329)
|..++.|..-|.+...|+.+|+.++. |.+..| .++.|-+||+.+- +|+| |.|.-|||++.+.
T Consensus 259 gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tG-sirsih~hp~~~~-las~---------------GLDRyvRIhD~kt 321 (412)
T KOG3881|consen 259 GNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITG-SIRSIHCHPTHPV-LASC---------------GLDRYVRIHDIKT 321 (412)
T ss_pred CcEEEEecccchhheecccCceeeccccCCccC-CcceEEEcCCCce-EEee---------------ccceeEEEeeccc
Confidence 89999999999999999999999998 899999 8999999988875 9999 8999999999887
No 198
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.37 E-value=0.00015 Score=80.15 Aligned_cols=267 Identities=18% Similarity=0.223 Sum_probs=165.3
Q ss_pred cceeeecCCCcEEEEecCccCccccCCCccccccccccccC-CCCcEEEEEecC--cceeeeEEEecc-cceeEEEEe-c
Q 000725 947 RSCALFTPDGQYLVLLDSMKTPYCREGRSDCLCSTCTSHRL-DENAVKIVKVKP--GYVSVVAKLKTD-DCVQCILVC-E 1021 (1329)
Q Consensus 947 rsglqFTPDGQ~LvLlgsik~p~CR~~~~dC~Cs~C~~s~s-eDNtVKIv~V~~--G~vsll~kL~~h-~sV~cIlVc-D 1021 (1329)
-+-|.++|||++|. +....+ +++.|-.|.+.. |.++++.+.... ..-..|.+. |
T Consensus 39 Ps~l~~~~~~~~LY---------------------~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~ 97 (345)
T PF10282_consen 39 PSWLAVSPDGRRLY---------------------VVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPD 97 (345)
T ss_dssp ECCEEE-TTSSEEE---------------------EEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTT
T ss_pred CceEEEEeCCCEEE---------------------EEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecC
Confidence 35688999999998 112222 678999999876 888888888765 444556666 8
Q ss_pred CCeEEEec-CCCeEEEEeccC-cceEEEeeeee-----cC-CCCcccceeEEEecCCCCC-eeEecCCCccEEEEEcccc
Q 000725 1022 PKHLIAVG-ESGKLHLWEMNS-SWSAQVEECII-----PI-NDCIYPCIVEMKRIPKCAP-LVVGHNGFGEFGIWDISKR 1092 (1329)
Q Consensus 1022 pnhLVSaS-dDGkL~IWDM~S-gWsm~tee~Vi-----~~-n~~v~p~I~elKrFpkss~-lIVTgSGDgtf~LWDIskg 1092 (1329)
.++|+.+- .+|.|.++++.. |.....-..+. |. ..-..+-...+ .|.+++. +++..-|...+.+|++...
T Consensus 98 g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v-~~~pdg~~v~v~dlG~D~v~~~~~~~~ 176 (345)
T PF10282_consen 98 GRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQV-VFSPDGRFVYVPDLGADRVYVYDIDDD 176 (345)
T ss_dssp SSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEE-EE-TTSSEEEEEETTTTEEEEEEE-TT
T ss_pred CCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeE-EECCCCCEEEEEecCCCEEEEEEEeCC
Confidence 88887775 699999999987 55555433221 11 11245556666 6667655 6677888889999999887
Q ss_pred c--e--eeeec--cCccceeE-ecccc-----ccccccCcceEECc--chhhhcccccc----cccc--CCCceeecCCC
Q 000725 1093 V--L--VSRFS--AARASIYQ-FFPIN-----LFSWQRNGSVSMDA--SLELTNTATTS----LFSK--HSEKSSFCPSV 1152 (1329)
Q Consensus 1093 ~--l--lqsF~--ahs~sV~s-fsP~~-----s~S~d~~v~tfd~~--s~d~~leatv~----~fSg--dvn~VsF~P~s 1152 (1329)
. + ...+. .-+++-.- |.|++ ...+...|.+|.+. .+..+..++.. .+.+ ....+.++|
T Consensus 177 ~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~isp-- 254 (345)
T PF10282_consen 177 TGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISP-- 254 (345)
T ss_dssp S-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-T--
T ss_pred CceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEec--
Confidence 6 4 23333 33333333 99997 56678888999888 44333111111 1222 122388999
Q ss_pred CccceEEEEeecc-CccchhhcccccccCCCCcceeEEEeeeccceec-CCCCCCCceeeecCCCeEEeec-CCCeEEEE
Q 000725 1153 GEDSAIWLLVSTI-SDSDAQHNCMSRDCQKNPVRFWRLALLVKNRVIL-GSPLDPRASAIGASSGLGIIGT-NDGLVYAW 1229 (1329)
Q Consensus 1153 GeD~AiwLLVST~-Sdd~t~~Dlra~~~~gH~n~~wRLALl~K~siI~-Gs~ldpra~afs~SG~~gfaGT-~DGlVYmW 1229 (1329)
| +.+|+||.. .+.+..|++...+ | +|.+. ..+=. |. =||..+++++|++++.+. .++.|.+|
T Consensus 255 --d-g~~lyvsnr~~~sI~vf~~d~~~--g------~l~~~--~~~~~~G~--~Pr~~~~s~~g~~l~Va~~~s~~v~vf 319 (345)
T PF10282_consen 255 --D-GRFLYVSNRGSNSISVFDLDPAT--G------TLTLV--QTVPTGGK--FPRHFAFSPDGRYLYVANQDSNTVSVF 319 (345)
T ss_dssp --T-SSEEEEEECTTTEEEEEEECTTT--T------TEEEE--EEEEESSS--SEEEEEE-TTSSEEEEEETTTTEEEEE
T ss_pred --C-CCEEEEEeccCCEEEEEEEecCC--C------ceEEE--EEEeCCCC--CccEEEEeCCCCEEEEEecCCCeEEEE
Confidence 8 899999884 5567778884321 1 12211 11112 33 399999999999988665 77899999
Q ss_pred Ecc--ccceeeeeecccCceEEEEE
Q 000725 1230 ELS--SGNKLGILHHFKGGTVSCIA 1252 (1329)
Q Consensus 1230 DLs--tG~kL~tL~~Heg~rVSCVA 1252 (1329)
++. +|.-...-+...-....||.
T Consensus 320 ~~d~~tG~l~~~~~~~~~~~p~ci~ 344 (345)
T PF10282_consen 320 DIDPDTGKLTPVGSSVPIPSPVCIV 344 (345)
T ss_dssp EEETTTTEEEEEEEEEESSSEEEEE
T ss_pred EEeCCCCcEEEecccccCCCCEEEe
Confidence 874 55533222223433566765
No 199
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=98.37 E-value=3.6e-06 Score=93.62 Aligned_cols=212 Identities=15% Similarity=0.255 Sum_probs=137.3
Q ss_pred ccceeeecCCCcEEEEecCccCccccCCCccccccccccccCCCCcEEEEEecCcceeeeEEEecc------cceeEEEE
Q 000725 946 ERSCALFTPDGQYLVLLDSMKTPYCREGRSDCLCSTCTSHRLDENAVKIVKVKPGYVSVVAKLKTD------DCVQCILV 1019 (1329)
Q Consensus 946 ersglqFTPDGQ~LvLlgsik~p~CR~~~~dC~Cs~C~~s~seDNtVKIv~V~~G~vsll~kL~~h------~sV~cIlV 1019 (1329)
...+|-|-|++..|+ +-.||.|-+|+...+.- .++.+..- ..+.+=.|
T Consensus 125 ~i~cvew~Pns~kla-------------------------sm~dn~i~l~~l~ess~-~vaev~ss~s~e~~~~ftsg~W 178 (370)
T KOG1007|consen 125 KINCVEWEPNSDKLA-------------------------SMDDNNIVLWSLDESSK-IVAEVLSSESAEMRHSFTSGAW 178 (370)
T ss_pred ceeeEEEcCCCCeeE-------------------------EeccCceEEEEcccCcc-hheeecccccccccceeccccc
Confidence 457899999999999 33599999999988762 13333222 44555556
Q ss_pred e---cCCeEEEecCCCeEEEEeccCcceEEEeeeeecCCCCcccceeEEEecC-CCCCeeEecCCCccEEEEEccccce-
Q 000725 1020 C---EPKHLIAVGESGKLHLWEMNSSWSAQVEECIIPINDCIYPCIVEMKRIP-KCAPLVVGHNGFGEFGIWDISKRVL- 1094 (1329)
Q Consensus 1020 c---DpnhLVSaSdDGkL~IWDM~SgWsm~tee~Vi~~n~~v~p~I~elKrFp-kss~lIVTgSGDgtf~LWDIskg~l- 1094 (1329)
+ |.+.+.+.+ |++|.-||..| |.+.+ ..++-|++.+-.| -|+ +-.+.|+||+-||.++|||.++-+.
T Consensus 179 spHHdgnqv~tt~-d~tl~~~D~RT---~~~~~---sI~dAHgq~vrdl-DfNpnkq~~lvt~gDdgyvriWD~R~tk~p 250 (370)
T KOG1007|consen 179 SPHHDGNQVATTS-DSTLQFWDLRT---MKKNN---SIEDAHGQRVRDL-DFNPNKQHILVTCGDDGYVRIWDTRKTKFP 250 (370)
T ss_pred CCCCccceEEEeC-CCcEEEEEccc---hhhhc---chhhhhcceeeec-cCCCCceEEEEEcCCCccEEEEeccCCCcc
Confidence 6 666666665 99999999774 44444 1223477888888 554 4567889999999999999998776
Q ss_pred eeeeccCccceeE--eccccccccccCcceEECcchhhh-cccccccccc-----CCCceeecCCCCccceEEEEeeccC
Q 000725 1095 VSRFSAARASIYQ--FFPINLFSWQRNGSVSMDASLELT-NTATTSLFSK-----HSEKSSFCPSVGEDSAIWLLVSTIS 1166 (1329)
Q Consensus 1095 lqsF~ahs~sV~s--fsP~~s~S~d~~v~tfd~~s~d~~-leatv~~fSg-----dvn~VsF~P~sGeD~AiwLLVST~S 1166 (1329)
+++.++|+-=|++ |.|..- -+--+++-|.. +.-+.+.+|. ..+..+=.+ ++|
T Consensus 251 v~el~~HsHWvW~VRfn~~hd-------qLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e--~~d----------- 310 (370)
T KOG1007|consen 251 VQELPGHSHWVWAVRFNPEHD-------QLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESE--DED----------- 310 (370)
T ss_pred ccccCCCceEEEEEEecCccc-------eEEEecCCCceeEEEeccccccccccccccccccCc--chh-----------
Confidence 9999999999999 999861 12223333333 2333344442 001011111 112
Q ss_pred ccch---hhcccccccCCCCcceeEEEeeeccceecCCCCCCCceeeecCCCeEEe
Q 000725 1167 DSDA---QHNCMSRDCQKNPVRFWRLALLVKNRVILGSPLDPRASAIGASSGLGII 1219 (1329)
Q Consensus 1167 dd~t---~~Dlra~~~~gH~n~~wRLALl~K~siI~Gs~ldpra~afs~SG~~gfa 1219 (1329)
.-++ +.|-.+.+|+-|--.+|.+|--.-+--||.+ +|..||.++.
T Consensus 311 seer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFAS--------LSYDGRviIs 358 (370)
T KOG1007|consen 311 SEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFAS--------LSYDGRVIIS 358 (370)
T ss_pred hHHhcccccccccccccccccceEEEeeccCCCeeEEE--------eccCceEEee
Confidence 1112 3566677999999999998864444444433 6666666654
No 200
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=98.36 E-value=1.2e-06 Score=106.01 Aligned_cols=175 Identities=17% Similarity=0.258 Sum_probs=130.5
Q ss_pred cchhhhhhcccCccceeeeec-----ccccceeeeeeccCCeEEEEEEeccccccceEEEEEEeeeCCCCCCCCceeecc
Q 000725 854 QKNVECINELAGTFDLMGCYF-----FPLPILSVLLSTTGDKIYVCVSCGFLVDKKRTLFIYTVDIQEPRVGNPSCVGHT 928 (1329)
Q Consensus 854 ~~~~~~~n~l~~~~~l~g~y~-----HpmpVlsv~l~t~~~ei~IcVlCG~L~~~~r~Lf~Yki~i~~~~~~~p~~vg~t 928 (1329)
|+-+.--++..++ ...|+|| |-=||--|-|+.-++-. .-+ -..|..++.+|.
T Consensus 113 qsLl~r~k~~~~~-~~~~s~~~~~h~~~~~~~~~sl~s~~~~~---------~~h----------~~a~~i~~at~~--- 169 (1113)
T KOG0644|consen 113 QSLLRRAKDIRHT-VWKGSAFRWPHMHADQVRGVSLRSIGGGF---------EIH----------HRAPSIGCATFS--- 169 (1113)
T ss_pred HHHHhhhhhcccc-cccccccccccccCcccccceeccCCcch---------hhh----------hcCcccccceee---
Confidence 3333334555555 6777775 44577767676655421 112 234455555543
Q ss_pred cccccccc---ccccccccccc---ceeeecCCCcEEEEecCccCccccCCCccccccccccccCCCCcEEEEEecCcce
Q 000725 929 SVMLPFLK---DNFGREIALER---SCALFTPDGQYLVLLDSMKTPYCREGRSDCLCSTCTSHRLDENAVKIVKVKPGYV 1002 (1329)
Q Consensus 929 ~~llp~~~---~~~~~~~~~er---sglqFTPDGQ~LvLlgsik~p~CR~~~~dC~Cs~C~~s~seDNtVKIv~V~~G~v 1002 (1329)
+-.|..- -.+.+.+..-| -++.|---|.|++ .+|+|..||||+.++++
T Consensus 170 -~akPgtmvqkmk~ikrLlgH~naVyca~fDrtg~~Ii------------------------tgsdd~lvKiwS~et~~- 223 (1113)
T KOG0644|consen 170 -IAKPGTMVQKMKNIKRLLGHRNAVYCAIFDRTGRYII------------------------TGSDDRLVKIWSMETAR- 223 (1113)
T ss_pred -ecCcHHHHHHHHHHHHHHhhhhheeeeeeccccceEe------------------------ecCccceeeeeeccchh-
Confidence 2223222 22334444444 5668888899999 99999999999999999
Q ss_pred eeeEEEecc-cceeEEEEe-cCCeEEEecCCCeEEEEeccCcceEEEeeeeecCCCCcccceeEEEecCCCCCeeEecCC
Q 000725 1003 SVVAKLKTD-DCVQCILVC-EPKHLIAVGESGKLHLWEMNSSWSAQVEECIIPINDCIYPCIVEMKRIPKCAPLVVGHNG 1080 (1329)
Q Consensus 1003 sll~kL~~h-~sV~cIlVc-DpnhLVSaSdDGkL~IWDM~SgWsm~tee~Vi~~n~~v~p~I~elKrFpkss~lIVTgSG 1080 (1329)
+++.+-|| +.+.+.+|. .+..++|+|-|.-|++|-++.+--+...+ +|...|-.+ .|.+-. +.+-
T Consensus 224 -~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLr-------ghtgavtai-afsP~~----sss~ 290 (1113)
T KOG0644|consen 224 -CLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLR-------GHTGAVTAI-AFSPRA----SSSD 290 (1113)
T ss_pred -hhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHh-------ccccceeee-ccCccc----cCCC
Confidence 99999999 999999999 88899999999999999999999999888 999999999 888755 7899
Q ss_pred CccEEEEEcc
Q 000725 1081 FGEFGIWDIS 1090 (1329)
Q Consensus 1081 Dgtf~LWDIs 1090 (1329)
||||++||-.
T Consensus 291 dgt~~~wd~r 300 (1113)
T KOG0644|consen 291 DGTCRIWDAR 300 (1113)
T ss_pred CCceEecccc
Confidence 9999999987
No 201
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.33 E-value=8.6e-05 Score=81.46 Aligned_cols=252 Identities=13% Similarity=0.036 Sum_probs=141.1
Q ss_pred cCCCCcEEEEEecCcceeeeEEEeccccee-EEEEecCCeEEEecCCCeEEEEeccCcceEEEeeeeecCCCCcccceeE
Q 000725 986 RLDENAVKIVKVKPGYVSVVAKLKTDDCVQ-CILVCEPKHLIAVGESGKLHLWEMNSSWSAQVEECIIPINDCIYPCIVE 1064 (1329)
Q Consensus 986 ~seDNtVKIv~V~~G~vsll~kL~~h~sV~-cIlVcDpnhLVSaSdDGkL~IWDM~SgWsm~tee~Vi~~n~~v~p~I~e 1064 (1329)
++.++.|.-++.++|. ++=++.....+. .+++ +...++.++.||+|.-||+.+|-.+-...+ ......+.++
T Consensus 71 ~~~~g~v~a~d~~tG~--~~W~~~~~~~~~~~p~v-~~~~v~v~~~~g~l~ald~~tG~~~W~~~~---~~~~~~~p~v- 143 (377)
T TIGR03300 71 ADADGTVVALDAETGK--RLWRVDLDERLSGGVGA-DGGLVFVGTEKGEVIALDAEDGKELWRAKL---SSEVLSPPLV- 143 (377)
T ss_pred ECCCCeEEEEEccCCc--EeeeecCCCCcccceEE-cCCEEEEEcCCCEEEEEECCCCcEeeeecc---CceeecCCEE-
Confidence 4456778888888887 554444443332 3333 566777788899999999999855443331 1111111121
Q ss_pred EEecCCCCCeeEecCCCccEEEEEccccceeeeeccCccceeE---ecccc------ccccccCcceEECcchhhhcc-c
Q 000725 1065 MKRIPKCAPLVVGHNGFGEFGIWDISKRVLVSRFSAARASIYQ---FFPIN------LFSWQRNGSVSMDASLELTNT-A 1134 (1329)
Q Consensus 1065 lKrFpkss~lIVTgSGDgtf~LWDIskg~llqsF~ahs~sV~s---fsP~~------s~S~d~~v~tfd~~s~d~~le-a 1134 (1329)
.+..|+-++.+|.+..||.++|+.+-.+......+.. -.|.- .++.++.+..++..+++..-. .
T Consensus 144 ------~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~~~~~g~v~ald~~tG~~~W~~~ 217 (377)
T TIGR03300 144 ------ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVLVGFAGGKLVALDLQTGQPLWEQR 217 (377)
T ss_pred ------ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEEEECCCCEEEEEEccCCCEeeeec
Confidence 1335555678999999999999998777654332110 11111 223345555566555554410 0
Q ss_pred ccccccc-CCC---ceeecCCCCccceEEEEeeccCccchhhcccccccCCCCcceeEEEeeeccceecCCCCCCCceee
Q 000725 1135 TTSLFSK-HSE---KSSFCPSVGEDSAIWLLVSTISDSDAQHNCMSRDCQKNPVRFWRLALLVKNRVILGSPLDPRASAI 1210 (1329)
Q Consensus 1135 tv~~fSg-dvn---~VsF~P~sGeD~AiwLLVST~Sdd~t~~Dlra~~~~gH~n~~wRLALl~K~siI~Gs~ldpra~af 1210 (1329)
...+... +.. .+.-.|.-.+ -.+++++.+...+++|...- ...|+... +. ....
T Consensus 218 ~~~~~g~~~~~~~~~~~~~p~~~~---~~vy~~~~~g~l~a~d~~tG------~~~W~~~~--------~~-----~~~p 275 (377)
T TIGR03300 218 VALPKGRTELERLVDVDGDPVVDG---GQVYAVSYQGRVAALDLRSG------RVLWKRDA--------SS-----YQGP 275 (377)
T ss_pred cccCCCCCchhhhhccCCccEEEC---CEEEEEEcCCEEEEEECCCC------cEEEeecc--------CC-----ccCc
Confidence 0000000 000 0111231112 25677777888888888632 24576541 22 2344
Q ss_pred ecCCCeEEeecCCCeEEEEEccccceeeeeecccCceEEEEEecCCCCceEEEecCCCCCCccccCC
Q 000725 1211 GASSGLGIIGTNDGLVYAWELSSGNKLGILHHFKGGTVSCIATDDSGLQALAVAGDGPDGGRRQRDP 1277 (1329)
Q Consensus 1211 s~SG~~gfaGT~DGlVYmWDLstG~kL~tL~~Heg~rVSCVA~dps~p~~~AsA~d~~d~~~r~~~~ 1277 (1329)
...+++++.++.||.||.+|..+|+.+-......+..++..++. .+-+.+++ -||.+.+++.
T Consensus 276 ~~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i~---g~~l~~~~--~~G~l~~~d~ 337 (377)
T TIGR03300 276 AVDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAVV---GGYLVVGD--FEGYLHWLSR 337 (377)
T ss_pred eEeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEEE---CCEEEEEe--CCCEEEEEEC
Confidence 56789999999999999999999998866644444234444443 22244442 3455665554
No 202
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.32 E-value=1.1e-06 Score=108.62 Aligned_cols=269 Identities=14% Similarity=0.121 Sum_probs=175.5
Q ss_pred cccccccccccccceeeecCCCcEEEEecCccCccccCCCcccccccccc------ccCCCCcEEEEEecC----cceee
Q 000725 935 LKDNFGREIALERSCALFTPDGQYLVLLDSMKTPYCREGRSDCLCSTCTS------HRLDENAVKIVKVKP----GYVSV 1004 (1329)
Q Consensus 935 ~~~~~~~~~~~ersglqFTPDGQ~LvLlgsik~p~CR~~~~dC~Cs~C~~------s~seDNtVKIv~V~~----G~vsl 1004 (1329)
.+-.|+.+..+|.+-+.|.-.-.-|.+.|++-+-| |=.+.. -|+.|.- -+.+|+.|-+|++.. +.-.+
T Consensus 31 ~D~sfst~~slEifeld~~~~~~dlk~~~s~~s~~-rF~kL~-W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~ 108 (1049)
T KOG0307|consen 31 FDASFSTSASLEIFELDFSDESSDLKPVGSLQSSN-RFNKLA-WGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEV 108 (1049)
T ss_pred cccccccccccceeeecccCccccccccccccccc-cceeee-ecccCCCccceeeccccCCceEEecchhhccCcchHH
Confidence 45678888899999999954433356667776653 111111 1333332 578999999999765 44588
Q ss_pred eEEEecc-cceeEEEEe--cCCeEEEecCCCeEEEEeccCcceEEEeeeeecCCCCcccceeEEEecCC-CCCeeEecCC
Q 000725 1005 VAKLKTD-DCVQCILVC--EPKHLIAVGESGKLHLWEMNSSWSAQVEECIIPINDCIYPCIVEMKRIPK-CAPLVVGHNG 1080 (1329)
Q Consensus 1005 l~kL~~h-~sV~cIlVc--DpnhLVSaSdDGkL~IWDM~SgWsm~tee~Vi~~n~~v~p~I~elKrFpk-ss~lIVTgSG 1080 (1329)
+.++.-| +.|+.+=|. -+|-|+|+++||.|.||||+---+=.+.-... --.-|..| +.++ -.|.+++++.
T Consensus 109 la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~-----~~~eI~~l-sWNrkvqhILAS~s~ 182 (1049)
T KOG0307|consen 109 LATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQA-----PPSEIKCL-SWNRKVSHILASGSP 182 (1049)
T ss_pred HhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCC-----CcccceEe-ccchhhhHHhhccCC
Confidence 9999999 999999999 67799999999999999977511111000000 11124445 5554 3567788999
Q ss_pred CccEEEEEccccceeeeeccCccc----eeEeccccc-----cccc---cCcceEECcchhhh---ccccccccccCCCc
Q 000725 1081 FGEFGIWDISKRVLVSRFSAARAS----IYQFFPINL-----FSWQ---RNGSVSMDASLELT---NTATTSLFSKHSEK 1145 (1329)
Q Consensus 1081 Dgtf~LWDIskg~llqsF~ahs~s----V~sfsP~~s-----~S~d---~~v~tfd~~s~d~~---leatv~~fSgdvn~ 1145 (1329)
+|++.|||+++.+-+-.|..|+.. +.+.-|+.+ .|=| -.|.+||++...-- ++.|...+-+
T Consensus 183 sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~Gils---- 258 (1049)
T KOG0307|consen 183 SGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILS---- 258 (1049)
T ss_pred CCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceee----
Confidence 999999999999888888888884 334788772 1111 13566665444333 2344443333
Q ss_pred eeecCCCCccceEEEEeeccCccchhhccc----ccccCCCCcceeEEEeeeccceecCCCCCCCceeeecCCC-eEEee
Q 000725 1146 SSFCPSVGEDSAIWLLVSTISDSDAQHNCM----SRDCQKNPVRFWRLALLVKNRVILGSPLDPRASAIGASSG-LGIIG 1220 (1329)
Q Consensus 1146 VsF~P~sGeD~AiwLLVST~Sdd~t~~Dlr----a~~~~gH~n~~wRLALl~K~siI~Gs~ldpra~afs~SG~-~gfaG 1220 (1329)
+...| .| .-.||.|.-|..+-|||.. +.++-. ++.|... +-+.+..- .+.+.
T Consensus 259 lsWc~---~D-~~lllSsgkD~~ii~wN~~tgEvl~~~p~--~~nW~fd-----------------v~w~pr~P~~~A~a 315 (1049)
T KOG0307|consen 259 LSWCP---QD-PRLLLSSGKDNRIICWNPNTGEVLGELPA--QGNWCFD-----------------VQWCPRNPSVMAAA 315 (1049)
T ss_pred eccCC---CC-chhhhcccCCCCeeEecCCCceEeeecCC--CCcceee-----------------eeecCCCcchhhhh
Confidence 77777 56 5677777788888889998 455444 3344422 33333333 56677
Q ss_pred cCCCeEEEEEccccceee
Q 000725 1221 TNDGLVYAWELSSGNKLG 1238 (1329)
Q Consensus 1221 T~DGlVYmWDLstG~kL~ 1238 (1329)
|.||.|-+.-|..+....
T Consensus 316 sfdgkI~I~sl~~~~~~~ 333 (1049)
T KOG0307|consen 316 SFDGKISIYSLQGTDTDL 333 (1049)
T ss_pred eeccceeeeeeecCCccc
Confidence 888888888887766443
No 203
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=98.30 E-value=6.2e-06 Score=90.95 Aligned_cols=221 Identities=15% Similarity=0.109 Sum_probs=141.6
Q ss_pred ccCCCCcEEEEEecCcceeeeEEEecc--cceeEEEEecCCeEEEecCCCeEEEEeccCcceEEEee------------e
Q 000725 985 HRLDENAVKIVKVKPGYVSVVAKLKTD--DCVQCILVCEPKHLIAVGESGKLHLWEMNSSWSAQVEE------------C 1050 (1329)
Q Consensus 985 s~seDNtVKIv~V~~G~vsll~kL~~h--~sV~cIlVcDpnhLVSaSdDGkL~IWDM~SgWsm~tee------------~ 1050 (1329)
++.+.+.|++|...+-+ .+..+..| ..|...-..-+..|++=|.|++|++|+..=+-.+..-. +
T Consensus 30 sg~~~G~V~~w~lqt~r--~~~~~r~~g~~~it~lq~~p~d~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl 107 (323)
T KOG0322|consen 30 SGLSVGIVKMWVLQTER--DLPLIRLFGRLFITNLQSIPNDSLDTQGRDPLLILWTIAYSAFISIHSIVVNSLGFCRFSL 107 (323)
T ss_pred cccccceEEEEEeecCc--cchhhhhhccceeeceeecCCcchhhcCCCceEEEEEccCcceEEEeeeecccccccccee
Confidence 78899999999999988 77777755 66666666666999999999999999965532222211 0
Q ss_pred ee-----------cCCCC-c----------------------ccceeEEE-ecCCCCC-eeEecCCCccEEEEEcccc--
Q 000725 1051 II-----------PINDC-I----------------------YPCIVEMK-RIPKCAP-LVVGHNGFGEFGIWDISKR-- 1092 (1329)
Q Consensus 1051 Vi-----------~~n~~-v----------------------~p~I~elK-rFpkss~-lIVTgSGDgtf~LWDIskg-- 1092 (1329)
+. |+-+| + -.++|+.+ -+--..+ +++-|=.+|.+-+||++.+
T Consensus 108 ~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~ 187 (323)
T KOG0322|consen 108 VKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDK 187 (323)
T ss_pred ccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCce
Confidence 00 11111 1 11122221 2222222 4566778999999999999
Q ss_pred --------ceeeeeccCccceeE--ecccc----ccccccCcceEECcc--hhhh----ccccccccccCCCceeecCCC
Q 000725 1093 --------VLVSRFSAARASIYQ--FFPIN----LFSWQRNGSVSMDAS--LELT----NTATTSLFSKHSEKSSFCPSV 1152 (1329)
Q Consensus 1093 --------~llqsF~ahs~sV~s--fsP~~----s~S~d~~v~tfd~~s--~d~~----leatv~~fSgdvn~VsF~P~s 1152 (1329)
.-+.....|..+|++ |-|.- .+..+...-.|++.. +-++ +..++..+++ |+.-|
T Consensus 188 ~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~g----vrIRp-- 261 (323)
T KOG0322|consen 188 IIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSG----VRIRP-- 261 (323)
T ss_pred eeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccc----eEEcc--
Confidence 456777889999998 44332 444555555555432 2222 2455666666 99999
Q ss_pred CccceEEEEeeccCccchhhcccccccCCCCcceeEEEeeeccceecCCCCCCCceeeecCCCeEEeecCCCeEEEEEc
Q 000725 1153 GEDSAIWLLVSTISDSDAQHNCMSRDCQKNPVRFWRLALLVKNRVILGSPLDPRASAIGASSGLGIIGTNDGLVYAWEL 1231 (1329)
Q Consensus 1153 GeD~AiwLLVST~Sdd~t~~Dlra~~~~gH~n~~wRLALl~K~siI~Gs~ldpra~afs~SG~~gfaGT~DGlVYmWDL 1231 (1329)
| .+-+....++--++.|..|.=. -||+|.--+ =|. +++||++...++++++.|+.|-+|+|
T Consensus 262 --D-~KIlATAGWD~RiRVyswrtl~---------pLAVLkyHs--agv----n~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 262 --D-GKILATAGWDHRIRVYSWRTLN---------PLAVLKYHS--AGV----NAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred --C-CcEEeecccCCcEEEEEeccCC---------chhhhhhhh--cce----eEEEeCCCCchhhhccCCceEEeeec
Confidence 6 4434333444444445554222 355555444 344 67999999999999999999999997
No 204
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.28 E-value=2.8e-05 Score=88.45 Aligned_cols=219 Identities=14% Similarity=0.168 Sum_probs=147.4
Q ss_pred ccCCCCcEEEEEecCcceeeeEEEecc-c---ceeEEEEe-cCCeEE--EecCCCeEEEEeccCcceEEEeeeeecCCCC
Q 000725 985 HRLDENAVKIVKVKPGYVSVVAKLKTD-D---CVQCILVC-EPKHLI--AVGESGKLHLWEMNSSWSAQVEECIIPINDC 1057 (1329)
Q Consensus 985 s~seDNtVKIv~V~~G~vsll~kL~~h-~---sV~cIlVc-DpnhLV--SaSdDGkL~IWDM~SgWsm~tee~Vi~~n~~ 1057 (1329)
.|-++. |-|+|++.=. +++++++. + +|...-+. ++.||+ ++-..|.|+|||..+--.+.+.. +
T Consensus 102 V~Lee~-IyIydI~~Mk--lLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~-------a 171 (391)
T KOG2110|consen 102 VCLEES-IYIYDIKDMK--LLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTIN-------A 171 (391)
T ss_pred EEEccc-EEEEecccce--eehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEE-------e
Confidence 455555 9999999955 99999987 3 35555555 666776 34457999999988888888887 9
Q ss_pred cccceeEEEecCCCCCeeEecCCCcc-EEEEEccccceeeeeccCcc--ceeE--ecccc----ccccccCcceEECcch
Q 000725 1058 IYPCIVEMKRIPKCAPLVVGHNGFGE-FGIWDISKRVLVSRFSAARA--SIYQ--FFPIN----LFSWQRNGSVSMDASL 1128 (1329)
Q Consensus 1058 v~p~I~elKrFpkss~lIVTgSGDgt-f~LWDIskg~llqsF~ahs~--sV~s--fsP~~----s~S~d~~v~tfd~~s~ 1128 (1329)
|-..+-+| +|+.++++|+|+|..|| ||+++|..|+++..|--=.. .|++ |+|++ +-|=-++||+|-++..
T Consensus 172 H~~~lAal-afs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 172 HKGPLAAL-AFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKV 250 (391)
T ss_pred cCCceeEE-EECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEeccc
Confidence 99999999 99999999999999999 69999999999999974332 3455 99999 4566788999998877
Q ss_pred hhhc-ccccc---cccc-CCCceeecCCCCccceEEEEeeccCccchhhcccccccCCCCcceeEEEeeeccceecCCCC
Q 000725 1129 ELTN-TATTS---LFSK-HSEKSSFCPSVGEDSAIWLLVSTISDSDAQHNCMSRDCQKNPVRFWRLALLVKNRVILGSPL 1203 (1329)
Q Consensus 1129 d~~l-eatv~---~fSg-dvn~VsF~P~sGeD~AiwLLVST~Sdd~t~~Dlra~~~~gH~n~~wRLALl~K~siI~Gs~l 1203 (1329)
.... +...+ |+.. -..-.+|.|. -++ .--+..+.|..+-=. -..+.
T Consensus 251 ~~~~~~~p~~~~~~~~~~sk~~~sylps---~V~------~~~~~~R~FAt~~l~----~s~~~---------------- 301 (391)
T KOG2110|consen 251 SNNPPESPTAGTSWFGKVSKAATSYLPS---QVS------SVLDQSRKFATAKLP----ESGRK---------------- 301 (391)
T ss_pred ccCCCCCCCCCCcccchhhhhhhhhcch---hhh------hhhhhccceeEEEcc----CCCcc----------------
Confidence 7442 31111 1111 0111223441 111 111112222222000 11111
Q ss_pred CCCceeee--cCCCeEEeecCCCeEEEEEccc--cceeeeeecccC
Q 000725 1204 DPRASAIG--ASSGLGIIGTNDGLVYAWELSS--GNKLGILHHFKG 1245 (1329)
Q Consensus 1204 dpra~afs--~SG~~gfaGT~DGlVYmWDLst--G~kL~tL~~Heg 1245 (1329)
+++.++ ....++..++.||.+|++.|.- |-....+.-|.-
T Consensus 302 --~~~~l~~~~~~~~v~vas~dG~~y~y~l~~~~gGec~lik~h~~ 345 (391)
T KOG2110|consen 302 --NICSLSSIQKIPRVLVASYDGHLYSYRLPPKEGGECALIKRHFL 345 (391)
T ss_pred --ceEEeeccCCCCEEEEEEcCCeEEEEEcCCCCCceeEEEEeecc
Confidence 345555 4889999999999999998864 777777764443
No 205
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.28 E-value=3.6e-05 Score=87.09 Aligned_cols=198 Identities=12% Similarity=0.009 Sum_probs=111.5
Q ss_pred CeEEEEeccCcceEEEeeeeecCCCCcccceeEEEecCCCCCeeEecC---CCccEEEEEccccce--eeeeccCcccee
Q 000725 1032 GKLHLWEMNSSWSAQVEECIIPINDCIYPCIVEMKRIPKCAPLVVGHN---GFGEFGIWDISKRVL--VSRFSAARASIY 1106 (1329)
Q Consensus 1032 GkL~IWDM~SgWsm~tee~Vi~~n~~v~p~I~elKrFpkss~lIVTgS---GDgtf~LWDIskg~l--lqsF~ahs~sV~ 1106 (1329)
.+|.|||...+ ..+... .+...++.. ++.++++.|+..+ ++..+.+||+..|+. +..+.++. ...
T Consensus 184 ~~l~i~D~~g~-~~~~lt-------~~~~~v~~p-~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~-~~~ 253 (433)
T PRK04922 184 YALQVADSDGY-NPQTIL-------RSAEPILSP-AWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGIN-GAP 253 (433)
T ss_pred EEEEEECCCCC-CceEee-------cCCCccccc-cCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCc-cCc
Confidence 36888997543 222221 122345666 8888899888766 445799999998876 33343322 123
Q ss_pred Eecccc---cc--cccc--CcceEECcchhhhccccccccccCCCceeecCCCCccceEEEEeeccC-ccchhhcccccc
Q 000725 1107 QFFPIN---LF--SWQR--NGSVSMDASLELTNTATTSLFSKHSEKSSFCPSVGEDSAIWLLVSTIS-DSDAQHNCMSRD 1178 (1329)
Q Consensus 1107 sfsP~~---s~--S~d~--~v~tfd~~s~d~~leatv~~fSgdvn~VsF~P~sGeD~AiwLLVST~S-dd~t~~Dlra~~ 1178 (1329)
.|+|++ .+ +-++ .+.+|+..+++.+... .. .+.....+|+| | +.+|+.++.. ....+|.+.++.
T Consensus 254 ~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt-~~--~~~~~~~~~sp----D-G~~l~f~sd~~g~~~iy~~dl~~ 325 (433)
T PRK04922 254 SFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTRLT-NH--FGIDTEPTWAP----D-GKSIYFTSDRGGRPQIYRVAASG 325 (433)
T ss_pred eECCCCCEEEEEEeCCCCceEEEEECCCCCeEECc-cC--CCCccceEECC----C-CCEEEEEECCCCCceEEEEECCC
Confidence 499999 23 3344 3566666666544211 11 11223478999 7 7777765432 122233332221
Q ss_pred cCCCCcceeEEEeeeccceecCCCCCCCceeeecCCCeEEeecCC---CeEEEEEccccceeeeeecccCceEEEEEecC
Q 000725 1179 CQKNPVRFWRLALLVKNRVILGSPLDPRASAIGASSGLGIIGTND---GLVYAWELSSGNKLGILHHFKGGTVSCIATDD 1255 (1329)
Q Consensus 1179 ~~gH~n~~wRLALl~K~siI~Gs~ldpra~afs~SG~~gfaGT~D---GlVYmWDLstG~kL~tL~~Heg~rVSCVA~dp 1255 (1329)
...-+| .++. -.....+++++|++++..+.+ ..|++||+.+|+.. .|. +.. .+...+.+|
T Consensus 326 -----g~~~~l--------t~~g-~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~-~~~~p~~sp 388 (433)
T PRK04922 326 -----GSAERL--------TFQG-NYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGS-LDESPSFAP 388 (433)
T ss_pred -----CCeEEe--------ecCC-CCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCC-CCCCceECC
Confidence 111121 1211 123457899999999875543 36999999888755 443 222 345668888
Q ss_pred CCCceEEEe
Q 000725 1256 SGLQALAVA 1264 (1329)
Q Consensus 1256 s~p~~~AsA 1264 (1329)
++.-.+.++
T Consensus 389 dG~~i~~~s 397 (433)
T PRK04922 389 NGSMVLYAT 397 (433)
T ss_pred CCCEEEEEE
Confidence 877633333
No 206
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=98.27 E-value=4.2e-06 Score=91.60 Aligned_cols=111 Identities=8% Similarity=0.017 Sum_probs=87.7
Q ss_pred ccCCCCcEEEEEecCcce-----------eeeEE-EecccceeEEEEe-cCCeEEEecCCCeEEEEeccCcceEEEeeee
Q 000725 985 HRLDENAVKIVKVKPGYV-----------SVVAK-LKTDDCVQCILVC-EPKHLIAVGESGKLHLWEMNSSWSAQVEECI 1051 (1329)
Q Consensus 985 s~seDNtVKIv~V~~G~v-----------sll~k-L~~h~sV~cIlVc-DpnhLVSaSdDGkL~IWDM~SgWsm~tee~V 1051 (1329)
+|++ +-||-|--+.-.- -+.++ +-..+.|+...+- -.|.|..++.|+.++-||+.+|-.-+++.
T Consensus 77 s~gd-G~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~r-- 153 (325)
T KOG0649|consen 77 SGGD-GLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYR-- 153 (325)
T ss_pred eccC-ceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEc--
Confidence 5665 8888876332111 12233 4455888888887 56677777789999999999999999998
Q ss_pred ecCCCCcccceeEEEecCCCCCeeEecCCCccEEEEEccccceeeeeccCccc
Q 000725 1052 IPINDCIYPCIVEMKRIPKCAPLVVGHNGFGEFGIWDISKRVLVSRFSAARAS 1104 (1329)
Q Consensus 1052 i~~n~~v~p~I~elKrFpkss~lIVTgSGDgtf~LWDIskg~llqsF~ahs~s 1104 (1329)
||+-+|.+| .--+...+|+||+.|||.||||..++++++.++.-...
T Consensus 154 -----GHtDYvH~v-v~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~ 200 (325)
T KOG0649|consen 154 -----GHTDYVHSV-VGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNP 200 (325)
T ss_pred -----CCcceeeee-eecccCcceeecCCCccEEEEeccccceeEEeccccCh
Confidence 999999999 55577899999999999999999999999999854443
No 207
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=98.23 E-value=2.4e-06 Score=100.06 Aligned_cols=75 Identities=17% Similarity=0.375 Sum_probs=66.1
Q ss_pred cceeeecCCCcEEEEecCccCccccCCCccccccccccccCCCCcEEEEEecCcceeeeEEEecc-cceeEEEEe-cCCe
Q 000725 947 RSCALFTPDGQYLVLLDSMKTPYCREGRSDCLCSTCTSHRLDENAVKIVKVKPGYVSVVAKLKTD-DCVQCILVC-EPKH 1024 (1329)
Q Consensus 947 rsglqFTPDGQ~LvLlgsik~p~CR~~~~dC~Cs~C~~s~seDNtVKIv~V~~G~vsll~kL~~h-~sV~cIlVc-Dpnh 1024 (1329)
..+.+|+|||+||+ .-|+|+.|||++-.+ .+|+-.++.+ +++.||.|+ |..|
T Consensus 293 in~f~FS~DG~~LA------------------------~VSqDGfLRvF~fdt--~eLlg~mkSYFGGLLCvcWSPDGKy 346 (636)
T KOG2394|consen 293 INEFAFSPDGKYLA------------------------TVSQDGFLRIFDFDT--QELLGVMKSYFGGLLCVCWSPDGKY 346 (636)
T ss_pred ccceeEcCCCceEE------------------------EEecCceEEEeeccH--HHHHHHHHhhccceEEEEEcCCccE
Confidence 44678999999999 679999999999998 5589999999 999999999 9999
Q ss_pred EEEecCCCeEEEEeccCcceEEE
Q 000725 1025 LIAVGESGKLHLWEMNSSWSAQV 1047 (1329)
Q Consensus 1025 LVSaSdDGkL~IWDM~SgWsm~t 1047 (1329)
||++|+|-=|.||-|.-.-++..
T Consensus 347 IvtGGEDDLVtVwSf~erRVVAR 369 (636)
T KOG2394|consen 347 IVTGGEDDLVTVWSFEERRVVAR 369 (636)
T ss_pred EEecCCcceEEEEEeccceEEEe
Confidence 99999999999999776544443
No 208
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.23 E-value=0.00012 Score=83.40 Aligned_cols=239 Identities=15% Similarity=0.179 Sum_probs=159.0
Q ss_pred eeeecccccceeeeeeccCCeEEEEEEeccccccceEEEEEEeeeCCCCCCCCceeecccccccccccccccccccccce
Q 000725 870 MGCYFFPLPILSVLLSTTGDKIYVCVSCGFLVDKKRTLFIYTVDIQEPRVGNPSCVGHTSVMLPFLKDNFGREIALERSC 949 (1329)
Q Consensus 870 ~g~y~HpmpVlsv~l~t~~~ei~IcVlCG~L~~~~r~Lf~Yki~i~~~~~~~p~~vg~t~~llp~~~~~~~~~~~~ersg 949 (1329)
+--|+.|=|||+|-+|.+ .+-+| |+++ +|+|.|.-=.. =||=-+.|. ....-..
T Consensus 81 ICe~~fpt~IL~VrmNr~--RLvV~-----Lee~---IyIydI~~Mkl--------LhTI~t~~~--------n~~gl~A 134 (391)
T KOG2110|consen 81 ICEIFFPTSILAVRMNRK--RLVVC-----LEES---IYIYDIKDMKL--------LHTIETTPP--------NPKGLCA 134 (391)
T ss_pred EEEEecCCceEEEEEccc--eEEEE-----Eccc---EEEEeccccee--------ehhhhccCC--------CccceEe
Confidence 346889999999999975 33333 6665 99999853221 133222211 1122233
Q ss_pred eeecCCCcEEEEecCccCccccCCCccccccccccccCCCCcEEEEEecCcceeeeEEEecc-cceeEEEEe-cCCeEEE
Q 000725 950 ALFTPDGQYLVLLDSMKTPYCREGRSDCLCSTCTSHRLDENAVKIVKVKPGYVSVVAKLKTD-DCVQCILVC-EPKHLIA 1027 (1329)
Q Consensus 950 lqFTPDGQ~LvLlgsik~p~CR~~~~dC~Cs~C~~s~seDNtVKIv~V~~G~vsll~kL~~h-~sV~cIlVc-DpnhLVS 1027 (1329)
+.+++.+-||++=|| | ..+-|.|||+.. +..+.++.+| +.|.|++|. |+..|++
T Consensus 135 lS~n~~n~ylAyp~s------~----------------t~GdV~l~d~~n--l~~v~~I~aH~~~lAalafs~~G~llAT 190 (391)
T KOG2110|consen 135 LSPNNANCYLAYPGS------T----------------TSGDVVLFDTIN--LQPVNTINAHKGPLAALAFSPDGTLLAT 190 (391)
T ss_pred eccCCCCceEEecCC------C----------------CCceEEEEEccc--ceeeeEEEecCCceeEEEECCCCCEEEE
Confidence 445667779995432 2 267799999998 5599999999 999999999 9999999
Q ss_pred ecCCCeE-EEEeccCcceEEEeeeeecCCCCccc-ceeEEEecCCCCCeeEecCCCccEEEEEccccceeeeeccCccce
Q 000725 1028 VGESGKL-HLWEMNSSWSAQVEECIIPINDCIYP-CIVEMKRIPKCAPLVVGHNGFGEFGIWDISKRVLVSRFSAARASI 1105 (1329)
Q Consensus 1028 aSdDGkL-~IWDM~SgWsm~tee~Vi~~n~~v~p-~I~elKrFpkss~lIVTgSGDgtf~LWDIskg~llqsF~ahs~sV 1105 (1329)
||+-|+| +|+.+++|-...-++ +|+++ .|..+ .|.++++.+..-|.-+|+-|+-+++.. ...-+
T Consensus 191 ASeKGTVIRVf~v~~G~kl~eFR------RG~~~~~IySL-~Fs~ds~~L~~sS~TeTVHiFKL~~~~-~~~~~------ 256 (391)
T KOG2110|consen 191 ASEKGTVIRVFSVPEGQKLYEFR------RGTYPVSIYSL-SFSPDSQFLAASSNTETVHIFKLEKVS-NNPPE------ 256 (391)
T ss_pred eccCceEEEEEEcCCccEeeeee------CCceeeEEEEE-EECCCCCeEEEecCCCeEEEEEecccc-cCCCC------
Confidence 9999997 489999998887777 45443 46778 999999999999999999999999887 33333
Q ss_pred eEeccccccccccCcceEECc----chhhh----c--cccccccccCCCceeecCCCCccceEEEEeeccCccchhhccc
Q 000725 1106 YQFFPINLFSWQRNGSVSMDA----SLELT----N--TATTSLFSKHSEKSSFCPSVGEDSAIWLLVSTISDSDAQHNCM 1175 (1329)
Q Consensus 1106 ~sfsP~~s~S~d~~v~tfd~~----s~d~~----l--eatv~~fSgdvn~VsF~P~sGeD~AiwLLVST~Sdd~t~~Dlr 1175 (1329)
+|....+|-+.+.-..++ .+... | ..-..++++..+.+.|.+. +. ...++|.|-|..-+-|.+-
T Consensus 257 ---~p~~~~~~~~~~sk~~~sylps~V~~~~~~~R~FAt~~l~~s~~~~~~~l~~~--~~-~~~v~vas~dG~~y~y~l~ 330 (391)
T KOG2110|consen 257 ---SPTAGTSWFGKVSKAATSYLPSQVSSVLDQSRKFATAKLPESGRKNICSLSSI--QK-IPRVLVASYDGHLYSYRLP 330 (391)
T ss_pred ---CCCCCCcccchhhhhhhhhcchhhhhhhhhccceeEEEccCCCccceEEeecc--CC-CCEEEEEEcCCeEEEEEcC
Confidence 233323333333332232 22222 2 2223345555566777751 23 4577877777777766666
Q ss_pred ccc
Q 000725 1176 SRD 1178 (1329)
Q Consensus 1176 a~~ 1178 (1329)
.++
T Consensus 331 ~~~ 333 (391)
T KOG2110|consen 331 PKE 333 (391)
T ss_pred CCC
Confidence 654
No 209
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=98.22 E-value=4.3e-05 Score=85.32 Aligned_cols=259 Identities=13% Similarity=0.144 Sum_probs=188.8
Q ss_pred CCCcEEEEEecCcceeeeEEEecc--cceeEEEEe--cCCeEEEec----CC---CeEEEEeccCcce---EEEeeeee-
Q 000725 988 DENAVKIVKVKPGYVSVVAKLKTD--DCVQCILVC--EPKHLIAVG----ES---GKLHLWEMNSSWS---AQVEECII- 1052 (1329)
Q Consensus 988 eDNtVKIv~V~~G~vsll~kL~~h--~sV~cIlVc--DpnhLVSaS----dD---GkL~IWDM~SgWs---m~tee~Vi- 1052 (1329)
.||-|.+-+...+.-+++.+-.-| +.|-.|.-| |++.|.++= +. -+..||.|+---. ..+.|.|+
T Consensus 38 ~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~ 117 (370)
T KOG1007|consen 38 EDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVAS 117 (370)
T ss_pred CcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhc
Confidence 579999999998888888776666 999999999 999998873 34 3567998764322 23455555
Q ss_pred cCCCCcccceeEEEecCCCCCeeEecCCCccEEEEEccccce-eeeeccCccceeE-------ecccc-----ccccccC
Q 000725 1053 PINDCIYPCIVEMKRIPKCAPLVVGHNGFGEFGIWDISKRVL-VSRFSAARASIYQ-------FFPIN-----LFSWQRN 1119 (1329)
Q Consensus 1053 ~~n~~v~p~I~elKrFpkss~lIVTgSGDgtf~LWDIskg~l-lqsF~ahs~sV~s-------fsP~~-----s~S~d~~ 1119 (1329)
+|+--|+ .|.+| .+-+++..+++=. |..|.+|+++.+.. ++...+....=++ .+|-. .-.-+++
T Consensus 118 Ldteavg-~i~cv-ew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~t 194 (370)
T KOG1007|consen 118 LDTEAVG-KINCV-EWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDST 194 (370)
T ss_pred CCHHHhC-ceeeE-EEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeCCCc
Confidence 5655566 67777 6666666666665 99999999999888 6665554443322 55622 3345778
Q ss_pred cceEECcchhhh---ccccccccccCCCceeecCCCCccceEEEEeeccCcc-chhhccc-----ccccCCCCcceeEEE
Q 000725 1120 GSVSMDASLELT---NTATTSLFSKHSEKSSFCPSVGEDSAIWLLVSTISDS-DAQHNCM-----SRDCQKNPVRFWRLA 1190 (1329)
Q Consensus 1120 v~tfd~~s~d~~---leatv~~fSgdvn~VsF~P~sGeD~AiwLLVST~Sdd-~t~~Dlr-----a~~~~gH~n~~wRLA 1190 (1329)
+..||.++-.+. ..||.|.|.. +-|-| . -..+||+.++|- .++||.| ..+..+|.-|.|.+.
T Consensus 195 l~~~D~RT~~~~~sI~dAHgq~vrd----lDfNp----n-kq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VR 265 (370)
T KOG1007|consen 195 LQFWDLRTMKKNNSIEDAHGQRVRD----LDFNP----N-KQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVR 265 (370)
T ss_pred EEEEEccchhhhcchhhhhcceeee----ccCCC----C-ceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEE
Confidence 899999977776 3589998877 88888 5 678898877764 3459999 778889999999966
Q ss_pred eeeccceecCCCCCCCceeeecCCCeEEeecCCCeEEEEEccccc-----------------------------eeeeee
Q 000725 1191 LLVKNRVILGSPLDPRASAIGASSGLGIIGTNDGLVYAWELSSGN-----------------------------KLGILH 1241 (1329)
Q Consensus 1191 Ll~K~siI~Gs~ldpra~afs~SG~~gfaGT~DGlVYmWDLstG~-----------------------------kL~tL~ 1241 (1329)
. --.-..++.+|+.|-.|.+|=-++-. .|.+..
T Consensus 266 f------------------n~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tyd 327 (370)
T KOG1007|consen 266 F------------------NPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYD 327 (370)
T ss_pred e------------------cCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhccccccccccccc
Confidence 3 12346788899999999999543322 345667
Q ss_pred cccCceEEEEEecCCCCceEEEecCCCCCCccccCCCCCCCCcEEEeeeCC
Q 000725 1242 HFKGGTVSCIATDDSGLQALAVAGDGPDGGRRQRDPRHGQNDHVRIWKMDP 1292 (1329)
Q Consensus 1242 ~Heg~rVSCVA~dps~p~~~AsA~d~~d~~~r~~~~~~s~D~~VRiW~~~~ 1292 (1329)
-|++ .|-|+|-+-.+|=-+|+= |-||.|-|=.+++
T Consensus 328 ehED-SVY~~aWSsadPWiFASL---------------SYDGRviIs~V~r 362 (370)
T KOG1007|consen 328 EHED-SVYALAWSSADPWIFASL---------------SYDGRVIISSVPR 362 (370)
T ss_pred cccc-ceEEEeeccCCCeeEEEe---------------ccCceEEeecCCh
Confidence 8999 999999998889766665 7777777755544
No 210
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.22 E-value=0.00018 Score=78.96 Aligned_cols=239 Identities=14% Similarity=0.047 Sum_probs=139.0
Q ss_pred ccCCCCcEEEEEecCcceeeeEEEecccceeEEEEecCCeEEEecCCCeEEEEeccCcceEEEeeeeecCC--CC-cccc
Q 000725 985 HRLDENAVKIVKVKPGYVSVVAKLKTDDCVQCILVCEPKHLIAVGESGKLHLWEMNSSWSAQVEECIIPIN--DC-IYPC 1061 (1329)
Q Consensus 985 s~seDNtVKIv~V~~G~vsll~kL~~h~sV~cIlVcDpnhLVSaSdDGkL~IWDM~SgWsm~tee~Vi~~n--~~-v~p~ 1061 (1329)
.++.++.|..++.++|. ++-+....+.+.+..+-+..+++.+..||+|..||..+|-.+-....-.+.. .. ..|.
T Consensus 110 v~~~~g~l~ald~~tG~--~~W~~~~~~~~~~~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~ 187 (377)
T TIGR03300 110 VGTEKGEVIALDAEDGK--ELWRAKLSSEVLSPPLVANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPV 187 (377)
T ss_pred EEcCCCEEEEEECCCCc--EeeeeccCceeecCCEEECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCE
Confidence 35567889999999998 6655555555555444455677777889999999999884333322111100 01 1111
Q ss_pred eeEEEecCCCCCeeEecCCCccEEEEEccccceeeeeccCcc----------ceeEecc---cc---ccccccCcceEEC
Q 000725 1062 IVEMKRIPKCAPLVVGHNGFGEFGIWDISKRVLVSRFSAARA----------SIYQFFP---IN---LFSWQRNGSVSMD 1125 (1329)
Q Consensus 1062 I~elKrFpkss~lIVTgSGDgtf~LWDIskg~llqsF~ahs~----------sV~sfsP---~~---s~S~d~~v~tfd~ 1125 (1329)
+ . +..|+.++.+|++..+|.++|+.+-++..... .+.+ .| .+ ..++++.+..|+.
T Consensus 188 ~--~------~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~-~p~~~~~~vy~~~~~g~l~a~d~ 258 (377)
T TIGR03300 188 I--A------DGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDG-DPVVDGGQVYAVSYQGRVAALDL 258 (377)
T ss_pred E--E------CCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCC-ccEEECCEEEEEEcCCEEEEEEC
Confidence 1 1 23667778889999999999998755432110 0000 11 11 3456777777887
Q ss_pred cchhhhccccccccccCCCceeecCCCCccceEEEEeeccCccchhhcccccccCCCCcceeEEEeeeccceecCCCCCC
Q 000725 1126 ASLELTNTATTSLFSKHSEKSSFCPSVGEDSAIWLLVSTISDSDAQHNCMSRDCQKNPVRFWRLALLVKNRVILGSPLDP 1205 (1329)
Q Consensus 1126 ~s~d~~leatv~~fSgdvn~VsF~P~sGeD~AiwLLVST~Sdd~t~~Dlra~~~~gH~n~~wRLALl~K~siI~Gs~ldp 1205 (1329)
.+++..-... +.. .-.| .-. +-.|++.+.+....++|....+ ..|+..- ++..
T Consensus 259 ~tG~~~W~~~---~~~-----~~~p-~~~--~~~vyv~~~~G~l~~~d~~tG~------~~W~~~~-------~~~~--- 311 (377)
T TIGR03300 259 RSGRVLWKRD---ASS-----YQGP-AVD--DNRLYVTDADGVVVALDRRSGS------ELWKNDE-------LKYR--- 311 (377)
T ss_pred CCCcEEEeec---cCC-----ccCc-eEe--CCEEEEECCCCeEEEEECCCCc------EEEcccc-------ccCC---
Confidence 7776551100 111 1122 111 2356666767777778875332 3465421 1110
Q ss_pred CceeeecCCCeEEeecCCCeEEEEEccccceeeeeecccCceEEEEEecCCCCceEEEe
Q 000725 1206 RASAIGASSGLGIIGTNDGLVYAWELSSGNKLGILHHFKGGTVSCIATDDSGLQALAVA 1264 (1329)
Q Consensus 1206 ra~afs~SG~~gfaGT~DGlVYmWDLstG~kL~tL~~Heg~rVSCVA~dps~p~~~AsA 1264 (1329)
-.......|++++.|+.||.||+||..+|+.+.++..+.+.-.+.-++. .+.+-++
T Consensus 312 ~~ssp~i~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~---~~~l~v~ 367 (377)
T TIGR03300 312 QLTAPAVVGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVV---GDGLLVQ 367 (377)
T ss_pred ccccCEEECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEE---CCEEEEE
Confidence 0112233588999999999999999999999999998775223333333 2235566
No 211
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=98.20 E-value=1.6e-05 Score=90.85 Aligned_cols=209 Identities=11% Similarity=0.128 Sum_probs=147.1
Q ss_pred EEecc-cceeEEEEe-cCCeEEEecCCCeEEEEeccCcceEEEeeeeecCCCCcccceeEEEecCCCCCeeEecCCCccE
Q 000725 1007 KLKTD-DCVQCILVC-EPKHLIAVGESGKLHLWEMNSSWSAQVEECIIPINDCIYPCIVEMKRIPKCAPLVVGHNGFGEF 1084 (1329)
Q Consensus 1007 kL~~h-~sV~cIlVc-DpnhLVSaSdDGkL~IWDM~SgWsm~tee~Vi~~n~~v~p~I~elKrFpkss~lIVTgSGDgtf 1084 (1329)
.|.+| ++|..|-++ ..+.|||+|+|+.+.+|.|.-.-+-++-.-|-.----|-+.|++| .|.---..|.+|.-+|++
T Consensus 51 D~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L-~F~~~N~~~~SG~~~~~V 129 (609)
T KOG4227|consen 51 DVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSL-EFDLENRFLYSGERWGTV 129 (609)
T ss_pred hhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEE-EEccCCeeEecCCCccee
Confidence 35678 999999999 889999999999999999887666555332222112266899999 999999999999999999
Q ss_pred EEEEccccceeeeeccCcc---ceeE--ecccc----ccccccCcceEECcchhhh----c-cccccccccCCCceeecC
Q 000725 1085 GIWDISKRVLVSRFSAARA---SIYQ--FFPIN----LFSWQRNGSVSMDASLELT----N-TATTSLFSKHSEKSSFCP 1150 (1329)
Q Consensus 1085 ~LWDIskg~llqsF~ahs~---sV~s--fsP~~----s~S~d~~v~tfd~~s~d~~----l-eatv~~fSgdvn~VsF~P 1150 (1329)
-+-||++.+.+-.|. |.+ +||. ..|+. ..+-++.|.+|+.+.---. + .--...|-. +-|+|
T Consensus 130 I~HDiEt~qsi~V~~-~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t----~~F~P 204 (609)
T KOG4227|consen 130 IKHDIETKQSIYVAN-ENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYT----AEFHP 204 (609)
T ss_pred Eeeecccceeeeeec-ccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCcccee----eeecC
Confidence 999999999998875 444 8988 77876 3445666777776654322 1 223334444 88999
Q ss_pred CCCccceEEEEeeccCccchhhccccc-----ccCCCCcceeEEEeeeccceecCCCCCCCceeeecCCCeEEeecCCCe
Q 000725 1151 SVGEDSAIWLLVSTISDSDAQHNCMSR-----DCQKNPVRFWRLALLVKNRVILGSPLDPRASAIGASSGLGIIGTNDGL 1225 (1329)
Q Consensus 1151 ~sGeD~AiwLLVST~Sdd~t~~Dlra~-----~~~gH~n~~wRLALl~K~siI~Gs~ldpra~afs~SG~~gfaGT~DGl 1225 (1329)
..-..|||..--.-.-+||+|.. +|.++.. |-..++-.||+ -++++|.-+.+=--..+
T Consensus 205 ----~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~------L~~~~~~~M~~-------~~~~~G~Q~msiRR~~~ 267 (609)
T KOG4227|consen 205 ----ETPALILVNSETGGPNVFDRRMQARPVYQRSMFKG------LPQENTEWMGS-------LWSPSGNQFMSIRRGKC 267 (609)
T ss_pred ----CCceeEEeccccCCCCceeeccccchHHhhhcccc------Ccccchhhhhe-------eeCCCCCeehhhhccCC
Confidence 33566775555555566999933 3333221 11112233444 68889998888777777
Q ss_pred EEEEEccccceee
Q 000725 1226 VYAWELSSGNKLG 1238 (1329)
Q Consensus 1226 VYmWDLstG~kL~ 1238 (1329)
=-++|+-+.++..
T Consensus 268 P~~~D~~S~R~~V 280 (609)
T KOG4227|consen 268 PLYFDFISQRCFV 280 (609)
T ss_pred CEEeeeeccccee
Confidence 7888988865543
No 212
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=98.19 E-value=5e-05 Score=92.72 Aligned_cols=269 Identities=14% Similarity=0.191 Sum_probs=163.1
Q ss_pred ceeeecCCCcEEEEecCccCccccCCCccccccccccccCCCCcEEEEEecCcceeeeEEEecc-cceeEEEEe---cC-
Q 000725 948 SCALFTPDGQYLVLLDSMKTPYCREGRSDCLCSTCTSHRLDENAVKIVKVKPGYVSVVAKLKTD-DCVQCILVC---EP- 1022 (1329)
Q Consensus 948 sglqFTPDGQ~LvLlgsik~p~CR~~~~dC~Cs~C~~s~seDNtVKIv~V~~G~vsll~kL~~h-~sV~cIlVc---Dp- 1022 (1329)
.-..|++|+++|+ +--.|.|+|+.+.||- .++.|..| ..|-.+.+- ++
T Consensus 20 ~~avfSnD~k~l~-------------------------~~~~~~V~VyS~~Tg~--~i~~l~~~~a~l~s~~~~~~~~~~ 72 (792)
T KOG1963|consen 20 SPAVFSNDAKFLF-------------------------LCTGNFVKVYSTATGE--CITSLEDHTAPLTSVIVLPSSENA 72 (792)
T ss_pred cccccccCCcEEE-------------------------EeeCCEEEEEecchHh--hhhhcccccCccceeeecCCCccc
Confidence 4467999999999 2236899999999998 99999999 999988887 44
Q ss_pred CeEEEecCCCeEEEEeccCcceEEEeeeeecCCCC-cccceeEEEecCCCCCeeEecCCCccEEEEEccc-------cce
Q 000725 1023 KHLIAVGESGKLHLWEMNSSWSAQVEECIIPINDC-IYPCIVEMKRIPKCAPLVVGHNGFGEFGIWDISK-------RVL 1094 (1329)
Q Consensus 1023 nhLVSaSdDGkL~IWDM~SgWsm~tee~Vi~~n~~-v~p~I~elKrFpkss~lIVTgSGDgtf~LWDIsk-------g~l 1094 (1329)
.++..++.||.|.+||-.-+-..++.+ +.+ +...++..+-+-++ .++-.|.+-.+.+-=.+. +-.
T Consensus 73 ~~~~~~sl~G~I~vwd~~~~~Llkt~~-----~~~~v~~~~~~~~~a~~s--~~~~~s~~~~~~~~~~s~~~~~q~~~~~ 145 (792)
T KOG1963|consen 73 NYLIVCSLDGTIRVWDWSDGELLKTFD-----NNLPVHALVYKPAQADIS--ANVYVSVEDYSILTTFSKKLSKQSSRFV 145 (792)
T ss_pred eEEEEEecCccEEEecCCCcEEEEEEe-----cCCceeEEEechhHhCcc--ceeEeecccceeeeecccccccceeeeE
Confidence 789999999999999988888888887 222 11111111011111 222222222222221111 111
Q ss_pred eeeeccCccceeE---------ecccc---ccccccCcceEECcchhhh---cc-ccccccccCCCceeecCCCCccceE
Q 000725 1095 VSRFSAARASIYQ---------FFPIN---LFSWQRNGSVSMDASLELT---NT-ATTSLFSKHSEKSSFCPSVGEDSAI 1158 (1329)
Q Consensus 1095 lqsF~ahs~sV~s---------fsP~~---s~S~d~~v~tfd~~s~d~~---le-atv~~fSgdvn~VsF~P~sGeD~Ai 1158 (1329)
+.+|..+..++.. ++|.+ .--..-.+++|......++ +. .-.|.|- ..-++|+| .|.-+|
T Consensus 146 ~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~--~t~~~~sp-n~~~~A- 221 (792)
T KOG1963|consen 146 LATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFN--ITCVALSP-NERYLA- 221 (792)
T ss_pred eeeccccchhhhhhhcCCccEEEcCCceEEEEEEeeeEEEEEecccceeeccchhhhhhccc--ceeEEecc-ccceEE-
Confidence 3333333333222 23332 0001112233333332233 22 2222231 33388998 444434
Q ss_pred EEEeeccCccchh---hccc-ccccCCCCcceeEEEeeeccceecCCCCCCCceeeecCCCeEEeecCCCeEEEEEcccc
Q 000725 1159 WLLVSTISDSDAQ---HNCM-SRDCQKNPVRFWRLALLVKNRVILGSPLDPRASAIGASSGLGIIGTNDGLVYAWELSSG 1234 (1329)
Q Consensus 1159 wLLVST~Sdd~t~---~Dlr-a~~~~gH~n~~wRLALl~K~siI~Gs~ldpra~afs~SG~~gfaGT~DGlVYmWDLstG 1234 (1329)
+++.+.+. .|.. .++-..|+-.+|--+- ++ ..+|+++|.|+.+|...|.+-+|.+-|+
T Consensus 222 -----a~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~-------V~------~L~fS~~G~~LlSGG~E~VLv~Wq~~T~ 283 (792)
T KOG1963|consen 222 -----AGDSDGRILVWRDFGSSDDSETCTLLHWHHDE-------VN------SLSFSSDGAYLLSGGREGVLVLWQLETG 283 (792)
T ss_pred -----EeccCCcEEEEeccccccccccceEEEecccc-------cc------eeEEecCCceEeecccceEEEEEeecCC
Confidence 66666666 4555 4555567777787442 22 3899999999999999999999999999
Q ss_pred ceeeeeecccCceEEEEEecCCCCceEEEecCCCCCCccccCCCCCCCCcEEEeee
Q 000725 1235 NKLGILHHFKGGTVSCIATDDSGLQALAVAGDGPDGGRRQRDPRHGQNDHVRIWKM 1290 (1329)
Q Consensus 1235 ~kL~tL~~Heg~rVSCVA~dps~p~~~AsA~d~~d~~~r~~~~~~s~D~~VRiW~~ 1290 (1329)
++ .=|--=.. .+.-++++|+..- .|+. =+|++|.+-++
T Consensus 284 ~k-qfLPRLgs-~I~~i~vS~ds~~-~sl~---------------~~DNqI~li~~ 321 (792)
T KOG1963|consen 284 KK-QFLPRLGS-PILHIVVSPDSDL-YSLV---------------LEDNQIHLIKA 321 (792)
T ss_pred Cc-ccccccCC-eeEEEEEcCCCCe-EEEE---------------ecCceEEEEec
Confidence 83 22223333 8999999976655 5665 35888888887
No 213
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.17 E-value=2.3e-05 Score=97.15 Aligned_cols=269 Identities=13% Similarity=0.110 Sum_probs=149.0
Q ss_pred CCcEEEEEec--CcceeeeEEEecccceeEEEEecCCeEEEecCCCeEEEEeccCcceEEEeeeeecCCCCcccceeEEE
Q 000725 989 ENAVKIVKVK--PGYVSVVAKLKTDDCVQCILVCEPKHLIAVGESGKLHLWEMNSSWSAQVEECIIPINDCIYPCIVEMK 1066 (1329)
Q Consensus 989 DNtVKIv~V~--~G~vsll~kL~~h~sV~cIlVcDpnhLVSaSdDGkL~IWDM~SgWsm~tee~Vi~~n~~v~p~I~elK 1066 (1329)
.++|--|+-+ +|..-+-.+++-|+==.| |+++.+--+|.|||-.-+-+...+.--++...+|+ -+++
T Consensus 1049 t~~i~~W~~~~~~~n~~~pk~~~~hpf~p~--------i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs--~l~l- 1117 (1387)
T KOG1517|consen 1049 TNPIGNWDQKFMTGNNQPPKTLKFHPFEPQ--------IAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVS--DLEL- 1117 (1387)
T ss_pred cccccchHHHHHhcCCCCCceeeecCCCce--------eEEcCCcceEEEEecccCceeccccCCCCCCCccc--eeee-
Confidence 4455567743 333223344444432223 44455566899999877766555542222222232 2233
Q ss_pred ecCCCCCeeEecCCCccEEEEEc-----cccceeeeeccCccceeEecccc---ccccc------------cCcceEECc
Q 000725 1067 RIPKCAPLVVGHNGFGEFGIWDI-----SKRVLVSRFSAARASIYQFFPIN---LFSWQ------------RNGSVSMDA 1126 (1329)
Q Consensus 1067 rFpkss~lIVTgSGDgtf~LWDI-----skg~llqsF~ahs~sV~sfsP~~---s~S~d------------~~v~tfd~~ 1126 (1329)
.=-.+..++++||.||.|+||+= .+-.++..+.+-++-. ..+.+ ...|| +.|++||..
T Consensus 1118 iNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~--~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~ 1195 (1387)
T KOG1517|consen 1118 INEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQL--PGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAH 1195 (1387)
T ss_pred ecccchhheeeeccCceEEEecccccccCCceeEEeeccccccC--ccCCCCCeeeehhhhCCeEEecCCeeEEEEEecc
Confidence 22235789999999999999963 4455677776554432 33333 34443 234445443
Q ss_pred chhhhccccccccccCCCceeecCCCCccceEEEEeeccCccchhhcccccccCCCCcceeEEEeeeccceecCCCCCCC
Q 000725 1127 SLELTNTATTSLFSKHSEKSSFCPSVGEDSAIWLLVSTISDSDAQHNCMSRDCQKNPVRFWRLALLVKNRVILGSPLDPR 1206 (1329)
Q Consensus 1127 s~d~~leatv~~fSgdvn~VsF~P~sGeD~AiwLLVST~Sdd~t~~Dlra~~~~gH~n~~wRLALl~K~siI~Gs~ldpr 1206 (1329)
.--+.. ..++....---++++ .-.. +--|.+|-+|...+.||.|+..-+ -....||=- -.++. |++.-|-++
T Consensus 1196 ~E~~~~---diP~~s~t~vTaLS~-~~~~-gn~i~AGfaDGsvRvyD~R~a~~d-s~v~~~R~h-~~~~~-Iv~~slq~~ 1267 (1387)
T KOG1517|consen 1196 KEQVVA---DIPYGSSTLVTALSA-DLVH-GNIIAAGFADGSVRVYDRRMAPPD-SLVCVYREH-NDVEP-IVHLSLQRQ 1267 (1387)
T ss_pred cceeEe---ecccCCCccceeecc-cccC-CceEEEeecCCceEEeecccCCcc-ccceeeccc-CCccc-ceeEEeecC
Confidence 211110 011111000011222 1112 577889999999999999943211 244555511 11111 555433222
Q ss_pred ceeeecCCCeEEeecCCCeEEEEEccccceeeee--eccc--CceEEEEEecCCCCceEEEecCCCCCCccccCCCCCCC
Q 000725 1207 ASAIGASSGLGIIGTNDGLVYAWELSSGNKLGIL--HHFK--GGTVSCIATDDSGLQALAVAGDGPDGGRRQRDPRHGQN 1282 (1329)
Q Consensus 1207 a~afs~SG~~gfaGT~DGlVYmWDLstG~kL~tL--~~He--g~rVSCVA~dps~p~~~AsA~d~~d~~~r~~~~~~s~D 1282 (1329)
- =+.+|+|+-||.|++||+-.-.+...+ -.|- |..+||+.+|+--+. +|+| |.
T Consensus 1268 G------~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapi-iAsG---------------s~- 1324 (1387)
T KOG1517|consen 1268 G------LGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPI-IASG---------------SA- 1324 (1387)
T ss_pred C------CcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCe-eeec---------------Cc-
Confidence 1 137999999999999999775554444 3444 546999999977776 8888 45
Q ss_pred CcEEEeeeCCCcceeecCC
Q 000725 1283 DHVRIWKMDPNLGCVRNSN 1301 (1329)
Q Consensus 1283 ~~VRiW~~~~~~~~~~~~~ 1301 (1329)
+.|+||....++--++-.|
T Consensus 1325 q~ikIy~~~G~~l~~~k~n 1343 (1387)
T KOG1517|consen 1325 QLIKIYSLSGEQLNIIKYN 1343 (1387)
T ss_pred ceEEEEecChhhhcccccC
Confidence 8899998887654333333
No 214
>smart00541 FYRN "FY-rich" domain, N-terminal region. is sometimes closely juxtaposed with the C-terminal region (FYRC), but sometimes is far distant. Unknown function, but occurs frequently in chromatin-associated proteins.
Probab=98.17 E-value=1.3e-06 Score=73.21 Aligned_cols=33 Identities=21% Similarity=0.354 Sum_probs=27.2
Q ss_pred ccccccccCCCCCCcccCCceeEEeeecc-------ceEEEEEE
Q 000725 34 WEKKYWSSSRGKDRYPYPVGYHAVQAHNG-------STCKMEIH 70 (1329)
Q Consensus 34 wdrkywsSSr~~dRYIyPVGY~A~Rky~s-------t~YkMEIl 70 (1329)
++++.||+ ++||||+||+|+|.|.| +.|.|.|+
T Consensus 4 ~~~~~fh~----~~~IyP~Gy~s~R~y~S~~dp~~~c~Y~c~i~ 43 (44)
T smart00541 4 IQGKLFHS----EDAIFPVGYKSTRKYWSVKDPNRRCNYSCVID 43 (44)
T ss_pred ccCCCccc----CCEEecCCEEEEEEEecccCCCCEEEEEEEEC
Confidence 57789966 88999999999999987 46966554
No 215
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.16 E-value=0.00011 Score=83.07 Aligned_cols=260 Identities=14% Similarity=0.086 Sum_probs=149.0
Q ss_pred ccCCCCcEEEEEecCcceeeeEEEecccceeEEE-Ee-cCCeEEEecCCCeEEEEeccCcceEEEeeeeecCCCCcccce
Q 000725 985 HRLDENAVKIVKVKPGYVSVVAKLKTDDCVQCIL-VC-EPKHLIAVGESGKLHLWEMNSSWSAQVEECIIPINDCIYPCI 1062 (1329)
Q Consensus 985 s~seDNtVKIv~V~~G~vsll~kL~~h~sV~cIl-Vc-DpnhLVSaSdDGkL~IWDM~SgWsm~tee~Vi~~n~~v~p~I 1062 (1329)
.-.++|.|.|+|.++.. ++.++.+...++..+ ++ |.+++..++.||.|.+||+.+.-.+++.. ++..-
T Consensus 11 ~~~~~~~v~viD~~t~~--~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~--------~G~~~ 80 (369)
T PF02239_consen 11 VERGSGSVAVIDGATNK--VVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIK--------VGGNP 80 (369)
T ss_dssp EEGGGTEEEEEETTT-S--EEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE---------SSEE
T ss_pred EecCCCEEEEEECCCCe--EEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEe--------cCCCc
Confidence 34578999999999966 999999987787755 55 89999999999999999999998887766 23333
Q ss_pred eEEEecCCCCCeeEecC-CCccEEEEEccccceeeeeccCccc-------eeE--ecccc---ccccccCcceEECcchh
Q 000725 1063 VEMKRIPKCAPLVVGHN-GFGEFGIWDISKRVLVSRFSAARAS-------IYQ--FFPIN---LFSWQRNGSVSMDASLE 1129 (1329)
Q Consensus 1063 ~elKrFpkss~lIVTgS-GDgtf~LWDIskg~llqsF~ahs~s-------V~s--fsP~~---s~S~d~~v~tfd~~s~d 1129 (1329)
..+ .+.+++.+|+.++ ..+++.|+|.++.+.++++...+.. |.+ .+|.. .+++-+...+|.+.-.+
T Consensus 81 ~~i-~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d 159 (369)
T PF02239_consen 81 RGI-AVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSD 159 (369)
T ss_dssp EEE-EE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTT
T ss_pred ceE-EEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecc
Confidence 445 7788888777665 6899999999999999998876432 222 23443 46677777777554333
Q ss_pred hh-c-----cccccccccCCCceeecCCCCccceEEEEee-ccCccchhhcccccccCCCCcceeEEEeeeccceecCCC
Q 000725 1130 LT-N-----TATTSLFSKHSEKSSFCPSVGEDSAIWLLVS-TISDSDAQHNCMSRDCQKNPVRFWRLALLVKNRVILGSP 1202 (1329)
Q Consensus 1130 ~~-l-----eatv~~fSgdvn~VsF~P~sGeD~AiwLLVS-T~Sdd~t~~Dlra~~~~gH~n~~wRLALl~K~siI~Gs~ 1202 (1329)
.. + ..-..++ . .-|.| | +..+|++ ..++.....|..... .++++ =.|..
T Consensus 160 ~~~~~~~~i~~g~~~~-D----~~~dp----d-gry~~va~~~sn~i~viD~~~~k---------~v~~i-----~~g~~ 215 (369)
T PF02239_consen 160 PKNLKVTTIKVGRFPH-D----GGFDP----D-GRYFLVAANGSNKIAVIDTKTGK---------LVALI-----DTGKK 215 (369)
T ss_dssp SSCEEEEEEE--TTEE-E----EEE-T----T-SSEEEEEEGGGTEEEEEETTTTE---------EEEEE-----E-SSS
T ss_pred ccccceeeeccccccc-c----cccCc----c-cceeeecccccceeEEEeeccce---------EEEEe-----ecccc
Confidence 22 1 1112222 2 45777 5 6677764 445555556665332 22211 01221
Q ss_pred C---------CCCc---eeeecCCCeEEeecCCCeEEEEEccccceeeeeecccCceEEEEEecCCCCceEEEecCCCCC
Q 000725 1203 L---------DPRA---SAIGASSGLGIIGTNDGLVYAWELSSGNKLGILHHFKGGTVSCIATDDSGLQALAVAGDGPDG 1270 (1329)
Q Consensus 1203 l---------dpra---~afs~SG~~gfaGT~DGlVYmWDLstG~kL~tL~~Heg~rVSCVA~dps~p~~~AsA~d~~d~ 1270 (1329)
- +|.. -+.+-.|...++-.....|.+||..+.+.+.++..-.++ --|++||..+. +.+..-
T Consensus 216 p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g--lFi~thP~s~~-vwvd~~---- 288 (369)
T PF02239_consen 216 PHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG--LFIKTHPDSRY-VWVDTF---- 288 (369)
T ss_dssp BEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS----EE--TT-SE-EEEE-T----
T ss_pred ccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc--ceeecCCCCcc-EEeecc----
Confidence 1 2222 112222333323333346778999999999999987664 58899999887 444410
Q ss_pred CccccCCCCCCCCcEEEeeeCCC
Q 000725 1271 GRRQRDPRHGQNDHVRIWKMDPN 1293 (1329)
Q Consensus 1271 ~~r~~~~~~s~D~~VRiW~~~~~ 1293 (1329)
-...+++|-|+++...
T Consensus 289 -------~~~~~~~v~viD~~tl 304 (369)
T PF02239_consen 289 -------LNPDADTVQVIDKKTL 304 (369)
T ss_dssp -------T-SSHT-EEEEECCGT
T ss_pred -------CCCCCceEEEEECcCc
Confidence 0011467777776543
No 216
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.16 E-value=0.00015 Score=82.14 Aligned_cols=214 Identities=10% Similarity=0.035 Sum_probs=125.3
Q ss_pred CCcEEEEEecCcceeeeEEEecc-cceeEEEEe-cCCeEEEecC---CCeEEEEeccCcceEEEeeeeecCCCCccccee
Q 000725 989 ENAVKIVKVKPGYVSVVAKLKTD-DCVQCILVC-EPKHLIAVGE---SGKLHLWEMNSSWSAQVEECIIPINDCIYPCIV 1063 (1329)
Q Consensus 989 DNtVKIv~V~~G~vsll~kL~~h-~sV~cIlVc-DpnhLVSaSd---DGkL~IWDM~SgWsm~tee~Vi~~n~~v~p~I~ 1063 (1329)
...|.+|+...+. .+.|..+ ..+.+..|+ |.++|+.++. +.+|.+||+.++...+... ..+ .+.
T Consensus 181 ~~~l~~~d~dg~~---~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~-----~~g---~~~ 249 (435)
T PRK05137 181 IKRLAIMDQDGAN---VRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGN-----FPG---MTF 249 (435)
T ss_pred ceEEEEECCCCCC---cEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeec-----CCC---ccc
Confidence 4578888886655 4556667 789999999 9999998864 5789999999987654332 111 233
Q ss_pred EEEecCCCCCee-EecCCCcc--EEEEEccccceeeeeccCcccee--Eecccc---ccccc--c--CcceEECcchhhh
Q 000725 1064 EMKRIPKCAPLV-VGHNGFGE--FGIWDISKRVLVSRFSAARASIY--QFFPIN---LFSWQ--R--NGSVSMDASLELT 1131 (1329)
Q Consensus 1064 elKrFpkss~lI-VTgSGDgt--f~LWDIskg~llqsF~ahs~sV~--sfsP~~---s~S~d--~--~v~tfd~~s~d~~ 1131 (1329)
.. +|.+++..| ++.+.++. +-+||++++.+.+ +..+...+. +|+|++ .|.-+ | .+.+++..+.+.+
T Consensus 250 ~~-~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~-Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~ 327 (435)
T PRK05137 250 AP-RFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTR-LTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR 327 (435)
T ss_pred Cc-EECCCCCEEEEEEecCCCceEEEEECCCCceEE-ccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE
Confidence 44 788888765 46666655 6667999887644 444444333 399998 22222 2 2334444433333
Q ss_pred ccccccccccCCCceeecCCCCccceEEEEeeccCcc---chhhcccccccCCCCcceeEEEeeeccceecCCCCCCCce
Q 000725 1132 NTATTSLFSKHSEKSSFCPSVGEDSAIWLLVSTISDS---DAQHNCMSRDCQKNPVRFWRLALLVKNRVILGSPLDPRAS 1208 (1329)
Q Consensus 1132 leatv~~fSgdvn~VsF~P~sGeD~AiwLLVST~Sdd---~t~~Dlra~~~~gH~n~~wRLALl~K~siI~Gs~ldpra~ 1208 (1329)
+.. ...+......|+| | +.+|++.+.... +..+|+... .++ ++.. | -+....
T Consensus 328 ~lt---~~~~~~~~~~~Sp----d-G~~ia~~~~~~~~~~i~~~d~~~~--------~~~--~lt~-----~--~~~~~p 382 (435)
T PRK05137 328 RIS---FGGGRYSTPVWSP----R-GDLIAFTKQGGGQFSIGVMKPDGS--------GER--ILTS-----G--FLVEGP 382 (435)
T ss_pred Eee---cCCCcccCeEECC----C-CCEEEEEEcCCCceEEEEEECCCC--------ceE--eccC-----C--CCCCCC
Confidence 210 0122344578999 6 677766554322 122332111 111 1111 1 133557
Q ss_pred eeecCCCeEEeecCC------CeEEEEEccccceeeeee
Q 000725 1209 AIGASSGLGIIGTND------GLVYAWELSSGNKLGILH 1241 (1329)
Q Consensus 1209 afs~SG~~gfaGT~D------GlVYmWDLstG~kL~tL~ 1241 (1329)
.++++|++++..+.+ ..+|+.|+..+.. ..|.
T Consensus 383 ~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~ 420 (435)
T PRK05137 383 TWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE-REVP 420 (435)
T ss_pred eECCCCCEEEEEEccCCCCCcceEEEEECCCCce-EEcc
Confidence 899999987654432 3689999865543 3443
No 217
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=98.12 E-value=2e-05 Score=81.40 Aligned_cols=119 Identities=14% Similarity=0.290 Sum_probs=85.3
Q ss_pred CCceeecCCCCccceEEEEeeccCccchhhcccccccCCCCcceeEEEeeeccceecCCCCCCCceeeecCCCeEEeecC
Q 000725 1143 SEKSSFCPSVGEDSAIWLLVSTISDSDAQHNCMSRDCQKNPVRFWRLALLVKNRVILGSPLDPRASAIGASSGLGIIGTN 1222 (1329)
Q Consensus 1143 vn~VsF~P~sGeD~AiwLLVST~Sdd~t~~Dlra~~~~gH~n~~wRLALl~K~siI~Gs~ldpra~afs~SG~~gfaGT~ 1222 (1329)
+..+++.| .|+-|| ++.+..+...++||++.+. +.- ||. -..+.+.++|.|++++.|+.
T Consensus 62 I~~~~WsP-~g~~fa--vi~g~~~~~v~lyd~~~~~----------i~~-------~~~-~~~n~i~wsP~G~~l~~~g~ 120 (194)
T PF08662_consen 62 IHDVAWSP-NGNEFA--VIYGSMPAKVTLYDVKGKK----------IFS-------FGT-QPRNTISWSPDGRFLVLAGF 120 (194)
T ss_pred eEEEEECc-CCCEEE--EEEccCCcccEEEcCcccE----------eEe-------ecC-CCceEEEECCCCCEEEEEEc
Confidence 44499999 555544 2334445567779986332 111 121 11245899999999999876
Q ss_pred C---CeEEEEEccccceeeeeecccCceEEEEEecCCCCceEEEecCCCCCCccccCCCCCCCCcEEEeeeCCCcc
Q 000725 1223 D---GLVYAWELSSGNKLGILHHFKGGTVSCIATDDSGLQALAVAGDGPDGGRRQRDPRHGQNDHVRIWKMDPNLG 1295 (1329)
Q Consensus 1223 D---GlVYmWDLstG~kL~tL~~Heg~rVSCVA~dps~p~~~AsA~d~~d~~~r~~~~~~s~D~~VRiW~~~~~~~ 1295 (1329)
+ |.|++||+.+.+++.+.++ .+ ++.++-+|++.- +|+|+. +||+..|+.++||.....+=
T Consensus 121 ~n~~G~l~~wd~~~~~~i~~~~~-~~--~t~~~WsPdGr~-~~ta~t---------~~r~~~dng~~Iw~~~G~~l 183 (194)
T PF08662_consen 121 GNLNGDLEFWDVRKKKKISTFEH-SD--ATDVEWSPDGRY-LATATT---------SPRLRVDNGFKIWSFQGRLL 183 (194)
T ss_pred cCCCcEEEEEECCCCEEeecccc-Cc--EEEEEEcCCCCE-EEEEEe---------ccceeccccEEEEEecCeEe
Confidence 5 5599999999999988764 44 789999999988 777743 57899999999999976643
No 218
>PRK03629 tolB translocation protein TolB; Provisional
Probab=98.11 E-value=0.00021 Score=81.48 Aligned_cols=181 Identities=14% Similarity=0.179 Sum_probs=107.5
Q ss_pred ccccceeeeeeccCCeEEEEEEeccccccceEEEEEEeeeCCCCCCCCceeecccccccccccccccccccccceeeecC
Q 000725 875 FPLPILSVLLSTTGDKIYVCVSCGFLVDKKRTLFIYTVDIQEPRVGNPSCVGHTSVMLPFLKDNFGREIALERSCALFTP 954 (1329)
Q Consensus 875 HpmpVlsv~l~t~~~ei~IcVlCG~L~~~~r~Lf~Yki~i~~~~~~~p~~vg~t~~llp~~~~~~~~~~~~ersglqFTP 954 (1329)
++.++.+...+-.|+.|... . .......||+|.+. .|.+..+ ..+ + +. -..++|+|
T Consensus 197 ~~~~~~~p~wSPDG~~la~~-s---~~~g~~~i~i~dl~-----~G~~~~l------~~~-~----~~----~~~~~~SP 252 (429)
T PRK03629 197 SPQPLMSPAWSPDGSKLAYV-T---FESGRSALVIQTLA-----NGAVRQV------ASF-P----RH----NGAPAFSP 252 (429)
T ss_pred CCCceeeeEEcCCCCEEEEE-E---ecCCCcEEEEEECC-----CCCeEEc------cCC-C----CC----cCCeEECC
Confidence 67788888888888775433 2 23345678887753 2333311 111 1 11 12479999
Q ss_pred CCcEEEEecCccCccccCCCccccccccccccCCCCcEEEEEecCcceeeeEEEecc-cceeEEEEe-cCCeEEEecCC-
Q 000725 955 DGQYLVLLDSMKTPYCREGRSDCLCSTCTSHRLDENAVKIVKVKPGYVSVVAKLKTD-DCVQCILVC-EPKHLIAVGES- 1031 (1329)
Q Consensus 955 DGQ~LvLlgsik~p~CR~~~~dC~Cs~C~~s~seDNtVKIv~V~~G~vsll~kL~~h-~sV~cIlVc-DpnhLVSaSdD- 1031 (1329)
||++|++..+- .....|.+|++++|.. +.|..+ ..+....|+ |.++|+.++++
T Consensus 253 DG~~La~~~~~---------------------~g~~~I~~~d~~tg~~---~~lt~~~~~~~~~~wSPDG~~I~f~s~~~ 308 (429)
T PRK03629 253 DGSKLAFALSK---------------------TGSLNLYVMDLASGQI---RQVTDGRSNNTEPTWFPDSQNLAYTSDQA 308 (429)
T ss_pred CCCEEEEEEcC---------------------CCCcEEEEEECCCCCE---EEccCCCCCcCceEECCCCCEEEEEeCCC
Confidence 99999965431 1223589999999873 334433 567788899 99999888765
Q ss_pred CeEEEE--eccCcceEEEeeeeecCCCCcccceeEEEecCCCCCeeEecCC---CccEEEEEccccceeeeeccCcccee
Q 000725 1032 GKLHLW--EMNSSWSAQVEECIIPINDCIYPCIVEMKRIPKCAPLVVGHNG---FGEFGIWDISKRVLVSRFSAARASIY 1106 (1329)
Q Consensus 1032 GkL~IW--DM~SgWsm~tee~Vi~~n~~v~p~I~elKrFpkss~lIVTgSG---Dgtf~LWDIskg~llqsF~ahs~sV~ 1106 (1329)
|..+|| |+.++-..+... . ....... .|.+++..|+..+. ...+.+||++++....--..+.+.-.
T Consensus 309 g~~~Iy~~d~~~g~~~~lt~-----~---~~~~~~~-~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~~~~~~~p 379 (429)
T PRK03629 309 GRPQVYKVNINGGAPQRITW-----E---GSQNQDA-DVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLTDTFLDETP 379 (429)
T ss_pred CCceEEEEECCCCCeEEeec-----C---CCCccCE-EECCCCCEEEEEEccCCCceEEEEECCCCCeEEeCCCCCCCCc
Confidence 455555 555553222211 1 1122234 67788888766443 35688999999875432222222223
Q ss_pred Eecccc
Q 000725 1107 QFFPIN 1112 (1329)
Q Consensus 1107 sfsP~~ 1112 (1329)
+|+|++
T Consensus 380 ~~SpDG 385 (429)
T PRK03629 380 SIAPNG 385 (429)
T ss_pred eECCCC
Confidence 488887
No 219
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.11 E-value=0.00013 Score=83.90 Aligned_cols=115 Identities=9% Similarity=0.078 Sum_probs=69.4
Q ss_pred ceeeecCCCcEEEEecCccCccccCCCccccccccccccCCCCcEEEEEecCcceeeeEEEecccceeEEEEe-cCCeEE
Q 000725 948 SCALFTPDGQYLVLLDSMKTPYCREGRSDCLCSTCTSHRLDENAVKIVKVKPGYVSVVAKLKTDDCVQCILVC-EPKHLI 1026 (1329)
Q Consensus 948 sglqFTPDGQ~LvLlgsik~p~CR~~~~dC~Cs~C~~s~seDNtVKIv~V~~G~vsll~kL~~h~sV~cIlVc-DpnhLV 1026 (1329)
...+|+|||++|++... ......|.+|++.+|....++.+.++ .....|+ |.++|+
T Consensus 221 ~~p~wSPDG~~La~~s~---------------------~~g~~~L~~~dl~tg~~~~lt~~~g~--~~~~~wSPDG~~La 277 (448)
T PRK04792 221 MSPAWSPDGRKLAYVSF---------------------ENRKAEIFVQDIYTQVREKVTSFPGI--NGAPRFSPDGKKLA 277 (448)
T ss_pred cCceECCCCCEEEEEEe---------------------cCCCcEEEEEECCCCCeEEecCCCCC--cCCeeECCCCCEEE
Confidence 46899999999995421 11235789999999986666655544 3467788 999886
Q ss_pred -EecCCCe--EEEEeccCcceEEEeeeeecCCCCcccceeEEEecCCCCCeeEe-cCCCcc--EEEEEccccce
Q 000725 1027 -AVGESGK--LHLWEMNSSWSAQVEECIIPINDCIYPCIVEMKRIPKCAPLVVG-HNGFGE--FGIWDISKRVL 1094 (1329)
Q Consensus 1027 -SaSdDGk--L~IWDM~SgWsm~tee~Vi~~n~~v~p~I~elKrFpkss~lIVT-gSGDgt--f~LWDIskg~l 1094 (1329)
+.+.+|+ |.+||+.++-..+... . .....+. .|.+++..|+- .+.++. +-+||+..|+.
T Consensus 278 ~~~~~~g~~~Iy~~dl~tg~~~~lt~-----~---~~~~~~p-~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~ 342 (448)
T PRK04792 278 LVLSKDGQPEIYVVDIATKALTRITR-----H---RAIDTEP-SWHPDGKSLIFTSERGGKPQIYRVNLASGKV 342 (448)
T ss_pred EEEeCCCCeEEEEEECCCCCeEECcc-----C---CCCccce-EECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence 4566775 7777887764322111 1 1122334 66777766543 333333 44446655543
No 220
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.09 E-value=6.9e-05 Score=82.35 Aligned_cols=177 Identities=14% Similarity=0.125 Sum_probs=103.9
Q ss_pred eeeecCCCcEEEEecCccCccccCCCccccccccccccCCCCcEEEEEecCcceeeeEEEecccceeEEEEe-cCCeEE-
Q 000725 949 CALFTPDGQYLVLLDSMKTPYCREGRSDCLCSTCTSHRLDENAVKIVKVKPGYVSVVAKLKTDDCVQCILVC-EPKHLI- 1026 (1329)
Q Consensus 949 glqFTPDGQ~LvLlgsik~p~CR~~~~dC~Cs~C~~s~seDNtVKIv~V~~G~vsll~kL~~h~sV~cIlVc-DpnhLV- 1026 (1329)
..+|+|||++|++.. .......|.+|++++|....+..+. ..+.++.|+ |.++|+
T Consensus 194 ~p~~Spdg~~la~~~---------------------~~~~~~~i~v~d~~~g~~~~~~~~~--~~~~~~~~spDg~~l~~ 250 (417)
T TIGR02800 194 SPAWSPDGQKLAYVS---------------------FESGKPEIYVQDLATGQREKVASFP--GMNGAPAFSPDGSKLAV 250 (417)
T ss_pred cccCCCCCCEEEEEE---------------------cCCCCcEEEEEECCCCCEEEeecCC--CCccceEECCCCCEEEE
Confidence 456999999999432 1123468999999999754444433 445667788 888775
Q ss_pred EecCCC--eEEEEeccCcceEEEeeeeecCCCCcccceeEEEecCCCCCeeEecCC-C--ccEEEEEccccceeeeeccC
Q 000725 1027 AVGESG--KLHLWEMNSSWSAQVEECIIPINDCIYPCIVEMKRIPKCAPLVVGHNG-F--GEFGIWDISKRVLVSRFSAA 1101 (1329)
Q Consensus 1027 SaSdDG--kL~IWDM~SgWsm~tee~Vi~~n~~v~p~I~elKrFpkss~lIVTgSG-D--gtf~LWDIskg~llqsF~ah 1101 (1329)
+.+.+| .|++||+.++...+... .. ...... .|.+++..|+..+. . ..+-+||+..+.. +.+..+
T Consensus 251 ~~~~~~~~~i~~~d~~~~~~~~l~~-----~~---~~~~~~-~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~-~~l~~~ 320 (417)
T TIGR02800 251 SLSKDGNPDIYVMDLDGKQLTRLTN-----GP---GIDTEP-SWSPDGKSIAFTSDRGGSPQIYMMDADGGEV-RRLTFR 320 (417)
T ss_pred EECCCCCccEEEEECCCCCEEECCC-----CC---CCCCCE-EECCCCCEEEEEECCCCCceEEEEECCCCCE-EEeecC
Confidence 555555 59999999886544332 11 112233 67777887764433 3 3577778877764 334333
Q ss_pred cccee--Eecccc---cccccc----CcceEECcchhhhccccccccccCCCceeecCCCCccceEEEEeeccCc
Q 000725 1102 RASIY--QFFPIN---LFSWQR----NGSVSMDASLELTNTATTSLFSKHSEKSSFCPSVGEDSAIWLLVSTISD 1167 (1329)
Q Consensus 1102 s~sV~--sfsP~~---s~S~d~----~v~tfd~~s~d~~leatv~~fSgdvn~VsF~P~sGeD~AiwLLVST~Sd 1167 (1329)
...+. .++|++ .+...+ .+.+++..+...+..... .......|+| | +.+|+.++..+
T Consensus 321 ~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~~----~~~~~p~~sp----d-g~~l~~~~~~~ 386 (417)
T TIGR02800 321 GGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTDT----GLDESPSFAP----N-GRMILYATTRG 386 (417)
T ss_pred CCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEccCC----CCCCCceECC----C-CCEEEEEEeCC
Confidence 33333 388988 222222 355556555443321111 1223467898 6 66777666544
No 221
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=98.01 E-value=1.1e-05 Score=94.82 Aligned_cols=137 Identities=22% Similarity=0.279 Sum_probs=105.5
Q ss_pred ccCcceEEEeeeeecCCCCcccceeEEEecCCCCCeeEecCCCccEEEEEccccceeeeec-cCccceeEeccccccccc
Q 000725 1039 MNSSWSAQVEECIIPINDCIYPCIVEMKRIPKCAPLVVGHNGFGEFGIWDISKRVLVSRFS-AARASIYQFFPINLFSWQ 1117 (1329)
Q Consensus 1039 M~SgWsm~tee~Vi~~n~~v~p~I~elKrFpkss~lIVTgSGDgtf~LWDIskg~llqsF~-ahs~sV~sfsP~~s~S~d 1117 (1329)
.++.|+.+..- -----||..|+.+| ..+.++.++++||-|-.+-|||...++++.+++ +|..-||
T Consensus 32 ~~s~~lrrL~l--E~eL~GH~GCVN~L-eWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIF----------- 97 (758)
T KOG1310|consen 32 GNSTWLRRLDL--EAELTGHTGCVNCL-EWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIF----------- 97 (758)
T ss_pred cccHHHhhcch--hhhhccccceecce-eecCCCCEEeecCCcceEEeecchhcceeeeeeccccccee-----------
Confidence 56777655321 01223899999999 999999999999999999999999988876654 3433332
Q ss_pred cCcceEECcchhhhccccccccccCCCceeecCCCCccceEEEEeeccCccchhhcccccccCCCCcceeEEEeeeccce
Q 000725 1118 RNGSVSMDASLELTNTATTSLFSKHSEKSSFCPSVGEDSAIWLLVSTISDSDAQHNCMSRDCQKNPVRFWRLALLVKNRV 1197 (1329)
Q Consensus 1118 ~~v~tfd~~s~d~~leatv~~fSgdvn~VsF~P~sGeD~AiwLLVST~Sdd~t~~Dlra~~~~gH~n~~wRLALl~K~si 1197 (1329)
. ++|.| -
T Consensus 98 -----------------------s----vKFvP----~------------------------------------------ 104 (758)
T KOG1310|consen 98 -----------------------S----VKFVP----Y------------------------------------------ 104 (758)
T ss_pred -----------------------E----Eeeec----c------------------------------------------
Confidence 2 77888 1
Q ss_pred ecCCCCCCCceeeecCCCeEEeecCCCeEEEEEccc----------cceeeeeecccCceEEEEEecCCCCceEEEecCC
Q 000725 1198 ILGSPLDPRASAIGASSGLGIIGTNDGLVYAWELSS----------GNKLGILHHFKGGTVSCIATDDSGLQALAVAGDG 1267 (1329)
Q Consensus 1198 I~Gs~ldpra~afs~SG~~gfaGT~DGlVYmWDLst----------G~kL~tL~~Heg~rVSCVA~dps~p~~~AsA~d~ 1267 (1329)
++.+++++|.-|..||+.||.. -..+..+.||.+ ||--||+.|..|.++-+|+
T Consensus 105 --------------tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~-rVKria~~p~~Phtfwsas-- 167 (758)
T KOG1310|consen 105 --------------TNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTD-RVKRIATAPNGPHTFWSAS-- 167 (758)
T ss_pred --------------CCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhh-hhhheecCCCCCceEEEec--
Confidence 1234667888888999998884 334556689999 9999999999999999994
Q ss_pred CCCCccccCCCC
Q 000725 1268 PDGGRRQRDPRH 1279 (1329)
Q Consensus 1268 ~d~~~r~~~~~~ 1279 (1329)
-|||+||+|.|-
T Consensus 168 EDGtirQyDiRE 179 (758)
T KOG1310|consen 168 EDGTIRQYDIRE 179 (758)
T ss_pred CCcceeeecccC
Confidence 589999998775
No 222
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=98.00 E-value=0.00018 Score=86.06 Aligned_cols=228 Identities=13% Similarity=0.115 Sum_probs=138.3
Q ss_pred ccCCCCcEEEEEecCcce---eeeEEEecccc--eeEEEEe-cCCe--EEEecCCCeEEEEeccCcceEEEeeeee----
Q 000725 985 HRLDENAVKIVKVKPGYV---SVVAKLKTDDC--VQCILVC-EPKH--LIAVGESGKLHLWEMNSSWSAQVEECII---- 1052 (1329)
Q Consensus 985 s~seDNtVKIv~V~~G~v---sll~kL~~h~s--V~cIlVc-Dpnh--LVSaSdDGkL~IWDM~SgWsm~tee~Vi---- 1052 (1329)
.|..++.|=+|++..|.. +.+..+.+... |..|.|. ++.. ++|+|.||+|..|++.= -.++.+....
T Consensus 260 gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~-l~~P~e~~~~~~~~ 338 (555)
T KOG1587|consen 260 GGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDM-LSLPVEGLLLESKK 338 (555)
T ss_pred eeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccc-cccchhhccccccc
Confidence 677899999999988875 33333333344 4444444 6666 99999999999997321 1111111111
Q ss_pred --cCCCCcccceeEEEecCCCCCeeEecCCCccEEE---EEccccc----e-eeeeccCccceeE--ecccc----cccc
Q 000725 1053 --PINDCIYPCIVEMKRIPKCAPLVVGHNGFGEFGI---WDISKRV----L-VSRFSAARASIYQ--FFPIN----LFSW 1116 (1329)
Q Consensus 1053 --~~n~~v~p~I~elKrFpkss~lIVTgSGDgtf~L---WDIskg~----l-lqsF~ahs~sV~s--fsP~~----s~S~ 1116 (1329)
....+-...+..+|--+......|-|..+|.+-- |+.+.+- . +..|-.|-+.|+. ++|=+ +.+-
T Consensus 339 ~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g 418 (555)
T KOG1587|consen 339 HKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG 418 (555)
T ss_pred ccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeec
Confidence 1111233344444334445566777888887644 7777765 3 6688899999998 44433 4444
Q ss_pred ccCcceEECcchhhhc---cccccccccCCCceeecCCCCccceEEEEeeccCccchhhcccccccCCCCcceeEEEeee
Q 000725 1117 QRNGSVSMDASLELTN---TATTSLFSKHSEKSSFCPSVGEDSAIWLLVSTISDSDAQHNCMSRDCQKNPVRFWRLALLV 1193 (1329)
Q Consensus 1117 d~~v~tfd~~s~d~~l---eatv~~fSgdvn~VsF~P~sGeD~AiwLLVST~Sdd~t~~Dlra~~~~gH~n~~wRLALl~ 1193 (1329)
|-++++|+......-+ ....-.+.. ++.+|- = -..+++..++..+.+||+..++.. |...
T Consensus 419 DW~vriWs~~~~~~Pl~~~~~~~~~v~~----vaWSpt---r-pavF~~~d~~G~l~iWDLl~~~~~--Pv~s------- 481 (555)
T KOG1587|consen 419 DWTVRIWSEDVIASPLLSLDSSPDYVTD----VAWSPT---R-PAVFATVDGDGNLDIWDLLQDDEE--PVLS------- 481 (555)
T ss_pred cceeEeccccCCCCcchhhhhccceeee----eEEcCc---C-ceEEEEEcCCCceehhhhhccccC--Cccc-------
Confidence 8889999987533321 111111333 778871 1 234555566777778999965511 1111
Q ss_pred ccceecCCCCCCCceeeecCCCeEEeecCCCeEEEEEcccc
Q 000725 1194 KNRVILGSPLDPRASAIGASSGLGIIGTNDGLVYAWELSSG 1234 (1329)
Q Consensus 1194 K~siI~Gs~ldpra~afs~SG~~gfaGT~DGlVYmWDLstG 1234 (1329)
++++.+.= +-+.++.+|+.+++|..-|.|+||+|+..
T Consensus 482 ---~~~~~~~l-~~~~~s~~g~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 482 ---QKVCSPAL-TRVRWSPNGKLLAVGDANGTTHILKLSES 518 (555)
T ss_pred ---cccccccc-ceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence 12221111 22567888999999999999999999754
No 223
>PRK05137 tolB translocation protein TolB; Provisional
Probab=97.99 E-value=0.0003 Score=79.80 Aligned_cols=195 Identities=10% Similarity=-0.017 Sum_probs=110.8
Q ss_pred CeEEEEeccCcceEEEeeeeecCCCCcccceeEEEecCCCCCeeEecC---CCccEEEEEccccceeeeeccCccceeE-
Q 000725 1032 GKLHLWEMNSSWSAQVEECIIPINDCIYPCIVEMKRIPKCAPLVVGHN---GFGEFGIWDISKRVLVSRFSAARASIYQ- 1107 (1329)
Q Consensus 1032 GkL~IWDM~SgWsm~tee~Vi~~n~~v~p~I~elKrFpkss~lIVTgS---GDgtf~LWDIskg~llqsF~ahs~sV~s- 1107 (1329)
.+|.+||...+...+ .. .+...++.. +|.++++.|+-.+ ++..+.+||+.+|+..+ +..+...+..
T Consensus 182 ~~l~~~d~dg~~~~~-lt-------~~~~~v~~p-~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~-l~~~~g~~~~~ 251 (435)
T PRK05137 182 KRLAIMDQDGANVRY-LT-------DGSSLVLTP-RFSPNRQEITYMSYANGRPRVYLLDLETGQREL-VGNFPGMTFAP 251 (435)
T ss_pred eEEEEECCCCCCcEE-Ee-------cCCCCeEee-EECCCCCEEEEEEecCCCCEEEEEECCCCcEEE-eecCCCcccCc
Confidence 378899986544332 22 233456777 8889999888754 56899999999987632 3333334434
Q ss_pred -ecccc---cc--ccccCcceE--ECcchhhhccccccccccCCCceeecCCCCccceEEEEeeccC-c--cchhhcccc
Q 000725 1108 -FFPIN---LF--SWQRNGSVS--MDASLELTNTATTSLFSKHSEKSSFCPSVGEDSAIWLLVSTIS-D--SDAQHNCMS 1176 (1329)
Q Consensus 1108 -fsP~~---s~--S~d~~v~tf--d~~s~d~~leatv~~fSgdvn~VsF~P~sGeD~AiwLLVST~S-d--d~t~~Dlra 1176 (1329)
|+|++ .+ +.++...+| +..+++.++.... .+......|+| | +.+|+..+.. . ..+.+|+.
T Consensus 252 ~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~---~~~~~~~~~sp----D-G~~i~f~s~~~g~~~Iy~~d~~- 322 (435)
T PRK05137 252 RFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTRLTDS---PAIDTSPSYSP----D-GSQIVFESDRSGSPQLYVMNAD- 322 (435)
T ss_pred EECCCCCEEEEEEecCCCceEEEEECCCCceEEccCC---CCccCceeEcC----C-CCEEEEEECCCCCCeEEEEECC-
Confidence 99999 22 334443444 6656555432111 11222378999 6 6666655432 1 12223322
Q ss_pred cccCCCCcceeEEEeeeccceecCCCCCCCceeeecCCCeEEeecC---CCeEEEEEccccceeeeeecccCceEEEEEe
Q 000725 1177 RDCQKNPVRFWRLALLVKNRVILGSPLDPRASAIGASSGLGIIGTN---DGLVYAWELSSGNKLGILHHFKGGTVSCIAT 1253 (1329)
Q Consensus 1177 ~~~~gH~n~~wRLALl~K~siI~Gs~ldpra~afs~SG~~gfaGT~---DGlVYmWDLstG~kL~tL~~Heg~rVSCVA~ 1253 (1329)
.....+|. ++. -.-...+++++|++++..+. +..|++||+.++........ . .+...+.
T Consensus 323 ------g~~~~~lt--------~~~-~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~~lt~~--~-~~~~p~~ 384 (435)
T PRK05137 323 ------GSNPRRIS--------FGG-GRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGERILTSG--F-LVEGPTW 384 (435)
T ss_pred ------CCCeEEee--------cCC-CcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceEeccCC--C-CCCCCeE
Confidence 12222332 111 11133578999999876543 35899999866554322222 2 3667888
Q ss_pred cCCCCceEEEe
Q 000725 1254 DDSGLQALAVA 1264 (1329)
Q Consensus 1254 dps~p~~~AsA 1264 (1329)
+|.+.. ++.+
T Consensus 385 spDG~~-i~~~ 394 (435)
T PRK05137 385 APNGRV-IMFF 394 (435)
T ss_pred CCCCCE-EEEE
Confidence 987766 5554
No 224
>PRK02889 tolB translocation protein TolB; Provisional
Probab=97.98 E-value=0.00028 Score=80.24 Aligned_cols=225 Identities=10% Similarity=0.044 Sum_probs=130.4
Q ss_pred CCcEEEEEecCcceeeeEEEecc-cceeEEEEe-cCCeEEEecCC---CeEEEEeccCcceEEEeeeeecCCCCccccee
Q 000725 989 ENAVKIVKVKPGYVSVVAKLKTD-DCVQCILVC-EPKHLIAVGES---GKLHLWEMNSSWSAQVEECIIPINDCIYPCIV 1063 (1329)
Q Consensus 989 DNtVKIv~V~~G~vsll~kL~~h-~sV~cIlVc-DpnhLVSaSdD---GkL~IWDM~SgWsm~tee~Vi~~n~~v~p~I~ 1063 (1329)
...|-+|+..... ...+.++ ..+.+..|+ |.++|+.++.+ ..|.+||+.++-..+... .++ .+.
T Consensus 175 ~~~L~~~D~dG~~---~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~-----~~g---~~~ 243 (427)
T PRK02889 175 RYQLQISDADGQN---AQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVAN-----FKG---SNS 243 (427)
T ss_pred ccEEEEECCCCCC---ceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeec-----CCC---Ccc
Confidence 3457777774433 3445566 778899999 99999887743 459999999885433221 111 122
Q ss_pred EEEecCCCCCeeE-ecCCCccEEEEEcc--ccceeeeeccCcccee--Eecccc---cccc--ccCcceEECc--chhhh
Q 000725 1064 EMKRIPKCAPLVV-GHNGFGEFGIWDIS--KRVLVSRFSAARASIY--QFFPIN---LFSW--QRNGSVSMDA--SLELT 1131 (1329)
Q Consensus 1064 elKrFpkss~lIV-TgSGDgtf~LWDIs--kg~llqsF~ahs~sV~--sfsP~~---s~S~--d~~v~tfd~~--s~d~~ 1131 (1329)
.. +|.+++..|+ +.+.+|...||.+. .+. +..+..|...+. +|+|++ .+.- .+...+|... ++..+
T Consensus 244 ~~-~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~ 321 (427)
T PRK02889 244 AP-AWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQ 321 (427)
T ss_pred ce-EECCCCCEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceE
Confidence 44 7888887665 78888988888763 444 455555544333 399998 2221 2344555542 22221
Q ss_pred ccccccccccC-CCceeecCCCCccceEEEEeeccCcc---chhhcccccccCCCCcceeEEEeeeccceecCCCCCCCc
Q 000725 1132 NTATTSLFSKH-SEKSSFCPSVGEDSAIWLLVSTISDS---DAQHNCMSRDCQKNPVRFWRLALLVKNRVILGSPLDPRA 1207 (1329)
Q Consensus 1132 leatv~~fSgd-vn~VsF~P~sGeD~AiwLLVST~Sdd---~t~~Dlra~~~~gH~n~~wRLALl~K~siI~Gs~ldpra 1207 (1329)
+. .+.+. .....|+| | +.||+..+.... ...||+...+ ...++.. ..+ ..
T Consensus 322 ~l----t~~g~~~~~~~~Sp----D-G~~Ia~~s~~~g~~~I~v~d~~~g~----------~~~lt~~------~~~-~~ 375 (427)
T PRK02889 322 RV----TFTGSYNTSPRISP----D-GKLLAYISRVGGAFKLYVQDLATGQ----------VTALTDT------TRD-ES 375 (427)
T ss_pred EE----ecCCCCcCceEECC----C-CCEEEEEEccCCcEEEEEEECCCCC----------eEEccCC------CCc-cC
Confidence 11 12221 22477999 6 778776554432 3345554321 1111111 122 45
Q ss_pred eeeecCCCeEEeecCCC---eEEEEEccccceeeeeecccCceEEEEEec
Q 000725 1208 SAIGASSGLGIIGTNDG---LVYAWELSSGNKLGILHHFKGGTVSCIATD 1254 (1329)
Q Consensus 1208 ~afs~SG~~gfaGT~DG---lVYmWDLstG~kL~tL~~Heg~rVSCVA~d 1254 (1329)
..++++|++++..++++ .+|+=++ +|+....+..+.+ .|+..+.+
T Consensus 376 p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~g-~~~~p~ws 423 (427)
T PRK02889 376 PSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRLSVQGG-DVREPSWG 423 (427)
T ss_pred ceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEeecCCC-CCCCCccC
Confidence 68999999998888766 3555555 5666666666666 45444444
No 225
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=97.96 E-value=0.00084 Score=73.97 Aligned_cols=217 Identities=10% Similarity=0.052 Sum_probs=121.2
Q ss_pred CCcEEEEEecCcceeeeEEEecc-cceeEEEEe-cCCeEEEecCC---CeEEEEeccCcceEEEeeeeecCCCCccccee
Q 000725 989 ENAVKIVKVKPGYVSVVAKLKTD-DCVQCILVC-EPKHLIAVGES---GKLHLWEMNSSWSAQVEECIIPINDCIYPCIV 1063 (1329)
Q Consensus 989 DNtVKIv~V~~G~vsll~kL~~h-~sV~cIlVc-DpnhLVSaSdD---GkL~IWDM~SgWsm~tee~Vi~~n~~v~p~I~ 1063 (1329)
...|-+++...+. .+.|..+ ..+....|+ |.++|+.++.+ .+|++||+.++-...... . . ....
T Consensus 169 ~~~l~~~d~~g~~---~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~----~-~---~~~~ 237 (417)
T TIGR02800 169 RYELQVADYDGAN---PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVAS----F-P---GMNG 237 (417)
T ss_pred cceEEEEcCCCCC---CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeec----C-C---CCcc
Confidence 4567777776554 3445555 458888898 99999877644 489999999875433222 1 1 1122
Q ss_pred EEEecCCCCCee-EecCC--CccEEEEEccccceeeeeccCcccee--Eeccccc---ccc--ccCcceE--ECcchhhh
Q 000725 1064 EMKRIPKCAPLV-VGHNG--FGEFGIWDISKRVLVSRFSAARASIY--QFFPINL---FSW--QRNGSVS--MDASLELT 1131 (1329)
Q Consensus 1064 elKrFpkss~lI-VTgSG--Dgtf~LWDIskg~llqsF~ahs~sV~--sfsP~~s---~S~--d~~v~tf--d~~s~d~~ 1131 (1329)
.. +|.+++..| ++.+. ...+-+||+.+++..+-.. +...+. .|+|++. +.- .+...+| +..+++..
T Consensus 238 ~~-~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~-~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~ 315 (417)
T TIGR02800 238 AP-AFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRLTN-GPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR 315 (417)
T ss_pred ce-EECCCCCEEEEEECCCCCccEEEEECCCCCEEECCC-CCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE
Confidence 34 677877755 45544 4568899999887644433 333332 3888871 221 2222333 33333222
Q ss_pred cccccccccc-CCCceeecCCCCccceEEEEeeccCc---cchhhcccccccCCCCcceeEEEeeeccceecCCCCCCCc
Q 000725 1132 NTATTSLFSK-HSEKSSFCPSVGEDSAIWLLVSTISD---SDAQHNCMSRDCQKNPVRFWRLALLVKNRVILGSPLDPRA 1207 (1329)
Q Consensus 1132 leatv~~fSg-dvn~VsF~P~sGeD~AiwLLVST~Sd---d~t~~Dlra~~~~gH~n~~wRLALl~K~siI~Gs~ldpra 1207 (1329)
+. .+.+ ......|+| | +.+|++++... ....+|+... .++ .+... + ....
T Consensus 316 ~l----~~~~~~~~~~~~sp----d-g~~i~~~~~~~~~~~i~~~d~~~~--------~~~--~l~~~----~---~~~~ 369 (417)
T TIGR02800 316 RL----TFRGGYNASPSWSP----D-GDLIAFVHREGGGFNIAVMDLDGG--------GER--VLTDT----G---LDES 369 (417)
T ss_pred Ee----ecCCCCccCeEECC----C-CCEEEEEEccCCceEEEEEeCCCC--------CeE--EccCC----C---CCCC
Confidence 11 0111 223478888 6 67777776654 3333554321 122 11111 1 1233
Q ss_pred eeeecCCCeEEeecCCC---eEEEEEccccceeeeeecccC
Q 000725 1208 SAIGASSGLGIIGTNDG---LVYAWELSSGNKLGILHHFKG 1245 (1329)
Q Consensus 1208 ~afs~SG~~gfaGT~DG---lVYmWDLstG~kL~tL~~Heg 1245 (1329)
.++++.|++++..+.++ .+|+.+ .+|+....+..+.+
T Consensus 370 p~~spdg~~l~~~~~~~~~~~l~~~~-~~g~~~~~~~~~~g 409 (417)
T TIGR02800 370 PSFAPNGRMILYATTRGGRGVLGLVS-TDGRFRARLPLGNG 409 (417)
T ss_pred ceECCCCCEEEEEEeCCCcEEEEEEE-CCCceeeECCCCCC
Confidence 47999999999888875 456555 34555555554433
No 226
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=97.95 E-value=0.0091 Score=66.29 Aligned_cols=280 Identities=15% Similarity=0.214 Sum_probs=163.4
Q ss_pred CCCCcEEEEEe--cCcceeeeEEEecccceeEEEEe-cCCeEEEecC----CCeEEEEeccCc--ceEEEeeeeecCCCC
Q 000725 987 LDENAVKIVKV--KPGYVSVVAKLKTDDCVQCILVC-EPKHLIAVGE----SGKLHLWEMNSS--WSAQVEECIIPINDC 1057 (1329)
Q Consensus 987 seDNtVKIv~V--~~G~vsll~kL~~h~sV~cIlVc-DpnhLVSaSd----DGkL~IWDM~Sg--Wsm~tee~Vi~~n~~ 1057 (1329)
.+.+.|.++++ ++|..+++..+..-..-+.+.+. +.++|.++.+ +|.|..|++... -........+ .+
T Consensus 10 ~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~---~g 86 (345)
T PF10282_consen 10 GKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPS---GG 86 (345)
T ss_dssp SSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEE---SS
T ss_pred CCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeecc---CC
Confidence 45689999998 88998888887777888999998 9999999877 579999997763 3333333111 34
Q ss_pred cccceeEEEecCCCCCeeEecC-CCccEEEEEccc-cceee---ee--ccC--------ccceeE--eccccc--cc---
Q 000725 1058 IYPCIVEMKRIPKCAPLVVGHN-GFGEFGIWDISK-RVLVS---RF--SAA--------RASIYQ--FFPINL--FS--- 1115 (1329)
Q Consensus 1058 v~p~I~elKrFpkss~lIVTgS-GDgtf~LWDIsk-g~llq---sF--~ah--------s~sV~s--fsP~~s--~S--- 1115 (1329)
..||-+.+ .+++..|+..+ ++|++.+++|.. |.+.. .+ .++ +.-..+ |.|++- +.
T Consensus 87 ~~p~~i~~---~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dl 163 (345)
T PF10282_consen 87 SSPCHIAV---DPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDL 163 (345)
T ss_dssp SCEEEEEE---CTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEET
T ss_pred CCcEEEEE---ecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEec
Confidence 56665544 66677666666 599999999988 55522 22 111 122233 888872 11
Q ss_pred cccCcceEECcchhhhcc----ccccccccCCCceeecCCCCccceEE-EEeeccCccchhhcccccccCCCCcceeEEE
Q 000725 1116 WQRNGSVSMDASLELTNT----ATTSLFSKHSEKSSFCPSVGEDSAIW-LLVSTISDSDAQHNCMSRDCQKNPVRFWRLA 1190 (1329)
Q Consensus 1116 ~d~~v~tfd~~s~d~~le----atv~~fSgdvn~VsF~P~sGeD~Aiw-LLVST~Sdd~t~~Dlra~~~~gH~n~~wRLA 1190 (1329)
-...|.+|+.......+. .....-++ -.-+.|+| | +.+ +++.-.+.....|++.... +.--...++.
T Consensus 164 G~D~v~~~~~~~~~~~l~~~~~~~~~~G~G-PRh~~f~p----d-g~~~Yv~~e~s~~v~v~~~~~~~--g~~~~~~~~~ 235 (345)
T PF10282_consen 164 GADRVYVYDIDDDTGKLTPVDSIKVPPGSG-PRHLAFSP----D-GKYAYVVNELSNTVSVFDYDPSD--GSLTEIQTIS 235 (345)
T ss_dssp TTTEEEEEEE-TTS-TEEEEEEEECSTTSS-EEEEEE-T----T-SSEEEEEETTTTEEEEEEEETTT--TEEEEEEEEE
T ss_pred CCCEEEEEEEeCCCceEEEeeccccccCCC-CcEEEEcC----C-cCEEEEecCCCCcEEEEeecccC--CceeEEEEee
Confidence 123455555544442220 01111111 12288999 6 444 4556778888888777332 1111111222
Q ss_pred eeeccceecCCCCCCCceeeecCCCeEEeec-CCCeEEEEEc-cccceeeeeecc--cCceEEEEEecCCCCceEEEecC
Q 000725 1191 LLVKNRVILGSPLDPRASAIGASSGLGIIGT-NDGLVYAWEL-SSGNKLGILHHF--KGGTVSCIATDDSGLQALAVAGD 1266 (1329)
Q Consensus 1191 Ll~K~siI~Gs~ldpra~afs~SG~~gfaGT-~DGlVYmWDL-stG~kL~tL~~H--eg~rVSCVA~dps~p~~~AsA~d 1266 (1329)
.+-.. .-|. -.|...+++++|++++... .++.|-++++ ....+|..+... .|..-..++++|++.- +++|.
T Consensus 236 ~~~~~--~~~~-~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~-l~Va~- 310 (345)
T PF10282_consen 236 TLPEG--FTGE-NAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRY-LYVAN- 310 (345)
T ss_dssp SCETT--SCSS-SSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSE-EEEEE-
T ss_pred ecccc--cccc-CCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCE-EEEEe-
Confidence 21110 1111 1466788999999988865 5678999999 332333333211 2223667888887776 55562
Q ss_pred CCCCCccccCCCCCCCCcEEEeeeCCCcceee
Q 000725 1267 GPDGGRRQRDPRHGQNDHVRIWKMDPNLGCVR 1298 (1329)
Q Consensus 1267 ~~d~~~r~~~~~~s~D~~VRiW~~~~~~~~~~ 1298 (1329)
..++.|.+|+.++.-|-..
T Consensus 311 -------------~~s~~v~vf~~d~~tG~l~ 329 (345)
T PF10282_consen 311 -------------QDSNTVSVFDIDPDTGKLT 329 (345)
T ss_dssp -------------TTTTEEEEEEEETTTTEEE
T ss_pred -------------cCCCeEEEEEEeCCCCcEE
Confidence 4668899999998777543
No 227
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=97.95 E-value=0.00019 Score=84.87 Aligned_cols=47 Identities=21% Similarity=0.254 Sum_probs=45.8
Q ss_pred eeeecCCCeEEeecCCCeEEEEEccccceeeeeecccCceEEEEEecC
Q 000725 1208 SAIGASSGLGIIGTNDGLVYAWELSSGNKLGILHHFKGGTVSCIATDD 1255 (1329)
Q Consensus 1208 ~afs~SG~~gfaGT~DGlVYmWDLstG~kL~tL~~Heg~rVSCVA~dp 1255 (1329)
+|-||+|+|+++|.+|-+|-+|-+-.++.+++=|+|+. +|+-||+||
T Consensus 338 vcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkS-WVs~VaFDp 384 (636)
T KOG2394|consen 338 VCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKS-WVSVVAFDP 384 (636)
T ss_pred EEEcCCccEEEecCCcceEEEEEeccceEEEecccccc-ceeeEeecc
Confidence 88999999999999999999999999999999999999 999999994
No 228
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=97.92 E-value=6.9e-05 Score=92.79 Aligned_cols=171 Identities=12% Similarity=0.062 Sum_probs=125.7
Q ss_pred cCCCCcEEEEEecCcceeeeEEEecccc--eeEEEEe----cCCeEEEecCCCeEEEEeccCcceEEEeeeeecC--CCC
Q 000725 986 RLDENAVKIVKVKPGYVSVVAKLKTDDC--VQCILVC----EPKHLIAVGESGKLHLWEMNSSWSAQVEECIIPI--NDC 1057 (1329)
Q Consensus 986 ~seDNtVKIv~V~~G~vsll~kL~~h~s--V~cIlVc----DpnhLVSaSdDGkL~IWDM~SgWsm~tee~Vi~~--n~~ 1057 (1329)
..-+|.|-||+++.|. ++.+....+. .-+.+++ ++-|+++++--+.|++|+.. ....+ -.+
T Consensus 105 ~~~~ns~~i~d~~~~~--~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~---------~dn~p~~l~G 173 (967)
T KOG0974|consen 105 VTSRNSLLIRDSKNSS--VLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPH---------EDNKPIRLKG 173 (967)
T ss_pred EEcCceEEEEecccCc--eehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEecc---------ccCCcceecc
Confidence 3457899999999988 7777766621 2222222 88999999999999999976 12222 247
Q ss_pred cccceeEEEecCCCCCeeEecCCCccEEEEEccccceee-eeccCccceeE--ecccccc--ccccCcceEECcchhhhc
Q 000725 1058 IYPCIVEMKRIPKCAPLVVGHNGFGEFGIWDISKRVLVS-RFSAARASIYQ--FFPINLF--SWQRNGSVSMDASLELTN 1132 (1329)
Q Consensus 1058 v~p~I~elKrFpkss~lIVTgSGDgtf~LWDIskg~llq-sF~ahs~sV~s--fsP~~s~--S~d~~v~tfd~~s~d~~l 1132 (1329)
|-..|+.+ .+..++++|++.|-|-++|||+|+++.-+. +-=+|++-|++ |.|...- +-|=++++|....-. +
T Consensus 174 HeG~iF~i-~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n~i~t~gedctcrvW~~~~~~--l 250 (967)
T KOG0974|consen 174 HEGSIFSI-VTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPNRIITVGEDCTCRVWGVNGTQ--L 250 (967)
T ss_pred cCCceEEE-EEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccceeEEeccceEEEEEecccce--e
Confidence 88999999 888899999999999999999999999877 78899999999 9999844 444556778322222 2
Q ss_pred cccccccccCCCceeecCCCCccceEEEEeeccCccchhhccc
Q 000725 1133 TATTSLFSKHSEKSSFCPSVGEDSAIWLLVSTISDSDAQHNCM 1175 (1329)
Q Consensus 1133 eatv~~fSgdvn~VsF~P~sGeD~AiwLLVST~Sdd~t~~Dlr 1175 (1329)
+.-...+-+++-.+...+ + ++|+..+..+..++.||+-
T Consensus 251 ~~y~~h~g~~iw~~~~~~----~-~~~~vT~g~Ds~lk~~~l~ 288 (967)
T KOG0974|consen 251 EVYDEHSGKGIWKIAVPI----G-VIIKVTGGNDSTLKLWDLN 288 (967)
T ss_pred hhhhhhhhcceeEEEEcC----C-ceEEEeeccCcchhhhhhh
Confidence 211111222455576776 6 7888888888888888887
No 229
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=97.91 E-value=0.0025 Score=81.21 Aligned_cols=263 Identities=13% Similarity=0.109 Sum_probs=146.8
Q ss_pred ceeeecCC-CcEEEEecCccCccccCCCccccccccccccCCCCcEEEEEecCcceeeeEEEecc---------------
Q 000725 948 SCALFTPD-GQYLVLLDSMKTPYCREGRSDCLCSTCTSHRLDENAVKIVKVKPGYVSVVAKLKTD--------------- 1011 (1329)
Q Consensus 948 sglqFTPD-GQ~LvLlgsik~p~CR~~~~dC~Cs~C~~s~seDNtVKIv~V~~G~vsll~kL~~h--------------- 1011 (1329)
.|+.+.++ |+..| +-+..+.|++|+....+ +.++-+.
T Consensus 571 ~gvavd~~~g~lyV------------------------aDs~n~rI~v~d~~G~~---i~~ig~~g~~G~~dG~~~~a~f 623 (1057)
T PLN02919 571 GKLAIDLLNNRLFI------------------------SDSNHNRIVVTDLDGNF---IVQIGSTGEEGLRDGSFEDATF 623 (1057)
T ss_pred ceEEEECCCCeEEE------------------------EECCCCeEEEEeCCCCE---EEEEccCCCcCCCCCchhcccc
Confidence 46889875 55666 45567889999876433 3333321
Q ss_pred cceeEEEEe-cCCe-EEEecCCCeEEEEeccCcceEEEee---eeecCCCC------cccceeEEEecCC-CCCeeEecC
Q 000725 1012 DCVQCILVC-EPKH-LIAVGESGKLHLWEMNSSWSAQVEE---CIIPINDC------IYPCIVEMKRIPK-CAPLVVGHN 1079 (1329)
Q Consensus 1012 ~sV~cIlVc-Dpnh-LVSaSdDGkL~IWDM~SgWsm~tee---~Vi~~n~~------v~p~I~elKrFpk-ss~lIVTgS 1079 (1329)
..-+.|+|. +.+. .|+-...++|+++|..++-+....- ......++ ....-..+ .|.+ .+.+.|+.+
T Consensus 624 ~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gV-a~dp~~g~LyVad~ 702 (1057)
T PLN02919 624 NRPQGLAYNAKKNLLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDV-CFEPVNEKVYIAMA 702 (1057)
T ss_pred CCCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEE-EEecCCCeEEEEEC
Confidence 235889998 6664 4666677899999987754322211 00000001 01112345 6666 678899999
Q ss_pred CCccEEEEEccccceeeeeccCccceeEeccccccccccCcceEECcchhhhccccccccccCCCceeecCCCCccceEE
Q 000725 1080 GFGEFGIWDISKRVLVSRFSAARASIYQFFPINLFSWQRNGSVSMDASLELTNTATTSLFSKHSEKSSFCPSVGEDSAIW 1159 (1329)
Q Consensus 1080 GDgtf~LWDIskg~llqsF~ahs~sV~sfsP~~s~S~d~~v~tfd~~s~d~~leatv~~fSgdvn~VsF~P~sGeD~Aiw 1159 (1329)
++..+.+||...|.. .+|.+.+... ..++. . .....|. .-..+.|.| | +.+
T Consensus 703 ~~~~I~v~d~~~g~v-~~~~G~G~~~---------~~~g~--~-----------~~~~~~~-~P~GIavsp----d-G~~ 753 (1057)
T PLN02919 703 GQHQIWEYNISDGVT-RVFSGDGYER---------NLNGS--S-----------GTSTSFA-QPSGISLSP----D-LKE 753 (1057)
T ss_pred CCCeEEEEECCCCeE-EEEecCCccc---------cCCCC--c-----------ccccccc-CccEEEEeC----C-CCE
Confidence 999999999988754 3443322110 00000 0 0000010 122378888 5 555
Q ss_pred EEee-ccCccchhhcccccccCCCCcceeEEEe----eeccceecCC---------CCCCCceeeecCCCeEEeecCCCe
Q 000725 1160 LLVS-TISDSDAQHNCMSRDCQKNPVRFWRLAL----LVKNRVILGS---------PLDPRASAIGASSGLGIIGTNDGL 1225 (1329)
Q Consensus 1160 LLVS-T~Sdd~t~~Dlra~~~~gH~n~~wRLAL----l~K~siI~Gs---------~ldpra~afs~SG~~gfaGT~DGl 1225 (1329)
|+|+ +.+..++.||+.... ..-++. +..+..-||. --.|+.+++++.|.+.++-+.++.
T Consensus 754 LYVADs~n~~Irv~D~~tg~-------~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~r 826 (1057)
T PLN02919 754 LYIADSESSSIRALDLKTGG-------SRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHK 826 (1057)
T ss_pred EEEEECCCCeEEEEECCCCc-------EEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCE
Confidence 6554 344566667765322 000000 0001111111 124889999999999999999999
Q ss_pred EEEEEccccceeeee----ecccCc--------eEEEEEecCCCCceEEEecCCCCCCccccCC
Q 000725 1226 VYAWELSSGNKLGIL----HHFKGG--------TVSCIATDDSGLQALAVAGDGPDGGRRQRDP 1277 (1329)
Q Consensus 1226 VYmWDLstG~kL~tL----~~Heg~--------rVSCVA~dps~p~~~AsA~d~~d~~~r~~~~ 1277 (1329)
|.+||..+|...... .++.++ +...|++++.+. +-+| |.+++++|+|+.
T Consensus 827 IrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~--lyVa-Dt~Nn~Irvid~ 887 (1057)
T PLN02919 827 IKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGR--LFVA-DTNNSLIRYLDL 887 (1057)
T ss_pred EEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCC--EEEE-ECCCCEEEEEEC
Confidence 999999888665322 112211 466778886553 3333 455666666655
No 230
>PRK02889 tolB translocation protein TolB; Provisional
Probab=97.90 E-value=0.00064 Score=77.36 Aligned_cols=177 Identities=14% Similarity=0.066 Sum_probs=101.4
Q ss_pred ceeEEEecCCCCCeeEecCC---CccEEEEEcccccee--eeeccCccceeEecccc-----ccccccCcceEECc--ch
Q 000725 1061 CIVEMKRIPKCAPLVVGHNG---FGEFGIWDISKRVLV--SRFSAARASIYQFFPIN-----LFSWQRNGSVSMDA--SL 1128 (1329)
Q Consensus 1061 ~I~elKrFpkss~lIVTgSG---Dgtf~LWDIskg~ll--qsF~ahs~sV~sfsP~~-----s~S~d~~v~tfd~~--s~ 1128 (1329)
.++.. ++.+++..|+-.+. ...+.+||+.+|+.. ..+.++. ....|+|++ +.+-++..++|... +.
T Consensus 197 ~v~~p-~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~-~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~ 274 (427)
T PRK02889 197 PIISP-AWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSN-SAPAWSPDGRTLAVALSRDGNSQIYTVNADGS 274 (427)
T ss_pred Ccccc-eEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCc-cceEECCCCCEEEEEEccCCCceEEEEECCCC
Confidence 35566 88888888876554 345999999999763 3344332 123499998 23456666777653 33
Q ss_pred hhhccccccccccCCCceeecCCCCccceEEEEeec-cCccchhhcccccccCCCCcceeEEEeeeccceecCCCCCCCc
Q 000725 1129 ELTNTATTSLFSKHSEKSSFCPSVGEDSAIWLLVST-ISDSDAQHNCMSRDCQKNPVRFWRLALLVKNRVILGSPLDPRA 1207 (1329)
Q Consensus 1129 d~~leatv~~fSgdvn~VsF~P~sGeD~AiwLLVST-~Sdd~t~~Dlra~~~~gH~n~~wRLALl~K~siI~Gs~ldpra 1207 (1329)
..++. +.. .+......|+| | +.+|+..+ ......+|.+.++. .. .+ .+.++.. ....
T Consensus 275 ~~~~l-t~~--~~~~~~~~wSp----D-G~~l~f~s~~~g~~~Iy~~~~~~-----g~-~~-------~lt~~g~-~~~~ 332 (427)
T PRK02889 275 GLRRL-TQS--SGIDTEPFFSP----D-GRSIYFTSDRGGAPQIYRMPASG-----GA-AQ-------RVTFTGS-YNTS 332 (427)
T ss_pred CcEEC-CCC--CCCCcCeEEcC----C-CCEEEEEecCCCCcEEEEEECCC-----Cc-eE-------EEecCCC-CcCc
Confidence 32221 111 11223478999 7 77776543 22233344443221 01 11 1112111 1224
Q ss_pred eeeecCCCeEEeecCCC---eEEEEEccccceeeeeecccCceEEEEEecCCCCceEEEec
Q 000725 1208 SAIGASSGLGIIGTNDG---LVYAWELSSGNKLGILHHFKGGTVSCIATDDSGLQALAVAG 1265 (1329)
Q Consensus 1208 ~afs~SG~~gfaGT~DG---lVYmWDLstG~kL~tL~~Heg~rVSCVA~dps~p~~~AsA~ 1265 (1329)
.+++++|++++..+.++ .||+||+.+|+......+ . ....++.+|++.. ++.++
T Consensus 333 ~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~-~--~~~~p~~spdg~~-l~~~~ 389 (427)
T PRK02889 333 PRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTDT-T--RDESPSFAPNGRY-ILYAT 389 (427)
T ss_pred eEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccCC-C--CccCceECCCCCE-EEEEE
Confidence 67999999998766554 699999999875433332 2 2457789988877 55553
No 231
>PRK00178 tolB translocation protein TolB; Provisional
Probab=97.86 E-value=0.00034 Score=78.52 Aligned_cols=177 Identities=10% Similarity=0.064 Sum_probs=105.9
Q ss_pred ceeeecCCCcEEEEecCccCccccCCCccccccccccccCCCCcEEEEEecCcceeeeEEEecccceeEEEEe-cCCeEE
Q 000725 948 SCALFTPDGQYLVLLDSMKTPYCREGRSDCLCSTCTSHRLDENAVKIVKVKPGYVSVVAKLKTDDCVQCILVC-EPKHLI 1026 (1329)
Q Consensus 948 sglqFTPDGQ~LvLlgsik~p~CR~~~~dC~Cs~C~~s~seDNtVKIv~V~~G~vsll~kL~~h~sV~cIlVc-DpnhLV 1026 (1329)
...+|+|||++|+++.. ......|.+|++.+|....++.+.++ +....|+ |.++|+
T Consensus 202 ~~p~wSpDG~~la~~s~---------------------~~~~~~l~~~~l~~g~~~~l~~~~g~--~~~~~~SpDG~~la 258 (430)
T PRK00178 202 LSPRWSPDGKRIAYVSF---------------------EQKRPRIFVQNLDTGRREQITNFEGL--NGAPAWSPDGSKLA 258 (430)
T ss_pred eeeeECCCCCEEEEEEc---------------------CCCCCEEEEEECCCCCEEEccCCCCC--cCCeEECCCCCEEE
Confidence 56799999999995431 11234699999999986666555543 4467888 988886
Q ss_pred -EecCCC--eEEEEeccCcceEEEeeeeecCCCCcccceeEEEecCCCCCeeEe-cC--CCccEEEEEccccceee-eec
Q 000725 1027 -AVGESG--KLHLWEMNSSWSAQVEECIIPINDCIYPCIVEMKRIPKCAPLVVG-HN--GFGEFGIWDISKRVLVS-RFS 1099 (1329)
Q Consensus 1027 -SaSdDG--kL~IWDM~SgWsm~tee~Vi~~n~~v~p~I~elKrFpkss~lIVT-gS--GDgtf~LWDIskg~llq-sF~ 1099 (1329)
+.+.+| .|.+||+.++-..+.. .... ...+. .|.+++..|+- .+ +...+-+||+..|+..+ ++.
T Consensus 259 ~~~~~~g~~~Iy~~d~~~~~~~~lt-----~~~~---~~~~~-~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~ 329 (430)
T PRK00178 259 FVLSKDGNPEIYVMDLASRQLSRVT-----NHPA---IDTEP-FWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFV 329 (430)
T ss_pred EEEccCCCceEEEEECCCCCeEEcc-----cCCC---CcCCe-EECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecC
Confidence 666666 6888899887433211 1111 12233 67777776653 33 33467778888887533 344
Q ss_pred cCccceeEecccc---cccc--cc--CcceEECcchhhhccccccccccCCCceeecCCCCccceEEEEeecc
Q 000725 1100 AARASIYQFFPIN---LFSW--QR--NGSVSMDASLELTNTATTSLFSKHSEKSSFCPSVGEDSAIWLLVSTI 1165 (1329)
Q Consensus 1100 ahs~sV~sfsP~~---s~S~--d~--~v~tfd~~s~d~~leatv~~fSgdvn~VsF~P~sGeD~AiwLLVST~ 1165 (1329)
++......++|++ .+.. ++ .+.+++..+++.++.... .......|+| | +.||+.++.
T Consensus 330 ~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~~----~~~~~p~~sp----d-g~~i~~~~~ 393 (430)
T PRK00178 330 GNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTDT----SLDESPSVAP----N-GTMLIYATR 393 (430)
T ss_pred CCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEccCC----CCCCCceECC----C-CCEEEEEEe
Confidence 4434434589988 2221 22 244556665554432111 1123468998 7 778877665
No 232
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.85 E-value=0.0012 Score=66.81 Aligned_cols=194 Identities=11% Similarity=0.114 Sum_probs=112.9
Q ss_pred ccCCCCcEEEEEecCcceeeeEEEecccceeEEEEecCCeEEEecCCCeEEEEeccCcceEEEe-eeeecCCCCccccee
Q 000725 985 HRLDENAVKIVKVKPGYVSVVAKLKTDDCVQCILVCEPKHLIAVGESGKLHLWEMNSSWSAQVE-ECIIPINDCIYPCIV 1063 (1329)
Q Consensus 985 s~seDNtVKIv~V~~G~vsll~kL~~h~sV~cIlVcDpnhLVSaSdDGkL~IWDM~SgWsm~te-e~Vi~~n~~v~p~I~ 1063 (1329)
.++.++.|..|+.++|. ++-++..-..+....+.+...|+.+..|++|..+|+.+|-..-.. ....+...+..+...
T Consensus 41 ~~~~~~~l~~~d~~tG~--~~W~~~~~~~~~~~~~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~ 118 (238)
T PF13360_consen 41 VASGDGNLYALDAKTGK--VLWRFDLPGPISGAPVVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSP 118 (238)
T ss_dssp EEETTSEEEEEETTTSE--EEEEEECSSCGGSGEEEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEE
T ss_pred EEcCCCEEEEEECCCCC--EEEEeeccccccceeeecccccccccceeeeEecccCCcceeeeeccccccccccccccCc
Confidence 44689999999999999 665555443333323556666666667889999999999777663 322222233344444
Q ss_pred EEEecCCCCCeeEecCCCccEEEEEccccceeeeeccCccceeEeccccccccccCcceEECcchhhhccccccccccCC
Q 000725 1064 EMKRIPKCAPLVVGHNGFGEFGIWDISKRVLVSRFSAARASIYQFFPINLFSWQRNGSVSMDASLELTNTATTSLFSKHS 1143 (1329)
Q Consensus 1064 elKrFpkss~lIVTgSGDgtf~LWDIskg~llqsF~ahs~sV~sfsP~~s~S~d~~v~tfd~~s~d~~leatv~~fSgdv 1143 (1329)
.+ . +..++.+..++.+..+|+++|+.+-.+..+...... .+.......-.
T Consensus 119 ~~-~----~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~-------------~~~~~~~~~~~------------ 168 (238)
T PF13360_consen 119 AV-D----GDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSS-------------PISSFSDINGS------------ 168 (238)
T ss_dssp EE-E----TTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS---------------EEEETTEEEE------------
T ss_pred eE-e----cCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCc-------------ceeeecccccc------------
Confidence 44 1 566677777999999999999998888764333111 00000000000
Q ss_pred CceeecCCCCccceEEEEeeccCccchhhcccccccCCCCcceeEEEeeeccceecCCCCCCCceeeecCCCeEEeecCC
Q 000725 1144 EKSSFCPSVGEDSAIWLLVSTISDSDAQHNCMSRDCQKNPVRFWRLALLVKNRVILGSPLDPRASAIGASSGLGIIGTND 1223 (1329)
Q Consensus 1144 n~VsF~P~sGeD~AiwLLVST~Sdd~t~~Dlra~~~~gH~n~~wRLALl~K~siI~Gs~ldpra~afs~SG~~gfaGT~D 1223 (1329)
+.+. ++ -+++++.+....+.|+...+ ..|+.. ++. ........|+++++++.|
T Consensus 169 --~~~~----~~---~v~~~~~~g~~~~~d~~tg~------~~w~~~--------~~~----~~~~~~~~~~~l~~~~~~ 221 (238)
T PF13360_consen 169 --PVIS----DG---RVYVSSGDGRVVAVDLATGE------KLWSKP--------ISG----IYSLPSVDGGTLYVTSSD 221 (238)
T ss_dssp --EECC----TT---EEEEECCTSSEEEEETTTTE------EEEEEC--------SS-----ECECEECCCTEEEEEETT
T ss_pred --eEEE----CC---EEEEEcCCCeEEEEECCCCC------EEEEec--------CCC----ccCCceeeCCEEEEEeCC
Confidence 0000 11 23333333321222444332 235421 111 122367899999999999
Q ss_pred CeEEEEEcccccee
Q 000725 1224 GLVYAWELSSGNKL 1237 (1329)
Q Consensus 1224 GlVYmWDLstG~kL 1237 (1329)
+.|++||+.||+.+
T Consensus 222 ~~l~~~d~~tG~~~ 235 (238)
T PF13360_consen 222 GRLYALDLKTGKVV 235 (238)
T ss_dssp TEEEEEETTTTEEE
T ss_pred CEEEEEECCCCCEE
Confidence 99999999999875
No 233
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=97.84 E-value=6.1e-05 Score=88.99 Aligned_cols=219 Identities=14% Similarity=0.099 Sum_probs=162.5
Q ss_pred hhcccCcccee-eeecccccceeeeeeccCCeEEEEEEeccccccceEEEEEEee-------eCCCCCCCCceeeccccc
Q 000725 860 INELAGTFDLM-GCYFFPLPILSVLLSTTGDKIYVCVSCGFLVDKKRTLFIYTVD-------IQEPRVGNPSCVGHTSVM 931 (1329)
Q Consensus 860 ~n~l~~~~~l~-g~y~HpmpVlsv~l~t~~~ei~IcVlCG~L~~~~r~Lf~Yki~-------i~~~~~~~p~~vg~t~~l 931 (1329)
+++=++.+|.+ .=|-|--|||||.+.-.+..+| -...+-++-.+++. .-+|+...-++.|||=
T Consensus 327 ~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~y-------sgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtd-- 397 (577)
T KOG0642|consen 327 KKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCY-------SGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTD-- 397 (577)
T ss_pred CCccccceeeeEEEecccCceEEEEecCCceEEE-------eeccCceeeeeccCCCCCcccccCcchhccceecccc--
Confidence 44444555544 4467999999999988776643 12333333344332 2244455556666664
Q ss_pred ccccccccccccccccceeeecCCCcEEEEecCccCccccCCCccccccccccccCCCCcEEEEEecCcceeeeEEEecc
Q 000725 932 LPFLKDNFGREIALERSCALFTPDGQYLVLLDSMKTPYCREGRSDCLCSTCTSHRLDENAVKIVKVKPGYVSVVAKLKTD 1011 (1329)
Q Consensus 932 lp~~~~~~~~~~~~ersglqFTPDGQ~LvLlgsik~p~CR~~~~dC~Cs~C~~s~seDNtVKIv~V~~G~vsll~kL~~h 1011 (1329)
.+|++.|++--+.|+ +||.|+|||+|....+.-.+..+=+-|
T Consensus 398 --------------avw~l~~s~~~~~Ll------------------------scs~DgTvr~w~~~~~~~~~f~~~~e~ 439 (577)
T KOG0642|consen 398 --------------AVWLLALSSTKDRLL------------------------SCSSDGTVRLWEPTEESPCTFGEPKEH 439 (577)
T ss_pred --------------ceeeeeeccccccee------------------------eecCCceEEeeccCCcCccccCCcccc
Confidence 578999988888999 999999999999988663123333444
Q ss_pred --cceeEEEEecCCeEEEecCCCeEEEEeccCcceEEEeeeeecCCCCcccceeEEEecCCCCCeeEecCCCccEEEEEc
Q 000725 1012 --DCVQCILVCEPKHLIAVGESGKLHLWEMNSSWSAQVEECIIPINDCIYPCIVEMKRIPKCAPLVVGHNGFGEFGIWDI 1089 (1329)
Q Consensus 1012 --~sV~cIlVcDpnhLVSaSdDGkL~IWDM~SgWsm~tee~Vi~~n~~v~p~I~elKrFpkss~lIVTgSGDgtf~LWDI 1089 (1329)
+--.++.-|+|.|.+++.--|.--+-||.++=.++++..-+.++.-.++-|.-+.--|. ..+.+++.-|..|++.|.
T Consensus 440 g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~-~~~~~~~hed~~Ir~~dn 518 (577)
T KOG0642|consen 440 GYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPT-ADITFTAHEDRSIRFFDN 518 (577)
T ss_pred CCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCC-CCeeEecccCCceecccc
Confidence 55556666699999999999999999999999999999777666667777777755566 589999999999999999
Q ss_pred cccceeeeeccCccceeE--ecccc----ccccccCcceEECc
Q 000725 1090 SKRVLVSRFSAARASIYQ--FFPIN----LFSWQRNGSVSMDA 1126 (1329)
Q Consensus 1090 skg~llqsF~ahs~sV~s--fsP~~----s~S~d~~v~tfd~~ 1126 (1329)
.+|.++.+-.+|-..|.+ +-|.+ +++.|+.++.|...
T Consensus 519 ~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld 561 (577)
T KOG0642|consen 519 KTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLD 561 (577)
T ss_pred cccccchheeeccceecceeecCCCceEEeecCCceeehhhcc
Confidence 999999999999999999 77887 56666666666543
No 234
>PRK00178 tolB translocation protein TolB; Provisional
Probab=97.83 E-value=0.0011 Score=74.45 Aligned_cols=216 Identities=10% Similarity=0.048 Sum_probs=120.8
Q ss_pred CcEEEEEecCcceeeeEEEecc-cceeEEEEe-cCCeEEEecCC---CeEEEEeccCcceEEEeeeeecCCCCcccceeE
Q 000725 990 NAVKIVKVKPGYVSVVAKLKTD-DCVQCILVC-EPKHLIAVGES---GKLHLWEMNSSWSAQVEECIIPINDCIYPCIVE 1064 (1329)
Q Consensus 990 NtVKIv~V~~G~vsll~kL~~h-~sV~cIlVc-DpnhLVSaSdD---GkL~IWDM~SgWsm~tee~Vi~~n~~v~p~I~e 1064 (1329)
..|-+++...++ + +.+..+ ..+....|+ |.++|+.++.+ .+|.+||+.++-..+... .+++ +..
T Consensus 179 ~~l~~~d~~g~~--~-~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~-----~~g~---~~~ 247 (430)
T PRK00178 179 YTLQRSDYDGAR--A-VTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITN-----FEGL---NGA 247 (430)
T ss_pred eEEEEECCCCCC--c-eEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccC-----CCCC---cCC
Confidence 357777777666 3 445455 778888999 99999877644 369999998875433221 1221 123
Q ss_pred EEecCCCCCeeE-ecCCC--ccEEEEEccccceeeeeccCcccee--Eecccc---ccccc--cCcceE--ECcchhhhc
Q 000725 1065 MKRIPKCAPLVV-GHNGF--GEFGIWDISKRVLVSRFSAARASIY--QFFPIN---LFSWQ--RNGSVS--MDASLELTN 1132 (1329)
Q Consensus 1065 lKrFpkss~lIV-TgSGD--gtf~LWDIskg~llqsF~ahs~sV~--sfsP~~---s~S~d--~~v~tf--d~~s~d~~l 1132 (1329)
. +|.+++..|+ +.+.+ ..+-+||++++...+ +..+...+. .|+|++ .++-+ +...+| +..+++..+
T Consensus 248 ~-~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~-lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~ 325 (430)
T PRK00178 248 P-AWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSR-VTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAER 325 (430)
T ss_pred e-EECCCCCEEEEEEccCCCceEEEEECCCCCeEE-cccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEE
Confidence 4 7888887665 55444 467888999987654 443433333 389987 22222 222333 444443332
Q ss_pred ccccccccc-CCCceeecCCCCccceEEEEeeccCcc---chhhcccccccCCCCcceeEEEeeeccceecCCCCCCCce
Q 000725 1133 TATTSLFSK-HSEKSSFCPSVGEDSAIWLLVSTISDS---DAQHNCMSRDCQKNPVRFWRLALLVKNRVILGSPLDPRAS 1208 (1329)
Q Consensus 1133 eatv~~fSg-dvn~VsF~P~sGeD~AiwLLVST~Sdd---~t~~Dlra~~~~gH~n~~wRLALl~K~siI~Gs~ldpra~ 1208 (1329)
. .+.+ ......|+| | +.||...+..+. ...+|+.... + ..+... +.... .
T Consensus 326 l----t~~~~~~~~~~~Sp----d-g~~i~~~~~~~~~~~l~~~dl~tg~--------~--~~lt~~----~~~~~---p 379 (430)
T PRK00178 326 V----TFVGNYNARPRLSA----D-GKTLVMVHRQDGNFHVAAQDLQRGS--------V--RILTDT----SLDES---P 379 (430)
T ss_pred e----ecCCCCccceEECC----C-CCEEEEEEccCCceEEEEEECCCCC--------E--EEccCC----CCCCC---c
Confidence 1 1112 122367888 6 667766554322 2224443221 1 122221 12222 3
Q ss_pred eeecCCCeEEeecCC---CeEEEEEccccceeeeeecccC
Q 000725 1209 AIGASSGLGIIGTND---GLVYAWELSSGNKLGILHHFKG 1245 (1329)
Q Consensus 1209 afs~SG~~gfaGT~D---GlVYmWDLstG~kL~tL~~Heg 1245 (1329)
.++++|++++..+.+ ..||++++ .|.....|..+.+
T Consensus 380 ~~spdg~~i~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~g 418 (430)
T PRK00178 380 SVAPNGTMLIYATRQQGRGVLMLVSI-NGRVRLPLPTAQG 418 (430)
T ss_pred eECCCCCEEEEEEecCCceEEEEEEC-CCCceEECcCCCC
Confidence 799999999876655 46888888 4444445554444
No 235
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=97.80 E-value=8.5e-05 Score=85.09 Aligned_cols=108 Identities=11% Similarity=0.176 Sum_probs=82.1
Q ss_pred ccCCCCcEEEEEecCcceeeeEEEecc-cceeEEEEe-cCCeEEEecCCCeEEEEeccCcceEEEeeeeecCCCCcccce
Q 000725 985 HRLDENAVKIVKVKPGYVSVVAKLKTD-DCVQCILVC-EPKHLIAVGESGKLHLWEMNSSWSAQVEECIIPINDCIYPCI 1062 (1329)
Q Consensus 985 s~seDNtVKIv~V~~G~vsll~kL~~h-~sV~cIlVc-DpnhLVSaSdDGkL~IWDM~SgWsm~tee~Vi~~n~~v~p~I 1062 (1329)
..++..-+.||++..|.- .-..|| --|.+|+|+ |+.||+++--|.+|+|=-.+...++..+- -||-.-+
T Consensus 127 kagD~~~~di~s~~~~~~---~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesfc------lGH~eFV 197 (390)
T KOG3914|consen 127 KAGDVYSFDILSADSGRC---EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFC------LGHKEFV 197 (390)
T ss_pred ecCCceeeeeecccccCc---chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhc------cccHhhe
Confidence 456777889999887662 234577 667899999 99999999999999988777766665554 1344444
Q ss_pred eEEEecCCCCCeeEecCCCccEEEEEccccceeeeeccCcc
Q 000725 1063 VEMKRIPKCAPLVVGHNGFGEFGIWDISKRVLVSRFSAARA 1103 (1329)
Q Consensus 1063 ~elKrFpkss~lIVTgSGDgtf~LWDIskg~llqsF~ahs~ 1103 (1329)
-.+ .+-+ .+++++||||+|+++||+.+|.++.+|+..+-
T Consensus 198 S~i-sl~~-~~~LlS~sGD~tlr~Wd~~sgk~L~t~dl~s~ 236 (390)
T KOG3914|consen 198 STI-SLTD-NYLLLSGSGDKTLRLWDITSGKLLDTCDLSSL 236 (390)
T ss_pred eee-eecc-CceeeecCCCCcEEEEecccCCcccccchhHh
Confidence 443 3333 56699999999999999999999999886543
No 236
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=97.80 E-value=0.00012 Score=86.48 Aligned_cols=165 Identities=15% Similarity=0.151 Sum_probs=106.6
Q ss_pred ceeeecCCCcEEEEecCccCccccCCCccccccccccccCCCCcEEEEEecCcceeeeEEEecc-cceeEEEEe-cCCeE
Q 000725 948 SCALFTPDGQYLVLLDSMKTPYCREGRSDCLCSTCTSHRLDENAVKIVKVKPGYVSVVAKLKTD-DCVQCILVC-EPKHL 1025 (1329)
Q Consensus 948 sglqFTPDGQ~LvLlgsik~p~CR~~~~dC~Cs~C~~s~seDNtVKIv~V~~G~vsll~kL~~h-~sV~cIlVc-DpnhL 1025 (1329)
++-+|+|||-=|+ +.++|+-||||+- +|- +.-+|... .+|.|+.|- +.+.+
T Consensus 108 ~~gRW~~dGtgLl------------------------t~GEDG~iKiWSr-sGM--LRStl~Q~~~~v~c~~W~p~S~~v 160 (737)
T KOG1524|consen 108 SSGRWSPDGAGLL------------------------TAGEDGVIKIWSR-SGM--LRSTVVQNEESIRCARWAPNSNSI 160 (737)
T ss_pred hhcccCCCCceee------------------------eecCCceEEEEec-cch--HHHHHhhcCceeEEEEECCCCCce
Confidence 4556777777777 8899999999985 555 55555555 789999999 77666
Q ss_pred EEecCCCeEEEEe--ccCcceEEEeeeeecCCCCcccceeEEEecCCCCCeeEecCCCccEEEEEccccceeeeeccCcc
Q 000725 1026 IAVGESGKLHLWE--MNSSWSAQVEECIIPINDCIYPCIVEMKRIPKCAPLVVGHNGFGEFGIWDISKRVLVSRFSAARA 1103 (1329)
Q Consensus 1026 VSaSdDGkL~IWD--M~SgWsm~tee~Vi~~n~~v~p~I~elKrFpkss~lIVTgSGDgtf~LWDIskg~llqsF~ahs~ 1103 (1329)
+=+- .|.+.|=- |++. +..-. -|-..|+++ -.+..+.+|+||+.|-.|++||-.-+.+ =+=.+|..
T Consensus 161 l~c~-g~h~~IKpL~~n~k--~i~Wk-------AHDGiiL~~-~W~~~s~lI~sgGED~kfKvWD~~G~~L-f~S~~~ey 228 (737)
T KOG1524|consen 161 VFCQ-GGHISIKPLAANSK--IIRWR-------AHDGLVLSL-SWSTQSNIIASGGEDFRFKIWDAQGANL-FTSAAEEY 228 (737)
T ss_pred EEec-CCeEEEeecccccc--eeEEe-------ccCcEEEEe-ecCccccceeecCCceeEEeecccCccc-ccCChhcc
Confidence 6654 34444433 3331 11111 466778888 8999999999999999999999665554 44456666
Q ss_pred ceeE--eccccccccccCcceEECcchhhhccccccccccCCCceeecCCCCccceEEEEeeccCc
Q 000725 1104 SIYQ--FFPINLFSWQRNGSVSMDASLELTNTATTSLFSKHSEKSSFCPSVGEDSAIWLLVSTISD 1167 (1329)
Q Consensus 1104 sV~s--fsP~~s~S~d~~v~tfd~~s~d~~leatv~~fSgdvn~VsF~P~sGeD~AiwLLVST~Sd 1167 (1329)
.|++ |+|+.. .-+|++.... ++. +=.|-+=+.+++| | |..+-++|...
T Consensus 229 ~ITSva~npd~~------~~v~S~nt~R--~~~---p~~GSifnlsWS~----D-GTQ~a~gt~~G 278 (737)
T KOG1524|consen 229 AITSVAFNPEKD------YLLWSYNTAR--FSS---PRVGSIFNLSWSA----D-GTQATCGTSTG 278 (737)
T ss_pred ceeeeeeccccc------eeeeeeeeee--ecC---CCccceEEEEEcC----C-CceeeccccCc
Confidence 6767 999963 2333333222 110 0011233477887 6 66666666543
No 237
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=97.76 E-value=7.6e-05 Score=57.31 Aligned_cols=36 Identities=14% Similarity=0.413 Sum_probs=34.5
Q ss_pred eeeEEEecc-cceeEEEEe-cCCeEEEecCCCeEEEEe
Q 000725 1003 SVVAKLKTD-DCVQCILVC-EPKHLIAVGESGKLHLWE 1038 (1329)
Q Consensus 1003 sll~kL~~h-~sV~cIlVc-DpnhLVSaSdDGkL~IWD 1038 (1329)
+++++|.+| ..|.||.+. ++++|+|+|.||+|+|||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 378999999 999999999 999999999999999998
No 238
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=97.75 E-value=0.012 Score=67.51 Aligned_cols=248 Identities=10% Similarity=0.078 Sum_probs=146.0
Q ss_pred CcEEEEEecCcceeeeEEEecccceeEEEEe-cCCeEEEec----------CCCeEEEEeccCcceEEEeeeeecCC-C-
Q 000725 990 NAVKIVKVKPGYVSVVAKLKTDDCVQCILVC-EPKHLIAVG----------ESGKLHLWEMNSSWSAQVEECIIPIN-D- 1056 (1329)
Q Consensus 990 NtVKIv~V~~G~vsll~kL~~h~sV~cIlVc-DpnhLVSaS----------dDGkL~IWDM~SgWsm~tee~Vi~~n-~- 1056 (1329)
|+|-+.|.+++. ++.++.+=..=+-+ ++ |.+.|..+. ++..|.|||..|.-.+.... +++. .
T Consensus 27 ~~v~ViD~~~~~--v~g~i~~G~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~--~p~~p~~ 101 (352)
T TIGR02658 27 TQVYTIDGEAGR--VLGMTDGGFLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIE--LPEGPRF 101 (352)
T ss_pred ceEEEEECCCCE--EEEEEEccCCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEc--cCCCchh
Confidence 999999999977 88888875333335 66 877776554 58999999999976665544 3322 1
Q ss_pred CcccceeEEEecCCCCCeeEecC--CCccEEEEEccccceeeeeccCccc-eeEeccccccccccCcceEECcchhhh--
Q 000725 1057 CIYPCIVEMKRIPKCAPLVVGHN--GFGEFGIWDISKRVLVSRFSAARAS-IYQFFPINLFSWQRNGSVSMDASLELT-- 1131 (1329)
Q Consensus 1057 ~v~p~I~elKrFpkss~lIVTgS--GDgtf~LWDIskg~llqsF~ahs~s-V~sfsP~~s~S~d~~v~tfd~~s~d~~-- 1131 (1329)
-+++.-.-. .+.+++..+.-.+ .+..+.+.|+++|+.+..+.-+... ||-..+......=+++....+...+.-
T Consensus 102 ~~~~~~~~~-~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~ 180 (352)
T TIGR02658 102 LVGTYPWMT-SLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNP 180 (352)
T ss_pred hccCccceE-EECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCce
Confidence 123333333 5688887666444 5899999999999999998875522 222211111111111222221111111
Q ss_pred ccccccccccCC----CceeecCCCCccceEEEEeeccCccchhhcccccccCCCCcceeEEEeeeccceecCC------
Q 000725 1132 NTATTSLFSKHS----EKSSFCPSVGEDSAIWLLVSTISDSDAQHNCMSRDCQKNPVRFWRLALLVKNRVILGS------ 1201 (1329)
Q Consensus 1132 leatv~~fSgdv----n~VsF~P~sGeD~AiwLLVST~Sdd~t~~Dlra~~~~gH~n~~wRLALl~K~siI~Gs------ 1201 (1329)
...+..-|..+. +.=.|.| .| +.|++||.- ...+.-|+..+.=. .-..|.+- =++.
T Consensus 181 ~~~~~~vf~~~~~~v~~rP~~~~---~d-g~~~~vs~e-G~V~~id~~~~~~~--~~~~~~~~-------~~~~~~~~wr 246 (352)
T TIGR02658 181 KIKPTEVFHPEDEYLINHPAYSN---KS-GRLVWPTYT-GKIFQIDLSSGDAK--FLPAIEAF-------TEAEKADGWR 246 (352)
T ss_pred EEeeeeeecCCccccccCCceEc---CC-CcEEEEecC-CeEEEEecCCCcce--ecceeeec-------cccccccccC
Confidence 111111122111 1113444 24 688888877 77777776533200 11223210 0110
Q ss_pred CCCCCceeeecCCCeEEeecC----------CCeEEEEEccccceeeeeecccCceEEEEEecCCCC-c
Q 000725 1202 PLDPRASAIGASSGLGIIGTN----------DGLVYAWELSSGNKLGILHHFKGGTVSCIATDDSGL-Q 1259 (1329)
Q Consensus 1202 ~ldpra~afs~SG~~gfaGT~----------DGlVYmWDLstG~kL~tL~~Heg~rVSCVA~dps~p-~ 1259 (1329)
|=.+...++.+.|+++|...+ .+.|.++|+.+++++..+.- +.++..|+++|++- .
T Consensus 247 P~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v--G~~~~~iavS~Dgkp~ 313 (352)
T TIGR02658 247 PGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL--GHEIDSINVSQDAKPL 313 (352)
T ss_pred CCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC--CCceeeEEECCCCCeE
Confidence 111122889999999998543 35799999999999999985 33699999998875 5
No 239
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=97.72 E-value=0.00044 Score=87.32 Aligned_cols=216 Identities=12% Similarity=0.107 Sum_probs=141.0
Q ss_pred cccceeEEEecCCCCCeeEecCCCccEEEEEccccce-------eeeeccCccceeE--ecccc----ccccccCcceEE
Q 000725 1058 IYPCIVEMKRIPKCAPLVVGHNGFGEFGIWDISKRVL-------VSRFSAARASIYQ--FFPIN----LFSWQRNGSVSM 1124 (1329)
Q Consensus 1058 v~p~I~elKrFpkss~lIVTgSGDgtf~LWDIskg~l-------lqsF~ahs~sV~s--fsP~~----s~S~d~~v~tfd 1124 (1329)
|.+.+..+..-++.+++.||||-|||+++||..+-.- -.+++--+..|++ ..+.+ .++-||.|+++.
T Consensus 1047 hs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~ 1126 (1431)
T KOG1240|consen 1047 HSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLR 1126 (1431)
T ss_pred ccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEE
Confidence 5666666534455559999999999999999876332 4555555666666 44444 457789999998
Q ss_pred Ccc--hhhhc----cccccccccCCCceeecCCCCccceEEEEeeccCccchhhcccccccCCCCcceeEEEeeecccee
Q 000725 1125 DAS--LELTN----TATTSLFSKHSEKSSFCPSVGEDSAIWLLVSTISDSDAQHNCMSRDCQKNPVRFWRLALLVKNRVI 1198 (1329)
Q Consensus 1125 ~~s--~d~~l----eatv~~fSgdvn~VsF~P~sGeD~AiwLLVST~Sdd~t~~Dlra~~~~gH~n~~wRLALl~K~siI 1198 (1329)
++- +.++. ...+.-++|. -|+++-..-++-..-|+++|.-.-+-.||.|..+ .-|++-.=-+..++
T Consensus 1127 id~~~~~~~~~~~~ri~n~~~~g~--vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~------~~w~lk~~~~hG~v 1198 (1431)
T KOG1240|consen 1127 IDHYNVSKRVATQVRIPNLKKDGV--VVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRH------DAWRLKNQLRHGLV 1198 (1431)
T ss_pred ccccccccceeeeeecccccCCCc--eEEeecccccccceeEEEEEeccceEEecchhhh------hHHhhhcCccccce
Confidence 887 44441 1222323331 1333322222323467888888888889999665 34554421122221
Q ss_pred cCCCCCCCceeeecCCCeEEeecCCCeEEEEEccccceeeeeecccCceEEEEEecCCCC--ceEEEecCCCCCCccccC
Q 000725 1199 LGSPLDPRASAIGASSGLGIIGTNDGLVYAWELSSGNKLGILHHFKGGTVSCIATDDSGL--QALAVAGDGPDGGRRQRD 1276 (1329)
Q Consensus 1199 ~Gs~ldpra~afs~SG~~gfaGT~DGlVYmWDLstG~kL~tL~~Heg~rVSCVA~dps~p--~~~AsA~d~~d~~~r~~~ 1276 (1329)
++.|+++.|..+++||.-|.+-+|||-=+.-+..+++=...+..-|.++|..+ -+..+|+.+..+-+-+|.
T Consensus 1199 -------TSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn 1271 (1431)
T KOG1240|consen 1199 -------TSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWN 1271 (1431)
T ss_pred -------eEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeee
Confidence 46789999999999999999999999999999888643334788889999887 777777654555555555
Q ss_pred CCCCCCCcEEEee
Q 000725 1277 PRHGQNDHVRIWK 1289 (1329)
Q Consensus 1277 ~~~s~D~~VRiW~ 1289 (1329)
---| ..+--+|.
T Consensus 1272 ~~~g-~~~~vl~~ 1283 (1431)
T KOG1240|consen 1272 METG-LRQTVLWA 1283 (1431)
T ss_pred cccC-cceEEEEc
Confidence 5333 33333443
No 240
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=97.67 E-value=0.00027 Score=80.21 Aligned_cols=207 Identities=14% Similarity=0.200 Sum_probs=137.2
Q ss_pred eeecCCCcEEEEecCccCccccCCCccccccccccccCCCCcEEEEEecCcceeeeEEEecccceeEEEEe-cCCeE-EE
Q 000725 950 ALFTPDGQYLVLLDSMKTPYCREGRSDCLCSTCTSHRLDENAVKIVKVKPGYVSVVAKLKTDDCVQCILVC-EPKHL-IA 1027 (1329)
Q Consensus 950 lqFTPDGQ~LvLlgsik~p~CR~~~~dC~Cs~C~~s~seDNtVKIv~V~~G~vsll~kL~~h~sV~cIlVc-DpnhL-VS 1027 (1329)
..|+|+|+||+ ++++- -|-|=|+++ ..+++-|.--+.|+-|.+. |.-|+ ..
T Consensus 14 c~fSp~g~yiA------------------------s~~~y-rlviRd~~t--lq~~qlf~cldki~yieW~ads~~ilC~ 66 (447)
T KOG4497|consen 14 CSFSPCGNYIA------------------------SLSRY-RLVIRDSET--LQLHQLFLCLDKIVYIEWKADSCHILCV 66 (447)
T ss_pred eeECCCCCeee------------------------eeeee-EEEEeccch--hhHHHHHHHHHHhhheeeeccceeeeee
Confidence 57999999999 66665 555667776 4455544444999999999 88776 46
Q ss_pred ecCCCeEEEEe-ccCcceEEEeeeeecCCCCcccceeEEEecCCCC-CeeEecCCCccEEEEEccccce-eeeeccCccc
Q 000725 1028 VGESGKLHLWE-MNSSWSAQVEECIIPINDCIYPCIVEMKRIPKCA-PLVVGHNGFGEFGIWDISKRVL-VSRFSAARAS 1104 (1329)
Q Consensus 1028 aSdDGkL~IWD-M~SgWsm~tee~Vi~~n~~v~p~I~elKrFpkss-~lIVTgSGDgtf~LWDIskg~l-lqsF~ahs~s 1104 (1329)
+..|+++++|+ ...-|-.+.-+ +-. .+... +..+++ |++.+..+|-.|++|-+-+... +--..-|.--
T Consensus 67 ~yk~~~vqvwsl~Qpew~ckIde-------g~a-gls~~-~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~k 137 (447)
T KOG4497|consen 67 AYKDPKVQVWSLVQPEWYCKIDE-------GQA-GLSSI-SWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVK 137 (447)
T ss_pred eeccceEEEEEeecceeEEEecc-------CCC-cceee-eECCCcceEeeeecceeEEEEEEeccceeEEecccccCce
Confidence 68899999999 56778888777 322 23344 677888 8888899999999999877665 2233445557
Q ss_pred eeEeccccccccccCcceEECcchhhh-----------c---cccccccccCCCceeecCCCCccceEEEEeeccCccch
Q 000725 1105 IYQFFPINLFSWQRNGSVSMDASLELT-----------N---TATTSLFSKHSEKSSFCPSVGEDSAIWLLVSTISDSDA 1170 (1329)
Q Consensus 1105 V~sfsP~~s~S~d~~v~tfd~~s~d~~-----------l---eatv~~fSgdvn~VsF~P~sGeD~AiwLLVST~Sdd~t 1170 (1329)
+++|.|++-| .-+..-++|..- + .-..+...| +-.+| | +.||.| -+.
T Consensus 138 g~~f~~dg~f-----~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~Dltg----ieWsP----d-g~~laV-----wd~ 198 (447)
T KOG4497|consen 138 GYAFHPDGQF-----CAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTG----IEWSP----D-GNWLAV-----WDN 198 (447)
T ss_pred eEEECCCCce-----eeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccC----ceECC----C-CcEEEE-----ecc
Confidence 7789999821 112222222222 1 112222333 77899 6 666664 234
Q ss_pred hhccc--ccccCCCCcceeEEEeeeccceecCCCCCCCceeeecCCCeEEeecCCCeEEEEEccc
Q 000725 1171 QHNCM--SRDCQKNPVRFWRLALLVKNRVILGSPLDPRASAIGASSGLGIIGTNDGLVYAWELSS 1233 (1329)
Q Consensus 1171 ~~Dlr--a~~~~gH~n~~wRLALl~K~siI~Gs~ldpra~afs~SG~~gfaGT~DGlVYmWDLst 1233 (1329)
+.|+. +.+ |-|.+ ..++-+|+++.+..|+.|+.+.+-.-.|
T Consensus 199 ~Leykv~aYe--------~~lG~--------------k~v~wsP~~qflavGsyD~~lrvlnh~t 241 (447)
T KOG4497|consen 199 VLEYKVYAYE--------RGLGL--------------KFVEWSPCNQFLAVGSYDQMLRVLNHFT 241 (447)
T ss_pred hhhheeeeee--------eccce--------------eEEEeccccceEEeeccchhhhhhceee
Confidence 44444 333 22343 4588999999999999999887644333
No 241
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=97.65 E-value=0.0016 Score=73.84 Aligned_cols=216 Identities=11% Similarity=0.058 Sum_probs=144.4
Q ss_pred cceeeecCCCcEEEEecCccCccccCCCccccccccccccCCCCcEEEEEecCcc-eeeeEEEecc-cceeEEEEe-cCC
Q 000725 947 RSCALFTPDGQYLVLLDSMKTPYCREGRSDCLCSTCTSHRLDENAVKIVKVKPGY-VSVVAKLKTD-DCVQCILVC-EPK 1023 (1329)
Q Consensus 947 rsglqFTPDGQ~LvLlgsik~p~CR~~~~dC~Cs~C~~s~seDNtVKIv~V~~G~-vsll~kL~~h-~sV~cIlVc-Dpn 1023 (1329)
.++.+|++|++-++ .+-+.+-|-|+.....- -++.++|+-| ..|.+|-|. -.|
T Consensus 13 itchAwn~drt~iA------------------------v~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~sn 68 (361)
T KOG1523|consen 13 ITCHAWNSDRTQIA------------------------VSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSN 68 (361)
T ss_pred eeeeeecCCCceEE------------------------eccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCC
Confidence 56889999999999 66677889999977665 5899999999 889999998 889
Q ss_pred eEEEecCCCeEEEEeccCcce-EEEeeeeecCCCCcccceeEEEecCCCCCeeEecCCCccEEEEEcccccee----eee
Q 000725 1024 HLIAVGESGKLHLWEMNSSWS-AQVEECIIPINDCIYPCIVEMKRIPKCAPLVVGHNGFGEFGIWDISKRVLV----SRF 1098 (1329)
Q Consensus 1024 hLVSaSdDGkL~IWDM~SgWs-m~tee~Vi~~n~~v~p~I~elKrFpkss~lIVTgSGDgtf~LWDIskg~ll----qsF 1098 (1329)
+||++++|+.-+||...++=. .+++. +.--|+ -.-+| +..+..+.++.|||...|++|=.+.-+-= +.=
T Consensus 69 rIvtcs~drnayVw~~~~~~~Wkptlv-LlRiNr----AAt~V-~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhik 142 (361)
T KOG1523|consen 69 RIVTCSHDRNAYVWTQPSGGTWKPTLV-LLRINR----AATCV-KWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIK 142 (361)
T ss_pred ceeEccCCCCccccccCCCCeecccee-EEEecc----ceeeE-eecCcCceEEeccCccEEEEEEEecccceehhhhhC
Confidence 999999999999999854211 12222 000111 11122 55667899999999999999987766641 122
Q ss_pred ccCccceeE--ecccc----ccccccCcceEEC--cchhhhccccccccccCCCceeecCCCCccceEEEEeeccCccch
Q 000725 1099 SAARASIYQ--FFPIN----LFSWQRNGSVSMD--ASLELTNTATTSLFSKHSEKSSFCPSVGEDSAIWLLVSTISDSDA 1170 (1329)
Q Consensus 1099 ~ahs~sV~s--fsP~~----s~S~d~~v~tfd~--~s~d~~leatv~~fSgdvn~VsF~P~sGeD~AiwLLVST~Sdd~t 1170 (1329)
..+..+|.+ .-|.. .+|-|+.+++|+. -.+|++ .+...|=+. .| ||
T Consensus 143 kPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdek-pap~pWgsk-------~P-----FG------------- 196 (361)
T KOG1523|consen 143 KPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEK-PAPTPWGSK-------MP-----FG------------- 196 (361)
T ss_pred CccccceeeeeccCCcceecccccCcceeEEEEeeeccccC-CCCCCCccC-------Cc-----HH-------------
Confidence 345667777 44444 6677888888764 222222 111111111 11 11
Q ss_pred hhcccccccCCCCcceeEEEeeeccceecCCCCCCCceeeecCCCeEEeecCCCeEEEEEccccc-eeeee
Q 000725 1171 QHNCMSRDCQKNPVRFWRLALLVKNRVILGSPLDPRASAIGASSGLGIIGTNDGLVYAWELSSGN-KLGIL 1240 (1329)
Q Consensus 1171 ~~Dlra~~~~gH~n~~wRLALl~K~siI~Gs~ldpra~afs~SG~~gfaGT~DGlVYmWDLstG~-kL~tL 1240 (1329)
--..+|+.-..+..+ +.|+++|..+.=-++|..|++=|-.... ++.++
T Consensus 197 ---~lm~E~~~~ggwvh~-------------------v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~ 245 (361)
T KOG1523|consen 197 ---QLMSEASSSGGWVHG-------------------VLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSV 245 (361)
T ss_pred ---HHHHhhccCCCceee-------------------eEeCCCCCEeeEecCCCceEEeecCCCchhccch
Confidence 112233322333334 7899999999999999999999988886 55544
No 242
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.59 E-value=0.00059 Score=81.06 Aligned_cols=162 Identities=12% Similarity=0.107 Sum_probs=112.9
Q ss_pred cCCCCCeeEecCCCccEEEEEccccceeeeeccCcc-------ceeE----ecccc------------------cccccc
Q 000725 1068 IPKCAPLVVGHNGFGEFGIWDISKRVLVSRFSAARA-------SIYQ----FFPIN------------------LFSWQR 1118 (1329)
Q Consensus 1068 Fpkss~lIVTgSGDgtf~LWDIskg~llqsF~ahs~-------sV~s----fsP~~------------------s~S~d~ 1118 (1329)
||+...+.+.-.+||.+||||.+++++.|.|..-.. .++. .+|-- ++..+|
T Consensus 1 ~~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g 80 (541)
T KOG4547|consen 1 SPPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQG 80 (541)
T ss_pred CCchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCc
Confidence 466778889999999999999999999999974221 1121 22211 566788
Q ss_pred CcceEECcchhhhc--cccccccccCCCceeecCCCCccceEEEEeeccCccchhhcccccccCCCCcceeEEEeeeccc
Q 000725 1119 NGSVSMDASLELTN--TATTSLFSKHSEKSSFCPSVGEDSAIWLLVSTISDSDAQHNCMSRDCQKNPVRFWRLALLVKNR 1196 (1329)
Q Consensus 1119 ~v~tfd~~s~d~~l--eatv~~fSgdvn~VsF~P~sGeD~AiwLLVST~Sdd~t~~Dlra~~~~gH~n~~wRLALl~K~s 1196 (1329)
.|-+|++..++.+. ...++ -+.+|.+... .+ +-||..+.++--.-.|+..... +-+.|.
T Consensus 81 ~v~~ys~~~g~it~~~st~~h--~~~v~~~~~~----~~-~~ciyS~~ad~~v~~~~~~~~~----~~~~~~-------- 141 (541)
T KOG4547|consen 81 SVLLYSVAGGEITAKLSTDKH--YGNVNEILDA----QR-LGCIYSVGADLKVVYILEKEKV----IIRIWK-------- 141 (541)
T ss_pred cEEEEEecCCeEEEEEecCCC--CCcceeeecc----cc-cCceEecCCceeEEEEecccce----eeeeec--------
Confidence 88888888888882 21111 1223334323 35 5455554444444446665544 444444
Q ss_pred eecCCCCCCCceeeecCCCeEEeecCCCeEEEEEccccceeeeeecccCceEEEEEec
Q 000725 1197 VILGSPLDPRASAIGASSGLGIIGTNDGLVYAWELSSGNKLGILHHFKGGTVSCIATD 1254 (1329)
Q Consensus 1197 iI~Gs~ldpra~afs~SG~~gfaGT~DGlVYmWDLstG~kL~tL~~Heg~rVSCVA~d 1254 (1329)
+.+.-+...++++.|+.+.++| +.|.+||+.+++++.++-||-+ .|+|+++-
T Consensus 142 ---~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s-~v~t~~f~ 193 (541)
T KOG4547|consen 142 ---EQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGS-PVRTLSFT 193 (541)
T ss_pred ---cCCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCc-ceEEEEEE
Confidence 4566677899999999988876 6899999999999999999999 89999986
No 243
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=97.58 E-value=0.00012 Score=56.29 Aligned_cols=39 Identities=21% Similarity=0.431 Sum_probs=34.4
Q ss_pred cceeeeeecccCceEEEEEecCCCCceEEEecCCCCCCccccCCCCCCCCcEEEee
Q 000725 1234 GNKLGILHHFKGGTVSCIATDDSGLQALAVAGDGPDGGRRQRDPRHGQNDHVRIWK 1289 (1329)
Q Consensus 1234 G~kL~tL~~Heg~rVSCVA~dps~p~~~AsA~d~~d~~~r~~~~~~s~D~~VRiW~ 1289 (1329)
|+.+.++++|++ .|.||+.+|.+.. +|+| |.|++||||+
T Consensus 1 g~~~~~~~~h~~-~i~~i~~~~~~~~-~~s~---------------~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSS-SINSIAWSPDGNF-LASG---------------SSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSS-SEEEEEEETTSSE-EEEE---------------ETTSEEEEEE
T ss_pred CeEEEEEcCCCC-cEEEEEEeccccc-ceee---------------CCCCEEEEEC
Confidence 578899999999 8999999988665 8888 7899999996
No 244
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=97.58 E-value=0.0057 Score=78.07 Aligned_cols=236 Identities=12% Similarity=0.086 Sum_probs=129.9
Q ss_pred cceeeecCCCcEEEEecCccCccccCCCccccccccccccCCCCcEEEEEecCcceeeeEEE-------ec--------c
Q 000725 947 RSCALFTPDGQYLVLLDSMKTPYCREGRSDCLCSTCTSHRLDENAVKIVKVKPGYVSVVAKL-------KT--------D 1011 (1329)
Q Consensus 947 rsglqFTPDGQ~LvLlgsik~p~CR~~~~dC~Cs~C~~s~seDNtVKIv~V~~G~vsll~kL-------~~--------h 1011 (1329)
-.||+|.|||+.|.. .-...+.|+.++..+|.+..+..- .+ .
T Consensus 626 P~GIavd~~gn~LYV-----------------------aDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~l 682 (1057)
T PLN02919 626 PQGLAYNAKKNLLYV-----------------------ADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVL 682 (1057)
T ss_pred CcEEEEeCCCCEEEE-----------------------EeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhc
Confidence 489999999986541 223447899999998874443221 00 1
Q ss_pred cceeEEEEe--cCCeEEEecCCCeEEEEeccCcceEEEee--eeecCCCC-----cccceeEEEecCCCCC-eeEecCCC
Q 000725 1012 DCVQCILVC--EPKHLIAVGESGKLHLWEMNSSWSAQVEE--CIIPINDC-----IYPCIVEMKRIPKCAP-LVVGHNGF 1081 (1329)
Q Consensus 1012 ~sV~cIlVc--DpnhLVSaSdDGkL~IWDM~SgWsm~tee--~Vi~~n~~-----v~p~I~elKrFpkss~-lIVTgSGD 1081 (1329)
..-.+|.|. +.+..||.+.+++|.+||..++++....- +....++. .+..-..+ .|.+++. +.|+-+++
T Consensus 683 n~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GI-avspdG~~LYVADs~n 761 (1057)
T PLN02919 683 NSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGI-SLSPDLKELYIADSES 761 (1057)
T ss_pred CCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEE-EEeCCCCEEEEEECCC
Confidence 122577777 34566888999999999999887643211 00000110 11122335 6777765 88899999
Q ss_pred ccEEEEEccccceeeeeccCccceeEeccccccccccCcceEECcchhhh-ccccccccccCCCceeecCCCCccceEEE
Q 000725 1082 GEFGIWDISKRVLVSRFSAARASIYQFFPINLFSWQRNGSVSMDASLELT-NTATTSLFSKHSEKSSFCPSVGEDSAIWL 1160 (1329)
Q Consensus 1082 gtf~LWDIskg~llqsF~ahs~sV~sfsP~~s~S~d~~v~tfd~~s~d~~-leatv~~fSgdvn~VsF~P~sGeD~AiwL 1160 (1329)
+++++||+.++... ..+.+..+ .|... +..+..+-. ..+.-..-.+ +.|.| | +.-+
T Consensus 762 ~~Irv~D~~tg~~~--~~~gg~~~---~~~~l---------~~fG~~dG~g~~~~l~~P~G----vavd~----d-G~LY 818 (1057)
T PLN02919 762 SSIRALDLKTGGSR--LLAGGDPT---FSDNL---------FKFGDHDGVGSEVLLQHPLG----VLCAK----D-GQIY 818 (1057)
T ss_pred CeEEEEECCCCcEE--EEEecccc---cCccc---------ccccCCCCchhhhhccCCce----eeEeC----C-CcEE
Confidence 99999999987631 11222221 11111 111111100 0000001123 66776 3 3323
Q ss_pred EeeccCccchhhcccccccCCCCcceeEEEeee----ccceecCCCC-CCCceeeecCCCeEEeecCCCeEEEEEccccc
Q 000725 1161 LVSTISDSDAQHNCMSRDCQKNPVRFWRLALLV----KNRVILGSPL-DPRASAIGASSGLGIIGTNDGLVYAWELSSGN 1235 (1329)
Q Consensus 1161 LVST~Sdd~t~~Dlra~~~~gH~n~~wRLALl~----K~siI~Gs~l-dpra~afs~SG~~gfaGT~DGlVYmWDLstG~ 1235 (1329)
.+-+.+..++.||...... -.++.-- ++....-..| -|+.++++++|+.+++-+.+++|.+||+.+++
T Consensus 819 VADs~N~rIrviD~~tg~v-------~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~ 891 (1057)
T PLN02919 819 VADSYNHKIKKLDPATKRV-------TTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGE 891 (1057)
T ss_pred EEECCCCEEEEEECCCCeE-------EEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCc
Confidence 3334455555566542220 0011000 0000001112 48899999999999999999999999999987
Q ss_pred e
Q 000725 1236 K 1236 (1329)
Q Consensus 1236 k 1236 (1329)
.
T Consensus 892 ~ 892 (1057)
T PLN02919 892 A 892 (1057)
T ss_pred c
Confidence 4
No 245
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.54 E-value=0.001 Score=79.19 Aligned_cols=109 Identities=17% Similarity=0.205 Sum_probs=93.1
Q ss_pred CCCcEEEEEecCcceeeeEEEec--c-cceeEEEEe-cCCeEEEecCCCeEEEEeccCcceEEEeeeeecCCCCccccee
Q 000725 988 DENAVKIVKVKPGYVSVVAKLKT--D-DCVQCILVC-EPKHLIAVGESGKLHLWEMNSSWSAQVEECIIPINDCIYPCIV 1063 (1329)
Q Consensus 988 eDNtVKIv~V~~G~vsll~kL~~--h-~sV~cIlVc-DpnhLVSaSdDGkL~IWDM~SgWsm~tee~Vi~~n~~v~p~I~ 1063 (1329)
-.+.|-+++++.|- +-.+|.+ | +.|.||++. +-.+|.|++.|+++-+|+..+.=.++..- |.-+...
T Consensus 78 ~~g~v~~ys~~~g~--it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~-------~~~~~~~ 148 (541)
T KOG4547|consen 78 PQGSVLLYSVAGGE--ITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWK-------EQKPLVS 148 (541)
T ss_pred CCccEEEEEecCCe--EEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeec-------cCCCccc
Confidence 45678889999998 8888884 4 899999999 99999999999999999999877777766 7777777
Q ss_pred EEEecCCCCCeeEecCCCccEEEEEccccceeeeeccCccceeEe
Q 000725 1064 EMKRIPKCAPLVVGHNGFGEFGIWDISKRVLVSRFSAARASIYQF 1108 (1329)
Q Consensus 1064 elKrFpkss~lIVTgSGDgtf~LWDIskg~llqsF~ahs~sV~sf 1108 (1329)
.+ .+.+++-+++++| ++|.+|||+++..+++|.+|++.|-++
T Consensus 149 sl-~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~ 190 (541)
T KOG4547|consen 149 SL-CISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTL 190 (541)
T ss_pred eE-EEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEE
Confidence 77 6667677777665 589999999999999999999999883
No 246
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=97.53 E-value=0.0096 Score=73.65 Aligned_cols=165 Identities=14% Similarity=0.202 Sum_probs=107.4
Q ss_pred eeeeeccCCeEEEEEEeccccccceEEEEEEeeeCCCCCCCCceeecccccccccccccccccccccceeeecCCCcEEE
Q 000725 881 SVLLSTTGDKIYVCVSCGFLVDKKRTLFIYTVDIQEPRVGNPSCVGHTSVMLPFLKDNFGREIALERSCALFTPDGQYLV 960 (1329)
Q Consensus 881 sv~l~t~~~ei~IcVlCG~L~~~~r~Lf~Yki~i~~~~~~~p~~vg~t~~llp~~~~~~~~~~~~ersglqFTPDGQ~Lv 960 (1329)
+|+.+-.++--.|+--|+ +|+|++.-+- +..++ +.-..+-++.....+|+|.|+||+
T Consensus 165 ~I~~~~~ge~~~i~~~~~--------~~~~~v~~~~-~~~~~--------------~~~~~~Htf~~t~~~~spn~~~~A 221 (792)
T KOG1963|consen 165 SIVDNNSGEFKGIVHMCK--------IHIYFVPKHT-KHTSS--------------RDITVHHTFNITCVALSPNERYLA 221 (792)
T ss_pred cEEEcCCceEEEEEEeee--------EEEEEecccc-eeecc--------------chhhhhhcccceeEEeccccceEE
Confidence 455666666688888886 5788875433 21111 122333445578899999999999
Q ss_pred EecCccCccccCCCccccccccccccCCCCcEEEEEecC--cceeeeEEEecc-cceeEEEEe-cCCeEEEecCCCeEEE
Q 000725 961 LLDSMKTPYCREGRSDCLCSTCTSHRLDENAVKIVKVKP--GYVSVVAKLKTD-DCVQCILVC-EPKHLIAVGESGKLHL 1036 (1329)
Q Consensus 961 Llgsik~p~CR~~~~dC~Cs~C~~s~seDNtVKIv~V~~--G~vsll~kL~~h-~sV~cIlVc-DpnhLVSaSdDGkL~I 1036 (1329)
++-.|+.|.+|.--. +-..--+.|.=| +.|.|+.++ |..+|.|+|..|-|-+
T Consensus 222 ------------------------a~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~ 277 (792)
T KOG1963|consen 222 ------------------------AGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVL 277 (792)
T ss_pred ------------------------EeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEE
Confidence 888889999998433 444456777777 999999999 9999999999999999
Q ss_pred EeccCcceEEEeeeeecCCCCcccceeEEEecCCCCCeeEecCCCccEEEE---EccccceeeeeccC
Q 000725 1037 WEMNSSWSAQVEECIIPINDCIYPCIVEMKRIPKCAPLVVGHNGFGEFGIW---DISKRVLVSRFSAA 1101 (1329)
Q Consensus 1037 WDM~SgWsm~tee~Vi~~n~~v~p~I~elKrFpkss~lIVTgSGDgtf~LW---DIskg~llqsF~ah 1101 (1329)
|-|.|+- +.+- .=.+..|..+ -+.+++.+...+-+|-.|-|= |++-..-||.+...
T Consensus 278 Wq~~T~~--kqfL------PRLgs~I~~i-~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~ 336 (792)
T KOG1963|consen 278 WQLETGK--KQFL------PRLGSPILHI-VVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPP 336 (792)
T ss_pred EeecCCC--cccc------cccCCeeEEE-EEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCC
Confidence 9999986 3332 0123334443 344444444444444444333 33333445555544
No 247
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.45 E-value=0.0094 Score=67.81 Aligned_cols=229 Identities=15% Similarity=0.130 Sum_probs=147.4
Q ss_pred cEEEEecCccCccccCCCccccccccccccCCCCcEEEEEecCcceeeeEEEecccceeEEEEecCCeEEEecCCCeEEE
Q 000725 957 QYLVLLDSMKTPYCREGRSDCLCSTCTSHRLDENAVKIVKVKPGYVSVVAKLKTDDCVQCILVCEPKHLIAVGESGKLHL 1036 (1329)
Q Consensus 957 Q~LvLlgsik~p~CR~~~~dC~Cs~C~~s~seDNtVKIv~V~~G~vsll~kL~~h~sV~cIlVcDpnhLVSaSdDGkL~I 1036 (1329)
+||+|+|-=.- ..+..|.|-|||=.... ++.+|+=.-.|..|.+ ...|||.+= ..+|+|
T Consensus 59 N~laLVGGg~~-----------------pky~pNkviIWDD~k~~--~i~el~f~~~I~~V~l-~r~riVvvl-~~~I~V 117 (346)
T KOG2111|consen 59 NYLALVGGGSR-----------------PKYPPNKVIIWDDLKER--CIIELSFNSEIKAVKL-RRDRIVVVL-ENKIYV 117 (346)
T ss_pred ceEEEecCCCC-----------------CCCCCceEEEEecccCc--EEEEEEeccceeeEEE-cCCeEEEEe-cCeEEE
Confidence 48999983332 46778999999966666 8899998899988766 566777765 789999
Q ss_pred Eecc-CcceEEEeeeeecCCCCcccceeEEEecCCCCCeeE--ecCCCccEEEEEccccce--eeeeccCccceeE--ec
Q 000725 1037 WEMN-SSWSAQVEECIIPINDCIYPCIVEMKRIPKCAPLVV--GHNGFGEFGIWDISKRVL--VSRFSAARASIYQ--FF 1109 (1329)
Q Consensus 1037 WDM~-SgWsm~tee~Vi~~n~~v~p~I~elKrFpkss~lIV--TgSGDgtf~LWDIskg~l--lqsF~ahs~sV~s--fs 1109 (1329)
|..+ -=-.+..++...-+++ ...+ .|-....+| =|---|.+.|=|+.+-.. -+.+.||-++|-+ ++
T Consensus 118 ytF~~n~k~l~~~et~~NPkG-----lC~~--~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln 190 (346)
T KOG2111|consen 118 YTFPDNPKLLHVIETRSNPKG-----LCSL--CPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALN 190 (346)
T ss_pred EEcCCChhheeeeecccCCCc-----eEee--cCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEc
Confidence 9966 3344555553332333 1111 111111111 133458899999988766 6899999999988 77
Q ss_pred ccc----ccccccC-cceEECcchhhh----ccccccccccCCCceeecCCCCccceEEEEeeccCccchhhcccc---c
Q 000725 1110 PIN----LFSWQRN-GSVSMDASLELT----NTATTSLFSKHSEKSSFCPSVGEDSAIWLLVSTISDSDAQHNCMS---R 1177 (1329)
Q Consensus 1110 P~~----s~S~d~~-v~tfd~~s~d~~----leatv~~fSgdvn~VsF~P~sGeD~AiwLLVST~Sdd~t~~Dlra---~ 1177 (1329)
-.| ++|-.|+ ||+|++.++++. |+.... ++-.++|+| | +.||-||+.-.+.-.|-++- .
T Consensus 191 ~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A----~iy~iaFSp----~-~s~LavsSdKgTlHiF~l~~~~~~ 261 (346)
T KOG2111|consen 191 LQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRA----DIYCIAFSP----N-SSWLAVSSDKGTLHIFSLRDTENT 261 (346)
T ss_pred CCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchh----eEEEEEeCC----C-ccEEEEEcCCCeEEEEEeecCCCC
Confidence 777 6677765 899999999988 232222 444499999 8 89999987766666665551 1
Q ss_pred cc--CCCCc-------------ceeEEEeeeccceecCCCCCCCceeeecCCCeEEeecCCCeEEEEEc
Q 000725 1178 DC--QKNPV-------------RFWRLALLVKNRVILGSPLDPRASAIGASSGLGIIGTNDGLVYAWEL 1231 (1329)
Q Consensus 1178 ~~--~gH~n-------------~~wRLALl~K~siI~Gs~ldpra~afs~SG~~gfaGT~DGlVYmWDL 1231 (1329)
.- +.++- ..|+.-|..- ++=+++|+..-..+++=.-||.-|=..+
T Consensus 262 ~~~~SSl~~~~~~lpky~~S~wS~~~f~l~~~---------~~~~~~fg~~~nsvi~i~~Dgsy~k~~f 321 (346)
T KOG2111|consen 262 EDESSSLSFKRLVLPKYFSSEWSFAKFQLPQG---------TQCIIAFGSETNTVIAICADGSYYKFKF 321 (346)
T ss_pred ccccccccccccccchhcccceeEEEEEccCC---------CcEEEEecCCCCeEEEEEeCCcEEEEEe
Confidence 11 22321 2233333333 3444555555466666666777665444
No 248
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=97.44 E-value=0.00062 Score=76.44 Aligned_cols=101 Identities=13% Similarity=0.082 Sum_probs=77.5
Q ss_pred ccCCCCcEEEEEecCcceeeeEEEecc-cceeEEEEe--cCCeEEEecCCCeEEEEeccCcceEEEeeeeecCCCCcccc
Q 000725 985 HRLDENAVKIVKVKPGYVSVVAKLKTD-DCVQCILVC--EPKHLIAVGESGKLHLWEMNSSWSAQVEECIIPINDCIYPC 1061 (1329)
Q Consensus 985 s~seDNtVKIv~V~~G~vsll~kL~~h-~sV~cIlVc--DpnhLVSaSdDGkL~IWDM~SgWsm~tee~Vi~~n~~v~p~ 1061 (1329)
+.-.++.+-+|+-..+.++-++++++| .+.=--.+. +|+-+.++||||+|.-||... +. .||-..++-|...
T Consensus 138 vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~----p~-~~i~~n~kvH~~G 212 (339)
T KOG0280|consen 138 VSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRI----PK-TFIWHNSKVHTSG 212 (339)
T ss_pred EEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecC----Cc-ceeeecceeeecc
Confidence 333444555677777776666688888 444444455 999999999999999999871 11 4555667778888
Q ss_pred eeEEEecCCCCCeeEecCCCccEEEEEcc
Q 000725 1062 IVEMKRIPKCAPLVVGHNGFGEFGIWDIS 1090 (1329)
Q Consensus 1062 I~elKrFpkss~lIVTgSGDgtf~LWDIs 1090 (1329)
+..++.=|+.++.|+||++|..|++||.+
T Consensus 213 V~SI~ss~~~~~~I~TGsYDe~i~~~DtR 241 (339)
T KOG0280|consen 213 VVSIYSSPPKPTYIATGSYDECIRVLDTR 241 (339)
T ss_pred eEEEecCCCCCceEEEeccccceeeeehh
Confidence 99988778889999999999999999986
No 249
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=97.40 E-value=0.019 Score=65.94 Aligned_cols=246 Identities=11% Similarity=0.103 Sum_probs=138.2
Q ss_pred eeeecCCCcEEEEecCccCccccCCCccccccccccccCCCCcEEEEEecCcceeeeEEEecc--------cceeEEEEe
Q 000725 949 CALFTPDGQYLVLLDSMKTPYCREGRSDCLCSTCTSHRLDENAVKIVKVKPGYVSVVAKLKTD--------DCVQCILVC 1020 (1329)
Q Consensus 949 glqFTPDGQ~LvLlgsik~p~CR~~~~dC~Cs~C~~s~seDNtVKIv~V~~G~vsll~kL~~h--------~sV~cIlVc 1020 (1329)
|+ ++|||++|..-.++ |=|- .-+=.+..|.+||++++. ++.++.-= ..-.-+.++
T Consensus 51 ~~-~spDg~~lyva~~~---~~R~-----------~~G~~~d~V~v~D~~t~~--~~~~i~~p~~p~~~~~~~~~~~~ls 113 (352)
T TIGR02658 51 PV-VASDGSFFAHASTV---YSRI-----------ARGKRTDYVEVIDPQTHL--PIADIELPEGPRFLVGTYPWMTSLT 113 (352)
T ss_pred ee-ECCCCCEEEEEecc---cccc-----------ccCCCCCEEEEEECccCc--EEeEEccCCCchhhccCccceEEEC
Confidence 44 99999999822221 1110 123468999999999977 88887731 222356666
Q ss_pred -cCCeEEEec-C-CCeEEEEeccCcceEEEeeeeecCCCCcccce---eEEEecCCCCCeeEecCCCccEEEEEccccce
Q 000725 1021 -EPKHLIAVG-E-SGKLHLWEMNSSWSAQVEECIIPINDCIYPCI---VEMKRIPKCAPLVVGHNGFGEFGIWDISKRVL 1094 (1329)
Q Consensus 1021 -DpnhLVSaS-d-DGkL~IWDM~SgWsm~tee~Vi~~n~~v~p~I---~elKrFpkss~lIVTgSGDgtf~LWDIskg~l 1094 (1329)
|.++|.-+- + +..|-|.|+.++=++..-. .|+..-+++.- +-+ -+..-..+.++-+.+|+.. + .-
T Consensus 114 ~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~--vp~~~~vy~t~e~~~~~-~~~Dg~~~~v~~d~~g~~~-----~-~~ 184 (352)
T TIGR02658 114 PDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMD--VPDCYHIFPTANDTFFM-HCRDGSLAKVGYGTKGNPK-----I-KP 184 (352)
T ss_pred CCCCEEEEecCCCCCEEEEEECCCCcEEEEEe--CCCCcEEEEecCCccEE-EeecCceEEEEecCCCceE-----E-ee
Confidence 888887444 4 7999999999976665444 12211122210 000 1112223333333344311 1 11
Q ss_pred eeeeccCccceeE---ecc-cc---ccccccCcceEECcchhhh-cc---------ccccccccCCCceeecCCCCccce
Q 000725 1095 VSRFSAARASIYQ---FFP-IN---LFSWQRNGSVSMDASLELT-NT---------ATTSLFSKHSEKSSFCPSVGEDSA 1157 (1329)
Q Consensus 1095 lqsF~ahs~sV~s---fsP-~~---s~S~d~~v~tfd~~s~d~~-le---------atv~~fSgdvn~VsF~P~sGeD~A 1157 (1329)
...|++-.+.|+. |+| ++ .-|+.|.|.+.+.+.-+-. +. ....|--+...-++|+| | +
T Consensus 185 ~~vf~~~~~~v~~rP~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~----d-g 259 (352)
T TIGR02658 185 TEVFHPEDEYLINHPAYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHR----A-R 259 (352)
T ss_pred eeeecCCccccccCCceEcCCCcEEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcC----C-C
Confidence 2335443344444 566 55 2344577777775443222 10 11123344444488998 6 6
Q ss_pred EEEEeeccC----------ccchhhcccccccCCCCcceeEEEeeeccceecCCCCCCCceeeecCCC-eEEeec-CCCe
Q 000725 1158 IWLLVSTIS----------DSDAQHNCMSRDCQKNPVRFWRLALLVKNRVILGSPLDPRASAIGASSG-LGIIGT-NDGL 1225 (1329)
Q Consensus 1158 iwLLVST~S----------dd~t~~Dlra~~~~gH~n~~wRLALl~K~siI~Gs~ldpra~afs~SG~-~gfaGT-~DGl 1225 (1329)
.-|+|...- +....+|.+..+ +++ .|-+|. .|-..++++.|+ +++.-. .++.
T Consensus 260 ~~lyV~~~~~~~~thk~~~~~V~ViD~~t~k---------vi~-----~i~vG~--~~~~iavS~Dgkp~lyvtn~~s~~ 323 (352)
T TIGR02658 260 DRIYLLADQRAKWTHKTASRFLFVVDAKTGK---------RLR-----KIELGH--EIDSINVSQDAKPLLYALSTGDKT 323 (352)
T ss_pred CEEEEEecCCccccccCCCCEEEEEECCCCe---------EEE-----EEeCCC--ceeeEEECCCCCeEEEEeCCCCCc
Confidence 677774321 233335544333 222 233455 566789999999 777555 5789
Q ss_pred EEEEEccccceeeeee
Q 000725 1226 VYAWELSSGNKLGILH 1241 (1329)
Q Consensus 1226 VYmWDLstG~kL~tL~ 1241 (1329)
|.+-|+.+++.+.++.
T Consensus 324 VsViD~~t~k~i~~i~ 339 (352)
T TIGR02658 324 LYIFDAETGKELSSVN 339 (352)
T ss_pred EEEEECcCCeEEeeec
Confidence 9999999999999873
No 250
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.24 E-value=0.042 Score=55.72 Aligned_cols=99 Identities=8% Similarity=-0.045 Sum_probs=67.5
Q ss_pred CCCcEEEEEecCcceeeeEEEec---ccceeEEEEecCCeEEEecCCCeEEEEeccCcceEEEeeeeecCCCCcccceeE
Q 000725 988 DENAVKIVKVKPGYVSVVAKLKT---DDCVQCILVCEPKHLIAVGESGKLHLWEMNSSWSAQVEECIIPINDCIYPCIVE 1064 (1329)
Q Consensus 988 eDNtVKIv~V~~G~vsll~kL~~---h~sV~cIlVcDpnhLVSaSdDGkL~IWDM~SgWsm~tee~Vi~~n~~v~p~I~e 1064 (1329)
++++|..||+.+|. .+-+..- .....+..+-+..+|+.++.++.|+.||..+|-..-...+ +.....+.
T Consensus 1 ~~g~l~~~d~~tG~--~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~---~~~~~~~~--- 72 (238)
T PF13360_consen 1 DDGTLSALDPRTGK--ELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL---PGPISGAP--- 72 (238)
T ss_dssp -TSEEEEEETTTTE--EEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEEC---SSCGGSGE---
T ss_pred CCCEEEEEECCCCC--EEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec---ccccccee---
Confidence 47889999999999 5555532 3444444555888888889999999999999866555551 11112221
Q ss_pred EEecCCCCCeeEecCCCccEEEEEccccceeeee
Q 000725 1065 MKRIPKCAPLVVGHNGFGEFGIWDISKRVLVSRF 1098 (1329)
Q Consensus 1065 lKrFpkss~lIVTgSGDgtf~LWDIskg~llqsF 1098 (1329)
.. .+..|+-+..++.+..+|.++|+.+-++
T Consensus 73 ---~~-~~~~v~v~~~~~~l~~~d~~tG~~~W~~ 102 (238)
T PF13360_consen 73 ---VV-DGGRVYVGTSDGSLYALDAKTGKVLWSI 102 (238)
T ss_dssp ---EE-ETTEEEEEETTSEEEEEETTTSCEEEEE
T ss_pred ---ee-cccccccccceeeeEecccCCcceeeee
Confidence 11 2445555557779999999999997764
No 251
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=97.24 E-value=0.012 Score=70.63 Aligned_cols=234 Identities=12% Similarity=0.063 Sum_probs=154.0
Q ss_pred cceeeecCCCcEEEEecCccCccccCCCccccccccccccCCCCcEEEEEecCcceeeeEEEecc---cceeEEEEe-cC
Q 000725 947 RSCALFTPDGQYLVLLDSMKTPYCREGRSDCLCSTCTSHRLDENAVKIVKVKPGYVSVVAKLKTD---DCVQCILVC-EP 1022 (1329)
Q Consensus 947 rsglqFTPDGQ~LvLlgsik~p~CR~~~~dC~Cs~C~~s~seDNtVKIv~V~~G~vsll~kL~~h---~sV~cIlVc-Dp 1022 (1329)
-+-+..|||||||+-.|..|- -||+|+++- +--||+-| +-|.=+.+. |-
T Consensus 54 st~ik~s~DGqY~lAtG~YKP-----------------------~ikvydlan----LSLKFERhlDae~V~feiLsDD~ 106 (703)
T KOG2321|consen 54 STRIKVSPDGQYLLATGTYKP-----------------------QIKVYDLAN----LSLKFERHLDAEVVDFEILSDDY 106 (703)
T ss_pred cceeEecCCCcEEEEecccCC-----------------------ceEEEEccc----ceeeeeecccccceeEEEeccch
Confidence 456889999999997776664 399999987 34578888 344444444 77
Q ss_pred CeEEEecCCCeEEEEeccC---cceEEEe------------eeee----------cCCCC-------cccceeEEEecCC
Q 000725 1023 KHLIAVGESGKLHLWEMNS---SWSAQVE------------ECII----------PINDC-------IYPCIVEMKRIPK 1070 (1329)
Q Consensus 1023 nhLVSaSdDGkL~IWDM~S---gWsm~te------------e~Vi----------~~n~~-------v~p~I~elKrFpk 1070 (1329)
..+|==-.||.|-+--+-- +..|++. -|++ +.-++ .+++++.+ -+++
T Consensus 107 SK~v~L~~DR~IefHak~G~hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v-~in~ 185 (703)
T KOG2321|consen 107 SKSVFLQNDRTIEFHAKYGRHYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVV-SINE 185 (703)
T ss_pred hhheEeecCceeeehhhcCeeeeeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceee-eecC
Confidence 7777777788776544100 0111111 1111 11122 33455555 8899
Q ss_pred CCCeeEecCCCccEEEEEccccceeeeeccCcc-----------ceeE--ecccc----ccccccCcceEECcchhhhcc
Q 000725 1071 CAPLVVGHNGFGEFGIWDISKRVLVSRFSAARA-----------SIYQ--FFPIN----LFSWQRNGSVSMDASLELTNT 1133 (1329)
Q Consensus 1071 ss~lIVTgSGDgtf~LWDIskg~llqsF~ahs~-----------sV~s--fsP~~----s~S~d~~v~tfd~~s~d~~le 1133 (1329)
+-+||+.|.-||.+-.||-..++.+.++.+.+. +|.+ |..++ .+.-.|.+-+||++.-.-.+
T Consensus 186 ~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~- 264 (703)
T KOG2321|consen 186 EHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLL- 264 (703)
T ss_pred ccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCcee-
Confidence 999999999999999999999999999887766 2555 66655 56667778888877655543
Q ss_pred ccccccccCCCceeecCCCCccceEEEEeeccCccchhhcccccccCCCCcceeEEEeeeccceecCCCCCCCceeeecC
Q 000725 1134 ATTSLFSKHSEKSSFCPSVGEDSAIWLLVSTISDSDAQHNCMSRDCQKNPVRFWRLALLVKNRVILGSPLDPRASAIGAS 1213 (1329)
Q Consensus 1134 atv~~fSgdvn~VsF~P~sGeD~AiwLLVST~Sdd~t~~Dlra~~~~gH~n~~wRLALl~K~siI~Gs~ldpra~afs~S 1213 (1329)
...|..+-.+.+..|.+..+. =-+||+..-..++||--... -+|..++. -|-+-.|+-+.
T Consensus 265 ~kdh~~e~pi~~l~~~~~~~q----~~v~S~Dk~~~kiWd~~~Gk---------~~asiEpt-------~~lND~C~~p~ 324 (703)
T KOG2321|consen 265 VKDHGYELPIKKLDWQDTDQQ----NKVVSMDKRILKIWDECTGK---------PMASIEPT-------SDLNDFCFVPG 324 (703)
T ss_pred ecccCCccceeeecccccCCC----ceEEecchHHhhhcccccCC---------ceeecccc-------CCcCceeeecC
Confidence 224445557777888874222 34778888888889865322 22322221 23355899999
Q ss_pred CCeEEeecCCCeEEEE
Q 000725 1214 SGLGIIGTNDGLVYAW 1229 (1329)
Q Consensus 1214 G~~gfaGT~DGlVYmW 1229 (1329)
++.+|.+-++..+..+
T Consensus 325 sGm~f~Ane~~~m~~y 340 (703)
T KOG2321|consen 325 SGMFFTANESSKMHTY 340 (703)
T ss_pred CceEEEecCCCcceeE
Confidence 9999999888776543
No 252
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=97.13 E-value=0.00067 Score=79.45 Aligned_cols=181 Identities=19% Similarity=0.258 Sum_probs=122.9
Q ss_pred ecCCCCCeeEecCCCccEEEEEccccceeeeeccCccceeE--ecccc---ccccccCcceEECcchhhhcccccccccc
Q 000725 1067 RIPKCAPLVVGHNGFGEFGIWDISKRVLVSRFSAARASIYQ--FFPIN---LFSWQRNGSVSMDASLELTNTATTSLFSK 1141 (1329)
Q Consensus 1067 rFpkss~lIVTgSGDgtf~LWDIskg~llqsF~ahs~sV~s--fsP~~---s~S~d~~v~tfd~~s~d~~leatv~~fSg 1141 (1329)
.+.+++..++-|+-.|-++..|..+++|+-.|..-. .|.. |.=.+ +-..-.-+.+||....|++.....-
T Consensus 136 ~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~E-tv~Dv~~LHneq~~AVAQK~y~yvYD~~GtElHClk~~~---- 210 (545)
T KOG1272|consen 136 DYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVME-TVRDVTFLHNEQFFAVAQKKYVYVYDNNGTELHCLKRHI---- 210 (545)
T ss_pred eecCCccEEEecCCccceeeeecccceeeeeeehhh-hhhhhhhhcchHHHHhhhhceEEEecCCCcEEeehhhcC----
Confidence 788999999999999999999999999987776221 1111 33333 2233445678888888888211122
Q ss_pred CCCceeecCCCCccceEEEEeeccCccchh--hcccccccCCCCcceeEEEeeeccceecCCCCCCCceeeecCCCeEEe
Q 000725 1142 HSEKSSFCPSVGEDSAIWLLVSTISDSDAQ--HNCMSRDCQKNPVRFWRLALLVKNRVILGSPLDPRASAIGASSGLGII 1219 (1329)
Q Consensus 1142 dvn~VsF~P~sGeD~AiwLLVST~Sdd~t~--~Dlra~~~~gH~n~~wRLALl~K~siI~Gs~ldpra~afs~SG~~gfa 1219 (1329)
.++..-|.| =-+||| +++++..+ .|+..-. -++..+.. .|. -++.+--|--..+=.
T Consensus 211 ~v~rLeFLP------yHfLL~-~~~~~G~L~Y~DVS~Gk----lVa~~~t~--------~G~---~~vm~qNP~NaVih~ 268 (545)
T KOG1272|consen 211 RVARLEFLP------YHFLLV-AASEAGFLKYQDVSTGK----LVASIRTG--------AGR---TDVMKQNPYNAVIHL 268 (545)
T ss_pred chhhhcccc------hhheee-ecccCCceEEEeechhh----hhHHHHcc--------CCc---cchhhcCCccceEEE
Confidence 344488998 345555 45555555 5655211 11111111 010 122333444555667
Q ss_pred ecCCCeEEEEEccccceeeeeecccCceEEEEEecCCCCceEEEecCCCCCCccccCCCCCCCCcEEEeeeC
Q 000725 1220 GTNDGLVYAWELSSGNKLGILHHFKGGTVSCIATDDSGLQALAVAGDGPDGGRRQRDPRHGQNDHVRIWKMD 1291 (1329)
Q Consensus 1220 GT~DGlVYmWDLstG~kL~tL~~Heg~rVSCVA~dps~p~~~AsA~d~~d~~~r~~~~~~s~D~~VRiW~~~ 1291 (1329)
|-..|+|-||-=.+..-|..+.||.+ .|++||++|.+.- ||.+ |.|..|+|||..
T Consensus 269 GhsnGtVSlWSP~skePLvKiLcH~g-~V~siAv~~~G~Y-MaTt---------------G~Dr~~kIWDlR 323 (545)
T KOG1272|consen 269 GHSNGTVSLWSPNSKEPLVKILCHRG-PVSSIAVDRGGRY-MATT---------------GLDRKVKIWDLR 323 (545)
T ss_pred cCCCceEEecCCCCcchHHHHHhcCC-CcceEEECCCCcE-Eeec---------------ccccceeEeeec
Confidence 88899999999999999999999999 8999999988877 8888 788899999875
No 253
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=97.10 E-value=0.0013 Score=79.10 Aligned_cols=189 Identities=11% Similarity=0.096 Sum_probs=131.8
Q ss_pred ceeeecC-CCcEEEEecCccCccccCCCccccccccccccCCCCcEEEEEecCcce-----eeeEEEecc-cceeEEEEe
Q 000725 948 SCALFTP-DGQYLVLLDSMKTPYCREGRSDCLCSTCTSHRLDENAVKIVKVKPGYV-----SVVAKLKTD-DCVQCILVC 1020 (1329)
Q Consensus 948 sglqFTP-DGQ~LvLlgsik~p~CR~~~~dC~Cs~C~~s~seDNtVKIv~V~~G~v-----sll~kL~~h-~sV~cIlVc 1020 (1329)
.-++|.| |-+.|+ .+++|+.||||.+..+-. .+-+.|++| +.+-.+-|-
T Consensus 631 tDl~WdPFD~~rLA------------------------Va~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfH 686 (1012)
T KOG1445|consen 631 TDLHWDPFDDERLA------------------------VATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFH 686 (1012)
T ss_pred eecccCCCChHHee------------------------ecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEec
Confidence 4567766 788898 899999999999887765 355779999 888888887
Q ss_pred --cCCeEEEecCCCeEEEEeccCcceEEEeeeeecCCCCcccceeEEEecCCCCCeeEecCCCccEEEEEccccce-eee
Q 000725 1021 --EPKHLIAVGESGKLHLWEMNSSWSAQVEECIIPINDCIYPCIVEMKRIPKCAPLVVGHNGFGEFGIWDISKRVL-VSR 1097 (1329)
Q Consensus 1021 --DpnhLVSaSdDGkL~IWDM~SgWsm~tee~Vi~~n~~v~p~I~elKrFpkss~lIVTgSGDgtf~LWDIskg~l-lqs 1097 (1329)
..+.|++++-|-+|.|||++++-.-..+- +|.--|+.+ +..+|+++|+|-.-||+++++.=.+|.- ++.
T Consensus 687 PLAadvLa~asyd~Ti~lWDl~~~~~~~~l~-------gHtdqIf~~-AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~E 758 (1012)
T KOG1445|consen 687 PLAADVLAVASYDSTIELWDLANAKLYSRLV-------GHTDQIFGI-AWSPDGRRIATVCKDGTLRVYEPRSREQPVYE 758 (1012)
T ss_pred chhhhHhhhhhccceeeeeehhhhhhhheec-------cCcCceeEE-EECCCCcceeeeecCceEEEeCCCCCCCcccc
Confidence 88899999999999999999876555555 899999999 9999999999999999999999988764 443
Q ss_pred eccCccceeEeccccccccccC--------------cceEECcchhhh-ccccccccccCCCceeecCCCCccceEEEEe
Q 000725 1098 FSAARASIYQFFPINLFSWQRN--------------GSVSMDASLELT-NTATTSLFSKHSEKSSFCPSVGEDSAIWLLV 1162 (1329)
Q Consensus 1098 F~ahs~sV~sfsP~~s~S~d~~--------------v~tfd~~s~d~~-leatv~~fSgdvn~VsF~P~sGeD~AiwLLV 1162 (1329)
=.++-+..=. .+ .+..||. +.+|+.-..+.. +-.-+. |+----+.|.--+|....+|.
T Consensus 759 g~gpvgtRgA--Ri-~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~l----Dvaps~LvP~YD~Ds~~lflt 831 (1012)
T KOG1445|consen 759 GKGPVGTRGA--RI-LWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVL----DVAPSPLVPHYDYDSNVLFLT 831 (1012)
T ss_pred CCCCccCcce--eE-EEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeee----cccCccccccccCCCceEEEe
Confidence 3322221100 00 2222222 222222222211 100011 333344555556788888888
Q ss_pred eccCccchhhccc
Q 000725 1163 STISDSDAQHNCM 1175 (1329)
Q Consensus 1163 ST~Sdd~t~~Dlr 1175 (1329)
+-++....+|.+.
T Consensus 832 GKGD~~v~~yEv~ 844 (1012)
T KOG1445|consen 832 GKGDRFVNMYEVI 844 (1012)
T ss_pred cCCCceEEEEEec
Confidence 8888888887766
No 254
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=97.06 E-value=0.0021 Score=73.45 Aligned_cols=224 Identities=15% Similarity=0.140 Sum_probs=124.0
Q ss_pred eeeEEEecc-cceeEE-EEecCCeEEEecCCCeEEEEe--------------ccCcceEEEee------eeecCCCCccc
Q 000725 1003 SVVAKLKTD-DCVQCI-LVCEPKHLIAVGESGKLHLWE--------------MNSSWSAQVEE------CIIPINDCIYP 1060 (1329)
Q Consensus 1003 sll~kL~~h-~sV~cI-lVcDpnhLVSaSdDGkL~IWD--------------M~SgWsm~tee------~Vi~~n~~v~p 1060 (1329)
.++.+++|| +.|.+. ++.--.-++++++|++++||- |+++=+.+..- +|-.+|+.++-
T Consensus 15 ~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvte 94 (404)
T KOG1409|consen 15 ELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTE 94 (404)
T ss_pred hhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEE
Confidence 578899999 777764 455445688999999999997 44443332221 22233333332
Q ss_pred ceeEEEecCCCCCeeEecCCCccEEEEEccccceeeeeccCccceeEeccccccccccCcceEECcchhhh-cccccccc
Q 000725 1061 CIVEMKRIPKCAPLVVGHNGFGEFGIWDISKRVLVSRFSAARASIYQFFPINLFSWQRNGSVSMDASLELT-NTATTSLF 1139 (1329)
Q Consensus 1061 ~I~elKrFpkss~lIVTgSGDgtf~LWDIskg~llqsF~ahs~sV~sfsP~~s~S~d~~v~tfd~~s~d~~-leatv~~f 1139 (1329)
..+.+ |..|-..+...-+|...|+.+.=+.+ +.|.++.+..+ ..-|-.-+
T Consensus 95 fs~se----------------------dfnkm~~~r~~~~h~~~v~~~if~~~-------~e~V~s~~~dk~~~~hc~e~ 145 (404)
T KOG1409|consen 95 FALSE----------------------DFNKMTFLKDYLAHQARVSAIVFSLT-------HEWVLSTGKDKQFAWHCTES 145 (404)
T ss_pred EEhhh----------------------hhhhcchhhhhhhhhcceeeEEecCC-------ceeEEEeccccceEEEeecc
Confidence 22222 44555667778888888888222222 45666555554 21111111
Q ss_pred ccCCCceeecC-CC--CccceEEEEeeccCccchh---hccc---ccccCCCCcceeEEEeeeccceecCCCCCCCceee
Q 000725 1140 SKHSEKSSFCP-SV--GEDSAIWLLVSTISDSDAQ---HNCM---SRDCQKNPVRFWRLALLVKNRVILGSPLDPRASAI 1210 (1329)
Q Consensus 1140 Sgdvn~VsF~P-~s--GeD~AiwLLVST~Sdd~t~---~Dlr---a~~~~gH~n~~wRLALl~K~siI~Gs~ldpra~af 1210 (1329)
....+.+.|.- .+ -.|+. +-+|+--+.-.+. ..-. --++.+|....+. .+-
T Consensus 146 ~~~lg~Y~~~~~~t~~~~d~~-~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~-------------------l~W 205 (404)
T KOG1409|consen 146 GNRLGGYNFETPASALQFDAL-YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTC-------------------LKW 205 (404)
T ss_pred CCcccceEeeccCCCCceeeE-EEEecccccceEEEEEeecCCceEEEEcCcccceEE-------------------EEE
Confidence 11222222221 00 01111 1121111111111 0000 1234445444444 456
Q ss_pred ecCCCeEEeecCCCeEEEEEccccce-eeeeecccCceEEEEEecCCCCceEEEecCCCCCCccccCCCCCCCCcEEEee
Q 000725 1211 GASSGLGIIGTNDGLVYAWELSSGNK-LGILHHFKGGTVSCIATDDSGLQALAVAGDGPDGGRRQRDPRHGQNDHVRIWK 1289 (1329)
Q Consensus 1211 s~SG~~gfaGT~DGlVYmWDLstG~k-L~tL~~Heg~rVSCVA~dps~p~~~AsA~d~~d~~~r~~~~~~s~D~~VRiW~ 1289 (1329)
.+.-+.+|+|+.|..|-|||+--++- ...|++|.+ .|+.+.+-+.--. +.+| +-||-|-+|+
T Consensus 206 d~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~-kV~~l~~~~~t~~-l~S~---------------~edg~i~~w~ 268 (404)
T KOG1409|consen 206 DPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHND-KVQALSYAQHTRQ-LISC---------------GEDGGIVVWN 268 (404)
T ss_pred cCCCcEEEeccccCceEEEeccCCcceeeeeccchh-hhhhhhhhhhhee-eeec---------------cCCCeEEEEe
Confidence 77789999999999999999975543 456789999 8998887733332 4455 7788899998
Q ss_pred eCC
Q 000725 1290 MDP 1292 (1329)
Q Consensus 1290 ~~~ 1292 (1329)
|+-
T Consensus 269 mn~ 271 (404)
T KOG1409|consen 269 MNV 271 (404)
T ss_pred ccc
Confidence 863
No 255
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.05 E-value=0.065 Score=60.27 Aligned_cols=222 Identities=10% Similarity=0.018 Sum_probs=124.3
Q ss_pred cCCCCcEEEEEecCcceeeeEEEecccceeE-EEEecCCeEEEecCCCeEEEEeccCcceEEEeeeeecC--CCCcccce
Q 000725 986 RLDENAVKIVKVKPGYVSVVAKLKTDDCVQC-ILVCEPKHLIAVGESGKLHLWEMNSSWSAQVEECIIPI--NDCIYPCI 1062 (1329)
Q Consensus 986 ~seDNtVKIv~V~~G~vsll~kL~~h~sV~c-IlVcDpnhLVSaSdDGkL~IWDM~SgWsm~tee~Vi~~--n~~v~p~I 1062 (1329)
++.++.|..+|.++|. ++=+....+.+.+ .++.|. .++.+..+|+|.-.|..+|-..=....-.+. ..+....+
T Consensus 126 ~~~~g~l~ald~~tG~--~~W~~~~~~~~~ssP~v~~~-~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~ 202 (394)
T PRK11138 126 GSEKGQVYALNAEDGE--VAWQTKVAGEALSRPVVSDG-LVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPA 202 (394)
T ss_pred EcCCCEEEEEECCCCC--CcccccCCCceecCCEEECC-EEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCE
Confidence 4467889999999998 5555544433333 344454 4555667899999999988555444321111 11111122
Q ss_pred eEEEecCCCCCeeEecCCCccEEEEEccccceeeeecc--Ccc--------ceeEeccc---c---ccccccCcceEECc
Q 000725 1063 VEMKRIPKCAPLVVGHNGFGEFGIWDISKRVLVSRFSA--ARA--------SIYQFFPI---N---LFSWQRNGSVSMDA 1126 (1329)
Q Consensus 1063 ~elKrFpkss~lIVTgSGDgtf~LWDIskg~llqsF~a--hs~--------sV~sfsP~---~---s~S~d~~v~tfd~~ 1126 (1329)
+. +..|+-++++|.+...|.++|+.+-.+.- +.. .+. -.|. + ..+.++.+.-++..
T Consensus 203 v~-------~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~-~sP~v~~~~vy~~~~~g~l~ald~~ 274 (394)
T PRK11138 203 TA-------FGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVD-TTPVVVGGVVYALAYNGNLVALDLR 274 (394)
T ss_pred EE-------CCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccC-CCcEEECCEEEEEEcCCeEEEEECC
Confidence 11 23455577899999999999998655432 110 000 1221 1 23445555555655
Q ss_pred chhhhccccccccccCCCceeecCCCCccceEEEEeeccCccchhhcccccccCCCCcceeEEEeeeccceecCCCCCCC
Q 000725 1127 SLELTNTATTSLFSKHSEKSSFCPSVGEDSAIWLLVSTISDSDAQHNCMSRDCQKNPVRFWRLALLVKNRVILGSPLDPR 1206 (1329)
Q Consensus 1127 s~d~~leatv~~fSgdvn~VsF~P~sGeD~AiwLLVST~Sdd~t~~Dlra~~~~gH~n~~wRLALl~K~siI~Gs~ldpr 1206 (1329)
+++..-.. .+.. . -.|. - + +-.|++.+.+....+.|...- ...|+-..+. +. .
T Consensus 275 tG~~~W~~---~~~~----~-~~~~-~-~-~~~vy~~~~~g~l~ald~~tG------~~~W~~~~~~------~~----~ 327 (394)
T PRK11138 275 SGQIVWKR---EYGS----V-NDFA-V-D-GGRIYLVDQNDRVYALDTRGG------VELWSQSDLL------HR----L 327 (394)
T ss_pred CCCEEEee---cCCC----c-cCcE-E-E-CCEEEEEcCCCeEEEEECCCC------cEEEcccccC------CC----c
Confidence 55544100 0111 0 0121 0 1 346777777777777776422 2366532111 11 1
Q ss_pred ceeeecCCCeEEeecCCCeEEEEEccccceeeeeecccC
Q 000725 1207 ASAIGASSGLGIIGTNDGLVYAWELSSGNKLGILHHFKG 1245 (1329)
Q Consensus 1207 a~afs~SG~~gfaGT~DGlVYmWDLstG~kL~tL~~Heg 1245 (1329)
...-...+++++.|+.||.||+.|..+|+.+...+-..+
T Consensus 328 ~~sp~v~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~ 366 (394)
T PRK11138 328 LTAPVLYNGYLVVGDSEGYLHWINREDGRFVAQQKVDSS 366 (394)
T ss_pred ccCCEEECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCC
Confidence 112223578899999999999999999999988865433
No 256
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=96.99 E-value=0.0011 Score=80.75 Aligned_cols=216 Identities=13% Similarity=0.141 Sum_probs=132.3
Q ss_pred Eecc-cceeEEEEe--cCCeEEEecCCCeEEEEeccCcceEEEeeeeecCCCCcccceeEEEecCCCCCeeEecCCCccE
Q 000725 1008 LKTD-DCVQCILVC--EPKHLIAVGESGKLHLWEMNSSWSAQVEECIIPINDCIYPCIVEMKRIPKCAPLVVGHNGFGEF 1084 (1329)
Q Consensus 1008 L~~h-~sV~cIlVc--DpnhLVSaSdDGkL~IWDM~SgWsm~tee~Vi~~n~~v~p~I~elKrFpkss~lIVTgSGDgtf 1084 (1329)
|-+| ..|.++.+- -|..|++++-|--+|.|||.|-..- .| .-.+-. .... .| +.+--+..|+.-+.-..+
T Consensus 110 lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p--~y-s~~~w~-s~as--qV-kwnyk~p~vlasshg~~i 182 (1081)
T KOG0309|consen 110 LHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRP--FY-STSSWR-SAAS--QV-KWNYKDPNVLASSHGNDI 182 (1081)
T ss_pred EecCccceeccccCCCCCcceeeccccccceeeeccCCCcc--ee-eeeccc-ccCc--ee-eecccCcchhhhccCCce
Confidence 3455 778888888 7889999999999999999983221 11 110000 0011 13 333334445555666789
Q ss_pred EEEEccccce-eeeeccCccceeE-------eccccccccccCcceEECcchhhh---ccccccccccCCCceeecCCCC
Q 000725 1085 GIWDISKRVL-VSRFSAARASIYQ-------FFPINLFSWQRNGSVSMDASLELT---NTATTSLFSKHSEKSSFCPSVG 1153 (1329)
Q Consensus 1085 ~LWDIskg~l-lqsF~ahs~sV~s-------fsP~~s~S~d~~v~tfd~~s~d~~---leatv~~fSgdvn~VsF~P~sG 1153 (1329)
.+||.++|.. +-+..+|...|++ .+-+.+++-||+++.|+++..-.. +..|+-++=. -+|.| -|
T Consensus 183 ~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~----~r~~P-fg 257 (1081)
T KOG0309|consen 183 FVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWR----GRYLP-FG 257 (1081)
T ss_pred EEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCccee----ccccc-cC
Confidence 9999999987 8888999999988 334458899999999999876655 3566666655 67888 56
Q ss_pred ccceEEEEeeccCccchhhcccccccCCCCcceeEEEeeeccceecCCCCCCCceeeecCCCeEEeecCCCeEEEEEccc
Q 000725 1154 EDSAIWLLVSTISDSDAQHNCMSRDCQKNPVRFWRLALLVKNRVILGSPLDPRASAIGASSGLGIIGTNDGLVYAWELSS 1233 (1329)
Q Consensus 1154 eD~AiwLLVST~Sdd~t~~Dlra~~~~gH~n~~wRLALl~K~siI~Gs~ldpra~afs~SG~~gfaGT~DGlVYmWDLst 1233 (1329)
|. .+|+-.-+.+..-+++.+- .-..|..-+
T Consensus 258 ~g--~~~mp~~G~n~v~~~~c~n------------------------------------------------~d~e~n~~~ 287 (1081)
T KOG0309|consen 258 EG--YCIMPMVGGNMVPQLRCEN------------------------------------------------SDLEWNVFD 287 (1081)
T ss_pred ce--eEeccccCCeeeeeccccc------------------------------------------------hhhhhcccc
Confidence 55 3444333333333333321 112233332
Q ss_pred c-ceeeeeecccCceEEEEEecCCCCceEEEec-CCCCCCccccCCCCCCCCcEEEeeeCCC
Q 000725 1234 G-NKLGILHHFKGGTVSCIATDDSGLQALAVAG-DGPDGGRRQRDPRHGQNDHVRIWKMDPN 1293 (1329)
Q Consensus 1234 G-~kL~tL~~Heg~rVSCVA~dps~p~~~AsA~-d~~d~~~r~~~~~~s~D~~VRiW~~~~~ 1293 (1329)
+ +-++++.||.+ +|.-.--- .++.+.++ |+-|+.|--| |-|+|+|+|-.+..
T Consensus 288 ~~~pVh~F~GH~D-~V~eFlWR---~r~e~~~d~d~rdfQLVTW----SkD~~lrlWpI~~~ 341 (1081)
T KOG0309|consen 288 LNTPVHTFVGHDD-VVLEFLWR---KRKECDGDYDSRDFQLVTW----SKDQTLRLWPIDSQ 341 (1081)
T ss_pred CCcceeeecCcch-HHHHHhhh---hcccccCCCCccceeEEEe----ecCCceEeeeccHH
Confidence 2 45778888888 56433222 22122221 3445555556 67999999988764
No 257
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=96.95 E-value=0.093 Score=59.05 Aligned_cols=231 Identities=12% Similarity=0.055 Sum_probs=124.0
Q ss_pred ecCCeEEEecCCCeEEEEeccCcceEEEeeeeecCCCCcccceeEEEecCCCCCeeEecCCCccEEEEEccccceeeeec
Q 000725 1020 CEPKHLIAVGESGKLHLWEMNSSWSAQVEECIIPINDCIYPCIVEMKRIPKCAPLVVGHNGFGEFGIWDISKRVLVSRFS 1099 (1329)
Q Consensus 1020 cDpnhLVSaSdDGkL~IWDM~SgWsm~tee~Vi~~n~~v~p~I~elKrFpkss~lIVTgSGDgtf~LWDIskg~llqsF~ 1099 (1329)
.+..+|+.++.+|.|+-+|..||...=.... .....++.++. +.+|+-+.+++.+...|.++|+.+=++.
T Consensus 118 v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~---~~~~~ssP~v~-------~~~v~v~~~~g~l~ald~~tG~~~W~~~ 187 (394)
T PRK11138 118 VAGGKVYIGSEKGQVYALNAEDGEVAWQTKV---AGEALSRPVVS-------DGLVLVHTSNGMLQALNESDGAVKWTVN 187 (394)
T ss_pred EECCEEEEEcCCCEEEEEECCCCCCcccccC---CCceecCCEEE-------CCEEEEECCCCEEEEEEccCCCEeeeec
Confidence 3556777778899999999998754443331 00111111111 3456667889999999999999987765
Q ss_pred cCccce--eE-ecccc------ccccccCcceEECcchhhh-cccccccccc-C---CCceeecCCCCccceEEEEeecc
Q 000725 1100 AARASI--YQ-FFPIN------LFSWQRNGSVSMDASLELT-NTATTSLFSK-H---SEKSSFCPSVGEDSAIWLLVSTI 1165 (1329)
Q Consensus 1100 ahs~sV--~s-fsP~~------s~S~d~~v~tfd~~s~d~~-leatv~~fSg-d---vn~VsF~P~sGeD~AiwLLVST~ 1165 (1329)
...... .. -+|.- ..+.++.+..++..+++.. ......+... . ...+..+|.--++ .+++.+.
T Consensus 188 ~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~---~vy~~~~ 264 (394)
T PRK11138 188 LDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGG---VVYALAY 264 (394)
T ss_pred CCCCcccccCCCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECC---EEEEEEc
Confidence 431110 00 12221 2234555556666666655 1100111000 0 0012234421122 3566666
Q ss_pred CccchhhcccccccCCCCcceeEEEeeeccceecCCCCCCCceeeecCCCeEEeecCCCeEEEEEccccceeeeeecccC
Q 000725 1166 SDSDAQHNCMSRDCQKNPVRFWRLALLVKNRVILGSPLDPRASAIGASSGLGIIGTNDGLVYAWELSSGNKLGILHHFKG 1245 (1329)
Q Consensus 1166 Sdd~t~~Dlra~~~~gH~n~~wRLALl~K~siI~Gs~ldpra~afs~SG~~gfaGT~DGlVYmWDLstG~kL~tL~~Heg 1245 (1329)
+....++|...- ...|+.. +|.. ..+...|++++.++.||.||..|..+|+.+=....-.+
T Consensus 265 ~g~l~ald~~tG------~~~W~~~--------~~~~-----~~~~~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~ 325 (394)
T PRK11138 265 NGNLVALDLRSG------QIVWKRE--------YGSV-----NDFAVDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLH 325 (394)
T ss_pred CCeEEEEECCCC------CEEEeec--------CCCc-----cCcEEECCEEEEEcCCCeEEEEECCCCcEEEcccccCC
Confidence 666777776532 3467643 2331 12346789999999999999999999987655433223
Q ss_pred ceEEEEEecCCCCceEEEecCCCCCCccccCCCCCCCCcEEEeeeC
Q 000725 1246 GTVSCIATDDSGLQALAVAGDGPDGGRRQRDPRHGQNDHVRIWKMD 1291 (1329)
Q Consensus 1246 ~rVSCVA~dps~p~~~AsA~d~~d~~~r~~~~~~s~D~~VRiW~~~ 1291 (1329)
...+..++. .+.+.+++ -||.+...++. ++.+ +|..+
T Consensus 326 ~~~~sp~v~---~g~l~v~~--~~G~l~~ld~~---tG~~-~~~~~ 362 (394)
T PRK11138 326 RLLTAPVLY---NGYLVVGD--SEGYLHWINRE---DGRF-VAQQK 362 (394)
T ss_pred CcccCCEEE---CCEEEEEe--CCCEEEEEECC---CCCE-EEEEE
Confidence 123333443 23244442 35566665552 3433 55553
No 258
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.90 E-value=0.025 Score=69.01 Aligned_cols=188 Identities=16% Similarity=0.176 Sum_probs=133.1
Q ss_pred cccceeEEEEe-cCCeEEEecCCCeEEEEeccCcceEEEeeeeecCCCCcccceeEEEecCCCCCeeEecCCCccEEEEE
Q 000725 1010 TDDCVQCILVC-EPKHLIAVGESGKLHLWEMNSSWSAQVEECIIPINDCIYPCIVEMKRIPKCAPLVVGHNGFGEFGIWD 1088 (1329)
Q Consensus 1010 ~h~sV~cIlVc-DpnhLVSaSdDGkL~IWDM~SgWsm~tee~Vi~~n~~v~p~I~elKrFpkss~lIVTgSGDgtf~LWD 1088 (1329)
+..+|+.|++- |+..|+-+. +.+|.|+|.+-|-.++++. +|--.+.+| ++.+++.+.++|+.|+.+-||.
T Consensus 11 ~~hci~d~afkPDGsqL~lAA-g~rlliyD~ndG~llqtLK-------gHKDtVycV-Ays~dGkrFASG~aDK~VI~W~ 81 (1081)
T KOG1538|consen 11 AEHCINDIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQPLK-------GHKDTVYCV-AYAKDGKRFASGSADKSVIIWT 81 (1081)
T ss_pred cccchheeEECCCCceEEEec-CCEEEEEeCCCcccccccc-------cccceEEEE-EEccCCceeccCCCceeEEEec
Confidence 33489999999 999988887 5679999999999999999 999999999 9999999999999999999997
Q ss_pred ccccceeeeeccCccceeE--eccccccccccCcceEECcchhhhccccccccccCCCceeecCCCCccceEEEEeeccC
Q 000725 1089 ISKRVLVSRFSAARASIYQ--FFPINLFSWQRNGSVSMDASLELTNTATTSLFSKHSEKSSFCPSVGEDSAIWLLVSTIS 1166 (1329)
Q Consensus 1089 Iskg~llqsF~ahs~sV~s--fsP~~s~S~d~~v~tfd~~s~d~~leatv~~fSgdvn~VsF~P~sGeD~AiwLLVST~S 1166 (1329)
-.---++. + .|++.|.+ |+|+.- +| -. .+++ |||.| |+..
T Consensus 82 ~klEG~Lk-Y-SH~D~IQCMsFNP~~h-----------------~L-------as----CsLs-----dFglW---S~~q 123 (1081)
T KOG1538|consen 82 SKLEGILK-Y-SHNDAIQCMSFNPITH-----------------QL-------AS----CSLS-----DFGLW---SPEQ 123 (1081)
T ss_pred ccccceee-e-ccCCeeeEeecCchHH-----------------Hh-------hh----cchh-----hcccc---Chhh
Confidence 54333333 3 47777776 999961 01 11 2222 66744 3333
Q ss_pred ccchhhcccccccCCCCcceeEEEeeeccceecCCCCCCCceeeecCCCeEEeecCCCeEEEEEccccceeeeee---cc
Q 000725 1167 DSDAQHNCMSRDCQKNPVRFWRLALLVKNRVILGSPLDPRASAIGASSGLGIIGTNDGLVYAWELSSGNKLGILH---HF 1243 (1329)
Q Consensus 1167 dd~t~~Dlra~~~~gH~n~~wRLALl~K~siI~Gs~ldpra~afs~SG~~gfaGT~DGlVYmWDLstG~kL~tL~---~H 1243 (1329)
.....| +..- |+. .|+-...|.|++.|--||+|-+=. .+|.--..++ |-
T Consensus 124 K~V~K~--kss~---------R~~----------------~CsWtnDGqylalG~~nGTIsiRN-k~gEek~~I~Rpgg~ 175 (1081)
T KOG1538|consen 124 KSVSKH--KSSS---------RII----------------CCSWTNDGQYLALGMFNGTISIRN-KNGEEKVKIERPGGS 175 (1081)
T ss_pred hhHHhh--hhhe---------eEE----------------EeeecCCCcEEEEeccCceEEeec-CCCCcceEEeCCCCC
Confidence 332222 1111 333 278889999999999999999873 3444444444 24
Q ss_pred cCceEEEEEecCCC----CceEEEecCCCCCCcccc
Q 000725 1244 KGGTVSCIATDDSG----LQALAVAGDGPDGGRRQR 1275 (1329)
Q Consensus 1244 eg~rVSCVA~dps~----p~~~AsA~d~~d~~~r~~ 1275 (1329)
+. -|++|+.+|+. .+.||++ +|.-||-.+
T Consensus 176 Ns-piwsi~~~p~sg~G~~di~aV~--DW~qTLSFy 208 (1081)
T KOG1538|consen 176 NS-PIWSICWNPSSGEGRNDILAVA--DWGQTLSFY 208 (1081)
T ss_pred CC-CceEEEecCCCCCCccceEEEE--eccceeEEE
Confidence 44 69999999875 4558888 355555443
No 259
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=96.79 E-value=0.017 Score=69.46 Aligned_cols=289 Identities=15% Similarity=0.220 Sum_probs=172.4
Q ss_pred cccchhhhcchhhhhhcccCccceeeeecccccceeeeeeccCCeEEEEEEeccccccceEEEEEEeeeCCCCCCCCcee
Q 000725 846 QVSSDLKLQKNVECINELAGTFDLMGCYFFPLPILSVLLSTTGDKIYVCVSCGFLVDKKRTLFIYTVDIQEPRVGNPSCV 925 (1329)
Q Consensus 846 q~~s~~~~~~~~~~~n~l~~~~~l~g~y~HpmpVlsv~l~t~~~ei~IcVlCG~L~~~~r~Lf~Yki~i~~~~~~~p~~v 925 (1329)
|.--+++..+.+|++++++ ||-.|--++-.-|-=|| ..-|---.+-+-.=++++++|=-|---.-+|
T Consensus 31 ~lkkd~~~~~rieLiQdfe------------~p~ast~ik~s~DGqY~-lAtG~YKP~ikvydlanLSLKFERhlDae~V 97 (703)
T KOG2321|consen 31 QLKKDVDYRQRIELIQDFE------------MPTASTRIKVSPDGQYL-LATGTYKPQIKVYDLANLSLKFERHLDAEVV 97 (703)
T ss_pred HHhhchHHHHHHHHHHhcC------------CccccceeEecCCCcEE-EEecccCCceEEEEcccceeeeeecccccce
Confidence 4444555555666666653 44444433333333232 2335444444444466777776665444444
Q ss_pred ecccccccccccccccccccccceeeecCCCcEEEEecCccCccccCCCccccc-ccccc-ccCCCCcEEEEEecCccee
Q 000725 926 GHTSVMLPFLKDNFGREIALERSCALFTPDGQYLVLLDSMKTPYCREGRSDCLC-STCTS-HRLDENAVKIVKVKPGYVS 1003 (1329)
Q Consensus 926 g~t~~llp~~~~~~~~~~~~ersglqFTPDGQ~LvLlgsik~p~CR~~~~dC~C-s~C~~-s~seDNtVKIv~V~~G~vs 1003 (1329)
--.+| ++|-+---+..+.-.+.|..-+-+=- .+|+| +.|+--|.= .-|-+ .++...-|-=.++.-|.
T Consensus 98 ~feiL----sDD~SK~v~L~~DR~IefHak~G~hy---~~RIP--~~GRDm~y~~~scDly~~gsg~evYRlNLEqGr-- 166 (703)
T KOG2321|consen 98 DFEIL----SDDYSKSVFLQNDRTIEFHAKYGRHY---RTRIP--KFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGR-- 166 (703)
T ss_pred eEEEe----ccchhhheEeecCceeeehhhcCeee---eeecC--cCCccccccCCCccEEEeecCcceEEEEccccc--
Confidence 33332 23333333344555677754433322 47777 223322211 11211 12223345556778888
Q ss_pred eeEEEecc-cceeEEEEecCCeEEEecC-CCeEEEEeccCcceEEEeeeee--cCCCC--cccceeEEEecCCCCCeeEe
Q 000725 1004 VVAKLKTD-DCVQCILVCEPKHLIAVGE-SGKLHLWEMNSSWSAQVEECII--PINDC--IYPCIVEMKRIPKCAPLVVG 1077 (1329)
Q Consensus 1004 ll~kL~~h-~sV~cIlVcDpnhLVSaSd-DGkL~IWDM~SgWsm~tee~Vi--~~n~~--v~p~I~elKrFpkss~lIVT 1077 (1329)
-|.-|+.. ++|.+|-|+.=++|+++|. ||.+.-||+.+.-++.+.++.- ++..+ -.|.+-.+ .|.+++=.|.-
T Consensus 167 fL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal-~F~d~gL~~aV 245 (703)
T KOG2321|consen 167 FLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTAL-KFRDDGLHVAV 245 (703)
T ss_pred cccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEE-EecCCceeEEe
Confidence 89999999 9999999997777776666 9999999999999999998433 22222 56778888 99999999999
Q ss_pred cCCCccEEEEEccccceeeeeccCccceeEeccccccccccCcceEECcchhhh---c--ccccccccc-----CCCcee
Q 000725 1078 HNGFGEFGIWDISKRVLVSRFSAARASIYQFFPINLFSWQRNGSVSMDASLELT---N--TATTSLFSK-----HSEKSS 1147 (1329)
Q Consensus 1078 gSGDgtf~LWDIskg~llqsF~ahs~sV~sfsP~~s~S~d~~v~tfd~~s~d~~---l--eatv~~fSg-----dvn~Vs 1147 (1329)
|...|.+-|+|+..++.+-. ..|.+. .|+-.+.|+...-.--+-+.|+. + +.|.-++.. +.|-++
T Consensus 246 Gts~G~v~iyDLRa~~pl~~-kdh~~e----~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEpt~~lND~C 320 (703)
T KOG2321|consen 246 GTSTGSVLIYDLRASKPLLV-KDHGYE----LPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIEPTSDLNDFC 320 (703)
T ss_pred eccCCcEEEEEcccCCceee-cccCCc----cceeeecccccCCCceEEecchHHhhhcccccCCceeeccccCCcCcee
Confidence 99999999999999998643 455555 57776677444111112222332 1 222322222 788899
Q ss_pred ecCCCCccceEEEEeeccCccchh
Q 000725 1148 FCPSVGEDSAIWLLVSTISDSDAQ 1171 (1329)
Q Consensus 1148 F~P~sGeD~AiwLLVST~Sdd~t~ 1171 (1329)
|.| +.|+.|+ +.++...
T Consensus 321 ~~p----~sGm~f~---Ane~~~m 337 (703)
T KOG2321|consen 321 FVP----GSGMFFT---ANESSKM 337 (703)
T ss_pred eec----CCceEEE---ecCCCcc
Confidence 999 8787776 4444444
No 260
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=96.77 E-value=0.031 Score=64.73 Aligned_cols=194 Identities=14% Similarity=0.117 Sum_probs=119.2
Q ss_pred cccCCCCcEEEEEecCcceeeeEEEecc--cceeEEEEe-cCCeEEEecCCCeEEEEeccCc----c--eEEEe-eeeec
Q 000725 984 SHRLDENAVKIVKVKPGYVSVVAKLKTD--DCVQCILVC-EPKHLIAVGESGKLHLWEMNSS----W--SAQVE-ECIIP 1053 (1329)
Q Consensus 984 ~s~seDNtVKIv~V~~G~vsll~kL~~h--~sV~cIlVc-DpnhLVSaSdDGkL~IWDM~Sg----W--sm~te-e~Vi~ 1053 (1329)
-....|-+||||+-+. ...++|+.. ..|-|++|= =...-.+++=-+-|-||....+ - +|... -.=++
T Consensus 114 ava~nddvVriy~kss---t~pt~Lks~sQrnvtclawRPlsaselavgCr~gIciW~~s~tln~~r~~~~~s~~~~qvl 190 (445)
T KOG2139|consen 114 AVATNDDVVRIYDKSS---TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAGICIWSDSRTLNANRNIRMMSTHHLQVL 190 (445)
T ss_pred hhhccCcEEEEeccCC---CCCceecchhhcceeEEEeccCCcceeeeeecceeEEEEcCcccccccccccccccchhhe
Confidence 3788999999999887 378888888 899999997 3333555555677899983222 1 22111 12223
Q ss_pred CCCCcccceeEEEecCCCCCeeEecCC-CccEEEEEccccce--eeeeccCccceeEecccc----ccccccCcceE-EC
Q 000725 1054 INDCIYPCIVEMKRIPKCAPLVVGHNG-FGEFGIWDISKRVL--VSRFSAARASIYQFFPIN----LFSWQRNGSVS-MD 1125 (1329)
Q Consensus 1054 ~n~~v~p~I~elKrFpkss~lIVTgSG-Dgtf~LWDIskg~l--lqsF~ahs~sV~sfsP~~----s~S~d~~v~tf-d~ 1125 (1329)
..++| -.|-.+ +.++++..+++.|+ |..|.|||+++|++ +..+...+.+-+-++|++ +.+.|+..++| ..
T Consensus 191 ~~pgh-~pVtsm-qwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~ 268 (445)
T KOG2139|consen 191 QDPGH-NPVTSM-QWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQEN 268 (445)
T ss_pred eCCCC-ceeeEE-EEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhc
Confidence 44555 445556 99999999999995 67899999999999 444555555566699999 55677777777 22
Q ss_pred cchhhhccccccccccCCCceeecCCCCccceEEEEee-ccCccchh--hcccccccCCCCcceeEEEe
Q 000725 1126 ASLELTNTATTSLFSKHSEKSSFCPSVGEDSAIWLLVS-TISDSDAQ--HNCMSRDCQKNPVRFWRLAL 1191 (1329)
Q Consensus 1126 ~s~d~~leatv~~fSgdvn~VsF~P~sGeD~AiwLLVS-T~Sdd~t~--~Dlra~~~~gH~n~~wRLAL 1191 (1329)
.+=-+-+-.+. ++-+-.-..+| + |-.||.+ .++-..+- ||=+-..+.+ +...|+.-+
T Consensus 269 q~wt~erw~lg---sgrvqtacWsp----c-GsfLLf~~sgsp~lysl~f~~~~~~~~~-~~~~k~~ll 328 (445)
T KOG2139|consen 269 QSWTKERWILG---SGRVQTACWSP----C-GSFLLFACSGSPRLYSLTFDGEDSVFLR-PQSIKRVLL 328 (445)
T ss_pred ccceecceecc---CCceeeeeecC----C-CCEEEEEEcCCceEEEEeecCCCccccC-cccceeeee
Confidence 22111110000 11233367888 4 5555543 33333332 3333333333 556666554
No 261
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=96.76 E-value=0.013 Score=65.73 Aligned_cols=138 Identities=11% Similarity=0.046 Sum_probs=94.8
Q ss_pred ccccCCCCcEEEEEecCcceeeeEEEecc-c--ceeEEEEe-cCCeEEEecCCCeEEEEeccCc--ceEEEeeeeecCCC
Q 000725 983 TSHRLDENAVKIVKVKPGYVSVVAKLKTD-D--CVQCILVC-EPKHLIAVGESGKLHLWEMNSS--WSAQVEECIIPIND 1056 (1329)
Q Consensus 983 ~~s~seDNtVKIv~V~~G~vsll~kL~~h-~--sV~cIlVc-DpnhLVSaSdDGkL~IWDM~Sg--Wsm~tee~Vi~~n~ 1056 (1329)
..-++.|.|+|++.+..|. -++.-| . .|....+. ||+.++++|++++|+.+-+.-. ...+ -++++.-+
T Consensus 131 ~~i~sndht~k~~~~~~~s----~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~--~~~a~t~D 204 (344)
T KOG4532|consen 131 LNIASNDHTGKTMVVSGDS----NKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIEN--IYEAPTSD 204 (344)
T ss_pred eeeccCCcceeEEEEecCc----ccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeee--eEecccCC
Confidence 3468999999999999977 344445 3 38889999 9999999999999999986542 1111 14554444
Q ss_pred CcccceeEEEecCCCCCeeEecCCCccEEEEEccccceeee-----eccCccceeE--eccccc------cccccCcceE
Q 000725 1057 CIYPCIVEMKRIPKCAPLVVGHNGFGEFGIWDISKRVLVSR-----FSAARASIYQ--FFPINL------FSWQRNGSVS 1123 (1329)
Q Consensus 1057 ~v~p~I~elKrFpkss~lIVTgSGDgtf~LWDIskg~llqs-----F~ahs~sV~s--fsP~~s------~S~d~~v~tf 1123 (1329)
. -+.. -|+..+.+.+.+.-||+++||||+.-..... =..|.+.|-. |+|-++ .-.++-+++.
T Consensus 205 ~----gF~~-S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~ 279 (344)
T KOG4532|consen 205 H----GFYN-SFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVV 279 (344)
T ss_pred C----ceee-eeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEE
Confidence 2 2333 5677799999999999999999987544322 2346666655 887651 1223445666
Q ss_pred ECcchhhh
Q 000725 1124 MDASLELT 1131 (1329)
Q Consensus 1124 d~~s~d~~ 1131 (1329)
|+++....
T Consensus 280 D~R~~~~~ 287 (344)
T KOG4532|consen 280 DTRNYVNH 287 (344)
T ss_pred EcccCcee
Confidence 66665555
No 262
>PRK01029 tolB translocation protein TolB; Provisional
Probab=96.75 E-value=0.098 Score=60.59 Aligned_cols=226 Identities=10% Similarity=0.001 Sum_probs=118.0
Q ss_pred CcEEEEEecCcceeeeEEEecc-cceeEEEEe-cCCe--E-EEecCCC--eEEEEeccCcceEEEeeeeecCCCCcccce
Q 000725 990 NAVKIVKVKPGYVSVVAKLKTD-DCVQCILVC-EPKH--L-IAVGESG--KLHLWEMNSSWSAQVEECIIPINDCIYPCI 1062 (1329)
Q Consensus 990 NtVKIv~V~~G~vsll~kL~~h-~sV~cIlVc-Dpnh--L-VSaSdDG--kL~IWDM~SgWsm~tee~Vi~~n~~v~p~I 1062 (1329)
..|-|++...+..-. |... .....=.|+ |.++ + ..+-.+| +|.+.++.+|-..+... ..+ ..
T Consensus 165 ~~l~~~d~dG~~~~~---lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~-----~~g---~~ 233 (428)
T PRK01029 165 GELWSVDYDGQNLRP---LTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILA-----LQG---NQ 233 (428)
T ss_pred ceEEEEcCCCCCceE---cccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeec-----CCC---Cc
Confidence 367778887777433 3333 444566788 8876 3 2343444 46666777764433322 111 12
Q ss_pred eEEEecCCCCCeeEe-----cCCCccEEEEEcccc---ceeeeeccCccce--eEecccc---ccc--cccCcceEECcc
Q 000725 1063 VEMKRIPKCAPLVVG-----HNGFGEFGIWDISKR---VLVSRFSAARASI--YQFFPIN---LFS--WQRNGSVSMDAS 1127 (1329)
Q Consensus 1063 ~elKrFpkss~lIVT-----gSGDgtf~LWDIskg---~llqsF~ahs~sV--~sfsP~~---s~S--~d~~v~tfd~~s 1127 (1329)
... +|.+++..|+- |+.+-.+.+||+..+ ...+....+...+ .+|+|++ .+. .+|...+|...-
T Consensus 234 ~~p-~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~ 312 (428)
T PRK01029 234 LMP-TFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQI 312 (428)
T ss_pred cce-EECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEEC
Confidence 234 78888877763 333555666898863 4444444332222 3499998 222 244456665421
Q ss_pred ----hhhhc-cccccccccCCCceeecCCCCccceEEEEeeccCcc---chhhcccccccCCCCcceeEEEeeeccceec
Q 000725 1128 ----LELTN-TATTSLFSKHSEKSSFCPSVGEDSAIWLLVSTISDS---DAQHNCMSRDCQKNPVRFWRLALLVKNRVIL 1199 (1329)
Q Consensus 1128 ----~d~~l-eatv~~fSgdvn~VsF~P~sGeD~AiwLLVST~Sdd---~t~~Dlra~~~~gH~n~~wRLALl~K~siI~ 1199 (1329)
.+.++ .... +......|+| | +.||+..+..+. +..||+...+ .-+ +..
T Consensus 313 ~~~g~~~~~lt~~~----~~~~~p~wSP----D-G~~Laf~~~~~g~~~I~v~dl~~g~-------~~~---Lt~----- 368 (428)
T PRK01029 313 DPEGQSPRLLTKKY----RNSSCPAWSP----D-GKKIAFCSVIKGVRQICVYDLATGR-------DYQ---LTT----- 368 (428)
T ss_pred cccccceEEeccCC----CCccceeECC----C-CCEEEEEEcCCCCcEEEEEECCCCC-------eEE---ccC-----
Confidence 11121 1111 1223478999 7 777776654422 2234443221 111 111
Q ss_pred CCCCCCCceeeecCCCeEEeecC---CCeEEEEEccccceeeeeecccCceEEEEEec
Q 000725 1200 GSPLDPRASAIGASSGLGIIGTN---DGLVYAWELSSGNKLGILHHFKGGTVSCIATD 1254 (1329)
Q Consensus 1200 Gs~ldpra~afs~SG~~gfaGT~---DGlVYmWDLstG~kL~tL~~Heg~rVSCVA~d 1254 (1329)
.+.......++++|++++..+. ++.||+||+.+|+....+. ..+ .+.-.+.+
T Consensus 369 -~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~-~~g-~~~~p~Ws 423 (428)
T PRK01029 369 -SPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVI-GSG-EKRFPSWG 423 (428)
T ss_pred -CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec-CCC-cccCceec
Confidence 1122345678999998764332 4689999998877544333 333 34444444
No 263
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=96.68 E-value=0.16 Score=61.22 Aligned_cols=294 Identities=14% Similarity=0.148 Sum_probs=156.3
Q ss_pred ceeeecCCCcEEEEecCccCccccCCCccccccccccccCCCCcEEEEEecCcceeeeEEEecccceeEEEEe-cCCeEE
Q 000725 948 SCALFTPDGQYLVLLDSMKTPYCREGRSDCLCSTCTSHRLDENAVKIVKVKPGYVSVVAKLKTDDCVQCILVC-EPKHLI 1026 (1329)
Q Consensus 948 sglqFTPDGQ~LvLlgsik~p~CR~~~~dC~Cs~C~~s~seDNtVKIv~V~~G~vsll~kL~~h~sV~cIlVc-DpnhLV 1026 (1329)
....|+++|++.+ .+.+..|+|.+..++. ++.+...- .+-+++++ -.++|-
T Consensus 38 ~v~~~S~~G~lfA-------------------------~~~~~~v~i~~~~~~~--~~lt~~~~-~~~~L~fSP~g~yL~ 89 (566)
T KOG2315|consen 38 NVFAYSNNGRLFA-------------------------YSDNQVVKVFEIATLK--VVLCVELK-KTYDLLFSPKGNYLL 89 (566)
T ss_pred eeEEEcCCCcEEE-------------------------EEcCCeEEEEEccCCc--EEEEeccc-eeeeeeecccccccc
Confidence 3678899999999 4456779999999986 33333333 66777776 555553
Q ss_pred E-----ecCCC-----eEEEEeccCcceEEEeeeee-cCCCCcccceeEEEecCCCCCeeEecCCCccEEEEEccccce-
Q 000725 1027 A-----VGESG-----KLHLWEMNSSWSAQVEECII-PINDCIYPCIVEMKRIPKCAPLVVGHNGFGEFGIWDISKRVL- 1094 (1329)
Q Consensus 1027 S-----aSdDG-----kL~IWDM~SgWsm~tee~Vi-~~n~~v~p~I~elKrFpkss~lIVTgSGDgtf~LWDIskg~l- 1094 (1329)
+ -.+|+ .+.+|++.+ ......|.. +-++ ++. .|..+.+ ++-----.++-+||+..=+.
T Consensus 90 T~e~~~i~~~~~~~~pn~~v~~vet--~~~~s~~q~k~Q~~------W~~-qfs~dEs-l~arlv~nev~f~~~~~f~~~ 159 (566)
T KOG2315|consen 90 TWEPWAIYGPKNASNPNVLVYNVET--GVQRSQIQKKMQNG------WVP-QFSIDES-LAARLVSNEVQFYDLGSFKTI 159 (566)
T ss_pred cccccccccCCCCCCCceeeeeecc--ceehhheehhhhcC------ccc-ccccchh-hhhhhhcceEEEEecCCccce
Confidence 2 23333 366999666 222222222 1111 222 3333222 22222334555555554222
Q ss_pred eeeeccCccceeEecccc-----------ccccccCcceEECcchhhh-ccccccccccCCCceeecCCCCccceEEEEe
Q 000725 1095 VSRFSAARASIYQFFPIN-----------LFSWQRNGSVSMDASLELT-NTATTSLFSKHSEKSSFCPSVGEDSAIWLLV 1162 (1329)
Q Consensus 1095 lqsF~ahs~sV~sfsP~~-----------s~S~d~~v~tfd~~s~d~~-leatv~~fSgdvn~VsF~P~sGeD~AiwLLV 1162 (1329)
...|+..+..-|.|+|-. ...-.+-+++|.+.-...+ ..+.+. |+. .++|.|.= .--..|+.+|+
T Consensus 160 ~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ks-FFk-adkvqm~W-N~~gt~LLvLa 236 (566)
T KOG2315|consen 160 QHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKS-FFK-ADKVQMKW-NKLGTALLVLA 236 (566)
T ss_pred eeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhcc-ccc-cceeEEEe-ccCCceEEEEE
Confidence 444555555555566652 2223444666666611111 122222 222 33343331 22344666666
Q ss_pred eccCccchh----------hc-----cc--ccccCCCCcceeE--------EEeeeccce-ecC--------CCCCCC-c
Q 000725 1163 STISDSDAQ----------HN-----CM--SRDCQKNPVRFWR--------LALLVKNRV-ILG--------SPLDPR-A 1207 (1329)
Q Consensus 1163 ST~Sdd~t~----------~D-----lr--a~~~~gH~n~~wR--------LALl~K~si-I~G--------s~ldpr-a 1207 (1329)
+|.-|---+ ++ .+ +....-=|.-.|. +..||+-.+ ||+ .+=-|| +
T Consensus 237 stdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v~df~egpRN~ 316 (566)
T KOG2315|consen 237 STDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPVFDFPEGPRNT 316 (566)
T ss_pred EEeecCCCccccccceEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCEeEeCCCCCccc
Confidence 665444100 11 11 1100000111111 112222211 121 222344 5
Q ss_pred eeeecCCCeEEeecCC---CeEEEEEccccceeeeeecccCceEEEEEecCCCCceEEEecCCCCCCccccCCCCCCCCc
Q 000725 1208 SAIGASSGLGIIGTND---GLVYAWELSSGNKLGILHHFKGGTVSCIATDDSGLQALAVAGDGPDGGRRQRDPRHGQNDH 1284 (1329)
Q Consensus 1208 ~afs~SG~~gfaGT~D---GlVYmWDLstG~kL~tL~~Heg~rVSCVA~dps~p~~~AsA~d~~d~~~r~~~~~~s~D~~ 1284 (1329)
+-|++.|++++..+.+ |.|-+||+.+-+.++++.+=.- +| .+-+|++.- +.+|+. +||+=-|+.
T Consensus 317 ~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~t-t~--~eW~PdGe~-flTATT---------aPRlrvdNg 383 (566)
T KOG2315|consen 317 AFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANT-TV--FEWSPDGEY-FLTATT---------APRLRVDNG 383 (566)
T ss_pred eEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCCc-eE--EEEcCCCcE-EEEEec---------cccEEecCC
Confidence 6789999998876665 6799999999999999988766 33 478888865 666653 899999999
Q ss_pred EEEeeeCCCcc
Q 000725 1285 VRIWKMDPNLG 1295 (1329)
Q Consensus 1285 VRiW~~~~~~~ 1295 (1329)
||||.....+-
T Consensus 384 ~KiwhytG~~l 394 (566)
T KOG2315|consen 384 IKIWHYTGSLL 394 (566)
T ss_pred eEEEEecCcee
Confidence 99998876543
No 264
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.66 E-value=0.016 Score=69.60 Aligned_cols=312 Identities=14% Similarity=0.156 Sum_probs=168.0
Q ss_pred cceeeecCCCcEEEEecCccCccccCCCccccccccccccCCCCcEEEEEecCcceeeeEEEecccceeEEEEe-cCCeE
Q 000725 947 RSCALFTPDGQYLVLLDSMKTPYCREGRSDCLCSTCTSHRLDENAVKIVKVKPGYVSVVAKLKTDDCVQCILVC-EPKHL 1025 (1329)
Q Consensus 947 rsglqFTPDGQ~LvLlgsik~p~CR~~~~dC~Cs~C~~s~seDNtVKIv~V~~G~vsll~kL~~h~sV~cIlVc-DpnhL 1025 (1329)
.+-++|+|-|-||+ +- -...|-+|.=..= ..+++ ..|+.||=|=++ --+||
T Consensus 213 etyv~wSP~GTYL~------------------------t~-Hk~GI~lWGG~~f--~r~~R-F~Hp~Vq~idfSP~EkYL 264 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLV------------------------TF-HKQGIALWGGESF--DRIQR-FYHPGVQFIDFSPNEKYL 264 (698)
T ss_pred eeeEEecCCceEEE------------------------EE-eccceeeecCccH--HHHHh-ccCCCceeeecCCccceE
Confidence 45699999999999 22 2346788974441 23444 468999999999 77899
Q ss_pred EEec-----------CCCeEEEEeccCcceEEEeeeeecCCCCcccceeEEEecCCCCCeeEecCCCccEEEEEccccce
Q 000725 1026 IAVG-----------ESGKLHLWEMNSSWSAQVEECIIPINDCIYPCIVEMKRIPKCAPLVVGHNGFGEFGIWDISKRVL 1094 (1329)
Q Consensus 1026 VSaS-----------dDGkL~IWDM~SgWsm~tee~Vi~~n~~v~p~I~elKrFpkss~lIVTgSGDgtf~LWDIskg~l 1094 (1329)
||=| +..+|+|||++||-.++.+-.+ ..+.. ++-+-|..-++-.++-=.+ .+|.|++-.+=.+
T Consensus 265 VT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~--~~~~~---~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~l 338 (698)
T KOG2314|consen 265 VTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVI--KSPYL---KWPIFRWSHDDKYFARMTG-NSISIYETPSFML 338 (698)
T ss_pred EEecCCccccCcccCCCceEEEEEccccchhcceecc--CCCcc---ccceEEeccCCceeEEecc-ceEEEEecCceee
Confidence 9865 3478999999999999988721 22211 1222133333333322222 3455555544333
Q ss_pred --eeeeccCccceeEecccc-----------------------ccccccCcceEECcchhhh-------c----c-cccc
Q 000725 1095 --VSRFSAARASIYQFFPIN-----------------------LFSWQRNGSVSMDASLELT-------N----T-ATTS 1137 (1329)
Q Consensus 1095 --lqsF~ahs~sV~sfsP~~-----------------------s~S~d~~v~tfd~~s~d~~-------l----e-atv~ 1137 (1329)
..++.-.+.-=|+++|.+ +.+-=++.++|.+++|.++ | . .++.
T Consensus 339 ld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~ 418 (698)
T KOG2314|consen 339 LDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKS 418 (698)
T ss_pred ecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccc
Confidence 112222222222333333 2233355677777777766 1 0 1111
Q ss_pred ccccCCCceeecCCCCccceEEEEeeccCccchh--hccccccc---CCCCcceeEEEeeeccceec----CCCCC---C
Q 000725 1138 LFSKHSEKSSFCPSVGEDSAIWLLVSTISDSDAQ--HNCMSRDC---QKNPVRFWRLALLVKNRVIL----GSPLD---P 1205 (1329)
Q Consensus 1138 ~fSgdvn~VsF~P~sGeD~AiwLLVST~Sdd~t~--~Dlra~~~---~gH~n~~wRLALl~K~siI~----Gs~ld---p 1205 (1329)
-|-+-.-++-.+-+..+||-.=.+ -+.+..-. |+-.-+.| .||.++ =-+..|.-++.+- =.-|| -
T Consensus 419 ~~~g~f~n~eIfrireKdIpve~v--elke~vi~FaWEP~gdkF~vi~g~~~k-~tvsfY~~e~~~~~~~lVk~~dk~~~ 495 (698)
T KOG2314|consen 419 KVKGQFSNLEIFRIREKDIPVEVV--ELKESVIAFAWEPHGDKFAVISGNTVK-NTVSFYAVETNIKKPSLVKELDKKFA 495 (698)
T ss_pred cccceEeeEEEEEeeccCCCceee--ecchheeeeeeccCCCeEEEEEccccc-cceeEEEeecCCCchhhhhhhccccc
Confidence 111100001111112233221111 11111111 22222222 112111 0122222221000 00112 1
Q ss_pred CceeeecCCCeEEeecC---CCeEEEEEcc--ccceeeeeecccCceEEEEEecCCCCceEEEecCCCCCCccccCCCCC
Q 000725 1206 RASAIGASSGLGIIGTN---DGLVYAWELS--SGNKLGILHHFKGGTVSCIATDDSGLQALAVAGDGPDGGRRQRDPRHG 1280 (1329)
Q Consensus 1206 ra~afs~SG~~gfaGT~---DGlVYmWDLs--tG~kL~tL~~Heg~rVSCVA~dps~p~~~AsA~d~~d~~~r~~~~~~s 1280 (1329)
+.+.++|-|+.++.+.. -|.++..|++ ..+.++.-.|+- -+-|.-||++--++++.+ .| ||.
T Consensus 496 N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~---at~veWDPtGRYvvT~ss--------~w--rhk 562 (698)
T KOG2314|consen 496 NTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFA---ATEVEWDPTGRYVVTSSS--------SW--RHK 562 (698)
T ss_pred ceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccccc---cccceECCCCCEEEEeee--------hh--hhc
Confidence 45789999999988765 5999999999 555555554442 467789999987555553 56 889
Q ss_pred CCCcEEEeeeCCCcceeecCCCCcccceEEE
Q 000725 1281 QNDHVRIWKMDPNLGCVRNSNGDSKFKQFQI 1311 (1329)
Q Consensus 1281 ~D~~VRiW~~~~~~~~~~~~~~~~~~~~~~~ 1311 (1329)
.|.--|||..+.+|-|-.+-. .|+||--
T Consensus 563 ~d~GYri~tfqGrll~~~~i~---~f~qF~W 590 (698)
T KOG2314|consen 563 VDNGYRIFTFQGRLLKEDIID---RFKQFLW 590 (698)
T ss_pred cccceEEEEeecHHHHHHHHH---HHHhhcc
Confidence 999999999999998866543 5888854
No 265
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=96.62 E-value=0.03 Score=63.90 Aligned_cols=157 Identities=14% Similarity=0.201 Sum_probs=115.3
Q ss_pred cccccccccccccccc--ccceeeecCCCcEEEEecCccC---------ccccC----CCccccccccccc--------c
Q 000725 930 VMLPFLKDNFGREIAL--ERSCALFTPDGQYLVLLDSMKT---------PYCRE----GRSDCLCSTCTSH--------R 986 (1329)
Q Consensus 930 ~llp~~~~~~~~~~~~--ersglqFTPDGQ~LvLlgsik~---------p~CR~----~~~dC~Cs~C~~s--------~ 986 (1329)
++|-++++....|+.| +..+|+|.+|---+||=+-|.. -.|-+ ++- +|+.|..+ +
T Consensus 78 iIWDD~k~~~i~el~f~~~I~~V~l~r~riVvvl~~~I~VytF~~n~k~l~~~et~~NPkG--lC~~~~~~~k~~LafPg 155 (346)
T KOG2111|consen 78 IIWDDLKERCIIELSFNSEIKAVKLRRDRIVVVLENKIYVYTFPDNPKLLHVIETRSNPKG--LCSLCPTSNKSLLAFPG 155 (346)
T ss_pred EEEecccCcEEEEEEeccceeeEEEcCCeEEEEecCeEEEEEcCCChhheeeeecccCCCc--eEeecCCCCceEEEcCC
Confidence 5677777777777775 7788888888444444333322 11111 222 67777543 4
Q ss_pred CCCCcEEEEEecCcceeeeEEEecc-cceeEEEEe-cCCeEEEecCCCeE-EEEeccCcceEEEeeeeecCCCCccccee
Q 000725 987 LDENAVKIVKVKPGYVSVVAKLKTD-DCVQCILVC-EPKHLIAVGESGKL-HLWEMNSSWSAQVEECIIPINDCIYPCIV 1063 (1329)
Q Consensus 987 seDNtVKIv~V~~G~vsll~kL~~h-~sV~cIlVc-DpnhLVSaSdDGkL-~IWDM~SgWsm~tee~Vi~~n~~v~p~I~ 1063 (1329)
..-+.|.|++...-..-.-....|| ..+.||... ++..|+|||.-|+| +|||-.+|..+.-+. -+..-.-|.
T Consensus 156 ~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~R-----RG~d~A~iy 230 (346)
T KOG2111|consen 156 FKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELR-----RGVDRADIY 230 (346)
T ss_pred CccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeee-----cCCchheEE
Confidence 5667788888776442223678999 889999999 99999999999997 599999999888776 222556688
Q ss_pred EEEecCCCCCeeEecCCCccEEEEEccccce
Q 000725 1064 EMKRIPKCAPLVVGHNGFGEFGIWDISKRVL 1094 (1329)
Q Consensus 1064 elKrFpkss~lIVTgSGDgtf~LWDIskg~l 1094 (1329)
++ +|++++++++-.|-.||+-|+-+.-...
T Consensus 231 ~i-aFSp~~s~LavsSdKgTlHiF~l~~~~~ 260 (346)
T KOG2111|consen 231 CI-AFSPNSSWLAVSSDKGTLHIFSLRDTEN 260 (346)
T ss_pred EE-EeCCCccEEEEEcCCCeEEEEEeecCCC
Confidence 89 9999999999999999999998876544
No 266
>PRK01029 tolB translocation protein TolB; Provisional
Probab=96.59 E-value=0.051 Score=62.86 Aligned_cols=178 Identities=12% Similarity=0.036 Sum_probs=101.0
Q ss_pred eeeecCCCcEEE--EecCccCccccCCCccccccccccccCCCCcEEEEEecCcceeeeEEEecccceeEEEEe-cCCeE
Q 000725 949 CALFTPDGQYLV--LLDSMKTPYCREGRSDCLCSTCTSHRLDENAVKIVKVKPGYVSVVAKLKTDDCVQCILVC-EPKHL 1025 (1329)
Q Consensus 949 glqFTPDGQ~Lv--Llgsik~p~CR~~~~dC~Cs~C~~s~seDNtVKIv~V~~G~vsll~kL~~h~sV~cIlVc-DpnhL 1025 (1329)
.-+|+|||+.++ ++ |.+. ....|-+.++.+|....++.+.+.. ....|+ |.++|
T Consensus 189 sP~wSPDG~~~~~~y~-S~~~--------------------g~~~I~~~~l~~g~~~~lt~~~g~~--~~p~wSPDG~~L 245 (428)
T PRK01029 189 TPTWMHIGSGFPYLYV-SYKL--------------------GVPKIFLGSLENPAGKKILALQGNQ--LMPTFSPRKKLL 245 (428)
T ss_pred cceEccCCCceEEEEE-EccC--------------------CCceEEEEECCCCCceEeecCCCCc--cceEECCCCCEE
Confidence 458999998643 23 2221 2346888899999877777776653 347888 99998
Q ss_pred EEecC-CC----eEEEEeccCc---ceEEEeeeeecCCCCcccceeEEEecCCCCCeeEe-cCCCccEEEEEcc--c-cc
Q 000725 1026 IAVGE-SG----KLHLWEMNSS---WSAQVEECIIPINDCIYPCIVEMKRIPKCAPLVVG-HNGFGEFGIWDIS--K-RV 1093 (1329)
Q Consensus 1026 VSaSd-DG----kL~IWDM~Sg---Wsm~tee~Vi~~n~~v~p~I~elKrFpkss~lIVT-gSGDgtf~LWDIs--k-g~ 1093 (1329)
+-+++ +| -+++||+.++ -..+... .......+. .|.+++..|+- .+.+|...||.+. . +.
T Consensus 246 af~s~~~g~~di~~~~~~~~~g~~g~~~~lt~-------~~~~~~~~p-~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~ 317 (428)
T PRK01029 246 AFISDRYGNPDLFIQSFSLETGAIGKPRRLLN-------EAFGTQGNP-SFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQ 317 (428)
T ss_pred EEEECCCCCcceeEEEeecccCCCCcceEeec-------CCCCCcCCe-EECCCCCEEEEEECCCCCceEEEEECccccc
Confidence 87663 33 3444676653 1111111 111122344 78888886664 4456766777543 1 22
Q ss_pred eeeeeccCcccee--Eecccc---ccccc----cCcceEECcchhhhccccccccccCCCceeecCCCCccceEEEEeec
Q 000725 1094 LVSRFSAARASIY--QFFPIN---LFSWQ----RNGSVSMDASLELTNTATTSLFSKHSEKSSFCPSVGEDSAIWLLVST 1164 (1329)
Q Consensus 1094 llqsF~ahs~sV~--sfsP~~---s~S~d----~~v~tfd~~s~d~~leatv~~fSgdvn~VsF~P~sGeD~AiwLLVST 1164 (1329)
....+..+...+. .++|++ .+.-+ ..+.+|+..+++.+..... . +......|+| | +.+|+.++
T Consensus 318 ~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~-~--~~~~~p~wSp----D-G~~L~f~~ 389 (428)
T PRK01029 318 SPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTS-P--ENKESPSWAI----D-SLHLVYSA 389 (428)
T ss_pred ceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCC-C--CCccceEECC----C-CCEEEEEE
Confidence 2333433333332 399998 22211 2466777777766532111 1 1334588999 7 78887665
Q ss_pred c
Q 000725 1165 I 1165 (1329)
Q Consensus 1165 ~ 1165 (1329)
.
T Consensus 390 ~ 390 (428)
T PRK01029 390 G 390 (428)
T ss_pred C
Confidence 4
No 267
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.59 E-value=0.0069 Score=72.26 Aligned_cols=120 Identities=13% Similarity=0.152 Sum_probs=80.0
Q ss_pred ccCCCCcEEEEEecCccee-----eeEEEecc-cceeEEEEe-cCCeEEEecCCCeEEEEeccCcceEE-EeeeeecCCC
Q 000725 985 HRLDENAVKIVKVKPGYVS-----VVAKLKTD-DCVQCILVC-EPKHLIAVGESGKLHLWEMNSSWSAQ-VEECIIPIND 1056 (1329)
Q Consensus 985 s~seDNtVKIv~V~~G~vs-----ll~kL~~h-~sV~cIlVc-DpnhLVSaSdDGkL~IWDM~SgWsm~-tee~Vi~~n~ 1056 (1329)
+.|.|+|||+|+++..-.+ .--|+++| ..|++|-+- |.|++||+ ||-||+||-=-|.... .+. +| -.
T Consensus 752 SASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHlWDPFigr~Laq~~d--ap-k~ 826 (1034)
T KOG4190|consen 752 SASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHLWDPFIGRLLAQMED--AP-KE 826 (1034)
T ss_pred eccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCcceeecccccchhHhhhc--Cc-cc
Confidence 7899999999998864433 45688999 999999999 88888876 8999999932222211 111 11 11
Q ss_pred CcccceeEEEecCC-CCC-eeEecCCCccEEEEEccccce---eeee--ccCccceeE--ecccc
Q 000725 1057 CIYPCIVEMKRIPK-CAP-LVVGHNGFGEFGIWDISKRVL---VSRF--SAARASIYQ--FFPIN 1112 (1329)
Q Consensus 1057 ~v~p~I~elKrFpk-ss~-lIVTgSGDgtf~LWDIskg~l---lqsF--~ahs~sV~s--fsP~~ 1112 (1329)
+-+..|++| ++ ..+ +|++|+...|++++|-+++.- +... .+|.+.+-+ +.|.|
T Consensus 827 ~a~~~ikcl---~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~G 888 (1034)
T KOG4190|consen 827 GAGGNIKCL---ENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKG 888 (1034)
T ss_pred CCCceeEec---ccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCc
Confidence 233344444 54 334 455669999999999998876 3344 445555555 56665
No 268
>PRK04792 tolB translocation protein TolB; Provisional
Probab=96.58 E-value=0.23 Score=57.77 Aligned_cols=175 Identities=15% Similarity=0.082 Sum_probs=92.3
Q ss_pred ceeEEEecCCCCCeeEecCC---CccEEEEEccccce--eeeeccCccceeEecccc---cc--ccccC--cceEECcch
Q 000725 1061 CIVEMKRIPKCAPLVVGHNG---FGEFGIWDISKRVL--VSRFSAARASIYQFFPIN---LF--SWQRN--GSVSMDASL 1128 (1329)
Q Consensus 1061 ~I~elKrFpkss~lIVTgSG---Dgtf~LWDIskg~l--lqsF~ahs~sV~sfsP~~---s~--S~d~~--v~tfd~~s~ 1128 (1329)
.++.. +|.++++.|+-.+. ...+.+||+.+|+. +..+.++.. -..|+|++ .+ +-++. +.+++..++
T Consensus 219 ~~~~p-~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~-~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg 296 (448)
T PRK04792 219 PLMSP-AWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGING-APRFSPDGKKLALVLSKDGQPEIYVVDIATK 296 (448)
T ss_pred cccCc-eECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcC-CeeECCCCCEEEEEEeCCCCeEEEEEECCCC
Confidence 34455 78888888776533 34688999998875 444544322 23599998 22 23444 333444444
Q ss_pred hhhccccccccccCCCceeecCCCCccceEEEEeeccC-ccchhhcccccccCCCCcceeEEEeeeccceecCCCCCCCc
Q 000725 1129 ELTNTATTSLFSKHSEKSSFCPSVGEDSAIWLLVSTIS-DSDAQHNCMSRDCQKNPVRFWRLALLVKNRVILGSPLDPRA 1207 (1329)
Q Consensus 1129 d~~leatv~~fSgdvn~VsF~P~sGeD~AiwLLVST~S-dd~t~~Dlra~~~~gH~n~~wRLALl~K~siI~Gs~ldpra 1207 (1329)
+.++. +.. ........|+| | +.||+.++.. ....+|-+.++. ...-+|. +.... ...
T Consensus 297 ~~~~l-t~~--~~~~~~p~wSp----D-G~~I~f~s~~~g~~~Iy~~dl~~-----g~~~~Lt--------~~g~~-~~~ 354 (448)
T PRK04792 297 ALTRI-TRH--RAIDTEPSWHP----D-GKSLIFTSERGGKPQIYRVNLAS-----GKVSRLT--------FEGEQ-NLG 354 (448)
T ss_pred CeEEC-ccC--CCCccceEECC----C-CCEEEEEECCCCCceEEEEECCC-----CCEEEEe--------cCCCC-CcC
Confidence 43321 111 11233478999 6 6777665432 122222222111 1111211 11111 233
Q ss_pred eeeecCCCeEEeecC-CC--eEEEEEccccceeeeee-cccCceEEEEEecCCCCceEEEe
Q 000725 1208 SAIGASSGLGIIGTN-DG--LVYAWELSSGNKLGILH-HFKGGTVSCIATDDSGLQALAVA 1264 (1329)
Q Consensus 1208 ~afs~SG~~gfaGT~-DG--lVYmWDLstG~kL~tL~-~Heg~rVSCVA~dps~p~~~AsA 1264 (1329)
.+++++|++++..+. ++ .||++|+.+|+.- .|. ...+ ...+.+|++.. ++.+
T Consensus 355 ~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~~~d---~~ps~spdG~~-I~~~ 410 (448)
T PRK04792 355 GSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ-VLTSTRLD---ESPSVAPNGTM-VIYS 410 (448)
T ss_pred eeECCCCCEEEEEEecCCceEEEEEECCCCCeE-EccCCCCC---CCceECCCCCE-EEEE
Confidence 588999999866544 33 6888999888643 333 2222 23467777765 4444
No 269
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=96.56 E-value=0.0051 Score=71.09 Aligned_cols=84 Identities=18% Similarity=0.394 Sum_probs=69.6
Q ss_pred eeecccccccccccccccccccccceeeecCCCcEEEEecCccCccccCCCccccccccccccCCCCcEEEEEecCccee
Q 000725 924 CVGHTSVMLPFLKDNFGREIALERSCALFTPDGQYLVLLDSMKTPYCREGRSDCLCSTCTSHRLDENAVKIVKVKPGYVS 1003 (1329)
Q Consensus 924 ~vg~t~~llp~~~~~~~~~~~~ersglqFTPDGQ~LvLlgsik~p~CR~~~~dC~Cs~C~~s~seDNtVKIv~V~~G~vs 1003 (1329)
.+||-++++ -|+|+||+|+|+ .+-.|-.|||=....-+
T Consensus 147 ~lGhvSml~----------------dVavS~D~~~Ii------------------------taDRDEkIRvs~ypa~f-- 184 (390)
T KOG3914|consen 147 ILGHVSMLL----------------DVAVSPDDQFII------------------------TADRDEKIRVSRYPATF-- 184 (390)
T ss_pred hhhhhhhhh----------------eeeecCCCCEEE------------------------EecCCceEEEEecCccc--
Confidence 588888765 589999999999 77788889987644433
Q ss_pred eeEEE-ecc-cceeEEEEecCCeEEEecCCCeEEEEeccCcceEEEee
Q 000725 1004 VVAKL-KTD-DCVQCILVCEPKHLIAVGESGKLHLWEMNSSWSAQVEE 1049 (1329)
Q Consensus 1004 ll~kL-~~h-~sV~cIlVcDpnhLVSaSdDGkL~IWDM~SgWsm~tee 1049 (1329)
.+.+| -|| +=|+.|.+.+.++|.|+|.|++|++||..+|-...|..
T Consensus 185 ~IesfclGH~eFVS~isl~~~~~LlS~sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 185 VIESFCLGHKEFVSTISLTDNYLLLSGSGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred chhhhccccHhheeeeeeccCceeeecCCCCcEEEEecccCCcccccc
Confidence 45554 579 99999999999999999999999999999988776665
No 270
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=96.33 E-value=0.039 Score=66.21 Aligned_cols=225 Identities=16% Similarity=0.166 Sum_probs=146.0
Q ss_pred cceeEEEEecCCeEEEecCCCeEEEEeccCcceEEEeeeeecCCCCcccceeEEE----ecCCCCCeeEecCCCccEEEE
Q 000725 1012 DCVQCILVCEPKHLIAVGESGKLHLWEMNSSWSAQVEECIIPINDCIYPCIVEMK----RIPKCAPLVVGHNGFGEFGIW 1087 (1329)
Q Consensus 1012 ~sV~cIlVcDpnhLVSaSdDGkL~IWDM~SgWsm~tee~Vi~~n~~v~p~I~elK----rFpkss~lIVTgSGDgtf~LW 1087 (1329)
.-|.||-+....-+..+++|..+++|--.+.-+...+- .|+.. .|.++-++ .=-+.+...+-++.||.|-|-
T Consensus 15 e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~--~p~df--~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il 90 (737)
T KOG1524|consen 15 EKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAK--LPDDF--VPTDMHLGGRSSGGGKGSDTLLICSNDGRFVIL 90 (737)
T ss_pred eeEEeecccccceEEEeccCceEEEeecccchhhhhhh--CCccc--CCccccccccccCCCCCcceEEEEcCCceEEEe
Confidence 44568888888888899999999998744433332222 12222 22222231 111233455667889999886
Q ss_pred EccccceeeeeccCccceeE--ecccc----ccccccCcceEECcchhhh-cccccccccc-----CCCceeecCCCCcc
Q 000725 1088 DISKRVLVSRFSAARASIYQ--FFPIN----LFSWQRNGSVSMDASLELT-NTATTSLFSK-----HSEKSSFCPSVGED 1155 (1329)
Q Consensus 1088 DIskg~llqsF~ahs~sV~s--fsP~~----s~S~d~~v~tfd~~s~d~~-leatv~~fSg-----dvn~VsF~P~sGeD 1155 (1329)
. ..|.--.+++||.+.|.+ .+|+| +.-=||.|++|+-+.--+. +.+-..++-. +.++|-|.. |+
T Consensus 91 ~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~--g~- 166 (737)
T KOG1524|consen 91 N-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCARWAPNSNSIVFCQ--GG- 166 (737)
T ss_pred c-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchHHHHHhhcCceeEEEEECCCCCceEEec--CC-
Confidence 4 234446789999999999 99999 4456899999987665554 3333344444 444455554 11
Q ss_pred ceEEEEeeccCccchhhcccccccCCCCcceeEEEeeeccceecCCCCCCCceeeecCCCeEEeecCCCeEEEEEccccc
Q 000725 1156 SAIWLLVSTISDSDAQHNCMSRDCQKNPVRFWRLALLVKNRVILGSPLDPRASAIGASSGLGIIGTNDGLVYAWELSSGN 1235 (1329)
Q Consensus 1156 ~AiwLLVST~Sdd~t~~Dlra~~~~gH~n~~wRLALl~K~siI~Gs~ldpra~afs~SG~~gfaGT~DGlVYmWDLstG~ 1235 (1329)
....--+.++- ..=+|| +-+.||+- ++-++-..++++|.+|-..++||- -|+
T Consensus 167 ------------h~~IKpL~~n~----k~i~Wk----AHDGiiL~-------~~W~~~s~lI~sgGED~kfKvWD~-~G~ 218 (737)
T KOG1524|consen 167 ------------HISIKPLAANS----KIIRWR----AHDGLVLS-------LSWSTQSNIIASGGEDFRFKIWDA-QGA 218 (737)
T ss_pred ------------eEEEeeccccc----ceeEEe----ccCcEEEE-------eecCccccceeecCCceeEEeecc-cCc
Confidence 11222222332 334566 45667764 467778899999999999999995 688
Q ss_pred eeeeeecccCceEEEEEecCCCCceEEEecCCCCCCccccCCC
Q 000725 1236 KLGILHHFKGGTVSCIATDDSGLQALAVAGDGPDGGRRQRDPR 1278 (1329)
Q Consensus 1236 kL~tL~~Heg~rVSCVA~dps~p~~~AsA~d~~d~~~r~~~~~ 1278 (1329)
-|-+-..|+- .+++||..|.+ + .|+++ -.|+|.=.||
T Consensus 219 ~Lf~S~~~ey-~ITSva~npd~-~-~~v~S---~nt~R~~~p~ 255 (737)
T KOG1524|consen 219 NLFTSAAEEY-AITSVAFNPEK-D-YLLWS---YNTARFSSPR 255 (737)
T ss_pred ccccCChhcc-ceeeeeecccc-c-eeeee---eeeeeecCCC
Confidence 8888899999 89999999873 3 77774 3566655554
No 271
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.31 E-value=0.0055 Score=73.04 Aligned_cols=218 Identities=11% Similarity=0.109 Sum_probs=124.9
Q ss_pred eEEEecc-cceeEEEEe-cCCeEEEecCCCeEEEEeccCcc-eEEEeeeeecCCCCcccceeEEEecCCCCCeeEecCCC
Q 000725 1005 VAKLKTD-DCVQCILVC-EPKHLIAVGESGKLHLWEMNSSW-SAQVEECIIPINDCIYPCIVEMKRIPKCAPLVVGHNGF 1081 (1329)
Q Consensus 1005 l~kL~~h-~sV~cIlVc-DpnhLVSaSdDGkL~IWDM~SgW-sm~tee~Vi~~n~~v~p~I~elKrFpkss~lIVTgSGD 1081 (1329)
+..|.|| ..|+.|.-- .-|.+||+|.|.++++|-+.+-- -+.+.- ---...-|...|..+ -|..+-..|+++ |
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsa-CQfTY~aHkk~i~~i-gfL~~lr~i~Sc--D 803 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSA-CQFTYQAHKKPIHDI-GFLADLRSIASC--D 803 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccce-eeeEhhhccCcccce-eeeeccceeeec--c
Confidence 5678999 999999877 66889999999999999865421 111111 000011266667777 788877788765 7
Q ss_pred ccEEEEEccccceeeeec-c----CccceeEeccccccccccCcceEECcchhhhccccccccccCCCceeecCCCCccc
Q 000725 1082 GEFGIWDISKRVLVSRFS-A----ARASIYQFFPINLFSWQRNGSVSMDASLELTNTATTSLFSKHSEKSSFCPSVGEDS 1156 (1329)
Q Consensus 1082 gtf~LWDIskg~llqsF~-a----hs~sV~sfsP~~s~S~d~~v~tfd~~s~d~~leatv~~fSgdvn~VsF~P~sGeD~ 1156 (1329)
|-+-+||-=-|.+++... + .+.-|.++ .++++.+
T Consensus 804 ~giHlWDPFigr~Laq~~dapk~~a~~~ikcl-----------------~nv~~~i------------------------ 842 (1034)
T KOG4190|consen 804 GGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCL-----------------ENVDRHI------------------------ 842 (1034)
T ss_pred CcceeecccccchhHhhhcCcccCCCceeEec-----------------ccCcchh------------------------
Confidence 889999988888866332 2 22222221 1111110
Q ss_pred eEEEEeeccCccchhhcccccccCCCCcceeEEEeeeccceecCCCCCCCceeeecCCCeEEeecCCCeEEEEEccccce
Q 000725 1157 AIWLLVSTISDSDAQHNCMSRDCQKNPVRFWRLALLVKNRVILGSPLDPRASAIGASSGLGIIGTNDGLVYAWELSSGNK 1236 (1329)
Q Consensus 1157 AiwLLVST~Sdd~t~~Dlra~~~~gH~n~~wRLALl~K~siI~Gs~ldpra~afs~SG~~gfaGT~DGlVYmWDLstG~k 1236 (1329)
-+..-|+-.+.+++|-|.-+| ..-|++.-- -|-.---|+.++.++|+.+++|-..|+|-+-|.-+|+.
T Consensus 843 --liAgcsaeSTVKl~DaRsce~----~~E~kVcna------~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~v 910 (1034)
T KOG4190|consen 843 --LIAGCSAESTVKLFDARSCEW----TCELKVCNA------PGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKV 910 (1034)
T ss_pred --eeeeccchhhheeeecccccc----eeeEEeccC------CCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCce
Confidence 000013333444455543331 122333200 00000026788999999999999999999999999998
Q ss_pred eeeeecccCceEEEEEecCCCCceEEEecCCCCCCccc-cCCCCCCCCcEEE
Q 000725 1237 LGILHHFKGGTVSCIATDDSGLQALAVAGDGPDGGRRQ-RDPRHGQNDHVRI 1287 (1329)
Q Consensus 1237 L~tL~~Heg~rVSCVA~dps~p~~~AsA~d~~d~~~r~-~~~~~s~D~~VRi 1287 (1329)
+-.+.--+- -.--+|.- ++ -|.|..--|.++-| |- ..|+-..+
T Consensus 911 INswrpmec-dllqlaap---sd-q~L~~saldHslaVnWh---aldgimh~ 954 (1034)
T KOG4190|consen 911 INSWRPMEC-DLLQLAAP---SD-QALAQSALDHSLAVNWH---ALDGIMHL 954 (1034)
T ss_pred eccCCcccc-hhhhhcCc---hh-HHHHhhcccceeEeeeh---hcCCeeee
Confidence 887654433 12222221 22 34454455666666 52 34444443
No 272
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=96.24 E-value=0.012 Score=69.83 Aligned_cols=165 Identities=18% Similarity=0.207 Sum_probs=109.6
Q ss_pred CcccceeEEEecCCCCCeeEecCCCccEEEEEccccceeeee-ccCccceeE--eccccccccccCcceEECcchhhhcc
Q 000725 1057 CIYPCIVEMKRIPKCAPLVVGHNGFGEFGIWDISKRVLVSRF-SAARASIYQ--FFPINLFSWQRNGSVSMDASLELTNT 1133 (1329)
Q Consensus 1057 ~v~p~I~elKrFpkss~lIVTgSGDgtf~LWDIskg~llqsF-~ahs~sV~s--fsP~~s~S~d~~v~tfd~~s~d~~le 1133 (1329)
.|-.|+..| .|+..+..+++||-|-.+-+||-.+++...+| .+|...||| |.|-.. .++-...+-|.+
T Consensus 140 ~H~GcVntV-~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~------d~ti~~~s~dgq-- 210 (559)
T KOG1334|consen 140 KHKGCVNTV-HFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSG------DRTIVTSSRDGQ-- 210 (559)
T ss_pred CCCCcccee-eecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCC------CcCceeccccCc--
Confidence 377788888 99999999999999999999999999997777 589999999 998762 122222222222
Q ss_pred ccccccccCCCceeecCCCCccceEEEEeeccCccchhhcccccccCCCCcceeEEEeeeccceecCCCCCCCceeeecC
Q 000725 1134 ATTSLFSKHSEKSSFCPSVGEDSAIWLLVSTISDSDAQHNCMSRDCQKNPVRFWRLALLVKNRVILGSPLDPRASAIGAS 1213 (1329)
Q Consensus 1134 atv~~fSgdvn~VsF~P~sGeD~AiwLLVST~Sdd~t~~Dlra~~~~gH~n~~wRLALl~K~siI~Gs~ldpra~afs~S 1213 (1329)
+=+|....+.++-+ .+.--.|.+..+.||+ +|- +
T Consensus 211 --------------------------vr~s~i~~t~~~e~--t~rl~~h~g~vhklav------------~p~------s 244 (559)
T KOG1334|consen 211 --------------------------VRVSEILETGYVEN--TKRLAPHEGPVHKLAV------------EPD------S 244 (559)
T ss_pred --------------------------eeeeeeccccceec--ceecccccCccceeee------------cCC------C
Confidence 11112222222211 1122347788888875 221 1
Q ss_pred CCeEEeecCCCeEEEEEccccceeeee---ecccC--ceEEEEEecCCCCceEEEecCCCCCCccccCCC
Q 000725 1214 SGLGIIGTNDGLVYAWELSSGNKLGIL---HHFKG--GTVSCIATDDSGLQALAVAGDGPDGGRRQRDPR 1278 (1329)
Q Consensus 1214 G~~gfaGT~DGlVYmWDLstG~kL~tL---~~Heg--~rVSCVA~dps~p~~~AsA~d~~d~~~r~~~~~ 1278 (1329)
-.-+.+.++|+.|.=.||.++.--..+ +++++ ++...||++|.-+.-.|+++ -|--.||++-|
T Consensus 245 p~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG--~dqf~RvYD~R 312 (559)
T KOG1334|consen 245 PKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGG--SDQFARVYDQR 312 (559)
T ss_pred CCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCC--hhhhhhhhccc
Confidence 223556789999999999988654444 67777 56789999999987688882 23444444443
No 273
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.06 E-value=0.029 Score=65.20 Aligned_cols=128 Identities=13% Similarity=0.093 Sum_probs=106.5
Q ss_pred cccccccccccceeeecCC--CcEEEEecCccCccccCCCccccccccccccCCCCcEEEEEecCcceeeeEEEecc-cc
Q 000725 937 DNFGREIALERSCALFTPD--GQYLVLLDSMKTPYCREGRSDCLCSTCTSHRLDENAVKIVKVKPGYVSVVAKLKTD-DC 1013 (1329)
Q Consensus 937 ~~~~~~~~~ersglqFTPD--GQ~LvLlgsik~p~CR~~~~dC~Cs~C~~s~seDNtVKIv~V~~G~vsll~kL~~h-~s 1013 (1329)
++.+-+++.=.++++|.|+ -+.+| .|..-..||+||..+|.. ++.+|.-- ..
T Consensus 195 D~L~LrVPvW~tdi~Fl~g~~~~~fa------------------------t~T~~hqvR~YDt~~qRR-PV~~fd~~E~~ 249 (412)
T KOG3881|consen 195 DRLGLRVPVWITDIRFLEGSPNYKFA------------------------TITRYHQVRLYDTRHQRR-PVAQFDFLENP 249 (412)
T ss_pred ccccceeeeeeccceecCCCCCceEE------------------------EEecceeEEEecCcccCc-ceeEeccccCc
Confidence 4555566666789999988 78888 677778899999999985 44444443 88
Q ss_pred eeEEEEe-cCCeEEEecCCCeEEEEeccCcceEEEeeeeecCCCCcccceeEEEecCCCCCeeEecCCCccEEEEEcccc
Q 000725 1014 VQCILVC-EPKHLIAVGESGKLHLWEMNSSWSAQVEECIIPINDCIYPCIVEMKRIPKCAPLVVGHNGFGEFGIWDISKR 1092 (1329)
Q Consensus 1014 V~cIlVc-DpnhLVSaSdDGkL~IWDM~SgWsm~tee~Vi~~n~~v~p~I~elKrFpkss~lIVTgSGDgtf~LWDIskg 1092 (1329)
|.|+... +.+.|+++---|.|...|.+++=...+.+ ++...+|-.+ -..+..+++++|+-|-.+||.|+.++
T Consensus 250 is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~------kg~tGsirsi-h~hp~~~~las~GLDRyvRIhD~ktr 322 (412)
T KOG3881|consen 250 ISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGL------KGITGSIRSI-HCHPTHPVLASCGLDRYVRIHDIKTR 322 (412)
T ss_pred ceeeeecCCCcEEEEecccchhheecccCceeecccc------CCccCCcceE-EEcCCCceEEeeccceeEEEeecccc
Confidence 9999888 99999999999999999999999988866 4777778887 56666889999999999999999998
Q ss_pred ceee
Q 000725 1093 VLVS 1096 (1329)
Q Consensus 1093 ~llq 1096 (1329)
+++.
T Consensus 323 kll~ 326 (412)
T KOG3881|consen 323 KLLH 326 (412)
T ss_pred hhhh
Confidence 8854
No 274
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=96.01 E-value=2.5 Score=44.44 Aligned_cols=211 Identities=14% Similarity=0.132 Sum_probs=111.7
Q ss_pred ccCCCCcEEEEEecCcceeeeEEEecccceeEEEEe-cCCeEEEecCCCeEEEEeccCcceEEEeeeeecCCCC-cccce
Q 000725 985 HRLDENAVKIVKVKPGYVSVVAKLKTDDCVQCILVC-EPKHLIAVGESGKLHLWEMNSSWSAQVEECIIPINDC-IYPCI 1062 (1329)
Q Consensus 985 s~seDNtVKIv~V~~G~vsll~kL~~h~sV~cIlVc-DpnhLVSaSdDGkL~IWDM~SgWsm~tee~Vi~~n~~-v~p~I 1062 (1329)
+--..+.|.-|+.+++...+ +...+ ...+++- +...|+.+..++ +.++|..++-....... ..+. .....
T Consensus 17 ~D~~~~~i~~~~~~~~~~~~---~~~~~-~~G~~~~~~~g~l~v~~~~~-~~~~d~~~g~~~~~~~~---~~~~~~~~~~ 88 (246)
T PF08450_consen 17 VDIPGGRIYRVDPDTGEVEV---IDLPG-PNGMAFDRPDGRLYVADSGG-IAVVDPDTGKVTVLADL---PDGGVPFNRP 88 (246)
T ss_dssp EETTTTEEEEEETTTTEEEE---EESSS-EEEEEEECTTSEEEEEETTC-EEEEETTTTEEEEEEEE---ETTCSCTEEE
T ss_pred EEcCCCEEEEEECCCCeEEE---EecCC-CceEEEEccCCEEEEEEcCc-eEEEecCCCcEEEEeec---cCCCcccCCC
Confidence 34456788889999987433 22223 5555555 345555555444 44559998744333331 1122 33344
Q ss_pred eEEEecCCCCCeeEecCCCccEEEEEccccceeeeeccCccceeEeccccccccccCcceEECcchhhhccccccccccC
Q 000725 1063 VEMKRIPKCAPLVVGHNGFGEFGIWDISKRVLVSRFSAARASIYQFFPINLFSWQRNGSVSMDASLELTNTATTSLFSKH 1142 (1329)
Q Consensus 1063 ~elKrFpkss~lIVTgSGDgtf~LWDIskg~llqsF~ahs~sV~sfsP~~s~S~d~~v~tfd~~s~d~~leatv~~fSgd 1142 (1329)
.++ .+-+++.+.+|-.+.....-.+. +.|+.+.|.+. +... ..... -
T Consensus 89 ND~-~vd~~G~ly~t~~~~~~~~~~~~-------------g~v~~~~~~~~------~~~~---------~~~~~----~ 135 (246)
T PF08450_consen 89 NDV-AVDPDGNLYVTDSGGGGASGIDP-------------GSVYRIDPDGK------VTVV---------ADGLG----F 135 (246)
T ss_dssp EEE-EE-TTS-EEEEEECCBCTTCGGS-------------EEEEEEETTSE------EEEE---------EEEES----S
T ss_pred ceE-EEcCCCCEEEEecCCCccccccc-------------cceEEECCCCe------EEEE---------ecCcc----c
Confidence 555 66777777777665432111110 33344444421 0000 00011 1
Q ss_pred CCceeecCCCCccceEEEEe-eccCccchhhcccccccCCCCcceeEEEeeeccceecC-CCCC--CCceeeecCCCeEE
Q 000725 1143 SEKSSFCPSVGEDSAIWLLV-STISDSDAQHNCMSRDCQKNPVRFWRLALLVKNRVILG-SPLD--PRASAIGASSGLGI 1218 (1329)
Q Consensus 1143 vn~VsF~P~sGeD~AiwLLV-ST~Sdd~t~~Dlra~~~~gH~n~~wRLALl~K~siI~G-s~ld--pra~afs~SG~~gf 1218 (1329)
.|.+.|.| | +.+|+| -|....+..||+...... +....++.. .... |.-.++...|++.+
T Consensus 136 pNGi~~s~----d-g~~lyv~ds~~~~i~~~~~~~~~~~-----------~~~~~~~~~~~~~~g~pDG~~vD~~G~l~v 199 (246)
T PF08450_consen 136 PNGIAFSP----D-GKTLYVADSFNGRIWRFDLDADGGE-----------LSNRRVFIDFPGGPGYPDGLAVDSDGNLWV 199 (246)
T ss_dssp EEEEEEET----T-SSEEEEEETTTTEEEEEEEETTTCC-----------EEEEEEEEE-SSSSCEEEEEEEBTTS-EEE
T ss_pred ccceEECC----c-chheeecccccceeEEEeccccccc-----------eeeeeeEEEcCCCCcCCCcceEcCCCCEEE
Confidence 23377888 5 555554 233333333444333200 111122211 1122 77899999999999
Q ss_pred eecCCCeEEEEEccccceeeeeecccCceEEEEEec
Q 000725 1219 IGTNDGLVYAWELSSGNKLGILHHFKGGTVSCIATD 1254 (1329)
Q Consensus 1219 aGT~DGlVYmWDLstG~kL~tL~~Heg~rVSCVA~d 1254 (1329)
+....+.|+++|-. |+.+..+.-=.. +++++++-
T Consensus 200 a~~~~~~I~~~~p~-G~~~~~i~~p~~-~~t~~~fg 233 (246)
T PF08450_consen 200 ADWGGGRIVVFDPD-GKLLREIELPVP-RPTNCAFG 233 (246)
T ss_dssp EEETTTEEEEEETT-SCEEEEEE-SSS-SEEEEEEE
T ss_pred EEcCCCEEEEECCC-ccEEEEEcCCCC-CEEEEEEE
Confidence 99999999999988 999998886644 79999984
No 275
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=95.97 E-value=0.1 Score=62.95 Aligned_cols=157 Identities=15% Similarity=0.198 Sum_probs=111.9
Q ss_pred eeeecCCCcEEEEecCccCccccCCCccccccccccccCCCCcEEEEEecCcceeeeEEEecccceeEEEEe-cCCeEE-
Q 000725 949 CALFTPDGQYLVLLDSMKTPYCREGRSDCLCSTCTSHRLDENAVKIVKVKPGYVSVVAKLKTDDCVQCILVC-EPKHLI- 1026 (1329)
Q Consensus 949 glqFTPDGQ~LvLlgsik~p~CR~~~~dC~Cs~C~~s~seDNtVKIv~V~~G~vsll~kL~~h~sV~cIlVc-DpnhLV- 1026 (1329)
-+.|++-|+-|++|-+.-+-.- +. +-..+.+|-+...+ |. +++..|...+.|+||.|. +.+-.+
T Consensus 222 qm~WN~~gt~LLvLastdVDkt--n~----------SYYGEq~Lyll~t~-g~-s~~V~L~k~GPVhdv~W~~s~~EF~V 287 (566)
T KOG2315|consen 222 QMKWNKLGTALLVLASTDVDKT--NA----------SYYGEQTLYLLATQ-GE-SVSVPLLKEGPVHDVTWSPSGREFAV 287 (566)
T ss_pred EEEeccCCceEEEEEEEeecCC--Cc----------cccccceEEEEEec-Cc-eEEEecCCCCCceEEEECCCCCEEEE
Confidence 4456899999998877654410 11 45677899999998 43 799999999999999999 665443
Q ss_pred -EecCCCeEEEEeccCcceEEEeeeeecCCCCcccceeEEEecCCCCCeeEecCC---CccEEEEEccccceeeeeccCc
Q 000725 1027 -AVGESGKLHLWEMNSSWSAQVEECIIPINDCIYPCIVEMKRIPKCAPLVVGHNG---FGEFGIWDISKRVLVSRFSAAR 1102 (1329)
Q Consensus 1027 -SaSdDGkL~IWDM~SgWsm~tee~Vi~~n~~v~p~I~elKrFpkss~lIVTgSG---Dgtf~LWDIskg~llqsF~ahs 1102 (1329)
-+=+=-++-|.|+.-.=++..-+ -|-| .+ .|++.+++|+=+++ -|.+-+||+..+.+|.+|.+..
T Consensus 288 vyGfMPAkvtifnlr~~~v~df~e--gpRN--------~~-~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~ 356 (566)
T KOG2315|consen 288 VYGFMPAKVTIFNLRGKPVFDFPE--GPRN--------TA-FFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAAN 356 (566)
T ss_pred EEecccceEEEEcCCCCEeEeCCC--CCcc--------ce-EECCCCCEEEEeecCCCCCceEEEeccchhhccccccCC
Confidence 33344455555544322221111 0222 24 89999999998665 4899999999999999999999
Q ss_pred cceeEecccc------c----cccccCcceEECcchhh
Q 000725 1103 ASIYQFFPIN------L----FSWQRNGSVSMDASLEL 1130 (1329)
Q Consensus 1103 ~sV~sfsP~~------s----~S~d~~v~tfd~~s~d~ 1130 (1329)
.+++.++|+| + +-+|.-+++|++..--.
T Consensus 357 tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~l 394 (566)
T KOG2315|consen 357 TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSLL 394 (566)
T ss_pred ceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCcee
Confidence 9999999999 2 34677788888765433
No 276
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=95.85 E-value=0.024 Score=38.63 Aligned_cols=35 Identities=23% Similarity=0.510 Sum_probs=31.1
Q ss_pred eeEEEecc-cceeEEEEe-cCCeEEEecCCCeEEEEe
Q 000725 1004 VVAKLKTD-DCVQCILVC-EPKHLIAVGESGKLHLWE 1038 (1329)
Q Consensus 1004 ll~kL~~h-~sV~cIlVc-DpnhLVSaSdDGkL~IWD 1038 (1329)
++..+.+| ..|.|+.+. +.+.+++++.||.+.+||
T Consensus 4 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 4 LLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 56777888 889999999 678999999999999997
No 277
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=95.82 E-value=0.023 Score=65.54 Aligned_cols=182 Identities=15% Similarity=0.258 Sum_probs=110.3
Q ss_pred cccccceEEEEEEeeeCCCCC--------CCCceeecccccccccc-----------cccccccccccceeeecCCCcEE
Q 000725 899 FLVDKKRTLFIYTVDIQEPRV--------GNPSCVGHTSVMLPFLK-----------DNFGREIALERSCALFTPDGQYL 959 (1329)
Q Consensus 899 ~L~~~~r~Lf~Yki~i~~~~~--------~~p~~vg~t~~llp~~~-----------~~~~~~~~~ersglqFTPDGQ~L 959 (1329)
+|...++|+.+|||.-++-.. +.|. +-|+|-+|.+. +.|.---+.-..++-++.|++.+
T Consensus 102 LlstNdktiKlWKi~er~~k~~~~~~~~~~~~~--~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~ 179 (433)
T KOG1354|consen 102 LLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPG--TITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETF 179 (433)
T ss_pred EEecCCcceeeeeeeccccccccccccccCCCC--ccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceE
Confidence 455678888899888766444 3333 22344455443 44444445677899999999998
Q ss_pred EEecCccCccccCCCccccccccccccCCCCcEEEEEecCcceeeeEEEecc---cceeEEEEecCCeEEEecCCCeEEE
Q 000725 960 VLLDSMKTPYCREGRSDCLCSTCTSHRLDENAVKIVKVKPGYVSVVAKLKTD---DCVQCILVCEPKHLIAVGESGKLHL 1036 (1329)
Q Consensus 960 vLlgsik~p~CR~~~~dC~Cs~C~~s~seDNtVKIv~V~~G~vsll~kL~~h---~sV~cIlVcDpnhLVSaSdDGkL~I 1036 (1329)
+--.-.|.---- .-=-|....||||+.-..|-|+...+- ..-+ -|.+|=+|-.|+|++
T Consensus 180 lSADdLRINLWn-------------lei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~------cn~f~YSSSKGtIrL 240 (433)
T KOG1354|consen 180 LSADDLRINLWN-------------LEIIDQSFNIVDIKPANMEELTEVITSAEFHPHH------CNVFVYSSSKGTIRL 240 (433)
T ss_pred eeccceeeeecc-------------ccccCCceeEEEccccCHHHHHHHHhhhccCHhH------ccEEEEecCCCcEEE
Confidence 811111111000 001244566777776655333332221 1222 356677777999999
Q ss_pred EeccCcceE-----EEeeeeecCCCC----cccceeEEEecCCCCCeeEecCCCccEEEEEc-cccceeeeeccCcc
Q 000725 1037 WEMNSSWSA-----QVEECIIPINDC----IYPCIVEMKRIPKCAPLVVGHNGFGEFGIWDI-SKRVLVSRFSAARA 1103 (1329)
Q Consensus 1037 WDM~SgWsm-----~tee~Vi~~n~~----v~p~I~elKrFpkss~lIVTgSGDgtf~LWDI-skg~llqsF~ahs~ 1103 (1329)
=||...=.. --|+..-|.+.. +-.+|-++ +|..++.+|++.++ -|++|||+ .-...+.++.-|..
T Consensus 241 cDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDv-KFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~ 315 (433)
T KOG1354|consen 241 CDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDV-KFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEY 315 (433)
T ss_pred eechhhhhhcchhhhhccccCCcchhhHHHHhhhhhce-EEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHh
Confidence 999843221 122244466665 44555667 99999999999986 79999999 66666777776643
No 278
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=95.81 E-value=0.018 Score=75.77 Aligned_cols=139 Identities=20% Similarity=0.224 Sum_probs=99.9
Q ss_pred ccCCCCcEEEEEecCcceeeeEEEecc--cceeEEEEe-cCCeEEEecCCCeEEEEecc----CcceEE-----Eeeeee
Q 000725 985 HRLDENAVKIVKVKPGYVSVVAKLKTD--DCVQCILVC-EPKHLIAVGESGKLHLWEMN----SSWSAQ-----VEECII 1052 (1329)
Q Consensus 985 s~seDNtVKIv~V~~G~vsll~kL~~h--~sV~cIlVc-DpnhLVSaSdDGkL~IWDM~----SgWsm~-----tee~Vi 1052 (1329)
++++|+.||+|---.|- .+..+.+- ..|+-+.+| .+|....+-.||.|-+|-.+ ++|..- -+.||.
T Consensus 2225 tgs~dgsv~~~~w~~~~--~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~pk~~~s~qchnk~~~Df~Fi~ 2302 (2439)
T KOG1064|consen 2225 TGSQDGSVRMFEWGHGQ--QVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQASPKPYTSWQCHNKALSDFRFIG 2302 (2439)
T ss_pred ecCCCceEEEEeccCCC--eEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccCCcceeccccCCccccceeeee
Confidence 89999999999987776 66666655 788888888 88888888889999999854 223210 111333
Q ss_pred ---------cCCC------------------CcccceeEEEecCCCCCeeEecCCCccEEEEEccccceeeeeccCccce
Q 000725 1053 ---------PIND------------------CIYPCIVEMKRIPKCAPLVVGHNGFGEFGIWDISKRVLVSRFSAARASI 1105 (1329)
Q Consensus 1053 ---------~~n~------------------~v~p~I~elKrFpkss~lIVTgSGDgtf~LWDIskg~llqsF~ahs~sV 1105 (1329)
++|+ ||-...-++ .+-+..++++||+-+|+++||||..|+++++|.+ ..
T Consensus 2303 s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l-~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~---~~ 2378 (2439)
T KOG1064|consen 2303 SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVL-AYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA---LD 2378 (2439)
T ss_pred hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEE-EEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh---hh
Confidence 2322 333334444 6666699999999999999999999999999987 11
Q ss_pred eE-eccccccccccCcceEECcchhhh
Q 000725 1106 YQ-FFPINLFSWQRNGSVSMDASLELT 1131 (1329)
Q Consensus 1106 ~s-fsP~~s~S~d~~v~tfd~~s~d~~ 1131 (1329)
.. ++= +++--|.|++|+....-+.
T Consensus 2379 ~~~~f~--~~ss~g~ikIw~~s~~~ll 2403 (2439)
T KOG1064|consen 2379 TREYFV--TGSSEGNIKIWRLSEFGLL 2403 (2439)
T ss_pred hhheee--ccCcccceEEEEccccchh
Confidence 22 221 3456788999988776443
No 279
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=95.70 E-value=0.038 Score=69.33 Aligned_cols=193 Identities=18% Similarity=0.093 Sum_probs=138.2
Q ss_pred eeEEEecc--cceeEEEEecCCeEEEecCCCeEEEEeccCcceEEEeeeeecCCCCcccceeEEEecCCCCCeeEecCCC
Q 000725 1004 VVAKLKTD--DCVQCILVCEPKHLIAVGESGKLHLWEMNSSWSAQVEECIIPINDCIYPCIVEMKRIPKCAPLVVGHNGF 1081 (1329)
Q Consensus 1004 ll~kL~~h--~sV~cIlVcDpnhLVSaSdDGkL~IWDM~SgWsm~tee~Vi~~n~~v~p~I~elKrFpkss~lIVTgSGD 1081 (1329)
++.+++-. ..|..-+-|+|..++-+|--.+|+..|+++.=-.++.. .-.+. ++.+-.....+-.|+--
T Consensus 127 ~~~~~~~~s~~~M~~~~~~~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~-------v~a~~---v~imR~Nnr~lf~G~t~ 196 (1118)
T KOG1275|consen 127 PVFDFTCPSMTKMASSLHMGPSTLIMGGLQEKLIHIDLNTEKETRTTN-------VSASG---VTIMRYNNRNLFCGDTR 196 (1118)
T ss_pred eeecccCCCHHHHHHHhccCCcceeecchhhheeeeecccceeeeeee-------ccCCc---eEEEEecCcEEEeeccc
Confidence 55555544 66667777799999999999999999999988888777 21222 22344456788999999
Q ss_pred ccEEEEEccccceeeeeccCccceeEecccc-------------ccccccCcceEECcchhhhccccccccccCCCceee
Q 000725 1082 GEFGIWDISKRVLVSRFSAARASIYQFFPIN-------------LFSWQRNGSVSMDASLELTNTATTSLFSKHSEKSSF 1148 (1329)
Q Consensus 1082 gtf~LWDIskg~llqsF~ahs~sV~sfsP~~-------------s~S~d~~v~tfd~~s~d~~leatv~~fSgdvn~VsF 1148 (1329)
|++.|=|..+-+.+.+|.||+++|-.|-=-| ....|.=+++||++.-... .--.|.-+-.-++|
T Consensus 197 G~V~LrD~~s~~~iht~~aHs~siSDfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral---~PI~~~~~P~flrf 273 (1118)
T KOG1275|consen 197 GTVFLRDPNSFETIHTFDAHSGSISDFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRAL---SPIQFPYGPQFLRF 273 (1118)
T ss_pred ceEEeecCCcCceeeeeeccccceeeeeccCCeEEEeecccccccccccchhhhhhhhhhhcc---CCcccccCchhhhh
Confidence 9999999999999999999999986643222 3345667788877644333 12224445555889
Q ss_pred cCCCCccceEEEEeeccC------ccchhhcccccccCCCCcceeEEEeeeccceecCCCCCCCceeeecCCCeEEeecC
Q 000725 1149 CPSVGEDSAIWLLVSTIS------DSDAQHNCMSRDCQKNPVRFWRLALLVKNRVILGSPLDPRASAIGASSGLGIIGTN 1222 (1329)
Q Consensus 1149 ~P~sGeD~AiwLLVST~S------dd~t~~Dlra~~~~gH~n~~wRLALl~K~siI~Gs~ldpra~afs~SG~~gfaGT~ 1222 (1329)
+|+ ..-.+-|-+-+ |+.++-+-.+..+..|++..+-.+ -+++.+|.-++.|-.
T Consensus 274 ~Ps----l~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~-----------------fDiSsn~~alafgd~ 332 (1118)
T KOG1275|consen 274 HPS----LTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISA-----------------FDISSNGDALAFGDH 332 (1118)
T ss_pred ccc----ccceEEEEecccceeeccccccCCCccceeEEccCCCccee-----------------EEecCCCceEEEecc
Confidence 993 23333333322 233334555788888898888655 699999999999999
Q ss_pred CCeEEEEE
Q 000725 1223 DGLVYAWE 1230 (1329)
Q Consensus 1223 DGlVYmWD 1230 (1329)
+|.|+||-
T Consensus 333 ~g~v~~wa 340 (1118)
T KOG1275|consen 333 EGHVNLWA 340 (1118)
T ss_pred cCcEeeec
Confidence 99999997
No 280
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=95.67 E-value=1 Score=51.75 Aligned_cols=189 Identities=13% Similarity=0.062 Sum_probs=104.2
Q ss_pred EEEEe-cCCeEEEecCCCeEEEEeccCcceEEEeeeeecCCCCcccceeEEEecCCCCCeeEecCCCccEEEEEcc-ccc
Q 000725 1016 CILVC-EPKHLIAVGESGKLHLWEMNSSWSAQVEECIIPINDCIYPCIVEMKRIPKCAPLVVGHNGFGEFGIWDIS-KRV 1093 (1329)
Q Consensus 1016 cIlVc-DpnhLVSaSdDGkL~IWDM~SgWsm~tee~Vi~~n~~v~p~I~elKrFpkss~lIVTgSGDgtf~LWDIs-kg~ 1093 (1329)
|+=|. -+..|+++=.+|++.+ .+...+..+. | ..-+.|--.++-.+-=-+..++|-||+-|+.++-||++ .++
T Consensus 126 slD~~~~~~~i~vs~s~G~~~~---v~~t~~~le~-v-q~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~ 200 (339)
T KOG0280|consen 126 SLDISTSGTKIFVSDSRGSISG---VYETEMVLEK-V-QTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKT 200 (339)
T ss_pred EEEeeccCceEEEEcCCCcEEE---Eecceeeeee-c-ccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcc
Confidence 33344 4455676667788772 3322222222 0 00001111133332112445899999999999999999 455
Q ss_pred eeee-eccCccceeEe--ccc-c----ccccccCcceEECcchhhhc-cccccccccCCCceeecCCCCccc--------
Q 000725 1094 LVSR-FSAARASIYQF--FPI-N----LFSWQRNGSVSMDASLELTN-TATTSLFSKHSEKSSFCPSVGEDS-------- 1156 (1329)
Q Consensus 1094 llqs-F~ahs~sV~sf--sP~-~----s~S~d~~v~tfd~~s~d~~l-eatv~~fSgdvn~VsF~P~sGeD~-------- 1156 (1329)
++=+ -.-|..=|.++ +|- . ++|||+.+++||+++.-+-+ .+.+. |.+=.+.-+| +++
T Consensus 201 ~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~---GGVWRi~~~p---~~~~~lL~~CM 274 (339)
T KOG0280|consen 201 FIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVG---GGVWRIKHHP---EIFHRLLAACM 274 (339)
T ss_pred eeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccc---cceEEEEecc---hhhhHHHHHHH
Confidence 5433 44566777772 222 1 89999999999999887774 32222 4444455565 232
Q ss_pred --eEEEEeeccCccchhhcccccccCCCCcceeEEEeeeccceecCCCCCCCceeeecCCCeEEeecCCCeEE-EEEccc
Q 000725 1157 --AIWLLVSTISDSDAQHNCMSRDCQKNPVRFWRLALLVKNRVILGSPLDPRASAIGASSGLGIIGTNDGLVY-AWELSS 1233 (1329)
Q Consensus 1157 --AiwLLVST~Sdd~t~~Dlra~~~~gH~n~~wRLALl~K~siI~Gs~ldpra~afs~SG~~gfaGT~DGlVY-mWDLst 1233 (1329)
|.-||-+...... ++.+...+.+|..= -.|.+-|-....+.+ |.-.|+.++ +|.-.|
T Consensus 275 h~G~ki~~~~~~~~e--~~~~~~s~~~hdSl------------~YG~DWd~~~~~lAT------CsFYDk~~~~~Wl~~t 334 (339)
T KOG0280|consen 275 HNGAKILDSSDKVLE--FQIVLPSDKIHDSL------------CYGGDWDSKDSFLAT------CSFYDKKIRQLWLHIT 334 (339)
T ss_pred hcCceEEEecccccc--hheeeeccccccce------------eeccccccccceeee------eeccccceeeeeeecc
Confidence 3334432222222 66666666666532 234444444333333 446788866 998877
Q ss_pred cc
Q 000725 1234 GN 1235 (1329)
Q Consensus 1234 G~ 1235 (1329)
|.
T Consensus 335 ~~ 336 (339)
T KOG0280|consen 335 GE 336 (339)
T ss_pred CC
Confidence 74
No 281
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=95.65 E-value=0.03 Score=38.18 Aligned_cols=39 Identities=28% Similarity=0.543 Sum_probs=30.2
Q ss_pred cceeeeeecccCceEEEEEecCCCCceEEEecCCCCCCccccCCCCCCCCcEEEee
Q 000725 1234 GNKLGILHHFKGGTVSCIATDDSGLQALAVAGDGPDGGRRQRDPRHGQNDHVRIWK 1289 (1329)
Q Consensus 1234 G~kL~tL~~Heg~rVSCVA~dps~p~~~AsA~d~~d~~~r~~~~~~s~D~~VRiW~ 1289 (1329)
++.+..+.+|.+ .|.|++.+|.... ++++ +.|++|++|+
T Consensus 2 ~~~~~~~~~~~~-~i~~~~~~~~~~~-~~~~---------------~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTG-PVTSVAFSPDGKY-LASA---------------SDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCC-ceeEEEECCCCCE-EEEe---------------cCCCeEEEcC
Confidence 556778889998 8999999987754 6666 6677777774
No 282
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=95.44 E-value=0.1 Score=60.51 Aligned_cols=262 Identities=12% Similarity=0.128 Sum_probs=153.1
Q ss_pred ccceeeecCCCcEEEEecCccCccccCCCccccccccccccCCCCcEEEEEecCcc---eeeeEEEecc-----------
Q 000725 946 ERSCALFTPDGQYLVLLDSMKTPYCREGRSDCLCSTCTSHRLDENAVKIVKVKPGY---VSVVAKLKTD----------- 1011 (1329)
Q Consensus 946 ersglqFTPDGQ~LvLlgsik~p~CR~~~~dC~Cs~C~~s~seDNtVKIv~V~~G~---vsll~kL~~h----------- 1011 (1329)
-.+.|-|.-+|.||+ .|..++-|-|++=..-+ --..++|..|
T Consensus 27 iis~vef~~~Ge~La------------------------tGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSle 82 (433)
T KOG1354|consen 27 IISAVEFDHYGERLA------------------------TGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLE 82 (433)
T ss_pred ceeeEEeecccceEe------------------------ecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhh
Confidence 468899999999999 66667777776632222 1244555555
Q ss_pred --cceeEEEEe---cCCeEEEecCCCeEEEEeccC------cceEE--------------Eee-----eee-cCCCC---
Q 000725 1012 --DCVQCILVC---EPKHLIAVGESGKLHLWEMNS------SWSAQ--------------VEE-----CII-PINDC--- 1057 (1329)
Q Consensus 1012 --~sV~cIlVc---DpnhLVSaSdDGkL~IWDM~S------gWsm~--------------tee-----~Vi-~~n~~--- 1057 (1329)
..|.-|-|| ..++..-+.-|++|++|-+.- +|-.+ .+- +.+ |---|
T Consensus 83 ieEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNa 162 (433)
T KOG1354|consen 83 IEEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANA 162 (433)
T ss_pred hhhhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeecccc
Confidence 357788999 445677777899999998421 11110 000 111 00000
Q ss_pred cccceeEEEecCCCCCeeEecCCCccEEEEEccccce---eeeeccCccc-----eeE--eccccc-----cccccCcce
Q 000725 1058 IYPCIVEMKRIPKCAPLVVGHNGFGEFGIWDISKRVL---VSRFSAARAS-----IYQ--FFPINL-----FSWQRNGSV 1122 (1329)
Q Consensus 1058 v~p~I~elKrFpkss~lIVTgSGDgtf~LWDIskg~l---lqsF~ahs~s-----V~s--fsP~~s-----~S~d~~v~t 1122 (1329)
|.=-|..+ -++.+.+-.++.+ |=.|-||.++.-.- |-.+..|... |++ |.|..+ .|--|+||+
T Consensus 163 HtyhiNSI-S~NsD~Et~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrL 240 (433)
T KOG1354|consen 163 HTYHINSI-SVNSDKETFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRL 240 (433)
T ss_pred ceeEeeee-eecCccceEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEE
Confidence 22223344 6777777777765 45667776554322 3333333321 222 666652 123456666
Q ss_pred EECcchhh---h--c-c-----cccccccc---CCCceeecCCCCccceEEEEeeccC-ccchhhccc-----ccccCCC
Q 000725 1123 SMDASLEL---T--N-T-----ATTSLFSK---HSEKSSFCPSVGEDSAIWLLVSTIS-DSDAQHNCM-----SRDCQKN 1182 (1329)
Q Consensus 1123 fd~~s~d~---~--l-e-----atv~~fSg---dvn~VsF~P~sGeD~AiwLLVST~S-dd~t~~Dlr-----a~~~~gH 1182 (1329)
-|.+...+ + + + ....-|++ -+.-|.|++ + |..|| |.+ -+.++||+- ..+|+.|
T Consensus 241 cDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~----s-Gryil--sRDyltvk~wD~nme~~pv~t~~vh 313 (433)
T KOG1354|consen 241 CDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSH----S-GRYIL--SRDYLTVKLWDLNMEAKPVETYPVH 313 (433)
T ss_pred eechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEcc----C-CcEEE--EeccceeEEEeccccCCcceEEeeh
Confidence 66653222 2 2 1 22223333 333489998 4 66666 555 778889994 3334444
Q ss_pred CcceeEE-EeeeccceecCCCCCCCceeeecCCCeEEeecCCCeEEEEEcccccee-eeeecccC
Q 000725 1183 PVRFWRL-ALLVKNRVILGSPLDPRASAIGASSGLGIIGTNDGLVYAWELSSGNKL-GILHHFKG 1245 (1329)
Q Consensus 1183 ~n~~wRL-ALl~K~siI~Gs~ldpra~afs~SG~~gfaGT~DGlVYmWDLstG~kL-~tL~~Heg 1245 (1329)
---+=+| +||++++|+=- --|+++-++.++++|+.-+.+.|.++..|++- .+|++-.+
T Consensus 314 ~~lr~kLc~lYEnD~IfdK-----Fec~~sg~~~~v~TGsy~n~frvf~~~~gsk~d~tl~asr~ 373 (433)
T KOG1354|consen 314 EYLRSKLCSLYENDAIFDK-----FECSWSGNDSYVMTGSYNNVFRVFNLARGSKEDFTLEASRK 373 (433)
T ss_pred HhHHHHHHHHhhccchhhe-----eEEEEcCCcceEecccccceEEEecCCCCcceeeccccccc
Confidence 3333233 57777776533 46888888999999999999999999998764 45554443
No 283
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=95.40 E-value=2.8 Score=46.25 Aligned_cols=98 Identities=13% Similarity=0.175 Sum_probs=59.5
Q ss_pred CcEEEEEecCcceeeeEEEecccceeEEEEe--c------CCeEEEecC----------CCeEEEEeccCc-ceEEEeee
Q 000725 990 NAVKIVKVKPGYVSVVAKLKTDDCVQCILVC--E------PKHLIAVGE----------SGKLHLWEMNSS-WSAQVEEC 1050 (1329)
Q Consensus 990 NtVKIv~V~~G~vsll~kL~~h~sV~cIlVc--D------pnhLVSaSd----------DGkL~IWDM~Sg-Wsm~tee~ 1050 (1329)
..|||++..+..+=-...|..+..+.|+.++ + ..+||-+.- +|+|.+.++... +.....+.
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 4689999988764344567777888888777 2 344443211 299999999994 32222332
Q ss_pred eecCCCCcccceeEEEecCCCCCeeEecCCCccEEEEEccccc
Q 000725 1051 IIPINDCIYPCIVEMKRIPKCAPLVVGHNGFGEFGIWDISKRV 1093 (1329)
Q Consensus 1051 Vi~~n~~v~p~I~elKrFpkss~lIVTgSGDgtf~LWDIskg~ 1093 (1329)
+.-- -+...+.++..| .+.+|++-+ .++.+|++...+
T Consensus 82 i~~~--~~~g~V~ai~~~--~~~lv~~~g--~~l~v~~l~~~~ 118 (321)
T PF03178_consen 82 IHST--EVKGPVTAICSF--NGRLVVAVG--NKLYVYDLDNSK 118 (321)
T ss_dssp EEEE--EESS-EEEEEEE--TTEEEEEET--TEEEEEEEETTS
T ss_pred EEEE--eecCcceEhhhh--CCEEEEeec--CEEEEEEccCcc
Confidence 2200 122347777666 345666554 889999999998
No 284
>PRK04043 tolB translocation protein TolB; Provisional
Probab=95.18 E-value=0.7 Score=53.90 Aligned_cols=176 Identities=10% Similarity=0.041 Sum_probs=101.1
Q ss_pred eeeecCCCcEEEEecCccCccccCCCccccccccccccCCCCcEEEEEecCcceeeeEEEecccceeEEEEe-cCCeEE-
Q 000725 949 CALFTPDGQYLVLLDSMKTPYCREGRSDCLCSTCTSHRLDENAVKIVKVKPGYVSVVAKLKTDDCVQCILVC-EPKHLI- 1026 (1329)
Q Consensus 949 glqFTPDGQ~LvLlgsik~p~CR~~~~dC~Cs~C~~s~seDNtVKIv~V~~G~vsll~kL~~h~sV~cIlVc-DpnhLV- 1026 (1329)
..+|+|||+.++++.+.+. ..-.|-++++.+|....++.+.+ .+....|+ |.++|+
T Consensus 192 ~p~wSpDG~~~i~y~s~~~--------------------~~~~Iyv~dl~tg~~~~lt~~~g--~~~~~~~SPDG~~la~ 249 (419)
T PRK04043 192 FPKWANKEQTAFYYTSYGE--------------------RKPTLYKYNLYTGKKEKIASSQG--MLVVSDVSKDGSKLLL 249 (419)
T ss_pred eEEECCCCCcEEEEEEccC--------------------CCCEEEEEECCCCcEEEEecCCC--cEEeeEECCCCCEEEE
Confidence 6789999998665555432 12368899999999777776444 34445678 887775
Q ss_pred EecCC--CeEEEEeccCcceEEEeeeeecCCCCcccceeEEEecCCCCCeeE-ecCCC--ccEEEEEccccceeee-ecc
Q 000725 1027 AVGES--GKLHLWEMNSSWSAQVEECIIPINDCIYPCIVEMKRIPKCAPLVV-GHNGF--GEFGIWDISKRVLVSR-FSA 1100 (1329)
Q Consensus 1027 SaSdD--GkL~IWDM~SgWsm~tee~Vi~~n~~v~p~I~elKrFpkss~lIV-TgSGD--gtf~LWDIskg~llqs-F~a 1100 (1329)
+.+.+ ..|.++|++++-..+... ... ...+- .|.++++.|+ +.+.. -.+-+.|+.+|+..+. |.+
T Consensus 250 ~~~~~g~~~Iy~~dl~~g~~~~LT~-----~~~---~d~~p-~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g 320 (419)
T PRK04043 250 TMAPKGQPDIYLYDTNTKTLTQITN-----YPG---IDVNG-NFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHG 320 (419)
T ss_pred EEccCCCcEEEEEECCCCcEEEccc-----CCC---ccCcc-EECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCC
Confidence 44444 456666777774333211 111 11223 5777786544 33233 3677789988887333 333
Q ss_pred CccceeEecccc---cccccc----------CcceEECcchhhhccccccccccCCCceeecCCCCccceEEEEeeccC
Q 000725 1101 ARASIYQFFPIN---LFSWQR----------NGSVSMDASLELTNTATTSLFSKHSEKSSFCPSVGEDSAIWLLVSTIS 1166 (1329)
Q Consensus 1101 hs~sV~sfsP~~---s~S~d~----------~v~tfd~~s~d~~leatv~~fSgdvn~VsF~P~sGeD~AiwLLVST~S 1166 (1329)
.. ...++|++ .+.... .+.+.+..+++.+..... +..+..+|+| | +.+|+.++..
T Consensus 321 ~~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~----~~~~~p~~SP----D-G~~I~f~~~~ 388 (419)
T PRK04043 321 KN--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTAN----GVNQFPRFSS----D-GGSIMFIKYL 388 (419)
T ss_pred Cc--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCCC----CCcCCeEECC----C-CCEEEEEEcc
Confidence 22 24699998 222221 234445455554421111 1233488999 7 7777766553
No 285
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=95.08 E-value=0.058 Score=62.35 Aligned_cols=136 Identities=12% Similarity=0.149 Sum_probs=99.0
Q ss_pred cccCCCCcEEEEEecCcceeeeEEEecccceeEEEEe-cCCeEEEecCCCeEEEEeccC-----cceEEEeeeeecCCCC
Q 000725 984 SHRLDENAVKIVKVKPGYVSVVAKLKTDDCVQCILVC-EPKHLIAVGESGKLHLWEMNS-----SWSAQVEECIIPINDC 1057 (1329)
Q Consensus 984 ~s~seDNtVKIv~V~~G~vsll~kL~~h~sV~cIlVc-DpnhLVSaSdDGkL~IWDM~S-----gWsm~tee~Vi~~n~~ 1057 (1329)
.+-+.+-.|-|++|++|. -+-|.+-..|-..-+. -.+-+..+--.|-|...|+.. +|...++|
T Consensus 228 fs~G~sqqv~L~nvetg~---~qsf~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-------- 296 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGH---QQSFQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-------- 296 (425)
T ss_pred ecccccceeEEEEeeccc---ccccccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE--------
Confidence 346678889999999997 3334444556555555 356677777899999999887 59999998
Q ss_pred cccceeEEEecCCCCCeeEecCCCccEEEEEccccce---eeeeccCccceeEecccc-------ccc--cccCcceEEC
Q 000725 1058 IYPCIVEMKRIPKCAPLVVGHNGFGEFGIWDISKRVL---VSRFSAARASIYQFFPIN-------LFS--WQRNGSVSMD 1125 (1329)
Q Consensus 1058 v~p~I~elKrFpkss~lIVTgSGDgtf~LWDIskg~l---lqsF~ahs~sV~sfsP~~-------s~S--~d~~v~tfd~ 1125 (1329)
|.+.|-+|+..--+++.++.-+-+|+|+|||..--++ |++++||.+.-. ..|-. -+| -|=--|+|++
T Consensus 297 h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a-~l~~~v~~eeg~I~s~GdDcytRiWsl 375 (425)
T KOG2695|consen 297 HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSA-YLPAHVKEEEGSIFSVGDDCYTRIWSL 375 (425)
T ss_pred cCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeeccccccc-ccccccccccceEEEccCeeEEEEEec
Confidence 7788888844433899999999999999999998888 999999988621 33322 111 1222377777
Q ss_pred cchhhh
Q 000725 1126 ASLELT 1131 (1329)
Q Consensus 1126 ~s~d~~ 1131 (1329)
.++.++
T Consensus 376 ~~ghLl 381 (425)
T KOG2695|consen 376 DSGHLL 381 (425)
T ss_pred ccCcee
Confidence 777766
No 286
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=95.02 E-value=0.077 Score=61.40 Aligned_cols=123 Identities=13% Similarity=0.195 Sum_probs=83.7
Q ss_pred cceeeecCCCcEEEEecCccCccccCCCccccccccccccCCCCcEEEEEecCc---ceeeeEEEecccceeEEEEe--c
Q 000725 947 RSCALFTPDGQYLVLLDSMKTPYCREGRSDCLCSTCTSHRLDENAVKIVKVKPG---YVSVVAKLKTDDCVQCILVC--E 1021 (1329)
Q Consensus 947 rsglqFTPDGQ~LvLlgsik~p~CR~~~~dC~Cs~C~~s~seDNtVKIv~V~~G---~vsll~kL~~h~sV~cIlVc--D 1021 (1329)
-+.+||-.-+.+|. --||-|+ |-.+|+-++ .-...+.|--.-+|-|+-+- +
T Consensus 255 VfAlQf~~s~nLv~-------~GcRnge-----------------I~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s 310 (425)
T KOG2695|consen 255 VFALQFAGSDNLVF-------NGCRNGE-----------------IFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFS 310 (425)
T ss_pred HHHHHhcccCCeeE-------ecccCCc-----------------EEEEEeeecccCCCcceEEEEcCcchhhhhhhccc
Confidence 45678877666655 2366554 444444332 12233333333444444433 7
Q ss_pred CCeEEEecCCCeEEEEeccCcce---EEEeeeeecCCCCccccee--EEEecCCCCCeeEecCCCccEEEEEccccceee
Q 000725 1022 PKHLIAVGESGKLHLWEMNSSWS---AQVEECIIPINDCIYPCIV--EMKRIPKCAPLVVGHNGFGEFGIWDISKRVLVS 1096 (1329)
Q Consensus 1022 pnhLVSaSdDGkL~IWDM~SgWs---m~tee~Vi~~n~~v~p~I~--elKrFpkss~lIVTgSGDgtf~LWDIskg~llq 1096 (1329)
..+|++++.+|||.+||...+=+ ++.+| ||....- .+ -+.+.--.|++++-|..-|||-+..|.++.
T Consensus 311 ~q~LmaS~M~gkikLyD~R~~K~~~~V~qYe-------GHvN~~a~l~~-~v~~eeg~I~s~GdDcytRiWsl~~ghLl~ 382 (425)
T KOG2695|consen 311 QQKLMASDMTGKIKLYDLRATKCKKSVMQYE-------GHVNLSAYLPA-HVKEEEGSIFSVGDDCYTRIWSLDSGHLLC 382 (425)
T ss_pred cceEeeccCcCceeEeeehhhhcccceeeee-------ccccccccccc-ccccccceEEEccCeeEEEEEecccCceee
Confidence 78999999999999999776666 88888 7654432 23 566777889999999999999999999999
Q ss_pred eeccC
Q 000725 1097 RFSAA 1101 (1329)
Q Consensus 1097 sF~ah 1101 (1329)
++.-+
T Consensus 383 tipf~ 387 (425)
T KOG2695|consen 383 TIPFP 387 (425)
T ss_pred ccCCC
Confidence 88743
No 287
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=94.99 E-value=1.1 Score=55.89 Aligned_cols=264 Identities=17% Similarity=0.216 Sum_probs=147.6
Q ss_pred cccceeeecCCCcEEEEecCccCccccCCCccccccccccccCCCCcEEEEEecC--------c-----ceeeeEEEecc
Q 000725 945 LERSCALFTPDGQYLVLLDSMKTPYCREGRSDCLCSTCTSHRLDENAVKIVKVKP--------G-----YVSVVAKLKTD 1011 (1329)
Q Consensus 945 ~ersglqFTPDGQ~LvLlgsik~p~CR~~~~dC~Cs~C~~s~seDNtVKIv~V~~--------G-----~vsll~kL~~h 1011 (1329)
...-++.|+-...|++ -++.|+.+|++.+.+ | .+|+-++|+||
T Consensus 15 vkL~c~~WNke~gyIA------------------------cgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH 70 (1189)
T KOG2041|consen 15 VKLHCAEWNKESGYIA------------------------CGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGH 70 (1189)
T ss_pred ceEEEEEEcccCCeEE------------------------eccccceeEEEEccccCCcccccccccccccchhhhhccC
Confidence 3456788888888999 789999999997543 2 45788999999
Q ss_pred -cceeEEEEec-CCeEEEecCCCeEEEEecc-CcceEEEeeeeecCCCC-cccceeEE---E--ecCCCCCeeEecCCCc
Q 000725 1012 -DCVQCILVCE-PKHLIAVGESGKLHLWEMN-SSWSAQVEECIIPINDC-IYPCIVEM---K--RIPKCAPLVVGHNGFG 1082 (1329)
Q Consensus 1012 -~sV~cIlVcD-pnhLVSaSdDGkL~IWDM~-SgWsm~tee~Vi~~n~~-v~p~I~el---K--rFpkss~lIVTgSGDg 1082 (1329)
++|+-|.|.| ...|-|+-.+|-|+||.|- -.|. +|+|---|+. |-+-.+.+ | .+-. +--||-||-||
T Consensus 71 ~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~---EEMiNnRnKSvV~SmsWn~dG~kIcIvYe-DGavIVGsvdG 146 (1189)
T KOG2041|consen 71 NASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWC---EEMINNRNKSVVVSMSWNLDGTKICIVYE-DGAVIVGSVDG 146 (1189)
T ss_pred cceEEEEEeccccccccccCCCceEEEEeeecccHH---HHHhhCcCccEEEEEEEcCCCcEEEEEEc-cCCEEEEeecc
Confidence 9999999995 5567778889999999964 4463 4544444444 22222221 1 2223 33455567787
Q ss_pred cEEEEEcc-ccceeeeeccCccceeEecccc----ccccccCcceEECcch-hhhc------------------cccccc
Q 000725 1083 EFGIWDIS-KRVLVSRFSAARASIYQFFPIN----LFSWQRNGSVSMDASL-ELTN------------------TATTSL 1138 (1329)
Q Consensus 1083 tf~LWDIs-kg~llqsF~ahs~sV~sfsP~~----s~S~d~~v~tfd~~s~-d~~l------------------eatv~~ 1138 (1329)
. |||-=+ +|++++-. ..+|+. ..--.|.+++|+.-.. +.++ .+...|
T Consensus 147 N-RIwgKeLkg~~l~hv--------~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w 217 (1189)
T KOG2041|consen 147 N-RIWGKELKGQLLAHV--------LWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEW 217 (1189)
T ss_pred c-eecchhcchheccce--------eecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceee
Confidence 6 889644 44544411 244554 2234577788876443 2222 222344
Q ss_pred cccCCCceeecCCCCccceEEEEeeccCccchhhccc-ccccCCCCcceeEEEeeeccceecCCCCCCCceeeecCCCeE
Q 000725 1139 FSKHSEKSSFCPSVGEDSAIWLLVSTISDSDAQHNCM-SRDCQKNPVRFWRLALLVKNRVILGSPLDPRASAIGASSGLG 1217 (1329)
Q Consensus 1139 fSgdvn~VsF~P~sGeD~AiwLLVST~Sdd~t~~Dlr-a~~~~gH~n~~wRLALl~K~siI~Gs~ldpra~afs~SG~~g 1217 (1329)
++| .+.+.|+ | --+|.|--... ++.=+| .++ + .=++.--.+-|.|..-.|.-+.+.++|...
T Consensus 218 ~~g---~~~~v~p---d-rP~lavcy~nG--r~QiMR~eND----~----~Pvv~dtgm~~vgakWnh~G~vLAvcG~~~ 280 (1189)
T KOG2041|consen 218 NTG---PYQPVPP---D-RPRLAVCYANG--RMQIMRSEND----P----EPVVVDTGMKIVGAKWNHNGAVLAVCGNDS 280 (1189)
T ss_pred ccC---ccccCCC---C-CCEEEEEEcCc--eehhhhhcCC----C----CCeEEecccEeecceecCCCcEEEEccCcc
Confidence 444 1222221 3 11222111111 111111 111 0 122333345666776666666666666554
Q ss_pred Eeec--CCCeEEEEEccccceeeeeecccCceEEEEEecCCCCceEEEec
Q 000725 1218 IIGT--NDGLVYAWELSSGNKLGILHHFKGGTVSCIATDDSGLQALAVAG 1265 (1329)
Q Consensus 1218 faGT--~DGlVYmWDLstG~kL~tL~~Heg~rVSCVA~dps~p~~~AsA~ 1265 (1329)
-+-. .-+.|..+ .-=|..+++|+--.. -++.+.---++-+ ||.|-
T Consensus 281 da~~~~d~n~v~Fy-sp~G~i~gtlkvpg~-~It~lsWEg~gLr-iA~Av 327 (1189)
T KOG2041|consen 281 DADEPTDSNKVHFY-SPYGHIVGTLKVPGS-CITGLSWEGTGLR-IAIAV 327 (1189)
T ss_pred cccCccccceEEEe-ccchhheEEEecCCc-eeeeeEEcCCceE-EEEEe
Confidence 4332 12234433 234888888886666 5777777755555 66663
No 288
>PRK04043 tolB translocation protein TolB; Provisional
Probab=94.94 E-value=5.8 Score=46.57 Aligned_cols=296 Identities=12% Similarity=0.093 Sum_probs=144.0
Q ss_pred EEEEEecccc-ccc---eEEEEEEeeeCCCCCCCCceeeccccccccccccccccccccc--ceeeecCCCcEEEEecCc
Q 000725 892 YVCVSCGFLV-DKK---RTLFIYTVDIQEPRVGNPSCVGHTSVMLPFLKDNFGREIALER--SCALFTPDGQYLVLLDSM 965 (1329)
Q Consensus 892 ~IcVlCG~L~-~~~---r~Lf~Yki~i~~~~~~~p~~vg~t~~llp~~~~~~~~~~~~er--sglqFTPDGQ~LvLlgsi 965 (1329)
...|..++.. ... ..+.+|.+.-.....+. .+-+.+.-.|+.+-+.+.-++.... .|..|.- .++++-..
T Consensus 88 ~~lv~g~~~~~~~~~~~v~~~l~dv~~~~~~~~~-~~~~~~~~~~r~~aH~~~d~i~~~l~~~~~~f~~---r~~~v~~~ 163 (419)
T PRK04043 88 DLVFRYSLANKNGNKLSLRVKLYDVNTGSLKFEK-DYTINSLDRYPFLAHKSAIDINDYLKAPSIDWMK---RKVVFSKY 163 (419)
T ss_pred CEEEEEEEEECCCCeEEEEEEEEEcCCCCEEeee-EEEccchhhhHHHHHHHHHHHHHHhCCCCcCcee---eEEEEEEc
Confidence 4455555531 222 35567776544434444 3334444446777666666655222 1222321 33333221
Q ss_pred cCccccCCCccccccccccccCCCCcEEEEEecCcceeeeEEEecccceeEEEEe-cCCe-EEEecC---CCeEEEEecc
Q 000725 966 KTPYCREGRSDCLCSTCTSHRLDENAVKIVKVKPGYVSVVAKLKTDDCVQCILVC-EPKH-LIAVGE---SGKLHLWEMN 1040 (1329)
Q Consensus 966 k~p~CR~~~~dC~Cs~C~~s~seDNtVKIv~V~~G~vsll~kL~~h~sV~cIlVc-Dpnh-LVSaSd---DGkL~IWDM~ 1040 (1329)
..| ...-|-|.|....+ ...-+.+ .....-.|+ |+++ ++-++. +..|+++|+.
T Consensus 164 ~~~-------------------~~~~l~~~d~dg~~--~~~~~~~-~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~ 221 (419)
T PRK04043 164 TGP-------------------KKSNIVLADYTLTY--QKVIVKG-GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLY 221 (419)
T ss_pred cCC-------------------CcceEEEECCCCCc--eeEEccC-CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECC
Confidence 111 23566777776665 3222222 344556677 8886 443333 3568899999
Q ss_pred CcceEEEeeeeecCCCCcccceeEEEecCCCCCee-Eec--CCCccEEEEEccccceeeeeccCcccee-Eecccc---c
Q 000725 1041 SSWSAQVEECIIPINDCIYPCIVEMKRIPKCAPLV-VGH--NGFGEFGIWDISKRVLVSRFSAARASIY-QFFPIN---L 1113 (1329)
Q Consensus 1041 SgWsm~tee~Vi~~n~~v~p~I~elKrFpkss~lI-VTg--SGDgtf~LWDIskg~llqsF~ahs~sV~-sfsP~~---s 1113 (1329)
++...+... .++ ..... +|.+++..| ++. +++..+-++|+..+...+-......++. .|+|++ .
T Consensus 222 tg~~~~lt~-----~~g---~~~~~-~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~ 292 (419)
T PRK04043 222 TGKKEKIAS-----SQG---MLVVS-DVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIV 292 (419)
T ss_pred CCcEEEEec-----CCC---cEEee-EECCCCCEEEEEEccCCCcEEEEEECCCCcEEEcccCCCccCccEECCCCCEEE
Confidence 987766543 111 11123 567777544 344 4456777779999986554333333332 399998 2
Q ss_pred ccccc----CcceEECcchhhhccccccccccCCCceeecCCCCccceEEEEeeccCccc----hhhcccccccCCCCcc
Q 000725 1114 FSWQR----NGSVSMDASLELTNTATTSLFSKHSEKSSFCPSVGEDSAIWLLVSTISDSD----AQHNCMSRDCQKNPVR 1185 (1329)
Q Consensus 1114 ~S~d~----~v~tfd~~s~d~~leatv~~fSgdvn~VsF~P~sGeD~AiwLLVST~Sdd~----t~~Dlra~~~~gH~n~ 1185 (1329)
|.-++ .|-+.+..+++.++ ..+.+..+ ..++| | +.+|+..+..... ..+++..-+..+ ..
T Consensus 293 F~Sdr~g~~~Iy~~dl~~g~~~r----lt~~g~~~-~~~SP----D-G~~Ia~~~~~~~~~~~~~~~~I~v~d~~~--g~ 360 (419)
T PRK04043 293 FVSDRLGYPNIFMKKLNSGSVEQ----VVFHGKNN-SSVST----Y-KNYIVYSSRETNNEFGKNTFNLYLISTNS--DY 360 (419)
T ss_pred EEECCCCCceEEEEECCCCCeEe----CccCCCcC-ceECC----C-CCEEEEEEcCCCcccCCCCcEEEEEECCC--CC
Confidence 33332 23333334443322 11223333 57999 6 6666555543211 001111100000 11
Q ss_pred eeEEEeeeccceecCCCCCCCceeeecCCCeEEeecCC-C--eEEEEEccccceeeeeecccC
Q 000725 1186 FWRLALLVKNRVILGSPLDPRASAIGASSGLGIIGTND-G--LVYAWELSSGNKLGILHHFKG 1245 (1329)
Q Consensus 1186 ~wRLALl~K~siI~Gs~ldpra~afs~SG~~gfaGT~D-G--lVYmWDLstG~kL~tL~~Heg 1245 (1329)
++ .|+.. | .|- ...++|+|+.++-.+.+ + .+++.++ .|++...|-...|
T Consensus 361 -~~--~LT~~----~--~~~-~p~~SPDG~~I~f~~~~~~~~~L~~~~l-~g~~~~~l~~~~g 412 (419)
T PRK04043 361 -IR--RLTAN----G--VNQ-FPRFSSDGGSIMFIKYLGNQSALGIIRL-NYNKSFLFPLKVG 412 (419)
T ss_pred -eE--ECCCC----C--CcC-CeEECCCCCEEEEEEccCCcEEEEEEec-CCCeeEEeecCCC
Confidence 11 12221 1 222 36789999976544432 2 4777777 4555555544333
No 289
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=94.91 E-value=0.38 Score=58.44 Aligned_cols=69 Identities=17% Similarity=0.240 Sum_probs=54.9
Q ss_pred ccceeeecCCCcEEEEecCccCccccCCCccccccccccccCCCCcEEEEEecCcceeeeEEEecc-cceeEEEEe-cCC
Q 000725 946 ERSCALFTPDGQYLVLLDSMKTPYCREGRSDCLCSTCTSHRLDENAVKIVKVKPGYVSVVAKLKTD-DCVQCILVC-EPK 1023 (1329)
Q Consensus 946 ersglqFTPDGQ~LvLlgsik~p~CR~~~~dC~Cs~C~~s~seDNtVKIv~V~~G~vsll~kL~~h-~sV~cIlVc-Dpn 1023 (1329)
.-.+.+++|+-..|| -|++|++|.+|+..++. +++.-. =-...|.|- |..
T Consensus 261 ~v~~ca~sp~E~kLv------------------------lGC~DgSiiLyD~~~~~----t~~~ka~~~P~~iaWHp~ga 312 (545)
T PF11768_consen 261 QVICCARSPSEDKLV------------------------LGCEDGSIILYDTTRGV----TLLAKAEFIPTLIAWHPDGA 312 (545)
T ss_pred cceEEecCcccceEE------------------------EEecCCeEEEEEcCCCe----eeeeeecccceEEEEcCCCc
Confidence 356788999999999 89999999999999974 333333 234455565 889
Q ss_pred eEEEecCCCeEEEEeccCc
Q 000725 1024 HLIAVGESGKLHLWEMNSS 1042 (1329)
Q Consensus 1024 hLVSaSdDGkL~IWDM~Sg 1042 (1329)
.++.+++-|.|.+|||+-.
T Consensus 313 i~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 313 IFVVGSEQGELQCFDMALS 331 (545)
T ss_pred EEEEEcCCceEEEEEeecC
Confidence 9999999999999998763
No 290
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=94.89 E-value=5.1 Score=46.23 Aligned_cols=85 Identities=15% Similarity=0.235 Sum_probs=55.9
Q ss_pred cEEEEEecCcceeeeEEEecccce----eEEEEecCCeEEEecC-----CCeEEEEeccCcceEEEeeeeecCCCCcccc
Q 000725 991 AVKIVKVKPGYVSVVAKLKTDDCV----QCILVCEPKHLIAVGE-----SGKLHLWEMNSSWSAQVEECIIPINDCIYPC 1061 (1329)
Q Consensus 991 tVKIv~V~~G~vsll~kL~~h~sV----~cIlVcDpnhLVSaSd-----DGkL~IWDM~SgWsm~tee~Vi~~n~~v~p~ 1061 (1329)
-.-+||..+|. +++.+.+-+.= |.+.--|.++|++.+. .|.|-|||+..+....-|+ +-.+++|
T Consensus 29 ~~~v~D~~~g~--~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~----~s~GIGP- 101 (305)
T PF07433_consen 29 FALVFDCRTGQ--LLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEF----PSHGIGP- 101 (305)
T ss_pred EEEEEEcCCCc--eeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEe----cCCCcCh-
Confidence 45677788877 66666654332 3343348888888765 4899999999777777776 4445665
Q ss_pred eeEEEecCCCCCeeEecCCCcc
Q 000725 1062 IVEMKRIPKCAPLVVGHNGFGE 1083 (1329)
Q Consensus 1062 I~elKrFpkss~lIVTgSGDgt 1083 (1329)
.|+..+|....|||.-+|-.|
T Consensus 102 -Hel~l~pDG~tLvVANGGI~T 122 (305)
T PF07433_consen 102 -HELLLMPDGETLVVANGGIET 122 (305)
T ss_pred -hhEEEcCCCCEEEEEcCCCcc
Confidence 455234443388888777544
No 291
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=94.86 E-value=4.7 Score=47.78 Aligned_cols=247 Identities=11% Similarity=0.031 Sum_probs=124.4
Q ss_pred cCCCCcEEEEEecCcceeeeEEEecccc-------eeEEEEecCCeEEEe--------cCCCeEEEEeccCcceEEEeee
Q 000725 986 RLDENAVKIVKVKPGYVSVVAKLKTDDC-------VQCILVCEPKHLIAV--------GESGKLHLWEMNSSWSAQVEEC 1050 (1329)
Q Consensus 986 ~seDNtVKIv~V~~G~vsll~kL~~h~s-------V~cIlVcDpnhLVSa--------SdDGkL~IWDM~SgWsm~tee~ 1050 (1329)
++.++.|.-++.++|. ++=++...+. .....|.+...+|.+ +.+|.|+--|..||...=...+
T Consensus 116 ~~~~g~v~AlD~~TG~--~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~ 193 (488)
T cd00216 116 GTFDGRLVALDAETGK--QVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYT 193 (488)
T ss_pred ecCCCeEEEEECCCCC--EeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeec
Confidence 4567889999999998 6666555433 234455554444433 2478999999998865555543
Q ss_pred eecCC------C-----C--cccceeEEEecCCCCCeeEecCCCc------------------cEEEEEccccceeeeec
Q 000725 1051 IIPIN------D-----C--IYPCIVEMKRIPKCAPLVVGHNGFG------------------EFGIWDISKRVLVSRFS 1099 (1329)
Q Consensus 1051 Vi~~n------~-----~--v~p~I~elKrFpkss~lIVTgSGDg------------------tf~LWDIskg~llqsF~ 1099 (1329)
..++. . | -++.++.-=.+-....+|+-+++++ ++--.|+++|+.+=.|.
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~ 273 (488)
T cd00216 194 TEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQ 273 (488)
T ss_pred cCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEee
Confidence 21110 0 0 0011111001111233444444443 79999999999966654
Q ss_pred cCcccee-----E---ecc-----------ccccccccCcceEECcchhhhc--cccccccccCCCceeecCCCC--ccc
Q 000725 1100 AARASIY-----Q---FFP-----------INLFSWQRNGSVSMDASLELTN--TATTSLFSKHSEKSSFCPSVG--EDS 1156 (1329)
Q Consensus 1100 ahs~sV~-----s---fsP-----------~~s~S~d~~v~tfd~~s~d~~l--eatv~~fSgdvn~VsF~P~sG--eD~ 1156 (1329)
.-..+.+ + +.+ ...++.+|.+..++..+++..- .........+-+.| |.+..- .++
T Consensus 274 ~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~~~~~~~~~~v-yv~~~~~~~~~ 352 (488)
T cd00216 274 TTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVEQPMAYDPGLV-YLGAFHIPLGL 352 (488)
T ss_pred CCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeeccccccCCceE-EEccccccccC
Confidence 2111111 0 111 1135567778888888888771 11001111111212 222000 000
Q ss_pred ---eEEEEeeccCccchhhcccccccCCCCcceeEEEee-eccceecCCCCCCCceeeecCCCeEEeecCCCeEEEEEcc
Q 000725 1157 ---AIWLLVSTISDSDAQHNCMSRDCQKNPVRFWRLALL-VKNRVILGSPLDPRASAIGASSGLGIIGTNDGLVYAWELS 1232 (1329)
Q Consensus 1157 ---AiwLLVST~Sdd~t~~Dlra~~~~gH~n~~wRLALl-~K~siI~Gs~ldpra~afs~SG~~gfaGT~DGlVYmWDLs 1232 (1329)
..-+.+.+...-..+.|+. +| ...|+..+. ......+|.+. ........|+++|.|+.||.||..|..
T Consensus 353 ~~~~~~~~~~~~~G~l~AlD~~----tG--~~~W~~~~~~~~~~~~~g~~~--~~~~~~~~g~~v~~g~~dG~l~ald~~ 424 (488)
T cd00216 353 PPQKKKRCKKPGKGGLAALDPK----TG--KVVWEKREGTIRDSWNIGFPH--WGGSLATAGNLVFAGAADGYFRAFDAT 424 (488)
T ss_pred cccccCCCCCCCceEEEEEeCC----CC--cEeeEeeCCccccccccCCcc--cCcceEecCCeEEEECCCCeEEEEECC
Confidence 0000001112223334443 22 245554431 11112233310 112345788999999999999999999
Q ss_pred ccceeeeeecc
Q 000725 1233 SGNKLGILHHF 1243 (1329)
Q Consensus 1233 tG~kL~tL~~H 1243 (1329)
||+.+-+++--
T Consensus 425 tG~~lW~~~~~ 435 (488)
T cd00216 425 TGKELWKFRTP 435 (488)
T ss_pred CCceeeEEECC
Confidence 99999997653
No 292
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=94.56 E-value=0.13 Score=63.89 Aligned_cols=145 Identities=15% Similarity=0.195 Sum_probs=87.5
Q ss_pred ecCCCCCeeEecCCCccEEEEEccccce---eeeeccCccceeE--ecccc-----ccccccCcceEECcchhhhccccc
Q 000725 1067 RIPKCAPLVVGHNGFGEFGIWDISKRVL---VSRFSAARASIYQ--FFPIN-----LFSWQRNGSVSMDASLELTNTATT 1136 (1329)
Q Consensus 1067 rFpkss~lIVTgSGDgtf~LWDIskg~l---lqsF~ahs~sV~s--fsP~~-----s~S~d~~v~tfd~~s~d~~leatv 1136 (1329)
.-|.-+.-||+-|--.+| +|.+++-+- -=..++|+.-|+. |.|-. +||+|..++.|+.++.+.-
T Consensus 77 ~h~a~~~wiVsts~qkai-iwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p----- 150 (1081)
T KOG0309|consen 77 PHPAKPYWIVSTSNQKAI-IWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRP----- 150 (1081)
T ss_pred cCCCCceeEEecCcchhh-hhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcc-----
Confidence 445557778887777776 687766543 2234666666655 43332 5666666666666554432
Q ss_pred cccccCCCceeecCCCCccceEEEEeeccCccchhhcccccccCCCCcceeEEEeeeccceecCCCCCCCceeeecCCCe
Q 000725 1137 SLFSKHSEKSSFCPSVGEDSAIWLLVSTISDSDAQHNCMSRDCQKNPVRFWRLALLVKNRVILGSPLDPRASAIGASSGL 1216 (1329)
Q Consensus 1137 ~~fSgdvn~VsF~P~sGeD~AiwLLVST~Sdd~t~~Dlra~~~~gH~n~~wRLALl~K~siI~Gs~ldpra~afs~SG~~ 1216 (1329)
...--.|+=+- .-+....-..+
T Consensus 151 --------------------------------------------~ys~~~w~s~a--------------sqVkwnyk~p~ 172 (1081)
T KOG0309|consen 151 --------------------------------------------FYSTSSWRSAA--------------SQVKWNYKDPN 172 (1081)
T ss_pred --------------------------------------------eeeeecccccC--------------ceeeecccCcc
Confidence 22222222110 12444455567
Q ss_pred EEeecCCCeEEEEEccccc-eeeeeecccCceEEEEEecCCCCceEEEecCCCCCCccccCCCCCCCCcEEEeeeC
Q 000725 1217 GIIGTNDGLVYAWELSSGN-KLGILHHFKGGTVSCIATDDSGLQALAVAGDGPDGGRRQRDPRHGQNDHVRIWKMD 1291 (1329)
Q Consensus 1217 gfaGT~DGlVYmWDLstG~-kL~tL~~Heg~rVSCVA~dps~p~~~AsA~d~~d~~~r~~~~~~s~D~~VRiW~~~ 1291 (1329)
+.+.++.+.|++||+.+|. .+.++++|-- .|-.++.....-. ++|.| +.|++|+.|+.+
T Consensus 173 vlasshg~~i~vwd~r~gs~pl~s~K~~vs-~vn~~~fnr~~~s-------------~~~s~--~~d~tvkfw~y~ 232 (1081)
T KOG0309|consen 173 VLASSHGNDIFVWDLRKGSTPLCSLKGHVS-SVNSIDFNRFKYS-------------EIMSS--SNDGTVKFWDYS 232 (1081)
T ss_pred hhhhccCCceEEEeccCCCcceEEecccce-eeehHHHhhhhhh-------------hhccc--CCCCceeeeccc
Confidence 7788999999999999985 6888899877 6766666633321 45555 666666666554
No 293
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=94.53 E-value=0.042 Score=68.72 Aligned_cols=188 Identities=14% Similarity=0.178 Sum_probs=132.1
Q ss_pred cceeEEEEe-cCCeEEEecCCCeEEEEeccCcceEEEeeeeecCCCCcccceeEEEecCCCCCeeEecCCCcc--EEEEE
Q 000725 1012 DCVQCILVC-EPKHLIAVGESGKLHLWEMNSSWSAQVEECIIPINDCIYPCIVEMKRIPKCAPLVVGHNGFGE--FGIWD 1088 (1329)
Q Consensus 1012 ~sV~cIlVc-DpnhLVSaSdDGkL~IWDM~SgWsm~tee~Vi~~n~~v~p~I~elKrFpkss~lIVTgSGDgt--f~LWD 1088 (1329)
..--|+++. +-+||+-++--|.|+++.+.||--....- ||.+-|--+ .=.+++++.+|-+..+. -+|||
T Consensus 1102 ~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~n-------cH~SavT~v-ePs~dgs~~Ltsss~S~PlsaLW~ 1173 (1516)
T KOG1832|consen 1102 ALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVN-------CHQSAVTLV-EPSVDGSTQLTSSSSSSPLSALWD 1173 (1516)
T ss_pred cceeeEEeecCCceEEeeeccceEEEEEccCcccccccc-------ccccccccc-cccCCcceeeeeccccCchHHHhc
Confidence 567899999 99999999999999999999987666655 898888777 66778888888887776 78999
Q ss_pred ccc-cceeeeeccCccceeE----eccccccccccCcceEECcchhhh---ccccccccccCCCceeecCCCCccceEEE
Q 000725 1089 ISK-RVLVSRFSAARASIYQ----FFPINLFSWQRNGSVSMDASLELT---NTATTSLFSKHSEKSSFCPSVGEDSAIWL 1160 (1329)
Q Consensus 1089 Isk-g~llqsF~ahs~sV~s----fsP~~s~S~d~~v~tfd~~s~d~~---leatv~~fSgdvn~VsF~P~sGeD~AiwL 1160 (1329)
..+ +....+|.+-..-=|+ |.-+|++. .+..+||+-++... +..+ ..-+-..|-+.|+| .| ..|
T Consensus 1174 ~~s~~~~~Hsf~ed~~vkFsn~~q~r~~gt~~--d~a~~YDvqT~~~l~tylt~~-~~~~y~~n~a~FsP---~D--~LI 1245 (1516)
T KOG1832|consen 1174 ASSTGGPRHSFDEDKAVKFSNSLQFRALGTEA--DDALLYDVQTCSPLQTYLTDT-VTSSYSNNLAHFSP---CD--TLI 1245 (1516)
T ss_pred cccccCccccccccceeehhhhHHHHHhcccc--cceEEEecccCcHHHHhcCcc-hhhhhhccccccCC---Cc--ceE
Confidence 976 4446666654433332 33344443 56789999888776 3111 11223458899999 34 344
Q ss_pred EeeccCccchhhcccccccCCCCcceeEEEeeeccceecCCCCCCCceeeecCCCeEEeecCCCeEEEEEccccceeeee
Q 000725 1161 LVSTISDSDAQHNCMSRDCQKNPVRFWRLALLVKNRVILGSPLDPRASAIGASSGLGIIGTNDGLVYAWELSSGNKLGIL 1240 (1329)
Q Consensus 1161 LVST~Sdd~t~~Dlra~~~~gH~n~~wRLALl~K~siI~Gs~ldpra~afs~SG~~gfaGT~DGlVYmWDLstG~kL~tL 1240 (1329)
| ++.-+||.|..+ .+|.=-+.. .-++| .|-|+|.-+++-|+ +||+-|=+.|++.
T Consensus 1246 l-----ndGvLWDvR~~~-aIh~FD~ft-------~~~~G--------~FHP~g~eVIINSE-----IwD~RTF~lLh~V 1299 (1516)
T KOG1832|consen 1246 L-----NDGVLWDVRIPE-AIHRFDQFT-------DYGGG--------GFHPSGNEVIINSE-----IWDMRTFKLLHSV 1299 (1516)
T ss_pred e-----eCceeeeeccHH-HHhhhhhhe-------ecccc--------cccCCCceEEeech-----hhhhHHHHHHhcC
Confidence 4 567789999553 333322222 12344 49999999999987 8999887766655
Q ss_pred e
Q 000725 1241 H 1241 (1329)
Q Consensus 1241 ~ 1241 (1329)
-
T Consensus 1300 P 1300 (1516)
T KOG1832|consen 1300 P 1300 (1516)
T ss_pred c
Confidence 3
No 294
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=94.50 E-value=2.4 Score=48.34 Aligned_cols=231 Identities=12% Similarity=0.134 Sum_probs=130.8
Q ss_pred eeecCCCcEEEEecCccCccccCCCccccccccccccCCCCcEEEEEecCcceeeeEEEecc----cceeEEEEe-cCCe
Q 000725 950 ALFTPDGQYLVLLDSMKTPYCREGRSDCLCSTCTSHRLDENAVKIVKVKPGYVSVVAKLKTD----DCVQCILVC-EPKH 1024 (1329)
Q Consensus 950 lqFTPDGQ~LvLlgsik~p~CR~~~~dC~Cs~C~~s~seDNtVKIv~V~~G~vsll~kL~~h----~sV~cIlVc-Dpnh 1024 (1329)
+...+||+.|+ --+|++|-|=+.+-.|-+.+.|-.-. +.=+-++|+ |..-
T Consensus 3 ~~~~~~Gk~lA-------------------------i~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tl 57 (282)
T PF15492_consen 3 LALSSDGKLLA-------------------------ILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTL 57 (282)
T ss_pred eeecCCCcEEE-------------------------EEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcE
Confidence 56789999998 34899999999999999888887543 778899999 9999
Q ss_pred EEEecCCCeEEEEeccCcceEEEeeeeecCCCC----cccceeEEEecCC---CCC---eeEecCCCccEEEEEccccce
Q 000725 1025 LIAVGESGKLHLWEMNSSWSAQVEECIIPINDC----IYPCIVEMKRIPK---CAP---LVVGHNGFGEFGIWDISKRVL 1094 (1329)
Q Consensus 1025 LVSaSdDGkL~IWDM~SgWsm~tee~Vi~~n~~----v~p~I~elKrFpk---ss~---lIVTgSGDgtf~LWDIskg~l 1094 (1329)
|+-+...|+|.+.|+.. ++-|+|++..- .+.-|-.+ .|.+ +++ .++-=+++|.++=+=|+.|+.
T Consensus 58 La~a~S~G~i~vfdl~g-----~~lf~I~p~~~~~~d~~~Aiagl-~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~ 131 (282)
T PF15492_consen 58 LAYAESTGTIRVFDLMG-----SELFVIPPAMSFPGDLSDAIAGL-IFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTN 131 (282)
T ss_pred EEEEcCCCeEEEEeccc-----ceeEEcCcccccCCccccceeee-EeeccccccccceeEEEEeccceeeeEEEEcccC
Confidence 99999999999999654 45567755331 11222223 2322 222 344456777777777655432
Q ss_pred eeeeccCccceeE---ecccc--ccccccCcceEECcchhhhcc----ccccccccCCCceeecCCCCccceEEEEeecc
Q 000725 1095 VSRFSAARASIYQ---FFPIN--LFSWQRNGSVSMDASLELTNT----ATTSLFSKHSEKSSFCPSVGEDSAIWLLVSTI 1165 (1329)
Q Consensus 1095 lqsF~ahs~sV~s---fsP~~--s~S~d~~v~tfd~~s~d~~le----atv~~fSgdvn~VsF~P~sGeD~AiwLLVST~ 1165 (1329)
..--+.| .|+ +.|-+ +.-||..=+++-+++++.... +.....+. +-.++++= -+.+|.+.
T Consensus 132 q~y~e~h---sfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLta------WRiL~~~P--yyk~v~~~ 200 (282)
T PF15492_consen 132 QGYQENH---SFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTA------WRILSDSP--YYKQVTSS 200 (282)
T ss_pred CcceeeE---EEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceE------EEEcCCCC--cEEEcccc
Confidence 1111111 122 23334 223333335555665555410 00111111 11111111 12222222
Q ss_pred Cccch-------hhccc-cccc---CCCCcceeEEEeeeccceecCCCCCCCceeeecCCCeEEeecCCCeEEEEEcccc
Q 000725 1166 SDSDA-------QHNCM-SRDC---QKNPVRFWRLALLVKNRVILGSPLDPRASAIGASSGLGIIGTNDGLVYAWELSSG 1234 (1329)
Q Consensus 1166 Sdd~t-------~~Dlr-a~~~---~gH~n~~wRLALl~K~siI~Gs~ldpra~afs~SG~~gfaGT~DGlVYmWDLstG 1234 (1329)
.+..+ ++.+- .+-| .-.....++ ..+||+|..+++=.-+|.|.+|++=+=
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~k-------------------mSlSPdg~~La~ih~sG~lsLW~iPsL 261 (282)
T PF15492_consen 201 EDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFK-------------------MSLSPDGSLLACIHFSGSLSLWEIPSL 261 (282)
T ss_pred CccccccccccceeeccceeeeeccccCCCceEE-------------------EEECCCCCEEEEEEcCCeEEEEecCcc
Confidence 22221 11111 0000 011333444 567999999999999999999999877
Q ss_pred ceeeeee
Q 000725 1235 NKLGILH 1241 (1329)
Q Consensus 1235 ~kL~tL~ 1241 (1329)
+..+.+.
T Consensus 262 ~~~~~W~ 268 (282)
T PF15492_consen 262 RLQRSWK 268 (282)
T ss_pred hhhcccc
Confidence 7666554
No 295
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=94.20 E-value=7.3 Score=41.09 Aligned_cols=158 Identities=11% Similarity=0.044 Sum_probs=83.0
Q ss_pred EEEEe--cCCeEEEecCCCeEEEEeccCcceEEEeeeeecCCCCcccceeEEEecC-CCCCeeEecCCCccEEEEEcccc
Q 000725 1016 CILVC--EPKHLIAVGESGKLHLWEMNSSWSAQVEECIIPINDCIYPCIVEMKRIP-KCAPLVVGHNGFGEFGIWDISKR 1092 (1329)
Q Consensus 1016 cIlVc--DpnhLVSaSdDGkL~IWDM~SgWsm~tee~Vi~~n~~v~p~I~elKrFp-kss~lIVTgSGDgtf~LWDIskg 1092 (1329)
+++|. +.+-+++--..|+|+.||..++....... +....+ .+. +.+.++++.. +.++++|..+|
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~----------~~~~G~-~~~~~~g~l~v~~~--~~~~~~d~~~g 70 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDL----------PGPNGM-AFDRPDGRLYVADS--GGIAVVDPDTG 70 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEES----------SSEEEE-EEECTTSEEEEEET--TCEEEEETTTT
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEec----------CCCceE-EEEccCCEEEEEEc--CceEEEecCCC
Confidence 45555 44555555578999999999986654333 114444 555 5566666654 45566699998
Q ss_pred ceeeeeccCccceeEeccccccccccCcceEECcchhhhc-cccccccccCCCceeecCCCCccceEEEEeeccCccchh
Q 000725 1093 VLVSRFSAARASIYQFFPINLFSWQRNGSVSMDASLELTN-TATTSLFSKHSEKSSFCPSVGEDSAIWLLVSTISDSDAQ 1171 (1329)
Q Consensus 1093 ~llqsF~ahs~sV~sfsP~~s~S~d~~v~tfd~~s~d~~l-eatv~~fSgdvn~VsF~P~sGeD~AiwLLVST~Sdd~t~ 1171 (1329)
+...-+.......-...|.. ..++..+++|.+....... ....
T Consensus 71 ~~~~~~~~~~~~~~~~~~ND-~~vd~~G~ly~t~~~~~~~~~~~~----------------------------------- 114 (246)
T PF08450_consen 71 KVTVLADLPDGGVPFNRPND-VAVDPDGNLYVTDSGGGGASGIDP----------------------------------- 114 (246)
T ss_dssp EEEEEEEEETTCSCTEEEEE-EEE-TTS-EEEEEECCBCTTCGGS-----------------------------------
T ss_pred cEEEEeeccCCCcccCCCce-EEEcCCCCEEEEecCCCccccccc-----------------------------------
Confidence 66444443211101122221 1223334566554433321 0000
Q ss_pred hcccccccCCCCcceeEEEeeeccceecCCCCCCCceeeecCCCeEE-eecCCCeEEEEEcccc
Q 000725 1172 HNCMSRDCQKNPVRFWRLALLVKNRVILGSPLDPRASAIGASSGLGI-IGTNDGLVYAWELSSG 1234 (1329)
Q Consensus 1172 ~Dlra~~~~gH~n~~wRLALl~K~siI~Gs~ldpra~afs~SG~~gf-aGT~DGlVYmWDLstG 1234 (1329)
.+.||+..=.+-.++....--|+..++++.|++++ +-|..+.||.+|+...
T Consensus 115 ------------g~v~~~~~~~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~ 166 (246)
T PF08450_consen 115 ------------GSVYRIDPDGKVTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDAD 166 (246)
T ss_dssp ------------EEEEEEETTSEEEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETT
T ss_pred ------------cceEEECCCCeEEEEecCcccccceEECCcchheeecccccceeEEEecccc
Confidence 11111111100011111112267899999999775 8899999999999743
No 296
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=94.19 E-value=0.15 Score=59.02 Aligned_cols=103 Identities=8% Similarity=0.181 Sum_probs=78.4
Q ss_pred cccccCCCCcEEEEEecCcceeeeEEEecc-cceeEEEEe-cCCeEEEecCCCeEEEEeccCcceEEEeeeeecCCCCcc
Q 000725 982 CTSHRLDENAVKIVKVKPGYVSVVAKLKTD-DCVQCILVC-EPKHLIAVGESGKLHLWEMNSSWSAQVEECIIPINDCIY 1059 (1329)
Q Consensus 982 C~~s~seDNtVKIv~V~~G~vsll~kL~~h-~sV~cIlVc-DpnhLVSaSdDGkL~IWDM~SgWsm~tee~Vi~~n~~v~ 1059 (1329)
|+..+-..+-|-+-.+.--...++++|.+| ++|.|..|. -++.|.|+..|-++++||+.-.--+..+- .+|.
T Consensus 167 ~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el------~gh~ 240 (404)
T KOG1409|consen 167 YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYEL------QGHN 240 (404)
T ss_pred EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeee------ccch
Confidence 555555555555554444445789999999 999999999 89999999999999999976543333333 3566
Q ss_pred cceeEEEecCCCCCeeEecCCCccEEEEEccc
Q 000725 1060 PCIVEMKRIPKCAPLVVGHNGFGEFGIWDISK 1091 (1329)
Q Consensus 1060 p~I~elKrFpkss~lIVTgSGDgtf~LWDIsk 1091 (1329)
..+-++ -.-+-..++++++.||-|-+||..-
T Consensus 241 ~kV~~l-~~~~~t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 241 DKVQAL-SYAQHTRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred hhhhhh-hhhhhheeeeeccCCCeEEEEeccc
Confidence 666666 5566688999999999999999853
No 297
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=93.94 E-value=16 Score=43.00 Aligned_cols=279 Identities=15% Similarity=0.176 Sum_probs=167.2
Q ss_pred CCCcEEEEEec--CcceeeeEEEecccceeEEEEe-cCCeEEEecCC---CeEEE--EeccCcceEEEeeeeecCCCCcc
Q 000725 988 DENAVKIVKVK--PGYVSVVAKLKTDDCVQCILVC-EPKHLIAVGES---GKLHL--WEMNSSWSAQVEECIIPINDCIY 1059 (1329)
Q Consensus 988 eDNtVKIv~V~--~G~vsll~kL~~h~sV~cIlVc-DpnhLVSaSdD---GkL~I--WDM~SgWsm~tee~Vi~~n~~v~ 1059 (1329)
++.-|..|++. +|..+++.+.......+=+.|. +.++|.++-.+ |.+.- ||=++|...-.-...++ +..
T Consensus 14 ~s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~---g~~ 90 (346)
T COG2706 14 ESQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLP---GSP 90 (346)
T ss_pred CCCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccC---CCC
Confidence 36778899865 7888999999999999999999 88899998766 55543 44444555444443332 233
Q ss_pred cceeEEEecCCCCCeeEecCC-CccEEEEEccc-cce--eeeeccCccc----------eeE--ecccc--cccc---cc
Q 000725 1060 PCIVEMKRIPKCAPLVVGHNG-FGEFGIWDISK-RVL--VSRFSAARAS----------IYQ--FFPIN--LFSW---QR 1118 (1329)
Q Consensus 1060 p~I~elKrFpkss~lIVTgSG-Dgtf~LWDIsk-g~l--lqsF~ahs~s----------V~s--fsP~~--s~S~---d~ 1118 (1329)
||-+ .+.++++.|+++++ -|.+++.=|.. |.+ +..+..|... +.. |.|++ .+.. ..
T Consensus 91 p~yv---svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~D 167 (346)
T COG2706 91 PCYV---SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTD 167 (346)
T ss_pred CeEE---EECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCc
Confidence 3333 45788888888876 57889999866 666 3334455555 555 88888 2222 13
Q ss_pred CcceEECcchhhh-c-cccccccccCCCceeecCCCCccceEEEEeeccCccchhhcccccccCCCCcceeEEEeeeccc
Q 000725 1119 NGSVSMDASLELT-N-TATTSLFSKHSEKSSFCPSVGEDSAIWLLVSTISDSDAQHNCMSRDCQKNPVRFWRLALLVKNR 1196 (1329)
Q Consensus 1119 ~v~tfd~~s~d~~-l-eatv~~fSgdvn~VsF~P~sGeD~AiwLLVST~Sdd~t~~Dlra~~~~gH~n~~wRLALl~K~s 1196 (1329)
.|.+|+...+.+. . ...+.+=.|-+. +.|+| +=-..++|.-++.....|.+--. .|--.....+..|-++
T Consensus 168 ri~~y~~~dg~L~~~~~~~v~~G~GPRH-i~FHp----n~k~aY~v~EL~stV~v~~y~~~--~g~~~~lQ~i~tlP~d- 239 (346)
T COG2706 168 RIFLYDLDDGKLTPADPAEVKPGAGPRH-IVFHP----NGKYAYLVNELNSTVDVLEYNPA--VGKFEELQTIDTLPED- 239 (346)
T ss_pred eEEEEEcccCccccccccccCCCCCcce-EEEcC----CCcEEEEEeccCCEEEEEEEcCC--CceEEEeeeeccCccc-
Confidence 5778888866665 1 222222223333 78999 43455788888888888766521 0001112233332222
Q ss_pred eecCCCCCCC--ceeeecCCCeEEeec--CCCeEEEEEcccc-ceeeeeeccc--CceEEEEEecCCCCceEEEecCCCC
Q 000725 1197 VILGSPLDPR--ASAIGASSGLGIIGT--NDGLVYAWELSSG-NKLGILHHFK--GGTVSCIATDDSGLQALAVAGDGPD 1269 (1329)
Q Consensus 1197 iI~Gs~ldpr--a~afs~SG~~gfaGT--~DGlVYmWDLstG-~kL~tL~~He--g~rVSCVA~dps~p~~~AsA~d~~d 1269 (1329)
+-|. +. +..++++||++.+.- +| .|-++-+.-- .+|..+.... ++.=--..++|++.- +++|
T Consensus 240 -F~g~---~~~aaIhis~dGrFLYasNRg~d-sI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~-Liaa----- 308 (346)
T COG2706 240 -FTGT---NWAAAIHISPDGRFLYASNRGHD-SIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRF-LIAA----- 308 (346)
T ss_pred -cCCC---CceeEEEECCCCCEEEEecCCCC-eEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCE-EEEE-----
Confidence 2222 22 355789999998863 33 5666665543 3344332111 100112345555554 4444
Q ss_pred CCccccCCCCCCCCcEEEeeeCCCcceeecC
Q 000725 1270 GGRRQRDPRHGQNDHVRIWKMDPNLGCVRNS 1300 (1329)
Q Consensus 1270 ~~~r~~~~~~s~D~~VRiW~~~~~~~~~~~~ 1300 (1329)
+=..++|.|+..++.-||+---
T Consensus 309 ---------~q~sd~i~vf~~d~~TG~L~~~ 330 (346)
T COG2706 309 ---------NQKSDNITVFERDKETGRLTLL 330 (346)
T ss_pred ---------ccCCCcEEEEEEcCCCceEEec
Confidence 1334889999999999997543
No 298
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.94 E-value=0.3 Score=57.52 Aligned_cols=73 Identities=16% Similarity=0.107 Sum_probs=62.0
Q ss_pred ccceeeecCCCc-EEEEecCccCccccCCCccccccccccccCCCCcEEEEEecCcceeeeEEEecccceeEEEEe--cC
Q 000725 946 ERSCALFTPDGQ-YLVLLDSMKTPYCREGRSDCLCSTCTSHRLDENAVKIVKVKPGYVSVVAKLKTDDCVQCILVC--EP 1022 (1329)
Q Consensus 946 ersglqFTPDGQ-~LvLlgsik~p~CR~~~~dC~Cs~C~~s~seDNtVKIv~V~~G~vsll~kL~~h~sV~cIlVc--Dp 1022 (1329)
..-+|+|+|.-. +|+ ..+.+|+|||.++.+-. ++..+.+|..+-+..|+ |-
T Consensus 195 ~IrdlafSp~~~GLl~------------------------~asl~nkiki~dlet~~--~vssy~a~~~~wSC~wDlde~ 248 (463)
T KOG1645|consen 195 FIRDLAFSPFNEGLLG------------------------LASLGNKIKIMDLETSC--VVSSYIAYNQIWSCCWDLDER 248 (463)
T ss_pred hhhhhccCccccceee------------------------eeccCceEEEEecccce--eeeheeccCCceeeeeccCCc
Confidence 345789999988 455 67889999999999966 99999999999999999 78
Q ss_pred CeEEEecCCCeEEEEeccCcce
Q 000725 1023 KHLIAVGESGKLHLWEMNSSWS 1044 (1329)
Q Consensus 1023 nhLVSaSdDGkL~IWDM~SgWs 1044 (1329)
+||.++=+.|-|.|+||...-.
T Consensus 249 h~IYaGl~nG~VlvyD~R~~~~ 270 (463)
T KOG1645|consen 249 HVIYAGLQNGMVLVYDMRQPEG 270 (463)
T ss_pred ceeEEeccCceEEEEEccCCCc
Confidence 8888888999999999665443
No 299
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=93.67 E-value=0.077 Score=70.32 Aligned_cols=95 Identities=18% Similarity=0.275 Sum_probs=74.9
Q ss_pred ccCCCCcEEEEE-ecCcceeeeEEEecc-cceeEEEEe-cCCeEEEecCCCeEEEEeccCcceEEEeeeeecCCCCcccc
Q 000725 985 HRLDENAVKIVK-VKPGYVSVVAKLKTD-DCVQCILVC-EPKHLIAVGESGKLHLWEMNSSWSAQVEECIIPINDCIYPC 1061 (1329)
Q Consensus 985 s~seDNtVKIv~-V~~G~vsll~kL~~h-~sV~cIlVc-DpnhLVSaSdDGkL~IWDM~SgWsm~tee~Vi~~n~~v~p~ 1061 (1329)
.-++++.|-+|| ...+..++++ ++| .++.|++.. --.-|+|+|.+|-+.|||+.-.-.+-+.-
T Consensus 2310 ~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~------------ 2375 (2439)
T KOG1064|consen 2310 RSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQ------------ 2375 (2439)
T ss_pred cCCCCCcccchhcccCcccceee--eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhh------------
Confidence 456788899999 5666678999 899 888888877 66678999999999999976532222222
Q ss_pred eeEEEecCCCCCeeEecCCCccEEEEEccccceeeeec
Q 000725 1062 IVEMKRIPKCAPLVVGHNGFGEFGIWDISKRVLVSRFS 1099 (1329)
Q Consensus 1062 I~elKrFpkss~lIVTgSGDgtf~LWDIskg~llqsF~ 1099 (1329)
..- --+.+++|+..|+++||+++.-+++.+|.
T Consensus 2376 -----~~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2376 -----ALD-TREYFVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred -----hhh-hhheeeccCcccceEEEEccccchhhcCc
Confidence 112 36789999999999999999999998885
No 300
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=93.59 E-value=5.3 Score=48.75 Aligned_cols=113 Identities=12% Similarity=0.053 Sum_probs=74.6
Q ss_pred cceeeecCCCcEEEEecCccCccccCCCccccccccccccCCCCcEEEEEecCcceeeeEEEecccceeEEEEe-cCCeE
Q 000725 947 RSCALFTPDGQYLVLLDSMKTPYCREGRSDCLCSTCTSHRLDENAVKIVKVKPGYVSVVAKLKTDDCVQCILVC-EPKHL 1025 (1329)
Q Consensus 947 rsglqFTPDGQ~LvLlgsik~p~CR~~~~dC~Cs~C~~s~seDNtVKIv~V~~G~vsll~kL~~h~sV~cIlVc-DpnhL 1025 (1329)
-..++|+|-|.||+ + ..---|++|.=.++- .++.| -|+.|..+-++ ...||
T Consensus 35 ~~~~~~SP~G~~l~------------------------~-~~~~~V~~~~g~~~~--~l~~~-~~~~V~~~~fSP~~kYL 86 (561)
T COG5354 35 VAYVSESPLGTYLF------------------------S-EHAAGVECWGGPSKA--KLVRF-RHPDVKYLDFSPNEKYL 86 (561)
T ss_pred hhheeecCcchhee------------------------h-hhccceEEccccchh--heeee-ecCCceecccCccccee
Confidence 34689999999999 2 223457788766655 44443 46888888888 88888
Q ss_pred EEecCCCe---------------EEEEeccCcceEEEeeeeecCCCCcccceeEEEecCCCCCeeEecCCCccEEEEEcc
Q 000725 1026 IAVGESGK---------------LHLWEMNSSWSAQVEECIIPINDCIYPCIVEMKRIPKCAPLVVGHNGFGEFGIWDIS 1090 (1329)
Q Consensus 1026 VSaSdDGk---------------L~IWDM~SgWsm~tee~Vi~~n~~v~p~I~elKrFpkss~lIVTgSGDgtf~LWDIs 1090 (1329)
++=+.-+. +.|||..||-.|..+.++..+ . ..+-+-+|..++.+++== --.++.|.+|
T Consensus 87 ~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~--~---~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~- 159 (561)
T COG5354 87 VTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQP--Y---LGWPVLKFSIDDKYVARV-VGSSLYIHEI- 159 (561)
T ss_pred eeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCc--c---cccceeeeeecchhhhhh-ccCeEEEEec-
Confidence 88776665 999999999999998844433 1 133222555555554433 2235677777
Q ss_pred ccce
Q 000725 1091 KRVL 1094 (1329)
Q Consensus 1091 kg~l 1094 (1329)
+++.
T Consensus 160 t~n~ 163 (561)
T COG5354 160 TDNI 163 (561)
T ss_pred CCcc
Confidence 4443
No 301
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=93.44 E-value=0.35 Score=52.07 Aligned_cols=58 Identities=21% Similarity=0.376 Sum_probs=47.8
Q ss_pred cceecCCCCCCCceeeecCCCeEEeecCCCeEEEEEccccceeeee-------e-------cccCceEEEEEecCCC
Q 000725 1195 NRVILGSPLDPRASAIGASSGLGIIGTNDGLVYAWELSSGNKLGIL-------H-------HFKGGTVSCIATDDSG 1257 (1329)
Q Consensus 1195 ~siI~Gs~ldpra~afs~SG~~gfaGT~DGlVYmWDLstG~kL~tL-------~-------~Heg~rVSCVA~dps~ 1257 (1329)
+.|.+|+ .++.+...|.|+++=|.+|++|+||+.+++.+-.- . .... .|+.+.+++.+
T Consensus 7 P~i~Lgs----~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~-~i~~~~lt~~G 78 (219)
T PF07569_consen 7 PPIVLGS----PVSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSP-NITSCSLTSNG 78 (219)
T ss_pred CcEecCC----ceEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCC-cEEEEEEcCCC
Confidence 5678888 78999999999999999999999999999876554 2 1333 68888888666
No 302
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=93.41 E-value=6.9 Score=44.16 Aligned_cols=75 Identities=16% Similarity=0.211 Sum_probs=54.9
Q ss_pred cCCCcEEEEecCccCccccCCCccccccccccccCCCCcEEEEEecCcceeeeEEEecccceeEEEEe-cCCeEEEecCC
Q 000725 953 TPDGQYLVLLDSMKTPYCREGRSDCLCSTCTSHRLDENAVKIVKVKPGYVSVVAKLKTDDCVQCILVC-EPKHLIAVGES 1031 (1329)
Q Consensus 953 TPDGQ~LvLlgsik~p~CR~~~~dC~Cs~C~~s~seDNtVKIv~V~~G~vsll~kL~~h~sV~cIlVc-DpnhLVSaSdD 1031 (1329)
||||+++++.-. .++-+|. +-.+.+-|+++++|....+... ...++...+| |.+.||-+. +
T Consensus 1 S~d~~~~l~~~~-~~~~~r~--------------s~~~~y~i~d~~~~~~~~l~~~--~~~~~~~~~sP~g~~~~~v~-~ 62 (353)
T PF00930_consen 1 SPDGKFVLFATN-YTKQWRH--------------SFKGDYYIYDIETGEITPLTPP--PPKLQDAKWSPDGKYIAFVR-D 62 (353)
T ss_dssp -TTSSEEEEEEE-EEEESSS--------------EEEEEEEEEETTTTEEEESS-E--ETTBSEEEE-SSSTEEEEEE-T
T ss_pred CCCCCeEEEEEC-cEEeeee--------------ccceeEEEEecCCCceEECcCC--ccccccceeecCCCeeEEEe-c
Confidence 699999996555 4444561 3457899999999884444333 5889999999 999988887 7
Q ss_pred CeEEEEeccCcceE
Q 000725 1032 GKLHLWEMNSSWSA 1045 (1329)
Q Consensus 1032 GkL~IWDM~SgWsm 1045 (1329)
+.|+++++.++...
T Consensus 63 ~nly~~~~~~~~~~ 76 (353)
T PF00930_consen 63 NNLYLRDLATGQET 76 (353)
T ss_dssp TEEEEESSTTSEEE
T ss_pred CceEEEECCCCCeE
Confidence 99999998777433
No 303
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=93.40 E-value=0.26 Score=55.70 Aligned_cols=134 Identities=14% Similarity=0.195 Sum_probs=82.5
Q ss_pred cCCCCcEEEEEecCcceeeeEEEecc-cceeEEEEe-cCCeEEEecC-----CCeEEEEeccCcceEEEeeeeecCCCCc
Q 000725 986 RLDENAVKIVKVKPGYVSVVAKLKTD-DCVQCILVC-EPKHLIAVGE-----SGKLHLWEMNSSWSAQVEECIIPINDCI 1058 (1329)
Q Consensus 986 ~seDNtVKIv~V~~G~vsll~kL~~h-~sV~cIlVc-DpnhLVSaSd-----DGkL~IWDM~SgWsm~tee~Vi~~n~~v 1058 (1329)
+++|..+-++++.. -.-+..+.... -..-++.+| -.+.|-|.+- =+.+.+|++.. +.++.+-..+.+.
T Consensus 107 ~~~dg~~~v~s~~~-~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p---~~t~~~~~~~~~~- 181 (319)
T KOG4714|consen 107 GYADGSLAVFSTDK-DLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDP---IKTLIPSKKALDA- 181 (319)
T ss_pred cCCCceEEEEechH-HHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeecccc---ccccccccccccc-
Confidence 47888888888766 33344444433 333455556 3333333221 12334444332 2222211123332
Q ss_pred ccceeEEEecCCCCCeeEecCCCccEEEEEccccce-eeeeccCccceeE--ecccc-----ccccccCcceEECcc
Q 000725 1059 YPCIVEMKRIPKCAPLVVGHNGFGEFGIWDISKRVL-VSRFSAARASIYQ--FFPIN-----LFSWQRNGSVSMDAS 1127 (1329)
Q Consensus 1059 ~p~I~elKrFpkss~lIVTgSGDgtf~LWDIskg~l-lqsF~ahs~sV~s--fsP~~-----s~S~d~~v~tfd~~s 1127 (1329)
+-.+-+-|...|+++.|+.||.+.|||...+.- ++.+.+|...+++ |-|.. .+|=||.+-.||-++
T Consensus 182 ---v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 182 ---VTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred ---chhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 222225678899999999999999999998865 8889999999999 77765 667777777777664
No 304
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=93.26 E-value=0.07 Score=66.94 Aligned_cols=170 Identities=14% Similarity=0.135 Sum_probs=124.1
Q ss_pred ecCCCCCeeEecCCCccEEEEEccccceeeeeccCccceeEeccccccccccCcceEECcchhhh-c---cccccccccC
Q 000725 1067 RIPKCAPLVVGHNGFGEFGIWDISKRVLVSRFSAARASIYQFFPINLFSWQRNGSVSMDASLELT-N---TATTSLFSKH 1142 (1329)
Q Consensus 1067 rFpkss~lIVTgSGDgtf~LWDIskg~llqsF~ahs~sV~sfsP~~s~S~d~~v~tfd~~s~d~~-l---eatv~~fSgd 1142 (1329)
+|.-....|+-|+..|++.++.+.+|+-..+...|++.|+-+-|.-.+|.+=+-..|+.....+- + .+.+|.|.+|
T Consensus 1108 afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~~~Hsf~ed 1187 (1516)
T KOG1832|consen 1108 AFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTGGPRHSFDED 1187 (1516)
T ss_pred EeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhccccccCcccccccc
Confidence 78888999999999999999999999999999999999999888876666655555555444443 2 4567777764
Q ss_pred CCceeecCCCCccceEEEEeeccCccchhhccc----ccc-cCCCCcceeEEEeeeccceecCCCCCCCceeeecCCCeE
Q 000725 1143 SEKSSFCPSVGEDSAIWLLVSTISDSDAQHNCM----SRD-CQKNPVRFWRLALLVKNRVILGSPLDPRASAIGASSGLG 1217 (1329)
Q Consensus 1143 vn~VsF~P~sGeD~AiwLLVST~Sdd~t~~Dlr----a~~-~~gH~n~~wRLALl~K~siI~Gs~ldpra~afs~SG~~g 1217 (1329)
.- |.|+.. -+.-.+||--|+..+||.. +++ +++ +.|+..-.+.+.|+|+..++
T Consensus 1188 ~~-vkFsn~-----~q~r~~gt~~d~a~~YDvqT~~~l~tylt~----------------~~~~~y~~n~a~FsP~D~LI 1245 (1516)
T KOG1832|consen 1188 KA-VKFSNS-----LQFRALGTEADDALLYDVQTCSPLQTYLTD----------------TVTSSYSNNLAHFSPCDTLI 1245 (1516)
T ss_pred ce-eehhhh-----HHHHHhcccccceEEEecccCcHHHHhcCc----------------chhhhhhccccccCCCcceE
Confidence 33 778762 3333577888888889988 333 222 23333334568899999999
Q ss_pred EeecCCCeEEEEEccccceeeeeecccCceEEEEEecCCCCceEEEecC
Q 000725 1218 IIGTNDGLVYAWELSSGNKLGILHHFKGGTVSCIATDDSGLQALAVAGD 1266 (1329)
Q Consensus 1218 faGT~DGlVYmWDLstG~kL~tL~~Heg~rVSCVA~dps~p~~~AsA~d 1266 (1329)
+ +||+ +||+-+...++.+..|+. .. .=-+||.+.. +.+-+.
T Consensus 1246 l---ndGv--LWDvR~~~aIh~FD~ft~-~~-~G~FHP~g~e-VIINSE 1286 (1516)
T KOG1832|consen 1246 L---NDGV--LWDVRIPEAIHRFDQFTD-YG-GGGFHPSGNE-VIINSE 1286 (1516)
T ss_pred e---eCce--eeeeccHHHHhhhhhhee-cc-cccccCCCce-EEeech
Confidence 8 6786 699999999999887764 22 2258999998 555543
No 305
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=93.08 E-value=22 Score=41.94 Aligned_cols=249 Identities=10% Similarity=0.116 Sum_probs=135.8
Q ss_pred CCCCCceeecccccccccccccccccccccceeeecCCCcEEEEecCccCccccCCCccccccccccccCCCCcEEEEEe
Q 000725 918 RVGNPSCVGHTSVMLPFLKDNFGREIALERSCALFTPDGQYLVLLDSMKTPYCREGRSDCLCSTCTSHRLDENAVKIVKV 997 (1329)
Q Consensus 918 ~~~~p~~vg~t~~llp~~~~~~~~~~~~ersglqFTPDGQ~LvLlgsik~p~CR~~~~dC~Cs~C~~s~seDNtVKIv~V 997 (1329)
..|.=+|+++-++.-+.+ .-|.+.+|||||+ | .-.-.+.|.+.-+
T Consensus 74 ~~G~Lt~ln~~~~~g~~p------------~yvsvd~~g~~vf---------------------~--AnY~~g~v~v~p~ 118 (346)
T COG2706 74 DDGRLTFLNRQTLPGSPP------------CYVSVDEDGRFVF---------------------V--ANYHSGSVSVYPL 118 (346)
T ss_pred CCCeEEEeeccccCCCCC------------eEEEECCCCCEEE---------------------E--EEccCceEEEEEc
Confidence 345556666655444333 4588999999998 1 2233488888888
Q ss_pred cC-cceeeeEEEecc-cc----------eeEEEEe-cCCeEEEecC-CCeEEEEeccCcceEEEeeeeecCCCCccccee
Q 000725 998 KP-GYVSVVAKLKTD-DC----------VQCILVC-EPKHLIAVGE-SGKLHLWEMNSSWSAQVEECIIPINDCIYPCIV 1063 (1329)
Q Consensus 998 ~~-G~vsll~kL~~h-~s----------V~cIlVc-DpnhLVSaSd-DGkL~IWDM~SgWsm~tee~Vi~~n~~v~p~I~ 1063 (1329)
+. |.+-.+.-+..| +. +|+..++ |.++|++... --||.++|+.-|-..+...+...+-.|--+
T Consensus 119 ~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRH--- 195 (346)
T COG2706 119 QADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRH--- 195 (346)
T ss_pred ccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcce---
Confidence 55 877555445555 77 9999999 9999998853 247899998877776666633322222111
Q ss_pred EEEecCCCCCee-EecCCCccEEEEEcccc--ce--eeeeccCccceeEeccccccccccCcceEECcchhhhccccccc
Q 000725 1064 EMKRIPKCAPLV-VGHNGFGEFGIWDISKR--VL--VSRFSAARASIYQFFPINLFSWQRNGSVSMDASLELTNTATTSL 1138 (1329)
Q Consensus 1064 elKrFpkss~lI-VTgSGDgtf~LWDIskg--~l--lqsF~ahs~sV~sfsP~~s~S~d~~v~tfd~~s~d~~leatv~~ 1138 (1329)
+ .|.+++... +-+==++|+.+|+.... .+ +|+.. -.|.. ++ -.-|
T Consensus 196 -i-~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~--------tlP~d---F~-----------------g~~~ 245 (346)
T COG2706 196 -I-VFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTID--------TLPED---FT-----------------GTNW 245 (346)
T ss_pred -E-EEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeec--------cCccc---cC-----------------CCCc
Confidence 1 334433332 22334667777777663 22 33322 12222 00 0112
Q ss_pred cccCCCceeecCCCCccceEEEEeeccCccchhhcccccccCCCCcceeEEEeeeccceecCCCCCCCceeeecCCCeEE
Q 000725 1139 FSKHSEKSSFCPSVGEDSAIWLLVSTISDSDAQHNCMSRDCQKNPVRFWRLALLVKNRVILGSPLDPRASAIGASSGLGI 1218 (1329)
Q Consensus 1139 fSgdvn~VsF~P~sGeD~AiwLLVST~Sdd~t~~Dlra~~~~gH~n~~wRLALl~K~siI~Gs~ldpra~afs~SG~~gf 1218 (1329)
-+. +..+| | +.+|.+|-.-.+ .++=++-+..+| +|++.+ ...=.-.=||.-.|.++|++++
T Consensus 246 ~aa----Ihis~----d-GrFLYasNRg~d-sI~~f~V~~~~g------~L~~~~---~~~teg~~PR~F~i~~~g~~Li 306 (346)
T COG2706 246 AAA----IHISP----D-GRFLYASNRGHD-SIAVFSVDPDGG------KLELVG---ITPTEGQFPRDFNINPSGRFLI 306 (346)
T ss_pred eeE----EEECC----C-CCEEEEecCCCC-eEEEEEEcCCCC------EEEEEE---EeccCCcCCccceeCCCCCEEE
Confidence 222 66677 6 777776643222 221122222111 233321 2222234599999999999999
Q ss_pred eecCCC-eEEEEEc--cccceeeeeecccCceEEEEEe
Q 000725 1219 IGTNDG-LVYAWEL--SSGNKLGILHHFKGGTVSCIAT 1253 (1329)
Q Consensus 1219 aGT~DG-lVYmWDL--stG~kL~tL~~Heg~rVSCVA~ 1253 (1329)
+..+|. .|-++.. .||+---.........-.||.+
T Consensus 307 aa~q~sd~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv~f 344 (346)
T COG2706 307 AANQKSDNITVFERDKETGRLTLLGRYAVVPEPVCVKF 344 (346)
T ss_pred EEccCCCcEEEEEEcCCCceEEecccccCCCCcEEEEE
Confidence 887765 4444444 4444333333333334445543
No 306
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=92.65 E-value=0.74 Score=55.09 Aligned_cols=245 Identities=15% Similarity=0.132 Sum_probs=157.6
Q ss_pred cccceeeecCCCcEEEEecCccCccccCCCccccccccccccCC-CCcEEEEEecCcceeeeEEEecc--cceeEEEEe-
Q 000725 945 LERSCALFTPDGQYLVLLDSMKTPYCREGRSDCLCSTCTSHRLD-ENAVKIVKVKPGYVSVVAKLKTD--DCVQCILVC- 1020 (1329)
Q Consensus 945 ~ersglqFTPDGQ~LvLlgsik~p~CR~~~~dC~Cs~C~~s~se-DNtVKIv~V~~G~vsll~kL~~h--~sV~cIlVc- 1020 (1329)
....+|..+.||-++. +.++ |..+|+++|..=. ++.-++-. ++--|..-+
T Consensus 54 ~~I~sl~~S~dg~L~~------------------------Sv~d~Dhs~KvfDvEn~D--minmiKL~~lPg~a~wv~sk 107 (558)
T KOG0882|consen 54 GVILSLAVSYDGWLFR------------------------SVEDPDHSVKVFDVENFD--MINMIKLVDLPGFAEWVTSK 107 (558)
T ss_pred HHHHhhhccccceeEe------------------------eccCcccceeEEEeeccc--hhhhcccccCCCceEEecCC
Confidence 3567888899998877 6666 9999999988733 55333333 554444444
Q ss_pred -cCCeEEEec--CCCeEEEEeccCcceEEEeeeeecCCCCcccceeEEEecCCCCCeeEecCCCccEEEEEccc------
Q 000725 1021 -EPKHLIAVG--ESGKLHLWEMNSSWSAQVEECIIPINDCIYPCIVEMKRIPKCAPLVVGHNGFGEFGIWDISK------ 1091 (1329)
Q Consensus 1021 -DpnhLVSaS--dDGkL~IWDM~SgWsm~tee~Vi~~n~~v~p~I~elKrFpkss~lIVTgSGDgtf~LWDIsk------ 1091 (1329)
|+--++++| ++|+++|.|=-.+-.-...+ .+=|+..+..+ ++++.+.-+++.+--|-+--|--+-
T Consensus 108 Gd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~f-----kklH~sPV~~i-~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr 181 (558)
T KOG0882|consen 108 GDKISLIAVSLFKSGKIFVVDGFGDFCQDGYF-----KKLHFSPVKKI-RYNQAGDSAVSIDISGMVEYWSAEGPFQFPR 181 (558)
T ss_pred CCeeeeEEeecccCCCcEEECCcCCcCcccee-----cccccCceEEE-EeeccccceeeccccceeEeecCCCcccCcc
Confidence 666666555 79999999955444333333 12288889888 9999999999999999999998772
Q ss_pred cce---------eeeeccCcc--ceeEecccc----ccccccCcceEECcchhhhcc-ccccccccCCCceeecCCCCcc
Q 000725 1092 RVL---------VSRFSAARA--SIYQFFPIN----LFSWQRNGSVSMDASLELTNT-ATTSLFSKHSEKSSFCPSVGED 1155 (1329)
Q Consensus 1092 g~l---------lqsF~ahs~--sV~sfsP~~----s~S~d~~v~tfd~~s~d~~le-atv~~fSgdvn~VsF~P~sGeD 1155 (1329)
.++ +=.|.-... .-++|+|++ ..+=|..|++|.+.+++..++ ..+... ..+.|- .
T Consensus 182 ~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~------~~~q~k---s 252 (558)
T KOG0882|consen 182 TNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTD------AQYQPK---S 252 (558)
T ss_pred ccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchh------hhhccc---c
Confidence 222 111221111 123499988 667899999999999999852 111110 112220 0
Q ss_pred ceEEEEeeccCccchhhcccccccCCCCcceeEEEeeeccceecCCCCCCCceeeecCCCeEEeecCCCeEEEEEccccc
Q 000725 1156 SAIWLLVSTISDSDAQHNCMSRDCQKNPVRFWRLALLVKNRVILGSPLDPRASAIGASSGLGIIGTNDGLVYAWELSSGN 1235 (1329)
Q Consensus 1156 ~AiwLLVST~Sdd~t~~Dlra~~~~gH~n~~wRLALl~K~siI~Gs~ldpra~afs~SG~~gfaGT~DGlVYmWDLstG~ 1235 (1329)
...+.++.+.+ |+|. +++.==-|+.-- .-++|.-||.+++=||.=| |++-.|-|++
T Consensus 253 ------------~y~l~~VelgR---------Rmav-erelek~~~~~~-~~~~fdes~~flly~t~~g-ikvin~~tn~ 308 (558)
T KOG0882|consen 253 ------------PYGLMHVELGR---------RMAV-ERELEKHGSTVG-TNAVFDESGNFLLYGTILG-IKVINLDTNT 308 (558)
T ss_pred ------------ccccceeehhh---------hhhH-HhhHhhhcCccc-ceeEEcCCCCEEEeeccee-EEEEEeecCe
Confidence 11122222222 3332 111101111111 2367999999999999887 7999999999
Q ss_pred eeeeeecccCceEEEEEec
Q 000725 1236 KLGILHHFKGGTVSCIATD 1254 (1329)
Q Consensus 1236 kL~tL~~Heg~rVSCVA~d 1254 (1329)
++-+|-.-+++|+..++.-
T Consensus 309 v~ri~gk~e~ir~~~~sl~ 327 (558)
T KOG0882|consen 309 VVRILGKDEAIRFTRLSLY 327 (558)
T ss_pred EEEEeccchhhhhhhHHHH
Confidence 9999988888888877765
No 307
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=91.88 E-value=2.8 Score=48.01 Aligned_cols=218 Identities=13% Similarity=0.064 Sum_probs=141.7
Q ss_pred cCCCCCeeEecCCCccEEEEEccc-cceeeeeccCccceeE-------eccccccccccCcceEECcchhhhcccccccc
Q 000725 1068 IPKCAPLVVGHNGFGEFGIWDISK-RVLVSRFSAARASIYQ-------FFPINLFSWQRNGSVSMDASLELTNTATTSLF 1139 (1329)
Q Consensus 1068 Fpkss~lIVTgSGDgtf~LWDIsk-g~llqsF~ahs~sV~s-------fsP~~s~S~d~~v~tfd~~s~d~~leatv~~f 1139 (1329)
+.||+. |+-|+.-|.|.+|-..+ -..++-..-|..+|.= =+|...+|-|.++++++....-.+..-+++-+
T Consensus 81 ~~kc~~-la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~ 159 (344)
T KOG4532|consen 81 INKCVT-LADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNL 159 (344)
T ss_pred hccccE-EEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeecccc
Confidence 446554 55666789999999994 4457888888886543 56777889999999999877666533333322
Q ss_pred ccCCCceeecCCCCccceEEEEeeccCccchhhcccccccCCCCcceeEEEeeeccceecCCCCCCCceeeecCCCeEEe
Q 000725 1140 SKHSEKSSFCPSVGEDSAIWLLVSTISDSDAQHNCMSRDCQKNPVRFWRLALLVKNRVILGSPLDPRASAIGASSGLGII 1219 (1329)
Q Consensus 1140 Sgdvn~VsF~P~sGeD~AiwLLVST~Sdd~t~~Dlra~~~~gH~n~~wRLALl~K~siI~Gs~ldpra~afs~SG~~gfa 1219 (1329)
. .|+..++| | ..|+-+=..+...-.|-+- .-..|-+..|+++.-=-|+ .+.|+-..-.++.
T Consensus 160 ~--~ns~~~sn----d-~~~~~~Vgds~~Vf~y~id-------~~sey~~~~~~a~t~D~gF-----~~S~s~~~~~FAv 220 (344)
T KOG4532|consen 160 T--QNSLHYSN----D-PSWGSSVGDSRRVFRYAID-------DESEYIENIYEAPTSDHGF-----YNSFSENDLQFAV 220 (344)
T ss_pred c--eeeeEEcC----C-CceEEEecCCCcceEEEeC-------CccceeeeeEecccCCCce-----eeeeccCcceEEE
Confidence 2 56688888 7 7787655554444443322 1222333344444444444 4567777788999
Q ss_pred ecCCCeEEEEEccccceeeee-----ecccCceEEEEEecCCCCceEEEecCCCCCCccccCCCCCCC-CcEEEeeeC--
Q 000725 1220 GTNDGLVYAWELSSGNKLGIL-----HHFKGGTVSCIATDDSGLQALAVAGDGPDGGRRQRDPRHGQN-DHVRIWKMD-- 1291 (1329)
Q Consensus 1220 GT~DGlVYmWDLstG~kL~tL-----~~Heg~rVSCVA~dps~p~~~AsA~d~~d~~~r~~~~~~s~D-~~VRiW~~~-- 1291 (1329)
|+-||++-+||+-.=...... -+|+| .|-.+..++.++.-+..=+ ..-+-+.+-|-|-..| +-|+|-+..
T Consensus 221 ~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnG-a~R~c~Fsl~g~lDLLf~s-Ehfs~~hv~D~R~~~~~q~I~i~~d~~~ 298 (344)
T KOG4532|consen 221 VFQDGTCAIYDVRNMATPMAEISSTRPHHNG-AFRVCRFSLYGLLDLLFIS-EHFSRVHVVDTRNYVNHQVIVIPDDVER 298 (344)
T ss_pred EecCCcEEEEEecccccchhhhcccCCCCCC-ceEEEEecCCCcceEEEEe-cCcceEEEEEcccCceeeEEecCccccc
Confidence 999999999999653322211 25666 8999999988866555543 3455566667776666 556666544
Q ss_pred -----CCcceeecCCCCcccc
Q 000725 1292 -----PNLGCVRNSNGDSKFK 1307 (1329)
Q Consensus 1292 -----~~~~~~~~~~~~~~~~ 1307 (1329)
.+.|-+-+..|++-|-
T Consensus 299 ~~~tq~ifgt~f~~~n~s~~v 319 (344)
T KOG4532|consen 299 KHNTQHIFGTNFNNENESNDV 319 (344)
T ss_pred cccccccccccccCCCccccc
Confidence 3667776767776653
No 308
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=90.59 E-value=3.5 Score=50.21 Aligned_cols=159 Identities=13% Similarity=0.127 Sum_probs=111.8
Q ss_pred ccccceeee--cCCCcEEEEecCccCccccCCCccccccccccccCCCCcEEEEEecCcceeeeEEEecccceeEEEEe-
Q 000725 944 ALERSCALF--TPDGQYLVLLDSMKTPYCREGRSDCLCSTCTSHRLDENAVKIVKVKPGYVSVVAKLKTDDCVQCILVC- 1020 (1329)
Q Consensus 944 ~~ersglqF--TPDGQ~LvLlgsik~p~CR~~~~dC~Cs~C~~s~seDNtVKIv~V~~G~vsll~kL~~h~sV~cIlVc- 1020 (1329)
.|+-+++|| .+.|.||++|--.-| .-.+ +.+.++.|-|..... .++...+...+.|+++.|.
T Consensus 220 lfk~~~~qLkW~~~g~~ll~l~~t~~---ksnK----------syfgesnLyl~~~~e--~~i~V~~~~~~pVhdf~W~p 284 (561)
T COG5354 220 LFKVSGVQLKWQVLGKYLLVLVMTHT---KSNK----------SYFGESNLYLLRITE--RSIPVEKDLKDPVHDFTWEP 284 (561)
T ss_pred eEeecccEEEEecCCceEEEEEEEee---eccc----------ceeccceEEEEeecc--cccceeccccccceeeeecc
Confidence 367777776 899999986643222 2233 677889999999985 4577777556999999997
Q ss_pred cCCeEE--EecCCCeEEEEeccCcceEEEeeeeecCCCCcccceeEEEecCCCCCeeEecCCC---ccEEEEEcccccee
Q 000725 1021 EPKHLI--AVGESGKLHLWEMNSSWSAQVEECIIPINDCIYPCIVEMKRIPKCAPLVVGHNGF---GEFGIWDISKRVLV 1095 (1329)
Q Consensus 1021 DpnhLV--SaSdDGkL~IWDM~SgWsm~tee~Vi~~n~~v~p~I~elKrFpkss~lIVTgSGD---gtf~LWDIskg~ll 1095 (1329)
+.+..+ ++-++-++-+.|+... ..|.+|.-+ =..+ -|++..+.||..++| |.+-+||...+-.+
T Consensus 285 ~S~~F~vi~g~~pa~~s~~~lr~N-----l~~~~Pe~~-----rNT~-~fsp~~r~il~agF~nl~gni~i~~~~~rf~~ 353 (561)
T COG5354 285 LSSRFAVISGYMPASVSVFDLRGN-----LRFYFPEQK-----RNTI-FFSPHERYILFAGFDNLQGNIEIFDPAGRFKV 353 (561)
T ss_pred cCCceeEEecccccceeecccccc-----eEEecCCcc-----cccc-cccCcccEEEEecCCccccceEEeccCCceEE
Confidence 555544 4458889999998875 223333322 0112 688899999996665 67889999999986
Q ss_pred e-eeccCccceeEecccccc----------ccccCcceEECcch
Q 000725 1096 S-RFSAARASIYQFFPINLF----------SWQRNGSVSMDASL 1128 (1329)
Q Consensus 1096 q-sF~ahs~sV~sfsP~~s~----------S~d~~v~tfd~~s~ 1128 (1329)
. .|.|.+.++..++|++.| -.|-.+++|++.+-
T Consensus 354 ~~~~~~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~ 397 (561)
T COG5354 354 AGAFNGLNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGA 397 (561)
T ss_pred EEEeecCCceEeeccCCceEEEecCCCcccccCcceEEEEecCc
Confidence 6 999999998889999831 34445555555443
No 309
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=90.29 E-value=1 Score=52.48 Aligned_cols=211 Identities=11% Similarity=0.100 Sum_probs=125.2
Q ss_pred cCCeEEEecCCCeEEEEeccCcceEEEeeeeecCCCC---cccceeEEEecCCCCCeeEecCCCccEEEEEccccceeee
Q 000725 1021 EPKHLIAVGESGKLHLWEMNSSWSAQVEECIIPINDC---IYPCIVEMKRIPKCAPLVVGHNGFGEFGIWDISKRVLVSR 1097 (1329)
Q Consensus 1021 DpnhLVSaSdDGkL~IWDM~SgWsm~tee~Vi~~n~~---v~p~I~elKrFpkss~lIVTgSGDgtf~LWDIskg~llqs 1097 (1329)
++|+|+|+++. +|-|-|.+|=-..+.+- | +...-+. -.+-++|-+..-|+.+-+||+....-.-.
T Consensus 19 ~g~yiAs~~~y-rlviRd~~tlq~~qlf~-------cldki~yieW~----ads~~ilC~~yk~~~vqvwsl~Qpew~ck 86 (447)
T KOG4497|consen 19 CGNYIASLSRY-RLVIRDSETLQLHQLFL-------CLDKIVYIEWK----ADSCHILCVAYKDPKVQVWSLVQPEWYCK 86 (447)
T ss_pred CCCeeeeeeee-EEEEeccchhhHHHHHH-------HHHHhhheeee----ccceeeeeeeeccceEEEEEeecceeEEE
Confidence 89999999977 89999988854444443 2 1111111 12234455566788999999999888666
Q ss_pred ec-cCccceeE-ecccc-----ccccccCcceEECcchhhhc-cccccccccCCCceeecCCCCccceEEEEeeccCccc
Q 000725 1098 FS-AARASIYQ-FFPIN-----LFSWQRNGSVSMDASLELTN-TATTSLFSKHSEKSSFCPSVGEDSAIWLLVSTISDSD 1169 (1329)
Q Consensus 1098 F~-ahs~sV~s-fsP~~-----s~S~d~~v~tfd~~s~d~~l-eatv~~fSgdvn~VsF~P~sGeD~AiwLLVST~Sdd~ 1169 (1329)
+. +..+.+.. .+|++ ..++|-.|.+|+.-+-..-+ .-.++.+-+ ++|+| | +.+--+-+.-
T Consensus 87 Ideg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg----~~f~~----d-g~f~ai~sRr--- 154 (447)
T KOG4497|consen 87 IDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKG----YAFHP----D-GQFCAILSRR--- 154 (447)
T ss_pred eccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCcee----EEECC----C-Cceeeeeecc---
Confidence 64 44444444 99999 66788888999887665553 344555555 99999 4 3332222332
Q ss_pred hhhcccccccCCCCcceeEEEeeeccceecCC----CCCCCceeeecCCCeEEeecCCCeEEEEEccccceeeeeecccC
Q 000725 1170 AQHNCMSRDCQKNPVRFWRLALLVKNRVILGS----PLDPRASAIGASSGLGIIGTNDGLVYAWELSSGNKLGILHHFKG 1245 (1329)
Q Consensus 1170 t~~Dlra~~~~gH~n~~wRLALl~K~siI~Gs----~ldpra~afs~SG~~gfaGT~DGlVYmWDLstG~kL~tL~~Heg 1245 (1329)
-|-|+. ++-....|. +||. -+|-+-.--+|+|.-+ -+||.-=--++-..+.--|
T Consensus 155 DCkdyv----~i~~c~~W~---------ll~~f~~dT~DltgieWsPdg~~l---------aVwd~~Leykv~aYe~~lG 212 (447)
T KOG4497|consen 155 DCKDYV----QISSCKAWI---------LLKEFKLDTIDLTGIEWSPDGNWL---------AVWDNVLEYKVYAYERGLG 212 (447)
T ss_pred cHHHHH----HHHhhHHHH---------HHHhcCCCcccccCceECCCCcEE---------EEecchhhheeeeeeeccc
Confidence 233332 122233444 3343 1333334445555443 4666544444333333334
Q ss_pred ceEEEEEecCCCCceEEEecCCCCCCccccCCCCCCCCcEEE-----eeeCCCcc
Q 000725 1246 GTVSCIATDDSGLQALAVAGDGPDGGRRQRDPRHGQNDHVRI-----WKMDPNLG 1295 (1329)
Q Consensus 1246 ~rVSCVA~dps~p~~~AsA~d~~d~~~r~~~~~~s~D~~VRi-----W~~~~~~~ 1295 (1329)
|-.|+.+|...- +|++ |-||.+|| |+|-...+
T Consensus 213 --~k~v~wsP~~qf-lavG---------------syD~~lrvlnh~tWk~f~efl 249 (447)
T KOG4497|consen 213 --LKFVEWSPCNQF-LAVG---------------SYDQMLRVLNHFTWKPFGEFL 249 (447)
T ss_pred --eeEEEeccccce-EEee---------------ccchhhhhhceeeeeehhhhc
Confidence 778899987665 8888 56666654 88866554
No 310
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=90.19 E-value=0.8 Score=55.80 Aligned_cols=70 Identities=17% Similarity=0.208 Sum_probs=55.6
Q ss_pred CCCceeeecCCCeEEeecCCCeEEEEEccccceeeeeecccCceEEEEEecCCCCceEEEecCCCCCCccccCCCCCCCC
Q 000725 1204 DPRASAIGASSGLGIIGTNDGLVYAWELSSGNKLGILHHFKGGTVSCIATDDSGLQALAVAGDGPDGGRRQRDPRHGQND 1283 (1329)
Q Consensus 1204 dpra~afs~SG~~gfaGT~DGlVYmWDLstG~kL~tL~~Heg~rVSCVA~dps~p~~~AsA~d~~d~~~r~~~~~~s~D~ 1283 (1329)
-+..++.+++...++.|.+||.|.+||.-++....+ .+. ..++.||.||++.. +++| +.-|
T Consensus 261 ~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~--ka~-~~P~~iaWHp~gai-~~V~---------------s~qG 321 (545)
T PF11768_consen 261 QVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA--KAE-FIPTLIAWHPDGAI-FVVG---------------SEQG 321 (545)
T ss_pred cceEEecCcccceEEEEecCCeEEEEEcCCCeeeee--eec-ccceEEEEcCCCcE-EEEE---------------cCCc
Confidence 357899999999999999999999999988854433 444 47899999988876 8888 4556
Q ss_pred cEEEeeeCC
Q 000725 1284 HVRIWKMDP 1292 (1329)
Q Consensus 1284 ~VRiW~~~~ 1292 (1329)
.+.+|||.-
T Consensus 322 elQ~FD~AL 330 (545)
T PF11768_consen 322 ELQCFDMAL 330 (545)
T ss_pred eEEEEEeec
Confidence 677776653
No 311
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=89.54 E-value=43 Score=38.16 Aligned_cols=130 Identities=18% Similarity=0.162 Sum_probs=73.7
Q ss_pred ceeeecCCCcEEEEecCccCccccCCCccccccccccccCCCCcEEEEEecCcce-eeeEEEe---c--ccceeEEEEec
Q 000725 948 SCALFTPDGQYLVLLDSMKTPYCREGRSDCLCSTCTSHRLDENAVKIVKVKPGYV-SVVAKLK---T--DDCVQCILVCE 1021 (1329)
Q Consensus 948 sglqFTPDGQ~LvLlgsik~p~CR~~~~dC~Cs~C~~s~seDNtVKIv~V~~G~v-sll~kL~---~--h~sV~cIlVcD 1021 (1329)
++|+|.|||..+| .. ..+.|++++ +.|.. ..+..+. . ...+..|++-.
T Consensus 5 ~~~a~~pdG~l~v------------------------~e-~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p 58 (331)
T PF07995_consen 5 RSMAFLPDGRLLV------------------------AE-RSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHP 58 (331)
T ss_dssp EEEEEETTSCEEE------------------------EE-TTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-T
T ss_pred eEEEEeCCCcEEE------------------------Ee-CCceEEEEe-CCCcCcceecccccccccccCCcccceecc
Confidence 6899999999999 32 378888888 67775 4444442 2 27788988863
Q ss_pred ----CCeEEEecCC---------CeEEEEeccCc-ceEEEeeeee---cCCCCcccceeEEEecCCCCCeeEecCCCccE
Q 000725 1022 ----PKHLIAVGES---------GKLHLWEMNSS-WSAQVEECII---PINDCIYPCIVEMKRIPKCAPLVVGHNGFGEF 1084 (1329)
Q Consensus 1022 ----pnhLVSaSdD---------GkL~IWDM~Sg-Wsm~tee~Vi---~~n~~v~p~I~elKrFpkss~lIVTgSGDgtf 1084 (1329)
+++|..+... -+|.-|.+..+ -.....+.|+ |....-.+....| .|-+++.|.|+-+..+.
T Consensus 59 ~f~~n~~lYv~~t~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l-~fgpDG~LYvs~G~~~~- 136 (331)
T PF07995_consen 59 DFASNGYLYVYYTNADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGL-AFGPDGKLYVSVGDGGN- 136 (331)
T ss_dssp TCCCC-EEEEEEEEE-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEE-EE-TTSEEEEEEB-TTT-
T ss_pred ccCCCCEEEEEEEcccCCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccc-cCCCCCcEEEEeCCCCC-
Confidence 2444443331 25665666554 1112222222 4422333444446 77888888777655554
Q ss_pred EEEEccccceeeeeccCccceeEecccc
Q 000725 1085 GIWDISKRVLVSRFSAARASIYQFFPIN 1112 (1329)
Q Consensus 1085 ~LWDIskg~llqsF~ahs~sV~sfsP~~ 1112 (1329)
...-|.-..+.+.|+-+.|++
T Consensus 137 -------~~~~~~~~~~~G~ilri~~dG 157 (331)
T PF07995_consen 137 -------DDNAQDPNSLRGKILRIDPDG 157 (331)
T ss_dssp -------GGGGCSTTSSTTEEEEEETTS
T ss_pred -------cccccccccccceEEEecccC
Confidence 334455566667777777776
No 312
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=88.64 E-value=2.2 Score=50.26 Aligned_cols=110 Identities=18% Similarity=0.266 Sum_probs=81.3
Q ss_pred ccceeeecCCCcEEEEecCccCccccCCCccccccccccccCCCCcEEEEEecCcceeeeEEEecccceeEEEEe-cCCe
Q 000725 946 ERSCALFTPDGQYLVLLDSMKTPYCREGRSDCLCSTCTSHRLDENAVKIVKVKPGYVSVVAKLKTDDCVQCILVC-EPKH 1024 (1329)
Q Consensus 946 ersglqFTPDGQ~LvLlgsik~p~CR~~~~dC~Cs~C~~s~seDNtVKIv~V~~G~vsll~kL~~h~sV~cIlVc-Dpnh 1024 (1329)
--.++|+.+||-.|+ ..-..|..|.||||.+|.--++. -++-+++.=+.|+ |..+
T Consensus 197 pVtsmqwn~dgt~l~-----------------------tAS~gsssi~iWdpdtg~~~pL~-~~glgg~slLkwSPdgd~ 252 (445)
T KOG2139|consen 197 PVTSMQWNEDGTILV-----------------------TASFGSSSIMIWDPDTGQKIPLI-PKGLGGFSLLKWSPDGDV 252 (445)
T ss_pred eeeEEEEcCCCCEEe-----------------------ecccCcceEEEEcCCCCCccccc-ccCCCceeeEEEcCCCCE
Confidence 346899999999999 25678999999999999833333 2455999999999 9999
Q ss_pred EEEecCCCeEEEEeccCcceEEEeeeeecCCCCcccceeEEEecCCCCCeeEecCCCccEEEEEccccceeeeeccCccc
Q 000725 1025 LIAVGESGKLHLWEMNSSWSAQVEECIIPINDCIYPCIVEMKRIPKCAPLVVGHNGFGEFGIWDISKRVLVSRFSAARAS 1104 (1329)
Q Consensus 1025 LVSaSdDGkL~IWDM~SgWsm~tee~Vi~~n~~v~p~I~elKrFpkss~lIVTgSGDgtf~LWDIskg~llqsF~ahs~s 1104 (1329)
|.++.=|+...+|.-+-.|.- |. =+.|+|.-+=++|+-.-+.++=+|.+- -.
T Consensus 253 lfaAt~davfrlw~e~q~wt~--er-------------------------w~lgsgrvqtacWspcGsfLLf~~sgs-p~ 304 (445)
T KOG2139|consen 253 LFAATCDAVFRLWQENQSWTK--ER-------------------------WILGSGRVQTACWSPCGSFLLFACSGS-PR 304 (445)
T ss_pred EEEecccceeeeehhccccee--cc-------------------------eeccCCceeeeeecCCCCEEEEEEcCC-ce
Confidence 999999999999977766642 21 123344455567887777777776643 33
Q ss_pred eeE
Q 000725 1105 IYQ 1107 (1329)
Q Consensus 1105 V~s 1107 (1329)
+|+
T Consensus 305 lys 307 (445)
T KOG2139|consen 305 LYS 307 (445)
T ss_pred EEE
Confidence 454
No 313
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=88.57 E-value=5.3 Score=46.77 Aligned_cols=122 Identities=16% Similarity=0.176 Sum_probs=67.9
Q ss_pred eeeecCCCcEEEEecCccCccccCCCccccccccccccCCCCcEEEEEecCcceeeeEEEeccc--ceeEEEEecCCeEE
Q 000725 949 CALFTPDGQYLVLLDSMKTPYCREGRSDCLCSTCTSHRLDENAVKIVKVKPGYVSVVAKLKTDD--CVQCILVCEPKHLI 1026 (1329)
Q Consensus 949 glqFTPDGQ~LvLlgsik~p~CR~~~~dC~Cs~C~~s~seDNtVKIv~V~~G~vsll~kL~~h~--sV~cIlVcDpnhLV 1026 (1329)
.+.++|||+.+.--.++ |=|--+ |=-.-.|-|||.++ +++..+..==+ ..++ +.-++.+.
T Consensus 40 ~~~~spdgk~~y~a~T~---~sR~~r-----------G~RtDvv~~~D~~T--L~~~~EI~iP~k~R~~~--~~~~~~~~ 101 (342)
T PF06433_consen 40 NVALSPDGKTIYVAETF---YSRGTR-----------GERTDVVEIWDTQT--LSPTGEIEIPPKPRAQV--VPYKNMFA 101 (342)
T ss_dssp EEEE-TTSSEEEEEEEE---EEETTE-----------EEEEEEEEEEETTT--TEEEEEEEETTS-B--B--S--GGGEE
T ss_pred ceeECCCCCEEEEEEEE---Eecccc-----------ccceeEEEEEecCc--CcccceEecCCcchhee--cccccceE
Confidence 36689999999844433 333111 22234689999999 44555433222 3332 23566666
Q ss_pred EecCCCeEEEEeccCcceEEEee-----ee--ecCCCCcccceeEEEecCCCCCeeEecCCCccEEEEEcc-cccee
Q 000725 1027 AVGESGKLHLWEMNSSWSAQVEE-----CI--IPINDCIYPCIVEMKRIPKCAPLVVGHNGFGEFGIWDIS-KRVLV 1095 (1329)
Q Consensus 1027 SaSdDGkL~IWDM~SgWsm~tee-----~V--i~~n~~v~p~I~elKrFpkss~lIVTgSGDgtf~LWDIs-kg~ll 1095 (1329)
-+.+++.+.||.+...-++..-. ++ |+.-+|.. .||-...-..+.-+||++.--.+. .|+..
T Consensus 102 ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~-------iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~ 171 (342)
T PF06433_consen 102 LSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWL-------IYPSGNRGFSMLCGDGSLLTVTLDADGKEA 171 (342)
T ss_dssp E-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEE-------EEEEETTEEEEEETTSCEEEEEETSTSSEE
T ss_pred EccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEE-------EEecCCCceEEEecCCceEEEEECCCCCEe
Confidence 66788899999988777776554 11 13334410 122223345666788888887777 55543
No 314
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=87.18 E-value=12 Score=44.85 Aligned_cols=244 Identities=14% Similarity=0.097 Sum_probs=137.6
Q ss_pred EEecc-cceeEEEEecCCe--EEEecCCCeEEEEeccCcceEEEeeeeecCCCCcccceeEEEecCCCCCeeEecCCCcc
Q 000725 1007 KLKTD-DCVQCILVCEPKH--LIAVGESGKLHLWEMNSSWSAQVEECIIPINDCIYPCIVEMKRIPKCAPLVVGHNGFGE 1083 (1329)
Q Consensus 1007 kL~~h-~sV~cIlVcDpnh--LVSaSdDGkL~IWDM~SgWsm~tee~Vi~~n~~v~p~I~elKrFpkss~lIVTgSGDgt 1083 (1329)
-|-++ --++++++++-++ |+.++-+.+|.|-|+.|.-++..+. +. .++-+|.+++ +..|.|-.|.--|-
T Consensus 188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~--a~--~~~wSC~wDl----de~h~IYaGl~nG~ 259 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYI--AY--NQIWSCCWDL----DERHVIYAGLQNGM 259 (463)
T ss_pred cccccchhhhhhccCccccceeeeeccCceEEEEecccceeeehee--cc--CCceeeeecc----CCcceeEEeccCce
Confidence 34445 5688999996666 8999999999999999988877766 22 5678888888 55999999999999
Q ss_pred EEEEEccccce-eeeecc--CccceeEeccccccccccCcceEECcchhhh-----------c-ccccccccc-CCCcee
Q 000725 1084 FGIWDISKRVL-VSRFSA--ARASIYQFFPINLFSWQRNGSVSMDASLELT-----------N-TATTSLFSK-HSEKSS 1147 (1329)
Q Consensus 1084 f~LWDIskg~l-lqsF~a--hs~sV~sfsP~~s~S~d~~v~tfd~~s~d~~-----------l-eatv~~fSg-dvn~Vs 1147 (1329)
+-++|++.-.- ++.|.| -..+|..+.|.. +. .+|+++..--. . ..|-..+.. ....+.
T Consensus 260 VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~-----~n-~~f~~gglLv~~lt~l~f~ei~~s~~~~p~vlele~pG~c 333 (463)
T KOG1645|consen 260 VLVYDMRQPEGPLMELVANVTINPVHKIAPVQ-----PN-KIFTSGGLLVFALTVLQFYEIVFSAECLPCVLELEPPGIC 333 (463)
T ss_pred EEEEEccCCCchHhhhhhhhccCcceeecccC-----cc-ccccccceEEeeehhhhhhhhhccccCCCcccccCCCcce
Confidence 99999986443 666665 344555544432 22 44444433221 1 111111121 111111
Q ss_pred ecCCCCccceEEEEeeccCcc----chhhcccccccCCCCcceeEEEeeeccceecCCCCCCCce---eeecCC-C-eEE
Q 000725 1148 FCPSVGEDSAIWLLVSTISDS----DAQHNCMSRDCQKNPVRFWRLALLVKNRVILGSPLDPRAS---AIGASS-G-LGI 1218 (1329)
Q Consensus 1148 F~P~sGeD~AiwLLVST~Sdd----~t~~Dlra~~~~gH~n~~wRLALl~K~siI~Gs~ldpra~---afs~SG-~-~gf 1218 (1329)
..+ .-+....-+|++-.++- .+.-=.+.+.-+|||+..=| ..+||+.--++.+ -+.+-. . .+.
T Consensus 334 ism-qy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r-------~~~~Gs~~~kl~t~~ai~~~~~nn~iv~ 405 (463)
T KOG1645|consen 334 ISM-QYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKR-------RTYFGSKQTKLSTTQAIRAVEDNNYIVV 405 (463)
T ss_pred eee-eecCccceEEEEecCCCCCccceeeeeeeccccCceeeeec-------ccccCCcccccccccceeccccccEEEE
Confidence 111 01112234555555431 00000123334566654433 3344543222111 111111 1 223
Q ss_pred eecCCCeEEEEEccccceeeeeecccCceEEEEEecCCC-CceEEEecCCCCCCccccCCCCCCCCcEEEeee
Q 000725 1219 IGTNDGLVYAWELSSGNKLGILHHFKGGTVSCIATDDSG-LQALAVAGDGPDGGRRQRDPRHGQNDHVRIWKM 1290 (1329)
Q Consensus 1219 aGT~DGlVYmWDLstG~kL~tL~~Heg~rVSCVA~dps~-p~~~AsA~d~~d~~~r~~~~~~s~D~~VRiW~~ 1290 (1329)
-|..-+.+-|||..+++++++|.--+ .|.-|...++. +.=+|. =.|+.|+|++-
T Consensus 406 ~gd~tn~lil~D~~s~evvQ~l~~~e--pv~Dicp~~~n~~syLa~----------------LTd~~v~Iyk~ 460 (463)
T KOG1645|consen 406 VGDSTNELILQDPHSFEVVQTLALSE--PVLDICPNDTNGSSYLAL----------------LTDDRVHIYKN 460 (463)
T ss_pred ecCCcceeEEeccchhheeeecccCc--ceeecceeecCCcchhhh----------------eecceEEEEec
Confidence 34466889999999999999996543 47666665443 221222 35788888874
No 315
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=87.10 E-value=4.4 Score=40.90 Aligned_cols=61 Identities=13% Similarity=0.255 Sum_probs=54.0
Q ss_pred ccCCCCcEEEEEecCcceeeeEEEecccceeEEEEecCCeEEEecCCCeEEEEe-ccCcceEEEee
Q 000725 985 HRLDENAVKIVKVKPGYVSVVAKLKTDDCVQCILVCEPKHLIAVGESGKLHLWE-MNSSWSAQVEE 1049 (1329)
Q Consensus 985 s~seDNtVKIv~V~~G~vsll~kL~~h~sV~cIlVcDpnhLVSaSdDGkL~IWD-M~SgWsm~tee 1049 (1329)
.+|+|..|||++=.. ++.++..++.|.+++--.+.+++-+-+.|+|-+++ +..-|+++.-.
T Consensus 20 vGs~D~~IRvf~~~e----~~~Ei~e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~~RlWRiKSK~ 81 (111)
T PF14783_consen 20 VGSDDFEIRVFKGDE----IVAEITETDKVTSLCSLGGGRFAYALANGTVGVYDRSQRLWRIKSKN 81 (111)
T ss_pred EecCCcEEEEEeCCc----EEEEEecccceEEEEEcCCCEEEEEecCCEEEEEeCcceeeeeccCC
Confidence 789999999998654 89999999999999988889999999999999999 67778887655
No 316
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=86.95 E-value=65 Score=37.15 Aligned_cols=81 Identities=23% Similarity=0.303 Sum_probs=60.6
Q ss_pred CCCCceeeecCCCeEEeecCCCeEEEEEccccceeeeeecccCceEEEEEecCCCCceEEEecCCCCCCccccCCCCCCC
Q 000725 1203 LDPRASAIGASSGLGIIGTNDGLVYAWELSSGNKLGILHHFKGGTVSCIATDDSGLQALAVAGDGPDGGRRQRDPRHGQN 1282 (1329)
Q Consensus 1203 ldpra~afs~SG~~gfaGT~DGlVYmWDLstG~kL~tL~~Heg~rVSCVA~dps~p~~~AsA~d~~d~~~r~~~~~~s~D 1282 (1329)
+-|--.++..+|.+.++-.+.|+|++-|..||+.|.++.=-.. +|+|.++--..-+-+.+.+ -. --|
T Consensus 212 ~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~-qitsccFgGkn~d~~yvT~-----aa-------~~~ 278 (310)
T KOG4499|consen 212 LEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTP-QITSCCFGGKNLDILYVTT-----AA-------KFD 278 (310)
T ss_pred CCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCC-ceEEEEecCCCccEEEEEe-----hh-------ccc
Confidence 5677889999999999999999999999999999999998899 8999998722223233321 11 223
Q ss_pred CcEEEeeeCCCccee
Q 000725 1283 DHVRIWKMDPNLGCV 1297 (1329)
Q Consensus 1283 ~~VRiW~~~~~~~~~ 1297 (1329)
+-+|. .++||-||.
T Consensus 279 dp~~~-~~~p~aG~i 292 (310)
T KOG4499|consen 279 DPVRT-NTDPNAGTI 292 (310)
T ss_pred Cchhc-ccCCCCccE
Confidence 44554 467888886
No 317
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=86.85 E-value=3.2 Score=48.33 Aligned_cols=81 Identities=9% Similarity=0.122 Sum_probs=52.8
Q ss_pred CCceeecCCCCccceEEEEeeccCccchhhcccccccCCCCcceeEEEeeeccceecCCCCCCCc-------------ee
Q 000725 1143 SEKSSFCPSVGEDSAIWLLVSTISDSDAQHNCMSRDCQKNPVRFWRLALLVKNRVILGSPLDPRA-------------SA 1209 (1329)
Q Consensus 1143 vn~VsF~P~sGeD~AiwLLVST~Sdd~t~~Dlra~~~~gH~n~~wRLALl~K~siI~Gs~ldpra-------------~a 1209 (1329)
+.+..|+| .-..-++-||-...+.+.|+|-+. |+ -+....|--.+||-. .-
T Consensus 224 ItSaeFhp----~~cn~fmYSsSkG~Ikl~DlRq~a----------lc--dn~~klfe~~~D~v~~~ff~eivsSISD~k 287 (460)
T COG5170 224 ITSAEFHP----EMCNVFMYSSSKGEIKLNDLRQSA----------LC--DNSKKLFELTIDGVDVDFFEEIVSSISDFK 287 (460)
T ss_pred HhhcccCH----hHcceEEEecCCCcEEehhhhhhh----------hc--cCchhhhhhccCcccchhHHHHhhhhcceE
Confidence 44567999 447788889999999999999432 11 122333344445432 35
Q ss_pred eecCCCeEEeecCCCeEEEEEccccc-eeeee
Q 000725 1210 IGASSGLGIIGTNDGLVYAWELSSGN-KLGIL 1240 (1329)
Q Consensus 1210 fs~SG~~gfaGT~DGlVYmWDLstG~-kL~tL 1240 (1329)
|+++|||+.+-.. -+|.+||+.-.+ .+-|+
T Consensus 288 Fs~ngryIlsRdy-ltvkiwDvnm~k~pikTi 318 (460)
T COG5170 288 FSDNGRYILSRDY-LTVKIWDVNMAKNPIKTI 318 (460)
T ss_pred EcCCCcEEEEecc-ceEEEEecccccCCceee
Confidence 7899999887543 579999996543 34444
No 318
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.74 E-value=1.7 Score=56.22 Aligned_cols=150 Identities=17% Similarity=0.165 Sum_probs=102.5
Q ss_pred CcceeeeEEEecccceeEEEEe-cCCeEEEecCCCeEEEEeccCc--ceEEEeeeeecCCCCcccceeEEEecCCCCCee
Q 000725 999 PGYVSVVAKLKTDDCVQCILVC-EPKHLIAVGESGKLHLWEMNSS--WSAQVEECIIPINDCIYPCIVEMKRIPKCAPLV 1075 (1329)
Q Consensus 999 ~G~vsll~kL~~h~sV~cIlVc-DpnhLVSaSdDGkL~IWDM~Sg--Wsm~tee~Vi~~n~~v~p~I~elKrFpkss~lI 1075 (1329)
.|-..++....-...+..+.++ =..-||.+++.|.+-.-||... |..+ |.-+...+-.+ .||.++..+
T Consensus 75 H~q~~~l~~~~e~~~~~v~s~a~~~~~ivi~Ts~ghvl~~d~~~nL~~~~~--------ne~v~~~Vtsv-afn~dg~~l 145 (1206)
T KOG2079|consen 75 HGQPQVLAVHLEDIAAGVISSAIVVVPIVIGTSHGHVLLSDMTGNLGPLHQ--------NERVQGPVTSV-AFNQDGSLL 145 (1206)
T ss_pred ccchhhhHhhccCCCcceeeeeeeeeeEEEEcCchhhhhhhhhcccchhhc--------CCccCCcceee-EecCCCcee
Confidence 3443444444444666666677 4557888888999999998873 3233 33466667777 999999999
Q ss_pred EecCCCccEEEEEccccceeeeeccCccceeE------ecccc-ccccccCcceEECcchhhh---c-ccccccccc-CC
Q 000725 1076 VGHNGFGEFGIWDISKRVLVSRFSAARASIYQ------FFPIN-LFSWQRNGSVSMDASLELT---N-TATTSLFSK-HS 1143 (1329)
Q Consensus 1076 VTgSGDgtf~LWDIskg~llqsF~ahs~sV~s------fsP~~-s~S~d~~v~tfd~~s~d~~---l-eatv~~fSg-dv 1143 (1329)
+-|=++|-+.+||+..+..++.|.-|+.++.. ++..+ ..+-|.-|..|...-.... + ...+--++| +.
T Consensus 146 ~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gsf~~lv~nk~~L~~~~~kskcl~sg~~g 225 (1206)
T KOG2079|consen 146 LAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGSFWKLVFNKALLNMNTDKSKCLLSGKNG 225 (1206)
T ss_pred ccccCCCcEEEEEccCCcceeeeeecCCccceEEEEEEeCCCcEEEEccCCCceEEEEechhhhcccchHHHHhhcCCCC
Confidence 99999999999999999999999988888777 22222 3445555656655443322 2 234444566 44
Q ss_pred CceeecCCCCccce
Q 000725 1144 EKSSFCPSVGEDSA 1157 (1329)
Q Consensus 1144 n~VsF~P~sGeD~A 1157 (1329)
.-++-.|+++|.+|
T Consensus 226 ~Vis~s~i~~e~l~ 239 (1206)
T KOG2079|consen 226 EVISASPISDENLG 239 (1206)
T ss_pred ceEecccCCcchhh
Confidence 55777777777766
No 319
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.47 E-value=1 Score=58.18 Aligned_cols=77 Identities=12% Similarity=0.138 Sum_probs=60.3
Q ss_pred cceEEEEeeccCccchhhcccccccCCCCcceeEEEeeeccceecCCCCCCCceeeecCCCeEEeecCCCeEEEEEcccc
Q 000725 1155 DSAIWLLVSTISDSDAQHNCMSRDCQKNPVRFWRLALLVKNRVILGSPLDPRASAIGASSGLGIIGTNDGLVYAWELSSG 1234 (1329)
Q Consensus 1155 D~AiwLLVST~Sdd~t~~Dlra~~~~gH~n~~wRLALl~K~siI~Gs~ldpra~afs~SG~~gfaGT~DGlVYmWDLstG 1234 (1329)
-.+.||-++|...+.-.+|++-+=..-|.|.+=..+. ..+||+.+|+.+.+|.-||.|.|||...+
T Consensus 97 ~~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~V--------------tsvafn~dg~~l~~G~~~G~V~v~D~~~~ 162 (1206)
T KOG2079|consen 97 IVVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPV--------------TSVAFNQDGSLLLAGLGDGHVTVWDMHRA 162 (1206)
T ss_pred eeeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcc--------------eeeEecCCCceeccccCCCcEEEEEccCC
Confidence 4578999999999999999884432234444333332 56999999999999999999999999999
Q ss_pred ceeeeeecccC
Q 000725 1235 NKLGILHHFKG 1245 (1329)
Q Consensus 1235 ~kL~tL~~Heg 1245 (1329)
+.+..+--|.-
T Consensus 163 k~l~~i~e~~a 173 (1206)
T KOG2079|consen 163 KILKVITEHGA 173 (1206)
T ss_pred cceeeeeecCC
Confidence 99999854443
No 320
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=86.32 E-value=74 Score=37.17 Aligned_cols=266 Identities=15% Similarity=0.162 Sum_probs=145.6
Q ss_pred ccCCCCcEEEEEecCcceeeeEEEecccceeEEEEecCCeEEEecCCCeEEEEeccCc---ceEEEeeeeecCCCCcccc
Q 000725 985 HRLDENAVKIVKVKPGYVSVVAKLKTDDCVQCILVCEPKHLIAVGESGKLHLWEMNSS---WSAQVEECIIPINDCIYPC 1061 (1329)
Q Consensus 985 s~seDNtVKIv~V~~G~vsll~kL~~h~sV~cIlVcDpnhLVSaSdDGkL~IWDM~Sg---Wsm~tee~Vi~~n~~v~p~ 1061 (1329)
-+|-.+.++-||.++|.+---+.|..- +.|=++-=++.+|-+--.|.|..-+.+|| |--.+++-|--.
T Consensus 28 igSHs~~~~avd~~sG~~~We~ilg~R--iE~sa~vvgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~------- 98 (354)
T KOG4649|consen 28 IGSHSGIVIAVDPQSGNLIWEAILGVR--IECSAIVVGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVR------- 98 (354)
T ss_pred EecCCceEEEecCCCCcEEeehhhCce--eeeeeEEECCEEEEEEccCcEEEEEecchhheeeeeehhhhccc-------
Confidence 356778999999999995444444433 33333333556999999999999999999 655555511100
Q ss_pred eeEEEecCCCCCeeEecCCCccEEEEEccccceeeeeccCccceeE---eccccccccccCcceEECcchhhhccccccc
Q 000725 1062 IVEMKRIPKCAPLVVGHNGFGEFGIWDISKRVLVSRFSAARASIYQ---FFPINLFSWQRNGSVSMDASLELTNTATTSL 1138 (1329)
Q Consensus 1062 I~elKrFpkss~lIVTgSGDgtf~LWDIskg~llqsF~ahs~sV~s---fsP~~s~S~d~~v~tfd~~s~d~~leatv~~ 1138 (1329)
-.+-.++.+|--|+.|+++-.-|+.+.-++-.-.-. +.+|. +.|.. .++|.....-+.+.-+.-+
T Consensus 99 ----a~~d~~~glIycgshd~~~yalD~~~~~cVykskcg-G~~f~sP~i~~g~-------~sly~a~t~G~vlavt~~~ 166 (354)
T KOG4649|consen 99 ----AQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCG-GGTFVSPVIAPGD-------GSLYAAITAGAVLAVTKNP 166 (354)
T ss_pred ----eEEcCCCceEEEecCCCcEEEecccccceEEecccC-CceeccceecCCC-------ceEEEEeccceEEEEccCC
Confidence 145567899999999999999999999887664433 33443 55532 2555554444442111111
Q ss_pred cccCC--CceeecCCCCc--cceEEEEeeccCccchhhcccccccCCCCcceeEEEeeeccceecCCCCCCCceeeecCC
Q 000725 1139 FSKHS--EKSSFCPSVGE--DSAIWLLVSTISDSDAQHNCMSRDCQKNPVRFWRLALLVKNRVILGSPLDPRASAIGASS 1214 (1329)
Q Consensus 1139 fSgdv--n~VsF~P~sGe--D~AiwLLVST~Sdd~t~~Dlra~~~~gH~n~~wRLALl~K~siI~Gs~ldpra~afs~SG 1214 (1329)
.+.+. --.+|-|+-++ =++--+-++|-+.-..+||. +| --.||-+ +|.-|++|- +-..|+.
T Consensus 167 ~~~~~~w~~~~~~PiF~splcv~~sv~i~~VdG~l~~f~~-----sG--~qvwr~~--t~GpIf~~P------c~s~Ps~ 231 (354)
T KOG4649|consen 167 YSSTEFWAATRFGPIFASPLCVGSSVIITTVDGVLTSFDE-----SG--RQVWRPA--TKGPIFMEP------CESRPSC 231 (354)
T ss_pred CCcceehhhhcCCccccCceeccceEEEEEeccEEEEEcC-----CC--cEEEeec--CCCceeccc------ccCCCcc
Confidence 11100 00124442111 01112223334444444541 22 2356644 455555554 3344888
Q ss_pred CeEEeecCCCeEE--------EEEccccceeeeeecccCceEEEEEecCCCCceEEEecCCCCCCccccCCCCCCCCcEE
Q 000725 1215 GLGIIGTNDGLVY--------AWELSSGNKLGILHHFKGGTVSCIATDDSGLQALAVAGDGPDGGRRQRDPRHGQNDHVR 1286 (1329)
Q Consensus 1215 ~~gfaGT~DGlVY--------mWDLstG~kL~tL~~Heg~rVSCVA~dps~p~~~AsA~d~~d~~~r~~~~~~s~D~~VR 1286 (1329)
.-++.+.++--.+ +|+..+|..+ .|-.+|.-. .++-.-...+-.-++. .|.|+.|.
T Consensus 232 q~i~~~~~~Cf~~~~p~~ghL~w~~~~g~t~------------~vy~~p~l~--F~~h~~~~S~~~ll~~--~s~dgkv~ 295 (354)
T KOG4649|consen 232 QQISLENENCFCAPLPIAGHLLWATQSGTTL------------HVYLSPKLR--FDLHSPGISYPKLLRR--SSGDGKVM 295 (354)
T ss_pred eEEEEecCCeEEEeccccceEEEEecCCcEE------------EEEeCcccc--eeccCCCCcchhhhhh--hcCCCcEE
Confidence 8899998876555 5777776333 333332110 1111000111112222 38899998
Q ss_pred EeeeCCCcceeecCCCC
Q 000725 1287 IWKMDPNLGCVRNSNGD 1303 (1329)
Q Consensus 1287 iW~~~~~~~~~~~~~~~ 1303 (1329)
|--+.|.|. -|.+||.
T Consensus 296 il~~~~sl~-~~~s~~g 311 (354)
T KOG4649|consen 296 ILMTSKSLA-EISSNGG 311 (354)
T ss_pred EEEeccccc-ccccCCC
Confidence 888888764 3455543
No 321
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.97 E-value=4.7 Score=51.17 Aligned_cols=159 Identities=16% Similarity=0.206 Sum_probs=106.7
Q ss_pred ccCCCCcEEEEEecCcceeeeEEEecccceeEEEEe-c-----CCeEEEecCCCeEEEEeccCcceEEEeeeeecCCCCc
Q 000725 985 HRLDENAVKIVKVKPGYVSVVAKLKTDDCVQCILVC-E-----PKHLIAVGESGKLHLWEMNSSWSAQVEECIIPINDCI 1058 (1329)
Q Consensus 985 s~seDNtVKIv~V~~G~vsll~kL~~h~sV~cIlVc-D-----pnhLVSaSdDGkL~IWDM~SgWsm~tee~Vi~~n~~v 1058 (1329)
+||+|++|-|-++-++. ..+++.=+-.+..|.+- | .+++|++|+-| |.+.- -+|.-...-.+..+-.
T Consensus 88 sCS~DGkv~I~sl~~~~--~~~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~e--r~wlgnk~~v~l~~~e-- 160 (846)
T KOG2066|consen 88 SCSDDGKVVIGSLFTDD--EITQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSE--RNWLGNKDSVVLSEGE-- 160 (846)
T ss_pred EecCCCcEEEeeccCCc--cceeEecCCcceeEEeccchhhhhhhheeecCcce-EEEeh--hhhhcCccceeeecCc--
Confidence 99999999999998876 88888888888888887 5 67999999988 77653 4444333332222222
Q ss_pred ccceeEEEecCCCCCeeEecCCCccEEEEEccccceeeeeccCccceeE-ecccc---------ccccccCcceEECcch
Q 000725 1059 YPCIVEMKRIPKCAPLVVGHNGFGEFGIWDISKRVLVSRFSAARASIYQ-FFPIN---------LFSWQRNGSVSMDASL 1128 (1329)
Q Consensus 1059 ~p~I~elKrFpkss~lIVTgSGDgtf~LWDIskg~llqsF~ahs~sV~s-fsP~~---------s~S~d~~v~tfd~~s~ 1128 (1329)
..|+++| =-+++|+=.+.+| ++++|+.+++.+-.+.-+..+|-. .+|-. ---|-.+|.++++.
T Consensus 161 -G~I~~i~---W~g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVIGW~d~v~i~~I~-- 233 (846)
T KOG2066|consen 161 -GPIHSIK---WRGNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVIGWGDSVKICSIK-- 233 (846)
T ss_pred -cceEEEE---ecCcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEEecCCeEEEEEEe--
Confidence 3355542 1278999888777 799999999999999998877766 44444 22344556666665
Q ss_pred hhh-cc--ccccccccCCCceeecCCCCccce
Q 000725 1129 ELT-NT--ATTSLFSKHSEKSSFCPSVGEDSA 1157 (1329)
Q Consensus 1129 d~~-le--atv~~fSgdvn~VsF~P~sGeD~A 1157 (1329)
++. -+ ...+++...++-++.++.++-..|
T Consensus 234 ~~~s~~a~~~~~~~~~~V~~~s~f~~s~~isG 265 (846)
T KOG2066|consen 234 KRSSSEARSFRLPSLKKVEIVSHFETSFYISG 265 (846)
T ss_pred cccccccccccCCccceeeeEEEeeeeeeeec
Confidence 221 11 223444446666887775544433
No 322
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=85.93 E-value=75 Score=36.89 Aligned_cols=184 Identities=14% Similarity=0.136 Sum_probs=106.4
Q ss_pred ecCCCCCeeEecCCCccEEEEEccccceeeeeccCc-------cceeE--ecccc----------ccccccCcceEECcc
Q 000725 1067 RIPKCAPLVVGHNGFGEFGIWDISKRVLVSRFSAAR-------ASIYQ--FFPIN----------LFSWQRNGSVSMDAS 1127 (1329)
Q Consensus 1067 rFpkss~lIVTgSGDgtf~LWDIskg~llqsF~ahs-------~sV~s--fsP~~----------s~S~d~~v~tfd~~s 1127 (1329)
.+.++..+++-...-|+|+++|+..-++. .+.... ..|-. |.+-- .-.+.|..+.|-++.
T Consensus 50 ~WSpD~tlLa~a~S~G~i~vfdl~g~~lf-~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~ 128 (282)
T PF15492_consen 50 AWSPDCTLLAYAESTGTIRVFDLMGSELF-VIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSV 128 (282)
T ss_pred EECCCCcEEEEEcCCCeEEEEecccceeE-EcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEc
Confidence 88999999999999999999999976662 222211 11111 22222 223566666666644
Q ss_pred hhhhcccccccccc------CCCceeecCCCCccceEEEEeeccCccchhhcccccccCCCCcceeEEEeeeccceecCC
Q 000725 1128 LELTNTATTSLFSK------HSEKSSFCPSVGEDSAIWLLVSTISDSDAQHNCMSRDCQKNPVRFWRLALLVKNRVILGS 1201 (1329)
Q Consensus 1128 ~d~~leatv~~fSg------dvn~VsF~P~sGeD~AiwLLVST~Sdd~t~~Dlra~~~~gH~n~~wRLALl~K~siI~Gs 1201 (1329)
+.-+--+..+.|+. .++.+.|+| . -.-|||+............+.- .-..||+- -|.
T Consensus 129 gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p----~-h~LLlVgG~~~~~~~~s~a~~~----GLtaWRiL--------~~~ 191 (282)
T PF15492_consen 129 GTNQGYQENHSFSFSSHYPHGINSAVYHP----K-HRLLLVGGCEQNQDGMSKASSC----GLTAWRIL--------SDS 191 (282)
T ss_pred ccCCcceeeEEEEecccCCCceeEEEEcC----C-CCEEEEeccCCCCCcccccccc----CceEEEEc--------CCC
Confidence 43331112334443 577788888 3 3567777776665332222111 34567743 222
Q ss_pred CCCCCceeeecCCCeEEeecCCCe------EEEEEccccceeeeeecccCceEEEEEecCCCCceEEEecCCCCCCcccc
Q 000725 1202 PLDPRASAIGASSGLGIIGTNDGL------VYAWELSSGNKLGILHHFKGGTVSCIATDDSGLQALAVAGDGPDGGRRQR 1275 (1329)
Q Consensus 1202 ~ldpra~afs~SG~~gfaGT~DGl------VYmWDLstG~kL~tL~~Heg~rVSCVA~dps~p~~~AsA~d~~d~~~r~~ 1275 (1329)
|-...+ ..++|+. -.+|.+.+.+-.......++ .|--+.++|++.- +|+.
T Consensus 192 ----------Pyyk~v-~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d-~i~kmSlSPdg~~-La~i----------- 247 (282)
T PF15492_consen 192 ----------PYYKQV-TSSEDDITASSKRRGLLRIPSFKFFSRQGQEQD-GIFKMSLSPDGSL-LACI----------- 247 (282)
T ss_pred ----------CcEEEc-cccCccccccccccceeeccceeeeeccccCCC-ceEEEEECCCCCE-EEEE-----------
Confidence 111111 2333332 25677776655555556677 5889999988877 6666
Q ss_pred CCCCCCCCcEEEeeeCCCccee
Q 000725 1276 DPRHGQNDHVRIWKMDPNLGCV 1297 (1329)
Q Consensus 1276 ~~~~s~D~~VRiW~~~~~~~~~ 1297 (1329)
..+|.|-+|.+ |+|-+.
T Consensus 248 ----h~sG~lsLW~i-PsL~~~ 264 (282)
T PF15492_consen 248 ----HFSGSLSLWEI-PSLRLQ 264 (282)
T ss_pred ----EcCCeEEEEec-Ccchhh
Confidence 67788888876 455443
No 323
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=85.07 E-value=0.93 Score=51.53 Aligned_cols=93 Identities=18% Similarity=0.202 Sum_probs=63.4
Q ss_pred EEEEEecCcceeeeEEEecccceeEEEEe-cCCe-EEEecCCCeEEEEeccCcceEEEeeeeecCCCCcccceeEEEecC
Q 000725 992 VKIVKVKPGYVSVVAKLKTDDCVQCILVC-EPKH-LIAVGESGKLHLWEMNSSWSAQVEECIIPINDCIYPCIVEMKRIP 1069 (1329)
Q Consensus 992 VKIv~V~~G~vsll~kL~~h~sV~cIlVc-Dpnh-LVSaSdDGkL~IWDM~SgWsm~tee~Vi~~n~~v~p~I~elKrFp 1069 (1329)
.++|....-...+..++ +.++|.++..- -++| ++.+++||-+-+|||.-. .|++-+ .+-|-..|+|+-=-|
T Consensus 161 ~~a~~~~p~~t~~~~~~-~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~-~~p~S~-----l~ahk~~i~eV~FHp 233 (319)
T KOG4714|consen 161 FYANTLDPIKTLIPSKK-ALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNV-AMPVSL-----LKAHKAEIWEVHFHP 233 (319)
T ss_pred eeeeccccccccccccc-ccccchhhhCCcccccEEEEecCCCeEEEEEcccc-cchHHH-----HHHhhhhhhheeccC
Confidence 56666443222122222 22457777666 4444 456778999999999887 555544 223667788884458
Q ss_pred CCCCeeEecCCCccEEEEEccc
Q 000725 1070 KCAPLVVGHNGFGEFGIWDISK 1091 (1329)
Q Consensus 1070 kss~lIVTgSGDgtf~LWDIsk 1091 (1329)
+++..+.+++.||+.=.||-++
T Consensus 234 k~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 234 KNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred CCchheeEecCCCcEEEEcCCC
Confidence 8999999999999999999776
No 324
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=84.93 E-value=31 Score=43.05 Aligned_cols=87 Identities=14% Similarity=0.177 Sum_probs=54.6
Q ss_pred ccccccccccceeee---cCCCcEEEEecCccCccccCCCccccccccccccCCCCcEEEEEecCcceeeeEEEecc---
Q 000725 938 NFGREIALERSCALF---TPDGQYLVLLDSMKTPYCREGRSDCLCSTCTSHRLDENAVKIVKVKPGYVSVVAKLKTD--- 1011 (1329)
Q Consensus 938 ~~~~~~~~ersglqF---TPDGQ~LvLlgsik~p~CR~~~~dC~Cs~C~~s~seDNtVKIv~V~~G~vsll~kL~~h--- 1011 (1329)
+|++---|--.|+|| +|.-.||| +.-++-=+-..+|| +-..+.|||+.+|. ++..|...
T Consensus 240 ~f~r~~RF~Hp~Vq~idfSP~EkYLV---T~s~~p~~~~~~d~----------e~~~l~IWDI~tG~--lkrsF~~~~~~ 304 (698)
T KOG2314|consen 240 SFDRIQRFYHPGVQFIDFSPNEKYLV---TYSPEPIIVEEDDN----------EGQQLIIWDIATGL--LKRSFPVIKSP 304 (698)
T ss_pred cHHHHHhccCCCceeeecCCccceEE---EecCCccccCcccC----------CCceEEEEEccccc--hhcceeccCCC
Confidence 344434455666665 99999999 33344333333333 45789999999999 88887763
Q ss_pred -cceeEEEEe-cCCeEEEecCCCeEEEEecc
Q 000725 1012 -DCVQCILVC-EPKHLIAVGESGKLHLWEMN 1040 (1329)
Q Consensus 1012 -~sV~cIlVc-DpnhLVSaSdDGkL~IWDM~ 1040 (1329)
.---=+-|+ |-.|++-... -.|+|.+-+
T Consensus 305 ~~~WP~frWS~DdKy~Arm~~-~sisIyEtp 334 (698)
T KOG2314|consen 305 YLKWPIFRWSHDDKYFARMTG-NSISIYETP 334 (698)
T ss_pred ccccceEEeccCCceeEEecc-ceEEEEecC
Confidence 222234566 7777766654 557777733
No 325
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=84.93 E-value=51 Score=42.35 Aligned_cols=188 Identities=13% Similarity=0.128 Sum_probs=98.0
Q ss_pred CeEEEecCCCeEEEEeccCcceEEEee---eee-cCCC---------CcccceeEEEecCCCCCeeEecC---------C
Q 000725 1023 KHLIAVGESGKLHLWEMNSSWSAQVEE---CII-PIND---------CIYPCIVEMKRIPKCAPLVVGHN---------G 1080 (1329)
Q Consensus 1023 nhLVSaSdDGkL~IWDM~SgWsm~tee---~Vi-~~n~---------~v~p~I~elKrFpkss~lIVTgS---------G 1080 (1329)
++|+.++.||+|+=-|..||=..-.+- -|. .... ..++.++. .+.+|++++ .
T Consensus 261 ~rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~------~g~VIvG~~v~d~~~~~~~ 334 (764)
T TIGR03074 261 RRIILPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVA------GTTVVIGGRVADNYSTDEP 334 (764)
T ss_pred CEEEEecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEE------CCEEEEEecccccccccCC
Confidence 367677779999999999997775543 010 0000 01222222 145566543 2
Q ss_pred CccEEEEEccccceeeeeccCccceeEecccccccc-ccCcceEECcchhhhccccccccccCCCceeecCCCCccceEE
Q 000725 1081 FGEFGIWDISKRVLVSRFSAARASIYQFFPINLFSW-QRNGSVSMDASLELTNTATTSLFSKHSEKSSFCPSVGEDSAIW 1159 (1329)
Q Consensus 1081 Dgtf~LWDIskg~llqsF~ahs~sV~sfsP~~s~S~-d~~v~tfd~~s~d~~leatv~~fSgdvn~VsF~P~sGeD~Aiw 1159 (1329)
+|.++-.|+++|+++=.|+.-.-+.....+.+- .| .+..+.|...+.|..+. .-|.| .|.- +.+
T Consensus 335 ~G~I~A~Da~TGkl~W~~~~g~p~~~~~~~~g~-~~~~gg~n~W~~~s~D~~~g------------lvy~p-tGn~-~pd 399 (764)
T TIGR03074 335 SGVIRAFDVNTGALVWAWDPGNPDPTAPPAPGE-TYTRNTPNSWSVASYDEKLG------------LVYLP-MGNQ-TPD 399 (764)
T ss_pred CcEEEEEECCCCcEeeEEecCCCCcccCCCCCC-EeccCCCCccCceEEcCCCC------------eEEEe-CCCc-ccc
Confidence 688999999999999888742111111111111 12 14456666666666521 11111 1111 000
Q ss_pred EEee-------ccCccchhhccc----ccccCCCCcceeEEEeeeccceecCCCCCCCceeeec-CCC---eEEeecCCC
Q 000725 1160 LLVS-------TISDSDAQHNCM----SRDCQKNPVRFWRLALLVKNRVILGSPLDPRASAIGA-SSG---LGIIGTNDG 1224 (1329)
Q Consensus 1160 LLVS-------T~Sdd~t~~Dlr----a~~~~gH~n~~wRLALl~K~siI~Gs~ldpra~afs~-SG~---~gfaGT~DG 1224 (1329)
++-+ .-.+..-..|.. .=+||..|.-.|-.. .+--|...++.. +|+ .++.++-+|
T Consensus 400 ~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~~~hD~WD~D----------~~~~p~L~d~~~~~G~~~~~v~~~~K~G 469 (764)
T TIGR03074 400 QWGGDRTPADEKYSSSLVALDATTGKERWVFQTVHHDLWDMD----------VPAQPSLVDLPDADGTTVPALVAPTKQG 469 (764)
T ss_pred ccCCccccCcccccceEEEEeCCCCceEEEecccCCcccccc----------ccCCceEEeeecCCCcEeeEEEEECCCC
Confidence 0000 011222223333 112333333334322 122355566665 553 899999999
Q ss_pred eEEEEEccccceeeeee
Q 000725 1225 LVYAWELSSGNKLGILH 1241 (1329)
Q Consensus 1225 lVYmWDLstG~kL~tL~ 1241 (1329)
.+|+.|-.||+.|-...
T Consensus 470 ~~~vlDr~tG~~l~~~~ 486 (764)
T TIGR03074 470 QIYVLDRRTGEPIVPVE 486 (764)
T ss_pred EEEEEECCCCCEEeece
Confidence 99999999999887653
No 326
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=84.63 E-value=9.8 Score=44.57 Aligned_cols=203 Identities=12% Similarity=0.085 Sum_probs=133.8
Q ss_pred cccceeeeeeccCCeEEEEEEeccccccceEEEEEEeeeCCCCCCCCceeecccccccccccccccccccccceeeecCC
Q 000725 876 PLPILSVLLSTTGDKIYVCVSCGFLVDKKRTLFIYTVDIQEPRVGNPSCVGHTSVMLPFLKDNFGREIALERSCALFTPD 955 (1329)
Q Consensus 876 pmpVlsv~l~t~~~ei~IcVlCG~L~~~~r~Lf~Yki~i~~~~~~~p~~vg~t~~llp~~~~~~~~~~~~ersglqFTPD 955 (1329)
+-|+.|-.-|.+...|-+|- ....+-+|++.= .-|..-+||.- +--.-.+||.+.|-
T Consensus 10 ~~pitchAwn~drt~iAv~~-------~~~evhiy~~~~-----~~~w~~~htls-----------~Hd~~vtgvdWap~ 66 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSP-------NNHEVHIYSMLG-----ADLWEPAHTLS-----------EHDKIVTGVDWAPK 66 (361)
T ss_pred cCceeeeeecCCCceEEecc-------CCceEEEEEecC-----CCCceeceehh-----------hhCcceeEEeecCC
Confidence 34566655555555554432 222344565532 33455666642 12234678999999
Q ss_pred CcEEEEecCccCccccCCCccccccccccccCCCCcEEEEEe-cCcceeeeEEEecc-cceeEEEEe-cCCeEEEecCCC
Q 000725 956 GQYLVLLDSMKTPYCREGRSDCLCSTCTSHRLDENAVKIVKV-KPGYVSVVAKLKTD-DCVQCILVC-EPKHLIAVGESG 1032 (1329)
Q Consensus 956 GQ~LvLlgsik~p~CR~~~~dC~Cs~C~~s~seDNtVKIv~V-~~G~vsll~kL~~h-~sV~cIlVc-DpnhLVSaSdDG 1032 (1329)
+..|| +|++|+---+|+. ..|.--+.--|.-+ ..+.||-|. -.|.++.+|.-+
T Consensus 67 snrIv------------------------tcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar 122 (361)
T KOG1523|consen 67 SNRIV------------------------TCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGAR 122 (361)
T ss_pred CCcee------------------------EccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCcc
Confidence 99999 9999999999998 55543333344455 999999999 778888889899
Q ss_pred eEEEEeccC--cceEEEeeeeecCCCCcccceeEEEecCCCCCeeEecCCCccEEEEE-----cc-------------cc
Q 000725 1033 KLHLWEMNS--SWSAQVEECIIPINDCIYPCIVEMKRIPKCAPLVVGHNGFGEFGIWD-----IS-------------KR 1092 (1329)
Q Consensus 1033 kL~IWDM~S--gWsm~tee~Vi~~n~~v~p~I~elKrFpkss~lIVTgSGDgtf~LWD-----Is-------------kg 1092 (1329)
.|-||-... .|=+...- -+=+-+.|.+| ...+..=+++.||.|+.|+++- |+ =|
T Consensus 123 ~isVcy~E~ENdWWVsKhi-----kkPirStv~sl-dWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG 196 (361)
T KOG1523|consen 123 LISVCYYEQENDWWVSKHI-----KKPIRSTVTSL-DWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFG 196 (361)
T ss_pred EEEEEEEecccceehhhhh-----CCccccceeee-eccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHH
Confidence 999997432 34222211 01144567777 7777788999999999999973 22 36
Q ss_pred ceeeeeccCccceeE--ecccc----ccccccCcceEECcchhhh
Q 000725 1093 VLVSRFSAARASIYQ--FFPIN----LFSWQRNGSVSMDASLELT 1131 (1329)
Q Consensus 1093 ~llqsF~ahs~sV~s--fsP~~----s~S~d~~v~tfd~~s~d~~ 1131 (1329)
++++.|..-.+=|.. |+|.+ --+.|+.+.+.+......+
T Consensus 197 ~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~ 241 (361)
T KOG1523|consen 197 QLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSER 241 (361)
T ss_pred HHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchh
Confidence 778888766666666 88888 2345666666666655433
No 327
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=84.60 E-value=1.3 Score=49.32 Aligned_cols=169 Identities=14% Similarity=0.100 Sum_probs=105.4
Q ss_pred EEEccccceeeeeccCccceeEecccc------ccccccCcceEECcchhhh-c----cccccccccCCCceeecCCCCc
Q 000725 1086 IWDISKRVLVSRFSAARASIYQFFPIN------LFSWQRNGSVSMDASLELT-N----TATTSLFSKHSEKSSFCPSVGE 1154 (1329)
Q Consensus 1086 LWDIskg~llqsF~ahs~sV~sfsP~~------s~S~d~~v~tfd~~s~d~~-l----eatv~~fSgdvn~VsF~P~sGe 1154 (1329)
.||+-.-+..=.|+...+.|.+..-++ .-|-++.++.+..+-.... + .-+.+.+-+
T Consensus 2 ~~dl~~~~~~~dk~~~~d~i~~~~t~~~~~~l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~~~v~~------------- 68 (238)
T KOG2444|consen 2 EWDLGANNFGIDKHPSTDLIAAGLTDGHLHLLRATSADGLVRERKVRKHKESCRSERFIDEGQRVVT------------- 68 (238)
T ss_pred cccccccccceeccchhhhhhhcchhhhhhhhccccCCcccccchhhhhhhhhhhhhhhhcceeecc-------------
Confidence 588877777766766666665522222 3356777888877766555 1 111221111
Q ss_pred cceEEEEeeccCccchhhcccccccCCCCcceeEEEeeeccceecCCCCCCCceeeecCCCeEEeecCCCeEEEEEcccc
Q 000725 1155 DSAIWLLVSTISDSDAQHNCMSRDCQKNPVRFWRLALLVKNRVILGSPLDPRASAIGASSGLGIIGTNDGLVYAWELSSG 1234 (1329)
Q Consensus 1155 D~AiwLLVST~Sdd~t~~Dlra~~~~gH~n~~wRLALl~K~siI~Gs~ldpra~afs~SG~~gfaGT~DGlVYmWDLstG 1234 (1329)
.+.-++|+|.....++|..-+- .- +. ++.-.-.++|-.|. ...-++.++-+|..||+||.|-+.=+
T Consensus 69 -~~~~~~vG~~dg~v~~~n~n~~--g~-~~---d~~~s~~e~i~~~I-------p~~~~~~~~c~~~~dg~ir~~n~~p~ 134 (238)
T KOG2444|consen 69 -ASAKLMVGTSDGAVYVFNWNLE--GA-HS---DRVCSGEESIDLGI-------PNGRDSSLGCVGAQDGRIRACNIKPN 134 (238)
T ss_pred -cCceEEeecccceEEEecCCcc--ch-HH---Hhhhcccccceecc-------ccccccceeEEeccCCceeeeccccC
Confidence 2556889999988888554411 00 11 11112233333332 33445558999999999999999999
Q ss_pred ceeeeeecccCceEEEEEecCCCCceEEEecCCCCCCccccCCCCCCCCcEEEeeeCCCcc
Q 000725 1235 NKLGILHHFKGGTVSCIATDDSGLQALAVAGDGPDGGRRQRDPRHGQNDHVRIWKMDPNLG 1295 (1329)
Q Consensus 1235 ~kL~tL~~Heg~rVSCVA~dps~p~~~AsA~d~~d~~~r~~~~~~s~D~~VRiW~~~~~~~ 1295 (1329)
++++..-+|+..-++-.. .++ +|.-+.+|.- |-|+.++-|.|.+..-
T Consensus 135 k~~g~~g~h~~~~~e~~i---------vv~---sd~~i~~a~~--S~d~~~k~W~ve~~~d 181 (238)
T KOG2444|consen 135 KVLGYVGQHNFESGEELI---------VVG---SDEFLKIADT--SHDRVLKKWNVEKIKD 181 (238)
T ss_pred ceeeeeccccCCCcceeE---------Eec---CCceEEeecc--ccchhhhhcchhhhhc
Confidence 999999888863333322 223 4566677766 8899999999988764
No 328
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=82.80 E-value=6.9 Score=48.91 Aligned_cols=114 Identities=18% Similarity=0.204 Sum_probs=81.2
Q ss_pred EEecCccCccccCCCcccccccccc---ccCCCCcEEEEEecCcceeeeEEEecccceeEEEEe---cCCeEEEecCCCe
Q 000725 960 VLLDSMKTPYCREGRSDCLCSTCTS---HRLDENAVKIVKVKPGYVSVVAKLKTDDCVQCILVC---EPKHLIAVGESGK 1033 (1329)
Q Consensus 960 vLlgsik~p~CR~~~~dC~Cs~C~~---s~seDNtVKIv~V~~G~vsll~kL~~h~sV~cIlVc---DpnhLVSaSdDGk 1033 (1329)
.+.+++.|+-.. -+--+||..+- .-+.-..+.|||.+.|..+--.+|..++.|+++=|+ |...|+|+|=.++
T Consensus 20 ~~t~~~~T~i~~--~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~ 97 (631)
T PF12234_consen 20 LLTSTFETGISN--PSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHH 97 (631)
T ss_pred EEEEEEecCCCC--cceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcE
Confidence 345666666332 22233433322 245567899999999999999999999999999999 9999999999999
Q ss_pred EEEEe--------ccCcceEEEeeeeecCCCCcccceeEEEecCCCCCeeEecC
Q 000725 1034 LHLWE--------MNSSWSAQVEECIIPINDCIYPCIVEMKRIPKCAPLVVGHN 1079 (1329)
Q Consensus 1034 L~IWD--------M~SgWsm~tee~Vi~~n~~v~p~I~elKrFpkss~lIVTgS 1079 (1329)
|.++- -..+|. .....-|. ++..+.|-+. ..-+++.+||+++
T Consensus 98 v~l~~Q~R~dy~~~~p~w~-~i~~i~i~--~~T~h~Igds-~Wl~~G~LvV~sG 147 (631)
T PF12234_consen 98 VLLYTQLRYDYTNKGPSWA-PIRKIDIS--SHTPHPIGDS-IWLKDGTLVVGSG 147 (631)
T ss_pred EEEEEccchhhhcCCcccc-eeEEEEee--cCCCCCccce-eEecCCeEEEEeC
Confidence 99996 234466 33333332 3455667776 7788899998764
No 329
>PRK02888 nitrous-oxide reductase; Validated
Probab=82.63 E-value=11 Score=47.24 Aligned_cols=98 Identities=11% Similarity=0.059 Sum_probs=68.3
Q ss_pred CCcEEEEEecC----cceeeeEEEecc-cceeEEEEe-cCCeEEEecC-CCeEEEEeccCcce--EEEe---e-eeecCC
Q 000725 989 ENAVKIVKVKP----GYVSVVAKLKTD-DCVQCILVC-EPKHLIAVGE-SGKLHLWEMNSSWS--AQVE---E-CIIPIN 1055 (1329)
Q Consensus 989 DNtVKIv~V~~----G~vsll~kL~~h-~sV~cIlVc-DpnhLVSaSd-DGkL~IWDM~SgWs--m~te---e-~Vi~~n 1055 (1329)
+|+|.++|..+ |. -++.+-.. .+.+.|.++ |.+|++.++. +.++.|-|+.+-=. .... . .++-.-
T Consensus 295 gn~V~VID~~t~~~~~~--~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaeve 372 (635)
T PRK02888 295 GSKVPVVDGRKAANAGS--ALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPE 372 (635)
T ss_pred CCEEEEEECCccccCCc--ceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeec
Confidence 58899999988 65 45555556 899999999 9998876665 99999999876221 0000 0 011011
Q ss_pred CCcccceeEEEecCCCCCeeEecCCCccEEEEEccc
Q 000725 1056 DCIYPCIVEMKRIPKCAPLVVGHNGFGEFGIWDISK 1091 (1329)
Q Consensus 1056 ~~v~p~I~elKrFpkss~lIVTgSGDgtf~LWDIsk 1091 (1329)
-|-+|.- -.|...+....|---|+.+..|||++
T Consensus 373 vGlGPLH---TaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 373 LGLGPLH---TAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred cCCCcce---EEECCCCCEEEeEeecceeEEEehHH
Confidence 1222222 17788889999999999999999998
No 330
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=81.60 E-value=4.1 Score=43.30 Aligned_cols=61 Identities=20% Similarity=0.268 Sum_probs=44.2
Q ss_pred eeecCCCeEEeecCCCeEEEEEccccceeeeeecccCceEEEEEecCCCCceEEEecCCCCCCccccC
Q 000725 1209 AIGASSGLGIIGTNDGLVYAWELSSGNKLGILHHFKGGTVSCIATDDSGLQALAVAGDGPDGGRRQRD 1276 (1329)
Q Consensus 1209 afs~SG~~gfaGT~DGlVYmWDLstG~kL~tL~~Heg~rVSCVA~dps~p~~~AsA~d~~d~~~r~~~ 1276 (1329)
|....|..++.||+|| ||+++++...+..++..-.. |+-+++-|.-...++.+ |+++++++
T Consensus 2 c~~~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~~~--I~ql~vl~~~~~llvLs----d~~l~~~~ 62 (275)
T PF00780_consen 2 CADSWGDRLLVGTEDG-LYVYDLSDPSKPTRILKLSS--ITQLSVLPELNLLLVLS----DGQLYVYD 62 (275)
T ss_pred CcccCCCEEEEEECCC-EEEEEecCCccceeEeecce--EEEEEEecccCEEEEEc----CCccEEEE
Confidence 5667899999999999 99999955555544443333 88889987777766776 36666554
No 331
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=81.04 E-value=12 Score=47.91 Aligned_cols=194 Identities=12% Similarity=0.096 Sum_probs=110.3
Q ss_pred cceeEEEEe---cCCeEEEecCCCeEEEEeccCcceEEEee-eee-----cCCCCcccceeEEEecCCCCCeeEec-CCC
Q 000725 1012 DCVQCILVC---EPKHLIAVGESGKLHLWEMNSSWSAQVEE-CII-----PINDCIYPCIVEMKRIPKCAPLVVGH-NGF 1081 (1329)
Q Consensus 1012 ~sV~cIlVc---DpnhLVSaSdDGkL~IWDM~SgWsm~tee-~Vi-----~~n~~v~p~I~elKrFpkss~lIVTg-SGD 1081 (1329)
+..++++|- |..++|=++ +|-|......=- ..+ ..| +......|.=+= ....+.++|+-. ...
T Consensus 431 ~~n~~Lavg~k~DrSfVvRg~---~igVFk~~~~~~--l~f~t~i~~i~~~~g~~~~P~k~m--L~~~d~~mil~~~~~~ 503 (794)
T PF08553_consen 431 EKNSSLAVGYKNDRSFVVRGS---KIGVFKNTDDDG--LEFSTAISNISTPKGKNFTPKKAM--LHDQDRNMILLDPNNP 503 (794)
T ss_pred CccceeEeeeccCceEEECCC---cEeEEECCCCCc--eeeeEEecccccCCCcccCcchhh--hhccccceEeecCCCC
Confidence 667778887 444444322 588877653111 111 111 111112221111 344555665554 456
Q ss_pred ccEEEEEccccceeeeeccCccc-eeEeccccccccccCcceEECcchhhhccccccccccCCCceeecCCCCccceEEE
Q 000725 1082 GEFGIWDISKRVLVSRFSAARAS-IYQFFPINLFSWQRNGSVSMDASLELTNTATTSLFSKHSEKSSFCPSVGEDSAIWL 1160 (1329)
Q Consensus 1082 gtf~LWDIskg~llqsF~ahs~s-V~sfsP~~s~S~d~~v~tfd~~s~d~~leatv~~fSgdvn~VsF~P~sGeD~AiwL 1160 (1329)
..+---||++|+.|+.+..|.+. |.+|.|..-|+. +..+ -.
T Consensus 504 ~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aq----------------------------------lt~e----~t 545 (794)
T PF08553_consen 504 NKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQ----------------------------------LTNE----QT 545 (794)
T ss_pred CceEEEecCCCcEEEEeecCCCcceeEecccccccc----------------------------------cCCC----ce
Confidence 78888999999999999999877 777888852110 0001 12
Q ss_pred EeeccCccchhhcccccccCCCCccee-EEEeeeccceecCCCCCCCceeeecCCCeEEeecCCCeEEEEEccccceeee
Q 000725 1161 LVSTISDSDAQHNCMSRDCQKNPVRFW-RLALLVKNRVILGSPLDPRASAIGASSGLGIIGTNDGLVYAWELSSGNKLGI 1239 (1329)
Q Consensus 1161 LVST~Sdd~t~~Dlra~~~~gH~n~~w-RLALl~K~siI~Gs~ldpra~afs~SG~~gfaGT~DGlVYmWDLstG~kL~t 1239 (1329)
|+|-.++....||.|++. +.. .| ..--|+.+.- =.|+.....+|++.|+.+|-|.|+|-. |++--|
T Consensus 546 flGls~n~lfriDpR~~~---~k~-v~~~~k~Y~~~~~--------Fs~~aTt~~G~iavgs~~G~IRLyd~~-g~~AKT 612 (794)
T PF08553_consen 546 FLGLSDNSLFRIDPRLSG---NKL-VDSQSKQYSSKNN--------FSCFATTEDGYIAVGSNKGDIRLYDRL-GKRAKT 612 (794)
T ss_pred EEEECCCceEEeccCCCC---Cce-eeccccccccCCC--------ceEEEecCCceEEEEeCCCcEEeeccc-chhhhh
Confidence 233344445556666442 110 11 1111211111 125566778999999999999999954 444333
Q ss_pred e-ecccCceEEEEEecCCCCceEEEe
Q 000725 1240 L-HHFKGGTVSCIATDDSGLQALAVA 1264 (1329)
Q Consensus 1240 L-~~Heg~rVSCVA~dps~p~~~AsA 1264 (1329)
+ -+..+ -|..|.+.-++-=++|+|
T Consensus 613 ~lp~lG~-pI~~iDvt~DGkwilaTc 637 (794)
T PF08553_consen 613 ALPGLGD-PIIGIDVTADGKWILATC 637 (794)
T ss_pred cCCCCCC-CeeEEEecCCCcEEEEee
Confidence 3 46666 899999997777667777
No 332
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=79.26 E-value=1.1e+02 Score=35.97 Aligned_cols=56 Identities=11% Similarity=0.108 Sum_probs=48.8
Q ss_pred ccCCCCcEEEEEecCcceeeeEEEecccceeEEEEe--cCCeEEEecCCCeEEEEeccCc
Q 000725 985 HRLDENAVKIVKVKPGYVSVVAKLKTDDCVQCILVC--EPKHLIAVGESGKLHLWEMNSS 1042 (1329)
Q Consensus 985 s~seDNtVKIv~V~~G~vsll~kL~~h~sV~cIlVc--DpnhLVSaSdDGkL~IWDM~Sg 1042 (1329)
.+.-.+.|-.-.+++|. ...+|.+.+.|.|=+.| |..-|.-++.||+++.-|..+-
T Consensus 68 ~GCy~g~lYfl~~~tGs--~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~ 125 (354)
T KOG4649|consen 68 LGCYSGGLYFLCVKTGS--QIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTY 125 (354)
T ss_pred EEEccCcEEEEEecchh--heeeeeehhhhccceEEcCCCceEEEecCCCcEEEeccccc
Confidence 56667778899999998 89999999999999999 7778999999999999996554
No 333
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.78 E-value=13 Score=47.90 Aligned_cols=189 Identities=14% Similarity=0.115 Sum_probs=112.7
Q ss_pred ccccccccccccCCCCcEEEEEecCcceeeeEEEecc-cc-eeEEEEe-cCCeEEEecCCCe-----EEEEeccCc---c
Q 000725 975 SDCLCSTCTSHRLDENAVKIVKVKPGYVSVVAKLKTD-DC-VQCILVC-EPKHLIAVGESGK-----LHLWEMNSS---W 1043 (1329)
Q Consensus 975 ~dC~Cs~C~~s~seDNtVKIv~V~~G~vsll~kL~~h-~s-V~cIlVc-DpnhLVSaSdDGk-----L~IWDM~Sg---W 1043 (1329)
++|.||-=.+.-..++-.+||..+.+. ..++-|++| .+ |+-+-+. +-+.|+|+++|++ |+|||++-. -
T Consensus 28 isc~~s~~~~vvigt~~G~V~~Ln~s~-~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~ 106 (933)
T KOG2114|consen 28 ISCCSSSTGSVVIGTADGRVVILNSSF-QLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNN 106 (933)
T ss_pred eeEEcCCCceEEEeeccccEEEecccc-eeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCC
Confidence 455555545555566777888888876 455999999 66 5555555 4489999999987 999995432 2
Q ss_pred eEEEee---eeecCCCCcccceeEEEecCCCCCeeEecCCCccEEEE--Ecc--ccceeeeeccCccceeE--eccccc-
Q 000725 1044 SAQVEE---CIIPINDCIYPCIVEMKRIPKCAPLVVGHNGFGEFGIW--DIS--KRVLVSRFSAARASIYQ--FFPINL- 1113 (1329)
Q Consensus 1044 sm~tee---~Vi~~n~~v~p~I~elKrFpkss~lIVTgSGDgtf~LW--DIs--kg~llqsF~ahs~sV~s--fsP~~s- 1113 (1329)
+-.|.+ ..-..|+ ..|.....-.+..+-..||-|=++|.+... ||. +|..++--+--..+|+. |.-++.
T Consensus 107 sP~c~~~~ri~~~~np-~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s 185 (933)
T KOG2114|consen 107 SPQCLYEHRIFTIKNP-TNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKS 185 (933)
T ss_pred CcceeeeeeeeccCCC-CCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCce
Confidence 122221 1111333 233333323667788999999999998876 442 34445555555677777 444441
Q ss_pred --c-ccccCcceEECcchh--hh-ccccccccccCCCceeecCCCCccceEEEEeeccCccchhhccc
Q 000725 1114 --F-SWQRNGSVSMDASLE--LT-NTATTSLFSKHSEKSSFCPSVGEDSAIWLLVSTISDSDAQHNCM 1175 (1329)
Q Consensus 1114 --~-S~d~~v~tfd~~s~d--~~-leatv~~fSgdvn~VsF~P~sGeD~AiwLLVST~Sdd~t~~Dlr 1175 (1329)
| +-...|.+|.+.+-. .. +..++-++.. .+|.+.++ =|+=++++-.+.||--
T Consensus 186 ~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnC----ss~~~~t~------qfIca~~e~l~fY~sd 243 (933)
T KOG2114|consen 186 VLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNC----SSFSDGTY------QFICAGSEFLYFYDSD 243 (933)
T ss_pred eEEEEecceeEEEEecCCCcceeeeccCCcccee----eecCCCCc------cEEEecCceEEEEcCC
Confidence 2 234557777777433 11 3445554444 77777333 2233666666665543
No 334
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=78.08 E-value=1.6e+02 Score=35.32 Aligned_cols=106 Identities=15% Similarity=0.155 Sum_probs=61.2
Q ss_pred cCCCCcEEEEEecCcceeeeEEEecccc--------e-eEEEEecCCeEEEecCCCeEEEEeccCcceEEEeeeeec---
Q 000725 986 RLDENAVKIVKVKPGYVSVVAKLKTDDC--------V-QCILVCEPKHLIAVGESGKLHLWEMNSSWSAQVEECIIP--- 1053 (1329)
Q Consensus 986 ~seDNtVKIv~V~~G~vsll~kL~~h~s--------V-~cIlVcDpnhLVSaSdDGkL~IWDM~SgWsm~tee~Vi~--- 1053 (1329)
++.++.|.-++.++|. ++=++..... + .-+.+.+...++.++.||.|+-.|+.||-..=....--.
T Consensus 67 ~~~~g~l~AlD~~tG~--~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~ 144 (488)
T cd00216 67 TTSHSALFALDAATGK--VLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPP 144 (488)
T ss_pred eCCCCcEEEEECCCCh--hhceeCCCCCccccccccccCCcEEccCCeEEEecCCCeEEEEECCCCCEeeeecCCCCcCc
Confidence 3445777778888887 4433332211 1 122334546777778899999999998855544441100
Q ss_pred CCCCc-ccceeEEEecCCCCCeeEec--------CCCccEEEEEccccceeeeecc
Q 000725 1054 INDCI-YPCIVEMKRIPKCAPLVVGH--------NGFGEFGIWDISKRVLVSRFSA 1100 (1329)
Q Consensus 1054 ~n~~v-~p~I~elKrFpkss~lIVTg--------SGDgtf~LWDIskg~llqsF~a 1100 (1329)
..... +|.+.. +.++++. ..+|.+.-.|.++|+.+=.|..
T Consensus 145 ~~~i~ssP~v~~-------~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~ 193 (488)
T cd00216 145 GYTMTGAPTIVK-------KLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYT 193 (488)
T ss_pred ceEecCCCEEEC-------CEEEEeccccccccCCCCcEEEEEECCCCceeeEeec
Confidence 00011 122221 3334432 3478889999999999877755
No 335
>PRK02888 nitrous-oxide reductase; Validated
Probab=76.05 E-value=59 Score=41.21 Aligned_cols=31 Identities=6% Similarity=-0.078 Sum_probs=23.4
Q ss_pred eeEEEecCCCCCe-eEecCCCccEEEEEccccc
Q 000725 1062 IVEMKRIPKCAPL-VVGHNGFGEFGIWDISKRV 1093 (1329)
Q Consensus 1062 I~elKrFpkss~l-IVTgSGDgtf~LWDIskg~ 1093 (1329)
-+.+ ++.+++.. ++++-.+.++++-|+++..
T Consensus 323 PHGV-~vSPDGkylyVanklS~tVSVIDv~k~k 354 (635)
T PRK02888 323 PHGV-NTSPDGKYFIANGKLSPTVTVIDVRKLD 354 (635)
T ss_pred ccce-EECCCCCEEEEeCCCCCcEEEEEChhhh
Confidence 3445 78887775 5556669999999999966
No 336
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=75.52 E-value=2.8e+02 Score=36.73 Aligned_cols=277 Identities=18% Similarity=0.185 Sum_probs=140.6
Q ss_pred eeeeccCCeEEEEEEeccccc-cceEEEEEEeeeCCCCCCCCceeecccccccccccccccccccccceeeecCCCcEEE
Q 000725 882 VLLSTTGDKIYVCVSCGFLVD-KKRTLFIYTVDIQEPRVGNPSCVGHTSVMLPFLKDNFGREIALERSCALFTPDGQYLV 960 (1329)
Q Consensus 882 v~l~t~~~ei~IcVlCG~L~~-~~r~Lf~Yki~i~~~~~~~p~~vg~t~~llp~~~~~~~~~~~~ersglqFTPDGQ~Lv 960 (1329)
+-+.=|||-=|..|+.---.. .-|.+=||. |.| .|.+.++..-|- +..|.|-|.|++|+
T Consensus 213 ~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~------ReG---------~L~stSE~v~gL-----e~~l~WrPsG~lIA 272 (928)
T PF04762_consen 213 VRISWRGDGEYFAVSSVEPETGSRRVIRVYS------REG---------ELQSTSEPVDGL-----EGALSWRPSGNLIA 272 (928)
T ss_pred eEEEECCCCcEEEEEEEEcCCCceeEEEEEC------CCc---------eEEeccccCCCc-----cCCccCCCCCCEEE
Confidence 456668888777766442233 378998986 333 344444433332 56789999999998
Q ss_pred EecCccCccccCCCccccccccccccCCCCcEEEEE-----ecCcceeeeEEEecc-cceeEEEEe-cCCeEEEecCCCe
Q 000725 961 LLDSMKTPYCREGRSDCLCSTCTSHRLDENAVKIVK-----VKPGYVSVVAKLKTD-DCVQCILVC-EPKHLIAVGESGK 1033 (1329)
Q Consensus 961 Llgsik~p~CR~~~~dC~Cs~C~~s~seDNtVKIv~-----V~~G~vsll~kL~~h-~sV~cIlVc-DpnhLVSaSdDGk 1033 (1329)
++-|.| +...|+= ...|- -.-.+... ..|..+.|. |...|+-.-+|+
T Consensus 273 --~~q~~~---------------------~~~~VvFfErNGLrhge--F~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~- 326 (928)
T PF04762_consen 273 --SSQRLP---------------------DRHDVVFFERNGLRHGE--FTLRFDPEEEKVIELAWNSDSEILAVWLEDR- 326 (928)
T ss_pred --EEEEcC---------------------CCcEEEEEecCCcEeee--EecCCCCCCceeeEEEECCCCCEEEEEecCC-
Confidence 222222 2233332 22332 22233223 678999999 999888877666
Q ss_pred EEEEec-cCcceEEEeeeeecCCCCcccceeEEEecCCCCCeeEecCCCccEEEEEccccceeeeecc-CccceeEeccc
Q 000725 1034 LHLWEM-NSSWSAQVEECIIPINDCIYPCIVEMKRIPKCAPLVVGHNGFGEFGIWDISKRVLVSRFSA-ARASIYQFFPI 1111 (1329)
Q Consensus 1034 L~IWDM-~SgWsm~tee~Vi~~n~~v~p~I~elKrFpkss~lIVTgSGDgtf~LWDIskg~llqsF~a-hs~sV~sfsP~ 1111 (1329)
|++|-+ |=.|-.+-+. +|+....... --||-++-..+..+.. -...++.|.-.
T Consensus 327 vqLWt~~NYHWYLKqei-----------------~~~~~~~~~~--------~~Wdpe~p~~L~v~t~~g~~~~~~~~~~ 381 (928)
T PF04762_consen 327 VQLWTRSNYHWYLKQEI-----------------RFSSSESVNF--------VKWDPEKPLRLHVLTSNGQYEIYDFAWD 381 (928)
T ss_pred ceEEEeeCCEEEEEEEE-----------------EccCCCCCCc--------eEECCCCCCEEEEEecCCcEEEEEEEEE
Confidence 999996 5566666655 5655433221 5677776666555554 22222222222
Q ss_pred cc----cccccCcceEECcchhhh---c-ccc--------ccccccCCCceeecCCCCccceEEEEeeccCccchhhc--
Q 000725 1112 NL----FSWQRNGSVSMDASLELT---N-TAT--------TSLFSKHSEKSSFCPSVGEDSAIWLLVSTISDSDAQHN-- 1173 (1329)
Q Consensus 1112 ~s----~S~d~~v~tfd~~s~d~~---l-eat--------v~~fSgdvn~VsF~P~sGeD~AiwLLVST~Sdd~t~~D-- 1173 (1329)
-. .+-+..+.+.++.+.... + .+- ...+...++.|+|.| +++. +.+| +.+.....|+
T Consensus 382 v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~-~~~~--~avl--~~d~~l~~~~~~ 456 (928)
T PF04762_consen 382 VSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSP-SNSR--FAVL--TSDGSLSIYEWD 456 (928)
T ss_pred EEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeC-CCCe--EEEE--ECCCCEEEEEec
Confidence 11 111223345555444444 1 222 222455788899998 3433 3344 4444444444
Q ss_pred ccccccCCCCcceeEEEee-eccceecCCCCCCCceeeecCCCeEEeecCC---CeEEEEEcccc
Q 000725 1174 CMSRDCQKNPVRFWRLALL-VKNRVILGSPLDPRASAIGASSGLGIIGTND---GLVYAWELSSG 1234 (1329)
Q Consensus 1174 lra~~~~gH~n~~wRLALl-~K~siI~Gs~ldpra~afs~SG~~gfaGT~D---GlVYmWDLstG 1234 (1329)
........++.-.+.+..- +.....--...-+|-.++......++....+ ..+.++++...
T Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 521 (928)
T PF04762_consen 457 LKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDS 521 (928)
T ss_pred CCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEecCcccceEEEEEeccC
Confidence 4322112233333333220 0000000112234445555555544444443 67777777433
No 337
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=74.72 E-value=55 Score=42.43 Aligned_cols=127 Identities=12% Similarity=0.168 Sum_probs=82.6
Q ss_pred ccceeeecCCCcEEEEecCccCccccCCCccccccccccccCCCCcEEEEEecCcceeeeEEEecc-cceeEEEEe-cCC
Q 000725 946 ERSCALFTPDGQYLVLLDSMKTPYCREGRSDCLCSTCTSHRLDENAVKIVKVKPGYVSVVAKLKTD-DCVQCILVC-EPK 1023 (1329)
Q Consensus 946 ersglqFTPDGQ~LvLlgsik~p~CR~~~~dC~Cs~C~~s~seDNtVKIv~V~~G~vsll~kL~~h-~sV~cIlVc-Dpn 1023 (1329)
+|..+.|+|.|-.-. +--+.|-+||+-+-. +++.++-| ..|..|-|. .|.
T Consensus 17 N~~A~Dw~~~GLiAy--------------------------gshslV~VVDs~s~q--~iqsie~h~s~V~~VrWap~~~ 68 (1062)
T KOG1912|consen 17 NRNAADWSPSGLIAY--------------------------GSHSLVSVVDSRSLQ--LIQSIELHQSAVTSVRWAPAPS 68 (1062)
T ss_pred cccccccCccceEEE--------------------------ecCceEEEEehhhhh--hhhccccCccceeEEEeccCCC
Confidence 477889999985433 223678888888744 88999999 889999887 442
Q ss_pred ------------eEEEecCCCeEEEEeccCcceEEEeeeeecCCCCcccceeEEEecCCCCCeeEecCCCccEEEEEccc
Q 000725 1024 ------------HLIAVGESGKLHLWEMNSSWSAQVEECIIPINDCIYPCIVEMKRIPKCAPLVVGHNGFGEFGIWDISK 1091 (1329)
Q Consensus 1024 ------------hLVSaSdDGkL~IWDM~SgWsm~tee~Vi~~n~~v~p~I~elKrFpkss~lIVTgSGDgtf~LWDIsk 1091 (1329)
.|+++--.|+|+|||...+=++--+. .+|+-+-...+=. .=+.+-.+++-=.+-.++.||.-.+
T Consensus 69 p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~---~~~~~~qdl~W~~-~rd~Srd~LlaIh~ss~lvLwntdt 144 (1062)
T KOG1912|consen 69 PRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLS---HSNDSVQDLCWVP-ARDDSRDVLLAIHGSSTLVLWNTDT 144 (1062)
T ss_pred chhccCccccceeEEeccccCcEEEEEehhhhhhhhhc---CCCcchhheeeee-ccCcchheeEEecCCcEEEEEEccC
Confidence 24556668999999987754433322 3333221111111 2222225677777889999999999
Q ss_pred cceeeeeccCccc
Q 000725 1092 RVLVSRFSAARAS 1104 (1329)
Q Consensus 1092 g~llqsF~ahs~s 1104 (1329)
|+++=...+.-..
T Consensus 145 G~k~Wk~~ys~~i 157 (1062)
T KOG1912|consen 145 GEKFWKYDYSHEI 157 (1062)
T ss_pred CceeeccccCCcc
Confidence 9996655544333
No 338
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=74.13 E-value=9 Score=45.77 Aligned_cols=83 Identities=13% Similarity=0.200 Sum_probs=62.0
Q ss_pred ceeeecCCCeEEeecCCCeEEEEEccccceeeeeecccCceEEEEEecCCCCceEEEe-----cCCCCCCccccCCCCCC
Q 000725 1207 ASAIGASSGLGIIGTNDGLVYAWELSSGNKLGILHHFKGGTVSCIATDDSGLQALAVA-----GDGPDGGRRQRDPRHGQ 1281 (1329)
Q Consensus 1207 a~afs~SG~~gfaGT~DGlVYmWDLstG~kL~tL~~Heg~rVSCVA~dps~p~~~AsA-----~d~~d~~~r~~~~~~s~ 1281 (1329)
..+.+|+|++.++-.+=|.|+++|+.+|..+.+++|-.+..+.+|.+......-.... ...-.--|-|++||-
T Consensus 312 ~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyaprR-- 389 (415)
T PF14655_consen 312 SICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAPRR-- 389 (415)
T ss_pred EEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEeccC--
Confidence 4788999999999888899999999999999999999999999998886654300000 000011255888865
Q ss_pred CCcEEEeeeCC
Q 000725 1282 NDHVRIWKMDP 1292 (1329)
Q Consensus 1282 D~~VRiW~~~~ 1292 (1329)
+-|.||.|+.
T Consensus 390 -g~lEvW~~~~ 399 (415)
T PF14655_consen 390 -GILEVWSMRQ 399 (415)
T ss_pred -CeEEEEecCC
Confidence 5799999864
No 339
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=73.83 E-value=1.7e+02 Score=33.50 Aligned_cols=77 Identities=9% Similarity=0.106 Sum_probs=49.8
Q ss_pred ccccceeeecCCCcEEEEecCccCccccCCCccccccccccccCCCCcEEEEEecCcceeeeE-EEecccceeEEEEe-c
Q 000725 944 ALERSCALFTPDGQYLVLLDSMKTPYCREGRSDCLCSTCTSHRLDENAVKIVKVKPGYVSVVA-KLKTDDCVQCILVC-E 1021 (1329)
Q Consensus 944 ~~ersglqFTPDGQ~LvLlgsik~p~CR~~~~dC~Cs~C~~s~seDNtVKIv~V~~G~vsll~-kL~~h~sV~cIlVc-D 1021 (1329)
..-..+..++|||++|++.=+. .|++.-+|+|.++++|. .+. .|..... ..|.|. |
T Consensus 123 ~~~~~~~~~Spdg~~la~~~s~-------------------~G~e~~~l~v~Dl~tg~--~l~d~i~~~~~-~~~~W~~d 180 (414)
T PF02897_consen 123 YVSLGGFSVSPDGKRLAYSLSD-------------------GGSEWYTLRVFDLETGK--FLPDGIENPKF-SSVSWSDD 180 (414)
T ss_dssp -EEEEEEEETTTSSEEEEEEEE-------------------TTSSEEEEEEEETTTTE--EEEEEEEEEES-EEEEECTT
T ss_pred eEEeeeeeECCCCCEEEEEecC-------------------CCCceEEEEEEECCCCc--CcCCccccccc-ceEEEeCC
Confidence 4444578899999999943332 67888899999999996 443 3333322 238888 7
Q ss_pred CCeEEEecCC-----------CeEEEEeccCc
Q 000725 1022 PKHLIAVGES-----------GKLHLWEMNSS 1042 (1329)
Q Consensus 1022 pnhLVSaSdD-----------GkL~IWDM~Sg 1042 (1329)
...++-..-+ .+|..|++-+.
T Consensus 181 ~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~ 212 (414)
T PF02897_consen 181 GKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTP 212 (414)
T ss_dssp SSEEEEEECSTTTSS-CCGCCEEEEEEETTS-
T ss_pred CCEEEEEEeCcccccccCCCCcEEEEEECCCC
Confidence 6666555422 23677776664
No 340
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=73.41 E-value=6.2 Score=50.88 Aligned_cols=75 Identities=13% Similarity=0.213 Sum_probs=59.8
Q ss_pred ceeeecCCCeEEeecCCCeEEEEEccccceeeeeecccCceEEEEEecCCCCceEEEecCCCCCCccccCCCCCCCCcEE
Q 000725 1207 ASAIGASSGLGIIGTNDGLVYAWELSSGNKLGILHHFKGGTVSCIATDDSGLQALAVAGDGPDGGRRQRDPRHGQNDHVR 1286 (1329)
Q Consensus 1207 a~afs~SG~~gfaGT~DGlVYmWDLstG~kL~tL~~Heg~rVSCVA~dps~p~~~AsA~d~~d~~~r~~~~~~s~D~~VR 1286 (1329)
+.-.-.+++++|||.--|+|.+=|+-+.+.++++.+|+| .||...++ -+-+++||=+ .|..-- ..|.-|+
T Consensus 180 v~imR~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~-siSDfDv~---GNlLitCG~S----~R~~~l--~~D~Fvk 249 (1118)
T KOG1275|consen 180 VTIMRYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSG-SISDFDVQ---GNLLITCGYS----MRRYNL--AMDPFVK 249 (1118)
T ss_pred eEEEEecCcEEEeecccceEEeecCCcCceeeeeecccc-ceeeeecc---CCeEEEeecc----cccccc--cccchhh
Confidence 345567899999999999999999999999999999999 79988888 4447777643 333322 5678888
Q ss_pred EeeeC
Q 000725 1287 IWKMD 1291 (1329)
Q Consensus 1287 iW~~~ 1291 (1329)
|||.+
T Consensus 250 VYDLR 254 (1118)
T KOG1275|consen 250 VYDLR 254 (1118)
T ss_pred hhhhh
Confidence 88864
No 341
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=72.75 E-value=2e+02 Score=33.83 Aligned_cols=73 Identities=12% Similarity=0.099 Sum_probs=52.4
Q ss_pred eEEEEeccCcceEEEeeeeecCCCC-cccceeEEEecCCCCCeeEe-----cCCCccEEEEEcc-ccceeeeeccCccce
Q 000725 1033 KLHLWEMNSSWSAQVEECIIPINDC-IYPCIVEMKRIPKCAPLVVG-----HNGFGEFGIWDIS-KRVLVSRFSAARASI 1105 (1329)
Q Consensus 1033 kL~IWDM~SgWsm~tee~Vi~~n~~-v~p~I~elKrFpkss~lIVT-----gSGDgtf~LWDIs-kg~llqsF~ahs~sV 1105 (1329)
-+.+||..++-...... ++++.- -++. .|.+++.++.+ .++.|-|.|||.+ .-+.+..|..|+..=
T Consensus 29 ~~~v~D~~~g~~~~~~~--a~~gRHFyGHg-----~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGP 101 (305)
T PF07433_consen 29 FALVFDCRTGQLLQRLW--APPGRHFYGHG-----VFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGP 101 (305)
T ss_pred EEEEEEcCCCceeeEEc--CCCCCEEecCE-----EEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcCh
Confidence 36788888877666443 222221 1121 57778887776 6889999999999 667799999999987
Q ss_pred eE--ecccc
Q 000725 1106 YQ--FFPIN 1112 (1329)
Q Consensus 1106 ~s--fsP~~ 1112 (1329)
.+ +.|++
T Consensus 102 Hel~l~pDG 110 (305)
T PF07433_consen 102 HELLLMPDG 110 (305)
T ss_pred hhEEEcCCC
Confidence 77 78886
No 342
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=72.03 E-value=1.4e+02 Score=33.33 Aligned_cols=174 Identities=11% Similarity=0.070 Sum_probs=95.6
Q ss_pred eecccccceeeeeeccC--CeEEEEEEeccccccc-----eEEEEEEeeeCCCCCCCCceeecccccccccccccccccc
Q 000725 872 CYFFPLPILSVLLSTTG--DKIYVCVSCGFLVDKK-----RTLFIYTVDIQEPRVGNPSCVGHTSVMLPFLKDNFGREIA 944 (1329)
Q Consensus 872 ~y~HpmpVlsv~l~t~~--~ei~IcVlCG~L~~~~-----r~Lf~Yki~i~~~~~~~p~~vg~t~~llp~~~~~~~~~~~ 944 (1329)
.++|++-+..+-|...+ ..=+|+|..++....+ -.|++|++.-. | ++-. -++.....+
T Consensus 22 ~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~------~----~~~~---~l~~i~~~~-- 86 (321)
T PF03178_consen 22 PNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISES------P----ENNF---KLKLIHSTE-- 86 (321)
T ss_dssp TTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS------------------EEEEEEEEE--
T ss_pred CCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcc------c----ccce---EEEEEEEEe--
Confidence 35677777777776543 5689999999876421 56788988764 1 0000 011111111
Q ss_pred cccceeeecCCCcEEEEecCccCccccCCCccccccccccccCCCCcEEEEEecCcc-eeeeEEEecccceeEEEEecCC
Q 000725 945 LERSCALFTPDGQYLVLLDSMKTPYCREGRSDCLCSTCTSHRLDENAVKIVKVKPGY-VSVVAKLKTDDCVQCILVCEPK 1023 (1329)
Q Consensus 945 ~ersglqFTPDGQ~LvLlgsik~p~CR~~~~dC~Cs~C~~s~seDNtVKIv~V~~G~-vsll~kL~~h~sV~cIlVcDpn 1023 (1329)
++-...++++-+.+|| .+-.+.|.||++.... ...+..+.+.--+.+|.++++
T Consensus 87 ~~g~V~ai~~~~~~lv-------------------------~~~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~- 140 (321)
T PF03178_consen 87 VKGPVTAICSFNGRLV-------------------------VAVGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKN- 140 (321)
T ss_dssp ESS-EEEEEEETTEEE-------------------------EEETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETT-
T ss_pred ecCcceEhhhhCCEEE-------------------------EeecCEEEEEEccCcccchhhheecceEEEEEEecccc-
Confidence 1122223322233444 2345899999999988 666666666677888888855
Q ss_pred eEEEecCCCeEEEEeccCcceEEEeeeeecCCCCcccceeEEEecCCCCCeeEecCCCccEEEEEccc
Q 000725 1024 HLIAVGESGKLHLWEMNSSWSAQVEECIIPINDCIYPCIVEMKRIPKCAPLVVGHNGFGEFGIWDISK 1091 (1329)
Q Consensus 1024 hLVSaSdDGkL~IWDM~SgWsm~tee~Vi~~n~~v~p~I~elKrFpkss~lIVTgSGDgtf~LWDIsk 1091 (1329)
+|+.+---+.|.++.... .-..+..++- ++..-.+... .|-.+...++.++.+|.+.++....
T Consensus 141 ~I~vgD~~~sv~~~~~~~--~~~~l~~va~--d~~~~~v~~~-~~l~d~~~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 141 YILVGDAMKSVSLLRYDE--ENNKLILVAR--DYQPRWVTAA-EFLVDEDTIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp EEEEEESSSSEEEEEEET--TTE-EEEEEE--ESS-BEEEEE-EEE-SSSEEEEEETTSEEEEEEE-S
T ss_pred EEEEEEcccCEEEEEEEc--cCCEEEEEEe--cCCCccEEEE-EEecCCcEEEEEcCCCeEEEEEECC
Confidence 555555556666663332 0111222222 2223345555 4442335999999999999998873
No 343
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=70.67 E-value=67 Score=41.71 Aligned_cols=249 Identities=12% Similarity=0.055 Sum_probs=136.6
Q ss_pred cCCCCcEEEEEecCcceeeeEEEecc-cceeEEEEe--cCCeEEEecCCCeEEEEec-cCc-ceEEEeeeee-cCC-C--
Q 000725 986 RLDENAVKIVKVKPGYVSVVAKLKTD-DCVQCILVC--EPKHLIAVGESGKLHLWEM-NSS-WSAQVEECII-PIN-D-- 1056 (1329)
Q Consensus 986 ~seDNtVKIv~V~~G~vsll~kL~~h-~sV~cIlVc--DpnhLVSaSdDGkL~IWDM-~Sg-Wsm~tee~Vi-~~n-~-- 1056 (1329)
=+..++|-+|+-.+|- .+=|...- .-+.|+-+= |++|+.--|-.|.|.+=+. .+. =..+.-+|-| .+. +
T Consensus 131 Ih~ss~lvLwntdtG~--k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~ 208 (1062)
T KOG1912|consen 131 IHGSSTLVLWNTDTGE--KFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLA 208 (1062)
T ss_pred ecCCcEEEEEEccCCc--eeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchh
Confidence 3456899999999998 55554433 556666666 9999988888999988872 111 0111112222 110 0
Q ss_pred ----------Ccccc-------eeEEE-ecCCCCCeeEecCCCccEEEEEccccceeeeeccCcc--ceeEecccc----
Q 000725 1057 ----------CIYPC-------IVEMK-RIPKCAPLVVGHNGFGEFGIWDISKRVLVSRFSAARA--SIYQFFPIN---- 1112 (1329)
Q Consensus 1057 ----------~v~p~-------I~elK-rFpkss~lIVTgSGDgtf~LWDIskg~llqsF~ahs~--sV~sfsP~~---- 1112 (1329)
.++.+ .++.+ +|.+.=..|+=--+-.++-|.|++.-+++.+..=+++ ...++.|+.
T Consensus 209 ~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~ 288 (1062)
T KOG1912|consen 209 HLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDA 288 (1062)
T ss_pred hhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcce
Confidence 00000 00111 4444444444444556888999999999888776665 455677776
Q ss_pred --ccccccCcceEECcch----------------hhh---c-cccccccccCCCceeecCCCCccceEEEEeeccCccch
Q 000725 1113 --LFSWQRNGSVSMDASL----------------ELT---N-TATTSLFSKHSEKSSFCPSVGEDSAIWLLVSTISDSDA 1170 (1329)
Q Consensus 1113 --s~S~d~~v~tfd~~s~----------------d~~---l-eatv~~fSgdvn~VsF~P~sGeD~AiwLLVST~Sdd~t 1170 (1329)
+.+.+|-+.+|..... +-. + .-+.++|.+ + -.| +-+. |.-+|+|.++.+
T Consensus 289 LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~----~-~cP-s~~s-a~avl~s~g~~~-- 359 (1062)
T KOG1912|consen 289 LFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIG----A-SCP-STPS-ALAVLYSSGDST-- 359 (1062)
T ss_pred EEEEecCCeEEEEEeeccCccccccchhhccccccceEEEeechhccccee----e-cCC-CChh-hhhhhhhcchhH--
Confidence 5666777777765541 111 2 233455555 1 122 1112 222333332221
Q ss_pred hhccc-----------------------------------ccccCCCCcceeEEEeeeccceecCCCCCCCceeeecCC-
Q 000725 1171 QHNCM-----------------------------------SRDCQKNPVRFWRLALLVKNRVILGSPLDPRASAIGASS- 1214 (1329)
Q Consensus 1171 ~~Dlr-----------------------------------a~~~~gH~n~~wRLALl~K~siI~Gs~ldpra~afs~SG- 1214 (1329)
.|.++ +.+-.+|+.++-....-. .=-|..+...|.|
T Consensus 360 ~w~l~~~ri~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p--------~p~~t~~~~~p~~n 431 (1062)
T KOG1912|consen 360 FWQLSNGRIHLDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRP--------MPELTKVENDPGGN 431 (1062)
T ss_pred HHhhhcCCcCcccccccccccccccccCceeehhhccccchhhcCCCCCCceeeeccc--------CcccceeecCCCCC
Confidence 12222 112123444433221100 0001112222222
Q ss_pred ------CeEEeecCCCeEEEEEccccceeeeeecccCceEEEEEec
Q 000725 1215 ------GLGIIGTNDGLVYAWELSSGNKLGILHHFKGGTVSCIATD 1254 (1329)
Q Consensus 1215 ------~~gfaGT~DGlVYmWDLstG~kL~tL~~Heg~rVSCVA~d 1254 (1329)
.+++-||+-|+|.+.|++++..-..+.-|.. .|-|+.--
T Consensus 432 ~~~~~~pLvAvGT~sGTV~vvdvst~~v~~~fsvht~-~VkgleW~ 476 (1062)
T KOG1912|consen 432 TPAGTVPLVAVGTNSGTVDVVDVSTNAVAASFSVHTS-LVKGLEWL 476 (1062)
T ss_pred ccceeeeeEEeecCCceEEEEEecchhhhhhhccccc-ceeeeeec
Confidence 3678899999999999999999999999999 78888654
No 344
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=70.42 E-value=3.6e+02 Score=35.78 Aligned_cols=249 Identities=15% Similarity=0.119 Sum_probs=153.4
Q ss_pred cEEEEEecCcc-eeeeEEEec------ccceeEEEEe-cCCeEEEecCCCeEEEE----eccCcceEEEeeeeecCCCCc
Q 000725 991 AVKIVKVKPGY-VSVVAKLKT------DDCVQCILVC-EPKHLIAVGESGKLHLW----EMNSSWSAQVEECIIPINDCI 1058 (1329)
Q Consensus 991 tVKIv~V~~G~-vsll~kL~~------h~sV~cIlVc-DpnhLVSaSdDGkL~IW----DM~SgWsm~tee~Vi~~n~~v 1058 (1329)
+|.+.....+. +.+++.+.+ .+.|.++-.. |.+-|+-+-.+|-|.+. |..+.-....- .+
T Consensus 48 ~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG--------~v 119 (928)
T PF04762_consen 48 VIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVG--------SV 119 (928)
T ss_pred EEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEE--------EE
Confidence 45555543332 456777753 2788888888 99999999999999999 55553222221 24
Q ss_pred ccceeEEEecCCCCCeeEecCCCccEEE----EEcccc-------------------ceeeeeccCccce----------
Q 000725 1059 YPCIVEMKRIPKCAPLVVGHNGFGEFGI----WDISKR-------------------VLVSRFSAARASI---------- 1105 (1329)
Q Consensus 1059 ~p~I~elKrFpkss~lIVTgSGDgtf~L----WDIskg-------------------~llqsF~ahs~sV---------- 1105 (1329)
-..|.+. +..++..+|+-..|++++-+ ||+-.= +.=.-|+|-.+--
T Consensus 120 d~GI~a~-~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~ 198 (928)
T PF04762_consen 120 DSGILAA-SWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTV 198 (928)
T ss_pred cCcEEEE-EECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCC
Confidence 4557778 89999999998888888755 443221 1112233322221
Q ss_pred -----eEec-ccc--ccccccCcceEECcchhh-----h------ccccccccccCCC----ceeecCCCCccceEEEEe
Q 000725 1106 -----YQFF-PIN--LFSWQRNGSVSMDASLEL-----T------NTATTSLFSKHSE----KSSFCPSVGEDSAIWLLV 1162 (1329)
Q Consensus 1106 -----~sfs-P~~--s~S~d~~v~tfd~~s~d~-----~------leatv~~fSgdvn----~VsF~P~sGeD~AiwLLV 1162 (1329)
-.++ .++ ..||-|++.-|.+++++. + |++.-+..|..++ .+++.| + |.||-.
T Consensus 199 ~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~ReG~L~stSE~v~gLe~~l~WrP-s----G~lIA~ 273 (928)
T PF04762_consen 199 PKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSREGELQSTSEPVDGLEGALSWRP-S----GNLIAS 273 (928)
T ss_pred CccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCCceEEeccccCCCccCCccCCC-C----CCEEEE
Confidence 0022 112 667999999999888722 2 4555555555443 377888 3 444443
Q ss_pred eccCccchhhcccccccCCCCcceeEEEeeeccceecCC---CC-----CCCceeeecCCCeEEeecCCCeEEEEEcccc
Q 000725 1163 STISDSDAQHNCMSRDCQKNPVRFWRLALLVKNRVILGS---PL-----DPRASAIGASSGLGIIGTNDGLVYAWELSSG 1234 (1329)
Q Consensus 1163 ST~Sdd~t~~Dlra~~~~gH~n~~wRLALl~K~siI~Gs---~l-----dpra~afs~SG~~gfaGT~DGlVYmWDLstG 1234 (1329)
+.. ++ ..+.+.+++||.+-=|. ++ .-+..+.+.++..++.-.+|. |.+|=.+--
T Consensus 274 ~q~----------------~~-~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NY 335 (928)
T PF04762_consen 274 SQR----------------LP-DRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNY 335 (928)
T ss_pred EEE----------------cC-CCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCC
Confidence 321 11 12578888888776554 11 124567788999999988777 999976544
Q ss_pred c--eeeeeecccCceEEEEEecCCCCceEEEecCCCCCC
Q 000725 1235 N--KLGILHHFKGGTVSCIATDDSGLQALAVAGDGPDGG 1271 (1329)
Q Consensus 1235 ~--kL~tL~~Heg~rVSCVA~dps~p~~~AsA~d~~d~~ 1271 (1329)
. .=+.++...+.++..+.-||.+|..+.+.+.+|...
T Consensus 336 HWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~ 374 (928)
T PF04762_consen 336 HWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYE 374 (928)
T ss_pred EEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEE
Confidence 3 113334444445677999999998888886544433
No 345
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=68.89 E-value=2 Score=53.34 Aligned_cols=208 Identities=13% Similarity=0.098 Sum_probs=118.2
Q ss_pred eeEEEEe--cCCeEEEecC----CCeEEEEeccCcceEEEeeeeecCCCCcccceeEEEecCCCCCeeEecCCCccEEEE
Q 000725 1014 VQCILVC--EPKHLIAVGE----SGKLHLWEMNSSWSAQVEECIIPINDCIYPCIVEMKRIPKCAPLVVGHNGFGEFGIW 1087 (1329)
Q Consensus 1014 V~cIlVc--DpnhLVSaSd----DGkL~IWDM~SgWsm~tee~Vi~~n~~v~p~I~elKrFpkss~lIVTgSGDgtf~LW 1087 (1329)
-.|.+|. |.+||+++=+ |-.+.|||.+|+-+.+.+.--...-..-+...++- .++..+|++|..-..+.|.
T Consensus 105 Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cw---lrd~klvlaGm~sr~~~if 181 (783)
T KOG1008|consen 105 CTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCW---LRDTKLVLAGMTSRSVHIF 181 (783)
T ss_pred ccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCcccccc---ccCcchhhcccccchhhhh
Confidence 4567777 8899998843 45799999999866554441111101122223333 3556699999999999999
Q ss_pred Ecc-ccceeeeec--cCccceeE-ecccc-ccccccCcceEE-Ccchhhhc----cccccccccCCCceeecCCCCccce
Q 000725 1088 DIS-KRVLVSRFS--AARASIYQ-FFPIN-LFSWQRNGSVSM-DASLELTN----TATTSLFSKHSEKSSFCPSVGEDSA 1157 (1329)
Q Consensus 1088 DIs-kg~llqsF~--ahs~sV~s-fsP~~-s~S~d~~v~tfd-~~s~d~~l----eatv~~fSgdvn~VsF~P~sGeD~A 1157 (1329)
|.. +-...++|. .|.+.+.. |+|.- +...+|.|-+|| ...+|.-+ ..++...- ..-.+.|.|- . .|
T Consensus 182 dlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~~dg~iAiwD~~rnienpl~~i~~~~N~~~~-~l~~~aycPt-r--tg 257 (783)
T KOG1008|consen 182 DLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSNSDGDIAIWDTYRNIENPLQIILRNENKKPK-QLFALAYCPT-R--TG 257 (783)
T ss_pred hhhhhhhhhhhhhhhhcccceecCCCCCceeccccCceeeccchhhhccHHHHHhhCCCCccc-ceeeEEeccC-C--cc
Confidence 998 333355554 36666555 78877 445699999999 67776662 22221000 1223778872 2 35
Q ss_pred EEEEeeccCccchhhcccc----------------cccCCCCcc-eeEEEeee------ccceecCCCCCCCceeeecCC
Q 000725 1158 IWLLVSTISDSDAQHNCMS----------------RDCQKNPVR-FWRLALLV------KNRVILGSPLDPRASAIGASS 1214 (1329)
Q Consensus 1158 iwLLVST~Sdd~t~~Dlra----------------~~~~gH~n~-~wRLALl~------K~siI~Gs~ldpra~afs~SG 1214 (1329)
.-.-.+-.|..+++||++. +.|-.-|+. .=.++.+. -+.+|+|. ..-...+|++..
T Consensus 258 lla~l~RdS~tIrlydi~~v~t~~s~nn~~~~~~~s~~~~q~~~~~s~I~~f~wH~~s~~er~il~~-~nl~~~Df~V~e 336 (783)
T KOG1008|consen 258 LLAVLSRDSITIRLYDICVVGTEGSANNSVFVNYESKYPVQPNSQCSGIDFFTWHTASPTERQILGV-INLQPKDFSVHE 336 (783)
T ss_pred hhhhhccCcceEEEecccccCCcccccccceeeecccccccccccccceeecCcCcCCccceeEEee-ccCChhhccchh
Confidence 3333344566777788871 111111111 00111111 12344443 233457788888
Q ss_pred CeEEeecCCCeEEEE
Q 000725 1215 GLGIIGTNDGLVYAW 1229 (1329)
Q Consensus 1215 ~~gfaGT~DGlVYmW 1229 (1329)
.+.-+|++-+.=-+|
T Consensus 337 ~~~pa~s~p~n~L~~ 351 (783)
T KOG1008|consen 337 EVIPASSNPYNDLIF 351 (783)
T ss_pred heecccCCCcccchh
Confidence 888888864444444
No 346
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=68.74 E-value=4.2e+02 Score=35.81 Aligned_cols=176 Identities=13% Similarity=0.166 Sum_probs=105.0
Q ss_pred cccccceEEEEEEeeeCCCCCCCCc-----eeecccccccccccccccccccccceeeecCCCcEEEEecCccCccccCC
Q 000725 899 FLVDKKRTLFIYTVDIQEPRVGNPS-----CVGHTSVMLPFLKDNFGREIALERSCALFTPDGQYLVLLDSMKTPYCREG 973 (1329)
Q Consensus 899 ~L~~~~r~Lf~Yki~i~~~~~~~p~-----~vg~t~~llp~~~~~~~~~~~~ersglqFTPDGQ~LvLlgsik~p~CR~~ 973 (1329)
+=.+.+|.|=.|.+.+.+.....-. +-|-++ +.|-+.. .||-+-+++..+-+-+.+.+.+ ..|+
T Consensus 184 y~Ds~~~Hv~~yelnl~~ke~~~~~w~~~v~~~a~~-li~VP~~-~gGvlV~ge~~I~Y~~~~~~~a-----i~p~---- 252 (1096)
T KOG1897|consen 184 YKDSDGRHVKTYELNLRDKEFVKGPWSNNVDNGASM-LIPVPSP-IGGVLVIGEEFIVYMSGDNFVA-----IAPL---- 252 (1096)
T ss_pred EEcCCCcEEEEEEeccchhhccccccccccccCCce-eeecCCC-CceEEEEeeeEEEEeeCCceeE-----eccc----
Confidence 3456788889999999865544333 333332 2233322 2888889999999988888887 4454
Q ss_pred CccccccccccccCCCCcEEEEEecCcceeeeEEEecc--cce----------------eEEEEecCCeEEEecCCCeEE
Q 000725 974 RSDCLCSTCTSHRLDENAVKIVKVKPGYVSVVAKLKTD--DCV----------------QCILVCEPKHLIAVGESGKLH 1035 (1329)
Q Consensus 974 ~~dC~Cs~C~~s~seDNtVKIv~V~~G~vsll~kL~~h--~sV----------------~cIlVcDpnhLVSaSdDGkL~ 1035 (1329)
-..|.--.|-.--..++..-|++=..|++ ..=+-.| +.| .||..-|..+|..+|.=|.=+
T Consensus 253 ~~~~~t~~~~~~v~~~~~~yLl~d~~G~L--f~l~l~~~~e~~s~~~lkve~lge~siassi~~L~ng~lFvGS~~gdSq 330 (1096)
T KOG1897|consen 253 TAEQSTIVCYGRVDLQGSRYLLGDEDGML--FKLLLSHTGETVSGLDLKVEYLGETSIASSINYLDNGVLFVGSRFGDSQ 330 (1096)
T ss_pred ccCCceEEEcccccCCccEEEEecCCCcE--EEEEeecccccccceEEEEEecCCcchhhhhhcccCceEEEeccCCcee
Confidence 45566666777777888888888888883 2222222 333 345555999999999777655
Q ss_pred EEeccCcceEEEeeeeecCC-CCcccceeEE---EecCCCCCeeEecCC---CccEEEEEc
Q 000725 1036 LWEMNSSWSAQVEECIIPIN-DCIYPCIVEM---KRIPKCAPLVVGHNG---FGEFGIWDI 1089 (1329)
Q Consensus 1036 IWDM~SgWsm~tee~Vi~~n-~~v~p~I~el---KrFpkss~lIVTgSG---Dgtf~LWDI 1089 (1329)
+=.+++---. --|.+|+.+ .+.+ .|+++ +.+-.-..+|+||+| ||+.||-=-
T Consensus 331 Li~L~~e~d~-gsy~~ilet~~NLg-PI~Dm~Vvd~d~q~q~qivtCsGa~kdgSLRiiRn 389 (1096)
T KOG1897|consen 331 LIKLNTEPDV-GSYVVILETFVNLG-PIVDMCVVDLDRQGQGQIVTCSGAFKDGSLRIIRN 389 (1096)
T ss_pred eEEccccCCC-Cchhhhhhhccccc-ceeeEEEEeccccCCceEEEEeCCCCCCcEEEEec
Confidence 5555551111 111122111 1111 24443 233334678999988 677877533
No 347
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=68.21 E-value=2.6e+02 Score=33.26 Aligned_cols=221 Identities=11% Similarity=0.101 Sum_probs=109.2
Q ss_pred EEEe-cCCeEEEecCCC--eEEEEeccCcceEEEeeeeecCCCCcccceeEEEecCCCCCeeEecCCCccEEEEEccccc
Q 000725 1017 ILVC-EPKHLIAVGESG--KLHLWEMNSSWSAQVEECIIPINDCIYPCIVEMKRIPKCAPLVVGHNGFGEFGIWDISKRV 1093 (1329)
Q Consensus 1017 IlVc-DpnhLVSaSdDG--kL~IWDM~SgWsm~tee~Vi~~n~~v~p~I~elKrFpkss~lIVTgSGDgtf~LWDIskg~ 1093 (1329)
|++. |+..++..+..+ .|+|++..-.=.-+... +. ..|+.+ -|....+||+= ..||++++.|+. |+
T Consensus 43 IAi~~d~~k~~~~~~~~p~~I~iys~sG~ll~~i~w-----~~---~~iv~~-~wt~~e~LvvV-~~dG~v~vy~~~-G~ 111 (410)
T PF04841_consen 43 IAIIRDESKLVPVGSAKPNSIQIYSSSGKLLSSIPW-----DS---GRIVGM-GWTDDEELVVV-QSDGTVRVYDLF-GE 111 (410)
T ss_pred EEEEecCcccccccCCCCcEEEEECCCCCEeEEEEE-----CC---CCEEEE-EECCCCeEEEE-EcCCEEEEEeCC-Cc
Confidence 4555 776666653332 58888855442222222 11 568888 88886666654 489999999986 44
Q ss_pred e-------eeeeccCccceeE--eccccccccccCcceEECcchhhh-----c-ccccccc-----ccCCCceeecCCCC
Q 000725 1094 L-------VSRFSAARASIYQ--FFPINLFSWQRNGSVSMDASLELT-----N-TATTSLF-----SKHSEKSSFCPSVG 1153 (1329)
Q Consensus 1094 l-------lqsF~ahs~sV~s--fsP~~s~S~d~~v~tfd~~s~d~~-----l-eatv~~f-----Sgdvn~VsF~P~sG 1153 (1329)
. ++...-....|+. +...|..-..+..++|.+.+.++. + +....+. ........+..
T Consensus 112 ~~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~--- 188 (410)
T PF04841_consen 112 FQFSLGEEIEEEKVLECRIFAIWFYKNGIVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSS--- 188 (410)
T ss_pred eeechhhhccccCcccccccccccCCCCEEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeec---
Confidence 4 2222211222222 223443344555667777776643 1 1111111 00000011222
Q ss_pred ccceEEEEeeccCccchhhcccccccCCCCcceeEEEeeeccceecCCCCCCCceeeecCCCeEEeecCCCeEEEEEccc
Q 000725 1154 EDSAIWLLVSTISDSDAQHNCMSRDCQKNPVRFWRLALLVKNRVILGSPLDPRASAIGASSGLGIIGTNDGLVYAWELSS 1233 (1329)
Q Consensus 1154 eD~AiwLLVST~Sdd~t~~Dlra~~~~gH~n~~wRLALl~K~siI~Gs~ldpra~afs~SG~~gfaGT~DGlVYmWDLst 1233 (1329)
+. ...+++..+...-.+.+...+. .-..+.| ...++|++|++++.=+.+|.++++...-
T Consensus 189 ~~-~~~i~~~~g~~i~~i~~~~~~~--i~~~~~i------------------~~iavSpng~~iAl~t~~g~l~v~ssDf 247 (410)
T PF04841_consen 189 DR-VVEILLANGETIYIIDENSFKQ--IDSDGPI------------------IKIAVSPNGKFIALFTDSGNLWVVSSDF 247 (410)
T ss_pred Cc-ceEEEEecCCEEEEEEcccccc--ccCCCCe------------------EEEEECCCCCEEEEEECCCCEEEEECcc
Confidence 22 3444443332111111111110 0000111 3467899999999999999999998776
Q ss_pred cceeeeeecccCceEEEEEecCCCCceEEEecCCCCCCccccCC
Q 000725 1234 GNKLGILHHFKGGTVSCIATDDSGLQALAVAGDGPDGGRRQRDP 1277 (1329)
Q Consensus 1234 G~kL~tL~~Heg~rVSCVA~dps~p~~~AsA~d~~d~~~r~~~~ 1277 (1329)
.+++..+......+...++-. +.+.++.. |...+.+..|
T Consensus 248 ~~~~~e~~~~~~~~p~~~~WC--G~dav~l~---~~~~l~lvg~ 286 (410)
T PF04841_consen 248 SEKLCEFDTDSKSPPKQMAWC--GNDAVVLS---WEDELLLVGP 286 (410)
T ss_pred cceeEEeecCcCCCCcEEEEE--CCCcEEEE---eCCEEEEECC
Confidence 777766655422233333333 22333433 4555555554
No 348
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=67.85 E-value=14 Score=43.98 Aligned_cols=30 Identities=10% Similarity=0.346 Sum_probs=26.3
Q ss_pred ecCCeEEEecCCCeEEEEeccCcceEEEee
Q 000725 1020 CEPKHLIAVGESGKLHLWEMNSSWSAQVEE 1049 (1329)
Q Consensus 1020 cDpnhLVSaSdDGkL~IWDM~SgWsm~tee 1049 (1329)
.+..+|++.+.|++|+|||+.++=++.+.-
T Consensus 228 ~~~~~l~tl~~D~~LRiW~l~t~~~~~~~~ 257 (547)
T PF11715_consen 228 NDDTFLFTLSRDHTLRIWSLETGQCLATID 257 (547)
T ss_dssp ETTTEEEEEETTSEEEEEETTTTCEEEEEE
T ss_pred CCCCEEEEEeCCCeEEEEECCCCeEEEEec
Confidence 488999999999999999999998866543
No 349
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=66.80 E-value=12 Score=32.54 Aligned_cols=33 Identities=24% Similarity=0.473 Sum_probs=28.4
Q ss_pred cceeEEEEe-cCC---eEEEecCCCeEEEEeccCcce
Q 000725 1012 DCVQCILVC-EPK---HLIAVGESGKLHLWEMNSSWS 1044 (1329)
Q Consensus 1012 ~sV~cIlVc-Dpn---hLVSaSdDGkL~IWDM~SgWs 1044 (1329)
+.|+|+.++ +|. -|+-+++-|+++|||+.+++.
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~f~ 37 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSNFM 37 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccCcc
Confidence 468999999 665 899999999999999997554
No 350
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=64.11 E-value=45 Score=43.13 Aligned_cols=89 Identities=22% Similarity=0.281 Sum_probs=55.6
Q ss_pred eEEEEeeccCccchhhcccccccCCCCcceeEEEeeeccceecCCCCCCCceeeecC-------CCeEEeecCCCeEEEE
Q 000725 1157 AIWLLVSTISDSDAQHNCMSRDCQKNPVRFWRLALLVKNRVILGSPLDPRASAIGAS-------SGLGIIGTNDGLVYAW 1229 (1329)
Q Consensus 1157 AiwLLVST~Sdd~t~~Dlra~~~~gH~n~~wRLALl~K~siI~Gs~ldpra~afs~S-------G~~gfaGT~DGlVYmW 1229 (1329)
.+-||-....+..+++|+.--. .+.-|.+.- |.....+.++ ..--|.|.+++.|+.|
T Consensus 494 ~mil~~~~~~~~ly~mDLe~GK----VV~eW~~~~------------~~~v~~~~p~~K~aqlt~e~tflGls~n~lfri 557 (794)
T PF08553_consen 494 NMILLDPNNPNKLYKMDLERGK----VVEEWKVHD------------DIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRI 557 (794)
T ss_pred ceEeecCCCCCceEEEecCCCc----EEEEeecCC------------CcceeEecccccccccCCCceEEEECCCceEEe
Confidence 3333322344556667777444 777788541 1223445443 3456899999999999
Q ss_pred Eccc-cceeeee----ecccCceEEEEEecCCCCceEEEe
Q 000725 1230 ELSS-GNKLGIL----HHFKGGTVSCIATDDSGLQALAVA 1264 (1329)
Q Consensus 1230 DLst-G~kL~tL----~~Heg~rVSCVA~dps~p~~~AsA 1264 (1329)
|.-- |+++..- +...+ .-+|+|+.-.|. +|+|
T Consensus 558 DpR~~~~k~v~~~~k~Y~~~~-~Fs~~aTt~~G~--iavg 594 (794)
T PF08553_consen 558 DPRLSGNKLVDSQSKQYSSKN-NFSCFATTEDGY--IAVG 594 (794)
T ss_pred ccCCCCCceeeccccccccCC-CceEEEecCCce--EEEE
Confidence 9754 4555433 33445 689999996666 7888
No 351
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=63.52 E-value=3.3e+02 Score=32.72 Aligned_cols=51 Identities=12% Similarity=0.181 Sum_probs=35.7
Q ss_pred CCCceeeecCCCeEEeecCCCeEEEEEccccceeeeee-----cccCceEEEEEecC
Q 000725 1204 DPRASAIGASSGLGIIGTNDGLVYAWELSSGNKLGILH-----HFKGGTVSCIATDD 1255 (1329)
Q Consensus 1204 dpra~afs~SG~~gfaGT~DGlVYmWDLstG~kL~tL~-----~Heg~rVSCVA~dp 1255 (1329)
+-.+++.+.++.+++....+|.++.+++.......... ...+ .|+||.++|
T Consensus 448 ~~~I~~a~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-eis~l~i~p 503 (504)
T PF10433_consen 448 GSIIVAASINDPQVLVALSGGELVYFELDDNKISVSDNDETILELDN-EISCLSIEP 503 (504)
T ss_dssp S---SEEEESSSEEEEEE-TTEEEEEEEETTEEEEEEE----EE-SS--EEEEE---
T ss_pred CCeEEEEEECCCEEEEEEeCCcEEEEEEECCceeeeeeccccccCCC-ceEEEEeCC
Confidence 33778889999999999999999999998888865544 2567 799999986
No 352
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=63.48 E-value=2.3e+02 Score=36.61 Aligned_cols=114 Identities=21% Similarity=0.159 Sum_probs=63.0
Q ss_pred eeecCCCCccceEEEEeeccCccchhhcccccccCCCCcceeEEEeee---ccce----------ecCCCCCCCceeeec
Q 000725 1146 SSFCPSVGEDSAIWLLVSTISDSDAQHNCMSRDCQKNPVRFWRLALLV---KNRV----------ILGSPLDPRASAIGA 1212 (1329)
Q Consensus 1146 VsF~P~sGeD~AiwLLVST~Sdd~t~~Dlra~~~~gH~n~~wRLALl~---K~si----------I~Gs~ldpra~afs~ 1212 (1329)
|.+||.+-.|--.++| |-++..+.||+.. +..-|.+..+. +++. =||. +|++|..
T Consensus 152 v~WhP~s~~~~~l~vL--tsdn~lR~y~~~~------~~~p~~v~~~~~~~~~~~~~~~~~~~~~slge----~AV~FDf 219 (717)
T PF10168_consen 152 VRWHPWSESDSHLVVL--TSDNTLRLYDISD------PQHPWQVLSLSPGEKSSSLSSRGRSFLASLGE----TAVDFDF 219 (717)
T ss_pred EEEcCCCCCCCeEEEE--ecCCEEEEEecCC------CCCCeEEEEcccCcccccccCCCccccccchh----eeeeccc
Confidence 9999955556555555 9999999999962 22334444332 1111 2333 3343332
Q ss_pred C-----C--------C------eEEeecCCCeEEEEEccc-------cceeeeee------cccCceEEEEEecCCCCce
Q 000725 1213 S-----S--------G------LGIIGTNDGLVYAWELSS-------GNKLGILH------HFKGGTVSCIATDDSGLQA 1260 (1329)
Q Consensus 1213 S-----G--------~------~gfaGT~DGlVYmWDLst-------G~kL~tL~------~Heg~rVSCVA~dps~p~~ 1260 (1329)
. . + -+|.=.++|.||+=-..- ++..|.|. .+-|.-.-+|.+=|+-|.+
T Consensus 220 gP~~~~~~~~~~~~~~~~~~~~p~~vL~~ng~v~~~~~~l~~~~~~~~~~~gpl~~~p~~~dnyg~d~c~i~~l~~~p~~ 299 (717)
T PF10168_consen 220 GPLDTSPKTLTGQKSKQEKIEWPIFVLRENGDVYLLYTSLQDENSNLPKLQGPLPMQPPADDNYGLDACSILCLPSLPPV 299 (717)
T ss_pred ccccccccccccccCCCCceeccEEEEecCCCEEEEEEecccCccccceecCceecCCCCcccCCCceeeEEEecCCCCE
Confidence 1 1 1 266677888888865544 22223331 2233344455555777888
Q ss_pred EEEecCCCCCCcc
Q 000725 1261 LAVAGDGPDGGRR 1273 (1329)
Q Consensus 1261 ~AsA~d~~d~~~r 1273 (1329)
+++|+. +|+|-
T Consensus 300 ~via~~--~G~l~ 310 (717)
T PF10168_consen 300 LVIATS--NGKLY 310 (717)
T ss_pred EEEEec--CCeEE
Confidence 999954 44443
No 353
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=63.46 E-value=11 Score=28.55 Aligned_cols=27 Identities=33% Similarity=0.555 Sum_probs=23.0
Q ss_pred CCCeEEeecCCCeEEEEEccccceeee
Q 000725 1213 SSGLGIIGTNDGLVYAWELSSGNKLGI 1239 (1329)
Q Consensus 1213 SG~~gfaGT~DGlVYmWDLstG~kL~t 1239 (1329)
.++.+++|+.||.+|..|..+|+.+=.
T Consensus 5 ~~~~v~~~~~~g~l~a~d~~~G~~~W~ 31 (33)
T smart00564 5 SDGTVYVGSTDGTLYALDAKTGEILWT 31 (33)
T ss_pred ECCEEEEEcCCCEEEEEEcccCcEEEE
Confidence 456799999999999999999987643
No 354
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=62.81 E-value=2.8e+02 Score=31.80 Aligned_cols=230 Identities=13% Similarity=0.061 Sum_probs=116.1
Q ss_pred ecCCCCCeeE-----ecCCCccEEEEEccccceee-eeccCccceeEeccccc----ccc-----------ccCcceEEC
Q 000725 1067 RIPKCAPLVV-----GHNGFGEFGIWDISKRVLVS-RFSAARASIYQFFPINL----FSW-----------QRNGSVSMD 1125 (1329)
Q Consensus 1067 rFpkss~lIV-----TgSGDgtf~LWDIskg~llq-sF~ahs~sV~sfsP~~s----~S~-----------d~~v~tfd~ 1125 (1329)
.+++++.+|+ +|+...++++.|+++|+.+. .|......=+.+.+++. -.+ ...|..|..
T Consensus 130 ~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~ 209 (414)
T PF02897_consen 130 SVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKL 209 (414)
T ss_dssp EETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEET
T ss_pred eECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEEC
Confidence 6677777665 45556789999999999865 44544433256777751 111 222444455
Q ss_pred cchhhh--c--cccccc--cccCCCceeecCCCCccceEEEEeeccCccc----hhhcccccccCCCCcceeEEEeeecc
Q 000725 1126 ASLELT--N--TATTSL--FSKHSEKSSFCPSVGEDSAIWLLVSTISDSD----AQHNCMSRDCQKNPVRFWRLALLVKN 1195 (1329)
Q Consensus 1126 ~s~d~~--l--eatv~~--fSgdvn~VsF~P~sGeD~AiwLLVST~Sdd~----t~~Dlra~~~~gH~n~~wRLALl~K~ 1195 (1329)
++.... + +..... +-. +..++ | +.||+++..+... ...|+.... .+...|++-. +
T Consensus 210 gt~~~~d~lvfe~~~~~~~~~~----~~~s~----d-~~~l~i~~~~~~~~s~v~~~d~~~~~---~~~~~~~~l~--~- 274 (414)
T PF02897_consen 210 GTPQSEDELVFEEPDEPFWFVS----VSRSK----D-GRYLFISSSSGTSESEVYLLDLDDGG---SPDAKPKLLS--P- 274 (414)
T ss_dssp TS-GGG-EEEEC-TTCTTSEEE----EEE-T----T-SSEEEEEEESSSSEEEEEEEECCCTT---TSS-SEEEEE--E-
T ss_pred CCChHhCeeEEeecCCCcEEEE----EEecC----c-ccEEEEEEEccccCCeEEEEeccccC---CCcCCcEEEe--C-
Confidence 544333 1 211111 112 55565 6 7888887766665 223333221 2334455321 1
Q ss_pred ceecCCCCCCCceeeecCCCeEEeecCC----CeEEEEEccccce---eeeeecccC-ceEEEEEecCCCCceEEEecCC
Q 000725 1196 RVILGSPLDPRASAIGASSGLGIIGTND----GLVYAWELSSGNK---LGILHHFKG-GTVSCIATDDSGLQALAVAGDG 1267 (1329)
Q Consensus 1196 siI~Gs~ldpra~afs~SG~~gfaGT~D----GlVYmWDLstG~k---L~tL~~Heg-~rVSCVA~dps~p~~~AsA~d~ 1267 (1329)
..+-....+...|..++.-|++ |.|..=++.+... -..+-.|.. ..+..+++. +..-++.--..
T Consensus 275 ------~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~--~~~Lvl~~~~~ 346 (414)
T PF02897_consen 275 ------REDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLF--KDYLVLSYREN 346 (414)
T ss_dssp ------SSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEE--TTEEEEEEEET
T ss_pred ------CCCceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEE--CCEEEEEEEEC
Confidence 1122223344457666665544 6777778887763 225555554 234444433 34434444444
Q ss_pred CCCCccccCCCCCCCCcEEEeeeCCCcceeecCCCCcccceEEEeeeccccccce
Q 000725 1268 PDGGRRQRDPRHGQNDHVRIWKMDPNLGCVRNSNGDSKFKQFQISIKETKLPAHI 1322 (1329)
Q Consensus 1268 ~d~~~r~~~~~~s~D~~VRiW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1322 (1329)
....|++++.. .+....=.-.|..|.+-..+++-.-..+-+++---..|..+
T Consensus 347 ~~~~l~v~~~~---~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~ 398 (414)
T PF02897_consen 347 GSSRLRVYDLD---DGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTV 398 (414)
T ss_dssp TEEEEEEEETT----TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEE
T ss_pred CccEEEEEECC---CCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEE
Confidence 55556666653 23333334445667766666666666777777666666544
No 355
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=60.79 E-value=10 Score=47.63 Aligned_cols=102 Identities=18% Similarity=0.133 Sum_probs=58.8
Q ss_pred eEEEEeeccCccchhhccc--ccccCCCCcceeEEEeeeccceecCCCCCCCceeeec-CCCeEEeecCCCeEEEEEc-c
Q 000725 1157 AIWLLVSTISDSDAQHNCM--SRDCQKNPVRFWRLALLVKNRVILGSPLDPRASAIGA-SSGLGIIGTNDGLVYAWEL-S 1232 (1329)
Q Consensus 1157 AiwLLVST~Sdd~t~~Dlr--a~~~~gH~n~~wRLALl~K~siI~Gs~ldpra~afs~-SG~~gfaGT~DGlVYmWDL-s 1232 (1329)
-+.+|.|..+-....+|+| ..+++- ++....=| ..+.| +++|+. .+.||.|-+||. -
T Consensus 166 ~klvlaGm~sr~~~ifdlRqs~~~~~s-----------vnTk~vqG-------~tVdp~~~nY~c-s~~dg~iAiwD~~r 226 (783)
T KOG1008|consen 166 TKLVLAGMTSRSVHIFDLRQSLDSVSS-----------VNTKYVQG-------ITVDPFSPNYFC-SNSDGDIAIWDTYR 226 (783)
T ss_pred cchhhcccccchhhhhhhhhhhhhhhh-----------hhhhhccc-------ceecCCCCCcee-ccccCceeeccchh
Confidence 4566667777778889998 221100 00001112 23444 566654 555999999993 1
Q ss_pred -ccceeeeeecccC---ceEEEEEecCCCCceEEEecCCCCCCccccCCC
Q 000725 1233 -SGNKLGILHHFKG---GTVSCIATDDSGLQALAVAGDGPDGGRRQRDPR 1278 (1329)
Q Consensus 1233 -tG~kL~tL~~Heg---~rVSCVA~dps~p~~~AsA~d~~d~~~r~~~~~ 1278 (1329)
--+-+..+..-+| -++..+|+.|++++-+|+.+ --.+|||+++++
T Consensus 227 nienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~-RdS~tIrlydi~ 275 (783)
T KOG1008|consen 227 NIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLS-RDSITIRLYDIC 275 (783)
T ss_pred hhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhc-cCcceEEEeccc
Confidence 1223333444444 04999999999998788884 234555555554
No 356
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=59.76 E-value=12 Score=32.45 Aligned_cols=30 Identities=23% Similarity=0.357 Sum_probs=27.3
Q ss_pred ceeeecCCCeEEeecCCCeEEEEEcccccee
Q 000725 1207 ASAIGASSGLGIIGTNDGLVYAWELSSGNKL 1237 (1329)
Q Consensus 1207 a~afs~SG~~gfaGT~DGlVYmWDLstG~kL 1237 (1329)
.++.+|...+++.|++||.|+++.+ +|+++
T Consensus 16 ~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qri 45 (47)
T PF12894_consen 16 CMSWCPTMDLIALGTEDGEVLVYRL-NWQRI 45 (47)
T ss_pred EEEECCCCCEEEEEECCCeEEEEEC-CCcCc
Confidence 4889999999999999999999999 77764
No 357
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=59.02 E-value=10 Score=47.35 Aligned_cols=49 Identities=18% Similarity=0.411 Sum_probs=40.4
Q ss_pred ceeeecCCCcEEEEecCccCccccCCCccccccccccccCCCCcEEEEEecCcceeeeEEEecccceeEEEEecCCeEEE
Q 000725 948 SCALFTPDGQYLVLLDSMKTPYCREGRSDCLCSTCTSHRLDENAVKIVKVKPGYVSVVAKLKTDDCVQCILVCEPKHLIA 1027 (1329)
Q Consensus 948 sglqFTPDGQ~LvLlgsik~p~CR~~~~dC~Cs~C~~s~seDNtVKIv~V~~G~vsll~kL~~h~sV~cIlVcDpnhLVS 1027 (1329)
.+++|-|||.+|+ .+.+|++|+|-||.+|. .++- . +.|
T Consensus 66 ~sL~W~~DGklla------------------------Vg~kdG~I~L~Dve~~~--~l~~-------------~---~~s 103 (665)
T KOG4640|consen 66 ASLCWRPDGKLLA------------------------VGFKDGTIRLHDVEKGG--RLVS-------------F---LFS 103 (665)
T ss_pred eeeeecCCCCEEE------------------------EEecCCeEEEEEccCCC--ceec-------------c---ccc
Confidence 5799999999999 99999999999999998 2222 1 456
Q ss_pred ecCCCeEEEEe
Q 000725 1028 VGESGKLHLWE 1038 (1329)
Q Consensus 1028 aSdDGkL~IWD 1038 (1329)
..+|.+-.+|+
T Consensus 104 ~e~~is~~~w~ 114 (665)
T KOG4640|consen 104 VETDISKGIWD 114 (665)
T ss_pred cccchheeecc
Confidence 77777888887
No 358
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=58.66 E-value=1.9e+02 Score=33.37 Aligned_cols=117 Identities=13% Similarity=0.041 Sum_probs=75.7
Q ss_pred ceeeecCCCcEEEEecCccCccccCCCccccccccccccC--CCCcEEEEEecCcceeeeEEEecccceeEEEEecCCeE
Q 000725 948 SCALFTPDGQYLVLLDSMKTPYCREGRSDCLCSTCTSHRL--DENAVKIVKVKPGYVSVVAKLKTDDCVQCILVCEPKHL 1025 (1329)
Q Consensus 948 sglqFTPDGQ~LvLlgsik~p~CR~~~~dC~Cs~C~~s~s--eDNtVKIv~V~~G~vsll~kL~~h~sV~cIlVcDpnhL 1025 (1329)
-||+|-.||+++. +.+ ....|+.|++++|.+-..+.|....==-.|.+.+.+-.
T Consensus 48 QGL~~~~~g~LyE------------------------STG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~ 103 (264)
T PF05096_consen 48 QGLEFLDDGTLYE------------------------STGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLY 103 (264)
T ss_dssp EEEEEEETTEEEE------------------------EECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEE
T ss_pred ccEEecCCCEEEE------------------------eCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEE
Confidence 4889999999888 333 34589999999999777777777644455666655555
Q ss_pred EEecCCCeEEEEeccCcceEEEeeeeecCCCCcccceeEEEecCCCCCeeEecCCCccEEEEEccccceeeeec
Q 000725 1026 IAVGESGKLHLWEMNSSWSAQVEECIIPINDCIYPCIVEMKRIPKCAPLVVGHNGFGEFGIWDISKRVLVSRFS 1099 (1329)
Q Consensus 1026 VSaSdDGkL~IWDM~SgWsm~tee~Vi~~n~~v~p~I~elKrFpkss~lIVTgSGDgtf~LWDIskg~llqsF~ 1099 (1329)
.=-=.+|+.++||.++--.+.++.| + +-+ +.| . .+++.++..+|..++..+|-++-+.+.++.
T Consensus 104 qLTWk~~~~f~yd~~tl~~~~~~~y--~---~EG---WGL-t--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~ 166 (264)
T PF05096_consen 104 QLTWKEGTGFVYDPNTLKKIGTFPY--P---GEG---WGL-T--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQ 166 (264)
T ss_dssp EEESSSSEEEEEETTTTEEEEEEE---S---SS-----EE-E--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE
T ss_pred EEEecCCeEEEEccccceEEEEEec--C---Ccc---eEE-E--cCCCEEEEECCccceEEECCcccceEEEEE
Confidence 5556799999999988555554442 1 122 333 2 345667777888999999987766655543
No 359
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=58.61 E-value=1e+02 Score=31.51 Aligned_cols=27 Identities=7% Similarity=0.204 Sum_probs=22.7
Q ss_pred ceeEEEEe--cC---CeEEEecCCCeEEEEec
Q 000725 1013 CVQCILVC--EP---KHLIAVGESGKLHLWEM 1039 (1329)
Q Consensus 1013 sV~cIlVc--Dp---nhLVSaSdDGkL~IWDM 1039 (1329)
.|.++++| |. +.|+.+|+|..|+||+=
T Consensus 1 ~V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~ 32 (111)
T PF14783_consen 1 NVTALCLFDFDGDGENELLVGSDDFEIRVFKG 32 (111)
T ss_pred CeeEEEEEecCCCCcceEEEecCCcEEEEEeC
Confidence 37788888 33 79999999999999993
No 360
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=57.31 E-value=3.8e+02 Score=33.08 Aligned_cols=217 Identities=15% Similarity=0.109 Sum_probs=112.7
Q ss_pred CCCCcEEEEEecCcceeeeEEEec--cccee----------EEEEecCCeEEEecCCCeEEEEeccCcceEEEeeeeecC
Q 000725 987 LDENAVKIVKVKPGYVSVVAKLKT--DDCVQ----------CILVCEPKHLIAVGESGKLHLWEMNSSWSAQVEECIIPI 1054 (1329)
Q Consensus 987 seDNtVKIv~V~~G~vsll~kL~~--h~sV~----------cIlVcDpnhLVSaSdDGkL~IWDM~SgWsm~tee~Vi~~ 1054 (1329)
+.++.|.-+|.++|. ++=++.. ...+. .+++-+ .+|+.+..||+|+--|..||-..-.....-+.
T Consensus 76 s~~g~v~AlDa~TGk--~lW~~~~~~~~~~~~~~~~~~~~rg~av~~-~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~ 152 (527)
T TIGR03075 76 TSYSRVYALDAKTGK--ELWKYDPKLPDDVIPVMCCDVVNRGVALYD-GKVFFGTLDARLVALDAKTGKVVWSKKNGDYK 152 (527)
T ss_pred CCCCcEEEEECCCCc--eeeEecCCCCcccccccccccccccceEEC-CEEEEEcCCCEEEEEECCCCCEEeeccccccc
Confidence 335567777888887 3333322 11221 134444 35566677999999999888665544421111
Q ss_pred CC--CcccceeEEEecCCCCCeeEecC-----CCccEEEEEccccceeeeeccCccc-e--eE-ecc----ccccccc--
Q 000725 1055 ND--CIYPCIVEMKRIPKCAPLVVGHN-----GFGEFGIWDISKRVLVSRFSAARAS-I--YQ-FFP----INLFSWQ-- 1117 (1329)
Q Consensus 1055 n~--~v~p~I~elKrFpkss~lIVTgS-----GDgtf~LWDIskg~llqsF~ahs~s-V--~s-fsP----~~s~S~d-- 1117 (1329)
.. -.++.++- .+.+|++.+ .+|.+...|.++|+.+=+|+.-... . .. +.+ -+.-+|.
T Consensus 153 ~~~~~tssP~v~------~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~ 226 (527)
T TIGR03075 153 AGYTITAAPLVV------KGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGD 226 (527)
T ss_pred ccccccCCcEEE------CCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCCC
Confidence 11 11111111 244555543 3789999999999998776642111 0 00 000 0011222
Q ss_pred ----cCcceEECcchhhhc----ccccc--ccccCCCceeecCCCCccceEEEEeeccCccchhhccc----ccccCCCC
Q 000725 1118 ----RNGSVSMDASLELTN----TATTS--LFSKHSEKSSFCPSVGEDSAIWLLVSTISDSDAQHNCM----SRDCQKNP 1183 (1329)
Q Consensus 1118 ----~~v~tfd~~s~d~~l----eatv~--~fSgdvn~VsF~P~sGeD~AiwLLVST~Sdd~t~~Dlr----a~~~~gH~ 1183 (1329)
+-..+|...+.|..+ ..+.. ++.+.. .| |++ + -+++.-..|+. .=+||..+
T Consensus 227 ~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~-----r~--gdn----l----~~~s~vAld~~TG~~~W~~Q~~~ 291 (527)
T TIGR03075 227 AWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHL-----RP--GDN----L----YTSSIVARDPDTGKIKWHYQTTP 291 (527)
T ss_pred ccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCC-----CC--CCC----c----cceeEEEEccccCCEEEeeeCCC
Confidence 345777777777651 11111 122200 01 222 0 01122223433 11344444
Q ss_pred cceeEEEeeeccceecCCCCCCCceeeecCCC---eEEeecCCCeEEEEEcccccee
Q 000725 1184 VRFWRLALLVKNRVILGSPLDPRASAIGASSG---LGIIGTNDGLVYAWELSSGNKL 1237 (1329)
Q Consensus 1184 n~~wRLALl~K~siI~Gs~ldpra~afs~SG~---~gfaGT~DGlVYmWDLstG~kL 1237 (1329)
.-.|-.. .+-.|-..++...|+ .++.++-+|.+|+-|=.||+.+
T Consensus 292 ~D~wD~d----------~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 292 HDEWDYD----------GVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred CCCcccc----------CCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 4555433 223445556656787 8889999999999999999876
No 361
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=56.89 E-value=23 Score=41.78 Aligned_cols=138 Identities=14% Similarity=0.214 Sum_probs=84.6
Q ss_pred ccccceeeecCCCcEEEEecCccCccccCCCccccccccccccCCCCcEEEEEecCcceeeeEEE----ecccceeEEEE
Q 000725 944 ALERSCALFTPDGQYLVLLDSMKTPYCREGRSDCLCSTCTSHRLDENAVKIVKVKPGYVSVVAKL----KTDDCVQCILV 1019 (1329)
Q Consensus 944 ~~ersglqFTPDGQ~LvLlgsik~p~CR~~~~dC~Cs~C~~s~seDNtVKIv~V~~G~vsll~kL----~~h~sV~cIlV 1019 (1329)
+.-..++.|+.|-+.++--.-.|.---. .-=-|....||+++.-..+-++.. +=|+.
T Consensus 172 ~yhiNSiS~NsD~et~lSaDdLrINLWn-------------l~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~------ 232 (460)
T COG5170 172 PYHINSISFNSDKETLLSADDLRINLWN-------------LEIIDGSFNIVDIKPHNMEELTEVITSAEFHPE------ 232 (460)
T ss_pred eeEeeeeeecCchheeeeccceeeeecc-------------ccccCCceEEEeccCccHHHHHHHHhhcccCHh------
Confidence 3466789999999998822222221111 011255667777776654333322 22322
Q ss_pred ecCCeEEEecCCCeEEEEeccCcc----eEEEee-eeecCCCC----cccceeEEEecCCCCCeeEecCCCccEEEEEcc
Q 000725 1020 CEPKHLIAVGESGKLHLWEMNSSW----SAQVEE-CIIPINDC----IYPCIVEMKRIPKCAPLVVGHNGFGEFGIWDIS 1090 (1329)
Q Consensus 1020 cDpnhLVSaSdDGkL~IWDM~SgW----sm~tee-~Vi~~n~~----v~p~I~elKrFpkss~lIVTgSGDgtf~LWDIs 1090 (1329)
.-+++.=++-.|.|++-||.-.- ..++++ ++-+.+.. +.++|-.+ .|.+++.+|++.++ -|++|||+.
T Consensus 233 -~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~-kFs~ngryIlsRdy-ltvkiwDvn 309 (460)
T COG5170 233 -MCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDF-KFSDNGRYILSRDY-LTVKIWDVN 309 (460)
T ss_pred -HcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcce-EEcCCCcEEEEecc-ceEEEEecc
Confidence 23555556669999999987321 123333 23244433 55677778 89999999999987 589999997
Q ss_pred cc-ceeeeeccCcc
Q 000725 1091 KR-VLVSRFSAARA 1103 (1329)
Q Consensus 1091 kg-~llqsF~ahs~ 1103 (1329)
-- +++.++..|-.
T Consensus 310 m~k~pikTi~~h~~ 323 (460)
T COG5170 310 MAKNPIKTIPMHCD 323 (460)
T ss_pred cccCCceeechHHH
Confidence 54 45888876653
No 362
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=56.48 E-value=1.2e+02 Score=37.18 Aligned_cols=139 Identities=11% Similarity=0.058 Sum_probs=74.4
Q ss_pred ccceeeecCCCcEEEEecCccCccccCCCccccccccccccCCCCcEEEEEecCcceeeeEEEe------cccceeEEEE
Q 000725 946 ERSCALFTPDGQYLVLLDSMKTPYCREGRSDCLCSTCTSHRLDENAVKIVKVKPGYVSVVAKLK------TDDCVQCILV 1019 (1329)
Q Consensus 946 ersglqFTPDGQ~LvLlgsik~p~CR~~~~dC~Cs~C~~s~seDNtVKIv~V~~G~vsll~kL~------~h~sV~cIlV 1019 (1329)
.=++|.|-|||+.|| ..-..+.|++|+...+...++..|. +..++..|++
T Consensus 31 ~Pw~maflPDG~llV------------------------tER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal 86 (454)
T TIGR03606 31 KPWALLWGPDNQLWV------------------------TERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLAL 86 (454)
T ss_pred CceEEEEcCCCeEEE------------------------EEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEE
Confidence 568999999999999 2222478999987766544444332 3478899988
Q ss_pred ecCC--------eEEEe--c--------CCCeEEEEeccC-cceEEEee--ee-ecCCCCcccceeEEEecCCCCCeeE-
Q 000725 1020 CEPK--------HLIAV--G--------ESGKLHLWEMNS-SWSAQVEE--CI-IPINDCIYPCIVEMKRIPKCAPLVV- 1076 (1329)
Q Consensus 1020 cDpn--------hLVSa--S--------dDGkL~IWDM~S-gWsm~tee--~V-i~~n~~v~p~I~elKrFpkss~lIV- 1076 (1329)
- |+ +|.-+ . ...+|.-|.+.. +....-.. +. +|...+|+..-+ +|-+++.|.|
T Consensus 87 ~-PdF~~~~~n~~lYvsyt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI---~FgPDG~LYVs 162 (454)
T TIGR03606 87 H-PDFMQEKGNPYVYISYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRL---VFGPDGKIYYT 162 (454)
T ss_pred C-CCccccCCCcEEEEEEeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceE---EECCCCcEEEE
Confidence 4 33 23322 1 123455555542 11111112 22 255555665544 5778888877
Q ss_pred ecCCCccE--EEEE------cccccee--eeeccCccceeEecccc
Q 000725 1077 GHNGFGEF--GIWD------ISKRVLV--SRFSAARASIYQFFPIN 1112 (1329)
Q Consensus 1077 TgSGDgtf--~LWD------Iskg~ll--qsF~ahs~sV~sfsP~~ 1112 (1329)
+|+..... ..-+ +...+.+ +....|.+.|+-+.|++
T Consensus 163 ~GD~g~~~~~n~~~~~~aQ~~~~~~~~~~~d~~~~~GkILRin~DG 208 (454)
T TIGR03606 163 IGEQGRNQGANFFLPNQAQHTPTQQELNGKDYHAYMGKVLRLNLDG 208 (454)
T ss_pred ECCCCCCCcccccCcchhccccccccccccCcccCceEEEEEcCCC
Confidence 45442111 0000 0000001 24556777888888776
No 363
>PHA02713 hypothetical protein; Provisional
Probab=55.81 E-value=1.4e+02 Score=36.78 Aligned_cols=106 Identities=7% Similarity=-0.029 Sum_probs=65.1
Q ss_pred CcEEEEEecCcceeeeEEEecccceeEEEEecCCeEEEecCCC------eEEEEeccC--cceEEEeeeeecCCCCcccc
Q 000725 990 NAVKIVKVKPGYVSVVAKLKTDDCVQCILVCEPKHLIAVGESG------KLHLWEMNS--SWSAQVEECIIPINDCIYPC 1061 (1329)
Q Consensus 990 NtVKIv~V~~G~vsll~kL~~h~sV~cIlVcDpnhLVSaSdDG------kL~IWDM~S--gWsm~tee~Vi~~n~~v~p~ 1061 (1329)
++|-.+|+.+..-+.+..+..-..-.++++.+...-|.+|-++ .+..+|..+ .|....-- +..-....
T Consensus 432 ~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m----~~~r~~~~ 507 (557)
T PHA02713 432 NKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTT----ESRLSALH 507 (557)
T ss_pred ceEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEcccc----Ccccccce
Confidence 5677788888765555555333333456666655555555432 467899887 69753321 11111222
Q ss_pred eeEEEecCCCCCeeEecCCCc--cEEEEEccccceeeeeccCccc
Q 000725 1062 IVEMKRIPKCAPLVVGHNGFG--EFGIWDISKRVLVSRFSAARAS 1104 (1329)
Q Consensus 1062 I~elKrFpkss~lIVTgSGDg--tf~LWDIskg~llqsF~ahs~s 1104 (1329)
+..+ .+.+.|.|+.|| ++-.+|+.+.+-....+.|+++
T Consensus 508 ~~~~-----~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~~~~~~~~ 547 (557)
T PHA02713 508 TILH-----DNTIMMLHCYESYMLQDTFNVYTYEWNHICHQHSNS 547 (557)
T ss_pred eEEE-----CCEEEEEeeecceeehhhcCcccccccchhhhcCCc
Confidence 2222 467777888787 7888999998888888888776
No 364
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=55.07 E-value=46 Score=36.32 Aligned_cols=33 Identities=24% Similarity=0.472 Sum_probs=26.7
Q ss_pred EEEEecCCeEEEecCCCeEEEEeccCcceEEEe
Q 000725 1016 CILVCEPKHLIAVGESGKLHLWEMNSSWSAQVE 1048 (1329)
Q Consensus 1016 cIlVcDpnhLVSaSdDGkL~IWDM~SgWsm~te 1048 (1329)
+++-|...+|.+...+|.|++||+.++-++-..
T Consensus 16 ~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~ 48 (219)
T PF07569_consen 16 SFLECNGSYLLAITSSGLLYVWNLKKGKAVLPP 48 (219)
T ss_pred EEEEeCCCEEEEEeCCCeEEEEECCCCeeccCC
Confidence 456678999999999999999999986554433
No 365
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=54.90 E-value=3e+02 Score=29.56 Aligned_cols=227 Identities=11% Similarity=0.092 Sum_probs=110.5
Q ss_pred ccCCCCcEEEEEecCcceeeeEEEecccceeEEEEe-cCCeEEEecCCCeEEEEeccCcceEEEee-----------eee
Q 000725 985 HRLDENAVKIVKVKPGYVSVVAKLKTDDCVQCILVC-EPKHLIAVGESGKLHLWEMNSSWSAQVEE-----------CII 1052 (1329)
Q Consensus 985 s~seDNtVKIv~V~~G~vsll~kL~~h~sV~cIlVc-DpnhLVSaSdDGkL~IWDM~SgWsm~tee-----------~Vi 1052 (1329)
.|.+++ |-++++..+. ... +....-.|.-+.+. +-+.|+.-+ ||+|+++++++--...... ..+
T Consensus 12 vGt~~G-l~~~~~~~~~-~~~-~i~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~ 87 (275)
T PF00780_consen 12 VGTEDG-LYVYDLSDPS-KPT-RILKLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKL 87 (275)
T ss_pred EEECCC-EEEEEecCCc-cce-eEeecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccccccccc
Confidence 455555 7777772211 122 22222237777777 778888888 4999999977633333111 011
Q ss_pred cCCCCcccceeEEEecCCCCCeeEecCCCccEEEEEcccc-----ceeeeeccCccceeE--ecccc-ccccccCcceEE
Q 000725 1053 PINDCIYPCIVEMKRIPKCAPLVVGHNGFGEFGIWDISKR-----VLVSRFSAARASIYQ--FFPIN-LFSWQRNGSVSM 1124 (1329)
Q Consensus 1053 ~~n~~v~p~I~elKrFpkss~lIVTgSGDgtf~LWDIskg-----~llqsF~ahs~sV~s--fsP~~-s~S~d~~v~tfd 1124 (1329)
+..+++.-.. . .-...+...+-..-..++.||..... ..++.|.-+.. +.. |.+.. .....+..-+.+
T Consensus 88 ~~~~~v~~f~--~-~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~-~~~i~~~~~~i~v~~~~~f~~id 163 (275)
T PF00780_consen 88 PETKGVSFFA--V-NGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDP-PSSIAFLGNKICVGTSKGFYLID 163 (275)
T ss_pred cccCCeeEEe--e-ccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCC-cEEEEEeCCEEEEEeCCceEEEe
Confidence 2222111100 0 11122223333333448888888763 46777776633 333 55444 444454455555
Q ss_pred Ccchhhh-c---ccccccccc---CCCceeecCCCCccceEEEEeeccCccchhhccc--ccccCCCCcceeEEEeeecc
Q 000725 1125 DASLELT-N---TATTSLFSK---HSEKSSFCPSVGEDSAIWLLVSTISDSDAQHNCM--SRDCQKNPVRFWRLALLVKN 1195 (1329)
Q Consensus 1125 ~~s~d~~-l---eatv~~fSg---dvn~VsF~P~sGeD~AiwLLVST~Sdd~t~~Dlr--a~~~~gH~n~~wRLALl~K~ 1195 (1329)
..++.-. + ....+.+.. ....+.....+ ++ -+|| |+|-. --+..|.+.+ +.
T Consensus 164 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--e~Ll---------~~~~~g~fv~~~G~~~r--------~~ 223 (275)
T PF00780_consen 164 LNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS-DN--EFLL---------CYDNIGVFVNKNGEPSR--------KS 223 (275)
T ss_pred cCCCCceEEeCccCCcchhhhcccCCCceEEEEeC-Cc--eEEE---------EecceEEEEcCCCCcCc--------cc
Confidence 5544333 1 111111111 00001111110 11 2222 12222 1111233333 23
Q ss_pred ceecCCCCCCCceeeecCCCeEEeecCCCeEEEEEccccceeeeeeccc
Q 000725 1196 RVILGSPLDPRASAIGASSGLGIIGTNDGLVYAWELSSGNKLGILHHFK 1244 (1329)
Q Consensus 1196 siI~Gs~ldpra~afs~SG~~gfaGT~DGlVYmWDLstG~kL~tL~~He 1244 (1329)
.|-... .|. ++.....|+++-+.++ |.+|++.+|+.++++...+
T Consensus 224 ~i~W~~--~p~--~~~~~~pyli~~~~~~-iEV~~~~~~~lvQ~i~~~~ 267 (275)
T PF00780_consen 224 TIQWSS--APQ--SVAYSSPYLIAFSSNS-IEVRSLETGELVQTIPLPN 267 (275)
T ss_pred EEEcCC--chh--EEEEECCEEEEECCCE-EEEEECcCCcEEEEEECCC
Confidence 344444 444 4555788999977755 9999999999999998544
No 366
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=54.69 E-value=17 Score=29.28 Aligned_cols=26 Identities=35% Similarity=0.552 Sum_probs=22.2
Q ss_pred CeEEeecCCCeEEEEEccccceeeee
Q 000725 1215 GLGIIGTNDGLVYAWELSSGNKLGIL 1240 (1329)
Q Consensus 1215 ~~gfaGT~DGlVYmWDLstG~kL~tL 1240 (1329)
+.+++|+.||.||.-|..||+.+=..
T Consensus 1 ~~v~~~~~~g~l~AlD~~TG~~~W~~ 26 (38)
T PF01011_consen 1 GRVYVGTPDGYLYALDAKTGKVLWKF 26 (38)
T ss_dssp TEEEEETTTSEEEEEETTTTSEEEEE
T ss_pred CEEEEeCCCCEEEEEECCCCCEEEee
Confidence 35788899999999999999987544
No 367
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=54.19 E-value=1.7e+02 Score=36.66 Aligned_cols=126 Identities=16% Similarity=0.162 Sum_probs=94.2
Q ss_pred EEEEEecCcceeeeEEEecccceeEEEEe-cCCeEEEecCCC-eEEEEeccCcceEEEeeeeecCCCCcccceeEEEecC
Q 000725 992 VKIVKVKPGYVSVVAKLKTDDCVQCILVC-EPKHLIAVGESG-KLHLWEMNSSWSAQVEECIIPINDCIYPCIVEMKRIP 1069 (1329)
Q Consensus 992 VKIv~V~~G~vsll~kL~~h~sV~cIlVc-DpnhLVSaSdDG-kL~IWDM~SgWsm~tee~Vi~~n~~v~p~I~elKrFp 1069 (1329)
.=|-.+..|| ++ .+..-..|+-.-+. ||.-+|-+-.|| +|-|+|..++-.-+.+. -...|..| .+.
T Consensus 343 aFi~~~~~~~--~i-qv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~--------~lg~I~av-~vs 410 (668)
T COG4946 343 AFIMRPWDGY--SI-QVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEK--------DLGNIEAV-KVS 410 (668)
T ss_pred EEEECCCCCe--eE-EcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeC--------CccceEEE-EEc
Confidence 3455566677 22 22223779988888 999999999999 99999999988777666 23457778 888
Q ss_pred CCCCeeEecCCCccEEEEEccccce----------eeeeccCccceeE--eccccccccccCcceEECcchhhh
Q 000725 1070 KCAPLVVGHNGFGEFGIWDISKRVL----------VSRFSAARASIYQ--FFPINLFSWQRNGSVSMDASLELT 1131 (1329)
Q Consensus 1070 kss~lIVTgSGDgtf~LWDIskg~l----------lqsF~ahs~sV~s--fsP~~s~S~d~~v~tfd~~s~d~~ 1131 (1329)
+++..|+-++...++-+-||+.|+. +..|.=|-++-|= =+|. +-++..|++|+..++.--
T Consensus 411 ~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~--gy~tq~Iklydm~~~Kiy 482 (668)
T COG4946 411 PDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPE--GYYTQSIKLYDMDGGKIY 482 (668)
T ss_pred CCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCc--ceeeeeEEEEecCCCeEE
Confidence 8899999999999999999999985 5566666665544 4554 457788999998775443
No 368
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=53.64 E-value=60 Score=36.71 Aligned_cols=66 Identities=11% Similarity=0.115 Sum_probs=45.7
Q ss_pred eEEEEeccCcceEEEeeeeecCCCC-cccceeEEE---ecCCC--CCeeEecCCCccEEEEEccccceeeeecc
Q 000725 1033 KLHLWEMNSSWSAQVEECIIPINDC-IYPCIVEMK---RIPKC--APLVVGHNGFGEFGIWDISKRVLVSRFSA 1100 (1329)
Q Consensus 1033 kL~IWDM~SgWsm~tee~Vi~~n~~-v~p~I~elK---rFpks--s~lIVTgSGDgtf~LWDIskg~llqsF~a 1100 (1329)
||.+||+.|.-++++..| |+.-. -.+....+. +-..| +..-|+=++.+-+-+.|+.+++.-...+.
T Consensus 35 KLv~~Dl~t~~li~~~~~--p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~ 106 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPF--PPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHN 106 (287)
T ss_dssp EEEEEETTTTCEEEEEE----CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETC
T ss_pred EEEEEECCCCcEEEEEEC--ChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecC
Confidence 899999999998888773 22222 233444441 22224 56778888888999999999998777665
No 369
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=53.38 E-value=51 Score=38.98 Aligned_cols=61 Identities=18% Similarity=0.256 Sum_probs=42.3
Q ss_pred CCCCc--EEEEEecCcceeeeEEEecccceeEEEEe--cCCeEEEe-cCCCeEEEEeccCcceEEEee
Q 000725 987 LDENA--VKIVKVKPGYVSVVAKLKTDDCVQCILVC--EPKHLIAV-GESGKLHLWEMNSSWSAQVEE 1049 (1329)
Q Consensus 987 seDNt--VKIv~V~~G~vsll~kL~~h~sV~cIlVc--DpnhLVSa-SdDGkL~IWDM~SgWsm~tee 1049 (1329)
.+|.. |=.+|++++. .+.++..-..+.+|.|+ |.-+|++. ..+|.|.|||+.||-.+++.+
T Consensus 264 HKdpgteVWv~D~~t~k--rv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~ 329 (342)
T PF06433_consen 264 HKDPGTEVWVYDLKTHK--RVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIE 329 (342)
T ss_dssp TTS-EEEEEEEETTTTE--EEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE-
T ss_pred ccCCceEEEEEECCCCe--EEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehh
Confidence 34444 4455678877 88888865567799999 55577665 568999999999998877776
No 370
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=53.20 E-value=2.1e+02 Score=35.80 Aligned_cols=101 Identities=10% Similarity=0.131 Sum_probs=71.1
Q ss_pred cCCCC-cEEEEEecCcceeeeEEEecccceeEEEEe-cCCeEEEecCCCeEEEEeccCcceEEEeeeeecCCCCccccee
Q 000725 986 RLDEN-AVKIVKVKPGYVSVVAKLKTDDCVQCILVC-EPKHLIAVGESGKLHLWEMNSSWSAQVEECIIPINDCIYPCIV 1063 (1329)
Q Consensus 986 ~seDN-tVKIv~V~~G~vsll~kL~~h~sV~cIlVc-DpnhLVSaSdDGkL~IWDM~SgWsm~tee~Vi~~n~~v~p~I~ 1063 (1329)
+-.|+ .|-|++..+|. +...-...+.|-.+.+. |..++|.+-+-..|-+-|+.+|-+-.... .-+..|.
T Consensus 377 gt~dgD~l~iyd~~~~e--~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idk-------S~~~lIt 447 (668)
T COG4946 377 GTNDGDKLGIYDKDGGE--VKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDK-------SEYGLIT 447 (668)
T ss_pred eccCCceEEEEecCCce--EEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecc-------cccceeE
Confidence 33444 67799988876 33333444999999999 98999999988888888899887765544 4455566
Q ss_pred EEEecCCCCCeeEe----cCCCccEEEEEccccceee
Q 000725 1064 EMKRIPKCAPLVVG----HNGFGEFGIWDISKRVLVS 1096 (1329)
Q Consensus 1064 elKrFpkss~lIVT----gSGDgtf~LWDIskg~llq 1096 (1329)
+. ...+++..|+= |=.-..|+|+|+..|+...
T Consensus 448 df-~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~ 483 (668)
T COG4946 448 DF-DWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYD 483 (668)
T ss_pred EE-EEcCCceeEEEecCcceeeeeEEEEecCCCeEEE
Confidence 65 44444555443 3345679999999987744
No 371
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=51.08 E-value=79 Score=37.96 Aligned_cols=81 Identities=12% Similarity=0.194 Sum_probs=46.7
Q ss_pred cCCeEEEecCCCeEEEEeccC------cceEEEeee------ee---cCC---CCcccceeEEEecCC----CCCeeEec
Q 000725 1021 EPKHLIAVGESGKLHLWEMNS------SWSAQVEEC------II---PIN---DCIYPCIVEMKRIPK----CAPLVVGH 1078 (1329)
Q Consensus 1021 DpnhLVSaSdDGkL~IWDM~S------gWsm~tee~------Vi---~~n---~~v~p~I~elKrFpk----ss~lIVTg 1078 (1329)
+++.+|-+-.||.|..-+..+ .|......- +- +.. ......+.....+.. ...+|++=
T Consensus 157 ~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl 236 (547)
T PF11715_consen 157 SEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTL 236 (547)
T ss_dssp SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEE
T ss_pred CCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEE
Confidence 677777777888888777665 555544440 00 000 111111211112222 57889999
Q ss_pred CCCccEEEEEccccceeeeeccC
Q 000725 1079 NGFGEFGIWDISKRVLVSRFSAA 1101 (1329)
Q Consensus 1079 SGDgtf~LWDIskg~llqsF~ah 1101 (1329)
+-|+++||||+.++++++++.-.
T Consensus 237 ~~D~~LRiW~l~t~~~~~~~~~~ 259 (547)
T PF11715_consen 237 SRDHTLRIWSLETGQCLATIDLL 259 (547)
T ss_dssp ETTSEEEEEETTTTCEEEEEETT
T ss_pred eCCCeEEEEECCCCeEEEEeccc
Confidence 99999999999999999988765
No 372
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=49.23 E-value=37 Score=43.53 Aligned_cols=85 Identities=9% Similarity=0.102 Sum_probs=66.6
Q ss_pred ecccceeEEEEe-cCCeEEEecCCCeEEEEeccCcceEEEee-eee-------cCCCCcccceeEEEecCCCCCeeEecC
Q 000725 1009 KTDDCVQCILVC-EPKHLIAVGESGKLHLWEMNSSWSAQVEE-CII-------PINDCIYPCIVEMKRIPKCAPLVVGHN 1079 (1329)
Q Consensus 1009 ~~h~sV~cIlVc-DpnhLVSaSdDGkL~IWDM~SgWsm~tee-~Vi-------~~n~~v~p~I~elKrFpkss~lIVTgS 1079 (1329)
-.|..++|+.|. +..+|+-+|.||.|+|-.+.|...-.... .-+ ..-.||..+++-+ ..+..-|.+-|.+
T Consensus 12 PnnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vv-TWNe~~QKLTtSD 90 (1189)
T KOG2041|consen 12 PNNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVV-TWNENNQKLTTSD 90 (1189)
T ss_pred CCCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEE-EeccccccccccC
Confidence 345778999999 99999999999999999855433211111 111 2334899999988 9999999999999
Q ss_pred CCccEEEEEccccce
Q 000725 1080 GFGEFGIWDISKRVL 1094 (1329)
Q Consensus 1080 GDgtf~LWDIskg~l 1094 (1329)
.+|-|-+|=+=+|+-
T Consensus 91 t~GlIiVWmlykgsW 105 (1189)
T KOG2041|consen 91 TSGLIIVWMLYKGSW 105 (1189)
T ss_pred CCceEEEEeeecccH
Confidence 999999999999876
No 373
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=49.17 E-value=21 Score=28.70 Aligned_cols=24 Identities=29% Similarity=0.504 Sum_probs=19.0
Q ss_pred eecCCCeEEeecCCCeEEEEEccc
Q 000725 1210 IGASSGLGIIGTNDGLVYAWELSS 1233 (1329)
Q Consensus 1210 fs~SG~~gfaGT~DGlVYmWDLst 1233 (1329)
..+.|++++.|+.||.||..|..|
T Consensus 17 ~~v~~g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 17 PAVAGGRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp -EECTSEEEEE-TTSEEEEEETT-
T ss_pred CEEECCEEEEEcCCCEEEEEeCCC
Confidence 366799999999999999999764
No 374
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=49.09 E-value=58 Score=39.33 Aligned_cols=121 Identities=9% Similarity=0.110 Sum_probs=62.2
Q ss_pred cccccceeeecCCCcEEEEecCccCccccCCCccccccccccccCCCCcEEEEEecCcceeeeEEEecccceeEEEEecC
Q 000725 943 IALERSCALFTPDGQYLVLLDSMKTPYCREGRSDCLCSTCTSHRLDENAVKIVKVKPGYVSVVAKLKTDDCVQCILVCEP 1022 (1329)
Q Consensus 943 ~~~ersglqFTPDGQ~LvLlgsik~p~CR~~~~dC~Cs~C~~s~seDNtVKIv~V~~G~vsll~kL~~h~sV~cIlVcDp 1022 (1329)
..+--..|+++|.|++++ . +.|+.--|+.... ... ++.+.-..++|...
T Consensus 31 ~~~~p~~ls~npngr~v~------------------------V-~g~geY~iyt~~~----~r~--k~~G~g~~~vw~~~ 79 (443)
T PF04053_consen 31 CEIYPQSLSHNPNGRFVL------------------------V-CGDGEYEIYTALA----WRN--KAFGSGLSFVWSSR 79 (443)
T ss_dssp -SS--SEEEE-TTSSEEE------------------------E-EETTEEEEEETTT----TEE--EEEEE-SEEEE-TS
T ss_pred CCcCCeeEEECCCCCEEE------------------------E-EcCCEEEEEEccC----Ccc--cccCceeEEEEecC
Confidence 344467899999999999 3 3456666776222 222 22344456777766
Q ss_pred CeEEEecCCCeEEEEe-ccCcc--eEEEeeeeecCCCCcccceeEEEecCCCCCeeEecCCCccEEEEEccccceeeeec
Q 000725 1023 KHLIAVGESGKLHLWE-MNSSW--SAQVEECIIPINDCIYPCIVEMKRIPKCAPLVVGHNGFGEFGIWDISKRVLVSRFS 1099 (1329)
Q Consensus 1023 nhLVSaSdDGkL~IWD-M~SgW--sm~tee~Vi~~n~~v~p~I~elKrFpkss~lIVTgSGDgtf~LWDIskg~llqsF~ 1099 (1329)
+..+.-..+++|.|.. +...- .++.. ....+.|. +.+++ -.+++.+++||+++++.+.++.
T Consensus 80 n~yAv~~~~~~I~I~kn~~~~~~k~i~~~-------------~~~~~If~--G~LL~-~~~~~~i~~yDw~~~~~i~~i~ 143 (443)
T PF04053_consen 80 NRYAVLESSSTIKIYKNFKNEVVKSIKLP-------------FSVEKIFG--GNLLG-VKSSDFICFYDWETGKLIRRID 143 (443)
T ss_dssp SEEEEE-TTS-EEEEETTEE-TT-----S-------------S-EEEEE---SSSEE-EEETTEEEEE-TTT--EEEEES
T ss_pred ccEEEEECCCeEEEEEcCccccceEEcCC-------------cccceEEc--CcEEE-EECCCCEEEEEhhHcceeeEEe
Confidence 6666666689999853 32211 11111 11123565 55444 4455589999999999999999
Q ss_pred cCccceeE--ecccc
Q 000725 1100 AARASIYQ--FFPIN 1112 (1329)
Q Consensus 1100 ahs~sV~s--fsP~~ 1112 (1329)
... |-. .+|++
T Consensus 144 v~~--vk~V~Ws~~g 156 (443)
T PF04053_consen 144 VSA--VKYVIWSDDG 156 (443)
T ss_dssp S-E---EEEEE-TTS
T ss_pred cCC--CcEEEEECCC
Confidence 664 333 55554
No 375
>PRK10115 protease 2; Provisional
Probab=47.04 E-value=3.2e+02 Score=34.77 Aligned_cols=77 Identities=9% Similarity=0.111 Sum_probs=52.2
Q ss_pred ccccceeeecCCCcEEEEecCccCccccCCCccccccccccccCCCCcEEEEEecCcceeeeEE-EecccceeEEEEe-c
Q 000725 944 ALERSCALFTPDGQYLVLLDSMKTPYCREGRSDCLCSTCTSHRLDENAVKIVKVKPGYVSVVAK-LKTDDCVQCILVC-E 1021 (1329)
Q Consensus 944 ~~ersglqFTPDGQ~LvLlgsik~p~CR~~~~dC~Cs~C~~s~seDNtVKIv~V~~G~vsll~k-L~~h~sV~cIlVc-D 1021 (1329)
.+...++.++|||++|++.-+ ..+++.-+|+|.++.+|. .+.+ +.+.. ..+.|. |
T Consensus 126 ~~~l~~~~~Spdg~~la~~~d-------------------~~G~E~~~l~v~d~~tg~--~l~~~i~~~~--~~~~w~~D 182 (686)
T PRK10115 126 FYTLGGMAITPDNTIMALAED-------------------FLSRRQYGIRFRNLETGN--WYPELLDNVE--PSFVWAND 182 (686)
T ss_pred cEEEeEEEECCCCCEEEEEec-------------------CCCcEEEEEEEEECCCCC--CCCccccCcc--eEEEEeeC
Confidence 466678999999999995521 268888899999999996 3322 22222 347788 7
Q ss_pred CCeEEEecCC------CeEEEEeccCcc
Q 000725 1022 PKHLIAVGES------GKLHLWEMNSSW 1043 (1329)
Q Consensus 1022 pnhLVSaSdD------GkL~IWDM~SgW 1043 (1329)
++.|+=+..+ .+|..|++.|+-
T Consensus 183 ~~~~~y~~~~~~~~~~~~v~~h~lgt~~ 210 (686)
T PRK10115 183 SWTFYYVRKHPVTLLPYQVWRHTIGTPA 210 (686)
T ss_pred CCEEEEEEecCCCCCCCEEEEEECCCCh
Confidence 7766544332 367777777763
No 376
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=44.59 E-value=1.3e+02 Score=33.90 Aligned_cols=114 Identities=18% Similarity=0.189 Sum_probs=71.2
Q ss_pred ecCCCCCCCceeeecCCCeEEeecCCCeEEEEEcc--ccceeeeeecccCceEEEEEecCCCCceEEEecCCCCC---Cc
Q 000725 1198 ILGSPLDPRASAIGASSGLGIIGTNDGLVYAWELS--SGNKLGILHHFKGGTVSCIATDDSGLQALAVAGDGPDG---GR 1272 (1329)
Q Consensus 1198 I~Gs~ldpra~afs~SG~~gfaGT~DGlVYmWDLs--tG~kL~tL~~Heg~rVSCVA~dps~p~~~AsA~d~~d~---~~ 1272 (1329)
|+-....|.+++-+.. ..+|.++....|-+|||. .++.+.++..= | +|..++++..+.-.+++=...... .+
T Consensus 13 v~~~~~EP~~~c~~g~-d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~-~V~~l~y~~~GDYlvTlE~k~~~~~~~fv 89 (215)
T PF14761_consen 13 VVPCEQEPTAVCCGGP-DALFVAASGCKVEVYDLEQEECPLLCTFSTV-G-RVLQLVYSEAGDYLVTLEEKNKRSPVDFV 89 (215)
T ss_pred eeccccCcceeeccCC-ceEEEEcCCCEEEEEEcccCCCceeEEEcch-h-heeEEEeccccceEEEEEeecCCccceEE
Confidence 4445567877776632 566666999999999988 66666666655 5 799999998887755555443334 56
Q ss_pred cc---cCCCCCCCCcEEEeeeCCCcceeecCCCCcccceEEEeeeccccc
Q 000725 1273 RQ---RDPRHGQNDHVRIWKMDPNLGCVRNSNGDSKFKQFQISIKETKLP 1319 (1329)
Q Consensus 1273 r~---~~~~~s~D~~VRiW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1319 (1329)
|+ |......+.-||+=-. .. =+.+++..+- .-|++|-|-.|.
T Consensus 90 R~Y~NWr~~~~~~~~v~vRia-G~--~v~~~~~~~~--~~qleiiElPl~ 134 (215)
T PF14761_consen 90 RAYFNWRSQKEENSPVRVRIA-GH--RVTPSFNESS--KDQLEIIELPLS 134 (215)
T ss_pred EEEEEhhhhcccCCcEEEEEc-cc--ccccCCCCcc--ccceEEEEecCC
Confidence 66 5555555666666222 11 3444444443 225666666554
No 377
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.44 E-value=2.8e+02 Score=36.38 Aligned_cols=188 Identities=13% Similarity=0.082 Sum_probs=100.7
Q ss_pred ccCCCCcEEEEEecCcceeeeEEEecccceeEEEEecCCeEEEecCCCeEEEEeccCcceEEEeeeeecCCCCcccceeE
Q 000725 985 HRLDENAVKIVKVKPGYVSVVAKLKTDDCVQCILVCEPKHLIAVGESGKLHLWEMNSSWSAQVEECIIPINDCIYPCIVE 1064 (1329)
Q Consensus 985 s~seDNtVKIv~V~~G~vsll~kL~~h~sV~cIlVcDpnhLVSaSdDGkL~IWDM~SgWsm~tee~Vi~~n~~v~p~I~e 1064 (1329)
-|.-.++|.|++.+. . + .+-.-|-++ -.++-|++|+|+||++.|--|-|+--..++-|--| |..
T Consensus 54 ~GtH~g~v~~~~~~~-~--~-~~~~~~s~~----~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df~rp--------iks 117 (846)
T KOG2066|consen 54 LGTHRGAVYLTTCQG-N--P-KTNFDHSSS----ILEGEYVASCSDDGKVVIGSLFTDDEITQYDFKRP--------IKS 117 (846)
T ss_pred eccccceEEEEecCC-c--c-ccccccccc----ccCCceEEEecCCCcEEEeeccCCccceeEecCCc--------cee
Confidence 677778888888764 2 2 344444222 44899999999999999998888655554442111 111
Q ss_pred EEecCC-----CCCeeEecCCCccEEEEEccccce--eeeeccCccceeEeccccccccccCcceEECcchhhh------
Q 000725 1065 MKRIPK-----CAPLVVGHNGFGEFGIWDISKRVL--VSRFSAARASIYQFFPINLFSWQRNGSVSMDASLELT------ 1131 (1329)
Q Consensus 1065 lKrFpk-----ss~lIVTgSGDgtf~LWDIskg~l--lqsF~ahs~sV~sfsP~~s~S~d~~v~tfd~~s~d~~------ 1131 (1329)
+ .+.+ ++.+.|+|+-.| .-|.. ++-+ -.+...|.. =.|+.+++|.|+..-|....|-+.
T Consensus 118 i-al~Pd~~~~~sk~fv~GG~ag-lvL~e--r~wlgnk~~v~l~~~----eG~I~~i~W~g~lIAWand~Gv~vyd~~~~ 189 (846)
T KOG2066|consen 118 I-ALHPDFSRQQSKQFVSGGMAG-LVLSE--RNWLGNKDSVVLSEG----EGPIHSIKWRGNLIAWANDDGVKVYDTPTR 189 (846)
T ss_pred E-EeccchhhhhhhheeecCcce-EEEeh--hhhhcCccceeeecC----ccceEEEEecCcEEEEecCCCcEEEecccc
Confidence 2 3332 356777777777 55432 2111 111111111 345557778887777777666554
Q ss_pred -ccccccccccCCCceeecCCCCccceEE----EEeeccCccchhhccc------ccccCCCCc-ceeEEEeeeccceec
Q 000725 1132 -NTATTSLFSKHSEKSSFCPSVGEDSAIW----LLVSTISDSDAQHNCM------SRDCQKNPV-RFWRLALLVKNRVIL 1199 (1329)
Q Consensus 1132 -leatv~~fSgdvn~VsF~P~sGeD~Aiw----LLVST~Sdd~t~~Dlr------a~~~~gH~n-~~wRLALl~K~siI~ 1199 (1329)
+..-+.|=+..+....|.| - -.| .||=.+.++++..-++ +.++..|.- .+==++.+.-..+|-
T Consensus 190 ~~l~~i~~p~~~~R~e~fpp----h-l~W~~~~~LVIGW~d~v~i~~I~~~~s~~a~~~~~~~~~~V~~~s~f~~s~~is 264 (846)
T KOG2066|consen 190 QRLTNIPPPSQSVRPELFPP----H-LHWQDEDRLVIGWGDSVKICSIKKRSSSEARSFRLPSLKKVEIVSHFETSFYIS 264 (846)
T ss_pred ceeeccCCCCCCCCcccCCC----c-eEecCCCeEEEecCCeEEEEEEecccccccccccCCccceeeeEEEeeeeeeee
Confidence 1222232223444444555 1 223 2555566666665554 444444444 222234455555666
Q ss_pred CC
Q 000725 1200 GS 1201 (1329)
Q Consensus 1200 Gs 1201 (1329)
|-
T Consensus 265 Gl 266 (846)
T KOG2066|consen 265 GL 266 (846)
T ss_pred cc
Confidence 65
No 378
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=43.63 E-value=5.6e+02 Score=29.40 Aligned_cols=134 Identities=19% Similarity=0.262 Sum_probs=82.2
Q ss_pred ccccceeeeeeccCCeEEEEEE-eccccccceEEEEEEeeeCCCCCCCCceeecccccccccccccccccccccceeeec
Q 000725 875 FPLPILSVLLSTTGDKIYVCVS-CGFLVDKKRTLFIYTVDIQEPRVGNPSCVGHTSVMLPFLKDNFGREIALERSCALFT 953 (1329)
Q Consensus 875 HpmpVlsv~l~t~~~ei~IcVl-CG~L~~~~r~Lf~Yki~i~~~~~~~p~~vg~t~~llp~~~~~~~~~~~~ersglqFT 953 (1329)
.|+--+|=+.-...+-.++.|+ =|+ ...+-.+|.+++.++....+...+.+.+++.-|.= ..|.+ ..+.--||++.
T Consensus 17 ~~~GGlSgl~~~~~~~~~~avSD~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G-~~~~~-~~~D~Egi~~~ 93 (326)
T PF13449_consen 17 IPFGGLSGLDYDPDDGRFYAVSDRGP-NKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDG-QPFPK-NGLDPEGIAVP 93 (326)
T ss_pred CccCcEeeEEEeCCCCEEEEEECCCC-CCCCCcEEEEEeeccCCCccceEeccceeccCCCC-CcCCc-CCCChhHeEEe
Confidence 4555567666664333343332 233 33334589999999777888899999988887761 11211 22466689999
Q ss_pred CCCcEEEEecCccCccccCCCccccccccccccCCCCcEEEEEecCcceeeeEE----------------EecccceeEE
Q 000725 954 PDGQYLVLLDSMKTPYCREGRSDCLCSTCTSHRLDENAVKIVKVKPGYVSVVAK----------------LKTDDCVQCI 1017 (1329)
Q Consensus 954 PDGQ~LvLlgsik~p~CR~~~~dC~Cs~C~~s~seDNtVKIv~V~~G~vsll~k----------------L~~h~sV~cI 1017 (1329)
+||.++| .-|+. ........|.-++.. |.+ +.. +....++-.+
T Consensus 94 ~~g~~~i---------s~E~~---------~~~~~~p~I~~~~~~-G~~--~~~~~vP~~~~~~~~~~~~~~~N~G~E~l 152 (326)
T PF13449_consen 94 PDGSFWI---------SSEGG---------RTGGIPPRIRRFDLD-GRV--IRRFPVPAAFLPDANGTSGRRNNRGFEGL 152 (326)
T ss_pred cCCCEEE---------EeCCc---------cCCCCCCEEEEECCC-Ccc--cceEccccccccccCccccccCCCCeEEE
Confidence 9999998 11111 011123556666655 553 222 2344788999
Q ss_pred EEe-cCCeEEEecCCC
Q 000725 1018 LVC-EPKHLIAVGESG 1032 (1329)
Q Consensus 1018 lVc-DpnhLVSaSdDG 1032 (1329)
++. |.+.|+++-|..
T Consensus 153 a~~~dG~~l~~~~E~~ 168 (326)
T PF13449_consen 153 AVSPDGRTLFAAMESP 168 (326)
T ss_pred EECCCCCEEEEEECcc
Confidence 999 888788876654
No 379
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.91 E-value=29 Score=44.87 Aligned_cols=71 Identities=23% Similarity=0.209 Sum_probs=49.5
Q ss_pred CceeeecCCCeEEeecCCCeEEEEEcccccee-eeeecccCceEEEEEecCCCCceEEEecCCC-CC-CccccCCC
Q 000725 1206 RASAIGASSGLGIIGTNDGLVYAWELSSGNKL-GILHHFKGGTVSCIATDDSGLQALAVAGDGP-DG-GRRQRDPR 1278 (1329)
Q Consensus 1206 ra~afs~SG~~gfaGT~DGlVYmWDLstG~kL-~tL~~Heg~rVSCVA~dps~p~~~AsA~d~~-d~-~~r~~~~~ 1278 (1329)
-+.+++.+|+.++.||.||.|.. |..+-++ ..+++|+-.-|+-+-.....+--.+++-|.. +. .+|||++-
T Consensus 27 ~isc~~s~~~~vvigt~~G~V~~--Ln~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~le 100 (933)
T KOG2114|consen 27 AISCCSSSTGSVVIGTADGRVVI--LNSSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLE 100 (933)
T ss_pred ceeEEcCCCceEEEeeccccEEE--ecccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEeccc
Confidence 78999999999999999998754 5666777 8899998822777777744455344443322 23 45666653
No 380
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=42.16 E-value=1.9e+02 Score=34.25 Aligned_cols=112 Identities=13% Similarity=0.187 Sum_probs=70.6
Q ss_pred cceeeecCCCcEEEEecCccCccccCCCccccccccccccCCCCcEEEEEecCcceeeeEEEecc--cceeEEEEe-cCC
Q 000725 947 RSCALFTPDGQYLVLLDSMKTPYCREGRSDCLCSTCTSHRLDENAVKIVKVKPGYVSVVAKLKTD--DCVQCILVC-EPK 1023 (1329)
Q Consensus 947 rsglqFTPDGQ~LvLlgsik~p~CR~~~~dC~Cs~C~~s~seDNtVKIv~V~~G~vsll~kL~~h--~sV~cIlVc-Dpn 1023 (1329)
-..+..+|+|++|+|+ .+++.+.|++..- .+.+.++... .....+.|| +..
T Consensus 219 i~~iavSpng~~iAl~------------------------t~~g~l~v~ssDf--~~~~~e~~~~~~~~p~~~~WCG~da 272 (410)
T PF04841_consen 219 IIKIAVSPNGKFIALF------------------------TDSGNLWVVSSDF--SEKLCEFDTDSKSPPKQMAWCGNDA 272 (410)
T ss_pred eEEEEECCCCCEEEEE------------------------ECCCCEEEEECcc--cceeEEeecCcCCCCcEEEEECCCc
Confidence 3568899999999954 3456677766544 3466677666 677888899 433
Q ss_pred eEEEecCCCeEEEEeccCcceEEEeeeeecCCCCcccceeEEEecCCCCCeeEecCCCccEEEEEccccceeeeeccCcc
Q 000725 1024 HLIAVGESGKLHLWEMNSSWSAQVEECIIPINDCIYPCIVEMKRIPKCAPLVVGHNGFGEFGIWDISKRVLVSRFSAARA 1103 (1329)
Q Consensus 1024 hLVSaSdDGkL~IWDM~SgWsm~tee~Vi~~n~~v~p~I~elKrFpkss~lIVTgSGDgtf~LWDIskg~llqsF~ahs~ 1103 (1329)
.+++- ...|.+.-....|. .|+-....++-.-.|| +||--=++..+++.......
T Consensus 273 v~l~~--~~~l~lvg~~~~~~----------------------~~~~~~~~~l~~E~DG-~riit~~~~~~l~~Vp~~~~ 327 (410)
T PF04841_consen 273 VVLSW--EDELLLVGPDGDSI----------------------SFWYDGPVILVSEIDG-VRIITSTSHEFLQRVPDSTE 327 (410)
T ss_pred EEEEe--CCEEEEECCCCCce----------------------EEeccCceEEeccCCc-eEEEeCCceEEEEECCHHHH
Confidence 33333 33455555444332 2222333555566676 78877778888999887777
Q ss_pred ceeEec
Q 000725 1104 SIYQFF 1109 (1329)
Q Consensus 1104 sV~sfs 1109 (1329)
.||.+.
T Consensus 328 ~if~ig 333 (410)
T PF04841_consen 328 NIFRIG 333 (410)
T ss_pred HHhccc
Confidence 766633
No 381
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=35.49 E-value=43 Score=37.93 Aligned_cols=70 Identities=11% Similarity=0.042 Sum_probs=44.0
Q ss_pred CCCcccccccccc-----ccCCCCcEEEEEec-CcceeeeEEEecccceeEEEEe--cCCeEEEecCCCeEEEEeccCc
Q 000725 972 EGRSDCLCSTCTS-----HRLDENAVKIVKVK-PGYVSVVAKLKTDDCVQCILVC--EPKHLIAVGESGKLHLWEMNSS 1042 (1329)
Q Consensus 972 ~~~~dC~Cs~C~~-----s~seDNtVKIv~V~-~G~vsll~kL~~h~sV~cIlVc--DpnhLVSaSdDGkL~IWDM~Sg 1042 (1329)
|..++|.-+.|+- -+..|.+|..|..+ -|+.+-+..+ +-..+.|.... +.+....+++||+++.|-....
T Consensus 57 e~~~~e~~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s-~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~ 134 (238)
T KOG2444|consen 57 ERFIDEGQRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCS-GEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPN 134 (238)
T ss_pred hhhhhcceeecccCceEEeecccceEEEecCCccchHHHhhhc-ccccceeccccccccceeEEeccCCceeeeccccC
Confidence 3445555444442 36789999999987 2331111111 11455665555 7778888999999999986653
No 382
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=34.36 E-value=36 Score=26.93 Aligned_cols=18 Identities=22% Similarity=0.707 Sum_probs=13.8
Q ss_pred ccceeeecCCCcEEEEec
Q 000725 946 ERSCALFTPDGQYLVLLD 963 (1329)
Q Consensus 946 ersglqFTPDGQ~LvLlg 963 (1329)
......|+|||++|++..
T Consensus 10 ~~~~p~~SpDGk~i~f~s 27 (39)
T PF07676_consen 10 DDGSPAWSPDGKYIYFTS 27 (39)
T ss_dssp SEEEEEE-TTSSEEEEEE
T ss_pred cccCEEEecCCCEEEEEe
Confidence 567789999999999544
No 383
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.13 E-value=1.3e+02 Score=37.82 Aligned_cols=76 Identities=16% Similarity=0.186 Sum_probs=50.8
Q ss_pred ccccCCCCcEEEEEec--Ccc---eeeeEEEecccceeEEEEecCCeEEEecCCCeEEEEeccCcceEEEeeeeecCCCC
Q 000725 983 TSHRLDENAVKIVKVK--PGY---VSVVAKLKTDDCVQCILVCEPKHLIAVGESGKLHLWEMNSSWSAQVEECIIPINDC 1057 (1329)
Q Consensus 983 ~~s~seDNtVKIv~V~--~G~---vsll~kL~~h~sV~cIlVcDpnhLVSaSdDGkL~IWDM~SgWsm~tee~Vi~~n~~ 1057 (1329)
++.|-.+|.|==||+- .-. +.--+-+.+-..-+|++-++.-|||.+|.+|.|+++|= .+-..+|+. .+
T Consensus 397 TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdr-i~~~AKTAl------Pg 469 (644)
T KOG2395|consen 397 TLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDR-IGRRAKTAL------PG 469 (644)
T ss_pred cEEeecCCceEEecccccCcceeeeeeccccccccccceeeecCCceEEEeecCCcEEeehh-hhhhhhhcc------cc
Confidence 3456777777777743 211 11112233337889999999999999999999999996 666666665 34
Q ss_pred cccceeEE
Q 000725 1058 IYPCIVEM 1065 (1329)
Q Consensus 1058 v~p~I~el 1065 (1329)
.+..|--+
T Consensus 470 LG~~I~hV 477 (644)
T KOG2395|consen 470 LGDAIKHV 477 (644)
T ss_pred cCCceeeE
Confidence 44555544
No 384
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=31.79 E-value=8.1e+02 Score=27.84 Aligned_cols=221 Identities=17% Similarity=0.154 Sum_probs=100.1
Q ss_pred cccceeeecCCCcEEEEecCccCccccCCCccccccccccccCCCCcEEEEEecCcceeeeEEEecccceeEEEEe-cCC
Q 000725 945 LERSCALFTPDGQYLVLLDSMKTPYCREGRSDCLCSTCTSHRLDENAVKIVKVKPGYVSVVAKLKTDDCVQCILVC-EPK 1023 (1329)
Q Consensus 945 ~ersglqFTPDGQ~LvLlgsik~p~CR~~~~dC~Cs~C~~s~seDNtVKIv~V~~G~vsll~kL~~h~sV~cIlVc-Dpn 1023 (1329)
-|-|||.|.||...|. ...-+...|-..+. .|.+=-...|.+.+..-.|.+. +..
T Consensus 22 ~e~SGLTy~pd~~tLf-----------------------aV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~ 77 (248)
T PF06977_consen 22 DELSGLTYNPDTGTLF-----------------------AVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGR 77 (248)
T ss_dssp S-EEEEEEETTTTEEE-----------------------EEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTE
T ss_pred CCccccEEcCCCCeEE-----------------------EEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCE
Confidence 4689999999987776 14455677766675 4774333456777889999999 566
Q ss_pred eEEEecCCCeEEEEeccCcc-eEEEeeeeecCCCCcccceeEEEecCCCCCeeEecCCCccEEEEEccccceeeeeccCc
Q 000725 1024 HLIAVGESGKLHLWEMNSSW-SAQVEECIIPINDCIYPCIVEMKRIPKCAPLVVGHNGFGEFGIWDISKRVLVSRFSAAR 1102 (1329)
Q Consensus 1024 hLVSaSdDGkL~IWDM~SgW-sm~tee~Vi~~n~~v~p~I~elKrFpkss~lIVTgSGDgtf~LWDIskg~llqsF~ahs 1102 (1329)
++++...+++|.+-+..+.- .+....+- -+.+ .++. .+..|.+.+ -||-..+.++-.=+.--
T Consensus 78 ~vl~~Er~~~L~~~~~~~~~~~~~~~~~~----------~~~l-~~~~-----~~N~G~EGl-a~D~~~~~L~v~kE~~P 140 (248)
T PF06977_consen 78 YVLSEERDQRLYIFTIDDDTTSLDRADVQ----------KISL-GFPN-----KGNKGFEGL-AYDPKTNRLFVAKERKP 140 (248)
T ss_dssp EEEEETTTTEEEEEEE----TT--EEEEE----------EEE----S--------SS--EEE-EEETTTTEEEEEEESSS
T ss_pred EEEEEcCCCcEEEEEEeccccccchhhce----------EEec-cccc-----CCCcceEEE-EEcCCCCEEEEEeCCCC
Confidence 66666669999999984421 22222100 0111 1111 111223333 37776666643322211
Q ss_pred cceeEeccccccccccCcceEECcchhhhccccccccccCCCceeecCCCCccceEEEEeeccCccchhhcccccccCCC
Q 000725 1103 ASIYQFFPINLFSWQRNGSVSMDASLELTNTATTSLFSKHSEKSSFCPSVGEDSAIWLLVSTISDSDAQHNCMSRDCQKN 1182 (1329)
Q Consensus 1103 ~sV~sfsP~~s~S~d~~v~tfd~~s~d~~leatv~~fSgdvn~VsF~P~sGeD~AiwLLVST~Sdd~t~~Dlra~~~~gH 1182 (1329)
..++++.-.. ....+.+........ ......-+|+ +.|+| ..+-+++.|.-+...-.+|. +|+
T Consensus 141 ~~l~~~~~~~---~~~~~~~~~~~~~~~-~~~~~~d~S~----l~~~p----~t~~lliLS~es~~l~~~d~-----~G~ 203 (248)
T PF06977_consen 141 KRLYEVNGFP---GGFDLFVSDDQDLDD-DKLFVRDLSG----LSYDP----RTGHLLILSDESRLLLELDR-----QGR 203 (248)
T ss_dssp EEEEEEESTT----SS--EEEE-HHHH--HT--SS---E----EEEET----TTTEEEEEETTTTEEEEE-T-----T--
T ss_pred hhhEEEcccc---Cccceeecccccccc-ccceeccccc----eEEcC----CCCeEEEEECCCCeEEEECC-----CCC
Confidence 2233321100 000111111111111 1111222455 99999 45677777766665544552 344
Q ss_pred CcceeEEEeeeccceecC---CCCCCCceeeecCCCeEEeecCCCeEEEE
Q 000725 1183 PVRFWRLALLVKNRVILG---SPLDPRASAIGASSGLGIIGTNDGLVYAW 1229 (1329)
Q Consensus 1183 ~n~~wRLALl~K~siI~G---s~ldpra~afs~SG~~gfaGT~DGlVYmW 1229 (1329)
+...+.|.- . ..| ..-=|--.||.+.|+ ++.-++-++.|..
T Consensus 204 ~~~~~~L~~---g--~~gl~~~~~QpEGIa~d~~G~-LYIvsEpNlfy~f 247 (248)
T PF06977_consen 204 VVSSLSLDR---G--FHGLSKDIPQPEGIAFDPDGN-LYIVSEPNLFYRF 247 (248)
T ss_dssp EEEEEE-ST---T--GGG-SS---SEEEEEE-TT---EEEEETTTEEEEE
T ss_pred EEEEEEeCC---c--ccCcccccCCccEEEECCCCC-EEEEcCCceEEEe
Confidence 555555431 0 000 011256678888774 4555578888875
No 385
>PRK00339 minC septum formation inhibitor; Reviewed
Probab=30.45 E-value=1.9e+02 Score=32.69 Aligned_cols=82 Identities=11% Similarity=0.161 Sum_probs=57.5
Q ss_pred eeec--cceecCCCCCCCceeeecCCCeEEeecCCCeEEEEEccccceeeeeecccCceEEEEEecCCCCceEEEecCCC
Q 000725 1191 LLVK--NRVILGSPLDPRASAIGASSGLGIIGTNDGLVYAWELSSGNKLGILHHFKGGTVSCIATDDSGLQALAVAGDGP 1268 (1329)
Q Consensus 1191 Ll~K--~siI~Gs~ldpra~afs~SG~~gfaGT~DGlVYmWDLstG~kL~tL~~Heg~rVSCVA~dps~p~~~AsA~d~~ 1268 (1329)
+|++ +=||+|. .-.|.-+++ ||.|++|=-+.|+-+...+|.+.-||-|.... +.=+.+|+
T Consensus 156 I~a~~gDLIVlG~---------Vn~GAEViA---dGnIhVyG~LRGrA~AGa~Gd~~ArIf~~~l~---aelvsIAg--- 217 (249)
T PRK00339 156 IYAQGGDLIVLAP---------VSPGAELLA---DGNIHVYGPMRGRALAGIKGDTKARIFCQQLE---AELVSIAG--- 217 (249)
T ss_pred EEecCCCEEEEcc---------CCCCCEEEe---CCCEEEEEEcccEEEecCCCCCccEEEeccCC---ccEEEEcc---
Confidence 4554 5677777 445666665 78999999999999999999999999999999 55467772
Q ss_pred CCCccccC---CCCCCCCcEEEeeeCC
Q 000725 1269 DGGRRQRD---PRHGQNDHVRIWKMDP 1292 (1329)
Q Consensus 1269 d~~~r~~~---~~~s~D~~VRiW~~~~ 1292 (1329)
..++-+ +.+-|..-|+||-.+.
T Consensus 218 --~y~~~e~~~~~~~~~k~v~i~L~~~ 242 (249)
T PRK00339 218 --QYKVSEDLRRDPLWGSAVQVSLSGD 242 (249)
T ss_pred --EEEeccCCCccccCCCcEEEEEcCC
Confidence 333322 2224566666665443
No 386
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=30.15 E-value=2.9e+02 Score=31.20 Aligned_cols=113 Identities=17% Similarity=0.206 Sum_probs=56.8
Q ss_pred cccceEEEEEEeeeCCCCCCCCceeecccccccccccccccccccccceeeecCCCcEEEEecCccCccccCCCcccccc
Q 000725 901 VDKKRTLFIYTVDIQEPRVGNPSCVGHTSVMLPFLKDNFGREIALERSCALFTPDGQYLVLLDSMKTPYCREGRSDCLCS 980 (1329)
Q Consensus 901 ~~~~r~Lf~Yki~i~~~~~~~p~~vg~t~~llp~~~~~~~~~~~~ersglqFTPDGQ~LvLlgsik~p~CR~~~~dC~Cs 980 (1329)
.++.++||++++.........+.+-- -++-++ ...|.| --||+|.|.++.|++
T Consensus 82 ~Er~~~L~~~~~~~~~~~~~~~~~~~-~~l~~~-~~~N~G------~EGla~D~~~~~L~v------------------- 134 (248)
T PF06977_consen 82 EERDQRLYIFTIDDDTTSLDRADVQK-ISLGFP-NKGNKG------FEGLAYDPKTNRLFV------------------- 134 (248)
T ss_dssp ETTTTEEEEEEE----TT--EEEEEE-EE---S----SS--------EEEEEETTTTEEEE-------------------
T ss_pred EcCCCcEEEEEEeccccccchhhceE-Eecccc-cCCCcc------eEEEEEcCCCCEEEE-------------------
Confidence 46788999999866544444333221 112222 223333 338999998887772
Q ss_pred ccccccCCCCcEEEEEecC---cceeeeEEEecc-------cceeEEEEe--cCCeEEEecCCCeEEEEeccCcceEE
Q 000725 981 TCTSHRLDENAVKIVKVKP---GYVSVVAKLKTD-------DCVQCILVC--EPKHLIAVGESGKLHLWEMNSSWSAQ 1046 (1329)
Q Consensus 981 ~C~~s~seDNtVKIv~V~~---G~vsll~kL~~h-------~sV~cIlVc--DpnhLVSaSdDGkL~IWDM~SgWsm~ 1046 (1329)
.-+.+-.+|+.++. +..-.+....++ ..++.|.+- .++.+|=+.++++|.++| ..|-...
T Consensus 135 -----~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~ 206 (248)
T PF06977_consen 135 -----AKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVS 206 (248)
T ss_dssp -----EEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEE
T ss_pred -----EeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEE
Confidence 23456678888876 332122222222 457777776 344778888899999999 4443333
No 387
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=29.53 E-value=1.6e+02 Score=36.52 Aligned_cols=112 Identities=12% Similarity=0.072 Sum_probs=86.1
Q ss_pred ccCCCCcEEEEEecCcceeeeEEEecc-cceeEEEEe-cCCeEEEecCCCeEEEEecc---------CcceEEEee--ee
Q 000725 985 HRLDENAVKIVKVKPGYVSVVAKLKTD-DCVQCILVC-EPKHLIAVGESGKLHLWEMN---------SSWSAQVEE--CI 1051 (1329)
Q Consensus 985 s~seDNtVKIv~V~~G~vsll~kL~~h-~sV~cIlVc-DpnhLVSaSdDGkL~IWDM~---------SgWsm~tee--~V 1051 (1329)
+-.++..+-||+-..+.-.+...=+=| ..|.++-.. -..-++|.-.+|-|-.|-.. =.|.++.+. |.
T Consensus 117 s~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~ 196 (558)
T KOG0882|consen 117 SLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYG 196 (558)
T ss_pred ecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhc
Confidence 556788889998777665666666667 889999888 55566666668999999966 368888877 33
Q ss_pred ecCCCCcccceeEEEecCCCCCeeEecCCCccEEEEEccccceeeeecc
Q 000725 1052 IPINDCIYPCIVEMKRIPKCAPLVVGHNGFGEFGIWDISKRVLVSRFSA 1100 (1329)
Q Consensus 1052 i~~n~~v~p~I~elKrFpkss~lIVTgSGDgtf~LWDIskg~llqsF~a 1100 (1329)
.+-++ ..|..+ .|.+.+-+|.+=+-|-++++++..+|.++|.|+.
T Consensus 197 f~K~K-t~pts~---Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE 241 (558)
T KOG0882|consen 197 FPKAK-TEPTSF---EFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDE 241 (558)
T ss_pred ccccc-cCccce---EEccccCcccccCcccEEEEEEeccchhhhhhhc
Confidence 35444 334444 4577899999999999999999999999999974
No 388
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.70 E-value=2.9e+02 Score=36.93 Aligned_cols=186 Identities=14% Similarity=0.059 Sum_probs=0.0
Q ss_pred cCCeEEEecCCCeEEEEeccCcceEEEee-----eeecCCC--C-cccceeEEEecCC----------------CCCeeE
Q 000725 1021 EPKHLIAVGESGKLHLWEMNSSWSAQVEE-----CIIPIND--C-IYPCIVEMKRIPK----------------CAPLVV 1076 (1329)
Q Consensus 1021 DpnhLVSaSdDGkL~IWDM~SgWsm~tee-----~Vi~~n~--~-v~p~I~elKrFpk----------------ss~lIV 1076 (1329)
|+.|+|+.-.||++-.||..++-. +-++ .++-+.+ + .-++..++-+-.+ ..-+++
T Consensus 245 ~~~~~v~~h~Dgs~~fWd~s~g~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~v~~ 323 (993)
T KOG1983|consen 245 DGSHFVSYHTDGSYAFWDVSSGKL-QIARNPVPLVSLVPYGPCKQINRILTELPRSGKPFWICQGGMPRGSYGDRHCVSV 323 (993)
T ss_pred CCceEEEEEecCCEEeeecCCCce-eecCccccccccCCCChhhhhcccccccccccCcEEEecCCCccceecccceeEe
Q ss_pred ecCCCccEEEEEccccceeeeeccCccceeEeccccccccccCcceEECcchhhh----ccccccccccCCCceeecCCC
Q 000725 1077 GHNGFGEFGIWDISKRVLVSRFSAARASIYQFFPINLFSWQRNGSVSMDASLELT----NTATTSLFSKHSEKSSFCPSV 1152 (1329)
Q Consensus 1077 TgSGDgtf~LWDIskg~llqsF~ahs~sV~sfsP~~s~S~d~~v~tfd~~s~d~~----leatv~~fSgdvn~VsF~P~s 1152 (1329)
.+++-.++..|+++-..+...+..-..+.+...|... +..+......+. +....+.+.+..+.-..+|+.
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~I~~~~ 397 (993)
T KOG1983|consen 324 EHDGTQVKLDFTSSVIGLVGVTSEDPMSNFDANPNLV------VLLEEELVPPDLQTLGIPSVSPPYLGSHHKSAITCLS 397 (993)
T ss_pred ecCCceeEEEEEecccceeeeecccccCccccCccce------eccccccChhhhhccCCCcccchhccccCcceeeccc
Q ss_pred CccceEEEEeeccCccchhhcccccccCCCCcceeEEEeeeccceecCCCCCCCceeeecCCCeEEeecCCCeEEEEE
Q 000725 1153 GEDSAIWLLVSTISDSDAQHNCMSRDCQKNPVRFWRLALLVKNRVILGSPLDPRASAIGASSGLGIIGTNDGLVYAWE 1230 (1329)
Q Consensus 1153 GeD~AiwLLVST~Sdd~t~~Dlra~~~~gH~n~~wRLALl~K~siI~Gs~ldpra~afs~SG~~gfaGT~DGlVYmWD 1230 (1329)
.+--..-++--+..-+..+ .+-.|- +..+..++-|. -.++.-+--.++-++..|+.++.||
T Consensus 398 ~~~~~~~~~~~~~~~~~~~-----------~~~~~~--~~~s~~~v~~~----~~~~~~~~~~~g~~~~~d~~~~~~~ 458 (993)
T KOG1983|consen 398 LDGEVPTMLYPSGLAAGNA-----------QSVPPV--SALSWPIVGGR----LLQSAPKLLEIGLTGHEDSTVSFLD 458 (993)
T ss_pred cCCCccccccccccccccc-----------cCCCch--hccccceeece----ecccCccceeecccccccceeeEEe
No 389
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=27.03 E-value=1.2e+03 Score=28.26 Aligned_cols=53 Identities=28% Similarity=0.327 Sum_probs=41.9
Q ss_pred CCCCcceeEEEeeeccceecCCCCCCCceeeecCCCeEEeecCCCeEEEEEccccceeeeeecccC
Q 000725 1180 QKNPVRFWRLALLVKNRVILGSPLDPRASAIGASSGLGIIGTNDGLVYAWELSSGNKLGILHHFKG 1245 (1329)
Q Consensus 1180 ~gH~n~~wRLALl~K~siI~Gs~ldpra~afs~SG~~gfaGT~DGlVYmWDLstG~kL~tL~~Heg 1245 (1329)
.+.=|.-|-||+ .| +.+=..||.+++.=--||.|.+.|-.+|+-++.|..-.|
T Consensus 240 ~g~LNaPWG~a~------------AP-a~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G 292 (336)
T TIGR03118 240 SGRLNAPWGLAI------------AP-ESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDN 292 (336)
T ss_pred CCcccCCceeee------------Ch-hhhCCCCCCeEEeecCCceeEEecCCCCceeeeecCCCC
Confidence 466778888874 22 223347899999988899999999999999999987666
No 390
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=25.73 E-value=3.4e+02 Score=32.85 Aligned_cols=133 Identities=14% Similarity=0.156 Sum_probs=81.0
Q ss_pred eecCCCcEEEEecCccCccccCCCccccccccccccCCCCcEEEEEecCcceeeeEEEecccceeEEEEe--cCCeEEEe
Q 000725 951 LFTPDGQYLVLLDSMKTPYCREGRSDCLCSTCTSHRLDENAVKIVKVKPGYVSVVAKLKTDDCVQCILVC--EPKHLIAV 1028 (1329)
Q Consensus 951 qFTPDGQ~LvLlgsik~p~CR~~~~dC~Cs~C~~s~seDNtVKIv~V~~G~vsll~kL~~h~sV~cIlVc--DpnhLVSa 1028 (1329)
.|.|||+-|+++ ++..-.| -.+-++++++|..+.+..+.++..+.. |+ ..+.+++.
T Consensus 199 ~ws~~~~~~~y~-~f~~~~~-------------------~~i~~~~l~~g~~~~i~~~~g~~~~P~--fspDG~~l~f~~ 256 (425)
T COG0823 199 AWSPDGKKLAYV-SFELGGC-------------------PRIYYLDLNTGKRPVILNFNGNNGAPA--FSPDGSKLAFSS 256 (425)
T ss_pred ccCcCCCceEEE-EEecCCC-------------------ceEEEEeccCCccceeeccCCccCCcc--CCCCCCEEEEEE
Confidence 579999999866 3322211 458999999999999999988866554 56 45556688
Q ss_pred cCCCeEEEEeccCcceEEEeeeeecCCCCcccceeEEEecCCCCCeeEecC---CCccEEEEEccccce-eeeeccCccc
Q 000725 1029 GESGKLHLWEMNSSWSAQVEECIIPINDCIYPCIVEMKRIPKCAPLVVGHN---GFGEFGIWDISKRVL-VSRFSAARAS 1104 (1329)
Q Consensus 1029 SdDGkL~IWDM~SgWsm~tee~Vi~~n~~v~p~I~elKrFpkss~lIVTgS---GDgtf~LWDIskg~l-lqsF~ahs~s 1104 (1329)
..||...||-|+-.-...+-- -.+..|-.-=-+.+++..|+=.| |--.+-+-|.+.++. ..++.+-+.+
T Consensus 257 ~rdg~~~iy~~dl~~~~~~~L-------t~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~ 329 (425)
T COG0823 257 SRDGSPDIYLMDLDGKNLPRL-------TNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNS 329 (425)
T ss_pred CCCCCccEEEEcCCCCcceec-------ccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCCc
Confidence 889999999877654442221 11111221114666677776443 333455556666654 4455554444
Q ss_pred eeEecccc
Q 000725 1105 IYQFFPIN 1112 (1329)
Q Consensus 1105 V~sfsP~~ 1112 (1329)
.-..+|++
T Consensus 330 ~p~~SpdG 337 (425)
T COG0823 330 NPVWSPDG 337 (425)
T ss_pred CccCCCCC
Confidence 22255555
No 391
>smart00561 MBT Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2. Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2. These proteins are involved in transcriptional regulation.
Probab=25.13 E-value=32 Score=33.58 Aligned_cols=28 Identities=25% Similarity=0.679 Sum_probs=21.8
Q ss_pred CCcccc--ccccCCCCCCcccCCceeEEeeec
Q 000725 32 GPWEKK--YWSSSRGKDRYPYPVGYHAVQAHN 61 (1329)
Q Consensus 32 g~wdrk--ywsSSr~~dRYIyPVGY~A~Rky~ 61 (1329)
+-|+.+ ||.. .....|+|+||++...|.
T Consensus 63 dg~~~~~D~W~~--~~S~~I~PvGwc~~~g~~ 92 (96)
T smart00561 63 DGWDDKYDFWCD--ADSPDIHPVGWCEKNGHP 92 (96)
T ss_pred ccCCCcCCEEEE--CCCCCcccCchHHhcCCc
Confidence 457776 8887 668899999999876653
No 392
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=24.81 E-value=6e+02 Score=33.25 Aligned_cols=94 Identities=15% Similarity=0.044 Sum_probs=59.9
Q ss_pred ccCCCCcEEEEEecCcc------------------eeeeEEEecccceeEEEEe--cCCeEEEecCCCeEEEEeccCcce
Q 000725 985 HRLDENAVKIVKVKPGY------------------VSVVAKLKTDDCVQCILVC--EPKHLIAVGESGKLHLWEMNSSWS 1044 (1329)
Q Consensus 985 s~seDNtVKIv~V~~G~------------------vsll~kL~~h~sV~cIlVc--DpnhLVSaSdDGkL~IWDM~SgWs 1044 (1329)
.|.+|+.|-+|-+++-. +.+.-.|.-..++=.+.|- +..+|+++|..+ |.
T Consensus 119 ~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs----------~~ 188 (717)
T PF08728_consen 119 LCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNS----------QE 188 (717)
T ss_pred EEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCC----------ce
Confidence 67899999999764322 1233444444677788887 777777777543 33
Q ss_pred EEEeeeeecCCC-------CcccceeEEEecCCCC---C---eeEecCCCccEEEEEc
Q 000725 1045 AQVEECIIPIND-------CIYPCIVEMKRIPKCA---P---LVVGHNGFGEFGIWDI 1089 (1329)
Q Consensus 1045 m~tee~Vi~~n~-------~v~p~I~elKrFpkss---~---lIVTgSGDgtf~LWDI 1089 (1329)
+..+.|-..+.+ -+.+.|=++ .|.++. . .|+..|-.|++.+|||
T Consensus 189 VTVFaf~l~~~r~~~~~s~~~~hNIP~V-SFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 189 VTVFAFALVDERFYHVPSHQHSHNIPNV-SFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEEEEeccccccccccccccccCCCee-EeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 333332221111 155666666 676665 2 8899999999999999
No 393
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=24.77 E-value=2.7e+02 Score=35.45 Aligned_cols=131 Identities=17% Similarity=0.174 Sum_probs=73.8
Q ss_pred CCeEEEecCCCeEEEEe------ccCcceE---EEee-------eeecCCCCcccceeEEEecCCCCCeeEecCCCccEE
Q 000725 1022 PKHLIAVGESGKLHLWE------MNSSWSA---QVEE-------CIIPINDCIYPCIVEMKRIPKCAPLVVGHNGFGEFG 1085 (1329)
Q Consensus 1022 pnhLVSaSdDGkL~IWD------M~SgWsm---~tee-------~Vi~~n~~v~p~I~elKrFpkss~lIVTgSGDgtf~ 1085 (1329)
++.++.+-+| .|+.|| ..-.|+. ..+. ..+|++. |.=.+..+ -.++.+++|+=.+-||-+-
T Consensus 52 trN~~~~~gD-~lf~Wd~~ds~Llv~~lR~~~~~~~~~a~~q~q~l~P~~~-V~feV~~v-l~s~~GS~VaL~G~~Gi~v 128 (741)
T KOG4460|consen 52 TRNVVFGLGD-ELFLWDGEDSSLLVVRLRGPSGGGEEPALSQYQRLLPINP-VLFEVYQV-LLSPTGSHVALIGIKGLMV 128 (741)
T ss_pred ccchhcccCC-EEEEEecCcceEEEEEeccCCCCcccccccccceeccCCc-ceEEEEEE-EecCCCceEEEecCCeeEE
Confidence 5677777777 999999 3334542 1222 2235544 22223333 7788899998888887665
Q ss_pred EEEcccc-ceeeeeccCccceeE-eccccccccccCcceEECcchhhh-ccccccccccCCCceeecCCCCccceEEEEe
Q 000725 1086 IWDISKR-VLVSRFSAARASIYQ-FFPINLFSWQRNGSVSMDASLELT-NTATTSLFSKHSEKSSFCPSVGEDSAIWLLV 1162 (1329)
Q Consensus 1086 LWDIskg-~llqsF~ahs~sV~s-fsP~~s~S~d~~v~tfd~~s~d~~-leatv~~fSgdvn~VsF~P~sGeD~AiwLLV 1162 (1329)
+. +-+| -.-+.|+.-...|.+ ..|+++ ++|-.+ -..+ ++ ++++|.+--|.- |++
T Consensus 129 Me-Lp~rwG~~s~~eDgk~~v~CRt~~i~~-------~~ftss-~~ltl~Q------------a~WHP~S~~D~h--L~i 185 (741)
T KOG4460|consen 129 ME-LPKRWGKNSEFEDGKSTVNCRTTPVAE-------RFFTSS-TSLTLKQ------------AAWHPSSILDPH--LVL 185 (741)
T ss_pred EE-chhhcCccceecCCCceEEEEeecccc-------eeeccC-Cceeeee------------ccccCCccCCce--EEE
Confidence 42 2211 123445544445555 555553 344333 2222 22 778886656644 444
Q ss_pred eccCccchhhcccccc
Q 000725 1163 STISDSDAQHNCMSRD 1178 (1329)
Q Consensus 1163 ST~Sdd~t~~Dlra~~ 1178 (1329)
=+.++..+.||+...+
T Consensus 186 L~sdnviRiy~lS~~t 201 (741)
T KOG4460|consen 186 LTSDNVIRIYSLSEPT 201 (741)
T ss_pred EecCcEEEEEecCCcc
Confidence 4778889999988544
No 394
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=24.30 E-value=3.1e+02 Score=33.19 Aligned_cols=56 Identities=25% Similarity=0.370 Sum_probs=40.1
Q ss_pred CeEEEEEccccceeeeeecccCceEEEEEecCCCCceEEEecCCCCCCccccCCCCCCCCcEEEeeeCCCcce
Q 000725 1224 GLVYAWELSSGNKLGILHHFKGGTVSCIATDDSGLQALAVAGDGPDGGRRQRDPRHGQNDHVRIWKMDPNLGC 1296 (1329)
Q Consensus 1224 GlVYmWDLstG~kL~tL~~Heg~rVSCVA~dps~p~~~AsA~d~~d~~~r~~~~~~s~D~~VRiW~~~~~~~~ 1296 (1329)
..||+||+.+|++-..+. +.+ ....-+.+|.+.. +|.+. ..|+...||.|+-..+=
T Consensus 218 ~~i~~~~l~~g~~~~i~~-~~g-~~~~P~fspDG~~-l~f~~--------------~rdg~~~iy~~dl~~~~ 273 (425)
T COG0823 218 PRIYYLDLNTGKRPVILN-FNG-NNGAPAFSPDGSK-LAFSS--------------SRDGSPDIYLMDLDGKN 273 (425)
T ss_pred ceEEEEeccCCccceeec-cCC-ccCCccCCCCCCE-EEEEE--------------CCCCCccEEEEcCCCCc
Confidence 579999999998766665 333 3447789999988 66663 56677777777765443
No 395
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=24.26 E-value=9.1e+02 Score=31.52 Aligned_cols=94 Identities=14% Similarity=0.156 Sum_probs=56.6
Q ss_pred ccccccccceeeecCCCcEEEEecCccCccccCCCcccccc-ccccccCC-CCcEEEEEecCcceeeeEEEecccceeEE
Q 000725 940 GREIALERSCALFTPDGQYLVLLDSMKTPYCREGRSDCLCS-TCTSHRLD-ENAVKIVKVKPGYVSVVAKLKTDDCVQCI 1017 (1329)
Q Consensus 940 ~~~~~~ersglqFTPDGQ~LvLlgsik~p~CR~~~~dC~Cs-~C~~s~se-DNtVKIv~V~~G~vsll~kL~~h~sV~cI 1017 (1329)
+....||-.-|.++|+|.+|+|.|.--.-...=++. .. .....++. .=..|.+.|...+ ..-.....|..|
T Consensus 80 ~~~~~f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r---~g~~~~~~~g~~~i~Crt~~v~~~~----~~~~~~~~i~qv 152 (717)
T PF10168_consen 80 SNPPLFEVHQISLNPTGSLLALVGPRGVVVLELPRR---WGKNGEFEDGKKEINCRTVPVDERF----FTSNSSLEIKQV 152 (717)
T ss_pred CCCCceeEEEEEECCCCCEEEEEcCCcEEEEEeccc---cCccccccCCCcceeEEEEEechhh----ccCCCCceEEEE
Confidence 345678999999999999999999833221111110 00 00001111 1234567776665 111222678888
Q ss_pred EEe----cCCeEEEecCCCeEEEEecc
Q 000725 1018 LVC----EPKHLIAVGESGKLHLWEMN 1040 (1329)
Q Consensus 1018 lVc----DpnhLVSaSdDGkL~IWDM~ 1040 (1329)
.|- ...|||-=..|++|+++|+.
T Consensus 153 ~WhP~s~~~~~l~vLtsdn~lR~y~~~ 179 (717)
T PF10168_consen 153 RWHPWSESDSHLVVLTSDNTLRLYDIS 179 (717)
T ss_pred EEcCCCCCCCeEEEEecCCEEEEEecC
Confidence 886 35788888889999999954
No 396
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=23.49 E-value=75 Score=36.12 Aligned_cols=86 Identities=15% Similarity=0.173 Sum_probs=50.6
Q ss_pred cCCCccEEEEEccccceeeeeccCcccee-Eecccc---ccccccCcceEECcchhhhcc---cccccc-----------
Q 000725 1078 HNGFGEFGIWDISKRVLVSRFSAARASIY-QFFPIN---LFSWQRNGSVSMDASLELTNT---ATTSLF----------- 1139 (1329)
Q Consensus 1078 gSGDgtf~LWDIskg~llqsF~ahs~sV~-sfsP~~---s~S~d~~v~tfd~~s~d~~le---atv~~f----------- 1139 (1329)
+++.+++-|+||++++..+-.......-. .++|++ .+-.+..+-+.+..+...++. +...-+
T Consensus 19 ~s~~~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP~g~~~~~v~~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEE 98 (353)
T PF00930_consen 19 HSFKGDYYIYDIETGEITPLTPPPPKLQDAKWSPDGKYIAFVRDNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEE 98 (353)
T ss_dssp SEEEEEEEEEETTTTEEEESS-EETTBSEEEE-SSSTEEEEEETTEEEEESSTTSEEEESES--TTTEEESB--HHHHHH
T ss_pred eccceeEEEEecCCCceEECcCCccccccceeecCCCeeEEEecCceEEEECCCCCeEEeccccceeEEcCccceecccc
Confidence 57789999999999998777776333322 399999 666676666666655544421 111111
Q ss_pred -ccCCCceeecCCCCccceEEEEeeccCcc
Q 000725 1140 -SKHSEKSSFCPSVGEDSAIWLLVSTISDS 1168 (1329)
Q Consensus 1140 -Sgdvn~VsF~P~sGeD~AiwLLVST~Sdd 1168 (1329)
-+....++++| | +.+|+.-..++.
T Consensus 99 v~~~~~~~~WSp----d-~~~la~~~~d~~ 123 (353)
T PF00930_consen 99 VFDRRSAVWWSP----D-SKYLAFLRFDER 123 (353)
T ss_dssp TSSSSBSEEE-T----T-SSEEEEEEEE-T
T ss_pred ccccccceEECC----C-CCEEEEEEECCc
Confidence 11345689999 6 667665555443
No 397
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=23.46 E-value=4.1e+02 Score=32.46 Aligned_cols=140 Identities=14% Similarity=0.058 Sum_probs=68.4
Q ss_pred cceeeecCCCcEEEEecCccCccccCCCccccccccccccCCCCcEEEEEecCcceeeeEEEecccceeEEEEecCCeEE
Q 000725 947 RSCALFTPDGQYLVLLDSMKTPYCREGRSDCLCSTCTSHRLDENAVKIVKVKPGYVSVVAKLKTDDCVQCILVCEPKHLI 1026 (1329)
Q Consensus 947 rsglqFTPDGQ~LvLlgsik~p~CR~~~~dC~Cs~C~~s~seDNtVKIv~V~~G~vsll~kL~~h~sV~cIlVcDpnhLV 1026 (1329)
-..+.|.++|+|.+ | -..++|+|+.--.+. ...+++....+..|.- ++-|.
T Consensus 71 g~~~vw~~~n~yAv----------~---------------~~~~~I~I~kn~~~~--~~k~i~~~~~~~~If~--G~LL~ 121 (443)
T PF04053_consen 71 GLSFVWSSRNRYAV----------L---------------ESSSTIKIYKNFKNE--VVKSIKLPFSVEKIFG--GNLLG 121 (443)
T ss_dssp -SEEEE-TSSEEEE----------E----------------TTS-EEEEETTEE---TT-----SS-EEEEE---SSSEE
T ss_pred eeEEEEecCccEEE----------E---------------ECCCeEEEEEcCccc--cceEEcCCcccceEEc--CcEEE
Confidence 34577888999988 2 126789997422222 2233433334554443 44444
Q ss_pred EecCCCeEEEEeccCcceEEEeeeeecCCCCcccceeEEEecCCCCCeeEecCCCccEEEEEccccceeee----eccCc
Q 000725 1027 AVGESGKLHLWEMNSSWSAQVEECIIPINDCIYPCIVEMKRIPKCAPLVVGHNGFGEFGIWDISKRVLVSR----FSAAR 1102 (1329)
Q Consensus 1027 SaSdDGkL~IWDM~SgWsm~tee~Vi~~n~~v~p~I~elKrFpkss~lIVTgSGDgtf~LWDIskg~llqs----F~ahs 1102 (1329)
..+ ++.|.+||+.++-.++... +. .+-.| -.++++++|+=.+ +.+|-|++-..-...+. ++.+=
T Consensus 122 ~~~-~~~i~~yDw~~~~~i~~i~--------v~-~vk~V-~Ws~~g~~val~t-~~~i~il~~~~~~~~~~~~~g~e~~f 189 (443)
T PF04053_consen 122 VKS-SDFICFYDWETGKLIRRID--------VS-AVKYV-IWSDDGELVALVT-KDSIYILKYNLEAVAAIPEEGVEDAF 189 (443)
T ss_dssp EEE-TTEEEEE-TTT--EEEEES--------S--E-EEE-EE-TTSSEEEEE--S-SEEEEEE-HHHHHHBTTTB-GGGE
T ss_pred EEC-CCCEEEEEhhHcceeeEEe--------cC-CCcEE-EEECCCCEEEEEe-CCeEEEEEecchhcccccccCchhce
Confidence 444 5599999999998887776 11 13334 6677777777665 55788877655411110 00011
Q ss_pred cceeE-eccccccccccCcceEECcc
Q 000725 1103 ASIYQ-FFPINLFSWQRNGSVSMDAS 1127 (1329)
Q Consensus 1103 ~sV~s-fsP~~s~S~d~~v~tfd~~s 1127 (1329)
..+.+ -..+.++-|++++-+|.+.+
T Consensus 190 ~~~~E~~~~IkSg~W~~d~fiYtT~~ 215 (443)
T PF04053_consen 190 ELIHEISERIKSGCWVEDCFIYTTSN 215 (443)
T ss_dssp EEEEEE-S--SEEEEETTEEEEE-TT
T ss_pred EEEEEecceeEEEEEEcCEEEEEcCC
Confidence 12222 33455889999988887776
No 398
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=23.13 E-value=1.5e+02 Score=25.81 Aligned_cols=28 Identities=18% Similarity=0.431 Sum_probs=25.9
Q ss_pred cceeEEEEe-cCCeEEEecCCCeEEEEec
Q 000725 1012 DCVQCILVC-EPKHLIAVGESGKLHLWEM 1039 (1329)
Q Consensus 1012 ~sV~cIlVc-DpnhLVSaSdDGkL~IWDM 1039 (1329)
..|+++.+| .-.-|+-+..||.|.|+.+
T Consensus 12 ~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl 40 (47)
T PF12894_consen 12 SRVSCMSWCPTMDLIALGTEDGEVLVYRL 40 (47)
T ss_pred CcEEEEEECCCCCEEEEEECCCeEEEEEC
Confidence 579999999 8889999999999999998
No 399
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=20.54 E-value=1.4e+03 Score=26.81 Aligned_cols=175 Identities=11% Similarity=0.035 Sum_probs=93.4
Q ss_pred cccceeeecCCCcEEEEecCccCccccCCCccccccccccccCCCCcEEEEEecCcceeeeEEEecccceeEEEEe-cCC
Q 000725 945 LERSCALFTPDGQYLVLLDSMKTPYCREGRSDCLCSTCTSHRLDENAVKIVKVKPGYVSVVAKLKTDDCVQCILVC-EPK 1023 (1329)
Q Consensus 945 ~ersglqFTPDGQ~LvLlgsik~p~CR~~~~dC~Cs~C~~s~seDNtVKIv~V~~G~vsll~kL~~h~sV~cIlVc-Dpn 1023 (1329)
.--.|+.++++|..+.- ....+++|.+.+.++-. +++...-=..-+.|.+. |..
T Consensus 74 ~~p~~i~v~~~~~~vyv-----------------------~~~~~~~v~vid~~~~~--~~~~~~vG~~P~~~~~~~~~~ 128 (381)
T COG3391 74 VYPAGVAVNPAGNKVYV-----------------------TTGDSNTVSVIDTATNT--VLGSIPVGLGPVGLAVDPDGK 128 (381)
T ss_pred ccccceeeCCCCCeEEE-----------------------ecCCCCeEEEEcCcccc--eeeEeeeccCCceEEECCCCC
Confidence 33468889999985440 23338899999855432 33332222466667777 443
Q ss_pred eEEEecC---CCeEEEEeccCcceEEEeeeeecCCCCcccceeEEEecCCCCC-eeEecCCCccEEEEEccccceee---
Q 000725 1024 HLIAVGE---SGKLHLWEMNSSWSAQVEECIIPINDCIYPCIVEMKRIPKCAP-LVVGHNGFGEFGIWDISKRVLVS--- 1096 (1329)
Q Consensus 1024 hLVSaSd---DGkL~IWDM~SgWsm~tee~Vi~~n~~v~p~I~elKrFpkss~-lIVTgSGDgtf~LWDIskg~llq--- 1096 (1329)
++.-+-- ++++-+-|-.+.-...+ .++ +-+| ..+ +|.+.+. ++++-..++++.+-|.+.-...+
T Consensus 129 ~vYV~n~~~~~~~vsvid~~t~~~~~~-~~v-----G~~P--~~~-a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~ 199 (381)
T COG3391 129 YVYVANAGNGNNTVSVIDAATNKVTAT-IPV-----GNTP--TGV-AVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSV 199 (381)
T ss_pred EEEEEecccCCceEEEEeCCCCeEEEE-Eec-----CCCc--ceE-EECCCCCeEEEEecCCCeEEEEeCCCcceecccc
Confidence 3333322 34444444444444443 211 1244 556 8888898 55566699999999965554443
Q ss_pred --eeccCcccee-Eecccc-------ccccccCcceEECcchhhh-c---cccccccccCCCceeecCCCCccceEEEEe
Q 000725 1097 --RFSAARASIY-QFFPIN-------LFSWQRNGSVSMDASLELT-N---TATTSLFSKHSEKSSFCPSVGEDSAIWLLV 1162 (1329)
Q Consensus 1097 --sF~ahs~sV~-sfsP~~-------s~S~d~~v~tfd~~s~d~~-l---eatv~~fSgdvn~VsF~P~sGeD~AiwLLV 1162 (1329)
.+.-...+-. .+.|++ .+++++.+...+..+.... . .... +..+ +.+.| | +.++.|
T Consensus 200 ~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~----v~~~p----~-g~~~yv 269 (381)
T COG3391 200 GSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSG-APRG----VAVDP----A-GKAAYV 269 (381)
T ss_pred ccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccC-CCCc----eeECC----C-CCEEEE
Confidence 1222222211 277777 3444445555555544443 1 1112 3344 78888 5 666665
Q ss_pred e
Q 000725 1163 S 1163 (1329)
Q Consensus 1163 S 1163 (1329)
.
T Consensus 270 ~ 270 (381)
T COG3391 270 A 270 (381)
T ss_pred E
Confidence 5
No 400
>PRK04804 minC septum formation inhibitor; Reviewed
Probab=20.34 E-value=3.6e+02 Score=29.83 Aligned_cols=78 Identities=19% Similarity=0.231 Sum_probs=55.9
Q ss_pred cceecCCCCCCCceeeecCCCeEEeecCCCeEEEEEccccceeeeeecccCceEEEEEecCCCCceEEEecCCCCCCccc
Q 000725 1195 NRVILGSPLDPRASAIGASSGLGIIGTNDGLVYAWELSSGNKLGILHHFKGGTVSCIATDDSGLQALAVAGDGPDGGRRQ 1274 (1329)
Q Consensus 1195 ~siI~Gs~ldpra~afs~SG~~gfaGT~DGlVYmWDLstG~kL~tL~~Heg~rVSCVA~dps~p~~~AsA~d~~d~~~r~ 1274 (1329)
+=||+|. .-.|.-+++ ||.|++|=-+.|+-+...++=++-+|.|.... |.=+.+|+ ..|.
T Consensus 133 dliIlGd---------Vn~GAEViA---~GnI~V~G~LrG~a~AG~~Gd~~A~I~a~~l~---~elv~Iag-----~y~~ 192 (221)
T PRK04804 133 DLVILGA---------VSNGAEVIA---DGSIHIYGTLRGRAIAGASGDKEAVIICHSLE---AELVSIAG-----QYWL 192 (221)
T ss_pred CEEEEcc---------CCCCCEEEe---CCCEEEEEEeccEEEecCCCCCccEEEeccCC---ccEEEECC-----EEEe
Confidence 5677777 345666665 68899999999999999999999999999999 55467773 1222
Q ss_pred cC--CCCCCCCcEEEeeeCC
Q 000725 1275 RD--PRHGQNDHVRIWKMDP 1292 (1329)
Q Consensus 1275 ~~--~~~s~D~~VRiW~~~~ 1292 (1329)
-+ |..-|..-|+||-.+.
T Consensus 193 ~e~~~~~~~~~~v~i~l~~~ 212 (221)
T PRK04804 193 SENIQQHSWQKSVCIRLDGE 212 (221)
T ss_pred cccCChhhcCCCEEEEEeCC
Confidence 22 3445666677766443
No 401
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=20.23 E-value=1.5e+02 Score=23.13 Aligned_cols=29 Identities=14% Similarity=0.282 Sum_probs=24.7
Q ss_pred CCeeEecCCCccEEEEEccccceeeeecc
Q 000725 1072 APLVVGHNGFGEFGIWDISKRVLVSRFSA 1100 (1329)
Q Consensus 1072 s~lIVTgSGDgtf~LWDIskg~llqsF~a 1100 (1329)
..+.++.-+++++.++|..++..+.++.-
T Consensus 4 ~~lyv~~~~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 4 TKLYVTNSGSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence 45778888999999999999998888765
Done!