Query 000726
Match_columns 1329
No_of_seqs 465 out of 2675
Neff 4.2
Searched_HMMs 29240
Date Tue Mar 26 17:03:28 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000726.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_497-501//hhsearch_pdb/000726hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b9d_A Serine/threonine-protei 1.0 1 1 401.4 24.1 258 1038-1310 20-281 (350)
2 3omv_A RAF proto-oncogene seri 1.0 1 1 400.8 26.2 267 1034-1314 28-302 (307)
3 4aoj_A High affinity nerve gro 1.0 1 1 398.7 29.8 263 1034-1313 33-320 (329)
4 4fie_A Serine/threonine-protei 1.0 1 1 396.3 25.8 253 1041-1311 150-406 (423)
5 4asz_A BDNF/NT-3 growth factor 1.0 1 1 395.9 26.2 262 1036-1314 7-291 (299)
6 4fih_A Serine/threonine-protei 1.0 1 1 394.5 24.6 253 1041-1311 73-329 (346)
7 4ase_A Vascular endothelial gr 1.0 1 1 394.4 25.0 266 1035-1314 57-349 (353)
8 4g3f_A NF-kappa-beta-inducing 1.0 1 1 394.0 24.3 269 1040-1329 56-333 (336)
9 4gt4_A Tyrosine-protein kinase 1.0 1 1 393.8 26.8 260 1035-1310 19-304 (308)
10 4aw0_A HPDK1, 3-phosphoinositi 1.0 1 1 391.7 23.1 259 1039-1313 29-292 (311)
No 1
>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*
Probab=1.00 E-value=1 Score=401.43 Aligned_cols=258 Identities=23% Similarity=0.415 Sum_probs=223.8
Q ss_pred CCCCCCEEEEEEECCCCCEEEEEEEEC--CCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCC
Q ss_conf 135667159988401583899999997--920899997216667998478999999999999998469995526702111
Q 000726 1038 IIKNEDLEELKELGSGTFGTVYHGKWR--GTDVAIKRIKKSCFTGRSSEQERLTLEFWREAEILSKLHHPNVVAFYGVVQ 1115 (1329)
Q Consensus 1038 ~Is~eeYsllkvLGsGaFGtVYKAk~k--Gt~VAVKiIKks~~sd~s~edE~~~keFlREIeILkkLrHPNIVKLlGif~ 1115 (1329)
....++|++++.||+|+||.||++++. ++.||||++.+.... ......+.+|+.+|+.++|||||++++++.
T Consensus 20 f~sme~Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~------~~~~~~~~~E~~il~~l~HpnIV~~~~~~~ 93 (350)
T 4b9d_A 20 FQSMEKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMS------SKEREESRREVAVLANMKHPNIVQYRESFE 93 (350)
T ss_dssp CSCCCCEEEEEEC------CEEEEEETTTCCEEEEEEEECTTSC------HHHHHHHHHHHHHHHHCCCTTBCCEEEEEE
T ss_pred CCCCCCEEEEEEEECCCCEEEEEEEECCCCCEEEEEEEEHHHCC------HHHHHHHHHHHHHHHHCCCCCCCCEEEEEE
T ss_conf 78512558847970277939999998899989999998658789------799999999999998779989891999999
Q ss_pred CCCCCEEEEEEEECCCCCHHHHHHCCC-CCCCHHHHHHHHHHHHHHHHHHHHCCEEECCCCCCCEEECCCCCCCCCEEEE
Q ss_conf 599971899998212883135441013-4579999999999999999998979903047987515754689988808994
Q 000726 1116 DGPGGTLATVTEFMVNGSLRHVLLSKE-RHLDRRKRLIIAMDAAFGMEYLHSKNIVHFDLKCDNLLVNLKDPIRPICKVG 1194 (1329)
Q Consensus 1116 esseg~L~LVMEYieGGSL~dlL~~ke-k~LSe~qIlkIA~QIAsALaYLHskGIIHRDLKPsNILIDsdGni~~~VKLs 1194 (1329)
+.. .+|||||||++|+|.+++.... ..+++..++.|+.||+.||.|||+++|+||||||+|||++.++. +||+
T Consensus 94 ~~~--~~yiVmEy~~gg~L~~~i~~~~~~~~~e~~~~~~~~qi~~aL~ylH~~~IiHRDlKp~NILl~~~g~----vKl~ 167 (350)
T 4b9d_A 94 ENG--SLYIVMDYCEGGDLFKRINAQKGVLFQEDQILDWFVQICLALKHVHDRKILHRDIKSQNIFLTKDGT----VQLG 167 (350)
T ss_dssp ETT--EEEEEEECCTTCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHTTCEETTCCGGGEEECTTCC----EEEC
T ss_pred ECC--EEEEEEECCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCEEECCCCHHHEEECCCCC----EEEC
T ss_conf 899--9999994889983999999738999978999999999999999999899151359789979878999----8976
Q ss_pred ECCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCC
Q ss_conf 24775224686-32368779876447211136889999056899999999999909999989885689997872589999
Q 000726 1195 DFGLSKIKRNT-LVTGGVRGTLPWMAPELLNGSSSKVSEKVDVFSFGIVLWEILTGEEPYANMHYGAIIGGIVNNTLRPP 1273 (1329)
Q Consensus 1195 DFGLAkli~~~-~~ss~v~GT~~YlAPEvL~Gs~~~~SeKSDVWSLGVLLyELLTGk~PFs~~~~~eilqqIve~~lrle 1273 (1329)
|||+|+..... ......+||+.|||||++.+ ..++.++|||||||+||||++|+.||......+.+..+..... ++
T Consensus 168 DFGla~~~~~~~~~~~~~~GT~~YmAPE~l~~--~~y~~~~DiwSlGvilyemltG~~PF~~~~~~~~~~~i~~~~~-~~ 244 (350)
T 4b9d_A 168 DFGIARVLNSTVELARACIGTPYYLSPEICEN--KPYNNKSDIWALGCVLYELCTLKHAFEAGSMKNLVLKIISGSF-PP 244 (350)
T ss_dssp STTEESCCCHHHHHHHHHHSCCTTCCHHHHTT--CCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHTCC-CC
T ss_pred CCCCCEEECCCCCCCCCCCCCCCCCCHHHHCC--CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCC-CC
T ss_conf 46521440688541014578836039999879--9989599999999999999978799899699999999980899-99
Q ss_pred CCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
Q ss_conf 9998929999999992158999998999999999999
Q 000726 1274 VPGFCDSEWRLLMEQCWAPDPVVRPSFTEIARRLRVM 1310 (1329)
Q Consensus 1274 ip~~vSeeL~dLIkkCLq~DPeERPSaeELLk~Le~L 1310 (1329)
.+..++.++.+||.+||+.||.+|||+.++++|.|..
T Consensus 245 ~~~~~s~~~~~li~~~L~~dP~~R~s~~e~l~hp~~~ 281 (350)
T 4b9d_A 245 VSLHYSYDLRSLVSQLFKRNPRDRPSVNSILEKGFIA 281 (350)
T ss_dssp CCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHTSHHHH
T ss_pred CCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHCCHHHH
T ss_conf 9755799999999998558966790899996399761
No 2
>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=400.79 Aligned_cols=267 Identities=32% Similarity=0.521 Sum_probs=224.4
Q ss_pred CCCCCCCCCCEEEEEEECCCCCEEEEEEEECCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 31101356671599884015838999999979208999972166679984789999999999999984699955267021
Q 000726 1034 STLQIIKNEDLEELKELGSGTFGTVYHGKWRGTDVAIKRIKKSCFTGRSSEQERLTLEFWREAEILSKLHHPNVVAFYGV 1113 (1329)
Q Consensus 1034 s~l~~Is~eeYsllkvLGsGaFGtVYKAk~kGt~VAVKiIKks~~sd~s~edE~~~keFlREIeILkkLrHPNIVKLlGi 1113 (1329)
...|.+..+++++.++||+|+||.||+|++++ .||||+++.... .......|.+|+.++++++|||||+++++
T Consensus 28 ~~~Wei~~~~l~l~~~iG~G~fG~Vy~~~~~~-~vAvK~~~~~~~------~~~~~~~f~~E~~il~~l~HpNIV~l~g~ 100 (307)
T 3omv_A 28 SYYWEIEASEVMLSTRIGSGSFGTVYKGKWHG-DVAVKILKVVDP------TPEQFQAFRNEVAVLRKTRHVNILLFMGY 100 (307)
T ss_dssp -CCCBCCTTSCCEEEECCCCSSSEEEEEESSS-EEEEEECCCSSC------CHHHHHHHHHHHHHHTTCCCTTBCCEEEE
T ss_pred CCCCEECHHHEEEEEEEEECCCCEEEEEEECC-CEEEEEEEECCC------CHHHHHHHHHHHHHHHHCCCCCEEEEEEE
T ss_conf 86708747994984498208886899999899-689999972689------99999999999999985899887469999
Q ss_pred CCCCCCCEEEEEEEECCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCEEECCCCCCCEEECCCCCCCCCEEE
Q ss_conf 11599971899998212883135441013457999999999999999999897990304798751575468998880899
Q 000726 1114 VQDGPGGTLATVTEFMVNGSLRHVLLSKERHLDRRKRLIIAMDAAFGMEYLHSKNIVHFDLKCDNLLVNLKDPIRPICKV 1193 (1329)
Q Consensus 1114 f~esseg~L~LVMEYieGGSL~dlL~~kek~LSe~qIlkIA~QIAsALaYLHskGIIHRDLKPsNILIDsdGni~~~VKL 1193 (1329)
+.+. .++||||||++|+|.+++......+++.+++.|+.||+.||.|||+++|+||||||+|||++.++ .+||
T Consensus 101 ~~~~---~~~iVmEy~~gGsL~~~l~~~~~~l~~~~~~~i~~qia~gL~yLH~~~IiHRDlKp~NILl~~~~----~~Ki 173 (307)
T 3omv_A 101 MTKD---NLAIVTQWCEGSSLYKHLHVQETKFQMFQLIDIARQTAQGMDYLHAKNIIHRDMKSNNIFLHEGL----TVKI 173 (307)
T ss_dssp ECSS---SCEEEEECCSSCBHHHHHHTSCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCSCCCSSSEEEETTE----EEEE
T ss_pred EECC---EEEEEEECCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHEEECCCC----CEEE
T ss_conf 9789---58999974899878898752489999999999999999999999779952785578997888999----0899
Q ss_pred EECCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCC-CCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCC
Q ss_conf 42477522468---6323687798764472111368-8999905689999999999990999998988568999787258
Q 000726 1194 GDFGLSKIKRN---TLVTGGVRGTLPWMAPELLNGS-SSKVSEKVDVFSFGIVLWEILTGEEPYANMHYGAIIGGIVNNT 1269 (1329)
Q Consensus 1194 sDFGLAkli~~---~~~ss~v~GT~~YlAPEvL~Gs-~~~~SeKSDVWSLGVLLyELLTGk~PFs~~~~~eilqqIve~~ 1269 (1329)
+|||+|+.... .......+||+.|||||++.+. ...++.++|||||||+||||+||+.||...........++...
T Consensus 174 ~DFGla~~~~~~~~~~~~~~~~GT~~ymAPE~l~~~~~~~y~~ksDVwS~Gvvl~Elltg~~Pf~~~~~~~~~~~~~~~~ 253 (307)
T 3omv_A 174 GDFGLATVKSRWSGSQQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHINNRDQIIFMVGRG 253 (307)
T ss_dssp CCCSSCBC------------CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCHHHHHHHHHTT
T ss_pred EECCCCEECCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCC
T ss_conf 44157542466776403156446877249878614689987868775728999999997889989999699999999658
Q ss_pred CCC----CCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 999----999989299999999921589999989999999999999971
Q 000726 1270 LRP----PVPGFCDSEWRLLMEQCWAPDPVVRPSFTEIARRLRVMSAAC 1314 (1329)
Q Consensus 1270 lrl----eip~~vSeeL~dLIkkCLq~DPeERPSaeELLk~Le~L~sa~ 1314 (1329)
... ..+..++..+.+|+.+||+.+|.+||||.+++++|+.+....
T Consensus 254 ~~~p~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~ei~~~Le~l~~~l 302 (307)
T 3omv_A 254 YASPDLSKLYKNCPKAMKRLVADCVKKVKEERPLFPQILSSIELLQHSL 302 (307)
T ss_dssp CCCCCSTTSCTTSCHHHHHHHHHHTCSSSTTSCCHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHCCC
T ss_conf 8888720035445699999999975779768909899999999974507
No 3
>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}
Probab=1.00 E-value=1 Score=398.73 Aligned_cols=263 Identities=35% Similarity=0.569 Sum_probs=225.9
Q ss_pred CCCCCCCCCCEEEEEEECCCCCEEEEEEEEC-------CCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 3110135667159988401583899999997-------920899997216667998478999999999999998469995
Q 000726 1034 STLQIIKNEDLEELKELGSGTFGTVYHGKWR-------GTDVAIKRIKKSCFTGRSSEQERLTLEFWREAEILSKLHHPN 1106 (1329)
Q Consensus 1034 s~l~~Is~eeYsllkvLGsGaFGtVYKAk~k-------Gt~VAVKiIKks~~sd~s~edE~~~keFlREIeILkkLrHPN 1106 (1329)
.....+..++|.+.++||+|+||.||+|+++ +..||||+++.. .+....+|.+|+.+|++++|||
T Consensus 33 ~~~~~i~~~d~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~--------~~~~~~~f~~E~~il~~l~Hpn 104 (329)
T 4aoj_A 33 ACVHHIKRRDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEA--------SESARQDFQREAELLTMLQHQH 104 (329)
T ss_dssp CCSCBCCGGGEEEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCC--------SHHHHHHHHHHHHHHTTCCCTT
T ss_pred HHHCCCCHHHEEEEEEECCCCCCEEEEEEECCCCCCCCCEEEEEEEECCC--------CHHHHHHHHHHHHHHHHCCCCC
T ss_conf 55330678992887797147784899899878665778969999997757--------9799999999999998589989
Q ss_pred EEEEECCCCCCCCCEEEEEEEECCCCCHHHHHHCCC--------------CCCCHHHHHHHHHHHHHHHHHHHHCCEEEC
Q ss_conf 526702111599971899998212883135441013--------------457999999999999999999897990304
Q 000726 1107 VVAFYGVVQDGPGGTLATVTEFMVNGSLRHVLLSKE--------------RHLDRRKRLIIAMDAAFGMEYLHSKNIVHF 1172 (1329)
Q Consensus 1107 IVKLlGif~esseg~L~LVMEYieGGSL~dlL~~ke--------------k~LSe~qIlkIA~QIAsALaYLHskGIIHR 1172 (1329)
||+++++|.+.. .++||||||++|+|.+++.... .++++.+++.|+.||+.||.|||+++|+||
T Consensus 105 IV~l~g~~~~~~--~~~lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~iiHR 182 (329)
T 4aoj_A 105 IVRFFGVCTEGR--PLLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAGLHFVHR 182 (329)
T ss_dssp BCCEEEEECSSS--SEEEEEECCTTCBHHHHHHTSSCC-----------CCSCCHHHHHHHHHHHHHHHHHHHHTTCCCS
T ss_pred CCCEEEEEEECC--EEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEECC
T ss_conf 996989999899--899999827999399999860754100122112457889999999999999999999840884226
Q ss_pred CCCCCCEEECCCCCCCCCEEEEECCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH-
Q ss_conf 798751575468998880899424775224686---3236877987644721113688999905689999999999990-
Q 000726 1173 DLKCDNLLVNLKDPIRPICKVGDFGLSKIKRNT---LVTGGVRGTLPWMAPELLNGSSSKVSEKVDVFSFGIVLWEILT- 1248 (1329)
Q Consensus 1173 DLKPsNILIDsdGni~~~VKLsDFGLAkli~~~---~~ss~v~GT~~YlAPEvL~Gs~~~~SeKSDVWSLGVLLyELLT- 1248 (1329)
||||+|||++.++ .+||+|||+++..... .......||+.|||||++. ...++.++|||||||+||||+|
T Consensus 183 DLKp~NILl~~~~----~~Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~--~~~~~~~sDvwS~Gvvl~Ellt~ 256 (329)
T 4aoj_A 183 DLATRNCLVGQGL----VVKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESIL--YRKFTTESDVWSFGVVLWEIFTY 256 (329)
T ss_dssp CCCGGGEEEETTT----EEEECCCC----------------CCCCGGGCCHHHHT--TCCCCHHHHHHHHHHHHHHHHTT
T ss_pred CCCHHHEEECCCC----CEEECCCCCCEECCCCCCCEECCCCCCCCCCCCHHHHC--CCCCCCCCCCCCHHHHHHHHHCC
T ss_conf 6667648988999----68976660333656787530047645565665826544--79999663001057899999828
Q ss_pred CCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 99999898856899978725899999998929999999992158999998999999999999997
Q 000726 1249 GEEPYANMHYGAIIGGIVNNTLRPPVPGFCDSEWRLLMEQCWAPDPVVRPSFTEIARRLRVMSAA 1313 (1329)
Q Consensus 1249 Gk~PFs~~~~~eilqqIve~~lrleip~~vSeeL~dLIkkCLq~DPeERPSaeELLk~Le~L~sa 1313 (1329)
|+.||......+.+..+.. ..+++.|..+++.+.+||.+||+.||.+||||.+|+++|+.+...
T Consensus 257 G~~Pf~~~~~~~~~~~i~~-g~~~~~p~~~~~~~~~li~~cl~~dP~~RPs~~ei~~~L~~l~~~ 320 (329)
T 4aoj_A 257 GKQPWYQLSNTEAIDCITQ-GRELERPRACPPEVYAIMRGCWQREPQQRHSIKDVHARLQALAQA 320 (329)
T ss_dssp SCCTTCSSCHHHHHHHHHH-TCCCCCCTTCCHHHHHHHHHHCCSSTTTSCCHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCHHHHHHHHHC-CCCCCCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHC
T ss_conf 9999999899999999980-898998644639999999997475965792999999999987458
No 4
>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}
Probab=1.00 E-value=1 Score=396.25 Aligned_cols=253 Identities=24% Similarity=0.387 Sum_probs=218.6
Q ss_pred CCCEEEEEEECCCCCEEEEEEEEC--CCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCC
Q ss_conf 667159988401583899999997--920899997216667998478999999999999998469995526702111599
Q 000726 1041 NEDLEELKELGSGTFGTVYHGKWR--GTDVAIKRIKKSCFTGRSSEQERLTLEFWREAEILSKLHHPNVVAFYGVVQDGP 1118 (1329)
Q Consensus 1041 ~eeYsllkvLGsGaFGtVYKAk~k--Gt~VAVKiIKks~~sd~s~edE~~~keFlREIeILkkLrHPNIVKLlGif~ess 1118 (1329)
.+.|++.+.||+|+||.||+|+++ |+.||||++....... ...+.+|+.+|+.++|||||++++++.+..
T Consensus 150 ~~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~--------~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~ 221 (423)
T 4fie_A 150 RSYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQR--------RELLFNEVVIMRDYQHENVVEMYNSYLVGD 221 (423)
T ss_dssp GGTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESTTCSS--------GGGHHHHHHHHHHCCCTTBCCEEEEEEETT
T ss_pred HHHCEEEEEECCCCCCEEEEEEECCCCCEEEEEEEECCCHHH--------HHHHHHHHHHHHHCCCCCCCCEEEEEEECC
T ss_conf 684386169624818489999999999899999986255468--------999999999998579989871689999899
Q ss_pred CCEEEEEEEECCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCEEECCCCCCCEEECCCCCCCCCEEEEECCC
Q ss_conf 97189999821288313544101345799999999999999999989799030479875157546899888089942477
Q 000726 1119 GGTLATVTEFMVNGSLRHVLLSKERHLDRRKRLIIAMDAAFGMEYLHSKNIVHFDLKCDNLLVNLKDPIRPICKVGDFGL 1198 (1329)
Q Consensus 1119 eg~L~LVMEYieGGSL~dlL~~kek~LSe~qIlkIA~QIAsALaYLHskGIIHRDLKPsNILIDsdGni~~~VKLsDFGL 1198 (1329)
.+|||||||++|+|.+++. ...+++.++..|+.||+.||.|||+++|+||||||+|||++.++. +||+|||+
T Consensus 222 --~~~iVmEy~~gG~L~~~i~--~~~l~e~~~~~~~~qil~aL~ylH~~~IiHRDiKp~NILl~~~g~----vKl~DFGl 293 (423)
T 4fie_A 222 --ELWVVMEFLEGGALTDIVT--HTRMNEEQIAAVCLAVLQALSVLHAQGVIHRDIKSDSILLTHDGR----VKLSDFGF 293 (423)
T ss_dssp --EEEEEEECCTTEEHHHHHH--HSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSTTTEEECTTCC----EEECCCTT
T ss_pred --EEEEEEECCCCCCHHHHHH--CCCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCHHHEEECCCCC----EEEECCCC
T ss_conf --9999996989982898876--169899999999999999999999889044657877789858999----89803726
Q ss_pred CCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCC-CCCCCC
Q ss_conf 522468-632368779876447211136889999056899999999999909999989885689997872589-999999
Q 000726 1199 SKIKRN-TLVTGGVRGTLPWMAPELLNGSSSKVSEKVDVFSFGIVLWEILTGEEPYANMHYGAIIGGIVNNTL-RPPVPG 1276 (1329)
Q Consensus 1199 Akli~~-~~~ss~v~GT~~YlAPEvL~Gs~~~~SeKSDVWSLGVLLyELLTGk~PFs~~~~~eilqqIve~~l-rleip~ 1276 (1329)
|+.... .......+||+.|||||++.+ ..|+.++|||||||++|||++|+.||.+......+..+..... ......
T Consensus 294 a~~~~~~~~~~~~~~GTp~YmAPEvl~~--~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~~~~~i~~~~~~~~~~~~ 371 (423)
T 4fie_A 294 CAQVSKEVPRRKSLVGTPYWMAPELISR--LPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRDNLPPRLKNLH 371 (423)
T ss_dssp CEECCSSCCCBCCCEECTTTCCHHHHTT--CCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSCCCCCSCTT
T ss_pred CEECCCCCCCCCCCCCCCCCCCHHHHCC--CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCC
T ss_conf 5477788764346664747279999779--99996899999999999999787998986999999999727998876501
Q ss_pred CCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 89299999999921589999989999999999999
Q 000726 1277 FCDSEWRLLMEQCWAPDPVVRPSFTEIARRLRVMS 1311 (1329)
Q Consensus 1277 ~vSeeL~dLIkkCLq~DPeERPSaeELLk~Le~L~ 1311 (1329)
.+++.+.+||.+||+.||.+|||+.|+++|.|...
T Consensus 372 ~~s~~~~dli~~~L~~dP~~R~ta~ell~Hp~~~~ 406 (423)
T 4fie_A 372 KVSPSLKGFLDRLLVRDPAQRATAAELLKHPFLAK 406 (423)
T ss_dssp SSCHHHHHHHHHHSCSSTTTSCCHHHHTTCGGGGG
T ss_pred CCCHHHHHHHHHHCCCCHHHCCCHHHHHCCHHHCC
T ss_conf 29999999999986789568909999960987568
No 5
>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*
Probab=1.00 E-value=1 Score=395.88 Aligned_cols=262 Identities=35% Similarity=0.570 Sum_probs=225.3
Q ss_pred CCCCCCCCEEEEEEECCCCCEEEEEEEEC-------CCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEE
Q ss_conf 10135667159988401583899999997-------92089999721666799847899999999999999846999552
Q 000726 1036 LQIIKNEDLEELKELGSGTFGTVYHGKWR-------GTDVAIKRIKKSCFTGRSSEQERLTLEFWREAEILSKLHHPNVV 1108 (1329)
Q Consensus 1036 l~~Is~eeYsllkvLGsGaFGtVYKAk~k-------Gt~VAVKiIKks~~sd~s~edE~~~keFlREIeILkkLrHPNIV 1108 (1329)
++.|..++|.+.+.||+|+||.||+|++. +..||||+++.. ......+|.+|+.+|++++|||||
T Consensus 7 ~~~I~r~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~--------~~~~~~~f~~E~~il~~l~HpnIV 78 (299)
T 4asz_A 7 VQHIKRHNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDA--------SDNARKDFHREAELLTNLQHEHIV 78 (299)
T ss_dssp CCBCCGGGEEEEEEEEC--CCCEEEEEECSCC----CEEEEEEEECSC--------CHHHHHHHHHHHHHHTTCCCTTBC
T ss_pred HCCCCHHHEEEEEEEEECCCCEEEEEEECCCCCCCCCEEEEEEEECCC--------CHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 441488892982498207882999999877666778879999996777--------858999999999999858998886
Q ss_pred EEECCCCCCCCCEEEEEEEECCCCCHHHHHHCCC------------CCCCHHHHHHHHHHHHHHHHHHHHCCEEECCCCC
Q ss_conf 6702111599971899998212883135441013------------4579999999999999999998979903047987
Q 000726 1109 AFYGVVQDGPGGTLATVTEFMVNGSLRHVLLSKE------------RHLDRRKRLIIAMDAAFGMEYLHSKNIVHFDLKC 1176 (1329)
Q Consensus 1109 KLlGif~esseg~L~LVMEYieGGSL~dlL~~ke------------k~LSe~qIlkIA~QIAsALaYLHskGIIHRDLKP 1176 (1329)
+++++|.+.. .+++|||||++|+|.+++.... ..+++.+++.|+.||+.||.|||+++|+||||||
T Consensus 79 ~l~g~~~~~~--~~~lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~iiHRDlKp 156 (299)
T 4asz_A 79 KFYGVCVEGD--PLIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLASQHFVHRDLAT 156 (299)
T ss_dssp CEEEEECSSS--SEEEEEECCTTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSG
T ss_pred CEEEEEEECC--EEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCH
T ss_conf 2879995699--89999985899968999986086421112357778899999999999999999999759904676577
Q ss_pred CCEEECCCCCCCCCEEEEECCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH-CCCC
Q ss_conf 51575468998880899424775224686---3236877987644721113688999905689999999999990-9999
Q 000726 1177 DNLLVNLKDPIRPICKVGDFGLSKIKRNT---LVTGGVRGTLPWMAPELLNGSSSKVSEKVDVFSFGIVLWEILT-GEEP 1252 (1329)
Q Consensus 1177 sNILIDsdGni~~~VKLsDFGLAkli~~~---~~ss~v~GT~~YlAPEvL~Gs~~~~SeKSDVWSLGVLLyELLT-Gk~P 1252 (1329)
+|||++.++. +||+|||+|+..... .......||+.|||||++. ...++.++|||||||+||||+| |+.|
T Consensus 157 ~NILl~~~~~----~Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~--~~~~~~k~DVwS~Gvvl~Ellt~G~~P 230 (299)
T 4asz_A 157 RNCLVGENLL----VKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIM--YRKFTTESDVWSLGVVLWEIFTYGKQP 230 (299)
T ss_dssp GGEEECGGGC----EEECCCSCHHHHTGGGCEEETTTEEECGGGCCHHHHH--HCCCCHHHHHHHHHHHHHHHHTTTCCT
T ss_pred HHEEECCCCC----EEECCCCCCEECCCCCCEEECCCEECCHHHCCHHHHC--CCCCCCHHHHHHHHHHHHHHHCCCCCC
T ss_conf 6389879986----8988730010067887416647513470103889870--799970366778899999998089999
Q ss_pred CCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 98988568999787258999999989299999999921589999989999999999999971
Q 000726 1253 YANMHYGAIIGGIVNNTLRPPVPGFCDSEWRLLMEQCWAPDPVVRPSFTEIARRLRVMSAAC 1314 (1329)
Q Consensus 1253 Fs~~~~~eilqqIve~~lrleip~~vSeeL~dLIkkCLq~DPeERPSaeELLk~Le~L~sa~ 1314 (1329)
|......+....+... .+++.|..++..+.+||.+||+.||.+|||+.+++..|+.+....
T Consensus 231 f~~~~~~~~~~~i~~~-~~~~~p~~~~~~~~~li~~cl~~dP~~RPs~~~i~~~L~~~~~~~ 291 (299)
T 4asz_A 231 WYQLSNNEVIECITQG-RVLQRPRTCPQEVYELMLGCWQREPHMRKNIKGIHTLLQNLAKAS 291 (299)
T ss_dssp TTTSCHHHHHHHHHHT-CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHCC-CCCCCCCCCHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHCC
T ss_conf 9998999999999808-988997414399999999976879668929999999998777639
No 6
>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*
Probab=1.00 E-value=1 Score=394.50 Aligned_cols=253 Identities=24% Similarity=0.386 Sum_probs=218.1
Q ss_pred CCCEEEEEEECCCCCEEEEEEEEC--CCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCC
Q ss_conf 667159988401583899999997--920899997216667998478999999999999998469995526702111599
Q 000726 1041 NEDLEELKELGSGTFGTVYHGKWR--GTDVAIKRIKKSCFTGRSSEQERLTLEFWREAEILSKLHHPNVVAFYGVVQDGP 1118 (1329)
Q Consensus 1041 ~eeYsllkvLGsGaFGtVYKAk~k--Gt~VAVKiIKks~~sd~s~edE~~~keFlREIeILkkLrHPNIVKLlGif~ess 1118 (1329)
.+.|++.+.||+|+||.||+|+++ |+.||||++....... ...+.+|+.+|+.++|||||++++++.+..
T Consensus 73 ~~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~--------~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~ 144 (346)
T 4fih_A 73 RSYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQR--------RELLFNEVVIMRDYQHENVVEMYNSYLVGD 144 (346)
T ss_dssp GGTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCSS--------GGGGHHHHHHHHHCCCTTBCCEEEEEEETT
T ss_pred HHHCEEEEEEECCCCEEEEEEEECCCCCEEEEEEEECCCHHH--------HHHHHHHHHHHHHCCCCCCCCEEEEEEECC
T ss_conf 575387079602728299999998999899999985276568--------999999999998679989991999999899
Q ss_pred CCEEEEEEEECCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCEEECCCCCCCEEECCCCCCCCCEEEEECCC
Q ss_conf 97189999821288313544101345799999999999999999989799030479875157546899888089942477
Q 000726 1119 GGTLATVTEFMVNGSLRHVLLSKERHLDRRKRLIIAMDAAFGMEYLHSKNIVHFDLKCDNLLVNLKDPIRPICKVGDFGL 1198 (1329)
Q Consensus 1119 eg~L~LVMEYieGGSL~dlL~~kek~LSe~qIlkIA~QIAsALaYLHskGIIHRDLKPsNILIDsdGni~~~VKLsDFGL 1198 (1329)
.+|||||||++|+|.+++.. ..+++..+..++.||+.||.|||+++|+||||||+|||++.++. +||+|||+
T Consensus 145 --~~~ivmEy~~gg~L~~~l~~--~~l~e~~~~~~~~qi~~aL~ylH~~~IiHRDlKp~NILl~~~g~----vKl~DFGl 216 (346)
T 4fih_A 145 --ELWVVMEFLEGGALTDIVTH--TRMNEEQIAAVCLAVLQALSVLHAQGVIHRDIKSDSILLTHDGR----VKLSDFGF 216 (346)
T ss_dssp --EEEEEECCCTTEEHHHHHHH--SCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTCC----EEECCCTT
T ss_pred --EEEEEEECCCCCCHHHHHHC--CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHEEECCCCC----EEEECCCC
T ss_conf --99999969899808999871--89899999999999999999999888355627889978879998----89902757
Q ss_pred CCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCC-CCCCCC
Q ss_conf 522468-632368779876447211136889999056899999999999909999989885689997872589-999999
Q 000726 1199 SKIKRN-TLVTGGVRGTLPWMAPELLNGSSSKVSEKVDVFSFGIVLWEILTGEEPYANMHYGAIIGGIVNNTL-RPPVPG 1276 (1329)
Q Consensus 1199 Akli~~-~~~ss~v~GT~~YlAPEvL~Gs~~~~SeKSDVWSLGVLLyELLTGk~PFs~~~~~eilqqIve~~l-rleip~ 1276 (1329)
|+.... .......+||+.|||||++.+ ..++.++|||||||++|||++|++||.+......+..+..... ..+.+.
T Consensus 217 a~~~~~~~~~~~~~~GTp~YmAPEvl~~--~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~~~~~i~~~~~~~~~~~~ 294 (346)
T 4fih_A 217 CAQVSKEVPRRKSLVGTPYWMAPELISR--LPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRDNLPPRLKNLH 294 (346)
T ss_dssp CEECCSSSCCBCCCCSCGGGCCHHHHTT--CCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSSCCCCSCGG
T ss_pred CEECCCCCCCCCCCCCCCCCCCHHHHCC--CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCC
T ss_conf 5366788775346562758279999779--99996899999999999999787998985999999999717999887502
Q ss_pred CCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 89299999999921589999989999999999999
Q 000726 1277 FCDSEWRLLMEQCWAPDPVVRPSFTEIARRLRVMS 1311 (1329)
Q Consensus 1277 ~vSeeL~dLIkkCLq~DPeERPSaeELLk~Le~L~ 1311 (1329)
.+++++.+||.+||+.||.+|||+.|+++|.|...
T Consensus 295 ~~s~~~~dli~~~L~~dP~~R~ta~e~l~Hp~~~~ 329 (346)
T 4fih_A 295 KVSPSLKGFLDRLLVRDPAQRATAAELLKHPFLAK 329 (346)
T ss_dssp GSCHHHHHHHHHHSCSSTTTSCCHHHHTTCGGGGG
T ss_pred CCCHHHHHHHHHHCCCCHHHCCCHHHHHCCHHHCC
T ss_conf 29999999999986799568909999960986568
No 7
>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*
Probab=1.00 E-value=1 Score=394.40 Aligned_cols=266 Identities=31% Similarity=0.501 Sum_probs=225.9
Q ss_pred CCCCCCCCCEEEEEEECCCCCEEEEEEEECC-------CEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCC-CC
Q ss_conf 1101356671599884015838999999979-------208999972166679984789999999999999984699-95
Q 000726 1035 TLQIIKNEDLEELKELGSGTFGTVYHGKWRG-------TDVAIKRIKKSCFTGRSSEQERLTLEFWREAEILSKLHH-PN 1106 (1329)
Q Consensus 1035 ~l~~Is~eeYsllkvLGsGaFGtVYKAk~kG-------t~VAVKiIKks~~sd~s~edE~~~keFlREIeILkkLrH-PN 1106 (1329)
.-|++..++|++.+.||+|+||.||+|.+.+ +.||||.++... .......|.+|+.+|.++.| ||
T Consensus 57 ~~wEi~~~~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~-------~~~~~~~~~~E~~il~~l~hhpn 129 (353)
T 4ase_A 57 SKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGA-------THSEHRALMSELKILIHIGHHLN 129 (353)
T ss_dssp HHHBCCGGGEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTC-------CHHHHHHHHHHHHHHHHHCCCTT
T ss_pred CCCEECHHHEEEEEEEECCCCEEEEEEEECCCCCCCCCEEEEEEEECCCC-------CHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 55170579959820982178959999998688854477599999976235-------86899999999999997579984
Q ss_pred EEEEECCCCCCCCCEEEEEEEECCCCCHHHHHHCCC---------------CCCCHHHHHHHHHHHHHHHHHHHHCCEEE
Q ss_conf 526702111599971899998212883135441013---------------45799999999999999999989799030
Q 000726 1107 VVAFYGVVQDGPGGTLATVTEFMVNGSLRHVLLSKE---------------RHLDRRKRLIIAMDAAFGMEYLHSKNIVH 1171 (1329)
Q Consensus 1107 IVKLlGif~esseg~L~LVMEYieGGSL~dlL~~ke---------------k~LSe~qIlkIA~QIAsALaYLHskGIIH 1171 (1329)
||+++++|.+. ...+++|||||++|+|.+++.... ..+++..++.|+.||+.||.|||+++|+|
T Consensus 130 IV~l~g~~~~~-~~~~~iV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~yLH~~~iiH 208 (353)
T 4ase_A 130 VVNLLGACTKP-GGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKCIH 208 (353)
T ss_dssp BCCEEEEECCT-TSCCEEEEECCTTEEHHHHHHHTGGGBCCC-------CTTCBCHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred EEEEEEEEEEC-CCEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCEEC
T ss_conf 87788999946-97799999838989799999743566654333410110356899999999999999987676278435
Q ss_pred CCCCCCCEEECCCCCCCCCEEEEECCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 479875157546899888089942477522468---63236877987644721113688999905689999999999990
Q 000726 1172 FDLKCDNLLVNLKDPIRPICKVGDFGLSKIKRN---TLVTGGVRGTLPWMAPELLNGSSSKVSEKVDVFSFGIVLWEILT 1248 (1329)
Q Consensus 1172 RDLKPsNILIDsdGni~~~VKLsDFGLAkli~~---~~~ss~v~GT~~YlAPEvL~Gs~~~~SeKSDVWSLGVLLyELLT 1248 (1329)
|||||+|||++.++. +||+|||+|+.... .......+||+.|||||++. ...++.++|||||||+||||+|
T Consensus 209 RDLK~~NILl~~~~~----vKi~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~--~~~y~~ksDVwS~Gv~l~El~t 282 (353)
T 4ase_A 209 RDLAARNILLSEKNV----VKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIF--DRVYTIQSDVWSFGVLLWEIFS 282 (353)
T ss_dssp SCCSGGGEEECGGGC----EEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHH--HCCCCHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCEEECCCCC----EEECCCHHHHHCCCCCCCEEECCCCCCCCCCCHHHHH--CCCCCCCCCEEEHHHHHHHHHH
T ss_conf 746721130579997----8979654322245688720325401466656989994--6999975537406899999981
Q ss_pred -CCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf -999998988568999787258999999989299999999921589999989999999999999971
Q 000726 1249 -GEEPYANMHYGAIIGGIVNNTLRPPVPGFCDSEWRLLMEQCWAPDPVVRPSFTEIARRLRVMSAAC 1314 (1329)
Q Consensus 1249 -Gk~PFs~~~~~eilqqIve~~lrleip~~vSeeL~dLIkkCLq~DPeERPSaeELLk~Le~L~sa~ 1314 (1329)
|..||.+......+...+....+++.|..+++++.++|.+||+.||.+||||.+|+++|..+....
T Consensus 283 ~G~~Pf~~~~~~~~~~~~i~~g~~~~~p~~~~~~~~~li~~c~~~dP~~RPt~~eil~~L~~llq~~ 349 (353)
T 4ase_A 283 LGASPYPGVKIDEEFCRRLKEGTRMRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQAN 349 (353)
T ss_dssp TSCCSSTTCCCSHHHHHHHHHTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHH
T ss_conf 8999999989899999999738988888657899999999976869667939999999999999875
No 8
>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*
Probab=1.00 E-value=1 Score=393.97 Aligned_cols=269 Identities=25% Similarity=0.377 Sum_probs=225.3
Q ss_pred CCCCEEEEEEECCCCCEEEEEEEEC--CCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCC
Q ss_conf 5667159988401583899999997--92089999721666799847899999999999999846999552670211159
Q 000726 1040 KNEDLEELKELGSGTFGTVYHGKWR--GTDVAIKRIKKSCFTGRSSEQERLTLEFWREAEILSKLHHPNVVAFYGVVQDG 1117 (1329)
Q Consensus 1040 s~eeYsllkvLGsGaFGtVYKAk~k--Gt~VAVKiIKks~~sd~s~edE~~~keFlREIeILkkLrHPNIVKLlGif~es 1117 (1329)
..+.|++.++||+|+||.||+++++ |+.||||+++.... +.+|+.+++.++|||||++++++.+.
T Consensus 56 ~~~~~~~~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~~~-------------~~~E~~il~~l~HpnIV~l~~~~~~~ 122 (336)
T 4g3f_A 56 EVHWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEVF-------------RVEELVACAGLSSPRIVPLYGAVREG 122 (336)
T ss_dssp TTTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTC-------------CTHHHHTTTTCCCTTBCCEEEEEEET
T ss_pred CHHHEEECCEECCCCCEEEEEEEECCCCCEEEEEEECHHHH-------------HHHHHHHHHHCCCCCCCCEEEEEEEC
T ss_conf 53351768685138780999999889998999999788886-------------99999999857998999399999989
Q ss_pred CCCEEEEEEEECCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCEEECCCCCCCEEECCCCCCCCCEEEEECC
Q ss_conf 99718999982128831354410134579999999999999999998979903047987515754689988808994247
Q 000726 1118 PGGTLATVTEFMVNGSLRHVLLSKERHLDRRKRLIIAMDAAFGMEYLHSKNIVHFDLKCDNLLVNLKDPIRPICKVGDFG 1197 (1329)
Q Consensus 1118 seg~L~LVMEYieGGSL~dlL~~kek~LSe~qIlkIA~QIAsALaYLHskGIIHRDLKPsNILIDsdGni~~~VKLsDFG 1197 (1329)
. .++||||||++|+|.+++... ..+++..++.++.||+.||.|||+++|+||||||+|||++.++. .+||+|||
T Consensus 123 ~--~~~ivmEy~~gg~L~~~l~~~-~~l~e~~~~~~~~qi~~aL~ylH~~~IiHRDlKp~NILl~~~g~---~vKl~DFG 196 (336)
T 4g3f_A 123 P--WVNIFMELLEGGSLGQLIKQM-GCLPEDRALYYLGQALEGLEYLHTRRILHGDVKADNVLLSSDGS---RAALCDFG 196 (336)
T ss_dssp T--EEEEEECCCTTCBHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHHTTTEECSCCCGGGEEECTTSC---CEEECCCT
T ss_pred C--EEEEEEECCCCCCHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHHHHCCCEECCCCHHHEEEECCCC---EEEEEECC
T ss_conf 9--999999665998699999876-99999999999999999999999889042616778879958999---79996278
Q ss_pred CCCCCCCCC------CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf 752246863------23687798764472111368899990568999999999999099999898856899978725899
Q 000726 1198 LSKIKRNTL------VTGGVRGTLPWMAPELLNGSSSKVSEKVDVFSFGIVLWEILTGEEPYANMHYGAIIGGIVNNTLR 1271 (1329)
Q Consensus 1198 LAkli~~~~------~ss~v~GT~~YlAPEvL~Gs~~~~SeKSDVWSLGVLLyELLTGk~PFs~~~~~eilqqIve~~lr 1271 (1329)
+|+...... .....+||+.|||||++.+ ..++.++|||||||++|||++|+.||...........+......
T Consensus 197 la~~~~~~~~~~~~~~~~~~~GT~~YmAPE~~~~--~~y~~~~DiwSlGvilyemltG~~Pf~~~~~~~~~~~i~~~~~~ 274 (336)
T 4g3f_A 197 HALCLQPDGLGKSLLTGDYIPGTETHMAPEVVMG--KPCDAKVDIWSSCCMMLHMLNGCHPWTQYFRGPLCLKIASEPPP 274 (336)
T ss_dssp TCEEC------------CCCCCCGGGCCHHHHTT--CCCCTHHHHHHHHHHHHHHHHSSCSSTTTCCSCCHHHHHHSCCG
T ss_pred CCEECCCCCCCCCEECCCCCCCCCCCCCHHHHCC--CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCC
T ss_conf 7768567876540221785455802008999889--99890899999999999999786998998999999999808998
Q ss_pred -CCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf -9999989299999999921589999989999999999999971167889855579999
Q 000726 1272 -PPVPGFCDSEWRLLMEQCWAPDPVVRPSFTEIARRLRVMSAACQTKSHGHQVQNQVPK 1329 (1329)
Q Consensus 1272 -leip~~vSeeL~dLIkkCLq~DPeERPSaeELLk~Le~L~sa~st~s~e~~V~~qiPK 1329 (1329)
..++..+++.+.+||.+||+.||.+|||+.|++++|+.+......-.|.....-..|+
T Consensus 275 ~~~~~~~~s~~~~~li~~~L~~dP~~R~sa~el~~~l~~~l~~~~~l~hPw~~~~~~Pr 333 (336)
T 4g3f_A 275 IREIPPSCAPLTAQAIQEGLRKEPVHRASAMELRRKVGKALQEVGGLKSPWKGEYKEPR 333 (336)
T ss_dssp GGGSCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHTTSSCSCSSSSCCCCC
T ss_pred CHHCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 00258667999999999976289768959999999999997544321698767778999
No 9
>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A
Probab=1.00 E-value=1 Score=393.85 Aligned_cols=260 Identities=34% Similarity=0.544 Sum_probs=222.1
Q ss_pred CCCCCCCCCEEEEEEECCCCCEEEEEEEEC-------CCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCE
Q ss_conf 110135667159988401583899999997-------9208999972166679984789999999999999984699955
Q 000726 1035 TLQIIKNEDLEELKELGSGTFGTVYHGKWR-------GTDVAIKRIKKSCFTGRSSEQERLTLEFWREAEILSKLHHPNV 1107 (1329)
Q Consensus 1035 ~l~~Is~eeYsllkvLGsGaFGtVYKAk~k-------Gt~VAVKiIKks~~sd~s~edE~~~keFlREIeILkkLrHPNI 1107 (1329)
.++.+..+++++.+.||+|+||.||+|.+. ++.||||+++..... ....+|.+|+.++++++||||
T Consensus 19 ~~~ei~~~~~~~~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~~-------~~~~~f~~E~~il~~l~HpNI 91 (308)
T 4gt4_A 19 KLKEISLSAVRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEG-------PLREEFRHEAMLRARLQHPNV 91 (308)
T ss_dssp CCCBCCGGGEEEEEEEEECSSCEEEEEEEC-------CEEEEEEECCC-CCC--------CHHHHHHHHHHHHHCCCTTB
T ss_pred CCCCCCHHHCEEEEEECCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCCH-------HHHHHHHHHHHHHHHCCCCCC
T ss_conf 7222878888586691358884899999857765888869999998801496-------899999999999985899898
Q ss_pred EEEECCCCCCCCCEEEEEEEECCCCCHHHHHHCC---------------CCCCCHHHHHHHHHHHHHHHHHHHHCCEEEC
Q ss_conf 2670211159997189999821288313544101---------------3457999999999999999999897990304
Q 000726 1108 VAFYGVVQDGPGGTLATVTEFMVNGSLRHVLLSK---------------ERHLDRRKRLIIAMDAAFGMEYLHSKNIVHF 1172 (1329)
Q Consensus 1108 VKLlGif~esseg~L~LVMEYieGGSL~dlL~~k---------------ek~LSe~qIlkIA~QIAsALaYLHskGIIHR 1172 (1329)
|+++|+|.+.. .+++|||||++|+|.+++... ...+++..++.|+.||+.||.|||+++|+||
T Consensus 92 V~l~g~~~~~~--~~~lV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~iiHR 169 (308)
T 4gt4_A 92 VCLLGVVTKDQ--PLSMIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLSSHHVVHK 169 (308)
T ss_dssp CCEEEEECSSS--SCEEEEECCSSCBHHHHHHTTCSSCCCC-----CCEECCCCHHHHHHHHHHHHHHHHHHHHTTCCCS
T ss_pred CCCCEEEEECC--EEEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 77364998899--8899998189994999998627654333322111124689999999999999999999986899778
Q ss_pred CCCCCCEEECCCCCCCCCEEEEECCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH-
Q ss_conf 79875157546899888089942477522468---63236877987644721113688999905689999999999990-
Q 000726 1173 DLKCDNLLVNLKDPIRPICKVGDFGLSKIKRN---TLVTGGVRGTLPWMAPELLNGSSSKVSEKVDVFSFGIVLWEILT- 1248 (1329)
Q Consensus 1173 DLKPsNILIDsdGni~~~VKLsDFGLAkli~~---~~~ss~v~GT~~YlAPEvL~Gs~~~~SeKSDVWSLGVLLyELLT- 1248 (1329)
||||+|||++.++. +||+|||+++.... ........||+.|||||++. ...++.++|||||||+||||+|
T Consensus 170 DLK~~NILl~~~~~----~Ki~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~--~~~~s~ksDVwSfGvvl~El~t~ 243 (308)
T 4gt4_A 170 DLATRNVLVYDKLN----VKISDLGLFREVYAADYYKLLGNSLLPIRWMAPEAIM--YGKFSIDSDIWSYGVVLWEVFSY 243 (308)
T ss_dssp CCSGGGEEECGGGC----EEECCSCCBCGGGGGGCBCSSSSSCBCGGGCCHHHHH--HCCCCHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCEEECCCCC----EEECCCCCCEECCCCCCEEEECCCCCCCCCCCHHHHH--CCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 73623068879997----8988760202336777404734512577656989982--79999630001579999999968
Q ss_pred CCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
Q ss_conf 99999898856899978725899999998929999999992158999998999999999999
Q 000726 1249 GEEPYANMHYGAIIGGIVNNTLRPPVPGFCDSEWRLLMEQCWAPDPVVRPSFTEIARRLRVM 1310 (1329)
Q Consensus 1249 Gk~PFs~~~~~eilqqIve~~lrleip~~vSeeL~dLIkkCLq~DPeERPSaeELLk~Le~L 1310 (1329)
|..||.+....++...+. ...+++.+..++..+.+||.+||+.||.+||||.+|+++|+.+
T Consensus 244 g~~Pf~~~~~~~~~~~i~-~~~~~~~p~~~~~~~~~li~~C~~~dP~~RPs~~ei~~~L~a~ 304 (308)
T 4gt4_A 244 GLQPYCGYSNQDVVEMIR-NRQVLPCPDDCPAWVYALMIECWNEFPSRRPRFKDIHSRLRAW 304 (308)
T ss_dssp TCCTTTTCCHHHHHHHHH-TTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTS
T ss_pred CCCCCCCCCHHHHHHHHH-CCCCCCCCCCCHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHC
T ss_conf 999999989999999998-1998999620369999999997587965792999999999853
No 10
>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...
Probab=1.00 E-value=1 Score=391.73 Aligned_cols=259 Identities=25% Similarity=0.361 Sum_probs=221.7
Q ss_pred CCCCCEEEEEEECCCCCEEEEEEEEC--CCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCC
Q ss_conf 35667159988401583899999997--9208999972166679984789999999999999984699955267021115
Q 000726 1039 IKNEDLEELKELGSGTFGTVYHGKWR--GTDVAIKRIKKSCFTGRSSEQERLTLEFWREAEILSKLHHPNVVAFYGVVQD 1116 (1329)
Q Consensus 1039 Is~eeYsllkvLGsGaFGtVYKAk~k--Gt~VAVKiIKks~~sd~s~edE~~~keFlREIeILkkLrHPNIVKLlGif~e 1116 (1329)
...++|++.+.||+|+||.||++++. ++.||||++.+.... .+.....+.+|+.+|+.++|||||++++++.+
T Consensus 29 ~~~~dy~i~~~lG~G~fg~V~~a~~~~~~~~~AiK~i~k~~~~-----~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~ 103 (311)
T 4aw0_A 29 KRPEDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHII-----KENKVPYVTRERDVMSRLDHPFFVKLYFTFQD 103 (311)
T ss_dssp CCGGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHH-----HTTCHHHHHHHHHHHTTCCCTTBCCEEEEEEC
T ss_pred CCCCCCEEEEEEECCCCEEEEEEEECCCCCEEEEEEEEHHHCC-----CHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEE
T ss_conf 8852368988983164849999999999989999998888877-----97899999999999986799898919999973
Q ss_pred CCCCEEEEEEEECCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCEEECCCCCCCEEECCCCCCCCCEEEEEC
Q ss_conf 99971899998212883135441013457999999999999999999897990304798751575468998880899424
Q 000726 1117 GPGGTLATVTEFMVNGSLRHVLLSKERHLDRRKRLIIAMDAAFGMEYLHSKNIVHFDLKCDNLLVNLKDPIRPICKVGDF 1196 (1329)
Q Consensus 1117 sseg~L~LVMEYieGGSL~dlL~~kek~LSe~qIlkIA~QIAsALaYLHskGIIHRDLKPsNILIDsdGni~~~VKLsDF 1196 (1329)
.. .+|+|||||++|+|.+++... ..+++..+..++.||+.||.|||+++|+||||||+|||++.++. +||+||
T Consensus 104 ~~--~~yivmEy~~gG~L~~~i~~~-~~l~e~~~~~~~~qi~~al~ylH~~~IiHRDlKPeNILl~~~g~----vKl~DF 176 (311)
T 4aw0_A 104 DE--KLYFGLSYAKNGELLKYIRKI-GSFDETCTRFYTAEIVSALEYLHGKGIIHRDLKPENILLNEDMH----IQITDF 176 (311)
T ss_dssp SS--EEEEEECCCTTEEHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTSC----EEECCC
T ss_pred CC--EEEEEEECCCCCCHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHEEECCCCC----EEEEEC
T ss_conf 89--899999648998999999874-99999999999999999999999887826878789969858988----899876
Q ss_pred CCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCC
Q ss_conf 77522468---632368779876447211136889999056899999999999909999989885689997872589999
Q 000726 1197 GLSKIKRN---TLVTGGVRGTLPWMAPELLNGSSSKVSEKVDVFSFGIVLWEILTGEEPYANMHYGAIIGGIVNNTLRPP 1273 (1329)
Q Consensus 1197 GLAkli~~---~~~ss~v~GT~~YlAPEvL~Gs~~~~SeKSDVWSLGVLLyELLTGk~PFs~~~~~eilqqIve~~lrle 1273 (1329)
|+|+.... .......+||+.|||||++.+ ..++.++|||||||++|+|++|+.||...........+....+ .
T Consensus 177 Gla~~~~~~~~~~~~~~~~GTp~YmAPEvl~~--~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~~~~~i~~~~~--~ 252 (311)
T 4aw0_A 177 GTAKVLSPESKQARANSFVGTAQYVSPELLTE--KSACKSSDLWALGCIIYQLVAGLPPFRAGNEGLIFAKIIKLEY--D 252 (311)
T ss_dssp TTCEECCTTTTCCCBCCCCSCGGGCCHHHHHH--SCBCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCC--C
T ss_pred CCCEECCCCCCCCCCCCCCCCCCCCCHHHHCC--CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCC--C
T ss_conf 87502577877654367556803079989768--9999689899899999999749899899799999999971999--9
Q ss_pred CCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 9998929999999992158999998999999999999997
Q 000726 1274 VPGFCDSEWRLLMEQCWAPDPVVRPSFTEIARRLRVMSAA 1313 (1329)
Q Consensus 1274 ip~~vSeeL~dLIkkCLq~DPeERPSaeELLk~Le~L~sa 1313 (1329)
++..+++++.+||.+||+.||.+|||++|++.+.|.....
T Consensus 253 ~p~~~s~~~~dli~~lL~~dp~~R~t~~e~~~~~~i~~Hp 292 (311)
T 4aw0_A 253 FPEKFFPKARDLVEKLLVLDATKRLGCEEMEGYGPLKAHP 292 (311)
T ss_dssp CCTTCCHHHHHHHHHHSCSSGGGSTTSGGGTCHHHHHTSG
T ss_pred CCCCCCHHHHHHHHHHCCCCHHHCCCHHHHCCCHHHHCCC
T ss_conf 9965699999999997628975780967975877987798
Done!