Query 000725
Match_columns 1329
No_of_seqs 78 out of 80
Neff 2.8
Searched_HMMs 29240
Date Tue Mar 26 16:29:35 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000725.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_497-501//hhsearch_pdb/000725hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vyh_C Platelet-activating fac 1.0 1 1 277.5 26.6 270 946-1290 110-409 (410)
2 2pbi_B Guanine nucleotide-bind 1.0 1 1 263.1 28.8 271 946-1289 66-354 (354)
3 1got_B GT-beta; complex (GTP-b 1.0 1 1 259.6 29.3 270 946-1289 57-340 (340)
4 3iz6_a 40S ribosomal protein R 1.0 1 1 256.9 25.3 286 946-1292 68-375 (380)
5 4gqb_B Methylosome protein 50; 1.0 1 1 256.4 25.4 274 946-1292 32-331 (344)
6 4ery_A WD repeat-containing pr 1.0 1 1 254.2 29.4 272 946-1291 25-311 (312)
7 3ow8_A WD repeat-containing pr 1.0 1 1 250.1 29.7 269 946-1291 34-320 (321)
8 4g56_B MGC81050 protein; prote 1.0 1 1 249.9 24.7 275 946-1292 44-343 (357)
9 2ynn_A Coatomer subunit beta'; 1.0 1 1 246.6 29.1 270 945-1291 14-301 (304)
10 1nr0_A Actin interacting prote 1.0 1 1 244.8 25.7 279 947-1293 193-568 (611)
No 1
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=1.00 E-value=1 Score=277.49 Aligned_cols=270 Identities=13% Similarity=0.145 Sum_probs=229.6
Q ss_pred CCCEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEECC-CCEEEEEEE-CCC
Q ss_conf 122016667986899823766764347986445665445667778179998257620145788314-543699972-398
Q 000725 946 ERSCALFTPDGQYLVLLDSMKTPYCREGRSDCLCSTCTSHRLDENAVKIVKVKPGYVSVVAKLKTD-DCVQCILVC-EPK 1023 (1329)
Q Consensus 946 ersglqFTPDGQ~LvLlgsik~p~CR~~~~dC~Cs~C~~s~seDNtVKIv~V~~G~vsll~kL~ah-~sV~cIlVc-Dpn 1023 (1329)
..++++|.|||++|+ +++.|++|+||++.+|. ++.+|.+| +.|.||.+. +.+
T Consensus 110 ~V~~~~~~p~~~~l~------------------------s~s~Dg~i~vwd~~~~~--~~~~l~~h~~~V~~v~~~~~~~ 163 (410)
T 1vyh_C 110 PVTRVIFHPVFSVMV------------------------SASEDATIKVWDYETGD--FERTLKGHTDSVQDISFDHSGK 163 (410)
T ss_dssp CEEEEEECSSSSEEE------------------------EEESSSCEEEEETTTCC--CCEEECCCSSCEEEEEECTTSS
T ss_pred CEEEEEECCCCCEEE------------------------EEECCCEEEEEECCCCC--EEEEEECCCCCEEEEEECCCCC
T ss_conf 689999969999899------------------------99389859999899993--7788816678687899859999
Q ss_pred EEEEECCCCEEEEEECCCCCEEEEEEEEECCCCCCCCCEEEEEECCCCCCEEEECCCCCCEEEEECCCCCEEEEECCCCC
Q ss_conf 49995489819999525763277764120689975551168773179999267137874289987335523436304766
Q 000725 1024 HLIAVGESGKLHLWEMNSSWSAQVEECIIPINDCIYPCIVEMKRIPKCAPLVVGHNGFGEFGIWDISKRVLVSRFSAARA 1103 (1329)
Q Consensus 1024 hLVSaSdDGkL~IWDM~SgWsi~tee~Vi~~n~gv~p~I~elKrFpkss~lIITgSGDgtf~LWDIskg~liqtF~ahs~ 1103 (1329)
+|++++.||+|++||+.++-...+.. +|...|..+ .|.++...+++++.|+++++||+.++.++.+|.+|..
T Consensus 164 ~l~sgs~D~~i~iwd~~~~~~~~~~~-------~h~~~V~~v-~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~ 235 (410)
T 1vyh_C 164 LLASCSADMTIKLWDFQGFECIRTMH-------GHDHNVSSV-SIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHRE 235 (410)
T ss_dssp EEEEEETTSCCCEEETTSSCEEECCC-------CCSSCEEEE-EECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSS
T ss_pred EEEEEECCCEEEEEECCCCCEEEEEC-------CCCCCEEEE-EEECCCCEEEEEECCCEEEEEECCCCCEEEEEECCCC
T ss_conf 99999189819999589982669982-------899977899-9967999999996899699998999948999927886
Q ss_pred CEEE--ECCCC----CCCCCCCCCEEECCCHHHH--CCCCCCCCCCCCCCEEECCCCC----------------CCCEEE
Q ss_conf 5158--64566----4333467313777403343--0233451002787234168988----------------564178
Q 000725 1104 SIYQ--FFPIN----LFSWQRNGSVSMDASLELT--NTATTSLFSKHSEKSSFCPSVG----------------EDSAIW 1159 (1329)
Q Consensus 1104 sV~s--fsPi~----s~S~d~~v~ifd~~svE~~--leatv~~fSgdvn~VsF~P~sG----------------eD~Aiw 1159 (1329)
.|.. ++|++ +++.|+.+++|+..+.+.. +..+...+.. +.|.|... .+ +.+
T Consensus 236 ~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~----~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~ 310 (410)
T 1vyh_C 236 WVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVEC----ISWAPESSYSSISEATGSETKKSGKP-GPF 310 (410)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEE----EEECCSCGGGGGGGCCSCC--------CCE
T ss_pred CEEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEEECCCCCEEEE----EEECCCCCCCCHHHHCCCCCCCCCCC-CCE
T ss_conf 2899999899999999918990999989897436673378745899----99858655431012125555566788-889
Q ss_pred EEEECCCCCCHHHCCC----CCCCCCCCCCEEEEEEEECCCEECCCCCCCCCEEEECCCCEEEEECCCCEEEEEECCCCC
Q ss_conf 8862157310111033----465578986236877640340412799998730452078808950389909999835564
Q 000725 1160 LLVSTISDSDAQHNCM----SRDCQKNPVRFWRLALLVKNRVILGSPLDPRASAIGASSGLGIIGTNDGLVYAWELSSGN 1235 (1329)
Q Consensus 1160 LLVST~Sdd~tl~Dlr----a~~~~gH~n~~wRLALl~K~siI~Gs~ldpra~afs~SG~~gfaGT~DGlVYmWDLstG~ 1235 (1329)
|++++.+..+++||++ ...+.+|.++.+. ++|+++|.++++|+.||.|++||+.+++
T Consensus 311 l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~-------------------v~~~~~g~~l~s~s~D~~i~vwd~~~~~ 371 (410)
T 1vyh_C 311 LLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRG-------------------VLFHSGGKFILSCADDKTLRVWDYKNKR 371 (410)
T ss_dssp EEEEETTSEEEEEETTTTEEEEEEECCSSCEEE-------------------EEECSSSSCEEEEETTTEEEEECCTTSC
T ss_pred EEEEECCCEEEEEECCCCCEEEEEECCCCCEEE-------------------EEECCCCCEEEEEECCCEEEEEECCCCC
T ss_conf 999938984999988999669999778885899-------------------9994998999999597929999899990
Q ss_pred EEEEEECCCCCEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf 4533310159659999964899732899248999985456898888982899551
Q 000725 1236 KLGILHHFKGGTVSCIATDDSGLQALAVAGDGPDGGRRQRDPRHGQNDHVRIWKM 1290 (1329)
Q Consensus 1236 kL~tL~~Heg~rVSCVA~dps~p~~iAvA~d~~d~~~r~~~~~~s~D~~VRiW~~ 1290 (1329)
.+.++.+|.+ .|+|++.+|.++. +|++ |.|++||||..
T Consensus 372 ~~~~~~~h~~-~v~~l~~~~~~~~-l~sg---------------s~D~~i~vW~~ 409 (410)
T 1vyh_C 372 CMKTLNAHEH-FVTSLDFHKTAPY-VVTG---------------SVDQTVKVWEC 409 (410)
T ss_dssp CCEEEECCSS-CEEEEEECSSSSC-EEEE---------------ETTSEEEEEC-
T ss_pred EEEEECCCCC-CEEEEEECCCCCE-EEEE---------------ECCCCEEEEEC
T ss_conf 6899847778-6899998289999-9999---------------27994899737
No 2
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=1.00 E-value=1 Score=263.09 Aligned_cols=271 Identities=14% Similarity=0.185 Sum_probs=232.9
Q ss_pred CCCEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEECC-CCEEEEEEE-CCC
Q ss_conf 122016667986899823766764347986445665445667778179998257620145788314-543699972-398
Q 000725 946 ERSCALFTPDGQYLVLLDSMKTPYCREGRSDCLCSTCTSHRLDENAVKIVKVKPGYVSVVAKLKTD-DCVQCILVC-EPK 1023 (1329)
Q Consensus 946 ersglqFTPDGQ~LvLlgsik~p~CR~~~~dC~Cs~C~~s~seDNtVKIv~V~~G~vsll~kL~ah-~sV~cIlVc-Dpn 1023 (1329)
..++++|+|||++|+ +++.|++|+||++.++. ....+..| ..|.++.+. +.+
T Consensus 66 ~V~~~~~s~d~~~l~------------------------s~s~Dg~v~vWd~~~~~--~~~~~~~~~~~v~~~~~sp~g~ 119 (354)
T 2pbi_B 66 KVLCMDWCKDKRRIV------------------------SSSQDGKVIVWDSFTTN--KEHAVTMPCTWVMACAYAPSGC 119 (354)
T ss_dssp CEEEEEECTTSSEEE------------------------EEETTSEEEEEETTTCC--EEEEEECSSSCCCEEEECTTSS
T ss_pred EEEEEEECCCCCEEE------------------------EEECCCEEEEEECCCCC--CCEEEECCCCCEEEEEECCCCC
T ss_conf 088999989999899------------------------99289829999899987--5357742788779999989999
Q ss_pred EEEEECCCCEEEEEECCCCC------EEEEEEEEECCCCCCCCCEEEEEECCCCCCEEEECCCCCCEEEEECCCCCEEEE
Q ss_conf 49995489819999525763------277764120689975551168773179999267137874289987335523436
Q 000725 1024 HLIAVGESGKLHLWEMNSSW------SAQVEECIIPINDCIYPCIVEMKRIPKCAPLVVGHNGFGEFGIWDISKRVLVSR 1097 (1329)
Q Consensus 1024 hLVSaSdDGkL~IWDM~SgW------si~tee~Vi~~n~gv~p~I~elKrFpkss~lIITgSGDgtf~LWDIskg~liqt 1097 (1329)
++++++.|+++.+|++.... ...... +|...|..+ .|.+++..|+++++|+++++||+++++++++
T Consensus 120 ~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~-------~h~~~v~~~-~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~ 191 (354)
T 2pbi_B 120 AIACGGLDNKCSVYPLTFDKNENMAAKKKSVA-------MHTNYLSAC-SFTNSDMQILTASGDGTCALWDVESGQLLQS 191 (354)
T ss_dssp EEEEESTTSEEEEEECCCCTTCCSGGGCEEEE-------ECSSCEEEE-EECSSSSEEEEEETTSEEEEEETTTCCEEEE
T ss_pred EEEEEECCCCEEEEEEECCCCCCCCCCCEEEE-------CCCCCEEEE-EEECCCCEEEEEECCCCEEEEECCCCEEEEE
T ss_conf 79971389988999974256655333311630-------667847899-9968999999991899589976777819999
Q ss_pred ECCCCCCEEE--ECCC--C----CCCCCCCCCEEECCCHHHH--CCCCCCCCCCCCCCEEECCCCCCCCEEEEEEECCCC
Q ss_conf 3047665158--6456--6----4333467313777403343--023345100278723416898856417888621573
Q 000725 1098 FSAARASIYQ--FFPI--N----LFSWQRNGSVSMDASLELT--NTATTSLFSKHSEKSSFCPSVGEDSAIWLLVSTISD 1167 (1329)
Q Consensus 1098 F~ahs~sV~s--fsPi--~----s~S~d~~v~ifd~~svE~~--leatv~~fSgdvn~VsF~P~sGeD~AiwLLVST~Sd 1167 (1329)
|.+|...|.+ |.|. + +++.|+.+++|+..++... +..+..++.. +.|+| + +..|++++.+.
T Consensus 192 ~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~----v~~~p----~-~~~l~s~s~D~ 262 (354)
T 2pbi_B 192 FHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNS----VRYYP----S-GDAFASGSDDA 262 (354)
T ss_dssp EECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEE----EEECT----T-SSEEEEEETTS
T ss_pred ECCCCCCEEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEE----EEEEC----C-CCEEEEEECCC
T ss_conf 927899869999875799999999947995999988899277983588788179----99958----9-99899996998
Q ss_pred CCHHHCCCCCCCCCCCCCEEEEEEEECCCEECCCCCCCCCEEEECCCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCE
Q ss_conf 10111033465578986236877640340412799998730452078808950389909999835564453331015965
Q 000725 1168 SDAQHNCMSRDCQKNPVRFWRLALLVKNRVILGSPLDPRASAIGASSGLGIIGTNDGLVYAWELSSGNKLGILHHFKGGT 1247 (1329)
Q Consensus 1168 d~tl~Dlra~~~~gH~n~~wRLALl~K~siI~Gs~ldpra~afs~SG~~gfaGT~DGlVYmWDLstG~kL~tL~~Heg~r 1247 (1329)
..++||++... .+..+.....+++. ++++|+++|+++++|+.|+.|++||+.+|+.+..+.+|.+ .
T Consensus 263 ~v~lwd~~~~~---------~~~~~~~~~~~~~~----~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~-~ 328 (354)
T 2pbi_B 263 TCRLYDLRADR---------EVAIYSKESIIFGA----SSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHEN-R 328 (354)
T ss_dssp CEEEEETTTTE---------EEEEECCTTCCSCE----EEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSS-C
T ss_pred EEEEEECCCCC---------EEEEECCCCCCCCE----EEEEEECCCCEEEEEECCCCEEEEECCCCCEEEEEECCCC-C
T ss_conf 19999888996---------78887478740345----5999947999999997899299998988955779987899-5
Q ss_pred EEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf 999996489973289924899998545689888898289955
Q 000725 1248 VSCIATDDSGLQALAVAGDGPDGGRRQRDPRHGQNDHVRIWK 1289 (1329)
Q Consensus 1248 VSCVA~dps~p~~iAvA~d~~d~~~r~~~~~~s~D~~VRiW~ 1289 (1329)
|+|++.+|.+.. +|++ |+|++||||.
T Consensus 329 v~~l~~spdg~~-l~sg---------------s~D~~v~vW~ 354 (354)
T 2pbi_B 329 VSTLRVSPDGTA-FCSG---------------SWDHTLRVWA 354 (354)
T ss_dssp EEEEEECTTSSC-EEEE---------------ETTSEEEEEC
T ss_pred EEEEEECCCCCE-EEEE---------------CCCCCEEECC
T ss_conf 789999899999-9998---------------2888889619
No 3
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=1.00 E-value=1 Score=259.63 Aligned_cols=270 Identities=13% Similarity=0.177 Sum_probs=227.5
Q ss_pred CCCEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEECC-CCEEEEEEE-CCC
Q ss_conf 122016667986899823766764347986445665445667778179998257620145788314-543699972-398
Q 000725 946 ERSCALFTPDGQYLVLLDSMKTPYCREGRSDCLCSTCTSHRLDENAVKIVKVKPGYVSVVAKLKTD-DCVQCILVC-EPK 1023 (1329)
Q Consensus 946 ersglqFTPDGQ~LvLlgsik~p~CR~~~~dC~Cs~C~~s~seDNtVKIv~V~~G~vsll~kL~ah-~sV~cIlVc-Dpn 1023 (1329)
..++++|+|||++|+ +++.|++|+||++..+. .+.++..| ..|.++.+. +.+
T Consensus 57 ~v~~~~~s~d~~~l~------------------------s~s~Dg~v~iWd~~~~~--~~~~~~~~~~~v~~~~~s~~~~ 110 (340)
T 1got_B 57 KIYAMHWGTDSRLLL------------------------SASQDGKLIIWDSYTTN--KVHAIPLRSSWVMTCAYAPSGN 110 (340)
T ss_dssp CEEEEEECTTSSEEE------------------------EEETTTEEEEEETTTCC--EEEEEECSSSCEEEEEECTTSS
T ss_pred CEEEEEECCCCCEEE------------------------EEECCCCEEEEECCCCC--CCEEEECCCCCEEEEEECCCCC
T ss_conf 368999889999999------------------------98188968999899987--4337603886188999999999
Q ss_pred EEEEECCCCEEEEEECCCCC----EEEEEEEEECCCCCCCCCEEEEEECCCCCCEEEECCCCCCEEEEECCCCCEEEEEC
Q ss_conf 49995489819999525763----27776412068997555116877317999926713787428998733552343630
Q 000725 1024 HLIAVGESGKLHLWEMNSSW----SAQVEECIIPINDCIYPCIVEMKRIPKCAPLVVGHNGFGEFGIWDISKRVLVSRFS 1099 (1329)
Q Consensus 1024 hLVSaSdDGkL~IWDM~SgW----si~tee~Vi~~n~gv~p~I~elKrFpkss~lIITgSGDgtf~LWDIskg~liqtF~ 1099 (1329)
++++++.||.+.+|++.+.- ...... +|...|..+ .|.+ +..++++++|+++++||+.++.++.+|.
T Consensus 111 ~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~-------~h~~~v~~~-~~~~-~~~l~s~s~d~~i~~wd~~~~~~~~~~~ 181 (340)
T 1got_B 111 YVACGGLDNICSIYNLKTREGNVRVSRELA-------GHTGYLSCC-RFLD-DNQIVTSSGDTTCALWDIETGQQTTTFT 181 (340)
T ss_dssp EEEEEETTCEEEEEETTTCSBSCEEEEEEE-------CCSSCEEEE-EEEE-TTEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred EEEEEECCCEEEEEECCCCCCCCEEEEEEC-------CCCCCEEEE-EECC-CCCEEEEECCCCEEEEECCCCCEEEEEC
T ss_conf 999980898199997966888613677844-------877638999-9879-9969999899929999899991889976
Q ss_pred CCCCCEEE--ECCCC----CCCCCCCCCEEECCCHHHH--CCCCCCCCCCCCCCEEECCCCCCCCEEEEEEECCCCCCHH
Q ss_conf 47665158--64566----4333467313777403343--0233451002787234168988564178886215731011
Q 000725 1100 AARASIYQ--FFPIN----LFSWQRNGSVSMDASLELT--NTATTSLFSKHSEKSSFCPSVGEDSAIWLLVSTISDSDAQ 1171 (1329)
Q Consensus 1100 ahs~sV~s--fsPi~----s~S~d~~v~ifd~~svE~~--leatv~~fSgdvn~VsF~P~sGeD~AiwLLVST~Sdd~tl 1171 (1329)
+|...|++ |+|++ +++.|+.+++|+..++... +..+..++.. +.|+| + +..|++++.+...++
T Consensus 182 ~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~----v~~~p----~-~~~l~s~s~d~~v~i 252 (340)
T 1got_B 182 GHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINA----ICFFP----N-GNAFATGSDDATCRL 252 (340)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEE----EEECT----T-SSEEEEEETTSCEEE
T ss_pred CCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEECCCCCCEEE----EEECC----C-CCEEEEECCCCCEEE
T ss_conf 99986689999899999999938993999778998167897487687799----99949----9-998999748981999
Q ss_pred HCCCCCCCCCCCCCEEEEEEEECCCEECCCCCCCCCEEEECCCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCEEEEE
Q ss_conf 10334655789862368776403404127999987304520788089503899099998355644533310159659999
Q 000725 1172 HNCMSRDCQKNPVRFWRLALLVKNRVILGSPLDPRASAIGASSGLGIIGTNDGLVYAWELSSGNKLGILHHFKGGTVSCI 1251 (1329)
Q Consensus 1172 ~Dlra~~~~gH~n~~wRLALl~K~siI~Gs~ldpra~afs~SG~~gfaGT~DGlVYmWDLstG~kL~tL~~Heg~rVSCV 1251 (1329)
||++... .+..+..+..+.+. ++++|+++|+++++|+.||.|++||+.++..+..+.+|++ .|+|+
T Consensus 253 wd~~~~~---------~~~~~~~~~~~~~v----~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~-~v~~~ 318 (340)
T 1got_B 253 FDLRADQ---------ELMTYSHDNIICGI----TSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDN-RVSCL 318 (340)
T ss_dssp EETTTTE---------EEEEECCTTCCSCE----EEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSS-CEEEE
T ss_pred EECCCCC---------EEEEECCCCCCCCE----EEEEECCCCCEEEEECCCCEEEEEECCCCCEEEEEECCCC-CEEEE
T ss_conf 9889991---------89997268852416----9999989999999977999099988413838658505778-48899
Q ss_pred EECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf 96489973289924899998545689888898289955
Q 000725 1252 ATDDSGLQALAVAGDGPDGGRRQRDPRHGQNDHVRIWK 1289 (1329)
Q Consensus 1252 A~dps~p~~iAvA~d~~d~~~r~~~~~~s~D~~VRiW~ 1289 (1329)
+.+|.+.. +|++ |.|++||||.
T Consensus 319 ~~s~dg~~-l~s~---------------s~D~~i~iWd 340 (340)
T 1got_B 319 GVTDDGMA-VATG---------------SWDSFLKIWN 340 (340)
T ss_dssp EECTTSSC-EEEE---------------ETTSCEEEEC
T ss_pred EECCCCCE-EEEE---------------CCCCCEEECC
T ss_conf 98299998-9997---------------2886189559
No 4
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=1.00 E-value=1 Score=256.88 Aligned_cols=286 Identities=13% Similarity=0.151 Sum_probs=223.1
Q ss_pred CCCEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEECC-CCEEEEEEE-CCC
Q ss_conf 122016667986899823766764347986445665445667778179998257620145788314-543699972-398
Q 000725 946 ERSCALFTPDGQYLVLLDSMKTPYCREGRSDCLCSTCTSHRLDENAVKIVKVKPGYVSVVAKLKTD-DCVQCILVC-EPK 1023 (1329)
Q Consensus 946 ersglqFTPDGQ~LvLlgsik~p~CR~~~~dC~Cs~C~~s~seDNtVKIv~V~~G~vsll~kL~ah-~sV~cIlVc-Dpn 1023 (1329)
..++++|+|||++|+ +++.|++||||++.+|. .+.++.+| ..|.++.+. +.+
T Consensus 68 ~V~~~~~sp~~~~l~------------------------s~s~D~~v~iWd~~~~~--~~~~~~~h~~~v~~~~~s~~g~ 121 (380)
T 3iz6_a 68 KVYSLDWTPEKNWIV------------------------SASQDGRLIVWNALTSQ--KTHAIKLHCPWVMECAFAPNGQ 121 (380)
T ss_dssp CEEEEEECTTSSCEE------------------------EEETTSEEEEEETTTTE--EEEEEECCCTTCCCCEECTTSS
T ss_pred EEEEEEECCCCCEEE------------------------EEECCCEEEEEECCCCC--CCEEEECCCCCEEEEEECCCCC
T ss_conf 778999968999899------------------------99189809998788886--0148855998789999989999
Q ss_pred EEEEECCCCEEEEEECCCCCEEEEEEEEECCCCCCCCCEEEEEECCCCCCEEEECCCCCCEEEEECCCCCEEEEE-----
Q ss_conf 499954898199995257632777641206899755511687731799992671378742899873355234363-----
Q 000725 1024 HLIAVGESGKLHLWEMNSSWSAQVEECIIPINDCIYPCIVEMKRIPKCAPLVVGHNGFGEFGIWDISKRVLVSRF----- 1098 (1329)
Q Consensus 1024 hLVSaSdDGkL~IWDM~SgWsi~tee~Vi~~n~gv~p~I~elKrFpkss~lIITgSGDgtf~LWDIskg~liqtF----- 1098 (1329)
+|++++.|+.+.+|++.+........-+.....+|...+..+.-+|.....+++++.|+++++||+.+++++..|
T Consensus 122 ~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~ 201 (380)
T 3iz6_a 122 SVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFP 201 (380)
T ss_dssp EEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSS
T ss_pred EEEEEECCCCEEEEECCCCCCCCCCCCCEEECCCCCCCEEEEEEECCCCCEEEEECCCCCEEEEECCCCCEEEEEECCCC
T ss_conf 89995479858999897775556773312640689754689999648997899977998199998677957899605667
Q ss_pred CCCCCCEEE--ECC-CC----CCCCCCCCCEEECCCHHHH---CCCCCCCCCCCCCCEEECCCCCCCCEEEEEEECCCCC
Q ss_conf 047665158--645-66----4333467313777403343---0233451002787234168988564178886215731
Q 000725 1099 SAARASIYQ--FFP-IN----LFSWQRNGSVSMDASLELT---NTATTSLFSKHSEKSSFCPSVGEDSAIWLLVSTISDS 1168 (1329)
Q Consensus 1099 ~ahs~sV~s--fsP-i~----s~S~d~~v~ifd~~svE~~---leatv~~fSgdvn~VsF~P~sGeD~AiwLLVST~Sdd 1168 (1329)
.+|...|++ ++| ++ +++.|+.+++|+....... +.++.. .++.+.|+| | +..|+.++.+..
T Consensus 202 ~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~----~v~~v~~~p----~-~~~l~s~s~D~~ 272 (380)
T 3iz6_a 202 SGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEG----DINSVKFFP----D-GQRFGTGSDDGT 272 (380)
T ss_dssp SSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSS----CCCEEEECT----T-SSEEEEECSSSC
T ss_pred CCCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCCCEEEECCCCC----CEEEEEEEC----C-CCEEEEECCCCE
T ss_conf 8875676999920699998999978986999978889734699887488----757999916----9-996999838996
Q ss_pred CHHHCCCCCCCCCCCCCEEEEEEEECCCEECCCCC-CCCCEEEECCCCEEEEECCCCEEEEEECCCCCEEEEE----ECC
Q ss_conf 01110334655789862368776403404127999-9873045207880895038990999983556445333----101
Q 000725 1169 DAQHNCMSRDCQKNPVRFWRLALLVKNRVILGSPL-DPRASAIGASSGLGIIGTNDGLVYAWELSSGNKLGIL----HHF 1243 (1329)
Q Consensus 1169 ~tl~Dlra~~~~gH~n~~wRLALl~K~siI~Gs~l-dpra~afs~SG~~gfaGT~DGlVYmWDLstG~kL~tL----~~H 1243 (1329)
.++||++... .+..|....-.....+ -.++++|+++|+++++|+.||.|++||+.+++.+..+ .+|
T Consensus 273 i~lwd~~~~~---------~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h 343 (380)
T 3iz6_a 273 CRLFDMRTGH---------QLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSH 343 (380)
T ss_dssp EEEEETTTTE---------EEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSC
T ss_pred EEEEECCCCC---------EEEEECCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCC
T ss_conf 9999888996---------8898615655566556863899988999989999799979999887781578970236777
Q ss_pred CCCEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECC
Q ss_conf 5965999996489973289924899998545689888898289955189
Q 000725 1244 KGGTVSCIATDDSGLQALAVAGDGPDGGRRQRDPRHGQNDHVRIWKMDP 1292 (1329)
Q Consensus 1244 eg~rVSCVA~dps~p~~iAvA~d~~d~~~r~~~~~~s~D~~VRiW~~~~ 1292 (1329)
++ .|+|++.+|.+.. +|++ |+|++||||....
T Consensus 344 ~~-~v~~l~~s~dg~~-l~sg---------------s~D~~i~iW~~~~ 375 (380)
T 3iz6_a 344 EG-RISCLGLSSDGSA-LCTG---------------SWDKNLKIWAFSG 375 (380)
T ss_dssp CC-CCCEEEECSSSSE-EEEE---------------CTTSCEEEEECCS
T ss_pred CC-CEEEEEECCCCCE-EEEE---------------ECCCCEEEEECCC
T ss_conf 78-4579998999998-9996---------------0899889995378
No 5
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=1.00 E-value=1 Score=256.41 Aligned_cols=274 Identities=12% Similarity=0.044 Sum_probs=218.5
Q ss_pred CCCEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCC----------EEEEEEEECCCCEE
Q ss_conf 12201666798689982376676434798644566544566777817999825762----------01457883145436
Q 000725 946 ERSCALFTPDGQYLVLLDSMKTPYCREGRSDCLCSTCTSHRLDENAVKIVKVKPGY----------VSVVAKLKTDDCVQ 1015 (1329)
Q Consensus 946 ersglqFTPDGQ~LvLlgsik~p~CR~~~~dC~Cs~C~~s~seDNtVKIv~V~~G~----------vsll~kL~ah~sV~ 1015 (1329)
...+++|+|||++|+ .++ |.++|+|+..... ......+.....|.
T Consensus 32 ~v~~~~fs~dG~~l~------------------------~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 86 (344)
T 4gqb_B 32 QLEAARYRSDGALLL------------------------GAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVA 86 (344)
T ss_dssp EEEEEEECTTSCEEE------------------------EEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEE
T ss_pred CEEEEEECCCCCEEE------------------------EEE-CCCEEEEECEEEEECCCCCCCCCCEEEEEECCCCCEE
T ss_conf 888999989999999------------------------990-8956876230565036555677654666603679878
Q ss_pred EEEEECCCEEEEECCCCEEEEEECCCCCEEEEEEEEECCCCCCCCCEEEEEECCCCCCEEEECCCCCCEEEEECCCCCEE
Q ss_conf 99972398499954898199995257632777641206899755511687731799992671378742899873355234
Q 000725 1016 CILVCEPKHLIAVGESGKLHLWEMNSSWSAQVEECIIPINDCIYPCIVEMKRIPKCAPLVVGHNGFGEFGIWDISKRVLV 1095 (1329)
Q Consensus 1016 cIlVcDpnhLVSaSdDGkL~IWDM~SgWsi~tee~Vi~~n~gv~p~I~elKrFpkss~lIITgSGDgtf~LWDIskg~li 1095 (1329)
|+.|...+++++++.||+|+|||+.++-...+..+.. .+|...|..+ .|.++..+|++|+.|+++++||++++.++
T Consensus 87 ~~~~s~d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~---~~H~~~V~~v-~~spdg~~l~sgs~d~~i~iwd~~~~~~~ 162 (344)
T 4gqb_B 87 DLTWVGERGILVASDSGAVELWELDENETLIVSKFCK---YEHDDIVSTV-SVLSSGTQAVSGSKDICIKVWDLAQQVVL 162 (344)
T ss_dssp EEEEETTTEEEEEETTSEEEEEEECTTSSCEEEEEEE---ECCSSCEEEE-EECTTSSEEEEEETTSCEEEEETTTTEEE
T ss_pred EEEEECCCEEEEEECCCEEEEEECCCCCCEEEEECCC---CCCCCCEEEE-EECCCCCEEEEEECCCEEEEEECCCCCEE
T ss_conf 9999299829999897989999653887435860134---6789978999-99899899999949893999999999699
Q ss_pred EEECCCCCCEEE--ECCCC-----CCCCCCCCCEEECCCHHHHC--C--CCCCCCCCCCCCEEECCCCCCCCEEEEEEEC
Q ss_conf 363047665158--64566-----43334673137774033430--2--3345100278723416898856417888621
Q 000725 1096 SRFSAARASIYQ--FFPIN-----LFSWQRNGSVSMDASLELTN--T--ATTSLFSKHSEKSSFCPSVGEDSAIWLLVST 1164 (1329)
Q Consensus 1096 qtF~ahs~sV~s--fsPi~-----s~S~d~~v~ifd~~svE~~l--e--atv~~fSgdvn~VsF~P~sGeD~AiwLLVST 1164 (1329)
++|.+|...|++ |+|++ +++.|+.+++|+..+.+... . .+...+ ..+.|+| .+ ...|.+++
T Consensus 163 ~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~----~~~~~~p---~~-~~~l~sg~ 234 (344)
T 4gqb_B 163 SSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLP----TSLAWHP---QQ-SEVFVFGD 234 (344)
T ss_dssp EEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCE----EEEEECS---SC-TTEEEEEE
T ss_pred EEECCCCCCEEEEEECCCCCCCEEEECCCCCCCCCCCCCCCEEEEEECCEEECCC----EEEEECC---CC-CCCEEEEC
T ss_conf 9975768855788865899974011034435510234455200111010000121----2356617---99-96058861
Q ss_pred CCCCCHHHCCC----CCCCCCCCCCEEEEEEEECCCEECCCCCCCCCEEEECCC-CEEEEECCCCEEEEEECCCCCEEEE
Q ss_conf 57310111033----465578986236877640340412799998730452078-8089503899099998355644533
Q 000725 1165 ISDSDAQHNCM----SRDCQKNPVRFWRLALLVKNRVILGSPLDPRASAIGASS-GLGIIGTNDGLVYAWELSSGNKLGI 1239 (1329)
Q Consensus 1165 ~Sdd~tl~Dlr----a~~~~gH~n~~wRLALl~K~siI~Gs~ldpra~afs~SG-~~gfaGT~DGlVYmWDLstG~kL~t 1239 (1329)
.+..+++||++ ..++.+|...++. ++|++.| +++++|+.|+.|++||+.+++. ..
T Consensus 235 ~dg~v~~wd~~~~~~~~~~~~h~~~v~~-------------------v~fsp~g~~~lasgs~D~~i~vwd~~~~~~-~~ 294 (344)
T 4gqb_B 235 ENGTVSLVDTKSTSCVLSSAVHSQCVTG-------------------LVFSPHSVPFLASLSEDCSLAVLDSSLSEL-FR 294 (344)
T ss_dssp TTSEEEEEESCC--CCEEEECCSSCEEE-------------------EEECSSSSCCEEEEETTSCEEEECTTCCEE-EE
T ss_pred CCCCEEEEECCCCCEEEEECCCCCCEEE-------------------EEECCCCCEEEEEEECCCEEEEEECCCCCE-EE
T ss_conf 5871898989999598998378899889-------------------999269990999993899499999999969-99
Q ss_pred EECCCCCEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECC
Q ss_conf 31015965999996489973289924899998545689888898289955189
Q 000725 1240 LHHFKGGTVSCIATDDSGLQALAVAGDGPDGGRRQRDPRHGQNDHVRIWKMDP 1292 (1329)
Q Consensus 1240 L~~Heg~rVSCVA~dps~p~~iAvA~d~~d~~~r~~~~~~s~D~~VRiW~~~~ 1292 (1329)
+.+|++ .|.+|+.+|.+...+|++ |+|++|++|..+.
T Consensus 295 ~~~H~~-~V~~v~~sp~~~~llas~---------------s~D~~v~~w~v~~ 331 (344)
T 4gqb_B 295 SQAHRD-FVRDATWSPLNHSLLTTV---------------GWDHQVVHHVVPT 331 (344)
T ss_dssp ECCCSS-CEEEEEECSSSTTEEEEE---------------ETTSCEEEEECCC
T ss_pred ECCCCC-CEEEEEEECCCCEEEEEE---------------CCCCEEEEEECCC
T ss_conf 728899-778999917999699999---------------3799599998999
No 6
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=1.00 E-value=1 Score=254.24 Aligned_cols=272 Identities=16% Similarity=0.221 Sum_probs=235.6
Q ss_pred CCCEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEECC-CCEEEEEEE-CCC
Q ss_conf 122016667986899823766764347986445665445667778179998257620145788314-543699972-398
Q 000725 946 ERSCALFTPDGQYLVLLDSMKTPYCREGRSDCLCSTCTSHRLDENAVKIVKVKPGYVSVVAKLKTD-DCVQCILVC-EPK 1023 (1329)
Q Consensus 946 ersglqFTPDGQ~LvLlgsik~p~CR~~~~dC~Cs~C~~s~seDNtVKIv~V~~G~vsll~kL~ah-~sV~cIlVc-Dpn 1023 (1329)
..++++|+|||++|+ +++.|+.|+||+...|. .+.++.+| ..|.++.+. |.+
T Consensus 25 ~v~~~~~s~~~~~l~------------------------s~~~dg~i~iw~~~~~~--~~~~~~~h~~~v~~~~~~~~~~ 78 (312)
T 4ery_A 25 AVSSVKFSPNGEWLA------------------------SSSADKLIKIWGAYDGK--FEKTISGHKLGISDVAWSSDSN 78 (312)
T ss_dssp CEEEEEECTTSSEEE------------------------EEETTSCEEEEETTTCC--EEEEECCCSSCEEEEEECTTSS
T ss_pred CEEEEEECCCCCEEE------------------------EEECCCEEEEEECCCCC--CCHHHCCCCCCEEEEEECCCCC
T ss_conf 578999989999999------------------------96078809998677765--0001026778547999929999
Q ss_pred EEEEECCCCEEEEEECCCCCEEEEEEEEECCCCCCCCCEEEEEECCCCCCEEEECCCCCCEEEEECCCCCEEEEECCCCC
Q ss_conf 49995489819999525763277764120689975551168773179999267137874289987335523436304766
Q 000725 1024 HLIAVGESGKLHLWEMNSSWSAQVEECIIPINDCIYPCIVEMKRIPKCAPLVVGHNGFGEFGIWDISKRVLVSRFSAARA 1103 (1329)
Q Consensus 1024 hLVSaSdDGkL~IWDM~SgWsi~tee~Vi~~n~gv~p~I~elKrFpkss~lIITgSGDgtf~LWDIskg~liqtF~ahs~ 1103 (1329)
+|++++.||.|.+||+.++-.+.+.. +|...|..+ .|.+...++++++.|+++++||+..+.++..|.+|..
T Consensus 79 ~l~s~~~d~~i~vwd~~~~~~~~~~~-------~~~~~v~~~-~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~ 150 (312)
T 4ery_A 79 LLVSASDDKTLKIWDVSSGKCLKTLK-------GHSNYVFCC-NFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSD 150 (312)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEE-------CCSSCEEEE-EECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSS
T ss_pred EEEEECCCCEEEEEECCCCCEEEEEC-------CCCCCEEEE-EECCCCCEEEEEECCCCEEEEECCCCEEEEEECCCCC
T ss_conf 99999899979999999993889980-------789977999-9869999899993898299998889989878137888
Q ss_pred CEEE--ECCCC----CCCCCCCCCEEECCCHHHH--C-CCCCCCCCCCCCCEEECCCCCCCCEEEEEEECCCCCCHHHCC
Q ss_conf 5158--64566----4333467313777403343--0-233451002787234168988564178886215731011103
Q 000725 1104 SIYQ--FFPIN----LFSWQRNGSVSMDASLELT--N-TATTSLFSKHSEKSSFCPSVGEDSAIWLLVSTISDSDAQHNC 1174 (1329)
Q Consensus 1104 sV~s--fsPi~----s~S~d~~v~ifd~~svE~~--l-eatv~~fSgdvn~VsF~P~sGeD~AiwLLVST~Sdd~tl~Dl 1174 (1329)
.|.+ |+|++ +++.|+.+++|+..+.... + .....++.. +.|+| + +.+|++++.+..+++||+
T Consensus 151 ~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~----~~~~~----~-~~~l~~~~~d~~i~iwd~ 221 (312)
T 4ery_A 151 PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF----VKFSP----N-GKYILAATLDNTLKLWDY 221 (312)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEE----EEECT----T-SSEEEEEETTTEEEEEET
T ss_pred CEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCEEE----EEECC----C-CCEEEEECCCCEEEEEEC
T ss_conf 37799985899989998189819999799883115874367896689----99999----9-988999838985999977
Q ss_pred CC----CCCCCCCCCEEEEEEEECCCEECCCCCCCCCEEEECCCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCEEEE
Q ss_conf 34----65578986236877640340412799998730452078808950389909999835564453331015965999
Q 000725 1175 MS----RDCQKNPVRFWRLALLVKNRVILGSPLDPRASAIGASSGLGIIGTNDGLVYAWELSSGNKLGILHHFKGGTVSC 1250 (1329)
Q Consensus 1175 ra----~~~~gH~n~~wRLALl~K~siI~Gs~ldpra~afs~SG~~gfaGT~DGlVYmWDLstG~kL~tL~~Heg~rVSC 1250 (1329)
+. ..+.+|....+.+. +......+.++++|+.||.|++||+.+++.+..+.+|.+ .|.+
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~-~v~~ 284 (312)
T 4ery_A 222 SKGKCLKTYTGHKNEKYCIF----------------ANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTD-VVIS 284 (312)
T ss_dssp TTTEEEEEECSSCCSSSCCC----------------EEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSS-CEEE
T ss_pred CCCCEEEEEEECCCCEEEEE----------------EEEEECCCCEEEEECCCCEEEEEECCCCHHHHHHHCCCC-CEEE
T ss_conf 78837899984078408999----------------999807996999977989799998887424423131577-6798
Q ss_pred EEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEC
Q ss_conf 99648997328992489999854568988889828995518
Q 000725 1251 IATDDSGLQALAVAGDGPDGGRRQRDPRHGQNDHVRIWKMD 1291 (1329)
Q Consensus 1251 VA~dps~p~~iAvA~d~~d~~~r~~~~~~s~D~~VRiW~~~ 1291 (1329)
++.+|.++. +|+|+. +.|++||+|+.+
T Consensus 285 ~~~~p~~~~-l~s~~~-------------~~d~~i~~W~~d 311 (312)
T 4ery_A 285 TACHPTENI-IASAAL-------------ENDKTIKLWKSD 311 (312)
T ss_dssp EEECSSSSE-EEEEEC-------------TTTCCEEEEECC
T ss_pred EEECCCCCC-EEEEEC-------------CCCCCEEEECCC
T ss_conf 753576781-589972-------------688417971689
No 7
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=1.00 E-value=1 Score=250.05 Aligned_cols=269 Identities=10% Similarity=0.089 Sum_probs=234.3
Q ss_pred CCCEEEECCC----CCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEECC-CCEEEEEEE
Q ss_conf 1220166679----86899823766764347986445665445667778179998257620145788314-543699972
Q 000725 946 ERSCALFTPD----GQYLVLLDSMKTPYCREGRSDCLCSTCTSHRLDENAVKIVKVKPGYVSVVAKLKTD-DCVQCILVC 1020 (1329)
Q Consensus 946 ersglqFTPD----GQ~LvLlgsik~p~CR~~~~dC~Cs~C~~s~seDNtVKIv~V~~G~vsll~kL~ah-~sV~cIlVc 1020 (1329)
..++++|+|+ |++|+ +|+.|++||||++..+...+..+|.+| ..|.|+.++
T Consensus 34 ~V~~v~~~~~~~~~~~~l~------------------------tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~ 89 (321)
T 3ow8_A 34 AIWSVAWGTNKKENSETVV------------------------TGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDIS 89 (321)
T ss_dssp CEEEEEEC-------CEEE------------------------EEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEEC
T ss_pred CEEEEEEECCCCCCCCEEE------------------------EECCCCCEEEEECCCCCEEEEEEECCCCCCEEEEEEC
T ss_conf 6799998248888888899------------------------9849998999889899743666005677888999988
Q ss_pred -CCCEEEEECCCCEEEEEECCCCCEEEEEEEEECCCCCCCCCEEEEEECCCCCCEEEECCCCCCEEEEECCCCCEEEEEC
Q ss_conf -3984999548981999952576327776412068997555116877317999926713787428998733552343630
Q 000725 1021 -EPKHLIAVGESGKLHLWEMNSSWSAQVEECIIPINDCIYPCIVEMKRIPKCAPLVVGHNGFGEFGIWDISKRVLVSRFS 1099 (1329)
Q Consensus 1021 -DpnhLVSaSdDGkL~IWDM~SgWsi~tee~Vi~~n~gv~p~I~elKrFpkss~lIITgSGDgtf~LWDIskg~liqtF~ 1099 (1329)
+...+++++.||+|++||+.++-...... .+...+..+ .|.++...+++++.|+++.+||+..+....++.
T Consensus 90 ~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~-------~~~~~~~~~-~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~ 161 (321)
T 3ow8_A 90 HTLPIAASSSLDAHIRLWDLENGKQIKSID-------AGPVDAWTL-AFSPDSQYLATGTHVGKVNIFGVESGKKEYSLD 161 (321)
T ss_dssp SSSSEEEEEETTSEEEEEETTTTEEEEEEE-------CCTTCCCCE-EECTTSSEEEEECTTSEEEEEETTTCSEEEEEE
T ss_pred CCCCEEEEEECCCCEEEEECCCCCEEEEEE-------CCCCCEEEE-EECCCCCEEEEECCCCCEEEEECCCCCEEEEEC
T ss_conf 999989999379809999789997989993-------798567999-999999989998389919999867994667743
Q ss_pred CCCCCEEE--ECCCC----CCCCCCCCCEEECCCHHHH--CCCCCCCCCCCCCCEEECCCCCCCCEEEEEEECCCCCCHH
Q ss_conf 47665158--64566----4333467313777403343--0233451002787234168988564178886215731011
Q 000725 1100 AARASIYQ--FFPIN----LFSWQRNGSVSMDASLELT--NTATTSLFSKHSEKSSFCPSVGEDSAIWLLVSTISDSDAQ 1171 (1329)
Q Consensus 1100 ahs~sV~s--fsPi~----s~S~d~~v~ifd~~svE~~--leatv~~fSgdvn~VsF~P~sGeD~AiwLLVST~Sdd~tl 1171 (1329)
.|...|.+ |+|++ +++.|+.+++|+..++... +..+..++.. +.|+| | +.+|++++.+..+++
T Consensus 162 ~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~----l~~sp----d-~~~l~s~s~dg~i~i 232 (321)
T 3ow8_A 162 TRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRS----LTFSP----D-SQLLVTASDDGYIKI 232 (321)
T ss_dssp CSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCE----EEECT----T-SCEEEEECTTSCEEE
T ss_pred CCCCEEEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEEECCCCCCEEE----EEECC----C-CCEEEEECCCCEEEE
T ss_conf 89942999999899999999928983999999999099998025896018----99948----9-998999909980999
Q ss_pred HCCC----CCCCCCCCCCEEEEEEEECCCEECCCCCCCCCEEEECCCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCE
Q ss_conf 1033----465578986236877640340412799998730452078808950389909999835564453331015965
Q 000725 1172 HNCM----SRDCQKNPVRFWRLALLVKNRVILGSPLDPRASAIGASSGLGIIGTNDGLVYAWELSSGNKLGILHHFKGGT 1247 (1329)
Q Consensus 1172 ~Dlr----a~~~~gH~n~~wRLALl~K~siI~Gs~ldpra~afs~SG~~gfaGT~DGlVYmWDLstG~kL~tL~~Heg~r 1247 (1329)
||++ ...+.+|....+. ++|+++|.++++|+.|+.|++||+.+++.+.++.+|.+ .
T Consensus 233 wd~~~~~~~~~~~~h~~~v~~-------------------~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~-~ 292 (321)
T 3ow8_A 233 YDVQHANLAGTLSGHASWVLN-------------------VAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQD-Q 292 (321)
T ss_dssp EETTTCCEEEEECCCSSCEEE-------------------EEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSS-C
T ss_pred EECCCCCEEEEECCCCCCEEE-------------------EEECCCCCEEEEEECCCCEEEEECCCCEEEEEECCCCC-C
T ss_conf 878996325898688882689-------------------99979999899981898099994999888889837877-3
Q ss_pred EEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEC
Q ss_conf 99999648997328992489999854568988889828995518
Q 000725 1248 VSCIATDDSGLQALAVAGDGPDGGRRQRDPRHGQNDHVRIWKMD 1291 (1329)
Q Consensus 1248 VSCVA~dps~p~~iAvA~d~~d~~~r~~~~~~s~D~~VRiW~~~ 1291 (1329)
|.+++.+|.+.. ++++ +.|++||||..+
T Consensus 293 v~~v~~s~~g~~-l~s~---------------~~d~~i~vwd~p 320 (321)
T 3ow8_A 293 VWGVKYNGNGSK-IVSV---------------GDDQEIHIYDCP 320 (321)
T ss_dssp EEEEEECTTSSE-EEEE---------------ETTCCEEEEECC
T ss_pred EEEEEECCCCCE-EEEE---------------ECCCEEEEEECC
T ss_conf 899999899999-9997---------------589808999577
No 8
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=1.00 E-value=1 Score=249.93 Aligned_cols=275 Identities=12% Similarity=0.088 Sum_probs=220.1
Q ss_pred CCCEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCC------CCCEEEEEECCCCE--EEEEEEECC-CCEEE
Q ss_conf 1220166679868998237667643479864456654456677------78179998257620--145788314-54369
Q 000725 946 ERSCALFTPDGQYLVLLDSMKTPYCREGRSDCLCSTCTSHRLD------ENAVKIVKVKPGYV--SVVAKLKTD-DCVQC 1016 (1329)
Q Consensus 946 ersglqFTPDGQ~LvLlgsik~p~CR~~~~dC~Cs~C~~s~se------DNtVKIv~V~~G~v--sll~kL~ah-~sV~c 1016 (1329)
...+++|+|||++|+ +++. |.+|++|+...|.. .+.....+| +.|.|
T Consensus 44 ~V~~v~fSpDG~~la------------------------s~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~ 99 (357)
T 4g56_B 44 QIGAVRYRRDGALLL------------------------AASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTD 99 (357)
T ss_dssp EEEEEEECSSSCEEE------------------------EEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEE
T ss_pred CEEEEEECCCCCEEE------------------------EECCCCCCCCCCEEEEEECCCCCCCEEEECCCCCCCCCEEE
T ss_conf 889999989999999------------------------98289871326869997899987140585024788798799
Q ss_pred EEEECCCEEEEECCCCEEEEEECCCCCEEEEEEEEECCCCCCCCCEEEEEECCCCCCEEEECCCCCCEEEEECCCCCEEE
Q ss_conf 99723984999548981999952576327776412068997555116877317999926713787428998733552343
Q 000725 1017 ILVCEPKHLIAVGESGKLHLWEMNSSWSAQVEECIIPINDCIYPCIVEMKRIPKCAPLVVGHNGFGEFGIWDISKRVLVS 1096 (1329)
Q Consensus 1017 IlVcDpnhLVSaSdDGkL~IWDM~SgWsi~tee~Vi~~n~gv~p~I~elKrFpkss~lIITgSGDgtf~LWDIskg~liq 1096 (1329)
+.|.....+++++.||+|+|||+.++-......+ ...+|...|.++ .|.++..++++++.|+++++||+++++++.
T Consensus 100 ~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~---~~~~h~~~V~~v-~~spdg~~l~sgs~dg~v~iwd~~~~~~~~ 175 (357)
T 4g56_B 100 VAWVSEKGILVASDSGAVELWEILEKESLLVNKF---AKYEHDDIVKTL-SVFSDGTQAVSGGKDFSVKVWDLSQKAVLK 175 (357)
T ss_dssp EEEETTTEEEEEETTSCEEEC--------CCCCE---EECCCSSCEEEE-EECSSSSEEEEEETTSCEEEEETTTTEEEE
T ss_pred EEECCCCCEEEEECCCEEEEEECCCCCEEEEEEE---CCCCCCCCEEEE-EECCCCCEEEEEECCCEEEEEECCCCCEEE
T ss_conf 9996899899998999899934456640478742---137888988999-997998999999698939999899995999
Q ss_pred EECCCCCCEEE--ECCCC-----CCCCCCCCCEEECCCHHHHC----CCCCCCCCCCCCCEEECCCCCCCCEEEEEEECC
Q ss_conf 63047665158--64566-----43334673137774033430----233451002787234168988564178886215
Q 000725 1097 RFSAARASIYQ--FFPIN-----LFSWQRNGSVSMDASLELTN----TATTSLFSKHSEKSSFCPSVGEDSAIWLLVSTI 1165 (1329)
Q Consensus 1097 tF~ahs~sV~s--fsPi~-----s~S~d~~v~ifd~~svE~~l----eatv~~fSgdvn~VsF~P~sGeD~AiwLLVST~ 1165 (1329)
.|.+|...|.+ |+|++ +++.|+.+++|+..+.+... ..+...+. .+.|+| +-...|.+++.
T Consensus 176 ~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~----~v~~sp----~~~~~la~g~~ 247 (357)
T 4g56_B 176 SYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPT----SVTWHP----EKDDTFACGDE 247 (357)
T ss_dssp EECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEE----EEEECT----TSTTEEEEEES
T ss_pred EECCCCCCEEEEEECCCCCCEEEEECCCCCEEEEECCCCCEEEEEEECCCCCCCC----CHHHHH----CCCCEEEEEEC
T ss_conf 9827789788999836887226655057863887889996401233002334442----111121----35305998213
Q ss_pred CCCCHHHCCC----CCCCCCCCCCEEEEEEEECCCEECCCCCCCCCEEEECCC-CEEEEECCCCEEEEEECCCCCEEEEE
Q ss_conf 7310111033----465578986236877640340412799998730452078-80895038990999983556445333
Q 000725 1166 SDSDAQHNCM----SRDCQKNPVRFWRLALLVKNRVILGSPLDPRASAIGASS-GLGIIGTNDGLVYAWELSSGNKLGIL 1240 (1329)
Q Consensus 1166 Sdd~tl~Dlr----a~~~~gH~n~~wRLALl~K~siI~Gs~ldpra~afs~SG-~~gfaGT~DGlVYmWDLstG~kL~tL 1240 (1329)
+..+++||++ ...+.+|...++. ++|++.| +++++|+.|+.|++||+.+++.+..+
T Consensus 248 d~~i~~wd~~~~~~~~~~~~~~~~v~~-------------------l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~ 308 (357)
T 4g56_B 248 TGNVSLVNIKNPDSAQTSAVHSQNITG-------------------LAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL 308 (357)
T ss_dssp SSCEEEEESSCGGGCEEECCCSSCEEE-------------------EEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC
T ss_pred CCCEEEEECCCCCEEEEEECCCEEEEE-------------------EEECCCCCCEEEEEECCCEEEEEECCCCCEEEEC
T ss_conf 542068989999582899355313877-------------------9976899989999958997999989999586978
Q ss_pred ECCCCCEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECC
Q ss_conf 1015965999996489973289924899998545689888898289955189
Q 000725 1241 HHFKGGTVSCIATDDSGLQALAVAGDGPDGGRRQRDPRHGQNDHVRIWKMDP 1292 (1329)
Q Consensus 1241 ~~Heg~rVSCVA~dps~p~~iAvA~d~~d~~~r~~~~~~s~D~~VRiW~~~~ 1292 (1329)
+|.+ .|++|+.+|.....+|++ |.|++|++|..+.
T Consensus 309 -~H~~-~V~~vafsP~d~~~l~s~---------------s~Dg~v~iW~~~~ 343 (357)
T 4g56_B 309 -SHRD-FVTGVAWSPLDHSKFTTV---------------GWDHKVLHHHLPS 343 (357)
T ss_dssp -CCSS-CEEEEEECSSSTTEEEEE---------------ETTSCEEEEECC-
T ss_pred -CCCC-CEEEEEEECCCCCEEEEE---------------CCCCEEEEEECCC
T ss_conf -8999-889999958999999999---------------1899599997799
No 9
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=1.00 E-value=1 Score=246.56 Aligned_cols=270 Identities=13% Similarity=0.114 Sum_probs=228.7
Q ss_pred CCCCEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEECC-CCEEEEEEE-CC
Q ss_conf 1122016667986899823766764347986445665445667778179998257620145788314-543699972-39
Q 000725 945 LERSCALFTPDGQYLVLLDSMKTPYCREGRSDCLCSTCTSHRLDENAVKIVKVKPGYVSVVAKLKTD-DCVQCILVC-EP 1022 (1329)
Q Consensus 945 ~ersglqFTPDGQ~LvLlgsik~p~CR~~~~dC~Cs~C~~s~seDNtVKIv~V~~G~vsll~kL~ah-~sV~cIlVc-Dp 1022 (1329)
-..++++|+|||++|+ +++.|++||||++.+|. .+.++.+| ..|.++.+. +.
T Consensus 14 ~~V~~~~fsp~~~~l~------------------------s~~~dg~v~lWd~~~~~--~~~~~~~~~~~v~~~~~~~~~ 67 (304)
T 2ynn_A 14 DRVKGIDFHPTEPWVL------------------------TTLYSGRVELWNYETQV--EVRSIQVTETPVRAGKFIARK 67 (304)
T ss_dssp SCEEEEEECSSSSEEE------------------------EEETTSEEEEEETTTTE--EEEEEECCSSCEEEEEEEGGG
T ss_pred CCEEEEEECCCCCEEE------------------------EECCCCCEEEEECCCCC--EEEEEECCCCCEEEEEEECCC
T ss_conf 8568999899998799------------------------98279969998788882--667760567748899996899
Q ss_pred CEEEEECCCCEEEEEECCCCCEEEEEEEEECCCCCCCCCEEEEEECCCCCCEEEECCCCCCEEEEECCCC-CEEEEECCC
Q ss_conf 8499954898199995257632777641206899755511687731799992671378742899873355-234363047
Q 000725 1023 KHLIAVGESGKLHLWEMNSSWSAQVEECIIPINDCIYPCIVEMKRIPKCAPLVVGHNGFGEFGIWDISKR-VLVSRFSAA 1101 (1329)
Q Consensus 1023 nhLVSaSdDGkL~IWDM~SgWsi~tee~Vi~~n~gv~p~I~elKrFpkss~lIITgSGDgtf~LWDIskg-~liqtF~ah 1101 (1329)
++|++++.||+|++||+.++-....+. +|...|..+ .|.+...++++++.|+++++||++.+ .+.+.|.+|
T Consensus 68 ~~l~s~s~d~~i~vwd~~~~~~~~~~~-------~h~~~v~~~-~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h 139 (304)
T 2ynn_A 68 NWIIVGSDDFRIRVFNYNTGEKVVDFE-------AHPDYIRSI-AVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGH 139 (304)
T ss_dssp TEEEEEETTSEEEEEETTTCCEEEEEE-------CCSSCEEEE-EECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCC
T ss_pred CEEEEECCCCEEEEEECCCCCEEEEEE-------CCCCCEEEE-EECCCCCEEEEECCCCEEEEEECCCCCCHHHHHCCC
T ss_conf 989998899979999999996789980-------799808999-995999999998799819999899992231010566
Q ss_pred CCCEEE--ECCC-C----CCCCCCCCCEEECCCHHHHC---CCCCCCCCCCCCCEEECCCCCCCCEEEEEEECCCCCCHH
Q ss_conf 665158--6456-6----43334673137774033430---233451002787234168988564178886215731011
Q 000725 1102 RASIYQ--FFPI-N----LFSWQRNGSVSMDASLELTN---TATTSLFSKHSEKSSFCPSVGEDSAIWLLVSTISDSDAQ 1171 (1329)
Q Consensus 1102 s~sV~s--fsPi-~----s~S~d~~v~ifd~~svE~~l---eatv~~fSgdvn~VsF~P~sGeD~AiwLLVST~Sdd~tl 1171 (1329)
...|++ |+|. + +++.|+.+++|+.+...... ..+... ++.+.|.|. + + ..+|+.++.+..+++
T Consensus 140 ~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~----v~~~~~~~~-~-~-~~~l~s~s~D~~i~i 212 (304)
T 2ynn_A 140 EHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERG----VNYVDYYPL-P-D-KPYMITASDDLTIKI 212 (304)
T ss_dssp CSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTC----EEEEEECCS-T-T-CCEEEEEETTSEEEE
T ss_pred CCCEEEEEECCCCCCEEEEEECCCEEEEEECCCCCCCCEECCCCCCC----EEEEEEEEC-C-C-CCEEEEECCCCEEEE
T ss_conf 89579999888999989999189839999899997663321687475----778999986-9-9-999999869991999
Q ss_pred HCCC----CCCCCCCCCCEEEEEEEECCCEECCCCCCCCCEEEECCCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCE
Q ss_conf 1033----465578986236877640340412799998730452078808950389909999835564453331015965
Q 000725 1172 HNCM----SRDCQKNPVRFWRLALLVKNRVILGSPLDPRASAIGASSGLGIIGTNDGLVYAWELSSGNKLGILHHFKGGT 1247 (1329)
Q Consensus 1172 ~Dlr----a~~~~gH~n~~wRLALl~K~siI~Gs~ldpra~afs~SG~~gfaGT~DGlVYmWDLstG~kL~tL~~Heg~r 1247 (1329)
||++ ...+.+|....+. ++|.+.+.++++|+.||.|++||+.+++.+.++..|.+ +
T Consensus 213 Wd~~~~~~~~~~~~h~~~v~~-------------------~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~-~ 272 (304)
T 2ynn_A 213 WDYQTKSCVATLEGHMSNVSF-------------------AVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLE-R 272 (304)
T ss_dssp EETTTTEEEEEEECCSSCEEE-------------------EEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSS-S
T ss_pred EECCCCCCCEEECCCCCCEEE-------------------EEECCCCCEEEEECCCCEEEEEECCCCCEEEECCCCCC-C
T ss_conf 967898602464798888899-------------------99889999899993899599998998714564468986-0
Q ss_pred EEEEEECCCCCCE-EEEECCCCCCCCCCCCCCCCCCCCEEEEEEC
Q ss_conf 9999964899732-8992489999854568988889828995518
Q 000725 1248 VSCIATDDSGLQA-LAVAGDGPDGGRRQRDPRHGQNDHVRIWKMD 1291 (1329)
Q Consensus 1248 VSCVA~dps~p~~-iAvA~d~~d~~~r~~~~~~s~D~~VRiW~~~ 1291 (1329)
|+|++.+|.+... +|++ .|+.+.+|...
T Consensus 273 ~~~~~~~~~~~~~~~asg----------------~~~g~~~~~~~ 301 (304)
T 2ynn_A 273 SWCIATHPTGRKNYIASG----------------FDNGFTVLSLG 301 (304)
T ss_dssp EEEEEECTTCGGGCEEEE----------------ETTEEEEEECC
T ss_pred EEEEEECCCCCCEEEEEE----------------CCCCEEEEEEC
T ss_conf 899998789981699996----------------38946999804
No 10
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=1.00 E-value=1 Score=244.78 Aligned_cols=279 Identities=11% Similarity=0.168 Sum_probs=194.5
Q ss_pred CCEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEE-------CC-CCEEEEE
Q ss_conf 220166679868998237667643479864456654456677781799982576201457883-------14-5436999
Q 000725 947 RSCALFTPDGQYLVLLDSMKTPYCREGRSDCLCSTCTSHRLDENAVKIVKVKPGYVSVVAKLK-------TD-DCVQCIL 1018 (1329)
Q Consensus 947 rsglqFTPDGQ~LvLlgsik~p~CR~~~~dC~Cs~C~~s~seDNtVKIv~V~~G~vsll~kL~-------ah-~sV~cIl 1018 (1329)
..+++|+|||++|+ +++.|++||||++..|. .+.+|. +| +.|.++.
T Consensus 193 V~~v~fspdg~~la------------------------s~s~D~~i~lwd~~~g~--~~~~~~~~~~~~~~h~~~V~~v~ 246 (611)
T 1nr0_A 193 VHSVRYNPDGSLFA------------------------STGGDGTIVLYNGVDGT--KTGVFEDDSLKNVAHSGSVFGLT 246 (611)
T ss_dssp EEEEEECTTSSEEE------------------------EEETTSCEEEEETTTCC--EEEECBCTTSSSCSSSSCEEEEE
T ss_pred EEEEEECCCCCEEE------------------------EEECCCCEEEEECCCCC--EEEEECCCCCCCCCCCCCEEEEE
T ss_conf 69999979999899------------------------99899919998899982--86651366432356678789999
Q ss_pred EE-CCCEEEEECCCCEEEEEECCCCCEEEEEEE------------------------------------EECCCCCCCCC
Q ss_conf 72-398499954898199995257632777641------------------------------------20689975551
Q 000725 1019 VC-EPKHLIAVGESGKLHLWEMNSSWSAQVEEC------------------------------------IIPINDCIYPC 1061 (1329)
Q Consensus 1019 Vc-DpnhLVSaSdDGkL~IWDM~SgWsi~tee~------------------------------------Vi~~n~gv~p~ 1061 (1329)
|+ |.++|++++.||++++||+.++-...+... .+....+|...
T Consensus 247 ~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~ 326 (611)
T 1nr0_A 247 WSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKA 326 (611)
T ss_dssp ECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSC
T ss_pred ECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCCCEEEEEEECCCEEEEEECCCCEEEEECCCCCCCEEECCCCCC
T ss_conf 97999999999089809999688870134404788766406899973887999958996899968899744698378888
Q ss_pred EEEEEECCCCCCEEEECCCCCCEEEEECCCCCEEEEE-CCCCCCEEE--ECCCC---CCCCCCCCCEEECCCHHHHC---
Q ss_conf 1687731799992671378742899873355234363-047665158--64566---43334673137774033430---
Q 000725 1062 IVEMKRIPKCAPLVVGHNGFGEFGIWDISKRVLVSRF-SAARASIYQ--FFPIN---LFSWQRNGSVSMDASLELTN--- 1132 (1329)
Q Consensus 1062 I~elKrFpkss~lIITgSGDgtf~LWDIskg~liqtF-~ahs~sV~s--fsPi~---s~S~d~~v~ifd~~svE~~l--- 1132 (1329)
|..+ .|.++..++++++.|+++++||+.++.+...+ .+|...|.+ |+|.+ ++++|+.+++|+........
T Consensus 327 v~~l-~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~ 405 (611)
T 1nr0_A 327 ITAL-SSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKA 405 (611)
T ss_dssp EEEE-EECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSC
T ss_pred EEEE-EEECCCCEEEEEECCCCEEEEECCCCCEEEECCCCCCCEEEEEEECCCCCEEEEECCCCEEEEECCCCCCCCCCE
T ss_conf 8999-991899989999589849999788792563216677650789998789969999848966895468854356521
Q ss_pred -----C--CCCCCC----------------------------CCCCCCEEECCCCCCCCEEEEEEECCCCCCHHHCCCCC
Q ss_conf -----2--334510----------------------------02787234168988564178886215731011103346
Q 000725 1133 -----T--ATTSLF----------------------------SKHSEKSSFCPSVGEDSAIWLLVSTISDSDAQHNCMSR 1177 (1329)
Q Consensus 1133 -----e--atv~~f----------------------------Sgdvn~VsF~P~sGeD~AiwLLVST~Sdd~tl~Dlra~ 1177 (1329)
. .....| ...+..+.|+| | +.+|.+++.+..+++||+...
T Consensus 406 ~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~sp----d-g~~lasgs~D~~v~lwd~~~~ 480 (611)
T 1nr0_A 406 VANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSN----D-KQFVAVGGQDSKVHVYKLSGA 480 (611)
T ss_dssp CEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECT----T-SCEEEEEETTSEEEEEEEETT
T ss_pred EEEECCCCCCEEEEECCCCEEEEEECCEEEEEECCCEEEEECCCCCEEEEEEC----C-CCEEEEECCCCEEEEEECCCC
T ss_conf 20014899707998079969999967639998489434640688954999928----9-989999689973999994599
Q ss_pred CC-----CCCCCCEEEEEEEECCCEECCCCCCCCCEEEECCCCEEEEECCCCEEEEEECCC-CCEEEE-E-ECCCCCEEE
Q ss_conf 55-----789862368776403404127999987304520788089503899099998355-644533-3-101596599
Q 000725 1178 DC-----QKNPVRFWRLALLVKNRVILGSPLDPRASAIGASSGLGIIGTNDGLVYAWELSS-GNKLGI-L-HHFKGGTVS 1249 (1329)
Q Consensus 1178 ~~-----~gH~n~~wRLALl~K~siI~Gs~ldpra~afs~SG~~gfaGT~DGlVYmWDLst-G~kL~t-L-~~Heg~rVS 1249 (1329)
.. .+|....+ +++|+++|+++++|+.|+.|++||+.+ ++.+.+ + .+|.+ .|.
T Consensus 481 ~~~~~~~~~h~~~v~-------------------~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~-~V~ 540 (611)
T 1nr0_A 481 SVSEVKTIVHPAEIT-------------------SVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTA-KVA 540 (611)
T ss_dssp EEEEEEEEECSSCEE-------------------EEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSS-CEE
T ss_pred CEEEEECCCCCCCEE-------------------EEEECCCCCEEEEECCCCCEEEEECCCCCCEEEEEEEEECCC-CEE
T ss_conf 222410157788607-------------------999989999899994899899988577872232102640466-425
Q ss_pred EEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCC
Q ss_conf 99964899732899248999985456898888982899551898
Q 000725 1250 CIATDDSGLQALAVAGDGPDGGRRQRDPRHGQNDHVRIWKMDPN 1293 (1329)
Q Consensus 1250 CVA~dps~p~~iAvA~d~~d~~~r~~~~~~s~D~~VRiW~~~~~ 1293 (1329)
||+.+|.+.. +|++ |.|++||+|.++..
T Consensus 541 ~v~fspdg~~-lasg---------------s~D~~v~lW~~~~~ 568 (611)
T 1nr0_A 541 CVSWSPDNVR-LATG---------------SLDNSVIVWNMNKP 568 (611)
T ss_dssp EEEECTTSSE-EEEE---------------ETTSCEEEEETTCT
T ss_pred EEEECCCCCE-EEEE---------------ECCCCEEEEECCCC
T ss_conf 8998998997-9999---------------79972999978875
Done!