Query 000727
Match_columns 1328
No_of_seqs 47 out of 49
Neff 2.8
Searched_HMMs 29240
Date Tue Mar 26 17:36:53 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000727.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_497-501//hhsearch_pdb/000727hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dw9_A Cyanate lyase; cyanate 1.0 1 1 29.9 -0.2 95 58-157 36-137 (156)
2 2vy1_A Protein leafy, leafy; D 1.0 1 1 22.1 -0.0 18 841-858 175-192 (194)
3 3sp1_A Cysteinyl-tRNA syntheta 1.0 1 1 19.9 0.9 15 924-938 213-230 (501)
4 3lsz_A Glutathione S-transfera 1.0 1 1 16.3 -0.0 34 783-816 188-223 (225)
5 3iac_A Glucuronate isomerase; 1.0 1 1 16.1 0.0 14 663-676 27-40 (473)
6 4e98_A CUTA1 divalent ION tole 1.0 1 1 15.2 0.1 26 515-542 52-83 (138)
7 3tou_A Glutathione S-transfera 1.0 1 1 15.2 0.6 37 783-819 178-216 (226)
8 1g12_A Peptidyl-Lys metalloend 1.0 1 1 15.1 -1.2 47 1233-1280 52-101 (167)
9 3gsd_A Divalent-cation toleran 1.0 1 1 15.1 0.1 22 517-540 39-66 (122)
10 4fmw_A RNA (guanine-9-)-methyl 1.0 1 1 15.1 1.7 84 281-372 106-190 (197)
No 1
>1dw9_A Cyanate lyase; cyanate degradation, structural genomics, PSI, protei structure initiative, midwest center for structural genomic; HET: SO4; 1.65A {Escherichia coli} SCOP: a.35.1.4 d.72.1.1 PDB: 1dwk_A* 2ivq_A 2ivb_A 2iu7_A 2iv1_A 2iuo_A 2ivg_A
Probab=1.00 E-value=1 Score=29.95 Aligned_cols=95 Identities=22% Similarity=0.304 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCC-------CCHHHHHHHHHHHHHCCCCCCC
Q ss_conf 215899998561369972036888999870663069998642045446876-------7545889999986100133222
Q 000727 58 VELGEVLVSYLCFQNNHPSLWKFLDYALTSNLLSPIHILSLLTSRVIPHRR-------SQPQAFRLYLELLSRYALNFHA 130 (1328)
Q Consensus 58 ~ELAevLVs~LCf~nN~Ps~WKfLe~ALssrLvsPLhvLALLSsRVIP~R~-------~qPeAYRLYLELL~r~aFs~~~ 130 (1328)
.++.++.++.+|.+.+.|+ +...++.-. -|=-|--.++.| .++|.|- .-|.-||+| |.+..|+-+++.
T Consensus 36 iG~S~v~vtaa~lGQ~~ls-~e~A~kLa~-~LgL~~e~~~~l--~~~P~rg~~~~~~ptdP~iYR~y-E~v~vYG~~~K~ 110 (156)
T 1dw9_A 36 TGLAEAFVTAALLGQQALP-ADAARLVGA-KLDLDEDSILLL--QMIPLRGCIDDRIPTDPTMYRFY-EMLQVYGTTLKA 110 (156)
T ss_dssp SSSCHHHHHHHHTTSSCCC-HHHHHHHHH-HTTCCHHHHHHT--TSBCCCCCCSSSSCCSHHHHHHH-HHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHCCCCCCC-HHHHHHHHH-HHCCCHHHHHHH--HCCCCCCCCCCCCCCCCEEHHHH-HHHHHHHHHHHH
T ss_conf 6969999999981789999-999999999-969399999998--46996788999899998102389-999875689999
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 345541469898199985000136864
Q 000727 131 VASEDCNVKIIESIEACLQLSRTYNVR 157 (1328)
Q Consensus 131 ~i~~pn~~kimkSID~~L~LS~~~g~~ 157 (1328)
.|+..--|-||..||=-+...+.-+-.
T Consensus 111 li~E~FGDGIMSAIdF~~~v~k~~dp~ 137 (156)
T 1dw9_A 111 LVHEKFGDGIISAINFKLDVKKVADPE 137 (156)
T ss_dssp HHHHHTCSEEEEEEEEEEEEEEEECTT
T ss_pred HHHHHCCCCEEEEEEEEEEEEEECCCC
T ss_conf 998770765676655004667621899
No 2
>2vy1_A Protein leafy, leafy; DNA-binding, polymorphism, transcription; 2.10A {Arabidopsis thaliana} PDB: 2vy2_A
Probab=1.00 E-value=1 Score=22.12 Aligned_cols=18 Identities=28% Similarity=0.471 Sum_probs=11.9
Q ss_pred CCCCCCCCCCCCCCCCCC
Q ss_conf 999999889999998665
Q 000727 841 TPPSGSASESPACTGEDA 858 (1328)
Q Consensus 841 s~sSss~~gSs~~~~dD~ 858 (1328)
++.+||++|--|.++||-
T Consensus 175 ~~~~~~~~~~~~~~~~~~ 192 (194)
T 2vy1_A 175 SCTGSSTSGRGGCGGDDL 192 (194)
T ss_dssp ------------------
T ss_pred CCCCCCCCCCCCCCCCCC
T ss_conf 889877778887786656
No 3
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Probab=1.00 E-value=1 Score=19.92 Aligned_cols=15 Identities=27% Similarity=0.671 Sum_probs=7.3
Q ss_pred CCCCCCCC--C-CCCCCC
Q ss_conf 23334568--9-999998
Q 000727 924 IWKAVPMN--G-TDWPSP 938 (1328)
Q Consensus 924 iWKpv~MN--G-tDWPSP 938 (1328)
+||+++-. | .-|+||
T Consensus 213 lWk~~p~~~~~~~~W~sp 230 (501)
T 3sp1_A 213 LWFTNSKFKDQEMKWDSP 230 (501)
T ss_dssp EEEECCC-----CCBCCT
T ss_pred HCCCCCCCCCCCCEECCC
T ss_conf 607777899998143398
No 4
>3lsz_A Glutathione S-transferase; xenobiotic, biodegradative metabolism, PSI2, NYSGXRC, structural genomics, protein structure initiative; HET: GSH; 1.70A {Rhodobacter sphaeroides}
Probab=1.00 E-value=1 Score=16.27 Aligned_cols=34 Identities=21% Similarity=0.565 Sum_probs=26.8
Q ss_pred EECCCCHHHHHH--HHCHHHHHHHHCCCCCCCCHHH
Q ss_conf 104672025877--2010358763105567991448
Q 000727 783 YIDHFPKLRAWY--CQNKTCIASTLSGLCSGNPVHQ 816 (1328)
Q Consensus 783 ~iDSFPKLr~WY--~Q~qaCiAStlSgl~~g~pvhq 816 (1328)
..+.||+|+.|| ++.+..+..++.....++|-|.
T Consensus 188 ~~~~~p~l~~w~~~~~~~p~~~~~~~~~~~~~~~~~ 223 (225)
T 3lsz_A 188 LLEPFPAVAAWLDRCQSRPAFRLMMERRAAEGHHHH 223 (225)
T ss_dssp TTTTCHHHHHHHHHHHTSHHHHHHHHHHHHCCCCCC
T ss_pred CCCCCHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCC
T ss_conf 700091899999999759899999863424677656
No 5
>3iac_A Glucuronate isomerase; IDP02065, structural genom center for structural genomics of infectious diseases, CSGI; 2.22A {Salmonella typhimurium} SCOP: c.1.9.0
Probab=1.00 E-value=1 Score=16.11 Aligned_cols=14 Identities=14% Similarity=0.268 Sum_probs=6.7
Q ss_pred CCCEEEECCCCCCH
Q ss_conf 55012000147613
Q 000727 663 VDTVHILSLHGLVP 676 (1328)
Q Consensus 663 vD~vhIlSlhGlvP 676 (1328)
+.-.+|++-||-++
T Consensus 27 a~~lPIiDyH~Hl~ 40 (473)
T 3iac_A 27 AAPMPIYDFHCHLS 40 (473)
T ss_dssp TTTSCEEECSCCCC
T ss_pred HHCCCEECCCCCCC
T ss_conf 84698779888979
No 6
>4e98_A CUTA1 divalent ION tolerance protein; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, signaling protein; 2.00A {Cryptosporidium parvum}
Probab=1.00 E-value=1 Score=15.24 Aligned_cols=26 Identities=31% Similarity=0.664 Sum_probs=18.8
Q ss_pred HHHHHHH----HHHHHCCCC--CCCEEECCCCCC
Q ss_conf 1478999----986201122--341110132112
Q 000727 515 MRHLIVE----ACIARNLID--TSAYYWPGYVSA 542 (1328)
Q Consensus 515 mrHLIVE----aCIaRnLlD--tS~Y~WpGyv~~ 542 (1328)
+-+.+|| ||+ |++. +|.|.|-|-+..
T Consensus 52 IA~~LVe~rLAACV--nI~p~i~SiY~WeG~Ie~ 83 (138)
T 4e98_A 52 IAKTLVDEELCACV--SIIPSVRSIYKFKGQVHD 83 (138)
T ss_dssp HHHHHHHTTSCSEE--EEEEEEEEEEEETTEEEE
T ss_pred HHHHHHHCCCEEEE--EECCCEEEEEEECCEEEE
T ss_conf 99999977924699--815992199996892628
No 7
>3tou_A Glutathione S-transferase protein; GSH binding site, GSH; HET: GSH; 1.75A {Ralstonia solanacearum} PDB: 3tot_A*
Probab=1.00 E-value=1 Score=15.19 Aligned_cols=37 Identities=11% Similarity=0.123 Sum_probs=28.8
Q ss_pred EECCCCHHHHHH--HHCHHHHHHHHCCCCCCCCHHHHHH
Q ss_conf 104672025877--2010358763105567991448899
Q 000727 783 YIDHFPKLRAWY--CQNKTCIASTLSGLCSGNPVHQVAN 819 (1328)
Q Consensus 783 ~iDSFPKLr~WY--~Q~qaCiAStlSgl~~g~pvhqv~~ 819 (1328)
..+.||+|+.|| ++....+..++....+.+|+.+--+
T Consensus 178 ~~~~~p~l~~w~~r~~~~p~~~~~~~~~~~~~~~~~~~~ 216 (226)
T 3tou_A 178 WREQHANLAAFYTRIEKRPSFLETQPQAENLYFQSHHHH 216 (226)
T ss_dssp HHHHCHHHHHHHHHHHTSHHHHTTCGGGGGCGGGCC---
T ss_pred HHHCCHHHHHHHHHHHCCHHHHHHCCCHHHHHHHHCCCC
T ss_conf 011196899999998649899973862443445302443
No 8
>1g12_A Peptidyl-Lys metalloendopeptidase; zinc cordinate,metalloprotease, hydrolase; HET: MAN; 1.60A {Grifola frondosa} SCOP: d.92.1.12 PDB: 1ge5_A* 1ge6_A* 1ge7_A*
Probab=1.00 E-value=1 Score=15.14 Aligned_cols=47 Identities=17% Similarity=0.165 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHCCCEECCCCCHH--HHHHHHHHHHH-HHCCCCCC
Q ss_conf 01357988899989861394020355111--65899877766-31256420
Q 000727 1233 RRRYLIGTHFEYLSRALEGNIKLGCDPAT--WRAYVSCLVGL-VVSSAPAW 1280 (1328)
Q Consensus 1233 rR~~v~g~HleFla~~l~g~IslgC~~~t--WraYvs~fv~L-mV~~~P~W 1280 (1328)
+|.+|.+ |++-+++.-+|.+.+.|+|.. |-|||..--.. ++-|-+-|
T Consensus 52 ~~~~V~~-~f~~i~~~~~~~~~~~C~C~~~~~~Ay~~p~~~~~i~~Cp~f~ 101 (167)
T 1g12_A 52 RHSTVLQ-HYTDMNSNDFSSYSFDCTCTAAGTFAYVYPNRFGTVYLCGAFW 101 (167)
T ss_dssp HHHHHHH-HHHHHHTSCGGGCEEECCCCCSSCCEECCTTSTTEEEECGGGG
T ss_pred HHHHHHH-HHHHHHHCCCCCEEEEECCCCCCCEEEEECCCCCEEEECCCHH
T ss_conf 9999999-9999985668840586016899817788479997689898211
No 9
>3gsd_A Divalent-cation tolerance protein CUTA; IDP00456, metal-BIN structural genomics, center for structural genomics of INFE diseases, csgid; HET: EPE; 2.05A {Yersinia pestis CO92} SCOP: d.58.5.2
Probab=1.00 E-value=1 Score=15.08 Aligned_cols=22 Identities=41% Similarity=0.975 Sum_probs=0.0
Q ss_pred HHHHH----HHHHHCCCC--CCCEEECCCC
Q ss_conf 78999----986201122--3411101321
Q 000727 517 HLIVE----ACIARNLID--TSAYYWPGYV 540 (1328)
Q Consensus 517 HLIVE----aCIaRnLlD--tS~Y~WpGyv 540 (1328)
+.+|| ||+ |++. +|.|.|-|-+
T Consensus 39 ~~Lve~rLAACV--ni~p~i~S~Y~W~G~i 66 (122)
T 3gsd_A 39 AQVLGEKLAACV--TLLPGATSLYYWEGKL 66 (122)
T ss_dssp HHHHHTTSCSEE--EEEEEEEEEEEETTEE
T ss_pred HHHHHCCCEEEE--EECCCEEEEEEECCEE
T ss_conf 999978926799--8259946999989998
No 10
>4fmw_A RNA (guanine-9-)-methyltransferase domain-contain protein 2; structural genomics, structural genomics consortium, SGC, RN modification; HET: SAH; 2.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=15.06 Aligned_cols=84 Identities=20% Similarity=0.347 Sum_probs=0.0
Q ss_pred HHHHCCCCCCCCCCCCCCCEEEEECCCC-CCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 7310146666532344440432521468-877766567677656542145676401479986675226999999999999
Q 000727 281 LCDNVRNVPSYDYKLNKHRFIGMLIDTK-SLRPMRSCNSESSWSSCWLSFDIFMENSMDGKQLPVTSAIIVLTRIITTLR 359 (1328)
Q Consensus 281 L~~~i~~V~~~~yk~~~~~~~~~l~~~~-s~~s~~g~~~Gas~Sa~WlPfDiylEdaMDG~ql~~tSaIEiL~~liKtlq 359 (1328)
|++|...+++ ++.+++--++|.++|-+ .-+.+....-..|-...=||+|=|+. |.++++-+++.+--+ -++
T Consensus 106 LtpDs~~~L~-~~~~~~vYIIGGiVD~n~~K~lt~~~A~~~gi~taRLPi~~~i~--~~~~kvLtiN~V~eI-----Ll~ 177 (197)
T 4fmw_A 106 LTSDSPNILK-ELDESKAYVIGGLVDHNHHKGLTYKQASDYGINHAQLPLGNFVK--MNSRKVLAVNHVFEI-----ILE 177 (197)
T ss_dssp ECTTCSCBCC-SCCTTSEEEEECCCCTTSSTTHHHHHHHHHTCEEEBCCCTTTC------CCCCCHHHHHHH-----HHH
T ss_pred ECCCCHHHHH-CCCCCCEEEEEEEEECCCCCCHHHHHHHHCCCCEEECCCCCEEE--CCCCCCCCHHHHHHH-----HHH
T ss_conf 7899445530-66999889997888689984362999998699889556226341--689831249999999-----999
Q ss_pred HHHHCCHHHHHHH
Q ss_conf 8730305898999
Q 000727 360 VLNRASWQETFLA 372 (1328)
Q Consensus 360 ~vN~asW~etFla 372 (1328)
..+.-+|.++|+.
T Consensus 178 ~~~~~dW~~Al~~ 190 (197)
T 4fmw_A 178 YLETRDWQEAFFT 190 (197)
T ss_dssp HHHHCCHHHHHHH
T ss_pred HHHCCCHHHHHHH
T ss_conf 9817999999998
Done!