BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 000727
         (1328 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1IG0|A Chain A, Crystal Structure Of Yeast Thiamin Pyrophosphokinase
 pdb|1IG0|B Chain B, Crystal Structure Of Yeast Thiamin Pyrophosphokinase
          Length = 319

 Score = 30.8 bits (68), Expect = 5.7,   Method: Composition-based stats.
 Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 7/78 (8%)

Query: 192 DQQSMEIDSIGNFCVGN----NEHFEQIRRKNSLLVIEVLNKL-MDSSKAMVLLRLIHFN 246
           D +++ I  + N+ +G+    +E   +  RKN + +I+   +   D +K + L+ L HFN
Sbjct: 81  DDETLRIKYLPNYIIGDLDSLSEKVYKYYRKNKVTIIKQTTQYSTDFTKCVNLISL-HFN 139

Query: 247 MPESFNGLLQRLQFLEAN 264
            PE F  L+     L++N
Sbjct: 140 SPE-FRSLISNKDNLQSN 156


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.134    0.406 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,853,278
Number of Sequences: 62578
Number of extensions: 1170827
Number of successful extensions: 2417
Number of sequences better than 100.0: 1
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2417
Number of HSP's gapped (non-prelim): 1
length of query: 1328
length of database: 14,973,337
effective HSP length: 110
effective length of query: 1218
effective length of database: 8,089,757
effective search space: 9853324026
effective search space used: 9853324026
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)