Query 000727
Match_columns 1328
No_of_seqs 47 out of 49
Neff 2.8
Searched_HMMs 13730
Date Tue Mar 26 17:45:10 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000727.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H1_497-501//hhsearch_scop/000727hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2cvda1 a.45.1.1 (A:76-199) Cl 8.7 36 0.0027 10.3 1.4 57 730-805 56-116 (124)
2 d2c4ja1 a.45.1.1 (A:86-218) Cl 8.1 39 0.0028 10.1 1.3 26 782-807 88-115 (133)
3 d1dwka2 d.72.1.1 (A:87-156) Cy 7.2 5.4 0.00039 15.9 -4.7 46 109-155 4-49 (70)
4 d3gtub1 a.45.1.1 (B:85-224) Cl 5.6 61 0.0045 8.8 1.5 27 780-806 90-118 (140)
5 d1v54e_ a.118.11.1 (E:) Cytoch 5.6 61 0.0045 8.8 5.4 69 858-962 14-98 (105)
6 d1m0ua1 a.45.1.1 (A:123-249) C 5.2 67 0.0049 8.5 0.8 11 784-794 96-106 (127)
7 d1gsua1 a.45.1.1 (A:85-217) Cl 4.6 79 0.0057 8.0 2.4 25 781-805 87-113 (133)
8 d1tu7a1 a.45.1.1 (A:78-208) Cl 4.5 81 0.0059 7.9 1.4 24 782-805 90-115 (131)
9 d1a8ra_ d.96.1.1 (A:) GTP cycl 4.1 91 0.0066 7.6 2.2 13 407-419 155-167 (221)
10 d1okta1 a.45.1.1 (A:86-211) Pf 4.0 92 0.0067 7.6 1.5 38 738-794 68-105 (126)
No 1
>d2cvda1 a.45.1.1 (A:76-199) Class sigma GST {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.75 E-value=36 Score=10.28 Aligned_cols=57 Identities=18% Similarity=0.170 Sum_probs=30.0
Q ss_pred CHHHCCCC--CCCCCCCHHHHHHHCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCEEECCCCHHHHHH--HHCHHHHHHHH
Q ss_conf 00001598--656867846888731343334563012100247777766679970104672025877--20103587631
Q 000727 730 HELCLSGG--TLAGELTLEYLLLLHNSHIASRTSAAQSERNSNLDQLDTVSDDPIYIDHFPKLRAWY--CQNKTCIASTL 805 (1328)
Q Consensus 730 lE~~l~~~--~vgs~ltleyLLllrN~~~~~~~~~~~~~~~~~~~~~~~~s~~Pv~iDSFPKLr~WY--~Q~qaCiAStl 805 (1328)
+|..+.+. -+|.++|.-=+.+..--. .. ...+|..++.||+|+.|| +++.--|+..+
T Consensus 56 le~~L~~~~yl~G~~~T~aDi~l~~~l~----------~~---------~~~~~~~~~~~P~L~~~~~rv~~~P~vk~yl 116 (124)
T d2cvda1 56 LDTYLGGREWLIGMSVTWADFYWEICST----------TL---------LVFKPDLLDNHPRLVTLRKKVQAIPAVANWI 116 (124)
T ss_dssp HHHHHTTCSSSSTTSCCHHHHHHHHHHH----------HH---------HHHCTTTTTTCHHHHHHHHHHHTSHHHHHHH
T ss_pred HHHHHCCCCEEECCCCCHHHHHHHHHHH----------HH---------HHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_conf 9998177980107857198999999999----------99---------9863265530699999999999099999999
No 2
>d2c4ja1 a.45.1.1 (A:86-218) Class mu GST {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.08 E-value=39 Score=10.09 Aligned_cols=26 Identities=19% Similarity=0.424 Sum_probs=16.7
Q ss_pred EEECCCCHHHHHH--HHCHHHHHHHHCC
Q ss_conf 0104672025877--2010358763105
Q 000727 782 IYIDHFPKLRAWY--CQNKTCIASTLSG 807 (1328)
Q Consensus 782 v~iDSFPKLr~WY--~Q~qaCiAStlSg 807 (1328)
-.+|.||+|++|| +++..-|+.-+..
T Consensus 88 ~~l~~~P~L~~~~~rv~~~P~ik~yl~s 115 (133)
T d2c4ja1 88 SCLDAFPNLKDFISRFEGLEKISAYMKS 115 (133)
T ss_dssp TTTTTCHHHHHHHHHHHHSHHHHHHHHS
T ss_pred HHHHHCCHHHHHHHHHHHCHHHHHHHHC
T ss_conf 1656594599999999829899999838
No 3
>d1dwka2 d.72.1.1 (A:87-156) Cyanase C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=7.17 E-value=5.4 Score=15.88 Aligned_cols=46 Identities=26% Similarity=0.508 Sum_probs=34.2
Q ss_pred CCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC
Q ss_conf 75458899999861001332223455414698981999850001368
Q 000727 109 SQPQAFRLYLELLSRYALNFHAVASEDCNVKIIESIEACLQLSRTYN 155 (1328)
Q Consensus 109 ~qPeAYRLYLELL~r~aFs~~~~i~~pn~~kimkSID~~L~LS~~~g 155 (1328)
.-|.-||+| |.+..|+-+++..|...--|-||..||=.+...+.-+
T Consensus 4 tDP~iYR~y-E~v~vYG~~~K~li~E~FGDGIMSAIdF~~~v~k~~d 49 (70)
T d1dwka2 4 TDPTMYRFY-EMLQVYGTTLKALVHEKFGDGIISAINFKLDVKKVAD 49 (70)
T ss_dssp CSHHHHHHH-HHHHHHHHHHHHHHHHHTCSEEEEEEEEEEEEEEEEC
T ss_pred CCCHHHHHH-HHHHHHCHHHHHHHHHHCCCCEEEEEEEEEEEEEECC
T ss_conf 774656678-9998746889999988706547776760146786008
No 4
>d3gtub1 a.45.1.1 (B:85-224) Class mu GST {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.58 E-value=61 Score=8.76 Aligned_cols=27 Identities=37% Similarity=0.629 Sum_probs=15.8
Q ss_pred CCEEECCCCHHHHHH--HHCHHHHHHHHC
Q ss_conf 970104672025877--201035876310
Q 000727 780 DPIYIDHFPKLRAWY--CQNKTCIASTLS 806 (1328)
Q Consensus 780 ~Pv~iDSFPKLr~WY--~Q~qaCiAStlS 806 (1328)
.|...+.||+|+.|| +++..-|+.-+.
T Consensus 90 ~~~~~~~~P~L~~~~~rv~~~P~Ik~yl~ 118 (140)
T d3gtub1 90 DPKCLDEFPNLKAFMCRFEALEKIAAYLQ 118 (140)
T ss_dssp CGGGGTTCHHHHHHHHHHHTSHHHHHHHH
T ss_pred CCCCHHCCHHHHHHHHHHHCCHHHHHHHH
T ss_conf 92000007589999999983988999981
No 5
>d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]}
Probab=5.57 E-value=61 Score=8.76 Aligned_cols=69 Identities=30% Similarity=0.611 Sum_probs=42.0
Q ss_pred CCCCCCCCHHHHHH-----------HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHH-----HHHHC
Q ss_conf 54899974257863-----------234689999853026988911454536554210303599999763-----31110
Q 000727 858 AYQRPMLPAWEVLE-----------AIPFVLEAILSACAYGRLSSRDLITGLRELVDFLPASIATIISYF-----SAEIS 921 (1328)
Q Consensus 858 ~~~rp~lPAWeiLE-----------AvPfVlea~LTACaHGrLS~RdL~TGLrdL~DFLPASlatIvSYf-----SAEvT 921 (1328)
-..||.+-.||+-. --|=|++|+|-|| |-+-|| |+-|-+| -.+..
T Consensus 14 ~F~~~~iD~we~rrgmN~l~~~DlVPeP~Ii~aALrAc--------------RRvND~-----alAVR~lE~vK~K~~~~ 74 (105)
T d1v54e_ 14 YFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRAC--------------RRLNDF-----ASAVRILEVVKDKAGPH 74 (105)
T ss_dssp HHTCTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHH--------------HHTTCH-----HHHHHHHHHHHHHTTTC
T ss_pred HHCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH--------------HHHHHH-----HHHHHHHHHHHHHHCCC
T ss_conf 84675740899999999985156689909999999999--------------884007-----99999999999873470
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCC
Q ss_conf 23233345689999998999120599999999971756788
Q 000727 922 RGIWKAVPMNGTDWPSPAPMLPSIESEIKEILAAVGVSVPC 962 (1328)
Q Consensus 922 RGiWKpv~MNGtDWPSPaanL~~ve~~iK~ILAa~GV~vP~ 962 (1328)
.++|.+ +-+|||..+.--|++-|-
T Consensus 75 k~~y~y-----------------ilqelkptl~ELGI~t~E 98 (105)
T d1v54e_ 75 KEIYPY-----------------VIQELRPTLNELGISTPE 98 (105)
T ss_dssp TTHHHH-----------------HHHHHHHHHHHHTCCCTT
T ss_pred HHHHHH-----------------HHHHHHHHHHHHCCCCHH
T ss_conf 889999-----------------999986699995899888
No 6
>d1m0ua1 a.45.1.1 (A:123-249) Class sigma GST {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=5.20 E-value=67 Score=8.50 Aligned_cols=11 Identities=27% Similarity=0.673 Sum_probs=5.8
Q ss_pred ECCCCHHHHHH
Q ss_conf 04672025877
Q 000727 784 IDHFPKLRAWY 794 (1328)
Q Consensus 784 iDSFPKLr~WY 794 (1328)
.|.||+|++||
T Consensus 96 ~~~~P~L~~~~ 106 (127)
T d1m0ua1 96 LEPYPALRGVV 106 (127)
T ss_dssp TTTCHHHHHHH
T ss_pred HHCCHHHHHHH
T ss_conf 44485899999
No 7
>d1gsua1 a.45.1.1 (A:85-217) Class mu GST {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=4.57 E-value=79 Score=8.03 Aligned_cols=25 Identities=12% Similarity=0.109 Sum_probs=16.3
Q ss_pred CEEECCCCHHHHHH--HHCHHHHHHHH
Q ss_conf 70104672025877--20103587631
Q 000727 781 PIYIDHFPKLRAWY--CQNKTCIASTL 805 (1328)
Q Consensus 781 Pv~iDSFPKLr~WY--~Q~qaCiAStl 805 (1328)
|-.+|.||+|+.|| +.+..-|+.-+
T Consensus 87 ~~~l~~~P~L~~~~~~v~~~P~Ik~yl 113 (133)
T d1gsua1 87 PDCPELQGNLSQFLQRFEALEKISAYM 113 (133)
T ss_dssp TTCGGGSSHHHHHHHHHHTSHHHHHHH
T ss_pred CCHHHHCCHHHHHHHHHHHCHHHHHHH
T ss_conf 444233835999999998398999998
No 8
>d1tu7a1 a.45.1.1 (A:78-208) Class pi GST {Onchocerca volvulus [TaxId: 6282]}
Probab=4.46 E-value=81 Score=7.94 Aligned_cols=24 Identities=17% Similarity=0.391 Sum_probs=11.5
Q ss_pred EEECCCCHHHHHH--HHCHHHHHHHH
Q ss_conf 0104672025877--20103587631
Q 000727 782 IYIDHFPKLRAWY--CQNKTCIASTL 805 (1328)
Q Consensus 782 v~iDSFPKLr~WY--~Q~qaCiAStl 805 (1328)
-.+|.||+|++|| +.+..-|+.-+
T Consensus 90 ~~~~~~P~L~~~~~rv~~~P~Ik~yl 115 (131)
T d1tu7a1 90 HCLDKFPLLKVFHQRMKDRPKLKEYC 115 (131)
T ss_dssp TTTTTCHHHHHHHHHHHTSHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHCCHHHHHHH
T ss_conf 44210479999999999098899998
No 9
>d1a8ra_ d.96.1.1 (A:) GTP cyclohydrolase I {Escherichia coli [TaxId: 562]}
Probab=4.07 E-value=91 Score=7.60 Aligned_cols=13 Identities=15% Similarity=-0.005 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 5789989898654
Q 000727 407 PLAIANVLAEQAN 419 (1328)
Q Consensus 407 pLaia~il~Ee~~ 419 (1328)
+--||+.|.+.-+
T Consensus 155 T~qIA~al~~~l~ 167 (221)
T d1a8ra_ 155 TQQILIALQTLLG 167 (221)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHC
T ss_conf 9999999999849
No 10
>d1okta1 a.45.1.1 (A:86-211) Pf GST {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]}
Probab=4.04 E-value=92 Score=7.57 Aligned_cols=38 Identities=21% Similarity=0.297 Sum_probs=20.8
Q ss_pred CCCCCCCHHHHHHHCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCEEECCCCHHHHHH
Q ss_conf 656867846888731343334563012100247777766679970104672025877
Q 000727 738 TLAGELTLEYLLLLHNSHIASRTSAAQSERNSNLDQLDTVSDDPIYIDHFPKLRAWY 794 (1328)
Q Consensus 738 ~vgs~ltleyLLllrN~~~~~~~~~~~~~~~~~~~~~~~~s~~Pv~iDSFPKLr~WY 794 (1328)
-||..+|.-=+.+..--. . . . ...|-.++.||+|++||
T Consensus 68 lvG~~~T~AD~~~~~~l~--~--------~-~--------~~~~~~~~~~P~L~~~~ 105 (126)
T d1okta1 68 FVGNNLTYADLAVFNLYD--D--------I-E--------TKYPSSLKNFPLLKAHN 105 (126)
T ss_dssp SSTTSCCHHHHHHHHHHH--H--------H-H--------TTSCCTTTTCHHHHHHH
T ss_pred EECCCCCHHHHHHHHHHH--H--------H-H--------HHCCCCCCCCHHHHHHH
T ss_conf 535776488999999999--9--------9-9--------85965121071899999
Done!