Query 000728
Match_columns 1326
No_of_seqs 764 out of 4514
Neff 6.1
Searched_HMMs 46136
Date Mon Apr 1 22:44:32 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000728.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000728hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1144 Translation initiation 100.0 5E-164 1E-168 1428.3 67.0 788 503-1324 205-1000(1064)
2 TIGR00491 aIF-2 translation in 100.0 5.6E-90 1.2E-94 844.4 51.4 521 791-1323 1-526 (590)
3 COG0532 InfB Translation initi 100.0 6.2E-90 1.3E-94 806.9 44.0 470 791-1323 2-477 (509)
4 PRK04004 translation initiatio 100.0 1.5E-88 3.2E-93 835.3 52.0 521 790-1323 2-528 (586)
5 PRK14845 translation initiatio 100.0 5.9E-89 1.3E-93 866.1 49.9 515 794-1323 465-984 (1049)
6 KOG1145 Mitochondrial translat 100.0 6.5E-81 1.4E-85 718.1 36.4 454 788-1322 147-644 (683)
7 TIGR00487 IF-2 translation ini 100.0 1.6E-74 3.4E-79 709.7 44.3 452 790-1323 83-556 (587)
8 PRK05306 infB translation init 100.0 2E-73 4.2E-78 713.2 46.3 450 790-1323 286-758 (787)
9 CHL00189 infB translation init 100.0 5.7E-72 1.2E-76 694.2 42.5 453 791-1323 241-712 (742)
10 COG5256 TEF1 Translation elong 100.0 1.8E-31 3.9E-36 305.3 21.3 261 794-1115 7-317 (428)
11 TIGR00475 selB selenocysteine- 100.0 1.6E-30 3.4E-35 322.2 26.2 254 795-1114 1-261 (581)
12 PRK10512 selenocysteinyl-tRNA- 100.0 1.4E-30 3E-35 323.5 25.3 252 795-1114 1-260 (614)
13 PTZ00141 elongation factor 1- 100.0 1.2E-30 2.5E-35 314.3 23.0 259 795-1113 8-317 (446)
14 PLN00043 elongation factor 1-a 100.0 4.5E-30 9.8E-35 309.1 23.5 259 795-1113 8-317 (447)
15 PRK12736 elongation factor Tu; 100.0 9E-30 1.9E-34 303.1 25.8 257 794-1113 12-296 (394)
16 PLN03127 Elongation factor Tu; 100.0 2.3E-29 5E-34 302.7 26.7 260 793-1113 60-349 (447)
17 PRK12735 elongation factor Tu; 100.0 4.6E-29 1E-33 297.2 26.1 257 794-1113 12-298 (396)
18 PLN03126 Elongation factor Tu; 100.0 3.3E-29 7.1E-34 302.9 24.4 258 794-1114 81-376 (478)
19 PRK12317 elongation factor 1-a 100.0 2.6E-29 5.7E-34 302.2 23.2 260 794-1114 6-310 (425)
20 KOG0462 Elongation factor-type 100.0 7.7E-30 1.7E-34 296.7 17.6 224 790-1069 58-297 (650)
21 CHL00071 tufA elongation facto 100.0 6.6E-29 1.4E-33 297.0 25.7 257 794-1113 12-306 (409)
22 PRK00049 elongation factor Tu; 100.0 8.9E-29 1.9E-33 294.7 25.9 257 794-1113 12-298 (396)
23 TIGR00485 EF-Tu translation el 100.0 9E-29 2E-33 294.7 25.5 261 793-1113 11-296 (394)
24 PTZ00327 eukaryotic translatio 100.0 7.7E-29 1.7E-33 297.8 23.7 283 793-1114 33-351 (460)
25 COG0050 TufB GTPases - transla 100.0 3.4E-29 7.4E-34 272.8 18.0 257 796-1115 14-298 (394)
26 KOG0460 Mitochondrial translat 100.0 2.7E-29 5.8E-34 278.0 16.2 258 795-1115 55-342 (449)
27 TIGR01394 TypA_BipA GTP-bindin 100.0 1.5E-28 3.2E-33 304.1 24.0 225 792-1067 1-252 (594)
28 TIGR00483 EF-1_alpha translati 100.0 2.1E-28 4.6E-33 294.4 23.2 258 795-1113 8-311 (426)
29 COG1217 TypA Predicted membran 100.0 3.5E-28 7.7E-33 277.9 21.2 259 790-1109 3-289 (603)
30 COG3276 SelB Selenocysteine-sp 100.0 5.2E-28 1.1E-32 278.9 21.7 248 796-1114 2-256 (447)
31 PRK10218 GTP-binding protein; 100.0 2.5E-27 5.5E-32 292.9 23.4 258 790-1108 3-288 (607)
32 COG0481 LepA Membrane GTPase L 100.0 1.7E-27 3.6E-32 273.3 18.9 213 789-1055 6-234 (603)
33 TIGR02034 CysN sulfate adenyly 99.9 7.2E-27 1.6E-31 279.2 21.4 254 796-1114 2-300 (406)
34 TIGR03680 eif2g_arch translati 99.9 2E-26 4.4E-31 275.4 22.9 280 794-1113 4-312 (406)
35 PRK05433 GTP-binding protein L 99.9 2.9E-26 6.2E-31 284.8 22.9 213 790-1055 5-232 (600)
36 TIGR01393 lepA GTP-binding pro 99.9 4.6E-26 9.9E-31 282.7 23.8 212 791-1055 2-228 (595)
37 PRK05124 cysN sulfate adenylyl 99.9 6.1E-26 1.3E-30 275.4 23.4 256 795-1114 28-328 (474)
38 COG5258 GTPBP1 GTPase [General 99.9 3.6E-26 7.7E-31 256.3 19.1 282 794-1113 117-436 (527)
39 PRK04000 translation initiatio 99.9 1E-25 2.2E-30 269.4 23.1 280 794-1113 9-317 (411)
40 COG0480 FusA Translation elong 99.9 5.2E-25 1.1E-29 273.8 23.8 288 789-1112 7-392 (697)
41 KOG0458 Elongation factor 1 al 99.9 6.1E-25 1.3E-29 259.2 22.6 227 793-1066 176-453 (603)
42 PF00009 GTP_EFTU: Elongation 99.9 9.2E-26 2E-30 242.2 14.0 165 795-1004 4-187 (188)
43 COG2895 CysN GTPases - Sulfate 99.9 2E-25 4.4E-30 249.3 16.4 225 796-1069 8-274 (431)
44 PRK05506 bifunctional sulfate 99.9 5E-25 1.1E-29 277.0 21.3 271 795-1114 25-324 (632)
45 PRK00007 elongation factor G; 99.9 6.5E-24 1.4E-28 269.0 24.7 240 788-1052 6-345 (693)
46 PRK13351 elongation factor G; 99.9 1.2E-23 2.6E-28 267.2 26.3 242 789-1055 5-344 (687)
47 PRK12739 elongation factor G; 99.9 1E-23 2.2E-28 267.3 24.2 240 789-1053 5-343 (691)
48 TIGR00484 EF-G translation elo 99.9 2.5E-23 5.3E-28 264.0 26.7 240 788-1052 6-343 (689)
49 KOG0461 Selenocysteine-specifi 99.9 1.5E-23 3.3E-28 232.1 18.4 242 794-1089 7-259 (522)
50 PRK07560 elongation factor EF- 99.9 1.3E-23 2.9E-28 267.6 20.8 240 788-1055 16-329 (731)
51 PRK00741 prfC peptide chain re 99.9 4E-23 8.7E-28 253.0 23.3 297 790-1109 8-377 (526)
52 KOG0468 U5 snRNP-specific prot 99.9 1.2E-23 2.7E-28 247.2 14.8 187 723-922 51-262 (971)
53 TIGR00503 prfC peptide chain r 99.9 1.9E-22 4.1E-27 247.2 25.3 295 790-1109 9-378 (527)
54 cd01884 EF_Tu EF-Tu subfamily. 99.9 5.7E-23 1.2E-27 222.5 15.2 154 795-994 3-173 (195)
55 KOG0465 Mitochondrial elongati 99.9 1.5E-22 3.3E-27 238.3 18.5 231 790-1053 37-374 (721)
56 PRK12740 elongation factor G; 99.9 1.5E-21 3.2E-26 247.6 27.1 233 800-1055 1-327 (668)
57 TIGR00490 aEF-2 translation el 99.9 3.6E-22 7.8E-27 254.0 18.6 246 789-1065 16-336 (720)
58 COG5257 GCD11 Translation init 99.9 3.6E-22 7.7E-27 220.8 15.3 224 794-1053 10-256 (415)
59 cd01887 IF2_eIF5B IF2/eIF5B (i 99.9 7.4E-22 1.6E-26 205.5 16.4 165 795-1003 1-165 (168)
60 PF11987 IF-2: Translation-ini 99.9 1.4E-22 3.1E-27 198.4 7.1 92 1137-1234 14-108 (108)
61 PLN00116 translation elongatio 99.9 3.1E-21 6.8E-26 248.8 20.4 133 788-922 15-163 (843)
62 KOG0459 Polypeptide release fa 99.9 3.6E-21 7.9E-26 218.0 14.9 279 792-1115 77-391 (501)
63 KOG0463 GTP-binding protein GP 99.9 2.2E-21 4.8E-26 216.4 12.9 280 795-1114 134-456 (641)
64 cd04166 CysN_ATPS CysN_ATPS su 99.9 1.5E-21 3.3E-26 213.2 11.4 173 797-1016 2-206 (208)
65 cd01888 eIF2_gamma eIF2-gamma 99.8 5.8E-21 1.3E-25 207.9 14.8 176 796-1004 2-199 (203)
66 cd04171 SelB SelB subfamily. 99.8 1.6E-20 3.6E-25 194.1 16.2 157 796-1000 2-162 (164)
67 cd01886 EF-G Elongation factor 99.8 1.4E-20 3.1E-25 213.5 17.0 111 796-922 1-129 (270)
68 cd04165 GTPBP1_like GTPBP1-lik 99.8 9.8E-21 2.1E-25 209.3 14.9 184 797-1001 2-220 (224)
69 cd01883 EF1_alpha Eukaryotic e 99.8 3.8E-21 8.3E-26 211.8 11.4 175 796-1014 1-215 (219)
70 cd01889 SelB_euk SelB subfamil 99.8 1.6E-20 3.5E-25 202.1 15.9 180 796-1006 2-188 (192)
71 PTZ00416 elongation factor 2; 99.8 3.2E-20 6.9E-25 239.1 21.5 127 788-922 15-157 (836)
72 cd04168 TetM_like Tet(M)-like 99.8 2.2E-20 4.8E-25 208.2 15.9 196 796-1004 1-235 (237)
73 cd01890 LepA LepA subfamily. 99.8 1.6E-20 3.4E-25 198.3 13.7 161 793-1003 1-176 (179)
74 cd01885 EF2 EF2 (for archaea a 99.8 1.7E-20 3.7E-25 206.9 13.5 120 797-922 3-138 (222)
75 KOG0464 Elongation factor G [T 99.8 5.1E-21 1.1E-25 215.3 9.2 290 785-1112 30-419 (753)
76 KOG1143 Predicted translation 99.8 2.7E-20 5.8E-25 208.0 14.3 282 796-1114 169-491 (591)
77 cd04169 RF3 RF3 subfamily. Pe 99.8 7E-20 1.5E-24 207.6 15.3 129 792-922 2-136 (267)
78 cd03703 aeIF5B_II aeIF5B_II: T 99.8 4.3E-20 9.4E-25 179.5 11.2 109 1017-1125 1-109 (110)
79 cd01891 TypA_BipA TypA (tyrosi 99.8 8.4E-20 1.8E-24 196.8 14.2 156 792-995 2-173 (194)
80 COG4108 PrfC Peptide chain rel 99.8 2.1E-19 4.5E-24 206.0 17.6 247 796-1053 14-334 (528)
81 cd00881 GTP_translation_factor 99.8 1.8E-19 3.8E-24 190.8 13.8 170 797-1004 2-187 (189)
82 COG1159 Era GTPase [General fu 99.8 1.8E-18 3.9E-23 193.0 19.2 217 791-1062 3-255 (298)
83 PRK15494 era GTPase Era; Provi 99.8 2.8E-18 6.1E-23 200.9 20.1 215 792-1063 50-300 (339)
84 cd04167 Snu114p Snu114p subfam 99.8 6.7E-19 1.5E-23 193.0 13.4 171 797-993 3-192 (213)
85 TIGR00436 era GTP-binding prot 99.8 6.4E-18 1.4E-22 192.0 21.2 211 796-1063 2-248 (270)
86 PRK00089 era GTPase Era; Revie 99.8 9.2E-18 2E-22 192.5 21.9 216 791-1063 2-253 (292)
87 cd04170 EF-G_bact Elongation f 99.8 2.5E-18 5.3E-23 195.1 16.2 125 796-922 1-129 (268)
88 cd04124 RabL2 RabL2 subfamily. 99.8 9.1E-18 2E-22 175.3 16.7 153 796-1003 2-157 (161)
89 cd01894 EngA1 EngA1 subfamily. 99.8 4.9E-18 1.1E-22 174.1 13.6 147 798-1002 1-156 (157)
90 TIGR03594 GTPase_EngA ribosome 99.8 2.3E-17 4.9E-22 199.1 20.0 162 793-1004 171-344 (429)
91 PF02421 FeoB_N: Ferrous iron 99.7 4.8E-18 1E-22 177.0 11.3 148 795-999 1-156 (156)
92 cd01864 Rab19 Rab19 subfamily. 99.7 8.3E-18 1.8E-22 175.6 13.2 158 794-1002 3-164 (165)
93 TIGR03598 GTPase_YsxC ribosome 99.7 2E-17 4.3E-22 176.1 15.5 150 791-993 15-179 (179)
94 cd01897 NOG NOG1 is a nucleola 99.7 2.7E-17 5.9E-22 171.7 15.5 152 795-1002 1-166 (168)
95 PRK00093 GTP-binding protein D 99.7 4.8E-17 1E-21 196.7 19.6 161 793-1004 172-344 (435)
96 cd04154 Arl2 Arl2 subfamily. 99.7 1.7E-17 3.6E-22 175.2 13.6 154 793-1000 13-171 (173)
97 cd04113 Rab4 Rab4 subfamily. 99.7 1.9E-17 4.2E-22 171.8 13.8 154 796-1001 2-159 (161)
98 cd04160 Arfrp1 Arfrp1 subfamil 99.7 9.1E-18 2E-22 175.1 11.2 153 797-1000 2-165 (167)
99 COG1160 Predicted GTPases [Gen 99.7 1.5E-17 3.3E-22 194.6 14.1 152 795-1004 4-165 (444)
100 cd04107 Rab32_Rab38 Rab38/Rab3 99.7 4E-17 8.6E-22 177.0 16.4 160 796-1005 2-169 (201)
101 cd01861 Rab6 Rab6 subfamily. 99.7 2.4E-17 5.3E-22 170.6 14.0 155 796-1002 2-160 (161)
102 cd04106 Rab23_lke Rab23-like s 99.7 2.6E-17 5.7E-22 170.5 14.3 156 796-1001 2-160 (162)
103 cd01895 EngA2 EngA2 subfamily. 99.7 4.3E-17 9.4E-22 169.2 15.6 161 793-1002 1-173 (174)
104 cd04138 H_N_K_Ras_like H-Ras/N 99.7 4E-17 8.7E-22 168.2 15.2 154 795-1002 2-160 (162)
105 cd04145 M_R_Ras_like M-Ras/R-R 99.7 3.4E-17 7.4E-22 169.8 14.6 156 795-1003 3-163 (164)
106 cd01862 Rab7 Rab7 subfamily. 99.7 3.9E-17 8.5E-22 170.7 14.7 158 796-1004 2-167 (172)
107 cd04119 RJL RJL (RabJ-Like) su 99.7 3.5E-17 7.7E-22 169.7 14.3 155 796-1002 2-165 (168)
108 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.7 4E-17 8.6E-22 174.6 14.9 163 794-1004 3-170 (183)
109 cd04114 Rab30 Rab30 subfamily. 99.7 4E-17 8.6E-22 170.6 14.2 158 793-1002 6-167 (169)
110 cd04120 Rab12 Rab12 subfamily. 99.7 6.5E-17 1.4E-21 176.3 16.1 157 796-1003 2-162 (202)
111 smart00175 RAB Rab subfamily o 99.7 5.7E-17 1.2E-21 167.9 15.0 156 796-1003 2-161 (164)
112 cd04126 Rab20 Rab20 subfamily. 99.7 7.5E-17 1.6E-21 178.0 16.7 201 796-1021 2-207 (220)
113 PTZ00369 Ras-like protein; Pro 99.7 6E-17 1.3E-21 173.9 15.4 163 793-1008 4-171 (189)
114 PRK03003 GTP-binding protein D 99.7 1E-16 2.2E-21 195.7 18.6 161 793-1004 210-382 (472)
115 cd01879 FeoB Ferrous iron tran 99.7 4.1E-17 8.9E-22 167.9 12.8 147 799-1002 1-155 (158)
116 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.7 5.9E-17 1.3E-21 169.2 14.1 157 795-1003 3-163 (166)
117 smart00173 RAS Ras subfamily o 99.7 8.8E-17 1.9E-21 167.1 15.2 156 796-1004 2-162 (164)
118 cd01866 Rab2 Rab2 subfamily. 99.7 7.1E-17 1.5E-21 169.6 14.6 157 795-1003 5-165 (168)
119 cd04151 Arl1 Arl1 subfamily. 99.7 5.1E-17 1.1E-21 168.7 13.3 151 797-1001 2-157 (158)
120 cd01867 Rab8_Rab10_Rab13_like 99.7 6.3E-17 1.4E-21 169.7 14.1 157 795-1003 4-164 (167)
121 cd04157 Arl6 Arl6 subfamily. 99.7 5.8E-17 1.2E-21 167.8 13.5 152 797-1000 2-160 (162)
122 cd04122 Rab14 Rab14 subfamily. 99.7 7.5E-17 1.6E-21 168.8 14.5 156 795-1002 3-162 (166)
123 cd04136 Rap_like Rap-like subf 99.7 6.5E-17 1.4E-21 167.6 13.4 155 795-1002 2-161 (163)
124 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.7 8.3E-17 1.8E-21 170.5 14.5 158 793-1003 1-163 (172)
125 cd04175 Rap1 Rap1 subgroup. T 99.7 7.7E-17 1.7E-21 168.0 14.0 156 795-1003 2-162 (164)
126 cd04116 Rab9 Rab9 subfamily. 99.7 9.7E-17 2.1E-21 168.2 14.7 155 795-1001 6-168 (170)
127 cd04127 Rab27A Rab27a subfamil 99.7 9.2E-17 2E-21 170.0 14.6 167 795-1003 5-176 (180)
128 cd00877 Ran Ran (Ras-related n 99.7 9.3E-17 2E-21 169.0 14.1 154 796-1003 2-158 (166)
129 cd01860 Rab5_related Rab5-rela 99.7 9E-17 1.9E-21 166.7 13.8 157 795-1003 2-162 (163)
130 cd01898 Obg Obg subfamily. Th 99.7 1.2E-16 2.5E-21 167.1 14.4 154 796-1002 2-169 (170)
131 PLN03071 GTP-binding nuclear p 99.7 1.6E-16 3.4E-21 175.3 16.1 159 791-1003 10-171 (219)
132 PRK04213 GTP-binding protein; 99.7 1.2E-16 2.5E-21 172.8 14.6 160 792-1004 7-192 (201)
133 KOG0467 Translation elongation 99.7 4.5E-17 9.8E-22 196.2 12.2 117 788-922 5-137 (887)
134 PRK03003 GTP-binding protein D 99.7 9.5E-17 2.1E-21 196.0 15.2 152 794-1003 38-198 (472)
135 cd01865 Rab3 Rab3 subfamily. 99.7 1.4E-16 3E-21 166.8 14.3 157 795-1003 2-162 (165)
136 cd04156 ARLTS1 ARLTS1 subfamil 99.7 8E-17 1.7E-21 166.8 12.4 153 797-1001 2-159 (160)
137 cd01863 Rab18 Rab18 subfamily. 99.7 1.2E-16 2.6E-21 165.6 13.6 154 796-1002 2-160 (161)
138 cd04144 Ras2 Ras2 subfamily. 99.7 1.3E-16 2.8E-21 171.6 14.2 155 797-1004 2-163 (190)
139 cd04140 ARHI_like ARHI subfami 99.7 1.6E-16 3.5E-21 166.3 14.4 155 795-1002 2-163 (165)
140 cd04159 Arl10_like Arl10-like 99.7 1.4E-16 3E-21 162.7 13.5 152 797-1001 2-158 (159)
141 cd04132 Rho4_like Rho4-like su 99.7 3.1E-16 6.7E-21 167.3 16.7 163 796-1005 2-168 (187)
142 cd01874 Cdc42 Cdc42 subfamily. 99.7 2.9E-16 6.2E-21 167.0 16.3 167 795-1001 2-172 (175)
143 cd00879 Sar1 Sar1 subfamily. 99.7 1.1E-16 2.5E-21 171.1 13.3 167 792-1002 17-189 (190)
144 cd04163 Era Era subfamily. Er 99.7 3.3E-16 7.1E-21 160.8 16.0 157 793-1002 2-167 (168)
145 cd01868 Rab11_like Rab11-like. 99.7 1.6E-16 3.4E-21 165.6 13.7 156 795-1002 4-163 (165)
146 TIGR03594 GTPase_EngA ribosome 99.7 9.7E-17 2.1E-21 193.6 13.9 151 796-1004 1-160 (429)
147 cd04149 Arf6 Arf6 subfamily. 99.7 1.4E-16 3.1E-21 168.0 13.5 153 794-1000 9-166 (168)
148 cd04110 Rab35 Rab35 subfamily. 99.7 1.7E-16 3.6E-21 172.1 14.1 157 795-1003 7-166 (199)
149 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.7 2E-16 4.3E-21 167.6 14.4 153 795-1001 16-173 (174)
150 cd04115 Rab33B_Rab33A Rab33B/R 99.7 2.1E-16 4.6E-21 166.3 14.3 159 793-1003 1-168 (170)
151 cd01875 RhoG RhoG subfamily. 99.7 2.5E-16 5.4E-21 169.8 15.1 171 793-1003 2-176 (191)
152 cd00878 Arf_Arl Arf (ADP-ribos 99.7 1.4E-16 3E-21 164.9 12.5 151 797-1001 2-157 (158)
153 cd04112 Rab26 Rab26 subfamily. 99.7 2.5E-16 5.4E-21 169.5 14.8 158 796-1005 2-164 (191)
154 cd04150 Arf1_5_like Arf1-Arf5- 99.7 2.5E-16 5.4E-21 164.6 14.2 151 796-1000 2-157 (159)
155 TIGR00231 small_GTP small GTP- 99.7 2.4E-16 5.1E-21 159.5 13.5 151 795-999 2-159 (161)
156 cd04176 Rap2 Rap2 subgroup. T 99.7 2.2E-16 4.7E-21 164.3 13.5 155 795-1002 2-161 (163)
157 PLN00223 ADP-ribosylation fact 99.7 3.7E-16 8.1E-21 167.2 15.5 157 793-1003 16-177 (181)
158 smart00177 ARF ARF-like small 99.7 3.8E-16 8.3E-21 165.8 15.3 156 794-1003 13-173 (175)
159 cd01878 HflX HflX subfamily. 99.7 2.3E-16 5E-21 171.1 13.6 150 794-1002 41-203 (204)
160 smart00178 SAR Sar1p-like memb 99.7 3.3E-16 7.1E-21 167.8 14.6 163 792-1001 15-182 (184)
161 PRK00454 engB GTP-binding prot 99.7 5.5E-16 1.2E-20 166.3 16.3 156 793-1003 23-193 (196)
162 cd04134 Rho3 Rho3 subfamily. 99.7 2.7E-16 5.8E-21 169.1 13.9 168 796-1003 2-173 (189)
163 smart00174 RHO Rho (Ras homolo 99.7 5.5E-16 1.2E-20 163.0 15.8 166 797-1002 1-170 (174)
164 cd04135 Tc10 TC10 subfamily. 99.7 4.3E-16 9.3E-21 163.8 15.0 166 796-1001 2-171 (174)
165 cd04123 Rab21 Rab21 subfamily. 99.7 3.3E-16 7.1E-21 161.4 13.9 155 796-1002 2-160 (162)
166 cd00154 Rab Rab family. Rab G 99.7 4.5E-16 9.7E-21 158.7 14.6 153 796-1000 2-158 (159)
167 cd04121 Rab40 Rab40 subfamily. 99.7 4.2E-16 9.2E-21 168.2 15.0 158 794-1003 6-166 (189)
168 cd04158 ARD1 ARD1 subfamily. 99.7 5.6E-16 1.2E-20 163.3 15.2 153 797-1002 2-159 (169)
169 cd04109 Rab28 Rab28 subfamily. 99.7 4.1E-16 8.9E-21 171.2 14.5 158 796-1004 2-166 (215)
170 PRK00093 GTP-binding protein D 99.7 3.3E-16 7.1E-21 189.5 14.7 149 795-1001 2-159 (435)
171 cd04164 trmE TrmE (MnmE, ThdF, 99.7 5.6E-16 1.2E-20 158.6 14.2 146 795-1003 2-156 (157)
172 cd04108 Rab36_Rab34 Rab34/Rab3 99.7 6E-16 1.3E-20 163.7 14.6 159 796-1004 2-165 (170)
173 PLN03118 Rab family protein; P 99.7 8.4E-16 1.8E-20 168.1 16.2 158 793-1003 13-176 (211)
174 cd01893 Miro1 Miro1 subfamily. 99.7 1.1E-15 2.4E-20 160.3 16.4 157 796-1002 2-162 (166)
175 cd04139 RalA_RalB RalA/RalB su 99.7 5.9E-16 1.3E-20 160.1 14.1 155 796-1003 2-161 (164)
176 COG1160 Predicted GTPases [Gen 99.7 1.1E-15 2.4E-20 179.2 17.8 163 792-1003 176-350 (444)
177 cd04142 RRP22 RRP22 subfamily. 99.7 5.7E-16 1.2E-20 168.3 14.3 156 796-1002 2-172 (198)
178 PLN03110 Rab GTPase; Provision 99.7 1E-15 2.3E-20 168.3 16.5 160 795-1006 13-176 (216)
179 cd01871 Rac1_like Rac1-like su 99.7 7.1E-16 1.5E-20 163.8 14.5 165 795-1001 2-172 (174)
180 cd04128 Spg1 Spg1p. Spg1p (se 99.7 1E-15 2.2E-20 164.0 15.7 160 796-1003 2-165 (182)
181 cd04143 Rhes_like Rhes_like su 99.7 4.7E-16 1E-20 174.6 13.7 157 796-1004 2-171 (247)
182 cd04147 Ras_dva Ras-dva subfam 99.7 6.1E-16 1.3E-20 167.5 14.1 157 797-1004 2-163 (198)
183 PTZ00133 ADP-ribosylation fact 99.7 7.4E-16 1.6E-20 164.9 14.4 159 795-1007 18-181 (182)
184 cd04101 RabL4 RabL4 (Rab-like4 99.7 7.4E-16 1.6E-20 160.2 13.9 156 796-1002 2-162 (164)
185 cd04137 RheB Rheb (Ras Homolog 99.7 8.5E-16 1.8E-20 162.8 14.3 157 796-1005 3-164 (180)
186 cd01870 RhoA_like RhoA-like su 99.7 7.4E-16 1.6E-20 162.1 13.6 168 795-1002 2-173 (175)
187 cd04155 Arl3 Arl3 subfamily. 99.7 6E-16 1.3E-20 162.5 12.9 156 792-1001 12-172 (173)
188 cd04162 Arl9_Arfrp2_like Arl9/ 99.7 3.8E-16 8.2E-21 164.1 11.1 108 797-922 2-112 (164)
189 cd00157 Rho Rho (Ras homology) 99.7 1.2E-15 2.7E-20 159.3 14.9 165 796-1001 2-170 (171)
190 cd04161 Arl2l1_Arl13_like Arl2 99.6 1E-15 2.2E-20 161.2 13.9 153 797-1000 2-165 (167)
191 cd04118 Rab24 Rab24 subfamily. 99.6 1.2E-15 2.6E-20 163.8 14.7 161 796-1004 2-166 (193)
192 PRK09518 bifunctional cytidyla 99.6 8.9E-16 1.9E-20 195.9 16.1 152 794-1003 275-435 (712)
193 cd04133 Rop_like Rop subfamily 99.6 1.7E-15 3.6E-20 161.8 15.6 166 796-1003 3-172 (176)
194 smart00176 RAN Ran (Ras-relate 99.6 9E-16 1.9E-20 167.1 13.6 150 800-1003 1-153 (200)
195 PRK15467 ethanolamine utilizat 99.6 5.5E-16 1.2E-20 162.4 11.4 143 796-1006 3-149 (158)
196 cd04125 RabA_like RabA-like su 99.6 1.7E-15 3.7E-20 162.2 15.5 159 795-1005 1-163 (188)
197 KOG0092 GTPase Rab5/YPT51 and 99.6 7.4E-16 1.6E-20 161.5 12.0 162 792-1005 3-168 (200)
198 cd04117 Rab15 Rab15 subfamily. 99.6 1.4E-15 3E-20 159.0 14.0 155 796-1002 2-160 (161)
199 COG0218 Predicted GTPase [Gene 99.6 3.1E-15 6.8E-20 159.5 16.4 161 792-1004 22-197 (200)
200 cd04146 RERG_RasL11_like RERG/ 99.6 1.3E-15 2.8E-20 159.1 13.4 154 797-1003 2-163 (165)
201 PRK09518 bifunctional cytidyla 99.6 1.6E-15 3.4E-20 193.7 16.7 160 794-1004 450-621 (712)
202 TIGR03156 GTP_HflX GTP-binding 99.6 1.1E-15 2.4E-20 179.6 13.8 148 795-1002 190-350 (351)
203 cd04111 Rab39 Rab39 subfamily. 99.6 1.8E-15 3.9E-20 165.9 14.6 161 795-1006 3-168 (211)
204 cd00880 Era_like Era (E. coli 99.6 2.2E-15 4.8E-20 152.5 14.2 154 799-1002 1-162 (163)
205 TIGR02528 EutP ethanolamine ut 99.6 9.9E-16 2.1E-20 156.0 11.5 135 796-1000 2-141 (142)
206 cd04177 RSR1 RSR1 subgroup. R 99.6 2.3E-15 5E-20 158.0 14.5 156 796-1003 3-163 (168)
207 PF00025 Arf: ADP-ribosylation 99.6 2E-15 4.3E-20 160.8 13.9 158 792-1002 12-174 (175)
208 PLN03108 Rab family protein; P 99.6 3E-15 6.6E-20 163.9 15.1 157 795-1003 7-167 (210)
209 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.6 4.9E-15 1.1E-19 159.0 16.1 167 795-1001 6-177 (182)
210 cd04131 Rnd Rnd subfamily. Th 99.6 5.1E-15 1.1E-19 158.2 16.1 166 796-1001 3-173 (178)
211 cd00876 Ras Ras family. The R 99.6 1.9E-15 4.1E-20 155.4 12.1 153 797-1002 2-159 (160)
212 cd04130 Wrch_1 Wrch-1 subfamil 99.6 3.5E-15 7.5E-20 157.6 14.1 165 796-1000 2-170 (173)
213 COG2229 Predicted GTPase [Gene 99.6 5E-15 1.1E-19 154.8 14.6 158 790-1002 6-176 (187)
214 PRK12299 obgE GTPase CgtA; Rev 99.6 6.7E-15 1.5E-19 171.9 17.4 153 797-1004 161-328 (335)
215 cd01892 Miro2 Miro2 subfamily. 99.6 2E-15 4.2E-20 159.5 11.5 159 794-1003 4-165 (169)
216 KOG0084 GTPase Rab1/YPT1, smal 99.6 4.7E-15 1E-19 156.1 13.6 164 792-1007 7-175 (205)
217 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.6 8.4E-15 1.8E-19 162.9 16.4 171 793-1003 12-187 (232)
218 KOG0469 Elongation factor 2 [T 99.6 7.4E-16 1.6E-20 177.5 7.7 132 789-922 16-163 (842)
219 cd01881 Obg_like The Obg-like 99.6 4.2E-15 9E-20 155.8 12.8 151 799-1002 1-175 (176)
220 PRK05291 trmE tRNA modificatio 99.6 3.6E-15 7.7E-20 180.9 13.8 146 794-1003 215-369 (449)
221 PRK11058 GTPase HflX; Provisio 99.6 1.3E-14 2.9E-19 174.4 18.1 152 795-1004 198-362 (426)
222 KOG0094 GTPase Rab6/YPT6/Ryh1, 99.6 9E-15 2E-19 153.3 14.2 166 789-1006 17-187 (221)
223 PRK09554 feoB ferrous iron tra 99.6 5.1E-15 1.1E-19 188.7 15.0 154 793-1003 2-167 (772)
224 KOG0466 Translation initiation 99.6 9E-16 2E-20 168.7 6.5 224 794-1053 38-295 (466)
225 KOG0394 Ras-related GTPase [Ge 99.6 3.4E-15 7.4E-20 155.0 10.3 160 795-1003 10-177 (210)
226 TIGR02729 Obg_CgtA Obg family 99.6 9.3E-15 2E-19 170.5 15.2 152 796-1003 159-328 (329)
227 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.6 8.4E-15 1.8E-19 162.0 13.9 167 796-1002 3-174 (222)
228 cd04105 SR_beta Signal recogni 99.6 1.1E-14 2.5E-19 158.8 14.7 181 795-1000 1-201 (203)
229 cd01876 YihA_EngB The YihA (En 99.6 1.9E-14 4.2E-19 148.3 15.3 153 797-1002 2-169 (170)
230 KOG1423 Ras-like GTPase ERA [C 99.6 2E-14 4.4E-19 159.3 16.2 187 789-1003 67-270 (379)
231 PRK12296 obgE GTPase CgtA; Rev 99.6 1.5E-14 3.3E-19 175.0 16.5 155 796-1005 161-341 (500)
232 PRK12298 obgE GTPase CgtA; Rev 99.6 1.7E-14 3.6E-19 171.7 15.8 158 796-1005 161-334 (390)
233 KOG0098 GTPase Rab2, small G p 99.6 1.2E-14 2.5E-19 151.3 12.0 156 795-1002 7-166 (216)
234 cd04148 RGK RGK subfamily. Th 99.6 1.8E-14 3.8E-19 159.3 14.1 155 796-1004 2-163 (221)
235 PRK12297 obgE GTPase CgtA; Rev 99.6 3.3E-14 7.1E-19 170.2 16.9 152 796-1004 160-327 (424)
236 PF00071 Ras: Ras family; Int 99.6 5.4E-14 1.2E-18 146.0 15.3 156 796-1003 1-160 (162)
237 TIGR00450 mnmE_trmE_thdF tRNA 99.6 3.4E-14 7.4E-19 171.7 15.7 149 794-1004 203-360 (442)
238 cd04129 Rho2 Rho2 subfamily. 99.6 5.7E-14 1.2E-18 150.7 15.6 165 796-1002 3-171 (187)
239 PTZ00132 GTP-binding nuclear p 99.6 5.1E-14 1.1E-18 154.4 15.5 159 791-1003 6-167 (215)
240 KOG0078 GTP-binding protein SE 99.5 3.6E-14 7.9E-19 151.5 13.6 162 792-1005 10-175 (207)
241 cd00882 Ras_like_GTPase Ras-li 99.5 3.3E-14 7.2E-19 141.7 11.5 151 799-1000 1-156 (157)
242 PF10662 PduV-EutP: Ethanolami 99.5 2.9E-14 6.3E-19 146.0 10.9 136 796-1000 3-142 (143)
243 cd04103 Centaurin_gamma Centau 99.5 8.2E-14 1.8E-18 146.0 13.7 148 796-1001 2-156 (158)
244 KOG1532 GTPase XAB1, interacts 99.5 6.4E-14 1.4E-18 153.1 11.8 198 789-1004 14-264 (366)
245 TIGR00437 feoB ferrous iron tr 99.5 7.9E-14 1.7E-18 174.0 13.1 146 801-1003 1-154 (591)
246 KOG0080 GTPase Rab18, small G 99.5 1.3E-13 2.8E-18 140.0 11.6 161 791-1003 8-173 (209)
247 cd01873 RhoBTB RhoBTB subfamil 99.5 2.9E-13 6.3E-18 146.9 14.8 122 795-922 3-133 (195)
248 KOG0093 GTPase Rab3, small G p 99.5 2.4E-13 5.1E-18 136.2 11.8 165 796-1012 23-191 (193)
249 KOG0087 GTPase Rab11/YPT3, sma 99.5 3.1E-13 6.8E-18 143.8 12.3 161 796-1008 16-180 (222)
250 KOG0073 GTP-binding ADP-ribosy 99.5 5.2E-13 1.1E-17 136.6 12.6 158 793-1003 15-177 (185)
251 KOG0079 GTP-binding protein H- 99.4 3E-13 6.5E-18 135.5 10.3 156 797-1004 11-169 (198)
252 COG0486 ThdF Predicted GTPase 99.4 4.7E-13 1E-17 157.7 13.4 150 795-1004 218-376 (454)
253 cd04104 p47_IIGP_like p47 (47- 99.4 2.5E-12 5.4E-17 139.7 17.8 177 795-1005 2-185 (197)
254 COG0370 FeoB Fe2+ transport sy 99.4 5.1E-13 1.1E-17 163.1 13.6 153 795-1004 4-164 (653)
255 KOG0095 GTPase Rab30, small G 99.4 7.8E-13 1.7E-17 132.5 12.3 157 795-1003 8-168 (213)
256 cd01896 DRG The developmentall 99.4 1.3E-12 2.7E-17 145.8 15.6 82 796-893 2-90 (233)
257 KOG0086 GTPase Rab4, small G p 99.4 7.8E-13 1.7E-17 133.1 11.6 154 796-1001 11-168 (214)
258 KOG0070 GTP-binding ADP-ribosy 99.4 5.5E-13 1.2E-17 139.8 9.4 156 795-1004 18-178 (181)
259 cd01882 BMS1 Bms1. Bms1 is an 99.4 5.6E-12 1.2E-16 139.9 17.8 123 778-922 23-146 (225)
260 COG1100 GTPase SAR1 and relate 99.4 3E-12 6.5E-17 140.0 15.0 115 795-923 6-125 (219)
261 KOG0088 GTPase Rab21, small G 99.4 8.8E-13 1.9E-17 133.5 9.2 157 794-1002 13-173 (218)
262 PF01926 MMR_HSR1: 50S ribosom 99.4 1.7E-12 3.6E-17 128.5 11.0 106 796-918 1-116 (116)
263 PRK09866 hypothetical protein; 99.4 7E-12 1.5E-16 152.4 17.2 114 857-1001 230-350 (741)
264 cd04102 RabL3 RabL3 (Rab-like3 99.4 3.3E-12 7.1E-17 139.5 11.9 118 796-922 2-142 (202)
265 KOG0075 GTP-binding ADP-ribosy 99.3 1.9E-12 4E-17 130.0 8.5 154 797-1003 23-181 (186)
266 KOG0076 GTP-binding ADP-ribosy 99.3 2.9E-12 6.3E-17 132.4 8.9 162 796-1005 19-188 (197)
267 COG1084 Predicted GTPase [Gene 99.3 1.1E-11 2.4E-16 140.1 14.2 157 793-1004 167-336 (346)
268 PLN00023 GTP-binding protein; 99.3 5E-12 1.1E-16 145.4 11.7 131 791-922 18-164 (334)
269 COG3596 Predicted GTPase [Gene 99.3 7.1E-12 1.5E-16 138.8 12.3 175 791-1004 36-222 (296)
270 COG2262 HflX GTPases [General 99.3 1.7E-11 3.6E-16 142.5 12.2 153 793-1005 191-357 (411)
271 cd01852 AIG1 AIG1 (avrRpt2-ind 99.3 5.8E-11 1.2E-15 128.7 15.2 111 796-923 2-130 (196)
272 PF08477 Miro: Miro-like prote 99.3 8.6E-12 1.9E-16 123.2 7.7 109 796-920 1-119 (119)
273 KOG1489 Predicted GTP-binding 99.3 3E-11 6.5E-16 135.4 12.7 148 797-1001 199-364 (366)
274 KOG0395 Ras-related GTPase [Ge 99.3 1.7E-11 3.6E-16 133.3 10.4 160 793-1005 2-166 (196)
275 PRK13768 GTPase; Provisional 99.3 3.7E-11 8E-16 135.7 13.2 127 857-1003 97-246 (253)
276 KOG0097 GTPase Rab14, small G 99.3 2.7E-11 5.9E-16 120.4 10.4 151 797-999 14-168 (215)
277 COG5192 BMS1 GTP-binding prote 99.2 1.8E-10 3.8E-15 134.9 18.3 238 776-1070 50-306 (1077)
278 cd01850 CDC_Septin CDC/Septin. 99.2 6.6E-11 1.4E-15 135.3 14.3 113 795-922 5-156 (276)
279 KOG0091 GTPase Rab39, small G 99.2 4.3E-11 9.2E-16 122.2 11.1 160 796-1006 10-175 (213)
280 PF09439 SRPRB: Signal recogni 99.2 3.2E-11 6.9E-16 128.9 10.0 113 793-923 2-126 (181)
281 COG0536 Obg Predicted GTPase [ 99.2 1.2E-10 2.6E-15 132.3 13.8 157 797-1007 162-336 (369)
282 KOG0081 GTPase Rab27, small G 99.2 1.6E-11 3.4E-16 124.5 6.1 170 797-1009 12-186 (219)
283 cd01899 Ygr210 Ygr210 subfamil 99.2 1.7E-10 3.7E-15 134.1 14.8 95 797-891 1-110 (318)
284 PTZ00099 rab6; Provisional 99.2 8.7E-11 1.9E-15 125.6 11.2 109 858-1004 30-142 (176)
285 KOG0071 GTP-binding ADP-ribosy 99.2 1E-10 2.2E-15 116.9 10.3 152 796-1003 19-177 (180)
286 KOG0072 GTP-binding ADP-ribosy 99.2 6.5E-11 1.4E-15 118.8 7.7 158 793-1004 17-179 (182)
287 PF03029 ATP_bind_1: Conserved 99.1 7.9E-11 1.7E-15 131.8 9.1 132 858-1003 92-236 (238)
288 KOG0074 GTP-binding ADP-ribosy 99.1 8.5E-11 1.8E-15 117.5 8.0 157 792-1001 15-176 (185)
289 KOG1144 Translation initiation 99.1 5.8E-10 1.3E-14 134.6 16.4 124 508-632 203-329 (1064)
290 KOG0090 Signal recognition par 99.1 3.8E-10 8.3E-15 120.7 12.6 176 795-1001 39-236 (238)
291 KOG1191 Mitochondrial GTPase [ 99.1 3.1E-10 6.7E-15 133.7 11.8 159 794-1003 268-449 (531)
292 PRK09435 membrane ATPase/prote 99.1 5.5E-10 1.2E-14 130.2 13.6 114 855-1004 147-260 (332)
293 TIGR00073 hypB hydrogenase acc 99.1 5E-10 1.1E-14 122.7 10.4 167 793-1002 21-205 (207)
294 KOG0083 GTPase Rab26/Rab37, sm 99.0 1.2E-10 2.5E-15 115.1 3.3 153 799-1002 2-158 (192)
295 PRK09602 translation-associate 99.0 2.2E-09 4.8E-14 128.4 14.5 97 795-891 2-113 (396)
296 smart00053 DYNc Dynamin, GTPas 99.0 2.2E-09 4.9E-14 120.0 13.1 132 791-922 23-205 (240)
297 KOG0393 Ras-related small GTPa 99.0 6.3E-10 1.4E-14 119.7 8.2 172 792-1002 2-177 (198)
298 KOG4252 GTP-binding protein [S 99.0 1E-09 2.2E-14 113.6 8.4 208 791-1053 17-228 (246)
299 COG1163 DRG Predicted GTPase [ 99.0 2.6E-09 5.7E-14 120.6 12.0 190 795-1003 64-288 (365)
300 TIGR00750 lao LAO/AO transport 99.0 4E-09 8.6E-14 122.2 12.9 114 854-1003 124-237 (300)
301 PF05049 IIGP: Interferon-indu 98.9 1.2E-08 2.6E-13 120.0 14.8 171 795-1005 36-219 (376)
302 COG4917 EutP Ethanolamine util 98.9 2.9E-09 6.2E-14 105.1 8.0 137 796-1001 3-143 (148)
303 KOG0410 Predicted GTP binding 98.9 6.5E-09 1.4E-13 116.9 11.9 148 791-1002 175-339 (410)
304 PF00350 Dynamin_N: Dynamin fa 98.9 4.9E-09 1.1E-13 110.1 9.7 64 856-919 100-168 (168)
305 KOG0077 Vesicle coat complex C 98.9 2.5E-09 5.4E-14 110.1 6.9 110 795-923 21-135 (193)
306 KOG2486 Predicted GTPase [Gene 98.9 1.5E-09 3.2E-14 120.2 5.5 166 792-1003 134-315 (320)
307 cd03702 IF2_mtIF2_II This fami 98.9 9.4E-09 2E-13 99.0 9.8 89 1018-1122 2-91 (95)
308 PF04670 Gtr1_RagA: Gtr1/RagA 98.9 4.8E-08 1E-12 108.8 16.2 150 796-989 1-162 (232)
309 KOG1490 GTP-binding protein CR 98.9 3.9E-09 8.5E-14 124.1 7.8 155 795-1001 169-338 (620)
310 TIGR00101 ureG urease accessor 98.8 1.1E-08 2.3E-13 111.8 10.5 102 856-1002 91-194 (199)
311 cd01853 Toc34_like Toc34-like 98.8 6.6E-08 1.4E-12 109.1 15.8 116 791-922 28-162 (249)
312 PTZ00258 GTP-binding protein; 98.8 5.5E-08 1.2E-12 115.6 15.3 99 792-891 19-126 (390)
313 TIGR00991 3a0901s02IAP34 GTP-b 98.8 1.8E-07 3.8E-12 107.7 17.9 115 792-922 36-166 (313)
314 PRK10463 hydrogenase nickel in 98.7 2.5E-08 5.5E-13 113.8 9.1 167 792-1001 102-286 (290)
315 PF03308 ArgK: ArgK protein; 98.7 3.3E-08 7.3E-13 110.1 8.1 173 792-1004 27-230 (266)
316 cd03701 IF2_IF5B_II IF2_IF5B_I 98.7 8.4E-08 1.8E-12 92.6 9.7 88 1018-1122 2-91 (95)
317 PF00735 Septin: Septin; Inte 98.7 1.7E-07 3.7E-12 107.6 13.4 137 795-965 5-177 (281)
318 COG1703 ArgK Putative periplas 98.7 1.3E-07 2.9E-12 106.5 11.6 177 791-1004 48-254 (323)
319 KOG1707 Predicted Ras related/ 98.6 4.8E-08 1E-12 117.3 8.5 118 791-924 6-130 (625)
320 COG0378 HypB Ni2+-binding GTPa 98.6 4.2E-08 9E-13 104.7 6.7 163 795-1002 14-199 (202)
321 KOG0096 GTPase Ran/TC4/GSP1 (n 98.6 9E-08 2E-12 100.9 9.0 155 794-1002 10-167 (216)
322 PF04548 AIG1: AIG1 family; I 98.6 4.7E-07 1E-11 99.8 14.2 110 796-922 2-129 (212)
323 KOG3883 Ras family small GTPas 98.6 5E-07 1.1E-11 92.1 12.1 117 793-922 8-131 (198)
324 KOG1954 Endocytosis/signaling 98.6 5.7E-07 1.2E-11 102.6 13.5 135 788-922 52-224 (532)
325 TIGR02836 spore_IV_A stage IV 98.5 2.9E-07 6.3E-12 108.0 11.0 121 795-921 18-192 (492)
326 COG5019 CDC3 Septin family pro 98.5 5.9E-07 1.3E-11 103.9 12.6 115 793-922 22-175 (373)
327 PF14578 GTP_EFTU_D4: Elongati 98.5 2.3E-07 5E-12 86.3 5.6 60 1252-1323 2-61 (81)
328 cd01859 MJ1464 MJ1464. This f 98.4 8.4E-07 1.8E-11 92.6 9.3 95 870-1004 2-96 (156)
329 KOG4423 GTP-binding protein-li 98.4 6.4E-08 1.4E-12 101.4 0.9 157 797-1002 28-192 (229)
330 cd03692 mtIF2_IVc mtIF2_IVc: t 98.4 1.2E-06 2.5E-11 82.9 7.9 56 1264-1323 8-64 (84)
331 PRK14974 cell division protein 98.3 1.1E-06 2.4E-11 103.0 9.1 65 856-922 222-292 (336)
332 KOG1673 Ras GTPases [General f 98.3 2.9E-06 6.3E-11 86.8 9.9 168 787-1001 13-183 (205)
333 PRK09601 GTP-binding protein Y 98.3 1.9E-06 4.1E-11 101.7 9.1 96 795-891 3-107 (364)
334 cd01900 YchF YchF subfamily. 98.3 9.4E-07 2E-11 101.0 6.3 94 797-891 1-103 (274)
335 PRK14722 flhF flagellar biosyn 98.3 2.2E-06 4.8E-11 101.6 9.6 130 793-922 136-294 (374)
336 KOG0052 Translation elongation 98.3 4.3E-07 9.3E-12 105.7 2.9 66 857-922 82-155 (391)
337 TIGR00157 ribosome small subun 98.2 2.5E-06 5.5E-11 96.2 9.0 96 867-1001 23-120 (245)
338 PRK10416 signal recognition pa 98.2 3.5E-06 7.5E-11 98.5 10.2 66 855-922 195-272 (318)
339 KOG1487 GTP-binding protein DR 98.2 4.1E-06 8.9E-11 92.2 8.5 81 796-894 61-150 (358)
340 cd01855 YqeH YqeH. YqeH is an 98.2 3.9E-06 8.4E-11 90.6 8.2 104 865-1003 19-124 (190)
341 TIGR00064 ftsY signal recognit 98.2 4.6E-06 1E-10 95.5 9.2 65 855-922 153-230 (272)
342 KOG2655 Septin family protein 98.2 1E-05 2.2E-10 94.5 11.6 115 795-922 22-171 (366)
343 cd03112 CobW_like The function 98.2 6.9E-06 1.5E-10 86.6 9.2 63 856-921 86-158 (158)
344 KOG1547 Septin CDC10 and relat 98.1 1.7E-05 3.7E-10 86.6 11.6 115 795-922 47-197 (336)
345 TIGR01425 SRP54_euk signal rec 98.1 8.2E-06 1.8E-10 98.3 10.2 65 856-922 182-252 (429)
346 TIGR00993 3a0901s04IAP86 chlor 98.1 1.1E-05 2.5E-10 99.6 11.3 112 795-923 119-250 (763)
347 PF05783 DLIC: Dynein light in 98.1 4.6E-05 1E-09 93.1 16.3 85 794-893 25-113 (472)
348 KOG1486 GTP-binding protein DR 98.1 2.5E-05 5.4E-10 85.8 11.7 82 796-893 64-152 (364)
349 cd01858 NGP_1 NGP-1. Autoanti 98.1 7.5E-06 1.6E-10 85.8 7.1 55 794-867 102-157 (157)
350 KOG3905 Dynein light intermedi 98.1 8E-05 1.7E-09 84.4 15.4 66 909-1001 222-287 (473)
351 cd01858 NGP_1 NGP-1. Autoanti 98.0 1.6E-05 3.4E-10 83.4 9.3 89 876-1003 4-94 (157)
352 PRK12289 GTPase RsgA; Reviewed 98.0 1.7E-05 3.6E-10 94.0 10.4 87 876-1002 85-173 (352)
353 cd04178 Nucleostemin_like Nucl 98.0 7.8E-06 1.7E-10 87.5 7.0 56 793-867 116-172 (172)
354 COG0012 Predicted GTPase, prob 98.0 1.2E-05 2.6E-10 93.8 7.9 99 794-892 2-109 (372)
355 cd01849 YlqF_related_GTPase Yl 98.0 4.8E-05 1E-09 79.6 11.7 83 882-1003 1-84 (155)
356 cd03693 EF1_alpha_II EF1_alpha 98.0 2.8E-05 6.1E-10 74.6 9.1 84 1015-1114 3-89 (91)
357 PRK11889 flhF flagellar biosyn 98.0 4.2E-05 9.2E-10 90.6 12.1 64 857-922 321-390 (436)
358 cd01856 YlqF YlqF. Proteins o 98.0 1.9E-05 4.1E-10 84.1 8.4 99 864-1004 2-101 (171)
359 PRK00771 signal recognition pa 98.0 2.7E-05 5.8E-10 94.5 10.6 63 857-922 176-245 (437)
360 PF00448 SRP54: SRP54-type pro 98.0 2.9E-05 6.3E-10 84.9 9.5 64 857-922 84-153 (196)
361 PRK12726 flagellar biosynthesi 97.9 4E-05 8.8E-10 90.5 11.0 25 792-816 204-228 (407)
362 cd00066 G-alpha G protein alph 97.9 2.7E-05 5.8E-10 91.3 8.9 67 856-922 160-241 (317)
363 PRK12727 flagellar biosynthesi 97.9 4.6E-05 9.9E-10 93.3 10.9 126 793-922 349-497 (559)
364 PRK00098 GTPase RsgA; Reviewed 97.9 4.8E-05 1E-09 88.4 10.6 84 878-1000 78-163 (298)
365 TIGR03596 GTPase_YlqF ribosome 97.9 3E-05 6.5E-10 89.1 8.8 99 865-1005 5-104 (276)
366 cd01857 HSR1_MMR1 HSR1/MMR1. 97.9 2.2E-05 4.7E-10 80.9 6.6 53 796-867 85-138 (141)
367 cd01849 YlqF_related_GTPase Yl 97.9 2.4E-05 5.2E-10 81.9 6.9 56 793-867 99-155 (155)
368 COG0523 Putative GTPases (G3E 97.8 0.0001 2.2E-09 86.3 12.2 124 795-923 2-159 (323)
369 cd01851 GBP Guanylate-binding 97.8 5E-05 1.1E-09 84.7 8.8 84 796-892 9-103 (224)
370 cd01855 YqeH YqeH. YqeH is an 97.8 3E-05 6.5E-10 83.8 6.4 54 795-867 128-190 (190)
371 cd03694 GTPBP_II Domain II of 97.8 8.4E-05 1.8E-09 70.7 8.4 82 1017-1111 1-86 (87)
372 cd01857 HSR1_MMR1 HSR1/MMR1. 97.8 5.3E-05 1.2E-09 78.0 7.7 49 874-922 5-55 (141)
373 PRK09563 rbgA GTPase YlqF; Rev 97.8 4.3E-05 9.2E-10 88.3 7.4 56 793-867 120-176 (287)
374 PRK10867 signal recognition pa 97.8 8.3E-05 1.8E-09 90.2 10.1 64 856-922 183-253 (433)
375 cd03115 SRP The signal recogni 97.7 9.4E-05 2E-09 78.6 9.1 64 856-922 82-152 (173)
376 PRK09563 rbgA GTPase YlqF; Rev 97.7 6.2E-05 1.4E-09 87.0 8.2 101 863-1005 6-107 (287)
377 PF02492 cobW: CobW/HypB/UreG, 97.7 4.8E-05 1E-09 81.7 6.8 125 795-922 1-154 (178)
378 PF03193 DUF258: Protein of un 97.7 2E-05 4.3E-10 83.2 3.7 27 792-818 33-59 (161)
379 PRK12288 GTPase RsgA; Reviewed 97.7 0.00025 5.4E-09 84.0 13.2 87 878-1001 118-205 (347)
380 TIGR00959 ffh signal recogniti 97.7 0.00011 2.5E-09 88.9 10.5 63 856-921 182-251 (428)
381 TIGR03596 GTPase_YlqF ribosome 97.7 5.8E-05 1.3E-09 86.7 7.6 56 793-867 117-173 (276)
382 PRK12724 flagellar biosynthesi 97.7 0.00018 4E-09 86.2 11.8 128 792-922 221-372 (432)
383 cd03114 ArgK-like The function 97.7 7.4E-05 1.6E-09 78.1 7.4 58 856-920 91-148 (148)
384 TIGR03597 GTPase_YqeH ribosome 97.7 2.7E-05 6E-10 92.7 4.7 108 796-922 156-279 (360)
385 cd03697 EFTU_II EFTU_II: Elong 97.7 0.00011 2.4E-09 69.9 7.8 83 1017-1113 1-86 (87)
386 cd01856 YlqF YlqF. Proteins o 97.7 7.5E-05 1.6E-09 79.5 7.4 56 793-867 114-170 (171)
387 PRK14721 flhF flagellar biosyn 97.7 0.00034 7.3E-09 84.6 13.6 127 793-922 190-339 (420)
388 TIGR03348 VI_IcmF type VI secr 97.7 0.00018 4E-09 97.5 12.6 118 791-924 108-258 (1169)
389 PRK12723 flagellar biosynthesi 97.7 0.00041 8.8E-09 83.3 13.5 66 855-922 253-325 (388)
390 PRK06731 flhF flagellar biosyn 97.6 0.00031 6.6E-09 80.5 11.7 128 793-922 74-224 (270)
391 KOG0448 Mitofusin 1 GTPase, in 97.6 0.0003 6.5E-09 86.8 12.1 130 793-922 108-274 (749)
392 PRK05703 flhF flagellar biosyn 97.6 0.00028 6.1E-09 85.8 12.0 65 856-922 299-370 (424)
393 TIGR00092 GTP-binding protein 97.6 0.00012 2.7E-09 86.6 7.9 97 795-892 3-109 (368)
394 cd03698 eRF3_II_like eRF3_II_l 97.6 0.00027 5.9E-09 66.5 8.5 79 1016-1111 1-82 (83)
395 KOG3886 GTP-binding protein [S 97.6 0.00015 3.3E-09 79.1 7.5 113 795-922 5-129 (295)
396 PRK01889 GTPase RsgA; Reviewed 97.6 0.00023 4.9E-09 84.8 9.5 82 878-999 110-192 (356)
397 PRK14723 flhF flagellar biosyn 97.5 0.00031 6.6E-09 89.8 11.0 126 794-922 185-336 (767)
398 PRK06995 flhF flagellar biosyn 97.5 0.00044 9.5E-09 84.8 11.9 25 793-817 255-279 (484)
399 TIGR02475 CobW cobalamin biosy 97.5 0.00071 1.5E-08 80.2 13.0 25 793-817 3-27 (341)
400 PRK11537 putative GTP-binding 97.5 0.00054 1.2E-08 80.4 11.3 127 793-922 3-163 (318)
401 PTZ00121 MAEBL; Provisional 97.5 0.00067 1.5E-08 88.0 12.6 22 26-47 997-1018(2084)
402 COG1161 Predicted GTPases [Gen 97.5 0.00015 3.3E-09 85.1 6.6 57 792-867 130-187 (322)
403 PRK12288 GTPase RsgA; Reviewed 97.5 0.00012 2.6E-09 86.8 5.7 24 795-818 206-229 (347)
404 TIGR03597 GTPase_YqeH ribosome 97.5 0.00034 7.4E-09 83.5 9.5 102 867-1002 50-151 (360)
405 PRK12289 GTPase RsgA; Reviewed 97.5 0.00015 3.2E-09 86.0 6.3 26 793-818 171-196 (352)
406 KOG3859 Septins (P-loop GTPase 97.4 0.0003 6.6E-09 78.4 7.8 137 793-965 41-211 (406)
407 cd01854 YjeQ_engC YjeQ/EngC. 97.4 0.00045 9.8E-09 79.9 8.9 83 878-1000 76-160 (287)
408 cd01859 MJ1464 MJ1464. This f 97.4 0.00035 7.6E-09 73.0 7.2 55 794-867 101-156 (156)
409 cd03110 Fer4_NifH_child This p 97.4 0.0011 2.5E-08 70.7 11.2 66 855-922 91-156 (179)
410 cd04089 eRF3_II eRF3_II: domai 97.4 0.00082 1.8E-08 63.2 8.6 78 1016-1111 1-81 (82)
411 KOG3887 Predicted small GTPase 97.3 0.00094 2E-08 73.4 9.7 113 795-922 28-148 (347)
412 KOG0447 Dynamin-like GTP bindi 97.3 0.0028 6.1E-08 76.0 14.3 64 857-922 412-492 (980)
413 smart00275 G_alpha G protein a 97.3 0.00075 1.6E-08 80.0 9.8 135 856-1002 183-332 (342)
414 cd03696 selB_II selB_II: this 97.3 0.0012 2.6E-08 62.1 8.7 69 1017-1101 1-72 (83)
415 KOG1491 Predicted GTP-binding 97.3 0.00055 1.2E-08 78.8 7.4 99 794-892 20-126 (391)
416 COG1419 FlhF Flagellar GTP-bin 97.2 0.0014 2.9E-08 78.1 10.7 126 794-922 203-351 (407)
417 KOG1424 Predicted GTP-binding 97.2 0.0002 4.3E-09 86.0 3.7 69 795-884 315-386 (562)
418 TIGR00157 ribosome small subun 97.2 0.0004 8.7E-09 78.6 6.0 26 793-818 119-144 (245)
419 KOG1534 Putative transcription 97.2 0.00099 2.2E-08 72.1 8.5 66 858-923 99-178 (273)
420 COG1162 Predicted GTPases [Gen 97.2 0.0004 8.7E-09 79.7 5.7 27 791-817 161-187 (301)
421 smart00010 small_GTPase Small 97.1 0.00089 1.9E-08 66.0 6.6 87 796-922 2-90 (124)
422 cd01854 YjeQ_engC YjeQ/EngC. 97.1 0.0006 1.3E-08 78.9 6.1 28 792-819 159-186 (287)
423 cd02038 FleN-like FleN is a me 97.1 0.0023 5.1E-08 66.0 9.8 63 857-921 45-109 (139)
424 KOG0066 eIF2-interacting prote 97.1 0.00037 8.1E-09 81.6 4.2 51 856-906 430-483 (807)
425 PRK00098 GTPase RsgA; Reviewed 97.1 0.00069 1.5E-08 78.8 6.3 27 792-818 162-188 (298)
426 COG3523 IcmF Type VI protein s 97.1 0.0025 5.4E-08 84.7 11.6 118 792-925 123-272 (1188)
427 PRK13796 GTPase YqeH; Provisio 97.1 0.00065 1.4E-08 81.2 5.8 55 795-868 161-221 (365)
428 KOG2485 Conserved ATP/GTP bind 97.0 0.0012 2.7E-08 75.4 7.1 57 795-867 144-206 (335)
429 KOG0082 G-protein alpha subuni 97.0 0.0011 2.4E-08 77.8 6.9 70 853-922 191-275 (354)
430 cd02036 MinD Bacterial cell di 97.0 0.0019 4.1E-08 68.4 8.1 63 858-922 64-127 (179)
431 cd03695 CysN_NodQ_II CysN_NodQ 96.9 0.0044 9.5E-08 58.3 8.5 66 1017-1098 1-69 (81)
432 cd02037 MRP-like MRP (Multiple 96.8 0.0053 1.2E-07 65.1 9.8 68 855-922 66-134 (169)
433 COG0541 Ffh Signal recognition 96.8 0.0027 5.9E-08 75.7 8.0 126 793-921 99-251 (451)
434 COG3640 CooC CO dehydrogenase 96.8 0.0026 5.6E-08 70.5 7.2 62 857-921 134-197 (255)
435 PRK13695 putative NTPase; Prov 96.7 0.0036 7.7E-08 66.9 7.5 43 876-920 92-137 (174)
436 PRK13796 GTPase YqeH; Provisio 96.7 0.0063 1.4E-07 72.9 9.7 99 869-1002 58-157 (365)
437 cd03111 CpaE_like This protein 96.6 0.0064 1.4E-07 59.9 7.5 59 858-918 44-106 (106)
438 COG0552 FtsY Signal recognitio 96.6 0.0062 1.3E-07 70.8 8.4 26 791-816 136-161 (340)
439 KOG2743 Cobalamin synthesis pr 96.5 0.11 2.4E-06 59.4 17.5 31 787-817 50-80 (391)
440 cd01983 Fer4_NifH The Fer4_Nif 96.5 0.0073 1.6E-07 56.5 7.3 94 796-917 1-99 (99)
441 KOG1707 Predicted Ras related/ 96.4 0.014 3.1E-07 71.6 10.7 111 796-922 427-539 (625)
442 cd02042 ParA ParA and ParB of 96.4 0.0094 2E-07 57.8 7.4 73 796-893 1-74 (104)
443 cd04178 Nucleostemin_like Nucl 96.3 0.0084 1.8E-07 64.4 7.0 41 882-922 1-43 (172)
444 PRK13849 putative crown gall t 96.3 0.0059 1.3E-07 68.6 5.9 63 856-920 83-151 (231)
445 PHA02518 ParA-like protein; Pr 96.2 0.024 5.1E-07 61.8 10.2 64 856-921 76-145 (211)
446 KOG1029 Endocytic adaptor prot 96.2 0.047 1E-06 68.0 13.3 60 512-571 357-418 (1118)
447 COG1162 Predicted GTPases [Gen 96.2 0.018 3.9E-07 66.5 9.3 122 879-1039 78-212 (301)
448 cd03691 BipA_TypA_II BipA_TypA 96.2 0.028 6E-07 53.1 8.9 83 1017-1108 1-84 (86)
449 KOG1029 Endocytic adaptor prot 96.2 0.038 8.3E-07 68.8 12.2 11 1042-1052 924-934 (1118)
450 KOG2484 GTPase [General functi 96.1 0.0045 9.7E-08 72.8 4.2 60 790-868 248-308 (435)
451 PF03205 MobB: Molybdopterin g 96.1 0.003 6.4E-08 65.6 2.4 23 795-817 1-23 (140)
452 PF13401 AAA_22: AAA domain; P 96.1 0.004 8.7E-08 62.5 3.3 118 795-918 5-125 (131)
453 KOG4181 Uncharacterized conser 96.1 0.012 2.6E-07 67.9 7.0 25 794-818 188-212 (491)
454 PF03144 GTP_EFTU_D2: Elongati 96.0 0.016 3.6E-07 52.9 6.4 69 1031-1108 1-73 (74)
455 PF09547 Spore_IV_A: Stage IV 95.9 0.046 1E-06 65.4 11.1 22 795-816 18-39 (492)
456 cd03690 Tet_II Tet_II: This su 95.9 0.028 6.2E-07 53.3 7.7 81 1015-1108 2-83 (85)
457 TIGR01969 minD_arch cell divis 95.9 0.023 5E-07 63.7 8.4 64 856-921 108-172 (251)
458 PTZ00266 NIMA-related protein 95.9 0.056 1.2E-06 71.8 12.9 29 1200-1228 978-1007(1021)
459 KOG0781 Signal recognition par 95.8 0.022 4.7E-07 68.4 7.8 128 792-923 376-544 (587)
460 cd01342 Translation_Factor_II_ 95.7 0.066 1.4E-06 48.2 9.2 49 1018-1066 2-50 (83)
461 KOG0163 Myosin class VI heavy 95.7 0.094 2E-06 65.2 12.5 16 906-921 1188-1203(1259)
462 cd03688 eIF2_gamma_II eIF2_gam 95.6 0.06 1.3E-06 53.5 8.8 39 1014-1052 3-49 (113)
463 smart00382 AAA ATPases associa 95.6 0.063 1.4E-06 52.8 9.3 25 794-818 2-26 (148)
464 TIGR03499 FlhF flagellar biosy 95.6 0.011 2.4E-07 68.3 4.3 25 793-817 193-217 (282)
465 KOG1533 Predicted GTPase [Gene 95.5 0.024 5.2E-07 62.7 6.3 67 857-923 97-177 (290)
466 PRK10751 molybdopterin-guanine 95.5 0.037 7.9E-07 59.6 7.6 26 792-817 4-29 (173)
467 KOG0780 Signal recognition par 95.5 0.032 7E-07 65.6 7.5 29 787-815 94-122 (483)
468 cd02032 Bchl_like This family 95.4 0.07 1.5E-06 60.9 10.1 65 856-921 115-184 (267)
469 KOG0163 Myosin class VI heavy 95.4 0.11 2.5E-06 64.5 12.0 8 885-892 1194-1201(1259)
470 PF00503 G-alpha: G-protein al 95.4 0.025 5.4E-07 68.4 6.6 66 857-922 236-316 (389)
471 cd01120 RecA-like_NTPases RecA 95.3 0.034 7.4E-07 57.1 6.3 23 796-818 1-23 (165)
472 COG1618 Predicted nucleotide k 95.3 0.22 4.8E-06 52.7 12.0 21 796-816 7-27 (179)
473 PRK01889 GTPase RsgA; Reviewed 95.3 0.016 3.6E-07 69.2 4.4 24 795-818 196-219 (356)
474 cd04088 EFG_mtEFG_II EFG_mtEFG 95.2 0.067 1.5E-06 50.1 7.5 80 1018-1108 2-81 (83)
475 KOG0446 Vacuolar sorting prote 95.1 0.027 5.8E-07 72.0 5.9 134 789-923 24-213 (657)
476 PF13671 AAA_33: AAA domain; P 95.1 0.016 3.5E-07 59.1 3.3 21 796-816 1-21 (143)
477 PF07015 VirC1: VirC1 protein; 94.9 0.052 1.1E-06 60.7 6.8 63 857-921 84-152 (231)
478 PRK08099 bifunctional DNA-bind 94.8 0.085 1.8E-06 64.0 8.8 23 795-817 220-242 (399)
479 PF05621 TniB: Bacterial TniB 94.8 0.066 1.4E-06 62.1 7.4 102 789-918 56-189 (302)
480 TIGR01281 DPOR_bchL light-inde 94.8 0.14 3E-06 58.5 10.0 65 856-921 115-184 (268)
481 PF01656 CbiA: CobQ/CobB/MinD/ 94.8 0.031 6.8E-07 59.9 4.5 64 857-922 95-161 (195)
482 cd04092 mtEFG2_II_like mtEFG2_ 94.7 0.1 2.2E-06 49.1 7.3 79 1018-1108 2-81 (83)
483 PF03266 NTPase_1: NTPase; In 94.7 0.014 2.9E-07 62.6 1.6 39 879-919 94-135 (168)
484 cd02117 NifH_like This family 94.7 0.13 2.8E-06 56.8 9.2 66 856-921 116-187 (212)
485 TIGR01005 eps_transp_fam exopo 94.7 0.088 1.9E-06 69.1 9.2 65 856-921 655-720 (754)
486 KOG2423 Nucleolar GTPase [Gene 94.6 0.02 4.4E-07 67.1 2.8 28 793-820 306-333 (572)
487 TIGR03371 cellulose_yhjQ cellu 94.6 0.11 2.4E-06 58.2 8.5 62 857-921 115-180 (246)
488 cd02035 ArsA ArsA ATPase funct 94.5 0.11 2.4E-06 57.6 8.3 66 857-922 114-183 (217)
489 PF05729 NACHT: NACHT domain 94.5 0.057 1.2E-06 55.9 5.5 22 796-817 2-23 (166)
490 PRK14493 putative bifunctional 94.5 0.11 2.4E-06 59.9 8.3 22 795-816 2-23 (274)
491 cd03116 MobB Molybdenum is an 94.5 0.067 1.5E-06 56.8 6.0 23 795-817 2-24 (159)
492 cd01393 recA_like RecA is a b 94.4 0.16 3.5E-06 56.2 9.2 100 792-893 17-125 (226)
493 cd03692 mtIF2_IVc mtIF2_IVc: t 94.4 0.24 5.3E-06 46.9 9.0 77 1019-1108 3-82 (84)
494 PRK12337 2-phosphoglycerate ki 94.4 0.2 4.2E-06 61.5 10.4 25 793-817 254-278 (475)
495 cd03221 ABCF_EF-3 ABCF_EF-3 E 94.3 0.071 1.5E-06 55.4 5.8 25 794-818 26-50 (144)
496 cd01124 KaiC KaiC is a circadi 94.3 0.13 2.8E-06 55.0 7.9 24 796-819 1-24 (187)
497 PRK13185 chlL protochlorophyll 94.3 0.17 3.8E-06 57.7 9.4 64 856-920 117-185 (270)
498 TIGR03877 thermo_KaiC_1 KaiC d 94.2 0.095 2.1E-06 59.0 7.0 29 792-820 19-47 (237)
499 PF13555 AAA_29: P-loop contai 94.1 0.047 1E-06 48.9 3.3 21 795-815 24-44 (62)
500 PF06564 YhjQ: YhjQ protein; 94.0 0.19 4.1E-06 56.9 8.7 119 795-920 2-174 (243)
No 1
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.1e-164 Score=1428.33 Aligned_cols=788 Identities=68% Similarity=0.987 Sum_probs=659.6
Q ss_pred CCCcchhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 000728 503 SKGPEKKMSKQVREMQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKEKEKLLKKKQEGKLLT 582 (1326)
Q Consensus 503 ~~~~~~~~~~~~~~~~e~~~~~~~~eE~~~r~EEE~~~~eeEe~~~~ee~er~~~e~~~~k~~~~k~k~~~~k~e~k~~~ 582 (1326)
.+...++..+.++.||+.++++++++|+++|++||+.|+++|+++++++++++++|.++++++++++++++.+++|++||
T Consensus 205 ~Kk~~kk~~Kgv~~~qe~La~~qe~eE~qkreeEE~~r~eeEEer~~ee~E~~~eEak~kkKekekek~er~KaeGklLT 284 (1064)
T KOG1144|consen 205 GKKAEKKKPKGVRAMQEALAKRQEEEERQKREEEERLRREEEEERRREEEEAQEEEAKEKKKEKEKEKKERKKAEGKLLT 284 (1064)
T ss_pred hcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccch
Confidence 34555666778999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHcC--CCCCCCCCcccccCCCccccccccccccCCCCCCccchhhhhhHHHHHhhhh-cccc
Q 000728 583 GKQKEEARRLEAMRNQFLAKG--IPLPTGDKEAASKRPKYQTKKKSAHHQANGAVPLKEDSIESKEKEQEKQETL-LEVD 659 (1326)
Q Consensus 583 ~k~~~~~~~~e~~~~~~~~~g--~~~~~~~~~~~~k~~~~~~Kkk~~~~k~~~~~~~~~~~~~~~~~~~e~~~~~-~~~~ 659 (1326)
.+|+++++++++++++|+++| +.++..+ +..+++|+|.+|+++..++.....+++.. ...++.+.. +.+.
T Consensus 285 akQK~~~a~aea~l~~ll~sg~~~~va~kd-g~~kKrpiY~nKKk~~rq~~~~~~s~~~~------~~~~~~e~~~~~~~ 357 (1064)
T KOG1144|consen 285 AKQKEEAALAEAFLKQLLASGGGLPVADKD-GDSKKRPIYANKKKKARQKGNDRTSVEKL------GEVEAKENHAGDVG 357 (1064)
T ss_pred HhhHHHHHHHHHHHHHHHhcCCCCCCCccc-CCcccCcccccccccccccccchhhhhhc------ccCchhhhccCCCC
Confidence 999999999999999999997 4444333 33678999999998755544332221110 000011100 0111
Q ss_pred cccchhhhccccccccCCccccCCCCcccccc---CCCCcchhhhhcCcccccccCCCCCCCcccCCCCCchhhhhhccc
Q 000728 660 VGETEKVEEGESLTVEEKPEIADAPKENEVEE---EDDDDDEEWDAKSWDDVNLNVKGAFDDEEADSEPEPLVKKEIKSA 736 (1326)
Q Consensus 660 ~~~~~~~~~~~~~~~~e~~~~~~~~~e~~~ee---eeedv~DdWea~s~dd~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 736 (1326)
+.+...++..+.+.. .+|+..++. +.-...++|++.. +.....+++|.++ +.+++...+.+..
T Consensus 358 ~~d~~~~~~~e~~~~--------~e~e~~~~dv~~e~g~~e~~~~~k~----~~~~~~d~dd~ee--~~~e~~~~e~~e~ 423 (1064)
T KOG1144|consen 358 SVDTEEVDLEEDSNT--------DEKEGTPEDVDQEEGEEEDDWDAKV----DLAIDGDDDDDEE--ELQEEVDKELKEA 423 (1064)
T ss_pred CCcchhhccccccCC--------cccccCCCChhhhhcccchhhhccc----cccccccccchhh--hhchhhhhccccc
Confidence 111111111111111 222221110 0011123466542 2333334433332 1222222222111
Q ss_pred CCCCCccCCCccccccccCCCCCCCchhhhhhccchhhhcCCCCcCCCCcccccCCCCCEEEEEeCCCCCHHHHHHHHHc
Q 000728 737 IPSPRDAAEKPAVAVKKAIPEQPLKSQDAVTRKKEPAAKSKEPEVDATPKQAEENLRSPICCIMGHVDTGKTKLLDCIRG 816 (1326)
Q Consensus 737 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~piV~IlGhvdaGKTTLLd~L~~ 816 (1326)
..+..........+..++ .+ +.++...+.+. .+...+.+..+...++.++|+||||||||||+|||.||++|++
T Consensus 424 ~~~~e~s~~~~~~a~~k~---~~-~~~d~~t~~~~--~~~~~~~~~~~~~~~~~~lRSPIcCilGHVDTGKTKlld~ir~ 497 (1064)
T KOG1144|consen 424 EEEEEDSEKPTEDAAVKA---IS-KVEDAATRTKR--AKIAKRATNESANESTENLRSPICCILGHVDTGKTKLLDKIRG 497 (1064)
T ss_pred ccchhhcccccccccccc---cc-ccchhhhhhhh--cchhccCchhhccccchhcCCceEEEeecccccchHHHHHhhc
Confidence 101111000000000000 00 11111111111 1223344455566788899999999999999999999999999
Q ss_pred CcccccccCceeeeeeeeEeccccchhhhhhhccccc--cCCCCEEEEeCCCCcchhhhhhhccCccceeEEeeccccCC
Q 000728 817 TNVQEGEAGGITQQIGATYFPAENIRERTRELKANAT--LKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGL 894 (1326)
Q Consensus 817 ~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~--~~~~~I~IIDTPGhe~F~~lr~rg~~~aDiaILVVDa~~Gv 894 (1326)
+||+.|++|||||+||++|||..+++.++..+..... ++.|+|++||||||++|+++|+||+++||++|||||+|||+
T Consensus 498 tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsFtnlRsrgsslC~~aIlvvdImhGl 577 (1064)
T KOG1144|consen 498 TNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESFTNLRSRGSSLCDLAILVVDIMHGL 577 (1064)
T ss_pred cccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhhhhhhhccccccceEEEEeehhccC
Confidence 9999999999999999999999999999988887654 88999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHhcCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccC
Q 000728 895 EPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKD 974 (1326)
Q Consensus 895 ~~QT~E~l~~l~~~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~e~~~~l~~I~~~L~e~Gl~~e~~~~~~d 974 (1326)
.|||+++|++|+.+++||||++|||||+|+|..+++++|..+|.+|..+++++|..|+..|+.+|+++|||..+||.|.+
T Consensus 578 epqtiESi~lLR~rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~ 657 (1064)
T KOG1144|consen 578 EPQTIESINLLRMRKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKE 657 (1064)
T ss_pred CcchhHHHHHHHhcCCCeEEeehhhhhhcccccCCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcccchhheeeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceeEEeCCCcCCCChhhHHHHHHHHHHHhHhhhhhcccccceeEEEEEEEeCceeEEEEEEEeeEecCCCEEEEccC
Q 000728 975 RGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGL 1054 (1326)
Q Consensus 975 ~g~~v~iVpvSA~tGeGI~eLl~~L~~~~q~~l~e~l~~~~~~~~~VlEvk~~~G~Gtvi~giV~~G~Lr~GD~IVl~g~ 1054 (1326)
++.+|++||+||.+|+||++|+.+|++|+|.+|..+|.|.+.++|+||+|+.++|+|+||+++|+||+||.||.|||||+
T Consensus 658 ~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m~~kl~y~~ev~cTVlEVKvieG~GtTIDViLvNG~L~eGD~IvvcG~ 737 (1064)
T KOG1144|consen 658 MGETVSIVPTSAISGEGIPDLLLLLVQLTQKTMVEKLAYVDEVQCTVLEVKVIEGHGTTIDVILVNGELHEGDQIVVCGL 737 (1064)
T ss_pred ccceEEeeecccccCCCcHHHHHHHHHHHHHHHHHHHhhhhheeeEEEEEEeecCCCceEEEEEEcceeccCCEEEEcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeeeeeeccCCCCCceeeecceeecccccccccceeeeccccccccCCCceEEcCCcchHHHHHHHHHHHHHHHHhh
Q 000728 1055 QGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAAQGIKITAQGLEHAIAGTGLYVVGPDDDLEDVKEEAMEDMKSVMSR 1134 (1326)
Q Consensus 1055 ~g~~~~~IR~Ll~p~p~~e~rVk~~~~~~k~v~aa~gv~i~~~gl~~~~aG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 1134 (1326)
+|||+|+||+||+|+||+++||++.|+||++|++|+||+|++.||++++||++++|++++++++.+++.+|.+|.++|++
T Consensus 738 ~GpIvTtIRaLLtP~PlkElRVk~~Y~hhkEvkaA~GiKI~A~~LEkaiaG~~l~VvgpeDd~e~lk~~~m~dl~~~l~~ 817 (1064)
T KOG1144|consen 738 QGPIVTTIRALLTPQPLKELRVKGTYVHHKEVKAAQGIKIAAKDLEKAIAGTRLLVVGPEDDIEELKEEAMEDLESVLSR 817 (1064)
T ss_pred CCchhHHHHHhcCCcchHhhccccceeehhHhhhhccchhhhcchHHHhcCCeeEEeCCcccHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCceEEEcCCcccHHHHHHHhccCCceeeEEEeecCccccchHHHHhhhccccCcccEEEEeCCCCCHHHHHHHHH
Q 000728 1135 IDKSGEGVCVQASTLGSLEALLEFLKSDAVKIPVSGISIGPVHKKDVMRASVMLEKKKEYATILAFDVKVTPEARELAEE 1214 (1326)
Q Consensus 1135 ~~~~~~gvivkadt~GSlEAl~~~L~~~~v~i~v~~~~vG~V~~~DV~~A~~~~~~~~~~a~IlaFnvkv~~~a~~~A~~ 1214 (1326)
|++++.||||||+|||||||||+||++ ++|||.++||||||++|||.|++|+++.+.||+||||+|+|..+|+.+|.+
T Consensus 818 Id~sgeGv~vqastlgslealleflk~--~kIPv~gi~IGPVhKKDvmka~~MlEk~kEyA~iLaFDVkv~~eA~e~Ad~ 895 (1064)
T KOG1144|consen 818 IDKSGEGVYVQASTLGSLEALLEFLKT--VKIPVSGIGIGPVHKKDVMKASVMLEKKKEYATILAFDVKVEREARELADE 895 (1064)
T ss_pred hhccCCceEEEecccchHHHHHHHHhh--cCcccccccccccchHHHHHHHHHHhhccceeEEEEEeeEeeHHHHHHHHh
Confidence 999999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred cCCeEEEcchHhHHHHHHHHHHhhhhhHHHHhhhcceeccceeeeecccccCCCCCeEEEEEEeeeEEeeCCeeEEEEec
Q 000728 1215 LGVKIFIADIIYHLFDQFTAYINNLKEEKKREAADEAVFPCVLKILPNCVFNKKDPIVLGVDVVEGIAKVRMLELQFVFP 1294 (1326)
Q Consensus 1215 ~gV~I~~~~IIY~L~d~~~~~~~~l~~~~~~e~~~~av~p~~l~i~~~~vf~~k~~~IaG~~V~~G~lk~gt~i~~~v~r 1294 (1326)
+||+||+++|||||||.|+.|++.+++.++++..+.|||||+|+|||+||||+++|+|+||.|..|+|++||||| ++
T Consensus 896 ~gVkIF~adiIYhLfD~f~~y~e~~ke~kkke~~~~AvFPc~L~ilpn~ifN~RdPiv~GV~V~~GilkiGTPiC---v~ 972 (1064)
T KOG1144|consen 896 MGVKIFCADIIYHLFDAFTKYIEEIKEEKKKESADEAVFPCVLQILPNCIFNKRDPIVLGVDVEEGILKIGTPIC---VP 972 (1064)
T ss_pred hCceeeehhHHHHHHHHHHHHHHHHHHHHHhhccCceeeeeehhhhhHhhccCCCCeEEEEEeecCeeecCCceE---Ee
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998 33
Q ss_pred CCeEEEEEeeeeeeeeecccccCccccCCC
Q 000728 1295 KGILLILAELRLLKITINPLILPRKARKQP 1324 (1326)
Q Consensus 1295 ~g~~i~~g~i~slk~~k~~~~~~~~~~~~~ 1324 (1326)
.-+.++.|+|.||.+ ||.+++.+++||.
T Consensus 973 ~r~~~~lG~v~Sie~--Nh~~vd~akkGqe 1000 (1064)
T KOG1144|consen 973 KREFIDLGRVASIEN--NHKPVDYAKKGQE 1000 (1064)
T ss_pred ccceeeeeeeeeecc--cCcccchhhcCCe
Confidence 366789999888765 5889999999984
No 2
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=100.00 E-value=5.6e-90 Score=844.42 Aligned_cols=521 Identities=41% Similarity=0.704 Sum_probs=465.9
Q ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhh--ccccccCCCCEEEEeCCCCc
Q 000728 791 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTREL--KANATLKVPGLLVIDTPGHE 868 (1326)
Q Consensus 791 ~~R~piV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v--~~~~~~~~~~I~IIDTPGhe 868 (1326)
.+|+|+|+||||+||||||||++|+++++..++.+|+|+++|++++++.......... .....++.++|+|||||||+
T Consensus 1 ~~r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e 80 (590)
T TIGR00491 1 KLRSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHE 80 (590)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcH
Confidence 4799999999999999999999999999998999999999999999876433211110 01112334579999999999
Q ss_pred chhhhhhhccCccceeEEeeccccCCchhHHHHHHHHHhcCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHHHH
Q 000728 869 SFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEF 948 (1326)
Q Consensus 869 ~F~~lr~rg~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~e~ 948 (1326)
.|..++.++++.+|++|||||+++|+++||.+++.+++..++|+|||+||+|+..+|....+..|..++..+...+...|
T Consensus 81 ~f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v~~~~ 160 (590)
T TIGR00491 81 AFTNLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQVQQNL 160 (590)
T ss_pred hHHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHHcCCCEEEEEECCCccchhhhccCchHHHHHHhhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999989988888999999998888888899
Q ss_pred HHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHHHHHhHhhhhh--cccccceeEEEEEE
Q 000728 949 NMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLT--FRNELQCTVLEVKV 1026 (1326)
Q Consensus 949 ~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~q~~l~e~l~--~~~~~~~~VlEvk~ 1026 (1326)
...+..+..+|.++|+..+.||...+|++.+++|||||+||+||++|+.+|..+.+..|...|. +..+++|+|++++.
T Consensus 161 ~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~~~~l~~~l~~~~~~~~~~~V~e~~~ 240 (590)
T TIGR00491 161 DTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLAQQYLEEQLKLEEEGPARGTILEVKE 240 (590)
T ss_pred HHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHHHHHhhhhhccCCCCCeEEEEEEEEE
Confidence 8889999999999999999999888899999999999999999999999999888877765553 46789999999999
Q ss_pred EeCceeEEEEEEEeeEecCCCEEEEccCCCceeeeeeeccCCCCCceeeecc-eeecccccccccceeeeccccccccCC
Q 000728 1027 IEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKG-TYLHHKQIKAAQGIKITAQGLEHAIAG 1105 (1326)
Q Consensus 1027 ~~G~Gtvi~giV~~G~Lr~GD~IVl~g~~g~~~~~IR~Ll~p~p~~e~rVk~-~~~~~k~v~aa~gv~i~~~gl~~~~aG 1105 (1326)
+.|+|++++++|.+|+|++||.|++++++||++++||+||+|.|++++|+.+ .|.++.++.+++|++|.+.||+.+.+|
T Consensus 241 ~~G~G~v~t~~v~~G~l~~GD~iv~~~~~~~i~~kVr~l~~~~~l~e~r~~~~~~~~~~~~~~~~~~~v~~~~l~~~~aG 320 (590)
T TIGR00491 241 ETGLGMTIDAVIYDGILRKGDTIAMAGSDDVIVTRVRALLKPRPLEEMRESRKKFQKVDEVVAAAGVKIAAPGLDDVMAG 320 (590)
T ss_pred cCCCceEEEEEEEcCEEeCCCEEEEccCCCcccEEEEEecCCCccccccccccccCCcceecCCCceeEEecCCCCCCCC
Confidence 9999999999999999999999999999999999999999999999999875 477889999999999999999999999
Q ss_pred CceEEcCCcchHHHHHHHHHHHHHHHHhhhhccCCceEEEcCCcccHHHHHHHhccCCceeeEEEeecCccccchHHHHh
Q 000728 1106 TGLYVVGPDDDLEDVKEEAMEDMKSVMSRIDKSGEGVCVQASTLGSLEALLEFLKSDAVKIPVSGISIGPVHKKDVMRAS 1185 (1326)
Q Consensus 1106 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gvivkadt~GSlEAl~~~L~~~~v~i~v~~~~vG~V~~~DV~~A~ 1185 (1326)
+.|++++ ++++..+++.++.++..+ .+.....||||||||+||||||+.+|.. ..|||++++||+||++||++|+
T Consensus 321 ~~~~~~~-~e~~~~~~~~~~~~~~~~--~~~~~~~~vivkad~~Gs~EAl~~~l~~--~~i~i~~~~vG~it~~Dv~~A~ 395 (590)
T TIGR00491 321 SPIRVVT-DEEIEKVKEEILKEVEEI--KIDTDEEGVVVKADTLGSLEALVNELRD--MGVPIKKADIGDVSKRDVVEAG 395 (590)
T ss_pred CEEEEcC-cHHHHHHHHHHHHHhhhc--ccccccccEEEEecCcchHHHHHHHHHh--CCCcEEEecCCCCcHhHHHHHh
Confidence 9998774 445666666666555433 3456678999999999999999999987 5699999999999999999999
Q ss_pred hhccccCcccEEEEeCCCCCHHHHHHHHHcCCeEEEcchHhHHHHHHHHHHhhhhhHHHHhhhcceeccceeeeeccccc
Q 000728 1186 VMLEKKKEYATILAFDVKVTPEARELAEELGVKIFIADIIYHLFDQFTAYINNLKEEKKREAADEAVFPCVLKILPNCVF 1265 (1326)
Q Consensus 1186 ~~~~~~~~~a~IlaFnvkv~~~a~~~A~~~gV~I~~~~IIY~L~d~~~~~~~~l~~~~~~e~~~~av~p~~l~i~~~~vf 1265 (1326)
+|.++++.||+||||||+++++|+.+|+++||+||+|+|||||||+|++||.+++++.+.+.....+|||.++|+|++||
T Consensus 396 ~~~~~~~~~a~Il~Fnv~~~~~a~~~A~~~~v~i~~~~iIY~l~d~~~~~~~~~~~~~~~~~~~~~~~~a~v~il~~~vf 475 (590)
T TIGR00491 396 IAKQEDRVYGAIIAFNVKVLPGAEQELKKYDIKLFSDNIIYRLMEEFEEWIEGIEEEKKRKWMEAIIKPAKIRLIPKLVF 475 (590)
T ss_pred hcccCCCCceEEEEecCCCCHHHHHHHHHcCCEEEEeCcHHHHHHHHHHHHHhhhcchhhhhcceeEEEEEEEEeeheee
Confidence 99998999999999999999999999999999999999999999999999999999988777788899999999999999
Q ss_pred CCCCCeEEEEEEeeeEEeeCCeeEEEEecCCeEEEEEeeeeeeeeecccccCccccCC
Q 000728 1266 NKKDPIVLGVDVVEGIAKVRMLELQFVFPKGILLILAELRLLKITINPLILPRKARKQ 1323 (1326)
Q Consensus 1266 ~~k~~~IaG~~V~~G~lk~gt~i~~~v~r~g~~i~~g~i~slk~~k~~~~~~~~~~~~ 1323 (1326)
+.++|+||||+|++|+|++|++|| .++|.++ |+|.||+|.++ .+..+++|+
T Consensus 476 ~~~~~~i~G~~V~~G~i~~~~~v~---r~~~~~i--G~i~slk~~k~--~V~ev~~G~ 526 (590)
T TIGR00491 476 RQSKPAIVGVEVLTGVIRQGYPLM---KDDGETV--GTVRSMQDKGE--NVKSASAGQ 526 (590)
T ss_pred eCCCCeEEEEEEecCEEecCCeEE---ecCCEEE--EEEchhcccCc--cccEECCCC
Confidence 998899999999999999999873 3467655 99999999998 556677775
No 3
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.2e-90 Score=806.86 Aligned_cols=470 Identities=37% Similarity=0.476 Sum_probs=404.1
Q ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcch
Q 000728 791 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF 870 (1326)
Q Consensus 791 ~~R~piV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F 870 (1326)
.+|+|+||||||+||||||||++||.+++..+++||||||||+|++++... ..+.|+|||||||+.|
T Consensus 2 ~~R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~-------------~~~~itFiDTPGHeAF 68 (509)
T COG0532 2 ELRPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVI-------------KIPGITFIDTPGHEAF 68 (509)
T ss_pred CCCCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccC-------------CCceEEEEcCCcHHHH
Confidence 479999999999999999999999999999999999999999999997632 2367999999999999
Q ss_pred hhhhhhccCccceeEEeeccccCCchhHHHHHHHHHhcCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHHHHHH
Q 000728 871 TNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 950 (1326)
Q Consensus 871 ~~lr~rg~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~e~~~ 950 (1326)
++||.||+..||++|||||+++|++|||++.|+|++.+++||||++||||++..
T Consensus 69 t~mRaRGa~vtDIaILVVa~dDGv~pQTiEAI~hak~a~vP~iVAiNKiDk~~~-------------------------- 122 (509)
T COG0532 69 TAMRARGASVTDIAILVVAADDGVMPQTIEAINHAKAAGVPIVVAINKIDKPEA-------------------------- 122 (509)
T ss_pred HHHHhcCCccccEEEEEEEccCCcchhHHHHHHHHHHCCCCEEEEEecccCCCC--------------------------
Confidence 999999999999999999999999999999999999999999999999999731
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHHHHHhHhhhhhcccccceeEEEEEEEeCc
Q 000728 951 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQCTVLEVKVIEGH 1030 (1326)
Q Consensus 951 ~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~q~~l~e~l~~~~~~~~~VlEvk~~~G~ 1030 (1326)
....+..+|.++||+++. ||+.+.|||+||+||+||++||..|+.+.+. +..+..+..+..|+|+|++..+|+
T Consensus 123 np~~v~~el~~~gl~~E~------~gg~v~~VpvSA~tg~Gi~eLL~~ill~aev-~elka~~~~~a~gtviE~~~dkG~ 195 (509)
T COG0532 123 NPDKVKQELQEYGLVPEE------WGGDVIFVPVSAKTGEGIDELLELILLLAEV-LELKANPEGPARGTVIEVKLDKGL 195 (509)
T ss_pred CHHHHHHHHHHcCCCHhh------cCCceEEEEeeccCCCCHHHHHHHHHHHHHH-HhhhcCCCCcceEEEEEEEeccCC
Confidence 134567788899999875 4678999999999999999999999876654 344556678899999999999999
Q ss_pred eeEEEEEEEeeEecCCCEEEEccCCCceeeeeeeccCCCCCceeeecceeecccccccccceeeeccccccccCCCceEE
Q 000728 1031 GTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAAQGIKITAQGLEHAIAGTGLYV 1110 (1326)
Q Consensus 1031 Gtvi~giV~~G~Lr~GD~IVl~g~~g~~~~~IR~Ll~p~p~~e~rVk~~~~~~k~v~aa~gv~i~~~gl~~~~aG~~~~v 1110 (1326)
|++++++|++|+|+.||.|++|+.+|++.+.++.++.|.+....+....++...++++|.+..+++.++..+.++..+++
T Consensus 196 G~vatviv~~GtL~~GD~iv~g~~~g~I~t~v~~~~~~i~~a~ps~~v~i~g~~evp~Ag~~~~v~~~e~~A~~~~~~r~ 275 (509)
T COG0532 196 GPVATVIVQDGTLKKGDIIVAGGEYGRVRTMVDDLGKPIKEAGPSKPVEILGLSEVPAAGDVFIVVKDEKKARAIAELRV 275 (509)
T ss_pred CceEEEEEecCeEecCCEEEEccCCCceEEeehhcCCCccccCCCCCeEEeccccccccCceEEecCChHHHhhhhhHhh
Confidence 99999999999999999999999999999999999988877777766666777788888888888888888888887776
Q ss_pred cC--CcchHHHHHHHHHHHHHHHHhhhhccCCceEEEcCCcccHHHHHHHhc---cCCceeeEEEeecCccccchHHHHh
Q 000728 1111 VG--PDDDLEDVKEEAMEDMKSVMSRIDKSGEGVCVQASTLGSLEALLEFLK---SDAVKIPVSGISIGPVHKKDVMRAS 1185 (1326)
Q Consensus 1111 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~gvivkadt~GSlEAl~~~L~---~~~v~i~v~~~~vG~V~~~DV~~A~ 1185 (1326)
.. ...........++..+..+..+.+....||||||||+||||||..+|. .++|+++|++++||+||++||++|+
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~viiKaDt~GSlEAL~~~L~~~~~~~v~~~i~~~~VG~ite~DV~lA~ 355 (509)
T COG0532 276 VLLREAELASKKKGELEELIAEIKIRGELKELNVILKADTQGSLEALKGSLKKLGVDEVKVRIIHAGVGGITESDVMLAA 355 (509)
T ss_pred hhhhhhhhhhHHHHHHHHHHHhhhccCCcceecEEEEEcccchHHHHHHHHHhcCCCceEEEEEEeecCCCChhhHHHHH
Confidence 64 222222333333333333332334456899999999999999998874 5788999999999999999999999
Q ss_pred hhccccCcccEEEEeCCCCCHHHHHHHHHcCCeEEEcchHhHHHHHHHHHHhhhhhHHHHhhh-cceeccceeeeecccc
Q 000728 1186 VMLEKKKEYATILAFDVKVTPEARELAEELGVKIFIADIIYHLFDQFTAYINNLKEEKKREAA-DEAVFPCVLKILPNCV 1264 (1326)
Q Consensus 1186 ~~~~~~~~~a~IlaFnvkv~~~a~~~A~~~gV~I~~~~IIY~L~d~~~~~~~~l~~~~~~e~~-~~av~p~~l~i~~~~v 1264 (1326)
++ +|+||||||++++.|+++|+..||+||+|+|||||||+|+.||.++|++..++.. +.+ +|+.+.++
T Consensus 356 as------~avIigFnV~~~~~a~~~ae~~~V~I~~~~iIY~lied~~~~~~g~l~p~~~e~~~g~~-~~r~v~~~---- 424 (509)
T COG0532 356 AS------DAVIIGFNVRVDPEARRLAESEGVKIRYYDVIYKLIEDVEAAMKGMLEPEKKERVIGLA-EVRAVFKL---- 424 (509)
T ss_pred hc------CCEEEEEecCCCHHHHHHHHhcCCcEEEcchHHHHHHHHHHHHHhccchhhhhhcccce-EEEEEEEc----
Confidence 84 7999999999999999999999999999999999999999999999999887765 554 44433222
Q ss_pred cCCCCCeEEEEEEeeeEEeeCCeeEEEEecCCeEEEEEeeeeeeeeecccccCccccCC
Q 000728 1265 FNKKDPIVLGVDVVEGIAKVRMLELQFVFPKGILLILAELRLLKITINPLILPRKARKQ 1323 (1326)
Q Consensus 1265 f~~k~~~IaG~~V~~G~lk~gt~i~~~v~r~g~~i~~g~i~slk~~k~~~~~~~~~~~~ 1323 (1326)
++.|.|+||+|++|+|++|+++ +++|+|.+||.|+|.||++++++| ..+++||
T Consensus 425 --~k~g~IaG~~V~~G~ikr~~~v--~~~rd~~vi~~G~i~sLk~~kddv--~ev~~G~ 477 (509)
T COG0532 425 --PKVGAIAGCMVTEGVIKRGAPV--RVVRDGVVIYEGEVESLKRFKDDV--KEVRKGQ 477 (509)
T ss_pred --CCCCeEEEEEEecCEEecCCcE--EEEeCCeEEEeeEEEeeeccCccH--hHhccCc
Confidence 3589999999999999999999 699999999999999999999954 5566665
No 4
>PRK04004 translation initiation factor IF-2; Validated
Probab=100.00 E-value=1.5e-88 Score=835.32 Aligned_cols=521 Identities=45% Similarity=0.722 Sum_probs=467.8
Q ss_pred cCCCCCEEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhh-hc-cccccCCCCEEEEeCCCC
Q 000728 790 ENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRE-LK-ANATLKVPGLLVIDTPGH 867 (1326)
Q Consensus 790 ~~~R~piV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~-v~-~~~~~~~~~I~IIDTPGh 867 (1326)
..+|+|+|+||||+||||||||++|+++++..++.+++|+++|++++++......... +. ....+..++|+|||||||
T Consensus 2 ~~~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~ 81 (586)
T PRK04004 2 KKLRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGH 81 (586)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCCh
Confidence 3689999999999999999999999999999999999999999999886543211000 00 012233456999999999
Q ss_pred cchhhhhhhccCccceeEEeeccccCCchhHHHHHHHHHhcCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHHH
Q 000728 868 ESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNE 947 (1326)
Q Consensus 868 e~F~~lr~rg~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~e 947 (1326)
+.|..++.++++.||++|||||+++|+++||.+++.++...++|+|||+||||+.+.|....+..|..++..+...+...
T Consensus 82 e~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~~v~~~ 161 (586)
T PRK04004 82 EAFTNLRKRGGALADIAILVVDINEGFQPQTIEAINILKRRKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQRVQQE 161 (586)
T ss_pred HHHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCchhhhhhcCchHHHHHhhhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988898888889999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHHHHHhHhhhhh--cccccceeEEEEE
Q 000728 948 FNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLT--FRNELQCTVLEVK 1025 (1326)
Q Consensus 948 ~~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~q~~l~e~l~--~~~~~~~~VlEvk 1025 (1326)
|...+..+..+|..+||+.++||...+|++.+++||+||++|+||.+|+..|..+++..|...+. +..+++|+|++++
T Consensus 162 f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~~~~l~~~l~~~~~~~~~~~V~ev~ 241 (586)
T PRK04004 162 LEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLAQRYLEERLKIDVEGPGKGTVLEVK 241 (586)
T ss_pred HHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHHHHHHHHhhccCCCCCeEEEEEEEE
Confidence 99999999999999999999998888899999999999999999999999998877776665554 4567899999999
Q ss_pred EEeCceeEEEEEEEeeEecCCCEEEEccCCCceeeeeeeccCCCCCceee-ecceeecccccccccceeeeccccccccC
Q 000728 1026 VIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELR-VKGTYLHHKQIKAAQGIKITAQGLEHAIA 1104 (1326)
Q Consensus 1026 ~~~G~Gtvi~giV~~G~Lr~GD~IVl~g~~g~~~~~IR~Ll~p~p~~e~r-Vk~~~~~~k~v~aa~gv~i~~~gl~~~~a 1104 (1326)
.++|+|++++++|.+|+|++||.|++++.+|+++++||+|++|.|++++| +.+.|.+++++.++++++|.+.||+.+.+
T Consensus 242 ~~~g~G~v~~~~v~~GtL~~Gd~vv~~~~~~~i~~kVr~l~~~~~~~e~~~~~~~~~~~~~~~~~~~v~i~~~gl~~~~~ 321 (586)
T PRK04004 242 EERGLGTTIDVILYDGTLRKGDTIVVGGKDGPIVTKVRALLKPRPLDEMRDPEDKFKPVDEVVAAAGVKISAPDLEDALA 321 (586)
T ss_pred EeCCCceEEEEEEEcCEEECCCEEEECcCCCcceEEEEEEecCcchhhccccccccccccccCCCCceEEEeCCccccCC
Confidence 99999999999999999999999999999899999999999999999999 77788999999999999999999999999
Q ss_pred CCceEEcCCcchHHHHHHHHHHHHHHHHhhhhccCCceEEEcCCcccHHHHHHHhccCCceeeEEEeecCccccchHHHH
Q 000728 1105 GTGLYVVGPDDDLEDVKEEAMEDMKSVMSRIDKSGEGVCVQASTLGSLEALLEFLKSDAVKIPVSGISIGPVHKKDVMRA 1184 (1326)
Q Consensus 1105 G~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gvivkadt~GSlEAl~~~L~~~~v~i~v~~~~vG~V~~~DV~~A 1184 (1326)
|+.|+++.+ +++..+...++.++..+. +.....||||||||+||||||+++|.. .+|+|++++|||||++||++|
T Consensus 322 g~~~~v~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~vivkad~~Gs~EAi~~~l~~--~~i~i~~~~vG~it~~Dv~lA 396 (586)
T PRK04004 322 GSPLRVVRD-EDVEEVKEEVEEEIEEIR--IETDEEGVVVKADTLGSLEALVNELRE--EGIPIRKADVGDISKRDVIEA 396 (586)
T ss_pred CCeEEEeCc-HHHHHHHHHHHHHHHhcc--ccccccCEEEEeCCccHHHHHHHHHHh--CCCCEEEeccCCCCHHHHHHH
Confidence 999999987 556666666666655442 455678999999999999999999987 689999999999999999999
Q ss_pred hhhccccCcccEEEEeCCCCCHHHHHHHHHcCCeEEEcchHhHHHHHHHHHHhhhhhHHHHhhhcceeccceeeeecccc
Q 000728 1185 SVMLEKKKEYATILAFDVKVTPEARELAEELGVKIFIADIIYHLFDQFTAYINNLKEEKKREAADEAVFPCVLKILPNCV 1264 (1326)
Q Consensus 1185 ~~~~~~~~~~a~IlaFnvkv~~~a~~~A~~~gV~I~~~~IIY~L~d~~~~~~~~l~~~~~~e~~~~av~p~~l~i~~~~v 1264 (1326)
++|+++++.||+||||||+++++|+.+|+++||+|++|+|||||||+|++||.+++++...+....++|||.++|++.+|
T Consensus 397 ~~~~~~~~~~a~Il~FnV~~~~~a~~~A~~~~V~I~~~~iIY~lid~~~~~~~~~~~~~~~~~~~~~~g~a~v~il~~~v 476 (586)
T PRK04004 397 STVAEKDPLYGVILAFNVKVLPDAEEEAEKSDVKIFTGDVIYQLIEDYEKWVKEQKEAEKEKILEKIVRPAKIRILPGYV 476 (586)
T ss_pred HhhhccCCCceEEEEecCCCCHHHHHHHHHcCCeEEEeChHHHHHHHHHHHHHhhhcchhhhhhheeeceEEEEEcccee
Confidence 99999999999999999999999999999999999999999999999999999999998887778889999999999999
Q ss_pred cCCCCCeEEEEEEeeeEEeeCCeeEEEEec-CCeEEEEEeeeeeeeeecccccCccccCC
Q 000728 1265 FNKKDPIVLGVDVVEGIAKVRMLELQFVFP-KGILLILAELRLLKITINPLILPRKARKQ 1323 (1326)
Q Consensus 1265 f~~k~~~IaG~~V~~G~lk~gt~i~~~v~r-~g~~i~~g~i~slk~~k~~~~~~~~~~~~ 1323 (1326)
|+.++|+||||+|++|+|++|+|| +| +|.+ .|+|.||+|.++ .+..+++|+
T Consensus 477 f~~~~~~IaGc~V~~G~i~~~~~v----~r~~g~~--iG~i~Slk~~k~--~V~ev~~G~ 528 (586)
T PRK04004 477 FRQSDPAIVGVEVLGGTIKPGVPL----IKEDGKR--VGTIKQIQDQGE--NVKEAKAGM 528 (586)
T ss_pred EecCCCeEEEEEEEeCEEecCCEE----EEECCEE--EEEEehhhccCC--cccEeCCCC
Confidence 998889999999999999999986 45 8854 599999999999 556677775
No 5
>PRK14845 translation initiation factor IF-2; Provisional
Probab=100.00 E-value=5.9e-89 Score=866.09 Aligned_cols=515 Identities=40% Similarity=0.670 Sum_probs=471.2
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhc--cccccCCCCEEEEeCCCCcchh
Q 000728 794 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELK--ANATLKVPGLLVIDTPGHESFT 871 (1326)
Q Consensus 794 ~piV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~--~~~~~~~~~I~IIDTPGhe~F~ 871 (1326)
-+..||++| |||||++||+++++.+++||||||||++++++..+...+..+. ....++.|+|+|||||||+.|.
T Consensus 465 ~~~~~~~~~----KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~ 540 (1049)
T PRK14845 465 FIANGILVH----NTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFT 540 (1049)
T ss_pred ceeeeeecc----cccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHH
Confidence 344678887 9999999999999999999999999999999886554443321 1234567899999999999999
Q ss_pred hhhhhccCccceeEEeeccccCCchhHHHHHHHHHhcCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000728 872 NLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1326)
Q Consensus 872 ~lr~rg~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~e~~~~ 951 (1326)
.++.++++.||++|||||+++|+++||.+++.++...++|+|||+||+|+.++|..+++.+|...+..|...+..++..+
T Consensus 541 ~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~~lk~~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~ 620 (1049)
T PRK14845 541 SLRKRGGSLADLAVLVVDINEGFKPQTIEAINILRQYKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIK 620 (1049)
T ss_pred HHHHhhcccCCEEEEEEECcccCCHhHHHHHHHHHHcCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHHHHHhHhhhhh--cccccceeEEEEEEEeC
Q 000728 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLT--FRNELQCTVLEVKVIEG 1029 (1326)
Q Consensus 952 l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~q~~l~e~l~--~~~~~~~~VlEvk~~~G 1029 (1326)
+..+..+|.++|++.+.||.+.+|++.+++|||||+||+||++|+.+|..+.+..|...+. ...+++|+|++++.++|
T Consensus 621 l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~~~~l~~~L~~~~~~~~~g~VlEv~~~kG 700 (1049)
T PRK14845 621 LYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLAQKYLEERLKLNVEGYAKGTILEVKEEKG 700 (1049)
T ss_pred HHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhhHHhhhhhhccCCCCceEEEEEEEEEecC
Confidence 9999999999999999999999999999999999999999999999998887766654444 45678999999999999
Q ss_pred ceeEEEEEEEeeEecCCCEEEEccCCCceeeeeeeccCCCCCceeeecc-eeecccccccccceeeeccccccccCCCce
Q 000728 1030 HGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKG-TYLHHKQIKAAQGIKITAQGLEHAIAGTGL 1108 (1326)
Q Consensus 1030 ~Gtvi~giV~~G~Lr~GD~IVl~g~~g~~~~~IR~Ll~p~p~~e~rVk~-~~~~~k~v~aa~gv~i~~~gl~~~~aG~~~ 1108 (1326)
+|+|++++|.+|+|++||+|++|++++|++++||+||+|.||+++|+.+ .|.+++++.+++||+|+++||+.++||+.|
T Consensus 701 ~G~vvt~iv~~G~Lk~GD~iv~g~~~~~i~~kVRaLl~p~pl~e~r~~~~~~~~~~~~~~a~~vki~a~gl~~~~aG~~~ 780 (1049)
T PRK14845 701 LGTTIDAIIYDGTLRRGDTIVVGGPDDVIVTKVRALLKPKPLDEIRDPRDKFDPVDEVTAAAGVKIAAPGLEEVLAGSPI 780 (1049)
T ss_pred ceeEEEEEEEcCEEecCCEEEEccCCCcceEEEEEecCcccccccccccccccccccccCCCceEEecCCccccCCCCeE
Confidence 9999999999999999999999999999999999999999999999765 788999999999999999999999999999
Q ss_pred EEcCCcchHHHHHHHHHHHHHHHHhhhhccCCceEEEcCCcccHHHHHHHhccCCceeeEEEeecCccccchHHHHhhhc
Q 000728 1109 YVVGPDDDLEDVKEEAMEDMKSVMSRIDKSGEGVCVQASTLGSLEALLEFLKSDAVKIPVSGISIGPVHKKDVMRASVML 1188 (1326)
Q Consensus 1109 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gvivkadt~GSlEAl~~~L~~~~v~i~v~~~~vG~V~~~DV~~A~~~~ 1188 (1326)
+++.++++++.+++.++.++.++ .+.....||||||||+||||||+.+|.. ..|||++++|||||++||++|++|+
T Consensus 781 ~v~~~e~~~~~~~~~~~~~~~~~--~~~~~~~~vivKaDt~GSlEAl~~~L~~--~~i~i~~~~vG~it~~DV~~A~~~~ 856 (1049)
T PRK14845 781 RIVPTKEKIEKAKEEVMKEVEEA--KIETDKEGILIKADTLGSLEALANELRK--AGIPIKKAEVGDITKKDVIEALSYK 856 (1049)
T ss_pred EEeCCHHHHHHHHHHHHHHHhhh--ccCcceeeEEEEecccchHHHHHHHHHh--CCCCEEEeeCCCCCHHHHHHHHhhh
Confidence 99999999998888888777655 2456778999999999999999999987 5799999999999999999999999
Q ss_pred cccCcccEEEEeCCCCCHHHHHHHHHcCCeEEEcchHhHHHHHHHHHHhhhhhHHHHhhhcceeccceeeeecccccCCC
Q 000728 1189 EKKKEYATILAFDVKVTPEARELAEELGVKIFIADIIYHLFDQFTAYINNLKEEKKREAADEAVFPCVLKILPNCVFNKK 1268 (1326)
Q Consensus 1189 ~~~~~~a~IlaFnvkv~~~a~~~A~~~gV~I~~~~IIY~L~d~~~~~~~~l~~~~~~e~~~~av~p~~l~i~~~~vf~~k 1268 (1326)
+++++||+||||||+++++|+.+|+++||+||+|+|||||||+|++||.+++++.+.+....++|||+++|+|.+||+.+
T Consensus 857 ~~~~~~a~Il~FnV~v~~~a~~~A~~~~V~I~~~~IIY~Lid~~~~~~~~~~~~~~~~~~~~~~~p~~v~ilp~~vF~~~ 936 (1049)
T PRK14845 857 QENPLYGVILGFNVKVLPEAQEEAEKYGVKIFVDNIIYKLVEDYTEWVKEEEEKKKRELFEKLIKPGIIRLLPDCIFRRS 936 (1049)
T ss_pred ccCCCCcEEEEecCCCCHHHHHHHHHcCCeEEEeChHHHHHHHHHHHHHhhhchhhhhhhhcccCceEEEeccceEEeCC
Confidence 99999999999999999999999999999999999999999999999999999998888888999999999999999999
Q ss_pred CCeEEEEEEeeeEEeeCCeeEEEEecCCeEEEEEeeeeeeeeecccccCccccCC
Q 000728 1269 DPIVLGVDVVEGIAKVRMLELQFVFPKGILLILAELRLLKITINPLILPRKARKQ 1323 (1326)
Q Consensus 1269 ~~~IaG~~V~~G~lk~gt~i~~~v~r~g~~i~~g~i~slk~~k~~~~~~~~~~~~ 1323 (1326)
+|+||||+|++|+|++|+||| .++|.++ |+|.||+|.++ .+..+++|+
T Consensus 937 ~~~IaG~~V~~G~i~~~~~l~---r~~~~~i--G~i~Slk~~k~--~V~ev~~G~ 984 (1049)
T PRK14845 937 NPAIVGVEVLEGTLRVGVTLI---KEDGMKV--GTVRSIKDRGE--NVKEAKAGK 984 (1049)
T ss_pred CCeEEEEEEeeCEEecCcEEE---ecCCEEE--EEEchHhccCc--cccEeCCCC
Confidence 999999999999999999874 3467554 99999999998 566778876
No 6
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.5e-81 Score=718.15 Aligned_cols=454 Identities=30% Similarity=0.461 Sum_probs=382.9
Q ss_pred cccCCCCCEEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCC
Q 000728 788 AEENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH 867 (1326)
Q Consensus 788 ~~~~~R~piV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGh 867 (1326)
.-...|+|+|+|||||||||||||++||.+.+..+++||||||||+|.++... +..|+|+|||||
T Consensus 147 ~~l~~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~---------------G~~iTFLDTPGH 211 (683)
T KOG1145|consen 147 KLLEPRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPS---------------GKSITFLDTPGH 211 (683)
T ss_pred hhcCCCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCC---------------CCEEEEecCCcH
Confidence 33456999999999999999999999999999999999999999999987653 235999999999
Q ss_pred cchhhhhhhccCccceeEEeeccccCCchhHHHHHHHHHhcCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHHH
Q 000728 868 ESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNE 947 (1326)
Q Consensus 868 e~F~~lr~rg~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~e 947 (1326)
..|..||.||+..+|++||||.+++|++|||.+.|.|++..++|+||+|||||++ +++
T Consensus 212 aAF~aMRaRGA~vtDIvVLVVAadDGVmpQT~EaIkhAk~A~VpiVvAinKiDkp-------~a~--------------- 269 (683)
T KOG1145|consen 212 AAFSAMRARGANVTDIVVLVVAADDGVMPQTLEAIKHAKSANVPIVVAINKIDKP-------GAN--------------- 269 (683)
T ss_pred HHHHHHHhccCccccEEEEEEEccCCccHhHHHHHHHHHhcCCCEEEEEeccCCC-------CCC---------------
Confidence 9999999999999999999999999999999999999999999999999999986 333
Q ss_pred HHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHHHHHhHhhhhhcccccceeEEEEEEE
Q 000728 948 FNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQCTVLEVKVI 1027 (1326)
Q Consensus 948 ~~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~q~~l~e~l~~~~~~~~~VlEvk~~ 1027 (1326)
+..++.+|..+|+..+ +||+++++||+||++|.||+.|.+.|+.+ ...|..+..++.+++++|+|+...
T Consensus 270 ----pekv~~eL~~~gi~~E------~~GGdVQvipiSAl~g~nl~~L~eaill~-Ae~mdLkA~p~g~~eg~VIES~vd 338 (683)
T KOG1145|consen 270 ----PEKVKRELLSQGIVVE------DLGGDVQVIPISALTGENLDLLEEAILLL-AEVMDLKADPKGPAEGWVIESSVD 338 (683)
T ss_pred ----HHHHHHHHHHcCccHH------HcCCceeEEEeecccCCChHHHHHHHHHH-HHHhhcccCCCCCceEEEEEeeec
Confidence 3567788999998765 67999999999999999999999888754 356777888999999999999999
Q ss_pred eCceeEEEEEEEeeEecCCCEEEEccCCCceeeeeeeccCCCCCceeeecceeeccccccc-ccceeeecccccc-ccCC
Q 000728 1028 EGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKA-AQGIKITAQGLEH-AIAG 1105 (1326)
Q Consensus 1028 ~G~Gtvi~giV~~G~Lr~GD~IVl~g~~g~~~~~IR~Ll~p~p~~e~rVk~~~~~~k~v~a-a~gv~i~~~gl~~-~~aG 1105 (1326)
+|+|.+.+++|.+|||+.|+.+ +||. .+++||+|++... +.|.. .++..+.+.||.. |++|
T Consensus 339 kg~G~~aT~iVkrGTLkKG~vl-V~G~---~w~KVr~l~D~nG-------------k~i~~A~Ps~pv~V~GwkdlP~aG 401 (683)
T KOG1145|consen 339 KGRGPVATVIVKRGTLKKGSVL-VAGK---SWCKVRALFDHNG-------------KPIDEATPSQPVEVLGWKDLPIAG 401 (683)
T ss_pred CCccceeEEEEeccccccccEE-EEec---hhhhhhhhhhcCC-------------CCccccCCCCceEeecccCCCCCC
Confidence 9999999999999999999965 4654 4899999987652 22332 2455556669987 7999
Q ss_pred CceEEcCCcchHHHHHHHHHH---------H---H----H---HHH--------h-----hhhccC----CceEEEcCCc
Q 000728 1106 TGLYVVGPDDDLEDVKEEAME---------D---M----K---SVM--------S-----RIDKSG----EGVCVQASTL 1149 (1326)
Q Consensus 1106 ~~~~v~~~~~~~~~~~~~~~~---------~---~----~---~~~--------~-----~~~~~~----~gvivkadt~ 1149 (1326)
+-++.|.+++.++.+...... . + . +.+ . +++... .++|||+|++
T Consensus 402 D~vleVeSe~~Ar~~~~~R~~~~~~Ek~~~~~e~~~~~~~~~~~~~~a~r~~~~~~~~~~~v~~~~~~~~~niIiK~DV~ 481 (683)
T KOG1145|consen 402 DEVLEVESEDRARKVLSKRKDESEQEKISRDLEDIEEQREEAAEALLAKREEGENIGRKTRVELHEQNPLFNIIIKCDVQ 481 (683)
T ss_pred ceEEEEecHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhhccccceecccccCCcceEEEEEeccc
Confidence 999999999877655321110 0 0 0 000 0 122222 4699999999
Q ss_pred ccHHHHHHHh---ccCCceeeEEEeecCccccchHHHHhhhccccCcccEEEEeCCCCCHHHHHHHHHcCCeEEEcchHh
Q 000728 1150 GSLEALLEFL---KSDAVKIPVSGISIGPVHKKDVMRASVMLEKKKEYATILAFDVKVTPEARELAEELGVKIFIADIIY 1226 (1326)
Q Consensus 1150 GSlEAl~~~L---~~~~v~i~v~~~~vG~V~~~DV~~A~~~~~~~~~~a~IlaFnvkv~~~a~~~A~~~gV~I~~~~IIY 1226 (1326)
||+|||++.| .+++|+++|+++|||+||++||.+|.+ +.|||+||||+.++...++|...||+|+.|||||
T Consensus 482 GS~EAv~d~L~tl~~~~v~l~~v~~gVG~vtesDlelA~~------~daiI~~FnV~~~~~~~~~a~~~gVkI~~~nVIY 555 (683)
T KOG1145|consen 482 GSAEAVLDALSTLNSEQVKLNVVHSGVGPVTESDLELAQA------SDAIIYGFNVKASPSVKQLAAAKGVKIRLYNVIY 555 (683)
T ss_pred chHHHHHHHHhhcCCCceEEEEEEeccCCCCcchhHHHHh------cCcEEEEEecCCChHHHHHHhccCceEeehhHHH
Confidence 9999999876 567899999999999999999999998 6999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhHHHHh-hhcceeccceeeeecccccCC--CCCeEEEEEEeeeEEeeCCeeEEEEecCCeEEEEEe
Q 000728 1227 HLFDQFTAYINNLKEEKKRE-AADEAVFPCVLKILPNCVFNK--KDPIVLGVDVVEGIAKVRMLELQFVFPKGILLILAE 1303 (1326)
Q Consensus 1227 ~L~d~~~~~~~~l~~~~~~e-~~~~av~p~~l~i~~~~vf~~--k~~~IaG~~V~~G~lk~gt~i~~~v~r~g~~i~~g~ 1303 (1326)
||||++++.|...+++..++ ..|+|. ++.+|. |+. +.-.||||+|.+|.|.+.+.+ |+.|+|.+||.|.
T Consensus 556 ~LieDv~~~ls~rlp~v~e~~vvGea~---Vl~~F~---i~~~rkr~~VAGC~V~~G~~~K~~~~--rlvR~g~vV~~G~ 627 (683)
T KOG1145|consen 556 RLIEDVRELLSERLPPVEEQEVVGEAE---VLATFD---IREKRKRVPVAGCRVNNGVIKKSCKI--RLVRNGKVVFEGE 627 (683)
T ss_pred HHHHHHHHHHHhhCCCceEEeecccee---eeeeEe---eccccccccccceEeecceEeecceE--EEEeCCcEEEEec
Confidence 99999999999999887654 468885 445443 332 333599999999999999998 7999999999999
Q ss_pred eeeeeeeecccccCccccC
Q 000728 1304 LRLLKITINPLILPRKARK 1322 (1326)
Q Consensus 1304 i~slk~~k~~~~~~~~~~~ 1322 (1326)
|.||||.|++|+ .+++|
T Consensus 628 l~SlKh~KedV~--~vkkg 644 (683)
T KOG1145|consen 628 LDSLKHLKEDVT--EVKKG 644 (683)
T ss_pred hhHHhhhhhhhh--hhcCC
Confidence 999999999765 45555
No 7
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=100.00 E-value=1.6e-74 Score=709.65 Aligned_cols=452 Identities=32% Similarity=0.455 Sum_probs=370.7
Q ss_pred cCCCCCEEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcc
Q 000728 790 ENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES 869 (1326)
Q Consensus 790 ~~~R~piV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~ 869 (1326)
...|+|+|+||||+|||||||+++|+++++..++.+|||++++++.+.+... ..|+|||||||+.
T Consensus 83 ~~~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~---------------~~i~~iDTPGhe~ 147 (587)
T TIGR00487 83 LVERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG---------------KMITFLDTPGHEA 147 (587)
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCC---------------cEEEEEECCCCcc
Confidence 4579999999999999999999999999999999999999999988766321 1499999999999
Q ss_pred hhhhhhhccCccceeEEeeccccCCchhHHHHHHHHHhcCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHHHHH
Q 000728 870 FTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 949 (1326)
Q Consensus 870 F~~lr~rg~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~e~~ 949 (1326)
|..+|.++++.+|++|||||+++|+++||.++|.++...++|+|||+||||+.. +++
T Consensus 148 F~~~r~rga~~aDiaILVVda~dgv~~qT~e~i~~~~~~~vPiIVviNKiDl~~-------~~~---------------- 204 (587)
T TIGR00487 148 FTSMRARGAKVTDIVVLVVAADDGVMPQTIEAISHAKAANVPIIVAINKIDKPE-------ANP---------------- 204 (587)
T ss_pred hhhHHHhhhccCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECccccc-------CCH----------------
Confidence 999999999999999999999999999999999999999999999999999852 111
Q ss_pred HHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHHHHHhHhhhhhcccccceeEEEEEEEeC
Q 000728 950 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQCTVLEVKVIEG 1029 (1326)
Q Consensus 950 ~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~q~~l~e~l~~~~~~~~~VlEvk~~~G 1029 (1326)
..+...|..+|+... .|+..+++||+||++|.||.+|+.+|..+ ...+.....+..+++|+|++++.++|
T Consensus 205 ---e~v~~~L~~~g~~~~------~~~~~~~~v~iSAktGeGI~eLl~~I~~~-~~~~~l~~~~~~~~~~~V~ev~~~~g 274 (587)
T TIGR00487 205 ---DRVKQELSEYGLVPE------DWGGDTIFVPVSALTGDGIDELLDMILLQ-SEVEELKANPNGQASGVVIEAQLDKG 274 (587)
T ss_pred ---HHHHHHHHHhhhhHH------hcCCCceEEEEECCCCCChHHHHHhhhhh-hhhccccCCCCCCceeEEEEEEEeCC
Confidence 123334444554332 34567899999999999999999998643 22222233456789999999999999
Q ss_pred ceeEEEEEEEeeEecCCCEEEEccCCCceeeeeeeccCCCCCceeeecceeecccccccccceeeecccccc-ccCCCce
Q 000728 1030 HGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAAQGIKITAQGLEH-AIAGTGL 1108 (1326)
Q Consensus 1030 ~Gtvi~giV~~G~Lr~GD~IVl~g~~g~~~~~IR~Ll~p~p~~e~rVk~~~~~~k~v~aa~gv~i~~~gl~~-~~aG~~~ 1108 (1326)
+|++++++|.+|+|++||.|+++ +.+++||+|++++.. ..+.+.+++++ .+.||.. +.+|+.|
T Consensus 275 ~G~v~~~~V~~GtL~~Gd~iv~~----~~~~kVr~l~~~~g~----------~v~~a~~g~~v--~i~Gl~~~p~aGd~~ 338 (587)
T TIGR00487 275 RGPVATVLVQSGTLRVGDIVVVG----AAYGRVRAMIDENGK----------SVKEAGPSKPV--EILGLSDVPAAGDEF 338 (587)
T ss_pred CcEEEEEEEEeCEEeCCCEEEEC----CCccEEEEEECCCCC----------CCCEECCCCEE--EEeCCCCCCCCCCEE
Confidence 99999999999999999999874 346789999875521 11233344444 4459987 5999999
Q ss_pred EEcCCcchHHHHHHHHHHH-------------HHHHHhhhh---ccCCceEEEcCCcccHHHHHHHhc---cCCceeeEE
Q 000728 1109 YVVGPDDDLEDVKEEAMED-------------MKSVMSRID---KSGEGVCVQASTLGSLEALLEFLK---SDAVKIPVS 1169 (1326)
Q Consensus 1109 ~v~~~~~~~~~~~~~~~~~-------------~~~~~~~~~---~~~~gvivkadt~GSlEAl~~~L~---~~~v~i~v~ 1169 (1326)
+++.++++++.+.+..... +.+++..+. ....+|||||||+||||||+++|. +++++++|+
T Consensus 339 ~~~~~e~~a~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viikad~~Gs~eal~~~l~~~~~~~~~~~v~ 418 (587)
T TIGR00487 339 IVFKDEKDARLVAEKRAGKLRQKALSRSVKVTLDNLFEQIKEGELKELNIILKADVQGSLEAIKNSLEKLNNEEVKVKVI 418 (587)
T ss_pred EEcCCHHHHHHHHHHHHHHHHHHhhhhccccchhHhhhhhhccCCceEEEEEEeCCcchHHHHHHHHHhhcccCCeEEEE
Confidence 9999998887665433221 222222222 244689999999999999998864 567899999
Q ss_pred EeecCccccchHHHHhhhccccCcccEEEEeCCCCCHHHHHHHHHcCCeEEEcchHhHHHHHHHHHHhhhhhHHHHhh-h
Q 000728 1170 GISIGPVHKKDVMRASVMLEKKKEYATILAFDVKVTPEARELAEELGVKIFIADIIYHLFDQFTAYINNLKEEKKREA-A 1248 (1326)
Q Consensus 1170 ~~~vG~V~~~DV~~A~~~~~~~~~~a~IlaFnvkv~~~a~~~A~~~gV~I~~~~IIY~L~d~~~~~~~~l~~~~~~e~-~ 1248 (1326)
+++||+||++||++|+++ +|+||||||++++.++++|++.||+|++|+|||||||+|++||.+++++...+. .
T Consensus 419 ~~~vG~i~~~Dv~~a~~~------~a~i~~Fnv~~~~~~~~~a~~~~v~i~~~~iIY~l~d~~~~~~~~~~~~~~~~~~~ 492 (587)
T TIGR00487 419 HSGVGGITETDISLASAS------NAIIIGFNVRPDATAKNVAEAENVDIRYYSVIYKLIDEIRAAMKGMLDPEYEEEII 492 (587)
T ss_pred EeecCCCchhhHHHHHhc------CCEEEEEecCCCHHHHHHHHHcCCeEEEeChHHHHHHHHHHHHHhccCcceeeEee
Confidence 999999999999999984 899999999999999999999999999999999999999999999999876543 4
Q ss_pred cceeccceeeeecccccCC-CCCeEEEEEEeeeEEeeCCeeEEEEecCCeEEEEEeeeeeeeeecccccCccccCC
Q 000728 1249 DEAVFPCVLKILPNCVFNK-KDPIVLGVDVVEGIAKVRMLELQFVFPKGILLILAELRLLKITINPLILPRKARKQ 1323 (1326)
Q Consensus 1249 ~~av~p~~l~i~~~~vf~~-k~~~IaG~~V~~G~lk~gt~i~~~v~r~g~~i~~g~i~slk~~k~~~~~~~~~~~~ 1323 (1326)
|.|. |+. ||+. +.|+||||+|++|+|++|+++ ||+|+|.+||.|+|.||+|++++ +..+++|+
T Consensus 493 g~a~------v~~--vf~~~~~~~iaG~~V~~G~i~~~~~~--~v~r~~~~i~~g~i~sl~~~k~~--v~ev~~g~ 556 (587)
T TIGR00487 493 GQAE------VRQ--VFNVPKIGNIAGCYVTEGVIKRGNPL--RVIRDGVVIFEGEIDSLKRFKDD--VKEVSNGY 556 (587)
T ss_pred eeEE------EEE--EEecCCCCEEEEEEEecCEEecCCeE--EEEeCCEEEEeccchHhhccCcc--ccEECCCC
Confidence 6663 433 7764 669999999999999999999 69999999999999999999995 55667775
No 8
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=100.00 E-value=2e-73 Score=713.19 Aligned_cols=450 Identities=34% Similarity=0.483 Sum_probs=372.7
Q ss_pred cCCCCCEEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcc
Q 000728 790 ENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES 869 (1326)
Q Consensus 790 ~~~R~piV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~ 869 (1326)
...|+|+|+||||+||||||||++|+++++..++.+|||+++|++.+.+.. ..|+|||||||..
T Consensus 286 ~~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~----------------~~ItfiDTPGhe~ 349 (787)
T PRK05306 286 LVPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG----------------GKITFLDTPGHEA 349 (787)
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC----------------EEEEEEECCCCcc
Confidence 367999999999999999999999999999999999999999998876642 2499999999999
Q ss_pred hhhhhhhccCccceeEEeeccccCCchhHHHHHHHHHhcCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHHHHH
Q 000728 870 FTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 949 (1326)
Q Consensus 870 F~~lr~rg~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~e~~ 949 (1326)
|..++.++++.+|++|||||+++|+++||.++|.++...++|+|||+||||+.. | ++
T Consensus 350 F~~m~~rga~~aDiaILVVdAddGv~~qT~e~i~~a~~~~vPiIVviNKiDl~~-a------~~---------------- 406 (787)
T PRK05306 350 FTAMRARGAQVTDIVVLVVAADDGVMPQTIEAINHAKAAGVPIIVAINKIDKPG-A------NP---------------- 406 (787)
T ss_pred chhHHHhhhhhCCEEEEEEECCCCCCHhHHHHHHHHHhcCCcEEEEEECccccc-c------CH----------------
Confidence 999999999999999999999999999999999999999999999999999952 1 11
Q ss_pred HHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHHHHHhHhhhhhcccccceeEEEEEEEeC
Q 000728 950 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQCTVLEVKVIEG 1029 (1326)
Q Consensus 950 ~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~q~~l~e~l~~~~~~~~~VlEvk~~~G 1029 (1326)
..+...|..+++... .|++.++||+|||++|.||.+||.+|+... ..+.....+..++.++|++++..+|
T Consensus 407 ---e~V~~eL~~~~~~~e------~~g~~vp~vpvSAktG~GI~eLle~I~~~~-e~~~l~~~~~~~~~g~V~es~~dkg 476 (787)
T PRK05306 407 ---DRVKQELSEYGLVPE------EWGGDTIFVPVSAKTGEGIDELLEAILLQA-EVLELKANPDRPARGTVIEAKLDKG 476 (787)
T ss_pred ---HHHHHHHHHhcccHH------HhCCCceEEEEeCCCCCCchHHHHhhhhhh-hhhhcccCCCCCcEEEEEEEEEcCC
Confidence 122233333343322 346678999999999999999999987643 2222234456678999999999999
Q ss_pred ceeEEEEEEEeeEecCCCEEEEccCCCceeeeeeeccCCCCCceeeecceeecccccc-cccceeeeccccccc-cCCCc
Q 000728 1030 HGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIK-AAQGIKITAQGLEHA-IAGTG 1107 (1326)
Q Consensus 1030 ~Gtvi~giV~~G~Lr~GD~IVl~g~~g~~~~~IR~Ll~p~p~~e~rVk~~~~~~k~v~-aa~gv~i~~~gl~~~-~aG~~ 1107 (1326)
+|++++++|++|+|+.||.|++ |+.+++||.|++... ..+. +.+|..+.+.||... .+|+.
T Consensus 477 ~G~v~~v~V~sGtLk~Gd~vv~----g~~~gkVr~m~~~~~-------------~~v~~A~pGd~V~I~gl~~~p~~Gd~ 539 (787)
T PRK05306 477 RGPVATVLVQNGTLKVGDIVVA----GTTYGRVRAMVDDNG-------------KRVKEAGPSTPVEILGLSGVPQAGDE 539 (787)
T ss_pred CeEEEEEEEecCeEecCCEEEE----CCcEEEEEEEECCCC-------------CCCCEEcCCCeEEEeCCCCCCCCCCE
Confidence 9999999999999999999876 356889999986532 2223 335666666799885 89999
Q ss_pred eEEcCCcchHHHHHHHHHH-------------HHHHHHhhhhcc---CCceEEEcCCcccHHHHHHHh---ccCCceeeE
Q 000728 1108 LYVVGPDDDLEDVKEEAME-------------DMKSVMSRIDKS---GEGVCVQASTLGSLEALLEFL---KSDAVKIPV 1168 (1326)
Q Consensus 1108 ~~v~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~---~~gvivkadt~GSlEAl~~~L---~~~~v~i~v 1168 (1326)
|+++.++..++.+.+.... .|..++..+... ..+|||||||+||||||..+| .+++++|+|
T Consensus 540 l~~~~~e~~a~~~~~~r~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~iikad~~Gs~eai~~~l~~l~~~~v~~~i 619 (787)
T PRK05306 540 FVVVEDEKKAREIAEYRQEKAREKKLARQQRVSLENLFEQMKEGEVKELNLIIKADVQGSVEALKDSLEKLSTDEVKVNI 619 (787)
T ss_pred EEEcCCHHHHHHHHHHHHHHHHHHHhhhccccCHHHhhhhhhcCCceEEEEEEEeCCcchHHHHHHHHHhhcccCCceEE
Confidence 9999999887766443221 133333344322 358999999999999998765 467899999
Q ss_pred EEeecCccccchHHHHhhhccccCcccEEEEeCCCCCHHHHHHHHHcCCeEEEcchHhHHHHHHHHHHhhhhhHHHHhh-
Q 000728 1169 SGISIGPVHKKDVMRASVMLEKKKEYATILAFDVKVTPEARELAEELGVKIFIADIIYHLFDQFTAYINNLKEEKKREA- 1247 (1326)
Q Consensus 1169 ~~~~vG~V~~~DV~~A~~~~~~~~~~a~IlaFnvkv~~~a~~~A~~~gV~I~~~~IIY~L~d~~~~~~~~l~~~~~~e~- 1247 (1326)
++++||+||++||++|++ ++|+||||||++++.++.+|++.||.|++|+|||||||+|+++|.+++.+...+.
T Consensus 620 ~~~~vG~it~~Dv~la~~------~~a~ii~Fnv~~~~~~~~~a~~~~v~i~~~~iIY~l~d~~~~~~~~~l~~~~~e~~ 693 (787)
T PRK05306 620 IHSGVGAITESDVTLAAA------SNAIIIGFNVRPDAKARKLAEQEGVDIRYYSIIYDLIDDVKAAMSGMLEPEYEEEI 693 (787)
T ss_pred EeeccCCCCHHHHHHHHh------cCCEEEEEcCCCCHHHHHHHHHcCCEEEEeChHHHHHHHHHHHHhhccCchhheee
Confidence 999999999999999998 5899999999999999999999999999999999999999999999999887664
Q ss_pred hcceeccceeeeecccccC-CCCCeEEEEEEeeeEEeeCCeeEEEEecCCeEEEEEeeeeeeeeecccccCccccCC
Q 000728 1248 ADEAVFPCVLKILPNCVFN-KKDPIVLGVDVVEGIAKVRMLELQFVFPKGILLILAELRLLKITINPLILPRKARKQ 1323 (1326)
Q Consensus 1248 ~~~av~p~~l~i~~~~vf~-~k~~~IaG~~V~~G~lk~gt~i~~~v~r~g~~i~~g~i~slk~~k~~~~~~~~~~~~ 1323 (1326)
.|.|. |+ .||+ ++.|.||||+|++|+|++|++| ||+|+|.+||.|+|.||+|++++| ..+++|+
T Consensus 694 ~g~a~------v~--~vF~~~k~~~iaGc~V~~G~i~~~~~~--rv~R~~~~i~~g~i~slk~~k~~v--~ev~~g~ 758 (787)
T PRK05306 694 IGQAE------VR--EVFKVSKVGTIAGCMVTEGKIKRNAKV--RVLRDGVVIYEGELESLKRFKDDV--KEVRAGY 758 (787)
T ss_pred eeeEE------EE--EEEecCCCCeEEEEEEeeCEEecCCeE--EEEeCCEEEEEeEEehhcccCcCc--cEeCCCC
Confidence 57774 33 2676 4569999999999999999998 699999999999999999999965 4556664
No 9
>CHL00189 infB translation initiation factor 2; Provisional
Probab=100.00 E-value=5.7e-72 Score=694.19 Aligned_cols=453 Identities=30% Similarity=0.425 Sum_probs=367.7
Q ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcch
Q 000728 791 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF 870 (1326)
Q Consensus 791 ~~R~piV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F 870 (1326)
..|+|+|+||||+|||||||+++|+.+++..++.+|||++++++.+.+... -....|+|||||||..|
T Consensus 241 ~~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~------------~~~~kItfiDTPGhe~F 308 (742)
T CHL00189 241 INRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYK------------DENQKIVFLDTPGHEAF 308 (742)
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEec------------CCceEEEEEECCcHHHH
Confidence 458899999999999999999999999998888999999999887655310 01245999999999999
Q ss_pred hhhhhhccCccceeEEeeccccCCchhHHHHHHHHHhcCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHHHHHH
Q 000728 871 TNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 950 (1326)
Q Consensus 871 ~~lr~rg~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~e~~~ 950 (1326)
..+|.+++..||++|||||+++|+++||+++|.++...++|+|||+||||++. .++
T Consensus 309 ~~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~~~iPiIVViNKiDl~~-------~~~----------------- 364 (742)
T CHL00189 309 SSMRSRGANVTDIAILIIAADDGVKPQTIEAINYIQAANVPIIVAINKIDKAN-------ANT----------------- 364 (742)
T ss_pred HHHHHHHHHHCCEEEEEEECcCCCChhhHHHHHHHHhcCceEEEEEECCCccc-------cCH-----------------
Confidence 99999999999999999999999999999999999999999999999999862 111
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHHHHHhHhhhhhcccccceeEEEEEEEeCc
Q 000728 951 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQCTVLEVKVIEGH 1030 (1326)
Q Consensus 951 ~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~q~~l~e~l~~~~~~~~~VlEvk~~~G~ 1030 (1326)
..+...|..+++.+. .|++.++||+|||++|.||.+|+.+|+.+.. .+.....+..++.++|++++..+|.
T Consensus 365 --e~v~~eL~~~~ll~e------~~g~~vpvv~VSAktG~GIdeLle~I~~l~e-~~~lk~~~~~~~~g~V~e~~iD~~~ 435 (742)
T CHL00189 365 --ERIKQQLAKYNLIPE------KWGGDTPMIPISASQGTNIDKLLETILLLAE-IEDLKADPTQLAQGIILEAHLDKTK 435 (742)
T ss_pred --HHHHHHHHHhccchH------hhCCCceEEEEECCCCCCHHHHHHhhhhhhh-hhcccCCCCCCceEEEEEEEEcCCC
Confidence 122233333333221 2456789999999999999999999876643 2222234456788999999999999
Q ss_pred eeEEEEEEEeeEecCCCEEEEccCCCceeeeeeeccCCCCCceeeecceeecccccc-cccceeeecccccc-ccCCCce
Q 000728 1031 GTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIK-AAQGIKITAQGLEH-AIAGTGL 1108 (1326)
Q Consensus 1031 Gtvi~giV~~G~Lr~GD~IVl~g~~g~~~~~IR~Ll~p~p~~e~rVk~~~~~~k~v~-aa~gv~i~~~gl~~-~~aG~~~ 1108 (1326)
|++++++|.+|+|+.||.|+++ +.+++||.|+++.. ..+. +.+|..+.+.||.. +.+|+.|
T Consensus 436 G~V~~~~V~sGtLr~GD~vv~g----~~~gkVr~m~~~~~-------------~~v~~a~pgdiV~I~gl~~~~~~Gd~l 498 (742)
T CHL00189 436 GPVATILVQNGTLHIGDIIVIG----TSYAKIRGMINSLG-------------NKINLATPSSVVEIWGLSSVPATGEHF 498 (742)
T ss_pred ceEEEEEEEcCEEecCCEEEEC----CcceEEEEEEcCCC-------------cCccEEcCCCceEecCcccCCCCCCEE
Confidence 9999999999999999998763 35678999875542 1222 33555666789954 6789999
Q ss_pred EEcCCcchHHHHHHHHHHHH----------HHHH---hhhhccCCceEEEcCCcccHHHHHHHhc---cCCceeeEEEee
Q 000728 1109 YVVGPDDDLEDVKEEAMEDM----------KSVM---SRIDKSGEGVCVQASTLGSLEALLEFLK---SDAVKIPVSGIS 1172 (1326)
Q Consensus 1109 ~v~~~~~~~~~~~~~~~~~~----------~~~~---~~~~~~~~gvivkadt~GSlEAl~~~L~---~~~v~i~v~~~~ 1172 (1326)
+++.++..++.+........ ..+. ........+|||||||+||||||+.+|. +++|+|+|++++
T Consensus 499 ~v~~~e~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiKad~~Gs~EAi~~~l~~~~~~~v~i~i~~~~ 578 (742)
T CHL00189 499 QVFNSEKEAKLKIIKNKENNKKDTTKRITLSTTKTINKKDNKKQINLIIKTDTQGSIEAIINSISQIPQKKVQLNILYAS 578 (742)
T ss_pred EEeCCHHHHHHHHHHHHHHHHHhhhcccchHHHHHHhhhcCCceeeEEEEeCCcchHHHHHHHHHhcCCCcEEEEEEEee
Confidence 99999888876644322111 1111 1223345689999999999999998874 567999999999
Q ss_pred cCccccchHHHHhhhccccCcccEEEEeCCCCCHHHHHHHHHcCCeEEEcchHhHHHHHHHHHHhhhhhHHHHhh-hcce
Q 000728 1173 IGPVHKKDVMRASVMLEKKKEYATILAFDVKVTPEARELAEELGVKIFIADIIYHLFDQFTAYINNLKEEKKREA-ADEA 1251 (1326)
Q Consensus 1173 vG~V~~~DV~~A~~~~~~~~~~a~IlaFnvkv~~~a~~~A~~~gV~I~~~~IIY~L~d~~~~~~~~l~~~~~~e~-~~~a 1251 (1326)
||+||++||++|++ ++|+||||||++++.++.+|++.||+|++|+|||||||+|+++|.+++++...+. .|.|
T Consensus 579 vG~it~~Dv~lA~~------~~a~ii~Fnv~~~~~~~~~a~~~~v~i~~~~iIY~lid~~~~~~~~~l~~~~~~~~~g~a 652 (742)
T CHL00189 579 LGEVTETDVEFAST------TNAEILAFNTNLAPGAKKAARKLNIIIKEYQVIYDLLEYIEALMEDLLDPEYKKVPIGEA 652 (742)
T ss_pred cCCCCHHHHHHHHh------cCCEEEEeeCCCCHHHHHHHHHcCCEEEEeChHHHHHHHHHHHHhhccCceeeeeeceeE
Confidence 99999999999998 5899999999999999999999999999999999999999999999999876554 4666
Q ss_pred eccceeeeecccccCCCCCeEEEEEEeeeEEeeCCeeEEEEecCCeEEEEEeeeeeeeeecccccCccccCC
Q 000728 1252 VFPCVLKILPNCVFNKKDPIVLGVDVVEGIAKVRMLELQFVFPKGILLILAELRLLKITINPLILPRKARKQ 1323 (1326)
Q Consensus 1252 v~p~~l~i~~~~vf~~k~~~IaG~~V~~G~lk~gt~i~~~v~r~g~~i~~g~i~slk~~k~~~~~~~~~~~~ 1323 (1326)
. |. .||+.+.|.||||+|++|+|++|++| ||||+|.+||.|+|.||+|++++| ..+++|+
T Consensus 653 ~------v~--~vF~~~k~~iaGc~V~~G~i~~~~~~--rv~R~~~~i~~G~i~slk~~k~~v--~ev~~g~ 712 (742)
T CHL00189 653 E------VK--TVFPLAKRFVAGCRVTEGKITKNALI--KVIRENKLIYEGKITSLKRVKEDV--EEAQEGN 712 (742)
T ss_pred E------ee--EEEecCCCEEEEEEEecCEEecCCeE--EEEeCCeEEEEeEEhhHhhcCccc--cEeCCCC
Confidence 3 33 37775569999999999999999998 799999999999999999999955 4566665
No 10
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=1.8e-31 Score=305.30 Aligned_cols=261 Identities=26% Similarity=0.391 Sum_probs=201.3
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCc--c-----------------------------cccccCceeeeeeeeEeccccch
Q 000728 794 SPICCIMGHVDTGKTKLLDCIRGTN--V-----------------------------QEGEAGGITQQIGATYFPAENIR 842 (1326)
Q Consensus 794 ~piV~IlGhvdaGKTTLLd~L~~~~--v-----------------------------~~ge~gGITq~iga~~~~~~~~~ 842 (1326)
..+|+|+||||||||||+.+|++.. + .....+|+|.+++...|.++
T Consensus 7 h~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~--- 83 (428)
T COG5256 7 HLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETD--- 83 (428)
T ss_pred ceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecC---
Confidence 3569999999999999999998531 1 11123555555555555443
Q ss_pred hhhhhhccccccCCCCEEEEeCCCCcchhhhhhhccCccceeEEeeccccC-------CchhHHHHHHHHHhcCC-cEEE
Q 000728 843 ERTRELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHG-------LEPQTIESLNLLKMRNT-EFIV 914 (1326)
Q Consensus 843 ~~~~~v~~~~~~~~~~I~IIDTPGhe~F~~lr~rg~~~aDiaILVVDa~~G-------v~~QT~E~l~~l~~~~v-P~IV 914 (1326)
.+.|+|||||||.+|...+..|++++|++|||||+..| +.+||++|+.+++.+++ .+||
T Consensus 84 -------------k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIV 150 (428)
T COG5256 84 -------------KYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIV 150 (428)
T ss_pred -------------CceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceEEE
Confidence 24599999999999999999999999999999999988 89999999999999997 5899
Q ss_pred EEeccccccCcccCCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhh
Q 000728 915 ALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPD 994 (1326)
Q Consensus 915 vINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~e~~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~e 994 (1326)
++||||.+. |++. +|......+...+...|++. .+++||||||++|.||..
T Consensus 151 avNKMD~v~-wde~------------------rf~ei~~~v~~l~k~~G~~~----------~~v~FIPiSg~~G~Nl~~ 201 (428)
T COG5256 151 AVNKMDLVS-WDEE------------------RFEEIVSEVSKLLKMVGYNP----------KDVPFIPISGFKGDNLTK 201 (428)
T ss_pred EEEcccccc-cCHH------------------HHHHHHHHHHHHHHHcCCCc----------cCCeEEecccccCCcccc
Confidence 999999984 7653 34444555555566777763 358999999999999987
Q ss_pred HHHHHHHHHHHhHhhhhhc--------ccccceeEEEEEEEeCceeEEEEEEEeeEecCCCEEEEccCCCceeeeeeecc
Q 000728 995 LLLLLVQWTQKTMVEKLTF--------RNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALL 1066 (1326)
Q Consensus 995 Ll~~L~~~~q~~l~e~l~~--------~~~~~~~VlEvk~~~G~Gtvi~giV~~G~Lr~GD~IVl~g~~g~~~~~IR~Ll 1066 (1326)
.-...-||-.++|++.|+. +.||+++|.+++.+.|.|++..++|..|.|++||.|++.+.+
T Consensus 202 ~s~~~pWY~GpTLleaLd~~~~p~~~~d~Plr~pI~~v~~i~~~gtv~vGrVEsG~i~~g~~v~~~p~~----------- 270 (428)
T COG5256 202 KSENMPWYKGPTLLEALDQLEPPERPLDKPLRLPIQDVYSISGIGTVPVGRVESGVIKPGQKVTFMPAG----------- 270 (428)
T ss_pred cCcCCcCccCChHHHHHhccCCCCCCCCCCeEeEeeeEEEecCCceEEEEEEeeeeeccCCEEEEecCc-----------
Confidence 6655555555666666642 457899999999999999999999999999999999986543
Q ss_pred CCCCCceeeecceeeccccccccc-c--eeeeccccccccCCCceEEcCCcc
Q 000728 1067 TPHPMKELRVKGTYLHHKQIKAAQ-G--IKITAQGLEHAIAGTGLYVVGPDD 1115 (1326)
Q Consensus 1067 ~p~p~~e~rVk~~~~~~k~v~aa~-g--v~i~~~gl~~~~aG~~~~v~~~~~ 1115 (1326)
...+|+++++||.++..|. | |.+.++|+.......+.++.+++.
T Consensus 271 -----~~~evksie~~~~~~~~a~~GD~i~~~vrgv~~~dI~~Gdv~~~~~n 317 (428)
T COG5256 271 -----VVGEVKSIEMHHEEISQAEPGDNVGFNVRGVEKNDIRRGDVIGHSDN 317 (428)
T ss_pred -----ceEEEeeeeecccccccCCCCCeEEEEecCCchhccCCccEeccCCC
Confidence 2345778888988887764 3 677778876655555555555543
No 11
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.97 E-value=1.6e-30 Score=322.17 Aligned_cols=254 Identities=29% Similarity=0.406 Sum_probs=196.8
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCc---ccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchh
Q 000728 795 PICCIMGHVDTGKTKLLDCIRGTN---VQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 871 (1326)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~~~---v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~ 871 (1326)
.+|+++||+|||||||+++|++.. +.....+|||++++..++.+.. ..++|||||||+.|.
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~----------------~~v~~iDtPGhe~f~ 64 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD----------------YRLGFIDVPGHEKFI 64 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC----------------EEEEEEECCCHHHHH
Confidence 379999999999999999999743 3334467999999877766543 249999999999999
Q ss_pred hhhhhccCccceeEEeeccccCCchhHHHHHHHHHhcCCc-EEEEEeccccccCcccCCCchHHHHHHHhhHHHHHHHHH
Q 000728 872 NLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTE-FIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 950 (1326)
Q Consensus 872 ~lr~rg~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~vP-~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~e~~~ 950 (1326)
.++..++..+|++|||||+++|+++||.+++.++...++| +|||+||||++. ... +..
T Consensus 65 ~~~~~g~~~aD~aILVVDa~~G~~~qT~ehl~il~~lgi~~iIVVlNK~Dlv~-------~~~--------------~~~ 123 (581)
T TIGR00475 65 SNAIAGGGGIDAALLVVDADEGVMTQTGEHLAVLDLLGIPHTIVVITKADRVN-------EEE--------------IKR 123 (581)
T ss_pred HHHHhhhccCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCCCCC-------HHH--------------HHH
Confidence 9999999999999999999999999999999999999999 999999999962 110 111
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHHHHHhHhhhhhcccccceeEEEEEEEeCc
Q 000728 951 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQCTVLEVKVIEGH 1030 (1326)
Q Consensus 951 ~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~q~~l~e~l~~~~~~~~~VlEvk~~~G~ 1030 (1326)
....+...+...++ ...+++|+|||++|.||.+|+..|..++..... .....+++++|..+|.+.|.
T Consensus 124 ~~~ei~~~l~~~~~-----------~~~~~ii~vSA~tG~GI~eL~~~L~~l~~~~~~--~~~~~p~r~~Id~~f~v~G~ 190 (581)
T TIGR00475 124 TEMFMKQILNSYIF-----------LKNAKIFKTSAKTGQGIGELKKELKNLLESLDI--KRIQKPLRMAIDRAFKVKGA 190 (581)
T ss_pred HHHHHHHHHHHhCC-----------CCCCcEEEEeCCCCCCchhHHHHHHHHHHhCCC--cCcCCCcEEEEEEEEecCCc
Confidence 11222233333332 124799999999999999999988776653211 12356899999999999999
Q ss_pred eeEEEEEEEeeEecCCCEEEEccCCCceeeeeeeccCCCCCceeeecceeecccccccc---cceeeeccccccccCCCc
Q 000728 1031 GTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAA---QGIKITAQGLEHAIAGTG 1107 (1326)
Q Consensus 1031 Gtvi~giV~~G~Lr~GD~IVl~g~~g~~~~~IR~Ll~p~p~~e~rVk~~~~~~k~v~aa---~gv~i~~~gl~~~~aG~~ 1107 (1326)
|++++|.|.+|+|++||.|+++|.+ ..++|+++++|++.+..| +.+.|.+.|++......|
T Consensus 191 GtVv~G~v~~G~i~~Gd~l~i~P~~----------------~~~~Vr~iq~~~~~v~~a~aG~rval~L~~i~~~~i~rG 254 (581)
T TIGR00475 191 GTVVTGTAFSGEVKVGDNLRLLPIN----------------HEVRVKAIQAQNQDVEIAYAGQRIALNLMDVEPESLKRG 254 (581)
T ss_pred EEEEEEEEecceEecCCEEEECCCC----------------ceEEEeEEEECCccCCEEECCCEEEEEeCCCCHHHcCCc
Confidence 9999999999999999999987643 135677777887776654 457888888876555566
Q ss_pred eEEcCCc
Q 000728 1108 LYVVGPD 1114 (1326)
Q Consensus 1108 ~~v~~~~ 1114 (1326)
++++.+.
T Consensus 255 ~~~~~~~ 261 (581)
T TIGR00475 255 LLILTPE 261 (581)
T ss_pred eEEcCCC
Confidence 6665554
No 12
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.97 E-value=1.4e-30 Score=323.54 Aligned_cols=252 Identities=29% Similarity=0.438 Sum_probs=193.8
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCc---ccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchh
Q 000728 795 PICCIMGHVDTGKTKLLDCIRGTN---VQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 871 (1326)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~~~---v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~ 871 (1326)
.||+++||+|||||||+++|++.+ +.....+|||++++..++.... ...|+|||||||+.|.
T Consensus 1 ~ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~---------------g~~i~~IDtPGhe~fi 65 (614)
T PRK10512 1 MIIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPD---------------GRVLGFIDVPGHEKFL 65 (614)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCC---------------CcEEEEEECCCHHHHH
Confidence 479999999999999999999754 3334457999999876654321 1248999999999999
Q ss_pred hhhhhccCccceeEEeeccccCCchhHHHHHHHHHhcCCc-EEEEEeccccccCcccCCCchHHHHHHHhhHHHHHHHHH
Q 000728 872 NLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTE-FIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 950 (1326)
Q Consensus 872 ~lr~rg~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~vP-~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~e~~~ 950 (1326)
..+..++..+|++|||||+++|+++||.+++.++...++| +|||+||||++.. . .+..
T Consensus 66 ~~m~~g~~~~D~~lLVVda~eg~~~qT~ehl~il~~lgi~~iIVVlNKiDlv~~-------~--------------~~~~ 124 (614)
T PRK10512 66 SNMLAGVGGIDHALLVVACDDGVMAQTREHLAILQLTGNPMLTVALTKADRVDE-------A--------------RIAE 124 (614)
T ss_pred HHHHHHhhcCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCccCCH-------H--------------HHHH
Confidence 9999999999999999999999999999999999999988 4799999998621 0 1111
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHHHHHhHhhhhhcccccceeEEEEEEEeCc
Q 000728 951 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQCTVLEVKVIEGH 1030 (1326)
Q Consensus 951 ~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~q~~l~e~l~~~~~~~~~VlEvk~~~G~ 1030 (1326)
....+...+...++ ..++||||||++|.||++|+..|..+.... -....+++++|..+|.++|.
T Consensus 125 v~~ei~~~l~~~~~------------~~~~ii~VSA~tG~gI~~L~~~L~~~~~~~----~~~~~~~rl~Id~vf~v~G~ 188 (614)
T PRK10512 125 VRRQVKAVLREYGF------------AEAKLFVTAATEGRGIDALREHLLQLPERE----HAAQHRFRLAIDRAFTVKGA 188 (614)
T ss_pred HHHHHHHHHHhcCC------------CCCcEEEEeCCCCCCCHHHHHHHHHhhccc----cCcCCCceEEEEEEeccCCC
Confidence 22233334443333 236899999999999999999987654321 12456899999999999999
Q ss_pred eeEEEEEEEeeEecCCCEEEEccCCCceeeeeeeccCCCCCceeeecceeecccccccc---cceeeeccc-cccccCCC
Q 000728 1031 GTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAA---QGIKITAQG-LEHAIAGT 1106 (1326)
Q Consensus 1031 Gtvi~giV~~G~Lr~GD~IVl~g~~g~~~~~IR~Ll~p~p~~e~rVk~~~~~~k~v~aa---~gv~i~~~g-l~~~~aG~ 1106 (1326)
|+|++|+|.+|+|++||.|+++|.+ ..++|+++++|+..+..| +.+.|.+.| ++......
T Consensus 189 GtVvtGtv~sG~l~~Gd~v~i~p~~----------------~~~~VrsIq~~~~~v~~a~aG~rval~l~g~~~~~~i~r 252 (614)
T PRK10512 189 GLVVTGTALSGEVKVGDTLWLTGVN----------------KPMRVRGLHAQNQPTEQAQAGQRIALNIAGDAEKEQINR 252 (614)
T ss_pred eEEEEEEEecceEecCCEEEEcCCC----------------CcEEEEEEecCCcCCCEEeCCCeEEEEecCCCChhhCCC
Confidence 9999999999999999999987643 124567777777766654 346677776 76656667
Q ss_pred ceEEcCCc
Q 000728 1107 GLYVVGPD 1114 (1326)
Q Consensus 1107 ~~~v~~~~ 1114 (1326)
+.+++.+.
T Consensus 253 Gdvl~~~~ 260 (614)
T PRK10512 253 GDWLLADA 260 (614)
T ss_pred cCEEeCCC
Confidence 77776653
No 13
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.97 E-value=1.2e-30 Score=314.34 Aligned_cols=259 Identities=24% Similarity=0.318 Sum_probs=190.4
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCc--cc-----------------------------ccccCceeeeeeeeEeccccchh
Q 000728 795 PICCIMGHVDTGKTKLLDCIRGTN--VQ-----------------------------EGEAGGITQQIGATYFPAENIRE 843 (1326)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~~~--v~-----------------------------~ge~gGITq~iga~~~~~~~~~~ 843 (1326)
.+|+|+||+|||||||+++|+... +. ....+|+|.+++.+.+.+.
T Consensus 8 ~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~---- 83 (446)
T PTZ00141 8 INLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETP---- 83 (446)
T ss_pred EEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccC----
Confidence 469999999999999999998521 11 1123567776665555433
Q ss_pred hhhhhccccccCCCCEEEEeCCCCcchhhhhhhccCccceeEEeeccccCC-------chhHHHHHHHHHhcCCc-EEEE
Q 000728 844 RTRELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGL-------EPQTIESLNLLKMRNTE-FIVA 915 (1326)
Q Consensus 844 ~~~~v~~~~~~~~~~I~IIDTPGhe~F~~lr~rg~~~aDiaILVVDa~~Gv-------~~QT~E~l~~l~~~~vP-~IVv 915 (1326)
...|+|||||||.+|...+.++++.+|++|||||+..|+ .+||.+||.++..+++| +|||
T Consensus 84 ------------~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi~~iiv~ 151 (446)
T PTZ00141 84 ------------KYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLGVKQMIVC 151 (446)
T ss_pred ------------CeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCCCeEEEE
Confidence 346999999999999999999999999999999999997 48999999999999998 6799
Q ss_pred Eecccccc-CcccCCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhh
Q 000728 916 LNKVDRLY-GWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPD 994 (1326)
Q Consensus 916 INKiD~~~-~w~~~~~a~~~~~L~~q~~~~~~e~~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~e 994 (1326)
+||||+.. .|. ...|...+..+...|...|++. ..++|||+||++|+||.+
T Consensus 152 vNKmD~~~~~~~------------------~~~~~~i~~~i~~~l~~~g~~~----------~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 152 INKMDDKTVNYS------------------QERYDEIKKEVSAYLKKVGYNP----------EKVPFIPISGWQGDNMIE 203 (446)
T ss_pred EEccccccchhh------------------HHHHHHHHHHHHHHHHhcCCCc----------ccceEEEeecccCCCccc
Confidence 99999631 232 2234444556666676666642 248999999999999975
Q ss_pred HHHHHHHHHHHhHhhhh--------hcccccceeEEEEEEEeCceeEEEEEEEeeEecCCCEEEEccCCCceeeeeeecc
Q 000728 995 LLLLLVQWTQKTMVEKL--------TFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALL 1066 (1326)
Q Consensus 995 Ll~~L~~~~q~~l~e~l--------~~~~~~~~~VlEvk~~~G~Gtvi~giV~~G~Lr~GD~IVl~g~~g~~~~~IR~Ll 1066 (1326)
.-..+.||....+++.| ....|++++|.++|.+.|.|++++|+|.+|+|++||.|++++.+ .
T Consensus 204 ~~~~~~Wy~G~tL~~~l~~~~~~~~~~~~p~r~~I~~v~~v~g~Gtvv~G~V~~G~l~~Gd~v~i~P~~--~-------- 273 (446)
T PTZ00141 204 KSDNMPWYKGPTLLEALDTLEPPKRPVDKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVTFAPSG--V-------- 273 (446)
T ss_pred CCCCCcccchHHHHHHHhCCCCCCcCCCCCeEEEEEEEEecCCceEEEEEEEEcceEecCCEEEEccCC--c--------
Confidence 33222222222222222 12457899999999999999999999999999999999887643 2
Q ss_pred CCCCCceeeecceeecccccccc---cceeeeccccccccCCCceEEcCC
Q 000728 1067 TPHPMKELRVKGTYLHHKQIKAA---QGIKITAQGLEHAIAGTGLYVVGP 1113 (1326)
Q Consensus 1067 ~p~p~~e~rVk~~~~~~k~v~aa---~gv~i~~~gl~~~~aG~~~~v~~~ 1113 (1326)
..+|+++++|+..+..| ..+.|.+.|++......+++++.+
T Consensus 274 ------~~~VksI~~~~~~~~~a~aG~~v~i~L~~i~~~~v~rG~vl~~~ 317 (446)
T PTZ00141 274 ------TTEVKSVEMHHEQLAEAVPGDNVGFNVKNVSVKDIKRGYVASDS 317 (446)
T ss_pred ------EEEEEEEEecCcccCEECCCCEEEEEECCCCHHHcCCceEEecC
Confidence 24556666776655544 447777778766556667777654
No 14
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.97 E-value=4.5e-30 Score=309.07 Aligned_cols=259 Identities=23% Similarity=0.301 Sum_probs=190.4
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCc--cc-----------------------------ccccCceeeeeeeeEeccccchh
Q 000728 795 PICCIMGHVDTGKTKLLDCIRGTN--VQ-----------------------------EGEAGGITQQIGATYFPAENIRE 843 (1326)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~~~--v~-----------------------------~ge~gGITq~iga~~~~~~~~~~ 843 (1326)
.+|+|+||+|||||||+++|+... +. ....+|||.+++.+++.+
T Consensus 8 ~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~----- 82 (447)
T PLN00043 8 INIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFET----- 82 (447)
T ss_pred EEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecC-----
Confidence 459999999999999999998421 10 111345666555444443
Q ss_pred hhhhhccccccCCCCEEEEeCCCCcchhhhhhhccCccceeEEeeccccCC-------chhHHHHHHHHHhcCCc-EEEE
Q 000728 844 RTRELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGL-------EPQTIESLNLLKMRNTE-FIVA 915 (1326)
Q Consensus 844 ~~~~v~~~~~~~~~~I~IIDTPGhe~F~~lr~rg~~~aDiaILVVDa~~Gv-------~~QT~E~l~~l~~~~vP-~IVv 915 (1326)
..+.|+|||||||.+|...+..|++.+|++|||||+..|. .+||++||.++...++| +|||
T Consensus 83 -----------~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~~iIV~ 151 (447)
T PLN00043 83 -----------TKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICC 151 (447)
T ss_pred -----------CCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCCcEEEE
Confidence 2346999999999999999999999999999999999873 28999999999999996 7889
Q ss_pred Eecccccc-CcccCCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhh
Q 000728 916 LNKVDRLY-GWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPD 994 (1326)
Q Consensus 916 INKiD~~~-~w~~~~~a~~~~~L~~q~~~~~~e~~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~e 994 (1326)
+||||+.. .| ....|...+..+...|...|++. ..++|||+||++|+||.+
T Consensus 152 vNKmD~~~~~~------------------~~~~~~~i~~ei~~~l~~~g~~~----------~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 152 CNKMDATTPKY------------------SKARYDEIVKEVSSYLKKVGYNP----------DKIPFVPISGFEGDNMIE 203 (447)
T ss_pred EEcccCCchhh------------------hHHHHHHHHHHHHHHHHHcCCCc----------ccceEEEEeccccccccc
Confidence 99999851 12 12345555566677777777642 247999999999999965
Q ss_pred HHHHHHHHHHHhHhhhhh--------cccccceeEEEEEEEeCceeEEEEEEEeeEecCCCEEEEccCCCceeeeeeecc
Q 000728 995 LLLLLVQWTQKTMVEKLT--------FRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALL 1066 (1326)
Q Consensus 995 Ll~~L~~~~q~~l~e~l~--------~~~~~~~~VlEvk~~~G~Gtvi~giV~~G~Lr~GD~IVl~g~~g~~~~~IR~Ll 1066 (1326)
....+.|+-.+.+++.|. ...||+++|.++|.+.|.|+++.|+|.+|+|++||.|++++++ .
T Consensus 204 ~~~~~~Wy~g~tLl~~l~~i~~p~~~~~~plr~~I~~v~~~~g~G~vv~G~V~~G~l~~Gd~v~~~P~~--~-------- 273 (447)
T PLN00043 204 RSTNLDWYKGPTLLEALDQINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFGPTG--L-------- 273 (447)
T ss_pred cccCCcccchHHHHHHHhhcCCCccccCCCcEEEEEEEEEeCCcEEEEEEEEECCEEeeCCEEEEcCCC--C--------
Confidence 433222222222222221 2457999999999999999999999999999999999886543 1
Q ss_pred CCCCCceeeecceeecccccccc---cceeeeccccccccCCCceEEcCC
Q 000728 1067 TPHPMKELRVKGTYLHHKQIKAA---QGIKITAQGLEHAIAGTGLYVVGP 1113 (1326)
Q Consensus 1067 ~p~p~~e~rVk~~~~~~k~v~aa---~gv~i~~~gl~~~~aG~~~~v~~~ 1113 (1326)
..+|+++++|+..+..| ..+.|.+.+++......+++++..
T Consensus 274 ------~~~VksI~~~~~~v~~a~aGd~v~i~l~~~~~~~i~rG~vl~~~ 317 (447)
T PLN00043 274 ------TTEVKSVEMHHESLQEALPGDNVGFNVKNVAVKDLKRGYVASNS 317 (447)
T ss_pred ------EEEEEEEEECCeEeCEecCCCeEEEEECCCCHhhCCCccEEccC
Confidence 34566777777766654 347788888876666777777654
No 15
>PRK12736 elongation factor Tu; Reviewed
Probab=99.97 E-value=9e-30 Score=303.09 Aligned_cols=257 Identities=24% Similarity=0.352 Sum_probs=187.3
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCcc----------------cccccCceeeeeeeeEeccccchhhhhhhccccccCCC
Q 000728 794 SPICCIMGHVDTGKTKLLDCIRGTNV----------------QEGEAGGITQQIGATYFPAENIRERTRELKANATLKVP 857 (1326)
Q Consensus 794 ~piV~IlGhvdaGKTTLLd~L~~~~v----------------~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~ 857 (1326)
..+|+|+||+|||||||+++|++... .....+|+|.+++...+.+. ..
T Consensus 12 ~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~----------------~~ 75 (394)
T PRK12736 12 HVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETE----------------KR 75 (394)
T ss_pred eeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCC----------------Cc
Confidence 34599999999999999999985321 11125677777765544332 23
Q ss_pred CEEEEeCCCCcchhhhhhhccCccceeEEeeccccCCchhHHHHHHHHHhcCCc-EEEEEeccccccCcccCCCchHHHH
Q 000728 858 GLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTE-FIVALNKVDRLYGWKTCRNAPIVKA 936 (1326)
Q Consensus 858 ~I~IIDTPGhe~F~~lr~rg~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~vP-~IVvINKiD~~~~w~~~~~a~~~~~ 936 (1326)
.|+|||||||..|...+.+++..+|++|||||+.+|+++||.++|.++...++| +|||+||||++. ...+
T Consensus 76 ~i~~iDtPGh~~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~g~~~~IvviNK~D~~~------~~~~--- 146 (394)
T PRK12736 76 HYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYLVVFLNKVDLVD------DEEL--- 146 (394)
T ss_pred EEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCEEEEEEEecCCcc------hHHH---
Confidence 589999999999999999999999999999999999999999999999999999 678999999862 0111
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCC--------ChhhHHHHHHHHHHHhHh
Q 000728 937 IKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGE--------GIPDLLLLLVQWTQKTMV 1008 (1326)
Q Consensus 937 L~~q~~~~~~e~~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGe--------GI~eLl~~L~~~~q~~l~ 1008 (1326)
+......+...|...++. +..+++||+||++|. +++.|++.|..+++.+
T Consensus 147 -----------~~~i~~~i~~~l~~~~~~----------~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp~~-- 203 (394)
T PRK12736 147 -----------LELVEMEVRELLSEYDFP----------GDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIPTP-- 203 (394)
T ss_pred -----------HHHHHHHHHHHHHHhCCC----------cCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCCCC--
Confidence 111112444555555543 135799999999993 4666666665544321
Q ss_pred hhhhcccccceeEEEEEEEeCceeEEEEEEEeeEecCCCEEEEccCCCceeeeeeeccCCCCCceeeecceeeccccccc
Q 000728 1009 EKLTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKA 1088 (1326)
Q Consensus 1009 e~l~~~~~~~~~VlEvk~~~G~Gtvi~giV~~G~Lr~GD~IVl~g~~g~~~~~IR~Ll~p~p~~e~rVk~~~~~~k~v~a 1088 (1326)
.-....||++.|..+|.++|.|++++|+|.+|+|++||.|+++|... ...++|+++++|+..+..
T Consensus 204 -~~~~~~p~r~~I~~~~~~~g~G~Vv~G~v~~G~l~~gd~v~i~p~~~--------------~~~~~V~sI~~~~~~~~~ 268 (394)
T PRK12736 204 -ERDTDKPFLMPVEDVFTITGRGTVVTGRVERGTVKVGDEVEIVGIKE--------------TQKTVVTGVEMFRKLLDE 268 (394)
T ss_pred -CCCCCCCeEEEEEEEEecCCcEEEEEEEEeecEEecCCEEEEecCCC--------------CeEEEEEEEEECCEEccE
Confidence 11234689999999999999999999999999999999998876421 123567777777776665
Q ss_pred cc---ceeeeccccccccCCCceEEcCC
Q 000728 1089 AQ---GIKITAQGLEHAIAGTGLYVVGP 1113 (1326)
Q Consensus 1089 a~---gv~i~~~gl~~~~aG~~~~v~~~ 1113 (1326)
+. .+.|.+.|++......+++++.+
T Consensus 269 a~aGd~v~l~l~~i~~~~i~~G~vl~~~ 296 (394)
T PRK12736 269 GQAGDNVGVLLRGVDRDEVERGQVLAKP 296 (394)
T ss_pred ECCCCEEEEEECCCcHHhCCcceEEecC
Confidence 43 35666677765455556666554
No 16
>PLN03127 Elongation factor Tu; Provisional
Probab=99.97 E-value=2.3e-29 Score=302.72 Aligned_cols=260 Identities=24% Similarity=0.349 Sum_probs=187.5
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCcc----------------cccccCceeeeeeeeEeccccchhhhhhhccccccCC
Q 000728 793 RSPICCIMGHVDTGKTKLLDCIRGTNV----------------QEGEAGGITQQIGATYFPAENIRERTRELKANATLKV 856 (1326)
Q Consensus 793 R~piV~IlGhvdaGKTTLLd~L~~~~v----------------~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~ 856 (1326)
...+|+|+||+|||||||+++|++... .....+|||++++...+.+..
T Consensus 60 ~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~---------------- 123 (447)
T PLN03127 60 PHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAK---------------- 123 (447)
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCC----------------
Confidence 445699999999999999999973210 122347888887766655432
Q ss_pred CCEEEEeCCCCcchhhhhhhccCccceeEEeeccccCCchhHHHHHHHHHhcCCc-EEEEEeccccccCcccCCCchHHH
Q 000728 857 PGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTE-FIVALNKVDRLYGWKTCRNAPIVK 935 (1326)
Q Consensus 857 ~~I~IIDTPGhe~F~~lr~rg~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~vP-~IVvINKiD~~~~w~~~~~a~~~~ 935 (1326)
..|+|||||||.+|...+.+++..+|++|||||+..|+++||.+++.++...++| +|||+||||++.. ..+..
T Consensus 124 ~~i~~iDtPGh~~f~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~gip~iIvviNKiDlv~~------~~~~~ 197 (447)
T PLN03127 124 RHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVVFLNKVDVVDD------EELLE 197 (447)
T ss_pred eEEEEEECCCccchHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEeeccCCH------HHHHH
Confidence 3599999999999999998899999999999999999999999999999999999 5789999998620 11110
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCc---CCCC-------hhhHHHHHHHHHHH
Q 000728 936 AIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAI---SGEG-------IPDLLLLLVQWTQK 1005 (1326)
Q Consensus 936 ~L~~q~~~~~~e~~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~---tGeG-------I~eLl~~L~~~~q~ 1005 (1326)
.+ ...+...|...++. +..+|+||+||+ +|.| ++.|++.|..+++.
T Consensus 198 ~i--------------~~~i~~~l~~~~~~----------~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp~ 253 (447)
T PLN03127 198 LV--------------EMELRELLSFYKFP----------GDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIPE 253 (447)
T ss_pred HH--------------HHHHHHHHHHhCCC----------CCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCCC
Confidence 00 11233334333432 235899999987 4555 56777776655432
Q ss_pred hHhhhhhcccccceeEEEEEEEeCceeEEEEEEEeeEecCCCEEEEccCCCceeeeeeeccCCCCCceeeecceeecccc
Q 000728 1006 TMVEKLTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQ 1085 (1326)
Q Consensus 1006 ~l~e~l~~~~~~~~~VlEvk~~~G~Gtvi~giV~~G~Lr~GD~IVl~g~~g~~~~~IR~Ll~p~p~~e~rVk~~~~~~k~ 1085 (1326)
+. -....+|+++|.++|.+.|.|++++|+|.+|+|++||.|+++|.. |......+|+++++|+..
T Consensus 254 p~---r~~~~pfr~~I~~vf~v~g~GtVvtG~v~~G~i~~Gd~v~i~p~~------------~~g~~~~~VksI~~~~~~ 318 (447)
T PLN03127 254 PV---RVLDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGEEVEIVGLR------------PGGPLKTTVTGVEMFKKI 318 (447)
T ss_pred CC---cccccceEeeEEEEEEcCCceEEEEEEEEccEEecCCEEEEcccC------------CCCcEEEEEEEEEEECcE
Confidence 21 123457999999999999999999999999999999999887643 111224567777888776
Q ss_pred ccccc---ceeeeccccccccCCCceEEcCC
Q 000728 1086 IKAAQ---GIKITAQGLEHAIAGTGLYVVGP 1113 (1326)
Q Consensus 1086 v~aa~---gv~i~~~gl~~~~aG~~~~v~~~ 1113 (1326)
+..|. .+.|.+.|++......+++++.+
T Consensus 319 v~~a~aGd~v~l~L~~i~~~~i~rG~Vl~~~ 349 (447)
T PLN03127 319 LDQGQAGDNVGLLLRGLKREDVQRGQVICKP 349 (447)
T ss_pred eCEEcCCCEEEEEeCCCCHHHCCCccEEecC
Confidence 66553 36777777766555566666654
No 17
>PRK12735 elongation factor Tu; Reviewed
Probab=99.97 E-value=4.6e-29 Score=297.17 Aligned_cols=257 Identities=23% Similarity=0.346 Sum_probs=186.5
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCcc----------------cccccCceeeeeeeeEeccccchhhhhhhccccccCCC
Q 000728 794 SPICCIMGHVDTGKTKLLDCIRGTNV----------------QEGEAGGITQQIGATYFPAENIRERTRELKANATLKVP 857 (1326)
Q Consensus 794 ~piV~IlGhvdaGKTTLLd~L~~~~v----------------~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~ 857 (1326)
..+|+|+||+|||||||+++|++... .....+|||.+++...+.+. ..
T Consensus 12 ~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~----------------~~ 75 (396)
T PRK12735 12 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETA----------------NR 75 (396)
T ss_pred eEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCC----------------Cc
Confidence 34599999999999999999986211 11225677777765544332 23
Q ss_pred CEEEEeCCCCcchhhhhhhccCccceeEEeeccccCCchhHHHHHHHHHhcCCcEE-EEEeccccccCcccCCCchHHHH
Q 000728 858 GLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFI-VALNKVDRLYGWKTCRNAPIVKA 936 (1326)
Q Consensus 858 ~I~IIDTPGhe~F~~lr~rg~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~vP~I-VvINKiD~~~~w~~~~~a~~~~~ 936 (1326)
.|+|||||||.+|...+.+++..+|++|||||+..|+++||.++|.++...++|.| ||+||||++. ...+
T Consensus 76 ~i~~iDtPGh~~f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~gi~~iivvvNK~Dl~~------~~~~--- 146 (396)
T PRK12735 76 HYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVD------DEEL--- 146 (396)
T ss_pred EEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEecCCcc------hHHH---
Confidence 59999999999999999999999999999999999999999999999999999966 5899999862 1111
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCC----------ChhhHHHHHHHHHHHh
Q 000728 937 IKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGE----------GIPDLLLLLVQWTQKT 1006 (1326)
Q Consensus 937 L~~q~~~~~~e~~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGe----------GI~eLl~~L~~~~q~~ 1006 (1326)
+......+...|..+++. +..+++||+||++|. |++.|++.|..+++.+
T Consensus 147 -----------~~~~~~ei~~~l~~~~~~----------~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~~p 205 (396)
T PRK12735 147 -----------LELVEMEVRELLSKYDFP----------GDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIPEP 205 (396)
T ss_pred -----------HHHHHHHHHHHHHHcCCC----------cCceeEEecchhccccCCCCCcccccHHHHHHHHHhcCCCC
Confidence 111112344445555432 235799999999995 5667777666544321
Q ss_pred HhhhhhcccccceeEEEEEEEeCceeEEEEEEEeeEecCCCEEEEccCCCceeeeeeeccCCCCCceeeecceeeccccc
Q 000728 1007 MVEKLTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQI 1086 (1326)
Q Consensus 1007 l~e~l~~~~~~~~~VlEvk~~~G~Gtvi~giV~~G~Lr~GD~IVl~g~~g~~~~~IR~Ll~p~p~~e~rVk~~~~~~k~v 1086 (1326)
.-....+|++.|.++|.+.|.|++++|+|.+|+|++||.|++++... ...++|+++++|+..+
T Consensus 206 ---~~~~~~p~r~~I~~~f~v~g~Gtvv~G~v~~G~i~~gd~v~i~p~~~--------------~~~~~VksI~~~~~~v 268 (396)
T PRK12735 206 ---ERAIDKPFLMPIEDVFSISGRGTVVTGRVERGIVKVGDEVEIVGIKE--------------TQKTTVTGVEMFRKLL 268 (396)
T ss_pred ---CccCCCCeEEEEEEEEecCCceEEEEEEEEecEEeCCCEEEEecCCC--------------CeEEEEEEEEECCeEe
Confidence 11234579999999999999999999999999999999998875421 2345677777777766
Q ss_pred ccc---cceeeeccccccccCCCceEEcCC
Q 000728 1087 KAA---QGIKITAQGLEHAIAGTGLYVVGP 1113 (1326)
Q Consensus 1087 ~aa---~gv~i~~~gl~~~~aG~~~~v~~~ 1113 (1326)
..| ..+.|.++|++......+++++.+
T Consensus 269 ~~a~aGd~v~l~L~~i~~~~i~rG~vl~~~ 298 (396)
T PRK12735 269 DEGQAGDNVGVLLRGTKREDVERGQVLAKP 298 (396)
T ss_pred CEECCCCEEEEEeCCCcHHHCCcceEEEcC
Confidence 654 336666677765555556666554
No 18
>PLN03126 Elongation factor Tu; Provisional
Probab=99.97 E-value=3.3e-29 Score=302.92 Aligned_cols=258 Identities=24% Similarity=0.326 Sum_probs=187.1
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCc----------------ccccccCceeeeeeeeEeccccchhhhhhhccccccCCC
Q 000728 794 SPICCIMGHVDTGKTKLLDCIRGTN----------------VQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVP 857 (1326)
Q Consensus 794 ~piV~IlGhvdaGKTTLLd~L~~~~----------------v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~ 857 (1326)
..+|+|+||+|||||||+++|++.. ......+|||.+++..++.+. ..
T Consensus 81 ~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~----------------~~ 144 (478)
T PLN03126 81 HVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETE----------------NR 144 (478)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecC----------------Cc
Confidence 3459999999999999999998521 112335778888776666543 23
Q ss_pred CEEEEeCCCCcchhhhhhhccCccceeEEeeccccCCchhHHHHHHHHHhcCCc-EEEEEeccccccCcccCCCchHHHH
Q 000728 858 GLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTE-FIVALNKVDRLYGWKTCRNAPIVKA 936 (1326)
Q Consensus 858 ~I~IIDTPGhe~F~~lr~rg~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~vP-~IVvINKiD~~~~w~~~~~a~~~~~ 936 (1326)
.|+|||||||.+|...+.+++..+|++|||||+..|+++||.++|.++...++| +|||+||||++. ...+
T Consensus 145 ~i~liDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~gi~~iIvvvNK~Dl~~------~~~~--- 215 (478)
T PLN03126 145 HYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVD------DEEL--- 215 (478)
T ss_pred EEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEecccccC------HHHH---
Confidence 599999999999999999999999999999999999999999999999999999 788999999862 0111
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCCh------------------hhHHHH
Q 000728 937 IKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGI------------------PDLLLL 998 (1326)
Q Consensus 937 L~~q~~~~~~e~~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI------------------~eLl~~ 998 (1326)
+......+...|...||. ...+++||+||++|.++ +.|++.
T Consensus 216 -----------~~~i~~~i~~~l~~~g~~----------~~~~~~vp~Sa~~g~n~~~~~~~~~~g~~~wy~~i~~Ll~~ 274 (478)
T PLN03126 216 -----------LELVELEVRELLSSYEFP----------GDDIPIISGSALLALEALMENPNIKRGDNKWVDKIYELMDA 274 (478)
T ss_pred -----------HHHHHHHHHHHHHhcCCC----------cCcceEEEEEccccccccccccccccCCCchhhhHHHHHHH
Confidence 111123455566666653 13589999999998643 223333
Q ss_pred HHHHHHHhHhhhhhcccccceeEEEEEEEeCceeEEEEEEEeeEecCCCEEEEccCCCceeeeeeeccCCCCCceeeecc
Q 000728 999 LVQWTQKTMVEKLTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKG 1078 (1326)
Q Consensus 999 L~~~~q~~l~e~l~~~~~~~~~VlEvk~~~G~Gtvi~giV~~G~Lr~GD~IVl~g~~g~~~~~IR~Ll~p~p~~e~rVk~ 1078 (1326)
|..+.+ . ..-....|+++.|.++|.+.|.|+++.|.|.+|+|++||.|++++.... ..++|++
T Consensus 275 l~~~~~--~-p~r~~~~p~r~~I~~vf~v~g~GtVv~G~V~sG~i~~Gd~v~i~p~~~~--------------~~~~Vks 337 (478)
T PLN03126 275 VDSYIP--I-PQRQTDLPFLLAVEDVFSITGRGTVATGRVERGTVKVGETVDIVGLRET--------------RSTTVTG 337 (478)
T ss_pred HHHhCC--C-CCCccccceeeEEEEEEEeCCceEEEEEEEEcCeEecCCEEEEecCCCc--------------eEEEEEE
Confidence 322110 0 0012346799999999999999999999999999999999988654211 2345667
Q ss_pred eeecccccccc---cceeeeccccccccCCCceEEcCCc
Q 000728 1079 TYLHHKQIKAA---QGIKITAQGLEHAIAGTGLYVVGPD 1114 (1326)
Q Consensus 1079 ~~~~~k~v~aa---~gv~i~~~gl~~~~aG~~~~v~~~~ 1114 (1326)
+++|+..+..| ..+.|.+.|++......+++++.++
T Consensus 338 I~~~~~~v~~A~aG~~v~l~L~~i~~~di~rG~VL~~~~ 376 (478)
T PLN03126 338 VEMFQKILDEALAGDNVGLLLRGIQKADIQRGMVLAKPG 376 (478)
T ss_pred EEECCeECCEEeCCceeeeeccCCcHHHcCCccEEecCC
Confidence 77776665544 3467777777665566667666553
No 19
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.97 E-value=2.6e-29 Score=302.22 Aligned_cols=260 Identities=25% Similarity=0.380 Sum_probs=188.0
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCc--ccc-----------------------------cccCceeeeeeeeEeccccch
Q 000728 794 SPICCIMGHVDTGKTKLLDCIRGTN--VQE-----------------------------GEAGGITQQIGATYFPAENIR 842 (1326)
Q Consensus 794 ~piV~IlGhvdaGKTTLLd~L~~~~--v~~-----------------------------ge~gGITq~iga~~~~~~~~~ 842 (1326)
..+|+|+||+|||||||+++|++.. +.. ...+|+|.+++..++.+.
T Consensus 6 ~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~--- 82 (425)
T PRK12317 6 HLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETD--- 82 (425)
T ss_pred EEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecC---
Confidence 4569999999999999999998432 110 113566666665555433
Q ss_pred hhhhhhccccccCCCCEEEEeCCCCcchhhhhhhccCccceeEEeecccc--CCchhHHHHHHHHHhcCC-cEEEEEecc
Q 000728 843 ERTRELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMH--GLEPQTIESLNLLKMRNT-EFIVALNKV 919 (1326)
Q Consensus 843 ~~~~~v~~~~~~~~~~I~IIDTPGhe~F~~lr~rg~~~aDiaILVVDa~~--Gv~~QT~E~l~~l~~~~v-P~IVvINKi 919 (1326)
...|+|||||||..|...+.++++.+|++|||||+.+ ++.++|.+++.++...++ |+|||+||+
T Consensus 83 -------------~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~~~iivviNK~ 149 (425)
T PRK12317 83 -------------KYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLGINQLIVAINKM 149 (425)
T ss_pred -------------CeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcCCCeEEEEEEcc
Confidence 3469999999999999888888999999999999999 999999999999988886 599999999
Q ss_pred ccccCcccCCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHH
Q 000728 920 DRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLL 999 (1326)
Q Consensus 920 D~~~~w~~~~~a~~~~~L~~q~~~~~~e~~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L 999 (1326)
|+.. |.. ..|......+...+...|+.. ..+++|||||++|.||.++...+
T Consensus 150 Dl~~-~~~------------------~~~~~~~~~i~~~l~~~g~~~----------~~~~ii~iSA~~g~gi~~~~~~~ 200 (425)
T PRK12317 150 DAVN-YDE------------------KRYEEVKEEVSKLLKMVGYKP----------DDIPFIPVSAFEGDNVVKKSENM 200 (425)
T ss_pred cccc-ccH------------------HHHHHHHHHHHHHHHhhCCCc----------CcceEEEeecccCCCccccccCC
Confidence 9862 210 111222333444455555431 24689999999999999876654
Q ss_pred HHHHHHhHhhhhh--------cccccceeEEEEEEEeCceeEEEEEEEeeEecCCCEEEEccCCCceeeeeeeccCCCCC
Q 000728 1000 VQWTQKTMVEKLT--------FRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPM 1071 (1326)
Q Consensus 1000 ~~~~q~~l~e~l~--------~~~~~~~~VlEvk~~~G~Gtvi~giV~~G~Lr~GD~IVl~g~~g~~~~~IR~Ll~p~p~ 1071 (1326)
.||....+++.|. ...|++++|.++|.+.|.|++++|.|.+|+|++||.|++++.+ .
T Consensus 201 ~wy~g~~L~~~l~~~~~~~~~~~~p~r~~i~~~~~~~g~G~vv~G~v~~G~v~~Gd~v~i~P~~--~------------- 265 (425)
T PRK12317 201 PWYNGPTLLEALDNLKPPEKPTDKPLRIPIQDVYSISGVGTVPVGRVETGVLKVGDKVVFMPAG--V------------- 265 (425)
T ss_pred CcccHHHHHHHHhcCCCCccccCCCcEEEEEEEEeeCCCeEEEEEEEeeccEecCCEEEECCCC--C-------------
Confidence 4443334443332 2357899999999999999999999999999999999987643 1
Q ss_pred ceeeecceeecccccccc---cceeeeccccccccCCCceEEcCCc
Q 000728 1072 KELRVKGTYLHHKQIKAA---QGIKITAQGLEHAIAGTGLYVVGPD 1114 (1326)
Q Consensus 1072 ~e~rVk~~~~~~k~v~aa---~gv~i~~~gl~~~~aG~~~~v~~~~ 1114 (1326)
..+|+++++|+..+..| ..+.|.+.|++....-.+.+++.+.
T Consensus 266 -~~~VksI~~~~~~~~~a~aG~~v~i~l~~~~~~~i~rG~vl~~~~ 310 (425)
T PRK12317 266 -VGEVKSIEMHHEELPQAEPGDNIGFNVRGVGKKDIKRGDVCGHPD 310 (425)
T ss_pred -eEEEEEEEECCcccCEECCCCeEEEEECCCCHHHccCccEecCCC
Confidence 24566667776665544 3467777777654455566665543
No 20
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=7.7e-30 Score=296.70 Aligned_cols=224 Identities=27% Similarity=0.345 Sum_probs=177.2
Q ss_pred cCCCCCEEEEEeCCCCCHHHHHHHHHcCc---------------ccccccCceeeeeeeeEeccccchhhhhhhcccccc
Q 000728 790 ENLRSPICCIMGHVDTGKTKLLDCIRGTN---------------VQEGEAGGITQQIGATYFPAENIRERTRELKANATL 854 (1326)
Q Consensus 790 ~~~R~piV~IlGhvdaGKTTLLd~L~~~~---------------v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~ 854 (1326)
+++|| ++|+.|+|||||||.++|+... .+....+|||....++.+.|.. -
T Consensus 58 ~~iRN--fsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~-------------~ 122 (650)
T KOG0462|consen 58 ENIRN--FSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKD-------------G 122 (650)
T ss_pred hhccc--eEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEc-------------C
Confidence 67999 9999999999999999998421 1223457888766555444432 0
Q ss_pred CCCCEEEEeCCCCcchhhhhhhccCccceeEEeeccccCCchhHHHHHHHHHhcCCcEEEEEeccccccCcccCCCchHH
Q 000728 855 KVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIV 934 (1326)
Q Consensus 855 ~~~~I~IIDTPGhe~F~~lr~rg~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~vP~IVvINKiD~~~~w~~~~~a~~~ 934 (1326)
..+-+++||||||.+|+..++|.+..||+|||||||.+|+++||.-.+.++...++.+|.||||||++ .++..
T Consensus 123 ~~ylLNLIDTPGHvDFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~~L~iIpVlNKIDlp-------~adpe 195 (650)
T KOG0462|consen 123 QSYLLNLIDTPGHVDFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEAGLAIIPVLNKIDLP-------SADPE 195 (650)
T ss_pred CceEEEeecCCCcccccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHcCCeEEEeeeccCCC-------CCCHH
Confidence 12459999999999999999999999999999999999999999999999999999999999999996 34332
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHH-cCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHHHHHhHhhhhhc
Q 000728 935 KAIKQQNTDVQNEFNMRLVQIVTQLKE-QGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTF 1013 (1326)
Q Consensus 935 ~~L~~q~~~~~~e~~~~l~~I~~~L~e-~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~q~~l~e~l~~ 1013 (1326)
++..++.+ .++. .-+++.+||++|.|+..||+.|++.++.+. ...
T Consensus 196 -------------------~V~~q~~~lF~~~------------~~~~i~vSAK~G~~v~~lL~AII~rVPpP~---~~~ 241 (650)
T KOG0462|consen 196 -------------------RVENQLFELFDIP------------PAEVIYVSAKTGLNVEELLEAIIRRVPPPK---GIR 241 (650)
T ss_pred -------------------HHHHHHHHHhcCC------------ccceEEEEeccCccHHHHHHHHHhhCCCCC---CCC
Confidence 22222211 1222 238999999999999999999998887653 345
Q ss_pred ccccceeEEEEEEEeCceeEEEEEEEeeEecCCCEEEEccCCCceeeeeeeccCCC
Q 000728 1014 RNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPH 1069 (1326)
Q Consensus 1014 ~~~~~~~VlEvk~~~G~Gtvi~giV~~G~Lr~GD~IVl~g~~g~~~~~IR~Ll~p~ 1069 (1326)
..||+|.|+.+++..-+|.++.+.|..|.|+.||.|..|.+.......+-.++.|.
T Consensus 242 d~plr~Lifds~yD~y~G~I~~vrv~~G~vrkGdkV~~~~t~~~yev~~vgvm~p~ 297 (650)
T KOG0462|consen 242 DAPLRMLIFDSEYDEYRGVIALVRVVDGVVRKGDKVQSAATGKSYEVKVVGVMRPE 297 (650)
T ss_pred CcchHHHhhhhhhhhhcceEEEEEEeeeeeecCCEEEEeecCcceEeEEeEEeccC
Confidence 77899999999999999999999999999999999988876544334444555554
No 21
>CHL00071 tufA elongation factor Tu
Probab=99.96 E-value=6.6e-29 Score=297.04 Aligned_cols=257 Identities=25% Similarity=0.329 Sum_probs=183.3
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCcc----------------cccccCceeeeeeeeEeccccchhhhhhhccccccCCC
Q 000728 794 SPICCIMGHVDTGKTKLLDCIRGTNV----------------QEGEAGGITQQIGATYFPAENIRERTRELKANATLKVP 857 (1326)
Q Consensus 794 ~piV~IlGhvdaGKTTLLd~L~~~~v----------------~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~ 857 (1326)
..+|+|+||+|||||||+++|++... .....+|+|.++...++.+. ..
T Consensus 12 ~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~----------------~~ 75 (409)
T CHL00071 12 HVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETE----------------NR 75 (409)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccC----------------Ce
Confidence 34599999999999999999986421 11223677777766555432 24
Q ss_pred CEEEEeCCCCcchhhhhhhccCccceeEEeeccccCCchhHHHHHHHHHhcCCc-EEEEEeccccccCcccCCCchHHHH
Q 000728 858 GLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTE-FIVALNKVDRLYGWKTCRNAPIVKA 936 (1326)
Q Consensus 858 ~I~IIDTPGhe~F~~lr~rg~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~vP-~IVvINKiD~~~~w~~~~~a~~~~~ 936 (1326)
.|+|||||||..|...+.+++..+|++|||||+..|+++||.++|.++...++| +|||+||||++.. ..+
T Consensus 76 ~~~~iDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~g~~~iIvvvNK~D~~~~------~~~--- 146 (409)
T CHL00071 76 HYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVGVPNIVVFLNKEDQVDD------EEL--- 146 (409)
T ss_pred EEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEccCCCCH------HHH---
Confidence 589999999999999999999999999999999999999999999999999999 7789999999620 111
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCCh------------------hhHHHH
Q 000728 937 IKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGI------------------PDLLLL 998 (1326)
Q Consensus 937 L~~q~~~~~~e~~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI------------------~eLl~~ 998 (1326)
+......+...|...+++. ..++|+|+||++|.|+ +.|++.
T Consensus 147 -----------~~~~~~~l~~~l~~~~~~~----------~~~~ii~~Sa~~g~n~~~~~~~~~~~~~~w~~~~~~ll~~ 205 (409)
T CHL00071 147 -----------LELVELEVRELLSKYDFPG----------DDIPIVSGSALLALEALTENPKIKRGENKWVDKIYNLMDA 205 (409)
T ss_pred -----------HHHHHHHHHHHHHHhCCCC----------CcceEEEcchhhcccccccCccccccCCchhhhHHHHHHH
Confidence 1111234455566555431 3479999999999854 333333
Q ss_pred HHHHHHHhHhhhhhcccccceeEEEEEEEeCceeEEEEEEEeeEecCCCEEEEccCCCceeeeeeeccCCCCCceeeecc
Q 000728 999 LVQWTQKTMVEKLTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKG 1078 (1326)
Q Consensus 999 L~~~~q~~l~e~l~~~~~~~~~VlEvk~~~G~Gtvi~giV~~G~Lr~GD~IVl~g~~g~~~~~IR~Ll~p~p~~e~rVk~ 1078 (1326)
|..+++.+ .-....||++.|..+|.++|.|++++|+|.+|+|++||.|+++|.... ..++|++
T Consensus 206 l~~~~~~p---~~~~~~p~r~~I~~v~~~~g~G~Vv~G~V~sG~l~~Gd~v~i~p~~~~--------------~~~~Vks 268 (409)
T CHL00071 206 VDSYIPTP---ERDTDKPFLMAIEDVFSITGRGTVATGRIERGTVKVGDTVEIVGLRET--------------KTTTVTG 268 (409)
T ss_pred HHhhCCCC---CCCCCCCEEEEEEEEEEeCCCeEEEEEEEecCEEeeCCEEEEeeCCCC--------------cEEEEEE
Confidence 33222110 112245799999999999999999999999999999999987653211 2356677
Q ss_pred eeecccccccc---cceeeeccccccccCCCceEEcCC
Q 000728 1079 TYLHHKQIKAA---QGIKITAQGLEHAIAGTGLYVVGP 1113 (1326)
Q Consensus 1079 ~~~~~k~v~aa---~gv~i~~~gl~~~~aG~~~~v~~~ 1113 (1326)
+++|+..+..| ..+.|.+.|++......+.+++.+
T Consensus 269 I~~~~~~v~~a~aGd~v~i~l~~i~~~~i~~G~vl~~~ 306 (409)
T CHL00071 269 LEMFQKTLDEGLAGDNVGILLRGIQKEDIERGMVLAKP 306 (409)
T ss_pred EEEcCcCCCEECCCceeEEEEcCCCHHHcCCeEEEecC
Confidence 77777665544 235666667665445556655544
No 22
>PRK00049 elongation factor Tu; Reviewed
Probab=99.96 E-value=8.9e-29 Score=294.66 Aligned_cols=257 Identities=24% Similarity=0.348 Sum_probs=186.7
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCcc----------------cccccCceeeeeeeeEeccccchhhhhhhccccccCCC
Q 000728 794 SPICCIMGHVDTGKTKLLDCIRGTNV----------------QEGEAGGITQQIGATYFPAENIRERTRELKANATLKVP 857 (1326)
Q Consensus 794 ~piV~IlGhvdaGKTTLLd~L~~~~v----------------~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~ 857 (1326)
..+|+|+||+|||||||+++|++... .....+|+|.+++...+.+. ..
T Consensus 12 ~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~----------------~~ 75 (396)
T PRK00049 12 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETE----------------KR 75 (396)
T ss_pred EEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCC----------------Ce
Confidence 34599999999999999999986311 11225778877765544332 23
Q ss_pred CEEEEeCCCCcchhhhhhhccCccceeEEeeccccCCchhHHHHHHHHHhcCCcEE-EEEeccccccCcccCCCchHHHH
Q 000728 858 GLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFI-VALNKVDRLYGWKTCRNAPIVKA 936 (1326)
Q Consensus 858 ~I~IIDTPGhe~F~~lr~rg~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~vP~I-VvINKiD~~~~w~~~~~a~~~~~ 936 (1326)
.|+|||||||.+|...+.+++..+|++|||||+..|+++||.++|.++...++|+| ||+||||+.. ...
T Consensus 76 ~i~~iDtPG~~~f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~g~p~iiVvvNK~D~~~------~~~---- 145 (396)
T PRK00049 76 HYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVD------DEE---- 145 (396)
T ss_pred EEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHcCCCEEEEEEeecCCcc------hHH----
Confidence 59999999999999999999999999999999999999999999999999999976 6899999862 000
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCC----------ChhhHHHHHHHHHHHh
Q 000728 937 IKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGE----------GIPDLLLLLVQWTQKT 1006 (1326)
Q Consensus 937 L~~q~~~~~~e~~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGe----------GI~eLl~~L~~~~q~~ 1006 (1326)
.+......+...|...|+. +..++++|+||++|. |++.|++.|..+++.+
T Consensus 146 ----------~~~~~~~~i~~~l~~~~~~----------~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~~~p 205 (396)
T PRK00049 146 ----------LLELVEMEVRELLSKYDFP----------GDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYIPTP 205 (396)
T ss_pred ----------HHHHHHHHHHHHHHhcCCC----------ccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcCCCC
Confidence 0111122344555555542 235799999999986 4556666665443211
Q ss_pred HhhhhhcccccceeEEEEEEEeCceeEEEEEEEeeEecCCCEEEEccCCCceeeeeeeccCCCCCceeeecceeeccccc
Q 000728 1007 MVEKLTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQI 1086 (1326)
Q Consensus 1007 l~e~l~~~~~~~~~VlEvk~~~G~Gtvi~giV~~G~Lr~GD~IVl~g~~g~~~~~IR~Ll~p~p~~e~rVk~~~~~~k~v 1086 (1326)
. -....||++.|.++|.+.|.|++++|.|.+|+|++||.|+++|... ....+|+++++|+..+
T Consensus 206 --~-~~~~~p~r~~I~~~f~v~g~G~Vv~G~v~~G~i~~gd~v~i~p~~~--------------~~~~~VksI~~~~~~~ 268 (396)
T PRK00049 206 --E-RAIDKPFLMPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIRD--------------TQKTTVTGVEMFRKLL 268 (396)
T ss_pred --C-CCCCCCeEEEEEEEEeeCCceEEEEEEEeeeEEecCCEEEEeecCC--------------CceEEEEEEEECCcEe
Confidence 1 1234689999999999999999999999999999999998876421 2345677778877766
Q ss_pred cccc---ceeeeccccccccCCCceEEcCC
Q 000728 1087 KAAQ---GIKITAQGLEHAIAGTGLYVVGP 1113 (1326)
Q Consensus 1087 ~aa~---gv~i~~~gl~~~~aG~~~~v~~~ 1113 (1326)
..|. .+.|.++|++....-.+++++.+
T Consensus 269 ~~a~~Gd~v~l~l~~i~~~~i~~G~vl~~~ 298 (396)
T PRK00049 269 DEGQAGDNVGALLRGIKREDVERGQVLAKP 298 (396)
T ss_pred CEEcCCCEEEEEeCCCCHHHCCcceEEecC
Confidence 6543 35666677655445556665554
No 23
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.96 E-value=9e-29 Score=294.69 Aligned_cols=261 Identities=23% Similarity=0.342 Sum_probs=180.9
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCcc----------------cccccCceeeeeeeeEeccccchhhhhhhccccccCC
Q 000728 793 RSPICCIMGHVDTGKTKLLDCIRGTNV----------------QEGEAGGITQQIGATYFPAENIRERTRELKANATLKV 856 (1326)
Q Consensus 793 R~piV~IlGhvdaGKTTLLd~L~~~~v----------------~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~ 856 (1326)
+..+|+|+||+|||||||+++|++... .....+|+|.++....+.+. .
T Consensus 11 ~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~----------------~ 74 (394)
T TIGR00485 11 PHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETE----------------N 74 (394)
T ss_pred ceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCC----------------C
Confidence 445699999999999999999974311 11224778877655544332 2
Q ss_pred CCEEEEeCCCCcchhhhhhhccCccceeEEeeccccCCchhHHHHHHHHHhcCCcEE-EEEeccccccCcccCCCchHHH
Q 000728 857 PGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFI-VALNKVDRLYGWKTCRNAPIVK 935 (1326)
Q Consensus 857 ~~I~IIDTPGhe~F~~lr~rg~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~vP~I-VvINKiD~~~~w~~~~~a~~~~ 935 (1326)
..++|||||||++|...+.+++..+|++|||||+.+|+.+||.++|.++...++|.| ||+||||++.. ..+
T Consensus 75 ~~~~liDtpGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~gi~~iIvvvNK~Dl~~~------~~~-- 146 (394)
T TIGR00485 75 RHYAHVDCPGHADYVKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQVGVPYIVVFLNKCDMVDD------EEL-- 146 (394)
T ss_pred EEEEEEECCchHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEecccCCH------HHH--
Confidence 359999999999999999999999999999999999999999999999999999966 68999998621 000
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCC-ChhhHHHHHHHHHHHhH---h-hh
Q 000728 936 AIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGE-GIPDLLLLLVQWTQKTM---V-EK 1010 (1326)
Q Consensus 936 ~L~~q~~~~~~e~~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGe-GI~eLl~~L~~~~q~~l---~-e~ 1010 (1326)
+......+...|..+++. +..+++|++||++|. |...|...+..++.... . ..
T Consensus 147 ------------~~~~~~~i~~~l~~~~~~----------~~~~~ii~vSa~~g~~g~~~~~~~~~~ll~~l~~~~~~~~ 204 (394)
T TIGR00485 147 ------------LELVEMEVRELLSEYDFP----------GDDTPIIRGSALKALEGDAEWEAKILELMDAVDEYIPTPE 204 (394)
T ss_pred ------------HHHHHHHHHHHHHhcCCC----------ccCccEEECccccccccCCchhHhHHHHHHHHHhcCCCCC
Confidence 111112344455555542 234799999999985 44444332222221110 0 01
Q ss_pred hhcccccceeEEEEEEEeCceeEEEEEEEeeEecCCCEEEEccCCCceeeeeeeccCCCCCceeeecceeeccccccccc
Q 000728 1011 LTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAAQ 1090 (1326)
Q Consensus 1011 l~~~~~~~~~VlEvk~~~G~Gtvi~giV~~G~Lr~GD~IVl~g~~g~~~~~IR~Ll~p~p~~e~rVk~~~~~~k~v~aa~ 1090 (1326)
-....+|++.|..+|.++|.|++++|+|.+|+|++||.|++++.. ....++|+++++|+..+..|.
T Consensus 205 ~~~~~p~r~~V~~vf~~~g~G~Vv~G~v~~G~l~~gd~v~i~p~~--------------~~~~~~VksI~~~~~~~~~a~ 270 (394)
T TIGR00485 205 RETDKPFLMPIEDVFSITGRGTVVTGRVERGIVKVGEEVEIVGLK--------------DTRKTTVTGVEMFRKELDEGR 270 (394)
T ss_pred CCCCCCeEEEEEEEEeeCCceEEEEEEEEeeEEeCCCEEEEecCC--------------CCcEEEEEEEEECCeEEEEEC
Confidence 123457999999999999999999999999999999999876531 123456777777776665443
Q ss_pred ---ceeeeccccccccCCCceEEcCC
Q 000728 1091 ---GIKITAQGLEHAIAGTGLYVVGP 1113 (1326)
Q Consensus 1091 ---gv~i~~~gl~~~~aG~~~~v~~~ 1113 (1326)
.+.|.+.|++......+.+++.+
T Consensus 271 aGd~v~l~l~~i~~~~i~rG~vl~~~ 296 (394)
T TIGR00485 271 AGDNVGLLLRGIKREEIERGMVLAKP 296 (394)
T ss_pred CCCEEEEEeCCccHHHCCccEEEecC
Confidence 25556666654444455555543
No 24
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.96 E-value=7.7e-29 Score=297.84 Aligned_cols=283 Identities=19% Similarity=0.230 Sum_probs=191.8
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCcc---cccccCceeeeeeeeEecccc---chhhhh--hhccc------------c
Q 000728 793 RSPICCIMGHVDTGKTKLLDCIRGTNV---QEGEAGGITQQIGATYFPAEN---IRERTR--ELKAN------------A 852 (1326)
Q Consensus 793 R~piV~IlGhvdaGKTTLLd~L~~~~v---~~ge~gGITq~iga~~~~~~~---~~~~~~--~v~~~------------~ 852 (1326)
.+.+|+++||+|||||||+.+|++.+. .....+|||+++|+.++.+.. ...... ..... .
T Consensus 33 ~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (460)
T PTZ00327 33 ATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGHK 112 (460)
T ss_pred CcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccccccc
Confidence 445699999999999999999997543 445578999999987653200 000000 00000 0
Q ss_pred ccCCCCEEEEeCCCCcchhhhhhhccCccceeEEeeccccC-CchhHHHHHHHHHhcCCc-EEEEEeccccccCcccCCC
Q 000728 853 TLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHG-LEPQTIESLNLLKMRNTE-FIVALNKVDRLYGWKTCRN 930 (1326)
Q Consensus 853 ~~~~~~I~IIDTPGhe~F~~lr~rg~~~aDiaILVVDa~~G-v~~QT~E~l~~l~~~~vP-~IVvINKiD~~~~w~~~~~ 930 (1326)
......|+|||||||+.|...+.+++..+|++|||||+.+| +++||.++|.++..+++| +|||+||||++.
T Consensus 113 ~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lgi~~iIVvlNKiDlv~------- 185 (460)
T PTZ00327 113 MTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMKLKHIIILQNKIDLVK------- 185 (460)
T ss_pred ccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcCCCcEEEEEecccccC-------
Confidence 01124699999999999999999999999999999999996 799999999999888875 889999999862
Q ss_pred chHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHHHHHhHhhh
Q 000728 931 APIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEK 1010 (1326)
Q Consensus 931 a~~~~~L~~q~~~~~~e~~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~q~~l~e~ 1010 (1326)
.. .+...+..+...|.... ...+++||+||++|.||+.|++.|...++.+ .
T Consensus 186 ~~--------------~~~~~~~ei~~~l~~~~------------~~~~~iipVSA~~G~nI~~Ll~~L~~~lp~~---~ 236 (460)
T PTZ00327 186 EA--------------QAQDQYEEIRNFVKGTI------------ADNAPIIPISAQLKYNIDVVLEYICTQIPIP---K 236 (460)
T ss_pred HH--------------HHHHHHHHHHHHHHhhc------------cCCCeEEEeeCCCCCCHHHHHHHHHhhCCCC---C
Confidence 11 01112223333332211 2357999999999999999999987655432 1
Q ss_pred hhcccccceeEEEEEEEeC--------ceeEEEEEEEeeEecCCCEEEEccCCCceeeeeeeccCCCCCceeeecceeec
Q 000728 1011 LTFRNELQCTVLEVKVIEG--------HGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLH 1082 (1326)
Q Consensus 1011 l~~~~~~~~~VlEvk~~~G--------~Gtvi~giV~~G~Lr~GD~IVl~g~~g~~~~~IR~Ll~p~p~~e~rVk~~~~~ 1082 (1326)
-....+++++|..+|.+.| +|++++|.|.+|+|++||.|.+.+.+-. ... ..=+.+.| ...+|+++++|
T Consensus 237 r~~~~p~r~~Idr~F~V~~~g~~~~~~~GtVv~G~v~~G~l~~Gd~v~i~P~~~~-~~~-~g~~~~~~-~~~~VksI~~~ 313 (460)
T PTZ00327 237 RDLTSPPRMIVIRSFDVNKPGEDIENLKGGVAGGSILQGVLKVGDEIEIRPGIIS-KDS-GGEFTCRP-IRTRIVSLFAE 313 (460)
T ss_pred CCCCCCcEEEEEEEEeecccCCcccCCceEEEEEEEeeceEecCCEEEEccCccc-ccc-cCcccccc-ceEEEEEEEEC
Confidence 1235678999999988865 7999999999999999999998764300 000 00000111 13578888888
Q ss_pred cccccccc-c--eeeecc---ccccccCCCceEEcCCc
Q 000728 1083 HKQIKAAQ-G--IKITAQ---GLEHAIAGTGLYVVGPD 1114 (1326)
Q Consensus 1083 ~k~v~aa~-g--v~i~~~---gl~~~~aG~~~~v~~~~ 1114 (1326)
+..+..|. | +.|.+. ++.......+++++.+.
T Consensus 314 ~~~v~~a~aG~~vai~l~ld~~v~~~dv~rG~Vl~~~~ 351 (460)
T PTZ00327 314 NNELQYAVPGGLIGVGTTIDPTLTRADRLVGQVLGYPG 351 (460)
T ss_pred CeECCEEcCCCEEEEEeccCCCcchhhcccccEEEcCC
Confidence 87776553 3 444433 44444444566666543
No 25
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=3.4e-29 Score=272.84 Aligned_cols=257 Identities=25% Similarity=0.362 Sum_probs=194.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHcC----------------cccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCE
Q 000728 796 ICCIMGHVDTGKTKLLDCIRGT----------------NVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGL 859 (1326)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~~----------------~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I 859 (1326)
+|+.|||+|||||||.-+|... +.....++|||+......+.+. ..++
T Consensus 14 NigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~----------------~rhy 77 (394)
T COG0050 14 NVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETA----------------NRHY 77 (394)
T ss_pred EEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecC----------------CceE
Confidence 5999999999999999998631 1233446778777655544433 2469
Q ss_pred EEEeCCCCcchhhhhhhccCccceeEEeeccccCCchhHHHHHHHHHhcCCc-EEEEEeccccccCcccCCCchHHHHHH
Q 000728 860 LVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTE-FIVALNKVDRLYGWKTCRNAPIVKAIK 938 (1326)
Q Consensus 860 ~IIDTPGhe~F~~lr~rg~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~vP-~IVvINKiD~~~~w~~~~~a~~~~~L~ 938 (1326)
-++|+|||.+|..++..|+.+.|++||||+|.+|.+|||++||.+++..++| +||++||+|++.+ .++...
T Consensus 78 ahVDcPGHaDYvKNMItgAaqmDgAILVVsA~dGpmPqTrEHiLlarqvGvp~ivvflnK~Dmvdd------~ellel-- 149 (394)
T COG0050 78 AHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYIVVFLNKVDMVDD------EELLEL-- 149 (394)
T ss_pred EeccCCChHHHHHHHhhhHHhcCccEEEEEcCCCCCCcchhhhhhhhhcCCcEEEEEEecccccCc------HHHHHH--
Confidence 9999999999999999999999999999999999999999999999999997 6789999999842 222222
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcC-CCCh-------hhHHHHHHHHHHHhHhhh
Q 000728 939 QQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAIS-GEGI-------PDLLLLLVQWTQKTMVEK 1010 (1326)
Q Consensus 939 ~q~~~~~~e~~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~t-GeGI-------~eLl~~L~~~~q~~l~e~ 1010 (1326)
--..++.+|..+||. |..+|++-.||+. .+|- .+|++.+-.|++.+-.
T Consensus 150 ------------VemEvreLLs~y~f~----------gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip~Per-- 205 (394)
T COG0050 150 ------------VEMEVRELLSEYGFP----------GDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIPTPER-- 205 (394)
T ss_pred ------------HHHHHHHHHHHcCCC----------CCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCCCCCC--
Confidence 123577888888875 5678999999874 3443 3444444333332211
Q ss_pred hhcccccceeEEEEEEEeCceeEEEEEEEeeEecCCCEEEEccCCCceeeeeeeccCCCCCceeeecceeecccccccc-
Q 000728 1011 LTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAA- 1089 (1326)
Q Consensus 1011 l~~~~~~~~~VlEvk~~~G~Gtvi~giV~~G~Lr~GD~IVl~g~~g~~~~~IR~Ll~p~p~~e~rVk~~~~~~k~v~aa- 1089 (1326)
....||.++|-.+|.+.|+|++++|+|.+|+|++|+.+.++|... .....+.|+.++.+.+..+
T Consensus 206 -~~dkPflmpvEdvfsIsgrgtvvtGrVeRG~lkvg~eveivG~~~--------------~~kttvtgvemfrk~ld~~~ 270 (394)
T COG0050 206 -DIDKPFLMPVEDVFSISGRGTVVTGRVERGILKVGEEVEIVGIKE--------------TQKTTVTGVEMFRKLLDEGQ 270 (394)
T ss_pred -cccccccccceeeEEEcCceeEEEEEEeeeeeccCCEEEEecccc--------------cceeEEEhHHHHHHHHhccc
Confidence 235679999999999999999999999999999999998887541 1233456777777665544
Q ss_pred --cceeeeccccccccCCCceEEcCCcc
Q 000728 1090 --QGIKITAQGLEHAIAGTGLYVVGPDD 1115 (1326)
Q Consensus 1090 --~gv~i~~~gl~~~~aG~~~~v~~~~~ 1115 (1326)
.++.+.++|......-++++++.|..
T Consensus 271 AGdnvg~llRg~~r~~veRGqvLakpgs 298 (394)
T COG0050 271 AGDNVGVLLRGVKREDVERGQVLAKPGS 298 (394)
T ss_pred cCCCcceEEEeccccceecceEeecCCc
Confidence 46888888988877778888887753
No 26
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=2.7e-29 Score=278.01 Aligned_cols=258 Identities=27% Similarity=0.386 Sum_probs=196.9
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcC----------------cccccccCceeeeeeeeEeccccchhhhhhhccccccCCCC
Q 000728 795 PICCIMGHVDTGKTKLLDCIRGT----------------NVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPG 858 (1326)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~~----------------~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~ 858 (1326)
.+|+-+||+|||||||..+|... +..+..++|||+..... .|++- .++
T Consensus 55 vNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHv--eYeTa--------------~Rh 118 (449)
T KOG0460|consen 55 VNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHV--EYETA--------------KRH 118 (449)
T ss_pred ccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeee--eeecc--------------ccc
Confidence 35999999999999999999631 12344568888765433 33321 246
Q ss_pred EEEEeCCCCcchhhhhhhccCccceeEEeeccccCCchhHHHHHHHHHhcCCc-EEEEEeccccccCcccCCCchHHHHH
Q 000728 859 LLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTE-FIVALNKVDRLYGWKTCRNAPIVKAI 937 (1326)
Q Consensus 859 I~IIDTPGhe~F~~lr~rg~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~vP-~IVvINKiD~~~~w~~~~~a~~~~~L 937 (1326)
+--+|+|||.+|..++..|....|++||||.+++|.+|||++||.++++.+++ +||+|||.|++. .+...+.+
T Consensus 119 YaH~DCPGHADYIKNMItGaaqMDGaILVVaatDG~MPQTrEHlLLArQVGV~~ivvfiNKvD~V~------d~e~leLV 192 (449)
T KOG0460|consen 119 YAHTDCPGHADYIKNMITGAAQMDGAILVVAATDGPMPQTREHLLLARQVGVKHIVVFINKVDLVD------DPEMLELV 192 (449)
T ss_pred cccCCCCchHHHHHHhhcCccccCceEEEEEcCCCCCcchHHHHHHHHHcCCceEEEEEecccccC------CHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999986 788999999984 23322222
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcC---CC----C---hhhHHHHHHHHHHHhH
Q 000728 938 KQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAIS---GE----G---IPDLLLLLVQWTQKTM 1007 (1326)
Q Consensus 938 ~~q~~~~~~e~~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~t---Ge----G---I~eLl~~L~~~~q~~l 1007 (1326)
--.++.+|.++||+ |.++|+|..||+. |. | |..|++.+-.+++.+.
T Consensus 193 --------------EmE~RElLse~gf~----------Gd~~PvI~GSAL~ALeg~~peig~~aI~kLldavDsyip~P~ 248 (449)
T KOG0460|consen 193 --------------EMEIRELLSEFGFD----------GDNTPVIRGSALCALEGRQPEIGLEAIEKLLDAVDSYIPTPE 248 (449)
T ss_pred --------------HHHHHHHHHHcCCC----------CCCCCeeecchhhhhcCCCccccHHHHHHHHHHHhccCCCcc
Confidence 12567788999986 6789999998874 32 2 3333443333333221
Q ss_pred hhhhhcccccceeEEEEEEEeCceeEEEEEEEeeEecCCCEEEEccCCCceeeeeeeccCCCCCceeeecceeecccccc
Q 000728 1008 VEKLTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIK 1087 (1326)
Q Consensus 1008 ~e~l~~~~~~~~~VlEvk~~~G~Gtvi~giV~~G~Lr~GD~IVl~g~~g~~~~~IR~Ll~p~p~~e~rVk~~~~~~k~v~ 1087 (1326)
-....||.++|-.+|.+.|+|||++|+|.+|+|+.|+.+-|.|.+..+- ..|.|++++++.+.
T Consensus 249 ---R~~~~pFl~pie~vfsI~GRGTVvtGrlERG~lKkG~e~eivG~~~~lk--------------ttvtgiemF~K~ld 311 (449)
T KOG0460|consen 249 ---RDLDKPFLLPIEDVFSIPGRGTVVTGRLERGVLKKGDEVEIVGHNKTLK--------------TTVTGIEMFRKSLD 311 (449)
T ss_pred ---cccCCCceeehhheeeecCCceEEEEEEeecccccCCEEEEeccCccee--------------eEeehHHHHHHHHH
Confidence 1235678999999999999999999999999999999998887663322 24678889998887
Q ss_pred ccc---ceeeeccccccccCCCceEEcCCcc
Q 000728 1088 AAQ---GIKITAQGLEHAIAGTGLYVVGPDD 1115 (1326)
Q Consensus 1088 aa~---gv~i~~~gl~~~~aG~~~~v~~~~~ 1115 (1326)
.|+ .+-+.++|+......++++++.|..
T Consensus 312 ~a~AGDn~G~LlRGik~~dvkRGmvl~~pGs 342 (449)
T KOG0460|consen 312 EAQAGDNLGALLRGIKREDVKRGMVLAKPGS 342 (449)
T ss_pred hcccccceehhhhcCCHHHHhcccEEecCCc
Confidence 765 3677788998888888888887764
No 27
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.96 E-value=1.5e-28 Score=304.09 Aligned_cols=225 Identities=27% Similarity=0.302 Sum_probs=171.4
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCc--ccc--------------cccCceeeeeeeeEeccccchhhhhhhccccccC
Q 000728 792 LRSPICCIMGHVDTGKTKLLDCIRGTN--VQE--------------GEAGGITQQIGATYFPAENIRERTRELKANATLK 855 (1326)
Q Consensus 792 ~R~piV~IlGhvdaGKTTLLd~L~~~~--v~~--------------ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~ 855 (1326)
+|| |+|+||+|||||||+++|+... +.. ...+|||.....+.+.| .
T Consensus 1 iRN--IaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~----------------~ 62 (594)
T TIGR01394 1 IRN--IAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRY----------------N 62 (594)
T ss_pred CcE--EEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEE----------------C
Confidence 577 9999999999999999998632 111 12345665555554444 3
Q ss_pred CCCEEEEeCCCCcchhhhhhhccCccceeEEeeccccCCchhHHHHHHHHHhcCCcEEEEEeccccccCcccCCCchHHH
Q 000728 856 VPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVK 935 (1326)
Q Consensus 856 ~~~I~IIDTPGhe~F~~lr~rg~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~vP~IVvINKiD~~~~w~~~~~a~~~~ 935 (1326)
...|+|||||||.+|...+.++++.+|++|||||+.+|+++||..+|..+...++|+|||+||||+.. +.+..
T Consensus 63 ~~kinlIDTPGh~DF~~ev~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~~ip~IVviNKiD~~~-------a~~~~ 135 (594)
T TIGR01394 63 GTKINIVDTPGHADFGGEVERVLGMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPS-------ARPDE 135 (594)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHCCCCEEEEEECCCCCC-------cCHHH
Confidence 35699999999999999999999999999999999999999999999999999999999999999862 22211
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCC----------ChhhHHHHHHHHHHH
Q 000728 936 AIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGE----------GIPDLLLLLVQWTQK 1005 (1326)
Q Consensus 936 ~L~~q~~~~~~e~~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGe----------GI~eLl~~L~~~~q~ 1005 (1326)
. +..+...|...|...+ .-.+|++++||++|. ||..||+.|+.+++.
T Consensus 136 v---------------~~ei~~l~~~~g~~~e--------~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~ 192 (594)
T TIGR01394 136 V---------------VDEVFDLFAELGADDE--------QLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPA 192 (594)
T ss_pred H---------------HHHHHHHHHhhccccc--------cccCcEEechhhcCcccccCcccccCHHHHHHHHHHhCCC
Confidence 1 2233333433332211 124789999999996 799999998887764
Q ss_pred hHhhhhhcccccceeEEEEEEEeCceeEEEEEEEeeEecCCCEEEEccCCCc-eeeeeeeccC
Q 000728 1006 TMVEKLTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGP-IVTTIRALLT 1067 (1326)
Q Consensus 1006 ~l~e~l~~~~~~~~~VlEvk~~~G~Gtvi~giV~~G~Lr~GD~IVl~g~~g~-~~~~IR~Ll~ 1067 (1326)
+. -....||++.|..+++..+.|+++.++|.+|+|+.||.|++++.++. ...+|..|+.
T Consensus 193 P~---~~~~~pl~~~V~~i~~d~~~Grv~~gRV~sG~lk~G~~V~~~~~~~~~~~~kV~~i~~ 252 (594)
T TIGR01394 193 PK---GDLDEPLQMLVTNLDYDEYLGRIAIGRVHRGTVKKGQQVALMKRDGTIENGRISKLLG 252 (594)
T ss_pred CC---CCCCCCEEEEEEEEEeeCCCceEEEEEEEeCEEccCCEEEEecCCCceeEEEEEEEEE
Confidence 42 13456899999999999999999999999999999999998876443 2345555553
No 28
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.96 E-value=2.1e-28 Score=294.38 Aligned_cols=258 Identities=27% Similarity=0.397 Sum_probs=184.5
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcC--ccc-----------------------------ccccCceeeeeeeeEeccccchh
Q 000728 795 PICCIMGHVDTGKTKLLDCIRGT--NVQ-----------------------------EGEAGGITQQIGATYFPAENIRE 843 (1326)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~~--~v~-----------------------------~ge~gGITq~iga~~~~~~~~~~ 843 (1326)
.+|+|+||+|||||||+++|+.. .+. ....+|+|.+++...+.+.
T Consensus 8 ~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~---- 83 (426)
T TIGR00483 8 INVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETD---- 83 (426)
T ss_pred eEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccC----
Confidence 45999999999999999999852 111 0113467777666655443
Q ss_pred hhhhhccccccCCCCEEEEeCCCCcchhhhhhhccCccceeEEeeccccC---CchhHHHHHHHHHhcCC-cEEEEEecc
Q 000728 844 RTRELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHG---LEPQTIESLNLLKMRNT-EFIVALNKV 919 (1326)
Q Consensus 844 ~~~~v~~~~~~~~~~I~IIDTPGhe~F~~lr~rg~~~aDiaILVVDa~~G---v~~QT~E~l~~l~~~~v-P~IVvINKi 919 (1326)
...|+|||||||..|...+..++..+|++|||||++++ ..+||.+++.++...++ |+|||+||+
T Consensus 84 ------------~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~~~iIVviNK~ 151 (426)
T TIGR00483 84 ------------KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGINQLIVAINKM 151 (426)
T ss_pred ------------CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCCCeEEEEEECh
Confidence 24599999999999998888899999999999999999 88999999888877775 689999999
Q ss_pred ccccCcccCCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHH
Q 000728 920 DRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLL 999 (1326)
Q Consensus 920 D~~~~w~~~~~a~~~~~L~~q~~~~~~e~~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L 999 (1326)
|++ +|.. ..+......+...+...|+.. ..++||+|||++|.||.++...+
T Consensus 152 Dl~-~~~~------------------~~~~~~~~ei~~~~~~~g~~~----------~~~~~i~iSA~~g~ni~~~~~~~ 202 (426)
T TIGR00483 152 DSV-NYDE------------------EEFEAIKKEVSNLIKKVGYNP----------DTVPFIPISAWNGDNVIKKSENT 202 (426)
T ss_pred hcc-CccH------------------HHHHHHHHHHHHHHHHcCCCc----------ccceEEEeeccccccccccccCC
Confidence 996 2211 111222234444555555431 34799999999999998755443
Q ss_pred HHHHHHhHhhhhh--------cccccceeEEEEEEEeCceeEEEEEEEeeEecCCCEEEEccCCCceeeeeeeccCCCCC
Q 000728 1000 VQWTQKTMVEKLT--------FRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPM 1071 (1326)
Q Consensus 1000 ~~~~q~~l~e~l~--------~~~~~~~~VlEvk~~~G~Gtvi~giV~~G~Lr~GD~IVl~g~~g~~~~~IR~Ll~p~p~ 1071 (1326)
.|+....+++.|. ...|+++.|.++|.+.|.|++++|+|.+|+|++||.|++++.+ .
T Consensus 203 ~w~~g~~l~~~l~~~~~~~~~~~~p~r~~i~~v~~~~g~G~vv~G~v~~G~i~~gd~v~i~P~~--~------------- 267 (426)
T TIGR00483 203 PWYKGKTLLEALDALEPPEKPTDKPLRIPIQDVYSITGVGTVPVGRVETGVLKPGDKVVFEPAG--V------------- 267 (426)
T ss_pred ccccchHHHHHHhcCCCCCCccCCCcEEEEEEEEecCCCeEEEEEEEccceeecCCEEEECCCC--c-------------
Confidence 3322222333222 2357899999999999999999999999999999999886543 1
Q ss_pred ceeeecceeecccccccc---cceeeeccccccccCCCceEEcCC
Q 000728 1072 KELRVKGTYLHHKQIKAA---QGIKITAQGLEHAIAGTGLYVVGP 1113 (1326)
Q Consensus 1072 ~e~rVk~~~~~~k~v~aa---~gv~i~~~gl~~~~aG~~~~v~~~ 1113 (1326)
..+|+++++|+..+..| ..+.|.++|++....-.+++++.+
T Consensus 268 -~~~VksI~~~~~~~~~a~aG~~v~i~l~~i~~~~i~rG~vl~~~ 311 (426)
T TIGR00483 268 -SGEVKSIEMHHEQIEQAEPGDNIGFNVRGVSKKDIRRGDVCGHP 311 (426)
T ss_pred -EEEEEEEEECCcccCEEcCCCEEEEEECCCChhhcccceEEecC
Confidence 34566777777666544 346666677665545556666544
No 29
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.96 E-value=3.5e-28 Score=277.95 Aligned_cols=259 Identities=25% Similarity=0.292 Sum_probs=197.5
Q ss_pred cCCCCCEEEEEeCCCCCHHHHHHHHHcCcc--ccc--------------ccCceeeeeeeeEeccccchhhhhhhccccc
Q 000728 790 ENLRSPICCIMGHVDTGKTKLLDCIRGTNV--QEG--------------EAGGITQQIGATYFPAENIRERTRELKANAT 853 (1326)
Q Consensus 790 ~~~R~piV~IlGhvdaGKTTLLd~L~~~~v--~~g--------------e~gGITq~iga~~~~~~~~~~~~~~v~~~~~ 853 (1326)
.++|| |+|+.|||||||||++.|+.++- ... ..+|||+-.-.+.+ .
T Consensus 3 ~~iRN--IAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav----------------~ 64 (603)
T COG1217 3 EDIRN--IAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAV----------------N 64 (603)
T ss_pred cccce--eEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEecccee----------------e
Confidence 46888 99999999999999999996532 111 12444443333333 4
Q ss_pred cCCCCEEEEeCCCCcchhhhhhhccCccceeEEeeccccCCchhHHHHHHHHHhcCCcEEEEEeccccccCcccCCCchH
Q 000728 854 LKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPI 933 (1326)
Q Consensus 854 ~~~~~I~IIDTPGhe~F~~lr~rg~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~vP~IVvINKiD~~~~w~~~~~a~~ 933 (1326)
|+...|+|+|||||.+|...+.|.++..|+|||||||.+|.+|||+-.+.-+...+++.||||||||++.. ..
T Consensus 65 ~~~~~INIvDTPGHADFGGEVERvl~MVDgvlLlVDA~EGpMPQTrFVlkKAl~~gL~PIVVvNKiDrp~A-------rp 137 (603)
T COG1217 65 YNGTRINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALALGLKPIVVINKIDRPDA-------RP 137 (603)
T ss_pred cCCeEEEEecCCCcCCccchhhhhhhhcceEEEEEEcccCCCCchhhhHHHHHHcCCCcEEEEeCCCCCCC-------CH
Confidence 55667999999999999999999999999999999999999999999999999999999999999999742 11
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCC----------ChhhHHHHHHHHH
Q 000728 934 VKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGE----------GIPDLLLLLVQWT 1003 (1326)
Q Consensus 934 ~~~L~~q~~~~~~e~~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGe----------GI~eLl~~L~~~~ 1003 (1326)
...++.+...|...|-+.+. -.+|+|..||+.|. ++..||+.|+.++
T Consensus 138 ---------------~~Vvd~vfDLf~~L~A~deQ--------LdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hv 194 (603)
T COG1217 138 ---------------DEVVDEVFDLFVELGATDEQ--------LDFPIVYASARNGTASLDPEDEADDMAPLFETILDHV 194 (603)
T ss_pred ---------------HHHHHHHHHHHHHhCCChhh--------CCCcEEEeeccCceeccCccccccchhHHHHHHHHhC
Confidence 23355666777776654332 35899999999884 5777888888877
Q ss_pred HHhHhhhhhcccccceeEEEEEEEeCceeEEEEEEEeeEecCCCEEEEccCCCce-eeeeeeccCCCCCceeeecceeec
Q 000728 1004 QKTMVEKLTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPI-VTTIRALLTPHPMKELRVKGTYLH 1082 (1326)
Q Consensus 1004 q~~l~e~l~~~~~~~~~VlEvk~~~G~Gtvi~giV~~G~Lr~GD~IVl~g~~g~~-~~~IR~Ll~p~p~~e~rVk~~~~~ 1082 (1326)
+.+. .+...||++.|.-.-|..-+|....|+|.+|++++|+.+.++...|.+ ..+|..||....++..
T Consensus 195 p~P~---~~~d~PlQ~qvt~Ldyn~y~GrIgigRi~~G~vk~~q~V~~i~~~g~~~~gri~kllgf~GL~R~-------- 263 (603)
T COG1217 195 PAPK---GDLDEPLQMQVTQLDYNSYVGRIGIGRIFRGTVKPNQQVALIKSDGTTENGRITKLLGFLGLERI-------- 263 (603)
T ss_pred CCCC---CCCCCCeEEEEEeeccccccceeEEEEEecCcccCCCeEEEEcCCCcEEeeEEEeeeeccceeee--------
Confidence 6543 456778999888888889999999999999999999999888766554 3456666654443322
Q ss_pred cccccc-ccceeeeccccccccCCCceE
Q 000728 1083 HKQIKA-AQGIKITAQGLEHAIAGTGLY 1109 (1326)
Q Consensus 1083 ~k~v~a-a~gv~i~~~gl~~~~aG~~~~ 1109 (1326)
++.. ..|..|++.||+...+|+++.
T Consensus 264 --ei~eA~AGDIVaiaG~~~~~igdTi~ 289 (603)
T COG1217 264 --EIEEAEAGDIVAIAGLEDINIGDTIC 289 (603)
T ss_pred --ecccccccCEEEEcCccccccccccc
Confidence 2333 356777778888777776553
No 30
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=5.2e-28 Score=278.92 Aligned_cols=248 Identities=29% Similarity=0.428 Sum_probs=201.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCcc---cccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchhh
Q 000728 796 ICCIMGHVDTGKTKLLDCIRGTNV---QEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 872 (1326)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~~~v---~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~~ 872 (1326)
+|+.+||++||||||+..|.+..- .....+|||.++|.+|++... ..+.|||+|||++|..
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d----------------~~~~fIDvpgh~~~i~ 65 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLED----------------GVMGFIDVPGHPDFIS 65 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCC----------------CceEEeeCCCcHHHHH
Confidence 799999999999999999987542 344468999999999998764 2499999999999999
Q ss_pred hhhhccCccceeEEeeccccCCchhHHHHHHHHHhcCCcE-EEEEeccccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000728 873 LRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEF-IVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1326)
Q Consensus 873 lr~rg~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~vP~-IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~e~~~~ 951 (1326)
.+..++...|++||||++++|+++||.|||..|...+++- |||+||+|++.. + +....
T Consensus 66 ~miag~~~~d~alLvV~~deGl~~qtgEhL~iLdllgi~~giivltk~D~~d~------~---------------r~e~~ 124 (447)
T COG3276 66 NLLAGLGGIDYALLVVAADEGLMAQTGEHLLILDLLGIKNGIIVLTKADRVDE------A---------------RIEQK 124 (447)
T ss_pred HHHhhhcCCceEEEEEeCccCcchhhHHHHHHHHhcCCCceEEEEeccccccH------H---------------HHHHH
Confidence 9999999999999999999999999999999999999875 999999999731 0 11122
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHHHHHhHhhhhhcccccceeEEEEEEEeCce
Q 000728 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQCTVLEVKVIEGHG 1031 (1326)
Q Consensus 952 l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~q~~l~e~l~~~~~~~~~VlEvk~~~G~G 1031 (1326)
+..|...+. | .+.++|++|+.+|+||.+|.+.|..+.. ....+...+|+..|.-+|.++|.|
T Consensus 125 i~~Il~~l~---l------------~~~~i~~~s~~~g~GI~~Lk~~l~~L~~---~~e~d~~~~fri~IDraFtVKGvG 186 (447)
T COG3276 125 IKQILADLS---L------------ANAKIFKTSAKTGRGIEELKNELIDLLE---EIERDEQKPFRIAIDRAFTVKGVG 186 (447)
T ss_pred HHHHHhhcc---c------------ccccccccccccCCCHHHHHHHHHHhhh---hhhhccCCceEEEEeeEEEecccc
Confidence 233333332 1 3468899999999999999999987664 122356788999999999999999
Q ss_pred eEEEEEEEeeEecCCCEEEEccCCCceeeeeeeccCCCCCceeeecceeeccccccc---ccceeeeccccccccCCCce
Q 000728 1032 TTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKA---AQGIKITAQGLEHAIAGTGL 1108 (1326)
Q Consensus 1032 tvi~giV~~G~Lr~GD~IVl~g~~g~~~~~IR~Ll~p~p~~e~rVk~~~~~~k~v~a---a~gv~i~~~gl~~~~aG~~~ 1108 (1326)
||++|.+.+|.+++||.+++.|.+ ++++|++|+.|...+.. ++.|.++++|.+.-..-+++
T Consensus 187 TVVtGtv~sG~V~v~D~L~l~p~~----------------k~v~VRsIq~~d~d~~~a~AG~RVgLaL~~v~~eei~RG~ 250 (447)
T COG3276 187 TVVTGTVLSGEVKVGDKLYLSPIN----------------KEVRVRSIQAHDVDVEEAKAGQRVGLALKGVEKEEIERGD 250 (447)
T ss_pred EEEEeEEeeeeEEECCEEEEecCC----------------CeEEEEeeeecCcchhhccccceeeeecCCCCHHHhhccc
Confidence 999999999999999999987654 46778888888766554 45577777787655667788
Q ss_pred EEcCCc
Q 000728 1109 YVVGPD 1114 (1326)
Q Consensus 1109 ~v~~~~ 1114 (1326)
++++++
T Consensus 251 ~L~~~~ 256 (447)
T COG3276 251 WLLKPE 256 (447)
T ss_pred EeccCC
Confidence 877765
No 31
>PRK10218 GTP-binding protein; Provisional
Probab=99.95 E-value=2.5e-27 Score=292.86 Aligned_cols=258 Identities=22% Similarity=0.248 Sum_probs=183.8
Q ss_pred cCCCCCEEEEEeCCCCCHHHHHHHHHcC--cccc--------------cccCceeeeeeeeEeccccchhhhhhhccccc
Q 000728 790 ENLRSPICCIMGHVDTGKTKLLDCIRGT--NVQE--------------GEAGGITQQIGATYFPAENIRERTRELKANAT 853 (1326)
Q Consensus 790 ~~~R~piV~IlGhvdaGKTTLLd~L~~~--~v~~--------------ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~ 853 (1326)
.++|+ |+|+||+|||||||+++|+.. .+.. ....|||.......+.+.
T Consensus 3 ~~iRn--IaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~-------------- 66 (607)
T PRK10218 3 EKLRN--IAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWN-------------- 66 (607)
T ss_pred CCceE--EEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecC--------------
Confidence 35787 999999999999999999962 2211 123456655555554443
Q ss_pred cCCCCEEEEeCCCCcchhhhhhhccCccceeEEeeccccCCchhHHHHHHHHHhcCCcEEEEEeccccccCcccCCCchH
Q 000728 854 LKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPI 933 (1326)
Q Consensus 854 ~~~~~I~IIDTPGhe~F~~lr~rg~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~vP~IVvINKiD~~~~w~~~~~a~~ 933 (1326)
...|+|||||||.+|..++.++++.+|++|||||+.+|+++||..+|..+...++|+|||+||||+. ++.+
T Consensus 67 --~~~inliDTPG~~df~~~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~gip~IVviNKiD~~-------~a~~ 137 (607)
T PRK10218 67 --DYRINIVDTPGHADFGGEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPIVVINKVDRP-------GARP 137 (607)
T ss_pred --CEEEEEEECCCcchhHHHHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHHcCCCEEEEEECcCCC-------CCch
Confidence 3459999999999999999999999999999999999999999999999999999999999999986 2333
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCC----------ChhhHHHHHHHHH
Q 000728 934 VKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGE----------GIPDLLLLLVQWT 1003 (1326)
Q Consensus 934 ~~~L~~q~~~~~~e~~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGe----------GI~eLl~~L~~~~ 1003 (1326)
...+ ..+...|...++.. ....+|++++||++|. ||..||+.|+.++
T Consensus 138 ~~vl---------------~ei~~l~~~l~~~~--------~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~i 194 (607)
T PRK10218 138 DWVV---------------DQVFDLFVNLDATD--------EQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHV 194 (607)
T ss_pred hHHH---------------HHHHHHHhccCccc--------cccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhC
Confidence 2222 22223332222211 1234799999999998 5788888888777
Q ss_pred HHhHhhhhhcccccceeEEEEEEEeCceeEEEEEEEeeEecCCCEEEEccCCCce-eeeeeeccCCCCCceeeecceeec
Q 000728 1004 QKTMVEKLTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPI-VTTIRALLTPHPMKELRVKGTYLH 1082 (1326)
Q Consensus 1004 q~~l~e~l~~~~~~~~~VlEvk~~~G~Gtvi~giV~~G~Lr~GD~IVl~g~~g~~-~~~IR~Ll~p~p~~e~rVk~~~~~ 1082 (1326)
+.+. .....||++.|..+++..+.|+++.++|.+|+|+.||.|++++..+.. ..+|..|+......
T Consensus 195 P~P~---~~~~~Pl~~~V~k~~~d~~~G~i~~gRV~sG~lk~Gd~v~~~~~~~~~~~~rv~~l~~~~g~~---------- 261 (607)
T PRK10218 195 PAPD---VDLDGPFQMQISQLDYNSYVGVIGIGRIKRGKVKPNQQVTIIDSEGKTRNAKVGKVLGHLGLE---------- 261 (607)
T ss_pred CCCC---CCCCCCeEEEEEeeEecCCCcEEEEEEEEeCcCcCCCEEEEecCCCcEeeEEEEEEEEEecCC----------
Confidence 6442 134568999999999999999999999999999999999887653321 23444443222111
Q ss_pred cccccc-ccceeeeccccccccCCCce
Q 000728 1083 HKQIKA-AQGIKITAQGLEHAIAGTGL 1108 (1326)
Q Consensus 1083 ~k~v~a-a~gv~i~~~gl~~~~aG~~~ 1108 (1326)
+..+.. ..|-.+++.||.....|+.+
T Consensus 262 ~~~v~~a~AGdIvai~gl~~~~~GdTl 288 (607)
T PRK10218 262 RIETDLAEAGDIVAITGLGELNISDTV 288 (607)
T ss_pred ceECCEEcCCCEEEEECccccccCcEE
Confidence 112222 23555555667666666554
No 32
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.95 E-value=1.7e-27 Score=273.28 Aligned_cols=213 Identities=28% Similarity=0.367 Sum_probs=174.1
Q ss_pred ccCCCCCEEEEEeCCCCCHHHHHHHHHcCc---------------ccccccCceeeeeeeeEeccccchhhhhhhccccc
Q 000728 789 EENLRSPICCIMGHVDTGKTKLLDCIRGTN---------------VQEGEAGGITQQIGATYFPAENIRERTRELKANAT 853 (1326)
Q Consensus 789 ~~~~R~piV~IlGhvdaGKTTLLd~L~~~~---------------v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~ 853 (1326)
..++|| ++|+.|.|||||||.++|+... ......+|||....+..+.+..-.
T Consensus 6 ~~~IRN--FsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~----------- 72 (603)
T COG0481 6 QKNIRN--FSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKD----------- 72 (603)
T ss_pred hhhccc--eEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCC-----------
Confidence 457898 8999999999999999997421 122345889988877777664311
Q ss_pred cCCCCEEEEeCCCCcchhhhhhhccCccceeEEeeccccCCchhHHHHHHHHHhcCCcEEEEEeccccccCcccCCCchH
Q 000728 854 LKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPI 933 (1326)
Q Consensus 854 ~~~~~I~IIDTPGhe~F~~lr~rg~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~vP~IVvINKiD~~~~w~~~~~a~~ 933 (1326)
-..+.++|||||||.+|+-.++|.+..|.++||||||+.|++.||+....++...++-+|.||||||++ .++.
T Consensus 73 g~~Y~lnlIDTPGHVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~~LeIiPViNKIDLP-------~Adp 145 (603)
T COG0481 73 GETYVLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLP-------AADP 145 (603)
T ss_pred CCEEEEEEcCCCCccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHcCcEEEEeeecccCC-------CCCH
Confidence 123569999999999999999999999999999999999999999999999999999999999999996 3443
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHH-cCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHHHHHhHhhhhh
Q 000728 934 VKAIKQQNTDVQNEFNMRLVQIVTQLKE-QGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLT 1012 (1326)
Q Consensus 934 ~~~L~~q~~~~~~e~~~~l~~I~~~L~e-~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~q~~l~e~l~ 1012 (1326)
.. +..++.. .|+.. ...|.+||+||.||+++|+.|+..++.+- -.
T Consensus 146 er-------------------vk~eIe~~iGid~------------~dav~~SAKtG~gI~~iLe~Iv~~iP~P~---g~ 191 (603)
T COG0481 146 ER-------------------VKQEIEDIIGIDA------------SDAVLVSAKTGIGIEDVLEAIVEKIPPPK---GD 191 (603)
T ss_pred HH-------------------HHHHHHHHhCCCc------------chheeEecccCCCHHHHHHHHHhhCCCCC---CC
Confidence 22 2222211 24432 36789999999999999999998877653 34
Q ss_pred cccccceeEEEEEEEeCceeEEEEEEEeeEecCCCEEEEccCC
Q 000728 1013 FRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQ 1055 (1326)
Q Consensus 1013 ~~~~~~~~VlEvk~~~G~Gtvi~giV~~G~Lr~GD~IVl~g~~ 1055 (1326)
.+.|+++.|+++++..-+|.++.++|.+|+|+.||.|.++.++
T Consensus 192 ~~~pLkALifDS~yD~Y~GVv~~vRi~dG~ik~gdki~~m~tg 234 (603)
T COG0481 192 PDAPLKALIFDSWYDNYLGVVVLVRIFDGTLKKGDKIRMMSTG 234 (603)
T ss_pred CCCcceEEEEeccccccceEEEEEEEeeceecCCCEEEEEecC
Confidence 6778999999999999999999999999999999999888775
No 33
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.95 E-value=7.2e-27 Score=279.20 Aligned_cols=254 Identities=23% Similarity=0.323 Sum_probs=165.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCc--ccc-------------c------------------ccCceeeeeeeeEeccccch
Q 000728 796 ICCIMGHVDTGKTKLLDCIRGTN--VQE-------------G------------------EAGGITQQIGATYFPAENIR 842 (1326)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~~~--v~~-------------g------------------e~gGITq~iga~~~~~~~~~ 842 (1326)
.|+|+||+|||||||+++|++.. +.. + ..+|+|.+++..++.
T Consensus 2 ~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~----- 76 (406)
T TIGR02034 2 RFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFS----- 76 (406)
T ss_pred eEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEc-----
Confidence 48999999999999999997432 110 1 113344444433333
Q ss_pred hhhhhhccccccCCCCEEEEeCCCCcchhhhhhhccCccceeEEeeccccCCchhHHHHHHHHHhcCCc-EEEEEecccc
Q 000728 843 ERTRELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTE-FIVALNKVDR 921 (1326)
Q Consensus 843 ~~~~~v~~~~~~~~~~I~IIDTPGhe~F~~lr~rg~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~vP-~IVvINKiD~ 921 (1326)
+....|+|||||||.+|...+..++..+|++|||||+..|+++||.+++.++...++| +|||+||||+
T Consensus 77 -----------~~~~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~~~~~iivviNK~D~ 145 (406)
T TIGR02034 77 -----------TDKRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLLGIRHVVLAVNKMDL 145 (406)
T ss_pred -----------cCCeEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHcCCCcEEEEEEeccc
Confidence 3334699999999999998888999999999999999999999999999999988875 8889999999
Q ss_pred ccCcccCCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHH
Q 000728 922 LYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1001 (1326)
Q Consensus 922 ~~~w~~~~~a~~~~~L~~q~~~~~~e~~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~ 1001 (1326)
+. |.. .. +......+...+...++ ..+++|||||++|.||..+...+.|
T Consensus 146 ~~-~~~----~~--------------~~~i~~~~~~~~~~~~~------------~~~~iipiSA~~g~ni~~~~~~~~w 194 (406)
T TIGR02034 146 VD-YDE----EV--------------FENIKKDYLAFAEQLGF------------RDVTFIPLSALKGDNVVSRSESMPW 194 (406)
T ss_pred cc-chH----HH--------------HHHHHHHHHHHHHHcCC------------CCccEEEeecccCCCCcccccCCCc
Confidence 62 210 00 11111222223333332 2468999999999999865332222
Q ss_pred HHHHhHhhhh--------hcccccceeEEEEEEEeCceeEEEEEEEeeEecCCCEEEEccCCCceeeeeeeccCCCCCce
Q 000728 1002 WTQKTMVEKL--------TFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKE 1073 (1326)
Q Consensus 1002 ~~q~~l~e~l--------~~~~~~~~~VlEvk~~~G~Gtvi~giV~~G~Lr~GD~IVl~g~~g~~~~~IR~Ll~p~p~~e 1073 (1326)
+-...|.+.| ....++++.|..++.....+..+.|.|.+|+|++||.|++++.+ . .
T Consensus 195 y~g~tL~~~L~~~~~~~~~~~~p~r~~i~~v~~~~~~~~g~~G~v~~G~l~~gd~v~i~P~~--~--------------~ 258 (406)
T TIGR02034 195 YSGPTLLEILETVEVERDAQDLPLRFPVQYVNRPNLDFRGYAGTIASGSVHVGDEVVVLPSG--R--------------S 258 (406)
T ss_pred cchhHHHHHHHhcCCCCCcCCCCcccceEEEeecCCCcEEEEEEEecceeecCCEEEEeCCC--c--------------E
Confidence 1111122211 12356888888876543222236799999999999999887542 2 3
Q ss_pred eeecceeeccccccccc---ceeeeccccccccCCCceEEcCCc
Q 000728 1074 LRVKGTYLHHKQIKAAQ---GIKITAQGLEHAIAGTGLYVVGPD 1114 (1326)
Q Consensus 1074 ~rVk~~~~~~k~v~aa~---gv~i~~~gl~~~~aG~~~~v~~~~ 1114 (1326)
.+|+++++|+..+..|. .+.|.+.+. .....+++++.+.
T Consensus 259 ~~VksI~~~~~~~~~a~~G~~v~l~l~~~--~~i~rG~vl~~~~ 300 (406)
T TIGR02034 259 SRVARIVTFDGDLEQARAGQAVTLTLDDE--IDISRGDLLAAAD 300 (406)
T ss_pred EEEEEEEECCcccCEeCCCCEEEEEECCc--cccCCccEEEcCC
Confidence 45666777766655442 345554432 2234455666553
No 34
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.94 E-value=2e-26 Score=275.40 Aligned_cols=280 Identities=23% Similarity=0.243 Sum_probs=185.5
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCcc---cccccCceeeeeeeeEeccccchh------h-hhhh-cc--ccccCCCCEE
Q 000728 794 SPICCIMGHVDTGKTKLLDCIRGTNV---QEGEAGGITQQIGATYFPAENIRE------R-TREL-KA--NATLKVPGLL 860 (1326)
Q Consensus 794 ~piV~IlGhvdaGKTTLLd~L~~~~v---~~ge~gGITq~iga~~~~~~~~~~------~-~~~v-~~--~~~~~~~~I~ 860 (1326)
..+|+|+||+|||||||+++|.+... .....+|+|..++..++.+..... . +..+ .. ........|+
T Consensus 4 ~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 83 (406)
T TIGR03680 4 EVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRVS 83 (406)
T ss_pred eEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEEE
Confidence 45699999999999999999976432 123357899988866554321000 0 0000 00 0001134699
Q ss_pred EEeCCCCcchhhhhhhccCccceeEEeeccccCC-chhHHHHHHHHHhcCC-cEEEEEeccccccCcccCCCchHHHHHH
Q 000728 861 VIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGL-EPQTIESLNLLKMRNT-EFIVALNKVDRLYGWKTCRNAPIVKAIK 938 (1326)
Q Consensus 861 IIDTPGhe~F~~lr~rg~~~aDiaILVVDa~~Gv-~~QT~E~l~~l~~~~v-P~IVvINKiD~~~~w~~~~~a~~~~~L~ 938 (1326)
|||||||+.|...+.+++..+|++|||||+++|+ ++||.+++.++...++ |+|||+||+|++.. ..
T Consensus 84 liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~gi~~iIVvvNK~Dl~~~-------~~----- 151 (406)
T TIGR03680 84 FVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIGIKNIVIVQNKIDLVSK-------EK----- 151 (406)
T ss_pred EEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcCCCeEEEEEEccccCCH-------HH-----
Confidence 9999999999999999999999999999999998 8999999999988876 58999999998621 00
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHHHHHhHhhhhhcccccc
Q 000728 939 QQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQ 1018 (1326)
Q Consensus 939 ~q~~~~~~e~~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~q~~l~e~l~~~~~~~ 1018 (1326)
....+..+...+... +...+++||+||++|.||+.|+++|..+++.+ .-....+++
T Consensus 152 ---------~~~~~~~i~~~l~~~------------~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~~~---~~~~~~~~~ 207 (406)
T TIGR03680 152 ---------ALENYEEIKEFVKGT------------VAENAPIIPVSALHNANIDALLEAIEKFIPTP---ERDLDKPPL 207 (406)
T ss_pred ---------HHHHHHHHHhhhhhc------------ccCCCeEEEEECCCCCChHHHHHHHHHhCCCC---CCCCCCCcE
Confidence 001112222222211 11347899999999999999999998755422 112356789
Q ss_pred eeEEEEEEEeC--------ceeEEEEEEEeeEecCCCEEEEccCCCceeeeeeeccCCCCCceeeecceeeccccccccc
Q 000728 1019 CTVLEVKVIEG--------HGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAAQ 1090 (1326)
Q Consensus 1019 ~~VlEvk~~~G--------~Gtvi~giV~~G~Lr~GD~IVl~g~~g~~~~~IR~Ll~p~p~~e~rVk~~~~~~k~v~aa~ 1090 (1326)
++|.++|.+.| +|+++.|.|.+|+|++||.|++++........... +. |. ..+|+++++|+..+..|.
T Consensus 208 ~~I~~~f~v~~~g~~~~~~~G~Vv~G~v~~G~i~~gd~v~i~P~~~~~~~g~~~-~~--~~-~~~V~sI~~~~~~~~~a~ 283 (406)
T TIGR03680 208 MYVARSFDVNKPGTPPEKLKGGVIGGSLIQGKLKVGDEIEIRPGIKVEKGGKTK-WE--PI-YTEITSLRAGGYKVEEAR 283 (406)
T ss_pred EEEEEEEeecCCCccccCCceeEEEEEEEeCEEeCCCEEEEccCcccccccccc-cc--cc-ceEEeEEEECCEECCEEc
Confidence 99999998876 57799999999999999999987642000000000 01 11 256788888877666543
Q ss_pred ---ceeeecc---ccccccCCCceEEcCC
Q 000728 1091 ---GIKITAQ---GLEHAIAGTGLYVVGP 1113 (1326)
Q Consensus 1091 ---gv~i~~~---gl~~~~aG~~~~v~~~ 1113 (1326)
.+.|.+. ++.......+.+++.+
T Consensus 284 ~G~~v~i~l~~~~~i~~~dv~~G~vl~~~ 312 (406)
T TIGR03680 284 PGGLVGVGTKLDPALTKADALAGQVVGKP 312 (406)
T ss_pred CCCEEEEeeccCCCCCHHHcccccEEEcC
Confidence 2444432 4443333345555554
No 35
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.94 E-value=2.9e-26 Score=284.76 Aligned_cols=213 Identities=29% Similarity=0.357 Sum_probs=162.7
Q ss_pred cCCCCCEEEEEeCCCCCHHHHHHHHHcCc--ccc-------------cccCceeeeeeeeEeccccchhhhhhhcccccc
Q 000728 790 ENLRSPICCIMGHVDTGKTKLLDCIRGTN--VQE-------------GEAGGITQQIGATYFPAENIRERTRELKANATL 854 (1326)
Q Consensus 790 ~~~R~piV~IlGhvdaGKTTLLd~L~~~~--v~~-------------ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~ 854 (1326)
.++|| |+|+||+|||||||+++|+... +.. ...+|||.....+.+.|.... -
T Consensus 5 ~~iRN--i~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~d-----------g 71 (600)
T PRK05433 5 KNIRN--FSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKD-----------G 71 (600)
T ss_pred ccCCE--EEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccC-----------C
Confidence 46888 9999999999999999998632 111 123566665554444432100 0
Q ss_pred CCCCEEEEeCCCCcchhhhhhhccCccceeEEeeccccCCchhHHHHHHHHHhcCCcEEEEEeccccccCcccCCCchHH
Q 000728 855 KVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIV 934 (1326)
Q Consensus 855 ~~~~I~IIDTPGhe~F~~lr~rg~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~vP~IVvINKiD~~~~w~~~~~a~~~ 934 (1326)
....|+|||||||.+|...+.++++.||++|||||+++|++.||..+|.++...++|+|+|+||+|+.. +.+.
T Consensus 72 ~~~~lnLiDTPGh~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~~~lpiIvViNKiDl~~-------a~~~ 144 (600)
T PRK05433 72 ETYILNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENDLEIIPVLNKIDLPA-------ADPE 144 (600)
T ss_pred CcEEEEEEECCCcHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCc-------ccHH
Confidence 123599999999999999999999999999999999999999999999998888999999999999852 1111
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHHHHHhHhhhhhcc
Q 000728 935 KAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFR 1014 (1326)
Q Consensus 935 ~~L~~q~~~~~~e~~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~q~~l~e~l~~~ 1014 (1326)
.. ...+... .++. ...++++||++|.||.+|+++|+.+++.+. -...
T Consensus 145 ~v---------------~~ei~~~---lg~~------------~~~vi~iSAktG~GI~~Ll~~I~~~lp~P~---~~~~ 191 (600)
T PRK05433 145 RV---------------KQEIEDV---IGID------------ASDAVLVSAKTGIGIEEVLEAIVERIPPPK---GDPD 191 (600)
T ss_pred HH---------------HHHHHHH---hCCC------------cceEEEEecCCCCCHHHHHHHHHHhCcccc---CCCC
Confidence 10 0111111 1221 125899999999999999999988776542 1345
Q ss_pred cccceeEEEEEEEeCceeEEEEEEEeeEecCCCEEEEccCC
Q 000728 1015 NELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQ 1055 (1326)
Q Consensus 1015 ~~~~~~VlEvk~~~G~Gtvi~giV~~G~Lr~GD~IVl~g~~ 1055 (1326)
.|+++.|+.+++.++.|+++.++|.+|+|+.||.|.+++++
T Consensus 192 ~pl~~~Vfd~~~d~~~G~v~~~rV~sG~Lk~Gd~i~~~~~~ 232 (600)
T PRK05433 192 APLKALIFDSWYDNYRGVVVLVRVVDGTLKKGDKIKMMSTG 232 (600)
T ss_pred CCceEEEEEEEecCCCceEEEEEEEcCEEecCCEEEEecCC
Confidence 67999999999999999999999999999999999887754
No 36
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.94 E-value=4.6e-26 Score=282.71 Aligned_cols=212 Identities=26% Similarity=0.337 Sum_probs=161.2
Q ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHcCcc--cc-------------cccCceeeeeeeeEeccccchhhhhhhccccccC
Q 000728 791 NLRSPICCIMGHVDTGKTKLLDCIRGTNV--QE-------------GEAGGITQQIGATYFPAENIRERTRELKANATLK 855 (1326)
Q Consensus 791 ~~R~piV~IlGhvdaGKTTLLd~L~~~~v--~~-------------ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~ 855 (1326)
++|| |+|+||+|||||||+++|+.... .. ...+|||.......+.|.... -.
T Consensus 2 ~iRN--i~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~-----------g~ 68 (595)
T TIGR01393 2 NIRN--FSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKD-----------GE 68 (595)
T ss_pred CeeE--EEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCC-----------CC
Confidence 4787 99999999999999999986421 10 123466666555444432100 01
Q ss_pred CCCEEEEeCCCCcchhhhhhhccCccceeEEeeccccCCchhHHHHHHHHHhcCCcEEEEEeccccccCcccCCCchHHH
Q 000728 856 VPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVK 935 (1326)
Q Consensus 856 ~~~I~IIDTPGhe~F~~lr~rg~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~vP~IVvINKiD~~~~w~~~~~a~~~~ 935 (1326)
...|+|||||||.+|..++.++++.||++|||||+++|++.||..+|..+...++|+|+|+||+|+.. .++..
T Consensus 69 ~~~l~liDTPG~~dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~~~ipiIiViNKiDl~~-------~~~~~ 141 (595)
T TIGR01393 69 TYVLNLIDTPGHVDFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALENDLEIIPVINKIDLPS-------ADPER 141 (595)
T ss_pred EEEEEEEECCCcHHHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCCc-------cCHHH
Confidence 13589999999999999999999999999999999999999999999888888999999999999852 11110
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHHHHHhHhhhhhccc
Q 000728 936 AIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRN 1015 (1326)
Q Consensus 936 ~L~~q~~~~~~e~~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~q~~l~e~l~~~~ 1015 (1326)
. ...+... .|+. ...++++||++|.||.+||++|...++.+.. ....
T Consensus 142 ~---------------~~el~~~---lg~~------------~~~vi~vSAktG~GI~~Lle~I~~~lp~p~~---~~~~ 188 (595)
T TIGR01393 142 V---------------KKEIEEV---IGLD------------ASEAILASAKTGIGIEEILEAIVKRVPPPKG---DPDA 188 (595)
T ss_pred H---------------HHHHHHH---hCCC------------cceEEEeeccCCCCHHHHHHHHHHhCCCCCC---CCCC
Confidence 0 0111111 1221 1258999999999999999999877654321 3456
Q ss_pred ccceeEEEEEEEeCceeEEEEEEEeeEecCCCEEEEccCC
Q 000728 1016 ELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQ 1055 (1326)
Q Consensus 1016 ~~~~~VlEvk~~~G~Gtvi~giV~~G~Lr~GD~IVl~g~~ 1055 (1326)
|+++.|+.++++++.|+++.++|.+|+|+.||.|.+++++
T Consensus 189 pl~~~V~~~~~d~~~G~v~~~rV~sG~lk~Gd~v~~~~~~ 228 (595)
T TIGR01393 189 PLKALIFDSHYDNYRGVVALVRVFEGTIKPGDKIRFMSTG 228 (595)
T ss_pred CeEEEEEEEEEeCCCcEEEEEEEECCEEecCCEEEEecCC
Confidence 8999999999999999999999999999999999887764
No 37
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.94 E-value=6.1e-26 Score=275.42 Aligned_cols=256 Identities=24% Similarity=0.319 Sum_probs=167.2
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCc--ccc-------------c------------------ccCceeeeeeeeEeccccc
Q 000728 795 PICCIMGHVDTGKTKLLDCIRGTN--VQE-------------G------------------EAGGITQQIGATYFPAENI 841 (1326)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~~~--v~~-------------g------------------e~gGITq~iga~~~~~~~~ 841 (1326)
+.|+|+||+|||||||+++|+... +.. | ..+|||.+++..++.
T Consensus 28 ~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~---- 103 (474)
T PRK05124 28 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFS---- 103 (474)
T ss_pred eEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEec----
Confidence 569999999999999999998542 111 1 013444444433333
Q ss_pred hhhhhhhccccccCCCCEEEEeCCCCcchhhhhhhccCccceeEEeeccccCCchhHHHHHHHHHhcCC-cEEEEEeccc
Q 000728 842 RERTRELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNT-EFIVALNKVD 920 (1326)
Q Consensus 842 ~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~~lr~rg~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~v-P~IVvINKiD 920 (1326)
+....|+|||||||..|...+..++..+|++|||||+..|+++||.+++.++...++ |+|||+||||
T Consensus 104 ------------~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~lg~~~iIvvvNKiD 171 (474)
T PRK05124 104 ------------TEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLLGIKHLVVAVNKMD 171 (474)
T ss_pred ------------cCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHhCCCceEEEEEeec
Confidence 233569999999999999888889999999999999999999999999999988885 6889999999
Q ss_pred cccCcccCCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHH
Q 000728 921 RLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLV 1000 (1326)
Q Consensus 921 ~~~~w~~~~~a~~~~~L~~q~~~~~~e~~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~ 1000 (1326)
++. |.. . .+......+...+...++ ...+++||+||++|.||..+...+.
T Consensus 172 ~~~-~~~----~--------------~~~~i~~~l~~~~~~~~~-----------~~~~~iipvSA~~g~ni~~~~~~~~ 221 (474)
T PRK05124 172 LVD-YSE----E--------------VFERIREDYLTFAEQLPG-----------NLDIRFVPLSALEGDNVVSQSESMP 221 (474)
T ss_pred ccc-chh----H--------------HHHHHHHHHHHHHHhcCC-----------CCCceEEEEEeecCCCccccccccc
Confidence 862 211 0 011111122222322221 1247999999999999987654322
Q ss_pred HHHHHhHhhhh--------hcccccceeEEEEEEEeCceeEEEEEEEeeEecCCCEEEEccCCCceeeeeeeccCCCCCc
Q 000728 1001 QWTQKTMVEKL--------TFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMK 1072 (1326)
Q Consensus 1001 ~~~q~~l~e~l--------~~~~~~~~~VlEvk~~~G~Gtvi~giV~~G~Lr~GD~IVl~g~~g~~~~~IR~Ll~p~p~~ 1072 (1326)
|+....+.+.| ....++++.|..++........+.|+|.+|+|++||.|++++++ .
T Consensus 222 wy~G~tLl~~L~~i~~~~~~~~~p~r~~I~~v~~~~~~~~g~~G~V~sG~l~~Gd~v~i~P~~----------------~ 285 (474)
T PRK05124 222 WYSGPTLLEVLETVDIQRVVDAQPFRFPVQYVNRPNLDFRGYAGTLASGVVKVGDRVKVLPSG----------------K 285 (474)
T ss_pred ccchhhHHHHHhhcCCCCCCCCCCceeeEEEEEecCCcccceEEEEEeEEEecCCEEEEecCC----------------c
Confidence 22112222211 12356888888875432211225699999999999999887643 1
Q ss_pred eeeecceeecccccccc---cceeeeccccccccCCCceEEcCCc
Q 000728 1073 ELRVKGTYLHHKQIKAA---QGIKITAQGLEHAIAGTGLYVVGPD 1114 (1326)
Q Consensus 1073 e~rVk~~~~~~k~v~aa---~gv~i~~~gl~~~~aG~~~~v~~~~ 1114 (1326)
.++|+++++|+..+..| ..+.|.+.+ ...+..+++++.+.
T Consensus 286 ~~~VksI~~~~~~v~~A~aG~~V~l~L~~--~~~i~rG~VL~~~~ 328 (474)
T PRK05124 286 ESNVARIVTFDGDLEEAFAGEAITLVLED--EIDISRGDLLVAAD 328 (474)
T ss_pred eEEEEEEEEcCccccCcCCCCEEEEEeCC--ccccCCccEEECCC
Confidence 34566777777665544 335555543 22344555666543
No 38
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=99.94 E-value=3.6e-26 Score=256.32 Aligned_cols=282 Identities=23% Similarity=0.334 Sum_probs=197.3
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCcccccc--------------cCceeeeeeeeEeccccchhhhhhhcccc-------
Q 000728 794 SPICCIMGHVDTGKTKLLDCIRGTNVQEGE--------------AGGITQQIGATYFPAENIRERTRELKANA------- 852 (1326)
Q Consensus 794 ~piV~IlGhvdaGKTTLLd~L~~~~v~~ge--------------~gGITq~iga~~~~~~~~~~~~~~v~~~~------- 852 (1326)
..+|+++||+|||||||+.+|..+....|. .+|.|.+|....+-+...+ ...+....
T Consensus 117 hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk--~~rlknPld~aE~~~ 194 (527)
T COG5258 117 HVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGK--VVRLKNPLDEAEKAA 194 (527)
T ss_pred eEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCc--eEeecCcccHHHHhH
Confidence 356999999999999999999765554443 2445555443333222110 00010000
Q ss_pred --ccCCCCEEEEeCCCCcchhhhhhhcc--CccceeEEeeccccCCchhHHHHHHHHHhcCCcEEEEEeccccccCcccC
Q 000728 853 --TLKVPGLLVIDTPGHESFTNLRSRGS--GLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTC 928 (1326)
Q Consensus 853 --~~~~~~I~IIDTPGhe~F~~lr~rg~--~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~vP~IVvINKiD~~~~w~~~ 928 (1326)
.-...-+.|+||-||+.|...+.||+ ...|+.+|||.|++|++..|.+||.++....+|+|||+||||+.+
T Consensus 195 vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~tkEHLgi~~a~~lPviVvvTK~D~~~----- 269 (527)
T COG5258 195 VVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMTKEHLGIALAMELPVIVVVTKIDMVP----- 269 (527)
T ss_pred hhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhhhHhhhhhhhhcCCEEEEEEecccCc-----
Confidence 00113489999999999988877775 568999999999999999999999999999999999999999973
Q ss_pred CCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCch---hhh------hcccCCCc-ceeEEeCCCcCCCChhhHHHH
Q 000728 929 RNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNT---ELY------YKNKDRGE-TFNIVPTSAISGEGIPDLLLL 998 (1326)
Q Consensus 929 ~~a~~~~~L~~q~~~~~~e~~~~l~~I~~~L~e~Gl~~---e~~------~~~~d~g~-~v~iVpvSA~tGeGI~eLl~~ 998 (1326)
...+...+ ..|...|...|-.+ ... ......+. .+|+|.+|+.||+|++-|..+
T Consensus 270 -ddr~~~v~---------------~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~ 333 (527)
T COG5258 270 -DDRFQGVV---------------EEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEF 333 (527)
T ss_pred -HHHHHHHH---------------HHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHH
Confidence 23232222 22222222222100 000 00011233 799999999999999766555
Q ss_pred HHHHHHHhHhhhhhcccccceeEEEEEEEeCceeEEEEEEEeeEecCCCEEEEccCCCceeeeeeeccCCCCCceeeecc
Q 000728 999 LVQWTQKTMVEKLTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKG 1078 (1326)
Q Consensus 999 L~~~~q~~l~e~l~~~~~~~~~VlEvk~~~G~Gtvi~giV~~G~Lr~GD~IVl~g~~g~~~~~IR~Ll~p~p~~e~rVk~ 1078 (1326)
+. +++..- ...+..+|.+.|.++|.+.|.|+++.|.|.+|.|+.||++++++.. .+.+++++|++
T Consensus 334 f~-~Lp~rr--~~~d~g~flmYId~iYsVtGVGtVvsGsV~~G~l~~gd~vllGP~~------------~G~fr~v~vkS 398 (527)
T COG5258 334 FL-LLPKRR--RWDDEGPFLMYIDKIYSVTGVGTVVSGSVKSGILHVGDTVLLGPFK------------DGKFREVVVKS 398 (527)
T ss_pred HH-hCCccc--ccCCCCCeEEEEEeeEEEeeeEEEEeeeEEeeeeccCCEEEEccCC------------CCcEEEEEEEE
Confidence 54 444322 3466778999999999999999999999999999999999985543 34567889999
Q ss_pred eeecccccccccc---eeeeccccccccCCCceEEcCC
Q 000728 1079 TYLHHKQIKAAQG---IKITAQGLEHAIAGTGLYVVGP 1113 (1326)
Q Consensus 1079 ~~~~~k~v~aa~g---v~i~~~gl~~~~aG~~~~v~~~ 1113 (1326)
|++||-.|.+|.. +.|+++|++....-.+|+++..
T Consensus 399 Iemh~~rvdsa~aG~iig~Al~gv~~e~lerGMVl~~~ 436 (527)
T COG5258 399 IEMHHYRVDSAKAGSIIGIALKGVEKEELERGMVLSAG 436 (527)
T ss_pred EEEeeEEeccccCCcEEEEEecccCHHHHhcceEecCC
Confidence 9999998887753 6677788877666677777654
No 39
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.94 E-value=1e-25 Score=269.45 Aligned_cols=280 Identities=23% Similarity=0.235 Sum_probs=184.3
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCcc---cccccCceeeeeeeeEeccccch-------hhhhh-hcc-cc-ccCCCCEE
Q 000728 794 SPICCIMGHVDTGKTKLLDCIRGTNV---QEGEAGGITQQIGATYFPAENIR-------ERTRE-LKA-NA-TLKVPGLL 860 (1326)
Q Consensus 794 ~piV~IlGhvdaGKTTLLd~L~~~~v---~~ge~gGITq~iga~~~~~~~~~-------~~~~~-v~~-~~-~~~~~~I~ 860 (1326)
..+|+|+||+|||||||+++|.+... .....+|+|.+++...+.+.... ..+.. +.. .. ......|+
T Consensus 9 ~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 88 (411)
T PRK04000 9 EVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLRRVS 88 (411)
T ss_pred cEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccccEEE
Confidence 45699999999999999999976422 22335789998876554442100 00000 000 00 00024699
Q ss_pred EEeCCCCcchhhhhhhccCccceeEEeeccccCC-chhHHHHHHHHHhcCC-cEEEEEeccccccCcccCCCchHHHHHH
Q 000728 861 VIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGL-EPQTIESLNLLKMRNT-EFIVALNKVDRLYGWKTCRNAPIVKAIK 938 (1326)
Q Consensus 861 IIDTPGhe~F~~lr~rg~~~aDiaILVVDa~~Gv-~~QT~E~l~~l~~~~v-P~IVvINKiD~~~~w~~~~~a~~~~~L~ 938 (1326)
|||||||..|...+.+++..+|++|||||+.+++ .++|.++|.++...++ |+|||+||+|++.. ..
T Consensus 89 liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~~i~~iiVVlNK~Dl~~~-------~~----- 156 (411)
T PRK04000 89 FVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDIIGIKNIVIVQNKIDLVSK-------ER----- 156 (411)
T ss_pred EEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEEeeccccc-------hh-----
Confidence 9999999999999999999999999999999998 8999999999888876 69999999998621 00
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHHHHHhHhhhhhcccccc
Q 000728 939 QQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQ 1018 (1326)
Q Consensus 939 ~q~~~~~~e~~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~q~~l~e~l~~~~~~~ 1018 (1326)
+...+..+...+..+ +...+++|++||++|.||+.|+.+|..+++... -....+++
T Consensus 157 ---------~~~~~~~i~~~l~~~------------~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~~~---~~~~~~~r 212 (411)
T PRK04000 157 ---------ALENYEQIKEFVKGT------------VAENAPIIPVSALHKVNIDALIEAIEEEIPTPE---RDLDKPPR 212 (411)
T ss_pred ---------HHHHHHHHHHHhccc------------cCCCCeEEEEECCCCcCHHHHHHHHHHhCCCCC---CCCCCCce
Confidence 001112222222111 012468999999999999999999887654321 12356789
Q ss_pred eeEEEEEEEeC--------ceeEEEEEEEeeEecCCCEEEEccCCCceeeeeeeccCCCCCceeeecceeeccccccccc
Q 000728 1019 CTVLEVKVIEG--------HGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAAQ 1090 (1326)
Q Consensus 1019 ~~VlEvk~~~G--------~Gtvi~giV~~G~Lr~GD~IVl~g~~g~~~~~IR~Ll~p~p~~e~rVk~~~~~~k~v~aa~ 1090 (1326)
++|..+|.+.| +|+++.|+|.+|+|++||.|.+++........+-. + .| ...+|+++++|+..+..|.
T Consensus 213 ~~I~~~f~v~~~g~~~~~~~G~Vv~G~v~~G~l~~gd~v~i~P~~~~~~~~~~~-~--~~-~~~~VksI~~~~~~~~~a~ 288 (411)
T PRK04000 213 MYVARSFDVNKPGTPPEKLKGGVIGGSLIQGVLKVGDEIEIRPGIKVEEGGKTK-W--EP-ITTKIVSLRAGGEKVEEAR 288 (411)
T ss_pred EEEEeeeeecCCCccccCCcceEEEEEEEeCEEecCCEEEEcCCcceecccccc-c--cc-ceEEEeEEEECCEECCEEc
Confidence 99999998876 46699999999999999999987643100010000 0 01 1357788888887766543
Q ss_pred ---ceeeecc---ccccccCCCceEEcCC
Q 000728 1091 ---GIKITAQ---GLEHAIAGTGLYVVGP 1113 (1326)
Q Consensus 1091 ---gv~i~~~---gl~~~~aG~~~~v~~~ 1113 (1326)
.+.|++. +++......+.+++.+
T Consensus 289 ~G~~v~i~l~~~~~i~~~~i~~G~vl~~~ 317 (411)
T PRK04000 289 PGGLVGVGTKLDPSLTKADALAGSVAGKP 317 (411)
T ss_pred CCCEEEEEeccCCCCCHHHccCccEEEcC
Confidence 2444443 3333333345555544
No 40
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=5.2e-25 Score=273.79 Aligned_cols=288 Identities=25% Similarity=0.303 Sum_probs=193.1
Q ss_pred ccCCCCCEEEEEeCCCCCHHHHHHHHHcCc--------cccc----------ccCceeeeeeeeEeccccchhhhhhhcc
Q 000728 789 EENLRSPICCIMGHVDTGKTKLLDCIRGTN--------VQEG----------EAGGITQQIGATYFPAENIRERTRELKA 850 (1326)
Q Consensus 789 ~~~~R~piV~IlGhvdaGKTTLLd~L~~~~--------v~~g----------e~gGITq~iga~~~~~~~~~~~~~~v~~ 850 (1326)
..++|| |+|+||+|||||||+++|+... +..| ..+|||.+..++++.|..
T Consensus 7 ~~~~RN--igI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~---------- 74 (697)
T COG0480 7 LERIRN--IGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKG---------- 74 (697)
T ss_pred cccceE--EEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcC----------
Confidence 567888 9999999999999999998422 1111 135666666666665542
Q ss_pred ccccCCCCEEEEeCCCCcchhhhhhhccCccceeEEeeccccCCchhHHHHHHHHHhcCCcEEEEEeccccccCcccCCC
Q 000728 851 NATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRN 930 (1326)
Q Consensus 851 ~~~~~~~~I~IIDTPGhe~F~~lr~rg~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~vP~IVvINKiD~~~~w~~~~~ 930 (1326)
.+.|||||||||.+|+..+.|.++.||++|+|||+..|+++||...|+++...++|.|+|+||||++.
T Consensus 75 -----~~~iNlIDTPGHVDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~~vp~i~fiNKmDR~~------- 142 (697)
T COG0480 75 -----DYRINLIDTPGHVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKYGVPRILFVNKMDRLG------- 142 (697)
T ss_pred -----ceEEEEeCCCCccccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhhcCCCeEEEEECccccc-------
Confidence 14699999999999999999999999999999999999999999999999999999999999999973
Q ss_pred chHHHHHHHhhHHHHH-------------HHH-------------------------HH--------HHHHHHHHHHcCC
Q 000728 931 APIVKAIKQQNTDVQN-------------EFN-------------------------MR--------LVQIVTQLKEQGM 964 (1326)
Q Consensus 931 a~~~~~L~~q~~~~~~-------------e~~-------------------------~~--------l~~I~~~L~e~Gl 964 (1326)
++|...+......+.. .|. .. ...+...+.+...
T Consensus 143 a~~~~~~~~l~~~l~~~~~~v~~pIg~~~~f~g~idl~~~~~~~~~~~~~~~~~~ip~~~~~~~~e~r~~~~e~i~e~de 222 (697)
T COG0480 143 ADFYLVVEQLKERLGANPVPVQLPIGAEEEFEGVIDLVEMKAVAFGDGAKYEWIEIPADLKEIAEEAREKLLEALAEFDE 222 (697)
T ss_pred cChhhhHHHHHHHhCCCceeeeccccCccccCceeEhhhcCeEEEcCCcccceeeCCHHHHhHHHHHHHHHHHHHhhcCH
Confidence 3444333322211110 000 00 0000000111000
Q ss_pred -chhhhhcccC---------------CCcceeEEeCCCcCCCChhhHHHHHHHHHHHhHhhh-----------------h
Q 000728 965 -NTELYYKNKD---------------RGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEK-----------------L 1011 (1326)
Q Consensus 965 -~~e~~~~~~d---------------~g~~v~iVpvSA~tGeGI~eLl~~L~~~~q~~l~e~-----------------l 1011 (1326)
..+.|..+.+ -+..+|+++.||..+-|+..||+.++.+++.++... .
T Consensus 223 ~l~e~yl~g~e~~~~~i~~~i~~~~~~~~~~pvl~gsa~kn~gv~~lLdav~~~lPsP~e~~~~~g~~~~~~~~~~~~~~ 302 (697)
T COG0480 223 ELMEKYLEGEEPTEEEIKKALRKGTIAGKIVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDVPPIKGDLDDEIEKAVLRKA 302 (697)
T ss_pred HHHHHHhcCCCccHHHHHHHHHHhhhccceeeEEeeecccCCcHHHHHHHHHHHCCChhhcccccccCCccccchhcccC
Confidence 0011111110 134789999999999999999999999987653221 1
Q ss_pred hcccccceeEEEEEEEeCceeEEEEEEEeeEecCCCEEEEccCCCceeeeeeeccCCCCCceeeecceeecccccccc-c
Q 000728 1012 TFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAA-Q 1090 (1326)
Q Consensus 1012 ~~~~~~~~~VlEvk~~~G~Gtvi~giV~~G~Lr~GD~IVl~g~~g~~~~~IR~Ll~p~p~~e~rVk~~~~~~k~v~aa-~ 1090 (1326)
....|+.+.|+.+.+.+..|....++|++|+|+.|+.|+..+.. ...+|-.|+.++.... .++..+ .
T Consensus 303 ~~e~p~~a~vfKi~~d~~~g~l~~~RvysGtl~~G~~v~n~~~~--~~erv~~l~~~~~~~~----------~~v~~~~A 370 (697)
T COG0480 303 SDEGPLSALVFKIMTDPFVGKLTFVRVYSGTLKSGSEVLNSTKG--KKERVGRLLLMHGNER----------EEVDEVPA 370 (697)
T ss_pred CCCCceEEEEEEeEecCCCCeEEEEEEeccEEcCCCEEEeCCCC--ccEEEEEEEEccCCce----------eecccccC
Confidence 12456788889988888889988899999999999988765443 1233333333332211 122222 3
Q ss_pred ceeeeccccccccCCCceEEcC
Q 000728 1091 GIKITAQGLEHAIAGTGLYVVG 1112 (1326)
Q Consensus 1091 gv~i~~~gl~~~~aG~~~~v~~ 1112 (1326)
|..+++.||..+..|+++...+
T Consensus 371 G~I~a~~Gl~~~~tGdTl~~~~ 392 (697)
T COG0480 371 GDIVALVGLKDATTGDTLCDEN 392 (697)
T ss_pred ccEEEEEcccccccCCeeecCC
Confidence 5556667888887787776444
No 41
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=6.1e-25 Score=259.22 Aligned_cols=227 Identities=26% Similarity=0.445 Sum_probs=171.2
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcC--cc-----------------------------cccccCceeeeeeeeEeccccc
Q 000728 793 RSPICCIMGHVDTGKTKLLDCIRGT--NV-----------------------------QEGEAGGITQQIGATYFPAENI 841 (1326)
Q Consensus 793 R~piV~IlGhvdaGKTTLLd~L~~~--~v-----------------------------~~ge~gGITq~iga~~~~~~~~ 841 (1326)
-...++|+||||+|||||+++|++. .+ ...+.+|+|.+++.++|...
T Consensus 176 ~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~-- 253 (603)
T KOG0458|consen 176 DHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESK-- 253 (603)
T ss_pred cceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecC--
Confidence 4456999999999999999999741 11 11223566666665555432
Q ss_pred hhhhhhhccccccCCCCEEEEeCCCCcchhhhhhhccCccceeEEeeccccC-------CchhHHHHHHHHHhcCC-cEE
Q 000728 842 RERTRELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHG-------LEPQTIESLNLLKMRNT-EFI 913 (1326)
Q Consensus 842 ~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~~lr~rg~~~aDiaILVVDa~~G-------v~~QT~E~l~~l~~~~v-P~I 913 (1326)
...++|||+|||-+|...+..|...+|++|||||++.| +..||++|..+++.+|+ .+|
T Consensus 254 --------------~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lgi~qli 319 (603)
T KOG0458|consen 254 --------------SKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLGISQLI 319 (603)
T ss_pred --------------ceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcCcceEE
Confidence 34699999999999999999999999999999999865 45799999999999996 699
Q ss_pred EEEeccccccCcccCCCchHHHHHHHhhHHHHHHHHHHHHHHHHHH-HHcCCchhhhhcccCCCcceeEEeCCCcCCCCh
Q 000728 914 VALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQL-KEQGMNTELYYKNKDRGETFNIVPTSAISGEGI 992 (1326)
Q Consensus 914 VvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~e~~~~l~~I~~~L-~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI 992 (1326)
|+|||||++ +|.+. +|......+...| ...||.. ..+.|||||+++|+|+
T Consensus 320 vaiNKmD~V-~Wsq~------------------RF~eIk~~l~~fL~~~~gf~e----------s~v~FIPiSGl~GeNL 370 (603)
T KOG0458|consen 320 VAINKMDLV-SWSQD------------------RFEEIKNKLSSFLKESCGFKE----------SSVKFIPISGLSGENL 370 (603)
T ss_pred EEeeccccc-CccHH------------------HHHHHHHHHHHHHHHhcCccc----------CCcceEecccccCCcc
Confidence 999999998 68653 3444444555566 4556542 4579999999999998
Q ss_pred hhH--HHHHHHHHH-HhHhhhhh--------cccccceeEEEEEEEeCceeEEEEEEEeeEecCCCEEEEccCCCceeee
Q 000728 993 PDL--LLLLVQWTQ-KTMVEKLT--------FRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTT 1061 (1326)
Q Consensus 993 ~eL--l~~L~~~~q-~~l~e~l~--------~~~~~~~~VlEvk~~~G~Gtvi~giV~~G~Lr~GD~IVl~g~~g~~~~~ 1061 (1326)
-.. ...+.+|+. ++++..+. +..||+++|++++...+.|.+++|.|..|.|+.|++|+++++. .-+.
T Consensus 371 ~k~~~~~~l~~WY~Gp~LL~~id~~~~p~~~~~kPl~ltIsdi~~~~~~~~~i~gkiesG~iq~gqkl~i~~s~--e~~~ 448 (603)
T KOG0458|consen 371 IKIEQENELSQWYKGPTLLSQIDSFKIPERPIDKPLRLTISDIYPLPSSGVSISGKIESGYIQPGQKLYIMTSR--EDAT 448 (603)
T ss_pred cccccchhhhhhhcCChHHHHHhhccCCCCcccCCeEEEhhheeecCCCeeEEEEEEeccccccCCEEEEecCc--ceEE
Confidence 654 223444443 44544442 2447999999999999999999999999999999999987643 2344
Q ss_pred eeecc
Q 000728 1062 IRALL 1066 (1326)
Q Consensus 1062 IR~Ll 1066 (1326)
|+.|.
T Consensus 449 vk~l~ 453 (603)
T KOG0458|consen 449 VKGLT 453 (603)
T ss_pred EEeee
Confidence 44443
No 42
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.93 E-value=9.2e-26 Score=242.17 Aligned_cols=165 Identities=39% Similarity=0.546 Sum_probs=125.6
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCcccc------------------cccCceeeeeeeeEeccccchhhhhhhccccccCC
Q 000728 795 PICCIMGHVDTGKTKLLDCIRGTNVQE------------------GEAGGITQQIGATYFPAENIRERTRELKANATLKV 856 (1326)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~~~v~~------------------ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~ 856 (1326)
++|+|+||+|||||||+++|++..... ...+|+|..++...+.. .+..
T Consensus 4 ~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~--------------~~~~ 69 (188)
T PF00009_consen 4 RNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEK--------------NENN 69 (188)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEB--------------TESS
T ss_pred EEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccc--------------cccc
Confidence 459999999999999999998543211 12356666666555540 1233
Q ss_pred CCEEEEeCCCCcchhhhhhhccCccceeEEeeccccCCchhHHHHHHHHHhcCCcEEEEEeccccccCcccCCCchHHHH
Q 000728 857 PGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKA 936 (1326)
Q Consensus 857 ~~I~IIDTPGhe~F~~lr~rg~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~vP~IVvINKiD~~~~w~~~~~a~~~~~ 936 (1326)
..|+|||||||.+|...+.+++..+|++|||||+.+|+++||.++|.++...++|+|||+||||++.
T Consensus 70 ~~i~~iDtPG~~~f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~~~p~ivvlNK~D~~~------------- 136 (188)
T PF00009_consen 70 RKITLIDTPGHEDFIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRELGIPIIVVLNKMDLIE------------- 136 (188)
T ss_dssp EEEEEEEESSSHHHHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHTT-SEEEEEETCTSSH-------------
T ss_pred cceeecccccccceeecccceecccccceeeeecccccccccccccccccccccceEEeeeeccchh-------------
Confidence 5699999999999999999999999999999999999999999999999999999999999999861
Q ss_pred HHHhhHHHHHHHHHHHHHHHHH-HHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHHHH
Q 000728 937 IKQQNTDVQNEFNMRLVQIVTQ-LKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1004 (1326)
Q Consensus 937 L~~q~~~~~~e~~~~l~~I~~~-L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~q 1004 (1326)
.++...+..+... +...++.. ...+|+||+||++|.||..|++.|..++|
T Consensus 137 ---------~~~~~~~~~~~~~l~~~~~~~~---------~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 137 ---------KELEEIIEEIKEKLLKEYGENG---------EEIVPVIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp ---------HHHHHHHHHHHHHHHHHTTSTT---------TSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred ---------hhHHHHHHHHHHHhccccccCc---------cccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 1122223333322 33333321 02689999999999999999999988765
No 43
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.93 E-value=2e-25 Score=249.26 Aligned_cols=225 Identities=23% Similarity=0.338 Sum_probs=169.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCcc---------------------------------cccccCceeeeeeeeEeccccch
Q 000728 796 ICCIMGHVDTGKTKLLDCIRGTNV---------------------------------QEGEAGGITQQIGATYFPAENIR 842 (1326)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~~~v---------------------------------~~ge~gGITq~iga~~~~~~~~~ 842 (1326)
.++.||+||.|||||+.+|++..- +.....|||+++..-||.+..
T Consensus 8 RfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT~K-- 85 (431)
T COG2895 8 RFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFSTEK-- 85 (431)
T ss_pred eEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccccc--
Confidence 489999999999999999985321 111236788888777776653
Q ss_pred hhhhhhccccccCCCCEEEEeCCCCcchhhhhhhccCccceeEEeeccccCCchhHHHHHHHHHhcCCc-EEEEEecccc
Q 000728 843 ERTRELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTE-FIVALNKVDR 921 (1326)
Q Consensus 843 ~~~~~v~~~~~~~~~~I~IIDTPGhe~F~~lr~rg~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~vP-~IVvINKiD~ 921 (1326)
+.+.|.|||||+.|+.+|..|.+.||++||+||+.+|+..||+.|.-++..++++ +||++||||+
T Consensus 86 --------------RkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLLGIrhvvvAVNKmDL 151 (431)
T COG2895 86 --------------RKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGVLEQTRRHSFIASLLGIRHVVVAVNKMDL 151 (431)
T ss_pred --------------ceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhhHHHhHHHHHHHHHhCCcEEEEEEeeecc
Confidence 3599999999999999999999999999999999999999999999999999975 8899999999
Q ss_pred ccCcccCCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHH
Q 000728 922 LYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1001 (1326)
Q Consensus 922 ~~~w~~~~~a~~~~~L~~q~~~~~~e~~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~ 1001 (1326)
+ +|++ ..|+.............|+. .+.+||+||+.|+||-.--..+-|
T Consensus 152 v-dy~e------------------~~F~~I~~dy~~fa~~L~~~------------~~~~IPiSAl~GDNV~~~s~~mpW 200 (431)
T COG2895 152 V-DYSE------------------EVFEAIVADYLAFAAQLGLK------------DVRFIPISALLGDNVVSKSENMPW 200 (431)
T ss_pred c-ccCH------------------HHHHHHHHHHHHHHHHcCCC------------cceEEechhccCCcccccccCCCc
Confidence 8 4432 23333333444445555543 358999999999999876666666
Q ss_pred HHHHhHhhhhhc--------ccccceeEEEEEEEeCceeEEEEEEEeeEecCCCEEEEccCCCceeeeeeeccCCC
Q 000728 1002 WTQKTMVEKLTF--------RNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPH 1069 (1326)
Q Consensus 1002 ~~q~~l~e~l~~--------~~~~~~~VlEvk~~~G~Gtvi~giV~~G~Lr~GD~IVl~g~~g~~~~~IR~Ll~p~ 1069 (1326)
+..+++++.|.. ..+|+++|..|..-.-.-.-..|+|.+|++++||.|++.+++ ..++|..+.++.
T Consensus 201 Y~GptLLe~LE~v~i~~~~~~~~~RfPVQ~V~Rp~~dfRGyaGtiasG~v~~Gd~vvvlPsG--~~s~V~~Ivt~d 274 (431)
T COG2895 201 YKGPTLLEILETVEIADDRSAKAFRFPVQYVNRPNLDFRGYAGTIASGSVKVGDEVVVLPSG--KTSRVKRIVTFD 274 (431)
T ss_pred ccCccHHHHHhhccccccccccceeeceEEecCCCCcccccceeeeccceecCCeEEEccCC--CeeeEEEEeccC
Confidence 666666665532 345888888875433222335688999999999999998875 345566665543
No 44
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.93 E-value=5e-25 Score=277.00 Aligned_cols=271 Identities=20% Similarity=0.233 Sum_probs=167.3
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCccccc-----------ccCceeeeeeeeEeccc---cchhhhhhhcc---ccccCCC
Q 000728 795 PICCIMGHVDTGKTKLLDCIRGTNVQEG-----------EAGGITQQIGATYFPAE---NIRERTRELKA---NATLKVP 857 (1326)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~~~v~~g-----------e~gGITq~iga~~~~~~---~~~~~~~~v~~---~~~~~~~ 857 (1326)
+.|+|+||+|||||||+++|++..-... ...|.|.+...+.+..+ ..+.+..++.. ...+...
T Consensus 25 ~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~~~~ 104 (632)
T PRK05506 25 LRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFATPKR 104 (632)
T ss_pred eEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEccCCc
Confidence 3499999999999999999986431100 01222211111111111 11111111111 1223455
Q ss_pred CEEEEeCCCCcchhhhhhhccCccceeEEeeccccCCchhHHHHHHHHHhcCC-cEEEEEeccccccCcccCCCchHHHH
Q 000728 858 GLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNT-EFIVALNKVDRLYGWKTCRNAPIVKA 936 (1326)
Q Consensus 858 ~I~IIDTPGhe~F~~lr~rg~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~v-P~IVvINKiD~~~~w~~~~~a~~~~~ 936 (1326)
.++|||||||..|...+..++..+|++|||||+..|+++||.+++.++...++ |+|||+||||++. |.. .
T Consensus 105 ~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~~~~~iivvvNK~D~~~-~~~----~---- 175 (632)
T PRK05506 105 KFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLLGIRHVVLAVNKMDLVD-YDQ----E---- 175 (632)
T ss_pred eEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHhCCCeEEEEEEeccccc-chh----H----
Confidence 79999999999999888889999999999999999999999999999988885 6888999999862 211 0
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHHHHHhHhhhh-----
Q 000728 937 IKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKL----- 1011 (1326)
Q Consensus 937 L~~q~~~~~~e~~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~q~~l~e~l----- 1011 (1326)
.+......+...+...++ ..+++|||||++|.||.++...+.|+....|.+.|
T Consensus 176 ----------~~~~i~~~i~~~~~~~~~------------~~~~iipiSA~~g~ni~~~~~~~~wy~g~tL~~~l~~~~~ 233 (632)
T PRK05506 176 ----------VFDEIVADYRAFAAKLGL------------HDVTFIPISALKGDNVVTRSARMPWYEGPSLLEHLETVEI 233 (632)
T ss_pred ----------HHHHHHHHHHHHHHHcCC------------CCccEEEEecccCCCccccccCCCcccHhHHHHHHhcCCC
Confidence 111112223333444443 24689999999999998643322221112222211
Q ss_pred ---hcccccceeEEEEEEEeCceeEEEEEEEeeEecCCCEEEEccCCCceeeeeeeccCCCCCceeeecceeeccccccc
Q 000728 1012 ---TFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKA 1088 (1326)
Q Consensus 1012 ---~~~~~~~~~VlEvk~~~G~Gtvi~giV~~G~Lr~GD~IVl~g~~g~~~~~IR~Ll~p~p~~e~rVk~~~~~~k~v~a 1088 (1326)
....|+++.|..++.....+..+.|.|.+|+|++||.|++++++ . .++|+++++|+..+..
T Consensus 234 ~~~~~~~p~r~~i~~v~~~~~~~~g~~G~v~~G~l~~gd~v~i~P~~--~--------------~~~VksI~~~~~~~~~ 297 (632)
T PRK05506 234 ASDRNLKDFRFPVQYVNRPNLDFRGFAGTVASGVVRPGDEVVVLPSG--K--------------TSRVKRIVTPDGDLDE 297 (632)
T ss_pred CCCcCCCCceeeEEEEEecCCCceEEEEEEecceeecCCEEEEcCCC--c--------------eEEEEEEEECCceeCE
Confidence 12456888888876532111226799999999999999887543 1 2456666777666554
Q ss_pred c---cceeeeccccccccCCCceEEcCCc
Q 000728 1089 A---QGIKITAQGLEHAIAGTGLYVVGPD 1114 (1326)
Q Consensus 1089 a---~gv~i~~~gl~~~~aG~~~~v~~~~ 1114 (1326)
+ ..+.|.+.+. .....|++++.++
T Consensus 298 a~aG~~v~i~l~~~--~~i~rG~vL~~~~ 324 (632)
T PRK05506 298 AFAGQAVTLTLADE--IDISRGDMLARAD 324 (632)
T ss_pred EcCCCeEEEEecCc--cccCCccEEecCC
Confidence 4 3355555432 2344566666654
No 45
>PRK00007 elongation factor G; Reviewed
Probab=99.92 E-value=6.5e-24 Score=269.00 Aligned_cols=240 Identities=24% Similarity=0.244 Sum_probs=166.7
Q ss_pred cccCCCCCEEEEEeCCCCCHHHHHHHHHcCcc---ccc---------------ccCceeeeeeeeEeccccchhhhhhhc
Q 000728 788 AEENLRSPICCIMGHVDTGKTKLLDCIRGTNV---QEG---------------EAGGITQQIGATYFPAENIRERTRELK 849 (1326)
Q Consensus 788 ~~~~~R~piV~IlGhvdaGKTTLLd~L~~~~v---~~g---------------e~gGITq~iga~~~~~~~~~~~~~~v~ 849 (1326)
.+.++|| |+|+||+|||||||+++|++..- ..+ ..+|||.+.....+.|
T Consensus 6 ~~~~Irn--i~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~----------- 72 (693)
T PRK00007 6 PLERYRN--IGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFW----------- 72 (693)
T ss_pred cccceeE--EEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEE-----------
Confidence 4567887 99999999999999999984211 000 2345555554444433
Q ss_pred cccccCCCCEEEEeCCCCcchhhhhhhccCccceeEEeeccccCCchhHHHHHHHHHhcCCcEEEEEeccccccCcccCC
Q 000728 850 ANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCR 929 (1326)
Q Consensus 850 ~~~~~~~~~I~IIDTPGhe~F~~lr~rg~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~vP~IVvINKiD~~~~w~~~~ 929 (1326)
..+.|+|||||||.+|...+.++++.+|++|||||+..|+++||..+|.++...++|+|||+||||+..
T Consensus 73 -----~~~~~~liDTPG~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~~~p~iv~vNK~D~~~------ 141 (693)
T PRK00007 73 -----KDHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKYKVPRIAFVNKMDRTG------ 141 (693)
T ss_pred -----CCeEEEEEeCCCcHHHHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCCCC------
Confidence 345699999999999999999999999999999999999999999999999999999999999999862
Q ss_pred CchHHHHHHHhhHHHHH-------------------------------------------------HHHHHHHHHHHHHH
Q 000728 930 NAPIVKAIKQQNTDVQN-------------------------------------------------EFNMRLVQIVTQLK 960 (1326)
Q Consensus 930 ~a~~~~~L~~q~~~~~~-------------------------------------------------e~~~~l~~I~~~L~ 960 (1326)
+++...+......+.. ........++..+.
T Consensus 142 -~~~~~~~~~i~~~l~~~~~~~~ipisa~~~f~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~ 220 (693)
T PRK00007 142 -ADFYRVVEQIKDRLGANPVPIQLPIGAEDDFKGVVDLVKMKAIIWNEADLGATFEYEEIPADLKDKAEEYREKLIEAAA 220 (693)
T ss_pred -CCHHHHHHHHHHHhCCCeeeEEecCccCCcceEEEEcceeeeeecccCCCCCcceEccCCHHHHHHHHHHHHHHHHHHH
Confidence 2222222221111000 00000011111111
Q ss_pred HcC-Cchhhhhccc---------------CCCcceeEEeCCCcCCCChhhHHHHHHHHHHHhHhh---------------
Q 000728 961 EQG-MNTELYYKNK---------------DRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVE--------------- 1009 (1326)
Q Consensus 961 e~G-l~~e~~~~~~---------------d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~q~~l~e--------------- 1009 (1326)
+.. -..+.|..+. -.+..+|++..||+++.||..||+.|+.+++.+...
T Consensus 221 e~dd~lle~yle~~~l~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~ 300 (693)
T PRK00007 221 EADEELMEKYLEGEELTEEEIKAALRKATIANEIVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDVPAIKGILPDGEEEEV 300 (693)
T ss_pred ccCHHHHHHHhCcCCCCHHHHHHHHHHHHhcCcEEEEEecccccCcCHHHHHHHHHHHCCChhhcccccccCCCccccce
Confidence 100 0000111110 124678999999999999999999999998765321
Q ss_pred --hhhcccccceeEEEEEEEeCceeEEEEEEEeeEecCCCEEEEc
Q 000728 1010 --KLTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVC 1052 (1326)
Q Consensus 1010 --~l~~~~~~~~~VlEvk~~~G~Gtvi~giV~~G~Lr~GD~IVl~ 1052 (1326)
..++..++.+.|+.+...+..|.+..++|++|+|+.||.|..+
T Consensus 301 ~~~~~~~~~l~a~VfK~~~d~~~G~ia~~RV~sGtl~~g~~v~~~ 345 (693)
T PRK00007 301 ERKASDDEPFSALAFKIMTDPFVGKLTFFRVYSGVLESGSYVLNS 345 (693)
T ss_pred eecCCCCCCeEEEEEEeeecCCCCcEEEEEEeeeEEcCCCEEEeC
Confidence 0123456788899988888889999999999999999998644
No 46
>PRK13351 elongation factor G; Reviewed
Probab=99.92 E-value=1.2e-23 Score=267.21 Aligned_cols=242 Identities=24% Similarity=0.282 Sum_probs=168.8
Q ss_pred ccCCCCCEEEEEeCCCCCHHHHHHHHHcCcccccc------------------cCceeeeeeeeEeccccchhhhhhhcc
Q 000728 789 EENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGE------------------AGGITQQIGATYFPAENIRERTRELKA 850 (1326)
Q Consensus 789 ~~~~R~piV~IlGhvdaGKTTLLd~L~~~~v~~ge------------------~gGITq~iga~~~~~~~~~~~~~~v~~ 850 (1326)
+.++|+ |+|+||+|||||||+++|+...-.... ..|+|.......+
T Consensus 5 ~~~irn--i~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~-------------- 68 (687)
T PRK13351 5 LMQIRN--IGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSC-------------- 68 (687)
T ss_pred cccccE--EEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEE--------------
Confidence 445777 999999999999999999853211000 1223322222222
Q ss_pred ccccCCCCEEEEeCCCCcchhhhhhhccCccceeEEeeccccCCchhHHHHHHHHHhcCCcEEEEEeccccccCcccCCC
Q 000728 851 NATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRN 930 (1326)
Q Consensus 851 ~~~~~~~~I~IIDTPGhe~F~~lr~rg~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~vP~IVvINKiD~~~~w~~~~~ 930 (1326)
.|....|+|||||||.+|..++.++++.+|++|||||+..++..+|..+|.++...++|+|||+||+|+. +
T Consensus 69 --~~~~~~i~liDtPG~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~-------~ 139 (687)
T PRK13351 69 --DWDNHRINLIDTPGHIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADRYGIPRLIFINKMDRV-------G 139 (687)
T ss_pred --EECCEEEEEEECCCcHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEECCCCC-------C
Confidence 3445569999999999999999999999999999999999999999999999999999999999999986 3
Q ss_pred chHHHHHHHhhHHHHH---------------------------------------------HHH----HHHHHHHHHHHH
Q 000728 931 APIVKAIKQQNTDVQN---------------------------------------------EFN----MRLVQIVTQLKE 961 (1326)
Q Consensus 931 a~~~~~L~~q~~~~~~---------------------------------------------e~~----~~l~~I~~~L~e 961 (1326)
+++...+......+.. .+. .....+...+.+
T Consensus 140 ~~~~~~~~~i~~~l~~~~~~~~~P~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~ 219 (687)
T PRK13351 140 ADLFKVLEDIEERFGKRPLPLQLPIGSEDGFEGVVDLITEPELHFSEGDGGSTVEEGPIPEELLEEVEEAREKLIEALAE 219 (687)
T ss_pred CCHHHHHHHHHHHHCCCeEEEEeccccCCceEEEEECccceEEecccCCCCCceEEccCCHHHHHHHHHHHHHHHHHHHh
Confidence 4444444432111000 000 001111111111
Q ss_pred cCC-chhhhhcccC---------------CCcceeEEeCCCcCCCChhhHHHHHHHHHHHhHhh---------------h
Q 000728 962 QGM-NTELYYKNKD---------------RGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVE---------------K 1010 (1326)
Q Consensus 962 ~Gl-~~e~~~~~~d---------------~g~~v~iVpvSA~tGeGI~eLl~~L~~~~q~~l~e---------------~ 1010 (1326)
..- ..+.|+.+.. .+..+|++.+||++|.||..||+.|+.+++.+... .
T Consensus 220 ~d~~lle~~l~~~~l~~~~l~~~~~~~~~~~~~~PV~~gSA~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~ 299 (687)
T PRK13351 220 FDDELLELYLEGEELSAEQLRAPLREGTRSGHLVPVLFGSALKNIGIEPLLDAVVDYLPSPLEVPPPRGSKDNGKPVKVD 299 (687)
T ss_pred cCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCEEEEEecccCcCccHHHHHHHHHHHCCChhhcccccccCCCCCceeec
Confidence 100 0011222111 24578999999999999999999999998766421 0
Q ss_pred hhcccccceeEEEEEEEeCceeEEEEEEEeeEecCCCEEEEccCC
Q 000728 1011 LTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQ 1055 (1326)
Q Consensus 1011 l~~~~~~~~~VlEvk~~~G~Gtvi~giV~~G~Lr~GD~IVl~g~~ 1055 (1326)
.++..++.+.|+.+...++.|.+..++|++|+|+.||.|.+++.+
T Consensus 300 ~~~~~pl~a~VfK~~~d~~~G~i~~~RV~sGtl~~g~~v~~~~~~ 344 (687)
T PRK13351 300 PDPEKPLLALVFKVQYDPYAGKLTYLRVYSGTLRAGSQLYNGTGG 344 (687)
T ss_pred CCCCCCeEEEEEEeeecCCCceEEEEEEeEEEEcCCCEEEeCCCC
Confidence 123456888999999999999999999999999999999877654
No 47
>PRK12739 elongation factor G; Reviewed
Probab=99.91 E-value=1e-23 Score=267.29 Aligned_cols=240 Identities=24% Similarity=0.252 Sum_probs=165.9
Q ss_pred ccCCCCCEEEEEeCCCCCHHHHHHHHHcCcc--------cc----------cccCceeeeeeeeEeccccchhhhhhhcc
Q 000728 789 EENLRSPICCIMGHVDTGKTKLLDCIRGTNV--------QE----------GEAGGITQQIGATYFPAENIRERTRELKA 850 (1326)
Q Consensus 789 ~~~~R~piV~IlGhvdaGKTTLLd~L~~~~v--------~~----------ge~gGITq~iga~~~~~~~~~~~~~~v~~ 850 (1326)
+..+|+ |+|+||+|||||||+++|++..- .. ...+|||.++...++.|
T Consensus 5 ~~~irn--i~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~------------ 70 (691)
T PRK12739 5 LEKTRN--IGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFW------------ 70 (691)
T ss_pred ccCeeE--EEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEE------------
Confidence 456777 99999999999999999975211 00 01345665555555444
Q ss_pred ccccCCCCEEEEeCCCCcchhhhhhhccCccceeEEeeccccCCchhHHHHHHHHHhcCCcEEEEEeccccccCcccCCC
Q 000728 851 NATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRN 930 (1326)
Q Consensus 851 ~~~~~~~~I~IIDTPGhe~F~~lr~rg~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~vP~IVvINKiD~~~~w~~~~~ 930 (1326)
....|+|||||||.+|...+.++++.+|++|||||+..|++.||..+|.++...++|+|||+||||+..
T Consensus 71 ----~~~~i~liDTPG~~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~~~p~iv~iNK~D~~~------- 139 (691)
T PRK12739 71 ----KGHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKYGVPRIVFVNKMDRIG------- 139 (691)
T ss_pred ----CCEEEEEEcCCCHHHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCC-------
Confidence 335699999999999999999999999999999999999999999999999999999999999999873
Q ss_pred chHHHHHHHhhHHHHH-------------------------------------------------HHHHHHHHHHHHHHH
Q 000728 931 APIVKAIKQQNTDVQN-------------------------------------------------EFNMRLVQIVTQLKE 961 (1326)
Q Consensus 931 a~~~~~L~~q~~~~~~-------------------------------------------------e~~~~l~~I~~~L~e 961 (1326)
+++...+......+.. ........++..+.+
T Consensus 140 ~~~~~~~~~i~~~l~~~~~~~~iPis~~~~f~g~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e 219 (691)
T PRK12739 140 ADFFRSVEQIKDRLGANAVPIQLPIGAEDDFKGVIDLIKMKAIIWDDETLGAKYEEEDIPADLKEKAEEYREKLIEAVAE 219 (691)
T ss_pred CCHHHHHHHHHHHhCCCceeEEecccccccceEEEEcchhhhhhccCCCCCCeeEEcCCCHHHHHHHHHHHHHHHHhhhh
Confidence 2222222211111000 000000111111110
Q ss_pred cC-Cchhhhhccc---------------CCCcceeEEeCCCcCCCChhhHHHHHHHHHHHhHhhh---------------
Q 000728 962 QG-MNTELYYKNK---------------DRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEK--------------- 1010 (1326)
Q Consensus 962 ~G-l~~e~~~~~~---------------d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~q~~l~e~--------------- 1010 (1326)
.. -..+.|..+. ..+..+|++..||.+|.||..||+.|+.+++.+....
T Consensus 220 ~dd~lle~yl~~~~~~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~ 299 (691)
T PRK12739 220 VDEELMEKYLEGEEITEEEIKAAIRKATINMEFFPVLCGSAFKNKGVQPLLDAVVDYLPSPLDVPAIKGINPDTEEEIER 299 (691)
T ss_pred cCHHHHHHHhccCCCCHHHHHHHHHHHHHcCCEEEEEeccccCCccHHHHHHHHHHHCCChhhccccccccCCCCcceee
Confidence 00 0000111111 1235689999999999999999999999887653210
Q ss_pred -hhcccccceeEEEEEEEeCceeEEEEEEEeeEecCCCEEEEcc
Q 000728 1011 -LTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCG 1053 (1326)
Q Consensus 1011 -l~~~~~~~~~VlEvk~~~G~Gtvi~giV~~G~Lr~GD~IVl~g 1053 (1326)
.++..++.+.|+.+...+..|.+..++|++|+|+.||.|+.+.
T Consensus 300 ~~~~~~pl~a~VfK~~~d~~~G~i~~~RV~sGtL~~g~~v~~~~ 343 (691)
T PRK12739 300 PASDDEPFAALAFKIMTDPFVGRLTFFRVYSGVLESGSYVLNTT 343 (691)
T ss_pred ccCCCCCeEEEEEEeeeCCCCCeEEEEEEeeeEEcCCCEEEeCC
Confidence 1234567888999888888999999999999999999886543
No 48
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.91 E-value=2.5e-23 Score=263.97 Aligned_cols=240 Identities=23% Similarity=0.234 Sum_probs=167.2
Q ss_pred cccCCCCCEEEEEeCCCCCHHHHHHHHHcCccc--------cc----------ccCceeeeeeeeEeccccchhhhhhhc
Q 000728 788 AEENLRSPICCIMGHVDTGKTKLLDCIRGTNVQ--------EG----------EAGGITQQIGATYFPAENIRERTRELK 849 (1326)
Q Consensus 788 ~~~~~R~piV~IlGhvdaGKTTLLd~L~~~~v~--------~g----------e~gGITq~iga~~~~~~~~~~~~~~v~ 849 (1326)
.+.++|| |+|+||+|||||||+++|++..-. .+ ..+|||.+.....+.|
T Consensus 6 ~~~~irn--i~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~----------- 72 (689)
T TIGR00484 6 DLNRFRN--IGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFW----------- 72 (689)
T ss_pred ccccccE--EEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEE-----------
Confidence 4567888 999999999999999999742211 00 1245555554444443
Q ss_pred cccccCCCCEEEEeCCCCcchhhhhhhccCccceeEEeeccccCCchhHHHHHHHHHhcCCcEEEEEeccccccCcccCC
Q 000728 850 ANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCR 929 (1326)
Q Consensus 850 ~~~~~~~~~I~IIDTPGhe~F~~lr~rg~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~vP~IVvINKiD~~~~w~~~~ 929 (1326)
+...|+|||||||.+|...+.++++.+|++|||||+..|++.||..+|.++...++|+|||+||||+..
T Consensus 73 -----~~~~i~liDTPG~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~------ 141 (689)
T TIGR00484 73 -----KGHRINIIDTPGHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANRYEVPRIAFVNKMDKTG------ 141 (689)
T ss_pred -----CCeEEEEEECCCCcchhHHHHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHHcCCCEEEEEECCCCCC------
Confidence 345699999999999999999999999999999999999999999999999999999999999999863
Q ss_pred CchHHHHHHHhhHHHH--------------------------------------------HHHH----HHHHHHHHHHHH
Q 000728 930 NAPIVKAIKQQNTDVQ--------------------------------------------NEFN----MRLVQIVTQLKE 961 (1326)
Q Consensus 930 ~a~~~~~L~~q~~~~~--------------------------------------------~e~~----~~l~~I~~~L~e 961 (1326)
+++...+......+. .++. .....++..+.+
T Consensus 142 -~~~~~~~~~i~~~l~~~~~~~~ipis~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e 220 (689)
T TIGR00484 142 -ANFLRVVNQIKQRLGANAVPIQLPIGAEDNFIGVIDLVEMKAYFFNGDKGTKAIEKEIPSDLLEQAKELRENLVEAVAE 220 (689)
T ss_pred -CCHHHHHHHHHHHhCCCceeEEeccccCCCceEEEECccceEEecccCCCceeeeccCCHHHHHHHHHHHHHHHHHHHh
Confidence 222222222111100 0000 000111111110
Q ss_pred c------------CCchhhhhc----ccCCCcceeEEeCCCcCCCChhhHHHHHHHHHHHhHhh----------------
Q 000728 962 Q------------GMNTELYYK----NKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVE---------------- 1009 (1326)
Q Consensus 962 ~------------Gl~~e~~~~----~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~q~~l~e---------------- 1009 (1326)
. .+..+.++. ....+..+|++..||.+|.||..||+.|+.+++.+...
T Consensus 221 ~dd~lle~yle~~~~~~~~l~~~l~~~~~~~~~~PV~~gSa~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~ 300 (689)
T TIGR00484 221 FDEELMEKYLEGEELTIEEIKNAIRKGVLNCEFFPVLCGSAFKNKGVQLLLDAVVDYLPSPTDVPAIKGIDPDTEKEIER 300 (689)
T ss_pred cCHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCEEEEEeccccCCccHHHHHHHHHHHCCCchhcccccccCCCCCceeee
Confidence 0 011111100 00124678999999999999999999999998765321
Q ss_pred hhhcccccceeEEEEEEEeCceeEEEEEEEeeEecCCCEEEEc
Q 000728 1010 KLTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVC 1052 (1326)
Q Consensus 1010 ~l~~~~~~~~~VlEvk~~~G~Gtvi~giV~~G~Lr~GD~IVl~ 1052 (1326)
...+..++.+.|+.+...+..|.+..++|++|+|+.||.|..+
T Consensus 301 ~~~~~~~l~a~VfK~~~d~~~G~i~~~RV~sGtL~~g~~v~~~ 343 (689)
T TIGR00484 301 KASDDEPFSALAFKVATDPFVGQLTFVRVYSGVLKSGSYVKNS 343 (689)
T ss_pred cCCCCCceEEEEEEeeecCCCCeEEEEEEEEeEEcCCCEEEeC
Confidence 1122456788999999999999999999999999999998754
No 49
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=1.5e-23 Score=232.13 Aligned_cols=242 Identities=25% Similarity=0.329 Sum_probs=178.9
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCc-------ccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCC
Q 000728 794 SPICCIMGHVDTGKTKLLDCIRGTN-------VQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPG 866 (1326)
Q Consensus 794 ~piV~IlGhvdaGKTTLLd~L~~~~-------v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPG 866 (1326)
|.+|+|+||+|+|||||..+|.... ...+..+|||.++|...+....... +... ..-.++|+|+||
T Consensus 7 n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~par----Lpq~---e~lq~tlvDCPG 79 (522)
T KOG0461|consen 7 NLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPAR----LPQG---EQLQFTLVDCPG 79 (522)
T ss_pred eeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccc----cCcc---ccceeEEEeCCC
Confidence 4679999999999999999997421 2344568999999987765432210 0000 012589999999
Q ss_pred CcchhhhhhhccCccceeEEeeccccCCchhHHHHHHHHHhcCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHH
Q 000728 867 HESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQN 946 (1326)
Q Consensus 867 he~F~~lr~rg~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~ 946 (1326)
|.+.......|+...|++|||||+..|.++||.++|-+........||||||+|.... ..-...
T Consensus 80 HasLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~c~klvvvinkid~lpE------~qr~sk---------- 143 (522)
T KOG0461|consen 80 HASLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELLCKKLVVVINKIDVLPE------NQRASK---------- 143 (522)
T ss_pred cHHHHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhhccceEEEEeccccccc------hhhhhH----------
Confidence 9999999999999999999999999999999999998887777789999999998731 110111
Q ss_pred HHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCC----CChhhHHHHHHHHHHHhHhhhhhcccccceeEE
Q 000728 947 EFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISG----EGIPDLLLLLVQWTQKTMVEKLTFRNELQCTVL 1022 (1326)
Q Consensus 947 e~~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tG----eGI~eLl~~L~~~~q~~l~e~l~~~~~~~~~Vl 1022 (1326)
+......+...|...+ ++++.|||++||..| ++|++|...|...+ ....-+...||-+.|.
T Consensus 144 -i~k~~kk~~KtLe~t~-----------f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~i---f~P~Rd~~gpflm~vD 208 (522)
T KOG0461|consen 144 -IEKSAKKVRKTLESTG-----------FDGNSPIVEVSAADGYFKEEMIQELKEALESRI---FEPKRDEEGPFLMAVD 208 (522)
T ss_pred -HHHHHHHHHHHHHhcC-----------cCCCCceeEEecCCCccchhHHHHHHHHHHHhh---cCCCcCCCCCeEEEee
Confidence 1111223333444333 467899999999999 67777766664432 2223356778888999
Q ss_pred EEEEEeCceeEEEEEEEeeEecCCCEEEEccCCCceeeeeeeccCCCCCceeeecceeecccccccc
Q 000728 1023 EVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAA 1089 (1326)
Q Consensus 1023 Evk~~~G~Gtvi~giV~~G~Lr~GD~IVl~g~~g~~~~~IR~Ll~p~p~~e~rVk~~~~~~k~v~aa 1089 (1326)
-.+.++|.|||++|.|.+|.|+.|+.|-+...+ ...+|++++++++.|..|
T Consensus 209 HCF~IKGQGTV~TGTvl~G~~~ln~~iE~PAL~----------------e~rkVKslqmf~~~vtsa 259 (522)
T KOG0461|consen 209 HCFAIKGQGTVLTGTVLRGVLRLNTEIEFPALN----------------EKRKVKSLQMFKQRVTSA 259 (522)
T ss_pred eeEEeccCceEEeeeEEEeEEecCcEEeecccc----------------hhhhhhhHHHHhhhhhhh
Confidence 999999999999999999999999988763221 234588888888887754
No 50
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.91 E-value=1.3e-23 Score=267.56 Aligned_cols=240 Identities=25% Similarity=0.277 Sum_probs=161.9
Q ss_pred cccCCCCCEEEEEeCCCCCHHHHHHHHHcCccc-cc---------------ccCceeeeeeeeEeccccchhhhhhhccc
Q 000728 788 AEENLRSPICCIMGHVDTGKTKLLDCIRGTNVQ-EG---------------EAGGITQQIGATYFPAENIRERTRELKAN 851 (1326)
Q Consensus 788 ~~~~~R~piV~IlGhvdaGKTTLLd~L~~~~v~-~g---------------e~gGITq~iga~~~~~~~~~~~~~~v~~~ 851 (1326)
.+.++|| |+|+||+|||||||+++|+...-. .. ..+|||.+.+...+.|..
T Consensus 16 ~~~~iRn--i~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~----------- 82 (731)
T PRK07560 16 NPEQIRN--IGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEY----------- 82 (731)
T ss_pred chhcccE--EEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEe-----------
Confidence 3567888 999999999999999999853211 00 012333333222222110
Q ss_pred cccCCCCEEEEeCCCCcchhhhhhhccCccceeEEeeccccCCchhHHHHHHHHHhcCCcEEEEEeccccccCcccCCCc
Q 000728 852 ATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNA 931 (1326)
Q Consensus 852 ~~~~~~~I~IIDTPGhe~F~~lr~rg~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~vP~IVvINKiD~~~~w~~~~~a 931 (1326)
......|+|||||||.+|...+.++++.+|++|||||+..|+++||..+|+++...++|+|||+||||+.. +
T Consensus 83 -~~~~~~i~liDtPG~~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~~~~~~iv~iNK~D~~~-------~ 154 (731)
T PRK07560 83 -EGKEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALRERVKPVLFINKVDRLI-------K 154 (731)
T ss_pred -cCCcEEEEEEcCCCccChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHHHcCCCeEEEEECchhhc-------c
Confidence 00234599999999999999999999999999999999999999999999998888999999999999862 2
Q ss_pred hHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhh--hhcccCCCcceeEEeCCCcCCCChh----------------
Q 000728 932 PIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTEL--YYKNKDRGETFNIVPTSAISGEGIP---------------- 993 (1326)
Q Consensus 932 ~~~~~L~~q~~~~~~e~~~~l~~I~~~L~e~Gl~~e~--~~~~~d~g~~v~iVpvSA~tGeGI~---------------- 993 (1326)
++...+. .++..|...+..+...+..+.- ..+ .|... .....+++.||+.|+|+.
T Consensus 155 ~~~~~~~----~~~~~~~~~~~e~~~~l~~~~~-~~~~~~~~~~--~~~~~v~~~sa~~~~~~~~~~~~~~~~~~~~l~e 227 (731)
T PRK07560 155 ELKLTPQ----EMQQRLLKIIKDVNKLIKGMAP-EEFKEKWKVD--VEDGTVAFGSALYNWAISVPMMQKTGIKFKDIID 227 (731)
T ss_pred cccCCHH----HHHHHHHHHHHHHHHHHHHhhh-hhhhcceeec--CCCCcEeeeecccccceeHHHHHHhCCCHHHHHH
Confidence 2222111 2223333323333222222210 011 01100 011246688999998886
Q ss_pred ------------------hHHHHHHHHHHHhHhhh----------------------hhcccccceeEEEEEEEeCceeE
Q 000728 994 ------------------DLLLLLVQWTQKTMVEK----------------------LTFRNELQCTVLEVKVIEGHGTT 1033 (1326)
Q Consensus 994 ------------------eLl~~L~~~~q~~l~e~----------------------l~~~~~~~~~VlEvk~~~G~Gtv 1033 (1326)
.||+.|+.+++.+.... .+...++.+.|+.+....+.|.+
T Consensus 228 ~~~~~~~~~l~~~~Pv~~~Lld~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~~a~VfK~~~d~~~G~v 307 (731)
T PRK07560 228 YYEKGKQKELAEKAPLHEVVLDMVVKHLPNPIEAQKYRIPKIWKGDLNSEVGKAMLNCDPNGPLVMMVTDIIVDPHAGEV 307 (731)
T ss_pred HHhcCCHHHHHhhccchhHHHHHHHHhCCChhhhhhhcccccccCCCCccccceeeccCCCCCEEEEEEeeEEcCCCCeE
Confidence 67888888776654210 12234677889999888999999
Q ss_pred EEEEEEeeEecCCCEEEEccCC
Q 000728 1034 IDVVLVNGVLHEGDQIVVCGLQ 1055 (1326)
Q Consensus 1034 i~giV~~G~Lr~GD~IVl~g~~ 1055 (1326)
+.++|++|+|+.||.|.+++..
T Consensus 308 a~~RV~sGtL~~Gd~v~~~~~~ 329 (731)
T PRK07560 308 ATGRVFSGTLRKGQEVYLVGAK 329 (731)
T ss_pred EEEEEEEeEEcCCCEEEEcCCC
Confidence 9999999999999999887654
No 51
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.91 E-value=4e-23 Score=253.03 Aligned_cols=297 Identities=19% Similarity=0.218 Sum_probs=182.2
Q ss_pred cCCCCCEEEEEeCCCCCHHHHHHHHHcCcccccccCceee--eeeeeEeccc-cchhhhhhhcc---ccccCCCCEEEEe
Q 000728 790 ENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQ--QIGATYFPAE-NIRERTRELKA---NATLKVPGLLVID 863 (1326)
Q Consensus 790 ~~~R~piV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq--~iga~~~~~~-~~~~~~~~v~~---~~~~~~~~I~IID 863 (1326)
..+|+ |+|+||+|||||||+++|+...-.....+.+.. +-..+...+. ..+.+..++.. ...|....|+|||
T Consensus 8 ~~~Rn--i~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliD 85 (526)
T PRK00741 8 AKRRT--FAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLD 85 (526)
T ss_pred hcCCE--EEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEE
Confidence 45777 999999999999999999853211111111110 0000101111 11222222222 2345556799999
Q ss_pred CCCCcchhhhhhhccCccceeEEeeccccCCchhHHHHHHHHHhcCCcEEEEEeccccccCcccCCCchHHHHHHHhhHH
Q 000728 864 TPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTD 943 (1326)
Q Consensus 864 TPGhe~F~~lr~rg~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~ 943 (1326)
||||.+|...+.++++.+|++|||||+..|+..+|..+|.++...++|+|||+||||+. ++++...+......
T Consensus 86 TPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~iPiiv~iNK~D~~-------~a~~~~~l~~i~~~ 158 (526)
T PRK00741 86 TPGHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRLRDTPIFTFINKLDRD-------GREPLELLDEIEEV 158 (526)
T ss_pred CCCchhhHHHHHHHHHHCCEEEEEEecCCCCCHHHHHHHHHHHhcCCCEEEEEECCccc-------ccCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999986 23333332221110
Q ss_pred HHHH-------------------------------------------------HHH-----HHHHHHHHH---HHcCCch
Q 000728 944 VQNE-------------------------------------------------FNM-----RLVQIVTQL---KEQGMNT 966 (1326)
Q Consensus 944 ~~~e-------------------------------------------------~~~-----~l~~I~~~L---~e~Gl~~ 966 (1326)
+... +.. .+..+...| ...+..
T Consensus 159 l~~~~~p~~~Pig~~~~f~Gvvdl~~~~~~~~~~~~~~~~~~~e~~~~~dd~lle~~l~~~~~~~l~~~lel~~~~~~~- 237 (526)
T PRK00741 159 LGIACAPITWPIGMGKRFKGVYDLYNDEVELYQPGEGHTIQEVEIIKGLDNPELDELLGEDLAEQLREELELVQGASNE- 237 (526)
T ss_pred hCCCCeeEEeccccCCceeEEEEeecceeeecccCCCCcceeeeeccCCCHHHHHHHhcccHHHHHHHHHHhhhhcccc-
Confidence 0000 000 000000000 000000
Q ss_pred hhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHHHHHhHhh-----hhhc-ccccceeEEEEEE---EeCceeEEEEE
Q 000728 967 ELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVE-----KLTF-RNELQCTVLEVKV---IEGHGTTIDVV 1037 (1326)
Q Consensus 967 e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~q~~l~e-----~l~~-~~~~~~~VlEvk~---~~G~Gtvi~gi 1037 (1326)
.....-.-|..+|+++.||++|.||..||+.|+.+++.+... .+.+ ..++.+.|+.+.. .+.+|.+..++
T Consensus 238 -~~~~~~~~~~~~PV~~GSA~~n~Gv~~LLd~i~~~~P~P~~~~~~~~~~~~~~~~~~~~VFK~~~~m~~~~~grlafvR 316 (526)
T PRK00741 238 -FDLEAFLAGELTPVFFGSALNNFGVQEFLDAFVEWAPAPQPRQTDEREVEPTEEKFSGFVFKIQANMDPKHRDRIAFVR 316 (526)
T ss_pred -hhHHHHhcCCeEEEEEeecccCcCHHHHHHHHHHHCCCCCcccccceeecCCCCceEEEEEEEEecCCCCcCceEEEEE
Confidence 000000125678999999999999999999999999765421 1112 2357888888763 34789999999
Q ss_pred EEeeEecCCCEEEEccCCCceeeeeeeccCCCCCceeeecceeeccccccc-ccceeeeccccccccCCCceE
Q 000728 1038 LVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKA-AQGIKITAQGLEHAIAGTGLY 1109 (1326)
Q Consensus 1038 V~~G~Lr~GD~IVl~g~~g~~~~~IR~Ll~p~p~~e~rVk~~~~~~k~v~a-a~gv~i~~~gl~~~~aG~~~~ 1109 (1326)
|.+|+|+.|+.|....++.. .+|..++..... ....|.. ..|..+.+.++.....|+++.
T Consensus 317 V~sG~l~~g~~v~~~~~~k~--~ri~~~~~~~g~----------~~~~v~~a~aGDIv~v~~l~~~~~GDTL~ 377 (526)
T PRK00741 317 VCSGKFEKGMKVRHVRTGKD--VRISNALTFMAQ----------DREHVEEAYAGDIIGLHNHGTIQIGDTFT 377 (526)
T ss_pred EeccEECCCCEEEeccCCce--EEecceEEEecC----------CceECceeCCCCEEEEECCCCCccCCCcc
Confidence 99999999999876543311 122221111000 0112332 356677778888888888875
No 52
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=1.2e-23 Score=247.18 Aligned_cols=187 Identities=24% Similarity=0.319 Sum_probs=148.1
Q ss_pred CCCCchhhhhhcccCCCCCccCCCccccccccCCCCCCCch--hhhhhccchhhhcCCCCcCCCCc------ccccCCCC
Q 000728 723 SEPEPLVKKEIKSAIPSPRDAAEKPAVAVKKAIPEQPLKSQ--DAVTRKKEPAAKSKEPEVDATPK------QAEENLRS 794 (1326)
Q Consensus 723 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~R~ 794 (1326)
.+.+.+++|++|+|||+++++||..+++.++++++||+.++ .+.+.+++....+..+.+.|... ..+..+|+
T Consensus 51 ~~~~~vvLhedK~yypsaeevYG~dVE~lvqeed~Qpl~~Pli~Pv~~~k~q~~~~~~p~T~y~~~yl~~l~~~p~~irn 130 (971)
T KOG0468|consen 51 EPQNAVVLHEDKKYYPSAEEVYGEDVETLVQEEDTQPLREPLIEPVRRLKFQIHERDVPETVYDLEYLAGLMDNPERIRN 130 (971)
T ss_pred cccceeeeccccccCcccccccCCcceeeeeccccCCcccccchhhhhhhhhhhhcccchhhhhHHHHHHhccCcceEEE
Confidence 45688999999999999999999999999999999999888 56666676666665555555433 35555666
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCccccccc-----------------CceeeeeeeeEeccccchhhhhhhccccccCCC
Q 000728 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEA-----------------GGITQQIGATYFPAENIRERTRELKANATLKVP 857 (1326)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~~~v~~ge~-----------------gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~ 857 (1326)
|+++||-.||||+|++.|....+..... +|+++.....++-.. +..-+.+
T Consensus 131 --V~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~-----------D~~~KS~ 197 (971)
T KOG0468|consen 131 --VGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLS-----------DSKGKSY 197 (971)
T ss_pred --EEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEe-----------cCcCcee
Confidence 9999999999999999998765543311 222222211111111 1122345
Q ss_pred CEEEEeCCCCcchhhhhhhccCccceeEEeeccccCCchhHHHHHHHHHhcCCcEEEEEeccccc
Q 000728 858 GLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRL 922 (1326)
Q Consensus 858 ~I~IIDTPGhe~F~~lr~rg~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~vP~IVvINKiD~~ 922 (1326)
-++|+|||||.+|+..+...++.+|++|||||+.+|++.+|...|+++...++|++|||||+|++
T Consensus 198 l~nilDTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq~~~~i~vviNKiDRL 262 (971)
T KOG0468|consen 198 LMNILDTPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQNRLPIVVVINKVDRL 262 (971)
T ss_pred eeeeecCCCcccchHHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHHhccCcEEEEEehhHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999986
No 53
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.90 E-value=1.9e-22 Score=247.22 Aligned_cols=295 Identities=17% Similarity=0.230 Sum_probs=181.4
Q ss_pred cCCCCCEEEEEeCCCCCHHHHHHHHHcCcccccccCceeee--eeeeEecccc-chhhhhhhcc---ccccCCCCEEEEe
Q 000728 790 ENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQ--IGATYFPAEN-IRERTRELKA---NATLKVPGLLVID 863 (1326)
Q Consensus 790 ~~~R~piV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~--iga~~~~~~~-~~~~~~~v~~---~~~~~~~~I~IID 863 (1326)
.++|+ |+|+||+|||||||+++|+...-.....+.+.-. ...+...+.. .+.+..++.. ...|....|+|||
T Consensus 9 ~~~Rn--iaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliD 86 (527)
T TIGR00503 9 DKRRT--FAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLD 86 (527)
T ss_pred ccCCE--EEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEE
Confidence 45676 9999999999999999997432111111111000 0001111111 1122222211 2345566799999
Q ss_pred CCCCcchhhhhhhccCccceeEEeeccccCCchhHHHHHHHHHhcCCcEEEEEeccccccCcccCCCchHHHHHHHhhHH
Q 000728 864 TPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTD 943 (1326)
Q Consensus 864 TPGhe~F~~lr~rg~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~ 943 (1326)
||||.+|...+.++++.+|++|||||+..|+..+|..+|..++..++|+|||+||||+.. +++...+......
T Consensus 87 TPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~~PiivviNKiD~~~-------~~~~~ll~~i~~~ 159 (527)
T TIGR00503 87 TPGHEDFSEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRLRDTPIFTFMNKLDRDI-------RDPLELLDEVENE 159 (527)
T ss_pred CCChhhHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECccccC-------CCHHHHHHHHHHH
Confidence 999999999888899999999999999999999999999999989999999999999852 2222222111100
Q ss_pred HHHH---------------------------H---------------------------HHHHHHHH---HHHHHc--CC
Q 000728 944 VQNE---------------------------F---------------------------NMRLVQIV---TQLKEQ--GM 964 (1326)
Q Consensus 944 ~~~e---------------------------~---------------------------~~~l~~I~---~~L~e~--Gl 964 (1326)
+... | ...+...+ ..+... .+
T Consensus 160 l~~~~~~~~~PIg~~~~f~gv~d~l~~~~~~y~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~le~~~~~~~~~ 239 (527)
T TIGR00503 160 LKINCAPITWPIGCGKLFKGVYHLLKDETYLYQSGTGGTIQAVRQVKGLNNPALDSAVGSDLAQQLRDELELVEGASNEF 239 (527)
T ss_pred hCCCCccEEEEecCCCceeEEEEcccCcceecCccCCCceeEeehhccCCChhhhhhhhHHHHHHHHHHHHHHhhhcccc
Confidence 0000 0 00000000 011110 00
Q ss_pred chhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHHHHHhHhhh-----hh-cccccceeEEEEEE--E-eCceeEEE
Q 000728 965 NTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEK-----LT-FRNELQCTVLEVKV--I-EGHGTTID 1035 (1326)
Q Consensus 965 ~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~q~~l~e~-----l~-~~~~~~~~VlEvk~--~-~G~Gtvi~ 1035 (1326)
....+ .-|..+|+++.||+++.||..||+.|+.+++.+.... +. ...++.+.|+.+.. . ..+|.+..
T Consensus 240 ~~~~~----~~~~~~PV~~GSA~~n~Gv~~LLd~i~~~~PsP~~~~~~~~~~~~~~~~~~~~VFK~~~~mdp~~~griaf 315 (527)
T TIGR00503 240 DLAAF----HGGEMTPVFFGTALGNFGVDHFLDGLLQWAPKPEARQSDTRTVEPTEEKFSGFVFKIQANMDPKHRDRVAF 315 (527)
T ss_pred CHHHH----hcCCeeEEEEeecccCccHHHHHHHHHHHCCCCccccCCceecCCCCCCeeEEEEEEEeccCcccCceEEE
Confidence 00111 1356789999999999999999999999997664211 11 13458888999876 5 47899999
Q ss_pred EEEEeeEecCCCEEEEccCCCceeeeeeeccCCCCCceeeecceeeccccccc-ccceeeeccccccccCCCceE
Q 000728 1036 VVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKA-AQGIKITAQGLEHAIAGTGLY 1109 (1326)
Q Consensus 1036 giV~~G~Lr~GD~IVl~g~~g~~~~~IR~Ll~p~p~~e~rVk~~~~~~k~v~a-a~gv~i~~~gl~~~~aG~~~~ 1109 (1326)
++|.+|+|+.|+.|.....+. ..+|..++...... ...|.. ..|-.+.+.++.....|+.+.
T Consensus 316 ~RV~sG~l~~g~~v~~~~~~k--~~ri~~~~~~~g~~----------~~~v~~a~aGDI~~~~~~~~~~~GDtl~ 378 (527)
T TIGR00503 316 MRVVSGKYEKGMKLKHVRTGK--DVVISDALTFMAGD----------REHVEEAYAGDIIGLHNHGTIQIGDTFT 378 (527)
T ss_pred EEEeeeEEcCCCEEEecCCCC--cEEecchhhhhcCC----------ceEcceeCCCCEEEEECCCCcccCCEec
Confidence 999999999999987654331 12333332221111 112222 346667777887777787764
No 54
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.89 E-value=5.7e-23 Score=222.48 Aligned_cols=154 Identities=29% Similarity=0.344 Sum_probs=118.4
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCccc----------------ccccCceeeeeeeeEeccccchhhhhhhccccccCCCC
Q 000728 795 PICCIMGHVDTGKTKLLDCIRGTNVQ----------------EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPG 858 (1326)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~~~v~----------------~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~ 858 (1326)
.+|+|+||+|||||||+++|++.... ....+|+|.+.....+.+ ....
T Consensus 3 ~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~----------------~~~~ 66 (195)
T cd01884 3 VNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYET----------------ANRH 66 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecC----------------CCeE
Confidence 46999999999999999999864211 112456666665544433 2345
Q ss_pred EEEEeCCCCcchhhhhhhccCccceeEEeeccccCCchhHHHHHHHHHhcCCc-EEEEEeccccccCcccCCCchHHHHH
Q 000728 859 LLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTE-FIVALNKVDRLYGWKTCRNAPIVKAI 937 (1326)
Q Consensus 859 I~IIDTPGhe~F~~lr~rg~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~vP-~IVvINKiD~~~~w~~~~~a~~~~~L 937 (1326)
|+|||||||..|...+.+++..+|++|||||+..|+++||.++|.++...++| +|||+||||++.. ...
T Consensus 67 i~~iDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~------~~~---- 136 (195)
T cd01884 67 YAHVDCPGHADYIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADMVDD------EEL---- 136 (195)
T ss_pred EEEEECcCHHHHHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCcEEEEEeCCCCCCc------HHH----
Confidence 99999999999999999999999999999999999999999999999999998 7899999998621 111
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhh
Q 000728 938 KQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPD 994 (1326)
Q Consensus 938 ~~q~~~~~~e~~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~e 994 (1326)
+......+...|...|++. ..+++||+||++|.|+.+
T Consensus 137 ----------~~~~~~~i~~~l~~~g~~~----------~~v~iipiSa~~g~n~~~ 173 (195)
T cd01884 137 ----------LELVEMEVRELLSKYGFDG----------DNTPIVRGSALKALEGDD 173 (195)
T ss_pred ----------HHHHHHHHHHHHHHhcccc----------cCCeEEEeeCccccCCCC
Confidence 1112235666677777642 358999999999999753
No 55
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=1.5e-22 Score=238.25 Aligned_cols=231 Identities=28% Similarity=0.386 Sum_probs=166.5
Q ss_pred cCCCCCEEEEEeCCCCCHHHHHHHHHcCc--------cc----------ccccCceeeeeeeeEeccccchhhhhhhccc
Q 000728 790 ENLRSPICCIMGHVDTGKTKLLDCIRGTN--------VQ----------EGEAGGITQQIGATYFPAENIRERTRELKAN 851 (1326)
Q Consensus 790 ~~~R~piV~IlGhvdaGKTTLLd~L~~~~--------v~----------~ge~gGITq~iga~~~~~~~~~~~~~~v~~~ 851 (1326)
..+|+ |+|+.|.|+|||||.+++++-. +. ....+|||.+.++++++|..
T Consensus 37 ~k~RN--Igi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~----------- 103 (721)
T KOG0465|consen 37 NKIRN--IGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRD----------- 103 (721)
T ss_pred hhhcc--cceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeecc-----------
Confidence 46788 9999999999999999987421 11 11247888888888888764
Q ss_pred cccCCCCEEEEeCCCCcchhhhhhhccCccceeEEeeccccCCchhHHHHHHHHHhcCCcEEEEEeccccccCcccCCCc
Q 000728 852 ATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNA 931 (1326)
Q Consensus 852 ~~~~~~~I~IIDTPGhe~F~~lr~rg~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~vP~IVvINKiD~~~~w~~~~~a 931 (1326)
+.|+|||||||.+|+-.+.|.++..|++|+|+|+..|++.||...|++++.+++|.|++|||||+.+ +
T Consensus 104 -----~~iNiIDTPGHvDFT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~ry~vP~i~FiNKmDRmG-------a 171 (721)
T KOG0465|consen 104 -----YRINIIDTPGHVDFTFEVERALRVLDGAVLVLDAVAGVESQTETVWRQMKRYNVPRICFINKMDRMG-------A 171 (721)
T ss_pred -----ceeEEecCCCceeEEEEehhhhhhccCeEEEEEcccceehhhHHHHHHHHhcCCCeEEEEehhhhcC-------C
Confidence 4599999999999999999999999999999999999999999999999999999999999999974 3
Q ss_pred hHHHHHHHhhH------------------------------------------------HH-------HHHHHHHHHHHH
Q 000728 932 PIVKAIKQQNT------------------------------------------------DV-------QNEFNMRLVQIV 956 (1326)
Q Consensus 932 ~~~~~L~~q~~------------------------------------------------~~-------~~e~~~~l~~I~ 956 (1326)
++..+|.+... ++ ++.+-+.+..+.
T Consensus 172 ~~~~~l~~i~~kl~~~~a~vqiPig~e~~f~GvvDlv~~kai~~~g~~g~~i~~~eIP~~l~~~~~e~R~~LIE~lad~D 251 (721)
T KOG0465|consen 172 SPFRTLNQIRTKLNHKPAVVQIPIGSESNFKGVVDLVNGKAIYWDGENGEIVRKDEIPEDLEELAEEKRQALIETLADVD 251 (721)
T ss_pred ChHHHHHHHHhhcCCchheeEccccccccchhHHhhhhceEEEEcCCCCceeEeccCCHHHHHHHHHHHHHHHHHHhhhh
Confidence 33333332221 11 111111122222
Q ss_pred HHHHHcCCchhhhhcccC---------------CCcceeEEeCCCcCCCChhhHHHHHHHHHHHhHhh---hhh------
Q 000728 957 TQLKEQGMNTELYYKNKD---------------RGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVE---KLT------ 1012 (1326)
Q Consensus 957 ~~L~e~Gl~~e~~~~~~d---------------~g~~v~iVpvSA~tGeGI~eLl~~L~~~~q~~l~e---~l~------ 1012 (1326)
..|. +.|.++.+ -+.++|++..||+.+.||.-||+.++.+++.+..- .+.
T Consensus 252 E~l~------e~fLee~~ps~~~l~~aIRr~Ti~r~fvPVl~GSAlKNkGVQPlLDAVvdYLPsP~Ev~n~a~~ke~~~~ 325 (721)
T KOG0465|consen 252 ETLA------EMFLEEEEPSAQQLKAAIRRATIKRSFVPVLCGSALKNKGVQPLLDAVVDYLPSPSEVENYALNKETNSK 325 (721)
T ss_pred HHHH------HHHhccCCCCHHHHHHHHHHHHhhcceeeEEechhhcccCcchHHHHHHHhCCChhhhcccccccCCCCc
Confidence 2221 12222221 24679999999999999999999999999754211 111
Q ss_pred --------c-ccccceeEEEEEEEeC-ceeEEEEEEEeeEecCCCEEEEcc
Q 000728 1013 --------F-RNELQCTVLEVKVIEG-HGTTIDVVLVNGVLHEGDQIVVCG 1053 (1326)
Q Consensus 1013 --------~-~~~~~~~VlEvk~~~G-~Gtvi~giV~~G~Lr~GD~IVl~g 1053 (1326)
. .+||-+..+. ...| .|...+++|++|+|+.||+|+-.-
T Consensus 326 ekv~l~~~~d~~Pfv~LAFK--le~g~fGqLTyvRvYqG~L~kG~~iyN~r 374 (721)
T KOG0465|consen 326 EKVTLSPSRDKDPFVALAFK--LEEGRFGQLTYVRVYQGTLSKGDTIYNVR 374 (721)
T ss_pred cceEeccCCCCCceeeeEEE--eeecCccceEEEEEeeeeecCCcEEEecC
Confidence 1 1144444433 3333 499999999999999999987543
No 56
>PRK12740 elongation factor G; Reviewed
Probab=99.89 E-value=1.5e-21 Score=247.57 Aligned_cols=233 Identities=25% Similarity=0.269 Sum_probs=158.7
Q ss_pred EeCCCCCHHHHHHHHHcCccc---cc---------------ccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEE
Q 000728 800 MGHVDTGKTKLLDCIRGTNVQ---EG---------------EAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLV 861 (1326)
Q Consensus 800 lGhvdaGKTTLLd~L~~~~v~---~g---------------e~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~I 861 (1326)
+||+|||||||+++|+..... .+ ..+|||.......+. |....|+|
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~----------------~~~~~i~l 64 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCE----------------WKGHKINL 64 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEE----------------ECCEEEEE
Confidence 699999999999999753211 00 113344333333332 34456999
Q ss_pred EeCCCCcchhhhhhhccCccceeEEeeccccCCchhHHHHHHHHHhcCCcEEEEEeccccccCcccCCCchHHHHHHHhh
Q 000728 862 IDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQN 941 (1326)
Q Consensus 862 IDTPGhe~F~~lr~rg~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~ 941 (1326)
||||||.+|...+.+++..+|++|||||+..++..++..+|..+...++|+|||+||+|+.. ..+...+....
T Consensus 65 iDtPG~~~~~~~~~~~l~~aD~vllvvd~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~-------~~~~~~~~~l~ 137 (668)
T PRK12740 65 IDTPGHVDFTGEVERALRVLDGAVVVVCAVGGVEPQTETVWRQAEKYGVPRIIFVNKMDRAG-------ADFFRVLAQLQ 137 (668)
T ss_pred EECCCcHHHHHHHHHHHHHhCeEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEECCCCCC-------CCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999863 22222222111
Q ss_pred HHHH----------------------------------------------HHHHHHHHHHHHHHHHcC-Cchhhhhccc-
Q 000728 942 TDVQ----------------------------------------------NEFNMRLVQIVTQLKEQG-MNTELYYKNK- 973 (1326)
Q Consensus 942 ~~~~----------------------------------------------~e~~~~l~~I~~~L~e~G-l~~e~~~~~~- 973 (1326)
..+. .........++..+.+.. -..+.|+.+.
T Consensus 138 ~~l~~~~~~~~~p~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~~le~~l~~~~ 217 (668)
T PRK12740 138 EKLGAPVVPLQLPIGEGDDFTGVVDLLSMKAYRYDEGGPSEEIEIPAELLDRAEEAREELLEALAEFDDELMEKYLEGEE 217 (668)
T ss_pred HHHCCCceeEEecccCCCCceEEEECccceEEEecCCCeeEEecCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHCCCC
Confidence 1000 000000011111111110 0000111110
Q ss_pred --------------CCCcceeEEeCCCcCCCChhhHHHHHHHHHHHhHhh--------------hhhcccccceeEEEEE
Q 000728 974 --------------DRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVE--------------KLTFRNELQCTVLEVK 1025 (1326)
Q Consensus 974 --------------d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~q~~l~e--------------~l~~~~~~~~~VlEvk 1025 (1326)
..+..+|++.+||++|.||..||+.|+.+++.+..- ..++..++.+.|+.+.
T Consensus 218 l~~~~~~~~~~~~~~~~~~~Pv~~gSA~~~~Gv~~LLd~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~l~a~v~k~~ 297 (668)
T PRK12740 218 LSEEEIKAGLRKATLAGEIVPVFCGSALKNKGVQRLLDAVVDYLPSPLEVPPVDGEDGEEGAELAPDPDGPLVALVFKTM 297 (668)
T ss_pred CCHHHHHHHHHHHHHcCCEEEEEeccccCCccHHHHHHHHHHHCCChhhcccccCCCCccccccccCCCCCeEEEEEEee
Confidence 124578999999999999999999999998765321 1233456788999999
Q ss_pred EEeCceeEEEEEEEeeEecCCCEEEEccCC
Q 000728 1026 VIEGHGTTIDVVLVNGVLHEGDQIVVCGLQ 1055 (1326)
Q Consensus 1026 ~~~G~Gtvi~giV~~G~Lr~GD~IVl~g~~ 1055 (1326)
..++.|.++.++|++|+|+.||.|.+++..
T Consensus 298 ~~~~~G~i~~~RV~sG~L~~g~~v~~~~~~ 327 (668)
T PRK12740 298 DDPFVGKLSLVRVYSGTLKKGDTLYNSGTG 327 (668)
T ss_pred ecCCCCcEEEEEEeeeEEcCCCEEEeCCCC
Confidence 989999999999999999999999877643
No 57
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.88 E-value=3.6e-22 Score=254.00 Aligned_cols=246 Identities=22% Similarity=0.233 Sum_probs=155.2
Q ss_pred ccCCCCCEEEEEeCCCCCHHHHHHHHHcCccc--c--------------cccCceeeeeeeeEeccccchhhhhhhcccc
Q 000728 789 EENLRSPICCIMGHVDTGKTKLLDCIRGTNVQ--E--------------GEAGGITQQIGATYFPAENIRERTRELKANA 852 (1326)
Q Consensus 789 ~~~~R~piV~IlGhvdaGKTTLLd~L~~~~v~--~--------------ge~gGITq~iga~~~~~~~~~~~~~~v~~~~ 852 (1326)
+..+|+ |+|+||+|||||||+++|+...-. . ...+|+|.+.....+.+ ..
T Consensus 16 ~~~irn--I~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~------------~~ 81 (720)
T TIGR00490 16 PKFIRN--IGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVH------------EY 81 (720)
T ss_pred cccccE--EEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEE------------ee
Confidence 456777 999999999999999999853210 0 00123333222211100 01
Q ss_pred ccCCCCEEEEeCCCCcchhhhhhhccCccceeEEeeccccCCchhHHHHHHHHHhcCCcEEEEEeccccccCcccCCCch
Q 000728 853 TLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAP 932 (1326)
Q Consensus 853 ~~~~~~I~IIDTPGhe~F~~lr~rg~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~vP~IVvINKiD~~~~w~~~~~a~ 932 (1326)
.+....|+|||||||.+|...+.++++.+|++|||||+..|+..+|..+|+++...++|+|||+||||+... +
T Consensus 82 ~~~~~~i~liDTPG~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~-------~ 154 (720)
T TIGR00490 82 EGNEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALKENVKPVLFINKVDRLIN-------E 154 (720)
T ss_pred cCCceEEEEEeCCCccccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHHHHHHcCCCEEEEEEChhcccc-------h
Confidence 234567999999999999999999999999999999999999999999999998899999999999999632 2
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhh---hhcccCCCcceeEEeCCCcCCCC------------------
Q 000728 933 IVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTEL---YYKNKDRGETFNIVPTSAISGEG------------------ 991 (1326)
Q Consensus 933 ~~~~L~~q~~~~~~e~~~~l~~I~~~L~e~Gl~~e~---~~~~~d~g~~v~iVpvSA~tGeG------------------ 991 (1326)
+...+ ..++..|...+..+...+.... .... +.... ....++++|++.+++
T Consensus 155 ~~~~~----~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~---~~~~~~f~s~~~~~~~~~~~~~~~~~~~~~l~~ 226 (720)
T TIGR00490 155 LKLTP----QELQERFIKIITEVNKLIKAMA-PEEFRDKWKVRV---EDGSVAFGSAYYNWAISVPSMKKTGIGFKDIYK 226 (720)
T ss_pred hcCCH----HHHHHHHhhhhHHHHhhhhccC-CHHHhhceEech---hhCCHHHHhhhhcccccchhHhhcCCCHHHHHH
Confidence 22222 2233344443333333332210 0000 00000 001122223333211
Q ss_pred ----------------hhhHHHHHHHHHHHhHhh------h----------------hhcccccceeEEEEEEEeCceeE
Q 000728 992 ----------------IPDLLLLLVQWTQKTMVE------K----------------LTFRNELQCTVLEVKVIEGHGTT 1033 (1326)
Q Consensus 992 ----------------I~eLl~~L~~~~q~~l~e------~----------------l~~~~~~~~~VlEvk~~~G~Gtv 1033 (1326)
+..||+.|+.+++.+..- . .+...++.+.|+.+...++.|++
T Consensus 227 ~~~~~~~~~~~~~~Pv~~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~G~i 306 (720)
T TIGR00490 227 YCKEDKQKELAKKSPLHQVVLDMVIRHLPSPIEAQKYRIPVIWKGDLNSEVGKAMLNCDPKGPLALMITKIVVDKHAGEV 306 (720)
T ss_pred HHHhccHHHHhhhhhHHHHHHHHHHHhCCChhhhhhhcccccccCCCCccchhhcccCCCCCCeEEEEEEEEecCCCcEE
Confidence 244566666665544310 0 01234578889999888999999
Q ss_pred EEEEEEeeEecCCCEEEEccCCCceeeeeeec
Q 000728 1034 IDVVLVNGVLHEGDQIVVCGLQGPIVTTIRAL 1065 (1326)
Q Consensus 1034 i~giV~~G~Lr~GD~IVl~g~~g~~~~~IR~L 1065 (1326)
+.++|++|+|+.||.|++++.+. ..+|+.|
T Consensus 307 a~~RV~sGtL~~G~~l~~~~~~~--~~kv~~l 336 (720)
T TIGR00490 307 AVGRLYSGTIRPGMEVYIVDRKA--KARIQQV 336 (720)
T ss_pred EEEEEEeCEEcCCCEEEEcCCCC--eeEeeEE
Confidence 99999999999999998876542 2344444
No 58
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.88 E-value=3.6e-22 Score=220.80 Aligned_cols=224 Identities=27% Similarity=0.308 Sum_probs=164.2
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCc---ccccccCceeeeeeeeEeccccchh----hhhh----hc-cccc-cCCCCEE
Q 000728 794 SPICCIMGHVDTGKTKLLDCIRGTN---VQEGEAGGITQQIGATYFPAENIRE----RTRE----LK-ANAT-LKVPGLL 860 (1326)
Q Consensus 794 ~piV~IlGhvdaGKTTLLd~L~~~~---v~~ge~gGITq~iga~~~~~~~~~~----~~~~----v~-~~~~-~~~~~I~ 860 (1326)
..+|+++||||||||||+.+|.+-. +.+.-.+|||..+|....++....+ .+.. +. +... --.+.+.
T Consensus 10 ~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~VS 89 (415)
T COG5257 10 EVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRRVS 89 (415)
T ss_pred ceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEEEE
Confidence 3469999999999999999998743 3334468999998864333211100 0000 00 0100 1124699
Q ss_pred EEeCCCCcchhhhhhhccCccceeEEeeccccC-CchhHHHHHHHHHhcCC-cEEEEEeccccccCcccCCCchHHHHHH
Q 000728 861 VIDTPGHESFTNLRSRGSGLCDIAILVVDIMHG-LEPQTIESLNLLKMRNT-EFIVALNKVDRLYGWKTCRNAPIVKAIK 938 (1326)
Q Consensus 861 IIDTPGhe~F~~lr~rg~~~aDiaILVVDa~~G-v~~QT~E~l~~l~~~~v-P~IVvINKiD~~~~w~~~~~a~~~~~L~ 938 (1326)
|+|.|||+-+...+.+|+...|++||||+++.. .+|||.+||..|.-.++ .+|||-||+|++.. ...
T Consensus 90 fVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIigik~iiIvQNKIDlV~~---------E~A-- 158 (415)
T COG5257 90 FVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIGIKNIIIVQNKIDLVSR---------ERA-- 158 (415)
T ss_pred EeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhccceEEEEecccceecH---------HHH--
Confidence 999999999999999999999999999999975 68999999998888885 68999999999831 111
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHHHHHhHhhhhhcccccc
Q 000728 939 QQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQ 1018 (1326)
Q Consensus 939 ~q~~~~~~e~~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~q~~l~e~l~~~~~~~ 1018 (1326)
.+.+.+|..++. | .+..+.|+||+||..+.||+-|++.|..+++.+.. +...+..
T Consensus 159 ----------lE~y~qIk~Fvk--G----------t~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP~r---d~~~~p~ 213 (415)
T COG5257 159 ----------LENYEQIKEFVK--G----------TVAENAPIIPISAQHKANIDALIEAIEKYIPTPER---DLDKPPR 213 (415)
T ss_pred ----------HHHHHHHHHHhc--c----------cccCCCceeeehhhhccCHHHHHHHHHHhCCCCcc---CCCCCce
Confidence 122344444442 1 23356799999999999999999999988876533 3556778
Q ss_pred eeEEEEEEEeC--------ceeEEEEEEEeeEecCCCEEEEcc
Q 000728 1019 CTVLEVKVIEG--------HGTTIDVVLVNGVLHEGDQIVVCG 1053 (1326)
Q Consensus 1019 ~~VlEvk~~~G--------~Gtvi~giV~~G~Lr~GD~IVl~g 1053 (1326)
+.|+.+|.+.- .|-|+.|.|.+|.|++||.|-+-+
T Consensus 214 m~v~RSFDVNkPGt~~~~L~GGViGGsl~~G~l~vGDEIEIrP 256 (415)
T COG5257 214 MYVARSFDVNKPGTPPEELKGGVIGGSLVQGVLRVGDEIEIRP 256 (415)
T ss_pred EEEEeecccCCCCCCHHHccCceecceeeeeeEecCCeEEecC
Confidence 89999987753 467888999999999999997653
No 59
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.88 E-value=7.4e-22 Score=205.51 Aligned_cols=165 Identities=55% Similarity=0.816 Sum_probs=128.1
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchhhhh
Q 000728 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1326)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~~lr 874 (1326)
|+|+|+|++++|||||+++|+...+.....+++|++++.+.+.+.. .....++|||||||..|..++
T Consensus 1 ~~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-------------~~~~~~~iiDtpG~~~~~~~~ 67 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEV-------------LKIPGITFIDTPGHEAFTNMR 67 (168)
T ss_pred CEEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEeccc-------------CCcceEEEEeCCCcHHHHHHH
Confidence 6899999999999999999998887777777889888766665431 012459999999999999999
Q ss_pred hhccCccceeEEeeccccCCchhHHHHHHHHHhcCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHHHHHHHHHH
Q 000728 875 SRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQ 954 (1326)
Q Consensus 875 ~rg~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~e~~~~l~~ 954 (1326)
..++..+|++|+|||++++...++..++..+...++|+|||+||+|+... .. ..
T Consensus 68 ~~~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~-------~~-------------------~~ 121 (168)
T cd01887 68 ARGASLTDIAILVVAADDGVMPQTIEAIKLAKAANVPFIVALNKIDKPNA-------NP-------------------ER 121 (168)
T ss_pred HHHHhhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEEceecccc-------cH-------------------HH
Confidence 99999999999999999999999999999998899999999999998621 00 00
Q ss_pred HHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHHH
Q 000728 955 IVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1326)
Q Consensus 955 I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1326)
+...+..++... + ..++..++++++||.+|.||.+|+.+|..+.
T Consensus 122 ~~~~~~~~~~~~--~---~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 165 (168)
T cd01887 122 VKNELSELGLQG--E---DEWGGDVQIVPTSAKTGEGIDDLLEAILLLA 165 (168)
T ss_pred HHHHHHHhhccc--c---ccccCcCcEEEeecccCCCHHHHHHHHHHhh
Confidence 111111111100 0 0123457899999999999999999998654
No 60
>PF11987 IF-2: Translation-initiation factor 2; InterPro: IPR023115 Initiation factor 2 (IF-2) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-2 promotes the GTP-dependent binding of the initiator tRNA to the small subunit of the ribosome. IF-2 is a protein of about 70 to 95 kDa that contains a central GTP-binding domain flanked by a highly variable N-terminal domain and a more conserved C-terminal domain. Some members of this group undergo protein self splicing that involves a post-translational excision of the intein followed by peptide ligation. The function of IF-2 in facilitating the proper binding of initiator methionyl-tRNA to the ribosomal P site appears to be universally conserved, with an IF-2 homologue (aIF-2) present in archaea bacteria [] Methanopyrus kandleri. This entry represents the domain 3 of IF-2. It consists of a alpha/beta/alpha structure with a core formed by a parallel beta-sheet of 4 strands [].; PDB: 1Z9B_A 1ZO1_I 3IZY_P 1G7R_A 1G7S_A 1G7T_A.
Probab=99.87 E-value=1.4e-22 Score=198.36 Aligned_cols=92 Identities=38% Similarity=0.601 Sum_probs=82.5
Q ss_pred ccCCceEEEcCCcccHHHHHHHhc---cCCceeeEEEeecCccccchHHHHhhhccccCcccEEEEeCCCCCHHHHHHHH
Q 000728 1137 KSGEGVCVQASTLGSLEALLEFLK---SDAVKIPVSGISIGPVHKKDVMRASVMLEKKKEYATILAFDVKVTPEARELAE 1213 (1326)
Q Consensus 1137 ~~~~gvivkadt~GSlEAl~~~L~---~~~v~i~v~~~~vG~V~~~DV~~A~~~~~~~~~~a~IlaFnvkv~~~a~~~A~ 1213 (1326)
....+|||||||+||||||+.+|. +++|+++|+++||||||++||++|++ .+|+||||||++++.++.+|+
T Consensus 14 ~~~~~iIiKaD~~GslEAi~~~l~~~~~~~v~i~Ii~~~VG~it~sDI~~A~~------~~a~Ii~FNv~~~~~~~~~a~ 87 (108)
T PF11987_consen 14 IKELNIIIKADVQGSLEAIKNSLEKLSNDEVKIKIIHAGVGPITESDIELASA------SNAIIIAFNVKVSPDAKDLAK 87 (108)
T ss_dssp SSCCEEEEEESSHHHHHHHHHHHCCTT-SSSCEEESEEEESSBHHHHHHHHHH------HC-EEEESSS-B-HHHHHCHH
T ss_pred CceeeEEEEECchhhHHHHHHHHHhcccccccccEEEeeCCCCCHHHHHHHHh------hCCEEEEeeCCCCHHHHHHHH
Confidence 356799999999999999999875 46899999999999999999999998 479999999999999999999
Q ss_pred HcCCeEEEcchHhHHHHHHHH
Q 000728 1214 ELGVKIFIADIIYHLFDQFTA 1234 (1326)
Q Consensus 1214 ~~gV~I~~~~IIY~L~d~~~~ 1234 (1326)
++||+|++|+|||||+|++++
T Consensus 88 ~~~V~I~~~~VIY~L~ddik~ 108 (108)
T PF11987_consen 88 KSGVKIRSHNVIYDLIDDIKK 108 (108)
T ss_dssp SSTSEEEESTTCCHHHHHHHH
T ss_pred HcCCEEEEeCHHHHHHHHhhC
Confidence 999999999999999999974
No 61
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.86 E-value=3.1e-21 Score=248.76 Aligned_cols=133 Identities=26% Similarity=0.336 Sum_probs=98.8
Q ss_pred cccCCCCCEEEEEeCCCCCHHHHHHHHHcCcc----------------cccccCceeeeeeeeEeccccchhhhhhhccc
Q 000728 788 AEENLRSPICCIMGHVDTGKTKLLDCIRGTNV----------------QEGEAGGITQQIGATYFPAENIRERTRELKAN 851 (1326)
Q Consensus 788 ~~~~~R~piV~IlGhvdaGKTTLLd~L~~~~v----------------~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~ 851 (1326)
++.++|| |||+||+|||||||+++|+...- .....+|||...+...+.|.............
T Consensus 15 ~~~~Irn--i~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~ 92 (843)
T PLN00116 15 KKHNIRN--MSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGE 92 (843)
T ss_pred CccCccE--EEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccc
Confidence 4667898 99999999999999999985431 11112455555444444432100000000000
Q ss_pred cccCCCCEEEEeCCCCcchhhhhhhccCccceeEEeeccccCCchhHHHHHHHHHhcCCcEEEEEeccccc
Q 000728 852 ATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRL 922 (1326)
Q Consensus 852 ~~~~~~~I~IIDTPGhe~F~~lr~rg~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~vP~IVvINKiD~~ 922 (1326)
.......|+|||||||.+|...+.++++.||++|||||+..|++.||..+|+++...++|+|||+||||++
T Consensus 93 ~~~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 93 RDGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
T ss_pred cCCCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHHHCCCCEEEEEECCccc
Confidence 01123458999999999999999999999999999999999999999999999999999999999999997
No 62
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=3.6e-21 Score=217.98 Aligned_cols=279 Identities=21% Similarity=0.337 Sum_probs=188.6
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCcccc-c----------ccCceeeeeeeeEecccc-chhhhhhhcc---ccccCC
Q 000728 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQE-G----------EAGGITQQIGATYFPAEN-IRERTRELKA---NATLKV 856 (1326)
Q Consensus 792 ~R~piV~IlGhvdaGKTTLLd~L~~~~v~~-g----------e~gGITq~iga~~~~~~~-~~~~~~~v~~---~~~~~~ 856 (1326)
-+..+++|+||+++||||+-+.|+...... . ...+-..-.-++++.+.. .+....++.. .+....
T Consensus 77 k~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte~ 156 (501)
T KOG0459|consen 77 KEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETEN 156 (501)
T ss_pred CCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEecc
Confidence 455569999999999999988875321100 0 000111111122222221 1221121111 111223
Q ss_pred CCEEEEeCCCCcchhhhhhhccCccceeEEeeccccC-----C--chhHHHHHHHHHhcCC-cEEEEEecccccc-Cccc
Q 000728 857 PGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHG-----L--EPQTIESLNLLKMRNT-EFIVALNKVDRLY-GWKT 927 (1326)
Q Consensus 857 ~~I~IIDTPGhe~F~~lr~rg~~~aDiaILVVDa~~G-----v--~~QT~E~l~~l~~~~v-P~IVvINKiD~~~-~w~~ 927 (1326)
..++|+|+|||..|...+..|++++|+++|||.+..| + ..||++|..+++..++ .+||+|||||-+. +|..
T Consensus 157 ~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPtvnWs~ 236 (501)
T KOG0459|consen 157 KRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSN 236 (501)
T ss_pred eeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCCccCcch
Confidence 4699999999999999999999999999999999754 2 3699999999999886 5899999999753 4543
Q ss_pred CCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHH-HHHHHHHHh
Q 000728 928 CRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLL-LLVQWTQKT 1006 (1326)
Q Consensus 928 ~~~a~~~~~L~~q~~~~~~e~~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~-~L~~~~q~~ 1006 (1326)
++|+.....+...|...|+|.. ..+.++|+|+++|.++.+... ...||....
T Consensus 237 ------------------eRy~E~~~k~~~fLr~~g~n~~---------~d~~f~p~sg~tG~~~k~~~~s~cpwy~gp~ 289 (501)
T KOG0459|consen 237 ------------------ERYEECKEKLQPFLRKLGFNPK---------PDKHFVPVSGLTGANVKDRTDSVCPWYKGPI 289 (501)
T ss_pred ------------------hhHHHHHHHHHHHHHHhcccCC---------CCceeeecccccccchhhcccccCCcccCCc
Confidence 3455556667777777787642 567899999999999998875 334444444
Q ss_pred Hhhhhh--------cccccceeEEEEEEEeCceeEEEEEEEeeEecCCCEEEEccCCCceeeeeeeccCCCCCceeeecc
Q 000728 1007 MVEKLT--------FRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKG 1078 (1326)
Q Consensus 1007 l~e~l~--------~~~~~~~~VlEvk~~~G~Gtvi~giV~~G~Lr~GD~IVl~g~~g~~~~~IR~Ll~p~p~~e~rVk~ 1078 (1326)
++..|+ .+.|++|+|.+-+ +.+||++.|.|.+|.++.|+.+++++... .+.|.+
T Consensus 290 fl~~ld~l~~~~R~~~GP~~~pI~~Ky--kdmGTvv~GKvEsGsi~kg~~lvvMPnk~----------------~veV~~ 351 (501)
T KOG0459|consen 290 FLEYLDELPHLERILNGPIRCPVANKY--KDMGTVVGGKVESGSIKKGQQLVVMPNKT----------------NVEVLG 351 (501)
T ss_pred cceehhccCcccccCCCCEEeehhhhc--cccceEEEEEecccceecCCeEEEccCCc----------------ceEEEE
Confidence 433332 2456888888843 46789999999999999999999876542 233445
Q ss_pred eeecccccc---cccceeeeccccccccCCCceEEcCCcc
Q 000728 1079 TYLHHKQIK---AAQGIKITAQGLEHAIAGTGLYVVGPDD 1115 (1326)
Q Consensus 1079 ~~~~~k~v~---aa~gv~i~~~gl~~~~aG~~~~v~~~~~ 1115 (1326)
||...-++. ++-.++|.+.|++...+-.+|+++.+..
T Consensus 352 I~~ddvE~~~~~pGenvk~rlkgieeedi~~GfiL~~~~n 391 (501)
T KOG0459|consen 352 IYSDDVETDRVAPGENVKLRLKGIEEEDISPGFILCSPNN 391 (501)
T ss_pred EecccceeeeccCCcceEEEecccchhhccCceEEecCCC
Confidence 554433333 3445899999998866666698887764
No 63
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=99.85 E-value=2.2e-21 Score=216.40 Aligned_cols=280 Identities=19% Similarity=0.295 Sum_probs=187.8
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCcccccc--------------cCceeeeeeeeEeccccchhhhhhhcc------cccc
Q 000728 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGE--------------AGGITQQIGATYFPAENIRERTRELKA------NATL 854 (1326)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~~~v~~ge--------------~gGITq~iga~~~~~~~~~~~~~~v~~------~~~~ 854 (1326)
..|+|+|.+|+||||||..|.+.....|. ..|-|..+|...+-++... ..++. ...|
T Consensus 134 ~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~G---NvVNKPD~Hg~~LdW 210 (641)
T KOG0463|consen 134 ARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHG---NVVNKPDPHGHNLDW 210 (641)
T ss_pred EEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeecccc---ccccCCCCCCCcccc
Confidence 34999999999999999999876554442 1344444444333322111 01111 1111
Q ss_pred C------CCCEEEEeCCCCcchhhhhhhcc--CccceeEEeeccccCCchhHHHHHHHHHhcCCcEEEEEeccccccCcc
Q 000728 855 K------VPGLLVIDTPGHESFTNLRSRGS--GLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWK 926 (1326)
Q Consensus 855 ~------~~~I~IIDTPGhe~F~~lr~rg~--~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~vP~IVvINKiD~~~~w~ 926 (1326)
. ..-|+|||..||+.|...+..|+ ...|+.+|+|-++.|+-..|.+||.++..+++|++||++|||+++
T Consensus 211 vkIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGIiGmTKEHLgLALaL~VPVfvVVTKIDMCP--- 287 (641)
T KOG0463|consen 211 VKICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGIIGMTKEHLGLALALHVPVFVVVTKIDMCP--- 287 (641)
T ss_pred eeeccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccceeccHHhhhhhhhhcCcEEEEEEeeccCc---
Confidence 1 12499999999999977766554 569999999999999999999999999999999999999999973
Q ss_pred cCCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchh-hhhc----------ccCCCcceeEEeCCCcCCCChhhH
Q 000728 927 TCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTE-LYYK----------NKDRGETFNIVPTSAISGEGIPDL 995 (1326)
Q Consensus 927 ~~~~a~~~~~L~~q~~~~~~e~~~~l~~I~~~L~e~Gl~~e-~~~~----------~~d~g~~v~iVpvSA~tGeGI~eL 995 (1326)
+++. ++.+.-+...|...|...- ...+ |......||||.+|.+||.|++-|
T Consensus 288 ----ANiL--------------qEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LL 349 (641)
T KOG0463|consen 288 ----ANIL--------------QETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLL 349 (641)
T ss_pred ----HHHH--------------HHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHH
Confidence 2221 1222333344444442110 0001 111235689999999999999766
Q ss_pred HHHHHHHHHHhHhhhhhcccccceeEEEEEEEeCceeEEEEEEEeeEecCCCEEEEccCC-CceeeeeeeccCCCCCcee
Q 000728 996 LLLLVQWTQKTMVEKLTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQ-GPIVTTIRALLTPHPMKEL 1074 (1326)
Q Consensus 996 l~~L~~~~q~~l~e~l~~~~~~~~~VlEvk~~~G~Gtvi~giV~~G~Lr~GD~IVl~g~~-g~~~~~IR~Ll~p~p~~e~ 1074 (1326)
..+|. ++. +...+..++|..+.|.++|+++|.||++.+.+.+|+|+.+|.+++++.. |.+ -.+
T Consensus 350 kmFLN-lls--~R~~~~E~~PAeFQIDD~Y~VpGVGTvvSGT~L~GtIrLND~LlLGPd~~G~F-------------~pI 413 (641)
T KOG0463|consen 350 KMFLN-LLS--LRRQLNENDPAEFQIDDIYWVPGVGTVVSGTLLSGTIRLNDILLLGPDSNGDF-------------MPI 413 (641)
T ss_pred HHHHh-hcC--cccccccCCCcceeecceEecCCcceEeecceeeeeEEeccEEEecCCCCCCe-------------eee
Confidence 55543 332 2234566788999999999999999999999999999999988876543 221 123
Q ss_pred eeccee---ecccccccccceeeeccccccccCCCceEEcCCc
Q 000728 1075 RVKGTY---LHHKQIKAAQGIKITAQGLEHAIAGTGLYVVGPD 1114 (1326)
Q Consensus 1075 rVk~~~---~~~k~v~aa~gv~i~~~gl~~~~aG~~~~v~~~~ 1114 (1326)
.|++|+ +....|+.++...+++.-+.......+|++|.+.
T Consensus 414 ~iKSIHRKRMpV~~VrcGQtASFALKKIkr~~vRKGMVmVsp~ 456 (641)
T KOG0463|consen 414 PIKSIHRKRMPVGIVRCGQTASFALKKIKRKDVRKGMVMVSPK 456 (641)
T ss_pred ehhhhhhccccceEEeccchhhhHhhhcchhhhhcceEEecCC
Confidence 344432 3445566666666666666666667777777654
No 64
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.85 E-value=1.5e-21 Score=213.21 Aligned_cols=173 Identities=25% Similarity=0.374 Sum_probs=121.7
Q ss_pred EEEEeCCCCCHHHHHHHHHcCccccc-------------------------------ccCceeeeeeeeEeccccchhhh
Q 000728 797 CCIMGHVDTGKTKLLDCIRGTNVQEG-------------------------------EAGGITQQIGATYFPAENIRERT 845 (1326)
Q Consensus 797 V~IlGhvdaGKTTLLd~L~~~~v~~g-------------------------------e~gGITq~iga~~~~~~~~~~~~ 845 (1326)
|+|+||+|||||||+++|++...... ..+|+|.++...++.
T Consensus 2 i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~-------- 73 (208)
T cd04166 2 FLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFS-------- 73 (208)
T ss_pred EEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEe--------
Confidence 89999999999999999985321110 013344433333322
Q ss_pred hhhccccccCCCCEEEEeCCCCcchhhhhhhccCccceeEEeeccccCCchhHHHHHHHHHhcCCc-EEEEEeccccccC
Q 000728 846 RELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTE-FIVALNKVDRLYG 924 (1326)
Q Consensus 846 ~~v~~~~~~~~~~I~IIDTPGhe~F~~lr~rg~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~vP-~IVvINKiD~~~~ 924 (1326)
+....|+|||||||..|...+..++..+|++|||||+..++..++..++.++...++| +|||+||||+..
T Consensus 74 --------~~~~~~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~- 144 (208)
T cd04166 74 --------TPKRKFIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSLLGIRHVVVAVNKMDLVD- 144 (208)
T ss_pred --------cCCceEEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCCcEEEEEEchhccc-
Confidence 3345699999999999988888899999999999999999999999888888887765 677999999862
Q ss_pred cccCCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHHHH
Q 000728 925 WKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1004 (1326)
Q Consensus 925 w~~~~~a~~~~~L~~q~~~~~~e~~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~q 1004 (1326)
|. .. .+......+...+...|+ ..+++|+|||++|.||.+....+.|+..
T Consensus 145 ~~----~~--------------~~~~i~~~~~~~~~~~~~------------~~~~ii~iSA~~g~ni~~~~~~~~w~~g 194 (208)
T cd04166 145 YS----EE--------------VFEEIVADYLAFAAKLGI------------EDITFIPISALDGDNVVSRSENMPWYSG 194 (208)
T ss_pred CC----HH--------------HHHHHHHHHHHHHHHcCC------------CCceEEEEeCCCCCCCccCCCCCCCCCC
Confidence 11 00 011111222233333332 2357999999999999988766666667
Q ss_pred HhHhhhhhcccc
Q 000728 1005 KTMVEKLTFRNE 1016 (1326)
Q Consensus 1005 ~~l~e~l~~~~~ 1016 (1326)
+++++.|....|
T Consensus 195 ~~~~~~~~~~~~ 206 (208)
T cd04166 195 PTLLEHLETVPI 206 (208)
T ss_pred CcHHHHHhcCCC
Confidence 778877765433
No 65
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.85 E-value=5.8e-21 Score=207.87 Aligned_cols=176 Identities=25% Similarity=0.264 Sum_probs=122.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCc---ccccccCceeeeeeeeEeccccchh-hhhhh--------ccc--------cccC
Q 000728 796 ICCIMGHVDTGKTKLLDCIRGTN---VQEGEAGGITQQIGATYFPAENIRE-RTREL--------KAN--------ATLK 855 (1326)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~~~---v~~ge~gGITq~iga~~~~~~~~~~-~~~~v--------~~~--------~~~~ 855 (1326)
+|+|+||+|||||||+.+|.+.. .......|+|..++...+.+..... ++... ... ....
T Consensus 2 ~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (203)
T cd01888 2 NIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETKL 81 (203)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCcccc
Confidence 59999999999999999998662 2333456788887777665531100 00000 000 0011
Q ss_pred CCCEEEEeCCCCcchhhhhhhccCccceeEEeeccccC-CchhHHHHHHHHHhcCC-cEEEEEeccccccCcccCCCchH
Q 000728 856 VPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHG-LEPQTIESLNLLKMRNT-EFIVALNKVDRLYGWKTCRNAPI 933 (1326)
Q Consensus 856 ~~~I~IIDTPGhe~F~~lr~rg~~~aDiaILVVDa~~G-v~~QT~E~l~~l~~~~v-P~IVvINKiD~~~~w~~~~~a~~ 933 (1326)
...|+|||||||..|...+.+++..+|++|||||+.++ +.+++.++|..+...++ |+|||+||+|+... ..+
T Consensus 82 ~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iiivvNK~Dl~~~------~~~ 155 (203)
T cd01888 82 VRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNKIDLVKE------EQA 155 (203)
T ss_pred ccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEEEEEchhccCH------HHH
Confidence 25699999999999999999999999999999999984 77899999988877775 69999999998621 111
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHHHH
Q 000728 934 VKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1004 (1326)
Q Consensus 934 ~~~L~~q~~~~~~e~~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~q 1004 (1326)
...+..+...+..+. ...+++|++||++|.||.+|+.+|...++
T Consensus 156 ---------------~~~~~~i~~~~~~~~------------~~~~~i~~vSA~~g~gi~~L~~~l~~~l~ 199 (203)
T cd01888 156 ---------------LENYEQIKKFVKGTI------------AENAPIIPISAQLKYNIDVLLEYIVKKIP 199 (203)
T ss_pred ---------------HHHHHHHHHHHhccc------------cCCCcEEEEeCCCCCCHHHHHHHHHHhCC
Confidence 111122222222111 12368999999999999999999876543
No 66
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.85 E-value=1.6e-20 Score=194.10 Aligned_cols=157 Identities=33% Similarity=0.463 Sum_probs=114.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCc---ccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchhh
Q 000728 796 ICCIMGHVDTGKTKLLDCIRGTN---VQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 872 (1326)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~~~---v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~~ 872 (1326)
+|+|+|++|+|||||+++|++.. +.....+++|..++...+.+.. ...++|||||||..|..
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~---------------~~~~~~~DtpG~~~~~~ 66 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS---------------GKRLGFIDVPGHEKFIK 66 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC---------------CcEEEEEECCChHHHHH
Confidence 69999999999999999998643 2222235677766554443320 13599999999999988
Q ss_pred hhhhccCccceeEEeeccccCCchhHHHHHHHHHhcCC-cEEEEEeccccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000728 873 LRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNT-EFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1326)
Q Consensus 873 lr~rg~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~v-P~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~e~~~~ 951 (1326)
.+..+++.+|++|||+|+++++.+++.+.+..+...+. |+|+|+||+|+... ..+ ...
T Consensus 67 ~~~~~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~------~~~---------------~~~ 125 (164)
T cd04171 67 NMLAGAGGIDLVLLVVAADEGIMPQTREHLEILELLGIKRGLVVLTKADLVDE------DWL---------------ELV 125 (164)
T ss_pred HHHhhhhcCCEEEEEEECCCCccHhHHHHHHHHHHhCCCcEEEEEECccccCH------HHH---------------HHH
Confidence 88888999999999999999988999888877776676 99999999998621 000 011
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHH
Q 000728 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLV 1000 (1326)
Q Consensus 952 l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~ 1000 (1326)
...+...+...++ ..++++++||++|.||.+|+..|.
T Consensus 126 ~~~~~~~~~~~~~------------~~~~~~~~Sa~~~~~v~~l~~~l~ 162 (164)
T cd04171 126 EEEIRELLAGTFL------------ADAPIFPVSAVTGEGIEELKEYLD 162 (164)
T ss_pred HHHHHHHHHhcCc------------CCCcEEEEeCCCCcCHHHHHHHHh
Confidence 1222223322211 236899999999999999998875
No 67
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.84 E-value=1.4e-20 Score=213.49 Aligned_cols=111 Identities=34% Similarity=0.332 Sum_probs=90.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCcccc------------------cccCceeeeeeeeEeccccchhhhhhhccccccCCC
Q 000728 796 ICCIMGHVDTGKTKLLDCIRGTNVQE------------------GEAGGITQQIGATYFPAENIRERTRELKANATLKVP 857 (1326)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~~~v~~------------------ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~ 857 (1326)
+|+|+||+|||||||+++|+...-.. ...+|||.+.....+. |...
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~----------------~~~~ 64 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCF----------------WKDH 64 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEE----------------ECCE
Confidence 38999999999999999998532111 1123444444333333 3445
Q ss_pred CEEEEeCCCCcchhhhhhhccCccceeEEeeccccCCchhHHHHHHHHHhcCCcEEEEEeccccc
Q 000728 858 GLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRL 922 (1326)
Q Consensus 858 ~I~IIDTPGhe~F~~lr~rg~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~vP~IVvINKiD~~ 922 (1326)
.|+|||||||.+|...+.++++.+|++|||||+..|++++|..+|.++...++|+|||+||+|+.
T Consensus 65 ~i~liDTPG~~df~~~~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~ 129 (270)
T cd01886 65 RINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRYNVPRIAFVNKMDRT 129 (270)
T ss_pred EEEEEECCCcHHHHHHHHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCC
Confidence 69999999999999999999999999999999999999999999999999999999999999986
No 68
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.84 E-value=9.8e-21 Score=209.30 Aligned_cols=184 Identities=23% Similarity=0.264 Sum_probs=122.3
Q ss_pred EEEEeCCCCCHHHHHHHHHcCcccccc--------------cCceeeeeeeeEeccccch-----hhhhhhc---ccccc
Q 000728 797 CCIMGHVDTGKTKLLDCIRGTNVQEGE--------------AGGITQQIGATYFPAENIR-----ERTRELK---ANATL 854 (1326)
Q Consensus 797 V~IlGhvdaGKTTLLd~L~~~~v~~ge--------------~gGITq~iga~~~~~~~~~-----~~~~~v~---~~~~~ 854 (1326)
|+|+||+++|||||+++|....+..+. ..|+|..+....+.+.... ....... .....
T Consensus 2 v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (224)
T cd04165 2 VAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICEK 81 (224)
T ss_pred EEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeeee
Confidence 789999999999999999865543322 1344433322222111100 0000000 00112
Q ss_pred CCCCEEEEeCCCCcchhhhhhhccC--ccceeEEeeccccCCchhHHHHHHHHHhcCCcEEEEEeccccccCcccCCCch
Q 000728 855 KVPGLLVIDTPGHESFTNLRSRGSG--LCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAP 932 (1326)
Q Consensus 855 ~~~~I~IIDTPGhe~F~~lr~rg~~--~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~vP~IVvINKiD~~~~w~~~~~a~ 932 (1326)
....++|||||||..|...+.+++. .+|++|||||+.+|+++++.+++.++...++|+|||+||+|+.. ..
T Consensus 82 ~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~~ip~ivvvNK~D~~~------~~- 154 (224)
T cd04165 82 SSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALNIPVFVVVTKIDLAP------AN- 154 (224)
T ss_pred CCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEECccccC------HH-
Confidence 3457999999999999988888875 79999999999999999999999999999999999999999862 11
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchh-----------hhhcccCCCcceeEEeCCCcCCCChhhHHHHHHH
Q 000728 933 IVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTE-----------LYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1001 (1326)
Q Consensus 933 ~~~~L~~q~~~~~~e~~~~l~~I~~~L~e~Gl~~e-----------~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~ 1001 (1326)
.+...+..+...|...|+... ....+..++..+|+|++||+||+||+.|+.+|..
T Consensus 155 --------------~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~ 220 (224)
T cd04165 155 --------------ILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL 220 (224)
T ss_pred --------------HHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence 111222233333333232210 1112334567789999999999999999888754
No 69
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.84 E-value=3.8e-21 Score=211.77 Aligned_cols=175 Identities=25% Similarity=0.365 Sum_probs=119.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCcccc-------------------------------cccCceeeeeeeeEeccccchhh
Q 000728 796 ICCIMGHVDTGKTKLLDCIRGTNVQE-------------------------------GEAGGITQQIGATYFPAENIRER 844 (1326)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~~~v~~-------------------------------ge~gGITq~iga~~~~~~~~~~~ 844 (1326)
+|+|+||+|||||||+++|+...-.. ...+|+|.++....+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~------- 73 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFE------- 73 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEe-------
Confidence 38999999999999999997431100 0123344444333332
Q ss_pred hhhhccccccCCCCEEEEeCCCCcchhhhhhhccCccceeEEeecccc-------CCchhHHHHHHHHHhcC-CcEEEEE
Q 000728 845 TRELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMH-------GLEPQTIESLNLLKMRN-TEFIVAL 916 (1326)
Q Consensus 845 ~~~v~~~~~~~~~~I~IIDTPGhe~F~~lr~rg~~~aDiaILVVDa~~-------Gv~~QT~E~l~~l~~~~-vP~IVvI 916 (1326)
+..+.|+|||||||.+|...+.++++.+|++|||||+.+ ++.+||.+++.++...+ .|+|||+
T Consensus 74 ---------~~~~~i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiivv 144 (219)
T cd01883 74 ---------TEKYRFTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAV 144 (219)
T ss_pred ---------eCCeEEEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHcCCCeEEEEE
Confidence 344579999999999999999999999999999999998 57789999998887777 5799999
Q ss_pred ecccccc-CcccCCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhH
Q 000728 917 NKVDRLY-GWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDL 995 (1326)
Q Consensus 917 NKiD~~~-~w~~~~~a~~~~~L~~q~~~~~~e~~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eL 995 (1326)
||||++. .|.. ..|...+..+...|...++. ...++||||||++|.||.+-
T Consensus 145 NK~Dl~~~~~~~------------------~~~~~i~~~l~~~l~~~~~~----------~~~~~ii~iSA~tg~gi~~~ 196 (219)
T cd01883 145 NKMDDVTVNWSE------------------ERYDEIKKELSPFLKKVGYN----------PKDVPFIPISGLTGDNLIEK 196 (219)
T ss_pred EccccccccccH------------------HHHHHHHHHHHHHHHHcCCC----------cCCceEEEeecCcCCCCCcC
Confidence 9999962 1110 01111222333334444432 13579999999999999855
Q ss_pred HHHHHHHHHHhHhhhhhcc
Q 000728 996 LLLLVQWTQKTMVEKLTFR 1014 (1326)
Q Consensus 996 l~~L~~~~q~~l~e~l~~~ 1014 (1326)
-..+.|+...++++.|.+.
T Consensus 197 ~~~~~w~~g~~l~~~l~~~ 215 (219)
T cd01883 197 SENMPWYKGPTLLEALDSL 215 (219)
T ss_pred CCCCCCccCCcHHHHHhCC
Confidence 4444444445666665543
No 70
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.84 E-value=1.6e-20 Score=202.06 Aligned_cols=180 Identities=26% Similarity=0.372 Sum_probs=122.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHcC-------cccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCc
Q 000728 796 ICCIMGHVDTGKTKLLDCIRGT-------NVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHE 868 (1326)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~~-------~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe 868 (1326)
+|+|+||+|||||||+++|+.. .......+|+|.+++...+.+...... ............++|||||||.
T Consensus 2 ~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~DtpG~~ 79 (192)
T cd01889 2 NVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHL--RELINPGEENLQITLVDCPGHA 79 (192)
T ss_pred eEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccc--cccccccccCceEEEEECCCcH
Confidence 5999999999999999999862 112233567888877665554311000 0000001224569999999999
Q ss_pred chhhhhhhccCccceeEEeeccccCCchhHHHHHHHHHhcCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHHHH
Q 000728 869 SFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEF 948 (1326)
Q Consensus 869 ~F~~lr~rg~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~e~ 948 (1326)
.|.....+++..+|++|||||+.++...++.+++.++...++|+|||+||+|+... ..+...+. .+..
T Consensus 80 ~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~------~~~~~~~~----~~~~-- 147 (192)
T cd01889 80 SLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEILCKKLIVVLNKIDLIPE------EERERKIE----KMKK-- 147 (192)
T ss_pred HHHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECcccCCH------HHHHHHHH----HHHH--
Confidence 98877778888999999999999999999988888777778999999999998621 11110110 0111
Q ss_pred HHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHHHHHh
Q 000728 949 NMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKT 1006 (1326)
Q Consensus 949 ~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~q~~ 1006 (1326)
.+...+...++ ..+++|++||++|.||.+|+..|...+..+
T Consensus 148 -----~l~~~~~~~~~------------~~~~vi~iSa~~g~gi~~L~~~l~~~~~~~ 188 (192)
T cd01889 148 -----KLQKTLEKTRF------------KNSPIIPVSAKPGGGEAELGKDLNNLIVLP 188 (192)
T ss_pred -----HHHHHHHhcCc------------CCCCEEEEeccCCCCHHHHHHHHHhccccc
Confidence 11111221111 236899999999999999999998776543
No 71
>PTZ00416 elongation factor 2; Provisional
Probab=99.84 E-value=3.2e-20 Score=239.06 Aligned_cols=127 Identities=26% Similarity=0.315 Sum_probs=97.6
Q ss_pred cccCCCCCEEEEEeCCCCCHHHHHHHHHcCccc----------------ccccCceeeeeeeeEeccccchhhhhhhccc
Q 000728 788 AEENLRSPICCIMGHVDTGKTKLLDCIRGTNVQ----------------EGEAGGITQQIGATYFPAENIRERTRELKAN 851 (1326)
Q Consensus 788 ~~~~~R~piV~IlGhvdaGKTTLLd~L~~~~v~----------------~ge~gGITq~iga~~~~~~~~~~~~~~v~~~ 851 (1326)
++..+|| |||+||+|||||||+++|++..-. ....+|||.+.+...+.|..... ..
T Consensus 15 ~~~~irn--i~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~------~~ 86 (836)
T PTZ00416 15 NPDQIRN--MSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLE------DG 86 (836)
T ss_pred CccCcCE--EEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccc------cc
Confidence 3567887 999999999999999999863210 11124555555444444331100 00
Q ss_pred cccCCCCEEEEeCCCCcchhhhhhhccCccceeEEeeccccCCchhHHHHHHHHHhcCCcEEEEEeccccc
Q 000728 852 ATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRL 922 (1326)
Q Consensus 852 ~~~~~~~I~IIDTPGhe~F~~lr~rg~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~vP~IVvINKiD~~ 922 (1326)
.....+.|+|||||||.+|...+.++++.+|++|||||+..|+++||..+|+++...++|+|||+||||++
T Consensus 87 ~~~~~~~i~liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 87 DDKQPFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALQERIRPVLFINKVDRA 157 (836)
T ss_pred cCCCceEEEEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHHHHHHHcCCCEEEEEEChhhh
Confidence 00113459999999999999999999999999999999999999999999999999999999999999996
No 72
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.84 E-value=2.2e-20 Score=208.21 Aligned_cols=196 Identities=27% Similarity=0.315 Sum_probs=127.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEecccc-chhhhhhhc---cccccCCCCEEEEeCCCCcchh
Q 000728 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAEN-IRERTRELK---ANATLKVPGLLVIDTPGHESFT 871 (1326)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~-~~~~~~~v~---~~~~~~~~~I~IIDTPGhe~F~ 871 (1326)
+|+|+||+|+|||||+++|++........+.+. -|.++..+.. .+.+..++. ....+....|+|||||||.+|.
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~--~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~ 78 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVD--KGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFI 78 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCcccccccc--CCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchH
Confidence 389999999999999999986432211111111 0111111110 011111111 1123445679999999999999
Q ss_pred hhhhhccCccceeEEeeccccCCchhHHHHHHHHHhcCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000728 872 NLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1326)
Q Consensus 872 ~lr~rg~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~e~~~~ 951 (1326)
..+.++++.+|++|||||+.+|+..+|..+|.++...++|+|||+||+|+. ++++...+... +..|...
T Consensus 79 ~~~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~~~P~iivvNK~D~~-------~a~~~~~~~~i----~~~~~~~ 147 (237)
T cd04168 79 AEVERSLSVLDGAILVISAVEGVQAQTRILWRLLRKLNIPTIIFVNKIDRA-------GADLEKVYQEI----KEKLSSD 147 (237)
T ss_pred HHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccc-------CCCHHHHHHHH----HHHHCCC
Confidence 999999999999999999999999999999999999999999999999986 34454444432 2222110
Q ss_pred -------------------HHHHHHHHHHcCC-chhhhhcccC---------------CCcceeEEeCCCcCCCChhhHH
Q 000728 952 -------------------LVQIVTQLKEQGM-NTELYYKNKD---------------RGETFNIVPTSAISGEGIPDLL 996 (1326)
Q Consensus 952 -------------------l~~I~~~L~e~Gl-~~e~~~~~~d---------------~g~~v~iVpvSA~tGeGI~eLl 996 (1326)
...++..+.+..= -.+.|+++.. .+..+|+++.||.++.||..||
T Consensus 148 ~~~~~~p~~~~~~~~~~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~~~~~~~Pv~~gsa~~~~Gv~~ll 227 (237)
T cd04168 148 IVPMQKVGLAPNICETNEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAKRKVFPVYHGSALKGIGIEELL 227 (237)
T ss_pred eEEEECCcEeeeeeeeeeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCeEEEEEccccCCcCHHHHH
Confidence 0111111111100 0112222221 3567999999999999999999
Q ss_pred HHHHHHHH
Q 000728 997 LLLVQWTQ 1004 (1326)
Q Consensus 997 ~~L~~~~q 1004 (1326)
+.|..+++
T Consensus 228 ~~~~~~~p 235 (237)
T cd04168 228 EGITKLFP 235 (237)
T ss_pred HHHHHhcC
Confidence 99988765
No 73
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.84 E-value=1.6e-20 Score=198.32 Aligned_cols=161 Identities=30% Similarity=0.388 Sum_probs=111.8
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCc--ccc-------------cccCceeeeeeeeEeccccchhhhhhhccccccCCC
Q 000728 793 RSPICCIMGHVDTGKTKLLDCIRGTN--VQE-------------GEAGGITQQIGATYFPAENIRERTRELKANATLKVP 857 (1326)
Q Consensus 793 R~piV~IlGhvdaGKTTLLd~L~~~~--v~~-------------ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~ 857 (1326)
|| |+|+||+|+|||||+++|++.. +.. ....|+|.....+.+.+... .....
T Consensus 1 rn--i~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~-----------~~~~~ 67 (179)
T cd01890 1 RN--FSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAK-----------DGQEY 67 (179)
T ss_pred Cc--EEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecC-----------CCCcE
Confidence 55 9999999999999999998642 110 01123333222222211100 01123
Q ss_pred CEEEEeCCCCcchhhhhhhccCccceeEEeeccccCCchhHHHHHHHHHhcCCcEEEEEeccccccCcccCCCchHHHHH
Q 000728 858 GLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAI 937 (1326)
Q Consensus 858 ~I~IIDTPGhe~F~~lr~rg~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~vP~IVvINKiD~~~~w~~~~~a~~~~~L 937 (1326)
.|+|||||||..|..++.+++..+|++|||||++++...++...|..+...++|+|||+||+|+... .....
T Consensus 68 ~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~-------~~~~~- 139 (179)
T cd01890 68 LLNLIDTPGHVDFSYEVSRSLAACEGALLLVDATQGVEAQTLANFYLALENNLEIIPVINKIDLPSA-------DPERV- 139 (179)
T ss_pred EEEEEECCCChhhHHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHHcCCCEEEEEECCCCCcC-------CHHHH-
Confidence 4889999999999999999999999999999999999999998888887788999999999998521 11000
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHHH
Q 000728 938 KQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1326)
Q Consensus 938 ~~q~~~~~~e~~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1326)
...+.. ..++ ....+|++||++|.||.+|+.+|...+
T Consensus 140 --------------~~~~~~---~~~~------------~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 140 --------------KQQIED---VLGL------------DPSEAILVSAKTGLGVEDLLEAIVERI 176 (179)
T ss_pred --------------HHHHHH---HhCC------------CcccEEEeeccCCCCHHHHHHHHHhhC
Confidence 011111 1122 113589999999999999999987654
No 74
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.83 E-value=1.7e-20 Score=206.88 Aligned_cols=120 Identities=33% Similarity=0.433 Sum_probs=90.4
Q ss_pred EEEEeCCCCCHHHHHHHHHcCcc--c--------------ccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEE
Q 000728 797 CCIMGHVDTGKTKLLDCIRGTNV--Q--------------EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLL 860 (1326)
Q Consensus 797 V~IlGhvdaGKTTLLd~L~~~~v--~--------------~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~ 860 (1326)
|+|+||+|||||||+++|+.... . ....+|||.......+.+...... ...-....|+
T Consensus 3 vaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~------~~~~~~~~i~ 76 (222)
T cd01885 3 ICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEED------KADGNEYLIN 76 (222)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCccc------ccCCCceEEE
Confidence 99999999999999999985421 1 011234444443332222210000 0000134699
Q ss_pred EEeCCCCcchhhhhhhccCccceeEEeeccccCCchhHHHHHHHHHhcCCcEEEEEeccccc
Q 000728 861 VIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRL 922 (1326)
Q Consensus 861 IIDTPGhe~F~~lr~rg~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~vP~IVvINKiD~~ 922 (1326)
|||||||.+|...+.++++.+|++|||||+..|+++||..+|+++...++|+|||+||||+.
T Consensus 77 iiDTPG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~~~p~ilviNKiD~~ 138 (222)
T cd01885 77 LIDSPGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALKERVKPVLVINKIDRL 138 (222)
T ss_pred EECCCCccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCcc
Confidence 99999999999999999999999999999999999999999999998899999999999986
No 75
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=99.83 E-value=5.1e-21 Score=215.26 Aligned_cols=290 Identities=24% Similarity=0.309 Sum_probs=190.7
Q ss_pred CcccccCCCCCEEEEEeCCCCCHHHHHHHHHc--------Cccccc----------ccCceeeeeeeeEeccccchhhhh
Q 000728 785 PKQAEENLRSPICCIMGHVDTGKTKLLDCIRG--------TNVQEG----------EAGGITQQIGATYFPAENIRERTR 846 (1326)
Q Consensus 785 ~~~~~~~~R~piV~IlGhvdaGKTTLLd~L~~--------~~v~~g----------e~gGITq~iga~~~~~~~~~~~~~ 846 (1326)
+.+....+|| |+||.|+|+||||...+|++ +.|..| ..+|||.+..+..|.|.
T Consensus 30 ~~p~~akirn--igiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwk------- 100 (753)
T KOG0464|consen 30 INPAIAKIRN--IGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWK------- 100 (753)
T ss_pred CCCchhhhhc--ceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccc-------
Confidence 3444556888 99999999999999999974 223333 24788888877777655
Q ss_pred hhccccccCCCCEEEEeCCCCcchhhhhhhccCccceeEEeeccccCCchhHHHHHHHHHhcCCcEEEEEeccccccCcc
Q 000728 847 ELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWK 926 (1326)
Q Consensus 847 ~v~~~~~~~~~~I~IIDTPGhe~F~~lr~rg~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~vP~IVvINKiD~~~~w~ 926 (1326)
++.|++||||||.+|+-.+.|+++..|++|.|+|++.|+++||+..|+++...++|.+++|||||.+.
T Consensus 101 ---------g~rinlidtpghvdf~leverclrvldgavav~dasagve~qtltvwrqadk~~ip~~~finkmdk~~--- 168 (753)
T KOG0464|consen 101 ---------GHRINLIDTPGHVDFRLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQADKFKIPAHCFINKMDKLA--- 168 (753)
T ss_pred ---------cceEeeecCCCcceEEEEHHHHHHHhcCeEEEEeccCCcccceeeeehhccccCCchhhhhhhhhhhh---
Confidence 45699999999999999999999999999999999999999999999999999999999999999752
Q ss_pred cCCCchHHHHHHHhhH-------------------------------------------------------HHHHHHHHH
Q 000728 927 TCRNAPIVKAIKQQNT-------------------------------------------------------DVQNEFNMR 951 (1326)
Q Consensus 927 ~~~~a~~~~~L~~q~~-------------------------------------------------------~~~~e~~~~ 951 (1326)
++|...+..... .+..++...
T Consensus 169 ----anfe~avdsi~ekl~ak~l~l~lpi~eak~fnkg~ldil~ke~l~~ncnsndgkd~e~~plle~ndpel~e~~ae~ 244 (753)
T KOG0464|consen 169 ----ANFENAVDSIEEKLGAKALKLQLPIGEAKGFNKGFLDILHKEKLLGNCNSNDGKDFENKPLLEKNDPELAEELAEA 244 (753)
T ss_pred ----hhhhhHHHHHHHHhCCceEEEEecccccccccchHHHHHHHhhccCCCCCCccccccCCcccccCCHHHHHHHHHH
Confidence 222222111110 000000000
Q ss_pred HHHHHHHHHHcC--Cc---hhhhhcccC----------------CCcceeEEeCCCcCCCChhhHHHHHHHHHHHhHhh-
Q 000728 952 LVQIVTQLKEQG--MN---TELYYKNKD----------------RGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVE- 1009 (1326)
Q Consensus 952 l~~I~~~L~e~G--l~---~e~~~~~~d----------------~g~~v~iVpvSA~tGeGI~eLl~~L~~~~q~~l~e- 1009 (1326)
...+..+++... |. .+.|..|.+ -...+|+...||+++.||.-|++.+..+++.+-..
T Consensus 245 knal~~qlad~~~dfad~~ldef~~n~d~i~a~elksai~~lt~aq~a~~i~cgsaiknkgiqplldavtmylpspeern 324 (753)
T KOG0464|consen 245 KNALCEQLADLDADFADKFLDEFDENFDKIDAEELKSAIHELTCAQKAAPILCGSAIKNKGIQPLLDAVTMYLPSPEERN 324 (753)
T ss_pred HHHHHHHHhhccHHHHHHHHHHhhccccccCHHHHHHHHHHHhhhhhhcceehhhhhcccCccchhhhhhhccCChhhcc
Confidence 001111111000 00 000001110 12357899999999999999999887777643222
Q ss_pred --hhh-cccccceeEEEEEEEeCceeEEEEEEEeeEecCCCEEEEccCCCceeeeeeeccCCCCCceeeecceeeccccc
Q 000728 1010 --KLT-FRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQI 1086 (1326)
Q Consensus 1010 --~l~-~~~~~~~~VlEvk~~~G~Gtvi~giV~~G~Lr~GD~IVl~g~~g~~~~~IR~Ll~p~p~~e~rVk~~~~~~k~v 1086 (1326)
.|. |.+.+.+..+.|-..+.+|+....+|++|+|+..-.|.- .+|-...+|-.|+.|-.-. |.+|
T Consensus 325 yeflqwykddlcalafkvlhdkqrg~l~fmriysgsi~~~~ai~n--in~~~se~~~kl~~pfade----------~~~i 392 (753)
T KOG0464|consen 325 YEFLQWYKDDLCALAFKVLHDKQRGPLSFMRIYSGSIHNNLAIFN--INGMCSEGILKLFLPFADE----------HREI 392 (753)
T ss_pred hHHHhhhhhhHHHHhhhhhcccccCceeEEEEecccccCceeeee--cccccccchHhhhccchhh----------hhhh
Confidence 222 355666666667778899999999999999998876643 3343444555666654211 1222
Q ss_pred cc--ccceeeeccccccccCCCceEEcC
Q 000728 1087 KA--AQGIKITAQGLEHAIAGTGLYVVG 1112 (1326)
Q Consensus 1087 ~a--a~gv~i~~~gl~~~~aG~~~~v~~ 1112 (1326)
.. |-.+.+ ..||..-..|+.++...
T Consensus 393 ~qlsagnial-t~glk~tatgdtivask 419 (753)
T KOG0464|consen 393 EQLSAGNIAL-TAGLKHTATGDTIVASK 419 (753)
T ss_pred hhcccccEEE-EecceeeccCCeEEecc
Confidence 22 222333 35898888898876543
No 76
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.83 E-value=2.7e-20 Score=208.00 Aligned_cols=282 Identities=20% Similarity=0.281 Sum_probs=185.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhcc--------------c--------cc
Q 000728 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKA--------------N--------AT 853 (1326)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~--------------~--------~~ 853 (1326)
.|+++|..|+||||||..|.......|..+ ..++.+.++.+....++..+.. . ..
T Consensus 169 RvAVlGg~D~GKSTLlGVLTQgeLDnG~Gr---ARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e 245 (591)
T KOG1143|consen 169 RVAVLGGCDVGKSTLLGVLTQGELDNGNGR---ARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVE 245 (591)
T ss_pred EEEEecCcccCcceeeeeeecccccCCCCe---eeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHh
Confidence 389999999999999999987655544321 1122222222211111111110 0 01
Q ss_pred cCCCCEEEEeCCCCcchhhhhhhccCc--cceeEEeeccccCCchhHHHHHHHHHhcCCcEEEEEeccccccCcccCCCc
Q 000728 854 LKVPGLLVIDTPGHESFTNLRSRGSGL--CDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNA 931 (1326)
Q Consensus 854 ~~~~~I~IIDTPGhe~F~~lr~rg~~~--aDiaILVVDa~~Gv~~QT~E~l~~l~~~~vP~IVvINKiD~~~~w~~~~~a 931 (1326)
-...-++|||..||..|...+..|+.. +|+++|||+|+.|+...|++||.++..+++||+|+++|||++. ..
T Consensus 246 ~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTrEHLgl~~AL~iPfFvlvtK~Dl~~------~~ 319 (591)
T KOG1143|consen 246 KSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTTREHLGLIAALNIPFFVLVTKMDLVD------RQ 319 (591)
T ss_pred hhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccccHHHHHHHHHhCCCeEEEEEeecccc------ch
Confidence 112359999999999999888877765 7999999999999999999999999999999999999999973 11
Q ss_pred hHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhh-cc----------cCCCcceeEEeCCCcCCCChhhHHHHHH
Q 000728 932 PIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYY-KN----------KDRGETFNIVPTSAISGEGIPDLLLLLV 1000 (1326)
Q Consensus 932 ~~~~~L~~q~~~~~~e~~~~l~~I~~~L~e~Gl~~e~~~-~~----------~d~g~~v~iVpvSA~tGeGI~eLl~~L~ 1000 (1326)
.+ ...+..+.+.|...|.....+. .+ --.+..+|||.+|.++|+|+.-|.-+|
T Consensus 320 ~~---------------~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~fL- 383 (591)
T KOG1143|consen 320 GL---------------KKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRTFL- 383 (591)
T ss_pred hH---------------HHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHHHHH-
Confidence 11 1223334444444443211100 00 113567899999999999996554433
Q ss_pred HHHHHh--Hhhhhh-cccccceeEEEEEEEeCceeEEEEEEEeeEecCCCEEEEccCCCceeeeeeeccCCCCCceeeec
Q 000728 1001 QWTQKT--MVEKLT-FRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVK 1077 (1326)
Q Consensus 1001 ~~~q~~--l~e~l~-~~~~~~~~VlEvk~~~G~Gtvi~giV~~G~Lr~GD~IVl~g~~g~~~~~IR~Ll~p~p~~e~rVk 1077 (1326)
..+.+. -.++.. ...+..+.|.|+|.++..|+++.|++..|.|++|+.+++++.. .+.+..++|.
T Consensus 384 n~Lsp~~~~~e~~~L~q~~~eFqvdEiy~Vp~VG~VVGG~Ls~G~l~Eg~~~~vGP~~------------DG~F~~itV~ 451 (591)
T KOG1143|consen 384 NCLSPAGTAEERIQLVQLPAEFQVDEIYNVPHVGQVVGGMLSEGQLHEGADVLVGPMK------------DGTFEKITVG 451 (591)
T ss_pred hhcCCcCChHHHHHHhcCcceeeHhHeecCCcccccccceeeeceeccCceeEeecCC------------CCceeEEEee
Confidence 222211 011111 1234578899999999999999999999999999999886543 2234455555
Q ss_pred ceeeccc---ccccccceeeeccccccccCCCceEEcCCc
Q 000728 1078 GTYLHHK---QIKAAQGIKITAQGLEHAIAGTGLYVVGPD 1114 (1326)
Q Consensus 1078 ~~~~~~k---~v~aa~gv~i~~~gl~~~~aG~~~~v~~~~ 1114 (1326)
+|..... -+.+++...+++...+.+....+|+++.++
T Consensus 452 sI~Rnr~acrvvraGqaAslsl~d~D~~~LR~GMVl~~~~ 491 (591)
T KOG1143|consen 452 SIRRNRQACRVVRAGQAASLSLNDPDGVSLRRGMVLAEID 491 (591)
T ss_pred eeeccccceeeecCccceeeeccCCCccchhcceEEeecC
Confidence 5554332 345667777777766777778888887554
No 77
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.82 E-value=7e-20 Score=207.55 Aligned_cols=129 Identities=27% Similarity=0.357 Sum_probs=93.1
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCcccccccCceee--eeeeeEecccc-chhhhhhhcc---ccccCCCCEEEEeCC
Q 000728 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQ--QIGATYFPAEN-IRERTRELKA---NATLKVPGLLVIDTP 865 (1326)
Q Consensus 792 ~R~piV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq--~iga~~~~~~~-~~~~~~~v~~---~~~~~~~~I~IIDTP 865 (1326)
+|| |+|+||+|+|||||+++|++........+.+.. ..|.+...+.. .+.+...+.. ...|....|+|||||
T Consensus 2 ~Rn--i~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTP 79 (267)
T cd04169 2 RRT--FAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTP 79 (267)
T ss_pred ccE--EEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECC
Confidence 566 999999999999999999864322111111110 01222222211 1112222211 234556679999999
Q ss_pred CCcchhhhhhhccCccceeEEeeccccCCchhHHHHHHHHHhcCCcEEEEEeccccc
Q 000728 866 GHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRL 922 (1326)
Q Consensus 866 Ghe~F~~lr~rg~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~vP~IVvINKiD~~ 922 (1326)
||.+|...+.++++.+|++|||||+..|+..++..+|.++...++|+|||+||||+.
T Consensus 80 G~~df~~~~~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~~~~P~iivvNK~D~~ 136 (267)
T cd04169 80 GHEDFSEDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLRGIPIITFINKLDRE 136 (267)
T ss_pred CchHHHHHHHHHHHHCCEEEEEEECCCCccHHHHHHHHHHHhcCCCEEEEEECCccC
Confidence 999999988889999999999999999999999999999988899999999999985
No 78
>cd03703 aeIF5B_II aeIF5B_II: This family represents the domain II of archeal and eukaryotic aeIF5B. aeIF5B is a homologue of prokaryotic Initiation Factor 2 (IF2). Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of joining of 60S subunits. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains of EF1A, eEF1A and aeIF2gamma.
Probab=99.82 E-value=4.3e-20 Score=179.45 Aligned_cols=109 Identities=65% Similarity=1.020 Sum_probs=104.2
Q ss_pred cceeEEEEEEEeCceeEEEEEEEeeEecCCCEEEEccCCCceeeeeeeccCCCCCceeeecceeecccccccccceeeec
Q 000728 1017 LQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAAQGIKITA 1096 (1326)
Q Consensus 1017 ~~~~VlEvk~~~G~Gtvi~giV~~G~Lr~GD~IVl~g~~g~~~~~IR~Ll~p~p~~e~rVk~~~~~~k~v~aa~gv~i~~ 1096 (1326)
++|+|||++..+|+|+|++++|++|+|+.||+|++|+++||++|+||+||+|.|++++|+++.|.+++++.+|+|++|.+
T Consensus 1 ~~gtVlEvk~~~G~G~t~dvIl~~GtL~~GD~Iv~g~~~Gpi~tkVRaLl~~~~~~E~r~~~~~~~vk~v~aa~gvkI~~ 80 (110)
T cd03703 1 LQGTVLEVKEEEGLGTTIDVILYDGTLREGDTIVVCGLNGPIVTKVRALLKPQPLKELRVKSRFIHVKEVKAAAGVKILA 80 (110)
T ss_pred CcEEEEEEEEcCCCceEEEEEEECCeEecCCEEEEccCCCCceEEEeEecCCCCchhhccccccceeeEEecCCCcEEEe
Confidence 36999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCceEEcCCcchHHHHHHHHH
Q 000728 1097 QGLEHAIAGTGLYVVGPDDDLEDVKEEAM 1125 (1326)
Q Consensus 1097 ~gl~~~~aG~~~~v~~~~~~~~~~~~~~~ 1125 (1326)
+||+.++||+.|+++.++++++.+.++++
T Consensus 81 ~gL~~v~aG~~~~vv~~e~~a~~~~~~~~ 109 (110)
T cd03703 81 PDLEKAIAGSPLLVVGPEDEIEELKEEVM 109 (110)
T ss_pred CCCccccCCCEEEEECCHHHHHHHHHHHh
Confidence 99999999999999999998888876653
No 79
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.82 E-value=8.4e-20 Score=196.83 Aligned_cols=156 Identities=31% Similarity=0.359 Sum_probs=108.9
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHc--Ccccccc--------------cCceeeeeeeeEeccccchhhhhhhccccccC
Q 000728 792 LRSPICCIMGHVDTGKTKLLDCIRG--TNVQEGE--------------AGGITQQIGATYFPAENIRERTRELKANATLK 855 (1326)
Q Consensus 792 ~R~piV~IlGhvdaGKTTLLd~L~~--~~v~~ge--------------~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~ 855 (1326)
+|+ |+|+||+++|||||+++|++ ..+.... ..|+|.......+ .+.
T Consensus 2 ~r~--i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~----------------~~~ 63 (194)
T cd01891 2 IRN--IAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAV----------------TYK 63 (194)
T ss_pred ccE--EEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEE----------------EEC
Confidence 566 99999999999999999986 2322211 1222222221111 123
Q ss_pred CCCEEEEeCCCCcchhhhhhhccCccceeEEeeccccCCchhHHHHHHHHHhcCCcEEEEEeccccccCcccCCCchHHH
Q 000728 856 VPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVK 935 (1326)
Q Consensus 856 ~~~I~IIDTPGhe~F~~lr~rg~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~vP~IVvINKiD~~~~w~~~~~a~~~~ 935 (1326)
...++|||||||.+|..++..+++.+|++|||||+.++..+++..++..+...++|+|||+||+|+... .+..
T Consensus 64 ~~~~~l~DtpG~~~~~~~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~-------~~~~ 136 (194)
T cd01891 64 DTKINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPDA-------RPEE 136 (194)
T ss_pred CEEEEEEECCCcHHHHHHHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECCCCCCC-------CHHH
Confidence 346999999999999999999999999999999999998888888888887789999999999998621 1111
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhH
Q 000728 936 AIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDL 995 (1326)
Q Consensus 936 ~L~~q~~~~~~e~~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eL 995 (1326)
.+..+...+...+.... ...+++|++||++|.|+.++
T Consensus 137 ---------------~~~~~~~~~~~~~~~~~--------~~~~~iv~~Sa~~g~~~~~~ 173 (194)
T cd01891 137 ---------------VVDEVFDLFIELGATEE--------QLDFPVLYASAKNGWASLNL 173 (194)
T ss_pred ---------------HHHHHHHHHHHhCCccc--------cCccCEEEeehhcccccccc
Confidence 11222222333322111 11368999999999998766
No 80
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.82 E-value=2.1e-19 Score=206.03 Aligned_cols=247 Identities=21% Similarity=0.291 Sum_probs=160.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCcccccccCcee---eeeeeeEeccccchhhhhhhcc---ccccCCCCEEEEeCCCCcc
Q 000728 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGIT---QQIGATYFPAENIRERTRELKA---NATLKVPGLLVIDTPGHES 869 (1326)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGIT---q~iga~~~~~~~~~~~~~~v~~---~~~~~~~~I~IIDTPGhe~ 869 (1326)
..+||-|+|+|||||...|+--.-....+|.+. ....+.+...+..+.+++++.. +..|....|||+|||||++
T Consensus 14 TFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPGHeD 93 (528)
T COG4108 14 TFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPGHED 93 (528)
T ss_pred ceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCCccc
Confidence 489999999999999999973211111111111 1111122222222333333332 2345556799999999999
Q ss_pred hhhhhhhccCccceeEEeeccccCCchhHHHHHHHHHhcCCcEEEEEeccccccCcccCCCchHHHHHHHhhHH------
Q 000728 870 FTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTD------ 943 (1326)
Q Consensus 870 F~~lr~rg~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~------ 943 (1326)
|+.-+.|.+..+|.||+|||+..|+++||+..+..|+.+++|||-+|||+|+.. .+..+.|...-..
T Consensus 94 FSEDTYRtLtAvDsAvMVIDaAKGiE~qT~KLfeVcrlR~iPI~TFiNKlDR~~-------rdP~ELLdEiE~~L~i~~~ 166 (528)
T COG4108 94 FSEDTYRTLTAVDSAVMVIDAAKGIEPQTLKLFEVCRLRDIPIFTFINKLDREG-------RDPLELLDEIEEELGIQCA 166 (528)
T ss_pred cchhHHHHHHhhheeeEEEecccCccHHHHHHHHHHhhcCCceEEEeecccccc-------CChHHHHHHHHHHhCccee
Confidence 999999999999999999999999999999999999999999999999999863 1122222111000
Q ss_pred -----------------------------------------------HHHHHHHHH-HHHHHH---HHHcC--Cchhhhh
Q 000728 944 -----------------------------------------------VQNEFNMRL-VQIVTQ---LKEQG--MNTELYY 970 (1326)
Q Consensus 944 -----------------------------------------------~~~e~~~~l-~~I~~~---L~e~G--l~~e~~~ 970 (1326)
+...+...+ ..+... +...+ +..+.+.
T Consensus 167 PitWPIG~gk~F~Gvy~l~~~~v~~y~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~ee~EL~~~a~~~Fd~~~fl 246 (528)
T COG4108 167 PITWPIGMGKDFKGVYHLYNDEVELYESGHTDQERRADIVKGLDNPELDALLGEDLAEQLREELELVQGAGNEFDLEAFL 246 (528)
T ss_pred cccccccCCcccceeeeeccCEEEEeccCCCccccccccccCCCChhHHhhhchHHHHHHHHHHHHHHhhccccCHHHHh
Confidence 000000000 111111 11100 1122221
Q ss_pred cccCCCcceeEEeCCCcCCCChhhHHHHHHHHHHHhHhhhhh-----c-ccccceeEEEEEEE---eCceeEEEEEEEee
Q 000728 971 KNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLT-----F-RNELQCTVLEVKVI---EGHGTTIDVVLVNG 1041 (1326)
Q Consensus 971 ~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~q~~l~e~l~-----~-~~~~~~~VlEvk~~---~G~Gtvi~giV~~G 1041 (1326)
-|...|+|+.||+++-||..+|+.++.|.+.+.....+ + .+.+.+.|+.+..- ..+-.++..+|.+|
T Consensus 247 ----~G~~TPVFFGSAl~NFGV~~~L~~~~~~AP~P~~~~a~~~~v~p~e~kfsGFVFKIQANMDp~HRDRIAFmRv~SG 322 (528)
T COG4108 247 ----AGELTPVFFGSALGNFGVDHFLDALVDWAPSPRARQADTREVEPTEDKFSGFVFKIQANMDPKHRDRIAFMRVCSG 322 (528)
T ss_pred ----cCCccceEehhhhhccCHHHHHHHHHhhCCCCCcccCCcCcccCCCCccceEEEEEEcCCCcccccceeEEEeccc
Confidence 25678999999999999999999999998876544322 2 23478888877532 45778899999999
Q ss_pred EecCCCEEEEcc
Q 000728 1042 VLHEGDQIVVCG 1053 (1326)
Q Consensus 1042 ~Lr~GD~IVl~g 1053 (1326)
.+..|..+...-
T Consensus 323 kferGMkv~h~r 334 (528)
T COG4108 323 KFERGMKVTHVR 334 (528)
T ss_pred cccCCceeeeee
Confidence 999999886543
No 81
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.81 E-value=1.8e-19 Score=190.78 Aligned_cols=170 Identities=35% Similarity=0.444 Sum_probs=118.9
Q ss_pred EEEEeCCCCCHHHHHHHHHcCccccccc----------------CceeeeeeeeEeccccchhhhhhhccccccCCCCEE
Q 000728 797 CCIMGHVDTGKTKLLDCIRGTNVQEGEA----------------GGITQQIGATYFPAENIRERTRELKANATLKVPGLL 860 (1326)
Q Consensus 797 V~IlGhvdaGKTTLLd~L~~~~v~~ge~----------------gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~ 860 (1326)
|+|+|++|+|||||+++|++.....+.. +|+|.+.....+. +....++
T Consensus 2 v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~ 65 (189)
T cd00881 2 VGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFE----------------WPDRRVN 65 (189)
T ss_pred EEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEe----------------eCCEEEE
Confidence 8999999999999999998766543321 2223222222211 2234699
Q ss_pred EEeCCCCcchhhhhhhccCccceeEEeeccccCCchhHHHHHHHHHhcCCcEEEEEeccccccCcccCCCchHHHHHHHh
Q 000728 861 VIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQ 940 (1326)
Q Consensus 861 IIDTPGhe~F~~lr~rg~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q 940 (1326)
||||||+.+|..++..++..+|++|+|||+.++...+..+++.++...+.|++||+||+|+... ..+
T Consensus 66 liDtpG~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~i~iv~nK~D~~~~------~~~------- 132 (189)
T cd00881 66 FIDTPGHEDFSSEVIRGLSVSDGAILVVDANEGVQPQTREHLRIAREGGLPIIVAINKIDRVGE------EDL------- 132 (189)
T ss_pred EEeCCCcHHHHHHHHHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHHCCCCeEEEEECCCCcch------hcH-------
Confidence 9999999999999999999999999999999999999999998888889999999999999620 111
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHHHH
Q 000728 941 NTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1004 (1326)
Q Consensus 941 ~~~~~~e~~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~q 1004 (1326)
...+..+...+...++... +-........+++|++||++|.||.+++.+|..+++
T Consensus 133 --------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~ 187 (189)
T cd00881 133 --------EEVLREIKELLGLIGFIST-KEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHLP 187 (189)
T ss_pred --------HHHHHHHHHHHccccccch-hhhhcccCCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence 1112223333333221100 000000123579999999999999999999887653
No 82
>COG1159 Era GTPase [General function prediction only]
Probab=99.79 E-value=1.8e-18 Score=192.98 Aligned_cols=217 Identities=24% Similarity=0.355 Sum_probs=141.2
Q ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHcCcccc-cccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCC-Cc
Q 000728 791 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQE-GEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPG-HE 868 (1326)
Q Consensus 791 ~~R~piV~IlGhvdaGKTTLLd~L~~~~v~~-ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPG-he 868 (1326)
.+|+..|||+|.+|+|||||||+|++..+.. +....+|++.-...+ +....+|.|+|||| |.
T Consensus 3 ~~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~----------------t~~~~QiIfvDTPGih~ 66 (298)
T COG1159 3 KFKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIV----------------TTDNAQIIFVDTPGIHK 66 (298)
T ss_pred CceEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEE----------------EcCCceEEEEeCCCCCC
Confidence 5788899999999999999999999987652 122222322211111 12235799999999 33
Q ss_pred c---h----hhhhhhccCccceeEEeeccccCCchhHHHHHHHHHhcCCcEEEEEeccccccCcccCCCchHHHHHHHhh
Q 000728 869 S---F----TNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQN 941 (1326)
Q Consensus 869 ~---F----~~lr~rg~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~ 941 (1326)
. + ......++..+|+++||||+++++.+.....+..++..++|+|+++||+|+... ..
T Consensus 67 pk~~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~~~pvil~iNKID~~~~------~~--------- 131 (298)
T COG1159 67 PKHALGELMNKAARSALKDVDLILFVVDADEGWGPGDEFILEQLKKTKTPVILVVNKIDKVKP------KT--------- 131 (298)
T ss_pred cchHHHHHHHHHHHHHhccCcEEEEEEeccccCCccHHHHHHHHhhcCCCeEEEEEccccCCc------HH---------
Confidence 2 1 222335788899999999999999999998999999888999999999998731 10
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHHHHH----------------
Q 000728 942 TDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQK---------------- 1005 (1326)
Q Consensus 942 ~~~~~e~~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~q~---------------- 1005 (1326)
.+..+...+... ..+..+||+||++|.|++.|+..|..+++.
T Consensus 132 ---------~l~~~~~~~~~~-------------~~f~~ivpiSA~~g~n~~~L~~~i~~~Lpeg~~~yp~d~itD~~~r 189 (298)
T COG1159 132 ---------VLLKLIAFLKKL-------------LPFKEIVPISALKGDNVDTLLEIIKEYLPEGPWYYPEDQITDRPER 189 (298)
T ss_pred ---------HHHHHHHHHHhh-------------CCcceEEEeeccccCCHHHHHHHHHHhCCCCCCcCChhhccCChHH
Confidence 011222222221 134589999999999999999999887642
Q ss_pred -----hHhhhhhc--cc--ccc-eeEEEEEEE-eCceeEEEEEEEeeEecCCCEEEEccCCCceeeee
Q 000728 1006 -----TMVEKLTF--RN--ELQ-CTVLEVKVI-EGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTI 1062 (1326)
Q Consensus 1006 -----~l~e~l~~--~~--~~~-~~VlEvk~~-~G~Gtvi~giV~~G~Lr~GD~IVl~g~~g~~~~~I 1062 (1326)
.+++++.. .+ |.. .+.++-+.. +.....+.+.|. +=|.+++-++.|-+|..+..|
T Consensus 190 f~~aEiiREk~~~~l~eElPhsv~VeIe~~~~~~~~~~~I~a~I~--Ver~sQK~IiIGk~G~~iK~I 255 (298)
T COG1159 190 FLAAEIIREKLLLLLREELPHSVAVEIEEFEEREKGLLKIHATIY--VERESQKGIIIGKNGAMIKKI 255 (298)
T ss_pred HHHHHHHHHHHHHhcccccCceEEEEEEEEEecCCCeEEEEEEEE--EecCCccceEECCCcHHHHHH
Confidence 12222211 12 211 222332333 344445555554 557788878888887654433
No 83
>PRK15494 era GTPase Era; Provisional
Probab=99.79 E-value=2.8e-18 Score=200.85 Aligned_cols=215 Identities=25% Similarity=0.288 Sum_probs=137.6
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCcccc-cccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcc-
Q 000728 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQE-GEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES- 869 (1326)
Q Consensus 792 ~R~piV~IlGhvdaGKTTLLd~L~~~~v~~-ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~- 869 (1326)
.+...|+|+|++|+|||||+++|++..+.. ....+.|++.....+. +....|+||||||+..
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~----------------~~~~qi~~~DTpG~~~~ 113 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIIT----------------LKDTQVILYDTPGIFEP 113 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEE----------------eCCeEEEEEECCCcCCC
Confidence 466779999999999999999999877642 2223344332211111 1224599999999743
Q ss_pred hhhh-------hhhccCccceeEEeeccccCCchhHHHHHHHHHhcCCcEEEEEeccccccCcccCCCchHHHHHHHhhH
Q 000728 870 FTNL-------RSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNT 942 (1326)
Q Consensus 870 F~~l-------r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~ 942 (1326)
|..+ ...++..||++|||||+..++...+..++..++..+.|+|||+||+|+.. ..
T Consensus 114 ~~~l~~~~~r~~~~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~~~p~IlViNKiDl~~-------~~---------- 176 (339)
T PRK15494 114 KGSLEKAMVRCAWSSLHSADLVLLIIDSLKSFDDITHNILDKLRSLNIVPIFLLNKIDIES-------KY---------- 176 (339)
T ss_pred cccHHHHHHHHHHHHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEEhhcCcc-------cc----------
Confidence 3221 12357789999999999988887777777778878889999999999852 00
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHHHHH-----------------
Q 000728 943 DVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQK----------------- 1005 (1326)
Q Consensus 943 ~~~~e~~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~q~----------------- 1005 (1326)
+..+...+... .....+|||||++|.||.+|+.+|..+++.
T Consensus 177 ---------~~~~~~~l~~~-------------~~~~~i~~iSAktg~gv~eL~~~L~~~l~~~~~~~~~~~~td~~~~~ 234 (339)
T PRK15494 177 ---------LNDIKAFLTEN-------------HPDSLLFPISALSGKNIDGLLEYITSKAKISPWLYAEDDITDLPMRF 234 (339)
T ss_pred ---------HHHHHHHHHhc-------------CCCcEEEEEeccCccCHHHHHHHHHHhCCCCCCCCCCCCCCCCCHHH
Confidence 01122222211 123579999999999999999999887532
Q ss_pred ----hHhhhhhc--cc--ccce-eEEEEEEEeC-ceeEEEEEEEeeEecCCCEEEEccCCCceeeeee
Q 000728 1006 ----TMVEKLTF--RN--ELQC-TVLEVKVIEG-HGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIR 1063 (1326)
Q Consensus 1006 ----~l~e~l~~--~~--~~~~-~VlEvk~~~G-~Gtvi~giV~~G~Lr~GD~IVl~g~~g~~~~~IR 1063 (1326)
.+.+++.. .. |... +.++.+.... ....|.+.|+ +-+.++.-+|+|.+|..+.+|.
T Consensus 235 ~~~eiiRe~~~~~~~~EiP~~~~v~i~~~~~~~~~~~~i~~~i~--v~~~sqk~iiiG~~g~~ik~i~ 300 (339)
T PRK15494 235 IAAEITREQLFLNLQKELPYKLTVQTEKWEDLKDKSVKINQVIV--VSRESYKTIILGKNGSKIKEIG 300 (339)
T ss_pred HHHHHHHHHHHhhCCcccCceEEEEEEEEEEcCCCeEEEEEEEE--ECCCCceeEEEcCCcHHHHHHH
Confidence 22222211 22 2222 2233333222 2334666665 5678888889999887665554
No 84
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.78 E-value=6.7e-19 Score=192.99 Aligned_cols=171 Identities=22% Similarity=0.280 Sum_probs=110.5
Q ss_pred EEEEeCCCCCHHHHHHHHHcCcccccc-------------------cCceeeeeeeeEeccccchhhhhhhccccccCCC
Q 000728 797 CCIMGHVDTGKTKLLDCIRGTNVQEGE-------------------AGGITQQIGATYFPAENIRERTRELKANATLKVP 857 (1326)
Q Consensus 797 V~IlGhvdaGKTTLLd~L~~~~v~~ge-------------------~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~ 857 (1326)
|+|+||+|||||||+++|+........ ..|+|.......+.+... .....
T Consensus 3 v~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~-----------~~~~~ 71 (213)
T cd04167 3 VAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDS-----------KGKSY 71 (213)
T ss_pred EEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcC-----------CCCEE
Confidence 999999999999999999865433221 122222222222111100 01123
Q ss_pred CEEEEeCCCCcchhhhhhhccCccceeEEeeccccCCchhHHHHHHHHHhcCCcEEEEEeccccccCcccCCCchHHHHH
Q 000728 858 GLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAI 937 (1326)
Q Consensus 858 ~I~IIDTPGhe~F~~lr~rg~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~vP~IVvINKiD~~~~w~~~~~a~~~~~L 937 (1326)
.|+|||||||.+|...+.+++..+|++|+|||+.++...++..++..+...++|+|||+||+|++.. . ...+.
T Consensus 72 ~i~iiDtpG~~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~~~-~--~~l~~---- 144 (213)
T cd04167 72 LFNIIDTPGHVNFMDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAILEGLPIVLVINKIDRLIL-E--LKLPP---- 144 (213)
T ss_pred EEEEEECCCCcchHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCcc-c--ccCCH----
Confidence 5999999999999999999999999999999999999999988888888788999999999998621 0 00000
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChh
Q 000728 938 KQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIP 993 (1326)
Q Consensus 938 ~~q~~~~~~e~~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~ 993 (1326)
......+...+..+...+...+++...++- .-...++..||++|+++.
T Consensus 145 ----~~~~~~l~~~i~~~n~~~~~~~~~~~~~~~----p~~~nv~~~s~~~~w~~~ 192 (213)
T cd04167 145 ----NDAYFKLRHIIDEVNNIIASFSTTLSFLFS----PENGNVCFASSKFGFCFT 192 (213)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHhcCCCceEec----cCCCeEEEEecCCCeEEe
Confidence 011123333344444445555443221111 011358889999999985
No 85
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.78 E-value=6.4e-18 Score=192.01 Aligned_cols=211 Identities=19% Similarity=0.280 Sum_probs=131.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCccc-ccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcch----
Q 000728 796 ICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF---- 870 (1326)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~~~v~-~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F---- 870 (1326)
.|+|+|++|+|||||+++|++.++. .+..+++|++.-...+. .....+.||||||+...
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~----------------~~~~qii~vDTPG~~~~~~~l 65 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHT----------------TGASQIIFIDTPGFHEKKHSL 65 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEE----------------cCCcEEEEEECcCCCCCcchH
Confidence 5899999999999999999988754 23344555543211111 11235999999996532
Q ss_pred ----hhhhhhccCccceeEEeeccccCCchhHHHHHHHHHhcCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHH
Q 000728 871 ----TNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQN 946 (1326)
Q Consensus 871 ----~~lr~rg~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~ 946 (1326)
...+..++..+|++|||+|++++...+ ..++..+...+.|+|+|+||+|+.. ...+
T Consensus 66 ~~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~-~~i~~~l~~~~~p~ilV~NK~Dl~~------~~~~------------- 125 (270)
T TIGR00436 66 NRLMMKEARSAIGGVDLILFVVDSDQWNGDG-EFVLTKLQNLKRPVVLTRNKLDNKF------KDKL------------- 125 (270)
T ss_pred HHHHHHHHHHHHhhCCEEEEEEECCCCCchH-HHHHHHHHhcCCCEEEEEECeeCCC------HHHH-------------
Confidence 112345678999999999999876554 4456667778899999999999852 0000
Q ss_pred HHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHHHHH---------------------
Q 000728 947 EFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQK--------------------- 1005 (1326)
Q Consensus 947 e~~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~q~--------------------- 1005 (1326)
. .....+... ....++|++||++|.||++|+.+|..+++.
T Consensus 126 -----~-~~~~~~~~~-------------~~~~~v~~iSA~~g~gi~~L~~~l~~~l~~~~~~~~~~~~t~~~~~~~~~e 186 (270)
T TIGR00436 126 -----L-PLIDKYAIL-------------EDFKDIVPISALTGDNTSFLAAFIEVHLPEGPFRYPEDYVTDQPDRFKISE 186 (270)
T ss_pred -----H-HHHHHHHhh-------------cCCCceEEEecCCCCCHHHHHHHHHHhCCCCCCCCCCcccCCCCHHHHHHH
Confidence 0 001111110 112379999999999999999999876532
Q ss_pred hHhhhhh--ccc--ccc-eeEEEEEEEeC-ceeEEEEEEEeeEecCCCEEEEccCCCceeeeee
Q 000728 1006 TMVEKLT--FRN--ELQ-CTVLEVKVIEG-HGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIR 1063 (1326)
Q Consensus 1006 ~l~e~l~--~~~--~~~-~~VlEvk~~~G-~Gtvi~giV~~G~Lr~GD~IVl~g~~g~~~~~IR 1063 (1326)
.+.+++. ... |.. ...++.+.... ....|.+.|. +=+.++.-+|+|.+|..+..|.
T Consensus 187 ~ire~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~i~~~i~--v~~~s~k~iiig~~g~~ik~i~ 248 (270)
T TIGR00436 187 IIREKIIRYTKEEIPHSVRVEIERKSFNEKGLLKIHALIS--VERESQKKIIIGKNGSMIKAIG 248 (270)
T ss_pred HHHHHHHHhcccccCceEEEEEEEEEECCCCeEEEEEEEE--ECcCCceeEEEcCCcHHHHHHH
Confidence 2222221 122 221 22333333322 2333555554 4577888888998887655443
No 86
>PRK00089 era GTPase Era; Reviewed
Probab=99.78 E-value=9.2e-18 Score=192.54 Aligned_cols=216 Identities=22% Similarity=0.331 Sum_probs=136.1
Q ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHcCcccc-cccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcc
Q 000728 791 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQE-GEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES 869 (1326)
Q Consensus 791 ~~R~piV~IlGhvdaGKTTLLd~L~~~~v~~-ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~ 869 (1326)
.+|+.+|+|+|++|+|||||+++|++..+.. ...+.+|.+.....+. .....++||||||+..
T Consensus 2 ~~~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~----------------~~~~qi~~iDTPG~~~ 65 (292)
T PRK00089 2 GFKSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVT----------------EDDAQIIFVDTPGIHK 65 (292)
T ss_pred CceeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEE----------------cCCceEEEEECCCCCC
Confidence 4688899999999999999999999876542 1222222221111110 0113599999999654
Q ss_pred h--------hhhhhhccCccceeEEeeccccCCchhHHHHHHHHHhcCCcEEEEEeccccccCcccCCCchHHHHHHHhh
Q 000728 870 F--------TNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQN 941 (1326)
Q Consensus 870 F--------~~lr~rg~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~ 941 (1326)
. ......++..+|++|||+|+++++......++..+...++|+|+|+||+|+... ..
T Consensus 66 ~~~~l~~~~~~~~~~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~~~pvilVlNKiDl~~~------~~--------- 130 (292)
T PRK00089 66 PKRALNRAMNKAAWSSLKDVDLVLFVVDADEKIGPGDEFILEKLKKVKTPVILVLNKIDLVKD------KE--------- 130 (292)
T ss_pred chhHHHHHHHHHHHHHHhcCCEEEEEEeCCCCCChhHHHHHHHHhhcCCCEEEEEECCcCCCC------HH---------
Confidence 3 233445678899999999999988777777788888778999999999999621 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHHHHH----------------
Q 000728 942 TDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQK---------------- 1005 (1326)
Q Consensus 942 ~~~~~e~~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~q~---------------- 1005 (1326)
.+......+... .+..++|++||++|.|+.+|+.+|..+++.
T Consensus 131 ---------~l~~~~~~l~~~-------------~~~~~i~~iSA~~~~gv~~L~~~L~~~l~~~~~~y~~~~~td~~~r 188 (292)
T PRK00089 131 ---------ELLPLLEELSEL-------------MDFAEIVPISALKGDNVDELLDVIAKYLPEGPPYYPEDQITDRPER 188 (292)
T ss_pred ---------HHHHHHHHHHhh-------------CCCCeEEEecCCCCCCHHHHHHHHHHhCCCCCCCCCCCCCCCCCHH
Confidence 011111222211 124589999999999999999999876531
Q ss_pred -----hHhhhhh--ccc--ccc-eeEEEEEEEeCcee-EEEEEEEeeEecCCCEEEEccCCCceeeeee
Q 000728 1006 -----TMVEKLT--FRN--ELQ-CTVLEVKVIEGHGT-TIDVVLVNGVLHEGDQIVVCGLQGPIVTTIR 1063 (1326)
Q Consensus 1006 -----~l~e~l~--~~~--~~~-~~VlEvk~~~G~Gt-vi~giV~~G~Lr~GD~IVl~g~~g~~~~~IR 1063 (1326)
.+.+.+. ... |.. ...++.+... |. .|.+.|. +-+.++.-+|+|.+|..+.+|+
T Consensus 189 ~~~~EiiRe~~~~~l~~e~p~~~~v~~~~~~~~--~~~~i~~~i~--v~~~~~k~i~ig~~g~~i~~i~ 253 (292)
T PRK00089 189 FLAAEIIREKLLRLLGDELPYSVAVEIEKFEER--GLVRIEATIY--VERDSQKGIIIGKGGAMLKKIG 253 (292)
T ss_pred HHHHHHHHHHHHhhCCccCCceEEEEEEEEEEC--CeEEEEEEEE--EccCCceeEEEeCCcHHHHHHH
Confidence 1111111 112 222 2223323333 33 2444444 4477888888898887655554
No 87
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.77 E-value=2.5e-18 Score=195.12 Aligned_cols=125 Identities=23% Similarity=0.268 Sum_probs=90.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEecccc-chhhhhhhcc---ccccCCCCEEEEeCCCCcchh
Q 000728 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAEN-IRERTRELKA---NATLKVPGLLVIDTPGHESFT 871 (1326)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~-~~~~~~~v~~---~~~~~~~~I~IIDTPGhe~F~ 871 (1326)
+|+|+||+|+|||||+++|++........+.+. .|.+...+.. .+.+..++.. ...|....|+|||||||.+|.
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~--~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~ 78 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVE--DGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFV 78 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeec--CCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHH
Confidence 389999999999999999985432211111111 1222111111 0111111111 123455679999999999999
Q ss_pred hhhhhccCccceeEEeeccccCCchhHHHHHHHHHhcCCcEEEEEeccccc
Q 000728 872 NLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRL 922 (1326)
Q Consensus 872 ~lr~rg~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~vP~IVvINKiD~~ 922 (1326)
..+.+++..+|++|+|||++.|...+|..+|.++...++|+|||+||+|+.
T Consensus 79 ~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~~~p~iivvNK~D~~ 129 (268)
T cd04170 79 GETRAALRAADAALVVVSAQSGVEVGTEKLWEFADEAGIPRIIFINKMDRE 129 (268)
T ss_pred HHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCccC
Confidence 999999999999999999999999999999999999999999999999986
No 88
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.76 E-value=9.1e-18 Score=175.29 Aligned_cols=153 Identities=18% Similarity=0.200 Sum_probs=105.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchhhhhh
Q 000728 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1326)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~~lr~ 875 (1326)
.|+|+|+.|+|||||+++|+...+.......+...+....+.... ....|+||||||++.|..++.
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~i~Dt~G~~~~~~~~~ 67 (161)
T cd04124 2 KIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEG--------------KTILVDFWDTAGQERFQTMHA 67 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECC--------------EEEEEEEEeCCCchhhhhhhH
Confidence 599999999999999999998776544333332222222111110 112488999999999999999
Q ss_pred hccCccceeEEeeccccCCchhHHHHH-HHHHhc--CCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHHHHHHHH
Q 000728 876 RGSGLCDIAILVVDIMHGLEPQTIESL-NLLKMR--NTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRL 952 (1326)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E~l-~~l~~~--~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~e~~~~l 952 (1326)
.+++.+|++|||+|++++...+....| ..++.. ++|+|||+||+|+.. . . .
T Consensus 68 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~~-------~-~-----------~------- 121 (161)
T cd04124 68 SYYHKAHACILVFDVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLDP-------S-V-----------T------- 121 (161)
T ss_pred HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccCch-------h-H-----------H-------
Confidence 999999999999999886655544433 444433 689999999999841 0 0 0
Q ss_pred HHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHHH
Q 000728 953 VQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1326)
Q Consensus 953 ~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1326)
.... .+... ..++++++||++|.||.+++..|+..+
T Consensus 122 ~~~~-~~~~~--------------~~~~~~~~Sa~~~~gv~~l~~~l~~~~ 157 (161)
T cd04124 122 QKKF-NFAEK--------------HNLPLYYVSAADGTNVVKLFQDAIKLA 157 (161)
T ss_pred HHHH-HHHHH--------------cCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 0000 11110 125899999999999999999987654
No 89
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.76 E-value=4.9e-18 Score=174.13 Aligned_cols=147 Identities=25% Similarity=0.303 Sum_probs=106.5
Q ss_pred EEEeCCCCCHHHHHHHHHcCccc-ccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchhh----
Q 000728 798 CIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN---- 872 (1326)
Q Consensus 798 ~IlGhvdaGKTTLLd~L~~~~v~-~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~~---- 872 (1326)
+|+|++|+|||||+++|.+.+.. .....++|.......+.+ ....+.|||||||..+..
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~----------------~~~~~~i~DtpG~~~~~~~~~~ 64 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEW----------------GGREFILIDTGGIEPDDEGISK 64 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEE----------------CCeEEEEEECCCCCCchhHHHH
Confidence 58999999999999999977532 223344554433222221 224599999999988654
Q ss_pred ----hhhhccCccceeEEeeccccCCchhHHHHHHHHHhcCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHHHH
Q 000728 873 ----LRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEF 948 (1326)
Q Consensus 873 ----lr~rg~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~e~ 948 (1326)
.+..++..+|++|||+|+.++....+..++.+++..++|+|+|+||+|+... ..
T Consensus 65 ~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~-------~~--------------- 122 (157)
T cd01894 65 EIREQAELAIEEADVILFVVDGREGLTPADEEIAKYLRKSKKPVILVVNKVDNIKE-------ED--------------- 122 (157)
T ss_pred HHHHHHHHHHHhCCEEEEEEeccccCCccHHHHHHHHHhcCCCEEEEEECcccCCh-------HH---------------
Confidence 3445678899999999999988888888888888889999999999998621 00
Q ss_pred HHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHH
Q 000728 949 NMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1326)
Q Consensus 949 ~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~ 1002 (1326)
....+...+ ..+++++||++|.||.+|+.+|+.+
T Consensus 123 ------~~~~~~~~~--------------~~~~~~~Sa~~~~gv~~l~~~l~~~ 156 (157)
T cd01894 123 ------EAAEFYSLG--------------FGEPIPISAEHGRGIGDLLDAILEL 156 (157)
T ss_pred ------HHHHHHhcC--------------CCCeEEEecccCCCHHHHHHHHHhh
Confidence 011121122 1268999999999999999998754
No 90
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.75 E-value=2.3e-17 Score=199.08 Aligned_cols=162 Identities=22% Similarity=0.297 Sum_probs=117.0
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCcc-cccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchh
Q 000728 793 RSPICCIMGHVDTGKTKLLDCIRGTNV-QEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 871 (1326)
Q Consensus 793 R~piV~IlGhvdaGKTTLLd~L~~~~v-~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~ 871 (1326)
+.+.|+|+|++++|||||+++|++... .....+|+|.+.....+.+. ...++||||||+..+.
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~----------------~~~~~liDT~G~~~~~ 234 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERN----------------GKKYLLIDTAGIRRKG 234 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEEC----------------CcEEEEEECCCccccc
Confidence 456799999999999999999998653 23455677765443333222 2359999999975543
Q ss_pred h----------hh-hhccCccceeEEeeccccCCchhHHHHHHHHHhcCCcEEEEEeccccccCcccCCCchHHHHHHHh
Q 000728 872 N----------LR-SRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQ 940 (1326)
Q Consensus 872 ~----------lr-~rg~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q 940 (1326)
. ++ ..+++.||++|||||+.+|++.++..++.++...++|+|||+||+|+... ..
T Consensus 235 ~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~------~~-------- 300 (429)
T TIGR03594 235 KVTEGVEKYSVLRTLKAIERADVVLLVLDATEGITEQDLRIAGLILEAGKALVIVVNKWDLVKD------EK-------- 300 (429)
T ss_pred cchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEECcccCCC------HH--------
Confidence 2 22 34688999999999999999999999999998899999999999998611 00
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHHHH
Q 000728 941 NTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1004 (1326)
Q Consensus 941 ~~~~~~e~~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~q 1004 (1326)
.+..+...+... +. .-..+++++|||++|.||.+|+.+|..++.
T Consensus 301 ----------~~~~~~~~~~~~-~~---------~~~~~~vi~~SA~~g~~v~~l~~~i~~~~~ 344 (429)
T TIGR03594 301 ----------TREEFKKELRRK-LP---------FLDFAPIVFISALTGQGVDKLLDAIDEVYE 344 (429)
T ss_pred ----------HHHHHHHHHHHh-cc---------cCCCCceEEEeCCCCCCHHHHHHHHHHHHH
Confidence 011112222111 00 013479999999999999999999887664
No 91
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.75 E-value=4.8e-18 Score=177.02 Aligned_cols=148 Identities=23% Similarity=0.298 Sum_probs=104.2
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchhhh-
Q 000728 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL- 873 (1326)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~~l- 873 (1326)
+.|+++|.+|+|||||+|+|++.+...+..+|+|.......+.+.. ..+.||||||..++...
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~----------------~~~~lvDlPG~ysl~~~s 64 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD----------------QQVELVDLPGIYSLSSKS 64 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT----------------EEEEEEE----SSSSSSS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC----------------ceEEEEECCCcccCCCCC
Confidence 3599999999999999999999998889999999887655554332 34999999996554221
Q ss_pred -----hhhc--cCccceeEEeeccccCCchhHHHHHHHHHhcCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHH
Q 000728 874 -----RSRG--SGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQN 946 (1326)
Q Consensus 874 -----r~rg--~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~ 946 (1326)
...+ ...+|++|+|+|+++ ..+....+.++...++|+|+|+||+|+.... ...
T Consensus 65 ~ee~v~~~~l~~~~~D~ii~VvDa~~--l~r~l~l~~ql~e~g~P~vvvlN~~D~a~~~----g~~-------------- 124 (156)
T PF02421_consen 65 EEERVARDYLLSEKPDLIIVVVDATN--LERNLYLTLQLLELGIPVVVVLNKMDEAERK----GIE-------------- 124 (156)
T ss_dssp HHHHHHHHHHHHTSSSEEEEEEEGGG--HHHHHHHHHHHHHTTSSEEEEEETHHHHHHT----TEE--------------
T ss_pred cHHHHHHHHHhhcCCCEEEEECCCCC--HHHHHHHHHHHHHcCCCEEEEEeCHHHHHHc----CCE--------------
Confidence 2223 357999999999988 3455667778888999999999999985210 000
Q ss_pred HHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHH
Q 000728 947 EFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLL 999 (1326)
Q Consensus 947 e~~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L 999 (1326)
.....+...| .+|+||+||++|.|+++|+..|
T Consensus 125 ---id~~~Ls~~L------------------g~pvi~~sa~~~~g~~~L~~~I 156 (156)
T PF02421_consen 125 ---IDAEKLSERL------------------GVPVIPVSARTGEGIDELKDAI 156 (156)
T ss_dssp ---E-HHHHHHHH------------------TS-EEEEBTTTTBTHHHHHHHH
T ss_pred ---ECHHHHHHHh------------------CCCEEEEEeCCCcCHHHHHhhC
Confidence 0011111111 2699999999999999998764
No 92
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.75 E-value=8.3e-18 Score=175.61 Aligned_cols=158 Identities=18% Similarity=0.204 Sum_probs=105.7
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchhhh
Q 000728 794 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL 873 (1326)
Q Consensus 794 ~piV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~~l 873 (1326)
...|+|+|+.|+|||||+++|.+..+.......++.++....+.+... ...++|||||||..|..+
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~--------------~~~l~i~D~~G~~~~~~~ 68 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGK--------------RVKLQIWDTAGQERFRTI 68 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCE--------------EEEEEEEECCChHHHHHH
Confidence 356999999999999999999877654433222322222222222110 024899999999999999
Q ss_pred hhhccCccceeEEeeccccCCchhHHHHH-HHHH---hcCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHHHHH
Q 000728 874 RSRGSGLCDIAILVVDIMHGLEPQTIESL-NLLK---MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 949 (1326)
Q Consensus 874 r~rg~~~aDiaILVVDa~~Gv~~QT~E~l-~~l~---~~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~e~~ 949 (1326)
+...++.+|++|||+|+++....+....| ..+. ..++|+|||+||+|+... +...
T Consensus 69 ~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~----~~~~----------------- 127 (165)
T cd01864 69 TQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQ----REVL----------------- 127 (165)
T ss_pred HHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccc----cccC-----------------
Confidence 99999999999999999886544443333 2222 346899999999998631 0000
Q ss_pred HHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHH
Q 000728 950 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1326)
Q Consensus 950 ~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~ 1002 (1326)
...+....... +...++++||++|.||.+++.+|...
T Consensus 128 --~~~~~~~~~~~--------------~~~~~~e~Sa~~~~~v~~~~~~l~~~ 164 (165)
T cd01864 128 --FEEACTLAEKN--------------GMLAVLETSAKESQNVEEAFLLMATE 164 (165)
T ss_pred --HHHHHHHHHHc--------------CCcEEEEEECCCCCCHHHHHHHHHHh
Confidence 01111111111 22478999999999999999998753
No 93
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.74 E-value=2e-17 Score=176.14 Aligned_cols=150 Identities=23% Similarity=0.341 Sum_probs=105.3
Q ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHcCcc--cccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCc
Q 000728 791 NLRSPICCIMGHVDTGKTKLLDCIRGTNV--QEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHE 868 (1326)
Q Consensus 791 ~~R~piV~IlGhvdaGKTTLLd~L~~~~v--~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe 868 (1326)
..+.+.|+|||++|+|||||+++|++..+ ......|.|+++..+.+. ..++||||||+.
T Consensus 15 ~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~-------------------~~~~liDtpG~~ 75 (179)
T TIGR03598 15 PDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVN-------------------DGFRLVDLPGYG 75 (179)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeC-------------------CcEEEEeCCCCc
Confidence 35677899999999999999999998752 223345556554322211 249999999963
Q ss_pred ----------chhhhhhhcc---CccceeEEeeccccCCchhHHHHHHHHHhcCCcEEEEEeccccccCcccCCCchHHH
Q 000728 869 ----------SFTNLRSRGS---GLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVK 935 (1326)
Q Consensus 869 ----------~F~~lr~rg~---~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~vP~IVvINKiD~~~~w~~~~~a~~~~ 935 (1326)
.|..+...++ ..+|++|+|+|+++++..++..+++++...++|+|||+||+|+... ..
T Consensus 76 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~------~~--- 146 (179)
T TIGR03598 76 YAKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPLKELDLEMLEWLRERGIPVLIVLTKADKLKK------SE--- 146 (179)
T ss_pred cccCChhHHHHHHHHHHHHHHhChhhcEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCCH------HH---
Confidence 3444443333 3578999999999999999998889888889999999999998621 11
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChh
Q 000728 936 AIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIP 993 (1326)
Q Consensus 936 ~L~~q~~~~~~e~~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~ 993 (1326)
+...+..+...|... +..+++|+|||++|+||.
T Consensus 147 ------------~~~~~~~i~~~l~~~-------------~~~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 147 ------------LNKQLKKIKKALKKD-------------ADDPSVQLFSSLKKTGID 179 (179)
T ss_pred ------------HHHHHHHHHHHHhhc-------------cCCCceEEEECCCCCCCC
Confidence 111223333344332 233589999999999984
No 94
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.74 E-value=2.7e-17 Score=171.66 Aligned_cols=152 Identities=20% Similarity=0.204 Sum_probs=97.1
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchhh--
Q 000728 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN-- 872 (1326)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~~-- 872 (1326)
|+|+|+|++|+|||||+++|++..+.....++.|..+....+.+ ....|+||||||+..+..
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~----------------~~~~~~i~Dt~G~~~~~~~~ 64 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDY----------------KYLRWQVIDTPGLLDRPLEE 64 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEcc----------------CceEEEEEECCCcCCccccC
Confidence 67999999999999999999987764433344443332222211 123599999999853210
Q ss_pred -------hhhhccCccceeEEeeccccCCc---hhHHHHHHHHHhc--CCcEEEEEeccccccCcccCCCchHHHHHHHh
Q 000728 873 -------LRSRGSGLCDIAILVVDIMHGLE---PQTIESLNLLKMR--NTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQ 940 (1326)
Q Consensus 873 -------lr~rg~~~aDiaILVVDa~~Gv~---~QT~E~l~~l~~~--~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q 940 (1326)
........+|++|||+|+++... ......+..+... ++|+|||+||+|+... ..+
T Consensus 65 ~~~~~~~~~~~~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~------~~~------- 131 (168)
T cd01897 65 RNTIEMQAITALAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLLTF------EDL------- 131 (168)
T ss_pred CchHHHHHHHHHHhccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccCch------hhH-------
Confidence 11111234689999999987432 2223445555544 7999999999998621 000
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHH
Q 000728 941 NTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1326)
Q Consensus 941 ~~~~~~e~~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~ 1002 (1326)
.. ...+... ..+++++|||++|.||.+|+.+|...
T Consensus 132 ------------~~-~~~~~~~--------------~~~~~~~~Sa~~~~gi~~l~~~l~~~ 166 (168)
T cd01897 132 ------------SE-IEEEEEL--------------EGEEVLKISTLTEEGVDEVKNKACEL 166 (168)
T ss_pred ------------HH-HHHhhhh--------------ccCceEEEEecccCCHHHHHHHHHHH
Confidence 00 1111111 23589999999999999999998764
No 95
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.74 E-value=4.8e-17 Score=196.71 Aligned_cols=161 Identities=23% Similarity=0.336 Sum_probs=116.7
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCc-ccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcc--
Q 000728 793 RSPICCIMGHVDTGKTKLLDCIRGTN-VQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES-- 869 (1326)
Q Consensus 793 R~piV~IlGhvdaGKTTLLd~L~~~~-v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~-- 869 (1326)
..+.|+|+|++|+|||||+++|++.. +..+..+|+|.+.....+.+. ...++||||||+..
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~----------------~~~~~lvDT~G~~~~~ 235 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERD----------------GQKYTLIDTAGIRRKG 235 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEEC----------------CeeEEEEECCCCCCCc
Confidence 35679999999999999999999765 344556777776544433322 23589999999643
Q ss_pred --------hhhhh-hhccCccceeEEeeccccCCchhHHHHHHHHHhcCCcEEEEEeccccccCcccCCCchHHHHHHHh
Q 000728 870 --------FTNLR-SRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQ 940 (1326)
Q Consensus 870 --------F~~lr-~rg~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q 940 (1326)
|..++ .++++.||++|||||+..|++.|+..++.++...++|+|||+||+|+... .. +
T Consensus 236 ~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~~~~~~ivv~NK~Dl~~~-------~~---~--- 302 (435)
T PRK00093 236 KVTEGVEKYSVIRTLKAIERADVVLLVIDATEGITEQDLRIAGLALEAGRALVIVVNKWDLVDE-------KT---M--- 302 (435)
T ss_pred chhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCcEEEEEECccCCCH-------HH---H---
Confidence 23233 35788999999999999999999999999998899999999999998621 00 0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHHHH
Q 000728 941 NTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1004 (1326)
Q Consensus 941 ~~~~~~e~~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~q 1004 (1326)
..+ ...+...|.. -..++++++||++|.||.+|+..+..++.
T Consensus 303 -----~~~---~~~~~~~l~~--------------~~~~~i~~~SA~~~~gv~~l~~~i~~~~~ 344 (435)
T PRK00093 303 -----EEF---KKELRRRLPF--------------LDYAPIVFISALTGQGVDKLLEAIDEAYE 344 (435)
T ss_pred -----HHH---HHHHHHhccc--------------ccCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 001 1111111111 13479999999999999999998876553
No 96
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.73 E-value=1.7e-17 Score=175.23 Aligned_cols=154 Identities=23% Similarity=0.273 Sum_probs=101.9
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchhh
Q 000728 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 872 (1326)
Q Consensus 793 R~piV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~~ 872 (1326)
+.+.|+|+|++++|||||+++|.+..+.. ++.++|.....+ .+....+.||||||+..|..
T Consensus 13 ~~~kv~ivG~~~~GKTsL~~~l~~~~~~~-----~~~t~g~~~~~~--------------~~~~~~l~l~D~~G~~~~~~ 73 (173)
T cd04154 13 REMRILILGLDNAGKTTILKKLLGEDIDT-----ISPTLGFQIKTL--------------EYEGYKLNIWDVGGQKTLRP 73 (173)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCC-----cCCccccceEEE--------------EECCEEEEEEECCCCHHHHH
Confidence 45679999999999999999998764321 222233111110 01123489999999999999
Q ss_pred hhhhccCccceeEEeeccccCCchh-HHHHHHHH----HhcCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHHH
Q 000728 873 LRSRGSGLCDIAILVVDIMHGLEPQ-TIESLNLL----KMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNE 947 (1326)
Q Consensus 873 lr~rg~~~aDiaILVVDa~~Gv~~Q-T~E~l~~l----~~~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~e 947 (1326)
++..++..+|++|||+|+++.-... ....+..+ ...++|+|||+||+|+... ..
T Consensus 74 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~------~~--------------- 132 (173)
T cd04154 74 YWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGA------LS--------------- 132 (173)
T ss_pred HHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccC------CC---------------
Confidence 9999999999999999998752211 12222222 2257899999999998621 00
Q ss_pred HHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHH
Q 000728 948 FNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLV 1000 (1326)
Q Consensus 948 ~~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~ 1000 (1326)
...+...+....+. ...+++|+|||++|.||.+++.+|+
T Consensus 133 ----~~~~~~~~~~~~~~----------~~~~~~~~~Sa~~g~gi~~l~~~l~ 171 (173)
T cd04154 133 ----EEEIREALELDKIS----------SHHWRIQPCSAVTGEGLLQGIDWLV 171 (173)
T ss_pred ----HHHHHHHhCccccC----------CCceEEEeccCCCCcCHHHHHHHHh
Confidence 01111122111110 1347899999999999999999875
No 97
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.73 E-value=1.9e-17 Score=171.76 Aligned_cols=154 Identities=24% Similarity=0.281 Sum_probs=108.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchhhhhh
Q 000728 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1326)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~~lr~ 875 (1326)
.|+|||++++|||||+++|++..+.....+.++..+....+.... ....|.|||||||..|..++.
T Consensus 2 ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~l~l~D~~G~~~~~~~~~ 67 (161)
T cd04113 2 KFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGG--------------KRVKLQIWDTAGQERFRSVTR 67 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECC--------------EEEEEEEEECcchHHHHHhHH
Confidence 589999999999999999998876554444444433333332221 012489999999999999999
Q ss_pred hccCccceeEEeeccccCCchhHHHHH----HHHHhcCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000728 876 RGSGLCDIAILVVDIMHGLEPQTIESL----NLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1326)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E~l----~~l~~~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~e~~~~ 951 (1326)
.+++.+|++|||+|++++...+....| ..+...++|+|||+||+|+... +..+
T Consensus 68 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~----~~~~------------------- 124 (161)
T cd04113 68 SYYRGAAGALLVYDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQ----REVT------------------- 124 (161)
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchh----ccCC-------------------
Confidence 999999999999999986655544443 2233457899999999998621 0000
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHH
Q 000728 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1001 (1326)
Q Consensus 952 l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~ 1001 (1326)
...+...+... + ++++++||++|.||.++|.+|+.
T Consensus 125 ~~~~~~~~~~~-------------~--~~~~~~Sa~~~~~i~~~~~~~~~ 159 (161)
T cd04113 125 FLEASRFAQEN-------------G--LLFLETSALTGENVEEAFLKCAR 159 (161)
T ss_pred HHHHHHHHHHc-------------C--CEEEEEECCCCCCHHHHHHHHHH
Confidence 01111122211 1 58999999999999999999875
No 98
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.73 E-value=9.1e-18 Score=175.07 Aligned_cols=153 Identities=20% Similarity=0.286 Sum_probs=97.7
Q ss_pred EEEEeCCCCCHHHHHHHHHcCccc-cc-----ccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcch
Q 000728 797 CCIMGHVDTGKTKLLDCIRGTNVQ-EG-----EAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF 870 (1326)
Q Consensus 797 V~IlGhvdaGKTTLLd~L~~~~v~-~g-----e~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F 870 (1326)
|+|||++|+|||||+++|.+.... .+ ..+++...++ .+. +....++|||||||..|
T Consensus 2 i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~--~~~----------------~~~~~~~l~Dt~G~~~~ 63 (167)
T cd04160 2 VLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIG--TIE----------------VGNARLKFWDLGGQESL 63 (167)
T ss_pred EEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceE--EEE----------------ECCEEEEEEECCCChhh
Confidence 899999999999999999754321 00 0111111111 111 12245999999999999
Q ss_pred hhhhhhccCccceeEEeeccccCCch-hHHHHHHHHH----hcCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHH
Q 000728 871 TNLRSRGSGLCDIAILVVDIMHGLEP-QTIESLNLLK----MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQ 945 (1326)
Q Consensus 871 ~~lr~rg~~~aDiaILVVDa~~Gv~~-QT~E~l~~l~----~~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~ 945 (1326)
..++..++..+|++|||||+.+.-.. .....+..+. ..++|+||++||+|+...+ ..
T Consensus 64 ~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~------~~------------ 125 (167)
T cd04160 64 RSLWDKYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDAL------SV------------ 125 (167)
T ss_pred HHHHHHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCC------CH------------
Confidence 99999999999999999999764221 1222222222 2479999999999986311 00
Q ss_pred HHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHH
Q 000728 946 NEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLV 1000 (1326)
Q Consensus 946 ~e~~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~ 1000 (1326)
..+...+....-. .....++++++||++|.||.+++.+|.
T Consensus 126 -------~~~~~~~~~~~~~--------~~~~~~~~~~~Sa~~g~gv~e~~~~l~ 165 (167)
T cd04160 126 -------EEIKEVFQDKAEE--------IGRRDCLVLPVSALEGTGVREGIEWLV 165 (167)
T ss_pred -------HHHHHHhcccccc--------ccCCceEEEEeeCCCCcCHHHHHHHHh
Confidence 0111111111000 001247899999999999999999886
No 99
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.73 E-value=1.5e-17 Score=194.57 Aligned_cols=152 Identities=24% Similarity=0.355 Sum_probs=120.5
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCccc-ccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchh--
Q 000728 795 PICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT-- 871 (1326)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~~~v~-~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~-- 871 (1326)
|+|+|+|.+|+|||||+|+|+++... ....+|+|.+--..... |....+++|||+|.....
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~----------------~~~~~f~lIDTgGl~~~~~~ 67 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAE----------------WLGREFILIDTGGLDDGDED 67 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeE----------------EcCceEEEEECCCCCcCCch
Confidence 88999999999999999999998765 35567888775433333 333469999999976432
Q ss_pred ---h----hhhhccCccceeEEeeccccCCchhHHHHHHHHHhcCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHH
Q 000728 872 ---N----LRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDV 944 (1326)
Q Consensus 872 ---~----lr~rg~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~ 944 (1326)
. ....++..+|++|||||+..|++++......+|+..+.|+|+|+||+|-...
T Consensus 68 ~l~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~~~kpviLvvNK~D~~~~-------------------- 127 (444)
T COG1160 68 ELQELIREQALIAIEEADVILFVVDGREGITPADEEIAKILRRSKKPVILVVNKIDNLKA-------------------- 127 (444)
T ss_pred HHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEEcccCchh--------------------
Confidence 2 2335678899999999999999999999999999888999999999996411
Q ss_pred HHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHHHH
Q 000728 945 QNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1004 (1326)
Q Consensus 945 ~~e~~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~q 1004 (1326)
......+..+|+ -.++||||.+|.||.+|++.++.+++
T Consensus 128 --------e~~~~efyslG~--------------g~~~~ISA~Hg~Gi~dLld~v~~~l~ 165 (444)
T COG1160 128 --------EELAYEFYSLGF--------------GEPVPISAEHGRGIGDLLDAVLELLP 165 (444)
T ss_pred --------hhhHHHHHhcCC--------------CCceEeehhhccCHHHHHHHHHhhcC
Confidence 122334555554 37899999999999999999998875
No 100
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.73 E-value=4e-17 Score=177.04 Aligned_cols=160 Identities=19% Similarity=0.122 Sum_probs=108.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchhhhhh
Q 000728 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1326)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~~lr~ 875 (1326)
.|+|||.+|+|||||+++|++..+.....+++..++....+.+.. .....|.||||||++.|..++.
T Consensus 2 KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~-------------~~~~~l~l~Dt~G~~~~~~~~~ 68 (201)
T cd04107 2 KVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDP-------------NTVVRLQLWDIAGQERFGGMTR 68 (201)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECC-------------CCEEEEEEEECCCchhhhhhHH
Confidence 589999999999999999998776544334343333222222210 0012489999999999999999
Q ss_pred hccCccceeEEeeccccCCchhHHHHH-HHHH-------hcCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHHH
Q 000728 876 RGSGLCDIAILVVDIMHGLEPQTIESL-NLLK-------MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNE 947 (1326)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E~l-~~l~-------~~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~e 947 (1326)
.+++.+|++|||+|+++....+....| ..+. ..++|+|||+||+|+...+ ..
T Consensus 69 ~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~----~~---------------- 128 (201)
T cd04107 69 VYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRL----AK---------------- 128 (201)
T ss_pred HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCccccc----cc----------------
Confidence 999999999999999875443333322 1121 2468999999999985210 00
Q ss_pred HHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHHHHH
Q 000728 948 FNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQK 1005 (1326)
Q Consensus 948 ~~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~q~ 1005 (1326)
....+...+...+ .+++++|||++|.||.++|.+|+..+..
T Consensus 129 ---~~~~~~~~~~~~~--------------~~~~~e~Sak~~~~v~e~f~~l~~~l~~ 169 (201)
T cd04107 129 ---DGEQMDQFCKENG--------------FIGWFETSAKEGINIEEAMRFLVKNILA 169 (201)
T ss_pred ---CHHHHHHHHHHcC--------------CceEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 0112222222222 2479999999999999999999876643
No 101
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.73 E-value=2.4e-17 Score=170.60 Aligned_cols=155 Identities=19% Similarity=0.182 Sum_probs=110.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchhhhhh
Q 000728 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1326)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~~lr~ 875 (1326)
.|+|+|++++|||||+++|++..+.....++++.++....+.+.... ..++||||||+..|..++.
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~l~~~D~~G~~~~~~~~~ 67 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKT--------------VRLQLWDTAGQERFRSLIP 67 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEE--------------EEEEEEECCCcHHHHHHHH
Confidence 48999999999999999999988876666666666544444332110 1389999999999999999
Q ss_pred hccCccceeEEeeccccCCchhHHHHH-HHHH-hc--CCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000728 876 RGSGLCDIAILVVDIMHGLEPQTIESL-NLLK-MR--NTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1326)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E~l-~~l~-~~--~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~e~~~~ 951 (1326)
..+..+|++|||+|+++..+.+....| ..+. .. ++|+|+|+||+|+... +....
T Consensus 68 ~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~----~~~~~------------------ 125 (161)
T cd01861 68 SYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDK----RQVST------------------ 125 (161)
T ss_pred HHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhcccc----CccCH------------------
Confidence 999999999999999876554444433 2222 23 4899999999998421 00000
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHH
Q 000728 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1326)
Q Consensus 952 l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~ 1002 (1326)
..+....... .++++++||.+|.||.+|+.+|...
T Consensus 126 -~~~~~~~~~~---------------~~~~~~~Sa~~~~~v~~l~~~i~~~ 160 (161)
T cd01861 126 -EEGEKKAKEL---------------NAMFIETSAKAGHNVKELFRKIASA 160 (161)
T ss_pred -HHHHHHHHHh---------------CCEEEEEeCCCCCCHHHHHHHHHHh
Confidence 0111111111 2589999999999999999998753
No 102
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.73 E-value=2.6e-17 Score=170.51 Aligned_cols=156 Identities=17% Similarity=0.149 Sum_probs=105.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchhhhhh
Q 000728 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1326)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~~lr~ 875 (1326)
.|+|+|+.++|||||+++|++..+.....++++.++....+.+... .....++||||||++.|..++.
T Consensus 2 kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~------------~~~~~~~i~D~~G~~~~~~~~~ 69 (162)
T cd04106 2 KVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQS------------DEDVRLMLWDTAGQEEFDAITK 69 (162)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCC------------CCEEEEEEeeCCchHHHHHhHH
Confidence 5999999999999999999987665444444443332221111100 0112489999999999999999
Q ss_pred hccCccceeEEeeccccCCchhHHHHHHH-HH--hcCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHHHHHHHH
Q 000728 876 RGSGLCDIAILVVDIMHGLEPQTIESLNL-LK--MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRL 952 (1326)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E~l~~-l~--~~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~e~~~~l 952 (1326)
.+++.+|++|||+|+++....+....|.. +. ..++|+|||+||+|+... ..+ ..
T Consensus 70 ~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~~~------~~v-----------------~~ 126 (162)
T cd04106 70 AYYRGAQACILVFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLLDQ------AVI-----------------TN 126 (162)
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhcccc------cCC-----------------CH
Confidence 99999999999999987544444444332 22 237999999999998621 000 00
Q ss_pred HHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHH
Q 000728 953 VQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1001 (1326)
Q Consensus 953 ~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~ 1001 (1326)
..+....... .++++++||++|.||.+|+.+|..
T Consensus 127 ~~~~~~~~~~---------------~~~~~~~Sa~~~~~v~~l~~~l~~ 160 (162)
T cd04106 127 EEAEALAKRL---------------QLPLFRTSVKDDFNVTELFEYLAE 160 (162)
T ss_pred HHHHHHHHHc---------------CCeEEEEECCCCCCHHHHHHHHHH
Confidence 1111111111 148999999999999999998864
No 103
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.73 E-value=4.3e-17 Score=169.20 Aligned_cols=161 Identities=20% Similarity=0.284 Sum_probs=108.3
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCccc-ccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcch-
Q 000728 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF- 870 (1326)
Q Consensus 793 R~piV~IlGhvdaGKTTLLd~L~~~~v~-~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F- 870 (1326)
+++.|+|+|++|+|||||+++|++..+. .+..+++|.......+.. ....++||||||+..+
T Consensus 1 ~~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~iiDtpG~~~~~ 64 (174)
T cd01895 1 DPIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEY----------------DGKKYTLIDTAGIRRKG 64 (174)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEE----------------CCeeEEEEECCCCcccc
Confidence 3567999999999999999999876532 233344443332222221 2235899999997543
Q ss_pred ---------hhhh-hhccCccceeEEeeccccCCchhHHHHHHHHHhcCCcEEEEEeccccccCcccCCCchHHHHHHHh
Q 000728 871 ---------TNLR-SRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQ 940 (1326)
Q Consensus 871 ---------~~lr-~rg~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q 940 (1326)
..++ ..++..+|++|+|+|+.++...+....+..+...+.|+||++||+|+.... ..
T Consensus 65 ~~~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~-----~~-------- 131 (174)
T cd01895 65 KVEEGIEKYSVLRTLKAIERADVVLLVIDATEGITEQDLRIAGLILEEGKALVIVVNKWDLVEKD-----SK-------- 131 (174)
T ss_pred chhccHHHHHHHHHHHHHhhcCeEEEEEeCCCCcchhHHHHHHHHHhcCCCEEEEEeccccCCcc-----HH--------
Confidence 2121 235678999999999999988888888888887889999999999986310 00
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHH
Q 000728 941 NTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1326)
Q Consensus 941 ~~~~~~e~~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~ 1002 (1326)
.+..+...+... +. ....++++++||++|.||..++..+...
T Consensus 132 ----------~~~~~~~~~~~~-~~---------~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 132 ----------TMKEFKKEIRRK-LP---------FLDYAPIVFISALTGQGVDKLFDAIDEV 173 (174)
T ss_pred ----------HHHHHHHHHHhh-cc---------cccCCceEEEeccCCCCHHHHHHHHHHh
Confidence 011111222211 00 0123689999999999999999887653
No 104
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.73 E-value=4e-17 Score=168.24 Aligned_cols=154 Identities=17% Similarity=0.140 Sum_probs=101.6
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchhhhh
Q 000728 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1326)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~~lr 874 (1326)
+.|+|+|.+|+|||||+++|.+..+.....+.+.... ...+.... ....+.||||||++.|..++
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~--------------~~~~~~i~Dt~G~~~~~~l~ 66 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDG--------------ETCLLDILDTAGQEEYSAMR 66 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheE-EEEEEECC--------------EEEEEEEEECCCCcchHHHH
Confidence 3599999999999999999998766443322222111 11111110 01237899999999999999
Q ss_pred hhccCccceeEEeeccccCCchhHHHHH-HHHH----hcCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHHHHH
Q 000728 875 SRGSGLCDIAILVVDIMHGLEPQTIESL-NLLK----MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 949 (1326)
Q Consensus 875 ~rg~~~aDiaILVVDa~~Gv~~QT~E~l-~~l~----~~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~e~~ 949 (1326)
..+++.+|++|+|+|+++....+....| ..+. ..++|+|||+||+|+... ...
T Consensus 67 ~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~-----~~~----------------- 124 (162)
T cd04138 67 DQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAAR-----TVS----------------- 124 (162)
T ss_pred HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc-----eec-----------------
Confidence 9999999999999999874433333222 2222 247899999999998621 000
Q ss_pred HHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHH
Q 000728 950 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1326)
Q Consensus 950 ~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~ 1002 (1326)
...+....... .++++++||++|.||.++|.+|+..
T Consensus 125 --~~~~~~~~~~~---------------~~~~~~~Sa~~~~gi~~l~~~l~~~ 160 (162)
T cd04138 125 --SRQGQDLAKSY---------------GIPYIETSAKTRQGVEEAFYTLVRE 160 (162)
T ss_pred --HHHHHHHHHHh---------------CCeEEEecCCCCCCHHHHHHHHHHH
Confidence 00111111111 2479999999999999999998754
No 105
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.73 E-value=3.4e-17 Score=169.81 Aligned_cols=156 Identities=15% Similarity=0.095 Sum_probs=102.2
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchhhhh
Q 000728 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1326)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~~lr 874 (1326)
..|+|+|++++|||||+++|++..+.....+.+...+ ...+.+.. ....++|||||||..|..++
T Consensus 3 ~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~--------------~~~~~~i~Dt~G~~~~~~~~ 67 (164)
T cd04145 3 YKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSY-TKQCEIDG--------------QWAILDILDTAGQEEFSAMR 67 (164)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceE-EEEEEECC--------------EEEEEEEEECCCCcchhHHH
Confidence 4699999999999999999987665432222221111 11111110 11248899999999999999
Q ss_pred hhccCccceeEEeeccccCCchhHHHHH-HHH----HhcCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHHHHH
Q 000728 875 SRGSGLCDIAILVVDIMHGLEPQTIESL-NLL----KMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 949 (1326)
Q Consensus 875 ~rg~~~aDiaILVVDa~~Gv~~QT~E~l-~~l----~~~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~e~~ 949 (1326)
..+++.+|++|||+|+++....+....| ..+ ...++|+|||+||+|+...+ ...
T Consensus 68 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~----~~~----------------- 126 (164)
T cd04145 68 EQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQR----KVS----------------- 126 (164)
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccc----eec-----------------
Confidence 9999999999999999875433222222 222 22478999999999986311 000
Q ss_pred HHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHHH
Q 000728 950 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1326)
Q Consensus 950 ~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1326)
.......+... .++++++||++|.||.++|..|+..+
T Consensus 127 --~~~~~~~~~~~---------------~~~~~~~Sa~~~~~i~~l~~~l~~~~ 163 (164)
T cd04145 127 --REEGQELARKL---------------KIPYIETSAKDRLNVDKAFHDLVRVI 163 (164)
T ss_pred --HHHHHHHHHHc---------------CCcEEEeeCCCCCCHHHHHHHHHHhh
Confidence 00111111111 14789999999999999999987654
No 106
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.73 E-value=3.9e-17 Score=170.69 Aligned_cols=158 Identities=19% Similarity=0.183 Sum_probs=105.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchhhhhh
Q 000728 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1326)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~~lr~ 875 (1326)
.|+|+|++++|||||+++|++..+.......++.++....+.+.. ....++|||||||..|..++.
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~--------------~~~~~~~~D~~g~~~~~~~~~ 67 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDD--------------KLVTLQIWDTAGQERFQSLGV 67 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECC--------------EEEEEEEEeCCChHHHHhHHH
Confidence 599999999999999999998876544333333222211111111 012378999999999999999
Q ss_pred hccCccceeEEeeccccCCchhHHHHHHH--HHh------cCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHHH
Q 000728 876 RGSGLCDIAILVVDIMHGLEPQTIESLNL--LKM------RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNE 947 (1326)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E~l~~--l~~------~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~e 947 (1326)
.+++.||++|+|+|+++....+....|.. +.. .++|+|||+||+|+... .. +
T Consensus 68 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~-----~~-~-------------- 127 (172)
T cd01862 68 AFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEK-----RQ-V-------------- 127 (172)
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccc-----cc-c--------------
Confidence 99999999999999987544333333321 221 26899999999999620 00 0
Q ss_pred HHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHHHH
Q 000728 948 FNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1004 (1326)
Q Consensus 948 ~~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~q 1004 (1326)
....+...+... +.++++++||.+|.||..++.+|...+.
T Consensus 128 ---~~~~~~~~~~~~--------------~~~~~~~~Sa~~~~gv~~l~~~i~~~~~ 167 (172)
T cd01862 128 ---STKKAQQWCQSN--------------GNIPYFETSAKEAINVEQAFETIARKAL 167 (172)
T ss_pred ---CHHHHHHHHHHc--------------CCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 001111122222 2368999999999999999999886543
No 107
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.73 E-value=3.5e-17 Score=169.66 Aligned_cols=155 Identities=20% Similarity=0.197 Sum_probs=106.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchhhhhh
Q 000728 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1326)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~~lr~ 875 (1326)
.|+|+|++++|||||+++|++..+.....+.++.+++...+.... ....++||||||+..|..++.
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~--------------~~~~l~i~Dt~G~~~~~~~~~ 67 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRN--------------KEVRVNFFDLSGHPEYLEVRN 67 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECC--------------eEEEEEEEECCccHHHHHHHH
Confidence 599999999999999999998876654444444444333332221 012489999999999999999
Q ss_pred hccCccceeEEeeccccCCchhHHHHHH-HHHh--------cCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHH
Q 000728 876 RGSGLCDIAILVVDIMHGLEPQTIESLN-LLKM--------RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQN 946 (1326)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E~l~-~l~~--------~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~ 946 (1326)
.+++.+|++|||+|+++....+....|. .+.. .+.|+|+|+||+|+... ....
T Consensus 68 ~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~----~~~~-------------- 129 (168)
T cd04119 68 EFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKH----RAVS-------------- 129 (168)
T ss_pred HHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccc----cccC--------------
Confidence 9999999999999998754433333332 2211 35899999999998521 0000
Q ss_pred HHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHH
Q 000728 947 EFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1326)
Q Consensus 947 e~~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~ 1002 (1326)
.......+... .++++++||++|.||.+++.+|+..
T Consensus 130 -----~~~~~~~~~~~---------------~~~~~~~Sa~~~~gi~~l~~~l~~~ 165 (168)
T cd04119 130 -----EDEGRLWAESK---------------GFKYFETSACTGEGVNEMFQTLFSS 165 (168)
T ss_pred -----HHHHHHHHHHc---------------CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 00111111111 1579999999999999999998754
No 108
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.72 E-value=4e-17 Score=174.57 Aligned_cols=163 Identities=17% Similarity=0.145 Sum_probs=104.2
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchhhh
Q 000728 794 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL 873 (1326)
Q Consensus 794 ~piV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~~l 873 (1326)
+..|+|||+.|+|||||+++|++..+... .+.++..+....+... ......|+||||||++.|..+
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~-------------~~~~~~l~l~Dt~G~~~~~~~ 68 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLG-------------NSKGITFHFWDVGGQEKLRPL 68 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeecc-------------CCCceEEEEEECCCcHhHHHH
Confidence 45799999999999999999987665422 2211111111111110 011134899999999999999
Q ss_pred hhhccCccceeEEeeccccCCchhHHH-----HHHHHHhcCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHHHH
Q 000728 874 RSRGSGLCDIAILVVDIMHGLEPQTIE-----SLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEF 948 (1326)
Q Consensus 874 r~rg~~~aDiaILVVDa~~Gv~~QT~E-----~l~~l~~~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~e~ 948 (1326)
+..+++.||++|||||+++.-...... ++......++|+|||+||+|+...+ .
T Consensus 69 ~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~------~---------------- 126 (183)
T cd04152 69 WKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNAL------S---------------- 126 (183)
T ss_pred HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccC------C----------------
Confidence 999999999999999998743222221 1122233578999999999985210 0
Q ss_pred HHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHHHH
Q 000728 949 NMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1004 (1326)
Q Consensus 949 ~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~q 1004 (1326)
...+...+....+. ....+++++|||++|.||.+|+.+|+..+.
T Consensus 127 ---~~~~~~~~~~~~~~---------~~~~~~~~~~SA~~~~gi~~l~~~l~~~l~ 170 (183)
T cd04152 127 ---VSEVEKLLALHELS---------ASTPWHVQPACAIIGEGLQEGLEKLYEMIL 170 (183)
T ss_pred ---HHHHHHHhCccccC---------CCCceEEEEeecccCCCHHHHHHHHHHHHH
Confidence 01111111101110 012367999999999999999999987664
No 109
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.72 E-value=4e-17 Score=170.60 Aligned_cols=158 Identities=18% Similarity=0.147 Sum_probs=106.8
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchhh
Q 000728 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 872 (1326)
Q Consensus 793 R~piV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~~ 872 (1326)
+.+.|+|+|+.|+|||||+++|....+..+...+++.+.....+.+... ...+.|||||||..|..
T Consensus 6 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~--------------~~~~~~~D~~g~~~~~~ 71 (169)
T cd04114 6 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGE--------------KIKLQIWDTAGQERFRS 71 (169)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCE--------------EEEEEEEECCCcHHHHH
Confidence 3466999999999999999999876665443333333322222222110 02388999999999999
Q ss_pred hhhhccCccceeEEeeccccCCchhHHHHH----HHHHhcCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHHHH
Q 000728 873 LRSRGSGLCDIAILVVDIMHGLEPQTIESL----NLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEF 948 (1326)
Q Consensus 873 lr~rg~~~aDiaILVVDa~~Gv~~QT~E~l----~~l~~~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~e~ 948 (1326)
++..++..+|++|+|+|+.++........| ..+...++|+|+|+||+|+... ..+.
T Consensus 72 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~------~~i~-------------- 131 (169)
T cd04114 72 ITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAER------REVS-------------- 131 (169)
T ss_pred HHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccc------cccC--------------
Confidence 999999999999999999876544333333 3333447999999999998531 1100
Q ss_pred HHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHH
Q 000728 949 NMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1326)
Q Consensus 949 ~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~ 1002 (1326)
..+...+... ..++++++||++|.|+.++|.+|...
T Consensus 132 ----~~~~~~~~~~--------------~~~~~~~~Sa~~~~gv~~l~~~i~~~ 167 (169)
T cd04114 132 ----QQRAEEFSDA--------------QDMYYLETSAKESDNVEKLFLDLACR 167 (169)
T ss_pred ----HHHHHHHHHH--------------cCCeEEEeeCCCCCCHHHHHHHHHHH
Confidence 0011111111 12579999999999999999998754
No 110
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.72 E-value=6.5e-17 Score=176.30 Aligned_cols=157 Identities=20% Similarity=0.210 Sum_probs=108.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchhhhhh
Q 000728 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1326)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~~lr~ 875 (1326)
.|+|||..|+|||||+.+|....+......+++.++....+.+... ...|+||||+|++.|..++.
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~--------------~v~l~iwDtaGqe~~~~l~~ 67 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGK--------------KIRLQIWDTAGQERFNSITS 67 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCE--------------EEEEEEEeCCCchhhHHHHH
Confidence 4899999999999999999988776544444444433222222210 12489999999999999999
Q ss_pred hccCccceeEEeeccccCCchhHHHHHH-HHH---hcCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000728 876 RGSGLCDIAILVVDIMHGLEPQTIESLN-LLK---MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1326)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E~l~-~l~---~~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~e~~~~ 951 (1326)
.+++.+|++|||+|+++....+....|. .+. ..++|+|||+||+|+...+ .+.
T Consensus 68 ~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~------~v~----------------- 124 (202)
T cd04120 68 AYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDR------EIS----------------- 124 (202)
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECccccccc------ccC-----------------
Confidence 9999999999999999865555544443 222 2368999999999985211 000
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHHH
Q 000728 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1326)
Q Consensus 952 l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1326)
......+... + ..+.++.|||++|.||.++|.+|+..+
T Consensus 125 -~~~~~~~a~~-~------------~~~~~~etSAktg~gV~e~F~~l~~~~ 162 (202)
T cd04120 125 -RQQGEKFAQQ-I------------TGMRFCEASAKDNFNVDEIFLKLVDDI 162 (202)
T ss_pred -HHHHHHHHHh-c------------CCCEEEEecCCCCCCHHHHHHHHHHHH
Confidence 0000111111 0 125799999999999999999988654
No 111
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.72 E-value=5.7e-17 Score=167.89 Aligned_cols=156 Identities=19% Similarity=0.156 Sum_probs=108.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchhhhhh
Q 000728 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1326)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~~lr~ 875 (1326)
.|+|||++|+|||||+++|++..+.....+.++.++....+.+... ...|.||||||+..|..++.
T Consensus 2 kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~l~D~~G~~~~~~~~~ 67 (164)
T smart00175 2 KIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGK--------------RVKLQIWDTAGQERFRSITS 67 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCE--------------EEEEEEEECCChHHHHHHHH
Confidence 5999999999999999999988775554455554443333332210 02488999999999999999
Q ss_pred hccCccceeEEeeccccCCchhHHHHH-HHHHh---cCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000728 876 RGSGLCDIAILVVDIMHGLEPQTIESL-NLLKM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1326)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E~l-~~l~~---~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~e~~~~ 951 (1326)
..+..||++|||+|+.+....+....| ..+.. .++|+|||+||+|+...+. .+
T Consensus 68 ~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~----~~------------------- 124 (164)
T smart00175 68 SYYRGAVGALLVYDITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQ----VS------------------- 124 (164)
T ss_pred HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccC----CC-------------------
Confidence 999999999999999885544444333 22222 4689999999999862110 00
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHHH
Q 000728 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1326)
Q Consensus 952 l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1326)
...+...+... .++++++||.+|.||.+++.+|+..+
T Consensus 125 ~~~~~~~~~~~---------------~~~~~e~Sa~~~~~i~~l~~~i~~~~ 161 (164)
T smart00175 125 REEAEAFAEEH---------------GLPFFETSAKTNTNVEEAFEELAREI 161 (164)
T ss_pred HHHHHHHHHHc---------------CCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 01111111111 14799999999999999999998755
No 112
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.72 E-value=7.5e-17 Score=178.02 Aligned_cols=201 Identities=18% Similarity=0.189 Sum_probs=118.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchhhhhh
Q 000728 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1326)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~~lr~ 875 (1326)
.|+|||+.++|||||+.+|+...+.. ..+ ++|..+.... +....|.||||||++.|..++.
T Consensus 2 KIvivG~~~vGKTSLi~r~~~~~f~~-~~~----Tig~~~~~~~--------------~~~~~l~iwDt~G~e~~~~l~~ 62 (220)
T cd04126 2 KVVLLGDMNVGKTSLLHRYMERRFKD-TVS----TVGGAFYLKQ--------------WGPYNISIWDTAGREQFHGLGS 62 (220)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCC-CCC----ccceEEEEEE--------------eeEEEEEEEeCCCcccchhhHH
Confidence 58999999999999999999877643 122 2222221110 1113489999999999999999
Q ss_pred hccCccceeEEeeccccCCchhHHHH-HHHHHh---cCCcEEEEEeccccccCcccCCCc-hHHHHHHHhhHHHHHHHHH
Q 000728 876 RGSGLCDIAILVVDIMHGLEPQTIES-LNLLKM---RNTEFIVALNKVDRLYGWKTCRNA-PIVKAIKQQNTDVQNEFNM 950 (1326)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E~-l~~l~~---~~vP~IVvINKiD~~~~w~~~~~a-~~~~~L~~q~~~~~~e~~~ 950 (1326)
.+++.+|++|||+|+++......+.. |..+.. .++|+|||+||+|+...|....+. +-...+..... . ..
T Consensus 63 ~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~---r--~v 137 (220)
T cd04126 63 MYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQ---R--QV 137 (220)
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccccccccccccccccccccccc---c--cC
Confidence 99999999999999998544444432 222322 358999999999997432211000 00000000000 0 00
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHHHHHhHhhhhhcccccceeE
Q 000728 951 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQCTV 1021 (1326)
Q Consensus 951 ~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~q~~l~e~l~~~~~~~~~V 1021 (1326)
..........+.+- ...+|++-.....++|++|||+||.||.+||..|+..+...+..........+++|
T Consensus 138 ~~~e~~~~a~~~~~-~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~~~~~~~~~~~~~~~~~ 207 (220)
T cd04126 138 TLEDAKAFYKRINK-YKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLPLILAQRAEANRTQGTV 207 (220)
T ss_pred CHHHHHHHHHHhCc-cccccccccccccceEEEeeCCCCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhccc
Confidence 01111111222110 01122222222347899999999999999999998877665555444333334443
No 113
>PTZ00369 Ras-like protein; Provisional
Probab=99.72 E-value=6e-17 Score=173.95 Aligned_cols=163 Identities=16% Similarity=0.078 Sum_probs=106.9
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchhh
Q 000728 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 872 (1326)
Q Consensus 793 R~piV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~~ 872 (1326)
+.+.|+|+|+.|+|||||+++|.+..+.....+.+...+. ..+... .....+.||||||+..|..
T Consensus 4 ~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~~-~~~~~~--------------~~~~~l~i~Dt~G~~~~~~ 68 (189)
T PTZ00369 4 TEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYR-KQCVID--------------EETCLLDILDTAGQEEYSA 68 (189)
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEEE-EEEEEC--------------CEEEEEEEEeCCCCccchh
Confidence 3467999999999999999999987664332222211111 000110 0112488999999999999
Q ss_pred hhhhccCccceeEEeeccccCCchhHHHHH-HHHH----hcCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHHH
Q 000728 873 LRSRGSGLCDIAILVVDIMHGLEPQTIESL-NLLK----MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNE 947 (1326)
Q Consensus 873 lr~rg~~~aDiaILVVDa~~Gv~~QT~E~l-~~l~----~~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~e 947 (1326)
++..+++.+|++|||+|+++..+......| ..+. ..++|+|||+||+|+...+ .+.
T Consensus 69 l~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~------~i~------------- 129 (189)
T PTZ00369 69 MRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSER------QVS------------- 129 (189)
T ss_pred hHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccc------ccC-------------
Confidence 999999999999999999875443333222 2222 2378999999999985211 000
Q ss_pred HHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHHHHHhHh
Q 000728 948 FNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMV 1008 (1326)
Q Consensus 948 ~~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~q~~l~ 1008 (1326)
........... .+++++|||++|.||.++|.+|+..+...+.
T Consensus 130 ----~~~~~~~~~~~---------------~~~~~e~Sak~~~gi~~~~~~l~~~l~~~~~ 171 (189)
T PTZ00369 130 ----TGEGQELAKSF---------------GIPFLETSAKQRVNVDEAFYELVREIRKYLK 171 (189)
T ss_pred ----HHHHHHHHHHh---------------CCEEEEeeCCCCCCHHHHHHHHHHHHHHHhh
Confidence 00011111111 1489999999999999999999877655443
No 114
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.71 E-value=1e-16 Score=195.74 Aligned_cols=161 Identities=19% Similarity=0.226 Sum_probs=115.3
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCccc-ccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCC----
Q 000728 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH---- 867 (1326)
Q Consensus 793 R~piV~IlGhvdaGKTTLLd~L~~~~v~-~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGh---- 867 (1326)
+.+.|+|+|++|+|||||+++|++..+. .....|+|.+.....+.+. ...+.||||||+
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~----------------~~~~~l~DTaG~~~~~ 273 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELG----------------GKTWRFVDTAGLRRRV 273 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEEC----------------CEEEEEEECCCccccc
Confidence 4577999999999999999999987642 3455666665433333222 234889999994
Q ss_pred ------cchhhhhh-hccCccceeEEeeccccCCchhHHHHHHHHHhcCCcEEEEEeccccccCcccCCCchHHHHHHHh
Q 000728 868 ------ESFTNLRS-RGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQ 940 (1326)
Q Consensus 868 ------e~F~~lr~-rg~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q 940 (1326)
+.|..++. .++..+|++|||+|+++++..+....+.++...++|+|||+||+|+... .....
T Consensus 274 ~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~~~~piIiV~NK~Dl~~~-------~~~~~---- 342 (472)
T PRK03003 274 KQASGHEYYASLRTHAAIEAAEVAVVLIDASEPISEQDQRVLSMVIEAGRALVLAFNKWDLVDE-------DRRYY---- 342 (472)
T ss_pred cccchHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCCh-------hHHHH----
Confidence 44555543 4578999999999999999999998888888889999999999999621 00000
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHHHH
Q 000728 941 NTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1004 (1326)
Q Consensus 941 ~~~~~~e~~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~q 1004 (1326)
+ ...+...+... ..+++++|||++|.||.+||..|...+.
T Consensus 343 -------~---~~~i~~~l~~~--------------~~~~~~~~SAk~g~gv~~lf~~i~~~~~ 382 (472)
T PRK03003 343 -------L---EREIDRELAQV--------------PWAPRVNISAKTGRAVDKLVPALETALE 382 (472)
T ss_pred -------H---HHHHHHhcccC--------------CCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 0 01111111110 2368999999999999999999987663
No 115
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.71 E-value=4.1e-17 Score=167.93 Aligned_cols=147 Identities=25% Similarity=0.325 Sum_probs=102.7
Q ss_pred EEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchhh------
Q 000728 799 IMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN------ 872 (1326)
Q Consensus 799 IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~~------ 872 (1326)
|+|++|+|||||+++|++..+..+..+|+|.+.....+.+. ...+.||||||+..|..
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~----------------~~~~~liDtpG~~~~~~~~~~~~ 64 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLG----------------GKEIEIVDLPGTYSLSPYSEDEK 64 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeC----------------CeEEEEEECCCccccCCCChhHH
Confidence 68999999999999999876555666677766543333322 23599999999988764
Q ss_pred hhhhcc--CccceeEEeeccccCCchhHHHHHHHHHhcCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHHHHHH
Q 000728 873 LRSRGS--GLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 950 (1326)
Q Consensus 873 lr~rg~--~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~e~~~ 950 (1326)
++..++ ..+|++|||+|+.+. .+....+..+...++|+|||+||+|+... ..+. .
T Consensus 65 ~~~~~~~~~~~d~vi~v~d~~~~--~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~------~~~~---------------~ 121 (158)
T cd01879 65 VARDFLLGEKPDLIVNVVDATNL--ERNLYLTLQLLELGLPVVVALNMIDEAEK------RGIK---------------I 121 (158)
T ss_pred HHHHHhcCCCCcEEEEEeeCCcc--hhHHHHHHHHHHcCCCEEEEEehhhhccc------ccch---------------h
Confidence 344445 489999999999873 33344555666778999999999998631 0000 0
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHH
Q 000728 951 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1326)
Q Consensus 951 ~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~ 1002 (1326)
.+ ..+... + .++++++||++|.|+..|+.+|..+
T Consensus 122 ---~~-~~~~~~-~-------------~~~~~~iSa~~~~~~~~l~~~l~~~ 155 (158)
T cd01879 122 ---DL-DKLSEL-L-------------GVPVVPTSARKGEGIDELKDAIAEL 155 (158)
T ss_pred ---hH-HHHHHh-h-------------CCCeEEEEccCCCCHHHHHHHHHHH
Confidence 00 011110 0 1479999999999999999988764
No 116
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.71 E-value=5.9e-17 Score=169.20 Aligned_cols=157 Identities=17% Similarity=0.126 Sum_probs=105.2
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchhhhh
Q 000728 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1326)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~~lr 874 (1326)
..|+|+|..|+|||||+++|.+..+.....++++.++....+..... ...+.||||||+..|..++
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~--------------~~~~~i~D~~G~~~~~~~~ 68 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGK--------------TIKLQIWDTAGQERFRTIT 68 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCE--------------EEEEEEEECCCcHhHHHHH
Confidence 35999999999999999999987765544444443322222221110 1248999999999999999
Q ss_pred hhccCccceeEEeeccccCCchhHHHHH-HHHHh---cCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHHHHHH
Q 000728 875 SRGSGLCDIAILVVDIMHGLEPQTIESL-NLLKM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 950 (1326)
Q Consensus 875 ~rg~~~aDiaILVVDa~~Gv~~QT~E~l-~~l~~---~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~e~~~ 950 (1326)
...++.+|++|||+|+++......+..| ..+.. .++|+|||+||+|+... +...
T Consensus 69 ~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~----~~~~------------------ 126 (166)
T cd01869 69 SSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDK----RVVD------------------ 126 (166)
T ss_pred HHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccc----cCCC------------------
Confidence 9999999999999999874332222222 22222 46899999999998521 0000
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHHH
Q 000728 951 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1326)
Q Consensus 951 ~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1326)
...+...... ..++++++||++|.||.++|..|+..+
T Consensus 127 -~~~~~~~~~~---------------~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 163 (166)
T cd01869 127 -YSEAQEFADE---------------LGIPFLETSAKNATNVEQAFMTMAREI 163 (166)
T ss_pred -HHHHHHHHHH---------------cCCeEEEEECCCCcCHHHHHHHHHHHH
Confidence 0011111111 125899999999999999999987654
No 117
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.71 E-value=8.8e-17 Score=167.14 Aligned_cols=156 Identities=16% Similarity=0.121 Sum_probs=102.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchhhhhh
Q 000728 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1326)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~~lr~ 875 (1326)
.|+|+|++|+|||||+++|.+..+.....+.++ +.....+.... ....|.||||||+..|..++.
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~--------------~~~~l~i~Dt~g~~~~~~~~~ 66 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIE-DSYRKQIEIDG--------------EVCLLDILDTAGQEEFSAMRD 66 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCcccCCchh-hhEEEEEEECC--------------EEEEEEEEECCCcccchHHHH
Confidence 599999999999999999998766543323222 11111111100 012488999999999999999
Q ss_pred hccCccceeEEeeccccCCchhHHHHH-HHH----HhcCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHHHHHH
Q 000728 876 RGSGLCDIAILVVDIMHGLEPQTIESL-NLL----KMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 950 (1326)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E~l-~~l----~~~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~e~~~ 950 (1326)
.+++.+|++|||+|+++.-.......| ..+ ...++|+|||+||+|+...+ .+.
T Consensus 67 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~------~~~---------------- 124 (164)
T smart00173 67 QYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESER------VVS---------------- 124 (164)
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccc------eEc----------------
Confidence 999999999999999874333332222 112 22368999999999986310 000
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHHHH
Q 000728 951 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1004 (1326)
Q Consensus 951 ~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~q 1004 (1326)
...+....... .+++++|||++|.||.+|+.+|+..+.
T Consensus 125 -~~~~~~~~~~~---------------~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 162 (164)
T smart00173 125 -TEEGKELARQW---------------GCPFLETSAKERVNVDEAFYDLVREIR 162 (164)
T ss_pred -HHHHHHHHHHc---------------CCEEEEeecCCCCCHHHHHHHHHHHHh
Confidence 00111111111 158999999999999999999986543
No 118
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.71 E-value=7.1e-17 Score=169.59 Aligned_cols=157 Identities=21% Similarity=0.159 Sum_probs=106.4
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchhhhh
Q 000728 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1326)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~~lr 874 (1326)
..|+|+|++|+|||||+++|+...+.......++.++....+..... ...++||||||++.|..++
T Consensus 5 ~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~--------------~~~~~i~Dt~G~~~~~~~~ 70 (168)
T cd01866 5 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGK--------------QIKLQIWDTAGQESFRSIT 70 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCE--------------EEEEEEEECCCcHHHHHHH
Confidence 46999999999999999999987765443333333332222222110 1248999999999999999
Q ss_pred hhccCccceeEEeeccccCCchhHHHHH-HHHHh---cCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHHHHHH
Q 000728 875 SRGSGLCDIAILVVDIMHGLEPQTIESL-NLLKM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 950 (1326)
Q Consensus 875 ~rg~~~aDiaILVVDa~~Gv~~QT~E~l-~~l~~---~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~e~~~ 950 (1326)
..++..+|++|||+|+++....+.+..| ..++. .++|+|||+||+|+... +...
T Consensus 71 ~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~----~~~~------------------ 128 (168)
T cd01866 71 RSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESR----REVS------------------ 128 (168)
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccc----cCCC------------------
Confidence 9999999999999999875444443333 22322 36899999999998621 0000
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHHH
Q 000728 951 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1326)
Q Consensus 951 ~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1326)
...+...+... .++++++||++|.||.++|.+|+..+
T Consensus 129 -~~~~~~~~~~~---------------~~~~~e~Sa~~~~~i~~~~~~~~~~~ 165 (168)
T cd01866 129 -YEEGEAFAKEH---------------GLIFMETSAKTASNVEEAFINTAKEI 165 (168)
T ss_pred -HHHHHHHHHHc---------------CCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 01111112111 24789999999999999998887654
No 119
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.71 E-value=5.1e-17 Score=168.67 Aligned_cols=151 Identities=26% Similarity=0.261 Sum_probs=99.0
Q ss_pred EEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchhhhhhh
Q 000728 797 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSR 876 (1326)
Q Consensus 797 V~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~~lr~r 876 (1326)
|+|+|++++|||||+++|....+... .+.+...+ ..+. +....+.||||||+..|..++..
T Consensus 2 v~lvG~~~~GKTsl~~~l~~~~~~~~-~~t~~~~~--~~~~----------------~~~~~~~i~Dt~G~~~~~~~~~~ 62 (158)
T cd04151 2 ILILGLDNAGKTTILYRLQLGEVVTT-IPTIGFNV--ETVT----------------YKNLKFQVWDLGGQTSIRPYWRC 62 (158)
T ss_pred EEEECCCCCCHHHHHHHHccCCCcCc-CCccCcCe--EEEE----------------ECCEEEEEEECCCCHHHHHHHHH
Confidence 89999999999999999976554321 11111111 1111 11234899999999999999999
Q ss_pred ccCccceeEEeeccccCCchh-HHHHHH-HHHh---cCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000728 877 GSGLCDIAILVVDIMHGLEPQ-TIESLN-LLKM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1326)
Q Consensus 877 g~~~aDiaILVVDa~~Gv~~Q-T~E~l~-~l~~---~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~e~~~~ 951 (1326)
++..+|++|||+|+++..... ....|. ++.. .+.|+|||+||+|+...+ .
T Consensus 63 ~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~------~------------------- 117 (158)
T cd04151 63 YYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGAL------S------------------- 117 (158)
T ss_pred HhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCC------C-------------------
Confidence 999999999999998743222 223333 2222 368999999999986311 0
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHH
Q 000728 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1001 (1326)
Q Consensus 952 l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~ 1001 (1326)
...+...+ ++.. + ....+++++|||++|.||.+|+.+|+.
T Consensus 118 ~~~i~~~~---~~~~---~----~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 157 (158)
T cd04151 118 EAEISEKL---GLSE---L----KDRTWSIFKTSAIKGEGLDEGMDWLVN 157 (158)
T ss_pred HHHHHHHh---Cccc---c----CCCcEEEEEeeccCCCCHHHHHHHHhc
Confidence 01111111 1110 0 012358999999999999999998863
No 120
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.71 E-value=6.3e-17 Score=169.68 Aligned_cols=157 Identities=18% Similarity=0.104 Sum_probs=105.8
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchhhhh
Q 000728 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1326)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~~lr 874 (1326)
+.|+|+|.+++|||||+++|.+..+.....++++.+.....+.+... ...|.||||||+..|..++
T Consensus 4 ~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~--------------~~~l~l~D~~g~~~~~~~~ 69 (167)
T cd01867 4 FKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGK--------------KIKLQIWDTAGQERFRTIT 69 (167)
T ss_pred eEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCE--------------EEEEEEEeCCchHHHHHHH
Confidence 56999999999999999999988765543333332222111211110 1248999999999999999
Q ss_pred hhccCccceeEEeeccccCCchhHHHHHH-HHH---hcCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHHHHHH
Q 000728 875 SRGSGLCDIAILVVDIMHGLEPQTIESLN-LLK---MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 950 (1326)
Q Consensus 875 ~rg~~~aDiaILVVDa~~Gv~~QT~E~l~-~l~---~~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~e~~~ 950 (1326)
...++.+|++|||+|++++...+.+..|. .+. ..++|+|||+||+|+... +...
T Consensus 70 ~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~----~~~~------------------ 127 (167)
T cd01867 70 TAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEK----RVVS------------------ 127 (167)
T ss_pred HHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccc----cCCC------------------
Confidence 99999999999999998754433333332 222 246899999999998621 0000
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHHH
Q 000728 951 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1326)
Q Consensus 951 ~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1326)
.......+... .+++++|||.+|.||.++|.+|+..+
T Consensus 128 -~~~~~~~~~~~---------------~~~~~~~Sa~~~~~v~~~~~~i~~~~ 164 (167)
T cd01867 128 -KEEGEALADEY---------------GIKFLETSAKANINVEEAFFTLAKDI 164 (167)
T ss_pred -HHHHHHHHHHc---------------CCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 01111111111 24799999999999999999987654
No 121
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.71 E-value=5.8e-17 Score=167.77 Aligned_cols=152 Identities=22% Similarity=0.289 Sum_probs=98.9
Q ss_pred EEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchhhhhhh
Q 000728 797 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSR 876 (1326)
Q Consensus 797 V~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~~lr~r 876 (1326)
|+|+|+.++|||||+++|.+...... .+++++|.....+. +....++||||||+..|..++..
T Consensus 2 i~~vG~~~~GKTsl~~~l~~~~~~~~---~~~~t~g~~~~~~~--------------~~~~~~~l~Dt~G~~~~~~~~~~ 64 (162)
T cd04157 2 ILVVGLDNSGKTTIINQLKPENAQSQ---IIVPTVGFNVESFE--------------KGNLSFTAFDMSGQGKYRGLWEH 64 (162)
T ss_pred EEEECCCCCCHHHHHHHHcccCCCcc---eecCccccceEEEE--------------ECCEEEEEEECCCCHhhHHHHHH
Confidence 89999999999999999987643111 12222222111110 11234899999999999999999
Q ss_pred ccCccceeEEeeccccCCchhH-HHHHHHHH------hcCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHHHHH
Q 000728 877 GSGLCDIAILVVDIMHGLEPQT-IESLNLLK------MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 949 (1326)
Q Consensus 877 g~~~aDiaILVVDa~~Gv~~QT-~E~l~~l~------~~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~e~~ 949 (1326)
++..+|++|||+|++++..... ...+..+. ..++|+|||+||+|+... ..
T Consensus 65 ~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~------~~----------------- 121 (162)
T cd04157 65 YYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDA------LT----------------- 121 (162)
T ss_pred HHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCC------CC-----------------
Confidence 9999999999999988643221 12222221 247999999999998621 00
Q ss_pred HHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHH
Q 000728 950 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLV 1000 (1326)
Q Consensus 950 ~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~ 1000 (1326)
...+...+ ++. .+ ....+++++|||++|.||.+++.+|.
T Consensus 122 --~~~~~~~l---~~~--~~-----~~~~~~~~~~Sa~~g~gv~~~~~~l~ 160 (162)
T cd04157 122 --AVKITQLL---GLE--NI-----KDKPWHIFASNALTGEGLDEGVQWLQ 160 (162)
T ss_pred --HHHHHHHh---CCc--cc-----cCceEEEEEeeCCCCCchHHHHHHHh
Confidence 00111111 110 00 01235799999999999999999885
No 122
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.71 E-value=7.5e-17 Score=168.77 Aligned_cols=156 Identities=21% Similarity=0.176 Sum_probs=104.2
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchhhhh
Q 000728 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1326)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~~lr 874 (1326)
..|+|+|+.++|||||+++|....+.....+.+..++....+.... ....+.||||||+..|..++
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--------------~~~~l~i~Dt~G~~~~~~~~ 68 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNG--------------QKIKLQIWDTAGQERFRAVT 68 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECC--------------EEEEEEEEECCCcHHHHHHH
Confidence 3599999999999999999998766543322222222221121111 01248999999999999999
Q ss_pred hhccCccceeEEeeccccCCchhHHHHHH-HHH---hcCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHHHHHH
Q 000728 875 SRGSGLCDIAILVVDIMHGLEPQTIESLN-LLK---MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 950 (1326)
Q Consensus 875 ~rg~~~aDiaILVVDa~~Gv~~QT~E~l~-~l~---~~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~e~~~ 950 (1326)
..+++.+|++|||+|+++....+.+..|. .+. ..++|+|||+||+|+... +...
T Consensus 69 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~----~~~~------------------ 126 (166)
T cd04122 69 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQ----RDVT------------------ 126 (166)
T ss_pred HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccc----cCcC------------------
Confidence 99999999999999998854444443332 222 246899999999998621 0000
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHH
Q 000728 951 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1326)
Q Consensus 951 ~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~ 1002 (1326)
...+...+... .+++++|||++|.||.++|..|+..
T Consensus 127 -~~~~~~~~~~~---------------~~~~~e~Sa~~~~~i~e~f~~l~~~ 162 (166)
T cd04122 127 -YEEAKQFADEN---------------GLLFLECSAKTGENVEDAFLETAKK 162 (166)
T ss_pred -HHHHHHHHHHc---------------CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 01111111111 2589999999999999999888754
No 123
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.71 E-value=6.5e-17 Score=167.57 Aligned_cols=155 Identities=19% Similarity=0.118 Sum_probs=100.7
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchhhhh
Q 000728 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1326)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~~lr 874 (1326)
+.|+|+|.+|+|||||+++|....+.....+.+...+ ...+.... ....+.||||||++.|..++
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~--------------~~~~l~i~Dt~G~~~~~~~~ 66 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQIEVDG--------------QQCMLEILDTAGTEQFTAMR 66 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhhhE-EEEEEECC--------------EEEEEEEEECCCccccchHH
Confidence 4699999999999999999997665432222221110 01111110 01247899999999999999
Q ss_pred hhccCccceeEEeeccccCCchhHHHH-HHHHHh----cCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHHHHH
Q 000728 875 SRGSGLCDIAILVVDIMHGLEPQTIES-LNLLKM----RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 949 (1326)
Q Consensus 875 ~rg~~~aDiaILVVDa~~Gv~~QT~E~-l~~l~~----~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~e~~ 949 (1326)
..+++.+|++|||+|+++......... +..+.. .++|+|||+||+|+... ..+.
T Consensus 67 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~------~~~~--------------- 125 (163)
T cd04136 67 DLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDE------RVVS--------------- 125 (163)
T ss_pred HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc------ceec---------------
Confidence 999999999999999987433222222 222222 36899999999998521 0000
Q ss_pred HHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHH
Q 000728 950 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1326)
Q Consensus 950 ~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~ 1002 (1326)
.... ..+.. .++ +++++|||++|.||.+|+.+|+..
T Consensus 126 --~~~~-~~~~~------------~~~--~~~~~~Sa~~~~~v~~l~~~l~~~ 161 (163)
T cd04136 126 --REEG-QALAR------------QWG--CPFYETSAKSKINVDEVFADLVRQ 161 (163)
T ss_pred --HHHH-HHHHH------------HcC--CeEEEecCCCCCCHHHHHHHHHHh
Confidence 0000 11111 112 589999999999999999998753
No 124
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.71 E-value=8.3e-17 Score=170.54 Aligned_cols=158 Identities=18% Similarity=0.121 Sum_probs=106.4
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchhh
Q 000728 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 872 (1326)
Q Consensus 793 R~piV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~~ 872 (1326)
|...|+|+|..|+|||||+.+|+...+.....+.+...+. ..+.... ....++||||||+..|..
T Consensus 1 ~~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~-~~~~~~~--------------~~~~l~i~Dt~G~~~~~~ 65 (172)
T cd04141 1 REYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYK-QQARIDN--------------EPALLDILDTAGQAEFTA 65 (172)
T ss_pred CceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEE-EEEEECC--------------EEEEEEEEeCCCchhhHH
Confidence 3457999999999999999999987765332222211111 1111110 012489999999999999
Q ss_pred hhhhccCccceeEEeeccccCCchhHHHHH-HHHH----hcCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHHH
Q 000728 873 LRSRGSGLCDIAILVVDIMHGLEPQTIESL-NLLK----MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNE 947 (1326)
Q Consensus 873 lr~rg~~~aDiaILVVDa~~Gv~~QT~E~l-~~l~----~~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~e 947 (1326)
++..+++.+|++|||+|+++....++...| ..+. ..++|+|||+||+|+...+ ..+
T Consensus 66 l~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~----~v~--------------- 126 (172)
T cd04141 66 MRDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQR----QVT--------------- 126 (172)
T ss_pred HhHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcC----ccC---------------
Confidence 999999999999999999987766665433 2222 2468999999999985210 000
Q ss_pred HHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHHH
Q 000728 948 FNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1326)
Q Consensus 948 ~~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1326)
........... .+++++|||++|.||.++|.+|+..+
T Consensus 127 ----~~~~~~~a~~~---------------~~~~~e~Sa~~~~~v~~~f~~l~~~~ 163 (172)
T cd04141 127 ----TEEGRNLAREF---------------NCPFFETSAALRHYIDDAFHGLVREI 163 (172)
T ss_pred ----HHHHHHHHHHh---------------CCEEEEEecCCCCCHHHHHHHHHHHH
Confidence 00111111111 25899999999999999999987644
No 125
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.71 E-value=7.7e-17 Score=167.99 Aligned_cols=156 Identities=19% Similarity=0.101 Sum_probs=101.8
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchhhhh
Q 000728 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1326)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~~lr 874 (1326)
+.|+|+|.+|+|||||+++|+...+.....+++...+ ...+.... ....+.||||||+..|..++
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~--------------~~~~l~i~Dt~G~~~~~~~~ 66 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDG--------------QQCMLEILDTAGTEQFTAMR 66 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECC--------------EEEEEEEEECCCcccchhHH
Confidence 4699999999999999999987655432222222111 11111110 01247899999999999999
Q ss_pred hhccCccceeEEeeccccCCchhHHH-HHHHHH----hcCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHHHHH
Q 000728 875 SRGSGLCDIAILVVDIMHGLEPQTIE-SLNLLK----MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 949 (1326)
Q Consensus 875 ~rg~~~aDiaILVVDa~~Gv~~QT~E-~l~~l~----~~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~e~~ 949 (1326)
..+++.+|++|||+|.++....+... ++..+. ..++|+|||+||+|+... ..+.
T Consensus 67 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~------~~~~--------------- 125 (164)
T cd04175 67 DLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDE------RVVG--------------- 125 (164)
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhc------cEEc---------------
Confidence 99999999999999987654333222 222222 246899999999998621 0000
Q ss_pred HHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHHH
Q 000728 950 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1326)
Q Consensus 950 ~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1326)
...+ ..+... + .++++++||++|.||.++|.+|+..+
T Consensus 126 --~~~~-~~~~~~------------~--~~~~~~~Sa~~~~~v~~~~~~l~~~l 162 (164)
T cd04175 126 --KEQG-QNLARQ------------W--GCAFLETSAKAKINVNEIFYDLVRQI 162 (164)
T ss_pred --HHHH-HHHHHH------------h--CCEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 0000 111110 0 15899999999999999999987644
No 126
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.71 E-value=9.7e-17 Score=168.23 Aligned_cols=155 Identities=17% Similarity=0.159 Sum_probs=103.4
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchhhhh
Q 000728 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1326)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~~lr 874 (1326)
..|+|+|++++|||||+++|+...+.....+.++.+.....+.+.. ....|.|||||||+.|..++
T Consensus 6 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~l~i~D~~G~~~~~~~~ 71 (170)
T cd04116 6 LKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDG--------------HFVTLQIWDTAGQERFRSLR 71 (170)
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECC--------------eEEEEEEEeCCChHHHHHhH
Confidence 4599999999999999999998766543333332222111111111 01248899999999999999
Q ss_pred hhccCccceeEEeeccccCCchhHHHHHH-HHH-------hcCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHH
Q 000728 875 SRGSGLCDIAILVVDIMHGLEPQTIESLN-LLK-------MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQN 946 (1326)
Q Consensus 875 ~rg~~~aDiaILVVDa~~Gv~~QT~E~l~-~l~-------~~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~ 946 (1326)
..+++.+|++|||+|+++....+....|. .+. ..++|+|||+||+|+... ...
T Consensus 72 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-----~~~-------------- 132 (170)
T cd04116 72 TPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPER-----QVS-------------- 132 (170)
T ss_pred HHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccccc-----ccC--------------
Confidence 99999999999999998764444333331 111 135899999999998510 000
Q ss_pred HHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHH
Q 000728 947 EFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1001 (1326)
Q Consensus 947 e~~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~ 1001 (1326)
...+...+...+ .++++++||++|.||.++|..|+.
T Consensus 133 -----~~~~~~~~~~~~--------------~~~~~e~Sa~~~~~v~~~~~~~~~ 168 (170)
T cd04116 133 -----TEEAQAWCRENG--------------DYPYFETSAKDATNVAAAFEEAVR 168 (170)
T ss_pred -----HHHHHHHHHHCC--------------CCeEEEEECCCCCCHHHHHHHHHh
Confidence 011112222221 247899999999999999998875
No 127
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.71 E-value=9.2e-17 Score=169.95 Aligned_cols=167 Identities=16% Similarity=0.095 Sum_probs=107.1
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchhhhh
Q 000728 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1326)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~~lr 874 (1326)
..|+|+|..++|||||+++|....+.....++++.++....+.+......+ ....-....+.||||||+..|..++
T Consensus 5 ~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~i~Dt~G~~~~~~~~ 80 (180)
T cd04127 5 IKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGG----TLGRGQRIHLQLWDTAGQERFRSLT 80 (180)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccc----cccCCCEEEEEEEeCCChHHHHHHH
Confidence 569999999999999999999877654444444433332222221100000 0000011248999999999999999
Q ss_pred hhccCccceeEEeeccccCCchhHHHHH-HHHHh----cCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHHHHH
Q 000728 875 SRGSGLCDIAILVVDIMHGLEPQTIESL-NLLKM----RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 949 (1326)
Q Consensus 875 ~rg~~~aDiaILVVDa~~Gv~~QT~E~l-~~l~~----~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~e~~ 949 (1326)
..+++.+|++|||+|+++.-..+.+..| ..+.. .+.|+|||+||+|+... +...
T Consensus 81 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~----~~v~----------------- 139 (180)
T cd04127 81 TAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQ----RQVS----------------- 139 (180)
T ss_pred HHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhc----CccC-----------------
Confidence 9999999999999999874433333322 22222 36899999999998521 0000
Q ss_pred HHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHHH
Q 000728 950 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1326)
Q Consensus 950 ~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1326)
...+....... .++++++||++|.||.+++.+|+..+
T Consensus 140 --~~~~~~~~~~~---------------~~~~~e~Sak~~~~v~~l~~~l~~~~ 176 (180)
T cd04127 140 --EEQAKALADKY---------------GIPYFETSAATGTNVEKAVERLLDLV 176 (180)
T ss_pred --HHHHHHHHHHc---------------CCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 01111111111 15799999999999999999987644
No 128
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.70 E-value=9.3e-17 Score=168.96 Aligned_cols=154 Identities=18% Similarity=0.167 Sum_probs=104.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchhhhhh
Q 000728 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1326)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~~lr~ 875 (1326)
.|+|+|..|+|||||+++|+...+.....+.+...+....+.... ....+.||||||+..|..++.
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--------------~~~~l~i~Dt~G~~~~~~~~~ 67 (166)
T cd00877 2 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNR--------------GKIRFNVWDTAGQEKFGGLRD 67 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECC--------------EEEEEEEEECCCChhhccccH
Confidence 599999999999999999987665433333332232222222110 112489999999999999999
Q ss_pred hccCccceeEEeeccccCCchhHHHHH-HHHHhc--CCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHHHHHHHH
Q 000728 876 RGSGLCDIAILVVDIMHGLEPQTIESL-NLLKMR--NTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRL 952 (1326)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E~l-~~l~~~--~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~e~~~~l 952 (1326)
..+..+|++|||+|++++...+.+..| ..+... ++|+|||+||+|+... ...
T Consensus 68 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl~~~-----~~~-------------------- 122 (166)
T cd00877 68 GYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIKDR-----KVK-------------------- 122 (166)
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhcccc-----cCC--------------------
Confidence 999999999999999886554444333 233222 6999999999998510 000
Q ss_pred HHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHHH
Q 000728 953 VQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1326)
Q Consensus 953 ~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1326)
.... .+... ..+++++|||++|.||.+++.+|+..+
T Consensus 123 ~~~~-~~~~~--------------~~~~~~e~Sa~~~~~v~~~f~~l~~~~ 158 (166)
T cd00877 123 AKQI-TFHRK--------------KNLQYYEISAKSNYNFEKPFLWLARKL 158 (166)
T ss_pred HHHH-HHHHH--------------cCCEEEEEeCCCCCChHHHHHHHHHHH
Confidence 0000 11111 236899999999999999999998554
No 129
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.70 E-value=9e-17 Score=166.72 Aligned_cols=157 Identities=19% Similarity=0.172 Sum_probs=103.8
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchhhhh
Q 000728 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1326)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~~lr 874 (1326)
..|+|+|++++|||||+++|++..+.......+...+....+.+.. ....+.||||||+..|..++
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~--------------~~~~~~i~D~~G~~~~~~~~ 67 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDD--------------TTVKFEIWDTAGQERYRSLA 67 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECC--------------EEEEEEEEeCCchHHHHHHH
Confidence 4699999999999999999998876542222222112122222211 11238899999999999999
Q ss_pred hhccCccceeEEeeccccCCchh-HHHHHHHHHh---cCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHHHHHH
Q 000728 875 SRGSGLCDIAILVVDIMHGLEPQ-TIESLNLLKM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 950 (1326)
Q Consensus 875 ~rg~~~aDiaILVVDa~~Gv~~Q-T~E~l~~l~~---~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~e~~~ 950 (1326)
..+++.+|++|||+|+++.-... ...++..+.. .++|+||++||+|+... +..+
T Consensus 68 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~----~~~~------------------ 125 (163)
T cd01860 68 PMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESK----RQVS------------------ 125 (163)
T ss_pred HHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccc----CcCC------------------
Confidence 98999999999999998643222 2222333333 35899999999998621 0000
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHHH
Q 000728 951 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1326)
Q Consensus 951 ~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1326)
...+...+... + ++++++||++|.|+.+++.+|+..+
T Consensus 126 -~~~~~~~~~~~-------------~--~~~~~~Sa~~~~~v~~l~~~l~~~l 162 (163)
T cd01860 126 -TEEAQEYADEN-------------G--LLFFETSAKTGENVNELFTEIAKKL 162 (163)
T ss_pred -HHHHHHHHHHc-------------C--CEEEEEECCCCCCHHHHHHHHHHHh
Confidence 01111112111 1 5799999999999999999998654
No 130
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.70 E-value=1.2e-16 Score=167.06 Aligned_cols=154 Identities=21% Similarity=0.264 Sum_probs=95.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcc------
Q 000728 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES------ 869 (1326)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~------ 869 (1326)
.|+|||++|||||||+++|.+.....+..++.|.......+.+.. ...++||||||+..
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~---------------~~~~~l~DtpG~~~~~~~~~ 66 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDD---------------GRSFVVADIPGLIEGASEGK 66 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCC---------------CCeEEEEecCcccCcccccC
Confidence 389999999999999999987654333333333322111111111 02599999999742
Q ss_pred -hhhhhhhccCccceeEEeeccccC-CchhHHHHH-HHHHh-----cCCcEEEEEeccccccCcccCCCchHHHHHHHhh
Q 000728 870 -FTNLRSRGSGLCDIAILVVDIMHG-LEPQTIESL-NLLKM-----RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQN 941 (1326)
Q Consensus 870 -F~~lr~rg~~~aDiaILVVDa~~G-v~~QT~E~l-~~l~~-----~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~ 941 (1326)
+...+.+.+..||++|+|+|++++ -..+....| ..+.. .++|+|||+||+|+... ..+
T Consensus 67 ~~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~------~~~-------- 132 (170)
T cd01898 67 GLGHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDE------EEL-------- 132 (170)
T ss_pred CchHHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCc------hhh--------
Confidence 222333445679999999999886 333333333 23332 36899999999998631 110
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHH
Q 000728 942 TDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1326)
Q Consensus 942 ~~~~~e~~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~ 1002 (1326)
......+.... ..++++++||++|.||.+|+.+|..+
T Consensus 133 -----------~~~~~~~~~~~-------------~~~~~~~~Sa~~~~gi~~l~~~i~~~ 169 (170)
T cd01898 133 -----------FELLKELLKEL-------------WGKPVFPISALTGEGLDELLRKLAEL 169 (170)
T ss_pred -----------HHHHHHHHhhC-------------CCCCEEEEecCCCCCHHHHHHHHHhh
Confidence 00111111110 13579999999999999999998754
No 131
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.70 E-value=1.6e-16 Score=175.31 Aligned_cols=159 Identities=20% Similarity=0.170 Sum_probs=108.8
Q ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcch
Q 000728 791 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF 870 (1326)
Q Consensus 791 ~~R~piV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F 870 (1326)
+.....|+|||..|+|||||+.+++...+.....+++...+....+.... ....+.||||||++.|
T Consensus 10 ~~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~--------------~~~~l~i~Dt~G~~~~ 75 (219)
T PLN03071 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNC--------------GKIRFYCWDTAGQEKF 75 (219)
T ss_pred CCCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECC--------------eEEEEEEEECCCchhh
Confidence 36667899999999999999999987766543333332222222221110 0124899999999999
Q ss_pred hhhhhhccCccceeEEeeccccCCchhHHHHH-HHHH--hcCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHHH
Q 000728 871 TNLRSRGSGLCDIAILVVDIMHGLEPQTIESL-NLLK--MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNE 947 (1326)
Q Consensus 871 ~~lr~rg~~~aDiaILVVDa~~Gv~~QT~E~l-~~l~--~~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~e 947 (1326)
..++..+++.+|++|||+|+++....+.+..| ..++ ..++|+|||+||+|+... ...
T Consensus 76 ~~~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~-----~v~--------------- 135 (219)
T PLN03071 76 GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR-----QVK--------------- 135 (219)
T ss_pred hhhhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhhhhc-----cCC---------------
Confidence 99999999999999999999986555554443 2222 246899999999998510 000
Q ss_pred HHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHHH
Q 000728 948 FNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1326)
Q Consensus 948 ~~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1326)
...+ .+... ..+++++|||++|.||.++|.+|+..+
T Consensus 136 ----~~~~--~~~~~--------------~~~~~~e~SAk~~~~i~~~f~~l~~~~ 171 (219)
T PLN03071 136 ----AKQV--TFHRK--------------KNLQYYEISAKSNYNFEKPFLYLARKL 171 (219)
T ss_pred ----HHHH--HHHHh--------------cCCEEEEcCCCCCCCHHHHHHHHHHHH
Confidence 0011 11111 125899999999999999999987654
No 132
>PRK04213 GTP-binding protein; Provisional
Probab=99.70 E-value=1.2e-16 Score=172.82 Aligned_cols=160 Identities=26% Similarity=0.330 Sum_probs=105.8
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCC----
Q 000728 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH---- 867 (1326)
Q Consensus 792 ~R~piV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGh---- 867 (1326)
.+.+.|+|+|++|+|||||+++|++..+..+..+|+|.....+ .+ ..++||||||+
T Consensus 7 ~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~~~~~--~~------------------~~~~l~Dt~G~~~~~ 66 (201)
T PRK04213 7 DRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRKPNHY--DW------------------GDFILTDLPGFGFMS 66 (201)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeCceEE--ee------------------cceEEEeCCcccccc
Confidence 3567899999999999999999998776655555665543211 11 14899999994
Q ss_pred -------cchhhhhhh----ccCccceeEEeeccccC-----------CchhHHHHHHHHHhcCCcEEEEEeccccccCc
Q 000728 868 -------ESFTNLRSR----GSGLCDIAILVVDIMHG-----------LEPQTIESLNLLKMRNTEFIVALNKVDRLYGW 925 (1326)
Q Consensus 868 -------e~F~~lr~r----g~~~aDiaILVVDa~~G-----------v~~QT~E~l~~l~~~~vP~IVvINKiD~~~~w 925 (1326)
+.|..++.. ++..++++|+|+|++.. ..+++.+++..+...++|+|||+||+|+...
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~- 145 (201)
T PRK04213 67 GVPKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRELGIPPIVAVNKMDKIKN- 145 (201)
T ss_pred ccCHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHcCCCeEEEEECccccCc-
Confidence 345444333 34567899999998642 2334566777777789999999999998621
Q ss_pred ccCCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHHHH
Q 000728 926 KTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1004 (1326)
Q Consensus 926 ~~~~~a~~~~~L~~q~~~~~~e~~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~q 1004 (1326)
. . ..+..+... .++.. .|. .+ ..++++|||++| ||.+|+.+|...+.
T Consensus 146 ------~-~---------------~~~~~~~~~---~~~~~--~~~--~~--~~~~~~~SA~~g-gi~~l~~~l~~~~~ 192 (201)
T PRK04213 146 ------R-D---------------EVLDEIAER---LGLYP--PWR--QW--QDIIAPISAKKG-GIEELKEAIRKRLH 192 (201)
T ss_pred ------H-H---------------HHHHHHHHH---hcCCc--ccc--cc--CCcEEEEecccC-CHHHHHHHHHHhhc
Confidence 0 0 001111111 22210 010 01 247899999999 99999999987553
No 133
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=99.70 E-value=4.5e-17 Score=196.24 Aligned_cols=117 Identities=34% Similarity=0.497 Sum_probs=95.9
Q ss_pred cccCCCCCEEEEEeCCCCCHHHHHHHHHcCccc----------------ccccCceeeeeeeeEeccccchhhhhhhccc
Q 000728 788 AEENLRSPICCIMGHVDTGKTKLLDCIRGTNVQ----------------EGEAGGITQQIGATYFPAENIRERTRELKAN 851 (1326)
Q Consensus 788 ~~~~~R~piV~IlGhvdaGKTTLLd~L~~~~v~----------------~ge~gGITq~iga~~~~~~~~~~~~~~v~~~ 851 (1326)
.+..+|| |||+.|+|||||||.+.|+..+.. +..++|||...++...-
T Consensus 5 ~~~~irn--~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~-------------- 68 (887)
T KOG0467|consen 5 GSEGIRN--ICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLL-------------- 68 (887)
T ss_pred CCCceeE--EEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccc--------------
Confidence 3456888 999999999999999999865421 11234455444433321
Q ss_pred cccCCCCEEEEeCCCCcchhhhhhhccCccceeEEeeccccCCchhHHHHHHHHHhcCCcEEEEEeccccc
Q 000728 852 ATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRL 922 (1326)
Q Consensus 852 ~~~~~~~I~IIDTPGhe~F~~lr~rg~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~vP~IVvINKiD~~ 922 (1326)
...+.|+|||+|||.+|...++..++.||+++++||+..|+.+||...++++-..+...|+||||||++
T Consensus 69 --~~~~~~nlidspghvdf~sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~~~~~~~lvinkidrl 137 (887)
T KOG0467|consen 69 --HKDYLINLIDSPGHVDFSSEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWIEGLKPILVINKIDRL 137 (887)
T ss_pred --cCceEEEEecCCCccchhhhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHHccCceEEEEehhhhH
Confidence 234569999999999999999999999999999999999999999999999999999999999999975
No 134
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.70 E-value=9.5e-17 Score=196.05 Aligned_cols=152 Identities=25% Similarity=0.333 Sum_probs=112.6
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCccc-ccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcc---
Q 000728 794 SPICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES--- 869 (1326)
Q Consensus 794 ~piV~IlGhvdaGKTTLLd~L~~~~v~-~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~--- 869 (1326)
.|+|+|||++|+|||||+++|++.... ....+|+|.+.....+.+. ...++||||||+..
T Consensus 38 ~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~----------------~~~~~l~DT~G~~~~~~ 101 (472)
T PRK03003 38 LPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWN----------------GRRFTVVDTGGWEPDAK 101 (472)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEEC----------------CcEEEEEeCCCcCCcch
Confidence 378999999999999999999987643 3456777766543333222 23489999999763
Q ss_pred -----hhhhhhhccCccceeEEeeccccCCchhHHHHHHHHHhcCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHH
Q 000728 870 -----FTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDV 944 (1326)
Q Consensus 870 -----F~~lr~rg~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~ 944 (1326)
|...+..++..||++|||||++++++.....++.+++..++|+|||+||+|+... ..
T Consensus 102 ~~~~~~~~~~~~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~~~~piilV~NK~Dl~~~-------~~----------- 163 (472)
T PRK03003 102 GLQASVAEQAEVAMRTADAVLFVVDATVGATATDEAVARVLRRSGKPVILAANKVDDERG-------EA----------- 163 (472)
T ss_pred hHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCcc-------ch-----------
Confidence 4445566788999999999999998887777888888889999999999998521 00
Q ss_pred HHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHHH
Q 000728 945 QNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1326)
Q Consensus 945 ~~e~~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1326)
. ...+...|+ + .+++|||++|.||.+|+.+|+..+
T Consensus 164 ---------~-~~~~~~~g~-----------~---~~~~iSA~~g~gi~eL~~~i~~~l 198 (472)
T PRK03003 164 ---------D-AAALWSLGL-----------G---EPHPVSALHGRGVGDLLDAVLAAL 198 (472)
T ss_pred ---------h-hHHHHhcCC-----------C---CeEEEEcCCCCCcHHHHHHHHhhc
Confidence 0 001112232 1 246999999999999999988655
No 135
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.70 E-value=1.4e-16 Score=166.79 Aligned_cols=157 Identities=18% Similarity=0.114 Sum_probs=103.2
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchhhhh
Q 000728 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1326)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~~lr 874 (1326)
..|+|+|..|+|||||+++|.+..+.....+.++.++....+... .....+.||||||+..|..++
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~--------------~~~~~~~l~Dt~g~~~~~~~~ 67 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRN--------------DKRVKLQIWDTAGQERYRTIT 67 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEEC--------------CEEEEEEEEECCChHHHHHHH
Confidence 359999999999999999999877643322322222211111100 001248999999999999999
Q ss_pred hhccCccceeEEeeccccCCchhHHHH-HHHHHh---cCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHHHHHH
Q 000728 875 SRGSGLCDIAILVVDIMHGLEPQTIES-LNLLKM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 950 (1326)
Q Consensus 875 ~rg~~~aDiaILVVDa~~Gv~~QT~E~-l~~l~~---~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~e~~~ 950 (1326)
..+++.+|++|||+|+++....+.... +..+.. .++|+|||+||+|+... +...
T Consensus 68 ~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~----~~~~------------------ 125 (165)
T cd01865 68 TAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDE----RVVS------------------ 125 (165)
T ss_pred HHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcc----cccC------------------
Confidence 999999999999999986433333222 233332 35799999999998621 0000
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHHH
Q 000728 951 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1326)
Q Consensus 951 ~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1326)
........... .+++++|||++|.||.+|+.+|+..+
T Consensus 126 -~~~~~~~~~~~---------------~~~~~~~Sa~~~~gv~~l~~~l~~~~ 162 (165)
T cd01865 126 -SERGRQLADQL---------------GFEFFEASAKENINVKQVFERLVDII 162 (165)
T ss_pred -HHHHHHHHHHc---------------CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 00111111111 14799999999999999999987653
No 136
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.70 E-value=8e-17 Score=166.80 Aligned_cols=153 Identities=20% Similarity=0.244 Sum_probs=99.3
Q ss_pred EEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchhhhhhh
Q 000728 797 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSR 876 (1326)
Q Consensus 797 V~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~~lr~r 876 (1326)
|+|+|.+|+|||||+++|.+..+... .+++...+. .+... ....|.||||||+..|..++..
T Consensus 2 i~i~G~~~~GKTsl~~~~~~~~~~~~-~~t~~~~~~--~~~~~---------------~~~~l~i~D~~G~~~~~~~~~~ 63 (160)
T cd04156 2 VLLLGLDSAGKSTLLYKLKHAELVTT-IPTVGFNVE--MLQLE---------------KHLSLTVWDVGGQEKMRTVWKC 63 (160)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCcccc-cCccCcceE--EEEeC---------------CceEEEEEECCCCHhHHHHHHH
Confidence 89999999999999999998765421 111111111 11100 1135999999999999999999
Q ss_pred ccCccceeEEeeccccCCchhH-HHHHHH-HH---hcCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000728 877 GSGLCDIAILVVDIMHGLEPQT-IESLNL-LK---MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1326)
Q Consensus 877 g~~~aDiaILVVDa~~Gv~~QT-~E~l~~-l~---~~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~e~~~~ 951 (1326)
++..+|++|||+|+.+...... ...+.. +. ..++|+|||+||+|+...+ .
T Consensus 64 ~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~------~------------------- 118 (160)
T cd04156 64 YLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGAL------T------------------- 118 (160)
T ss_pred HhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCc------C-------------------
Confidence 9999999999999987532111 122222 22 2579999999999985210 0
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHH
Q 000728 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1001 (1326)
Q Consensus 952 l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~ 1001 (1326)
...+...+....+. ....+++++|||++|.||.+++.+|..
T Consensus 119 ~~~i~~~~~~~~~~---------~~~~~~~~~~Sa~~~~gv~~~~~~i~~ 159 (160)
T cd04156 119 AEEITRRFKLKKYC---------SDRDWYVQPCSAVTGEGLAEAFRKLAS 159 (160)
T ss_pred HHHHHHHcCCcccC---------CCCcEEEEecccccCCChHHHHHHHhc
Confidence 01111111101110 012468999999999999999998864
No 137
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.70 E-value=1.2e-16 Score=165.63 Aligned_cols=154 Identities=21% Similarity=0.206 Sum_probs=103.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchhhhhh
Q 000728 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1326)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~~lr~ 875 (1326)
.|+|+|++++|||||+++|++..+.....+.++.++....+.+.. ....+.||||||+..|..++.
T Consensus 2 ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~l~D~~g~~~~~~~~~ 67 (161)
T cd01863 2 KILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDG--------------KKVKLAIWDTAGQERFRTLTS 67 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECC--------------EEEEEEEEECCCchhhhhhhH
Confidence 589999999999999999998765433223222222111111110 012489999999999999999
Q ss_pred hccCccceeEEeeccccCCchhHHHHH-HHH----HhcCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHHHHHH
Q 000728 876 RGSGLCDIAILVVDIMHGLEPQTIESL-NLL----KMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 950 (1326)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E~l-~~l----~~~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~e~~~ 950 (1326)
..++.+|++|||+|+++....+....| ..+ ...++|++||+||+|+... ..+.
T Consensus 68 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~-----~~~~----------------- 125 (161)
T cd01863 68 SYYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENR-----EVTR----------------- 125 (161)
T ss_pred HHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCccccc-----ccCH-----------------
Confidence 999999999999999875444433333 222 2346899999999998621 1000
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHH
Q 000728 951 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1326)
Q Consensus 951 ~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~ 1002 (1326)
..+...... ..++++++||++|.||.+++..|+..
T Consensus 126 --~~~~~~~~~---------------~~~~~~~~Sa~~~~gi~~~~~~~~~~ 160 (161)
T cd01863 126 --EEGLKFARK---------------HNMLFIETSAKTRDGVQQAFEELVEK 160 (161)
T ss_pred --HHHHHHHHH---------------cCCEEEEEecCCCCCHHHHHHHHHHh
Confidence 111111111 12589999999999999999988753
No 138
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.70 E-value=1.3e-16 Score=171.56 Aligned_cols=155 Identities=19% Similarity=0.190 Sum_probs=102.1
Q ss_pred EEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchhhhhhh
Q 000728 797 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSR 876 (1326)
Q Consensus 797 V~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~~lr~r 876 (1326)
|+|+|.+|+|||||+++|+...+.....+.++..+. ..+.... ....+.||||||+..|..++..
T Consensus 2 i~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~-~~~~~~~--------------~~~~l~i~Dt~G~~~~~~~~~~ 66 (190)
T cd04144 2 LVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYR-KQVVVDG--------------QPCMLEVLDTAGQEEYTALRDQ 66 (190)
T ss_pred EEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEE-EEEEECC--------------EEEEEEEEECCCchhhHHHHHH
Confidence 899999999999999999977664332222211110 0000000 0123889999999999999999
Q ss_pred ccCccceeEEeeccccCCchhHHHHH-HHHHh------cCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHHHHH
Q 000728 877 GSGLCDIAILVVDIMHGLEPQTIESL-NLLKM------RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 949 (1326)
Q Consensus 877 g~~~aDiaILVVDa~~Gv~~QT~E~l-~~l~~------~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~e~~ 949 (1326)
+++.+|++|||+|+++......+..| ..+.. .++|+|||+||+|+.... .+.
T Consensus 67 ~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~------~v~--------------- 125 (190)
T cd04144 67 WIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYER------EVS--------------- 125 (190)
T ss_pred HHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccC------ccC---------------
Confidence 99999999999999875443333332 22221 368999999999986310 000
Q ss_pred HHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHHHH
Q 000728 950 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1004 (1326)
Q Consensus 950 ~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~q 1004 (1326)
........... .+++|++||++|.||.++|.+|+..+.
T Consensus 126 --~~~~~~~~~~~---------------~~~~~e~SAk~~~~v~~l~~~l~~~l~ 163 (190)
T cd04144 126 --TEEGAALARRL---------------GCEFIEASAKTNVNVERAFYTLVRALR 163 (190)
T ss_pred --HHHHHHHHHHh---------------CCEEEEecCCCCCCHHHHHHHHHHHHH
Confidence 00011111111 147999999999999999999987554
No 139
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.70 E-value=1.6e-16 Score=166.28 Aligned_cols=155 Identities=17% Similarity=0.165 Sum_probs=102.0
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchhhhh
Q 000728 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1326)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~~lr 874 (1326)
..|+|+|++|+|||||+++|++..+.....+.+. ..+...-. .......|.||||||+..|..++
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~----~~~~~~~~-----------~~~~~~~l~i~Dt~G~~~~~~~~ 66 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE----DTYRQVIS-----------CSKNICTLQITDTTGSHQFPAMQ 66 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcch----heEEEEEE-----------ECCEEEEEEEEECCCCCcchHHH
Confidence 3599999999999999999998776433222221 11110000 00112348999999999999999
Q ss_pred hhccCccceeEEeeccccCCchhHHH-HHHHHHh------cCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHHH
Q 000728 875 SRGSGLCDIAILVVDIMHGLEPQTIE-SLNLLKM------RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNE 947 (1326)
Q Consensus 875 ~rg~~~aDiaILVVDa~~Gv~~QT~E-~l~~l~~------~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~e 947 (1326)
..+++.+|++|||+|+++........ ++..++. .++|+|||+||+|+... ..+..
T Consensus 67 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~------~~v~~------------ 128 (165)
T cd04140 67 RLSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHK------REVSS------------ 128 (165)
T ss_pred HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECcccccc------CeecH------------
Confidence 98999999999999998865443322 2233332 46899999999998521 11000
Q ss_pred HHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHH
Q 000728 948 FNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1326)
Q Consensus 948 ~~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~ 1002 (1326)
......... ..+++++|||++|.||.++|.+|+.+
T Consensus 129 -----~~~~~~~~~---------------~~~~~~e~SA~~g~~v~~~f~~l~~~ 163 (165)
T cd04140 129 -----NEGAACATE---------------WNCAFMETSAKTNHNVQELFQELLNL 163 (165)
T ss_pred -----HHHHHHHHH---------------hCCcEEEeecCCCCCHHHHHHHHHhc
Confidence 000000100 12578999999999999999998753
No 140
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.69 E-value=1.4e-16 Score=162.68 Aligned_cols=152 Identities=18% Similarity=0.186 Sum_probs=102.0
Q ss_pred EEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchhhhhhh
Q 000728 797 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSR 876 (1326)
Q Consensus 797 V~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~~lr~r 876 (1326)
|+|+|+.|+|||||+++|.+..+.....+++...+. .+.. ....+.+|||||+..|..++..
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~--~~~~----------------~~~~~~~~D~~g~~~~~~~~~~ 63 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMR--KVTK----------------GNVTLKVWDLGGQPRFRSMWER 63 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceE--EEEE----------------CCEEEEEEECCCCHhHHHHHHH
Confidence 799999999999999999987665433332222211 1111 1124899999999999999999
Q ss_pred ccCccceeEEeeccccCCc-hhHHHHHHHHHh----cCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000728 877 GSGLCDIAILVVDIMHGLE-PQTIESLNLLKM----RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1326)
Q Consensus 877 g~~~aDiaILVVDa~~Gv~-~QT~E~l~~l~~----~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~e~~~~ 951 (1326)
++..+|++|||+|+++... .+....|..+.. .++|++||+||+|+... ...
T Consensus 64 ~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~------~~~------------------ 119 (159)
T cd04159 64 YCRGVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGA------LSV------------------ 119 (159)
T ss_pred HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCC------cCH------------------
Confidence 9999999999999986322 222333333322 47899999999998621 000
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHH
Q 000728 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1001 (1326)
Q Consensus 952 l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~ 1001 (1326)
..+ +...++.. .....++++++||++|.||..++.+|..
T Consensus 120 -~~~---~~~~~~~~-------~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 158 (159)
T cd04159 120 -DEL---IEQMNLKS-------ITDREVSCYSISCKEKTNIDIVLDWLIK 158 (159)
T ss_pred -HHH---HHHhCccc-------ccCCceEEEEEEeccCCChHHHHHHHhh
Confidence 011 11111110 0123478999999999999999998864
No 141
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.69 E-value=3.1e-16 Score=167.34 Aligned_cols=163 Identities=18% Similarity=0.176 Sum_probs=106.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchhhhhh
Q 000728 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1326)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~~lr~ 875 (1326)
.|+|+|+.|+|||||+++|++..+.....+.+..++... +.... -....+.||||||++.|..++.
T Consensus 2 ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~-i~~~~-------------~~~~~l~i~Dt~G~~~~~~~~~ 67 (187)
T cd04132 2 KIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTN-IQGPN-------------GKIIELALWDTAGQEEYDRLRP 67 (187)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEE-EEecC-------------CcEEEEEEEECCCchhHHHHHH
Confidence 599999999999999999998776544333333332111 11100 0012489999999999999999
Q ss_pred hccCccceeEEeeccccCCchhHHH-HH-HHHH--hcCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000728 876 RGSGLCDIAILVVDIMHGLEPQTIE-SL-NLLK--MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1326)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E-~l-~~l~--~~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~e~~~~ 951 (1326)
.++..+|++|||+|+++....+... .| ..+. ..++|+|||+||+|+...... ...+ .
T Consensus 68 ~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~--~~~v-----------------~ 128 (187)
T cd04132 68 LSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKNL--DRKV-----------------T 128 (187)
T ss_pred HhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhCccc--cCCc-----------------C
Confidence 9999999999999998755444432 12 2222 246899999999998531000 0000 0
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHHHHH
Q 000728 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQK 1005 (1326)
Q Consensus 952 l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~q~ 1005 (1326)
...........+ ..++|++||++|.||.++|..|+..+..
T Consensus 129 ~~~~~~~~~~~~--------------~~~~~e~Sa~~~~~v~~~f~~l~~~~~~ 168 (187)
T cd04132 129 PAQAESVAKKQG--------------AFAYLECSAKTMENVEEVFDTAIEEALK 168 (187)
T ss_pred HHHHHHHHHHcC--------------CcEEEEccCCCCCCHHHHHHHHHHHHHh
Confidence 011111121221 2378999999999999999998876544
No 142
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.69 E-value=2.9e-16 Score=166.98 Aligned_cols=167 Identities=14% Similarity=0.187 Sum_probs=105.7
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchhhhh
Q 000728 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1326)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~~lr 874 (1326)
..|+|||..|+|||||+.+|....+.....+++...+.. .+.... ....|+||||||++.|..++
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~~-~~~~~~--------------~~~~l~i~Dt~G~~~~~~~~ 66 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGG--------------EPYTLGLFDTAGQEDYDRLR 66 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeEE-EEEECC--------------EEEEEEEEECCCccchhhhh
Confidence 359999999999999999999877754433433222211 111110 01248999999999999999
Q ss_pred hhccCccceeEEeeccccCCchhHHH-HH-HHHHh--cCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHHHHHH
Q 000728 875 SRGSGLCDIAILVVDIMHGLEPQTIE-SL-NLLKM--RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 950 (1326)
Q Consensus 875 ~rg~~~aDiaILVVDa~~Gv~~QT~E-~l-~~l~~--~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~e~~~ 950 (1326)
..+++.+|++|||+|+++....+... .| ..+.. .++|+|||+||+|+.. ...+...+....... .
T Consensus 67 ~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~------~~~~~~~l~~~~~~~---v-- 135 (175)
T cd01874 67 PLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD------DPSTIEKLAKNKQKP---I-- 135 (175)
T ss_pred hhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhh------ChhhHHHhhhccCCC---c--
Confidence 99999999999999998865444442 23 23322 3689999999999852 111111111100000 0
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHH
Q 000728 951 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1001 (1326)
Q Consensus 951 ~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~ 1001 (1326)
..... ..+... .+.+++++|||++|.||.++|..++.
T Consensus 136 ~~~~~-~~~a~~-------------~~~~~~~e~SA~tg~~v~~~f~~~~~ 172 (175)
T cd01874 136 TPETG-EKLARD-------------LKAVKYVECSALTQKGLKNVFDEAIL 172 (175)
T ss_pred CHHHH-HHHHHH-------------hCCcEEEEecCCCCCCHHHHHHHHHH
Confidence 00000 011110 12368999999999999999988875
No 143
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.69 E-value=1.1e-16 Score=171.06 Aligned_cols=167 Identities=17% Similarity=0.155 Sum_probs=104.8
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchh
Q 000728 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 871 (1326)
Q Consensus 792 ~R~piV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~ 871 (1326)
.|.+.|+|+|+.|+|||||+++|.+..+.. ..+.+....+ .+.+ ....+.+||||||..|.
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~~-~~~T~~~~~~--~i~~----------------~~~~~~l~D~~G~~~~~ 77 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDDRLAQ-HVPTLHPTSE--ELTI----------------GNIKFKTFDLGGHEQAR 77 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCcc-cCCccCcceE--EEEE----------------CCEEEEEEECCCCHHHH
Confidence 467889999999999999999998765431 1111111111 1111 12348899999999999
Q ss_pred hhhhhccCccceeEEeeccccCCch-hHHHHHHHHH----hcCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHH
Q 000728 872 NLRSRGSGLCDIAILVVDIMHGLEP-QTIESLNLLK----MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQN 946 (1326)
Q Consensus 872 ~lr~rg~~~aDiaILVVDa~~Gv~~-QT~E~l~~l~----~~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~ 946 (1326)
.++..++..+|++|||+|+++.-.. .....+..+. ..++|+|||+||+|+... ..
T Consensus 78 ~~~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~-------~~------------- 137 (190)
T cd00879 78 RLWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGA-------VS------------- 137 (190)
T ss_pred HHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCC-------cC-------------
Confidence 9999999999999999999864221 1223333222 246899999999998521 00
Q ss_pred HHHHHHHHHHHHHHHcCCch-hhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHH
Q 000728 947 EFNMRLVQIVTQLKEQGMNT-ELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1326)
Q Consensus 947 e~~~~l~~I~~~L~e~Gl~~-e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~ 1002 (1326)
...+...+....+.. ............+.+++|||++|.||.++|.+|.++
T Consensus 138 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 138 -----EEELRQALGLYGTTTGKGVSLKVSGIRPIEVFMCSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred -----HHHHHHHhCcccccccccccccccCceeEEEEEeEecCCCChHHHHHHHHhh
Confidence 011222221111000 000000011234689999999999999999999764
No 144
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.69 E-value=3.3e-16 Score=160.84 Aligned_cols=157 Identities=26% Similarity=0.367 Sum_probs=105.4
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCcccccc-cCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchh
Q 000728 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGE-AGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 871 (1326)
Q Consensus 793 R~piV~IlGhvdaGKTTLLd~L~~~~v~~ge-~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~ 871 (1326)
+..+|+|+|++|+|||||+++|++..+.... ....+.......+. .....+.||||||+..+.
T Consensus 2 ~~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~liDtpG~~~~~ 65 (168)
T cd04163 2 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYT----------------DDDAQIIFVDTPGIHKPK 65 (168)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEE----------------cCCeEEEEEECCCCCcch
Confidence 5678999999999999999999977543211 11111111101110 112358999999976543
Q ss_pred h--------hhhhccCccceeEEeeccccCCchhHHHHHHHHHhcCCcEEEEEeccccccCcccCCCchHHHHHHHhhHH
Q 000728 872 N--------LRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTD 943 (1326)
Q Consensus 872 ~--------lr~rg~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~ 943 (1326)
. .....+..+|++++|+|+.+.........+..+...+.|+|||+||+|+... ..
T Consensus 66 ~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~------~~----------- 128 (168)
T cd04163 66 KKLGERMVKAAWSALKDVDLVLFVVDASEPIGEGDEFILELLKKSKTPVILVLNKIDLVKD------KE----------- 128 (168)
T ss_pred HHHHHHHHHHHHHHHHhCCEEEEEEECCCccCchHHHHHHHHHHhCCCEEEEEEchhcccc------HH-----------
Confidence 2 3445688899999999999886666666677777778999999999998621 00
Q ss_pred HHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHH
Q 000728 944 VQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1326)
Q Consensus 944 ~~~e~~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~ 1002 (1326)
.+..+...+... ...++++++|++++.|+.+|+.+|.++
T Consensus 129 -------~~~~~~~~~~~~-------------~~~~~~~~~s~~~~~~~~~l~~~l~~~ 167 (168)
T cd04163 129 -------DLLPLLEKLKEL-------------GPFAEIFPISALKGENVDELLEEIVKY 167 (168)
T ss_pred -------HHHHHHHHHHhc-------------cCCCceEEEEeccCCChHHHHHHHHhh
Confidence 111122222211 123589999999999999999988654
No 145
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.69 E-value=1.6e-16 Score=165.64 Aligned_cols=156 Identities=19% Similarity=0.192 Sum_probs=105.0
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchhhhh
Q 000728 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1326)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~~lr 874 (1326)
..|+|+|.+++|||||+++|.+..+.....+.++.++....+..... ...+.||||||+..|..++
T Consensus 4 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~--------------~~~~~l~D~~g~~~~~~~~ 69 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGK--------------TIKAQIWDTAGQERYRAIT 69 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCE--------------EEEEEEEeCCChHHHHHHH
Confidence 46999999999999999999987765444444443332222222110 1238899999999999999
Q ss_pred hhccCccceeEEeeccccCCchhHHHHH-HHHHh---cCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHHHHHH
Q 000728 875 SRGSGLCDIAILVVDIMHGLEPQTIESL-NLLKM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 950 (1326)
Q Consensus 875 ~rg~~~aDiaILVVDa~~Gv~~QT~E~l-~~l~~---~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~e~~~ 950 (1326)
...+..++++|||+|+++....+.+..| ..+.. .++|+|||+||+|+... +...
T Consensus 70 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~----~~~~------------------ 127 (165)
T cd01868 70 SAYYRGAVGALLVYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHL----RAVP------------------ 127 (165)
T ss_pred HHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccc----ccCC------------------
Confidence 9999999999999999864433333322 22222 35899999999998521 0000
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHH
Q 000728 951 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1326)
Q Consensus 951 ~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~ 1002 (1326)
...+...+... .++++++||++|.||..|+.+|+..
T Consensus 128 -~~~~~~~~~~~---------------~~~~~~~Sa~~~~~v~~l~~~l~~~ 163 (165)
T cd01868 128 -TEEAKAFAEKN---------------GLSFIETSALDGTNVEEAFKQLLTE 163 (165)
T ss_pred -HHHHHHHHHHc---------------CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 01111111111 2579999999999999999998754
No 146
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.69 E-value=9.7e-17 Score=193.61 Aligned_cols=151 Identities=25% Similarity=0.342 Sum_probs=114.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCccc-ccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCc------
Q 000728 796 ICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHE------ 868 (1326)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~~~v~-~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe------ 868 (1326)
+|+|+|++|+|||||+++|++.... ....+|+|.+.....+.+. ...++||||||+.
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~----------------~~~~~liDTpG~~~~~~~~ 64 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWG----------------GREFILIDTGGIEEDDDGL 64 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEEC----------------CeEEEEEECCCCCCcchhH
Confidence 3899999999999999999987642 3445677766544443332 2349999999973
Q ss_pred --chhhhhhhccCccceeEEeeccccCCchhHHHHHHHHHhcCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHH
Q 000728 869 --SFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQN 946 (1326)
Q Consensus 869 --~F~~lr~rg~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~ 946 (1326)
.|...+..++..+|++|||||+..|+.+....++.+++..++|+|+|+||+|+... ..
T Consensus 65 ~~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~~~piilVvNK~D~~~~-----~~--------------- 124 (429)
T TIGR03594 65 DKQIREQAEIAIEEADVILFVVDGREGLTPEDEEIAKWLRKSGKPVILVANKIDGKKE-----DA--------------- 124 (429)
T ss_pred HHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEEECccCCcc-----cc---------------
Confidence 34555667889999999999999999999999999999999999999999998621 00
Q ss_pred HHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHHHH
Q 000728 947 EFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1004 (1326)
Q Consensus 947 e~~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~q 1004 (1326)
....+...|+ .+++++||.+|.||.+|++.+..+++
T Consensus 125 --------~~~~~~~lg~--------------~~~~~vSa~~g~gv~~ll~~i~~~l~ 160 (429)
T TIGR03594 125 --------VAAEFYSLGF--------------GEPIPISAEHGRGIGDLLDAILELLP 160 (429)
T ss_pred --------cHHHHHhcCC--------------CCeEEEeCCcCCChHHHHHHHHHhcC
Confidence 0011222232 36899999999999999999876553
No 147
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.69 E-value=1.4e-16 Score=168.05 Aligned_cols=153 Identities=21% Similarity=0.203 Sum_probs=100.0
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchhhh
Q 000728 794 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL 873 (1326)
Q Consensus 794 ~piV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~~l 873 (1326)
.+.|+|+|+.++|||||+.+|....+.. ..++++.++. .+. +....|.||||||+..|..+
T Consensus 9 ~~kv~i~G~~~~GKTsli~~l~~~~~~~-~~~t~g~~~~--~~~----------------~~~~~~~l~Dt~G~~~~~~~ 69 (168)
T cd04149 9 EMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNVE--TVT----------------YKNVKFNVWDVGGQDKIRPL 69 (168)
T ss_pred ccEEEEECcCCCCHHHHHHHHccCCCcc-ccCCcccceE--EEE----------------ECCEEEEEEECCCCHHHHHH
Confidence 4579999999999999999997654431 1121111111 111 11134999999999999999
Q ss_pred hhhccCccceeEEeeccccCCch-hHHHHHHHH-H---hcCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHHHH
Q 000728 874 RSRGSGLCDIAILVVDIMHGLEP-QTIESLNLL-K---MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEF 948 (1326)
Q Consensus 874 r~rg~~~aDiaILVVDa~~Gv~~-QT~E~l~~l-~---~~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~e~ 948 (1326)
+..+++.||++|||+|+++.... .....|..+ . ..++|+|||+||+|+...+ .
T Consensus 70 ~~~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~------~---------------- 127 (168)
T cd04149 70 WRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAM------K---------------- 127 (168)
T ss_pred HHHHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCC------C----------------
Confidence 99999999999999999874322 222333322 2 2358999999999985210 0
Q ss_pred HHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHH
Q 000728 949 NMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLV 1000 (1326)
Q Consensus 949 ~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~ 1000 (1326)
...+...+ ++.. .....+++++|||++|.||.++|.+|.
T Consensus 128 ---~~~i~~~~---~~~~-------~~~~~~~~~~~SAk~g~gv~~~~~~l~ 166 (168)
T cd04149 128 ---PHEIQEKL---GLTR-------IRDRNWYVQPSCATSGDGLYEGLTWLS 166 (168)
T ss_pred ---HHHHHHHc---CCCc-------cCCCcEEEEEeeCCCCCChHHHHHHHh
Confidence 01111111 1100 011335799999999999999999885
No 148
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.69 E-value=1.7e-16 Score=172.15 Aligned_cols=157 Identities=16% Similarity=0.127 Sum_probs=105.4
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchhhhh
Q 000728 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1326)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~~lr 874 (1326)
+.|+|||+.|+|||||+++|.+..+.....++++.++....+.+.. ....+.||||||++.|..++
T Consensus 7 ~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~--------------~~~~l~l~D~~G~~~~~~~~ 72 (199)
T cd04110 7 FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEING--------------ERVKLQIWDTAGQERFRTIT 72 (199)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECC--------------EEEEEEEEeCCCchhHHHHH
Confidence 5699999999999999999998766543333333222222221111 01238899999999999999
Q ss_pred hhccCccceeEEeeccccCCchhHHHH-HHHHHh--cCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000728 875 SRGSGLCDIAILVVDIMHGLEPQTIES-LNLLKM--RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1326)
Q Consensus 875 ~rg~~~aDiaILVVDa~~Gv~~QT~E~-l~~l~~--~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~e~~~~ 951 (1326)
..+++.+|++|||+|+++....+.... +..+.. ..+|+|||+||+|+... ....
T Consensus 73 ~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl~~~----~~~~------------------- 129 (199)
T cd04110 73 STYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDPER----KVVE------------------- 129 (199)
T ss_pred HHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccc----cccC-------------------
Confidence 999999999999999987544333332 233322 25899999999998631 0000
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHHH
Q 000728 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1326)
Q Consensus 952 l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1326)
...+...+... .+++++|||++|.||.+||.+|+..+
T Consensus 130 ~~~~~~~~~~~---------------~~~~~e~Sa~~~~gi~~lf~~l~~~~ 166 (199)
T cd04110 130 TEDAYKFAGQM---------------GISLFETSAKENINVEEMFNCITELV 166 (199)
T ss_pred HHHHHHHHHHc---------------CCEEEEEECCCCcCHHHHHHHHHHHH
Confidence 00111111111 15799999999999999999998755
No 149
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.69 E-value=2e-16 Score=167.62 Aligned_cols=153 Identities=26% Similarity=0.284 Sum_probs=100.7
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchhhhh
Q 000728 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1326)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~~lr 874 (1326)
..|+|+|+.++|||||+++|....+.. . ..+++..+..+. +....+.||||||+..|..++
T Consensus 16 ~kv~~~G~~~~GKTsl~~~l~~~~~~~-~----~~t~~~~~~~~~--------------~~~~~~~l~D~~G~~~~~~~~ 76 (174)
T cd04153 16 YKVIIVGLDNAGKTTILYQFLLGEVVH-T----SPTIGSNVEEIV--------------YKNIRFLMWDIGGQESLRSSW 76 (174)
T ss_pred cEEEEECCCCCCHHHHHHHHccCCCCC-c----CCccccceEEEE--------------ECCeEEEEEECCCCHHHHHHH
Confidence 469999999999999999998765432 1 122222211110 112349999999999999999
Q ss_pred hhccCccceeEEeeccccCCchh-HHHHHH-HHHh---cCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHHHHH
Q 000728 875 SRGSGLCDIAILVVDIMHGLEPQ-TIESLN-LLKM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 949 (1326)
Q Consensus 875 ~rg~~~aDiaILVVDa~~Gv~~Q-T~E~l~-~l~~---~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~e~~ 949 (1326)
..++..||++|||+|+++..... ....|. ++.. .++|+||++||+|+...+ +
T Consensus 77 ~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~------~----------------- 133 (174)
T cd04153 77 NTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAM------T----------------- 133 (174)
T ss_pred HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCC------C-----------------
Confidence 99999999999999998753221 122232 2222 358999999999985210 0
Q ss_pred HHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHH
Q 000728 950 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1001 (1326)
Q Consensus 950 ~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~ 1001 (1326)
...+...+ ++.. .. ...+++++|||++|.||.+++.+|..
T Consensus 134 --~~~i~~~l---~~~~---~~----~~~~~~~~~SA~~g~gi~e~~~~l~~ 173 (174)
T cd04153 134 --PAEISESL---GLTS---IR----DHTWHIQGCCALTGEGLPEGLDWIAS 173 (174)
T ss_pred --HHHHHHHh---Cccc---cc----CCceEEEecccCCCCCHHHHHHHHhc
Confidence 01111112 1110 00 12368999999999999999998863
No 150
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.69 E-value=2.1e-16 Score=166.30 Aligned_cols=159 Identities=15% Similarity=0.145 Sum_probs=106.2
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchh-
Q 000728 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT- 871 (1326)
Q Consensus 793 R~piV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~- 871 (1326)
|...|+|+|+.|+|||||+++|+...+.......++.++....+.+.. ....+.||||||+..|.
T Consensus 1 r~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--------------~~~~~~i~Dt~G~~~~~~ 66 (170)
T cd04115 1 RIFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDG--------------ERIKVQLWDTAGQERFRK 66 (170)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECC--------------eEEEEEEEeCCChHHHHH
Confidence 456799999999999999999997766543333333222211221111 11248999999999997
Q ss_pred hhhhhccCccceeEEeeccccCCchhHHHHHH-HHHh----cCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHH
Q 000728 872 NLRSRGSGLCDIAILVVDIMHGLEPQTIESLN-LLKM----RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQN 946 (1326)
Q Consensus 872 ~lr~rg~~~aDiaILVVDa~~Gv~~QT~E~l~-~l~~----~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~ 946 (1326)
.++..+++.+|++|||+|+++....+....|. .+.. .++|+|||+||+|+... ...
T Consensus 67 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~----~~~--------------- 127 (170)
T cd04115 67 SMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQ----IQV--------------- 127 (170)
T ss_pred hhHHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhh----cCC---------------
Confidence 57888899999999999999876666665553 3332 35899999999998521 000
Q ss_pred HHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcC---CCChhhHHHHHHHHH
Q 000728 947 EFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAIS---GEGIPDLLLLLVQWT 1003 (1326)
Q Consensus 947 e~~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~t---GeGI~eLl~~L~~~~ 1003 (1326)
.......+... ..+++++|||++ +.||.++|..|+..+
T Consensus 128 -----~~~~~~~~~~~--------------~~~~~~e~Sa~~~~~~~~i~~~f~~l~~~~ 168 (170)
T cd04115 128 -----PTDLAQRFADA--------------HSMPLFETSAKDPSENDHVEAIFMTLAHKL 168 (170)
T ss_pred -----CHHHHHHHHHH--------------cCCcEEEEeccCCcCCCCHHHHHHHHHHHh
Confidence 00111112111 126899999999 888888888776543
No 151
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.69 E-value=2.5e-16 Score=169.76 Aligned_cols=171 Identities=19% Similarity=0.227 Sum_probs=107.2
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchhh
Q 000728 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 872 (1326)
Q Consensus 793 R~piV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~~ 872 (1326)
+...|+|+|..++|||||+.+|....+.....+.+ +..+...-.+. -....|+||||||++.|..
T Consensus 2 ~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~----~~~~~~~~~~~-----------~~~~~l~i~Dt~G~e~~~~ 66 (191)
T cd01875 2 QSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTV----FDNYSAQTAVD-----------GRTVSLNLWDTAGQEEYDR 66 (191)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCce----EeeeEEEEEEC-----------CEEEEEEEEECCCchhhhh
Confidence 45679999999999999999999877654333332 22211000000 0112489999999999999
Q ss_pred hhhhccCccceeEEeeccccCCchhHHH-HH-HHHHh--cCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHHHH
Q 000728 873 LRSRGSGLCDIAILVVDIMHGLEPQTIE-SL-NLLKM--RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEF 948 (1326)
Q Consensus 873 lr~rg~~~aDiaILVVDa~~Gv~~QT~E-~l-~~l~~--~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~e~ 948 (1326)
++..+++.+|++|||+|+++....+... .| ..+.. .++|+|||+||+|+... ......+.... +.
T Consensus 67 l~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~------~~~~~~~~~~~--~~--- 135 (191)
T cd01875 67 LRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRND------ADTLKKLKEQG--QA--- 135 (191)
T ss_pred hhhhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcC------hhhHHHHhhcc--CC---
Confidence 9999999999999999998855444443 23 22222 46899999999998521 11101100000 00
Q ss_pred HHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHHH
Q 000728 949 NMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1326)
Q Consensus 949 ~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1326)
....... ..+... + +.+++++|||++|.||.++|.+|+..+
T Consensus 136 ~v~~~~~-~~~a~~------------~-~~~~~~e~SAk~g~~v~e~f~~l~~~~ 176 (191)
T cd01875 136 PITPQQG-GALAKQ------------I-HAVKYLECSALNQDGVKEVFAEAVRAV 176 (191)
T ss_pred CCCHHHH-HHHHHH------------c-CCcEEEEeCCCCCCCHHHHHHHHHHHH
Confidence 0000000 111110 0 235899999999999999999988654
No 152
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.69 E-value=1.4e-16 Score=164.88 Aligned_cols=151 Identities=23% Similarity=0.288 Sum_probs=100.3
Q ss_pred EEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchhhhhhh
Q 000728 797 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSR 876 (1326)
Q Consensus 797 V~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~~lr~r 876 (1326)
|+|+|+.|+|||||+++|++...... +..++.....+ .+....+.||||||+..|..++..
T Consensus 2 i~iiG~~~~GKssli~~~~~~~~~~~-----~~t~~~~~~~~--------------~~~~~~~~i~D~~G~~~~~~~~~~ 62 (158)
T cd00878 2 ILILGLDGAGKTTILYKLKLGEVVTT-----IPTIGFNVETV--------------EYKNVSFTVWDVGGQDKIRPLWKH 62 (158)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCC-----CCCcCcceEEE--------------EECCEEEEEEECCCChhhHHHHHH
Confidence 89999999999999999998763211 11111111110 011235999999999999999999
Q ss_pred ccCccceeEEeeccccCCc-hhHHHHHHHH----HhcCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000728 877 GSGLCDIAILVVDIMHGLE-PQTIESLNLL----KMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1326)
Q Consensus 877 g~~~aDiaILVVDa~~Gv~-~QT~E~l~~l----~~~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~e~~~~ 951 (1326)
.+..+|++|+|+|++.+-. ......+..+ ...++|+|||+||+|+... ..
T Consensus 63 ~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~------~~------------------- 117 (158)
T cd00878 63 YYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGA------LS------------------- 117 (158)
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccc------cC-------------------
Confidence 9999999999999987521 2223333322 2347899999999998621 00
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHH
Q 000728 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1001 (1326)
Q Consensus 952 l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~ 1001 (1326)
...+...+..... ....++++++||++|.|+.+++.+|..
T Consensus 118 ~~~~~~~~~~~~~----------~~~~~~~~~~Sa~~~~gv~~~~~~l~~ 157 (158)
T cd00878 118 VSELIEKLGLEKI----------LGRRWHIQPCSAVTGDGLDEGLDWLLQ 157 (158)
T ss_pred HHHHHHhhChhhc----------cCCcEEEEEeeCCCCCCHHHHHHHHhh
Confidence 1111111211100 123579999999999999999998863
No 153
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.69 E-value=2.5e-16 Score=169.46 Aligned_cols=158 Identities=18% Similarity=0.168 Sum_probs=104.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCcccccc-cCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchhhhh
Q 000728 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGE-AGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1326)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~~~v~~ge-~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~~lr 874 (1326)
.|+|+|.+|+|||||+++|...++..+. ..+++.++....+.+... ...++||||||+..|..++
T Consensus 2 Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~--------------~~~~~i~Dt~G~~~~~~~~ 67 (191)
T cd04112 2 KVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGV--------------KVKLQIWDTAGQERFRSVT 67 (191)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCE--------------EEEEEEEeCCCcHHHHHhh
Confidence 5899999999999999999987765332 222222222111211110 1248999999999999999
Q ss_pred hhccCccceeEEeeccccCCchhHHHH-HHHHHh---cCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHHHHHH
Q 000728 875 SRGSGLCDIAILVVDIMHGLEPQTIES-LNLLKM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 950 (1326)
Q Consensus 875 ~rg~~~aDiaILVVDa~~Gv~~QT~E~-l~~l~~---~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~e~~~ 950 (1326)
..+++.+|++|||+|+++....+.... +..+.. .++|+|||+||+|+... +...
T Consensus 68 ~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~----~~~~------------------ 125 (191)
T cd04112 68 HAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGE----RVVK------------------ 125 (191)
T ss_pred HHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhc----cccC------------------
Confidence 999999999999999987543332222 223322 36899999999998521 0000
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHHHHH
Q 000728 951 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQK 1005 (1326)
Q Consensus 951 ~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~q~ 1005 (1326)
...+......+ .++++++||++|.||.+||.+|+..+..
T Consensus 126 -~~~~~~l~~~~---------------~~~~~e~Sa~~~~~v~~l~~~l~~~~~~ 164 (191)
T cd04112 126 -REDGERLAKEY---------------GVPFMETSAKTGLNVELAFTAVAKELKH 164 (191)
T ss_pred -HHHHHHHHHHc---------------CCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 00011111111 1589999999999999999999876643
No 154
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.68 E-value=2.5e-16 Score=164.55 Aligned_cols=151 Identities=22% Similarity=0.228 Sum_probs=98.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchhhhhh
Q 000728 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1326)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~~lr~ 875 (1326)
.|+|+|+.++|||||+.+|....+.. ..+++..++. .+. +....+.||||||+..|..++.
T Consensus 2 kv~~~G~~~~GKTsli~~l~~~~~~~-~~pt~g~~~~--~~~----------------~~~~~~~l~D~~G~~~~~~~~~ 62 (159)
T cd04150 2 RILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVE----------------YKNISFTVWDVGGQDKIRPLWR 62 (159)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCcc-cCCCCCcceE--EEE----------------ECCEEEEEEECCCCHhHHHHHH
Confidence 48999999999999999997655432 1111111110 111 1113489999999999999999
Q ss_pred hccCccceeEEeeccccCCc-hhHHHHHHHH-Hh---cCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHHHHHH
Q 000728 876 RGSGLCDIAILVVDIMHGLE-PQTIESLNLL-KM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 950 (1326)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~-~QT~E~l~~l-~~---~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~e~~~ 950 (1326)
.+++.||++|||+|+++... .+....|..+ .. .++|+||++||+|+... ..
T Consensus 63 ~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~------~~------------------ 118 (159)
T cd04150 63 HYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNA------MS------------------ 118 (159)
T ss_pred HHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCC------CC------------------
Confidence 99999999999999976322 1222333322 21 35899999999998521 00
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHH
Q 000728 951 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLV 1000 (1326)
Q Consensus 951 ~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~ 1000 (1326)
...+...+ +++. + ....+.+++|||++|.||.++|.+|.
T Consensus 119 -~~~i~~~~---~~~~--~-----~~~~~~~~~~Sak~g~gv~~~~~~l~ 157 (159)
T cd04150 119 -AAEVTDKL---GLHS--L-----RNRNWYIQATCATSGDGLYEGLDWLS 157 (159)
T ss_pred -HHHHHHHh---Cccc--c-----CCCCEEEEEeeCCCCCCHHHHHHHHh
Confidence 01111112 2210 0 12345788999999999999999885
No 155
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.68 E-value=2.4e-16 Score=159.54 Aligned_cols=151 Identities=23% Similarity=0.275 Sum_probs=100.6
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchhhhh
Q 000728 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1326)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~~lr 874 (1326)
+.|+|+|++|+|||||+++|....+......+++.++....+..... ...+.|||||||..|..++
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~D~~G~~~~~~~~ 67 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGK--------------TYKFNLLDTAGQEDYRAIR 67 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCE--------------EEEEEEEECCCcccchHHH
Confidence 46999999999999999999988766555566766665443333210 0248899999999997776
Q ss_pred hhccCccceeEEeecccc-------CCchhHHHHHHHHHhcCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHHH
Q 000728 875 SRGSGLCDIAILVVDIMH-------GLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNE 947 (1326)
Q Consensus 875 ~rg~~~aDiaILVVDa~~-------Gv~~QT~E~l~~l~~~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~e 947 (1326)
...+..++.+|+++|... +........+.++.. ++|+|||+||+|+... .+.
T Consensus 68 ~~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~-~~p~ivv~nK~D~~~~-------~~~------------- 126 (161)
T TIGR00231 68 RLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAES-NVPIILVGNKIDLRDA-------KLK------------- 126 (161)
T ss_pred HHHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhccc-CCcEEEEEEcccCCcc-------hhh-------------
Confidence 666666666665555543 333333333343333 8899999999998621 010
Q ss_pred HHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHH
Q 000728 948 FNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLL 999 (1326)
Q Consensus 948 ~~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L 999 (1326)
..+...+... ...+++++||.+|.||.+++.+|
T Consensus 127 -----~~~~~~~~~~--------------~~~~~~~~sa~~~~gv~~~~~~l 159 (161)
T TIGR00231 127 -----THVAFLFAKL--------------NGEPIIPLSAETGKNIDSAFKIV 159 (161)
T ss_pred -----HHHHHHHhhc--------------cCCceEEeecCCCCCHHHHHHHh
Confidence 1111112211 12469999999999999998876
No 156
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.68 E-value=2.2e-16 Score=164.26 Aligned_cols=155 Identities=19% Similarity=0.144 Sum_probs=100.6
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchhhhh
Q 000728 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1326)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~~lr 874 (1326)
..|+|+|.+|+|||||+.+++...+.....+.+. ......+.... ....+.||||||++.|..++
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~--------------~~~~l~i~Dt~G~~~~~~~~ 66 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDS--------------SPSVLEILDTAGTEQFASMR 66 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEECC--------------EEEEEEEEECCCcccccchH
Confidence 3699999999999999999998766433222111 11111111110 01238899999999999999
Q ss_pred hhccCccceeEEeeccccCCchhHHH-HHHHHHh----cCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHHHHH
Q 000728 875 SRGSGLCDIAILVVDIMHGLEPQTIE-SLNLLKM----RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 949 (1326)
Q Consensus 875 ~rg~~~aDiaILVVDa~~Gv~~QT~E-~l~~l~~----~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~e~~ 949 (1326)
..++..+|++|||+|+++....+... ++..+.. .++|+|||+||+|+... ..+.
T Consensus 67 ~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~------~~~~--------------- 125 (163)
T cd04176 67 DLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESE------REVS--------------- 125 (163)
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhc------CccC---------------
Confidence 99999999999999998744322222 2222222 47899999999998521 0000
Q ss_pred HHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHH
Q 000728 950 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1326)
Q Consensus 950 ~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~ 1002 (1326)
.... ..+.. .+ .+++|+|||++|.||.+++.+|+..
T Consensus 126 --~~~~-~~~~~------------~~--~~~~~~~Sa~~~~~v~~l~~~l~~~ 161 (163)
T cd04176 126 --SAEG-RALAE------------EW--GCPFMETSAKSKTMVNELFAEIVRQ 161 (163)
T ss_pred --HHHH-HHHHH------------Hh--CCEEEEecCCCCCCHHHHHHHHHHh
Confidence 0000 11111 01 1589999999999999999988753
No 157
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.68 E-value=3.7e-16 Score=167.17 Aligned_cols=157 Identities=22% Similarity=0.202 Sum_probs=103.0
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchhh
Q 000728 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 872 (1326)
Q Consensus 793 R~piV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~~ 872 (1326)
+...|+|+|..++|||||+.+|....+.. ..+++..++ ..+. +....++||||||+..|..
T Consensus 16 ~~~ki~ivG~~~~GKTsl~~~l~~~~~~~-~~pt~g~~~--~~~~----------------~~~~~~~i~D~~Gq~~~~~ 76 (181)
T PLN00223 16 KEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV--ETVE----------------YKNISFTVWDVGGQDKIRP 76 (181)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCcc-ccCCcceeE--EEEE----------------ECCEEEEEEECCCCHHHHH
Confidence 34569999999999999999998655432 122222111 1111 1123499999999999999
Q ss_pred hhhhccCccceeEEeeccccCCchh-HHHHHHHHHh----cCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHHH
Q 000728 873 LRSRGSGLCDIAILVVDIMHGLEPQ-TIESLNLLKM----RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNE 947 (1326)
Q Consensus 873 lr~rg~~~aDiaILVVDa~~Gv~~Q-T~E~l~~l~~----~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~e 947 (1326)
++..+++.+|++|||+|+++..... ....|..+.. .++|+|||+||+|+.... .
T Consensus 77 ~~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~------~--------------- 135 (181)
T PLN00223 77 LWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM------N--------------- 135 (181)
T ss_pred HHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCC------C---------------
Confidence 9999999999999999998743222 1222332221 368999999999986310 0
Q ss_pred HHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHHH
Q 000728 948 FNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1326)
Q Consensus 948 ~~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1326)
...+...| |+.. + -...+.+++|||+||+||.+++.+|...+
T Consensus 136 ----~~~~~~~l---~l~~-~------~~~~~~~~~~Sa~~g~gv~e~~~~l~~~~ 177 (181)
T PLN00223 136 ----AAEITDKL---GLHS-L------RQRHWYIQSTCATSGEGLYEGLDWLSNNI 177 (181)
T ss_pred ----HHHHHHHh---Cccc-c------CCCceEEEeccCCCCCCHHHHHHHHHHHH
Confidence 01121122 2210 0 01235688999999999999999987543
No 158
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.68 E-value=3.8e-16 Score=165.83 Aligned_cols=156 Identities=22% Similarity=0.200 Sum_probs=102.6
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchhhh
Q 000728 794 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL 873 (1326)
Q Consensus 794 ~piV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~~l 873 (1326)
.+.|+|+|+.++|||||+.+|....+.. ..+ ++|..+.... +....+.||||||+..|..+
T Consensus 13 ~~ki~l~G~~~~GKTsL~~~~~~~~~~~-~~~----t~~~~~~~~~--------------~~~~~l~l~D~~G~~~~~~~ 73 (175)
T smart00177 13 EMRILMVGLDAAGKTTILYKLKLGESVT-TIP----TIGFNVETVT--------------YKNISFTVWDVGGQDKIRPL 73 (175)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCCC-cCC----ccccceEEEE--------------ECCEEEEEEECCCChhhHHH
Confidence 4669999999999999999997554421 112 2221111110 11234899999999999999
Q ss_pred hhhccCccceeEEeeccccCCc-hhHHHHHHHHHh----cCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHHHH
Q 000728 874 RSRGSGLCDIAILVVDIMHGLE-PQTIESLNLLKM----RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEF 948 (1326)
Q Consensus 874 r~rg~~~aDiaILVVDa~~Gv~-~QT~E~l~~l~~----~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~e~ 948 (1326)
+..+++.||++|||+|+++... ....+.|..+.. .++|++||+||+|+...+ +
T Consensus 74 ~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~------~---------------- 131 (175)
T smart00177 74 WRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAM------K---------------- 131 (175)
T ss_pred HHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCC------C----------------
Confidence 9999999999999999986422 222334433322 358999999999985211 0
Q ss_pred HHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHHH
Q 000728 949 NMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1326)
Q Consensus 949 ~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1326)
...+... .++... ....+.+++|||++|.||.++|.+|...+
T Consensus 132 ---~~~i~~~---~~~~~~-------~~~~~~~~~~Sa~~g~gv~e~~~~l~~~~ 173 (175)
T smart00177 132 ---AAEITEK---LGLHSI-------RDRNWYIQPTCATSGDGLYEGLTWLSNNL 173 (175)
T ss_pred ---HHHHHHH---hCcccc-------CCCcEEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 0111111 122100 12346788999999999999999987643
No 159
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.68 E-value=2.3e-16 Score=171.10 Aligned_cols=150 Identities=23% Similarity=0.288 Sum_probs=96.6
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcc----
Q 000728 794 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES---- 869 (1326)
Q Consensus 794 ~piV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~---- 869 (1326)
.++|+|||++|||||||+++|++..+......+.|.......+.+. ....++||||||+..
T Consensus 41 ~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~---------------~~~~~~i~Dt~G~~~~~~~ 105 (204)
T cd01878 41 IPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLP---------------DGREVLLTDTVGFIRDLPH 105 (204)
T ss_pred CCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEec---------------CCceEEEeCCCccccCCCH
Confidence 3679999999999999999999876433322232322211111111 112599999999833
Q ss_pred -----hhhhhhhccCccceeEEeeccccCCchhHHHH-HHHH---HhcCCcEEEEEeccccccCcccCCCchHHHHHHHh
Q 000728 870 -----FTNLRSRGSGLCDIAILVVDIMHGLEPQTIES-LNLL---KMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQ 940 (1326)
Q Consensus 870 -----F~~lr~rg~~~aDiaILVVDa~~Gv~~QT~E~-l~~l---~~~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q 940 (1326)
|...+ ..+..+|++|+|+|++++........ ...+ ...++|+|||+||+|+...+ .
T Consensus 106 ~~~~~~~~~~-~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~------~-------- 170 (204)
T cd01878 106 QLVEAFRSTL-EEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDE------E-------- 170 (204)
T ss_pred HHHHHHHHHH-HHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChH------H--------
Confidence 22222 23567999999999998765443322 2333 33468999999999986310 0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHH
Q 000728 941 NTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1326)
Q Consensus 941 ~~~~~~e~~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~ 1002 (1326)
+...+. ...++++++||++|.||.+++.+|...
T Consensus 171 --------------~~~~~~---------------~~~~~~~~~Sa~~~~gi~~l~~~L~~~ 203 (204)
T cd01878 171 --------------LEERLE---------------AGRPDAVFISAKTGEGLDELLEAIEEL 203 (204)
T ss_pred --------------HHHHhh---------------cCCCceEEEEcCCCCCHHHHHHHHHhh
Confidence 000010 123689999999999999999988754
No 160
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.68 E-value=3.3e-16 Score=167.78 Aligned_cols=163 Identities=17% Similarity=0.161 Sum_probs=104.2
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchh
Q 000728 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 871 (1326)
Q Consensus 792 ~R~piV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~ 871 (1326)
.|.+.|+|+|.+|+|||||+++|.+..+... .+++...++ .+. +....+.||||||+..|.
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~~-~~t~~~~~~--~~~----------------~~~~~~~~~D~~G~~~~~ 75 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQH-QPTQHPTSE--ELA----------------IGNIKFTTFDLGGHQQAR 75 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCccc-CCccccceE--EEE----------------ECCEEEEEEECCCCHHHH
Confidence 3457799999999999999999987654321 111111111 111 112348999999999999
Q ss_pred hhhhhccCccceeEEeeccccCCch-hHHHHHHHHH----hcCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHH
Q 000728 872 NLRSRGSGLCDIAILVVDIMHGLEP-QTIESLNLLK----MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQN 946 (1326)
Q Consensus 872 ~lr~rg~~~aDiaILVVDa~~Gv~~-QT~E~l~~l~----~~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~ 946 (1326)
.++..++..+|++|+|||+++.... .....+..+. ..++|+|||+||+|+.... +
T Consensus 76 ~~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~------~-------------- 135 (184)
T smart00178 76 RLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAA------S-------------- 135 (184)
T ss_pred HHHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCC------C--------------
Confidence 9999999999999999999874221 2222333222 2478999999999985310 0
Q ss_pred HHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHH
Q 000728 947 EFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1001 (1326)
Q Consensus 947 e~~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~ 1001 (1326)
...+...| ++............+.+.+++|||++|.|+.++++||..
T Consensus 136 -----~~~i~~~l---~l~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~~~~wl~~ 182 (184)
T smart00178 136 -----EDELRYAL---GLTNTTGSKGKVGVRPLEVFMCSVVRRMGYGEGFKWLSQ 182 (184)
T ss_pred -----HHHHHHHc---CCCcccccccccCCceeEEEEeecccCCChHHHHHHHHh
Confidence 11122222 111000000000114568999999999999999999864
No 161
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.68 E-value=5.5e-16 Score=166.30 Aligned_cols=156 Identities=21% Similarity=0.305 Sum_probs=104.9
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCc-c-cccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCc--
Q 000728 793 RSPICCIMGHVDTGKTKLLDCIRGTN-V-QEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHE-- 868 (1326)
Q Consensus 793 R~piV~IlGhvdaGKTTLLd~L~~~~-v-~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe-- 868 (1326)
+.|.|+|+|++|+|||||+++|++.. + ......|.|+.+..+.+ ...|+||||||+.
T Consensus 23 ~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~-------------------~~~l~l~DtpG~~~~ 83 (196)
T PRK00454 23 DGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV-------------------NDKLRLVDLPGYGYA 83 (196)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec-------------------CCeEEEeCCCCCCCc
Confidence 44679999999999999999999764 2 22223445544432221 1359999999963
Q ss_pred --------chhhhhhhccC---ccceeEEeeccccCCchhHHHHHHHHHhcCCcEEEEEeccccccCcccCCCchHHHHH
Q 000728 869 --------SFTNLRSRGSG---LCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAI 937 (1326)
Q Consensus 869 --------~F~~lr~rg~~---~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~vP~IVvINKiD~~~~w~~~~~a~~~~~L 937 (1326)
.|..+...++. .++++++|+|+..+........+..+...++|+++++||+|+..++ ..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~~~~~~iiv~nK~Dl~~~~------~~---- 153 (196)
T PRK00454 84 KVSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKEYGIPVLIVLTKADKLKKG------ER---- 153 (196)
T ss_pred CCCchHHHHHHHHHHHHHHhCccceEEEEEEecCCCCCHHHHHHHHHHHHcCCcEEEEEECcccCCHH------HH----
Confidence 34444444443 4578889999988887777677777777899999999999986321 00
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHHH
Q 000728 938 KQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1326)
Q Consensus 938 ~~q~~~~~~e~~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1326)
......+...+... .++++++||++|.|+.+++..|..++
T Consensus 154 -----------~~~~~~i~~~l~~~---------------~~~~~~~Sa~~~~gi~~l~~~i~~~~ 193 (196)
T PRK00454 154 -----------KKQLKKVRKALKFG---------------DDEVILFSSLKKQGIDELRAAIAKWL 193 (196)
T ss_pred -----------HHHHHHHHHHHHhc---------------CCceEEEEcCCCCCHHHHHHHHHHHh
Confidence 00011111122111 25889999999999999999887654
No 162
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.68 E-value=2.7e-16 Score=169.07 Aligned_cols=168 Identities=15% Similarity=0.134 Sum_probs=105.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchhhhhh
Q 000728 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1326)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~~lr~ 875 (1326)
.|+|+|..|+|||||+.+|++..+.....+.+...... .+... .....|+||||||++.|..++.
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~-~i~~~--------------~~~~~l~i~Dt~G~~~~~~l~~ 66 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYVH-DIFVD--------------GLHIELSLWDTAGQEEFDRLRS 66 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeEE-EEEEC--------------CEEEEEEEEECCCChhcccccc
Confidence 48999999999999999999877654322222221110 00000 0112489999999999999999
Q ss_pred hccCccceeEEeeccccCCchhHHH--HHHHHHh--cCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000728 876 RGSGLCDIAILVVDIMHGLEPQTIE--SLNLLKM--RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1326)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E--~l~~l~~--~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~e~~~~ 951 (1326)
.+++.+|++|||+|+++.-..+... ++..+.. .++|+|||+||+|+... ......+.. .... ...
T Consensus 67 ~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~------~~~~~~~~~----~~~~-~v~ 135 (189)
T cd04134 67 LSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREA------RNERDDLQR----YGKH-TIS 135 (189)
T ss_pred ccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccC------hhhHHHHhh----ccCC-CCC
Confidence 9999999999999998865554443 2333433 37899999999998621 000000000 0000 000
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHHH
Q 000728 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1326)
Q Consensus 952 l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1326)
.......+... +.+++++|||++|.||.++|.+|+..+
T Consensus 136 ~~~~~~~~~~~--------------~~~~~~e~SAk~~~~v~e~f~~l~~~~ 173 (189)
T cd04134 136 YEEGLAVAKRI--------------NALRYLECSAKLNRGVNEAFTEAARVA 173 (189)
T ss_pred HHHHHHHHHHc--------------CCCEEEEccCCcCCCHHHHHHHHHHHH
Confidence 00111111111 236899999999999999999987654
No 163
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.68 E-value=5.5e-16 Score=162.98 Aligned_cols=166 Identities=17% Similarity=0.188 Sum_probs=102.7
Q ss_pred EEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchhhhhhh
Q 000728 797 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSR 876 (1326)
Q Consensus 797 V~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~~lr~r 876 (1326)
|+|+|..|+|||||+++|++..+.....+.+..... ..+.... ....+.||||||+..|..++..
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--------------~~~~~~i~Dt~G~~~~~~~~~~ 65 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYS-ADVEVDG--------------KPVELGLWDTAGQEDYDRLRPL 65 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeee-EEEEECC--------------EEEEEEEEECCCCcccchhchh
Confidence 689999999999999999987765433333222211 1111110 1124899999999999999999
Q ss_pred ccCccceeEEeeccccCCchhHHH--HHHHHHh--cCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHHHHHHHH
Q 000728 877 GSGLCDIAILVVDIMHGLEPQTIE--SLNLLKM--RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRL 952 (1326)
Q Consensus 877 g~~~aDiaILVVDa~~Gv~~QT~E--~l~~l~~--~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~e~~~~l 952 (1326)
++..+|++|||+|+++.-..+.+. ++..+.. .++|+|||+||+|+... ......+...... ....
T Consensus 66 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~------~~~~~~~~~~~~~-----~v~~ 134 (174)
T smart00174 66 SYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLRED------KSTLRELSKQKQE-----PVTY 134 (174)
T ss_pred hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhC------hhhhhhhhcccCC-----CccH
Confidence 999999999999998743322221 2233332 37999999999998631 1000000000000 0000
Q ss_pred HHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHH
Q 000728 953 VQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1326)
Q Consensus 953 ~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~ 1002 (1326)
.......... +.+++++|||++|.||.+||..|+..
T Consensus 135 ~~~~~~~~~~--------------~~~~~~e~Sa~~~~~v~~lf~~l~~~ 170 (174)
T smart00174 135 EQGEALAKRI--------------GAVKYLECSALTQEGVREVFEEAIRA 170 (174)
T ss_pred HHHHHHHHHc--------------CCcEEEEecCCCCCCHHHHHHHHHHH
Confidence 1111111111 22479999999999999999998754
No 164
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.68 E-value=4.3e-16 Score=163.79 Aligned_cols=166 Identities=18% Similarity=0.215 Sum_probs=104.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchhhhhh
Q 000728 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1326)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~~lr~ 875 (1326)
.|+|||++++|||||+++|++..+.....+.+...+ ...+.... ....+.||||||+..|..++.
T Consensus 2 ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~--------------~~~~~~i~Dt~G~~~~~~~~~ 66 (174)
T cd04135 2 KCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGG--------------KQYLLGLYDTAGQEDYDRLRP 66 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-EEEEEECC--------------EEEEEEEEeCCCccccccccc
Confidence 599999999999999999998876544333322111 11121111 112378999999999999999
Q ss_pred hccCccceeEEeeccccCCchhHHH--HHHHHH--hcCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000728 876 RGSGLCDIAILVVDIMHGLEPQTIE--SLNLLK--MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1326)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E--~l~~l~--~~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~e~~~~ 951 (1326)
..++.+|++|||+|+.+.-..+.+. ++..++ ..++|+|||+||+|+... ......+...... ...
T Consensus 67 ~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~------~~~~~~~~~~~~~-----~v~ 135 (174)
T cd04135 67 LSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDD------PKTLARLNDMKEK-----PVT 135 (174)
T ss_pred ccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcC------hhhHHHHhhccCC-----CCC
Confidence 9999999999999998754433332 222332 357999999999998531 1111111000000 000
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHH
Q 000728 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1001 (1326)
Q Consensus 952 l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~ 1001 (1326)
.......+... +..++++|||++|.||.++|..++.
T Consensus 136 ~~~~~~~~~~~--------------~~~~~~e~Sa~~~~gi~~~f~~~~~ 171 (174)
T cd04135 136 VEQGQKLAKEI--------------GAHCYVECSALTQKGLKTVFDEAIL 171 (174)
T ss_pred HHHHHHHHHHc--------------CCCEEEEecCCcCCCHHHHHHHHHH
Confidence 01111112221 2247999999999999999998875
No 165
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.68 E-value=3.3e-16 Score=161.45 Aligned_cols=155 Identities=23% Similarity=0.201 Sum_probs=103.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchhhhhh
Q 000728 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1326)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~~lr~ 875 (1326)
.|+|+|++|+|||||+++|++..+.....+.++..+....+.+.. ....+++|||||+..|..++.
T Consensus 2 ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~D~~g~~~~~~~~~ 67 (162)
T cd04123 2 KVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGG--------------KRIDLAIWDTAGQERYHALGP 67 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECC--------------EEEEEEEEECCchHHHHHhhH
Confidence 599999999999999999998776543333333322211111110 012489999999999999999
Q ss_pred hccCccceeEEeeccccCCchhHHHHH----HHHHhcCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000728 876 RGSGLCDIAILVVDIMHGLEPQTIESL----NLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1326)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E~l----~~l~~~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~e~~~~ 951 (1326)
.++..+|++|+|+|++++...+....| ......++|+|||+||+|+... ..+.
T Consensus 68 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~------~~~~----------------- 124 (162)
T cd04123 68 IYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQ------RVVS----------------- 124 (162)
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccc------cCCC-----------------
Confidence 999999999999999876544333332 2222236899999999998621 0000
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHH
Q 000728 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1326)
Q Consensus 952 l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~ 1002 (1326)
...+...+... .++++++||++|.||.+++.+|...
T Consensus 125 ~~~~~~~~~~~---------------~~~~~~~s~~~~~gi~~~~~~l~~~ 160 (162)
T cd04123 125 KSEAEEYAKSV---------------GAKHFETSAKTGKGIEELFLSLAKR 160 (162)
T ss_pred HHHHHHHHHHc---------------CCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 00111111111 2478999999999999999998764
No 166
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.68 E-value=4.5e-16 Score=158.66 Aligned_cols=153 Identities=24% Similarity=0.230 Sum_probs=104.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchhhhhh
Q 000728 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1326)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~~lr~ 875 (1326)
.|+|+|++++|||||+++|++..+.......++.++....+.... ....++||||||+..|..++.
T Consensus 2 ~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~--------------~~~~~~l~D~~g~~~~~~~~~ 67 (159)
T cd00154 2 KIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDG--------------KTVKLQIWDTAGQERFRSITP 67 (159)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECC--------------EEEEEEEEecCChHHHHHHHH
Confidence 599999999999999999998776654333333333333322211 112489999999999999999
Q ss_pred hccCccceeEEeeccccCCchhHHHHH-HHHHhc---CCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000728 876 RGSGLCDIAILVVDIMHGLEPQTIESL-NLLKMR---NTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1326)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E~l-~~l~~~---~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~e~~~~ 951 (1326)
.++..+|++|+|+|+.+.........| ..+... ++|+||++||+|+... ... .
T Consensus 68 ~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~-----~~~------------------~ 124 (159)
T cd00154 68 SYYRGAHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQ-----RQV------------------S 124 (159)
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEccccccc-----ccc------------------c
Confidence 999999999999999874333333333 333333 4899999999998511 000 0
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHH
Q 000728 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLV 1000 (1326)
Q Consensus 952 l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~ 1000 (1326)
...+...+.. ..++++.+||.+|.||.+++.+|.
T Consensus 125 ~~~~~~~~~~---------------~~~~~~~~sa~~~~~i~~~~~~i~ 158 (159)
T cd00154 125 TEEAQQFAKE---------------NGLLFFETSAKTGENVEELFQSLA 158 (159)
T ss_pred HHHHHHHHHH---------------cCCeEEEEecCCCCCHHHHHHHHh
Confidence 0111111211 125899999999999999998875
No 167
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.68 E-value=4.2e-16 Score=168.21 Aligned_cols=158 Identities=16% Similarity=0.155 Sum_probs=107.2
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchhhh
Q 000728 794 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL 873 (1326)
Q Consensus 794 ~piV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~~l 873 (1326)
...|+|||..++||||||.+|....+.......++.++....+.... ....|.||||||+..|..+
T Consensus 6 ~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~--------------~~~~l~iwDt~G~~~~~~l 71 (189)
T cd04121 6 LLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDG--------------RRVKLQLWDTSGQGRFCTI 71 (189)
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECC--------------EEEEEEEEeCCCcHHHHHH
Confidence 35699999999999999999997665433333333333222222111 0124899999999999999
Q ss_pred hhhccCccceeEEeeccccCCchhHHHHH-HHHHh--cCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHHHHHH
Q 000728 874 RSRGSGLCDIAILVVDIMHGLEPQTIESL-NLLKM--RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 950 (1326)
Q Consensus 874 r~rg~~~aDiaILVVDa~~Gv~~QT~E~l-~~l~~--~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~e~~~ 950 (1326)
+..+++.+|++|||+|+++..+.+.+..| ..+.. .++|+|||.||+|+... +. +
T Consensus 72 ~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL~~~----~~--v----------------- 128 (189)
T cd04121 72 FRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLAFK----RQ--V----------------- 128 (189)
T ss_pred HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccchhc----cC--C-----------------
Confidence 99999999999999999885544443333 33332 46899999999998521 00 0
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHHH
Q 000728 951 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1326)
Q Consensus 951 ~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1326)
....+....... .++++.|||++|.||.++|.+|+..+
T Consensus 129 ~~~~~~~~a~~~---------------~~~~~e~SAk~g~~V~~~F~~l~~~i 166 (189)
T cd04121 129 ATEQAQAYAERN---------------GMTFFEVSPLCNFNITESFTELARIV 166 (189)
T ss_pred CHHHHHHHHHHc---------------CCEEEEecCCCCCCHHHHHHHHHHHH
Confidence 011111122211 25799999999999999999998644
No 168
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.67 E-value=5.6e-16 Score=163.29 Aligned_cols=153 Identities=19% Similarity=0.157 Sum_probs=99.2
Q ss_pred EEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchhhhhhh
Q 000728 797 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSR 876 (1326)
Q Consensus 797 V~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~~lr~r 876 (1326)
|+|+|+.++|||||+++|.+..+.. ..+++...+. .+. +....|+||||||+..|..++..
T Consensus 2 vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~~--~~~----------------~~~~~i~l~Dt~G~~~~~~~~~~ 62 (169)
T cd04158 2 VVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNVE--TVE----------------YKNLKFTIWDVGGKHKLRPLWKH 62 (169)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeEE--EEE----------------ECCEEEEEEECCCChhcchHHHH
Confidence 8999999999999999998764432 1121211111 111 11235899999999999999999
Q ss_pred ccCccceeEEeeccccCCchh-HHHHHHHHH-h---cCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000728 877 GSGLCDIAILVVDIMHGLEPQ-TIESLNLLK-M---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1326)
Q Consensus 877 g~~~aDiaILVVDa~~Gv~~Q-T~E~l~~l~-~---~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~e~~~~ 951 (1326)
++..+|++|||+|+++.-... ....|..+. . .++|+|||+||+|+... .+
T Consensus 63 ~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~------~~------------------- 117 (169)
T cd04158 63 YYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGA------LS------------------- 117 (169)
T ss_pred HhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccC------CC-------------------
Confidence 999999999999998742221 122233232 1 24899999999998520 00
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHH
Q 000728 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1326)
Q Consensus 952 l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~ 1002 (1326)
...+...+....+ ..+..+.+++|||++|.||.++|.+|...
T Consensus 118 ~~~~~~~~~~~~~---------~~~~~~~~~~~Sa~~g~gv~~~f~~l~~~ 159 (169)
T cd04158 118 VEEMTELLSLHKL---------CCGRSWYIQGCDARSGMGLYEGLDWLSRQ 159 (169)
T ss_pred HHHHHHHhCCccc---------cCCCcEEEEeCcCCCCCCHHHHHHHHHHH
Confidence 0111111110110 01234578999999999999999998753
No 169
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.67 E-value=4.1e-16 Score=171.19 Aligned_cols=158 Identities=15% Similarity=0.067 Sum_probs=105.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchhhhhh
Q 000728 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1326)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~~lr~ 875 (1326)
.|+|+|.+++|||||+++|.+..+.....+.++.++....+.+... ....|.||||||+..|..++.
T Consensus 2 Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~-------------~~~~~~i~Dt~G~~~~~~l~~ 68 (215)
T cd04109 2 KIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGN-------------LNVTLQVWDIGGQSIGGKMLD 68 (215)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCC-------------CEEEEEEEECCCcHHHHHHHH
Confidence 5899999999999999999987776544444444432222222110 012489999999999999999
Q ss_pred hccCccceeEEeeccccCCchhHHHHH-HHHHh------cCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHHHH
Q 000728 876 RGSGLCDIAILVVDIMHGLEPQTIESL-NLLKM------RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEF 948 (1326)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E~l-~~l~~------~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~e~ 948 (1326)
.+++.+|++|||+|+++.-....+..| ..+.. .++|+|||+||+|+...+ ...
T Consensus 69 ~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~----~v~---------------- 128 (215)
T cd04109 69 KYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNR----TVK---------------- 128 (215)
T ss_pred HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECccccccc----ccC----------------
Confidence 999999999999999875333333322 33322 246899999999985210 000
Q ss_pred HHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHHHH
Q 000728 949 NMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1004 (1326)
Q Consensus 949 ~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~q 1004 (1326)
..........++ +++++|||++|.||.+||.+|+..+.
T Consensus 129 ---~~~~~~~~~~~~---------------~~~~~iSAktg~gv~~lf~~l~~~l~ 166 (215)
T cd04109 129 ---DDKHARFAQANG---------------MESCLVSAKTGDRVNLLFQQLAAELL 166 (215)
T ss_pred ---HHHHHHHHHHcC---------------CEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 001111111111 47889999999999999999986543
No 170
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.67 E-value=3.3e-16 Score=189.50 Aligned_cols=149 Identities=26% Similarity=0.333 Sum_probs=111.0
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCccc-ccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcc----
Q 000728 795 PICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES---- 869 (1326)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~~~v~-~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~---- 869 (1326)
|+|+|+|++|+|||||+++|++.... .....|+|.+.....+.+. ...+.||||||+..
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~----------------~~~~~liDT~G~~~~~~~ 65 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWL----------------GREFILIDTGGIEPDDDG 65 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEEC----------------CcEEEEEECCCCCCcchh
Confidence 67999999999999999999987642 3445666665543333322 23599999999987
Q ss_pred ----hhhhhhhccCccceeEEeeccccCCchhHHHHHHHHHhcCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHH
Q 000728 870 ----FTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQ 945 (1326)
Q Consensus 870 ----F~~lr~rg~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~ 945 (1326)
+......++..+|++|||||+.+++.......+.+++..++|+|+|+||+|+... .
T Consensus 66 ~~~~~~~~~~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~D~~~~------~-------------- 125 (435)
T PRK00093 66 FEKQIREQAELAIEEADVILFVVDGRAGLTPADEEIAKILRKSNKPVILVVNKVDGPDE------E-------------- 125 (435)
T ss_pred HHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCcEEEEEECccCccc------h--------------
Confidence 2333456788999999999999999888888888888889999999999996420 0
Q ss_pred HHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHH
Q 000728 946 NEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1001 (1326)
Q Consensus 946 ~e~~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~ 1001 (1326)
.....+...|+ ..++++||.+|.||.+|++.|+.
T Consensus 126 --------~~~~~~~~lg~--------------~~~~~iSa~~g~gv~~l~~~I~~ 159 (435)
T PRK00093 126 --------ADAYEFYSLGL--------------GEPYPISAEHGRGIGDLLDAILE 159 (435)
T ss_pred --------hhHHHHHhcCC--------------CCCEEEEeeCCCCHHHHHHHHHh
Confidence 00011112222 24789999999999999998875
No 171
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.67 E-value=5.6e-16 Score=158.62 Aligned_cols=146 Identities=26% Similarity=0.345 Sum_probs=103.2
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCccc-ccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchhh-
Q 000728 795 PICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN- 872 (1326)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~~~v~-~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~~- 872 (1326)
..|+++|++|+|||||+++|.+.... .+...++|..+....+.+. ...++||||||+..+..
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~i~DtpG~~~~~~~ 65 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIG----------------GIPVRLIDTAGIRETEDE 65 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeC----------------CEEEEEEECCCcCCCcch
Confidence 35999999999999999999977642 3344556655433333222 23489999999877643
Q ss_pred -------hhhhccCccceeEEeeccccCCchhHHHHHHHHHhcCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHH
Q 000728 873 -------LRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQ 945 (1326)
Q Consensus 873 -------lr~rg~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~ 945 (1326)
.....+..+|++|+|+|+.+.........+.. ..+.|+|||+||+|+...+ .
T Consensus 66 ~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~--~~~~~vi~v~nK~D~~~~~------~------------- 124 (157)
T cd04164 66 IEKIGIERAREAIEEADLVLFVIDASRGLDEEDLEILEL--PADKPIIVVLNKSDLLPDS------E------------- 124 (157)
T ss_pred HHHHHHHHHHHHHhhCCEEEEEEECCCCCCHHHHHHHHh--hcCCCEEEEEEchhcCCcc------c-------------
Confidence 23356778999999999998665555444443 4679999999999986310 0
Q ss_pred HHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHHH
Q 000728 946 NEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1326)
Q Consensus 946 ~e~~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1326)
. +. .....++|++||.+|.||.+|+.+|..++
T Consensus 125 ------~------~~--------------~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 156 (157)
T cd04164 125 ------L------LS--------------LLAGKPIIAISAKTGEGLDELKEALLELA 156 (157)
T ss_pred ------c------cc--------------ccCCCceEEEECCCCCCHHHHHHHHHHhh
Confidence 0 00 01236899999999999999999887643
No 172
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.67 E-value=6e-16 Score=163.65 Aligned_cols=159 Identities=16% Similarity=0.153 Sum_probs=104.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchhhhhh
Q 000728 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1326)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~~lr~ 875 (1326)
.|+|||+.++|||||+++|++..+.....+.+..++....+..... ...+.||||||++.|..++.
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~--------------~~~l~i~Dt~G~~~~~~~~~ 67 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGV--------------PFSLQLWDTAGQERFKCIAS 67 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCE--------------EEEEEEEeCCChHHHHhhHH
Confidence 4899999999999999999988776544444433322122211110 12499999999999999999
Q ss_pred hccCccceeEEeeccccCCchhHHHHH-HHHHhc----CCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHHHHHH
Q 000728 876 RGSGLCDIAILVVDIMHGLEPQTIESL-NLLKMR----NTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 950 (1326)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E~l-~~l~~~----~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~e~~~ 950 (1326)
.+++.+|++|||+|+++.........| ..+... ..|+|+|+||+|+...+ .... ..
T Consensus 68 ~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~----~~~~---~~------------ 128 (170)
T cd04108 68 TYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPA----QYAL---ME------------ 128 (170)
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccc----cccc---cH------------
Confidence 999999999999999774333333333 233222 35799999999985210 0000 00
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHHHH
Q 000728 951 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1004 (1326)
Q Consensus 951 ~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~q 1004 (1326)
.......... .++++++||.+|.||.+|+..|..++.
T Consensus 129 --~~~~~~~~~~---------------~~~~~e~Sa~~g~~v~~lf~~l~~~~~ 165 (170)
T cd04108 129 --QDAIKLAAEM---------------QAEYWSVSALSGENVREFFFRVAALTF 165 (170)
T ss_pred --HHHHHHHHHc---------------CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 0001111111 147899999999999999999987653
No 173
>PLN03118 Rab family protein; Provisional
Probab=99.67 E-value=8.4e-16 Score=168.07 Aligned_cols=158 Identities=21% Similarity=0.154 Sum_probs=104.4
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchhh
Q 000728 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 872 (1326)
Q Consensus 793 R~piV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~~ 872 (1326)
..+.|+|||+.|+|||||+++|++..+... .+.++.++....+.+.. ....|.||||||+..|..
T Consensus 13 ~~~kv~ivG~~~vGKTsli~~l~~~~~~~~-~~t~~~~~~~~~~~~~~--------------~~~~l~l~Dt~G~~~~~~ 77 (211)
T PLN03118 13 LSFKILLIGDSGVGKSSLLVSFISSSVEDL-APTIGVDFKIKQLTVGG--------------KRLKLTIWDTAGQERFRT 77 (211)
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCCc-CCCceeEEEEEEEEECC--------------EEEEEEEEECCCchhhHH
Confidence 346799999999999999999997765321 12222111111111111 012489999999999999
Q ss_pred hhhhccCccceeEEeeccccCCchhHHHH-HH-HHH----hcCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHH
Q 000728 873 LRSRGSGLCDIAILVVDIMHGLEPQTIES-LN-LLK----MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQN 946 (1326)
Q Consensus 873 lr~rg~~~aDiaILVVDa~~Gv~~QT~E~-l~-~l~----~~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~ 946 (1326)
++..+++.+|++|||+|+++....+.+.. |. .+. ..++|+|||+||+|+... ..+.
T Consensus 78 ~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~------~~i~------------ 139 (211)
T PLN03118 78 LTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESE------RDVS------------ 139 (211)
T ss_pred HHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc------CccC------------
Confidence 99999999999999999988554444432 32 222 135799999999998621 0000
Q ss_pred HHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHHH
Q 000728 947 EFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1326)
Q Consensus 947 e~~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1326)
........... .+++|+|||++|.||.++|.+|...+
T Consensus 140 -----~~~~~~~~~~~---------------~~~~~e~SAk~~~~v~~l~~~l~~~~ 176 (211)
T PLN03118 140 -----REEGMALAKEH---------------GCLFLECSAKTRENVEQCFEELALKI 176 (211)
T ss_pred -----HHHHHHHHHHc---------------CCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 00011111111 25799999999999999999988665
No 174
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.67 E-value=1.1e-15 Score=160.26 Aligned_cols=157 Identities=16% Similarity=0.175 Sum_probs=100.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchhhhhh
Q 000728 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1326)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~~lr~ 875 (1326)
.|+|+|+.|+|||||+++|....+... .+.++... ..... .......++||||||+..|..++.
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~~~~~-~~~~~~~~---~~~~~------------~~~~~~~~~i~Dt~G~~~~~~~~~ 65 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEEFPEN-VPRVLPEI---TIPAD------------VTPERVPTTIVDTSSRPQDRANLA 65 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCcc-CCCcccce---Eeeee------------ecCCeEEEEEEeCCCchhhhHHHh
Confidence 589999999999999999998776432 11111111 00000 000112489999999999888888
Q ss_pred hccCccceeEEeeccccCCchhHHH-HH-HHHHh--cCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000728 876 RGSGLCDIAILVVDIMHGLEPQTIE-SL-NLLKM--RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1326)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E-~l-~~l~~--~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~e~~~~ 951 (1326)
.++..+|++|||+|+++....+... .| ..++. .++|+|||+||+|+...+.. ..+. ..
T Consensus 66 ~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~~-------~~~~-----------~~ 127 (166)
T cd01893 66 AEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQ-------AGLE-----------EE 127 (166)
T ss_pred hhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccch-------hHHH-----------HH
Confidence 8889999999999998865554432 23 33332 36899999999999632100 0000 00
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHH
Q 000728 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1326)
Q Consensus 952 l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~ 1002 (1326)
+..+...+ ....++++|||++|.|+.+|+..+...
T Consensus 128 ~~~~~~~~----------------~~~~~~~e~Sa~~~~~v~~lf~~~~~~ 162 (166)
T cd01893 128 MLPIMNEF----------------REIETCVECSAKTLINVSEVFYYAQKA 162 (166)
T ss_pred HHHHHHHH----------------hcccEEEEeccccccCHHHHHHHHHHH
Confidence 01111111 112379999999999999999987654
No 175
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.67 E-value=5.9e-16 Score=160.10 Aligned_cols=155 Identities=17% Similarity=0.104 Sum_probs=101.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchhhhhh
Q 000728 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1326)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~~lr~ 875 (1326)
.|+|+|.+|+|||||+++|+...+.....+.+...+ ....... .....+.||||||+..|..++.
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~--------------~~~~~~~i~D~~g~~~~~~~~~ 66 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLD--------------GEDVQLNILDTAGQEDYAAIRD 66 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhE-EEEEEEC--------------CEEEEEEEEECCChhhhhHHHH
Confidence 599999999999999999997765533222222111 1111110 0112489999999999999999
Q ss_pred hccCccceeEEeeccccCCchh-HHHHHHHH-H---hcCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHHHHHH
Q 000728 876 RGSGLCDIAILVVDIMHGLEPQ-TIESLNLL-K---MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 950 (1326)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~Q-T~E~l~~l-~---~~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~e~~~ 950 (1326)
.+++.+|++|+|+|+++.-... ....+..+ + ..++|+|||+||+|+... +....
T Consensus 67 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~----~~~~~----------------- 125 (164)
T cd04139 67 NYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDK----RQVSS----------------- 125 (164)
T ss_pred HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccc----cccCH-----------------
Confidence 9999999999999987632211 11222222 2 257999999999998621 00000
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHHH
Q 000728 951 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1326)
Q Consensus 951 ~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1326)
.......... .+++|++||++|.||.+|+..|...+
T Consensus 126 --~~~~~~~~~~---------------~~~~~~~Sa~~~~gi~~l~~~l~~~~ 161 (164)
T cd04139 126 --EEAANLARQW---------------GVPYVETSAKTRQNVEKAFYDLVREI 161 (164)
T ss_pred --HHHHHHHHHh---------------CCeEEEeeCCCCCCHHHHHHHHHHHH
Confidence 0111111111 14899999999999999999987654
No 176
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.66 E-value=1.1e-15 Score=179.18 Aligned_cols=163 Identities=23% Similarity=0.352 Sum_probs=122.1
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCc-ccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCC----
Q 000728 792 LRSPICCIMGHVDTGKTKLLDCIRGTN-VQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPG---- 866 (1326)
Q Consensus 792 ~R~piV~IlGhvdaGKTTLLd~L~~~~-v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPG---- 866 (1326)
..++.|||+|.|++|||||+|+|++.. +-.+...|+|.+.-...+.+ ....+.||||.|
T Consensus 176 ~~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~----------------~~~~~~liDTAGiRrk 239 (444)
T COG1160 176 TDPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFER----------------DGRKYVLIDTAGIRRK 239 (444)
T ss_pred CCceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEE----------------CCeEEEEEECCCCCcc
Confidence 345669999999999999999999865 44566778888765444443 335699999999
Q ss_pred ------Ccchhhhhh-hccCccceeEEeeccccCCchhHHHHHHHHHhcCCcEEEEEeccccccCcccCCCchHHHHHHH
Q 000728 867 ------HESFTNLRS-RGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQ 939 (1326)
Q Consensus 867 ------he~F~~lr~-rg~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~ 939 (1326)
++.|+.++. ..+..+|+|+||+|+..|+..|....+.++...+.++|||+||+|++.. +..
T Consensus 240 ~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~~g~~~vIvvNKWDl~~~-----~~~------- 307 (444)
T COG1160 240 GKITESVEKYSVARTLKAIERADVVLLVIDATEGISEQDLRIAGLIEEAGRGIVIVVNKWDLVEE-----DEA------- 307 (444)
T ss_pred cccccceEEEeehhhHhHHhhcCEEEEEEECCCCchHHHHHHHHHHHHcCCCeEEEEEccccCCc-----hhh-------
Confidence 455655544 5677899999999999999999999999999999999999999998732 000
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHHH
Q 000728 940 QNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1326)
Q Consensus 940 q~~~~~~e~~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1326)
....+. ..+...|... ++.+++++||++|.||..|+..+...+
T Consensus 308 ----~~~~~k---~~i~~~l~~l--------------~~a~i~~iSA~~~~~i~~l~~~i~~~~ 350 (444)
T COG1160 308 ----TMEEFK---KKLRRKLPFL--------------DFAPIVFISALTGQGLDKLFEAIKEIY 350 (444)
T ss_pred ----HHHHHH---HHHHHHhccc--------------cCCeEEEEEecCCCChHHHHHHHHHHH
Confidence 111111 1222222111 346999999999999999999887654
No 177
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.66 E-value=5.7e-16 Score=168.30 Aligned_cols=156 Identities=20% Similarity=0.170 Sum_probs=98.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchhh---
Q 000728 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN--- 872 (1326)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~~--- 872 (1326)
.|+|+|..++|||||+++|.+..+.....++++..+....+.+.. ....++||||||+..|..
T Consensus 2 kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~--------------~~~~l~i~Dt~G~~~~~~~~~ 67 (198)
T cd04142 2 RVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSG--------------RVYDLHILDVPNMQRYPGTAG 67 (198)
T ss_pred EEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECC--------------EEEEEEEEeCCCcccCCccch
Confidence 589999999999999999998776544333333222111111111 012488999999876521
Q ss_pred -----hhhhccCccceeEEeeccccCCchhHHHHH-HHHH------hcCCcEEEEEeccccccCcccCCCchHHHHHHHh
Q 000728 873 -----LRSRGSGLCDIAILVVDIMHGLEPQTIESL-NLLK------MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQ 940 (1326)
Q Consensus 873 -----lr~rg~~~aDiaILVVDa~~Gv~~QT~E~l-~~l~------~~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q 940 (1326)
++.+.+..||++|||+|+++....+....| ..+. ..++|+|||+||+|+... +...
T Consensus 68 ~e~~~~~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~----~~~~-------- 135 (198)
T cd04142 68 QEWMDPRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRH----RFAP-------- 135 (198)
T ss_pred hHHHHHHHhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECcccccc----cccc--------
Confidence 244567899999999999875444333332 2222 246899999999998521 0000
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHH
Q 000728 941 NTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1326)
Q Consensus 941 ~~~~~~e~~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~ 1002 (1326)
......+.... ..++|++|||++|.||.+||..|+..
T Consensus 136 ------------~~~~~~~~~~~-------------~~~~~~e~Sak~g~~v~~lf~~i~~~ 172 (198)
T cd04142 136 ------------RHVLSVLVRKS-------------WKCGYLECSAKYNWHILLLFKELLIS 172 (198)
T ss_pred ------------HHHHHHHHHHh-------------cCCcEEEecCCCCCCHHHHHHHHHHH
Confidence 00011111110 13689999999999999999888753
No 178
>PLN03110 Rab GTPase; Provisional
Probab=99.66 E-value=1e-15 Score=168.31 Aligned_cols=160 Identities=18% Similarity=0.144 Sum_probs=109.4
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchhhhh
Q 000728 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1326)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~~lr 874 (1326)
..|+|+|+.++|||||+.+|.+..+.....+++..++....+.+... ...+.||||||+..|..++
T Consensus 13 ~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~--------------~~~l~l~Dt~G~~~~~~~~ 78 (216)
T PLN03110 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGK--------------TVKAQIWDTAGQERYRAIT 78 (216)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCE--------------EEEEEEEECCCcHHHHHHH
Confidence 46999999999999999999987765433333333332222222110 1248999999999999999
Q ss_pred hhccCccceeEEeeccccCCchhHHHHH-HHHHh---cCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHHHHHH
Q 000728 875 SRGSGLCDIAILVVDIMHGLEPQTIESL-NLLKM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 950 (1326)
Q Consensus 875 ~rg~~~aDiaILVVDa~~Gv~~QT~E~l-~~l~~---~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~e~~~ 950 (1326)
..+++.++++|||+|+++....+.+..| ..+.. .++|+|||+||+|+...+ ...
T Consensus 79 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~----~~~------------------ 136 (216)
T PLN03110 79 SAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLR----SVA------------------ 136 (216)
T ss_pred HHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhccccc----CCC------------------
Confidence 9999999999999999875544444433 33332 478999999999985211 000
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHHHHHh
Q 000728 951 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKT 1006 (1326)
Q Consensus 951 ~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~q~~ 1006 (1326)
......+... ..++++++||++|.||.++|.+|+..+...
T Consensus 137 --~~~~~~l~~~--------------~~~~~~e~SA~~g~~v~~lf~~l~~~i~~~ 176 (216)
T PLN03110 137 --EEDGQALAEK--------------EGLSFLETSALEATNVEKAFQTILLEIYHI 176 (216)
T ss_pred --HHHHHHHHHH--------------cCCEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 0001111110 125899999999999999999998776553
No 179
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.66 E-value=7.1e-16 Score=163.84 Aligned_cols=165 Identities=18% Similarity=0.208 Sum_probs=103.4
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchhhhh
Q 000728 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1326)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~~lr 874 (1326)
..|+|+|..++|||||+.+++...+.....+.+..... ..+.... ....|+||||||+..|..++
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~--------------~~~~l~i~Dt~G~~~~~~~~ 66 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDG--------------KPVNLGLWDTAGQEDYDRLR 66 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeeeE-EEEEECC--------------EEEEEEEEECCCchhhhhhh
Confidence 46999999999999999999987665433232221111 1111110 11248999999999999999
Q ss_pred hhccCccceeEEeeccccCCchhHHH-HH-HHHHh--cCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHHHHH-
Q 000728 875 SRGSGLCDIAILVVDIMHGLEPQTIE-SL-NLLKM--RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN- 949 (1326)
Q Consensus 875 ~rg~~~aDiaILVVDa~~Gv~~QT~E-~l-~~l~~--~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~e~~- 949 (1326)
..++..+|++|||+|+++.-..+... .| ..+.. .++|+|||+||+|+... ...+ ..+. ....
T Consensus 67 ~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~-----~~~~-~~~~-------~~~~~ 133 (174)
T cd01871 67 PLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDD-----KDTI-EKLK-------EKKLT 133 (174)
T ss_pred hhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccC-----hhhH-HHHh-------hccCC
Confidence 99999999999999998854444432 22 32322 36899999999998521 0000 0000 0000
Q ss_pred -HHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHH
Q 000728 950 -MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1001 (1326)
Q Consensus 950 -~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~ 1001 (1326)
............. +.+++++|||++|.||.+||..|+.
T Consensus 134 ~v~~~~~~~~~~~~--------------~~~~~~e~Sa~~~~~i~~~f~~l~~ 172 (174)
T cd01871 134 PITYPQGLAMAKEI--------------GAVKYLECSALTQKGLKTVFDEAIR 172 (174)
T ss_pred CCCHHHHHHHHHHc--------------CCcEEEEecccccCCHHHHHHHHHH
Confidence 0000111111111 2358999999999999999988864
No 180
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.66 E-value=1e-15 Score=164.03 Aligned_cols=160 Identities=10% Similarity=0.085 Sum_probs=102.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchhhhhh
Q 000728 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1326)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~~lr~ 875 (1326)
.|+|+|..++|||||+.+|+...+.....+.+..++....+..... ...+.||||+|+..|..++.
T Consensus 2 Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~--------------~~~l~iwDt~G~~~~~~~~~ 67 (182)
T cd04128 2 KIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGT--------------EITFSIWDLGGQREFINMLP 67 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCE--------------EEEEEEEeCCCchhHHHhhH
Confidence 5899999999999999999987765433333322221112221110 12489999999999999999
Q ss_pred hccCccceeEEeeccccCCchhHHHHH-HHHHh---cCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000728 876 RGSGLCDIAILVVDIMHGLEPQTIESL-NLLKM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1326)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E~l-~~l~~---~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~e~~~~ 951 (1326)
.+++.+|++|||+|+++....+.+..| ..++. ..+| |+|+||+|+........ .. .
T Consensus 68 ~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~----~~---------------~ 127 (182)
T cd04128 68 LVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEE----QE---------------E 127 (182)
T ss_pred HHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchh----hh---------------h
Confidence 999999999999999875443333222 33332 2456 67899999863210000 00 0
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHHH
Q 000728 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1326)
Q Consensus 952 l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1326)
+......+... ++ +++++|||++|.||.+||.+|+..+
T Consensus 128 ~~~~~~~~a~~------------~~--~~~~e~SAk~g~~v~~lf~~l~~~l 165 (182)
T cd04128 128 ITKQARKYAKA------------MK--APLIFCSTSHSINVQKIFKIVLAKA 165 (182)
T ss_pred hHHHHHHHHHH------------cC--CEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 00001111111 11 5899999999999999999987644
No 181
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.66 E-value=4.7e-16 Score=174.60 Aligned_cols=157 Identities=18% Similarity=0.247 Sum_probs=104.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchhhhhh
Q 000728 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1326)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~~lr~ 875 (1326)
.|+|||..|+|||||+++|++..+.....+++. ++....+.+.. ....|+||||||+..|..++.
T Consensus 2 KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~--------------~~~~l~I~Dt~G~~~~~~~~~ 66 (247)
T cd04143 2 RMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRG--------------EVYQLDILDTSGNHPFPAMRR 66 (247)
T ss_pred EEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECC--------------EEEEEEEEECCCChhhhHHHH
Confidence 599999999999999999998776543333321 11111111110 013488999999999999999
Q ss_pred hccCccceeEEeeccccCCchhHHHHH-HHHH------------hcCCcEEEEEeccccccCcccCCCchHHHHHHHhhH
Q 000728 876 RGSGLCDIAILVVDIMHGLEPQTIESL-NLLK------------MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNT 942 (1326)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E~l-~~l~------------~~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~ 942 (1326)
.++..+|++|||+|+++....+.+..| ..+. ..++|+|||+||+|+... +..
T Consensus 67 ~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~----~~v----------- 131 (247)
T cd04143 67 LSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFP----REV----------- 131 (247)
T ss_pred HHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhc----ccc-----------
Confidence 899999999999999875433333222 2221 136899999999998521 000
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHHHH
Q 000728 943 DVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1004 (1326)
Q Consensus 943 ~~~~e~~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~q 1004 (1326)
....+...+... ..+.+++|||++|.||.+||.+|+.++.
T Consensus 132 --------~~~ei~~~~~~~--------------~~~~~~evSAktg~gI~elf~~L~~~~~ 171 (247)
T cd04143 132 --------QRDEVEQLVGGD--------------ENCAYFEVSAKKNSNLDEMFRALFSLAK 171 (247)
T ss_pred --------CHHHHHHHHHhc--------------CCCEEEEEeCCCCCCHHHHHHHHHHHhc
Confidence 011121122110 1358999999999999999999987653
No 182
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.66 E-value=6.1e-16 Score=167.48 Aligned_cols=157 Identities=19% Similarity=0.196 Sum_probs=101.6
Q ss_pred EEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchhhhhhh
Q 000728 797 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSR 876 (1326)
Q Consensus 797 V~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~~lr~r 876 (1326)
|+|+|+.|+|||||+++|++..+.......+ .......+.+.. ....++|||||||..|..++..
T Consensus 2 v~vvG~~~vGKTsll~~~~~~~~~~~~~~t~-~~~~~~~~~~~~--------------~~~~l~i~D~~G~~~~~~~~~~ 66 (198)
T cd04147 2 LVFMGAAGVGKTALIQRFLYDTFEPKYRRTV-EEMHRKEYEVGG--------------VSLTLDILDTSGSYSFPAMRKL 66 (198)
T ss_pred EEEECCCCCCHHHHHHHHHhCCCCccCCCch-hhheeEEEEECC--------------EEEEEEEEECCCchhhhHHHHH
Confidence 8999999999999999999876543221111 111111111110 0124889999999999999999
Q ss_pred ccCccceeEEeeccccCCchhHHHHH-HHHH----hcCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000728 877 GSGLCDIAILVVDIMHGLEPQTIESL-NLLK----MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1326)
Q Consensus 877 g~~~aDiaILVVDa~~Gv~~QT~E~l-~~l~----~~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~e~~~~ 951 (1326)
++..+|++|||+|+++....+....| ..+. ..++|+|||+||+|+... ...+.
T Consensus 67 ~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~-----~~~v~----------------- 124 (198)
T cd04147 67 SIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEE-----ERQVP----------------- 124 (198)
T ss_pred HhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccc-----ccccc-----------------
Confidence 99999999999999875433333222 1222 247999999999998631 00000
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHHHH
Q 000728 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1004 (1326)
Q Consensus 952 l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~q 1004 (1326)
...+...+ ... ..++++++||++|.||.+|+.+|+..+.
T Consensus 125 ~~~~~~~~-~~~-------------~~~~~~~~Sa~~g~gv~~l~~~l~~~~~ 163 (198)
T cd04147 125 AKDALSTV-ELD-------------WNCGFVETSAKDNENVLEVFKELLRQAN 163 (198)
T ss_pred HHHHHHHH-Hhh-------------cCCcEEEecCCCCCCHHHHHHHHHHHhh
Confidence 00000001 000 1257899999999999999999987654
No 183
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.66 E-value=7.4e-16 Score=164.93 Aligned_cols=159 Identities=20% Similarity=0.181 Sum_probs=103.1
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchhhhh
Q 000728 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1326)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~~lr 874 (1326)
..|+|+|+.++|||||+.+|....+.. ..++ +|..+.... +....++||||||+..|..++
T Consensus 18 ~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T----~~~~~~~~~--------------~~~~~~~l~D~~G~~~~~~~~ 78 (182)
T PTZ00133 18 VRILMVGLDAAGKTTILYKLKLGEVVT-TIPT----IGFNVETVE--------------YKNLKFTMWDVGGQDKLRPLW 78 (182)
T ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-cCCc----cccceEEEE--------------ECCEEEEEEECCCCHhHHHHH
Confidence 569999999999999999997554432 1111 121111110 112348999999999999999
Q ss_pred hhccCccceeEEeeccccCCch-hHHHHHHHH-Hh---cCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHHHHH
Q 000728 875 SRGSGLCDIAILVVDIMHGLEP-QTIESLNLL-KM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 949 (1326)
Q Consensus 875 ~rg~~~aDiaILVVDa~~Gv~~-QT~E~l~~l-~~---~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~e~~ 949 (1326)
..+++.+|++|||+|+++.-.. .....|..+ .. .++|+|||+||+|+...+ +.
T Consensus 79 ~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~------~~---------------- 136 (182)
T PTZ00133 79 RHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAM------ST---------------- 136 (182)
T ss_pred HHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCC------CH----------------
Confidence 9999999999999999763211 122223222 22 358999999999985210 00
Q ss_pred HHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHHHHHhH
Q 000728 950 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTM 1007 (1326)
Q Consensus 950 ~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~q~~l 1007 (1326)
..+.. ..++. +.. ...+.++++||++|.||.+++.+|...+...|
T Consensus 137 ---~~i~~---~l~~~---~~~----~~~~~~~~~Sa~tg~gv~e~~~~l~~~i~~~~ 181 (182)
T PTZ00133 137 ---TEVTE---KLGLH---SVR----QRNWYIQGCCATTAQGLYEGLDWLSANIKKSM 181 (182)
T ss_pred ---HHHHH---HhCCC---ccc----CCcEEEEeeeCCCCCCHHHHHHHHHHHHHHhc
Confidence 01111 11221 000 12467889999999999999999987665544
No 184
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.66 E-value=7.4e-16 Score=160.24 Aligned_cols=156 Identities=16% Similarity=0.206 Sum_probs=101.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHcC--cccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchhhh
Q 000728 796 ICCIMGHVDTGKTKLLDCIRGT--NVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL 873 (1326)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~~--~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~~l 873 (1326)
.|+|||.+++|||||+++|... .+.....+++..++....++... -....+.||||||+..|..+
T Consensus 2 ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~-------------~~~~~l~i~Dt~G~~~~~~~ 68 (164)
T cd04101 2 RCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDT-------------DNTVELFIFDSAGQELYSDM 68 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCC-------------CCEEEEEEEECCCHHHHHHH
Confidence 5999999999999999999864 33332223332232222222211 01124899999999999999
Q ss_pred hhhccCccceeEEeeccccCCchhHHHHH-HHHHh--cCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHHHHHH
Q 000728 874 RSRGSGLCDIAILVVDIMHGLEPQTIESL-NLLKM--RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 950 (1326)
Q Consensus 874 r~rg~~~aDiaILVVDa~~Gv~~QT~E~l-~~l~~--~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~e~~~ 950 (1326)
+...+..+|++|+|+|+++......+..| ..+.. .++|+|||+||+|+... .....
T Consensus 69 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~----~~~~~----------------- 127 (164)
T cd04101 69 VSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLADK----AEVTD----------------- 127 (164)
T ss_pred HHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccc----cCCCH-----------------
Confidence 99999999999999999874333333333 22332 36899999999998521 00000
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHH
Q 000728 951 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1326)
Q Consensus 951 ~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~ 1002 (1326)
.....+.. . ..+++++|||.+|.||.+++..|...
T Consensus 128 ---~~~~~~~~-~-------------~~~~~~~~Sa~~~~gi~~l~~~l~~~ 162 (164)
T cd04101 128 ---AQAQAFAQ-A-------------NQLKFFKTSALRGVGYEEPFESLARA 162 (164)
T ss_pred ---HHHHHHHH-H-------------cCCeEEEEeCCCCCChHHHHHHHHHH
Confidence 00001110 0 12579999999999999999988754
No 185
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.66 E-value=8.5e-16 Score=162.78 Aligned_cols=157 Identities=16% Similarity=0.149 Sum_probs=105.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchhhhhh
Q 000728 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1326)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~~lr~ 875 (1326)
.|+|+|++|+|||||+++|+...+.....+++.... ...+.+.. ....+.||||||+..|..++.
T Consensus 3 kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~--------------~~~~~~l~D~~g~~~~~~~~~ 67 (180)
T cd04137 3 KIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKG--------------QDYHLEIVDTAGQDEYSILPQ 67 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECC--------------EEEEEEEEECCChHhhHHHHH
Confidence 599999999999999999997765433333222111 11111110 012488999999999999999
Q ss_pred hccCccceeEEeeccccCCchhHHHHH-HHH-H---hcCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHHHHHH
Q 000728 876 RGSGLCDIAILVVDIMHGLEPQTIESL-NLL-K---MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 950 (1326)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E~l-~~l-~---~~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~e~~~ 950 (1326)
.++..+|++|+|+|++++...+....| ..+ . ..++|+|||+||+|+...+ ...
T Consensus 68 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~----~~~------------------ 125 (180)
T cd04137 68 KYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQR----QVS------------------ 125 (180)
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcC----ccC------------------
Confidence 999999999999999986555544333 222 2 2467999999999985210 000
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHHHHH
Q 000728 951 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQK 1005 (1326)
Q Consensus 951 ~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~q~ 1005 (1326)
...+...... ++ ++++++||++|.||.+++.+|...+..
T Consensus 126 -~~~~~~~~~~-------------~~--~~~~~~Sa~~~~gv~~l~~~l~~~~~~ 164 (180)
T cd04137 126 -TEEGKELAES-------------WG--AAFLESSARENENVEEAFELLIEEIEK 164 (180)
T ss_pred -HHHHHHHHHH-------------cC--CeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 0001111111 11 589999999999999999999876653
No 186
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.66 E-value=7.4e-16 Score=162.14 Aligned_cols=168 Identities=19% Similarity=0.162 Sum_probs=102.3
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchhhhh
Q 000728 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1326)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~~lr 874 (1326)
..|+|||+.++|||||+.+|++..+.....+.+...+.. .+.+.. ....+.||||||++.|..++
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~-~~~~~~--------------~~~~l~i~Dt~G~~~~~~~~ 66 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDG--------------KQVELALWDTAGQEDYDRLR 66 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceEE-EEEECC--------------EEEEEEEEeCCCchhhhhcc
Confidence 359999999999999999999876654332322221111 111110 01248999999999999998
Q ss_pred hhccCccceeEEeeccccCCchhHH-HHH-HHHHh--cCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHHHHHH
Q 000728 875 SRGSGLCDIAILVVDIMHGLEPQTI-ESL-NLLKM--RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 950 (1326)
Q Consensus 875 ~rg~~~aDiaILVVDa~~Gv~~QT~-E~l-~~l~~--~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~e~~~ 950 (1326)
..++..+|++|||+|+++.-..... ..| ..++. .++|+|||+||+|+...+. ....+..... ...
T Consensus 67 ~~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~------~~~~i~~~~~-----~~v 135 (175)
T cd01870 67 PLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH------TRRELAKMKQ-----EPV 135 (175)
T ss_pred ccccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccChh------hhhhhhhccC-----CCc
Confidence 8899999999999999864322222 122 22332 3789999999999863211 0000000000 000
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHH
Q 000728 951 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1326)
Q Consensus 951 ~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~ 1002 (1326)
............ +.+++++|||++|.||.+||.+|+..
T Consensus 136 ~~~~~~~~~~~~--------------~~~~~~~~Sa~~~~~v~~lf~~l~~~ 173 (175)
T cd01870 136 KPEEGRDMANKI--------------GAFGYMECSAKTKEGVREVFEMATRA 173 (175)
T ss_pred cHHHHHHHHHHc--------------CCcEEEEeccccCcCHHHHHHHHHHH
Confidence 000111111111 23589999999999999999998753
No 187
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.65 E-value=6e-16 Score=162.52 Aligned_cols=156 Identities=23% Similarity=0.241 Sum_probs=101.6
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchh
Q 000728 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 871 (1326)
Q Consensus 792 ~R~piV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~ 871 (1326)
.+.+.|+|+|+.|+|||||+++|.+..+... ..+.|...... .+....+.||||||+..|.
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~~~~-----~~t~g~~~~~i--------------~~~~~~~~~~D~~G~~~~~ 72 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLASEDISHI-----TPTQGFNIKTV--------------QSDGFKLNVWDIGGQRAIR 72 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHhcCCCccc-----CCCCCcceEEE--------------EECCEEEEEEECCCCHHHH
Confidence 4467799999999999999999987644211 11112111100 0112348999999999999
Q ss_pred hhhhhccCccceeEEeeccccCCc-hhHHHHHHHH----HhcCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHH
Q 000728 872 NLRSRGSGLCDIAILVVDIMHGLE-PQTIESLNLL----KMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQN 946 (1326)
Q Consensus 872 ~lr~rg~~~aDiaILVVDa~~Gv~-~QT~E~l~~l----~~~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~ 946 (1326)
.++..++..||++|+|+|+.+... ..+...+..+ ...++|+++++||+|+... ..
T Consensus 73 ~~~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~------~~-------------- 132 (173)
T cd04155 73 PYWRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATA------AP-------------- 132 (173)
T ss_pred HHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccC------CC--------------
Confidence 999999999999999999976322 1222222222 2346899999999998621 00
Q ss_pred HHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHH
Q 000728 947 EFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1001 (1326)
Q Consensus 947 e~~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~ 1001 (1326)
...+... .++.. + ....++++++||++|.||.+++.||+.
T Consensus 133 -----~~~i~~~---l~~~~-~------~~~~~~~~~~Sa~~~~gi~~~~~~l~~ 172 (173)
T cd04155 133 -----AEEIAEA---LNLHD-L------RDRTWHIQACSAKTGEGLQEGMNWVCK 172 (173)
T ss_pred -----HHHHHHH---cCCcc-c------CCCeEEEEEeECCCCCCHHHHHHHHhc
Confidence 0111111 12210 0 113457899999999999999999863
No 188
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.65 E-value=3.8e-16 Score=164.14 Aligned_cols=108 Identities=19% Similarity=0.165 Sum_probs=77.5
Q ss_pred EEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchhhhhhh
Q 000728 797 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSR 876 (1326)
Q Consensus 797 V~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~~lr~r 876 (1326)
|+|||+.|+|||||+.+|.+..+.... .+++|..+... .+....|.||||||+..|..++..
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~----~pt~g~~~~~i--------------~~~~~~l~i~Dt~G~~~~~~~~~~ 63 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESV----VPTTGFNSVAI--------------PTQDAIMELLEIGGSQNLRKYWKR 63 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccc----cccCCcceEEE--------------eeCCeEEEEEECCCCcchhHHHHH
Confidence 799999999999999999976554322 22222211111 112235999999999999999999
Q ss_pred ccCccceeEEeeccccCCchhH-HHHHHHHH--hcCCcEEEEEeccccc
Q 000728 877 GSGLCDIAILVVDIMHGLEPQT-IESLNLLK--MRNTEFIVALNKVDRL 922 (1326)
Q Consensus 877 g~~~aDiaILVVDa~~Gv~~QT-~E~l~~l~--~~~vP~IVvINKiD~~ 922 (1326)
+++.+|++|||||+++...... ...|..+. ..++|+|||+||+|+.
T Consensus 64 ~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~~~~piilv~NK~Dl~ 112 (164)
T cd04162 64 YLSGSQGLIFVVDSADSERLPLARQELHQLLQHPPDLPLVVLANKQDLP 112 (164)
T ss_pred HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhCCCCCcEEEEEeCcCCc
Confidence 9999999999999987543222 22233332 2579999999999986
No 189
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.65 E-value=1.2e-15 Score=159.26 Aligned_cols=165 Identities=16% Similarity=0.180 Sum_probs=102.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchhhhhh
Q 000728 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1326)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~~lr~ 875 (1326)
.|+|+|+.|+|||||+++|++..+.....+.+...... .+.... ....+.|||||||..|..++.
T Consensus 2 ki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~-~~~~~~--------------~~~~l~~~D~~g~~~~~~~~~ 66 (171)
T cd00157 2 KIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNYSA-TVTVDG--------------KQVNLGLWDTAGQEEYDRLRP 66 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEE-EEEECC--------------EEEEEEEEeCCCcccccccch
Confidence 58999999999999999999887643333333222211 111110 112489999999999988888
Q ss_pred hccCccceeEEeeccccCCchhHH--HHHHHHHh--cCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000728 876 RGSGLCDIAILVVDIMHGLEPQTI--ESLNLLKM--RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1326)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~--E~l~~l~~--~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~e~~~~ 951 (1326)
..++.+|++|+|+|+++....+.. .++..+.. .++|+|||+||+|+...+. ....+......+ .
T Consensus 67 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~------~~~~~~~~~~~v------~ 134 (171)
T cd00157 67 LSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDEN------TLKKLEKGKEPI------T 134 (171)
T ss_pred hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchh------hhhhcccCCCcc------C
Confidence 888999999999999874333322 22333333 3599999999999874210 000000000000 0
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHH
Q 000728 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1001 (1326)
Q Consensus 952 l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~ 1001 (1326)
.......+... +..+++++||++|.||.+|+..|+.
T Consensus 135 ~~~~~~~~~~~--------------~~~~~~~~Sa~~~~gi~~l~~~i~~ 170 (171)
T cd00157 135 PEEGEKLAKEI--------------GAIGYMECSALTQEGVKEVFEEAIR 170 (171)
T ss_pred HHHHHHHHHHh--------------CCeEEEEeecCCCCCHHHHHHHHhh
Confidence 01111112111 2348999999999999999998864
No 190
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.65 E-value=1e-15 Score=161.20 Aligned_cols=153 Identities=22% Similarity=0.241 Sum_probs=100.3
Q ss_pred EEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchhhhhhh
Q 000728 797 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSR 876 (1326)
Q Consensus 797 V~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~~lr~r 876 (1326)
|+|+|..++|||||+++|.+. +... ...++|...... .+....++||||||+..|..++..
T Consensus 2 i~~~G~~~~GKTsl~~~l~~~-~~~~----~~~t~g~~~~~~--------------~~~~~~~~i~D~~G~~~~~~~~~~ 62 (167)
T cd04161 2 LLTVGLDNAGKTTLVSALQGE-IPKK----VAPTVGFTPTKL--------------RLDKYEVCIFDLGGGANFRGIWVN 62 (167)
T ss_pred EEEECCCCCCHHHHHHHHhCC-CCcc----ccCcccceEEEE--------------EECCEEEEEEECCCcHHHHHHHHH
Confidence 899999999999999999865 2211 112222221110 012235899999999999999999
Q ss_pred ccCccceeEEeeccccCCchh-HHHHHHHHHh----cCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000728 877 GSGLCDIAILVVDIMHGLEPQ-TIESLNLLKM----RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1326)
Q Consensus 877 g~~~aDiaILVVDa~~Gv~~Q-T~E~l~~l~~----~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~e~~~~ 951 (1326)
++..||++|||||+++.-..+ ....+..+.. .++|+|||+||+|+.... +
T Consensus 63 ~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~------~------------------- 117 (167)
T cd04161 63 YYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNAL------L------------------- 117 (167)
T ss_pred HHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCC------C-------------------
Confidence 999999999999998743322 2333333332 378999999999986320 0
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCC------CChhhHHHHHH
Q 000728 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISG------EGIPDLLLLLV 1000 (1326)
Q Consensus 952 l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tG------eGI~eLl~~L~ 1000 (1326)
...+...+....+. ...+..+++++|||++| .||.+.|.||+
T Consensus 118 ~~~i~~~~~l~~~~-------~~~~~~~~~~~~Sa~~g~~~~~~~g~~~~~~wl~ 165 (167)
T cd04161 118 GADVIEYLSLEKLV-------NENKSLCHIEPCSAIEGLGKKIDPSIVEGLRWLL 165 (167)
T ss_pred HHHHHHhcCccccc-------CCCCceEEEEEeEceeCCCCccccCHHHHHHHHh
Confidence 11122111111110 01134578999999998 89999999986
No 191
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.65 E-value=1.2e-15 Score=163.76 Aligned_cols=161 Identities=16% Similarity=0.162 Sum_probs=103.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCcccccc-cCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchhhhh
Q 000728 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGE-AGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1326)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~~~v~~ge-~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~~lr 874 (1326)
.|+|+|++++|||||+++|++..+..+. .+.+...+....+.... ....|.||||||+..|..++
T Consensus 2 ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--------------~~~~l~i~D~~G~~~~~~~~ 67 (193)
T cd04118 2 KVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGE--------------RVVTLGIWDTAGSERYEAMS 67 (193)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECC--------------EEEEEEEEECCCchhhhhhh
Confidence 5999999999999999999987765322 12221111111111111 00137899999999999999
Q ss_pred hhccCccceeEEeeccccCCchhHHH-HHHHHHhc--CCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000728 875 SRGSGLCDIAILVVDIMHGLEPQTIE-SLNLLKMR--NTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1326)
Q Consensus 875 ~rg~~~aDiaILVVDa~~Gv~~QT~E-~l~~l~~~--~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~e~~~~ 951 (1326)
..+++.+|++|||+|+++....+... ++..++.. ++|+|||+||+|+... .... ..+ .
T Consensus 68 ~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~-----~~~~-~~v-------------~ 128 (193)
T cd04118 68 RIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLIEQ-----DRSL-RQV-------------D 128 (193)
T ss_pred HhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEccccccc-----cccc-Ccc-------------C
Confidence 88999999999999998753333222 33333333 6899999999998521 0000 000 0
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHHHH
Q 000728 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1004 (1326)
Q Consensus 952 l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~q 1004 (1326)
...+....... .++++++||++|.||.+|+.+|...+.
T Consensus 129 ~~~~~~~~~~~---------------~~~~~~~Sa~~~~gv~~l~~~i~~~~~ 166 (193)
T cd04118 129 FHDVQDFADEI---------------KAQHFETSSKTGQNVDELFQKVAEDFV 166 (193)
T ss_pred HHHHHHHHHHc---------------CCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 01111111111 257899999999999999999987654
No 192
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.65 E-value=8.9e-16 Score=195.92 Aligned_cols=152 Identities=23% Similarity=0.319 Sum_probs=112.7
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCccc-ccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcc---
Q 000728 794 SPICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES--- 869 (1326)
Q Consensus 794 ~piV~IlGhvdaGKTTLLd~L~~~~v~-~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~--- 869 (1326)
.|+|+|+|++|+|||||+++|++.... .....|+|.+.-...+.+ ....++||||||+..
T Consensus 275 ~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~----------------~~~~~~liDT~G~~~~~~ 338 (712)
T PRK09518 275 VGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEW----------------AGTDFKLVDTGGWEADVE 338 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEE----------------CCEEEEEEeCCCcCCCCc
Confidence 456999999999999999999986542 344567776643322222 224599999999763
Q ss_pred -----hhhhhhhccCccceeEEeeccccCCchhHHHHHHHHHhcCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHH
Q 000728 870 -----FTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDV 944 (1326)
Q Consensus 870 -----F~~lr~rg~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~ 944 (1326)
|...+..++..||++|||||+.+++.+....++.+|+..++|+|+|+||+|+... .
T Consensus 339 ~~~~~~~~~~~~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~~~pvIlV~NK~D~~~~-------~------------ 399 (712)
T PRK09518 339 GIDSAIASQAQIAVSLADAVVFVVDGQVGLTSTDERIVRMLRRAGKPVVLAVNKIDDQAS-------E------------ 399 (712)
T ss_pred cHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECcccccc-------h------------
Confidence 4455567789999999999999999988888888999999999999999998521 0
Q ss_pred HHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHHH
Q 000728 945 QNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1326)
Q Consensus 945 ~~e~~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1326)
.....+...|+ + .+++|||++|.||.+|+.+|+..+
T Consensus 400 ---------~~~~~~~~lg~-----------~---~~~~iSA~~g~GI~eLl~~i~~~l 435 (712)
T PRK09518 400 ---------YDAAEFWKLGL-----------G---EPYPISAMHGRGVGDLLDEALDSL 435 (712)
T ss_pred ---------hhHHHHHHcCC-----------C---CeEEEECCCCCCchHHHHHHHHhc
Confidence 00011112222 1 347899999999999999988655
No 193
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.65 E-value=1.7e-15 Score=161.78 Aligned_cols=166 Identities=14% Similarity=0.191 Sum_probs=105.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchhhhhh
Q 000728 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1326)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~~lr~ 875 (1326)
.|+|+|+.++|||||+.++....+.....+.+...+. ..+..+. ....|+||||+|++.|..++.
T Consensus 3 kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~-~~~~~~~--------------~~v~l~i~Dt~G~~~~~~~~~ 67 (176)
T cd04133 3 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVSVDG--------------NTVNLGLWDTAGQEDYNRLRP 67 (176)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeE-EEEEECC--------------EEEEEEEEECCCCccccccch
Confidence 5999999999999999999987775433333221110 0111110 113489999999999999999
Q ss_pred hccCccceeEEeeccccCCchhHH-H-HHHHHHh--cCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000728 876 RGSGLCDIAILVVDIMHGLEPQTI-E-SLNLLKM--RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1326)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~-E-~l~~l~~--~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~e~~~~ 951 (1326)
.+++.+|++|||+|.++....+.. . ++..++. .++|+|||.||+|+... +.. +..+... + ...
T Consensus 68 ~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~----~~~-----~~~~~~~-~---~v~ 134 (176)
T cd04133 68 LSYRGADVFVLAFSLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDD----KQY-----LADHPGA-S---PIT 134 (176)
T ss_pred hhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhccC----hhh-----hhhccCC-C---CCC
Confidence 999999999999999886555543 2 3344432 36899999999998521 000 0000000 0 000
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHHH
Q 000728 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1326)
Q Consensus 952 l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1326)
........... +..+++.|||++|.||.++|..|+..+
T Consensus 135 ~~~~~~~a~~~--------------~~~~~~E~SAk~~~nV~~~F~~~~~~~ 172 (176)
T cd04133 135 TAQGEELRKQI--------------GAAAYIECSSKTQQNVKAVFDAAIKVV 172 (176)
T ss_pred HHHHHHHHHHc--------------CCCEEEECCCCcccCHHHHHHHHHHHH
Confidence 00111111111 123699999999999999999987643
No 194
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.65 E-value=9e-16 Score=167.14 Aligned_cols=150 Identities=19% Similarity=0.184 Sum_probs=102.0
Q ss_pred EeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchhhhhhhccC
Q 000728 800 MGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSRGSG 879 (1326)
Q Consensus 800 lGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~~lr~rg~~ 879 (1326)
||+.++|||||+.+|+...+.....+.+..++....+.+.. ....|.||||||++.|..++..+++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~--------------~~~~l~iwDt~G~e~~~~l~~~~~~ 66 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNR--------------GPIRFNVWDTAGQEKFGGLRDGYYI 66 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECC--------------EEEEEEEEECCCchhhhhhhHHHhc
Confidence 69999999999999997665433222222222111111111 1124999999999999999999999
Q ss_pred ccceeEEeeccccCCchhHHHHH-HHHHh--cCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHHHHHHHHHHHH
Q 000728 880 LCDIAILVVDIMHGLEPQTIESL-NLLKM--RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIV 956 (1326)
Q Consensus 880 ~aDiaILVVDa~~Gv~~QT~E~l-~~l~~--~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~e~~~~l~~I~ 956 (1326)
.+|++|||+|+++..+.+.+..| ..++. .++|+|||+||+|+... ... ...+
T Consensus 67 ~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~-----~v~-------------------~~~~- 121 (200)
T smart00176 67 QGQCAIIMFDVTARVTYKNVPNWHRDLVRVCENIPIVLCGNKVDVKDR-----KVK-------------------AKSI- 121 (200)
T ss_pred CCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccc-----cCC-------------------HHHH-
Confidence 99999999999987665554444 32433 46899999999998520 000 0000
Q ss_pred HHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHHH
Q 000728 957 TQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1326)
Q Consensus 957 ~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1326)
.+... ..+++++|||++|.||.++|.+|+..+
T Consensus 122 -~~~~~--------------~~~~~~e~SAk~~~~v~~~F~~l~~~i 153 (200)
T smart00176 122 -TFHRK--------------KNLQYYDISAKSNYNFEKPFLWLARKL 153 (200)
T ss_pred -HHHHH--------------cCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 11110 125899999999999999999998654
No 195
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.65 E-value=5.5e-16 Score=162.44 Aligned_cols=143 Identities=20% Similarity=0.197 Sum_probs=93.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCc----chh
Q 000728 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHE----SFT 871 (1326)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe----~F~ 871 (1326)
.|+|+|++|+|||||+++|.+.... +...+.+.+. . ..+|||||+. .|.
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~-------~~~~~~v~~~------------------~--~~~iDtpG~~~~~~~~~ 55 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTL-------ARKTQAVEFN------------------D--KGDIDTPGEYFSHPRWY 55 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcc-------CccceEEEEC------------------C--CCcccCCccccCCHHHH
Confidence 4999999999999999998754311 1111111110 0 1269999962 333
Q ss_pred hhhhhccCccceeEEeeccccCCchhHHHHHHHHHhcCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000728 872 NLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1326)
Q Consensus 872 ~lr~rg~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~e~~~~ 951 (1326)
..+..++..+|++|||||++.+....+...+.+ ..++|+|+++||+|+.. .+.
T Consensus 56 ~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~--~~~~~ii~v~nK~Dl~~-------~~~------------------ 108 (158)
T PRK15467 56 HALITTLQDVDMLIYVHGANDPESRLPAGLLDI--GVSKRQIAVISKTDMPD-------ADV------------------ 108 (158)
T ss_pred HHHHHHHhcCCEEEEEEeCCCcccccCHHHHhc--cCCCCeEEEEEccccCc-------ccH------------------
Confidence 333445789999999999998765544333322 24689999999999852 111
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHHHHHh
Q 000728 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKT 1006 (1326)
Q Consensus 952 l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~q~~ 1006 (1326)
..+...+...++ ..|+++|||++|.||.+|+..|..++...
T Consensus 109 -~~~~~~~~~~~~-------------~~p~~~~Sa~~g~gi~~l~~~l~~~~~~~ 149 (158)
T PRK15467 109 -AATRKLLLETGF-------------EEPIFELNSHDPQSVQQLVDYLASLTKQE 149 (158)
T ss_pred -HHHHHHHHHcCC-------------CCCEEEEECCCccCHHHHHHHHHHhchhh
Confidence 112223333332 25899999999999999999988766443
No 196
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.65 E-value=1.7e-15 Score=162.18 Aligned_cols=159 Identities=21% Similarity=0.202 Sum_probs=104.8
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchhhhh
Q 000728 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1326)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~~lr 874 (1326)
+.|+|+|..++|||||+++|.+..+.......++.+.....+.... ....|.||||||+..|..++
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--------------~~~~~~i~Dt~g~~~~~~~~ 66 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIEN--------------KIIKLQIWDTNGQERFRSLN 66 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECC--------------EEEEEEEEECCCcHHHHhhH
Confidence 3599999999999999999998776542222232222211111111 01248899999999999999
Q ss_pred hhccCccceeEEeeccccCCchhHHHHH-HHHH---hcCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHHHHHH
Q 000728 875 SRGSGLCDIAILVVDIMHGLEPQTIESL-NLLK---MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 950 (1326)
Q Consensus 875 ~rg~~~aDiaILVVDa~~Gv~~QT~E~l-~~l~---~~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~e~~~ 950 (1326)
...++.+|++|||+|+++.-....+..| ..+. ..++|+|||+||+|+... ..+.
T Consensus 67 ~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~------~~v~---------------- 124 (188)
T cd04125 67 NSYYRGAHGYLLVYDVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNN------KVVD---------------- 124 (188)
T ss_pred HHHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCccc------ccCC----------------
Confidence 9999999999999999875433333222 2222 235899999999998621 0000
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHHHHH
Q 000728 951 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQK 1005 (1326)
Q Consensus 951 ~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~q~ 1005 (1326)
.... ..+... ..++++++||++|.||.++|.+|+..+..
T Consensus 125 -~~~~-~~~~~~--------------~~~~~~evSa~~~~~i~~~f~~l~~~~~~ 163 (188)
T cd04125 125 -SNIA-KSFCDS--------------LNIPFFETSAKQSINVEEAFILLVKLIIK 163 (188)
T ss_pred -HHHH-HHHHHH--------------cCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 0000 011110 12479999999999999999998876543
No 197
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.64 E-value=7.4e-16 Score=161.52 Aligned_cols=162 Identities=20% Similarity=0.235 Sum_probs=116.5
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchh
Q 000728 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 871 (1326)
Q Consensus 792 ~R~piV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~ 871 (1326)
+|...|++||..++|||||+-++....+... +..+||+.|+...... + -....+.||||.|+++|.
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~----~e~TIGaaF~tktv~~--------~--~~~ikfeIWDTAGQERy~ 68 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHEN----IEPTIGAAFLTKTVTV--------D--DNTIKFEIWDTAGQERYH 68 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCccccc----cccccccEEEEEEEEe--------C--CcEEEEEEEEcCCccccc
Confidence 5677899999999999999999998888765 3455666665432110 0 001248899999999999
Q ss_pred hhhhhccCccceeEEeeccccCCchhHHHHH-HHHHhcC---CcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHHH
Q 000728 872 NLRSRGSGLCDIAILVVDIMHGLEPQTIESL-NLLKMRN---TEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNE 947 (1326)
Q Consensus 872 ~lr~rg~~~aDiaILVVDa~~Gv~~QT~E~l-~~l~~~~---vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~e 947 (1326)
.+...|++.++++|||+|+++--..++...| ..|+... +-|.+|.||+|+... +..
T Consensus 69 slapMYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~----R~V---------------- 128 (200)
T KOG0092|consen 69 SLAPMYYRGANAAIVVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLER----REV---------------- 128 (200)
T ss_pred ccccceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhc----ccc----------------
Confidence 9999999999999999999986666655554 4554442 335569999999621 111
Q ss_pred HHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHHHHH
Q 000728 948 FNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQK 1005 (1326)
Q Consensus 948 ~~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~q~ 1005 (1326)
.+.........+| ..|+.+||+||.||.++|..|...++.
T Consensus 129 ---~~~ea~~yAe~~g---------------ll~~ETSAKTg~Nv~~if~~Ia~~lp~ 168 (200)
T KOG0092|consen 129 ---EFEEAQAYAESQG---------------LLFFETSAKTGENVNEIFQAIAEKLPC 168 (200)
T ss_pred ---cHHHHHHHHHhcC---------------CEEEEEecccccCHHHHHHHHHHhccC
Confidence 1222333333344 489999999999999999999876654
No 198
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.64 E-value=1.4e-15 Score=159.02 Aligned_cols=155 Identities=19% Similarity=0.193 Sum_probs=103.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchhhhhh
Q 000728 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1326)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~~lr~ 875 (1326)
.|+|+|+.++|||||+.+|+...+.....+++..++....+..... ...|.||||||+..|..++.
T Consensus 2 ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~--------------~~~l~i~D~~g~~~~~~~~~ 67 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGI--------------KVRIQIWDTAGQERYQTITK 67 (161)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCE--------------EEEEEEEeCCCcHhHHhhHH
Confidence 5899999999999999999987775443344433332222221110 12488999999999999999
Q ss_pred hccCccceeEEeeccccCCchhHHHHH-HHHH---hcCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000728 876 RGSGLCDIAILVVDIMHGLEPQTIESL-NLLK---MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1326)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E~l-~~l~---~~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~e~~~~ 951 (1326)
.+++.+|++|+|+|+++.-..+.+..| ..+. ..++|+|+|.||+|+... +...
T Consensus 68 ~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~----~~v~------------------- 124 (161)
T cd04117 68 QYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQK----RQVG------------------- 124 (161)
T ss_pred HHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccc----cCCC-------------------
Confidence 999999999999999874333333222 2222 236899999999998521 0000
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHH
Q 000728 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1326)
Q Consensus 952 l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~ 1002 (1326)
......+... ++ +++++|||++|.||.++|.+|+.+
T Consensus 125 -~~~~~~~~~~------------~~--~~~~e~Sa~~~~~v~~~f~~l~~~ 160 (161)
T cd04117 125 -DEQGNKLAKE------------YG--MDFFETSACTNSNIKESFTRLTEL 160 (161)
T ss_pred -HHHHHHHHHH------------cC--CEEEEEeCCCCCCHHHHHHHHHhh
Confidence 0001111111 11 579999999999999999998753
No 199
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.64 E-value=3.1e-15 Score=159.48 Aligned_cols=161 Identities=22% Similarity=0.299 Sum_probs=119.7
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCc--ccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCC--
Q 000728 792 LRSPICCIMGHVDTGKTKLLDCIRGTN--VQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH-- 867 (1326)
Q Consensus 792 ~R~piV~IlGhvdaGKTTLLd~L~~~~--v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGh-- 867 (1326)
...|-|||+|..|+|||||||+|++.. +-.+.++|.||.+..+.+.. .+.|+|.||+
T Consensus 22 ~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~-------------------~~~lVDlPGYGy 82 (200)
T COG0218 22 DDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDD-------------------ELRLVDLPGYGY 82 (200)
T ss_pred CCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecC-------------------cEEEEeCCCccc
Confidence 356779999999999999999999866 56788999999997665432 3889999994
Q ss_pred --------cchhhhhhhccC---ccceeEEeeccccCCchhHHHHHHHHHhcCCcEEEEEeccccccCcccCCCchHHHH
Q 000728 868 --------ESFTNLRSRGSG---LCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKA 936 (1326)
Q Consensus 868 --------e~F~~lr~rg~~---~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~vP~IVvINKiD~~~~w~~~~~a~~~~~ 936 (1326)
+.+..+...|+. ...++|+|||+.|++....++.+..+...++|++|++||+|.+.. .
T Consensus 83 Akv~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~~i~~~vv~tK~DKi~~------~----- 151 (200)
T COG0218 83 AKVPKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLELGIPVIVVLTKADKLKK------S----- 151 (200)
T ss_pred ccCCHHHHHHHHHHHHHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEccccCCh------h-----
Confidence 334445444443 267799999999999999999999999999999999999999831 1
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHHHH
Q 000728 937 IKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1004 (1326)
Q Consensus 937 L~~q~~~~~~e~~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~q 1004 (1326)
+....+..+...| ++. +.....++.+|+.++.||++|...|..++.
T Consensus 152 ----------~~~k~l~~v~~~l---~~~---------~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~ 197 (200)
T COG0218 152 ----------ERNKQLNKVAEEL---KKP---------PPDDQWVVLFSSLKKKGIDELKAKILEWLK 197 (200)
T ss_pred ----------HHHHHHHHHHHHh---cCC---------CCccceEEEEecccccCHHHHHHHHHHHhh
Confidence 1111122232222 111 111222888999999999999999887764
No 200
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.64 E-value=1.3e-15 Score=159.11 Aligned_cols=154 Identities=19% Similarity=0.163 Sum_probs=96.5
Q ss_pred EEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcc-hhhhhh
Q 000728 797 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES-FTNLRS 875 (1326)
Q Consensus 797 V~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~-F~~lr~ 875 (1326)
|+|+|++|+|||||+.+|+...+.....+.+ ..+....+... .....+.||||||+.. |..++.
T Consensus 2 i~vvG~~~~GKtsli~~~~~~~~~~~~~~t~-~~~~~~~~~~~--------------~~~~~~~i~D~~g~~~~~~~~~~ 66 (165)
T cd04146 2 IAVLGASGVGKSALVVRFLTKRFIGEYDPNL-ESLYSRQVTID--------------GEQVSLEILDTAGQQQADTEQLE 66 (165)
T ss_pred EEEECCCCCcHHHHHHHHHhCccccccCCCh-HHhceEEEEEC--------------CEEEEEEEEECCCCcccccchHH
Confidence 8999999999999999998655432211111 11111111111 0112488999999996 455677
Q ss_pred hccCccceeEEeeccccCCchhHHHHH-HHHH-----hcCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHHHHH
Q 000728 876 RGSGLCDIAILVVDIMHGLEPQTIESL-NLLK-----MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 949 (1326)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E~l-~~l~-----~~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~e~~ 949 (1326)
++++.+|++|||+|+++....+....| ..+. ..++|+|||+||+|+... ..+.
T Consensus 67 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~------~~v~--------------- 125 (165)
T cd04146 67 RSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHY------RQVS--------------- 125 (165)
T ss_pred HHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHh------CccC---------------
Confidence 788999999999999886444433332 2222 237999999999998521 0000
Q ss_pred HHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCC-ChhhHHHHHHHHH
Q 000728 950 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGE-GIPDLLLLLVQWT 1003 (1326)
Q Consensus 950 ~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGe-GI~eLl~~L~~~~ 1003 (1326)
........... + ++++++||++|. ||.++|..|+..+
T Consensus 126 --~~~~~~~~~~~-------------~--~~~~e~Sa~~~~~~v~~~f~~l~~~~ 163 (165)
T cd04146 126 --TEEGEKLASEL-------------G--CLFFEVSAAEDYDGVHSVFHELCREV 163 (165)
T ss_pred --HHHHHHHHHHc-------------C--CEEEEeCCCCCchhHHHHHHHHHHHH
Confidence 00011111111 1 589999999995 9999999988654
No 201
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.64 E-value=1.6e-15 Score=193.70 Aligned_cols=160 Identities=17% Similarity=0.203 Sum_probs=114.2
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCccc-ccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCc----
Q 000728 794 SPICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHE---- 868 (1326)
Q Consensus 794 ~piV~IlGhvdaGKTTLLd~L~~~~v~-~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe---- 868 (1326)
.+.|+|+|++|+|||||+++|++..+. .....|+|.+.....+.+ ....++||||||+.
T Consensus 450 ~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~----------------~~~~~~liDTaG~~~~~~ 513 (712)
T PRK09518 450 LRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEI----------------DGEDWLFIDTAGIKRRQH 513 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEE----------------CCCEEEEEECCCcccCcc
Confidence 467999999999999999999987642 344566666543333322 22358899999953
Q ss_pred ------chhhhhh-hccCccceeEEeeccccCCchhHHHHHHHHHhcCCcEEEEEeccccccCcccCCCchHHHHHHHhh
Q 000728 869 ------SFTNLRS-RGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQN 941 (1326)
Q Consensus 869 ------~F~~lr~-rg~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~ 941 (1326)
.|..++. .++..||++|||||++++++.++...+..+...++|+|||+||+|+... ....
T Consensus 514 ~~~~~e~~~~~r~~~~i~~advvilViDat~~~s~~~~~i~~~~~~~~~piIiV~NK~DL~~~-------~~~~------ 580 (712)
T PRK09518 514 KLTGAEYYSSLRTQAAIERSELALFLFDASQPISEQDLKVMSMAVDAGRALVLVFNKWDLMDE-------FRRQ------ 580 (712)
T ss_pred cchhHHHHHHHHHHHHhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEEchhcCCh-------hHHH------
Confidence 2344433 4578899999999999999999999888888889999999999998621 0000
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHHHH
Q 000728 942 TDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1004 (1326)
Q Consensus 942 ~~~~~e~~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~q 1004 (1326)
.+...+... +. .-..+++++|||++|.||.+|+..+...+.
T Consensus 581 ------------~~~~~~~~~-l~---------~~~~~~ii~iSAktg~gv~~L~~~i~~~~~ 621 (712)
T PRK09518 581 ------------RLERLWKTE-FD---------RVTWARRVNLSAKTGWHTNRLAPAMQEALE 621 (712)
T ss_pred ------------HHHHHHHHh-cc---------CCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 011111110 00 013468899999999999999999887664
No 202
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.64 E-value=1.1e-15 Score=179.60 Aligned_cols=148 Identities=24% Similarity=0.291 Sum_probs=98.4
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCC-------
Q 000728 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH------- 867 (1326)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGh------- 867 (1326)
|.|+|+|++|+|||||+++|++..+......+.|.+.....+.+. ....++||||||+
T Consensus 190 ~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~---------------~~~~i~l~DT~G~~~~l~~~ 254 (351)
T TIGR03156 190 PTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLP---------------DGGEVLLTDTVGFIRDLPHE 254 (351)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeC---------------CCceEEEEecCcccccCCHH
Confidence 779999999999999999999876543344444544322222111 1235999999997
Q ss_pred --cchhhhhhhccCccceeEEeeccccCCchhHHH----HHHHHHhcCCcEEEEEeccccccCcccCCCchHHHHHHHhh
Q 000728 868 --ESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIE----SLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQN 941 (1326)
Q Consensus 868 --e~F~~lr~rg~~~aDiaILVVDa~~Gv~~QT~E----~l~~l~~~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~ 941 (1326)
+.|...+ ..+..+|++|+|||+++........ .+..+...++|+|+|+||+|+... .
T Consensus 255 lie~f~~tl-e~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~------~---------- 317 (351)
T TIGR03156 255 LVAAFRATL-EEVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDE------P---------- 317 (351)
T ss_pred HHHHHHHHH-HHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCCh------H----------
Confidence 2343333 2577899999999999875543332 233333347899999999998620 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHH
Q 000728 942 TDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1326)
Q Consensus 942 ~~~~~e~~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~ 1002 (1326)
.+. .+.. ...++|+|||++|.||.+|+.+|..+
T Consensus 318 ------------~v~-~~~~---------------~~~~~i~iSAktg~GI~eL~~~I~~~ 350 (351)
T TIGR03156 318 ------------RIE-RLEE---------------GYPEAVFVSAKTGEGLDLLLEAIAER 350 (351)
T ss_pred ------------hHH-HHHh---------------CCCCEEEEEccCCCCHHHHHHHHHhh
Confidence 000 0100 11368999999999999999988653
No 203
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.64 E-value=1.8e-15 Score=165.89 Aligned_cols=161 Identities=19% Similarity=0.175 Sum_probs=104.9
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchhhhh
Q 000728 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1326)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~~lr 874 (1326)
..|+|||..++|||||+++|++.++.....++++.++....+.+.. . ....|+||||||+..|..++
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~----------~---~~~~l~i~Dt~G~~~~~~~~ 69 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEP----------G---VRIKLQLWDTAGQERFRSIT 69 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECC----------C---CEEEEEEEeCCcchhHHHHH
Confidence 4699999999999999999998776543333332222211111100 0 01248999999999999999
Q ss_pred hhccCccceeEEeeccccCCchhHHHHH-HHHH----hcCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHHHHH
Q 000728 875 SRGSGLCDIAILVVDIMHGLEPQTIESL-NLLK----MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 949 (1326)
Q Consensus 875 ~rg~~~aDiaILVVDa~~Gv~~QT~E~l-~~l~----~~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~e~~ 949 (1326)
..+++.+|++|||+|+++.-....+..| ..+. ...+|+|||+||+|+.... ...
T Consensus 70 ~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~----~v~----------------- 128 (211)
T cd04111 70 RSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQR----QVT----------------- 128 (211)
T ss_pred HHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEcccccccc----ccC-----------------
Confidence 9999999999999999874332222222 2221 2357889999999986210 000
Q ss_pred HHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHHHHHh
Q 000728 950 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKT 1006 (1326)
Q Consensus 950 ~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~q~~ 1006 (1326)
.... ..+... ++ ++++++||++|.||.++|.+|+..+...
T Consensus 129 --~~~~-~~~~~~------------~~--~~~~e~Sak~g~~v~e~f~~l~~~~~~~ 168 (211)
T cd04111 129 --REEA-EKLAKD------------LG--MKYIETSARTGDNVEEAFELLTQEIYER 168 (211)
T ss_pred --HHHH-HHHHHH------------hC--CEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 0001 111111 11 6899999999999999999998766544
No 204
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.64 E-value=2.2e-15 Score=152.46 Aligned_cols=154 Identities=24% Similarity=0.307 Sum_probs=106.8
Q ss_pred EEeCCCCCHHHHHHHHHcCccc-ccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchhh-----
Q 000728 799 IMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN----- 872 (1326)
Q Consensus 799 IlGhvdaGKTTLLd~L~~~~v~-~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~~----- 872 (1326)
|+|++|+|||||+++|.+..+. .+...+.|.......+.... ...++||||||+..+..
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~Dt~g~~~~~~~~~~~ 65 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGP---------------LGPVVLIDTPGIDEAGGLGRER 65 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecC---------------CCcEEEEECCCCCccccchhhH
Confidence 6899999999999999987655 34444445444333322211 24699999999887753
Q ss_pred --hhhhccCccceeEEeeccccCCchhHHHHHHHHHhcCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHHHHHH
Q 000728 873 --LRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 950 (1326)
Q Consensus 873 --lr~rg~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~e~~~ 950 (1326)
+....++.+|++|||+|+.......+..++..+...+.|+|||+||+|+... ....
T Consensus 66 ~~~~~~~~~~~d~il~v~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~------~~~~---------------- 123 (163)
T cd00880 66 EELARRVLERADLILFVVDADLRADEEEEKLLELLRERGKPVLLVLNKIDLLPE------EEEE---------------- 123 (163)
T ss_pred HHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCeEEEEEEccccCCh------hhHH----------------
Confidence 3345778999999999999988777766566777789999999999998731 0000
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHH
Q 000728 951 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1326)
Q Consensus 951 ~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~ 1002 (1326)
.......... .....++++++||.+|.|+.+|+.+|..+
T Consensus 124 ---~~~~~~~~~~----------~~~~~~~~~~~sa~~~~~v~~l~~~l~~~ 162 (163)
T cd00880 124 ---ELLELRLLIL----------LLLLGLPVIAVSALTGEGIDELREALIEA 162 (163)
T ss_pred ---HHHHHHHhhc----------ccccCCceEEEeeeccCCHHHHHHHHHhh
Confidence 0000000000 11245799999999999999999988754
No 205
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.64 E-value=9.9e-16 Score=156.03 Aligned_cols=135 Identities=20% Similarity=0.207 Sum_probs=89.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCc-----ch
Q 000728 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHE-----SF 870 (1326)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe-----~F 870 (1326)
.|+|+|++|+|||||+++|++..+.. .+ | ++.. + ...+|||||+. .|
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~~--~~--t--~~~~-------------------~---~~~~iDt~G~~~~~~~~~ 53 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEILY--KK--T--QAVE-------------------Y---NDGAIDTPGEYVENRRLY 53 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCcccc--cc--c--eeEE-------------------E---cCeeecCchhhhhhHHHH
Confidence 48999999999999999998765321 00 1 1100 1 12689999972 34
Q ss_pred hhhhhhccCccceeEEeeccccCCchhHHHHHHHHHhcCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHHHHHH
Q 000728 871 TNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 950 (1326)
Q Consensus 871 ~~lr~rg~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~e~~~ 950 (1326)
..++ ..++.+|++|||+|++++...++..++.. ...|+|+|+||+|+... ...
T Consensus 54 ~~~~-~~~~~ad~vilv~d~~~~~s~~~~~~~~~---~~~p~ilv~NK~Dl~~~-----~~~------------------ 106 (142)
T TIGR02528 54 SALI-VTAADADVIALVQSATDPESRFPPGFASI---FVKPVIGLVTKIDLAEA-----DVD------------------ 106 (142)
T ss_pred HHHH-HHhhcCCEEEEEecCCCCCcCCChhHHHh---ccCCeEEEEEeeccCCc-----ccC------------------
Confidence 4443 35889999999999998877665433332 24599999999998521 000
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHH
Q 000728 951 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLV 1000 (1326)
Q Consensus 951 ~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~ 1000 (1326)
...+...+...+ ..++|++||++|.||.+|+.+|.
T Consensus 107 -~~~~~~~~~~~~--------------~~~~~~~Sa~~~~gi~~l~~~l~ 141 (142)
T TIGR02528 107 -IERAKELLETAG--------------AEPIFEISSVDEQGLEALVDYLN 141 (142)
T ss_pred -HHHHHHHHHHcC--------------CCcEEEEecCCCCCHHHHHHHHh
Confidence 011111122222 23789999999999999998874
No 206
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.63 E-value=2.3e-15 Score=158.04 Aligned_cols=156 Identities=17% Similarity=0.122 Sum_probs=100.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchhhhhh
Q 000728 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1326)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~~lr~ 875 (1326)
.|+|+|.+|+|||||+++|.+..+.....+.+. ......+.+.. ....+.|||||||..|..++.
T Consensus 3 ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~--------------~~~~~~i~Dt~G~~~~~~~~~ 67 (168)
T cd04177 3 KIVVLGAGGVGKSALTVQFVQNVFIESYDPTIE-DSYRKQVEIDG--------------RQCDLEILDTAGTEQFTAMRE 67 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCcccCCcch-heEEEEEEECC--------------EEEEEEEEeCCCcccchhhhH
Confidence 589999999999999999986654322111111 11001111110 112488999999999999999
Q ss_pred hccCccceeEEeeccccCCchhHHHHHHH-----HHhcCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHHHHHH
Q 000728 876 RGSGLCDIAILVVDIMHGLEPQTIESLNL-----LKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 950 (1326)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E~l~~-----l~~~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~e~~~ 950 (1326)
.++..++++|||+|+++....+....|.. ....++|+|+++||+|+... ..+.
T Consensus 68 ~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~------~~~~---------------- 125 (168)
T cd04177 68 LYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDD------RQVS---------------- 125 (168)
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhcccc------CccC----------------
Confidence 99999999999999987433333322211 12347999999999998521 0000
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHHH
Q 000728 951 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1326)
Q Consensus 951 ~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1326)
.......... + +.++++++||++|.||.++|.+|+..+
T Consensus 126 -~~~~~~~~~~-------------~-~~~~~~~~SA~~~~~i~~~f~~i~~~~ 163 (168)
T cd04177 126 -REDGVSLSQQ-------------W-GNVPFYETSARKRTNVDEVFIDLVRQI 163 (168)
T ss_pred -HHHHHHHHHH-------------c-CCceEEEeeCCCCCCHHHHHHHHHHHH
Confidence 0001111111 1 236899999999999999999987543
No 207
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.63 E-value=2e-15 Score=160.77 Aligned_cols=158 Identities=24% Similarity=0.242 Sum_probs=109.0
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchh
Q 000728 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 871 (1326)
Q Consensus 792 ~R~piV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~ 871 (1326)
.+...|+|+|..|+||||||.+|....+.. +..++|...... .+....++|||.+|+..|.
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~~~~~-----~~pT~g~~~~~i--------------~~~~~~~~~~d~gG~~~~~ 72 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNGEISE-----TIPTIGFNIEEI--------------KYKGYSLTIWDLGGQESFR 72 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSSSEEE-----EEEESSEEEEEE--------------EETTEEEEEEEESSSGGGG
T ss_pred CcEEEEEEECCCccchHHHHHHhhhccccc-----cCccccccccee--------------eeCcEEEEEEecccccccc
Confidence 345569999999999999999998654432 222233222111 1222359999999999999
Q ss_pred hhhhhccCccceeEEeeccccCC-chhHHHHHHHHHh----cCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHH
Q 000728 872 NLRSRGSGLCDIAILVVDIMHGL-EPQTIESLNLLKM----RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQN 946 (1326)
Q Consensus 872 ~lr~rg~~~aDiaILVVDa~~Gv-~~QT~E~l~~l~~----~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~ 946 (1326)
.+|..++..+|++|||||+++.- .....+.|..+.. .++|++|++||+|+... .+
T Consensus 73 ~~w~~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~------~~-------------- 132 (175)
T PF00025_consen 73 PLWKSYFQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDA------MS-------------- 132 (175)
T ss_dssp GGGGGGHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTS------ST--------------
T ss_pred ccceeeccccceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCc------ch--------------
Confidence 99999999999999999998642 3445555544332 36899999999998632 00
Q ss_pred HHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHH
Q 000728 947 EFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1326)
Q Consensus 947 e~~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~ 1002 (1326)
...+...|....+. ....+.+++|||.+|+||.+.++||...
T Consensus 133 -----~~~i~~~l~l~~l~---------~~~~~~v~~~sa~~g~Gv~e~l~WL~~~ 174 (175)
T PF00025_consen 133 -----EEEIKEYLGLEKLK---------NKRPWSVFSCSAKTGEGVDEGLEWLIEQ 174 (175)
T ss_dssp -----HHHHHHHTTGGGTT---------SSSCEEEEEEBTTTTBTHHHHHHHHHHH
T ss_pred -----hhHHHhhhhhhhcc---------cCCceEEEeeeccCCcCHHHHHHHHHhc
Confidence 11222222211111 1356899999999999999999999764
No 208
>PLN03108 Rab family protein; Provisional
Probab=99.63 E-value=3e-15 Score=163.91 Aligned_cols=157 Identities=21% Similarity=0.157 Sum_probs=104.4
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchhhhh
Q 000728 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1326)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~~lr 874 (1326)
..|+|||+.++|||||+++|+...+.......++.+++...+.+... ...|.||||||+..|..++
T Consensus 7 ~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~--------------~i~l~l~Dt~G~~~~~~~~ 72 (210)
T PLN03108 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNK--------------PIKLQIWDTAGQESFRSIT 72 (210)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCE--------------EEEEEEEeCCCcHHHHHHH
Confidence 56999999999999999999987665433333322222111111110 0138899999999999999
Q ss_pred hhccCccceeEEeeccccCCchhHHHHH-HHHH---hcCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHHHHHH
Q 000728 875 SRGSGLCDIAILVVDIMHGLEPQTIESL-NLLK---MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 950 (1326)
Q Consensus 875 ~rg~~~aDiaILVVDa~~Gv~~QT~E~l-~~l~---~~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~e~~~ 950 (1326)
..+++.+|++|||+|+++....+.+..| ..+. ..++|+|+++||+|+... +...
T Consensus 73 ~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~----~~~~------------------ 130 (210)
T PLN03108 73 RSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR----RAVS------------------ 130 (210)
T ss_pred HHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccc----cCCC------------------
Confidence 9999999999999999875443333222 2222 236899999999998521 0000
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHHH
Q 000728 951 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1326)
Q Consensus 951 ~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1326)
.......+... .++++++||++|.||.++|.+++..+
T Consensus 131 -~~~~~~~~~~~---------------~~~~~e~Sa~~~~~v~e~f~~l~~~~ 167 (210)
T PLN03108 131 -TEEGEQFAKEH---------------GLIFMEASAKTAQNVEEAFIKTAAKI 167 (210)
T ss_pred -HHHHHHHHHHc---------------CCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 01111112111 15899999999999999998887654
No 209
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.63 E-value=4.9e-15 Score=159.01 Aligned_cols=167 Identities=17% Similarity=0.199 Sum_probs=104.9
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchhhhh
Q 000728 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1326)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~~lr 874 (1326)
..|+|+|+.++|||||+.+|+...+.....+.+...+. ..+.... ....|.||||+|.+.|..++
T Consensus 6 ~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~-~~~~~~~--------------~~~~l~iwDtaG~e~~~~~~ 70 (182)
T cd04172 6 CKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEIDT--------------QRIELSLWDTSGSPYYDNVR 70 (182)
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeE-EEEEECC--------------EEEEEEEEECCCchhhHhhh
Confidence 46999999999999999999987765433333221111 1111110 11249999999999999999
Q ss_pred hhccCccceeEEeeccccCCchhHH-HHH-HHHHh--cCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHHHHHH
Q 000728 875 SRGSGLCDIAILVVDIMHGLEPQTI-ESL-NLLKM--RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 950 (1326)
Q Consensus 875 ~rg~~~aDiaILVVDa~~Gv~~QT~-E~l-~~l~~--~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~e~~~ 950 (1326)
..+++.+|++|||+|+++....+.+ ..| ..++. .++|+|||+||+|+... ......+..+... ..
T Consensus 71 ~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~------~~~~~~~~~~~~~-----~v 139 (182)
T cd04172 71 PLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTD------LTTLVELSNHRQT-----PV 139 (182)
T ss_pred hhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhcC------hhhHHHHHhcCCC-----CC
Confidence 9999999999999999886554443 233 23332 36899999999998521 1110001000000 00
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCC-hhhHHHHHHH
Q 000728 951 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEG-IPDLLLLLVQ 1001 (1326)
Q Consensus 951 ~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeG-I~eLl~~L~~ 1001 (1326)
............| .++++.|||++|.| |.++|..++.
T Consensus 140 ~~~~~~~~a~~~~--------------~~~~~E~SAk~~~n~v~~~F~~~~~ 177 (182)
T cd04172 140 SYDQGANMAKQIG--------------AATYIECSALQSENSVRDIFHVATL 177 (182)
T ss_pred CHHHHHHHHHHcC--------------CCEEEECCcCCCCCCHHHHHHHHHH
Confidence 0011111121221 24899999999998 9999988775
No 210
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.62 E-value=5.1e-15 Score=158.17 Aligned_cols=166 Identities=17% Similarity=0.182 Sum_probs=103.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchhhhhh
Q 000728 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1326)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~~lr~ 875 (1326)
.|+|+|..++|||||+.+|....+.....+.+..... ..+.... ....|.||||||++.|..++.
T Consensus 3 Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~--------------~~~~l~iwDt~G~~~~~~~~~ 67 (178)
T cd04131 3 KIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYT-ASFEIDE--------------QRIELSLWDTSGSPYYDNVRP 67 (178)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEE-EEEEECC--------------EEEEEEEEECCCchhhhhcch
Confidence 5999999999999999999987765433333322111 1111110 112489999999999999999
Q ss_pred hccCccceeEEeeccccCCchhHH-HHH-HHHHh--cCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000728 876 RGSGLCDIAILVVDIMHGLEPQTI-ESL-NLLKM--RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1326)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~-E~l-~~l~~--~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~e~~~~ 951 (1326)
.+++.+|++|||+|+++....+.. ..| ..++. .++|+|||+||+|+... ......+..+... ...
T Consensus 68 ~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~~------~~~~~~~~~~~~~-----~v~ 136 (178)
T cd04131 68 LCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTD------LSTLMELSHQRQA-----PVS 136 (178)
T ss_pred hhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhcC------hhHHHHHHhcCCC-----CCC
Confidence 999999999999999876554442 223 33333 36899999999998521 0000001000000 000
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCC-hhhHHHHHHH
Q 000728 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEG-IPDLLLLLVQ 1001 (1326)
Q Consensus 952 l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeG-I~eLl~~L~~ 1001 (1326)
........... +..+++.|||++|+| |.++|..++.
T Consensus 137 ~~e~~~~a~~~--------------~~~~~~E~SA~~~~~~v~~~F~~~~~ 173 (178)
T cd04131 137 YEQGCAIAKQL--------------GAEIYLECSAFTSEKSVRDIFHVATM 173 (178)
T ss_pred HHHHHHHHHHh--------------CCCEEEECccCcCCcCHHHHHHHHHH
Confidence 01111111111 124799999999995 9999988876
No 211
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.62 E-value=1.9e-15 Score=155.42 Aligned_cols=153 Identities=20% Similarity=0.134 Sum_probs=100.5
Q ss_pred EEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchhhhhhh
Q 000728 797 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSR 876 (1326)
Q Consensus 797 V~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~~lr~r 876 (1326)
|+|+|++|+|||||+++|++..+.....+.+ .+.....+.+.. ....+.|||||||..|..++..
T Consensus 2 i~i~G~~~~GKTsli~~l~~~~~~~~~~~~~-~~~~~~~~~~~~--------------~~~~~~l~D~~g~~~~~~~~~~ 66 (160)
T cd00876 2 VVVLGAGGVGKSAITIQFVKGTFVEEYDPTI-EDSYRKTIVVDG--------------ETYTLDILDTAGQEEFSAMRDL 66 (160)
T ss_pred EEEECCCCCCHHHHHHHHHhCCCCcCcCCCh-hHeEEEEEEECC--------------EEEEEEEEECCChHHHHHHHHH
Confidence 8999999999999999999766443322221 111111111110 0124889999999999999999
Q ss_pred ccCccceeEEeeccccCCchh-HHHHHHHHHh----cCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000728 877 GSGLCDIAILVVDIMHGLEPQ-TIESLNLLKM----RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1326)
Q Consensus 877 g~~~aDiaILVVDa~~Gv~~Q-T~E~l~~l~~----~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~e~~~~ 951 (1326)
.+..+|++|+|+|+++..... ....+..+.. .++|++||+||+|+...+ ...
T Consensus 67 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~----~~~------------------- 123 (160)
T cd00876 67 YIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENER----QVS------------------- 123 (160)
T ss_pred HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccc----eec-------------------
Confidence 999999999999987743221 2222222222 369999999999986311 000
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHH
Q 000728 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1326)
Q Consensus 952 l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~ 1002 (1326)
...+...+...+ ++++++||.+|.||.+|+.+|+..
T Consensus 124 ~~~~~~~~~~~~---------------~~~~~~S~~~~~~i~~l~~~l~~~ 159 (160)
T cd00876 124 KEEGKALAKEWG---------------CPFIETSAKDNINIDEVFKLLVRE 159 (160)
T ss_pred HHHHHHHHHHcC---------------CcEEEeccCCCCCHHHHHHHHHhh
Confidence 111222222111 589999999999999999998753
No 212
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.62 E-value=3.5e-15 Score=157.58 Aligned_cols=165 Identities=13% Similarity=0.154 Sum_probs=101.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchhhhhh
Q 000728 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1326)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~~lr~ 875 (1326)
.|+|+|+.|+|||||+.++.+..+.....+.+ .+.....+.... ....+.||||||+..|..++.
T Consensus 2 k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~-~~~~~~~~~~~~--------------~~~~~~i~Dt~G~~~~~~~~~ 66 (173)
T cd04130 2 KCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTA-FDNFSVVVLVDG--------------KPVRLQLCDTAGQDEFDKLRP 66 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCce-eeeeeEEEEECC--------------EEEEEEEEECCCChhhccccc
Confidence 58999999999999999998766543222211 111111111110 012488999999999999999
Q ss_pred hccCccceeEEeeccccCCchhHH--HHHHHHHh--cCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000728 876 RGSGLCDIAILVVDIMHGLEPQTI--ESLNLLKM--RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1326)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~--E~l~~l~~--~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~e~~~~ 951 (1326)
.+++.+|++|||+|+++....+.. .++..+.. .++|+|||+||+|+... ......+..... ....
T Consensus 67 ~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~------~~~~~~~~~~~~-----~~v~ 135 (173)
T cd04130 67 LCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTD------VNVLIQLARYGE-----KPVS 135 (173)
T ss_pred cccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccC------hhHHHHHhhcCC-----CCcC
Confidence 999999999999999875444333 23334433 36899999999998521 111000000000 0000
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHH
Q 000728 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLV 1000 (1326)
Q Consensus 952 l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~ 1000 (1326)
...+....... +..++++|||++|.||.+|+..++
T Consensus 136 ~~~~~~~a~~~--------------~~~~~~e~Sa~~~~~v~~lf~~~~ 170 (173)
T cd04130 136 QSRAKALAEKI--------------GACEYIECSALTQKNLKEVFDTAI 170 (173)
T ss_pred HHHHHHHHHHh--------------CCCeEEEEeCCCCCCHHHHHHHHH
Confidence 01111111111 224899999999999999998775
No 213
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.62 E-value=5e-15 Score=154.76 Aligned_cols=158 Identities=23% Similarity=0.299 Sum_probs=118.0
Q ss_pred cCCCCCEEEEEeCCCCCHHHHHHHHHcCccc-------ccccCc-----eeeeeeeeEeccccchhhhhhhccccccCCC
Q 000728 790 ENLRSPICCIMGHVDTGKTKLLDCIRGTNVQ-------EGEAGG-----ITQQIGATYFPAENIRERTRELKANATLKVP 857 (1326)
Q Consensus 790 ~~~R~piV~IlGhvdaGKTTLLd~L~~~~v~-------~ge~gG-----ITq~iga~~~~~~~~~~~~~~v~~~~~~~~~ 857 (1326)
..++...|+|+|..++||||++.+|...... .....+ +.+++|...+.. ..
T Consensus 6 ~k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~-----------------~~ 68 (187)
T COG2229 6 NKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDE-----------------DT 68 (187)
T ss_pred ccccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcC-----------------cc
Confidence 4578888999999999999999999865421 111122 223333333222 24
Q ss_pred CEEEEeCCCCcchhhhhhhccCccceeEEeeccccCCchhHHHHHHHHHhcC-CcEEEEEeccccccCcccCCCchHHHH
Q 000728 858 GLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRN-TEFIVALNKVDRLYGWKTCRNAPIVKA 936 (1326)
Q Consensus 858 ~I~IIDTPGhe~F~~lr~rg~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~-vP~IVvINKiD~~~~w~~~~~a~~~~~ 936 (1326)
+++|+|||||.+|..||.-+++.++++|++||++.+......+.+.++...+ +|++|++||.|+...|..
T Consensus 69 ~v~LfgtPGq~RF~fm~~~l~~ga~gaivlVDss~~~~~~a~~ii~f~~~~~~ip~vVa~NK~DL~~a~pp--------- 139 (187)
T COG2229 69 GVHLFGTPGQERFKFMWEILSRGAVGAIVLVDSSRPITFHAEEIIDFLTSRNPIPVVVAINKQDLFDALPP--------- 139 (187)
T ss_pred eEEEecCCCcHHHHHHHHHHhCCcceEEEEEecCCCcchHHHHHHHHHhhccCCCEEEEeeccccCCCCCH---------
Confidence 6999999999999999999999999999999999987776678888888888 999999999999866532
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHH
Q 000728 937 IKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1326)
Q Consensus 937 L~~q~~~~~~e~~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~ 1002 (1326)
..|...|.... -.+++|+++|..++|+.+.|..|...
T Consensus 140 ----------------e~i~e~l~~~~-------------~~~~vi~~~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 140 ----------------EKIREALKLEL-------------LSVPVIEIDATEGEGARDQLDVLLLK 176 (187)
T ss_pred ----------------HHHHHHHHhcc-------------CCCceeeeecccchhHHHHHHHHHhh
Confidence 12222222111 13699999999999999988877543
No 214
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.62 E-value=6.7e-15 Score=171.85 Aligned_cols=153 Identities=19% Similarity=0.224 Sum_probs=100.7
Q ss_pred EEEEeCCCCCHHHHHHHHHcCcccccccCceeee--eeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcc-----
Q 000728 797 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQ--IGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES----- 869 (1326)
Q Consensus 797 V~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~--iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~----- 869 (1326)
|+|||.+++||||||++|+.........+++|.. +|...+. ....|+||||||...
T Consensus 161 VglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~-----------------~~~~~~i~D~PGli~ga~~~ 223 (335)
T PRK12299 161 VGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVD-----------------DYKSFVIADIPGLIEGASEG 223 (335)
T ss_pred EEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeC-----------------CCcEEEEEeCCCccCCCCcc
Confidence 9999999999999999999766444444444443 4433221 113499999999632
Q ss_pred --hhhhhhhccCccceeEEeeccccCCchhHHHHH-HHHHh-----cCCcEEEEEeccccccCcccCCCchHHHHHHHhh
Q 000728 870 --FTNLRSRGSGLCDIAILVVDIMHGLEPQTIESL-NLLKM-----RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQN 941 (1326)
Q Consensus 870 --F~~lr~rg~~~aDiaILVVDa~~Gv~~QT~E~l-~~l~~-----~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~ 941 (1326)
+...+.+.+..|+++|+|||+++.-..+....| ..|.. .++|+|||+||||++..+ ... .
T Consensus 224 ~gLg~~flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~------~~~---~--- 291 (335)
T PRK12299 224 AGLGHRFLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEE------EER---E--- 291 (335)
T ss_pred ccHHHHHHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCch------hHH---H---
Confidence 344455677789999999999864333444433 33332 368999999999986310 000 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHHHH
Q 000728 942 TDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1004 (1326)
Q Consensus 942 ~~~~~e~~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~q 1004 (1326)
..+...+... .+++|+|||++|+||.+|+.+|..++.
T Consensus 292 -----------~~~~~~~~~~---------------~~~i~~iSAktg~GI~eL~~~L~~~l~ 328 (335)
T PRK12299 292 -----------KRAALELAAL---------------GGPVFLISAVTGEGLDELLRALWELLE 328 (335)
T ss_pred -----------HHHHHHHHhc---------------CCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 0000011111 157999999999999999999987664
No 215
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.61 E-value=2e-15 Score=159.51 Aligned_cols=159 Identities=16% Similarity=0.149 Sum_probs=102.5
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCccc-ccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchhh
Q 000728 794 SPICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 872 (1326)
Q Consensus 794 ~piV~IlGhvdaGKTTLLd~L~~~~v~-~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~~ 872 (1326)
...|+|+|..|+|||||+.+|++..+. ....+.+...+....+.+... ...++||||+|...|..
T Consensus 4 ~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~--------------~~~l~~~d~~g~~~~~~ 69 (169)
T cd01892 4 VFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQ--------------EKYLILREVGEDEVAIL 69 (169)
T ss_pred EEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCe--------------EEEEEEEecCCcccccc
Confidence 346999999999999999999987765 433333322222111111110 02388999999999999
Q ss_pred hhhhccCccceeEEeeccccCCchhHH-HHHHHHH-hcCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHHHHHH
Q 000728 873 LRSRGSGLCDIAILVVDIMHGLEPQTI-ESLNLLK-MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 950 (1326)
Q Consensus 873 lr~rg~~~aDiaILVVDa~~Gv~~QT~-E~l~~l~-~~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~e~~~ 950 (1326)
++..++..||++|||+|+++....+.. .++..+. ..++|+|||+||+|+..... . . . .
T Consensus 70 ~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~----~-~----~-----------~ 129 (169)
T cd01892 70 LNDAELAACDVACLVYDSSDPKSFSYCAEVYKKYFMLGEIPCLFVAAKADLDEQQQ----R-Y----E-----------V 129 (169)
T ss_pred cchhhhhcCCEEEEEEeCCCHHHHHHHHHHHHHhccCCCCeEEEEEEccccccccc----c-c----c-----------c
Confidence 999999999999999999774322222 2233332 23699999999999852100 0 0 0 0
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHHH
Q 000728 951 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1326)
Q Consensus 951 ~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1326)
....+ ...+++ ..++++||.+|.||.+|+..|+..+
T Consensus 130 ~~~~~---~~~~~~--------------~~~~~~Sa~~~~~v~~lf~~l~~~~ 165 (169)
T cd01892 130 QPDEF---CRKLGL--------------PPPLHFSSKLGDSSNELFTKLATAA 165 (169)
T ss_pred CHHHH---HHHcCC--------------CCCEEEEeccCccHHHHHHHHHHHh
Confidence 00011 111121 1458999999999999999987654
No 216
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.61 E-value=4.7e-15 Score=156.13 Aligned_cols=164 Identities=19% Similarity=0.126 Sum_probs=116.7
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchh
Q 000728 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 871 (1326)
Q Consensus 792 ~R~piV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~ 871 (1326)
-+...|.|+|..|+|||.|+.++....+......+|..++..-.+..+... -.|+||||.|+++|.
T Consensus 7 dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~--------------iKlQIWDTAGQERFr 72 (205)
T KOG0084|consen 7 DYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKT--------------IKLQIWDTAGQERFR 72 (205)
T ss_pred ceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceE--------------EEEEeeeccccHHHh
Confidence 355679999999999999999999988887666666555544444433211 149999999999999
Q ss_pred hhhhhccCccceeEEeeccccCCchhHHHHH----HHHHhcCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHHH
Q 000728 872 NLRSRGSGLCDIAILVVDIMHGLEPQTIESL----NLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNE 947 (1326)
Q Consensus 872 ~lr~rg~~~aDiaILVVDa~~Gv~~QT~E~l----~~l~~~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~e 947 (1326)
.++..+++.|+++|||+|+++.-+...+..| ......++|.++|.||+|+...|.-.
T Consensus 73 tit~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~------------------- 133 (205)
T KOG0084|consen 73 TITSSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVS------------------- 133 (205)
T ss_pred hhhHhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecC-------------------
Confidence 9999999999999999999885444443333 23333478999999999986322100
Q ss_pred HHHHHHHHHHHHHHcCCchhhhhcccCCCccee-EEeCCCcCCCChhhHHHHHHHHHHHhH
Q 000728 948 FNMRLVQIVTQLKEQGMNTELYYKNKDRGETFN-IVPTSAISGEGIPDLLLLLVQWTQKTM 1007 (1326)
Q Consensus 948 ~~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~-iVpvSA~tGeGI~eLl~~L~~~~q~~l 1007 (1326)
..........++ ++ ++++||+.+.||.+.|..|...+...+
T Consensus 134 ----~~~a~~fa~~~~---------------~~~f~ETSAK~~~NVe~~F~~la~~lk~~~ 175 (205)
T KOG0084|consen 134 ----TEEAQEFADELG---------------IPIFLETSAKDSTNVEDAFLTLAKELKQRK 175 (205)
T ss_pred ----HHHHHHHHHhcC---------------CcceeecccCCccCHHHHHHHHHHHHHHhc
Confidence 001111111121 34 999999999999999988876654443
No 217
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.61 E-value=8.4e-15 Score=162.93 Aligned_cols=171 Identities=17% Similarity=0.140 Sum_probs=106.8
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchhh
Q 000728 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 872 (1326)
Q Consensus 793 R~piV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~~ 872 (1326)
....|+|||..++|||||+.+|....+.....+.+...+. ..+.... ....|.||||||++.|..
T Consensus 12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~-~~i~~~~--------------~~v~l~iwDTaG~e~~~~ 76 (232)
T cd04174 12 MRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-AGLETEE--------------QRVELSLWDTSGSPYYDN 76 (232)
T ss_pred eeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeE-EEEEECC--------------EEEEEEEEeCCCchhhHH
Confidence 4456999999999999999999987765443333322211 0111110 112499999999999999
Q ss_pred hhhhccCccceeEEeeccccCCchhH-HH-HHHHHHh--cCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHHHH
Q 000728 873 LRSRGSGLCDIAILVVDIMHGLEPQT-IE-SLNLLKM--RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEF 948 (1326)
Q Consensus 873 lr~rg~~~aDiaILVVDa~~Gv~~QT-~E-~l~~l~~--~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~e~ 948 (1326)
++..+++.+|++|||+|+++....+. .. ++..+.. .++|+|||+||+|+... ......+......
T Consensus 77 ~~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~------~~~~~~l~~~~~~----- 145 (232)
T cd04174 77 VRPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRTD------LSTLMELSNQKQA----- 145 (232)
T ss_pred HHHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccc------cchhhhhccccCC-----
Confidence 99999999999999999987554443 22 2233332 36899999999998521 0000000000000
Q ss_pred HHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCC-ChhhHHHHHHHHH
Q 000728 949 NMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGE-GIPDLLLLLVQWT 1003 (1326)
Q Consensus 949 ~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGe-GI~eLl~~L~~~~ 1003 (1326)
..............| ..+|+.|||++|. ||.++|..|+..+
T Consensus 146 ~Vs~~e~~~~a~~~~--------------~~~~~EtSAktg~~~V~e~F~~~~~~~ 187 (232)
T cd04174 146 PISYEQGCALAKQLG--------------AEVYLECSAFTSEKSIHSIFRSASLLC 187 (232)
T ss_pred cCCHHHHHHHHHHcC--------------CCEEEEccCCcCCcCHHHHHHHHHHHH
Confidence 000111112222222 1268999999998 8999999887654
No 218
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=99.61 E-value=7.4e-16 Score=177.51 Aligned_cols=132 Identities=26% Similarity=0.337 Sum_probs=104.6
Q ss_pred ccCCCCCEEEEEeCCCCCHHHHHHHHHcCc------------c----cccccCceeeeeeeeEeccccchhhhhhhcccc
Q 000728 789 EENLRSPICCIMGHVDTGKTKLLDCIRGTN------------V----QEGEAGGITQQIGATYFPAENIRERTRELKANA 852 (1326)
Q Consensus 789 ~~~~R~piV~IlGhvdaGKTTLLd~L~~~~------------v----~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~ 852 (1326)
..++|| +.++.|+|||||||.++|.... + .....+|||+...+..+-++........++...
T Consensus 16 ~~NiRN--mSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~ 93 (842)
T KOG0469|consen 16 KKNIRN--MSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEG 93 (842)
T ss_pred cccccc--ceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCC
Confidence 357898 8999999999999999996311 1 122347888887777665554333222333333
Q ss_pred ccCCCCEEEEeCCCCcchhhhhhhccCccceeEEeeccccCCchhHHHHHHHHHhcCCcEEEEEeccccc
Q 000728 853 TLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRL 922 (1326)
Q Consensus 853 ~~~~~~I~IIDTPGhe~F~~lr~rg~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~vP~IVvINKiD~~ 922 (1326)
..+..-|++||.|||.+|++.+...++.+|++++|||+..|+..||...|+++....+.-++++||+|+.
T Consensus 94 d~~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~ERIkPvlv~NK~DRA 163 (842)
T KOG0469|consen 94 DGNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLVMNKMDRA 163 (842)
T ss_pred CCcceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHhhccceEEeehhhHH
Confidence 3345569999999999999999999999999999999999999999999999999888889999999985
No 219
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.60 E-value=4.2e-15 Score=155.79 Aligned_cols=151 Identities=21% Similarity=0.182 Sum_probs=93.7
Q ss_pred EEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcch-------h
Q 000728 799 IMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF-------T 871 (1326)
Q Consensus 799 IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F-------~ 871 (1326)
|+|++|+|||||+++|.+..+..+...+.|.+.....+.+.. ...++||||||+... .
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~---------------~~~~~i~DtpG~~~~~~~~~~~~ 65 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPD---------------GARIQVADIPGLIEGASEGRGLG 65 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCC---------------CCeEEEEeccccchhhhcCCCcc
Confidence 689999999999999998765334444555443222221110 245999999997432 1
Q ss_pred hhhhhccCccceeEEeeccccCC------chhHHHH-HHHHH----------hcCCcEEEEEeccccccCcccCCCchHH
Q 000728 872 NLRSRGSGLCDIAILVVDIMHGL------EPQTIES-LNLLK----------MRNTEFIVALNKVDRLYGWKTCRNAPIV 934 (1326)
Q Consensus 872 ~lr~rg~~~aDiaILVVDa~~Gv------~~QT~E~-l~~l~----------~~~vP~IVvINKiD~~~~w~~~~~a~~~ 934 (1326)
.....++..+|++|+|+|+.+.. ....... +..+. ..++|+|||+||+|+... ...
T Consensus 66 ~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~------~~~- 138 (176)
T cd01881 66 NQFLAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDA------EEL- 138 (176)
T ss_pred HHHHHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCch------hHH-
Confidence 12234567899999999998763 2222221 12221 147899999999998631 000
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHH
Q 000728 935 KAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1326)
Q Consensus 935 ~~L~~q~~~~~~e~~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~ 1002 (1326)
......... .....+++++||++|.||.+|+.+|+.+
T Consensus 139 ------------------~~~~~~~~~-------------~~~~~~~~~~Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 139 ------------------EEELVRELA-------------LEEGAEVVPISAKTEEGLDELIRAIYEL 175 (176)
T ss_pred ------------------HHHHHHHHh-------------cCCCCCEEEEehhhhcCHHHHHHHHHhh
Confidence 000000000 0123579999999999999999988653
No 220
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.60 E-value=3.6e-15 Score=180.89 Aligned_cols=146 Identities=23% Similarity=0.284 Sum_probs=106.2
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCccc-ccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchhh
Q 000728 794 SPICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 872 (1326)
Q Consensus 794 ~piV~IlGhvdaGKTTLLd~L~~~~v~-~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~~ 872 (1326)
.+.|+|+|++|+|||||+++|++..+. .....|+|.++....+.+. +..++||||||+..+..
T Consensus 215 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~----------------g~~i~l~DT~G~~~~~~ 278 (449)
T PRK05291 215 GLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLD----------------GIPLRLIDTAGIRETDD 278 (449)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEEC----------------CeEEEEEeCCCCCCCcc
Confidence 456999999999999999999987642 3445666666543333222 23589999999877643
Q ss_pred h--------hhhccCccceeEEeeccccCCchhHHHHHHHHHhcCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHH
Q 000728 873 L--------RSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDV 944 (1326)
Q Consensus 873 l--------r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~ 944 (1326)
+ ...++..+|++|||||++++...+....|.. ..++|+|+|+||+|+...+ .
T Consensus 279 ~ie~~gi~~~~~~~~~aD~il~VvD~s~~~s~~~~~~l~~--~~~~piiiV~NK~DL~~~~------~------------ 338 (449)
T PRK05291 279 EVEKIGIERSREAIEEADLVLLVLDASEPLTEEDDEILEE--LKDKPVIVVLNKADLTGEI------D------------ 338 (449)
T ss_pred HHHHHHHHHHHHHHHhCCEEEEEecCCCCCChhHHHHHHh--cCCCCcEEEEEhhhccccc------h------------
Confidence 2 2236788999999999998877666555554 4578999999999986210 0
Q ss_pred HHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHHH
Q 000728 945 QNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1326)
Q Consensus 945 ~~e~~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1326)
+. . ....++|+|||++|.||.+|+.+|...+
T Consensus 339 ----------~~-----~-------------~~~~~~i~iSAktg~GI~~L~~~L~~~l 369 (449)
T PRK05291 339 ----------LE-----E-------------ENGKPVIRISAKTGEGIDELREAIKELA 369 (449)
T ss_pred ----------hh-----h-------------ccCCceEEEEeeCCCCHHHHHHHHHHHH
Confidence 00 0 0124789999999999999999987654
No 221
>PRK11058 GTPase HflX; Provisional
Probab=99.60 E-value=1.3e-14 Score=174.36 Aligned_cols=152 Identities=22% Similarity=0.237 Sum_probs=100.3
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcc-----
Q 000728 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES----- 869 (1326)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~----- 869 (1326)
|.|+|+|.+|+|||||+++|++..+......+.|.+.....+.+. ....++||||||+..
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~---------------~~~~~~l~DTaG~~r~lp~~ 262 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVA---------------DVGETVLADTVGFIRHLPHD 262 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeC---------------CCCeEEEEecCcccccCCHH
Confidence 789999999999999999999876654444444444322222111 112589999999743
Q ss_pred ----hhhhhhhccCccceeEEeeccccCCchhHH----HHHHHHHhcCCcEEEEEeccccccCcccCCCchHHHHHHHhh
Q 000728 870 ----FTNLRSRGSGLCDIAILVVDIMHGLEPQTI----ESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQN 941 (1326)
Q Consensus 870 ----F~~lr~rg~~~aDiaILVVDa~~Gv~~QT~----E~l~~l~~~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~ 941 (1326)
|... ...+..+|++|+|+|+++....... ..+..+...++|+|+|+||||+...+ .
T Consensus 263 lve~f~~t-l~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~------~--------- 326 (426)
T PRK11058 263 LVAAFKAT-LQETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDF------E--------- 326 (426)
T ss_pred HHHHHHHH-HHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCch------h---------
Confidence 3322 2356789999999999986543333 33444444579999999999986210 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHHHH
Q 000728 942 TDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1004 (1326)
Q Consensus 942 ~~~~~e~~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~q 1004 (1326)
..+. ....++ ..+|+|||++|.||.+|+.+|...+.
T Consensus 327 --------~~~~-----~~~~~~--------------~~~v~ISAktG~GIdeL~e~I~~~l~ 362 (426)
T PRK11058 327 --------PRID-----RDEENK--------------PIRVWLSAQTGAGIPLLFQALTERLS 362 (426)
T ss_pred --------HHHH-----HHhcCC--------------CceEEEeCCCCCCHHHHHHHHHHHhh
Confidence 0000 001111 12588999999999999999987764
No 222
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.60 E-value=9e-15 Score=153.28 Aligned_cols=166 Identities=19% Similarity=0.163 Sum_probs=118.8
Q ss_pred ccCCCCCEEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCc
Q 000728 789 EENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHE 868 (1326)
Q Consensus 789 ~~~~R~piV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe 868 (1326)
...+|...|+|||..++|||||+.++++..++......|..++-...+.+... ...|.+|||.|++
T Consensus 17 ~~~~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~--------------~vrLQlWDTAGQE 82 (221)
T KOG0094|consen 17 GAPLKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDR--------------TVRLQLWDTAGQE 82 (221)
T ss_pred CccceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCc--------------EEEEEEEecccHH
Confidence 34567788999999999999999999999888766665655544433332221 1359999999999
Q ss_pred chhhhhhhccCccceeEEeeccccCCc-hhHHHHHHHHHhc----CCcEEEEEeccccccCcccCCCchHHHHHHHhhHH
Q 000728 869 SFTNLRSRGSGLCDIAILVVDIMHGLE-PQTIESLNLLKMR----NTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTD 943 (1326)
Q Consensus 869 ~F~~lr~rg~~~aDiaILVVDa~~Gv~-~QT~E~l~~l~~~----~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~ 943 (1326)
+|..+...|++.+.++|+|+|.++.-. .+|..+|.-++.. ++-+++|.||.||... ..+
T Consensus 83 RFrslipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dk------rqv---------- 146 (221)
T KOG0094|consen 83 RFRSLIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDK------RQV---------- 146 (221)
T ss_pred HHhhhhhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccch------hhh----------
Confidence 999999999999999999999987433 4555666655543 2557789999999731 000
Q ss_pred HHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHHHHHh
Q 000728 944 VQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKT 1006 (1326)
Q Consensus 944 ~~~e~~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~q~~ 1006 (1326)
.+.+ -.....++ .+.|+.+||++|.||..||..|...++..
T Consensus 147 s~eE-------g~~kAkel---------------~a~f~etsak~g~NVk~lFrrIaa~l~~~ 187 (221)
T KOG0094|consen 147 SIEE-------GERKAKEL---------------NAEFIETSAKAGENVKQLFRRIAAALPGM 187 (221)
T ss_pred hHHH-------HHHHHHHh---------------CcEEEEecccCCCCHHHHHHHHHHhccCc
Confidence 0000 00111121 14789999999999999999887766543
No 223
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.60 E-value=5.1e-15 Score=188.68 Aligned_cols=154 Identities=24% Similarity=0.295 Sum_probs=109.7
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchhh
Q 000728 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 872 (1326)
Q Consensus 793 R~piV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~~ 872 (1326)
+.++|+++||+|+|||||+|+|++.+...+...|+|.+.-...+.+. ...++||||||+.+|..
T Consensus 2 ~~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~~----------------~~~i~lvDtPG~ysl~~ 65 (772)
T PRK09554 2 KKLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFSTT----------------DHQVTLVDLPGTYSLTT 65 (772)
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEcC----------------ceEEEEEECCCcccccc
Confidence 45679999999999999999999887777778888876543333322 23599999999998854
Q ss_pred hh----------hhc--cCccceeEEeeccccCCchhHHHHHHHHHhcCCcEEEEEeccccccCcccCCCchHHHHHHHh
Q 000728 873 LR----------SRG--SGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQ 940 (1326)
Q Consensus 873 lr----------~rg--~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q 940 (1326)
.. ..+ ...+|++|+|||+++... ....+.++...++|+|+|+||+|+... ..+.
T Consensus 66 ~~~~~s~~E~i~~~~l~~~~aD~vI~VvDat~ler--~l~l~~ql~e~giPvIvVlNK~Dl~~~------~~i~------ 131 (772)
T PRK09554 66 ISSQTSLDEQIACHYILSGDADLLINVVDASNLER--NLYLTLQLLELGIPCIVALNMLDIAEK------QNIR------ 131 (772)
T ss_pred ccccccHHHHHHHHHHhccCCCEEEEEecCCcchh--hHHHHHHHHHcCCCEEEEEEchhhhhc------cCcH------
Confidence 21 112 246899999999988533 334556777889999999999998521 1110
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHHH
Q 000728 941 NTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1326)
Q Consensus 941 ~~~~~~e~~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1326)
..+. .|.+. + .+|+|++||.+|.||++|+..+....
T Consensus 132 ---------id~~----~L~~~------------L--G~pVvpiSA~~g~GIdeL~~~I~~~~ 167 (772)
T PRK09554 132 ---------IDID----ALSAR------------L--GCPVIPLVSTRGRGIEALKLAIDRHQ 167 (772)
T ss_pred ---------HHHH----HHHHH------------h--CCCEEEEEeecCCCHHHHHHHHHHhh
Confidence 0111 11110 1 15899999999999999999887654
No 224
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.59 E-value=9e-16 Score=168.66 Aligned_cols=224 Identities=22% Similarity=0.297 Sum_probs=155.8
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCc---ccccccCceeeeeeeeEeccccc------h---hhhhhhc------cc----
Q 000728 794 SPICCIMGHVDTGKTKLLDCIRGTN---VQEGEAGGITQQIGATYFPAENI------R---ERTRELK------AN---- 851 (1326)
Q Consensus 794 ~piV~IlGhvdaGKTTLLd~L~~~~---v~~ge~gGITq~iga~~~~~~~~------~---~~~~~v~------~~---- 851 (1326)
+++|+.+||+-|||||++.+|.+-+ |...-.+.||..+|...-..... + .++.... +.
T Consensus 38 TiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~~g~ 117 (466)
T KOG0466|consen 38 TINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDRPGC 117 (466)
T ss_pred eeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCcccCCC
Confidence 4568999999999999999997643 23333467888887532211100 0 0000000 00
Q ss_pred -cccC-CCCEEEEeCCCCcchhhhhhhccCccceeEEeeccccC-CchhHHHHHHHHHhcCC-cEEEEEeccccccCccc
Q 000728 852 -ATLK-VPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHG-LEPQTIESLNLLKMRNT-EFIVALNKVDRLYGWKT 927 (1326)
Q Consensus 852 -~~~~-~~~I~IIDTPGhe~F~~lr~rg~~~aDiaILVVDa~~G-v~~QT~E~l~~l~~~~v-P~IVvINKiD~~~~w~~ 927 (1326)
..++ .+++.|+|+|||.-+...+..|....|+++|+|.++.. .+|||-+||.....+.+ .+||+-||+|++..
T Consensus 118 ~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~LkhiiilQNKiDli~e--- 194 (466)
T KOG0466|consen 118 EGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMKLKHIIILQNKIDLIKE--- 194 (466)
T ss_pred CCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhhhceEEEEechhhhhhH---
Confidence 0111 23689999999999999999999999999999999875 68999999987766664 68888999999721
Q ss_pred CCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHHHHHhH
Q 000728 928 CRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTM 1007 (1326)
Q Consensus 928 ~~~a~~~~~L~~q~~~~~~e~~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~q~~l 1007 (1326)
+ ..+ .....|..++. |-+ ....|+||+||--+.||+-+.++|+..++.+.
T Consensus 195 ----~--~A~------------eq~e~I~kFi~--~t~----------ae~aPiiPisAQlkyNId~v~eyivkkIPvPv 244 (466)
T KOG0466|consen 195 ----S--QAL------------EQHEQIQKFIQ--GTV----------AEGAPIIPISAQLKYNIDVVCEYIVKKIPVPV 244 (466)
T ss_pred ----H--HHH------------HHHHHHHHHHh--ccc----------cCCCceeeehhhhccChHHHHHHHHhcCCCCc
Confidence 0 001 11223332332 111 13469999999999999999999998877554
Q ss_pred hhhhhcccccceeEEEEEEEeC--------ceeEEEEEEEeeEecCCCEEEEcc
Q 000728 1008 VEKLTFRNELQCTVLEVKVIEG--------HGTTIDVVLVNGVLHEGDQIVVCG 1053 (1326)
Q Consensus 1008 ~e~l~~~~~~~~~VlEvk~~~G--------~Gtvi~giV~~G~Lr~GD~IVl~g 1053 (1326)
. ++..+.++.|+.+|.+.- .|-++.|.+..|+|++||.|-+-+
T Consensus 245 R---df~s~prlIVIRSFDVNkPG~ev~~lkGgvaggsil~Gvlkvg~~IEiRP 295 (466)
T KOG0466|consen 245 R---DFTSPPRLIVIRSFDVNKPGSEVDDLKGGVAGGSILKGVLKVGQEIEIRP 295 (466)
T ss_pred c---ccCCCCcEEEEEeeccCCCCchhhcccCccccchhhhhhhhcCcEEEecC
Confidence 4 356677888988887643 466778889999999999997643
No 225
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.59 E-value=3.4e-15 Score=155.00 Aligned_cols=160 Identities=21% Similarity=0.223 Sum_probs=114.4
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchhhhh
Q 000728 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1326)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~~lr 874 (1326)
..|.|+|..|+|||||++++....+...... .||+.++..+... .-....+.||||.|+++|..+.
T Consensus 10 LKViiLGDsGVGKtSLmn~yv~~kF~~qyka----TIgadFltKev~V----------d~~~vtlQiWDTAGQERFqsLg 75 (210)
T KOG0394|consen 10 LKVIILGDSGVGKTSLMNQYVNKKFSQQYKA----TIGADFLTKEVQV----------DDRSVTLQIWDTAGQERFQSLG 75 (210)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHHHHhcc----ccchhheeeEEEE----------cCeEEEEEEEecccHHHhhhcc
Confidence 4699999999999999999998776543322 3444444332110 0112348999999999999999
Q ss_pred hhccCccceeEEeeccccCCchhHHHHHH--HHHhc------CCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHH
Q 000728 875 SRGSGLCDIAILVVDIMHGLEPQTIESLN--LLKMR------NTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQN 946 (1326)
Q Consensus 875 ~rg~~~aDiaILVVDa~~Gv~~QT~E~l~--~l~~~------~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~ 946 (1326)
...++.+|.++||+|.++.-...+++.|+ +|... .-||||+.||+|+..+- .+.
T Consensus 76 ~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~--~r~---------------- 137 (210)
T KOG0394|consen 76 VAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGK--SRQ---------------- 137 (210)
T ss_pred cceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCc--cce----------------
Confidence 99999999999999999876777777774 33333 35999999999986320 000
Q ss_pred HHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHHH
Q 000728 947 EFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1326)
Q Consensus 947 e~~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1326)
.........+... +++|++.+||+.+.||.+.|..+.+..
T Consensus 138 ---VS~~~Aq~WC~s~--------------gnipyfEtSAK~~~NV~~AFe~ia~~a 177 (210)
T KOG0394|consen 138 ---VSEKKAQTWCKSK--------------GNIPYFETSAKEATNVDEAFEEIARRA 177 (210)
T ss_pred ---eeHHHHHHHHHhc--------------CCceeEEecccccccHHHHHHHHHHHH
Confidence 0112333444443 468999999999999999999887654
No 226
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.59 E-value=9.3e-15 Score=170.45 Aligned_cols=152 Identities=22% Similarity=0.297 Sum_probs=97.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCcccccccCcee--eeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcc----
Q 000728 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGIT--QQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES---- 869 (1326)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGIT--q~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~---- 869 (1326)
-|+|||.+++||||||++|+.........+++| .++|...+.. ...|+||||||+..
T Consensus 159 dV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~-----------------~~~~~i~D~PGli~~a~~ 221 (329)
T TIGR02729 159 DVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDD-----------------GRSFVIADIPGLIEGASE 221 (329)
T ss_pred cEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCC-----------------ceEEEEEeCCCcccCCcc
Confidence 499999999999999999997654333333333 3444332211 13499999999742
Q ss_pred ---hhhhhhhccCccceeEEeeccccC---CchhHHHHH-HHHHh-----cCCcEEEEEeccccccCcccCCCchHHHHH
Q 000728 870 ---FTNLRSRGSGLCDIAILVVDIMHG---LEPQTIESL-NLLKM-----RNTEFIVALNKVDRLYGWKTCRNAPIVKAI 937 (1326)
Q Consensus 870 ---F~~lr~rg~~~aDiaILVVDa~~G---v~~QT~E~l-~~l~~-----~~vP~IVvINKiD~~~~w~~~~~a~~~~~L 937 (1326)
+...+.+.+..||++|+|||+++. ...+....| ..+.. .+.|+|||+||||+... ..
T Consensus 222 ~~gLg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~------~~----- 290 (329)
T TIGR02729 222 GAGLGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDE------EE----- 290 (329)
T ss_pred cccHHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCCh------HH-----
Confidence 233445566779999999999864 122233333 22322 36899999999998621 00
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHHH
Q 000728 938 KQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1326)
Q Consensus 938 ~~q~~~~~~e~~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1326)
+..+...+... + .+++|+|||++|+||.+|+.+|..++
T Consensus 291 --------------~~~~~~~l~~~------------~--~~~vi~iSAktg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 291 --------------LAELLKELKKA------------L--GKPVFPISALTGEGLDELLYALAELL 328 (329)
T ss_pred --------------HHHHHHHHHHH------------c--CCcEEEEEccCCcCHHHHHHHHHHHh
Confidence 01111222111 0 14799999999999999999987653
No 227
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.59 E-value=8.4e-15 Score=161.99 Aligned_cols=167 Identities=16% Similarity=0.179 Sum_probs=103.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchhhhhh
Q 000728 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1326)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~~lr~ 875 (1326)
.|+|||..++||||||.+|....+.....+++...+. ..+.+.. ....|.||||+|++.|..++.
T Consensus 3 KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~-~~~~~~~--------------~~v~L~iwDt~G~e~~~~l~~ 67 (222)
T cd04173 3 KIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT-ASFEIDK--------------RRIELNMWDTSGSSYYDNVRP 67 (222)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE-EEEEECC--------------EEEEEEEEeCCCcHHHHHHhH
Confidence 5899999999999999999987765443333322211 1111111 112489999999999999999
Q ss_pred hccCccceeEEeeccccCCchhHH-HHHHH-HH--hcCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000728 876 RGSGLCDIAILVVDIMHGLEPQTI-ESLNL-LK--MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1326)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~-E~l~~-l~--~~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~e~~~~ 951 (1326)
.+++.+|++|||+|+++.-..+.+ ..|.. ++ ..++|+|||+||+|+... ......+..+.. ....
T Consensus 68 ~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~~------~~~~~~~~~~~~-----~pIs 136 (222)
T cd04173 68 LAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTD------LATLRELSKQRL-----IPVT 136 (222)
T ss_pred HhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccccc------hhhhhhhhhccC-----CccC
Confidence 999999999999999885443333 23322 22 246899999999998531 000011100000 0000
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCC-hhhHHHHHHHH
Q 000728 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEG-IPDLLLLLVQW 1002 (1326)
Q Consensus 952 l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeG-I~eLl~~L~~~ 1002 (1326)
........... +.++|+.|||++|.| |.++|..++..
T Consensus 137 ~e~g~~~ak~~--------------~~~~y~E~SAk~~~~~V~~~F~~~~~~ 174 (222)
T cd04173 137 HEQGTVLAKQV--------------GAVSYVECSSRSSERSVRDVFHVATVA 174 (222)
T ss_pred HHHHHHHHHHc--------------CCCEEEEcCCCcCCcCHHHHHHHHHHH
Confidence 00111111111 235899999999995 99999887654
No 228
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.59 E-value=1.1e-14 Score=158.78 Aligned_cols=181 Identities=15% Similarity=0.159 Sum_probs=107.6
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchhhhh
Q 000728 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1326)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~~lr 874 (1326)
|.|+|+|++|+|||||+.+|....+... ...++..++.+++... .....+.|||||||..|..++
T Consensus 1 ~~vll~G~~~sGKTsL~~~l~~~~~~~t-~~s~~~~~~~~~~~~~--------------~~~~~~~l~D~pG~~~~~~~~ 65 (203)
T cd04105 1 PTVLLLGPSDSGKTALFTKLTTGKYRST-VTSIEPNVATFILNSE--------------GKGKKFRLVDVPGHPKLRDKL 65 (203)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCCCc-cCcEeecceEEEeecC--------------CCCceEEEEECCCCHHHHHHH
Confidence 5699999999999999999997755432 2223333333222110 112359999999999999999
Q ss_pred hhccCcc-ceeEEeeccccCC--chhHHHHHHHH----H--hcCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHH
Q 000728 875 SRGSGLC-DIAILVVDIMHGL--EPQTIESLNLL----K--MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQ 945 (1326)
Q Consensus 875 ~rg~~~a-DiaILVVDa~~Gv--~~QT~E~l~~l----~--~~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~ 945 (1326)
..+++.+ +++|||||+.+.. ...+.++|..+ . ..++|+|||+||+|+... .+...+...|......++
T Consensus 66 ~~~~~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a---~~~~~i~~~le~ei~~~~ 142 (203)
T cd04105 66 LETLKNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTA---KPAKKIKEQLEKELNTLR 142 (203)
T ss_pred HHHHhccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhccc---CCHHHHHHHHHHHHHHHH
Confidence 9999998 9999999998852 12233333221 1 147999999999998632 111122222222221111
Q ss_pred HHHHHHHHHHHHHHHHcCCc-hh---------hhhcccCCCcceeEEeCCCcCCC-ChhhHHHHHH
Q 000728 946 NEFNMRLVQIVTQLKEQGMN-TE---------LYYKNKDRGETFNIVPTSAISGE-GIPDLLLLLV 1000 (1326)
Q Consensus 946 ~e~~~~l~~I~~~L~e~Gl~-~e---------~~~~~~d~g~~v~iVpvSA~tGe-GI~eLl~~L~ 1000 (1326)
.... ..|...+-. .. ..+....+...+.|+.+|+..+. ||..+..||.
T Consensus 143 ~~r~-------~~l~~~~~~~~~~~~~~~~~~~~f~f~~~~~~v~~~~~s~~~~~~~~~~~~~w~~ 201 (203)
T cd04105 143 ESRS-------KSLSSLDGDEGSKESLGDKGGKSFEFDQLEGKVEFLEGSVKVDGGGIDGWEEWID 201 (203)
T ss_pred HHHh-------ccccccccccccccccccccCcceeeccCceeEEEEEeEEecCCCChHhHHHHHh
Confidence 1110 011000000 00 00111223457899999999876 6888888774
No 229
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.59 E-value=1.9e-14 Score=148.28 Aligned_cols=153 Identities=24% Similarity=0.336 Sum_probs=101.3
Q ss_pred EEEEeCCCCCHHHHHHHHHcCccc--ccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcc-----
Q 000728 797 CCIMGHVDTGKTKLLDCIRGTNVQ--EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES----- 869 (1326)
Q Consensus 797 V~IlGhvdaGKTTLLd~L~~~~v~--~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~----- 869 (1326)
|+|+|++|+|||||++.|.+.... .....+.|..+..+.+ . ..++|||||||..
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~--~-----------------~~~~~~D~~g~~~~~~~~ 62 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNV--N-----------------DKFRLVDLPGYGYAKVSK 62 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEc--c-----------------CeEEEecCCCccccccCH
Confidence 799999999999999999953322 2222333333221111 1 1599999999754
Q ss_pred -----hhhhhhhcc---CccceeEEeeccccCCchhHHHHHHHHHhcCCcEEEEEeccccccCcccCCCchHHHHHHHhh
Q 000728 870 -----FTNLRSRGS---GLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQN 941 (1326)
Q Consensus 870 -----F~~lr~rg~---~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~ 941 (1326)
|..++..++ ..++++++|+|..+..+......+..+...+.|+++++||+|+... ...
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~~~~vi~v~nK~D~~~~-------~~~------- 128 (170)
T cd01876 63 EVKEKWGKLIEEYLENRENLKGVVLLIDSRHGPTEIDLEMLDWLEELGIPFLVVLTKADKLKK-------SEL------- 128 (170)
T ss_pred HHHHHHHHHHHHHHHhChhhhEEEEEEEcCcCCCHhHHHHHHHHHHcCCCEEEEEEchhcCCh-------HHH-------
Confidence 333333333 3568899999999887777778888888889999999999998621 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHH
Q 000728 942 TDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1326)
Q Consensus 942 ~~~~~e~~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~ 1002 (1326)
......+...+.. +...++++++||++|.|+.+++.+|..+
T Consensus 129 -------~~~~~~~~~~l~~-------------~~~~~~~~~~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 129 -------AKALKEIKKELKL-------------FEIDPPIILFSSLKGQGIDELRALIEKW 169 (170)
T ss_pred -------HHHHHHHHHHHHh-------------ccCCCceEEEecCCCCCHHHHHHHHHHh
Confidence 0001111111211 0134689999999999999999998764
No 230
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.58 E-value=2e-14 Score=159.31 Aligned_cols=187 Identities=21% Similarity=0.279 Sum_probs=109.4
Q ss_pred ccCCCCCEEEEEeCCCCCHHHHHHHHHcCccccccc--CceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCC
Q 000728 789 EENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEA--GGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPG 866 (1326)
Q Consensus 789 ~~~~R~piV~IlGhvdaGKTTLLd~L~~~~v~~ge~--gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPG 866 (1326)
.+..|+..|+|+|.+|+|||||.|.++++.+..-.. .++++++.+.+...+ .++.|+||||
T Consensus 67 ~e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~e-----------------TQlvf~DTPG 129 (379)
T KOG1423|consen 67 EEAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGE-----------------TQLVFYDTPG 129 (379)
T ss_pred hhcceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCc-----------------eEEEEecCCc
Confidence 345788889999999999999999999988653221 223333333322211 3599999999
Q ss_pred Ccc------hh------hhhhhccCccceeEEeeccccCCchhHHHHHHHHHh-cCCcEEEEEeccccccCcccCCCchH
Q 000728 867 HES------FT------NLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKM-RNTEFIVALNKVDRLYGWKTCRNAPI 933 (1326)
Q Consensus 867 he~------F~------~lr~rg~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~-~~vP~IVvINKiD~~~~w~~~~~a~~ 933 (1326)
... +. ....+.+..+|++|+|+|+++.-.+.....|..+.. .++|-|+|+||+|.+.. .
T Consensus 130 lvs~~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys~ips~lvmnkid~~k~------k-- 201 (379)
T KOG1423|consen 130 LVSKKMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYSKIPSILVMNKIDKLKQ------K-- 201 (379)
T ss_pred ccccchhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHhcCCceeeccchhcchh------h--
Confidence 321 11 122356778999999999986333333334444444 46899999999998631 1
Q ss_pred HHHHHHhhHHHHH-HHHHHHHHHHHHHHHcCCchhhhhcc-cCCCcceeEEeCCCcCCCChhhHHHHHHHHH
Q 000728 934 VKAIKQQNTDVQN-EFNMRLVQIVTQLKEQGMNTELYYKN-KDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1326)
Q Consensus 934 ~~~L~~q~~~~~~-e~~~~l~~I~~~L~e~Gl~~e~~~~~-~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1326)
..|......+.+ .+....-.+...+. .......|.. -.|..+-.+|++||++|+||.+|.++|+..+
T Consensus 202 -~~Ll~l~~~Lt~g~l~~~kl~v~~~f~--~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa 270 (379)
T KOG1423|consen 202 -RLLLNLKDLLTNGELAKLKLEVQEKFT--DVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQA 270 (379)
T ss_pred -hHHhhhHHhccccccchhhhhHHHHhc--cCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcC
Confidence 111110000000 00000001111111 1111112211 1255567899999999999999999998754
No 231
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.58 E-value=1.5e-14 Score=175.02 Aligned_cols=155 Identities=20% Similarity=0.242 Sum_probs=99.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcc------
Q 000728 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES------ 869 (1326)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~------ 869 (1326)
.|+|||.+++||||||++|+.........+++|..+....+.+. ...|+||||||...
T Consensus 161 dV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~----------------~~~f~laDtPGliegas~g~ 224 (500)
T PRK12296 161 DVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAG----------------DTRFTVADVPGLIPGASEGK 224 (500)
T ss_pred eEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEEC----------------CeEEEEEECCCCccccchhh
Confidence 49999999999999999999776544455555544332222221 13499999999532
Q ss_pred -hhhhhhhccCccceeEEeeccccC---Cch-hHHHHH-----HHH----------HhcCCcEEEEEeccccccCcccCC
Q 000728 870 -FTNLRSRGSGLCDIAILVVDIMHG---LEP-QTIESL-----NLL----------KMRNTEFIVALNKVDRLYGWKTCR 929 (1326)
Q Consensus 870 -F~~lr~rg~~~aDiaILVVDa~~G---v~~-QT~E~l-----~~l----------~~~~vP~IVvINKiD~~~~w~~~~ 929 (1326)
......+.+..||++|+|||+++. ..+ ..+..| .++ ...+.|+|||+||||++..
T Consensus 225 gLg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da----- 299 (500)
T PRK12296 225 GLGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDA----- 299 (500)
T ss_pred HHHHHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhh-----
Confidence 122334567789999999999742 111 112222 111 1246899999999998521
Q ss_pred CchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHHHHH
Q 000728 930 NAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQK 1005 (1326)
Q Consensus 930 ~a~~~~~L~~q~~~~~~e~~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~q~ 1005 (1326)
..+ ...+...+... .++||+|||++|.||.+|+.+|..++..
T Consensus 300 -~el------------------~e~l~~~l~~~---------------g~~Vf~ISA~tgeGLdEL~~~L~ell~~ 341 (500)
T PRK12296 300 -REL------------------AEFVRPELEAR---------------GWPVFEVSAASREGLRELSFALAELVEE 341 (500)
T ss_pred -HHH------------------HHHHHHHHHHc---------------CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 000 01111122221 1489999999999999999999877654
No 232
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.58 E-value=1.7e-14 Score=171.71 Aligned_cols=158 Identities=16% Similarity=0.171 Sum_probs=100.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcc------
Q 000728 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES------ 869 (1326)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~------ 869 (1326)
-|+|||.+|+||||||++|++........+++|.......+.+.. ...|+|+||||...
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~---------------~~~i~~vDtPGi~~~a~~~~ 225 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDD---------------ERSFVVADIPGLIEGASEGA 225 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCC---------------CcEEEEEeCCCccccccchh
Confidence 399999999999999999998765555555566443333322211 12499999999542
Q ss_pred -hhhhhhhccCccceeEEeecccc----CCchhHHHHHHHHHh-----cCCcEEEEEeccccccCcccCCCchHHHHHHH
Q 000728 870 -FTNLRSRGSGLCDIAILVVDIMH----GLEPQTIESLNLLKM-----RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQ 939 (1326)
Q Consensus 870 -F~~lr~rg~~~aDiaILVVDa~~----Gv~~QT~E~l~~l~~-----~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~ 939 (1326)
+...+.+.+..||++|+|||+.. ....+....+..+.. .+.|+|||+||+|+... ..
T Consensus 226 ~Lg~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~------~e------- 292 (390)
T PRK12298 226 GLGIRFLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDE------EE------- 292 (390)
T ss_pred hHHHHHHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCCh------HH-------
Confidence 22334456888999999999872 111222233344443 35899999999998621 00
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHHHHH
Q 000728 940 QNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQK 1005 (1326)
Q Consensus 940 q~~~~~~e~~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~q~ 1005 (1326)
+...+..+... ++...++|+|||++|.||.+|+..|..+++.
T Consensus 293 ------------l~~~l~~l~~~------------~~~~~~Vi~ISA~tg~GIdeLl~~I~~~L~~ 334 (390)
T PRK12298 293 ------------AEERAKAIVEA------------LGWEGPVYLISAASGLGVKELCWDLMTFIEE 334 (390)
T ss_pred ------------HHHHHHHHHHH------------hCCCCCEEEEECCCCcCHHHHHHHHHHHhhh
Confidence 00111111111 0112368999999999999999999877653
No 233
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.57 E-value=1.2e-14 Score=151.27 Aligned_cols=156 Identities=22% Similarity=0.166 Sum_probs=115.8
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchhhhh
Q 000728 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1326)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~~lr 874 (1326)
..+.|||..|+|||+||-++....++.-...+|..+.|+..+..+... -.|+||||.||++|...+
T Consensus 7 fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~--------------IKlqiwDtaGqe~frsv~ 72 (216)
T KOG0098|consen 7 FKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQ--------------IKLQIWDTAGQESFRSVT 72 (216)
T ss_pred EEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCce--------------EEEEEEecCCcHHHHHHH
Confidence 358999999999999999999888876666667777777766554311 239999999999999999
Q ss_pred hhccCccceeEEeeccccCCchhHHHHH----HHHHhcCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHHHHHH
Q 000728 875 SRGSGLCDIAILVVDIMHGLEPQTIESL----NLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 950 (1326)
Q Consensus 875 ~rg~~~aDiaILVVDa~~Gv~~QT~E~l----~~l~~~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~e~~~ 950 (1326)
..+++.+-++|||+|++..-+...+.+| ++....|.-|+++.||+|+... . . +
T Consensus 73 ~syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~r-----R-~-----------V------ 129 (216)
T KOG0098|consen 73 RSYYRGAAGALLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEAR-----R-E-----------V------ 129 (216)
T ss_pred HHHhccCcceEEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhcc-----c-c-----------c------
Confidence 9999999999999999875544444433 3333456789999999998631 0 0 0
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHH
Q 000728 951 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1326)
Q Consensus 951 ~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~ 1002 (1326)
.-.+-.....++|| .++.+||+|++||.+.|..+...
T Consensus 130 s~EEGeaFA~ehgL---------------ifmETSakt~~~VEEaF~nta~~ 166 (216)
T KOG0098|consen 130 SKEEGEAFAREHGL---------------IFMETSAKTAENVEEAFINTAKE 166 (216)
T ss_pred cHHHHHHHHHHcCc---------------eeehhhhhhhhhHHHHHHHHHHH
Confidence 11223334455664 57799999999999998776543
No 234
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.57 E-value=1.8e-14 Score=159.29 Aligned_cols=155 Identities=14% Similarity=0.085 Sum_probs=95.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCccc-ccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchhhhh
Q 000728 796 ICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1326)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~~~v~-~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~~lr 874 (1326)
.|+|+|..|+|||||+.+|....+. ....+.+..+.....+.+.. ....|+||||||+..+ ++
T Consensus 2 KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~--------------~~~~l~i~Dt~G~~~~--~~ 65 (221)
T cd04148 2 RVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDG--------------EESTLVVIDHWEQEMW--TE 65 (221)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECC--------------EEEEEEEEeCCCcchH--HH
Confidence 5999999999999999999866553 11111111111111111111 1134899999999843 33
Q ss_pred hhccC-ccceeEEeeccccCCchhHHH-HHHHHHh----cCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHHHH
Q 000728 875 SRGSG-LCDIAILVVDIMHGLEPQTIE-SLNLLKM----RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEF 948 (1326)
Q Consensus 875 ~rg~~-~aDiaILVVDa~~Gv~~QT~E-~l~~l~~----~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~e~ 948 (1326)
..++. .+|++|||+|+++.-...... ++..+.. .++|+|||+||+|+... ..+.
T Consensus 66 ~~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~------~~v~-------------- 125 (221)
T cd04148 66 DSCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARS------REVS-------------- 125 (221)
T ss_pred hHHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhcccc------ceec--------------
Confidence 34555 899999999998854333222 2233333 36899999999998521 0000
Q ss_pred HHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHHHH
Q 000728 949 NMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1004 (1326)
Q Consensus 949 ~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~q 1004 (1326)
..... .+... ..+++++|||++|.||.+|+.+|+..+.
T Consensus 126 ---~~~~~-~~a~~--------------~~~~~~e~SA~~~~gv~~l~~~l~~~~~ 163 (221)
T cd04148 126 ---VQEGR-ACAVV--------------FDCKFIETSAGLQHNVDELLEGIVRQIR 163 (221)
T ss_pred ---HHHHH-HHHHH--------------cCCeEEEecCCCCCCHHHHHHHHHHHHH
Confidence 00000 11110 1247899999999999999999986553
No 235
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.56 E-value=3.3e-14 Score=170.17 Aligned_cols=152 Identities=21% Similarity=0.281 Sum_probs=97.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcc------
Q 000728 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES------ 869 (1326)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~------ 869 (1326)
-|+|||.+++||||||++|++........+++|.+.....+.+.. ...|+||||||...
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~---------------~~~~~laD~PGliega~~~~ 224 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDD---------------GRSFVMADIPGLIEGASEGV 224 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeC---------------CceEEEEECCCCcccccccc
Confidence 499999999999999999998764444444555443222222110 23599999999632
Q ss_pred -hhhhhhhccCccceeEEeeccccC--Cch-hHHHH-HHHHHh-----cCCcEEEEEeccccccCcccCCCchHHHHHHH
Q 000728 870 -FTNLRSRGSGLCDIAILVVDIMHG--LEP-QTIES-LNLLKM-----RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQ 939 (1326)
Q Consensus 870 -F~~lr~rg~~~aDiaILVVDa~~G--v~~-QT~E~-l~~l~~-----~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~ 939 (1326)
+...+.+.+..|+++|+|||+++. ..+ ..... +..|.. .++|+|||+||||+.. ..
T Consensus 225 gLg~~fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~-------~~------- 290 (424)
T PRK12297 225 GLGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPE-------AE------- 290 (424)
T ss_pred hHHHHHHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcC-------CH-------
Confidence 223344566779999999999753 122 22222 233333 3689999999999741 00
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHHHH
Q 000728 940 QNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1004 (1326)
Q Consensus 940 q~~~~~~e~~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~q 1004 (1326)
..+..+...+ + +++|+|||++|+||.+|+.+|..++.
T Consensus 291 ----------e~l~~l~~~l----------------~--~~i~~iSA~tgeGI~eL~~~L~~~l~ 327 (424)
T PRK12297 291 ----------ENLEEFKEKL----------------G--PKVFPISALTGQGLDELLYAVAELLE 327 (424)
T ss_pred ----------HHHHHHHHHh----------------C--CcEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 0011111111 1 47999999999999999999987654
No 236
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.55 E-value=5.4e-14 Score=145.97 Aligned_cols=156 Identities=21% Similarity=0.208 Sum_probs=105.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchhhhhh
Q 000728 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1326)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~~lr~ 875 (1326)
.|+|+|+.++|||||+.+|.+..+.......+..+.....+.... ....|.||||||+..|..++.
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--------------~~~~l~i~D~~g~~~~~~~~~ 66 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDG--------------KPVNLEIWDTSGQERFDSLRD 66 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETT--------------EEEEEEEEEETTSGGGHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHhhccccccccccccccccccccccc--------------ccccccccccccccccccccc
Confidence 489999999999999999998776544433332222222222211 012499999999999999999
Q ss_pred hccCccceeEEeeccccCCchhHHHHH----HHHHhcCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000728 876 RGSGLCDIAILVVDIMHGLEPQTIESL----NLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1326)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E~l----~~l~~~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~e~~~~ 951 (1326)
..++.+|++|||+|.++.-....+..| ......++|+||+.||+|+...+ ..+
T Consensus 67 ~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~----~v~------------------- 123 (162)
T PF00071_consen 67 IFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDER----EVS------------------- 123 (162)
T ss_dssp HHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGS----SSC-------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccceeeeccccccccc----cch-------------------
Confidence 999999999999999874333332222 22222358999999999986311 000
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHHH
Q 000728 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1326)
Q Consensus 952 l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1326)
...+......+ + ++++.|||++|.||.++|..|+..+
T Consensus 124 ~~~~~~~~~~~--------------~-~~~~e~Sa~~~~~v~~~f~~~i~~i 160 (162)
T PF00071_consen 124 VEEAQEFAKEL--------------G-VPYFEVSAKNGENVKEIFQELIRKI 160 (162)
T ss_dssp HHHHHHHHHHT--------------T-SEEEEEBTTTTTTHHHHHHHHHHHH
T ss_pred hhHHHHHHHHh--------------C-CEEEEEECCCCCCHHHHHHHHHHHH
Confidence 11122222222 1 6999999999999999999887654
No 237
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.55 E-value=3.4e-14 Score=171.70 Aligned_cols=149 Identities=21% Similarity=0.242 Sum_probs=105.4
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCcc-cccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchhh
Q 000728 794 SPICCIMGHVDTGKTKLLDCIRGTNV-QEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 872 (1326)
Q Consensus 794 ~piV~IlGhvdaGKTTLLd~L~~~~v-~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~~ 872 (1326)
.+.|+|+|++|+|||||+++|++... .....+|+|.++....+.+. ...++||||||+..+..
T Consensus 203 g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~----------------g~~v~l~DTaG~~~~~~ 266 (442)
T TIGR00450 203 GFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELN----------------GILIKLLDTAGIREHAD 266 (442)
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEEC----------------CEEEEEeeCCCcccchh
Confidence 35699999999999999999998653 23455777776544333322 23489999999866543
Q ss_pred h--------hhhccCccceeEEeeccccCCchhHHHHHHHHHhcCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHH
Q 000728 873 L--------RSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDV 944 (1326)
Q Consensus 873 l--------r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~ 944 (1326)
. ...++..+|++|||||++++...... +|..+...++|+|||+||+|+... +.
T Consensus 267 ~ie~~gi~~~~~~~~~aD~il~V~D~s~~~s~~~~-~l~~~~~~~~piIlV~NK~Dl~~~-------~~----------- 327 (442)
T TIGR00450 267 FVERLGIEKSFKAIKQADLVIYVLDASQPLTKDDF-LIIDLNKSKKPFILVLNKIDLKIN-------SL----------- 327 (442)
T ss_pred HHHHHHHHHHHHHHhhCCEEEEEEECCCCCChhHH-HHHHHhhCCCCEEEEEECccCCCc-------ch-----------
Confidence 2 23567889999999999988766655 556666668999999999998520 00
Q ss_pred HHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHHHH
Q 000728 945 QNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1004 (1326)
Q Consensus 945 ~~e~~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~q 1004 (1326)
. .+... ..+++++|||++ .||.+++..|...+.
T Consensus 328 --------~----~~~~~--------------~~~~~~~vSak~-~gI~~~~~~L~~~i~ 360 (442)
T TIGR00450 328 --------E----FFVSS--------------KVLNSSNLSAKQ-LKIKALVDLLTQKIN 360 (442)
T ss_pred --------h----hhhhh--------------cCCceEEEEEec-CCHHHHHHHHHHHHH
Confidence 0 01000 014688999998 599999988876553
No 238
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.55 E-value=5.7e-14 Score=150.71 Aligned_cols=165 Identities=18% Similarity=0.149 Sum_probs=99.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchhhhhh
Q 000728 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1326)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~~lr~ 875 (1326)
.|+|+|+.|+|||||+++|....+.....+.+...+.. .+.... ....+++|||||+..|..++.
T Consensus 3 Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~~-~~~~~~--------------~~~~l~i~Dt~g~~~~~~~~~ 67 (187)
T cd04129 3 KLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYVT-DCRVDG--------------KPVQLALWDTAGQEEYERLRP 67 (187)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEE-EEEECC--------------EEEEEEEEECCCChhccccch
Confidence 58999999999999999998665543222221111110 010000 012488999999999988877
Q ss_pred hccCccceeEEeeccccCCchhHHH--HHHHHHh--cCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000728 876 RGSGLCDIAILVVDIMHGLEPQTIE--SLNLLKM--RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1326)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E--~l~~l~~--~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~e~~~~ 951 (1326)
..++.+|++|+|+|+++.-..+.+. ++..++. .++|+|||+||+|+...-.. ... ..... +. .
T Consensus 68 ~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~~~---~~~-~~~~~--------~~-~ 134 (187)
T cd04129 68 LSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVA---KEE-YRTQR--------FV-P 134 (187)
T ss_pred hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCccc---ccc-cccCC--------cC-C
Confidence 7889999999999997644333332 2333332 36999999999998531000 000 00000 00 0
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHH
Q 000728 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1326)
Q Consensus 952 l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~ 1002 (1326)
........... +.+++|+|||++|.||.++|.+|...
T Consensus 135 ~~~~~~~~~~~--------------~~~~~~e~Sa~~~~~v~~~f~~l~~~ 171 (187)
T cd04129 135 IQQGKRVAKEI--------------GAKKYMECSALTGEGVDDVFEAATRA 171 (187)
T ss_pred HHHHHHHHHHh--------------CCcEEEEccCCCCCCHHHHHHHHHHH
Confidence 00111111111 23479999999999999999998753
No 239
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.55 E-value=5.1e-14 Score=154.39 Aligned_cols=159 Identities=17% Similarity=0.146 Sum_probs=105.0
Q ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcch
Q 000728 791 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF 870 (1326)
Q Consensus 791 ~~R~piV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F 870 (1326)
+.....|+|+|+.|+|||||+++++...+.....+++...+....+.... ....|.+|||||+..|
T Consensus 6 ~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--------------~~i~i~~~Dt~g~~~~ 71 (215)
T PTZ00132 6 EVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNC--------------GPICFNVWDTAGQEKF 71 (215)
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECC--------------eEEEEEEEECCCchhh
Confidence 34446799999999999999998876655433222222222222111110 1124899999999999
Q ss_pred hhhhhhccCccceeEEeeccccCCchhHHHHHH-HHH--hcCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHHH
Q 000728 871 TNLRSRGSGLCDIAILVVDIMHGLEPQTIESLN-LLK--MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNE 947 (1326)
Q Consensus 871 ~~lr~rg~~~aDiaILVVDa~~Gv~~QT~E~l~-~l~--~~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~e 947 (1326)
..++..++..++++|+|+|+++..+.+++..|. .+. ..++|+++++||+|+... ...
T Consensus 72 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~~~-----~~~--------------- 131 (215)
T PTZ00132 72 GGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVDVKDR-----QVK--------------- 131 (215)
T ss_pred hhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCccc-----cCC---------------
Confidence 999998999999999999998866655554442 221 246899999999998521 000
Q ss_pred HHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHHH
Q 000728 948 FNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1326)
Q Consensus 948 ~~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1326)
......+... .+.++++||++|.||..++.+|...+
T Consensus 132 -----~~~~~~~~~~---------------~~~~~e~Sa~~~~~v~~~f~~ia~~l 167 (215)
T PTZ00132 132 -----ARQITFHRKK---------------NLQYYDISAKSNYNFEKPFLWLARRL 167 (215)
T ss_pred -----HHHHHHHHHc---------------CCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 0001111111 24789999999999999988877543
No 240
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.55 E-value=3.6e-14 Score=151.47 Aligned_cols=162 Identities=20% Similarity=0.130 Sum_probs=110.8
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchh
Q 000728 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 871 (1326)
Q Consensus 792 ~R~piV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~ 871 (1326)
-+-.+|+++|..++|||+||.++....+.......|..++-...+.... ..-.+.||||.|++.|.
T Consensus 10 d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g--------------~~i~lQiWDtaGQerf~ 75 (207)
T KOG0078|consen 10 DYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDG--------------KKIKLQIWDTAGQERFR 75 (207)
T ss_pred ceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCC--------------eEEEEEEEEcccchhHH
Confidence 3456799999999999999999998776644433333332222222211 11249999999999999
Q ss_pred hhhhhccCccceeEEeeccccCCchhHHH----HHHHHHhcCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHHH
Q 000728 872 NLRSRGSGLCDIAILVVDIMHGLEPQTIE----SLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNE 947 (1326)
Q Consensus 872 ~lr~rg~~~aDiaILVVDa~~Gv~~QT~E----~l~~l~~~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~e 947 (1326)
.+...|++.++++|||+|+++......+. .|......++|+|+|.||+|+... +. +..
T Consensus 76 ti~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~----R~-------------V~~- 137 (207)
T KOG0078|consen 76 TITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEK----RQ-------------VSK- 137 (207)
T ss_pred HHHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeecccccccc----cc-------------ccH-
Confidence 99999999999999999998754433332 223333347999999999998621 10 011
Q ss_pred HHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHHHHH
Q 000728 948 FNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQK 1005 (1326)
Q Consensus 948 ~~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~q~ 1005 (1326)
.+-.....++| ++|+.|||++|.||.+.|..|...+..
T Consensus 138 -----e~ge~lA~e~G---------------~~F~EtSAk~~~NI~eaF~~La~~i~~ 175 (207)
T KOG0078|consen 138 -----ERGEALAREYG---------------IKFFETSAKTNFNIEEAFLSLARDILQ 175 (207)
T ss_pred -----HHHHHHHHHhC---------------CeEEEccccCCCCHHHHHHHHHHHHHh
Confidence 11112223333 689999999999999999888765543
No 241
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.54 E-value=3.3e-14 Score=141.66 Aligned_cols=151 Identities=24% Similarity=0.224 Sum_probs=100.0
Q ss_pred EEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchhhhhhhcc
Q 000728 799 IMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSRGS 878 (1326)
Q Consensus 799 IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~~lr~rg~ 878 (1326)
|+|++|+|||||+++|.+..............+....+... .....++||||||+..+...+...+
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~--------------~~~~~~~l~D~~g~~~~~~~~~~~~ 66 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTIIDFYSKTIEVD--------------GKKVKLQIWDTAGQERFRSLRRLYY 66 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccchhheeeEEEEEC--------------CEEEEEEEEecCChHHHHhHHHHHh
Confidence 58999999999999999876521111111122221211110 0123599999999999988888889
Q ss_pred CccceeEEeeccccCCchhHHHHH-----HHHHhcCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHHHHHHHHH
Q 000728 879 GLCDIAILVVDIMHGLEPQTIESL-----NLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLV 953 (1326)
Q Consensus 879 ~~aDiaILVVDa~~Gv~~QT~E~l-----~~l~~~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~e~~~~l~ 953 (1326)
..+|++|+|+|++++........+ ......++|+||++||+|+... ... ...
T Consensus 67 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~------~~~-~~~---------------- 123 (157)
T cd00882 67 RGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEE------RVV-SEE---------------- 123 (157)
T ss_pred cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccc------cch-HHH----------------
Confidence 999999999999987665555443 2334557999999999998631 000 000
Q ss_pred HHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHH
Q 000728 954 QIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLV 1000 (1326)
Q Consensus 954 ~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~ 1000 (1326)
.....+.. ...++++++|+.+|.|+..++.+|.
T Consensus 124 ~~~~~~~~--------------~~~~~~~~~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 124 ELAEQLAK--------------ELGVPYFETSAKTGENVEELFEELA 156 (157)
T ss_pred HHHHHHHh--------------hcCCcEEEEecCCCCChHHHHHHHh
Confidence 00011111 1246899999999999999998875
No 242
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.53 E-value=2.9e-14 Score=146.03 Aligned_cols=136 Identities=26% Similarity=0.340 Sum_probs=98.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCC----Ccchh
Q 000728 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPG----HESFT 871 (1326)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPG----he~F~ 871 (1326)
.|.|||.+++|||||+.+|.+...... .||.+. + .=.+||||| +..|.
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~~~~----KTq~i~--~----------------------~~~~IDTPGEyiE~~~~y 54 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEIRYK----KTQAIE--Y----------------------YDNTIDTPGEYIENPRFY 54 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCCCcC----ccceeE--e----------------------cccEEECChhheeCHHHH
Confidence 389999999999999999987654321 344432 1 124699999 55566
Q ss_pred hhhhhccCccceeEEeeccccCCchhHHHHHHHHHhcCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000728 872 NLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1326)
Q Consensus 872 ~lr~rg~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~e~~~~ 951 (1326)
......+..||+++||+|++.... ...-.++...+.|+|=||||+|+..+ ...
T Consensus 55 ~aLi~ta~dad~V~ll~dat~~~~---~~pP~fa~~f~~pvIGVITK~Dl~~~------------------------~~~ 107 (143)
T PF10662_consen 55 HALIVTAQDADVVLLLQDATEPRS---VFPPGFASMFNKPVIGVITKIDLPSD------------------------DAN 107 (143)
T ss_pred HHHHHHHhhCCEEEEEecCCCCCc---cCCchhhcccCCCEEEEEECccCccc------------------------hhh
Confidence 666667778999999999987532 11223445667999999999999621 123
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHH
Q 000728 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLV 1000 (1326)
Q Consensus 952 l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~ 1000 (1326)
+......|...|+. .+|+||+++|+||.+|.++|-
T Consensus 108 i~~a~~~L~~aG~~--------------~if~vS~~~~eGi~eL~~~L~ 142 (143)
T PF10662_consen 108 IERAKKWLKNAGVK--------------EIFEVSAVTGEGIEELKDYLE 142 (143)
T ss_pred HHHHHHHHHHcCCC--------------CeEEEECCCCcCHHHHHHHHh
Confidence 45566677777652 569999999999999988763
No 243
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.52 E-value=8.2e-14 Score=145.95 Aligned_cols=148 Identities=18% Similarity=0.135 Sum_probs=93.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeE--eccccchhhhhhhccccccCCCCEEEEeCCCCcchhhh
Q 000728 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATY--FPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL 873 (1326)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~--~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~~l 873 (1326)
.|+|+|+.|+|||||+.+++...+.....+ + .+.+. +.+.. ....+.||||+|+..+
T Consensus 2 ki~vvG~~gvGKTsli~~~~~~~f~~~~~~--~--~~~~~~~i~~~~--------------~~~~l~i~D~~g~~~~--- 60 (158)
T cd04103 2 KLGIVGNLQSGKSALVHRYLTGSYVQLESP--E--GGRFKKEVLVDG--------------QSHLLLIRDEGGAPDA--- 60 (158)
T ss_pred EEEEECCCCCcHHHHHHHHHhCCCCCCCCC--C--ccceEEEEEECC--------------EEEEEEEEECCCCCch---
Confidence 589999999999999999987655432111 1 11111 11110 0123899999999753
Q ss_pred hhhccCccceeEEeeccccCCchhHHHHH-HHHHh----cCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHHHH
Q 000728 874 RSRGSGLCDIAILVVDIMHGLEPQTIESL-NLLKM----RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEF 948 (1326)
Q Consensus 874 r~rg~~~aDiaILVVDa~~Gv~~QT~E~l-~~l~~----~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~e~ 948 (1326)
++++.+|++|||+|.++.-..+....| ..+.. .++|+|||.||+|+... +...+ ..
T Consensus 61 --~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~----~~~~v-----------~~-- 121 (158)
T cd04103 61 --QFASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISES----NPRVI-----------DD-- 121 (158)
T ss_pred --hHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhc----CCccc-----------CH--
Confidence 345679999999999987666654333 33332 35799999999997410 00000 00
Q ss_pred HHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHH
Q 000728 949 NMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1001 (1326)
Q Consensus 949 ~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~ 1001 (1326)
... ..|... ...++|++|||++|.||.++|..++.
T Consensus 122 ----~~~-~~~~~~-------------~~~~~~~e~SAk~~~~i~~~f~~~~~ 156 (158)
T cd04103 122 ----ARA-RQLCAD-------------MKRCSYYETCATYGLNVERVFQEAAQ 156 (158)
T ss_pred ----HHH-HHHHHH-------------hCCCcEEEEecCCCCCHHHHHHHHHh
Confidence 000 112111 02368999999999999999998864
No 244
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.51 E-value=6.4e-14 Score=153.10 Aligned_cols=198 Identities=22% Similarity=0.302 Sum_probs=117.5
Q ss_pred ccCCCCCEEEEEeCCCCCHHHHHHHHHcCcccc---------------------------------------cccCceee
Q 000728 789 EENLRSPICCIMGHVDTGKTKLLDCIRGTNVQE---------------------------------------GEAGGITQ 829 (1326)
Q Consensus 789 ~~~~R~piV~IlGhvdaGKTTLLd~L~~~~v~~---------------------------------------ge~gGITq 829 (1326)
...-|+++|.|+|..|+|||||+.+|...-.+. |..|||+.
T Consensus 14 ~~~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~T 93 (366)
T KOG1532|consen 14 GAIQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVT 93 (366)
T ss_pred ccccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhh
Confidence 344577789999999999999999996432221 22233332
Q ss_pred eeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCc-chhhhhh-------hccCccceeEEeeccccCCchhHHHH
Q 000728 830 QIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHE-SFTNLRS-------RGSGLCDIAILVVDIMHGLEPQTIES 901 (1326)
Q Consensus 830 ~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe-~F~~lr~-------rg~~~aDiaILVVDa~~Gv~~QT~E~ 901 (1326)
.+..+...+......... .-....+.||||||+. .|+...+ ......-++++|||....-.|.|.-+
T Consensus 94 sLNLF~tk~dqv~~~iek-----~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMS 168 (366)
T KOG1532|consen 94 SLNLFATKFDQVIELIEK-----RAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMS 168 (366)
T ss_pred hHHHHHHHHHHHHHHHHH-----hhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHH
Confidence 222111111100000000 0011348999999964 4432211 12344567899999877666666533
Q ss_pred -----HHHHHhcCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHcCCchhhhhcccCC
Q 000728 902 -----LNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM-RLVQIVTQLKEQGMNTELYYKNKDR 975 (1326)
Q Consensus 902 -----l~~l~~~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~e~~~-~l~~I~~~L~e~Gl~~e~~~~~~d~ 975 (1326)
..+|....+|+|||.||+|+. ...|...+.......+..+.. .-..+...+....|..+-||.
T Consensus 169 NMlYAcSilyktklp~ivvfNK~Dv~-------d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~---- 237 (366)
T KOG1532|consen 169 NMLYACSILYKTKLPFIVVFNKTDVS-------DSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYR---- 237 (366)
T ss_pred HHHHHHHHHHhccCCeEEEEeccccc-------ccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHh----
Confidence 345566789999999999997 456766666555555544442 111222233333344444443
Q ss_pred CcceeEEeCCCcCCCChhhHHHHHHHHHH
Q 000728 976 GETFNIVPTSAISGEGIPDLLLLLVQWTQ 1004 (1326)
Q Consensus 976 g~~v~iVpvSA~tGeGI~eLl~~L~~~~q 1004 (1326)
.+.+|.||+.||.|++++|..+-..+.
T Consensus 238 --~lrtv~VSs~tG~G~ddf~~av~~~vd 264 (366)
T KOG1532|consen 238 --SLRTVGVSSVTGEGFDDFFTAVDESVD 264 (366)
T ss_pred --hCceEEEecccCCcHHHHHHHHHHHHH
Confidence 478999999999999999988765543
No 245
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.50 E-value=7.9e-14 Score=174.05 Aligned_cols=146 Identities=25% Similarity=0.294 Sum_probs=103.9
Q ss_pred eCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchhhh------h
Q 000728 801 GHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL------R 874 (1326)
Q Consensus 801 GhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~~l------r 874 (1326)
|.+|+|||||+++|++.++..+..+|+|.+.....+.+.. ..++||||||+.+|... +
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~----------------~~i~lvDtPG~~~~~~~s~~e~v~ 64 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQG----------------EDIEIVDLPGIYSLTTFSLEEEVA 64 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECC----------------eEEEEEECCCccccCccchHHHHH
Confidence 8899999999999999887777888888877554443321 34899999999988653 2
Q ss_pred hhc--cCccceeEEeeccccCCchhHHHHHHHHHhcCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHHHHHHHH
Q 000728 875 SRG--SGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRL 952 (1326)
Q Consensus 875 ~rg--~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~e~~~~l 952 (1326)
..+ ...+|++|+|+|+++. ......+.++...++|+|||+||+|+... ..+. ..
T Consensus 65 ~~~l~~~~aDvvI~VvDat~l--er~l~l~~ql~~~~~PiIIVlNK~Dl~~~------~~i~---------------~d- 120 (591)
T TIGR00437 65 RDYLLNEKPDLVVNVVDASNL--ERNLYLTLQLLELGIPMILALNLVDEAEK------KGIR---------------ID- 120 (591)
T ss_pred HHHHhhcCCCEEEEEecCCcc--hhhHHHHHHHHhcCCCEEEEEehhHHHHh------CCCh---------------hh-
Confidence 222 2468999999999873 23445555666789999999999998521 0000 00
Q ss_pred HHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHHH
Q 000728 953 VQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1326)
Q Consensus 953 ~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1326)
...+.+. + .+++++|||++|.||++|++.|....
T Consensus 121 ---~~~L~~~------------l--g~pvv~tSA~tg~Gi~eL~~~i~~~~ 154 (591)
T TIGR00437 121 ---EEKLEER------------L--GVPVVPTSATEGRGIERLKDAIRKAI 154 (591)
T ss_pred ---HHHHHHH------------c--CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 0111111 1 15899999999999999999987653
No 246
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.49 E-value=1.3e-13 Score=139.98 Aligned_cols=161 Identities=19% Similarity=0.146 Sum_probs=114.3
Q ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcch
Q 000728 791 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF 870 (1326)
Q Consensus 791 ~~R~piV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F 870 (1326)
..-...|.|+|..|+||||||-++....+.......|..++-..++.....+ ..+.||||.|++.|
T Consensus 8 ~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~--------------~KlaiWDTAGqErF 73 (209)
T KOG0080|consen 8 YDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKR--------------LKLAIWDTAGQERF 73 (209)
T ss_pred cceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCce--------------EEEEEEeccchHhh
Confidence 3445679999999999999999999888876665556666555555444322 34999999999999
Q ss_pred hhhhhhccCccceeEEeeccccCCchhHHHHHHH-HHh----cCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHH
Q 000728 871 TNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNL-LKM----RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQ 945 (1326)
Q Consensus 871 ~~lr~rg~~~aDiaILVVDa~~Gv~~QT~E~l~~-l~~----~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~ 945 (1326)
+.++..+++.+-++|||+|.+..-+...+.+|.. +.. .++-.++|.||||+... +-.
T Consensus 74 RtLTpSyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~----R~V-------------- 135 (209)
T KOG0080|consen 74 RTLTPSYYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESE----RVV-------------- 135 (209)
T ss_pred hccCHhHhccCceeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhc----ccc--------------
Confidence 9999999999999999999987655555555532 222 24567889999997521 100
Q ss_pred HHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHHH
Q 000728 946 NEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1326)
Q Consensus 946 ~e~~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1326)
-.+.|+.-+.. ..+-|+.+||+|.+||...|+.|+..+
T Consensus 136 -------------~reEG~kfAr~-------h~~LFiE~SAkt~~~V~~~FeelveKI 173 (209)
T KOG0080|consen 136 -------------DREEGLKFARK-------HRCLFIECSAKTRENVQCCFEELVEKI 173 (209)
T ss_pred -------------cHHHHHHHHHh-------hCcEEEEcchhhhccHHHHHHHHHHHH
Confidence 01112111111 136799999999999999998876543
No 247
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.49 E-value=2.9e-13 Score=146.90 Aligned_cols=122 Identities=16% Similarity=0.135 Sum_probs=71.6
Q ss_pred CEEEEEeCCCCCHHHHHH-HHHcCccccccc-Cceeeeeee---eEeccccchhhhhhhccccccCCCCEEEEeCCCCcc
Q 000728 795 PICCIMGHVDTGKTKLLD-CIRGTNVQEGEA-GGITQQIGA---TYFPAENIRERTRELKANATLKVPGLLVIDTPGHES 869 (1326)
Q Consensus 795 piV~IlGhvdaGKTTLLd-~L~~~~v~~ge~-gGITq~iga---~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~ 869 (1326)
..|+|+|+.++|||||+. ++....+..+.. ....+++|. +.............+. -....|.||||+|++.
T Consensus 3 ~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~----~~~v~l~iwDTaG~~~ 78 (195)
T cd01873 3 IKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVD----GVSVSLRLWDTFGDHD 78 (195)
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeC----CEEEEEEEEeCCCChh
Confidence 369999999999999996 554433321110 111122221 1000000000000000 0113599999999876
Q ss_pred hhhhhhhccCccceeEEeeccccCCchhHHH-HH-HHHHh--cCCcEEEEEeccccc
Q 000728 870 FTNLRSRGSGLCDIAILVVDIMHGLEPQTIE-SL-NLLKM--RNTEFIVALNKVDRL 922 (1326)
Q Consensus 870 F~~lr~rg~~~aDiaILVVDa~~Gv~~QT~E-~l-~~l~~--~~vP~IVvINKiD~~ 922 (1326)
+ ++..+++.+|++|||+|+++....+... .| ..++. .++|+|||+||+|+.
T Consensus 79 ~--~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~ 133 (195)
T cd01873 79 K--DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLR 133 (195)
T ss_pred h--hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcc
Confidence 3 5666889999999999998865544442 23 33332 368999999999985
No 248
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.48 E-value=2.4e-13 Score=136.23 Aligned_cols=165 Identities=19% Similarity=0.169 Sum_probs=116.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchhhhhh
Q 000728 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1326)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~~lr~ 875 (1326)
.+.|||...+||||||-+.+...++..-...+..+ |...++.... +.-.+.||||.|++.|+.++.
T Consensus 23 KlliiGnssvGKTSfl~ry~ddSFt~afvsTvGid-----FKvKTvyr~~---------kRiklQiwDTagqEryrtiTT 88 (193)
T KOG0093|consen 23 KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGID-----FKVKTVYRSD---------KRIKLQIWDTAGQERYRTITT 88 (193)
T ss_pred eEEEEccCCccchhhhHHhhccccccceeeeeeee-----EEEeEeeecc---------cEEEEEEEecccchhhhHHHH
Confidence 59999999999999999999887765332222222 1111221111 112499999999999999999
Q ss_pred hccCccceeEEeeccccCCchhHHHHH----HHHHhcCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000728 876 RGSGLCDIAILVVDIMHGLEPQTIESL----NLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1326)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E~l----~~l~~~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~e~~~~ 951 (1326)
.+++.++++||++|+++.-.....+.| .+..-.+.|+|+|.||||+... +-. .
T Consensus 89 ayyRgamgfiLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~e----Rvi-------------------s 145 (193)
T KOG0093|consen 89 AYYRGAMGFILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSE----RVI-------------------S 145 (193)
T ss_pred HHhhccceEEEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccc----eee-------------------e
Confidence 999999999999999886554444443 3334458999999999998521 110 1
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHHHHHhHhhhhh
Q 000728 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLT 1012 (1326)
Q Consensus 952 l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~q~~l~e~l~ 1012 (1326)
.++......+.|+ .++.+||+.+.||.++|..|+..+-..|.+.+.
T Consensus 146 ~e~g~~l~~~LGf---------------efFEtSaK~NinVk~~Fe~lv~~Ic~kmsesl~ 191 (193)
T KOG0093|consen 146 HERGRQLADQLGF---------------EFFETSAKENINVKQVFERLVDIICDKMSESLD 191 (193)
T ss_pred HHHHHHHHHHhCh---------------HHhhhcccccccHHHHHHHHHHHHHHHhhhhhc
Confidence 1233334444453 689999999999999999999888777776553
No 249
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.46 E-value=3.1e-13 Score=143.76 Aligned_cols=161 Identities=18% Similarity=0.166 Sum_probs=114.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchhhhhh
Q 000728 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1326)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~~lr~ 875 (1326)
.|+++|.+++|||-||.++....+.......|...++...+..+. +....+||||.|+++|..+.+
T Consensus 16 KiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~--------------k~vkaqIWDTAGQERyrAitS 81 (222)
T KOG0087|consen 16 KIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDG--------------KTVKAQIWDTAGQERYRAITS 81 (222)
T ss_pred EEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecC--------------cEEEEeeecccchhhhccccc
Confidence 489999999999999999998887766555555555443333221 112489999999999999999
Q ss_pred hccCccceeEEeeccccCCchhHHHHH-HHHHhc---CCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000728 876 RGSGLCDIAILVVDIMHGLEPQTIESL-NLLKMR---NTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1326)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E~l-~~l~~~---~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~e~~~~ 951 (1326)
.+++.+-++|||+|++...+.+..+.| ..|+.+ ++++++|.||+||..- .. +.
T Consensus 82 aYYrgAvGAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~l-ra----------------V~------ 138 (222)
T KOG0087|consen 82 AYYRGAVGALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHL-RA----------------VP------ 138 (222)
T ss_pred hhhcccceeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhc-cc----------------cc------
Confidence 999999999999999886665554433 455543 7899999999998520 00 00
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHHHHHhHh
Q 000728 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMV 1008 (1326)
Q Consensus 952 l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~q~~l~ 1008 (1326)
..........+| ..++.+||+.+.||...|..++..+-..+.
T Consensus 139 te~~k~~Ae~~~---------------l~f~EtSAl~~tNVe~aF~~~l~~I~~~vs 180 (222)
T KOG0087|consen 139 TEDGKAFAEKEG---------------LFFLETSALDATNVEKAFERVLTEIYKIVS 180 (222)
T ss_pred hhhhHhHHHhcC---------------ceEEEecccccccHHHHHHHHHHHHHHHHH
Confidence 011111112222 489999999999999999877765544433
No 250
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.45 E-value=5.2e-13 Score=136.57 Aligned_cols=158 Identities=22% Similarity=0.243 Sum_probs=108.6
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchhh
Q 000728 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 872 (1326)
Q Consensus 793 R~piV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~~ 872 (1326)
|...|.|+|..|+|||||+.+|++-... +|...+|+-.-. ..++.+.++|||..|+..+..
T Consensus 15 rE~riLiLGLdNsGKTti~~kl~~~~~~-----~i~pt~gf~Ikt--------------l~~~~~~L~iwDvGGq~~lr~ 75 (185)
T KOG0073|consen 15 REVRILILGLDNSGKTTIVKKLLGEDTD-----TISPTLGFQIKT--------------LEYKGYTLNIWDVGGQKTLRS 75 (185)
T ss_pred heeEEEEEecCCCCchhHHHHhcCCCcc-----ccCCccceeeEE--------------EEecceEEEEEEcCCcchhHH
Confidence 4556999999999999999999876522 222333221111 123456799999999999999
Q ss_pred hhhhccCccceeEEeeccccCC-chhHHHHHHHH----HhcCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHHH
Q 000728 873 LRSRGSGLCDIAILVVDIMHGL-EPQTIESLNLL----KMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNE 947 (1326)
Q Consensus 873 lr~rg~~~aDiaILVVDa~~Gv-~~QT~E~l~~l----~~~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~e 947 (1326)
.|..|+..+|++|+|||..+.. +..+...|..| +..+.|++|+.||.|+.+...
T Consensus 76 ~W~nYfestdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~--------------------- 134 (185)
T KOG0073|consen 76 YWKNYFESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALS--------------------- 134 (185)
T ss_pred HHHHhhhccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccC---------------------
Confidence 9999999999999999998754 34555555544 335789999999999863211
Q ss_pred HHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHHH
Q 000728 948 FNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1326)
Q Consensus 948 ~~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1326)
.+.|...+. + +.+.. ...+++|-|||.||+++.+-++||+.-+
T Consensus 135 ----~~~i~~~~~---L--~~l~k----s~~~~l~~cs~~tge~l~~gidWL~~~l 177 (185)
T KOG0073|consen 135 ----LEEISKALD---L--EELAK----SHHWRLVKCSAVTGEDLLEGIDWLCDDL 177 (185)
T ss_pred ----HHHHHHhhC---H--HHhcc----ccCceEEEEeccccccHHHHHHHHHHHH
Confidence 011111110 0 11101 2357999999999999988888887543
No 251
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.45 E-value=3e-13 Score=135.52 Aligned_cols=156 Identities=17% Similarity=0.132 Sum_probs=110.5
Q ss_pred EEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchhhhhhh
Q 000728 797 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSR 876 (1326)
Q Consensus 797 V~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~~lr~r 876 (1326)
.+|||.+|+|||+|+-+++...++.+....|..++-.-.+++...+ ..+.||||.|++.|+.+...
T Consensus 11 llIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~--------------VkLqIwDtAGqErFrtitst 76 (198)
T KOG0079|consen 11 LLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDR--------------VKLQIWDTAGQERFRTITST 76 (198)
T ss_pred HHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcE--------------EEEEEeecccHHHHHHHHHH
Confidence 6899999999999999999887775543333333333333332211 24999999999999999999
Q ss_pred ccCccceeEEeeccccCCchhHHHHHH-HHHhc--CCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHHHHHHHHH
Q 000728 877 GSGLCDIAILVVDIMHGLEPQTIESLN-LLKMR--NTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLV 953 (1326)
Q Consensus 877 g~~~aDiaILVVDa~~Gv~~QT~E~l~-~l~~~--~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~e~~~~l~ 953 (1326)
+++.++++|+|+|.++|-......-|. .++.. .+|-|+|.||.|.+. +..-. -.
T Consensus 77 yyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~ncdsv~~vLVGNK~d~~~-----RrvV~------------------t~ 133 (198)
T KOG0079|consen 77 YYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNCDSVPKVLVGNKNDDPE-----RRVVD------------------TE 133 (198)
T ss_pred HccCCceEEEEEECcchhhhHhHHHHHHHHHhcCccccceecccCCCCcc-----ceeee------------------hH
Confidence 999999999999999987765554443 33332 478999999999862 11110 01
Q ss_pred HHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHHHH
Q 000728 954 QIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1004 (1326)
Q Consensus 954 ~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~q 1004 (1326)
........+ .+.+|.+||+...|+..+|..|..+..
T Consensus 134 dAr~~A~~m---------------gie~FETSaKe~~NvE~mF~cit~qvl 169 (198)
T KOG0079|consen 134 DARAFALQM---------------GIELFETSAKENENVEAMFHCITKQVL 169 (198)
T ss_pred HHHHHHHhc---------------CchheehhhhhcccchHHHHHHHHHHH
Confidence 112222222 368999999999999999988876543
No 252
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.44 E-value=4.7e-13 Score=157.67 Aligned_cols=150 Identities=21% Similarity=0.290 Sum_probs=110.2
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCccc-ccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchhhh
Q 000728 795 PICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL 873 (1326)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~~~v~-~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~~l 873 (1326)
..|+|+|.||+|||||||+|++.... ....+|+|+++--.++... +..|.|+||.|...-...
T Consensus 218 ~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~----------------G~pv~l~DTAGiRet~d~ 281 (454)
T COG0486 218 LKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLN----------------GIPVRLVDTAGIRETDDV 281 (454)
T ss_pred ceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEEC----------------CEEEEEEecCCcccCccH
Confidence 35999999999999999999987654 3556778888755555443 345999999995443222
Q ss_pred -------hh-hccCccceeEEeeccccCCchhHHHHHHHHHhcCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHH
Q 000728 874 -------RS-RGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQ 945 (1326)
Q Consensus 874 -------r~-rg~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~ 945 (1326)
|+ ..+..||+++||+|++.++..+....+. +...+.|+|+|+||+|+...|..
T Consensus 282 VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~~~~~-~~~~~~~~i~v~NK~DL~~~~~~------------------ 342 (454)
T COG0486 282 VERIGIERAKKAIEEADLVLFVLDASQPLDKEDLALIE-LLPKKKPIIVVLNKADLVSKIEL------------------ 342 (454)
T ss_pred HHHHHHHHHHHHHHhCCEEEEEEeCCCCCchhhHHHHH-hcccCCCEEEEEechhccccccc------------------
Confidence 22 2467799999999999987777777766 55667899999999999743110
Q ss_pred HHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHHHH
Q 000728 946 NEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1004 (1326)
Q Consensus 946 ~e~~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~q 1004 (1326)
.. + .+....+++.+||+||+||+.|...|..++.
T Consensus 343 -------~~----~--------------~~~~~~~~i~iSa~t~~Gl~~L~~~i~~~~~ 376 (454)
T COG0486 343 -------ES----E--------------KLANGDAIISISAKTGEGLDALREAIKQLFG 376 (454)
T ss_pred -------ch----h--------------hccCCCceEEEEecCccCHHHHHHHHHHHHh
Confidence 00 0 0112347999999999999999998876654
No 253
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.44 E-value=2.5e-12 Score=139.66 Aligned_cols=177 Identities=19% Similarity=0.244 Sum_probs=103.2
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchh---
Q 000728 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT--- 871 (1326)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~--- 871 (1326)
+.|+|+|.+|+|||||+++|++...... +.++. +.+..+... ..+.. -..+.++||||||...+.
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~--~~~~~--~~~~~t~~~-----~~~~~---~~~~~l~l~DtpG~~~~~~~~ 69 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEEE--GAAPT--GVVETTMKR-----TPYPH---PKFPNVTLWDLPGIGSTAFPP 69 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCCCC--Ccccc--CccccccCc-----eeeec---CCCCCceEEeCCCCCcccCCH
Confidence 4699999999999999999997543221 10111 100000000 00000 012469999999975431
Q ss_pred --hhhhhccCccceeEEeeccccCCchhHHHHHHHHHhcCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHHHHH
Q 000728 872 --NLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 949 (1326)
Q Consensus 872 --~lr~rg~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~e~~ 949 (1326)
.+...++..+|++|||.+ .++......++..++..+.|+|||+||+|+.. ++.............+...+
T Consensus 70 ~~~l~~~~~~~~d~~l~v~~--~~~~~~d~~~~~~l~~~~~~~ilV~nK~D~~~-----~~~~~~~~~~~~~~~~l~~i- 141 (197)
T cd04104 70 DDYLEEMKFSEYDFFIIISS--TRFSSNDVKLAKAIQCMGKKFYFVRTKVDRDL-----SNEQRSKPRSFNREQVLQEI- 141 (197)
T ss_pred HHHHHHhCccCcCEEEEEeC--CCCCHHHHHHHHHHHHhCCCEEEEEecccchh-----hhhhccccccccHHHHHHHH-
Confidence 133345778899888854 45666667777888888999999999999842 11100000000000111111
Q ss_pred HHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCc--CCCChhhHHHHHHHHHHH
Q 000728 950 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAI--SGEGIPDLLLLLVQWTQK 1005 (1326)
Q Consensus 950 ~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~--tGeGI~eLl~~L~~~~q~ 1005 (1326)
...+...+...|+ ...+|+.+|+. .++|++.|.+.|+..++.
T Consensus 142 --~~~~~~~~~~~~~------------~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~ 185 (197)
T cd04104 142 --RDNCLENLQEAGV------------SEPPVFLVSNFDPSDYDFPKLRETLLKDLPA 185 (197)
T ss_pred --HHHHHHHHHHcCC------------CCCCEEEEeCCChhhcChHHHHHHHHHHhhH
Confidence 2233333433332 23589999998 789999999988877654
No 254
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.44 E-value=5.1e-13 Score=163.09 Aligned_cols=153 Identities=24% Similarity=0.335 Sum_probs=110.6
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchhhh-
Q 000728 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL- 873 (1326)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~~l- 873 (1326)
..|+++|++|+|||||+|+|++.+...|+.+|+|...-...+.+. ...|+|+|+||..+++..
T Consensus 4 ~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~----------------~~~i~ivDLPG~YSL~~~S 67 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYK----------------GHEIEIVDLPGTYSLTAYS 67 (653)
T ss_pred ceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEec----------------CceEEEEeCCCcCCCCCCC
Confidence 459999999999999999999999999999999988765555443 245999999997776433
Q ss_pred -----hhhcc--CccceeEEeeccccCCchhHHHHHHHHHhcCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHH
Q 000728 874 -----RSRGS--GLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQN 946 (1326)
Q Consensus 874 -----r~rg~--~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~ 946 (1326)
..+++ ..+|++|.|||+++ ++ .......++...++|+|+++|.+|....+ . +
T Consensus 68 ~DE~Var~~ll~~~~D~ivnVvDAtn-Le-RnLyltlQLlE~g~p~ilaLNm~D~A~~~----G--i------------- 126 (653)
T COG0370 68 EDEKVARDFLLEGKPDLIVNVVDATN-LE-RNLYLTLQLLELGIPMILALNMIDEAKKR----G--I------------- 126 (653)
T ss_pred chHHHHHHHHhcCCCCEEEEEcccch-HH-HHHHHHHHHHHcCCCeEEEeccHhhHHhc----C--C-------------
Confidence 11222 35799999999987 22 22333455678899999999999975210 0 0
Q ss_pred HHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHHHH
Q 000728 947 EFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1004 (1326)
Q Consensus 947 e~~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~q 1004 (1326)
......+... . .+|+||+||.+|.|+++|+..+....+
T Consensus 127 --~ID~~~L~~~---L---------------GvPVv~tvA~~g~G~~~l~~~i~~~~~ 164 (653)
T COG0370 127 --RIDIEKLSKL---L---------------GVPVVPTVAKRGEGLEELKRAIIELAE 164 (653)
T ss_pred --cccHHHHHHH---h---------------CCCEEEEEeecCCCHHHHHHHHHHhcc
Confidence 0001111111 1 279999999999999999999876543
No 255
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.44 E-value=7.8e-13 Score=132.54 Aligned_cols=157 Identities=21% Similarity=0.191 Sum_probs=107.5
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchhhhh
Q 000728 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1326)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~~lr 874 (1326)
..|+++|..|+|||.|+.++..+-++.|....|..++-.-.+..... .-.+.||||.|++.|..++
T Consensus 8 fkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~ge--------------kiklqiwdtagqerfrsit 73 (213)
T KOG0095|consen 8 FKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGE--------------KIKLQIWDTAGQERFRSIT 73 (213)
T ss_pred EEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCe--------------EEEEEEeeccchHHHHHHH
Confidence 35899999999999999999988887664333332221111211110 1249999999999999999
Q ss_pred hhccCccceeEEeeccccCCc----hhHHHHHHHHHhcCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHHHHHH
Q 000728 875 SRGSGLCDIAILVVDIMHGLE----PQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 950 (1326)
Q Consensus 875 ~rg~~~aDiaILVVDa~~Gv~----~QT~E~l~~l~~~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~e~~~ 950 (1326)
..+++.++.+|||+|++.... |.++.-|......++--|+|.||+|+... + . +
T Consensus 74 qsyyrsahalilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~dr---------r-e-------v------ 130 (213)
T KOG0095|consen 74 QSYYRSAHALILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADR---------R-E-------V------ 130 (213)
T ss_pred HHHhhhcceEEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhh---------h-h-------h------
Confidence 999999999999999988654 44444445555566778999999998521 0 0 0
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHHH
Q 000728 951 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1326)
Q Consensus 951 ~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1326)
..+|-..|+.. .+.-++.+||+...||+.||..|.-.+
T Consensus 131 -p~qigeefs~~--------------qdmyfletsakea~nve~lf~~~a~rl 168 (213)
T KOG0095|consen 131 -PQQIGEEFSEA--------------QDMYFLETSAKEADNVEKLFLDLACRL 168 (213)
T ss_pred -hHHHHHHHHHh--------------hhhhhhhhcccchhhHHHHHHHHHHHH
Confidence 11122222222 123467899999999999988775443
No 256
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.44 E-value=1.3e-12 Score=145.82 Aligned_cols=82 Identities=17% Similarity=0.153 Sum_probs=56.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcch-----
Q 000728 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF----- 870 (1326)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F----- 870 (1326)
.|+|+|++++|||||+++|.+.....+...+.|.+.....+.+ ....|++|||||+..+
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~----------------~~~~i~l~DtpG~~~~~~~~~ 65 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEY----------------KGAKIQLLDLPGIIEGAADGK 65 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEE----------------CCeEEEEEECCCcccccccch
Confidence 4899999999999999999987654444444443322222211 2235999999997543
Q ss_pred --hhhhhhccCccceeEEeeccccC
Q 000728 871 --TNLRSRGSGLCDIAILVVDIMHG 893 (1326)
Q Consensus 871 --~~lr~rg~~~aDiaILVVDa~~G 893 (1326)
...+...++.+|++|+|+|+++.
T Consensus 66 ~~~~~~l~~~~~ad~il~V~D~t~~ 90 (233)
T cd01896 66 GRGRQVIAVARTADLILMVLDATKP 90 (233)
T ss_pred hHHHHHHHhhccCCEEEEEecCCcc
Confidence 23445678899999999998653
No 257
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.43 E-value=7.8e-13 Score=133.07 Aligned_cols=154 Identities=22% Similarity=0.264 Sum_probs=108.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchhhhhh
Q 000728 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1326)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~~lr~ 875 (1326)
.++|+|+.|+|||.||.++....+.......|...+|.-.+.... +...+.||||.|++.|.....
T Consensus 11 Kfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGg--------------K~vKLQIWDTAGQErFRSVtR 76 (214)
T KOG0086|consen 11 KFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGG--------------KTVKLQIWDTAGQERFRSVTR 76 (214)
T ss_pred eeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecC--------------cEEEEEEeecccHHHHHHHHH
Confidence 489999999999999999998777665544555555544443322 123499999999999999999
Q ss_pred hccCccceeEEeeccccCCchhHHHHH----HHHHhcCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000728 876 RGSGLCDIAILVVDIMHGLEPQTIESL----NLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1326)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E~l----~~l~~~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~e~~~~ 951 (1326)
.+++.+-+++||+|++..-....+..| +.|...++-+|+|.||-|+... +...|
T Consensus 77 sYYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~----R~Vtf------------------ 134 (214)
T KOG0086|consen 77 SYYRGAAGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPE----REVTF------------------ 134 (214)
T ss_pred HHhccccceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChh----hhhhH------------------
Confidence 999999999999999875544444333 3444457778999999998521 11111
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHH
Q 000728 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1001 (1326)
Q Consensus 952 l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~ 1001 (1326)
.... .|.+ + ..+.+..+||+||+||.+.|-.+..
T Consensus 135 -lEAs-~Faq-----E---------nel~flETSa~TGeNVEEaFl~c~~ 168 (214)
T KOG0086|consen 135 -LEAS-RFAQ-----E---------NELMFLETSALTGENVEEAFLKCAR 168 (214)
T ss_pred -HHHH-hhhc-----c---------cceeeeeecccccccHHHHHHHHHH
Confidence 0000 1111 1 2357899999999999998876654
No 258
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.41 E-value=5.5e-13 Score=139.83 Aligned_cols=156 Identities=25% Similarity=0.246 Sum_probs=110.8
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchhhhh
Q 000728 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1326)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~~lr 874 (1326)
..|+++|-.++||||+|.+|....+... .++||... +. +.|++..+++||..|+..++.+|
T Consensus 18 ~~IlmlGLD~AGKTTILykLk~~E~vtt-----vPTiGfnV---E~-----------v~ykn~~f~vWDvGGq~k~R~lW 78 (181)
T KOG0070|consen 18 MRILMVGLDAAGKTTILYKLKLGEIVTT-----VPTIGFNV---ET-----------VEYKNISFTVWDVGGQEKLRPLW 78 (181)
T ss_pred EEEEEEeccCCCceeeeEeeccCCcccC-----CCccccce---eE-----------EEEcceEEEEEecCCCcccccch
Confidence 3499999999999999999986655432 22223211 11 12334569999999999999999
Q ss_pred hhccCccceeEEeeccccCCc-hhHHHHH-HHHHh---cCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHHHHH
Q 000728 875 SRGSGLCDIAILVVDIMHGLE-PQTIESL-NLLKM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 949 (1326)
Q Consensus 875 ~rg~~~aDiaILVVDa~~Gv~-~QT~E~l-~~l~~---~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~e~~ 949 (1326)
..|+..++++|||||+++... +...+.| +++.. .++|++|+.||.|+.+..
T Consensus 79 ~~Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~al------------------------ 134 (181)
T KOG0070|consen 79 KHYFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGAL------------------------ 134 (181)
T ss_pred hhhccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccC------------------------
Confidence 999999999999999987432 2233333 33332 368999999999997431
Q ss_pred HHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHHHH
Q 000728 950 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1004 (1326)
Q Consensus 950 ~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~q 1004 (1326)
....|...|..+.+.. ....+..++|.+|+|+.+-++||...+.
T Consensus 135 -s~~ei~~~L~l~~l~~----------~~w~iq~~~a~~G~GL~egl~wl~~~~~ 178 (181)
T KOG0070|consen 135 -SAAEITNKLGLHSLRS----------RNWHIQSTCAISGEGLYEGLDWLSNNLK 178 (181)
T ss_pred -CHHHHHhHhhhhccCC----------CCcEEeeccccccccHHHHHHHHHHHHh
Confidence 1234455555444432 4468899999999999999999876554
No 259
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.40 E-value=5.6e-12 Score=139.93 Aligned_cols=123 Identities=20% Similarity=0.275 Sum_probs=84.1
Q ss_pred CCCcCCCCcccccCCCCCEEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCC
Q 000728 778 EPEVDATPKQAEENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVP 857 (1326)
Q Consensus 778 ~~~~~~~~~~~~~~~R~piV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~ 857 (1326)
++.......+.+....+.+|+|+|++|+|||||++.|++..... .+....|.+++.. ....
T Consensus 23 k~~~~~~~~r~~~~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~----~~~~~~g~i~i~~---------------~~~~ 83 (225)
T cd01882 23 KKLHVPVVDRTPEEPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQ----NISDIKGPITVVT---------------GKKR 83 (225)
T ss_pred ccccceeeccccccCCCCEEEEECCCCCCHHHHHHHHHhhcccC----ccccccccEEEEe---------------cCCc
Confidence 33333333444444556679999999999999999998542110 0111111111100 1124
Q ss_pred CEEEEeCCCCcchhhhhhhccCccceeEEeeccccCCchhHHHHHHHHHhcCCcEE-EEEeccccc
Q 000728 858 GLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFI-VALNKVDRL 922 (1326)
Q Consensus 858 ~I~IIDTPGhe~F~~lr~rg~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~vP~I-VvINKiD~~ 922 (1326)
.|+|+||||+. ......+..+|++|||+|+..++..++..+|..+...++|.+ +|+||+|++
T Consensus 84 ~i~~vDtPg~~---~~~l~~ak~aDvVllviDa~~~~~~~~~~i~~~l~~~g~p~vi~VvnK~D~~ 146 (225)
T cd01882 84 RLTFIECPNDI---NAMIDIAKVADLVLLLIDASFGFEMETFEFLNILQVHGFPRVMGVLTHLDLF 146 (225)
T ss_pred eEEEEeCCchH---HHHHHHHHhcCEEEEEEecCcCCCHHHHHHHHHHHHcCCCeEEEEEeccccC
Confidence 59999999974 223345688999999999999999999999999988899955 499999986
No 260
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.40 E-value=3e-12 Score=140.00 Aligned_cols=115 Identities=23% Similarity=0.214 Sum_probs=85.2
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchhhhh
Q 000728 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1326)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~~lr 874 (1326)
..|+|+|..|+|||||+++|.+..+..+...+++..+.......... ...+.+|||+|+..|..++
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~--------------~~~~~~~Dt~gq~~~~~~~ 71 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRR--------------NIKLQLWDTAGQEEYRSLR 71 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCC--------------EEEEEeecCCCHHHHHHHH
Confidence 56999999999999999999998887665555544443332221100 1238999999999999999
Q ss_pred hhccCccceeEEeecccc--CCchhHHHHHHHHHhc---CCcEEEEEecccccc
Q 000728 875 SRGSGLCDIAILVVDIMH--GLEPQTIESLNLLKMR---NTEFIVALNKVDRLY 923 (1326)
Q Consensus 875 ~rg~~~aDiaILVVDa~~--Gv~~QT~E~l~~l~~~---~vP~IVvINKiD~~~ 923 (1326)
..++..++++|+|+|... ....-+..++..+... ..|+|++.||+|+..
T Consensus 72 ~~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~ 125 (219)
T COG1100 72 PEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFD 125 (219)
T ss_pred HHHhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCCCCceEEEEeccccccc
Confidence 999999999999999986 2223333333344443 589999999999974
No 261
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.39 E-value=8.8e-13 Score=133.46 Aligned_cols=157 Identities=21% Similarity=0.160 Sum_probs=104.5
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchhhh
Q 000728 794 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL 873 (1326)
Q Consensus 794 ~piV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~~l 873 (1326)
++.|+++|..-+|||||+-++....+....... +.+.|... .++.. -....+.||||.|++.|..+
T Consensus 13 ~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsT----lQASF~~k--------k~n~e--d~ra~L~IWDTAGQErfHAL 78 (218)
T KOG0088|consen 13 KFKIVLLGEGCVGKTSLVLRYVENKFNCKHLST----LQASFQNK--------KVNVE--DCRADLHIWDTAGQERFHAL 78 (218)
T ss_pred eeEEEEEcCCccchhHHHHHHHHhhcchhhHHH----HHHHHhhc--------ccccc--cceeeeeeeeccchHhhhcc
Confidence 456999999999999999999876654322111 11111110 00000 01235999999999999999
Q ss_pred hhhccCccceeEEeeccccCCchhHHHHH-HHHH---hcCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHHHHH
Q 000728 874 RSRGSGLCDIAILVVDIMHGLEPQTIESL-NLLK---MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 949 (1326)
Q Consensus 874 r~rg~~~aDiaILVVDa~~Gv~~QT~E~l-~~l~---~~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~e~~ 949 (1326)
-..|++.+|++|||+|+++.-..|-...| ..|+ -..+-++||.||||+... +.
T Consensus 79 GPIYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEee----R~------------------- 135 (218)
T KOG0088|consen 79 GPIYYRGSNGALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEE----RQ------------------- 135 (218)
T ss_pred CceEEeCCCceEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHh----hh-------------------
Confidence 99999999999999999998777766655 3333 334789999999998510 00
Q ss_pred HHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHH
Q 000728 950 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1326)
Q Consensus 950 ~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~ 1002 (1326)
.............| ..++.+||+.+.||.+||..|...
T Consensus 136 Vt~qeAe~YAesvG---------------A~y~eTSAk~N~Gi~elFe~Lt~~ 173 (218)
T KOG0088|consen 136 VTRQEAEAYAESVG---------------ALYMETSAKDNVGISELFESLTAK 173 (218)
T ss_pred hhHHHHHHHHHhhc---------------hhheecccccccCHHHHHHHHHHH
Confidence 00011111111111 367899999999999999988654
No 262
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.39 E-value=1.7e-12 Score=128.55 Aligned_cols=106 Identities=24% Similarity=0.336 Sum_probs=76.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCcc-cccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcc-----
Q 000728 796 ICCIMGHVDTGKTKLLDCIRGTNV-QEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES----- 869 (1326)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~~~v-~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~----- 869 (1326)
.|+|+|.+|+|||||+++|++.+. ..+...+.|++.....+.+. ...+.|+||||...
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~----------------~~~~~~vDtpG~~~~~~~~ 64 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYN----------------NKKFILVDTPGINDGESQD 64 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEET----------------TEEEEEEESSSCSSSSHHH
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeec----------------eeeEEEEeCCCCcccchhh
Confidence 389999999999999999998643 34455566666522222221 23478999999643
Q ss_pred ----hhhhhhhccCccceeEEeeccccCCchhHHHHHHHHHhcCCcEEEEEec
Q 000728 870 ----FTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNK 918 (1326)
Q Consensus 870 ----F~~lr~rg~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~vP~IVvINK 918 (1326)
+.....+.+..+|++|||||+.+....+....++.++ .+.|+|+|+||
T Consensus 65 ~~~~~~~~~~~~~~~~d~ii~vv~~~~~~~~~~~~~~~~l~-~~~~~i~v~NK 116 (116)
T PF01926_consen 65 NDGKEIRKFLEQISKSDLIIYVVDASNPITEDDKNILRELK-NKKPIILVLNK 116 (116)
T ss_dssp HHHHHHHHHHHHHCTESEEEEEEETTSHSHHHHHHHHHHHH-TTSEEEEEEES
T ss_pred HHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHh-cCCCEEEEEcC
Confidence 1223444558899999999988855555667777776 88999999998
No 263
>PRK09866 hypothetical protein; Provisional
Probab=99.37 E-value=7e-12 Score=152.38 Aligned_cols=114 Identities=18% Similarity=0.150 Sum_probs=81.0
Q ss_pred CCEEEEeCCCCcc-----hhhhhhhccCccceeEEeeccccCCchhHHHHHHHHHhcC--CcEEEEEeccccccCcccCC
Q 000728 857 PGLLVIDTPGHES-----FTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRN--TEFIVALNKVDRLYGWKTCR 929 (1326)
Q Consensus 857 ~~I~IIDTPGhe~-----F~~lr~rg~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~--vP~IVvINKiD~~~~w~~~~ 929 (1326)
..|+||||||... +..++...+..+|++|||||+..++.+.....+..++..+ .|+|+|+||+|+...
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~~K~~PVILVVNKIDl~dr----- 304 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDEEVREAILAVGQSVPLYVLVNKFDQQDR----- 304 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHHHHHHHHHhcCCCCCEEEEEEcccCCCc-----
Confidence 4699999999432 3445566899999999999999988888888888888877 599999999998521
Q ss_pred CchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHH
Q 000728 930 NAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1001 (1326)
Q Consensus 930 ~a~~~~~L~~q~~~~~~e~~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~ 1001 (1326)
..+....+ ...+...|...++ ....||||||++|.|+..|+..|..
T Consensus 305 eeddkE~L--------------le~V~~~L~q~~i------------~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 305 NSDDADQV--------------RALISGTLMKGCI------------TPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred ccchHHHH--------------HHHHHHHHHhcCC------------CCceEEEEeCCCCCCHHHHHHHHHh
Confidence 11111111 0111112222221 2357999999999999999998875
No 264
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.36 E-value=3.3e-12 Score=139.52 Aligned_cols=118 Identities=17% Similarity=0.122 Sum_probs=82.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchhhhhh
Q 000728 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1326)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~~lr~ 875 (1326)
.|+|+|..++|||||+.+|....+.....+++..++....+.+.... ..-....|.||||+|++.|..++.
T Consensus 2 KIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~---------~~~~~~~l~IwDtaG~e~~~~l~~ 72 (202)
T cd04102 2 RVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGT---------PEEKTFFVELWDVGGSESVKSTRA 72 (202)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCC---------CCCcEEEEEEEecCCchhHHHHHH
Confidence 58999999999999999999887765443333322221112111000 000112489999999999999999
Q ss_pred hccCccceeEEeeccccCCchhHHHHH-HHHHh----------------------cCCcEEEEEeccccc
Q 000728 876 RGSGLCDIAILVVDIMHGLEPQTIESL-NLLKM----------------------RNTEFIVALNKVDRL 922 (1326)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E~l-~~l~~----------------------~~vP~IVvINKiD~~ 922 (1326)
.+++.+|++|||+|.++.-..+.+..| ..+.. .++|+|||.||+|+.
T Consensus 73 ~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~ 142 (202)
T cd04102 73 VFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQI 142 (202)
T ss_pred HHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccch
Confidence 999999999999999986555444444 22221 368999999999986
No 265
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.35 E-value=1.9e-12 Score=130.02 Aligned_cols=154 Identities=17% Similarity=0.173 Sum_probs=107.5
Q ss_pred EEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchhhhhhh
Q 000728 797 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSR 876 (1326)
Q Consensus 797 V~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~~lr~r 876 (1326)
++++|..++|||||++.+..+.+... +..+.|+....+.. .+..|.+||.||+..|..||.+
T Consensus 23 l~lvGLq~sGKtt~Vn~ia~g~~~ed----miptvGfnmrk~tk--------------gnvtiklwD~gGq~rfrsmWer 84 (186)
T KOG0075|consen 23 LSLVGLQNSGKTTLVNVIARGQYLED----MIPTVGFNMRKVTK--------------GNVTIKLWDLGGQPRFRSMWER 84 (186)
T ss_pred EEEEeeccCCcceEEEEEeeccchhh----hcccccceeEEecc--------------CceEEEEEecCCCccHHHHHHH
Confidence 79999999999999998876544322 23334443332211 1124899999999999999999
Q ss_pred ccCccceeEEeeccccCC-chhHHHHHHHHH----hcCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000728 877 GSGLCDIAILVVDIMHGL-EPQTIESLNLLK----MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1326)
Q Consensus 877 g~~~aDiaILVVDa~~Gv-~~QT~E~l~~l~----~~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~e~~~~ 951 (1326)
+++.|+++|+|||+.+.- -+..++-|..|. -.++|++|..||+|+.... .
T Consensus 85 ycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL------------~------------- 139 (186)
T KOG0075|consen 85 YCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGAL------------S------------- 139 (186)
T ss_pred HhhcCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccc------------c-------------
Confidence 999999999999998732 122333333332 2379999999999997421 0
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHHH
Q 000728 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1326)
Q Consensus 952 l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1326)
-...+...|+..- ..+.+.++.||++...||+-+++||+.+.
T Consensus 140 ---~~~li~rmgL~si-------tdREvcC~siScke~~Nid~~~~Wli~hs 181 (186)
T KOG0075|consen 140 ---KIALIERMGLSSI-------TDREVCCFSISCKEKVNIDITLDWLIEHS 181 (186)
T ss_pred ---HHHHHHHhCcccc-------ccceEEEEEEEEcCCccHHHHHHHHHHHh
Confidence 0112333454321 13568999999999999999999998764
No 266
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.33 E-value=2.9e-12 Score=132.36 Aligned_cols=162 Identities=21% Similarity=0.202 Sum_probs=106.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCcc-cccc--cCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchhh
Q 000728 796 ICCIMGHVDTGKTKLLDCIRGTNV-QEGE--AGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 872 (1326)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~~~v-~~ge--~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~~ 872 (1326)
.|.|+|..++||||||.++-..-. .-+. ..-||...|...-. ..+.+..+.|||..|++...+
T Consensus 19 ~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~--------------i~v~~~~l~fwdlgGQe~lrS 84 (197)
T KOG0076|consen 19 SVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGT--------------IEVCNAPLSFWDLGGQESLRS 84 (197)
T ss_pred hheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecc--------------eeeccceeEEEEcCChHHHHH
Confidence 389999999999999999863221 0010 11233333321111 111234599999999999999
Q ss_pred hhhhccCccceeEEeeccccCCc-----hhHHHHHHHHHhcCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHHH
Q 000728 873 LRSRGSGLCDIAILVVDIMHGLE-----PQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNE 947 (1326)
Q Consensus 873 lr~rg~~~aDiaILVVDa~~Gv~-----~QT~E~l~~l~~~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~e 947 (1326)
+|..++..|+++|+|||+.+.-. .+-...+.+-...++|+++.+||.|+... -
T Consensus 85 lw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~-------~--------------- 142 (197)
T KOG0076|consen 85 LWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNA-------M--------------- 142 (197)
T ss_pred HHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhh-------h---------------
Confidence 99999999999999999988321 11223334445568999999999998521 0
Q ss_pred HHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHHHHH
Q 000728 948 FNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQK 1005 (1326)
Q Consensus 948 ~~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~q~ 1005 (1326)
....|...|....+ +..+++++.||||++|+||.+-+.|++..+..
T Consensus 143 ---~~~El~~~~~~~e~---------~~~rd~~~~pvSal~gegv~egi~w~v~~~~k 188 (197)
T KOG0076|consen 143 ---EAAELDGVFGLAEL---------IPRRDNPFQPVSALTGEGVKEGIEWLVKKLEK 188 (197)
T ss_pred ---hHHHHHHHhhhhhh---------cCCccCccccchhhhcccHHHHHHHHHHHHhh
Confidence 01122222211111 12367899999999999999999998866543
No 267
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.33 E-value=1.1e-11 Score=140.10 Aligned_cols=157 Identities=22% Similarity=0.215 Sum_probs=100.6
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcch--
Q 000728 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF-- 870 (1326)
Q Consensus 793 R~piV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F-- 870 (1326)
-.|.|+|+|++|+|||||+.+|++.......++.+|-+|...+|..... .+++|||||.-+-
T Consensus 167 ~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~~----------------R~QvIDTPGlLDRPl 230 (346)
T COG1084 167 DLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGYL----------------RIQVIDTPGLLDRPL 230 (346)
T ss_pred CCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCCc----------------eEEEecCCcccCCCh
Confidence 3455999999999999999999988876666666665554444443332 4999999995442
Q ss_pred h--hh----hhhcc-CccceeEEeecccc--CCchhHHHH-HHHHHh-cCCcEEEEEeccccccCcccCCCchHHHHHHH
Q 000728 871 T--NL----RSRGS-GLCDIAILVVDIMH--GLEPQTIES-LNLLKM-RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQ 939 (1326)
Q Consensus 871 ~--~l----r~rg~-~~aDiaILVVDa~~--Gv~~QT~E~-l~~l~~-~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~ 939 (1326)
. |. ...++ .+.+++||++|.+. |.......+ |..++. .+.|+|+|+||+|..+-
T Consensus 231 ~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~~p~v~V~nK~D~~~~--------------- 295 (346)
T COG1084 231 EERNEIERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFKAPIVVVINKIDIADE--------------- 295 (346)
T ss_pred HHhcHHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcCCCeEEEEecccccch---------------
Confidence 1 11 11122 35788999999864 544333222 233332 35799999999998632
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHHHH
Q 000728 940 QNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1004 (1326)
Q Consensus 940 q~~~~~~e~~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~q 1004 (1326)
..+..+...+...|. ...+.+|+..+.+++.+...+.....
T Consensus 296 ----------e~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~d~~~~~v~~~a~ 336 (346)
T COG1084 296 ----------EKLEEIEASVLEEGG--------------EEPLKISATKGCGLDKLREEVRKTAL 336 (346)
T ss_pred ----------hHHHHHHHHHHhhcc--------------ccccceeeeehhhHHHHHHHHHHHhh
Confidence 123333333444332 23566788888988877776665433
No 268
>PLN00023 GTP-binding protein; Provisional
Probab=99.33 E-value=5e-12 Score=145.38 Aligned_cols=131 Identities=17% Similarity=0.166 Sum_probs=83.9
Q ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcch
Q 000728 791 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF 870 (1326)
Q Consensus 791 ~~R~piV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F 870 (1326)
......|+|||+.++||||||.+|....+......+|..++....+.+.........+... .-....|.||||+|++.|
T Consensus 18 ~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d-~~k~v~LqIWDTAGqErf 96 (334)
T PLN00023 18 PCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGD-SERDFFVELWDVSGHERY 96 (334)
T ss_pred CccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCccccccccccc-CCceEEEEEEECCCChhh
Confidence 4555679999999999999999999876654433333332221212211100000000000 001124899999999999
Q ss_pred hhhhhhccCccceeEEeeccccCCchhHHHHH-HHHHhc---------------CCcEEEEEeccccc
Q 000728 871 TNLRSRGSGLCDIAILVVDIMHGLEPQTIESL-NLLKMR---------------NTEFIVALNKVDRL 922 (1326)
Q Consensus 871 ~~lr~rg~~~aDiaILVVDa~~Gv~~QT~E~l-~~l~~~---------------~vP~IVvINKiD~~ 922 (1326)
..++..+++.+|++|||+|+++.-....+..| ..+... ++|+|||.||+|+.
T Consensus 97 rsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~ 164 (334)
T PLN00023 97 KDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIA 164 (334)
T ss_pred hhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccc
Confidence 99999999999999999999874433333322 233321 48999999999985
No 269
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.33 E-value=7.1e-12 Score=138.79 Aligned_cols=175 Identities=15% Similarity=0.201 Sum_probs=115.7
Q ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcc-
Q 000728 791 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES- 869 (1326)
Q Consensus 791 ~~R~piV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~- 869 (1326)
...+.+|.|||.+|+|||||+|+|..+++..-. ++|+..-+.... ...+....++||||||..+
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~------~vg~~t~~~~~~---------~~~~~~~~l~lwDtPG~gdg 100 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVS------KVGVGTDITTRL---------RLSYDGENLVLWDTPGLGDG 100 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCceee------ecccCCCchhhH---------HhhccccceEEecCCCcccc
Confidence 345556779999999999999999977654322 222222111110 0112335699999999776
Q ss_pred ------hhhhhhhccCccceeEEeeccccCCchhHHHHHHHHHh--cCCcEEEEEeccccc---cCcccCCCchHHHHHH
Q 000728 870 ------FTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKM--RNTEFIVALNKVDRL---YGWKTCRNAPIVKAIK 938 (1326)
Q Consensus 870 ------F~~lr~rg~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~--~~vP~IVvINKiD~~---~~w~~~~~a~~~~~L~ 938 (1326)
+..+..-++...|++++++++.+..-.....+|+.+.. .+.|+|++||.+|+. ++|....+.+..
T Consensus 101 ~~~D~~~r~~~~d~l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~---- 176 (296)
T COG3596 101 KDKDAEHRQLYRDYLPKLDLVLWLIKADDRALGTDEDFLRDVIILGLDKRVLFVVTQADRAEPGREWDSAGHQPSP---- 176 (296)
T ss_pred hhhhHHHHHHHHHHhhhccEEEEeccCCCccccCCHHHHHHHHHhccCceeEEEEehhhhhccccccccccCCCCH----
Confidence 67777778889999999999998766666667765544 347999999999974 456643332211
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHHHH
Q 000728 939 QQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1004 (1326)
Q Consensus 939 ~q~~~~~~e~~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~q 1004 (1326)
.+.+.+..+.+.+...+. ..-|+|.+|+.+++|+..|+..|+..++
T Consensus 177 ----a~~qfi~~k~~~~~~~~q----------------~V~pV~~~~~r~~wgl~~l~~ali~~lp 222 (296)
T COG3596 177 ----AIKQFIEEKAEALGRLFQ----------------EVKPVVAVSGRLPWGLKELVRALITALP 222 (296)
T ss_pred ----HHHHHHHHHHHHHHHHHh----------------hcCCeEEeccccCccHHHHHHHHHHhCc
Confidence 112222233333333332 1348999999999999999999887665
No 270
>COG2262 HflX GTPases [General function prediction only]
Probab=99.28 E-value=1.7e-11 Score=142.47 Aligned_cols=153 Identities=25% Similarity=0.303 Sum_probs=98.6
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccC-CCCEEEEeCCCCcc--
Q 000728 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLK-VPGLLVIDTPGHES-- 869 (1326)
Q Consensus 793 R~piV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~-~~~I~IIDTPGhe~-- 869 (1326)
.-|.|+++|.+|+|||||+|+|++..+.... ++.++..|+.. ...+. +..++|-||-|+.+
T Consensus 191 ~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d------~LFATLdpttR----------~~~l~~g~~vlLtDTVGFI~~L 254 (411)
T COG2262 191 GIPLVALVGYTNAGKSTLFNALTGADVYVAD------QLFATLDPTTR----------RIELGDGRKVLLTDTVGFIRDL 254 (411)
T ss_pred CCCeEEEEeeccccHHHHHHHHhccCeeccc------cccccccCcee----------EEEeCCCceEEEecCccCcccC
Confidence 3467999999999999999999976654322 23333333211 01111 34699999999543
Q ss_pred -------hhhhhhhccCccceeEEeeccccCCch-hHHHHHHHHHh---cCCcEEEEEeccccccCcccCCCchHHHHHH
Q 000728 870 -------FTNLRSRGSGLCDIAILVVDIMHGLEP-QTIESLNLLKM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIK 938 (1326)
Q Consensus 870 -------F~~lr~rg~~~aDiaILVVDa~~Gv~~-QT~E~l~~l~~---~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~ 938 (1326)
|..... -...+|++|+|||+++..-. +-..+...|.. ..+|+|+|+||+|++.+ ..
T Consensus 255 P~~LV~AFksTLE-E~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~------~~------ 321 (411)
T COG2262 255 PHPLVEAFKSTLE-EVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLED------EE------ 321 (411)
T ss_pred ChHHHHHHHHHHH-HhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCc------hh------
Confidence 433333 45679999999999986322 22223344444 45799999999998732 00
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHHHHH
Q 000728 939 QQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQK 1005 (1326)
Q Consensus 939 ~q~~~~~~e~~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~q~ 1005 (1326)
+...+.. .....|++||++|.||+.|+..|...++.
T Consensus 322 ----------------~~~~~~~---------------~~~~~v~iSA~~~~gl~~L~~~i~~~l~~ 357 (411)
T COG2262 322 ----------------ILAELER---------------GSPNPVFISAKTGEGLDLLRERIIELLSG 357 (411)
T ss_pred ----------------hhhhhhh---------------cCCCeEEEEeccCcCHHHHHHHHHHHhhh
Confidence 0001100 01158999999999999999988876653
No 271
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.27 E-value=5.8e-11 Score=128.73 Aligned_cols=111 Identities=22% Similarity=0.178 Sum_probs=79.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCcccccc--cCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchhh-
Q 000728 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGE--AGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN- 872 (1326)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~~~v~~ge--~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~~- 872 (1326)
.|+|+|++|+|||||+|.|++..+.... ..+.|.++..+...+ ....|+||||||..++..
T Consensus 2 ~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~----------------~~~~i~viDTPG~~d~~~~ 65 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVW----------------DGRRVNVIDTPGLFDTSVS 65 (196)
T ss_pred EEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEE----------------CCeEEEEEECcCCCCccCC
Confidence 4999999999999999999987654322 345666554333322 224599999999765421
Q ss_pred ------hh----hhccCccceeEEeeccccCCchhHHHHHHHHHhc-C----CcEEEEEecccccc
Q 000728 873 ------LR----SRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMR-N----TEFIVALNKVDRLY 923 (1326)
Q Consensus 873 ------lr----~rg~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~-~----vP~IVvINKiD~~~ 923 (1326)
.. ......+|++|||+++.+ +.......+..++.. + .++||++|++|.+.
T Consensus 66 ~~~~~~~i~~~~~~~~~g~~~illVi~~~~-~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~ 130 (196)
T cd01852 66 PEQLSKEIVRCLSLSAPGPHAFLLVVPLGR-FTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLE 130 (196)
T ss_pred hHHHHHHHHHHHHhcCCCCEEEEEEEECCC-cCHHHHHHHHHHHHHhChHhHhcEEEEEECccccC
Confidence 11 123466899999999988 777777777777653 2 58999999999863
No 272
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.26 E-value=8.6e-12 Score=123.23 Aligned_cols=109 Identities=23% Similarity=0.257 Sum_probs=70.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCccc----ccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchh
Q 000728 796 ICCIMGHVDTGKTKLLDCIRGTNVQ----EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 871 (1326)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~~~v~----~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~ 871 (1326)
.|+|+|+.|+||||||++|++.... .....+.+..+....+.... ..+.|||++|+..|.
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~d~~g~~~~~ 64 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDR----------------QSLQFWDFGGQEEFY 64 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEE----------------EEEEEEEESSSHCHH
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCc----------------eEEEEEecCccceec
Confidence 4899999999999999999987655 11122222222222221111 128999999999888
Q ss_pred hhhhhccCccceeEEeeccccCCchhH-HH---HHHHHHh--cCCcEEEEEeccc
Q 000728 872 NLRSRGSGLCDIAILVVDIMHGLEPQT-IE---SLNLLKM--RNTEFIVALNKVD 920 (1326)
Q Consensus 872 ~lr~rg~~~aDiaILVVDa~~Gv~~QT-~E---~l~~l~~--~~vP~IVvINKiD 920 (1326)
..+...+..+|++|||+|+++....+- .. .|..+.. .++|+|||.||.|
T Consensus 65 ~~~~~~~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 65 SQHQFFLKKADAVILVYDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp CTSHHHHHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred ccccchhhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 876666889999999999987432211 11 1222322 3599999999998
No 273
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.26 E-value=3e-11 Score=135.42 Aligned_cols=148 Identities=23% Similarity=0.304 Sum_probs=94.7
Q ss_pred EEEEeCCCCCHHHHHHHHHcCcc--cccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcch----
Q 000728 797 CCIMGHVDTGKTKLLDCIRGTNV--QEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF---- 870 (1326)
Q Consensus 797 V~IlGhvdaGKTTLLd~L~~~~v--~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F---- 870 (1326)
|+++|.+++||||||++|....- ..+.+.++..+||.+++..- ..|++-|.||...=
T Consensus 199 vGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf-----------------~q~tVADiPGiI~GAh~n 261 (366)
T KOG1489|consen 199 VGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDF-----------------SQITVADIPGIIEGAHMN 261 (366)
T ss_pred cceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeecccc-----------------ceeEeccCcccccccccc
Confidence 88999999999999999987653 34444445566774333211 13999999994321
Q ss_pred ---hhhhhhccCccceeEEeeccccCC---chhHHHH-HHHHHh-----cCCcEEEEEeccccccCcccCCCchHHHHHH
Q 000728 871 ---TNLRSRGSGLCDIAILVVDIMHGL---EPQTIES-LNLLKM-----RNTEFIVALNKVDRLYGWKTCRNAPIVKAIK 938 (1326)
Q Consensus 871 ---~~lr~rg~~~aDiaILVVDa~~Gv---~~QT~E~-l~~l~~-----~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~ 938 (1326)
.....+.+..|++++||||++.+. .-+++.. |..|.. ...|.+||+||||++.+ ..
T Consensus 262 kGlG~~FLrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~ea-----e~------- 329 (366)
T KOG1489|consen 262 KGLGYKFLRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEA-----EK------- 329 (366)
T ss_pred CcccHHHHHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhH-----HH-------
Confidence 222345566799999999998862 2222222 222322 25699999999998511 00
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHH
Q 000728 939 QQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1001 (1326)
Q Consensus 939 ~q~~~~~~e~~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~ 1001 (1326)
. .+..+...| ....|||+||++|+|+..|+..|-.
T Consensus 330 --------~---~l~~L~~~l-----------------q~~~V~pvsA~~~egl~~ll~~lr~ 364 (366)
T KOG1489|consen 330 --------N---LLSSLAKRL-----------------QNPHVVPVSAKSGEGLEELLNGLRE 364 (366)
T ss_pred --------H---HHHHHHHHc-----------------CCCcEEEeeeccccchHHHHHHHhh
Confidence 0 112221111 1236999999999999999887643
No 274
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.26 E-value=1.7e-11 Score=133.34 Aligned_cols=160 Identities=19% Similarity=0.121 Sum_probs=108.5
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchhh
Q 000728 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 872 (1326)
Q Consensus 793 R~piV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~~ 872 (1326)
+...|+++|..|+|||+|+-+++...+.....+.|- +...-.+... -....+.|+||+|...|..
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v~--------------~~~~~l~ilDt~g~~~~~~ 66 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTVD--------------GEVCMLEILDTAGQEEFSA 66 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCcc-ccceEEEEEC--------------CEEEEEEEEcCCCcccChH
Confidence 556799999999999999999998877655444332 1111111111 0112488999999999999
Q ss_pred hhhhccCccceeEEeeccccCCchhHHHHHH-HH-H---hcCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHHH
Q 000728 873 LRSRGSGLCDIAILVVDIMHGLEPQTIESLN-LL-K---MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNE 947 (1326)
Q Consensus 873 lr~rg~~~aDiaILVVDa~~Gv~~QT~E~l~-~l-~---~~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~e 947 (1326)
|+..++...|+.|||+++++.-..+....|. ++ + ...+|+|+|+||+|+... +....
T Consensus 67 ~~~~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~----R~V~~-------------- 128 (196)
T KOG0395|consen 67 MRDLYIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERE----RQVSE-------------- 128 (196)
T ss_pred HHHHhhccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhc----cccCH--------------
Confidence 9999999999999999999865544443332 22 1 235799999999999621 00000
Q ss_pred HHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHHHHH
Q 000728 948 FNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQK 1005 (1326)
Q Consensus 948 ~~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~q~ 1005 (1326)
.... .| ... ..++++.+||....+|.++|..|+..+..
T Consensus 129 -----eeg~-~l-------a~~-------~~~~f~E~Sak~~~~v~~~F~~L~r~~~~ 166 (196)
T KOG0395|consen 129 -----EEGK-AL-------ARS-------WGCAFIETSAKLNYNVDEVFYELVREIRL 166 (196)
T ss_pred -----HHHH-HH-------HHh-------cCCcEEEeeccCCcCHHHHHHHHHHHHHh
Confidence 0000 11 111 13679999999999999999999876553
No 275
>PRK13768 GTPase; Provisional
Probab=99.25 E-value=3.7e-11 Score=135.70 Aligned_cols=127 Identities=22% Similarity=0.314 Sum_probs=77.8
Q ss_pred CCEEEEeCCCCcchhh---hhh---hccCc--cceeEEeeccccCCchhHHHHHHHHH-----hcCCcEEEEEecccccc
Q 000728 857 PGLLVIDTPGHESFTN---LRS---RGSGL--CDIAILVVDIMHGLEPQTIESLNLLK-----MRNTEFIVALNKVDRLY 923 (1326)
Q Consensus 857 ~~I~IIDTPGhe~F~~---lr~---rg~~~--aDiaILVVDa~~Gv~~QT~E~l~~l~-----~~~vP~IVvINKiD~~~ 923 (1326)
..+.||||||+..+.. ++. +.+.. ++++|+|||+.++..+.+.....++. ..++|+|+|+||+|+..
T Consensus 97 ~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~~ 176 (253)
T PRK13768 97 ADYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLLS 176 (253)
T ss_pred CCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhcC
Confidence 4699999999766432 221 11222 89999999999988887766655443 56899999999999873
Q ss_pred CcccCCCchHHHHHHHhh---HHHHHHHHH-------HHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChh
Q 000728 924 GWKTCRNAPIVKAIKQQN---TDVQNEFNM-------RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIP 993 (1326)
Q Consensus 924 ~w~~~~~a~~~~~L~~q~---~~~~~e~~~-------~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~ 993 (1326)
. ... ..+.... ..+...+.. -...+...+.. ++...++|++||.++.|+.
T Consensus 177 ~------~~~-~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~-------------~~~~~~vi~iSa~~~~gl~ 236 (253)
T PRK13768 177 E------EEL-ERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEE-------------TGLPVRVIPVSAKTGEGFD 236 (253)
T ss_pred c------hhH-HHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHH-------------HCCCCcEEEEECCCCcCHH
Confidence 1 111 1111111 111111111 00111111111 2334689999999999999
Q ss_pred hHHHHHHHHH
Q 000728 994 DLLLLLVQWT 1003 (1326)
Q Consensus 994 eLl~~L~~~~ 1003 (1326)
+|+.+|..++
T Consensus 237 ~L~~~I~~~l 246 (253)
T PRK13768 237 ELYAAIQEVF 246 (253)
T ss_pred HHHHHHHHHc
Confidence 9999987665
No 276
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.25 E-value=2.7e-11 Score=120.38 Aligned_cols=151 Identities=21% Similarity=0.218 Sum_probs=106.2
Q ss_pred EEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchhhhhhh
Q 000728 797 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSR 876 (1326)
Q Consensus 797 V~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~~lr~r 876 (1326)
..|+|..|+|||.||..+....+.......|...+|.-.+...... -.+.||||.|++.|......
T Consensus 14 yiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqk--------------iklqiwdtagqerfravtrs 79 (215)
T KOG0097|consen 14 YIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQK--------------IKLQIWDTAGQERFRAVTRS 79 (215)
T ss_pred EEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcE--------------EEEEEeecccHHHHHHHHHH
Confidence 5789999999999999999877766665666666665544332211 23899999999999999999
Q ss_pred ccCccceeEEeeccccCCchhHHHHHH-HHHh---cCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHHHHHHHH
Q 000728 877 GSGLCDIAILVVDIMHGLEPQTIESLN-LLKM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRL 952 (1326)
Q Consensus 877 g~~~aDiaILVVDa~~Gv~~QT~E~l~-~l~~---~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~e~~~~l 952 (1326)
+++.+-++++|+|++...+...+.+|. -++. .++-++++.||.|+... +.. ..
T Consensus 80 yyrgaagalmvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~q----rdv-------------------~y 136 (215)
T KOG0097|consen 80 YYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQ----RDV-------------------TY 136 (215)
T ss_pred HhccccceeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhhc----ccC-------------------cH
Confidence 999999999999998765544444442 2232 34568889999998521 111 11
Q ss_pred HHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHH
Q 000728 953 VQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLL 999 (1326)
Q Consensus 953 ~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L 999 (1326)
........+.| ..|+.+||+||.||.+.|...
T Consensus 137 eeak~faeeng---------------l~fle~saktg~nvedafle~ 168 (215)
T KOG0097|consen 137 EEAKEFAEENG---------------LMFLEASAKTGQNVEDAFLET 168 (215)
T ss_pred HHHHHHHhhcC---------------eEEEEecccccCcHHHHHHHH
Confidence 22222333333 478999999999999876443
No 277
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.24 E-value=1.8e-10 Score=134.91 Aligned_cols=238 Identities=18% Similarity=0.294 Sum_probs=138.8
Q ss_pred cCCCCcCCCCcccccCCCCCE-EEEEeCCCCCHHHHHHHHHcC--cccc-cccCceeeeeeeeEeccccchhhhhhhccc
Q 000728 776 SKEPEVDATPKQAEENLRSPI-CCIMGHVDTGKTKLLDCIRGT--NVQE-GEAGGITQQIGATYFPAENIRERTRELKAN 851 (1326)
Q Consensus 776 ~~~~~~~~~~~~~~~~~R~pi-V~IlGhvdaGKTTLLd~L~~~--~v~~-ge~gGITq~iga~~~~~~~~~~~~~~v~~~ 851 (1326)
.+.....+...+.+....+|+ |+|||++|+|||||+..|... .... ...|.||.-.|
T Consensus 50 ~ekklhVPmvdrtp~d~PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~GPiTvvsg------------------- 110 (1077)
T COG5192 50 EEKKLHVPMVDRTPKDLPPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGPITVVSG------------------- 110 (1077)
T ss_pred hhhccccccccCCcccCCCCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCCceEEeec-------------------
Confidence 344555666677777776665 569999999999999998642 1111 11233333222
Q ss_pred cccCCCCEEEEeCCCCcchhhhhhhccCccceeEEeeccccCCchhHHHHHHHHHhcCCcEE-EEEeccccccCcccCCC
Q 000728 852 ATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFI-VALNKVDRLYGWKTCRN 930 (1326)
Q Consensus 852 ~~~~~~~I~IIDTPGhe~F~~lr~rg~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~vP~I-VvINKiD~~~~w~~~~~ 930 (1326)
+...|+|+.+| .++. .+.-.+..+|++||+||++.|+...|.++|++|..++.|.| -|++.+|+.. +
T Consensus 111 ---K~RRiTflEcp--~Dl~-~miDvaKIaDLVlLlIdgnfGfEMETmEFLnil~~HGmPrvlgV~ThlDlfk------~ 178 (1077)
T COG5192 111 ---KTRRITFLECP--SDLH-QMIDVAKIADLVLLLIDGNFGFEMETMEFLNILISHGMPRVLGVVTHLDLFK------N 178 (1077)
T ss_pred ---ceeEEEEEeCh--HHHH-HHHhHHHhhheeEEEeccccCceehHHHHHHHHhhcCCCceEEEEeeccccc------C
Confidence 12359999999 3333 34446788999999999999999999999999999999954 5889999863 2
Q ss_pred chHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhH-HHHHHHHHHHhHhh
Q 000728 931 APIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDL-LLLLVQWTQKTMVE 1009 (1326)
Q Consensus 931 a~~~~~L~~q~~~~~~e~~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eL-l~~L~~~~q~~l~e 1009 (1326)
.+. |....+.+..+|...+. ....+|.+|.+.+--.++- +..|..++.-+-..
T Consensus 179 ~st---Lr~~KKrlkhRfWtEiy-----------------------qGaKlFylsgV~nGRYpDreilnLsRfisVMKfR 232 (1077)
T COG5192 179 PST---LRSIKKRLKHRFWTEIY-----------------------QGAKLFYLSGVENGRYPDREILNLSRFISVMKFR 232 (1077)
T ss_pred hHH---HHHHHHHHhhhHHHHHc-----------------------CCceEEEecccccCCCCCHHHHHHHHHHhhhccc
Confidence 322 33322333333322111 1135566665543222221 22223332211111
Q ss_pred hhhcc-----------cccceeE-EEEEEEeCceeEEEEEEEe-eEecCCCEEEEccCCCceeeeeeeccCCCC
Q 000728 1010 KLTFR-----------NELQCTV-LEVKVIEGHGTTIDVVLVN-GVLHEGDQIVVCGLQGPIVTTIRALLTPHP 1070 (1326)
Q Consensus 1010 ~l~~~-----------~~~~~~V-lEvk~~~G~Gtvi~giV~~-G~Lr~GD~IVl~g~~g~~~~~IR~Ll~p~p 1070 (1326)
.|.+. ..+..++ ++-...-|+-.+++|.|.. |..+....|.|.|.+...+..|-.|.+|+|
T Consensus 233 Pl~Wrn~HPy~laDR~~Dlt~p~~ieq~~kv~rki~vYGYlhGt~Lp~~d~~vHIpGvGDf~~adve~L~DPcP 306 (1077)
T COG5192 233 PLEWRNMHPYVLADRVDDLTLPVDIEQNPKVGRKITVYGYLHGTGLPRKDMEVHIPGVGDFRMADVEVLIDPCP 306 (1077)
T ss_pred ccccccCCceeehhhhccccchhhhhhccccCceEEEEEEecCCCCCCCCceEeccCccccchhhhhhcCCCCC
Confidence 11111 1111111 1111122556677787764 444555567777877667778888888886
No 278
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.24 E-value=6.6e-11 Score=135.31 Aligned_cols=113 Identities=21% Similarity=0.303 Sum_probs=76.3
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCccccccc----------CceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeC
Q 000728 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEA----------GGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDT 864 (1326)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~~~v~~ge~----------gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDT 864 (1326)
..|+|+|+.|+|||||+++|++..+..... .+++.......+..... ...|+||||
T Consensus 5 f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~--------------~~~l~iiDT 70 (276)
T cd01850 5 FNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGV--------------KLKLTVIDT 70 (276)
T ss_pred EEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCE--------------EEEEEEEec
Confidence 469999999999999999999877643311 11111111111111110 024999999
Q ss_pred CCCcchhhh--------------------------hhhccC--ccceeEEeeccc-cCCchhHHHHHHHHHhcCCcEEEE
Q 000728 865 PGHESFTNL--------------------------RSRGSG--LCDIAILVVDIM-HGLEPQTIESLNLLKMRNTEFIVA 915 (1326)
Q Consensus 865 PGhe~F~~l--------------------------r~rg~~--~aDiaILVVDa~-~Gv~~QT~E~l~~l~~~~vP~IVv 915 (1326)
||+.++.+. |...+. .+|++|++++.. +++.+..++.+..+.. ++|+|+|
T Consensus 71 pGfgd~~~~~~~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l~~-~v~vi~V 149 (276)
T cd01850 71 PGFGDNINNSDCWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRLSK-RVNIIPV 149 (276)
T ss_pred CCccccccchhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHHHhc-cCCEEEE
Confidence 997654321 111222 478899999876 5888888999998875 7999999
Q ss_pred Eeccccc
Q 000728 916 LNKVDRL 922 (1326)
Q Consensus 916 INKiD~~ 922 (1326)
+||+|++
T Consensus 150 inK~D~l 156 (276)
T cd01850 150 IAKADTL 156 (276)
T ss_pred EECCCcC
Confidence 9999986
No 279
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=99.23 E-value=4.3e-11 Score=122.21 Aligned_cols=160 Identities=21% Similarity=0.216 Sum_probs=106.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchhhhhh
Q 000728 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1326)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~~lr~ 875 (1326)
.+.++|..-+|||+||..++.+.+..-.-+. +|..+|.. ...+..... -.+.+|||.|++.|..++.
T Consensus 10 rlivigdstvgkssll~~ft~gkfaelsdpt----vgvdffar------lie~~pg~r---iklqlwdtagqerfrsitk 76 (213)
T KOG0091|consen 10 RLIVIGDSTVGKSSLLRYFTEGKFAELSDPT----VGVDFFAR------LIELRPGYR---IKLQLWDTAGQERFRSITK 76 (213)
T ss_pred EEEEEcCCcccHHHHHHHHhcCcccccCCCc----cchHHHHH------HHhcCCCcE---EEEEEeeccchHHHHHHHH
Confidence 4788999999999999999987776443332 23222211 111111100 1489999999999999999
Q ss_pred hccCccceeEEeeccccCCchhHHHHHHHHHhc------CCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHHHHH
Q 000728 876 RGSGLCDIAILVVDIMHGLEPQTIESLNLLKMR------NTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 949 (1326)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~------~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~e~~ 949 (1326)
.+++++=+++||+|+++.-.....+.|..-..+ ++-|.+|..|+|+..- +..
T Consensus 77 syyrnsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~Sq----RqV------------------ 134 (213)
T KOG0091|consen 77 SYYRNSVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQ----RQV------------------ 134 (213)
T ss_pred HHhhcccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhh----ccc------------------
Confidence 999999999999999986554444444322221 2347889999998521 100
Q ss_pred HHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHHHHHh
Q 000728 950 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKT 1006 (1326)
Q Consensus 950 ~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~q~~ 1006 (1326)
....-....+.+| ..+|.+||++|.||.+-+.+|.+.+...
T Consensus 135 -t~EEaEklAa~hg---------------M~FVETSak~g~NVeEAF~mlaqeIf~~ 175 (213)
T KOG0091|consen 135 -TAEEAEKLAASHG---------------MAFVETSAKNGCNVEEAFDMLAQEIFQA 175 (213)
T ss_pred -cHHHHHHHHHhcC---------------ceEEEecccCCCcHHHHHHHHHHHHHHH
Confidence 0111112233333 4799999999999999999887655443
No 280
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.22 E-value=3.2e-11 Score=128.86 Aligned_cols=113 Identities=20% Similarity=0.221 Sum_probs=66.5
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchhh
Q 000728 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 872 (1326)
Q Consensus 793 R~piV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~~ 872 (1326)
+.+.|.|+|+.|+|||+|+.+|.+....... ..+...++ +.+. .-....+.|||+|||..+..
T Consensus 2 k~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~-tS~e~n~~-~~~~---------------~~~~~~~~lvD~PGH~rlr~ 64 (181)
T PF09439_consen 2 KRPTVLLVGPSGSGKTALFSQLVNGKTVPTV-TSMENNIA-YNVN---------------NSKGKKLRLVDIPGHPRLRS 64 (181)
T ss_dssp ---EEEEE-STTSSHHHHHHHHHHSS---B----SSEEEE-CCGS---------------STCGTCECEEEETT-HCCCH
T ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCcCCee-ccccCCce-EEee---------------cCCCCEEEEEECCCcHHHHH
Confidence 4577999999999999999999976432111 11111111 1110 01234699999999999876
Q ss_pred hhhh---ccCccceeEEeeccccCCc---hhHHHHHHHH----H--hcCCcEEEEEecccccc
Q 000728 873 LRSR---GSGLCDIAILVVDIMHGLE---PQTIESLNLL----K--MRNTEFIVALNKVDRLY 923 (1326)
Q Consensus 873 lr~r---g~~~aDiaILVVDa~~Gv~---~QT~E~l~~l----~--~~~vP~IVvINKiD~~~ 923 (1326)
.... ++..+-++|||||+.. +. ..+.++|..+ . ...+|++||+||.|+..
T Consensus 65 ~~~~~~~~~~~~k~IIfvvDSs~-~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~ 126 (181)
T PF09439_consen 65 KLLDELKYLSNAKGIIFVVDSST-DQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFT 126 (181)
T ss_dssp HHHHHHHHHGGEEEEEEEEETTT-HHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT
T ss_pred HHHHhhhchhhCCEEEEEEeCcc-chhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccc
Confidence 5544 4888999999999874 22 2223333211 1 24689999999999863
No 281
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.20 E-value=1.2e-10 Score=132.26 Aligned_cols=157 Identities=20% Similarity=0.235 Sum_probs=102.5
Q ss_pred EEEEeCCCCCHHHHHHHHHcCc--ccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcc-----
Q 000728 797 CCIMGHVDTGKTKLLDCIRGTN--VQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES----- 869 (1326)
Q Consensus 797 V~IlGhvdaGKTTLLd~L~~~~--v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~----- 869 (1326)
|+++|.+++||||||+++.... +..+...+++..+|...+... ..++|-|.||.-.
T Consensus 162 VGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~~-----------------~sfv~ADIPGLIEGAs~G 224 (369)
T COG0536 162 VGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDGG-----------------ESFVVADIPGLIEGASEG 224 (369)
T ss_pred cccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEecCC-----------------CcEEEecCcccccccccC
Confidence 8999999999999999998765 555556666677777665221 2499999999322
Q ss_pred --hhhhhhhccCccceeEEeeccccCCc---hhHHHHH-HHHHh-----cCCcEEEEEeccccccCcccCCCchHHHHHH
Q 000728 870 --FTNLRSRGSGLCDIAILVVDIMHGLE---PQTIESL-NLLKM-----RNTEFIVALNKVDRLYGWKTCRNAPIVKAIK 938 (1326)
Q Consensus 870 --F~~lr~rg~~~aDiaILVVDa~~Gv~---~QT~E~l-~~l~~-----~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~ 938 (1326)
...-..+.+..|-++|+|||++.--. .+.+..| ..|.. .+.|.|||+||||++.+
T Consensus 225 ~GLG~~FLrHIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~-------------- 290 (369)
T COG0536 225 VGLGLRFLRHIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLD-------------- 290 (369)
T ss_pred CCccHHHHHHHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcC--------------
Confidence 12223455667999999999974321 2333333 33333 36799999999996521
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHHHHHhH
Q 000728 939 QQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTM 1007 (1326)
Q Consensus 939 ~q~~~~~~e~~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~q~~l 1007 (1326)
...+..+...|.... ..+.+++|||+|++|+..|+..+..++....
T Consensus 291 ----------~e~~~~~~~~l~~~~-------------~~~~~~~ISa~t~~g~~~L~~~~~~~l~~~~ 336 (369)
T COG0536 291 ----------EEELEELKKALAEAL-------------GWEVFYLISALTREGLDELLRALAELLEETK 336 (369)
T ss_pred ----------HHHHHHHHHHHHHhc-------------CCCcceeeehhcccCHHHHHHHHHHHHHHhh
Confidence 011222222332211 1123333999999999999999988876653
No 282
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.20 E-value=1.6e-11 Score=124.54 Aligned_cols=170 Identities=18% Similarity=0.165 Sum_probs=105.9
Q ss_pred EEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchhhhhhh
Q 000728 797 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSR 876 (1326)
Q Consensus 797 V~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~~lr~r 876 (1326)
...+|..|+||||||-++....+...- | ..+|..+-+..... +...-.....-...++.||||.|++.|.+++..
T Consensus 12 fLaLGDSGVGKTs~Ly~YTD~~F~~qF---I-sTVGIDFreKrvvY-~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTA 86 (219)
T KOG0081|consen 12 FLALGDSGVGKTSFLYQYTDGKFNTQF---I-STVGIDFREKRVVY-NSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTA 86 (219)
T ss_pred HHhhccCCCCceEEEEEecCCccccee---E-EEeecccccceEEE-eccCCCCCCcceEEEEeeeccccHHHHHHHHHH
Confidence 567899999999999988766553211 1 11221111110000 000000000000124899999999999999999
Q ss_pred ccCccceeEEeeccccCCc-hhHHHHHHHHHhc----CCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000728 877 GSGLCDIAILVVDIMHGLE-PQTIESLNLLKMR----NTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1326)
Q Consensus 877 g~~~aDiaILVVDa~~Gv~-~QT~E~l~~l~~~----~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~e~~~~ 951 (1326)
.++.+-+.||++|.+..-. ..++.+|.+|+.+ +--||++.||+|+..- +.. .
T Consensus 87 FfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~---------R~V--------------s 143 (219)
T KOG0081|consen 87 FFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQ---------RVV--------------S 143 (219)
T ss_pred HHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhh---------hhh--------------h
Confidence 9999999999999976422 3345556666553 3348999999998620 000 1
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHHHHHhHhh
Q 000728 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVE 1009 (1326)
Q Consensus 952 l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~q~~l~e 1009 (1326)
-.+.......+| +|+|.+||-||.||....+.|+.++-..|..
T Consensus 144 ~~qa~~La~kyg---------------lPYfETSA~tg~Nv~kave~LldlvM~Rie~ 186 (219)
T KOG0081|consen 144 EDQAAALADKYG---------------LPYFETSACTGTNVEKAVELLLDLVMKRIEQ 186 (219)
T ss_pred HHHHHHHHHHhC---------------CCeeeeccccCcCHHHHHHHHHHHHHHHHHH
Confidence 122333334444 5999999999999998888887766555544
No 283
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.19 E-value=1.7e-10 Score=134.06 Aligned_cols=95 Identities=18% Similarity=0.160 Sum_probs=61.3
Q ss_pred EEEEeCCCCCHHHHHHHHHcCcccccccCcee--eeeeeeEeccccchhhhhhh-cc-----ccccCCCCEEEEeCCCC-
Q 000728 797 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGIT--QQIGATYFPAENIRERTREL-KA-----NATLKVPGLLVIDTPGH- 867 (1326)
Q Consensus 797 V~IlGhvdaGKTTLLd~L~~~~v~~ge~gGIT--q~iga~~~~~~~~~~~~~~v-~~-----~~~~~~~~I~IIDTPGh- 867 (1326)
|+|+|.+++|||||+++|++..+..+..++.| ..+|..+++......+...+ .. ...+....|.||||||.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 68999999999999999998876555555544 56676665431110000000 00 00112235999999996
Q ss_pred ---cchhhhhh---hccCccceeEEeeccc
Q 000728 868 ---ESFTNLRS---RGSGLCDIAILVVDIM 891 (1326)
Q Consensus 868 ---e~F~~lr~---rg~~~aDiaILVVDa~ 891 (1326)
..+..+.. ..++.||++|+|||+.
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~ 110 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDAS 110 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 44554433 4588999999999996
No 284
>PTZ00099 rab6; Provisional
Probab=99.19 E-value=8.7e-11 Score=125.63 Aligned_cols=109 Identities=21% Similarity=0.133 Sum_probs=76.6
Q ss_pred CEEEEeCCCCcchhhhhhhccCccceeEEeeccccCCchhHHHHH-HHH-Hh--cCCcEEEEEeccccccCcccCCCchH
Q 000728 858 GLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESL-NLL-KM--RNTEFIVALNKVDRLYGWKTCRNAPI 933 (1326)
Q Consensus 858 ~I~IIDTPGhe~F~~lr~rg~~~aDiaILVVDa~~Gv~~QT~E~l-~~l-~~--~~vP~IVvINKiD~~~~w~~~~~a~~ 933 (1326)
.|.||||||++.|..++..+++.+|++|||+|+++....+....| ..+ .. .++|+|||+||+|+... +...
T Consensus 30 ~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~~~piilVgNK~DL~~~----~~v~- 104 (176)
T PTZ00099 30 RLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGDL----RKVT- 104 (176)
T ss_pred EEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccc----cCCC-
Confidence 489999999999999999999999999999999885443333222 222 22 35899999999998521 0000
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHHHH
Q 000728 934 VKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1004 (1326)
Q Consensus 934 ~~~L~~q~~~~~~e~~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~q 1004 (1326)
..........+ .+.+++|||++|.||.++|.+|+..++
T Consensus 105 ------------------~~e~~~~~~~~---------------~~~~~e~SAk~g~nV~~lf~~l~~~l~ 142 (176)
T PTZ00099 105 ------------------YEEGMQKAQEY---------------NTMFHETSAKAGHNIKVLFKKIAAKLP 142 (176)
T ss_pred ------------------HHHHHHHHHHc---------------CCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 00111111111 146899999999999999999987654
No 285
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.18 E-value=1e-10 Score=116.88 Aligned_cols=152 Identities=22% Similarity=0.237 Sum_probs=102.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeee--eeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchhhh
Q 000728 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIG--ATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL 873 (1326)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~ig--a~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~~l 873 (1326)
.|+++|..++||||||-.|....... ++.+.| .-.++ |++..+++||..|+...+.+
T Consensus 19 ~ilmlGLd~aGKTtiLyKLkl~~~~~-----~ipTvGFnvetVt----------------ykN~kfNvwdvGGqd~iRpl 77 (180)
T KOG0071|consen 19 RILMLGLDAAGKTTILYKLKLGQSVT-----TIPTVGFNVETVT----------------YKNVKFNVWDVGGQDKIRPL 77 (180)
T ss_pred eEEEEecccCCceehhhHHhcCCCcc-----cccccceeEEEEE----------------eeeeEEeeeeccCchhhhHH
Confidence 38999999999999999997543221 112222 12222 33445999999999999999
Q ss_pred hhhccCccceeEEeeccccC--CchhHHHHHHH---HHhcCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHHHH
Q 000728 874 RSRGSGLCDIAILVVDIMHG--LEPQTIESLNL---LKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEF 948 (1326)
Q Consensus 874 r~rg~~~aDiaILVVDa~~G--v~~QT~E~l~~---l~~~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~e~ 948 (1326)
|.+|+..+-++|||+|+.+. +...-.+.-.+ -....+||+|..||.|++...+
T Consensus 78 WrhYy~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~---------------------- 135 (180)
T KOG0071|consen 78 WRHYYTGTQGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMK---------------------- 135 (180)
T ss_pred HHhhccCCceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccC----------------------
Confidence 99999999999999998764 22222222222 2334689999999999974311
Q ss_pred HHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHHH
Q 000728 949 NMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1326)
Q Consensus 949 ~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1326)
..+|...|.-.-+ -+..+.+.|+||.+|.|+.+-|.||...+
T Consensus 136 ---pqei~d~leLe~~----------r~~~W~vqp~~a~~gdgL~eglswlsnn~ 177 (180)
T KOG0071|consen 136 ---PQEIQDKLELERI----------RDRNWYVQPSCALSGDGLKEGLSWLSNNL 177 (180)
T ss_pred ---HHHHHHHhccccc----------cCCccEeeccccccchhHHHHHHHHHhhc
Confidence 1222222211111 13456899999999999999888887644
No 286
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.15 E-value=6.5e-11 Score=118.76 Aligned_cols=158 Identities=25% Similarity=0.239 Sum_probs=104.7
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchhh
Q 000728 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 872 (1326)
Q Consensus 793 R~piV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~~ 872 (1326)
|.-.|.|||..|+||||++-+|--.++.... .|+......++ +++-.+++||..|+.+...
T Consensus 17 ~e~rililgldGaGkttIlyrlqvgevvttk---Ptigfnve~v~----------------yKNLk~~vwdLggqtSirP 77 (182)
T KOG0072|consen 17 REMRILILGLDGAGKTTILYRLQVGEVVTTK---PTIGFNVETVP----------------YKNLKFQVWDLGGQTSIRP 77 (182)
T ss_pred cceEEEEeeccCCCeeEEEEEcccCcccccC---CCCCcCccccc----------------cccccceeeEccCcccccH
Confidence 4445899999999999998888655543211 11111111222 3445699999999999999
Q ss_pred hhhhccCccceeEEeeccccCCc--hhHHHHHHHHH---hcCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHHH
Q 000728 873 LRSRGSGLCDIAILVVDIMHGLE--PQTIESLNLLK---MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNE 947 (1326)
Q Consensus 873 lr~rg~~~aDiaILVVDa~~Gv~--~QT~E~l~~l~---~~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~e 947 (1326)
+|..++..+|.+|+|||.++... ....+...+|. ..+..++|++||+|..+. - .
T Consensus 78 yWRcYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~-------~-----------t--- 136 (182)
T KOG0072|consen 78 YWRCYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGA-------L-----------T--- 136 (182)
T ss_pred HHHHHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhh-------h-----------h---
Confidence 99999999999999999987432 22233333333 235779999999997631 0 0
Q ss_pred HHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHHHH
Q 000728 948 FNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1004 (1326)
Q Consensus 948 ~~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~q 1004 (1326)
..++ +...|+.. +. ...+.||.+||.+|+|++..++||..-++
T Consensus 137 ----~~E~---~~~L~l~~-Lk------~r~~~Iv~tSA~kg~Gld~~~DWL~~~l~ 179 (182)
T KOG0072|consen 137 ----RSEV---LKMLGLQK-LK------DRIWQIVKTSAVKGEGLDPAMDWLQRPLK 179 (182)
T ss_pred ----HHHH---HHHhChHH-Hh------hheeEEEeeccccccCCcHHHHHHHHHHh
Confidence 0111 11222211 00 13479999999999999999999876554
No 287
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.15 E-value=7.9e-11 Score=131.79 Aligned_cols=132 Identities=18% Similarity=0.282 Sum_probs=65.8
Q ss_pred CEEEEeCCCCcchhhhhhhcc--------CccceeEEeeccccCCchhHHHHH-----HHHHhcCCcEEEEEeccccccC
Q 000728 858 GLLVIDTPGHESFTNLRSRGS--------GLCDIAILVVDIMHGLEPQTIESL-----NLLKMRNTEFIVALNKVDRLYG 924 (1326)
Q Consensus 858 ~I~IIDTPGhe~F~~lr~rg~--------~~aDiaILVVDa~~Gv~~QT~E~l-----~~l~~~~vP~IVvINKiD~~~~ 924 (1326)
.+.||||||+..|...+..+. ...=++|+++|+..-..+.+.-+. ..+...++|+|+|+||+|++..
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~~ 171 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLSK 171 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-H
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCcccc
Confidence 699999999988877666443 344568999999875555554332 2334468999999999999742
Q ss_pred cccCCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHHH
Q 000728 925 WKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1326)
Q Consensus 925 w~~~~~a~~~~~L~~q~~~~~~e~~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1326)
+ ..+.-.+......+...+......+...+... -.+++...+++|+|+.+++|+..|+..|-..+
T Consensus 172 ~-----~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~---------l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~ 236 (238)
T PF03029_consen 172 Y-----LEFILEWFEDPDSLEDLLESDYKKLNEEIAEL---------LDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN 236 (238)
T ss_dssp H-----HHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHH---------CCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred h-----hHHHHHHhcChHHHHHHHHHHHHHHHHHHHHH---------HhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence 1 11111111111111111110011111111111 01333444899999999999999998876544
No 288
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.14 E-value=8.5e-11 Score=117.49 Aligned_cols=157 Identities=24% Similarity=0.212 Sum_probs=106.9
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchh
Q 000728 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 871 (1326)
Q Consensus 792 ~R~piV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~ 871 (1326)
-|-+.|.++|-.++||||||..|.+..+. .+|...|+....... ....++++||..|+...+
T Consensus 15 ~rEirilllGldnAGKTT~LKqL~sED~~-----hltpT~GFn~k~v~~-------------~g~f~LnvwDiGGqr~IR 76 (185)
T KOG0074|consen 15 RREIRILLLGLDNAGKTTFLKQLKSEDPR-----HLTPTNGFNTKKVEY-------------DGTFHLNVWDIGGQRGIR 76 (185)
T ss_pred cceEEEEEEecCCCcchhHHHHHccCChh-----hccccCCcceEEEee-------------cCcEEEEEEecCCccccc
Confidence 35566999999999999999999876543 244444443332221 112459999999999999
Q ss_pred hhhhhccCccceeEEeeccccCC--chhHHHHHHHH---HhcCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHH
Q 000728 872 NLRSRGSGLCDIAILVVDIMHGL--EPQTIESLNLL---KMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQN 946 (1326)
Q Consensus 872 ~lr~rg~~~aDiaILVVDa~~Gv--~~QT~E~l~~l---~~~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~ 946 (1326)
..|+.|+...|++|+|||.++.- .....+...++ +...+|+.|+.||.|++...
T Consensus 77 pyWsNYyenvd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa--------------------- 135 (185)
T KOG0074|consen 77 PYWSNYYENVDGLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAA--------------------- 135 (185)
T ss_pred hhhhhhhhccceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhc---------------------
Confidence 99999999999999999977632 22222233333 34568999999999997310
Q ss_pred HHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHH
Q 000728 947 EFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1001 (1326)
Q Consensus 947 e~~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~ 1001 (1326)
....+..-|.-.|+. .+.+.|-.+||++++|+.+-.+|+..
T Consensus 136 ----~~eeia~klnl~~lr----------dRswhIq~csals~eg~~dg~~wv~s 176 (185)
T KOG0074|consen 136 ----KVEEIALKLNLAGLR----------DRSWHIQECSALSLEGSTDGSDWVQS 176 (185)
T ss_pred ----chHHHHHhcchhhhh----------hceEEeeeCccccccCccCcchhhhc
Confidence 112222222222221 13578999999999999988887753
No 289
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=99.14 E-value=5.8e-10 Score=134.64 Aligned_cols=124 Identities=27% Similarity=0.310 Sum_probs=76.8
Q ss_pred hhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH--hhhhhchh
Q 000728 508 KKMSKQVREMQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKK-EKEKEKLLKKKQ--EGKLLTGK 584 (1326)
Q Consensus 508 ~~~~~~~~~~~e~~~~~~~~eE~~~r~EEE~~~~eeEe~~~~ee~er~~~e~~~~k~-~~~k~k~~~~k~--e~k~~~~k 584 (1326)
.+...+.++.+...+.+++..++++ ++||+.+|++||+.|++++++++++++++.+ +++..++++++. +++...++
T Consensus 203 ak~Kk~~kk~~Kgv~~~qe~La~~q-e~eE~qkreeEE~~r~eeEEer~~ee~E~~~eEak~kkKekekek~er~KaeGk 281 (1064)
T KOG1144|consen 203 AKGKKAEKKKPKGVRAMQEALAKRQ-EEEERQKREEEERLRREEEEERRREEEEAQEEEAKEKKKEKEKEKKERKKAEGK 281 (1064)
T ss_pred hhhcccccccchhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 3445556677778888888777666 5666666677776666555554444444444 444444444443 33444478
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCCCcccccCCCccccccccccccC
Q 000728 585 QKEEARRLEAMRNQFLAKGIPLPTGDKEAASKRPKYQTKKKSAHHQAN 632 (1326)
Q Consensus 585 ~~~~~~~~e~~~~~~~~~g~~~~~~~~~~~~k~~~~~~Kkk~~~~k~~ 632 (1326)
..++.++.++.+++....+|+..|....-..+-...++++.|.+++..
T Consensus 282 lLTakQK~~~a~aea~l~~ll~sg~~~~va~kdg~~kKrpiY~nKKk~ 329 (1064)
T KOG1144|consen 282 LLTAKQKEEAALAEAFLKQLLASGGGLPVADKDGDSKKRPIYANKKKK 329 (1064)
T ss_pred cchHhhHHHHHHHHHHHHHHHhcCCCCCCCcccCCcccCccccccccc
Confidence 888888887777777777776666433233344556777788877754
No 290
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.13 E-value=3.8e-10 Score=120.66 Aligned_cols=176 Identities=18% Similarity=0.174 Sum_probs=99.6
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchhhhh
Q 000728 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1326)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~~lr 874 (1326)
+-|.++|..|+|||+|+-.|+...+.. ....|...-+.+++ ....+++||.|||.+...-.
T Consensus 39 ~~Vll~Gl~dSGKT~LF~qL~~gs~~~-TvtSiepn~a~~r~------------------gs~~~~LVD~PGH~rlR~kl 99 (238)
T KOG0090|consen 39 NAVLLVGLSDSGKTSLFTQLITGSHRG-TVTSIEPNEATYRL------------------GSENVTLVDLPGHSRLRRKL 99 (238)
T ss_pred CcEEEEecCCCCceeeeeehhcCCccC-eeeeeccceeeEee------------------cCcceEEEeCCCcHHHHHHH
Confidence 349999999999999999998764331 11222223333322 22348999999999987665
Q ss_pred hhccC---ccceeEEeeccccCCc--hhHHHHH-HH---H--HhcCCcEEEEEeccccccCcccCCCchHHHHHHHhhHH
Q 000728 875 SRGSG---LCDIAILVVDIMHGLE--PQTIESL-NL---L--KMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTD 943 (1326)
Q Consensus 875 ~rg~~---~aDiaILVVDa~~Gv~--~QT~E~l-~~---l--~~~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~ 943 (1326)
.-++. .+-++|+|||+..-.. ..+-++| .. . ....+|++|++||.|+... -....+++|.+.
T Consensus 100 ~e~~~~~~~akaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tA-------kt~~~Ir~~LEk 172 (238)
T KOG0090|consen 100 LEYLKHNYSAKAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTA-------KTAEKIRQQLEK 172 (238)
T ss_pred HHHccccccceeEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhc-------CcHHHHHHHHHH
Confidence 55555 6889999999864221 1222222 11 1 2346899999999999732 222233332221
Q ss_pred HHHHHHHHHHHHHHHHHHcCC----chhhhhc------ccCCC-cceeEEeCCCcCCCChhhHHHHHHH
Q 000728 944 VQNEFNMRLVQIVTQLKEQGM----NTELYYK------NKDRG-ETFNIVPTSAISGEGIPDLLLLLVQ 1001 (1326)
Q Consensus 944 ~~~e~~~~l~~I~~~L~e~Gl----~~e~~~~------~~d~g-~~v~iVpvSA~tGeGI~eLl~~L~~ 1001 (1326)
+++.. ..-+..+...+. +....|. -.++. ..+.|.++|+++| +|.++..||..
T Consensus 173 ---Ei~~l-r~sRsa~~~~~~ed~~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~ 236 (238)
T KOG0090|consen 173 ---EIHKL-RESRSALRSISDEDIAKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIRE 236 (238)
T ss_pred ---HHHHH-HHHHhhhhccccccccccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHH
Confidence 11111 111111111110 0000111 01222 5688999999999 88888888754
No 291
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.11 E-value=3.1e-10 Score=133.65 Aligned_cols=159 Identities=20% Similarity=0.262 Sum_probs=106.0
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCccc-ccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcc---
Q 000728 794 SPICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES--- 869 (1326)
Q Consensus 794 ~piV~IlGhvdaGKTTLLd~L~~~~v~-~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~--- 869 (1326)
.+.|+|+|.+|+|||||||+|.+..+. .+..+|+|.+.--+.|. +++..++|+||.|...
T Consensus 268 gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~----------------~~G~~v~L~DTAGiRe~~~ 331 (531)
T KOG1191|consen 268 GLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVT----------------VNGVPVRLSDTAGIREESN 331 (531)
T ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEee----------------cCCeEEEEEeccccccccC
Confidence 367999999999999999999987654 46667788775444443 3445699999999654
Q ss_pred -----hhhhhh-hccCccceeEEeeccccCCchhHHHHHHHHHhc------------CCcEEEEEeccccccCcccCCCc
Q 000728 870 -----FTNLRS-RGSGLCDIAILVVDIMHGLEPQTIESLNLLKMR------------NTEFIVALNKVDRLYGWKTCRNA 931 (1326)
Q Consensus 870 -----F~~lr~-rg~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~------------~vP~IVvINKiD~~~~w~~~~~a 931 (1326)
..-+|. ..+..+|+++||||++.+...+.....+.+... ..|+|+++||+|+.......+..
T Consensus 332 ~~iE~~gI~rA~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~ 411 (531)
T KOG1191|consen 332 DGIEALGIERARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKI 411 (531)
T ss_pred ChhHHHhHHHHHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCC
Confidence 222222 356789999999999887766666555554432 25899999999986421111110
Q ss_pred hHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCccee-EEeCCCcCCCChhhHHHHHHHHH
Q 000728 932 PIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFN-IVPTSAISGEGIPDLLLLLVQWT 1003 (1326)
Q Consensus 932 ~~~~~L~~q~~~~~~e~~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~-iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1326)
+ + .|.. ...++.++ ++.+|++|++|+..|...|...+
T Consensus 412 ~-----------------------~-----------~~~~-~~~~~~~~i~~~vs~~tkeg~~~L~~all~~~ 449 (531)
T KOG1191|consen 412 P-----------------------V-----------VYPS-AEGRSVFPIVVEVSCTTKEGCERLSTALLNIV 449 (531)
T ss_pred c-----------------------e-----------eccc-cccCcccceEEEeeechhhhHHHHHHHHHHHH
Confidence 0 0 0000 01122344 45599999999999998886544
No 292
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.10 E-value=5.5e-10 Score=130.19 Aligned_cols=114 Identities=18% Similarity=0.205 Sum_probs=67.3
Q ss_pred CCCCEEEEeCCCCcchhhhhhhccCccceeEEeeccccCCchhHHHHHHHHHhcCCcEEEEEeccccccCcccCCCchHH
Q 000728 855 KVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIV 934 (1326)
Q Consensus 855 ~~~~I~IIDTPGhe~F~~lr~rg~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~vP~IVvINKiD~~~~w~~~~~a~~~ 934 (1326)
..+.++||||+|...-... ....+|++|||++...|...|.... -...+..|||+||+|+... ...
T Consensus 147 ~g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k~----gi~E~aDIiVVNKaDl~~~------~~a- 212 (332)
T PRK09435 147 AGYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIKK----GIMELADLIVINKADGDNK------TAA- 212 (332)
T ss_pred cCCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHHh----hhhhhhheEEeehhcccch------hHH-
Confidence 4567999999996522211 3567999999987555444443221 0122234899999998631 000
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHHHH
Q 000728 935 KAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1004 (1326)
Q Consensus 935 ~~L~~q~~~~~~e~~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~q 1004 (1326)
......+...|... ... ..+...||++|||++|.||++|+..|..+++
T Consensus 213 --------------~~~~~el~~~L~l~--~~~------~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~ 260 (332)
T PRK09435 213 --------------RRAAAEYRSALRLL--RPK------DPGWQPPVLTCSALEGEGIDEIWQAIEDHRA 260 (332)
T ss_pred --------------HHHHHHHHHHHhcc--ccc------ccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 00111222222111 000 0012358999999999999999999988765
No 293
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.06 E-value=5e-10 Score=122.69 Aligned_cols=167 Identities=16% Similarity=0.160 Sum_probs=89.5
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCccc-------ccccC-cee----eeeee--eEeccccchh----hhhhhcccccc
Q 000728 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQ-------EGEAG-GIT----QQIGA--TYFPAENIRE----RTRELKANATL 854 (1326)
Q Consensus 793 R~piV~IlGhvdaGKTTLLd~L~~~~v~-------~ge~g-GIT----q~iga--~~~~~~~~~~----~~~~v~~~~~~ 854 (1326)
..|+|+|+|+.|+|||||+.+|+..... .+... ++. ...|. ..+....+.. ...........
T Consensus 21 ~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l~~~~~ 100 (207)
T TIGR00073 21 GLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHALEDLPL 100 (207)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHHHHhcc
Confidence 4667999999999999999999753110 11100 000 00011 0000000000 00000001112
Q ss_pred CCCCEEEEeCCCCcchhhhhhhccCccceeEEeeccccCCchhHHHHHHHHHhcCCcEEEEEeccccccCcccCCCchHH
Q 000728 855 KVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIV 934 (1326)
Q Consensus 855 ~~~~I~IIDTPGhe~F~~lr~rg~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~vP~IVvINKiD~~~~w~~~~~a~~~ 934 (1326)
..+.+.||+|.|..... ..+....++.++|+|+.++...+. ........|.||++||+|+... ....
T Consensus 101 ~~~d~IiIEt~G~l~~~---~~~~~~~~~~i~Vvd~~~~d~~~~----~~~~~~~~a~iiv~NK~Dl~~~----~~~~-- 167 (207)
T TIGR00073 101 DDIDLLFIENVGNLVCP---ADFDLGEHMRVVLLSVTEGDDKPL----KYPGMFKEADLIVINKADLAEA----VGFD-- 167 (207)
T ss_pred CCCCEEEEecCCCcCCC---cccccccCeEEEEEecCcccchhh----hhHhHHhhCCEEEEEHHHcccc----chhh--
Confidence 24589999999932111 112234566778999887654222 2223345789999999999631 0000
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHH
Q 000728 935 KAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1326)
Q Consensus 935 ~~L~~q~~~~~~e~~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~ 1002 (1326)
+..+...+...+ +.++++++||++|.||..|+.+|..+
T Consensus 168 -----------------~~~~~~~l~~~~-------------~~~~i~~~Sa~~g~gv~~l~~~i~~~ 205 (207)
T TIGR00073 168 -----------------VEKMKADAKKIN-------------PEAEIILMSLKTGEGLDEWLEFLEGQ 205 (207)
T ss_pred -----------------HHHHHHHHHHhC-------------CCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 111222222211 23689999999999999999998764
No 294
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.03 E-value=1.2e-10 Score=115.15 Aligned_cols=153 Identities=20% Similarity=0.225 Sum_probs=98.9
Q ss_pred EEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchhhhhhhcc
Q 000728 799 IMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSRGS 878 (1326)
Q Consensus 799 IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~~lr~rg~ 878 (1326)
++|..++|||.||-++..+.+-.+. ....+|..+-. ..+.. .-....++||||.|++.|.+.+..++
T Consensus 2 llgds~~gktcllir~kdgafl~~~---fistvgid~rn--------kli~~--~~~kvklqiwdtagqerfrsvt~ayy 68 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAFLAGN---FISTVGIDFRN--------KLIDM--DDKKVKLQIWDTAGQERFRSVTHAYY 68 (192)
T ss_pred ccccCccCceEEEEEeccCceecCc---eeeeeeecccc--------ceecc--CCcEEEEEEeeccchHHHhhhhHhhh
Confidence 6899999999999877655544332 11122211110 00000 01113499999999999999999999
Q ss_pred CccceeEEeeccccCCchhHHHHH-HHHHh---cCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHHHHHHHHHH
Q 000728 879 GLCDIAILVVDIMHGLEPQTIESL-NLLKM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQ 954 (1326)
Q Consensus 879 ~~aDiaILVVDa~~Gv~~QT~E~l-~~l~~---~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~e~~~~l~~ 954 (1326)
+.+|..+||+|+.+......+..| ..+.. ..+.+.++.||||+... .+ +..+-..
T Consensus 69 rda~allllydiankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~e-----r~------------v~~ddg~---- 127 (192)
T KOG0083|consen 69 RDADALLLLYDIANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHE-----RA------------VKRDDGE---- 127 (192)
T ss_pred cccceeeeeeecccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchh-----hc------------cccchHH----
Confidence 999999999999887666555544 33333 34788999999998531 00 0000011
Q ss_pred HHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHH
Q 000728 955 IVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1326)
Q Consensus 955 I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~ 1002 (1326)
.....+| +||+.+||+||-||+-.|..|...
T Consensus 128 --kla~~y~---------------ipfmetsaktg~nvd~af~~ia~~ 158 (192)
T KOG0083|consen 128 --KLAEAYG---------------IPFMETSAKTGFNVDLAFLAIAEE 158 (192)
T ss_pred --HHHHHHC---------------CCceeccccccccHhHHHHHHHHH
Confidence 1122233 699999999999998877776543
No 295
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.02 E-value=2.2e-09 Score=128.41 Aligned_cols=97 Identities=16% Similarity=0.104 Sum_probs=61.7
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCcccccccCcee--eeeeeeEeccccchhhhhhhc------cccccCCCCEEEEeCCC
Q 000728 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGIT--QQIGATYFPAENIRERTRELK------ANATLKVPGLLVIDTPG 866 (1326)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGIT--q~iga~~~~~~~~~~~~~~v~------~~~~~~~~~I~IIDTPG 866 (1326)
+.|+|+|.+++|||||+++|++..+.....++.| ..+|..+++......+...+. +...+....|+||||||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 4699999999999999999998877655555555 566666654321100100000 00011123589999999
Q ss_pred Cc----chhh---hhhhccCccceeEEeeccc
Q 000728 867 HE----SFTN---LRSRGSGLCDIAILVVDIM 891 (1326)
Q Consensus 867 he----~F~~---lr~rg~~~aDiaILVVDa~ 891 (1326)
.. .+.. .....++.||++|+|||+.
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 52 2333 3334488999999999996
No 296
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.01 E-value=2.2e-09 Score=119.97 Aligned_cols=132 Identities=18% Similarity=0.287 Sum_probs=84.4
Q ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHcCcccccccCceeee---e--------eeeEeccc--------cchhh----hhh
Q 000728 791 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQ---I--------GATYFPAE--------NIRER----TRE 847 (1326)
Q Consensus 791 ~~R~piV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~---i--------ga~~~~~~--------~~~~~----~~~ 847 (1326)
.+..|.|+|+|+.++||||||++|.+..+.....+.+|.. + .+.++... .+... +..
T Consensus 23 ~i~~p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t~~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 102 (240)
T smart00053 23 DLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDR 102 (240)
T ss_pred CCCCCeEEEEcCCCccHHHHHHHHhCCCccccCCCcccccceEEEccCCCCcceEEEecCCcccCCHHHHHHHHHHHHHH
Confidence 3677889999999999999999999865322222233311 1 01111000 00000 000
Q ss_pred hc-------c---cccc---CCCCEEEEeCCCCcch-------------hhhhhhccCc-cceeEEeeccccCCchhH-H
Q 000728 848 LK-------A---NATL---KVPGLLVIDTPGHESF-------------TNLRSRGSGL-CDIAILVVDIMHGLEPQT-I 899 (1326)
Q Consensus 848 v~-------~---~~~~---~~~~I~IIDTPGhe~F-------------~~lr~rg~~~-aDiaILVVDa~~Gv~~QT-~ 899 (1326)
+. . ...+ ..+.|+||||||.... ..+...++.. .+++|+|||+..++..+. .
T Consensus 103 ~~~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l 182 (240)
T smart00053 103 VTGTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDAL 182 (240)
T ss_pred hcCCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHH
Confidence 00 0 0001 1367999999997521 2345567774 569999999999888877 5
Q ss_pred HHHHHHHhcCCcEEEEEeccccc
Q 000728 900 ESLNLLKMRNTEFIVALNKVDRL 922 (1326)
Q Consensus 900 E~l~~l~~~~vP~IVvINKiD~~ 922 (1326)
+..+.+...+.|+|+|+||+|..
T Consensus 183 ~ia~~ld~~~~rti~ViTK~D~~ 205 (240)
T smart00053 183 KLAKEVDPQGERTIGVITKLDLM 205 (240)
T ss_pred HHHHHHHHcCCcEEEEEECCCCC
Confidence 77888888899999999999987
No 297
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.01 E-value=6.3e-10 Score=119.66 Aligned_cols=172 Identities=18% Similarity=0.196 Sum_probs=106.9
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchh
Q 000728 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 871 (1326)
Q Consensus 792 ~R~piV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~ 871 (1326)
.+...|+|+|...+|||+||..+....+.....+.+.-.. ...+... .-....+.+|||.|+++|.
T Consensus 2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdny-s~~v~V~-------------dg~~v~L~LwDTAGqedYD 67 (198)
T KOG0393|consen 2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNY-SANVTVD-------------DGKPVELGLWDTAGQEDYD 67 (198)
T ss_pred ceeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccc-eEEEEec-------------CCCEEEEeeeecCCCcccc
Confidence 3456799999999999999999987766655544444222 1112111 0011248999999999999
Q ss_pred hhhhhccCccceeEEeeccccCCchhH--HHHHHHHHh--cCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHHH
Q 000728 872 NLRSRGSGLCDIAILVVDIMHGLEPQT--IESLNLLKM--RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNE 947 (1326)
Q Consensus 872 ~lr~rg~~~aDiaILVVDa~~Gv~~QT--~E~l~~l~~--~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~e 947 (1326)
.+|...++.+|++|++++......... ..++-.++. .++|+|+|.+|.|+.. .......|..+.....
T Consensus 68 rlRplsY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~cp~vpiiLVGtk~DLr~------d~~~~~~l~~~~~~~V-- 139 (198)
T KOG0393|consen 68 RLRPLSYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHCPNVPIILVGTKADLRD------DPSTLEKLQRQGLEPV-- 139 (198)
T ss_pred cccccCCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhCCCCCEEEEeehHHhhh------CHHHHHHHHhccCCcc--
Confidence 999889999999999998876432221 112222222 4699999999999962 2222222221100000
Q ss_pred HHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHH
Q 000728 948 FNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1326)
Q Consensus 948 ~~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~ 1002 (1326)
...+-.....+. +.+.++.+||++..||.+.|+..+..
T Consensus 140 ---t~~~g~~lA~~i--------------ga~~y~EcSa~tq~~v~~vF~~a~~~ 177 (198)
T KOG0393|consen 140 ---TYEQGLELAKEI--------------GAVKYLECSALTQKGVKEVFDEAIRA 177 (198)
T ss_pred ---cHHHHHHHHHHh--------------CcceeeeehhhhhCCcHHHHHHHHHH
Confidence 000111111111 34689999999999999999876644
No 298
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=98.99 E-value=1e-09 Score=113.62 Aligned_cols=208 Identities=13% Similarity=0.075 Sum_probs=128.7
Q ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcch
Q 000728 791 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF 870 (1326)
Q Consensus 791 ~~R~piV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F 870 (1326)
--|.+.++|+|..++||||+|.+++.+-+..+... .||..++.. ...+.. ....+.+|||.|++.|
T Consensus 17 ~e~aiK~vivGng~VGKssmiqryCkgifTkdykk----tIgvdfler------qi~v~~----Edvr~mlWdtagqeEf 82 (246)
T KOG4252|consen 17 YERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKK----TIGVDFLER------QIKVLI----EDVRSMLWDTAGQEEF 82 (246)
T ss_pred hhhhEEEEEECCCccchHHHHHHHhcccccccccc----ccchhhhhH------HHHhhH----HHHHHHHHHhccchhH
Confidence 34778899999999999999999997765544322 333333221 111111 1123789999999999
Q ss_pred hhhhhhccCccceeEEeeccccCCchhHHHHH-HHHHh--cCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHHH
Q 000728 871 TNLRSRGSGLCDIAILVVDIMHGLEPQTIESL-NLLKM--RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNE 947 (1326)
Q Consensus 871 ~~lr~rg~~~aDiaILVVDa~~Gv~~QT~E~l-~~l~~--~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~e 947 (1326)
-.++..+++.+...|||++.++.........| +.... ..+|.|+|-||||++.+ +.+
T Consensus 83 DaItkAyyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~~~IPtV~vqNKIDlved------s~~-------------- 142 (246)
T KOG4252|consen 83 DAITKAYYRGAQASVLVFSTTDRYSFEATLEWYNKVQKETERIPTVFVQNKIDLVED------SQM-------------- 142 (246)
T ss_pred HHHHHHHhccccceEEEEecccHHHHHHHHHHHHHHHHHhccCCeEEeeccchhhHh------hhc--------------
Confidence 99999999999999999999886554443333 33322 36999999999999732 000
Q ss_pred HHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHHHHHhHhhhhhcccccceeEE-EEEE
Q 000728 948 FNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQCTVL-EVKV 1026 (1326)
Q Consensus 948 ~~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~q~~l~e~l~~~~~~~~~Vl-Evk~ 1026 (1326)
.-..+-...... ...++-+|++...||...|..|...+...+...++.+...+..-. ..+.
T Consensus 143 ---~~~evE~lak~l---------------~~RlyRtSvked~NV~~vF~YLaeK~~q~~kq~~~~~~~~q~sSsn~~~s 204 (246)
T KOG4252|consen 143 ---DKGEVEGLAKKL---------------HKRLYRTSVKEDFNVMHVFAYLAEKLTQQKKQSLNANERKQSSSSNSTYS 204 (246)
T ss_pred ---chHHHHHHHHHh---------------hhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhchhhccccCCCCcc
Confidence 000111111111 146778899999999999999988776666665554332211100 0011
Q ss_pred EeCceeEEEEEEEeeEecCCCEEEEcc
Q 000728 1027 IEGHGTTIDVVLVNGVLHEGDQIVVCG 1053 (1326)
Q Consensus 1027 ~~G~Gtvi~giV~~G~Lr~GD~IVl~g 1053 (1326)
..+. .+..-..+++.++++|++.+
T Consensus 205 tsp~---s~t~~~~~t~~~~~ti~lrP 228 (246)
T KOG4252|consen 205 TSPP---STTVEAWVTPVPTATITLRP 228 (246)
T ss_pred CCCC---cceeeeeeeecCCceeeech
Confidence 1111 12223456778888887744
No 299
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=98.98 E-value=2.6e-09 Score=120.65 Aligned_cols=190 Identities=18% Similarity=0.189 Sum_probs=105.6
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCc-chhh-
Q 000728 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHE-SFTN- 872 (1326)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe-~F~~- 872 (1326)
-.|+++|.+++||||||++|+++....+....+|...- .....|+.-.|+|+|+||.. ..+.
T Consensus 64 a~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~V----------------PG~l~Y~ga~IQild~Pgii~gas~g 127 (365)
T COG1163 64 ATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPV----------------PGMLEYKGAQIQLLDLPGIIEGASSG 127 (365)
T ss_pred eEEEEEcCCCccHHHHHHHHhCCCccccccCceecccc----------------cceEeecCceEEEEcCcccccCcccC
Confidence 34999999999999999999987655444444333322 22234555679999999943 2322
Q ss_pred -----hhhhccCccceeEEeeccccCCchhHHHH-HHHHHhcC-----CcEEEEEeccccccCcccCCCchHHHHHHHhh
Q 000728 873 -----LRSRGSGLCDIAILVVDIMHGLEPQTIES-LNLLKMRN-----TEFIVALNKVDRLYGWKTCRNAPIVKAIKQQN 941 (1326)
Q Consensus 873 -----lr~rg~~~aDiaILVVDa~~Gv~~QT~E~-l~~l~~~~-----vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~ 941 (1326)
.....++.||++|+|+|+...... ++. .+.|...+ .|--|.|.|-.+- +-.-.....+...-....
T Consensus 128 ~grG~~vlsv~R~ADlIiiVld~~~~~~~--~~~i~~ELe~~GIrlnk~~p~V~I~kk~~g-GI~i~~t~~l~~~d~~~i 204 (365)
T COG1163 128 RGRGRQVLSVARNADLIIIVLDVFEDPHH--RDIIERELEDVGIRLNKRPPDVTIKKKESG-GIRINGTGPLTHLDEDTV 204 (365)
T ss_pred CCCcceeeeeeccCCEEEEEEecCCChhH--HHHHHHHHHhcCeEecCCCCceEEEEeccC-CEEEecccccccCCHHHH
Confidence 234457889999999999865432 322 23444433 3444455554431 100000000000001111
Q ss_pred HHHHHHHHH-----------HHHHHHHHHHHcC-CchhhhhcccC----------CCcceeEEeCCCcCCCChhhHHHHH
Q 000728 942 TDVQNEFNM-----------RLVQIVTQLKEQG-MNTELYYKNKD----------RGETFNIVPTSAISGEGIPDLLLLL 999 (1326)
Q Consensus 942 ~~~~~e~~~-----------~l~~I~~~L~e~G-l~~e~~~~~~d----------~g~~v~iVpvSA~tGeGI~eLl~~L 999 (1326)
..+..+|.. .++.++..+...- +.+.+|.-|+- +.....+|++||.+|.||+.|.+.|
T Consensus 205 r~iL~Ey~I~nA~V~Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~~e~~~~l~~~~~~v~isa~~~~nld~L~e~i 284 (365)
T COG1163 205 RAILREYRIHNADVLIREDVTLDDLIDALEGNRVYKPALYVVNKIDLPGLEELERLARKPNSVPISAKKGINLDELKERI 284 (365)
T ss_pred HHHHHHhCcccceEEEecCCcHHHHHHHHhhcceeeeeEEEEecccccCHHHHHHHHhccceEEEecccCCCHHHHHHHH
Confidence 222233321 2455555554332 33444433321 1234578999999999999999988
Q ss_pred HHHH
Q 000728 1000 VQWT 1003 (1326)
Q Consensus 1000 ~~~~ 1003 (1326)
...+
T Consensus 285 ~~~L 288 (365)
T COG1163 285 WDVL 288 (365)
T ss_pred HHhh
Confidence 6543
No 300
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.96 E-value=4e-09 Score=122.20 Aligned_cols=114 Identities=16% Similarity=0.203 Sum_probs=64.7
Q ss_pred cCCCCEEEEeCCCCcchhhhhhhccCccceeEEeeccccCCchhHHHHHHHHHhcCCcEEEEEeccccccCcccCCCchH
Q 000728 854 LKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPI 933 (1326)
Q Consensus 854 ~~~~~I~IIDTPGhe~F~~lr~rg~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~vP~IVvINKiD~~~~w~~~~~a~~ 933 (1326)
...+.++||||||...-. ...+..+|.+++|.....+.. +..+.. ....+|.|||+||+|++.. ...
T Consensus 124 ~~g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~~~~e---l~~~~~-~l~~~~~ivv~NK~Dl~~~------~~~ 190 (300)
T TIGR00750 124 AAGYDVIIVETVGVGQSE---VDIANMADTFVVVTIPGTGDD---LQGIKA-GLMEIADIYVVNKADGEGA------TNV 190 (300)
T ss_pred hCCCCEEEEeCCCCchhh---hHHHHhhceEEEEecCCccHH---HHHHHH-HHhhhccEEEEEcccccch------hHH
Confidence 346789999999964222 224567899888865443322 222221 1246889999999998631 000
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHHH
Q 000728 934 VKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1326)
Q Consensus 934 ~~~L~~q~~~~~~e~~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1326)
.. +...+.. .+.. +... ...| ..++++|||++|.||.+|+.+|..+.
T Consensus 191 -~~-------~~~~~~~-------~l~~--l~~~----~~~~--~~~v~~iSA~~g~Gi~~L~~~i~~~~ 237 (300)
T TIGR00750 191 -TI-------ARLMLAL-------ALEE--IRRR----EDGW--RPPVLTTSAVEGRGIDELWDAIEEHK 237 (300)
T ss_pred -HH-------HHHHHHH-------HHhh--cccc----ccCC--CCCEEEEEccCCCCHHHHHHHHHHHH
Confidence 00 0000000 0000 0000 0012 24799999999999999999987754
No 301
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=98.92 E-value=1.2e-08 Score=120.05 Aligned_cols=171 Identities=19% Similarity=0.276 Sum_probs=89.2
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCccc-cccc-Cce---eeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCc-
Q 000728 795 PICCIMGHVDTGKTKLLDCIRGTNVQ-EGEA-GGI---TQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHE- 868 (1326)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~~~v~-~ge~-gGI---Tq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe- 868 (1326)
..|+|+|.+|+|||||+|+||+-... .+.+ .|+ |.....|..| +.|+++|||.||..
T Consensus 36 l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p-----------------~~pnv~lWDlPG~gt 98 (376)
T PF05049_consen 36 LNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHP-----------------KFPNVTLWDLPGIGT 98 (376)
T ss_dssp EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-S-----------------S-TTEEEEEE--GGG
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCC-----------------CCCCCeEEeCCCCCC
Confidence 45999999999999999999974322 1111 122 2222222221 23679999999953
Q ss_pred -ch---hhhhhhccCccceeEEeeccccCCchhHHHHHHHHHhcCCcEEEEEecccc-ccCcccCCCchHHHHHHHhhHH
Q 000728 869 -SF---TNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDR-LYGWKTCRNAPIVKAIKQQNTD 943 (1326)
Q Consensus 869 -~F---~~lr~rg~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~vP~IVvINKiD~-~~~w~~~~~a~~~~~L~~q~~~ 943 (1326)
.| .-+-...+...|.+|+|.+ ..+..........++.++.||.+|-||+|. +++-.......|... .
T Consensus 99 ~~f~~~~Yl~~~~~~~yD~fiii~s--~rf~~ndv~La~~i~~~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e--~---- 170 (376)
T PF05049_consen 99 PNFPPEEYLKEVKFYRYDFFIIISS--ERFTENDVQLAKEIQRMGKKFYFVRTKVDSDLYNERRRKPRTFNEE--K---- 170 (376)
T ss_dssp SS--HHHHHHHTTGGG-SEEEEEES--SS--HHHHHHHHHHHHTT-EEEEEE--HHHHHHHHHCC-STT--HH--T----
T ss_pred CCCCHHHHHHHccccccCEEEEEeC--CCCchhhHHHHHHHHHcCCcEEEEEecccccHhhhhccCCcccCHH--H----
Confidence 23 2223346788998877765 345666677778888899999999999996 211000011111100 0
Q ss_pred HHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcC--CCChhhHHHHHHHHHHH
Q 000728 944 VQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAIS--GEGIPDLLLLLVQWTQK 1005 (1326)
Q Consensus 944 ~~~e~~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~t--GeGI~eLl~~L~~~~q~ 1005 (1326)
.+...-..+...|...|+. ..+||.||+.. ...++.|.+.|..-++.
T Consensus 171 ---~L~~IR~~c~~~L~k~gv~------------~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~ 219 (376)
T PF05049_consen 171 ---LLQEIRENCLENLQKAGVS------------EPQVFLVSSFDLSKYDFPKLEETLEKDLPA 219 (376)
T ss_dssp ---HHHHHHHHHHHHHHCTT-S------------S--EEEB-TTTTTSTTHHHHHHHHHHHS-G
T ss_pred ---HHHHHHHHHHHHHHHcCCC------------cCceEEEeCCCcccCChHHHHHHHHHHhHH
Confidence 0111123345555555542 35788888864 45677777777665543
No 302
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.91 E-value=2.9e-09 Score=105.13 Aligned_cols=137 Identities=24% Similarity=0.285 Sum_probs=94.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCC----Ccchh
Q 000728 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPG----HESFT 871 (1326)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPG----he~F~ 871 (1326)
.|++||.+|+|||||++.|++..+.-. -||-+ .+ + .=..||||| |..+.
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~lyk----KTQAv---e~------------------~--d~~~IDTPGEy~~~~~~Y 55 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDTLYK----KTQAV---EF------------------N--DKGDIDTPGEYFEHPRWY 55 (148)
T ss_pred eeEEecccccCchhHHHHhhcchhhhc----cccee---ec------------------c--CccccCCchhhhhhhHHH
Confidence 389999999999999999986543211 12221 11 1 123799999 44443
Q ss_pred hhhhhccCccceeEEeeccccCCchhHHHHHHHHHhcCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000728 872 NLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1326)
Q Consensus 872 ~lr~rg~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~e~~~~ 951 (1326)
.-....+..+|++++|-.++++.++- .-.++.....|+|=+++|+|+.. ..+
T Consensus 56 ~aL~tt~~dadvi~~v~~and~~s~f---~p~f~~~~~k~vIgvVTK~DLae-------------------------d~d 107 (148)
T COG4917 56 HALITTLQDADVIIYVHAANDPESRF---PPGFLDIGVKKVIGVVTKADLAE-------------------------DAD 107 (148)
T ss_pred HHHHHHhhccceeeeeecccCccccC---CcccccccccceEEEEecccccc-------------------------hHh
Confidence 33444567799999999999864321 12233345568999999999962 123
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHH
Q 000728 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1001 (1326)
Q Consensus 952 l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~ 1001 (1326)
+..+..+|.+.| .-+||.+|++...||.+|+..|..
T Consensus 108 I~~~~~~L~eaG--------------a~~IF~~s~~d~~gv~~l~~~L~~ 143 (148)
T COG4917 108 ISLVKRWLREAG--------------AEPIFETSAVDNQGVEELVDYLAS 143 (148)
T ss_pred HHHHHHHHHHcC--------------CcceEEEeccCcccHHHHHHHHHh
Confidence 455666777765 248999999999999999988764
No 303
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=98.91 E-value=6.5e-09 Score=116.89 Aligned_cols=148 Identities=25% Similarity=0.253 Sum_probs=98.4
Q ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcc-
Q 000728 791 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES- 869 (1326)
Q Consensus 791 ~~R~piV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~- 869 (1326)
..-.|+|+++|.+|+|||||+++|+..++.... ++.++..|+... ..+ -.+..++|.||-|+-+
T Consensus 175 ~~s~pviavVGYTNaGKsTLikaLT~Aal~p~d------rLFATLDpT~h~----a~L-----psg~~vlltDTvGFisd 239 (410)
T KOG0410|consen 175 GESSPVIAVVGYTNAGKSTLIKALTKAALYPND------RLFATLDPTLHS----AHL-----PSGNFVLLTDTVGFISD 239 (410)
T ss_pred cCCCceEEEEeecCccHHHHHHHHHhhhcCccc------hhheeccchhhh----ccC-----CCCcEEEEeechhhhhh
Confidence 455789999999999999999999977765432 344443333210 011 1123589999999644
Q ss_pred --------hhhhhhhccCccceeEEeeccccCCc-hhHHHHHHHHHhcCCc-------EEEEEeccccccCcccCCCchH
Q 000728 870 --------FTNLRSRGSGLCDIAILVVDIMHGLE-PQTIESLNLLKMRNTE-------FIVALNKVDRLYGWKTCRNAPI 933 (1326)
Q Consensus 870 --------F~~lr~rg~~~aDiaILVVDa~~Gv~-~QT~E~l~~l~~~~vP-------~IVvINKiD~~~~w~~~~~a~~ 933 (1326)
|..... -...+|++|.|+|++|+.- .|-...+..|+..++| +|=|=||+|...++..
T Consensus 240 LP~~LvaAF~ATLe-eVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e------ 312 (410)
T KOG0410|consen 240 LPIQLVAAFQATLE-EVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVE------ 312 (410)
T ss_pred CcHHHHHHHHHHHH-HHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccCc------
Confidence 333332 3456899999999999754 4555566777888875 5556677776432100
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHH
Q 000728 934 VKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1326)
Q Consensus 934 ~~~L~~q~~~~~~e~~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~ 1002 (1326)
. .....|++||+||+|+.+|+..+-..
T Consensus 313 --------------------------------~----------E~n~~v~isaltgdgl~el~~a~~~k 339 (410)
T KOG0410|consen 313 --------------------------------E----------EKNLDVGISALTGDGLEELLKAEETK 339 (410)
T ss_pred --------------------------------c----------ccCCccccccccCccHHHHHHHHHHH
Confidence 0 01126899999999999999877543
No 304
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=98.89 E-value=4.9e-09 Score=110.05 Aligned_cols=64 Identities=30% Similarity=0.385 Sum_probs=48.2
Q ss_pred CCCEEEEeCCCCcch----hhhhhhccCccceeEEeeccccCCchhHHHHHHHHHh-cCCcEEEEEecc
Q 000728 856 VPGLLVIDTPGHESF----TNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKM-RNTEFIVALNKV 919 (1326)
Q Consensus 856 ~~~I~IIDTPGhe~F----~~lr~rg~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~-~~vP~IVvINKi 919 (1326)
..+++||||||..+. ..++..++..+|++|+|+++.+.+..+....|..+.. ..-.+|+|+||+
T Consensus 100 ~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nk~ 168 (168)
T PF00350_consen 100 LRNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPDKSRTIFVLNKA 168 (168)
T ss_dssp SCSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTTCSSEEEEEE-G
T ss_pred ccceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCCCCeEEEEEcCC
Confidence 457999999996442 3567778899999999999999887666666655544 455688999985
No 305
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.89 E-value=2.5e-09 Score=110.12 Aligned_cols=110 Identities=18% Similarity=0.198 Sum_probs=77.9
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchhhhh
Q 000728 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1326)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~~lr 874 (1326)
-.++++|-.|+||||||..|-.......- .|.|...-.+. +.+-.++.+|..||..-...|
T Consensus 21 gKllFlGLDNAGKTTLLHMLKdDrl~qhv---PTlHPTSE~l~----------------Ig~m~ftt~DLGGH~qArr~w 81 (193)
T KOG0077|consen 21 GKLLFLGLDNAGKTTLLHMLKDDRLGQHV---PTLHPTSEELS----------------IGGMTFTTFDLGGHLQARRVW 81 (193)
T ss_pred ceEEEEeecCCchhhHHHHHccccccccC---CCcCCChHHhe----------------ecCceEEEEccccHHHHHHHH
Confidence 45899999999999999999754422110 12232222222 222348999999999999999
Q ss_pred hhccCccceeEEeeccccC-CchhHHHHHHHHH----hcCCcEEEEEecccccc
Q 000728 875 SRGSGLCDIAILVVDIMHG-LEPQTIESLNLLK----MRNTEFIVALNKVDRLY 923 (1326)
Q Consensus 875 ~rg~~~aDiaILVVDa~~G-v~~QT~E~l~~l~----~~~vP~IVvINKiD~~~ 923 (1326)
..++..||++|++||+.+. .....+..+..+. ..++|++|.+||||+++
T Consensus 82 kdyf~~v~~iv~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~ 135 (193)
T KOG0077|consen 82 KDYFPQVDAIVYLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPY 135 (193)
T ss_pred HHHHhhhceeEeeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCC
Confidence 9999999999999999763 2233344443332 35799999999999974
No 306
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.88 E-value=1.5e-09 Score=120.21 Aligned_cols=166 Identities=20% Similarity=0.215 Sum_probs=109.8
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCccc--c-cccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCC--
Q 000728 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQ--E-GEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPG-- 866 (1326)
Q Consensus 792 ~R~piV~IlGhvdaGKTTLLd~L~~~~v~--~-ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPG-- 866 (1326)
-+.|.++++|..++|||+||+.|++.... . ....|-||.|..+.+. ..++++|.||
T Consensus 134 ~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~-------------------~~~~~vDlPG~~ 194 (320)
T KOG2486|consen 134 DKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVG-------------------KSWYEVDLPGYG 194 (320)
T ss_pred CCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeecc-------------------ceEEEEecCCcc
Confidence 45678999999999999999999865422 1 2256677777655432 3499999999
Q ss_pred --------CcchhhhhhhccC---ccceeEEeeccccCCchhHHHHHHHHHhcCCcEEEEEeccccccCcccCCCchHHH
Q 000728 867 --------HESFTNLRSRGSG---LCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVK 935 (1326)
Q Consensus 867 --------he~F~~lr~rg~~---~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~vP~IVvINKiD~~~~w~~~~~a~~~~ 935 (1326)
-.+|..++..|+- ..=-++|+||++-++++.....|..|...++|+.+|+||||+.. .-.+.
T Consensus 195 ~a~y~~~~~~d~~~~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge~~VP~t~vfTK~DK~k--~~~~~----- 267 (320)
T KOG2486|consen 195 RAGYGFELPADWDKFTKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLGENNVPMTSVFTKCDKQK--KVKRT----- 267 (320)
T ss_pred cccCCccCcchHhHhHHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHhhcCCCeEEeeehhhhhh--hcccc-----
Confidence 1334444444332 23346788999999999999999999999999999999999862 21100
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHHH
Q 000728 936 AIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1326)
Q Consensus 936 ~L~~q~~~~~~e~~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1326)
...+...++..| +++.... +....|++.+|+.|+.|++.|+-.|.+..
T Consensus 268 -~kKp~~~i~~~f-------------~~l~~~~------f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q~~ 315 (320)
T KOG2486|consen 268 -GKKPGLNIKINF-------------QGLIRGV------FLVDLPWIYVSSVTSLGRDLLLLHIAQLR 315 (320)
T ss_pred -ccCccccceeeh-------------hhccccc------eeccCCceeeecccccCceeeeeehhhhh
Confidence 000000000000 1111110 12345788999999999999987776543
No 307
>cd03702 IF2_mtIF2_II This family represents the domain II of bacterial Initiation Factor 2 (IF2) and its eukaryotic mitochondrial homologue mtIF2. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Bacterial IF-2 is structurally and functionally related to eukaryotic mitochondrial mtIF-2.
Probab=98.87 E-value=9.4e-09 Score=99.01 Aligned_cols=89 Identities=26% Similarity=0.431 Sum_probs=72.3
Q ss_pred ceeEEEEEEEeCceeEEEEEEEeeEecCCCEEEEccCCCceeeeeeeccCCCCCceeeecceeecccccccccceeeecc
Q 000728 1018 QCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAAQGIKITAQ 1097 (1326)
Q Consensus 1018 ~~~VlEvk~~~G~Gtvi~giV~~G~Lr~GD~IVl~g~~g~~~~~IR~Ll~p~p~~e~rVk~~~~~~k~v~aa~gv~i~~~ 1097 (1326)
+++|+|++..+|+|++++++|.+|+|+.||.||++ ..+++||+|+++.+. ..+++.++++|.| .
T Consensus 2 ~g~VlE~~~~~g~G~vatviV~~GtL~~Gd~iv~G----~~~gkVr~l~d~~g~----------~v~~a~Ps~~V~I--~ 65 (95)
T cd03702 2 EGVVIESKLDKGRGPVATVLVQNGTLKVGDVLVAG----TTYGKVRAMFDENGK----------RVKEAGPSTPVEI--L 65 (95)
T ss_pred eEEEEEEEecCCCCccEEEEEEcCeEeCCCEEEEc----ccccEEEEEECCCCC----------CCCEECCCCcEEE--c
Confidence 68999999999999999999999999999988763 346799999988752 1344556666666 4
Q ss_pred cccc-ccCCCceEEcCCcchHHHHHH
Q 000728 1098 GLEH-AIAGTGLYVVGPDDDLEDVKE 1122 (1326)
Q Consensus 1098 gl~~-~~aG~~~~v~~~~~~~~~~~~ 1122 (1326)
||+. +.+|+.|+++.++..+..+..
T Consensus 66 G~~~~P~aGd~~~~~~se~~Ak~~~~ 91 (95)
T cd03702 66 GLKGVPQAGDKFLVVESEKEAKEIAE 91 (95)
T ss_pred CCCCCCCCCCEEEEeCCHHHHHHHHH
Confidence 9987 589999999999888876654
No 308
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=98.85 E-value=4.8e-08 Score=108.81 Aligned_cols=150 Identities=19% Similarity=0.183 Sum_probs=86.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCccc-ccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchhhh-
Q 000728 796 ICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL- 873 (1326)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~~~v~-~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~~l- 873 (1326)
.|++||..++||||+...|.....+ +...-|.|.++....+... ..-.++|||+||+..|...
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~---------------~~~~l~iwD~pGq~~~~~~~ 65 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFL---------------SFLPLNIWDCPGQDDFMENY 65 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECT---------------TSCEEEEEEE-SSCSTTHTT
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecC---------------CCcEEEEEEcCCcccccccc
Confidence 4899999999999999999865432 1112233443332222111 1125999999999887554
Q ss_pred ----hhhccCccceeEEeeccccCCchhHH----HHHHHHHh--cCCcEEEEEeccccccCcccCCCchHHHHHHHhhHH
Q 000728 874 ----RSRGSGLCDIAILVVDIMHGLEPQTI----ESLNLLKM--RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTD 943 (1326)
Q Consensus 874 ----r~rg~~~aDiaILVVDa~~Gv~~QT~----E~l~~l~~--~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~ 943 (1326)
+...++.|.++|+|+|+...--...+ ..|..+.. .++.+.|+|+|||++. .+.+.
T Consensus 66 ~~~~~~~if~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~-------~~~r~-------- 130 (232)
T PF04670_consen 66 FNSQREEIFSNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLS-------EDERE-------- 130 (232)
T ss_dssp HTCCHHHHHCTESEEEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS--------HHHHH--------
T ss_pred ccccHHHHHhccCEEEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCC-------HHHHH--------
Confidence 45678999999999999833222222 23333433 3688999999999873 22221
Q ss_pred HHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCC
Q 000728 944 VQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISG 989 (1326)
Q Consensus 944 ~~~e~~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tG 989 (1326)
..|......+...+...+++ .+.++.||-...
T Consensus 131 --~~~~~~~~~i~~~~~~~~~~------------~~~~~~TSI~D~ 162 (232)
T PF04670_consen 131 --EIFRDIQQRIRDELEDLGIE------------DITFFLTSIWDE 162 (232)
T ss_dssp --HHHHHHHHHHHHHHHHTT-T------------SEEEEEE-TTST
T ss_pred --HHHHHHHHHHHHHhhhcccc------------ceEEEeccCcCc
Confidence 22233444555556554432 478999998873
No 309
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=98.85 E-value=3.9e-09 Score=124.09 Aligned_cols=155 Identities=17% Similarity=0.200 Sum_probs=95.2
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcch----
Q 000728 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF---- 870 (1326)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F---- 870 (1326)
+.++|||.+++|||||++.++...+....+..+|..+....+.+. .-.+++|||||.-+-
T Consensus 169 rTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~dyk----------------YlrwQViDTPGILD~plEd 232 (620)
T KOG1490|consen 169 RTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDYK----------------YLRWQVIDTPGILDRPEED 232 (620)
T ss_pred CeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhhhhh----------------eeeeeecCCccccCcchhh
Confidence 349999999999999999999887766555555555443333333 334999999994332
Q ss_pred -hhh-hhh---ccCccceeEEeeccc--cCCchhH----HHHHHHHHhcCCcEEEEEeccccccCcccCCCchHHHHHHH
Q 000728 871 -TNL-RSR---GSGLCDIAILVVDIM--HGLEPQT----IESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQ 939 (1326)
Q Consensus 871 -~~l-r~r---g~~~aDiaILVVDa~--~Gv~~QT----~E~l~~l~~~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~ 939 (1326)
.++ +.. .+.+--.|+|++|.+ +|.+... ..+|.-| -.+.|+|+|+||||... ..++.
T Consensus 233 rN~IEmqsITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpL-FaNK~~IlvlNK~D~m~------~edL~----- 300 (620)
T KOG1490|consen 233 RNIIEMQIITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPL-FANKVTILVLNKIDAMR------PEDLD----- 300 (620)
T ss_pred hhHHHHHHHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHH-hcCCceEEEeecccccC------ccccC-----
Confidence 111 111 122233478888875 4544322 2222222 24789999999999873 12211
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHH
Q 000728 940 QNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1001 (1326)
Q Consensus 940 q~~~~~~e~~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~ 1001 (1326)
..-..++..+... +.++|+.+|+.+-+||.++-...+.
T Consensus 301 ----------~~~~~ll~~~~~~--------------~~v~v~~tS~~~eegVm~Vrt~ACe 338 (620)
T KOG1490|consen 301 ----------QKNQELLQTIIDD--------------GNVKVVQTSCVQEEGVMDVRTTACE 338 (620)
T ss_pred ----------HHHHHHHHHHHhc--------------cCceEEEecccchhceeeHHHHHHH
Confidence 1112333344333 3479999999999999887655443
No 310
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.84 E-value=1.1e-08 Score=111.80 Aligned_cols=102 Identities=17% Similarity=0.214 Sum_probs=62.9
Q ss_pred CCCEEEEeCCCCcchhhhhhhccCccceeEEeeccccCCchhHHHHHHHHHhcCCcE--EEEEeccccccCcccCCCchH
Q 000728 856 VPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEF--IVALNKVDRLYGWKTCRNAPI 933 (1326)
Q Consensus 856 ~~~I~IIDTPGhe~F~~lr~rg~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~vP~--IVvINKiD~~~~w~~~~~a~~ 933 (1326)
...++||.|.|.. ...... ...+|.+|+|||+.++...+.. . ..++.+ ++++||+|+... .
T Consensus 91 ~~D~iiIEt~G~~-l~~~~~--~~l~~~~i~vvD~~~~~~~~~~-~-----~~qi~~ad~~~~~k~d~~~~------~-- 153 (199)
T TIGR00101 91 PLEMVFIESGGDN-LSATFS--PELADLTIFVIDVAAGDKIPRK-G-----GPGITRSDLLVINKIDLAPM------V-- 153 (199)
T ss_pred CCCEEEEECCCCC-cccccc--hhhhCcEEEEEEcchhhhhhhh-h-----HhHhhhccEEEEEhhhcccc------c--
Confidence 4578999999931 111111 1236889999999886653211 1 123344 999999999621 0
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHH
Q 000728 934 VKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1326)
Q Consensus 934 ~~~L~~q~~~~~~e~~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~ 1002 (1326)
...+..+...+...+ ...++++|||++|+||.+|+++|..+
T Consensus 154 ---------------~~~~~~~~~~~~~~~-------------~~~~i~~~Sa~~g~gi~el~~~i~~~ 194 (199)
T TIGR00101 154 ---------------GADLGVMERDAKKMR-------------GEKPFIFTNLKTKEGLDTVIDWIEHY 194 (199)
T ss_pred ---------------cccHHHHHHHHHHhC-------------CCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 001122223333321 23689999999999999999998754
No 311
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=98.81 E-value=6.6e-08 Score=109.12 Aligned_cols=116 Identities=17% Similarity=0.080 Sum_probs=73.2
Q ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHcCccc-ccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcc
Q 000728 791 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES 869 (1326)
Q Consensus 791 ~~R~piV~IlGhvdaGKTTLLd~L~~~~v~-~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~ 869 (1326)
...++.|+|||.+|+|||||+|+|++..+. .+...+.|..+..+...+ ....|+||||||...
T Consensus 28 ~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~----------------~g~~i~vIDTPGl~~ 91 (249)
T cd01853 28 LDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTV----------------DGFKLNIIDTPGLLE 91 (249)
T ss_pred ccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEE----------------CCeEEEEEECCCcCc
Confidence 345567999999999999999999987643 223334444443322221 224599999999765
Q ss_pred hhh--h--------hhhccC--ccceeEEeecccc-CCchhHHHHHHHHHh-cC----CcEEEEEeccccc
Q 000728 870 FTN--L--------RSRGSG--LCDIAILVVDIMH-GLEPQTIESLNLLKM-RN----TEFIVALNKVDRL 922 (1326)
Q Consensus 870 F~~--l--------r~rg~~--~aDiaILVVDa~~-Gv~~QT~E~l~~l~~-~~----vP~IVvINKiD~~ 922 (1326)
+.. . ..+++. ..|++|+|..++. .+.......+..+.. .+ .++|||+|++|..
T Consensus 92 ~~~~~~~~~~~~~~I~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~ 162 (249)
T cd01853 92 SVMDQRVNRKILSSIKRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASS 162 (249)
T ss_pred chhhHHHHHHHHHHHHHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccC
Confidence 521 0 112332 4678888865553 344444455555443 22 4799999999986
No 312
>PTZ00258 GTP-binding protein; Provisional
Probab=98.80 E-value=5.5e-08 Score=115.63 Aligned_cols=99 Identities=15% Similarity=0.058 Sum_probs=64.2
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccch--hhhhhhccccccCCCCEEEEeCCCCcc
Q 000728 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIR--ERTRELKANATLKVPGLLVIDTPGHES 869 (1326)
Q Consensus 792 ~R~piV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~--~~~~~v~~~~~~~~~~I~IIDTPGhe~ 869 (1326)
.++..|+|+|.+++|||||+++|++..+..+..+++|.+.....+++...+ ..+.... ........|.|+||||...
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~-~~~~~~aqi~lvDtpGLv~ 97 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFK-PKSIVPAQLDITDIAGLVK 97 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcC-CcccCCCCeEEEECCCcCc
Confidence 345569999999999999999999888877777887755433333332211 1111111 1111123599999999432
Q ss_pred -------hhhhhhhccCccceeEEeeccc
Q 000728 870 -------FTNLRSRGSGLCDIAILVVDIM 891 (1326)
Q Consensus 870 -------F~~lr~rg~~~aDiaILVVDa~ 891 (1326)
..+.....++.||++|+|||+.
T Consensus 98 ga~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 98 GASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 2333345577899999999984
No 313
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=98.78 E-value=1.8e-07 Score=107.73 Aligned_cols=115 Identities=17% Similarity=0.099 Sum_probs=69.1
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCcccc-cccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcch
Q 000728 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQE-GEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF 870 (1326)
Q Consensus 792 ~R~piV~IlGhvdaGKTTLLd~L~~~~v~~-ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F 870 (1326)
...+.|+|||.+|+|||||+|+|++..+.. +...+.|.+...... .+.+..|+||||||..+.
T Consensus 36 ~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~----------------~~~G~~l~VIDTPGL~d~ 99 (313)
T TIGR00991 36 VSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSR----------------TRAGFTLNIIDTPGLIEG 99 (313)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEE----------------EECCeEEEEEECCCCCch
Confidence 456679999999999999999999877532 111111111100100 012345999999997754
Q ss_pred hhhhh-------hcc--CccceeEEeecccc-CCchhHHHHHHHHHhc-----CCcEEEEEeccccc
Q 000728 871 TNLRS-------RGS--GLCDIAILVVDIMH-GLEPQTIESLNLLKMR-----NTEFIVALNKVDRL 922 (1326)
Q Consensus 871 ~~lr~-------rg~--~~aDiaILVVDa~~-Gv~~QT~E~l~~l~~~-----~vP~IVvINKiD~~ 922 (1326)
..+.. .++ ..+|++|||+..+. .+.......+..+... -.++||++|..|..
T Consensus 100 ~~~~e~~~~~ik~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~ 166 (313)
T TIGR00991 100 GYINDQAVNIIKRFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFS 166 (313)
T ss_pred HHHHHHHHHHHHHHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccC
Confidence 22211 111 25899999965543 3443444444444332 25799999999976
No 314
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=98.73 E-value=2.5e-08 Score=113.83 Aligned_cols=167 Identities=19% Similarity=0.161 Sum_probs=85.7
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeee--------------eeEeccccchhh-hhhhc---cccc
Q 000728 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIG--------------ATYFPAENIRER-TRELK---ANAT 853 (1326)
Q Consensus 792 ~R~piV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~ig--------------a~~~~~~~~~~~-~~~v~---~~~~ 853 (1326)
....+|.|+|.+|+||||||.+|+..-.......-|.-+++ ...+....+... ...+. ....
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~VI~gD~~t~~Da~rI~~~g~pvvqi~tG~~Chl~a~mv~~Al~~L~ 181 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVIEGDQQTVNDAARIRATGTPAIQVNTGKGCHLDAQMIADAAPRLP 181 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhccCCCEEEECCCcCcHHHHHHHHhcCCcEEEecCCCCCcCcHHHHHHHHHHHh
Confidence 35667999999999999999988753211110000111110 111111000000 00000 0111
Q ss_pred cCCCCEEEEeCCCCcchhhhhhhccCccceeEEeeccccCCchhHHHHHHHHHhcCCcEEEEEeccccccCcccCCCchH
Q 000728 854 LKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPI 933 (1326)
Q Consensus 854 ~~~~~I~IIDTPGhe~F~~lr~rg~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~vP~IVvINKiD~~~~w~~~~~a~~ 933 (1326)
.....++||++-|.-..-.... + ..+.-|.|+++..|.. + .+.+-.....+-||+|||+|++.. ..
T Consensus 182 ~~~~d~liIEnvGnLvcPa~fd--l-ge~~~v~vlsV~eg~d-k---plKyp~~f~~ADIVVLNKiDLl~~------~~- 247 (290)
T PRK10463 182 LDDNGILFIENVGNLVCPASFD--L-GEKHKVAVLSVTEGED-K---PLKYPHMFAAASLMLLNKVDLLPY------LN- 247 (290)
T ss_pred hcCCcEEEEECCCCccCCCccc--h-hhceeEEEEECccccc-c---chhccchhhcCcEEEEEhHHcCcc------cH-
Confidence 2233688999988411111100 1 1123356677766632 1 112223345678999999999621 00
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHH
Q 000728 934 VKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1001 (1326)
Q Consensus 934 ~~~L~~q~~~~~~e~~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~ 1001 (1326)
..+..+...+... ....++|++||++|+|++.|+.||..
T Consensus 248 ----------------~dle~~~~~lr~l-------------np~a~I~~vSA~tGeGld~L~~~L~~ 286 (290)
T PRK10463 248 ----------------FDVEKCIACAREV-------------NPEIEIILISATSGEGMDQWLNWLET 286 (290)
T ss_pred ----------------HHHHHHHHHHHhh-------------CCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 1122233333322 13478999999999999999999865
No 315
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=98.69 E-value=3.3e-08 Score=110.09 Aligned_cols=173 Identities=22% Similarity=0.243 Sum_probs=89.6
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCcccccc------------c-Cc-----------eeeeeeeeEeccccchhhhhh
Q 000728 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGE------------A-GG-----------ITQQIGATYFPAENIRERTRE 847 (1326)
Q Consensus 792 ~R~piV~IlGhvdaGKTTLLd~L~~~~v~~ge------------~-gG-----------ITq~iga~~~~~~~~~~~~~~ 847 (1326)
-+.++|+|.|.+|+|||||++.|...-...+. . || ++.+.++|.-+..+.. ..-.
T Consensus 27 g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG-~lGG 105 (266)
T PF03308_consen 27 GRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRG-SLGG 105 (266)
T ss_dssp T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---S-SHHH
T ss_pred CCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCC-CCCC
Confidence 36778999999999999999999632111111 0 10 1112223322221110 0000
Q ss_pred hcc-------ccccCCCCEEEEeCCCCcchhhhhhhccCccceeEEeeccccCCchhHHHHHHHHHhcCCcEEEEEeccc
Q 000728 848 LKA-------NATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVD 920 (1326)
Q Consensus 848 v~~-------~~~~~~~~I~IIDTPGhe~F~~lr~rg~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~vP~IVvINKiD 920 (1326)
+.. -...-++.+.||-|-|.-.--. .....||.+|||+-...|-..|.+..- ++ .+.=||||||+|
T Consensus 106 ls~~t~~~v~ll~aaG~D~IiiETVGvGQsE~---~I~~~aD~~v~v~~Pg~GD~iQ~~KaG-im---EiaDi~vVNKaD 178 (266)
T PF03308_consen 106 LSRATRDAVRLLDAAGFDVIIIETVGVGQSEV---DIADMADTVVLVLVPGLGDEIQAIKAG-IM---EIADIFVVNKAD 178 (266)
T ss_dssp HHHHHHHHHHHHHHTT-SEEEEEEESSSTHHH---HHHTTSSEEEEEEESSTCCCCCTB-TT-HH---HH-SEEEEE--S
T ss_pred ccHhHHHHHHHHHHcCCCEEEEeCCCCCccHH---HHHHhcCeEEEEecCCCccHHHHHhhh-hh---hhccEEEEeCCC
Confidence 000 0012346799999998422211 134679999999998887766664321 11 125699999999
Q ss_pred cccCcccCCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHH
Q 000728 921 RLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLV 1000 (1326)
Q Consensus 921 ~~~~w~~~~~a~~~~~L~~q~~~~~~e~~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~ 1000 (1326)
+.. +. .+ ...+...|.... . ..-+...|++.|||.+|.||++|++.|.
T Consensus 179 ~~g-------A~----------~~-------~~~l~~~l~l~~-~-------~~~~W~ppV~~tsA~~~~Gi~eL~~~i~ 226 (266)
T PF03308_consen 179 RPG-------AD----------RT-------VRDLRSMLHLLR-E-------REDGWRPPVLKTSALEGEGIDELWEAID 226 (266)
T ss_dssp HHH-------HH----------HH-------HHHHHHHHHHCS-T-------SCTSB--EEEEEBTTTTBSHHHHHHHHH
T ss_pred hHH-------HH----------HH-------HHHHHHHHhhcc-c-------cccCCCCCEEEEEeCCCCCHHHHHHHHH
Confidence 752 11 01 112222222111 0 0112236999999999999999999987
Q ss_pred HHHH
Q 000728 1001 QWTQ 1004 (1326)
Q Consensus 1001 ~~~q 1004 (1326)
.+..
T Consensus 227 ~~~~ 230 (266)
T PF03308_consen 227 EHRD 230 (266)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7543
No 316
>cd03701 IF2_IF5B_II IF2_IF5B_II: This family represents the domain II of prokaryotic Initiation Factor 2 (IF2) and its archeal and eukaryotic homologue aeIF5B. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of the 60S ribosomal subunit. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains in EF1A, eEF1A and aeIF2gamma.
Probab=98.68 E-value=8.4e-08 Score=92.63 Aligned_cols=88 Identities=28% Similarity=0.478 Sum_probs=68.4
Q ss_pred ceeEEEEEEEeCceeEEEEEEEeeEecCCCEEEEccCCCceeeeeeeccCCCCCceeeecceeecccccc-cccceeeec
Q 000728 1018 QCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIK-AAQGIKITA 1096 (1326)
Q Consensus 1018 ~~~VlEvk~~~G~Gtvi~giV~~G~Lr~GD~IVl~g~~g~~~~~IR~Ll~p~p~~e~rVk~~~~~~k~v~-aa~gv~i~~ 1096 (1326)
+++|+|++..+|+|++++++|++|+|++||.|+++ ..+.+||+|++... +.+. +.++..+.+
T Consensus 2 ~g~ViE~~~~~g~G~vatviV~~GtL~~Gd~iv~G----~~~GkVr~~~d~~g-------------~~v~~a~Ps~~v~i 64 (95)
T cd03701 2 EGTVIESKLDKGRGPVATVIVQNGTLKKGDVIVAG----GTYGKIRTMVDENG-------------KALLEAGPSTPVEI 64 (95)
T ss_pred eEEEEEEEecCCCCeeEEEEEEcCeEecCCEEEEC----CccceEEEEECCCC-------------CCccccCCCCCEEE
Confidence 68999999999999999999999999999988763 34678898887552 1222 223444566
Q ss_pred ccccc-ccCCCceEEcCCcchHHHHHH
Q 000728 1097 QGLEH-AIAGTGLYVVGPDDDLEDVKE 1122 (1326)
Q Consensus 1097 ~gl~~-~~aG~~~~v~~~~~~~~~~~~ 1122 (1326)
.||.. +.+|+.|+++.++.++..+..
T Consensus 65 ~g~~~~p~aGd~~~~~~~e~~a~~~~~ 91 (95)
T cd03701 65 LGLKDVPKAGDGVLVVASEKEAKEIGS 91 (95)
T ss_pred eeecCCccCCCEEEEeCCCHHHHHhhH
Confidence 68877 789999999999987765543
No 317
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=98.67 E-value=1.7e-07 Score=107.58 Aligned_cols=137 Identities=22% Similarity=0.308 Sum_probs=79.0
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCccccccc--C----c--eeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCC
Q 000728 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEA--G----G--ITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPG 866 (1326)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~~~v~~ge~--g----G--ITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPG 866 (1326)
..|.|+|..|+|||||++.|....+..... . . -+..+....+.... . .. ...|+||||||
T Consensus 5 fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e---~------~~---~l~LtiiDTpG 72 (281)
T PF00735_consen 5 FNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEE---N------GV---KLNLTIIDTPG 72 (281)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEE---T------CE---EEEEEEEEEC-
T ss_pred EEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEecc---C------Cc---ceEEEEEeCCC
Confidence 469999999999999999999876543210 0 0 01111111111100 0 00 12499999999
Q ss_pred Ccchhhh------------------hh------h---ccCccceeEEeeccc-cCCchhHHHHHHHHHhcCCcEEEEEec
Q 000728 867 HESFTNL------------------RS------R---GSGLCDIAILVVDIM-HGLEPQTIESLNLLKMRNTEFIVALNK 918 (1326)
Q Consensus 867 he~F~~l------------------r~------r---g~~~aDiaILVVDa~-~Gv~~QT~E~l~~l~~~~vP~IVvINK 918 (1326)
+.+..+. .. | .-...|+||++|+++ +|+.+..++.|+.|... +++|.||.|
T Consensus 73 fGd~i~n~~~~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~Ls~~-vNvIPvIaK 151 (281)
T PF00735_consen 73 FGDNIDNSDCWEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRLSKR-VNVIPVIAK 151 (281)
T ss_dssp CSSSSTHCHHHHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHHTTT-SEEEEEEST
T ss_pred ccccccchhhhHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHhccc-ccEEeEEec
Confidence 6542111 00 1 112378999999985 79999999999888665 899999999
Q ss_pred cccccCcccCCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCc
Q 000728 919 VDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMN 965 (1326)
Q Consensus 919 iD~~~~w~~~~~a~~~~~L~~q~~~~~~e~~~~l~~I~~~L~e~Gl~ 965 (1326)
.|.+. ..++......|...|..+++.
T Consensus 152 aD~lt---------------------~~el~~~k~~i~~~l~~~~I~ 177 (281)
T PF00735_consen 152 ADTLT---------------------PEELQAFKQRIREDLEENNIK 177 (281)
T ss_dssp GGGS----------------------HHHHHHHHHHHHHHHHHTT--
T ss_pred ccccC---------------------HHHHHHHHHHHHHHHHHcCce
Confidence 99872 122333345667777777654
No 318
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.65 E-value=1.3e-07 Score=106.49 Aligned_cols=177 Identities=20% Similarity=0.227 Sum_probs=100.0
Q ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHcCcccccc-------------cCc-----------eeeeeeeeEeccccchh---
Q 000728 791 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGE-------------AGG-----------ITQQIGATYFPAENIRE--- 843 (1326)
Q Consensus 791 ~~R~piV~IlGhvdaGKTTLLd~L~~~~v~~ge-------------~gG-----------ITq~iga~~~~~~~~~~--- 843 (1326)
--|+++|+|.|.+|+|||||++.|...-+..|. .|| ++.+.++|.-+..+...
T Consensus 48 tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lGG 127 (323)
T COG1703 48 TGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLGG 127 (323)
T ss_pred CCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccchh
Confidence 357789999999999999999999532111111 111 23344555444322110
Q ss_pred ---hhhhhccccccCCCCEEEEeCCCCcchhhhhhhccCccceeEEeeccccCCchhHHHHHHHHHhcCCcEEEEEeccc
Q 000728 844 ---RTRELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVD 920 (1326)
Q Consensus 844 ---~~~~v~~~~~~~~~~I~IIDTPGhe~F~~lr~rg~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~vP~IVvINKiD 920 (1326)
.+..+-.-..--++.+.||-|-|.-.--. -....+|++|+|.=..-|-..|.+..= .+.+-=||||||.|
T Consensus 128 lS~at~~~i~~ldAaG~DvIIVETVGvGQsev---~I~~~aDt~~~v~~pg~GD~~Q~iK~G----imEiaDi~vINKaD 200 (323)
T COG1703 128 LSRATREAIKLLDAAGYDVIIVETVGVGQSEV---DIANMADTFLVVMIPGAGDDLQGIKAG----IMEIADIIVINKAD 200 (323)
T ss_pred hhHHHHHHHHHHHhcCCCEEEEEecCCCcchh---HHhhhcceEEEEecCCCCcHHHHHHhh----hhhhhheeeEeccC
Confidence 00000000011245699999998422211 123468999999877777777776531 12234589999999
Q ss_pred cccCcccCCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHH
Q 000728 921 RLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLV 1000 (1326)
Q Consensus 921 ~~~~w~~~~~a~~~~~L~~q~~~~~~e~~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~ 1000 (1326)
+.. +.. ... .+...|... . ..|.. .+...|++.|||.+|+||++|++.|.
T Consensus 201 ~~~-------A~~----------a~r-------~l~~al~~~---~-~~~~~--~~W~ppv~~t~A~~g~Gi~~L~~ai~ 250 (323)
T COG1703 201 RKG-------AEK----------AAR-------ELRSALDLL---R-EVWRE--NGWRPPVVTTSALEGEGIDELWDAIE 250 (323)
T ss_pred hhh-------HHH----------HHH-------HHHHHHHhh---c-ccccc--cCCCCceeEeeeccCCCHHHHHHHHH
Confidence 752 110 111 111111110 0 11222 23346999999999999999999998
Q ss_pred HHHH
Q 000728 1001 QWTQ 1004 (1326)
Q Consensus 1001 ~~~q 1004 (1326)
.+..
T Consensus 251 ~h~~ 254 (323)
T COG1703 251 DHRK 254 (323)
T ss_pred HHHH
Confidence 7654
No 319
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=98.65 E-value=4.8e-08 Score=117.33 Aligned_cols=118 Identities=16% Similarity=0.173 Sum_probs=77.5
Q ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcch
Q 000728 791 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF 870 (1326)
Q Consensus 791 ~~R~piV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F 870 (1326)
.++...|+|+|.-|+|||||+-.|+...+... |...+--+.+|.+.. -....++|+||+-...-
T Consensus 6 t~kdVRIvliGD~G~GKtSLImSL~~eef~~~----VP~rl~~i~IPadvt------------Pe~vpt~ivD~ss~~~~ 69 (625)
T KOG1707|consen 6 TLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDA----VPRRLPRILIPADVT------------PENVPTSIVDTSSDSDD 69 (625)
T ss_pred CccceEEEEECCCCccHHHHHHHHHhhhcccc----ccccCCccccCCccC------------cCcCceEEEecccccch
Confidence 35566699999999999999999997665432 111111122222111 01123899999976655
Q ss_pred hhhhhhccCccceeEEeecccc-----CCchhHHHHHHHHHh--cCCcEEEEEeccccccC
Q 000728 871 TNLRSRGSGLCDIAILVVDIMH-----GLEPQTIESLNLLKM--RNTEFIVALNKVDRLYG 924 (1326)
Q Consensus 871 ~~lr~rg~~~aDiaILVVDa~~-----Gv~~QT~E~l~~l~~--~~vP~IVvINKiD~~~~ 924 (1326)
......-++.+|++++|++.++ +++.-++.+++.+.. .++|+|+|.||+|...+
T Consensus 70 ~~~l~~EirkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~ 130 (625)
T KOG1707|consen 70 RLCLRKEIRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDN 130 (625)
T ss_pred hHHHHHHHhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccc
Confidence 5555667889999999998876 344444444444431 46899999999998754
No 320
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=98.64 E-value=4.2e-08 Score=104.74 Aligned_cols=163 Identities=20% Similarity=0.191 Sum_probs=88.2
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchh----h-----hh-hhccc------------c
Q 000728 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRE----R-----TR-ELKAN------------A 852 (1326)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~----~-----~~-~v~~~------------~ 852 (1326)
..|.|+|++||||||||.+++..-.......-||.++.+.... ..++. + |. .++.+ .
T Consensus 14 ~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t~~Da-~~l~~~~g~~i~~v~TG~~CH~da~m~~~ai~~l~~ 92 (202)
T COG0378 14 LRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYTKEDA-DRLRKLPGEPIIGVETGKGCHLDASMNLEAIEELVL 92 (202)
T ss_pred EEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEeceeechhhH-HHHHhCCCCeeEEeccCCccCCcHHHHHHHHHHHhh
Confidence 5699999999999999999875432223333344444321000 00000 0 00 01000 0
Q ss_pred ccCCCCEEEEeCCCCcchhhhhhhccCccc-eeEEeeccccCCchhHHHHHHHHHhcCCcEEEEEeccccccCcccCCCc
Q 000728 853 TLKVPGLLVIDTPGHESFTNLRSRGSGLCD-IAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNA 931 (1326)
Q Consensus 853 ~~~~~~I~IIDTPGhe~F~~lr~rg~~~aD-iaILVVDa~~Gv~~QT~E~l~~l~~~~vP~IVvINKiD~~~~w~~~~~a 931 (1326)
.+..-.++||-+.| +.....+ ..+.| +-|+|||...|....-.-.=.+ . .-=|+||||+|+... .
T Consensus 93 ~~~~~Dll~iEs~G--NL~~~~s--p~L~d~~~v~VidvteGe~~P~K~gP~i---~-~aDllVInK~DLa~~------v 158 (202)
T COG0378 93 DFPDLDLLFIESVG--NLVCPFS--PDLGDHLRVVVIDVTEGEDIPRKGGPGI---F-KADLLVINKTDLAPY------V 158 (202)
T ss_pred cCCcCCEEEEecCc--ceecccC--cchhhceEEEEEECCCCCCCcccCCCce---e-EeeEEEEehHHhHHH------h
Confidence 11123689999998 2221111 22345 8899999998753211100000 0 124789999999731 1
Q ss_pred hHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHH
Q 000728 932 PIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1326)
Q Consensus 932 ~~~~~L~~q~~~~~~e~~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~ 1002 (1326)
. ..+........+ +.+..+||++|++||+|+.+++.||..+
T Consensus 159 ~-----------------~dlevm~~da~~-------------~np~~~ii~~n~ktg~G~~~~~~~i~~~ 199 (202)
T COG0378 159 G-----------------ADLEVMARDAKE-------------VNPEAPIIFTNLKTGEGLDEWLRFIEPQ 199 (202)
T ss_pred C-----------------ccHHHHHHHHHH-------------hCCCCCEEEEeCCCCcCHHHHHHHHHhh
Confidence 1 111111111211 2366899999999999999999888643
No 321
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.63 E-value=9e-08 Score=100.86 Aligned_cols=155 Identities=19% Similarity=0.187 Sum_probs=105.3
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchhhh
Q 000728 794 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL 873 (1326)
Q Consensus 794 ~piV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~~l 873 (1326)
...++++|..|+||||++.+.+...+....... +|....++.... +.....++.|||.|++.|..+
T Consensus 10 ~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at----~Gv~~~pl~f~t----------n~g~irf~~wdtagqEk~ggl 75 (216)
T KOG0096|consen 10 TFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPAT----LGVEVHPLLFDT----------NRGQIRFNVWDTAGQEKKGGL 75 (216)
T ss_pred eEEEEEecCCcccccchhhhhhcccceecccCc----ceeEEeeeeeec----------ccCcEEEEeeecccceeeccc
Confidence 345899999999999999999877665432222 222222221100 011124999999999999999
Q ss_pred hhhccCccceeEEeeccccCCchhHHHHHH--HHHh-cCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHHHHHH
Q 000728 874 RSRGSGLCDIAILVVDIMHGLEPQTIESLN--LLKM-RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 950 (1326)
Q Consensus 874 r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~--~l~~-~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~e~~~ 950 (1326)
+..++-..-.+|+++|....++.+....|. +++. .++|||+|.||+|.... .
T Consensus 76 rdgyyI~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~~NiPiv~cGNKvDi~~r-----~-------------------- 130 (216)
T KOG0096|consen 76 RDGYYIQGQCAIIMFDVTSRFTYKNVPRWHRDLVRVRENIPIVLCGNKVDIKAR-----K-------------------- 130 (216)
T ss_pred ccccEEecceeEEEeeeeehhhhhcchHHHHHHHHHhcCCCeeeeccceecccc-----c--------------------
Confidence 998888889999999998877766655553 2332 36899999999997420 0
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHH
Q 000728 951 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1326)
Q Consensus 951 ~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~ 1002 (1326)
.....+ .+ ....++.++.+||+++.|...-|.+|...
T Consensus 131 --------~k~k~v---~~----~rkknl~y~~iSaksn~NfekPFl~LarK 167 (216)
T KOG0096|consen 131 --------VKAKPV---SF----HRKKNLQYYEISAKSNYNFERPFLWLARK 167 (216)
T ss_pred --------cccccc---ee----eecccceeEEeecccccccccchHHHhhh
Confidence 000000 01 12356799999999999999888887653
No 322
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=98.60 E-value=4.7e-07 Score=99.84 Aligned_cols=110 Identities=25% Similarity=0.230 Sum_probs=68.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCcccccc--cCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcch---
Q 000728 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGE--AGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF--- 870 (1326)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~~~v~~ge--~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F--- 870 (1326)
.|+|||..|+|||||+|.|++..+.... ..++|+........ +.+..|+||||||..+-
T Consensus 2 ~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~----------------~~g~~v~VIDTPGl~d~~~~ 65 (212)
T PF04548_consen 2 RILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGE----------------VDGRQVTVIDTPGLFDSDGS 65 (212)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEE----------------ETTEEEEEEE--SSEETTEE
T ss_pred EEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeee----------------ecceEEEEEeCCCCCCCccc
Confidence 4899999999999999999988764322 23344443333222 22345999999995432
Q ss_pred ----hhhhh----hccCccceeEEeeccccCCchhHHHHHHHHHhc-C----CcEEEEEeccccc
Q 000728 871 ----TNLRS----RGSGLCDIAILVVDIMHGLEPQTIESLNLLKMR-N----TEFIVALNKVDRL 922 (1326)
Q Consensus 871 ----~~lr~----rg~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~-~----vP~IVvINKiD~~ 922 (1326)
..... ......+++|||+... .++......|..+... + ..+||++|..|.+
T Consensus 66 ~~~~~~~i~~~l~~~~~g~ha~llVi~~~-r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~ 129 (212)
T PF04548_consen 66 DEEIIREIKRCLSLCSPGPHAFLLVIPLG-RFTEEDREVLELLQEIFGEEIWKHTIVVFTHADEL 129 (212)
T ss_dssp HHHHHHHHHHHHHHTTT-ESEEEEEEETT-B-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGG
T ss_pred HHHHHHHHHHHHHhccCCCeEEEEEEecC-cchHHHHHHHHHHHHHccHHHHhHhhHHhhhcccc
Confidence 11111 2345689999999988 6776667676665532 2 3588999999976
No 323
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=98.58 E-value=5e-07 Score=92.12 Aligned_cols=117 Identities=22% Similarity=0.156 Sum_probs=81.8
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCcccccccCcee-eeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcch-
Q 000728 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGIT-QQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF- 870 (1326)
Q Consensus 793 R~piV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGIT-q~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F- 870 (1326)
+.-.|++||.-++|||.||..|+..+...+..--.| -+|....+.+... -...+.|.||.|...+
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rg-------------arE~l~lyDTaGlq~~~ 74 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRG-------------AREQLRLYDTAGLQGGQ 74 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCC-------------hhheEEEeecccccCch
Confidence 344699999999999999999998876544322122 2333333322210 0124899999998888
Q ss_pred hhhhhhccCccceeEEeeccccCCchhHHHHHHHHHh-----cCCcEEEEEeccccc
Q 000728 871 TNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKM-----RNTEFIVALNKVDRL 922 (1326)
Q Consensus 871 ~~lr~rg~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~-----~~vP~IVvINKiD~~ 922 (1326)
..+-..+++.+|+.|||++.++.-..|-.+.|..-.. ..+||||..|++|+.
T Consensus 75 ~eLprhy~q~aDafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~ 131 (198)
T KOG3883|consen 75 QELPRHYFQFADAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRA 131 (198)
T ss_pred hhhhHhHhccCceEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcc
Confidence 6666778999999999999998666666655543222 248999999999985
No 324
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.56 E-value=5.7e-07 Score=102.62 Aligned_cols=135 Identities=21% Similarity=0.279 Sum_probs=87.9
Q ss_pred cccCCCCCEEEEEeCCCCCHHHHHHHHHcCcccccccCc--eeeeeeeeE------------------eccccchhhhhh
Q 000728 788 AEENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGG--ITQQIGATY------------------FPAENIRERTRE 847 (1326)
Q Consensus 788 ~~~~~R~piV~IlGhvdaGKTTLLd~L~~~~v~~ge~gG--ITq~iga~~------------------~~~~~~~~~~~~ 847 (1326)
+++---.|.|.+||+-.+||||+|++|+.+.+..-..|. .|..+.+.. .|+..+...+..
T Consensus 52 d~dfd~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~a 131 (532)
T KOG1954|consen 52 DPDFDAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNA 131 (532)
T ss_pred CcccccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHH
Confidence 344456688999999999999999999987655222110 111111100 000000000000
Q ss_pred hcc---ccccC---CCCEEEEeCCCC-----------cchhhhhhhccCccceeEEeecccc-CCchhHHHHHHHHHhcC
Q 000728 848 LKA---NATLK---VPGLLVIDTPGH-----------ESFTNLRSRGSGLCDIAILVVDIMH-GLEPQTIESLNLLKMRN 909 (1326)
Q Consensus 848 v~~---~~~~~---~~~I~IIDTPGh-----------e~F~~lr~rg~~~aDiaILVVDa~~-Gv~~QT~E~l~~l~~~~ 909 (1326)
+.. ...++ ...|+||||||. .+|+......+..||++||++|+.. .+.+.+.++|..|+.+.
T Consensus 132 flnRf~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~E 211 (532)
T KOG1954|consen 132 FLNRFMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGHE 211 (532)
T ss_pred HHHHHHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCCc
Confidence 000 00111 236999999994 3466667777888999999999975 47889999999999998
Q ss_pred CcEEEEEeccccc
Q 000728 910 TEFIVALNKVDRL 922 (1326)
Q Consensus 910 vP~IVvINKiD~~ 922 (1326)
-.+-||+||.|.+
T Consensus 212 dkiRVVLNKADqV 224 (532)
T KOG1954|consen 212 DKIRVVLNKADQV 224 (532)
T ss_pred ceeEEEecccccc
Confidence 8999999999987
No 325
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=98.55 E-value=2.9e-07 Score=108.01 Aligned_cols=121 Identities=21% Similarity=0.252 Sum_probs=75.9
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcC----ccc------------ccccCceeeee-eeeEeccccchhhhhhhccccccCCC
Q 000728 795 PICCIMGHVDTGKTKLLDCIRGT----NVQ------------EGEAGGITQQI-GATYFPAENIRERTRELKANATLKVP 857 (1326)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~~----~v~------------~ge~gGITq~i-ga~~~~~~~~~~~~~~v~~~~~~~~~ 857 (1326)
+.|+|+|++++|||||+++|.+. ++. .....|-|... -..++|.... .+..... -..
T Consensus 18 IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAv-----EI~~~~~-~~~ 91 (492)
T TIGR02836 18 IYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAV-----EININEG-TKF 91 (492)
T ss_pred EEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcce-----EEeccCC-Ccc
Confidence 34999999999999999999987 443 11223311110 0112222211 1111100 013
Q ss_pred CEEEEeCCCCcchhh---h--------------------------hhhccC-ccceeEEee-ccc------cCCchhHHH
Q 000728 858 GLLVIDTPGHESFTN---L--------------------------RSRGSG-LCDIAILVV-DIM------HGLEPQTIE 900 (1326)
Q Consensus 858 ~I~IIDTPGhe~F~~---l--------------------------r~rg~~-~aDiaILVV-Da~------~Gv~~QT~E 900 (1326)
.+.||||+|+..-.. + +...+. .+|++|||. |++ ++.......
T Consensus 92 ~VrlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~ 171 (492)
T TIGR02836 92 KVRLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEER 171 (492)
T ss_pred cEEEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHH
Confidence 599999999533111 1 122344 799999999 775 445666778
Q ss_pred HHHHHHhcCCcEEEEEecccc
Q 000728 901 SLNLLKMRNTEFIVALNKVDR 921 (1326)
Q Consensus 901 ~l~~l~~~~vP~IVvINKiD~ 921 (1326)
.+..|+..++|||+++|++|-
T Consensus 172 ~i~eLk~~~kPfiivlN~~dp 192 (492)
T TIGR02836 172 VIEELKELNKPFIILLNSTHP 192 (492)
T ss_pred HHHHHHhcCCCEEEEEECcCC
Confidence 889999999999999999994
No 326
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.53 E-value=5.9e-07 Score=103.91 Aligned_cols=115 Identities=25% Similarity=0.393 Sum_probs=76.9
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCcccccc------c----CceeeeeeeeEeccccchhhhhhhccccccCCCCEEEE
Q 000728 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGE------A----GGITQQIGATYFPAENIRERTRELKANATLKVPGLLVI 862 (1326)
Q Consensus 793 R~piV~IlGhvdaGKTTLLd~L~~~~v~~ge------~----gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~II 862 (1326)
.+.+|.++|..|+|||||++.|+++.+.... + .++...+....+.-+.. .-.|++|
T Consensus 22 i~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~--------------~~~l~vI 87 (373)
T COG5019 22 IDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGF--------------HLNLTVI 87 (373)
T ss_pred CceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCe--------------EEEEEEe
Confidence 4567999999999999999999987554331 1 11122222222211111 1249999
Q ss_pred eCCCCcchhhhhh------------------------hc----cCccceeEEeecc-ccCCchhHHHHHHHHHhcCCcEE
Q 000728 863 DTPGHESFTNLRS------------------------RG----SGLCDIAILVVDI-MHGLEPQTIESLNLLKMRNTEFI 913 (1326)
Q Consensus 863 DTPGhe~F~~lr~------------------------rg----~~~aDiaILVVDa-~~Gv~~QT~E~l~~l~~~~vP~I 913 (1326)
||||+-+|..... |. =...++||++|-. .||+.+..++.+..+... |.+|
T Consensus 88 DtpGfGD~idNs~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk~ls~~-vNlI 166 (373)
T COG5019 88 DTPGFGDFIDNSKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMKRLSKR-VNLI 166 (373)
T ss_pred ccCCccccccccccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHHHHHhcc-cCee
Confidence 9999766532200 11 1126789999986 589999999999887554 7899
Q ss_pred EEEeccccc
Q 000728 914 VALNKVDRL 922 (1326)
Q Consensus 914 VvINKiD~~ 922 (1326)
-||-|.|.+
T Consensus 167 PVI~KaD~l 175 (373)
T COG5019 167 PVIAKADTL 175 (373)
T ss_pred eeeeccccC
Confidence 999999987
No 327
>PF14578 GTP_EFTU_D4: Elongation factor Tu domain 4; PDB: 1G7R_A 1G7S_A 1G7T_A 1XE1_A.
Probab=98.45 E-value=2.3e-07 Score=86.27 Aligned_cols=60 Identities=27% Similarity=0.461 Sum_probs=49.8
Q ss_pred eccceeeeecccccCCCCCeEEEEEEeeeEEeeCCeeEEEEecCCeEEEEEeeeeeeeeecccccCccccCC
Q 000728 1252 VFPCVLKILPNCVFNKKDPIVLGVDVVEGIAKVRMLELQFVFPKGILLILAELRLLKITINPLILPRKARKQ 1323 (1326)
Q Consensus 1252 v~p~~l~i~~~~vf~~k~~~IaG~~V~~G~lk~gt~i~~~v~r~g~~i~~g~i~slk~~k~~~~~~~~~~~~ 1323 (1326)
+-||.|+|+|.|+|+.++ +|+| .|+.|+|++|+|| +|.. .|.|.|+++.. .+++..++||
T Consensus 2 ~~p~ki~Ilp~~vFr~~~-~IvG-~V~~G~ik~G~~l------~G~~--iG~I~sIe~~~--k~v~~A~~G~ 61 (81)
T PF14578_consen 2 VRPGKIRILPVCVFRQSD-AIVG-EVLEGIIKPGYPL------DGRK--IGRIKSIEDNG--KNVDEAKKGD 61 (81)
T ss_dssp S-SEEEEEEEEEEECTCC-EEEE-EEEEEEEETT-EE------CSSC--EEEEEEEEETT--EEESEEETT-
T ss_pred CCceEEEECCcCEEecCC-eEEE-EEeeeEEeCCCcc------CCEE--EEEEEEeEECC--cCccccCCCC
Confidence 358999999999999999 9999 9999999999997 8865 88888877655 5777788876
No 328
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.41 E-value=8.4e-07 Score=92.57 Aligned_cols=95 Identities=19% Similarity=0.147 Sum_probs=67.3
Q ss_pred hhhhhhhccCccceeEEeeccccCCchhHHHHHHHHHhcCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHHHHH
Q 000728 870 FTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 949 (1326)
Q Consensus 870 F~~lr~rg~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~e~~ 949 (1326)
|..++.+.+..+|++|+|+|+.++...+....+.++...+.|+|+|+||+|+... . .
T Consensus 2 ~~~~~~~i~~~aD~vl~V~D~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~-------~---~------------- 58 (156)
T cd01859 2 WKRLVRRIIKESDVVLEVLDARDPELTRSRKLERYVLELGKKLLIVLNKADLVPK-------E---V------------- 58 (156)
T ss_pred HHHHHHHHHhhCCEEEEEeeCCCCcccCCHHHHHHHHhCCCcEEEEEEhHHhCCH-------H---H-------------
Confidence 4556677788899999999998877766666666666678999999999998520 0 0
Q ss_pred HHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHHHH
Q 000728 950 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1004 (1326)
Q Consensus 950 ~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~q 1004 (1326)
..... .+... ...++|++||++|.|+..|+..|..+++
T Consensus 59 --~~~~~-~~~~~--------------~~~~~~~iSa~~~~gi~~L~~~l~~~~~ 96 (156)
T cd01859 59 --LEKWK-SIKES--------------EGIPVVYVSAKERLGTKILRRTIKELAK 96 (156)
T ss_pred --HHHHH-HHHHh--------------CCCcEEEEEccccccHHHHHHHHHHHHh
Confidence 00000 01000 1247899999999999999998876653
No 329
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=98.41 E-value=6.4e-08 Score=101.45 Aligned_cols=157 Identities=20% Similarity=0.152 Sum_probs=103.7
Q ss_pred EEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchhhhhhh
Q 000728 797 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSR 876 (1326)
Q Consensus 797 V~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~~lr~r 876 (1326)
+.|+|.-++|||+++.+.++.++.......|..+.....+.|+. .....+.|||..|++.|.+|..-
T Consensus 28 ~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd-------------~t~vRlqLwdIagQerfg~mtrV 94 (229)
T KOG4423|consen 28 VLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDD-------------KTIVRLQLWDIAGQERFGNMTRV 94 (229)
T ss_pred hheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccCh-------------HHHHHHHHhcchhhhhhcceEEE
Confidence 88999999999999999988776533322222222211222221 11224889999999999999999
Q ss_pred ccCccceeEEeeccccCCchhHHHHHHHHHh--------cCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHHHH
Q 000728 877 GSGLCDIAILVVDIMHGLEPQTIESLNLLKM--------RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEF 948 (1326)
Q Consensus 877 g~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~--------~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~e~ 948 (1326)
+++.+.++++|+|.+...+......|..-.. .-+|+|+..||||.... +..
T Consensus 95 yykea~~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~------a~~--------------- 153 (229)
T KOG4423|consen 95 YYKEAHGAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKS------AKN--------------- 153 (229)
T ss_pred EecCCcceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChH------hhh---------------
Confidence 9999999999999998765444333432211 13578999999997521 100
Q ss_pred HHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHH
Q 000728 949 NMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1326)
Q Consensus 949 ~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~ 1002 (1326)
..-..+.+...++| +.-++.||++.+.+|++....|+..
T Consensus 154 -~~~~~~d~f~keng--------------f~gwtets~Kenkni~Ea~r~lVe~ 192 (229)
T KOG4423|consen 154 -EATRQFDNFKKENG--------------FEGWTETSAKENKNIPEAQRELVEK 192 (229)
T ss_pred -hhHHHHHHHHhccC--------------ccceeeeccccccChhHHHHHHHHH
Confidence 00011222233333 3578999999999999988877753
No 330
>cd03692 mtIF2_IVc mtIF2_IVc: this family represents the C2 subdomain of domain IV of mitochondrial translation initiation factor 2 (mtIF2) which adopts a beta-barrel fold displaying a high degree of structural similarity with domain II of the translation elongation factor EF-Tu. The C-terminal part of mtIF2 contains the entire fMet-tRNAfmet binding site of IF-2 and is resistant to proteolysis. This C-terminal portion consists of two domains, IF2 C1 and IF2 C2. IF2 C2 been shown to contain all molecular determinants necessary and sufficient for the recognition and binding of fMet-tRNAfMet. Like IF2 from certain prokaryotes such as Thermus thermophilus, mtIF2lacks domain II which is thought to be involved in binding of E.coli IF-2 to 30S subunits.
Probab=98.36 E-value=1.2e-06 Score=82.85 Aligned_cols=56 Identities=20% Similarity=0.182 Sum_probs=47.7
Q ss_pred ccC-CCCCeEEEEEEeeeEEeeCCeeEEEEecCCeEEEEEeeeeeeeeecccccCccccCC
Q 000728 1264 VFN-KKDPIVLGVDVVEGIAKVRMLELQFVFPKGILLILAELRLLKITINPLILPRKARKQ 1323 (1326)
Q Consensus 1264 vf~-~k~~~IaG~~V~~G~lk~gt~i~~~v~r~g~~i~~g~i~slk~~k~~~~~~~~~~~~ 1323 (1326)
+|+ ++.+.||||+|++|.|++|+.| +++|+|.++|.|+|.||+|+++.+ +.++.|+
T Consensus 8 vf~~~~~g~vag~kV~~G~l~~g~~v--~vlr~~~~~~~g~i~sl~~~~~~v--~~a~~G~ 64 (84)
T cd03692 8 VFKISKVGNIAGCYVTDGKIKRNAKV--RVLRNGEVIYEGKISSLKRFKDDV--KEVKKGY 64 (84)
T ss_pred EEECCCCcEEEEEEEEECEEeCCCEE--EEEcCCCEEEEEEEEEEEEcCccc--CEECCCC
Confidence 554 3457899999999999999998 799999999999999999998854 4566665
No 331
>PRK14974 cell division protein FtsY; Provisional
Probab=98.34 E-value=1.1e-06 Score=103.00 Aligned_cols=65 Identities=23% Similarity=0.155 Sum_probs=38.6
Q ss_pred CCCEEEEeCCCCcchhhh----hhh--ccCccceeEEeeccccCCchhHHHHHHHHHhcCCcEEEEEeccccc
Q 000728 856 VPGLLVIDTPGHESFTNL----RSR--GSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRL 922 (1326)
Q Consensus 856 ~~~I~IIDTPGhe~F~~l----r~r--g~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~vP~IVvINKiD~~ 922 (1326)
...+.||||||....... ... ....+|.++||+|++.|- ...+.+......--+--|++||+|..
T Consensus 222 ~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~--d~~~~a~~f~~~~~~~giIlTKlD~~ 292 (336)
T PRK14974 222 GIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGN--DAVEQAREFNEAVGIDGVILTKVDAD 292 (336)
T ss_pred CCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccch--hHHHHHHHHHhcCCCCEEEEeeecCC
Confidence 356999999996543211 111 123578999999997652 33333333222112356789999975
No 332
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=98.31 E-value=2.9e-06 Score=86.79 Aligned_cols=168 Identities=17% Similarity=0.184 Sum_probs=106.1
Q ss_pred ccccCCCCCEEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCC
Q 000728 787 QAEENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPG 866 (1326)
Q Consensus 787 ~~~~~~R~piV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPG 866 (1326)
.+..++=+..|+++|....|||||+-.+.+...... .|+..|..+..... .-+... -.+.|||..|
T Consensus 13 ~a~~n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~----~~q~~GvN~mdkt~-~i~~t~---------IsfSIwdlgG 78 (205)
T KOG1673|consen 13 PAVSNLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEE----YTQTLGVNFMDKTV-SIRGTD---------ISFSIWDLGG 78 (205)
T ss_pred cccccceEEEEEeecccccCceeeehhhhcchhHHH----HHHHhCccceeeEE-EecceE---------EEEEEEecCC
Confidence 333455566799999999999999999987654321 24444433332110 000000 1388999999
Q ss_pred CcchhhhhhhccCccceeEEeeccccCCchhHH-HHHHHHHhcCC--cEEEEEeccccccCcccCCCchHHHHHHHhhHH
Q 000728 867 HESFTNLRSRGSGLCDIAILVVDIMHGLEPQTI-ESLNLLKMRNT--EFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTD 943 (1326)
Q Consensus 867 he~F~~lr~rg~~~aDiaILVVDa~~Gv~~QT~-E~l~~l~~~~v--P~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~ 943 (1326)
++.|.+|.......+-++|+++|.+...+...+ ++.++++..+. -.|++.+|.|..-.. ..++...+..
T Consensus 79 ~~~~~n~lPiac~dsvaIlFmFDLt~r~TLnSi~~WY~QAr~~NktAiPilvGTKyD~fi~l----p~e~Q~~I~~---- 150 (205)
T KOG1673|consen 79 QREFINMLPIACKDSVAILFMFDLTRRSTLNSIKEWYRQARGLNKTAIPILVGTKYDLFIDL----PPELQETISR---- 150 (205)
T ss_pred cHhhhccCceeecCcEEEEEEEecCchHHHHHHHHHHHHHhccCCccceEEeccchHhhhcC----CHHHHHHHHH----
Confidence 999999999988889999999999875544443 44467777653 235679999975321 1111111111
Q ss_pred HHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHH
Q 000728 944 VQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1001 (1326)
Q Consensus 944 ~~~e~~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~ 1001 (1326)
+...+. . --+.++|++|+.+..||..+|..+..
T Consensus 151 --------------qar~YA-------k----~mnAsL~F~Sts~sINv~KIFK~vlA 183 (205)
T KOG1673|consen 151 --------------QARKYA-------K----VMNASLFFCSTSHSINVQKIFKIVLA 183 (205)
T ss_pred --------------HHHHHH-------H----HhCCcEEEeeccccccHHHHHHHHHH
Confidence 111110 0 01258999999999999998876643
No 333
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=98.28 E-value=1.9e-06 Score=101.67 Aligned_cols=96 Identities=17% Similarity=0.223 Sum_probs=62.6
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCcccccccCceee--eeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcc---
Q 000728 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQ--QIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES--- 869 (1326)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq--~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~--- 869 (1326)
+.|+|+|.+++|||||+++|++.....+..+++|. .+|...++..........++. ..+....|.|+||||...
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p-~~~~~a~i~lvD~pGL~~~a~ 81 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKP-KKIVPATIEFVDIAGLVKGAS 81 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCC-ccccCceEEEEECCCCCCCCC
Confidence 56999999999999999999998866666677664 455555554211110000110 011112599999999432
Q ss_pred ----hhhhhhhccCccceeEEeeccc
Q 000728 870 ----FTNLRSRGSGLCDIAILVVDIM 891 (1326)
Q Consensus 870 ----F~~lr~rg~~~aDiaILVVDa~ 891 (1326)
+.+.....++.||++|+|||+.
T Consensus 82 ~g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 82 KGEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred hHHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 2233445678899999999985
No 334
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.28 E-value=9.4e-07 Score=100.98 Aligned_cols=94 Identities=17% Similarity=0.193 Sum_probs=60.3
Q ss_pred EEEEeCCCCCHHHHHHHHHcCcccccccCceeee--eeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcc-----
Q 000728 797 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQ--IGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES----- 869 (1326)
Q Consensus 797 V~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~--iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~----- 869 (1326)
|+|+|.+++|||||+++|++.++..+..+++|.+ .|...++.......+..... ..+....|.|+||||...
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~-~k~~~~~i~lvD~pGl~~~a~~~ 79 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKP-KKIVPATIEFVDIAGLVKGASKG 79 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCC-ceeeeeEEEEEECCCcCCCCchh
Confidence 6899999999999999999988877777777744 45454443211111111110 001112499999999432
Q ss_pred --hhhhhhhccCccceeEEeeccc
Q 000728 870 --FTNLRSRGSGLCDIAILVVDIM 891 (1326)
Q Consensus 870 --F~~lr~rg~~~aDiaILVVDa~ 891 (1326)
+.+.....++.||++|+|||+.
T Consensus 80 ~glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 80 EGLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred hHHHHHHHHHHHhCCEEEEEEeCc
Confidence 2333344567899999999985
No 335
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.27 E-value=2.2e-06 Score=101.58 Aligned_cols=130 Identities=17% Similarity=0.148 Sum_probs=66.5
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCcccc-c--ccCceeeeee---ee----------EeccccchhhhhhhccccccCC
Q 000728 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQE-G--EAGGITQQIG---AT----------YFPAENIRERTRELKANATLKV 856 (1326)
Q Consensus 793 R~piV~IlGhvdaGKTTLLd~L~~~~v~~-g--e~gGITq~ig---a~----------~~~~~~~~~~~~~v~~~~~~~~ 856 (1326)
+.-+|+|+|++|+||||++..|....+.. + ..+-||.+.. +. .++.............-..+..
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~ 215 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRN 215 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcC
Confidence 44579999999999999999997542211 1 1111221110 00 0000000000000000012345
Q ss_pred CCEEEEeCCCCcchhhh---hhh---ccCccceeEEeeccccCCchhHHHHHHHHHhcCCc-------EEEEEeccccc
Q 000728 857 PGLLVIDTPGHESFTNL---RSR---GSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTE-------FIVALNKVDRL 922 (1326)
Q Consensus 857 ~~I~IIDTPGhe~F~~l---r~r---g~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~vP-------~IVvINKiD~~ 922 (1326)
..++||||||...+... ... +...+.-.+||++++.+....+.-.+.+....++| -=|++||+|-.
T Consensus 216 ~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt 294 (374)
T PRK14722 216 KHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEA 294 (374)
T ss_pred CCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccC
Confidence 68999999996643221 112 23345567999999886654433333333332222 24678999975
No 336
>KOG0052 consensus Translation elongation factor EF-1 alpha/Tu [Translation, ribosomal structure and biogenesis]
Probab=98.25 E-value=4.3e-07 Score=105.73 Aligned_cols=66 Identities=32% Similarity=0.394 Sum_probs=58.4
Q ss_pred CCEEEEeCCCCcchhhhhhhccCccceeEEeeccccC-------CchhHHHHHHHHHhcC-CcEEEEEeccccc
Q 000728 857 PGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHG-------LEPQTIESLNLLKMRN-TEFIVALNKVDRL 922 (1326)
Q Consensus 857 ~~I~IIDTPGhe~F~~lr~rg~~~aDiaILVVDa~~G-------v~~QT~E~l~~l~~~~-vP~IVvINKiD~~ 922 (1326)
+.+++||.|||.+|...+..+.+.+|.++|+|.+..| ...||.+|..+...++ .++|+.+||||..
T Consensus 82 ~~i~iid~pgh~d~~k~mitg~sqaD~avliva~~~gefEagiskngqt~ehalla~tlgv~qliv~v~k~D~~ 155 (391)
T KOG0052|consen 82 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDST 155 (391)
T ss_pred EEEEEecCCCCCceeeeEEeeEeeeceeEEEEeeeccceeeeccccchhhhhhhhhccccceeeeEEeeccccc
Confidence 4699999999999999999999999999999998433 3589999999998887 4789999999975
No 337
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.25 E-value=2.5e-06 Score=96.22 Aligned_cols=96 Identities=20% Similarity=0.272 Sum_probs=65.8
Q ss_pred CcchhhhhhhccCccceeEEeeccccCC-chhHHHH-HHHHHhcCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHH
Q 000728 867 HESFTNLRSRGSGLCDIAILVVDIMHGL-EPQTIES-LNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDV 944 (1326)
Q Consensus 867 he~F~~lr~rg~~~aDiaILVVDa~~Gv-~~QT~E~-l~~l~~~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~ 944 (1326)
++.|..++..+++.+|++|+|+|+.+.. ....+.. +..+...++|+|||+||+|+... ...
T Consensus 23 ~eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~~~i~~vIV~NK~DL~~~------~~~----------- 85 (245)
T TIGR00157 23 AERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEAQNIEPIIVLNKIDLLDD------EDM----------- 85 (245)
T ss_pred ecccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECcccCCC------HHH-----------
Confidence 4677777778899999999999998644 4444433 34455578999999999999621 000
Q ss_pred HHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHH
Q 000728 945 QNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1001 (1326)
Q Consensus 945 ~~e~~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~ 1001 (1326)
. ......+...| ++++.+||++|.||.+|+..|..
T Consensus 86 ~-------~~~~~~~~~~g---------------~~v~~~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 86 E-------KEQLDIYRNIG---------------YQVLMTSSKNQDGLKELIEALQN 120 (245)
T ss_pred H-------HHHHHHHHHCC---------------CeEEEEecCCchhHHHHHhhhcC
Confidence 0 01111122221 47999999999999999987753
No 338
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.24 E-value=3.5e-06 Score=98.50 Aligned_cols=66 Identities=20% Similarity=0.172 Sum_probs=39.0
Q ss_pred CCCCEEEEeCCCCcchhhh-------hhhc-----cCccceeEEeeccccCCchhHHHHHHHHHhcCCcEEEEEeccccc
Q 000728 855 KVPGLLVIDTPGHESFTNL-------RSRG-----SGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRL 922 (1326)
Q Consensus 855 ~~~~I~IIDTPGhe~F~~l-------r~rg-----~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~vP~IVvINKiD~~ 922 (1326)
..+.+.||||||...+... ..+. ...++.++||+|++.|.. ...........--+.-+++||+|..
T Consensus 195 ~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~--~~~~a~~f~~~~~~~giIlTKlD~t 272 (318)
T PRK10416 195 RGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQN--ALSQAKAFHEAVGLTGIILTKLDGT 272 (318)
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChH--HHHHHHHHHhhCCCCEEEEECCCCC
Confidence 3467999999996543221 1111 235788999999996532 2222222221112457889999964
No 339
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.19 E-value=4.1e-06 Score=92.16 Aligned_cols=81 Identities=22% Similarity=0.281 Sum_probs=55.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCc--ccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcch---
Q 000728 796 ICCIMGHVDTGKTKLLDCIRGTN--VQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF--- 870 (1326)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~~~--v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F--- 870 (1326)
.|.++|.+.+|||||+..|.++. +..++....|.- .....|+.+.|.++|.||.-.-
T Consensus 61 ~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~v------------------pG~~~y~gaKiqlldlpgiiegakd 122 (358)
T KOG1487|consen 61 RVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTV------------------PGVIRYKGAKIQLLDLPGIIEGAKD 122 (358)
T ss_pred eeeEEecCccchhhhhhhhcCCCCccccccceeEEEe------------------cceEeccccceeeecCcchhccccc
Confidence 48999999999999999998753 333332221111 1122366778999999995432
Q ss_pred ----hhhhhhccCccceeEEeeccccCC
Q 000728 871 ----TNLRSRGSGLCDIAILVVDIMHGL 894 (1326)
Q Consensus 871 ----~~lr~rg~~~aDiaILVVDa~~Gv 894 (1326)
...+...++.|+++++|+|+...+
T Consensus 123 gkgrg~qviavartcnli~~vld~~kp~ 150 (358)
T KOG1487|consen 123 GKGRGKQVIAVARTCNLIFIVLDVLKPL 150 (358)
T ss_pred CCCCccEEEEEeecccEEEEEeeccCcc
Confidence 233445678899999999997654
No 340
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.18 E-value=3.9e-06 Score=90.64 Aligned_cols=104 Identities=23% Similarity=0.182 Sum_probs=66.0
Q ss_pred CCCcchhhhhhhccCccceeEEeeccccCCchhHHHHHHHHHhcCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHH
Q 000728 865 PGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDV 944 (1326)
Q Consensus 865 PGhe~F~~lr~rg~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~ 944 (1326)
|.+..|..++..++..+|++|+|||+.+........ + .....+.|+|+|+||+|++..+ . ....+
T Consensus 19 ~~~~~~~~~l~~~~~~ad~il~VvD~~~~~~~~~~~-l-~~~~~~~~~ilV~NK~Dl~~~~-----~-~~~~~------- 83 (190)
T cd01855 19 PDEDFILNLLSSISPKKALVVHVVDIFDFPGSLIPR-L-RLFGGNNPVILVGNKIDLLPKD-----K-NLVRI------- 83 (190)
T ss_pred ChHHHHHHHHHhcccCCcEEEEEEECccCCCccchh-H-HHhcCCCcEEEEEEchhcCCCC-----C-CHHHH-------
Confidence 444457899999999999999999998754322222 2 2233578999999999986321 0 00000
Q ss_pred HHHHHHHHHHHH--HHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHHH
Q 000728 945 QNEFNMRLVQIV--TQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1326)
Q Consensus 945 ~~e~~~~l~~I~--~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1326)
.... ......++ ...++|++||++|.||.+|+..|..++
T Consensus 84 --------~~~~~~~~~~~~~~------------~~~~i~~vSA~~~~gi~eL~~~l~~~l 124 (190)
T cd01855 84 --------KNWLRAKAAAGLGL------------KPKDVILISAKKGWGVEELINAIKKLA 124 (190)
T ss_pred --------HHHHHHHHHhhcCC------------CcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 0000 00011111 113689999999999999999887654
No 341
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.18 E-value=4.6e-06 Score=95.52 Aligned_cols=65 Identities=22% Similarity=0.222 Sum_probs=40.7
Q ss_pred CCCCEEEEeCCCCcchhhhhh-------hc-----cCccceeEEeeccccCCchhHHHHHHHHH-hcCCcEEEEEecccc
Q 000728 855 KVPGLLVIDTPGHESFTNLRS-------RG-----SGLCDIAILVVDIMHGLEPQTIESLNLLK-MRNTEFIVALNKVDR 921 (1326)
Q Consensus 855 ~~~~I~IIDTPGhe~F~~lr~-------rg-----~~~aDiaILVVDa~~Gv~~QT~E~l~~l~-~~~vP~IVvINKiD~ 921 (1326)
..+.+.||||||+..+..... +. ...+|.++||+|++.| ..+...+.... ..+ +.-+++||+|.
T Consensus 153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~--~~~~~~~~~f~~~~~-~~g~IlTKlDe 229 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTG--QNALEQAKVFNEAVG-LTGIILTKLDG 229 (272)
T ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCC--HHHHHHHHHHHhhCC-CCEEEEEccCC
Confidence 346799999999765422211 11 2348999999999754 33333333222 232 46788999997
Q ss_pred c
Q 000728 922 L 922 (1326)
Q Consensus 922 ~ 922 (1326)
.
T Consensus 230 ~ 230 (272)
T TIGR00064 230 T 230 (272)
T ss_pred C
Confidence 5
No 342
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.16 E-value=1e-05 Score=94.50 Aligned_cols=115 Identities=25% Similarity=0.351 Sum_probs=74.1
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCcccccc-cCc----e--eeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCC
Q 000728 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGE-AGG----I--TQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH 867 (1326)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~~~v~~ge-~gG----I--Tq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGh 867 (1326)
..+.++|..|.|||||+|.|+.+.+.... ..+ + |..|-.+.+... .. ++ .-.|++|||||.
T Consensus 22 ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~ie---e~------g~---~l~LtvidtPGf 89 (366)
T KOG2655|consen 22 FTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIE---EN------GV---KLNLTVIDTPGF 89 (366)
T ss_pred eEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeec---CC------Ce---EEeeEEeccCCC
Confidence 67999999999999999999877544221 000 0 111111111110 00 00 124899999996
Q ss_pred cchhhh-------------------------hhhccC--ccceeEEeeccc-cCCchhHHHHHHHHHhcCCcEEEEEecc
Q 000728 868 ESFTNL-------------------------RSRGSG--LCDIAILVVDIM-HGLEPQTIESLNLLKMRNTEFIVALNKV 919 (1326)
Q Consensus 868 e~F~~l-------------------------r~rg~~--~aDiaILVVDa~-~Gv~~QT~E~l~~l~~~~vP~IVvINKi 919 (1326)
-++... ..+.+. ..++||++|... ||+.|..++.+..+.. .+++|-||-|.
T Consensus 90 GD~vdns~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~Mk~l~~-~vNiIPVI~Ka 168 (366)
T KOG2655|consen 90 GDAVDNSNCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEFMKKLSK-KVNLIPVIAKA 168 (366)
T ss_pred cccccccccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHHHHHHHhc-cccccceeecc
Confidence 553211 001122 478899999874 8899999999887754 48899999999
Q ss_pred ccc
Q 000728 920 DRL 922 (1326)
Q Consensus 920 D~~ 922 (1326)
|.+
T Consensus 169 D~l 171 (366)
T KOG2655|consen 169 DTL 171 (366)
T ss_pred ccC
Confidence 987
No 343
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.15 E-value=6.9e-06 Score=86.61 Aligned_cols=63 Identities=24% Similarity=0.207 Sum_probs=38.6
Q ss_pred CCCEEEEeCCCCcchhhhh--------hhccCccceeEEeeccccCCchh--HHHHHHHHHhcCCcEEEEEecccc
Q 000728 856 VPGLLVIDTPGHESFTNLR--------SRGSGLCDIAILVVDIMHGLEPQ--TIESLNLLKMRNTEFIVALNKVDR 921 (1326)
Q Consensus 856 ~~~I~IIDTPGhe~F~~lr--------~rg~~~aDiaILVVDa~~Gv~~Q--T~E~l~~l~~~~vP~IVvINKiD~ 921 (1326)
.+.+.||||||...-..+. ......+|.+|+|||+.+..... ......++.... +|++||+|+
T Consensus 86 ~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~ad---~ivlnk~dl 158 (158)
T cd03112 86 AFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAFAD---RILLNKTDL 158 (158)
T ss_pred CCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHHCC---EEEEecccC
Confidence 4679999999964322222 12344589999999997643311 111223444333 779999996
No 344
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=98.13 E-value=1.7e-05 Score=86.55 Aligned_cols=115 Identities=25% Similarity=0.332 Sum_probs=73.2
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCccccc-----ccCceee--eeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCC
Q 000728 795 PICCIMGHVDTGKTKLLDCIRGTNVQEG-----EAGGITQ--QIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH 867 (1326)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~~~v~~g-----e~gGITq--~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGh 867 (1326)
.+|.|+|..|.|||||++.|....+... .+-.+++ .|.+... .+.+.... -.|++|||||+
T Consensus 47 FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~th---vieE~gVk---------lkltviDTPGf 114 (336)
T KOG1547|consen 47 FNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITH---VIEEKGVK---------LKLTVIDTPGF 114 (336)
T ss_pred eEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeee---eeeecceE---------EEEEEecCCCc
Confidence 4699999999999999999986654331 1111222 2221111 11111111 14999999997
Q ss_pred cchhhh--------------------------hhhccC--ccceeEEeeccc-cCCchhHHHHHHHHHhcCCcEEEEEec
Q 000728 868 ESFTNL--------------------------RSRGSG--LCDIAILVVDIM-HGLEPQTIESLNLLKMRNTEFIVALNK 918 (1326)
Q Consensus 868 e~F~~l--------------------------r~rg~~--~aDiaILVVDa~-~Gv~~QT~E~l~~l~~~~vP~IVvINK 918 (1326)
-++.+. |.+.+. ..+.|+++|..+ |.+.|-.+++|..|... +.+|-||-|
T Consensus 115 GDqInN~ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDieflkrLt~v-vNvvPVIak 193 (336)
T KOG1547|consen 115 GDQINNDNCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFLKRLTEV-VNVVPVIAK 193 (336)
T ss_pred ccccCccchhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHHHHHHhhh-heeeeeEee
Confidence 664332 222222 256788888775 67899999999887654 578889999
Q ss_pred cccc
Q 000728 919 VDRL 922 (1326)
Q Consensus 919 iD~~ 922 (1326)
.|.+
T Consensus 194 aDtl 197 (336)
T KOG1547|consen 194 ADTL 197 (336)
T ss_pred cccc
Confidence 9976
No 345
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.12 E-value=8.2e-06 Score=98.29 Aligned_cols=65 Identities=20% Similarity=0.141 Sum_probs=40.8
Q ss_pred CCCEEEEeCCCCcchhh-h---hhh--ccCccceeEEeeccccCCchhHHHHHHHHHhcCCcEEEEEeccccc
Q 000728 856 VPGLLVIDTPGHESFTN-L---RSR--GSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRL 922 (1326)
Q Consensus 856 ~~~I~IIDTPGhe~F~~-l---r~r--g~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~vP~IVvINKiD~~ 922 (1326)
.+.+.||||||+..... + ... ....+|.++||+|++.|... ...+......--+--|++||+|..
T Consensus 182 ~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a--~~~a~~F~~~~~~~g~IlTKlD~~ 252 (429)
T TIGR01425 182 NFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAA--EAQAKAFKDSVDVGSVIITKLDGH 252 (429)
T ss_pred CCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhH--HHHHHHHHhccCCcEEEEECccCC
Confidence 46799999999654321 1 111 23357889999999876432 223333333333567889999974
No 346
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.12 E-value=1.1e-05 Score=99.62 Aligned_cols=112 Identities=19% Similarity=0.137 Sum_probs=66.3
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCcccc-ccc-CceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchh-
Q 000728 795 PICCIMGHVDTGKTKLLDCIRGTNVQE-GEA-GGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT- 871 (1326)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~~~v~~-ge~-gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~- 871 (1326)
..|+|||.+|+|||||+|.|++..+.. ... +++|. +..++.. +....|+||||||..+..
T Consensus 119 lrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr-~~ei~~~----------------idG~~L~VIDTPGL~dt~~ 181 (763)
T TIGR00993 119 LNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTS-VQEIEGL----------------VQGVKIRVIDTPGLKSSAS 181 (763)
T ss_pred eEEEEECCCCCCHHHHHHHHhccccccccCCCCCceE-EEEEEEE----------------ECCceEEEEECCCCCcccc
Confidence 459999999999999999999876432 221 23332 2111111 112359999999976531
Q ss_pred -----hh----hhhccC--ccceeEEeeccccC-CchhHHHHHHHHHh---cC--CcEEEEEecccccc
Q 000728 872 -----NL----RSRGSG--LCDIAILVVDIMHG-LEPQTIESLNLLKM---RN--TEFIVALNKVDRLY 923 (1326)
Q Consensus 872 -----~l----r~rg~~--~aDiaILVVDa~~G-v~~QT~E~l~~l~~---~~--vP~IVvINKiD~~~ 923 (1326)
.. ..+++. .+|++|||+..+.. ........++.+.. .. -.+||++|..|.+.
T Consensus 182 dq~~neeILk~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lp 250 (763)
T TIGR00993 182 DQSKNEKILSSVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAP 250 (763)
T ss_pred chHHHHHHHHHHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence 11 112333 47998888866432 21223334444322 22 36899999999873
No 347
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=98.11 E-value=4.6e-05 Score=93.14 Aligned_cols=85 Identities=19% Similarity=0.296 Sum_probs=48.0
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchhhh
Q 000728 794 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL 873 (1326)
Q Consensus 794 ~piV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~~l 873 (1326)
...|.|||..++||||||.+|.+..- ...| .-++.+|+...... ... ...+.||=..|-..|..+
T Consensus 25 ~k~vlvlG~~~~GKttli~~L~~~e~---~~~~--~aLeYty~~v~d~~--------~dd--~~rl~vw~L~g~~~~~~L 89 (472)
T PF05783_consen 25 EKSVLVLGDKGSGKTTLIARLQGIED---PKKG--LALEYTYLDVKDED--------RDD--LARLNVWELDGDPSHSDL 89 (472)
T ss_pred CceEEEEeCCCCchHHHHHHhhccCC---CCCC--cccceEEEeeccCc--------CCc--CceeeEEEcCCCcchHhH
Confidence 34599999999999999999975321 1122 23444444322110 001 123566666565556665
Q ss_pred hhhccCc---c-ceeEEeeccccC
Q 000728 874 RSRGSGL---C-DIAILVVDIMHG 893 (1326)
Q Consensus 874 r~rg~~~---a-DiaILVVDa~~G 893 (1326)
..-.+.. . =++|||+|.+..
T Consensus 90 Lk~~lt~~~l~~t~vvIvlDlS~P 113 (472)
T PF05783_consen 90 LKFALTPENLPNTLVVIVLDLSKP 113 (472)
T ss_pred hcccCCcccccceEEEEEecCCCh
Confidence 5443332 2 247788887754
No 348
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.08 E-value=2.5e-05 Score=85.77 Aligned_cols=82 Identities=18% Similarity=0.226 Sum_probs=53.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcch-----
Q 000728 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF----- 870 (1326)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F----- 870 (1326)
.|+++|.+.+||||||..|+.+.-.......+|.. .+| ....|+...|+++|.||...-
T Consensus 64 RValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLt----cIp------------Gvi~y~ga~IQllDLPGIieGAsqgk 127 (364)
T KOG1486|consen 64 RVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLT----CIP------------GVIHYNGANIQLLDLPGIIEGASQGK 127 (364)
T ss_pred EEEEecCCCccHHHHHHHhhcchhhhhceeeeEEE----eec------------ceEEecCceEEEecCcccccccccCC
Confidence 49999999999999999998775432222212211 111 112345567999999995432
Q ss_pred --hhhhhhccCccceeEEeeccccC
Q 000728 871 --TNLRSRGSGLCDIAILVVDIMHG 893 (1326)
Q Consensus 871 --~~lr~rg~~~aDiaILVVDa~~G 893 (1326)
...+...++.+|++++|+|++.+
T Consensus 128 GRGRQviavArtaDlilMvLDatk~ 152 (364)
T KOG1486|consen 128 GRGRQVIAVARTADLILMVLDATKS 152 (364)
T ss_pred CCCceEEEEeecccEEEEEecCCcc
Confidence 12233456779999999999753
No 349
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.06 E-value=7.5e-06 Score=85.79 Aligned_cols=55 Identities=20% Similarity=0.320 Sum_probs=40.9
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCcc-cccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCC
Q 000728 794 SPICCIMGHVDTGKTKLLDCIRGTNV-QEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH 867 (1326)
Q Consensus 794 ~piV~IlGhvdaGKTTLLd~L~~~~v-~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGh 867 (1326)
...|+|+|.+|+|||||+|+|++... ..+..+|.|.+...+.+ . .++.||||||.
T Consensus 102 ~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~~~~--~-----------------~~~~liDtPGi 157 (157)
T cd01858 102 QISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQYITL--M-----------------KRIYLIDCPGV 157 (157)
T ss_pred ceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEEEEc--C-----------------CCEEEEECcCC
Confidence 34688999999999999999998654 45667777766432221 1 24899999994
No 350
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=98.05 E-value=8e-05 Score=84.37 Aligned_cols=66 Identities=15% Similarity=0.188 Sum_probs=41.5
Q ss_pred CCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcC
Q 000728 909 NTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAIS 988 (1326)
Q Consensus 909 ~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~e~~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~t 988 (1326)
++||+||++|||.+. .|.......-+.|......|+.++..+| ..+|.+|++.
T Consensus 222 Gi~vlVV~TK~D~~s------------~leke~eyrDehfdfiq~~lRkFCLr~G---------------aaLiyTSvKE 274 (473)
T KOG3905|consen 222 GIPVLVVCTKCDAVS------------VLEKEHEYRDEHFDFIQSHLRKFCLRYG---------------AALIYTSVKE 274 (473)
T ss_pred CCcEEEEEeccchhh------------HhhhcchhhHHHHHHHHHHHHHHHHHcC---------------ceeEEeeccc
Confidence 679999999999852 1221111122233333334444444444 4789999999
Q ss_pred CCChhhHHHHHHH
Q 000728 989 GEGIPDLLLLLVQ 1001 (1326)
Q Consensus 989 GeGI~eLl~~L~~ 1001 (1326)
.-||+-|...|+.
T Consensus 275 ~KNidllyKYivh 287 (473)
T KOG3905|consen 275 TKNIDLLYKYIVH 287 (473)
T ss_pred ccchHHHHHHHHH
Confidence 9999877777664
No 351
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.05 E-value=1.6e-05 Score=83.39 Aligned_cols=89 Identities=21% Similarity=0.174 Sum_probs=60.3
Q ss_pred hccCccceeEEeeccccCCchhHHHHHHHHHhc--CCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHHHHHHHHH
Q 000728 876 RGSGLCDIAILVVDIMHGLEPQTIESLNLLKMR--NTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLV 953 (1326)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~--~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~e~~~~l~ 953 (1326)
+.+..+|++|+|+|+.++..........++... ++|+|+|+||+|+... . .+.
T Consensus 4 ~~l~~aD~il~VvD~~~p~~~~~~~i~~~l~~~~~~~p~ilVlNKiDl~~~------~-------------------~~~ 58 (157)
T cd01858 4 KVIDSSDVVIQVLDARDPMGTRCKHVEEYLKKEKPHKHLIFVLNKCDLVPT------W-------------------VTA 58 (157)
T ss_pred HhhhhCCEEEEEEECCCCccccCHHHHHHHHhccCCCCEEEEEEchhcCCH------H-------------------HHH
Confidence 356789999999999987766666666666543 4899999999998621 0 001
Q ss_pred HHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHHH
Q 000728 954 QIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1326)
Q Consensus 954 ~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1326)
.....+... + .+.+|++||++|.|+..|+..|..++
T Consensus 59 ~~~~~~~~~------------~--~~~~~~iSa~~~~~~~~L~~~l~~~~ 94 (157)
T cd01858 59 RWVKILSKE------------Y--PTIAFHASINNPFGKGSLIQLLRQFS 94 (157)
T ss_pred HHHHHHhcC------------C--cEEEEEeeccccccHHHHHHHHHHHH
Confidence 111111110 1 12368999999999999998886543
No 352
>PRK12289 GTPase RsgA; Reviewed
Probab=98.04 E-value=1.7e-05 Score=94.00 Aligned_cols=87 Identities=22% Similarity=0.202 Sum_probs=58.7
Q ss_pred hccCccceeEEeeccccCC-chh-HHHHHHHHHhcCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHHHHHHHHH
Q 000728 876 RGSGLCDIAILVVDIMHGL-EPQ-TIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLV 953 (1326)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv-~~Q-T~E~l~~l~~~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~e~~~~l~ 953 (1326)
..+..+|.+|||+|+.+.. .+. ...+|..+...++|+|||+||+|++.. .. +.
T Consensus 85 ~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~~~ip~ILVlNK~DLv~~------~~-------------------~~ 139 (352)
T PRK12289 85 PPVANADQILLVFALAEPPLDPWQLSRFLVKAESTGLEIVLCLNKADLVSP------TE-------------------QQ 139 (352)
T ss_pred hhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEchhcCCh------HH-------------------HH
Confidence 4578899999999998643 332 234445555678999999999999621 00 01
Q ss_pred HHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHH
Q 000728 954 QIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1326)
Q Consensus 954 ~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~ 1002 (1326)
.....+...| +++|+|||.+|.||.+|+..|...
T Consensus 140 ~~~~~~~~~g---------------~~v~~iSA~tg~GI~eL~~~L~~k 173 (352)
T PRK12289 140 QWQDRLQQWG---------------YQPLFISVETGIGLEALLEQLRNK 173 (352)
T ss_pred HHHHHHHhcC---------------CeEEEEEcCCCCCHHHHhhhhccc
Confidence 1111222222 478999999999999999887643
No 353
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.04 E-value=7.8e-06 Score=87.48 Aligned_cols=56 Identities=20% Similarity=0.447 Sum_probs=43.8
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCcc-cccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCC
Q 000728 793 RSPICCIMGHVDTGKTKLLDCIRGTNV-QEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH 867 (1326)
Q Consensus 793 R~piV~IlGhvdaGKTTLLd~L~~~~v-~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGh 867 (1326)
+...|+|+|.+|+|||||+++|++... ..+..+|+|.++..+.+. ..+.|+||||.
T Consensus 116 ~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~~~~~-------------------~~~~l~DtPGi 172 (172)
T cd04178 116 TSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQEVHLD-------------------KKVKLLDSPGI 172 (172)
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEEEEeC-------------------CCEEEEECcCC
Confidence 345699999999999999999998654 567778888876544331 24899999994
No 354
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=97.99 E-value=1.2e-05 Score=93.82 Aligned_cols=99 Identities=19% Similarity=0.222 Sum_probs=70.6
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCcccccccCcee--eeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcc--
Q 000728 794 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGIT--QQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES-- 869 (1326)
Q Consensus 794 ~piV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGIT--q~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~-- 869 (1326)
.+.|+|+|-+|+|||||+++|+...+....++..| ...|..+++...+......+.+...+....|.|+|.+|...
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 35699999999999999999998886655555555 56677787775444333323332223334699999999432
Q ss_pred -----hhhhhhhccCccceeEEeecccc
Q 000728 870 -----FTNLRSRGSGLCDIAILVVDIMH 892 (1326)
Q Consensus 870 -----F~~lr~rg~~~aDiaILVVDa~~ 892 (1326)
..|.....++.+|.++.||++..
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVVr~f~ 109 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVVRCFG 109 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEEEecC
Confidence 45556667888999999999963
No 355
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=97.99 E-value=4.8e-05 Score=79.60 Aligned_cols=83 Identities=23% Similarity=0.247 Sum_probs=56.3
Q ss_pred ceeEEeeccccCCchhHHHHH-HHHHhcCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 000728 882 DIAILVVDIMHGLEPQTIESL-NLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLK 960 (1326)
Q Consensus 882 DiaILVVDa~~Gv~~QT~E~l-~~l~~~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~e~~~~l~~I~~~L~ 960 (1326)
|++|+|+|+.++......... ..+...++|+|+|+||+|++.. . . +...+..+.
T Consensus 1 Dvvl~VvD~~~p~~~~~~~i~~~~~~~~~~p~IiVlNK~Dl~~~-------~---~---------------~~~~~~~~~ 55 (155)
T cd01849 1 DVILEVLDARDPLGTRSPDIERVLIKEKGKKLILVLNKADLVPK-------E---V---------------LRKWLAYLR 55 (155)
T ss_pred CEEEEEEeccCCccccCHHHHHHHHhcCCCCEEEEEechhcCCH-------H---H---------------HHHHHHHHH
Confidence 789999999887655544444 4566678999999999998621 0 0 001111111
Q ss_pred HcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHHH
Q 000728 961 EQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1326)
Q Consensus 961 e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1326)
.. ....+|++||++|.|+..|+..|....
T Consensus 56 ~~--------------~~~~ii~vSa~~~~gi~~L~~~i~~~~ 84 (155)
T cd01849 56 HS--------------YPTIPFKISATNGQGIEKKESAFTKQT 84 (155)
T ss_pred hh--------------CCceEEEEeccCCcChhhHHHHHHHHh
Confidence 11 124789999999999999999887654
No 356
>cd03693 EF1_alpha_II EF1_alpha_II: this family represents the domain II of elongation factor 1-alpha (EF-1a) that is found in archaea and all eukaryotic lineages. EF-1A is very abundant in the cytosol, where it is involved in the GTP-dependent binding of aminoacyl-tRNAs to the A site of the ribosomes in the second step of translation from mRNAs to proteins. Both domain II of EF1A and domain IV of IF2/eIF5B have been implicated in recognition of the 3'-ends of tRNA. More than 61% of eukaryotic elongation factor 1A (eEF-1A) in cells is estimated to be associated with actin cytoskeleton. The binding of eEF1A to actin is a noncanonical function that may link two distinct cellular processes, cytoskeleton organization and gene expression.
Probab=97.99 E-value=2.8e-05 Score=74.55 Aligned_cols=84 Identities=19% Similarity=0.215 Sum_probs=66.5
Q ss_pred cccceeEEEEEEEeCceeEEEEEEEeeEecCCCEEEEccCCCceeeeeeeccCCCCCceeeecceeecccccccc---cc
Q 000728 1015 NELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAA---QG 1091 (1326)
Q Consensus 1015 ~~~~~~VlEvk~~~G~Gtvi~giV~~G~Lr~GD~IVl~g~~g~~~~~IR~Ll~p~p~~e~rVk~~~~~~k~v~aa---~g 1091 (1326)
.||+++|.++|.+.|.|+++.|.|.+|+|+.||.|++++++ ....|+++++|+..+..| ..
T Consensus 3 ~p~r~~V~~vf~~~g~g~vv~G~v~~G~i~~gd~v~i~P~~----------------~~~~V~sI~~~~~~~~~a~aG~~ 66 (91)
T cd03693 3 KPLRLPIQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPAG----------------VTGEVKSVEMHHEPLEEALPGDN 66 (91)
T ss_pred CCeEEEEEEEEEeCCceEEEEEEEecceeecCCEEEECCCC----------------cEEEEEEEEECCcCcCEECCCCE
Confidence 47899999999999999999999999999999999987643 134566777777666654 34
Q ss_pred eeeeccccccccCCCceEEcCCc
Q 000728 1092 IKITAQGLEHAIAGTGLYVVGPD 1114 (1326)
Q Consensus 1092 v~i~~~gl~~~~aG~~~~v~~~~ 1114 (1326)
+.|.+.|++......+++++.++
T Consensus 67 v~i~l~~i~~~~v~~G~vl~~~~ 89 (91)
T cd03693 67 VGFNVKNVSKKDIKRGDVAGDSK 89 (91)
T ss_pred EEEEECCCCHHHcCCcCEEccCC
Confidence 88888898776666777877764
No 357
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.98 E-value=4.2e-05 Score=90.60 Aligned_cols=64 Identities=17% Similarity=0.078 Sum_probs=38.1
Q ss_pred CCEEEEeCCCCcchhhh----hhhc--cCccceeEEeeccccCCchhHHHHHHHHHhcCCcEEEEEeccccc
Q 000728 857 PGLLVIDTPGHESFTNL----RSRG--SGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRL 922 (1326)
Q Consensus 857 ~~I~IIDTPGhe~F~~l----r~rg--~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~vP~IVvINKiD~~ 922 (1326)
..++||||||....... ..+. ....+.++||+|++.+- ......+......++ -=|++||+|-.
T Consensus 321 ~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~-~d~~~i~~~F~~~~i-dglI~TKLDET 390 (436)
T PRK11889 321 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS-KDMIEIITNFKDIHI-DGIVFTKFDET 390 (436)
T ss_pred CCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccCh-HHHHHHHHHhcCCCC-CEEEEEcccCC
Confidence 57999999996553221 1111 23467889999986432 122444444444332 34678999975
No 358
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=97.98 E-value=1.9e-05 Score=84.08 Aligned_cols=99 Identities=22% Similarity=0.198 Sum_probs=66.3
Q ss_pred CCCCcc-hhhhhhhccCccceeEEeeccccCCchhHHHHHHHHHhcCCcEEEEEeccccccCcccCCCchHHHHHHHhhH
Q 000728 864 TPGHES-FTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNT 942 (1326)
Q Consensus 864 TPGhe~-F~~lr~rg~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~ 942 (1326)
-|||.. ..+.....+..+|++|+|+|+.++.......++..+ .+.|+|+++||+|++.. . .
T Consensus 2 ~~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~~i~~~~--~~k~~ilVlNK~Dl~~~-------~---~------ 63 (171)
T cd01856 2 FPGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRNPLLEKIL--GNKPRIIVLNKADLADP-------K---K------ 63 (171)
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeccCccCcCChhhHhHh--cCCCEEEEEehhhcCCh-------H---H------
Confidence 477754 345556678899999999999887665544444433 35799999999998521 0 0
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHHHH
Q 000728 943 DVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1004 (1326)
Q Consensus 943 ~~~~e~~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~q 1004 (1326)
+......+... ...++++||++|.|+..|+..|...++
T Consensus 64 ---------~~~~~~~~~~~---------------~~~vi~iSa~~~~gi~~L~~~l~~~l~ 101 (171)
T cd01856 64 ---------TKKWLKYFESK---------------GEKVLFVNAKSGKGVKKLLKAAKKLLK 101 (171)
T ss_pred ---------HHHHHHHHHhc---------------CCeEEEEECCCcccHHHHHHHHHHHHH
Confidence 00011111111 136899999999999999998877653
No 359
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.97 E-value=2.7e-05 Score=94.51 Aligned_cols=63 Identities=17% Similarity=0.244 Sum_probs=39.6
Q ss_pred CCEEEEeCCCCcchhhh------hhhccCccceeEEeeccccCCchhHHHHHHHHHhcCCc-EEEEEeccccc
Q 000728 857 PGLLVIDTPGHESFTNL------RSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTE-FIVALNKVDRL 922 (1326)
Q Consensus 857 ~~I~IIDTPGhe~F~~l------r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~vP-~IVvINKiD~~ 922 (1326)
..++||||||...+... ....+..+|.+|||+|++.| ..+...+..... .++ .-|++||+|-.
T Consensus 176 ~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~g--q~av~~a~~F~~-~l~i~gvIlTKlD~~ 245 (437)
T PRK00771 176 ADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIG--QQAKNQAKAFHE-AVGIGGIIITKLDGT 245 (437)
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEecccc--HHHHHHHHHHHh-cCCCCEEEEecccCC
Confidence 47999999996554221 11234568999999999886 233333333221 244 35788999964
No 360
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.95 E-value=2.9e-05 Score=84.88 Aligned_cols=64 Identities=22% Similarity=0.173 Sum_probs=37.9
Q ss_pred CCEEEEeCCCCcchhhhh-----h-hccCccceeEEeeccccCCchhHHHHHHHHHhcCCcEEEEEeccccc
Q 000728 857 PGLLVIDTPGHESFTNLR-----S-RGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRL 922 (1326)
Q Consensus 857 ~~I~IIDTPGhe~F~~lr-----~-rg~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~vP~IVvINKiD~~ 922 (1326)
..+.||||||+..+.... . ......+-++||++++.+.... ..........++. =+++||+|-.
T Consensus 84 ~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~-~~~~~~~~~~~~~-~lIlTKlDet 153 (196)
T PF00448_consen 84 YDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDL-EQALAFYEAFGID-GLILTKLDET 153 (196)
T ss_dssp SSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHH-HHHHHHHHHSSTC-EEEEESTTSS
T ss_pred CCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHH-HHHHHHhhcccCc-eEEEEeecCC
Confidence 569999999966543211 1 1122577899999998864322 2333333444444 3459999975
No 361
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.94 E-value=4e-05 Score=90.50 Aligned_cols=25 Identities=24% Similarity=0.275 Sum_probs=21.7
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHc
Q 000728 792 LRSPICCIMGHVDTGKTKLLDCIRG 816 (1326)
Q Consensus 792 ~R~piV~IlGhvdaGKTTLLd~L~~ 816 (1326)
.+..+|+|+|+.|+||||++..|..
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~ 228 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGW 228 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999999864
No 362
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=97.91 E-value=2.7e-05 Score=91.25 Aligned_cols=67 Identities=19% Similarity=0.130 Sum_probs=52.0
Q ss_pred CCCEEEEeCCCCcchhhhhhhccCccceeEEeeccccC-----------CchhHHHHHHHHHh----cCCcEEEEEeccc
Q 000728 856 VPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHG-----------LEPQTIESLNLLKM----RNTEFIVALNKVD 920 (1326)
Q Consensus 856 ~~~I~IIDTPGhe~F~~lr~rg~~~aDiaILVVDa~~G-----------v~~QT~E~l~~l~~----~~vP~IVvINKiD 920 (1326)
...+.+||++|+..+...|..++..++++|+|||.++- ....++..+..+.. .++|+||++||+|
T Consensus 160 ~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~D 239 (317)
T cd00066 160 NLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKKD 239 (317)
T ss_pred ceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccChH
Confidence 34588999999999999999999999999999999762 12333334433333 3789999999999
Q ss_pred cc
Q 000728 921 RL 922 (1326)
Q Consensus 921 ~~ 922 (1326)
+.
T Consensus 240 ~f 241 (317)
T cd00066 240 LF 241 (317)
T ss_pred HH
Confidence 75
No 363
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.90 E-value=4.6e-05 Score=93.35 Aligned_cols=126 Identities=17% Similarity=0.186 Sum_probs=62.8
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCccccc---ccCceeee---eeee----------Eeccccchhhhhhhcc-ccccC
Q 000728 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEG---EAGGITQQ---IGAT----------YFPAENIRERTRELKA-NATLK 855 (1326)
Q Consensus 793 R~piV~IlGhvdaGKTTLLd~L~~~~v~~g---e~gGITq~---iga~----------~~~~~~~~~~~~~v~~-~~~~~ 855 (1326)
+..+|+|+|..|+|||||+..|...-...+ ...-|+.+ +|+. .+++..... ...+.. -..+.
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d-~~~L~~aL~~l~ 427 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADS-AESLLDLLERLR 427 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCc-HHHHHHHHHHhc
Confidence 456899999999999999988864211110 00111111 1100 000000000 000000 00233
Q ss_pred CCCEEEEeCCCCcchhhhh------hhccCccceeEEeeccccCCchhHHHHHHHHHhcCCcEEEEEeccccc
Q 000728 856 VPGLLVIDTPGHESFTNLR------SRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRL 922 (1326)
Q Consensus 856 ~~~I~IIDTPGhe~F~~lr------~rg~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~vP~IVvINKiD~~ 922 (1326)
.+.++||||||...+.... .+... ....+|||++..+.. +..+.+..+... .+.-|++||+|..
T Consensus 428 ~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~-~~a~lLVLpAtss~~-Dl~eii~~f~~~-~~~gvILTKlDEt 497 (559)
T PRK12727 428 DYKLVLIDTAGMGQRDRALAAQLNWLRAAR-QVTSLLVLPANAHFS-DLDEVVRRFAHA-KPQGVVLTKLDET 497 (559)
T ss_pred cCCEEEecCCCcchhhHHHHHHHHHHHHhh-cCCcEEEEECCCChh-HHHHHHHHHHhh-CCeEEEEecCcCc
Confidence 5679999999965442221 11112 335678888765422 222344444333 4677999999975
No 364
>PRK00098 GTPase RsgA; Reviewed
Probab=97.90 E-value=4.8e-05 Score=88.41 Aligned_cols=84 Identities=25% Similarity=0.298 Sum_probs=55.4
Q ss_pred cCccceeEEeeccccCCc-hhH-HHHHHHHHhcCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHHHHHHHHHHH
Q 000728 878 SGLCDIAILVVDIMHGLE-PQT-IESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQI 955 (1326)
Q Consensus 878 ~~~aDiaILVVDa~~Gv~-~QT-~E~l~~l~~~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~e~~~~l~~I 955 (1326)
+..+|++|||+|+.+... ... ..++..+...++|+|||+||+|+... .. .+...
T Consensus 78 aaniD~vllV~d~~~p~~~~~~idr~L~~~~~~~ip~iIVlNK~DL~~~------~~------------------~~~~~ 133 (298)
T PRK00098 78 AANVDQAVLVFAAKEPDFSTDLLDRFLVLAEANGIKPIIVLNKIDLLDD------LE------------------EAREL 133 (298)
T ss_pred eecCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEhHHcCCC------HH------------------HHHHH
Confidence 478999999999976432 222 23444566778999999999998521 00 00111
Q ss_pred HHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHH
Q 000728 956 VTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLV 1000 (1326)
Q Consensus 956 ~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~ 1000 (1326)
...+...| ++++++||++|.||.+|+..|.
T Consensus 134 ~~~~~~~g---------------~~v~~vSA~~g~gi~~L~~~l~ 163 (298)
T PRK00098 134 LALYRAIG---------------YDVLELSAKEGEGLDELKPLLA 163 (298)
T ss_pred HHHHHHCC---------------CeEEEEeCCCCccHHHHHhhcc
Confidence 11121111 4799999999999999988764
No 365
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=97.89 E-value=3e-05 Score=89.07 Aligned_cols=99 Identities=20% Similarity=0.244 Sum_probs=66.7
Q ss_pred CCCcc-hhhhhhhccCccceeEEeeccccCCchhHHHHHHHHHhcCCcEEEEEeccccccCcccCCCchHHHHHHHhhHH
Q 000728 865 PGHES-FTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTD 943 (1326)
Q Consensus 865 PGhe~-F~~lr~rg~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~ 943 (1326)
|||-. ........+..+|++|+|+|+..++.........++ .+.|+|+|+||+|+... . .
T Consensus 5 pgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~~i~~~l--~~kp~IiVlNK~DL~~~-------~---~------- 65 (276)
T TIGR03596 5 PGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRNPMIDEIR--GNKPRLIVLNKADLADP-------A---V------- 65 (276)
T ss_pred hHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCChhHHHHH--CCCCEEEEEEccccCCH-------H---H-------
Confidence 78754 244455678899999999999877665544444444 36899999999998521 0 0
Q ss_pred HHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHHHHH
Q 000728 944 VQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQK 1005 (1326)
Q Consensus 944 ~~~e~~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~q~ 1005 (1326)
+......+...+ .++|++||.+|.|+..|+..|..+++.
T Consensus 66 --------~~~~~~~~~~~~---------------~~vi~iSa~~~~gi~~L~~~i~~~~~~ 104 (276)
T TIGR03596 66 --------TKQWLKYFEEKG---------------IKALAINAKKGKGVKKIIKAAKKLLKE 104 (276)
T ss_pred --------HHHHHHHHHHcC---------------CeEEEEECCCcccHHHHHHHHHHHHHH
Confidence 001111121111 378999999999999999988776653
No 366
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=97.88 E-value=2.2e-05 Score=80.92 Aligned_cols=53 Identities=21% Similarity=0.459 Sum_probs=37.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCcc-cccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCC
Q 000728 796 ICCIMGHVDTGKTKLLDCIRGTNV-QEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH 867 (1326)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~~~v-~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGh 867 (1326)
.|+|+|.+|+|||||+++|++... ..+...|.|.+...+.+. ..+.||||||.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIFLT-------------------PTITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEEeC-------------------CCEEEEECCCc
Confidence 699999999999999999997664 333445555553222211 25899999996
No 367
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=97.87 E-value=2.4e-05 Score=81.88 Aligned_cols=56 Identities=20% Similarity=0.369 Sum_probs=41.6
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCc-ccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCC
Q 000728 793 RSPICCIMGHVDTGKTKLLDCIRGTN-VQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH 867 (1326)
Q Consensus 793 R~piV~IlGhvdaGKTTLLd~L~~~~-v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGh 867 (1326)
+.+.|+|+|++++|||||+++|++.. ...+..+|+|.......+. ..++||||||.
T Consensus 99 ~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~~~~-------------------~~~~liDtPG~ 155 (155)
T cd01849 99 KSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEVKLD-------------------NKIKLLDTPGI 155 (155)
T ss_pred cCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEEEec-------------------CCEEEEECCCC
Confidence 45669999999999999999999865 3445556777665433321 24999999994
No 368
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=97.85 E-value=0.0001 Score=86.30 Aligned_cols=124 Identities=25% Similarity=0.254 Sum_probs=70.9
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCc------ccccccCceeeee----------------eeeEeccccc-hhhhhhhccc
Q 000728 795 PICCIMGHVDTGKTKLLDCIRGTN------VQEGEAGGITQQI----------------GATYFPAENI-RERTRELKAN 851 (1326)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~~~------v~~ge~gGITq~i----------------ga~~~~~~~~-~~~~~~v~~~ 851 (1326)
|+.+|-|.-|+||||||++|+... |-.++.|-|..+- |..++..... ......+..
T Consensus 2 pVtvitGFLGsGKTTlL~~lL~~~~g~kiAVIVNEfGEvgID~~~~l~~~~e~~~El~nGCICCT~r~dl~~~~~~L~~- 80 (323)
T COG0523 2 PVTVITGFLGSGKTTLLNHLLANRDGKKIAVIVNEFGEVGIDGGALLSDTGEEVVELTNGCICCTVRDDLLPALERLLR- 80 (323)
T ss_pred CEEEEeecCCCCHHHHHHHHHhccCCCcEEEEEecCccccccCCCccccCCccEEEeCCceEEEeccchhHHHHHHHHh-
Confidence 778999999999999999998543 2233444333331 1122211100 000001111
Q ss_pred cccCCCCEEEEeCCCCcchhhh--------hhhccCccceeEEeeccccCCchhH---HHHHHHHHhcCCcEEEEEeccc
Q 000728 852 ATLKVPGLLVIDTPGHESFTNL--------RSRGSGLCDIAILVVDIMHGLEPQT---IESLNLLKMRNTEFIVALNKVD 920 (1326)
Q Consensus 852 ~~~~~~~I~IIDTPGhe~F~~l--------r~rg~~~aDiaILVVDa~~Gv~~QT---~E~l~~l~~~~vP~IVvINKiD 920 (1326)
....+..+||-|-|...-... ..+..-..|.+|-|||+.+...... .....++... =+|++||+|
T Consensus 81 -~~~~~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~A---D~ivlNK~D 156 (323)
T COG0523 81 -RRDRPDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAFA---DVIVLNKTD 156 (323)
T ss_pred -ccCCCCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHhC---cEEEEeccc
Confidence 122378999999996553222 1122334688999999998665433 2233444433 389999999
Q ss_pred ccc
Q 000728 921 RLY 923 (1326)
Q Consensus 921 ~~~ 923 (1326)
++.
T Consensus 157 lv~ 159 (323)
T COG0523 157 LVD 159 (323)
T ss_pred CCC
Confidence 983
No 369
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=97.83 E-value=5e-05 Score=84.72 Aligned_cols=84 Identities=21% Similarity=0.209 Sum_probs=54.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHcC--ccccccc-CceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcch--
Q 000728 796 ICCIMGHVDTGKTKLLDCIRGT--NVQEGEA-GGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF-- 870 (1326)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~~--~v~~ge~-gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F-- 870 (1326)
+|+|+|..++|||||||+|++. .+..+.. ...|..|-.+..++.. .....|+||||||..+.
T Consensus 9 vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~-------------~~~~~v~~lDteG~~~~~~ 75 (224)
T cd01851 9 VVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKL-------------GKEHAVLLLDTEGTDGRER 75 (224)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccC-------------CCcceEEEEecCCcCcccc
Confidence 5999999999999999999988 5543322 3344444444444321 01235999999995443
Q ss_pred ----hhhhhhccC--ccceeEEeecccc
Q 000728 871 ----TNLRSRGSG--LCDIAILVVDIMH 892 (1326)
Q Consensus 871 ----~~lr~rg~~--~aDiaILVVDa~~ 892 (1326)
..++..++. .++++|+.++.+.
T Consensus 76 ~~~~~~~~~~~l~~llss~~i~n~~~~~ 103 (224)
T cd01851 76 GEFEDDARLFALATLLSSVLIYNSWETI 103 (224)
T ss_pred CchhhhhHHHHHHHHHhCEEEEeccCcc
Confidence 122233333 4899998888753
No 370
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=97.80 E-value=3e-05 Score=83.77 Aligned_cols=54 Identities=20% Similarity=0.303 Sum_probs=38.1
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCcc---------cccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCC
Q 000728 795 PICCIMGHVDTGKTKLLDCIRGTNV---------QEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTP 865 (1326)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~~~v---------~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTP 865 (1326)
..|+|+|.+|+|||||+|+|++... ..+..+|+|.+.-.+.+. ..+.|||||
T Consensus 128 ~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~-------------------~~~~~~DtP 188 (190)
T cd01855 128 GDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLG-------------------NGKKLYDTP 188 (190)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecC-------------------CCCEEEeCc
Confidence 4699999999999999999997543 233445666554333221 148999999
Q ss_pred CC
Q 000728 866 GH 867 (1326)
Q Consensus 866 Gh 867 (1326)
|.
T Consensus 189 G~ 190 (190)
T cd01855 189 GI 190 (190)
T ss_pred CC
Confidence 94
No 371
>cd03694 GTPBP_II Domain II of the GP-1 family of GTPase. This group includes proteins similar to GTPBP1 and GTPBP2. GTPB1 is structurally, related to elongation factor 1 alpha, a key component of protein biosynthesis machinery. Immunohistochemical analyses on mouse tissues revealed that GTPBP1 is expressed in some neurons and smooth muscle cells of various organs as well as macrophages. Immunofluorescence analyses revealed that GTPBP1 is localized exclusively in cytoplasm and shows a diffuse granular network forming a gradient from the nucleus to the periphery of the cells in smooth muscle cell lines and macrophages. No significant difference was observed in the immune response to protein antigen between mutant mice and wild-type mice, suggesting normal function of antigen-presenting cells of the mutant mice. The absence of an eminent phenotype in GTPBP1-deficient mice may be due to functional compensation by GTPBP2, which is similar to GTPBP1 in structure and tissue distribution.
Probab=97.79 E-value=8.4e-05 Score=70.69 Aligned_cols=82 Identities=18% Similarity=0.376 Sum_probs=61.2
Q ss_pred cceeEEEEEEEeCceeEEEEEEEeeEecCCCEEEEccCC-CceeeeeeeccCCCCCceeeecceeecccccccc---cce
Q 000728 1017 LQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQ-GPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAA---QGI 1092 (1326)
Q Consensus 1017 ~~~~VlEvk~~~G~Gtvi~giV~~G~Lr~GD~IVl~g~~-g~~~~~IR~Ll~p~p~~e~rVk~~~~~~k~v~aa---~gv 1092 (1326)
|+++|.++|.+.|.|++++|.|.+|+|++||.+++++.. |. +...+|+++++|+..+..| ..+
T Consensus 1 ~~~~I~~vf~v~g~GtVv~G~v~~G~v~~g~~v~~~P~~~g~-------------~~~~~V~sI~~~~~~~~~a~aGd~v 67 (87)
T cd03694 1 AEFQIDEIYSVPGVGTVVGGTVSKGVIRLGDTLLLGPDQDGS-------------FRPVTVKSIHRNRSPVRVVRAGQSA 67 (87)
T ss_pred CEEEEEeEEEcCCcceEEEEEEecCEEeCCCEEEECCCCCCC-------------EeEEEEEEEEECCeECCEECCCCEE
Confidence 457899999999999999999999999999999987653 21 1234566777777766644 357
Q ss_pred eeeccccccccCCCceEEc
Q 000728 1093 KITAQGLEHAIAGTGLYVV 1111 (1326)
Q Consensus 1093 ~i~~~gl~~~~aG~~~~v~ 1111 (1326)
.|.+.+++......+++++
T Consensus 68 ~l~l~~i~~~~i~~G~vl~ 86 (87)
T cd03694 68 SLALKKIDRSLLRKGMVLV 86 (87)
T ss_pred EEEEcCCCHHHcCCccEEe
Confidence 7778887765555666654
No 372
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=97.79 E-value=5.3e-05 Score=78.05 Aligned_cols=49 Identities=27% Similarity=0.184 Sum_probs=40.7
Q ss_pred hhhccCccceeEEeeccccCCchhHHHHHHHHHhc--CCcEEEEEeccccc
Q 000728 874 RSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMR--NTEFIVALNKVDRL 922 (1326)
Q Consensus 874 r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~--~vP~IVvINKiD~~ 922 (1326)
..+.+..||++|+|+|+.++...+......++... +.|+|+|+||+|+.
T Consensus 5 ~~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~~~~k~~iivlNK~DL~ 55 (141)
T cd01857 5 LWRVVERSDIVVQIVDARNPLLFRPPDLERYVKEVDPRKKNILLLNKADLL 55 (141)
T ss_pred HHHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhccCCCcEEEEEechhcC
Confidence 34567889999999999988877766666777665 89999999999986
No 373
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.77 E-value=4.3e-05 Score=88.34 Aligned_cols=56 Identities=29% Similarity=0.507 Sum_probs=44.0
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCcc-cccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCC
Q 000728 793 RSPICCIMGHVDTGKTKLLDCIRGTNV-QEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH 867 (1326)
Q Consensus 793 R~piV~IlGhvdaGKTTLLd~L~~~~v-~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGh 867 (1326)
+...|+|+|.+|+|||||+|+|++..+ ..+..+|+|.++..+.+. ..+.||||||.
T Consensus 120 ~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~~-------------------~~~~l~DtPGi 176 (287)
T PRK09563 120 RAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQWIKLG-------------------KGLELLDTPGI 176 (287)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEEEEeC-------------------CcEEEEECCCc
Confidence 446799999999999999999998765 567778888886433221 24899999996
No 374
>PRK10867 signal recognition particle protein; Provisional
Probab=97.77 E-value=8.3e-05 Score=90.20 Aligned_cols=64 Identities=22% Similarity=0.241 Sum_probs=37.0
Q ss_pred CCCEEEEeCCCCcchhhh-hh-----hccCccceeEEeeccccCCchhHHHHHHHHHhcCCc-EEEEEeccccc
Q 000728 856 VPGLLVIDTPGHESFTNL-RS-----RGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTE-FIVALNKVDRL 922 (1326)
Q Consensus 856 ~~~I~IIDTPGhe~F~~l-r~-----rg~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~vP-~IVvINKiD~~ 922 (1326)
.+.+.||||||...+... +. ..+..++.++||+|++.| ............ .++ .-|++||+|-.
T Consensus 183 ~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~g--q~av~~a~~F~~-~~~i~giIlTKlD~~ 253 (433)
T PRK10867 183 GYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTG--QDAVNTAKAFNE-ALGLTGVILTKLDGD 253 (433)
T ss_pred CCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccH--HHHHHHHHHHHh-hCCCCEEEEeCccCc
Confidence 467999999995543111 11 112357788999998754 223333333322 233 35678999953
No 375
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.75 E-value=9.4e-05 Score=78.63 Aligned_cols=64 Identities=22% Similarity=0.199 Sum_probs=39.7
Q ss_pred CCCEEEEeCCCCcchhhh----hhh--ccCccceeEEeeccccCCchhHHHHH-HHHHhcCCcEEEEEeccccc
Q 000728 856 VPGLLVIDTPGHESFTNL----RSR--GSGLCDIAILVVDIMHGLEPQTIESL-NLLKMRNTEFIVALNKVDRL 922 (1326)
Q Consensus 856 ~~~I~IIDTPGhe~F~~l----r~r--g~~~aDiaILVVDa~~Gv~~QT~E~l-~~l~~~~vP~IVvINKiD~~ 922 (1326)
.+.++||||||...+... ... .+..+|.+|||+++..+. .+...+ .++...+ ..-+++||+|..
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~--~~~~~~~~~~~~~~-~~~viltk~D~~ 152 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQ--DAVNQAKAFNEALG-ITGVILTKLDGD 152 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCCh--HHHHHHHHHHhhCC-CCEEEEECCcCC
Confidence 456999999998643211 111 123489999999986532 333333 3334445 356788999986
No 376
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.74 E-value=6.2e-05 Score=86.98 Aligned_cols=101 Identities=21% Similarity=0.222 Sum_probs=67.9
Q ss_pred eCCCCcch-hhhhhhccCccceeEEeeccccCCchhHHHHHHHHHhcCCcEEEEEeccccccCcccCCCchHHHHHHHhh
Q 000728 863 DTPGHESF-TNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQN 941 (1326)
Q Consensus 863 DTPGhe~F-~~lr~rg~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~ 941 (1326)
--|||-.= .......+..+|++|+|+|+..++.........++. +.|+|+|+||+|+... .
T Consensus 6 wfpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~~~l~~~~~--~kp~iiVlNK~DL~~~-------~--------- 67 (287)
T PRK09563 6 WFPGHMAKARREIKENLKLVDVVIEVLDARIPLSSENPMIDKIIG--NKPRLLILNKSDLADP-------E--------- 67 (287)
T ss_pred CcHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCChhHHHHhC--CCCEEEEEEchhcCCH-------H---------
Confidence 34888543 334456788899999999998877655544444443 7899999999998520 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHHHHH
Q 000728 942 TDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQK 1005 (1326)
Q Consensus 942 ~~~~~e~~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~q~ 1005 (1326)
.+......+...+ ++++++||.+|.|+..|+..|..+++.
T Consensus 68 ---------~~~~~~~~~~~~~---------------~~vi~vSa~~~~gi~~L~~~l~~~l~~ 107 (287)
T PRK09563 68 ---------VTKKWIEYFEEQG---------------IKALAINAKKGQGVKKILKAAKKLLKE 107 (287)
T ss_pred ---------HHHHHHHHHHHcC---------------CeEEEEECCCcccHHHHHHHHHHHHHH
Confidence 0011111121111 468999999999999999988877654
No 377
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=97.74 E-value=4.8e-05 Score=81.70 Aligned_cols=125 Identities=23% Similarity=0.256 Sum_probs=62.5
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcC-----c--ccccccCceee------eeee--eEeccccch-----hhhhhhcccccc
Q 000728 795 PICCIMGHVDTGKTKLLDCIRGT-----N--VQEGEAGGITQ------QIGA--TYFPAENIR-----ERTRELKANATL 854 (1326)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~~-----~--v~~ge~gGITq------~iga--~~~~~~~~~-----~~~~~v~~~~~~ 854 (1326)
|+++|.|..||||||||++|+.. + +-.++.+.+.. ..|. ..+....+. .....+..-...
T Consensus 1 Pv~ii~GfLGsGKTTli~~ll~~~~~~~~~~vI~ne~g~~~iD~~~l~~~~~~v~~l~~gcicc~~~~~~~~~l~~l~~~ 80 (178)
T PF02492_consen 1 PVIIITGFLGSGKTTLINHLLKRNRQGERVAVIVNEFGEVNIDAELLQEDGVPVVELNNGCICCTLRDDLVEALRRLLRE 80 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHTTTS-EEEEECSTTSTHHHHHHHHTTT-EEEEECTTTESS-TTS-HHHHHHHHCCC
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHhcCCceeEEEEccccccccchhhhcccceEEEEecCCCcccccHHHHHHHHHHHHHh
Confidence 78999999999999999999941 1 11122221110 0011 111111000 000011111112
Q ss_pred C--CCCEEEEeCCCCcchhhhh-----hhccCccceeEEeeccccCCchhHHH--HHHHHHhcCCcEEEEEeccccc
Q 000728 855 K--VPGLLVIDTPGHESFTNLR-----SRGSGLCDIAILVVDIMHGLEPQTIE--SLNLLKMRNTEFIVALNKVDRL 922 (1326)
Q Consensus 855 ~--~~~I~IIDTPGhe~F~~lr-----~rg~~~aDiaILVVDa~~Gv~~QT~E--~l~~l~~~~vP~IVvINKiD~~ 922 (1326)
. .+.+.||-|.|......+. ....-..+.+|.|||+.+-....+.. ...++... =+|++||+|++
T Consensus 81 ~~~~~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~A---DvIvlnK~D~~ 154 (178)
T PF02492_consen 81 YEERPDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIAFA---DVIVLNKIDLV 154 (178)
T ss_dssp CHGC-SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHCT----SEEEEE-GGGH
T ss_pred cCCCcCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhcchhc---CEEEEeccccC
Confidence 2 4689999999976655551 11123368899999996532222221 22333333 48899999997
No 378
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=97.74 E-value=2e-05 Score=83.25 Aligned_cols=27 Identities=19% Similarity=0.470 Sum_probs=23.9
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCc
Q 000728 792 LRSPICCIMGHVDTGKTKLLDCIRGTN 818 (1326)
Q Consensus 792 ~R~piV~IlGhvdaGKTTLLd~L~~~~ 818 (1326)
+++.+++|+|+.|+|||||+|.|+...
T Consensus 33 l~~k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 33 LKGKTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp HTTSEEEEECSTTSSHHHHHHHHHTSS
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 566789999999999999999999763
No 379
>PRK12288 GTPase RsgA; Reviewed
Probab=97.73 E-value=0.00025 Score=84.04 Aligned_cols=87 Identities=20% Similarity=0.259 Sum_probs=57.9
Q ss_pred cCccceeEEeeccccCCchhHHHHH-HHHHhcCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHHHHHHHHHHHH
Q 000728 878 SGLCDIAILVVDIMHGLEPQTIESL-NLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIV 956 (1326)
Q Consensus 878 ~~~aDiaILVVDa~~Gv~~QT~E~l-~~l~~~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~e~~~~l~~I~ 956 (1326)
+.++|.+|||++....+.+..+..| ..+...++|+|||+||+|+...+ . .. .+....
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~~~i~~VIVlNK~DL~~~~------~-~~---------------~~~~~~ 175 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACETLGIEPLIVLNKIDLLDDE------G-RA---------------FVNEQL 175 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEEECccCCCcH------H-HH---------------HHHHHH
Confidence 4669999999998766666555444 34455689999999999996310 0 00 001111
Q ss_pred HHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHH
Q 000728 957 TQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1001 (1326)
Q Consensus 957 ~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~ 1001 (1326)
..+... + +++|+|||++|.||.+|+.+|..
T Consensus 176 ~~y~~~-------------g--~~v~~vSA~tg~GideL~~~L~~ 205 (347)
T PRK12288 176 DIYRNI-------------G--YRVLMVSSHTGEGLEELEAALTG 205 (347)
T ss_pred HHHHhC-------------C--CeEEEEeCCCCcCHHHHHHHHhh
Confidence 111111 1 48999999999999999988864
No 380
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.73 E-value=0.00011 Score=88.94 Aligned_cols=63 Identities=22% Similarity=0.226 Sum_probs=37.6
Q ss_pred CCCEEEEeCCCCcchhhhhh------hccCccceeEEeeccccCCchhHHHHHHHHH-hcCCcEEEEEecccc
Q 000728 856 VPGLLVIDTPGHESFTNLRS------RGSGLCDIAILVVDIMHGLEPQTIESLNLLK-MRNTEFIVALNKVDR 921 (1326)
Q Consensus 856 ~~~I~IIDTPGhe~F~~lr~------rg~~~aDiaILVVDa~~Gv~~QT~E~l~~l~-~~~vP~IVvINKiD~ 921 (1326)
.+.+.||||||...+..... .....+|.++||+|++.| ........... ..++ .=|++||+|.
T Consensus 182 ~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg--q~~~~~a~~f~~~v~i-~giIlTKlD~ 251 (428)
T TIGR00959 182 GFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTG--QDAVNTAKTFNERLGL-TGVVLTKLDG 251 (428)
T ss_pred CCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccch--HHHHHHHHHHHhhCCC-CEEEEeCccC
Confidence 45799999999544321111 123357889999999754 23333333333 2232 3566999995
No 381
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=97.73 E-value=5.8e-05 Score=86.75 Aligned_cols=56 Identities=29% Similarity=0.476 Sum_probs=42.7
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCc-ccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCC
Q 000728 793 RSPICCIMGHVDTGKTKLLDCIRGTN-VQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH 867 (1326)
Q Consensus 793 R~piV~IlGhvdaGKTTLLd~L~~~~-v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGh 867 (1326)
+...|+|+|.+|+|||||+|+|++.. ...+..+|+|.....+.+. ..++||||||.
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~~-------------------~~~~l~DtPG~ 173 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQWIKLS-------------------DGLELLDTPGI 173 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceEEEEeC-------------------CCEEEEECCCc
Confidence 45679999999999999999999766 3456677877765433221 24899999996
No 382
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.72 E-value=0.00018 Score=86.24 Aligned_cols=128 Identities=18% Similarity=0.179 Sum_probs=62.8
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCc-ccccccC-ceeee---eeee----------EeccccchhhhhhhccccccCC
Q 000728 792 LRSPICCIMGHVDTGKTKLLDCIRGTN-VQEGEAG-GITQQ---IGAT----------YFPAENIRERTRELKANATLKV 856 (1326)
Q Consensus 792 ~R~piV~IlGhvdaGKTTLLd~L~~~~-v~~ge~g-GITq~---iga~----------~~~~~~~~~~~~~v~~~~~~~~ 856 (1326)
.+..+|+|+|++|+||||++..|.... ...+... -++.+ +++. .++...... ...+.....-..
T Consensus 221 ~~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~-~~~l~~~l~~~~ 299 (432)
T PRK12724 221 NQRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKD-IKKFKETLARDG 299 (432)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHH-HHHHHHHHHhCC
Confidence 455679999999999999999996422 1111100 01111 0000 000000000 000000001134
Q ss_pred CCEEEEeCCCCcchhh----hhhhcc-----CccceeEEeeccccCCchhHHHHHHHHHhcCCcEEEEEeccccc
Q 000728 857 PGLLVIDTPGHESFTN----LRSRGS-----GLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRL 922 (1326)
Q Consensus 857 ~~I~IIDTPGhe~F~~----lr~rg~-----~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~vP~IVvINKiD~~ 922 (1326)
..+.||||||+..... .+...+ ....-.+||+|++.+.. +....+......+ +-=+++||+|-.
T Consensus 300 ~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~-~~~~~~~~f~~~~-~~glIlTKLDEt 372 (432)
T PRK12724 300 SELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYH-HTLTVLKAYESLN-YRRILLTKLDEA 372 (432)
T ss_pred CCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHH-HHHHHHHHhcCCC-CCEEEEEcccCC
Confidence 5799999999754311 111111 22456889999987532 2233333333333 234678999975
No 383
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.71 E-value=7.4e-05 Score=78.07 Aligned_cols=58 Identities=17% Similarity=0.231 Sum_probs=38.2
Q ss_pred CCCEEEEeCCCCcchhhhhhhccCccceeEEeeccccCCchhHHHHHHHHHhcCCcEEEEEeccc
Q 000728 856 VPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVD 920 (1326)
Q Consensus 856 ~~~I~IIDTPGhe~F~~lr~rg~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~vP~IVvINKiD 920 (1326)
.+.+.||||||..... ...+..+|.+|+|+...- ...+..+.. .....--+++|||+|
T Consensus 91 ~~D~iiIDtaG~~~~~---~~~~~~Ad~~ivv~tpe~---~D~y~~~k~-~~~~~~~~~~~~k~~ 148 (148)
T cd03114 91 GFDVIIVETVGVGQSE---VDIASMADTTVVVMAPGA---GDDIQAIKA-GIMEIADIVVVNKAD 148 (148)
T ss_pred CCCEEEEECCccChhh---hhHHHhCCEEEEEECCCc---hhHHHHhhh-hHhhhcCEEEEeCCC
Confidence 5689999999964322 347788999999987762 222322222 233344588999998
No 384
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.71 E-value=2.7e-05 Score=92.70 Aligned_cols=108 Identities=16% Similarity=0.162 Sum_probs=67.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCc------ccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcc
Q 000728 796 ICCIMGHVDTGKTKLLDCIRGTN------VQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES 869 (1326)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~~~------v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~ 869 (1326)
.|.|+|.+|+|||||+|+|++.. +..+..+|+|.++..+.+ ..++.||||||...
T Consensus 156 ~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~-------------------~~~~~l~DtPG~~~ 216 (360)
T TIGR03597 156 DVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPL-------------------DDGHSLYDTPGIIN 216 (360)
T ss_pred eEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEe-------------------CCCCEEEECCCCCC
Confidence 59999999999999999999743 234455677766442221 12478999999654
Q ss_pred hhhhhh----------hccCccceeEEeeccccCCchhHHHHHHHHHhcCCcEEEEEeccccc
Q 000728 870 FTNLRS----------RGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRL 922 (1326)
Q Consensus 870 F~~lr~----------rg~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~vP~IVvINKiD~~ 922 (1326)
...+.. .-.......+++++..+.+...-+..|..+...+..|++++++.+.+
T Consensus 217 ~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~q~~~~ggl~~~d~~~~~~~~~~~~~~~~~~~ 279 (360)
T TIGR03597 217 SHQMAHYLDKKDLKYITPKKEIKPKTYQLNPNQTLFLGGLARFDYLKGEKTSFTFYVSNELNI 279 (360)
T ss_pred hhHhhhhcCHHHHhhcCCCCccCceEEEeCCCCEEEEceEEEEEEecCCceEEEEEccCCcee
Confidence 322111 11123455677777665444333333334444567788888888865
No 385
>cd03697 EFTU_II EFTU_II: Elongation factor Tu domain II. Elongation factors Tu (EF-Tu) are three-domain GTPases with an essential function in the elongation phase of mRNA translation. The GTPase center of EF-Tu is in the N-terminal domain (domain I), also known as the catalytic or G-domain. The G-domain is composed of about 200 amino acid residues, arranged into a predominantly parallel six-stranded beta-sheet core surrounded by seven a-helices. Non-catalytic domains II and III are beta-barrels of seven and six, respectively, antiparallel beta-strands that share an extended interface. Either non-catalytic domain is composed of about 100 amino acid residues. EF-Tu proteins exist in two principal conformations: in a compact one, EF-Tu*GTP, with tight interfaces between all three domains and a high affinity for aminoacyl-tRNA, and in an open one, EF-Tu*GDP, with essentially no G-domain-domain II interactions and a low affinity for aminoacyl-tRNA. EF-Tu has approximately a 100-fold higher
Probab=97.71 E-value=0.00011 Score=69.87 Aligned_cols=83 Identities=19% Similarity=0.394 Sum_probs=63.2
Q ss_pred cceeEEEEEEEeCceeEEEEEEEeeEecCCCEEEEccCCCceeeeeeeccCCCCCceeeecceeeccccccccc---cee
Q 000728 1017 LQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAAQ---GIK 1093 (1326)
Q Consensus 1017 ~~~~VlEvk~~~G~Gtvi~giV~~G~Lr~GD~IVl~g~~g~~~~~IR~Ll~p~p~~e~rVk~~~~~~k~v~aa~---gv~ 1093 (1326)
|+++|.++|.+.|.|+++.|.|.+|+|+.||.|.++++... ....|+++++|+..+..|. .+.
T Consensus 1 ~r~~V~~v~~~~g~G~vv~G~v~~G~v~~gd~v~~~p~~~~--------------~~~~V~si~~~~~~~~~a~~G~~v~ 66 (87)
T cd03697 1 FLMPIEDVFSIPGRGTVVTGRIERGTIKVGDEVEIVGFGET--------------LKTTVTGIEMFRKTLDEAEAGDNVG 66 (87)
T ss_pred CEeeEEEEEeCCCcEEEEEEEECCCCCccCCEEEEeCCCCC--------------ceEEEEEEEECCcCCCEECCCCEEE
Confidence 46789999999999999999999999999999988764211 2345667777777777553 478
Q ss_pred eeccccccccCCCceEEcCC
Q 000728 1094 ITAQGLEHAIAGTGLYVVGP 1113 (1326)
Q Consensus 1094 i~~~gl~~~~aG~~~~v~~~ 1113 (1326)
|.+.+++......+++++.+
T Consensus 67 l~l~~~~~~~v~rG~vl~~~ 86 (87)
T cd03697 67 VLLRGVKREDVERGMVLAKP 86 (87)
T ss_pred EEECCCCHHHcCCccEEecC
Confidence 88888876556667776654
No 386
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=97.70 E-value=7.5e-05 Score=79.51 Aligned_cols=56 Identities=32% Similarity=0.611 Sum_probs=40.8
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCcc-cccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCC
Q 000728 793 RSPICCIMGHVDTGKTKLLDCIRGTNV-QEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH 867 (1326)
Q Consensus 793 R~piV~IlGhvdaGKTTLLd~L~~~~v-~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGh 867 (1326)
+.+.|+|+|.+++|||||+++|++.++ ..+...|+|.+...+.+. ..+.||||||.
T Consensus 114 ~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~~~~~-------------------~~~~~iDtpG~ 170 (171)
T cd01856 114 RGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQWIKIS-------------------PGIYLLDTPGI 170 (171)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEEEEec-------------------CCEEEEECCCC
Confidence 446799999999999999999998765 334445666554433221 24899999996
No 387
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.70 E-value=0.00034 Score=84.58 Aligned_cols=127 Identities=17% Similarity=0.228 Sum_probs=63.5
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCcccc-c-ccCc-eeee---eeee----------EeccccchhhhhhhccccccCC
Q 000728 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQE-G-EAGG-ITQQ---IGAT----------YFPAENIRERTRELKANATLKV 856 (1326)
Q Consensus 793 R~piV~IlGhvdaGKTTLLd~L~~~~v~~-g-e~gG-ITq~---iga~----------~~~~~~~~~~~~~v~~~~~~~~ 856 (1326)
+..+|+|+|..|+|||||+..|.+..+.. + ...+ |+.+ +|+. .++.............-..+..
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~ 269 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRG 269 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcC
Confidence 45689999999999999999886532110 1 1111 1111 1110 0010000000000000112345
Q ss_pred CCEEEEeCCCCcchhhh----hh--hccCccceeEEeeccccCCchhHHHH-HHHHHhcCCcEEEEEeccccc
Q 000728 857 PGLLVIDTPGHESFTNL----RS--RGSGLCDIAILVVDIMHGLEPQTIES-LNLLKMRNTEFIVALNKVDRL 922 (1326)
Q Consensus 857 ~~I~IIDTPGhe~F~~l----r~--rg~~~aDiaILVVDa~~Gv~~QT~E~-l~~l~~~~vP~IVvINKiD~~ 922 (1326)
..+.||||+|....... .. .......-.+||++++.+ .+++.. +......+ +-=|++||+|-.
T Consensus 270 ~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~--~~~~~~~~~~f~~~~-~~~~I~TKlDEt 339 (420)
T PRK14721 270 KHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSS--GDTLDEVISAYQGHG-IHGCIITKVDEA 339 (420)
T ss_pred CCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCC--HHHHHHHHHHhcCCC-CCEEEEEeeeCC
Confidence 67999999996543221 11 122334567899998753 334333 33333333 234678999975
No 388
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=97.69 E-value=0.00018 Score=97.53 Aligned_cols=118 Identities=24% Similarity=0.260 Sum_probs=68.1
Q ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHcCccccccc--Cceeeeeeee-EeccccchhhhhhhccccccCCCCEEEEeCCCC
Q 000728 791 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEA--GGITQQIGAT-YFPAENIRERTRELKANATLKVPGLLVIDTPGH 867 (1326)
Q Consensus 791 ~~R~piV~IlGhvdaGKTTLLd~L~~~~v~~ge~--gGITq~iga~-~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGh 867 (1326)
...-|..+|||.+|+||||||.+. +-.+.-... ..-+..++.+ .|.| |-.....||||+|.
T Consensus 108 lY~LPWYlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~w---------------wf~~~avliDtaG~ 171 (1169)
T TIGR03348 108 LYDLPWYLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDW---------------WFTDEAVLIDTAGR 171 (1169)
T ss_pred hhcCCCEEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccce---------------EecCCEEEEcCCCc
Confidence 456688999999999999999987 222221110 0001111111 0111 12235789999992
Q ss_pred c---------------chhhhh--hhccCccceeEEeeccccCCc--hhH--------HHHHHHH---HhcCCcEEEEEe
Q 000728 868 E---------------SFTNLR--SRGSGLCDIAILVVDIMHGLE--PQT--------IESLNLL---KMRNTEFIVALN 917 (1326)
Q Consensus 868 e---------------~F~~lr--~rg~~~aDiaILVVDa~~Gv~--~QT--------~E~l~~l---~~~~vP~IVvIN 917 (1326)
. .|..+. .|--+..|+|||+||+.+-+. ++. +..|..+ ....+|+.|++|
T Consensus 172 y~~~~~~~~~~~~~W~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~T 251 (1169)
T TIGR03348 172 YTTQDSDPEEDAAAWLGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLT 251 (1169)
T ss_pred cccCCCcccccHHHHHHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEe
Confidence 1 122222 233466999999999986443 111 1111212 223689999999
Q ss_pred ccccccC
Q 000728 918 KVDRLYG 924 (1326)
Q Consensus 918 KiD~~~~ 924 (1326)
|||++.+
T Consensus 252 k~Dll~G 258 (1169)
T TIGR03348 252 KADLLAG 258 (1169)
T ss_pred cchhhcC
Confidence 9999866
No 389
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.66 E-value=0.00041 Score=83.25 Aligned_cols=66 Identities=18% Similarity=0.052 Sum_probs=38.1
Q ss_pred CCCCEEEEeCCCCcchhhh----hhhccCc--cc-eeEEeeccccCCchhHHHHHHHHHhcCCcEEEEEeccccc
Q 000728 855 KVPGLLVIDTPGHESFTNL----RSRGSGL--CD-IAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRL 922 (1326)
Q Consensus 855 ~~~~I~IIDTPGhe~F~~l----r~rg~~~--aD-iaILVVDa~~Gv~~QT~E~l~~l~~~~vP~IVvINKiD~~ 922 (1326)
....+.||||||+..+..+ ....+.. ++ -++||+|++.+.... .+.+......+ +-=|++||+|-.
T Consensus 253 ~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~-~~~~~~~~~~~-~~~~I~TKlDet 325 (388)
T PRK12723 253 KDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDV-KEIFHQFSPFS-YKTVIFTKLDET 325 (388)
T ss_pred CCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHH-HHHHHHhcCCC-CCEEEEEeccCC
Confidence 4567999999996543221 1112221 23 589999998863222 23333333222 345678999975
No 390
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.64 E-value=0.00031 Score=80.48 Aligned_cols=128 Identities=20% Similarity=0.126 Sum_probs=63.6
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCcccccc-cCceeee---e-------------eeeEeccccchhhhhhhccccccC
Q 000728 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGE-AGGITQQ---I-------------GATYFPAENIRERTRELKANATLK 855 (1326)
Q Consensus 793 R~piV~IlGhvdaGKTTLLd~L~~~~v~~ge-~gGITq~---i-------------ga~~~~~~~~~~~~~~v~~~~~~~ 855 (1326)
+.++|+|+|.+|+|||||+..|...-...+. .+-|+.+ + +..++...........+..-....
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~ 153 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 153 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcC
Confidence 5578999999999999999988643211111 1111111 0 100000000000000000000112
Q ss_pred CCCEEEEeCCCCcchhhh----hh--hccCccceeEEeeccccCCchhHHHHHHHHHhcCCcEEEEEeccccc
Q 000728 856 VPGLLVIDTPGHESFTNL----RS--RGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRL 922 (1326)
Q Consensus 856 ~~~I~IIDTPGhe~F~~l----r~--rg~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~vP~IVvINKiD~~ 922 (1326)
...+.||||||+..+... +. .....+|.++||++++.+. .+....+......+ +-=|++||+|-.
T Consensus 154 ~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~-~d~~~~~~~f~~~~-~~~~I~TKlDet 224 (270)
T PRK06731 154 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS-KDMIEIITNFKDIH-IDGIVFTKFDET 224 (270)
T ss_pred CCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCH-HHHHHHHHHhCCCC-CCEEEEEeecCC
Confidence 457999999997643221 11 1223467789999986522 12223334443333 234678999975
No 391
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=97.64 E-value=0.0003 Score=86.78 Aligned_cols=130 Identities=20% Similarity=0.273 Sum_probs=74.9
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCcccccccCceeeee-------ee-eEeccccchhhh----h-----hhcc-----
Q 000728 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQI-------GA-TYFPAENIRERT----R-----ELKA----- 850 (1326)
Q Consensus 793 R~piV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~i-------ga-~~~~~~~~~~~~----~-----~v~~----- 850 (1326)
+.-+|+|.|.+++||||++|+++...+-.+..+-+|.-. |. .+.-++...+.. . .++.
T Consensus 108 ~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~~ 187 (749)
T KOG0448|consen 108 RHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDLG 187 (749)
T ss_pred cccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcccccC
Confidence 556799999999999999999997665433332222100 00 000000000000 0 0000
Q ss_pred -----ccccC-------CCCEEEEeCCCCc---chhhhhhhccCccceeEEeeccccCCchhHHHHHHHHHhcCCcEEEE
Q 000728 851 -----NATLK-------VPGLLVIDTPGHE---SFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVA 915 (1326)
Q Consensus 851 -----~~~~~-------~~~I~IIDTPGhe---~F~~lr~rg~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~vP~IVv 915 (1326)
.+.|+ ...|.+||.||.. .++.......-.+|++|||+.+-.-++.....++......+-.|+|+
T Consensus 188 ~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~sek~Ff~~vs~~KpniFIl 267 (749)
T KOG0448|consen 188 AGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEKQFFHKVSEEKPNIFIL 267 (749)
T ss_pred cceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHHHHHHHHhhccCCcEEEE
Confidence 00011 1258999999953 34555555666799999999998766655555555554443346667
Q ss_pred Eeccccc
Q 000728 916 LNKVDRL 922 (1326)
Q Consensus 916 INKiD~~ 922 (1326)
.||.|..
T Consensus 268 nnkwDas 274 (749)
T KOG0448|consen 268 NNKWDAS 274 (749)
T ss_pred echhhhh
Confidence 7888975
No 392
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.64 E-value=0.00028 Score=85.77 Aligned_cols=65 Identities=15% Similarity=0.029 Sum_probs=37.2
Q ss_pred CCCEEEEeCCCCcchh----hhhhhc---cCccceeEEeeccccCCchhHHHHHHHHHhcCCcEEEEEeccccc
Q 000728 856 VPGLLVIDTPGHESFT----NLRSRG---SGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRL 922 (1326)
Q Consensus 856 ~~~I~IIDTPGhe~F~----~lr~rg---~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~vP~IVvINKiD~~ 922 (1326)
.+.+.||||||+..+. ...... .....-++||++++.+. ......+..+...++ --|++||+|..
T Consensus 299 ~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~-~~l~~~~~~f~~~~~-~~vI~TKlDet 370 (424)
T PRK05703 299 DCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKY-EDLKDIYKHFSRLPL-DGLIFTKLDET 370 (424)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCH-HHHHHHHHHhCCCCC-CEEEEeccccc
Confidence 4679999999975542 111111 22345678888886532 122233344443332 35789999975
No 393
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=97.60 E-value=0.00012 Score=86.64 Aligned_cols=97 Identities=14% Similarity=0.057 Sum_probs=63.9
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCcc-cccccCce--eeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcc--
Q 000728 795 PICCIMGHVDTGKTKLLDCIRGTNV-QEGEAGGI--TQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES-- 869 (1326)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~~~v-~~ge~gGI--Tq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~-- 869 (1326)
..|+|+|.+++|||||+++|++... .....+.. ...+|...++.......+..++ ........+.|+|+||...
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~-~~~~~~a~i~~~DiaGlv~gA 81 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIK-PEKVPPTTTEFVDIAGLVGGA 81 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhC-CcCcCCceEEEEeccccccch
Confidence 3589999999999999999998877 55544444 4556666555432211111111 1111223589999999432
Q ss_pred -----hhhhhhhccCccceeEEeecccc
Q 000728 870 -----FTNLRSRGSGLCDIAILVVDIMH 892 (1326)
Q Consensus 870 -----F~~lr~rg~~~aDiaILVVDa~~ 892 (1326)
+.+.....++.||++++||++..
T Consensus 82 s~g~Glgn~fL~~ir~~d~l~hVvr~f~ 109 (368)
T TIGR00092 82 SKGEGLGNQFLANIREVDIIQHVVRCFE 109 (368)
T ss_pred hcccCcchHHHHHHHhCCEEEEEEeCCC
Confidence 45556667889999999999853
No 394
>cd03698 eRF3_II_like eRF3_II_like: domain similar to domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM
Probab=97.58 E-value=0.00027 Score=66.54 Aligned_cols=79 Identities=15% Similarity=0.330 Sum_probs=58.4
Q ss_pred ccceeEEEEEEEeCceeEEEEEEEeeEecCCCEEEEccCCCceeeeeeeccCCCCCceeeecceeecccccccc---cce
Q 000728 1016 ELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAA---QGI 1092 (1326)
Q Consensus 1016 ~~~~~VlEvk~~~G~Gtvi~giV~~G~Lr~GD~IVl~g~~g~~~~~IR~Ll~p~p~~e~rVk~~~~~~k~v~aa---~gv 1092 (1326)
||+++|..+|.+. .|++++|.|.+|+|++||.|.+++++ . ..+|+++++|+..+..| ..+
T Consensus 1 p~r~~V~~v~~~~-~g~vv~G~v~~G~i~~Gd~v~i~P~~--~--------------~~~V~si~~~~~~~~~a~aGd~v 63 (83)
T cd03698 1 PFRLPISDKYKDQ-GGTVVSGKVESGSIQKGDTLLVMPSK--E--------------SVEVKSIYVDDEEVDYAVAGENV 63 (83)
T ss_pred CeEEEEEeEEEcC-CCcEEEEEEeeeEEeCCCEEEEeCCC--c--------------EEEEEEEEECCeECCEECCCCEE
Confidence 4788999999888 99999999999999999999987654 1 24566667777666544 347
Q ss_pred eeeccccccccCCCceEEc
Q 000728 1093 KITAQGLEHAIAGTGLYVV 1111 (1326)
Q Consensus 1093 ~i~~~gl~~~~aG~~~~v~ 1111 (1326)
.|.+.+++......+.+++
T Consensus 64 ~~~l~~~~~~~v~~G~vl~ 82 (83)
T cd03698 64 RLKLKGIDEEDISPGDVLC 82 (83)
T ss_pred EEEECCCCHHHCCCCCEEe
Confidence 7777777654445555543
No 395
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=97.58 E-value=0.00015 Score=79.13 Aligned_cols=113 Identities=18% Similarity=0.180 Sum_probs=72.1
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCccc-ccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchhhh
Q 000728 795 PICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL 873 (1326)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~~~v~-~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~~l 873 (1326)
..|.+||..|+|||+|=..+...-++ +....|-|+++-...+.+- .+--+++||+.|++.|...
T Consensus 5 kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~Rfl---------------Gnl~LnlwDcGgqe~fmen 69 (295)
T KOG3886|consen 5 KKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFL---------------GNLVLNLWDCGGQEEFMEN 69 (295)
T ss_pred ceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhh---------------hhheeehhccCCcHHHHHH
Confidence 35999999999999987766543322 1223344444432222111 1123899999999987544
Q ss_pred -----hhhccCccceeEEeeccccCCchhHHH----HHHHHHhc--CCcEEEEEeccccc
Q 000728 874 -----RSRGSGLCDIAILVVDIMHGLEPQTIE----SLNLLKMR--NTEFIVALNKVDRL 922 (1326)
Q Consensus 874 -----r~rg~~~aDiaILVVDa~~Gv~~QT~E----~l~~l~~~--~vP~IVvINKiD~~ 922 (1326)
+...++..+++|+|+|+...-....+. .|..+... ...+++.+.|+|++
T Consensus 70 ~~~~q~d~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv 129 (295)
T KOG3886|consen 70 YLSSQEDNIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLV 129 (295)
T ss_pred HHhhcchhhheeheeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEeechhc
Confidence 345788899999999997654333333 33334333 34688999999997
No 396
>PRK01889 GTPase RsgA; Reviewed
Probab=97.56 E-value=0.00023 Score=84.80 Aligned_cols=82 Identities=22% Similarity=0.305 Sum_probs=58.1
Q ss_pred cCccceeEEeeccccCCchhHHH-HHHHHHhcCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHHHHHHHHHHHH
Q 000728 878 SGLCDIAILVVDIMHGLEPQTIE-SLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIV 956 (1326)
Q Consensus 878 ~~~aDiaILVVDa~~Gv~~QT~E-~l~~l~~~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~e~~~~l~~I~ 956 (1326)
+.++|.++||+++...+.+..++ +|..+...++|.|||+||+|++.. . ....
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~~~i~piIVLNK~DL~~~--------~-------------------~~~~ 162 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWESGAEPVIVLTKADLCED--------A-------------------EEKI 162 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHHcCCCEEEEEEChhcCCC--------H-------------------HHHH
Confidence 47799999999998777775554 455667789999999999999621 0 0011
Q ss_pred HHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHH
Q 000728 957 TQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLL 999 (1326)
Q Consensus 957 ~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L 999 (1326)
..+.... ..+++|++|+.+|.|+..|..+|
T Consensus 163 ~~~~~~~-------------~g~~Vi~vSa~~g~gl~~L~~~L 192 (356)
T PRK01889 163 AEVEALA-------------PGVPVLAVSALDGEGLDVLAAWL 192 (356)
T ss_pred HHHHHhC-------------CCCcEEEEECCCCccHHHHHHHh
Confidence 1121111 12589999999999999887765
No 397
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.55 E-value=0.00031 Score=89.83 Aligned_cols=126 Identities=21% Similarity=0.274 Sum_probs=62.6
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCcc-cccc--cCce---eeeeeeeE----------eccccchhhhhhhc-cccccCC
Q 000728 794 SPICCIMGHVDTGKTKLLDCIRGTNV-QEGE--AGGI---TQQIGATY----------FPAENIRERTRELK-ANATLKV 856 (1326)
Q Consensus 794 ~piV~IlGhvdaGKTTLLd~L~~~~v-~~ge--~gGI---Tq~iga~~----------~~~~~~~~~~~~v~-~~~~~~~ 856 (1326)
.-+|+|||+.|+||||++..|..... ..+. ..-| |..+|+.. +++..... ...+. .-..+..
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~-~~~l~~al~~~~~ 263 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKD-AADLRFALAALGD 263 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCC-HHHHHHHHHHhcC
Confidence 45899999999999999999975432 1111 0111 12222110 00000000 00000 0012344
Q ss_pred CCEEEEeCCCCcchhh-h---hh--hccCccceeEEeeccccCCchhHHH-HHHHHHhc-CC-cEEEEEeccccc
Q 000728 857 PGLLVIDTPGHESFTN-L---RS--RGSGLCDIAILVVDIMHGLEPQTIE-SLNLLKMR-NT-EFIVALNKVDRL 922 (1326)
Q Consensus 857 ~~I~IIDTPGhe~F~~-l---r~--rg~~~aDiaILVVDa~~Gv~~QT~E-~l~~l~~~-~v-P~IVvINKiD~~ 922 (1326)
..++||||||...... + .. ......+-++||+|++.+ .+++. ++...+.. .+ +-=|++||+|-.
T Consensus 264 ~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~--~~~l~~i~~~f~~~~~~~i~glIlTKLDEt 336 (767)
T PRK14723 264 KHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASH--GDTLNEVVHAYRHGAGEDVDGCIITKLDEA 336 (767)
T ss_pred CCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCc--HHHHHHHHHHHhhcccCCCCEEEEeccCCC
Confidence 5799999999433211 1 11 113346678999999853 33332 33333222 11 234679999975
No 398
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.55 E-value=0.00044 Score=84.82 Aligned_cols=25 Identities=24% Similarity=0.377 Sum_probs=21.5
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcC
Q 000728 793 RSPICCIMGHVDTGKTKLLDCIRGT 817 (1326)
Q Consensus 793 R~piV~IlGhvdaGKTTLLd~L~~~ 817 (1326)
+..+|+|||..|+||||++..|...
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~~ 279 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAAR 279 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHHH
Confidence 3458999999999999999999753
No 399
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=97.53 E-value=0.00071 Score=80.18 Aligned_cols=25 Identities=24% Similarity=0.523 Sum_probs=22.4
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcC
Q 000728 793 RSPICCIMGHVDTGKTKLLDCIRGT 817 (1326)
Q Consensus 793 R~piV~IlGhvdaGKTTLLd~L~~~ 817 (1326)
|-|+..|.|..|+||||||++|+..
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~ 27 (341)
T TIGR02475 3 KIPVTIVTGFLGAGKTTLIRHLLQN 27 (341)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhc
Confidence 5688999999999999999999853
No 400
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=97.49 E-value=0.00054 Score=80.39 Aligned_cols=127 Identities=23% Similarity=0.203 Sum_probs=67.9
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCc------ccccccCceeee---------------eeeeEecccc-chhhhhhhcc
Q 000728 793 RSPICCIMGHVDTGKTKLLDCIRGTN------VQEGEAGGITQQ---------------IGATYFPAEN-IRERTRELKA 850 (1326)
Q Consensus 793 R~piV~IlGhvdaGKTTLLd~L~~~~------v~~ge~gGITq~---------------iga~~~~~~~-~~~~~~~v~~ 850 (1326)
+-|+.+|.|.-|+||||||++|+... +-.++.|.+..+ -|..++.... +......+..
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~~~~~riaVi~NEfG~v~iD~~ll~~~~~~v~eL~~GCiCCs~~~~l~~~l~~l~~ 82 (318)
T PRK11537 3 PIAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLD 82 (318)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhcccCCcccccccCcCCccccHHHHhCcCceEEEECCCEEEEccCchHHHHHHHHHH
Confidence 45899999999999999999998531 112222221111 1111221110 0000000000
Q ss_pred ccc--cCCCCEEEEeCCCCcchhhhhhhc--------cCccceeEEeeccccCCchhH--HHHHHHHHhcCCcEEEEEec
Q 000728 851 NAT--LKVPGLLVIDTPGHESFTNLRSRG--------SGLCDIAILVVDIMHGLEPQT--IESLNLLKMRNTEFIVALNK 918 (1326)
Q Consensus 851 ~~~--~~~~~I~IIDTPGhe~F~~lr~rg--------~~~aDiaILVVDa~~Gv~~QT--~E~l~~l~~~~vP~IVvINK 918 (1326)
... ...+...||-|.|..+-..+.... .-..+.+|.|||+.+...... .....++... =+|++||
T Consensus 83 ~~~~~~~~~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~~A---D~IvlnK 159 (318)
T PRK11537 83 NLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYA---DRILLTK 159 (318)
T ss_pred HHhccCCCCCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHHhC---CEEEEec
Confidence 000 013678999999987654433221 123588999999987543211 1122333333 4889999
Q ss_pred cccc
Q 000728 919 VDRL 922 (1326)
Q Consensus 919 iD~~ 922 (1326)
+|+.
T Consensus 160 ~Dl~ 163 (318)
T PRK11537 160 TDVA 163 (318)
T ss_pred cccC
Confidence 9987
No 401
>PTZ00121 MAEBL; Provisional
Probab=97.49 E-value=0.00067 Score=87.95 Aligned_cols=22 Identities=32% Similarity=0.237 Sum_probs=14.1
Q ss_pred cccccccCCcccccccCCCCch
Q 000728 26 KKAVVIDDDEYSIGTELTEEPQ 47 (1326)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~ 47 (1326)
|-.-|||+--|+.=|-||-.++
T Consensus 997 KPTCvI~k~N~fsfTALssn~I 1018 (2084)
T PTZ00121 997 KPTCVIDKENHFSFTALTANTI 1018 (2084)
T ss_pred CccceecCcchhhhhhccccch
Confidence 4445777777777777775333
No 402
>COG1161 Predicted GTPases [General function prediction only]
Probab=97.48 E-value=0.00015 Score=85.13 Aligned_cols=57 Identities=26% Similarity=0.439 Sum_probs=44.7
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCcc-cccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCC
Q 000728 792 LRSPICCIMGHVDTGKTKLLDCIRGTNV-QEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH 867 (1326)
Q Consensus 792 ~R~piV~IlGhvdaGKTTLLd~L~~~~v-~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGh 867 (1326)
.+...|.|+|-+++|||||||+|++... ..+..+|+|.++....+. .++.|+||||.
T Consensus 130 ~~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~i~~~-------------------~~i~LlDtPGi 187 (322)
T COG1161 130 KRKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIKLD-------------------DGIYLLDTPGI 187 (322)
T ss_pred ccceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceEEEEcC-------------------CCeEEecCCCc
Confidence 3445699999999999999999998764 567788888776544332 24999999994
No 403
>PRK12288 GTPase RsgA; Reviewed
Probab=97.48 E-value=0.00012 Score=86.77 Aligned_cols=24 Identities=21% Similarity=0.433 Sum_probs=21.3
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCc
Q 000728 795 PICCIMGHVDTGKTKLLDCIRGTN 818 (1326)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~~~ 818 (1326)
.+++|+|++|+|||||||+|++..
T Consensus 206 ki~~~vG~sgVGKSTLiN~Ll~~~ 229 (347)
T PRK12288 206 RISIFVGQSGVGKSSLINALLPEA 229 (347)
T ss_pred CCEEEECCCCCCHHHHHHHhcccc
Confidence 358999999999999999999754
No 404
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.47 E-value=0.00034 Score=83.47 Aligned_cols=102 Identities=25% Similarity=0.277 Sum_probs=65.1
Q ss_pred CcchhhhhhhccCccceeEEeeccccCCchhHHHHHHHHHhcCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHH
Q 000728 867 HESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQN 946 (1326)
Q Consensus 867 he~F~~lr~rg~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~ 946 (1326)
.++|..+...+...++++|+|||+.+....-..+...++ .+.|+|+|+||+|++.. ... ...+.
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~~s~~~~l~~~~--~~~piilV~NK~DLl~k-----~~~-~~~~~-------- 113 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFEGSLIPELKRFV--GGNPVLLVGNKIDLLPK-----SVN-LSKIK-------- 113 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCCCCccHHHHHHh--CCCCEEEEEEchhhCCC-----CCC-HHHHH--------
Confidence 567999988888999999999999764432222222222 26899999999999731 100 00000
Q ss_pred HHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHH
Q 000728 947 EFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1326)
Q Consensus 947 e~~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~ 1002 (1326)
..+...+...|+. ...++++||++|.||.+|+..|..+
T Consensus 114 ------~~l~~~~k~~g~~------------~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 114 ------EWMKKRAKELGLK------------PVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred ------HHHHHHHHHcCCC------------cCcEEEecCCCCCCHHHHHHHHHHH
Confidence 0111223333432 1258899999999999999988643
No 405
>PRK12289 GTPase RsgA; Reviewed
Probab=97.47 E-value=0.00015 Score=86.02 Aligned_cols=26 Identities=23% Similarity=0.390 Sum_probs=22.1
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCc
Q 000728 793 RSPICCIMGHVDTGKTKLLDCIRGTN 818 (1326)
Q Consensus 793 R~piV~IlGhvdaGKTTLLd~L~~~~ 818 (1326)
...+++|+|++|+|||||||+|+...
T Consensus 171 ~~ki~v~iG~SgVGKSSLIN~L~~~~ 196 (352)
T PRK12289 171 RNKITVVAGPSGVGKSSLINRLIPDV 196 (352)
T ss_pred ccceEEEEeCCCCCHHHHHHHHcCcc
Confidence 34468999999999999999999653
No 406
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.44 E-value=0.0003 Score=78.39 Aligned_cols=137 Identities=18% Similarity=0.299 Sum_probs=81.1
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCcccccccC----ceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCc
Q 000728 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAG----GITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHE 868 (1326)
Q Consensus 793 R~piV~IlGhvdaGKTTLLd~L~~~~v~~ge~g----GITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe 868 (1326)
=+.+|..+|.+|.|||||++.|.++++...... ++..+...+.+...+++ -.++|+||-|+-
T Consensus 41 F~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvr--------------lKLtiv~tvGfG 106 (406)
T KOG3859|consen 41 FCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVR--------------LKLTIVDTVGFG 106 (406)
T ss_pred ceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCee--------------EEEEEEeecccc
Confidence 345688899999999999999999887644322 11111111111111111 149999999943
Q ss_pred c-------hh-----------h-----------hhhhccCccceeEEeeccc-cCCchhHHHHHHHHHhcCCcEEEEEec
Q 000728 869 S-------FT-----------N-----------LRSRGSGLCDIAILVVDIM-HGLEPQTIESLNLLKMRNTEFIVALNK 918 (1326)
Q Consensus 869 ~-------F~-----------~-----------lr~rg~~~aDiaILVVDa~-~Gv~~QT~E~l~~l~~~~vP~IVvINK 918 (1326)
+ |. + +....-+..+++++.|..+ ||+....+-.+..|. .++.||-+|-|
T Consensus 107 DQinK~~Syk~iVdyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH~LKslDLvtmk~Ld-skVNIIPvIAK 185 (406)
T KOG3859|consen 107 DQINKEDSYKPIVDYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGHSLKSLDLVTMKKLD-SKVNIIPVIAK 185 (406)
T ss_pred cccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCcchhHHHHHHHHHHh-hhhhhHHHHHH
Confidence 2 11 1 1111234468899999875 565554444444432 35788888999
Q ss_pred cccccCcccCCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCc
Q 000728 919 VDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMN 965 (1326)
Q Consensus 919 iD~~~~w~~~~~a~~~~~L~~q~~~~~~e~~~~l~~I~~~L~e~Gl~ 965 (1326)
.|.+. ..++..--..|+..|..+|+.
T Consensus 186 aDtis---------------------K~eL~~FK~kimsEL~sngv~ 211 (406)
T KOG3859|consen 186 ADTIS---------------------KEELKRFKIKIMSELVSNGVQ 211 (406)
T ss_pred hhhhh---------------------HHHHHHHHHHHHHHHHhcCce
Confidence 99762 223333345677778777753
No 407
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.39 E-value=0.00045 Score=79.93 Aligned_cols=83 Identities=20% Similarity=0.287 Sum_probs=56.3
Q ss_pred cCccceeEEeeccccCC-chhHHH-HHHHHHhcCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHHHHHHHHHHH
Q 000728 878 SGLCDIAILVVDIMHGL-EPQTIE-SLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQI 955 (1326)
Q Consensus 878 ~~~aDiaILVVDa~~Gv-~~QT~E-~l~~l~~~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~e~~~~l~~I 955 (1326)
+..+|++|||+|+..+. .+..++ ++..+...++|+|||+||+|+... .. . ...
T Consensus 76 ~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~~ip~iIVlNK~DL~~~------~~---~----------------~~~ 130 (287)
T cd01854 76 AANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAAGIEPVIVLTKADLLDD------EE---E----------------ELE 130 (287)
T ss_pred EEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEEEHHHCCCh------HH---H----------------HHH
Confidence 67899999999998876 544443 344556678999999999998621 00 0 000
Q ss_pred HHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHH
Q 000728 956 VTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLV 1000 (1326)
Q Consensus 956 ~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~ 1000 (1326)
....... .++++++||.+|.||.+|+..|.
T Consensus 131 ~~~~~~~---------------g~~v~~vSA~~g~gi~~L~~~L~ 160 (287)
T cd01854 131 LVEALAL---------------GYPVLAVSAKTGEGLDELREYLK 160 (287)
T ss_pred HHHHHhC---------------CCeEEEEECCCCccHHHHHhhhc
Confidence 0001111 15899999999999998887664
No 408
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=97.39 E-value=0.00035 Score=72.95 Aligned_cols=55 Identities=18% Similarity=0.389 Sum_probs=36.9
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCccc-ccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCC
Q 000728 794 SPICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH 867 (1326)
Q Consensus 794 ~piV~IlGhvdaGKTTLLd~L~~~~v~-~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGh 867 (1326)
...|+++|.+++|||||+++|++.... .+...|+|.++..+.. ...+.||||||.
T Consensus 101 ~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~~t~~~~~~~~-------------------~~~~~~~DtpGi 156 (156)
T cd01859 101 EGKVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKGEQLVKI-------------------TSKIYLLDTPGV 156 (156)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeeeeeEEEEc-------------------CCCEEEEECcCC
Confidence 345899999999999999999965432 2334454443321111 125999999994
No 409
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=97.37 E-value=0.0011 Score=70.69 Aligned_cols=66 Identities=20% Similarity=0.112 Sum_probs=51.6
Q ss_pred CCCCEEEEeCCCCcchhhhhhhccCccceeEEeeccccCCchhHHHHHHHHHhcCCcEEEEEeccccc
Q 000728 855 KVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRL 922 (1326)
Q Consensus 855 ~~~~I~IIDTPGhe~F~~lr~rg~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~vP~IVvINKiD~~ 922 (1326)
..+.+.|||||+.... .....+..+|.+|+|+.....-...+...+.++...++|+.+++|++|..
T Consensus 91 ~~~d~viiDtpp~~~~--~~~~~l~~aD~vliv~~~~~~~~~~~~~~~~~l~~~~~~~~vV~N~~~~~ 156 (179)
T cd03110 91 EGAELIIIDGPPGIGC--PVIASLTGADAALLVTEPTPSGLHDLERAVELVRHFGIPVGVVINKYDLN 156 (179)
T ss_pred cCCCEEEEECcCCCcH--HHHHHHHcCCEEEEEecCCcccHHHHHHHHHHHHHcCCCEEEEEeCCCCC
Confidence 4578999999976433 33445678999999999886555566777788888889999999999964
No 410
>cd04089 eRF3_II eRF3_II: domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM is a non-pathogenic prion-li
Probab=97.35 E-value=0.00082 Score=63.19 Aligned_cols=78 Identities=17% Similarity=0.339 Sum_probs=56.1
Q ss_pred ccceeEEEEEEEeCceeEEEEEEEeeEecCCCEEEEccCCCceeeeeeeccCCCCCceeeecceeecccccccc---cce
Q 000728 1016 ELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAA---QGI 1092 (1326)
Q Consensus 1016 ~~~~~VlEvk~~~G~Gtvi~giV~~G~Lr~GD~IVl~g~~g~~~~~IR~Ll~p~p~~e~rVk~~~~~~k~v~aa---~gv 1092 (1326)
||+++|..+|.. .|+++.|.|.+|+|++||.|++++++ . ...|+++++|+..+..| ..+
T Consensus 1 plr~~I~~v~~~--~g~vv~G~v~~G~i~~G~~v~i~P~~--~--------------~~~V~si~~~~~~~~~a~aGd~v 62 (82)
T cd04089 1 PLRLPIIDKYKD--MGTVVLGKVESGTIKKGDKLLVMPNK--T--------------QVEVLSIYNEDVEVRYARPGENV 62 (82)
T ss_pred CeEEEEEeEEEc--CCEEEEEEEeeeEEecCCEEEEeCCC--c--------------EEEEEEEEECCEECCEECCCCEE
Confidence 477889998865 38999999999999999999987653 1 24566667776665544 347
Q ss_pred eeeccccccccCCCceEEc
Q 000728 1093 KITAQGLEHAIAGTGLYVV 1111 (1326)
Q Consensus 1093 ~i~~~gl~~~~aG~~~~v~ 1111 (1326)
.|.+.+++......+++++
T Consensus 63 ~l~l~~i~~~~v~~G~vl~ 81 (82)
T cd04089 63 RLRLKGIEEEDISPGFVLC 81 (82)
T ss_pred EEEecCCCHHHCCCCCEEe
Confidence 7777777665455555543
No 411
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.33 E-value=0.00094 Score=73.38 Aligned_cols=113 Identities=20% Similarity=0.207 Sum_probs=70.6
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchhh--
Q 000728 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN-- 872 (1326)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~~-- 872 (1326)
|.|.+||+--+||||+-....+..-+ .+ |.-+ -.+..+.... + ....-.+.+||.||+.+|..
T Consensus 28 p~ilLMG~rRsGKsSI~KVVFhkMsP-ne----Tlfl----ESTski~~d~--i----s~sfinf~v~dfPGQ~~~Fd~s 92 (347)
T KOG3887|consen 28 PRILLMGLRRSGKSSIQKVVFHKMSP-NE----TLFL----ESTSKITRDH--I----SNSFINFQVWDFPGQMDFFDPS 92 (347)
T ss_pred ceEEEEeecccCcchhhheeeeccCC-Cc----eeEe----eccCcccHhh--h----hhhhcceEEeecCCccccCCCc
Confidence 45999999999999988776544322 11 1000 0011100000 0 00112489999999888743
Q ss_pred -hhhhccCccceeEEeeccccCCc-hhHHHHHHHHHhc----CCcEEEEEeccccc
Q 000728 873 -LRSRGSGLCDIAILVVDIMHGLE-PQTIESLNLLKMR----NTEFIVALNKVDRL 922 (1326)
Q Consensus 873 -lr~rg~~~aDiaILVVDa~~Gv~-~QT~E~l~~l~~~----~vP~IVvINKiD~~ 922 (1326)
-..+.++.|-..|+|||+.+..+ +-+.-++-..+.. ++.|=|+|.|+|-+
T Consensus 93 ~D~e~iF~~~gALifvIDaQddy~eala~L~~~v~raykvNp~in~EVfiHKvDGL 148 (347)
T KOG3887|consen 93 FDYEMIFRGVGALIFVIDAQDDYMEALARLHMTVERAYKVNPNINFEVFIHKVDGL 148 (347)
T ss_pred cCHHHHHhccCeEEEEEechHHHHHHHHHHHHHhhheeecCCCceEEEEEEeccCC
Confidence 23456788999999999976543 4555555555555 45688999999976
No 412
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=97.32 E-value=0.0028 Score=75.96 Aligned_cols=64 Identities=17% Similarity=0.226 Sum_probs=44.5
Q ss_pred CCEEEEeCCCCcc-------------hhhhhhhccCccceeEEeeccccCCc----hhHHHHHHHHHhcCCcEEEEEecc
Q 000728 857 PGLLVIDTPGHES-------------FTNLRSRGSGLCDIAILVVDIMHGLE----PQTIESLNLLKMRNTEFIVALNKV 919 (1326)
Q Consensus 857 ~~I~IIDTPGhe~-------------F~~lr~rg~~~aDiaILVVDa~~Gv~----~QT~E~l~~l~~~~vP~IVvINKi 919 (1326)
+.+.++|.||..+ ...|...++..++.+||||- +|.- .........+.-.+...|+|++|+
T Consensus 412 qRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQ--DGSVDAERSnVTDLVsq~DP~GrRTIfVLTKV 489 (980)
T KOG0447|consen 412 QRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQ--DGSVDAERSIVTDLVSQMDPHGRRTIFVLTKV 489 (980)
T ss_pred ceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEec--cCCcchhhhhHHHHHHhcCCCCCeeEEEEeec
Confidence 3588999999432 35566678999999999983 2211 112233445556678899999999
Q ss_pred ccc
Q 000728 920 DRL 922 (1326)
Q Consensus 920 D~~ 922 (1326)
|+.
T Consensus 490 DlA 492 (980)
T KOG0447|consen 490 DLA 492 (980)
T ss_pred chh
Confidence 986
No 413
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=97.32 E-value=0.00075 Score=79.99 Aligned_cols=135 Identities=15% Similarity=0.103 Sum_probs=80.0
Q ss_pred CCCEEEEeCCCCcchhhhhhhccCccceeEEeeccccC-----------CchhHHHHHHHHHh----cCCcEEEEEeccc
Q 000728 856 VPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHG-----------LEPQTIESLNLLKM----RNTEFIVALNKVD 920 (1326)
Q Consensus 856 ~~~I~IIDTPGhe~F~~lr~rg~~~aDiaILVVDa~~G-----------v~~QT~E~l~~l~~----~~vP~IVvINKiD 920 (1326)
...+.|||++|+..++..|..++..++++|+|||.++- ....++..+..+.. .++|+||++||+|
T Consensus 183 ~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D 262 (342)
T smart00275 183 KLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKID 262 (342)
T ss_pred CeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecHH
Confidence 34589999999999999999999999999999999852 23344444444443 3689999999999
Q ss_pred cccCcccCCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHH
Q 000728 921 RLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLV 1000 (1326)
Q Consensus 921 ~~~~w~~~~~a~~~~~L~~q~~~~~~e~~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~ 1000 (1326)
+... .....++..-+....-. ..+.....-|...+....-+ ..+..+-+..|+|..-.+|..+|+.+.
T Consensus 263 ~~~~--Kl~~~~l~~~fp~y~g~--~~~~~~~~yi~~~F~~~~~~--------~~~r~~y~h~t~a~Dt~~~~~v~~~v~ 330 (342)
T smart00275 263 LFEE--KIKKVPLVDYFPDYKGP--NDYEAAAKFIKQKFLRLNRN--------SSRKSIYHHFTCATDTRNIRVVFDAVK 330 (342)
T ss_pred hHHH--HhCCCchhccCCCCCCC--CCHHHHHHHHHHHHHHhccC--------CCCceEEEEEeeecccHHHHHHHHHHH
Confidence 7521 00000111000000000 01112222333333322100 022456777899998888888887765
Q ss_pred HH
Q 000728 1001 QW 1002 (1326)
Q Consensus 1001 ~~ 1002 (1326)
..
T Consensus 331 ~~ 332 (342)
T smart00275 331 DI 332 (342)
T ss_pred HH
Confidence 43
No 414
>cd03696 selB_II selB_II: this subfamily represents the domain of elongation factor SelB, homologous to domain II of EF-Tu. SelB may function by replacing EF-Tu. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3' or 5' non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation.
Probab=97.28 E-value=0.0012 Score=62.13 Aligned_cols=69 Identities=20% Similarity=0.414 Sum_probs=52.6
Q ss_pred cceeEEEEEEEeCceeEEEEEEEeeEecCCCEEEEccCCCceeeeeeeccCCCCCceeeecceeecccccccc---ccee
Q 000728 1017 LQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAA---QGIK 1093 (1326)
Q Consensus 1017 ~~~~VlEvk~~~G~Gtvi~giV~~G~Lr~GD~IVl~g~~g~~~~~IR~Ll~p~p~~e~rVk~~~~~~k~v~aa---~gv~ 1093 (1326)
|+++|..+|.+.|.|+++.|.|.+|+|++|+.+++.++. .. ..|+++++++..+..| ..+.
T Consensus 1 lr~~i~~~~~~~~~g~vv~G~v~sG~i~~g~~v~~~p~~--~~--------------~~V~sI~~~~~~~~~a~aGd~v~ 64 (83)
T cd03696 1 FRLPIDRVFTVKGQGTVVTGTVLSGSVKVGDKVEILPLG--EE--------------TRVRSIQVHGKDVEEAKAGDRVA 64 (83)
T ss_pred CEEEEEEEEEcCCcEEEEEEEEeecEEeCCCEEEECCCC--ce--------------EEEEEEEECCcCcCEEcCCCEEE
Confidence 568899999999999999999999999999999887643 22 4456666666665543 4477
Q ss_pred eecccccc
Q 000728 1094 ITAQGLEH 1101 (1326)
Q Consensus 1094 i~~~gl~~ 1101 (1326)
|.+.++..
T Consensus 65 i~l~~~~~ 72 (83)
T cd03696 65 LNLTGVDA 72 (83)
T ss_pred EEEcCCCH
Confidence 77777654
No 415
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=97.27 E-value=0.00055 Score=78.77 Aligned_cols=99 Identities=14% Similarity=0.046 Sum_probs=65.2
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchh-hhhhhccccccCCCCEEEEeCCCCcc---
Q 000728 794 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRE-RTRELKANATLKVPGLLVIDTPGHES--- 869 (1326)
Q Consensus 794 ~piV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~-~~~~v~~~~~~~~~~I~IIDTPGhe~--- 869 (1326)
++.|+|+|.+++|||||++.|+..+...+.++..|++.....+.....+- ....+......-.-.|+|+|+.|...
T Consensus 20 ~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGAs 99 (391)
T KOG1491|consen 20 NLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKGAS 99 (391)
T ss_pred cceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccCcc
Confidence 45799999999999999999999888877777777765444333322110 00000000000112499999999432
Q ss_pred ----hhhhhhhccCccceeEEeecccc
Q 000728 870 ----FTNLRSRGSGLCDIAILVVDIMH 892 (1326)
Q Consensus 870 ----F~~lr~rg~~~aDiaILVVDa~~ 892 (1326)
..|-....++.||+++-||++..
T Consensus 100 ~G~GLGN~FLs~iR~vDaifhVVr~f~ 126 (391)
T KOG1491|consen 100 AGEGLGNKFLSHIRHVDAIFHVVRAFE 126 (391)
T ss_pred cCcCchHHHHHhhhhccceeEEEEecC
Confidence 45556667888999999999854
No 416
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.25 E-value=0.0014 Score=78.05 Aligned_cols=126 Identities=18% Similarity=0.230 Sum_probs=63.9
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCcc---cccccCceeee---eeeeE----------eccccchhhhhhhccccccCCC
Q 000728 794 SPICCIMGHVDTGKTKLLDCIRGTNV---QEGEAGGITQQ---IGATY----------FPAENIRERTRELKANATLKVP 857 (1326)
Q Consensus 794 ~piV~IlGhvdaGKTTLLd~L~~~~v---~~ge~gGITq~---iga~~----------~~~~~~~~~~~~v~~~~~~~~~ 857 (1326)
..+|++||++|+||||.|-.|...-+ .....+-||.+ ||+.. +|.........-...-..+...
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~ 282 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC 282 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence 55799999999999999988854322 11112223332 22210 0000000000000000124456
Q ss_pred CEEEEeCCCCcchhhhhh----hccC--ccceeEEeeccccCCchhH-HHHHHHHHhcCCcEEEEEeccccc
Q 000728 858 GLLVIDTPGHESFTNLRS----RGSG--LCDIAILVVDIMHGLEPQT-IESLNLLKMRNTEFIVALNKVDRL 922 (1326)
Q Consensus 858 ~I~IIDTPGhe~F~~lr~----rg~~--~aDiaILVVDa~~Gv~~QT-~E~l~~l~~~~vP~IVvINKiD~~ 922 (1326)
.+.||||.|+..+..+.. .++. ...-+.||++++. ...+ .+.+......++- =|++||+|-.
T Consensus 283 d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~--K~~dlkei~~~f~~~~i~-~~I~TKlDET 351 (407)
T COG1419 283 DVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATT--KYEDLKEIIKQFSLFPID-GLIFTKLDET 351 (407)
T ss_pred CEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCc--chHHHHHHHHHhccCCcc-eeEEEccccc
Confidence 899999999766533322 1222 2345667787754 2222 3344444444433 3457999975
No 417
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=97.24 E-value=0.0002 Score=85.98 Aligned_cols=69 Identities=20% Similarity=0.377 Sum_probs=52.4
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCc-ccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCC--cchh
Q 000728 795 PICCIMGHVDTGKTKLLDCIRGTN-VQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH--ESFT 871 (1326)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~~~-v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGh--e~F~ 871 (1326)
.+|++||.+|+||||+||+|.+.. |..+.++|-|.|+.+.++. +.+.+.||||. .+|.
T Consensus 315 vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~ls-------------------~~v~LCDCPGLVfPSf~ 375 (562)
T KOG1424|consen 315 VTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIFLS-------------------PSVCLCDCPGLVFPSFS 375 (562)
T ss_pred eEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEEcC-------------------CCceecCCCCccccCCC
Confidence 569999999999999999999875 5677889999988776664 45999999994 4454
Q ss_pred hhhhhccCcccee
Q 000728 872 NLRSRGSGLCDIA 884 (1326)
Q Consensus 872 ~lr~rg~~~aDia 884 (1326)
.. ++...|+++
T Consensus 376 ~~--r~emvl~Gi 386 (562)
T KOG1424|consen 376 PT--RAEMVLNGI 386 (562)
T ss_pred ch--HHHHHHhcC
Confidence 32 333445553
No 418
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=97.24 E-value=0.0004 Score=78.57 Aligned_cols=26 Identities=19% Similarity=0.436 Sum_probs=22.4
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCc
Q 000728 793 RSPICCIMGHVDTGKTKLLDCIRGTN 818 (1326)
Q Consensus 793 R~piV~IlGhvdaGKTTLLd~L~~~~ 818 (1326)
...+++|+|++|+|||||||+|++..
T Consensus 119 ~~~~~~~~G~sgvGKStLiN~L~~~~ 144 (245)
T TIGR00157 119 QNRISVFAGQSGVGKSSLINALDPSV 144 (245)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhhhh
Confidence 34579999999999999999998653
No 419
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=97.23 E-value=0.00099 Score=72.11 Aligned_cols=66 Identities=18% Similarity=0.212 Sum_probs=38.5
Q ss_pred CEEEEeCCCCcch-h-----hhhhhccCccc---eeEEeeccccCC-----chhHHHHHHHHHhcCCcEEEEEecccccc
Q 000728 858 GLLVIDTPGHESF-T-----NLRSRGSGLCD---IAILVVDIMHGL-----EPQTIESLNLLKMRNTEFIVALNKVDRLY 923 (1326)
Q Consensus 858 ~I~IIDTPGhe~F-~-----~lr~rg~~~aD---iaILVVDa~~Gv-----~~QT~E~l~~l~~~~vP~IVvINKiD~~~ 923 (1326)
.++|+|+||+-.. + ....+.+...+ .+|+++|+.--+ -......+..+....+|.|=+++|||++.
T Consensus 99 dylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAMi~lE~P~INvlsKMDLlk 178 (273)
T KOG1534|consen 99 DYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSAMISLEVPHINVLSKMDLLK 178 (273)
T ss_pred CEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHHHHHhcCcchhhhhHHHHhh
Confidence 5999999995432 2 12222222211 256666653211 12223344555667899999999999984
No 420
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.21 E-value=0.0004 Score=79.74 Aligned_cols=27 Identities=22% Similarity=0.445 Sum_probs=23.4
Q ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHcC
Q 000728 791 NLRSPICCIMGHVDTGKTKLLDCIRGT 817 (1326)
Q Consensus 791 ~~R~piV~IlGhvdaGKTTLLd~L~~~ 817 (1326)
.+..-+.+|+|+.|+|||||||+|...
T Consensus 161 ~l~~~~svl~GqSGVGKSSLiN~L~p~ 187 (301)
T COG1162 161 LLAGKITVLLGQSGVGKSTLINALLPE 187 (301)
T ss_pred HhcCCeEEEECCCCCcHHHHHHhhCch
Confidence 456668999999999999999999863
No 421
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=97.13 E-value=0.00089 Score=66.03 Aligned_cols=87 Identities=9% Similarity=-0.009 Sum_probs=51.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchhhhhh
Q 000728 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1326)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~~lr~ 875 (1326)
.|+++|+.|+|||+|+.++....+... ..+ .++| |..+..
T Consensus 2 kvv~~G~~gvGKt~l~~~~~~~~~~~~--~~~-~t~~-------------------------------------~~~~~~ 41 (124)
T smart00010 2 KVVGIGDSGVGKVGKSARFVQFPFDYV--PTV-FTIG-------------------------------------IDVYDP 41 (124)
T ss_pred EEEEECCCChhHHHHHHHHhcCCcccc--Cce-ehhh-------------------------------------hhhccc
Confidence 589999999999999999965443211 000 1111 333344
Q ss_pred hccCccceeEEeeccccCCchh--HHHHHHHHHhcCCcEEEEEeccccc
Q 000728 876 RGSGLCDIAILVVDIMHGLEPQ--TIESLNLLKMRNTEFIVALNKVDRL 922 (1326)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~Q--T~E~l~~l~~~~vP~IVvINKiD~~ 922 (1326)
...+.++.+++|++........ +...+.......+|++++.||+|+.
T Consensus 42 ~~~~s~~~~~~v~~~~~~~s~~~~~~~~i~~~~k~dl~~~~~~nk~dl~ 90 (124)
T smart00010 42 TSYESFDVVLQCWRVDDRDSADNKNVPEVLVGNKSDLPILVGGNRDVLE 90 (124)
T ss_pred cccCCCCEEEEEEEccCHHHHHHHhHHHHHhcCCCCCcEEEEeechhhH
Confidence 4566778888877766522211 1112222122347889999999973
No 422
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.13 E-value=0.0006 Score=78.91 Aligned_cols=28 Identities=18% Similarity=0.374 Sum_probs=23.6
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCcc
Q 000728 792 LRSPICCIMGHVDTGKTKLLDCIRGTNV 819 (1326)
Q Consensus 792 ~R~piV~IlGhvdaGKTTLLd~L~~~~v 819 (1326)
+++.+++|+|++|+|||||++.|++...
T Consensus 159 L~~k~~~~~G~sg~GKSTlin~l~~~~~ 186 (287)
T cd01854 159 LKGKTSVLVGQSGVGKSTLINALLPDLD 186 (287)
T ss_pred hccceEEEECCCCCCHHHHHHHHhchhh
Confidence 3446799999999999999999987543
No 423
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.13 E-value=0.0023 Score=65.96 Aligned_cols=63 Identities=17% Similarity=0.035 Sum_probs=44.8
Q ss_pred CCEEEEeCCCCcchhhhhhhccCccceeEEeeccccCCchhHHHHHHHHHhc--CCcEEEEEecccc
Q 000728 857 PGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMR--NTEFIVALNKVDR 921 (1326)
Q Consensus 857 ~~I~IIDTPGhe~F~~lr~rg~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~--~vP~IVvINKiD~ 921 (1326)
+.+.|||||++... .....+..||.+|+|++.+-.-...+...+..+... ..++.+++|+++.
T Consensus 45 yd~VIiD~p~~~~~--~~~~~l~~aD~vviv~~~~~~s~~~~~~~l~~l~~~~~~~~~~lVvN~~~~ 109 (139)
T cd02038 45 YDYIIIDTGAGISD--NVLDFFLAADEVIVVTTPEPTSITDAYALIKKLAKQLRVLNFRVVVNRAES 109 (139)
T ss_pred CCEEEEECCCCCCH--HHHHHHHhCCeEEEEcCCChhHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 56999999986433 334568889999999998754444455555555432 4578899999975
No 424
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.12 E-value=0.00037 Score=81.58 Aligned_cols=51 Identities=20% Similarity=0.249 Sum_probs=27.5
Q ss_pred CCCEEEEeCCC-Ccchhhh--hhhccCccceeEEeeccccCCchhHHHHHHHHH
Q 000728 856 VPGLLVIDTPG-HESFTNL--RSRGSGLCDIAILVVDIMHGLEPQTIESLNLLK 906 (1326)
Q Consensus 856 ~~~I~IIDTPG-he~F~~l--r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~~l~ 906 (1326)
.|.++.+|-|- |.++... ...|+...--.+|+|+-+.|+....+.-|-+|.
T Consensus 430 EPTLLMLDEPTNHLDLNAVIWLdNYLQgWkKTLLIVSHDQgFLD~VCtdIIHLD 483 (807)
T KOG0066|consen 430 EPTLLMLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQGFLDSVCTDIIHLD 483 (807)
T ss_pred CceeeeecCCccccccceeeehhhHHhhhhheeEEEecccchHHHHHHHHhhhh
Confidence 35677888885 5554321 123444455556777766665544444444443
No 425
>PRK00098 GTPase RsgA; Reviewed
Probab=97.10 E-value=0.00069 Score=78.84 Aligned_cols=27 Identities=22% Similarity=0.427 Sum_probs=23.2
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCc
Q 000728 792 LRSPICCIMGHVDTGKTKLLDCIRGTN 818 (1326)
Q Consensus 792 ~R~piV~IlGhvdaGKTTLLd~L~~~~ 818 (1326)
++..+++|+|++|+|||||+++|++..
T Consensus 162 l~gk~~~~~G~sgvGKStlin~l~~~~ 188 (298)
T PRK00098 162 LAGKVTVLAGQSGVGKSTLLNALAPDL 188 (298)
T ss_pred ccCceEEEECCCCCCHHHHHHHHhCCc
Confidence 345579999999999999999998654
No 426
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.07 E-value=0.0025 Score=84.70 Aligned_cols=118 Identities=21% Similarity=0.218 Sum_probs=67.8
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCcccccccCcee--eeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCC---
Q 000728 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGIT--QQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPG--- 866 (1326)
Q Consensus 792 ~R~piV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGIT--q~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPG--- 866 (1326)
..-|--.|||++|+||||+|...- -++...+..+-. ..+|+.+|.+ |-...-.+|||.|
T Consensus 123 yeLPWy~viG~pgsGKTtal~~sg-l~Fpl~~~~~~~~~~~~gT~~cdw---------------wf~deaVlIDtaGry~ 186 (1188)
T COG3523 123 YELPWYMVIGPPGSGKTTALLNSG-LQFPLAEQMGALGLAGPGTRNCDW---------------WFTDEAVLIDTAGRYI 186 (1188)
T ss_pred hcCCceEEecCCCCCcchHHhccc-ccCcchhhhccccccCCCCcccCc---------------ccccceEEEcCCccee
Confidence 345678999999999999986542 122211111111 1111111111 2223588999999
Q ss_pred -Cc--c---------hhhh--hhhccCccceeEEeeccccCCchh--HH-HHHHHHH----------hcCCcEEEEEecc
Q 000728 867 -HE--S---------FTNL--RSRGSGLCDIAILVVDIMHGLEPQ--TI-ESLNLLK----------MRNTEFIVALNKV 919 (1326)
Q Consensus 867 -he--~---------F~~l--r~rg~~~aDiaILVVDa~~Gv~~Q--T~-E~l~~l~----------~~~vP~IVvINKi 919 (1326)
|. . |..+ ..|..+..|+|||.+|+.+-.+.. .. .+...|+ ....|+.|++||+
T Consensus 187 ~q~s~~~~~~~~W~~fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~ 266 (1188)
T COG3523 187 TQDSADEVDRAEWLGFLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKA 266 (1188)
T ss_pred cccCcchhhHHHHHHHHHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEecc
Confidence 32 1 2111 235667799999999998754322 22 1222222 2367999999999
Q ss_pred ccccCc
Q 000728 920 DRLYGW 925 (1326)
Q Consensus 920 D~~~~w 925 (1326)
|++++|
T Consensus 267 Dll~GF 272 (1188)
T COG3523 267 DLLPGF 272 (1188)
T ss_pred cccccH
Confidence 998763
No 427
>PRK13796 GTPase YqeH; Provisional
Probab=97.07 E-value=0.00065 Score=81.24 Aligned_cols=55 Identities=22% Similarity=0.290 Sum_probs=37.8
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCc------ccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCc
Q 000728 795 PICCIMGHVDTGKTKLLDCIRGTN------VQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHE 868 (1326)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~~~------v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe 868 (1326)
..|.|+|.+|+|||||+|+|+... +..+..+|+|.++-.+.+ . .+..|+||||..
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l--~-----------------~~~~l~DTPGi~ 221 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPL--D-----------------DGSFLYDTPGII 221 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEc--C-----------------CCcEEEECCCcc
Confidence 359999999999999999998542 223455666655432221 1 246899999964
No 428
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=97.03 E-value=0.0012 Score=75.43 Aligned_cols=57 Identities=25% Similarity=0.481 Sum_probs=42.4
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCc------ccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCC
Q 000728 795 PICCIMGHVDTGKTKLLDCIRGTN------VQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH 867 (1326)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~~~------v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGh 867 (1326)
+.|.|+|-+|+|||||+|+++... +..|..+|+|+.++..+.-. ..+.+.+|||||.
T Consensus 144 ~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~----------------~rp~vy~iDTPGi 206 (335)
T KOG2485|consen 144 YNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRIS----------------HRPPVYLIDTPGI 206 (335)
T ss_pred eeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEec----------------cCCceEEecCCCc
Confidence 469999999999999999997533 34566788888876532211 1256999999994
No 429
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=97.01 E-value=0.0011 Score=77.82 Aligned_cols=70 Identities=20% Similarity=0.147 Sum_probs=53.4
Q ss_pred ccCCCCEEEEeCCCCcchhhhhhhccCccceeEEeeccccC-----------CchhHHHHHHHHHhc----CCcEEEEEe
Q 000728 853 TLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHG-----------LEPQTIESLNLLKMR----NTEFIVALN 917 (1326)
Q Consensus 853 ~~~~~~I~IIDTPGhe~F~~lr~rg~~~aDiaILVVDa~~G-----------v~~QT~E~l~~l~~~----~vP~IVvIN 917 (1326)
.++...+.++|++||.+-+.-|...+-.++++|+||+.+.= .+..++..+..+... +++||+++|
T Consensus 191 ~~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiLFLN 270 (354)
T KOG0082|consen 191 TIKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIILFLN 270 (354)
T ss_pred EeCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEEEee
Confidence 44556799999999999999999999999999999998641 122333344434332 689999999
Q ss_pred ccccc
Q 000728 918 KVDRL 922 (1326)
Q Consensus 918 KiD~~ 922 (1326)
|+|+.
T Consensus 271 K~DLF 275 (354)
T KOG0082|consen 271 KKDLF 275 (354)
T ss_pred cHHHH
Confidence 99984
No 430
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=97.01 E-value=0.0019 Score=68.39 Aligned_cols=63 Identities=19% Similarity=0.091 Sum_probs=46.3
Q ss_pred CEEEEeCCCCcchhhhhhhccCccceeEEeeccccCCchhHHHHHHHHHhcCCc-EEEEEeccccc
Q 000728 858 GLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTE-FIVALNKVDRL 922 (1326)
Q Consensus 858 ~I~IIDTPGhe~F~~lr~rg~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~vP-~IVvINKiD~~ 922 (1326)
.+.|||||+..... ....+..+|.+|+|++..-.-...+...+..+...+.+ +.|++|+++..
T Consensus 64 d~viiD~p~~~~~~--~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~iv~N~~~~~ 127 (179)
T cd02036 64 DYILIDSPAGIERG--FITAIAPADEALLVTTPEISSLRDADRVKGLLEALGIKVVGVIVNRVRPD 127 (179)
T ss_pred CEEEEECCCCCcHH--HHHHHHhCCcEEEEeCCCcchHHHHHHHHHHHHHcCCceEEEEEeCCccc
Confidence 69999999865443 33456889999999988765555555666666666654 67899999863
No 431
>cd03695 CysN_NodQ_II CysN_NodQ_II: This subfamily represents the domain II of the large subunit of ATP sulfurylase (ATPS): CysN or the N-terminal portion of NodQ, found mainly in proteobacteria and homologous to the domain II of EF-Tu. Escherichia coli ATPS consists of CysN and a smaller subunit CysD and CysN. ATPS produces adenosine-5'-phosphosulfate (APS) from ATP and sulfate, coupled with GTP hydrolysis. In the subsequent reaction APS is phosphorylated by an APS kinase (CysC), to produce 3'-phosphoadenosine-5'-phosphosulfate (PAPS) for use in amino acid (aa) biosynthesis. The Rhizobiaceae group (alpha-proteobacteria) appears to carry out the same chemistry for the sufation of a nodulation factor. In Rhizobium meliloti, a the hererodimeric complex comprised of NodP and NodQ appears to possess both ATPS and APS kinase activities. The N and C termini of NodQ correspond to CysN and CysC, respectively. Other eubacteria, Archaea, and eukaryotes use a different ATP sulfurylase, which sho
Probab=96.89 E-value=0.0044 Score=58.28 Aligned_cols=66 Identities=18% Similarity=0.179 Sum_probs=49.7
Q ss_pred cceeEEEEEEEeCceeEEEEEEEeeEecCCCEEEEccCCCceeeeeeeccCCCCCceeeecceeeccccccccc---cee
Q 000728 1017 LQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAAQ---GIK 1093 (1326)
Q Consensus 1017 ~~~~VlEvk~~~G~Gtvi~giV~~G~Lr~GD~IVl~g~~g~~~~~IR~Ll~p~p~~e~rVk~~~~~~k~v~aa~---gv~ 1093 (1326)
|+++|.++|.+.+.|+.++|.|.+|.|+.||.+.+++.+ . ...|+++++|+..+..|. .+.
T Consensus 1 lr~~V~dv~k~~~~~~~v~Gkv~~G~v~~Gd~v~~~P~~--~--------------~~~V~si~~~~~~~~~a~aGd~v~ 64 (81)
T cd03695 1 FRFPVQYVIRPNADFRGYAGTIASGSIRVGDEVVVLPSG--K--------------TSRVKSIETFDGELDEAGAGESVT 64 (81)
T ss_pred CEeeEEEEEeeCCCcEEEEEEEccceEECCCEEEEcCCC--C--------------eEEEEEEEECCcEeCEEcCCCEEE
Confidence 578899999888888889999999999999999987653 1 245667777777766553 255
Q ss_pred eeccc
Q 000728 1094 ITAQG 1098 (1326)
Q Consensus 1094 i~~~g 1098 (1326)
|.+.+
T Consensus 65 l~l~~ 69 (81)
T cd03695 65 LTLED 69 (81)
T ss_pred EEECC
Confidence 55543
No 432
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=96.84 E-value=0.0053 Score=65.14 Aligned_cols=68 Identities=21% Similarity=0.109 Sum_probs=49.3
Q ss_pred CCCCEEEEeCCCCcchhhhhhhccCccceeEEeeccccCCchhHHHHHHHHHhcCCcEE-EEEeccccc
Q 000728 855 KVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFI-VALNKVDRL 922 (1326)
Q Consensus 855 ~~~~I~IIDTPGhe~F~~lr~rg~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~vP~I-VvINKiD~~ 922 (1326)
..+.+.|||||+...-.......+..+|.+|+|+.....-...+...+..+...+++++ +++|+++..
T Consensus 66 ~~yD~VIiD~pp~~~~~~~~~~~~~~ad~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvv~N~~~~~ 134 (169)
T cd02037 66 GELDYLVIDMPPGTGDEHLTLAQSLPIDGAVIVTTPQEVALDDVRKAIDMFKKVNIPILGVVENMSYFV 134 (169)
T ss_pred CCCCEEEEeCCCCCcHHHHHHHhccCCCeEEEEECCchhhHHHHHHHHHHHHhcCCCeEEEEEcCCccc
Confidence 35679999999974322221111367899999998876556677888888888888764 789999853
No 433
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.82 E-value=0.0027 Score=75.75 Aligned_cols=126 Identities=21% Similarity=0.226 Sum_probs=67.9
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcC----c-----cc--cccc------CceeeeeeeeEeccccchhhhhhhccc---c
Q 000728 793 RSPICCIMGHVDTGKTKLLDCIRGT----N-----VQ--EGEA------GGITQQIGATYFPAENIRERTRELKAN---A 852 (1326)
Q Consensus 793 R~piV~IlGhvdaGKTTLLd~L~~~----~-----v~--~ge~------gGITq~iga~~~~~~~~~~~~~~v~~~---~ 852 (1326)
++-+|.++|..|+||||.+..|... + |. ..+. ..+..+++..+|+......-....... .
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~~a 178 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALEKA 178 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHHHH
Confidence 4557899999999999998877421 1 00 0111 112345555555542211111111111 1
Q ss_pred ccCCCCEEEEeCCCCcch-----hhhh-hhccCccceeEEeeccccCCchhHHHHHHHHHhcCCcE-EEEEecccc
Q 000728 853 TLKVPGLLVIDTPGHESF-----TNLR-SRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEF-IVALNKVDR 921 (1326)
Q Consensus 853 ~~~~~~I~IIDTPGhe~F-----~~lr-~rg~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~vP~-IVvINKiD~ 921 (1326)
....+.+.||||.|-... ..+. ......+|-+|||||++.|- ............+++ =|+|||+|-
T Consensus 179 k~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQ---dA~~~A~aF~e~l~itGvIlTKlDG 251 (451)
T COG0541 179 KEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQ---DAVNTAKAFNEALGITGVILTKLDG 251 (451)
T ss_pred HHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccch---HHHHHHHHHhhhcCCceEEEEcccC
Confidence 123457999999993322 1111 23455689999999998863 222211112223443 367899995
No 434
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=96.82 E-value=0.0026 Score=70.47 Aligned_cols=62 Identities=27% Similarity=0.254 Sum_probs=44.4
Q ss_pred CCEEEEeCC-CCcchhhhhhhccCccceeEEeeccccCCchhHHHHHHHHHhcC-CcEEEEEecccc
Q 000728 857 PGLLVIDTP-GHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRN-TEFIVALNKVDR 921 (1326)
Q Consensus 857 ~~I~IIDTP-Ghe~F~~lr~rg~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~-vP~IVvINKiD~ 921 (1326)
+.+.|+||- |.+.|..- ....||++|+|+|.+..-......+-.+....+ .+|.||+||+|-
T Consensus 134 ~e~VivDtEAGiEHfgRg---~~~~vD~vivVvDpS~~sl~taeri~~L~~elg~k~i~~V~NKv~e 197 (255)
T COG3640 134 YEVVIVDTEAGIEHFGRG---TIEGVDLVIVVVDPSYKSLRTAERIKELAEELGIKRIFVVLNKVDE 197 (255)
T ss_pred CcEEEEecccchhhhccc---cccCCCEEEEEeCCcHHHHHHHHHHHHHHHHhCCceEEEEEeeccc
Confidence 568899984 66667633 346799999999987533333333445566778 789999999995
No 435
>PRK13695 putative NTPase; Provisional
Probab=96.74 E-value=0.0036 Score=66.85 Aligned_cols=43 Identities=16% Similarity=0.298 Sum_probs=33.0
Q ss_pred hccCccceeEEeec---cccCCchhHHHHHHHHHhcCCcEEEEEeccc
Q 000728 876 RGSGLCDIAILVVD---IMHGLEPQTIESLNLLKMRNTEFIVALNKVD 920 (1326)
Q Consensus 876 rg~~~aDiaILVVD---a~~Gv~~QT~E~l~~l~~~~vP~IVvINKiD 920 (1326)
..+..+++ ||+| ..+...++..+.+..+...+.|+|+++|+..
T Consensus 92 ~~l~~~~~--lllDE~~~~e~~~~~~~~~l~~~~~~~~~~i~v~h~~~ 137 (174)
T PRK13695 92 RALEEADV--IIIDEIGKMELKSPKFVKAVEEVLDSEKPVIATLHRRS 137 (174)
T ss_pred hccCCCCE--EEEECCCcchhhhHHHHHHHHHHHhCCCeEEEEECchh
Confidence 34456676 6888 6666677788888888888999999999853
No 436
>PRK13796 GTPase YqeH; Provisional
Probab=96.66 E-value=0.0063 Score=72.90 Aligned_cols=99 Identities=28% Similarity=0.357 Sum_probs=58.0
Q ss_pred chhhhhhhccCccc-eeEEeeccccCCchhHHHHHHHHHhcCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHHH
Q 000728 869 SFTNLRSRGSGLCD-IAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNE 947 (1326)
Q Consensus 869 ~F~~lr~rg~~~aD-iaILVVDa~~Gv~~QT~E~l~~l~~~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~e 947 (1326)
+|..+.. .+...| ++++|||+.+.... ....|..+. .+.|+|+|+||+|++.. ... ...+.
T Consensus 58 ~~~~~l~-~i~~~~~lIv~VVD~~D~~~s-~~~~L~~~~-~~kpviLViNK~DLl~~-----~~~-~~~i~--------- 119 (365)
T PRK13796 58 DFLKLLN-GIGDSDALVVNVVDIFDFNGS-WIPGLHRFV-GNNPVLLVGNKADLLPK-----SVK-KNKVK--------- 119 (365)
T ss_pred HHHHHHH-hhcccCcEEEEEEECccCCCc-hhHHHHHHh-CCCCEEEEEEchhhCCC-----ccC-HHHHH---------
Confidence 5666444 444455 99999999874322 233333222 36899999999999631 000 00000
Q ss_pred HHHHHHHHHHHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHH
Q 000728 948 FNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1326)
Q Consensus 948 ~~~~l~~I~~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~ 1002 (1326)
.-+...+...|+. ...++++||++|.||.+|+..|..+
T Consensus 120 -----~~l~~~~k~~g~~------------~~~v~~vSAk~g~gI~eL~~~I~~~ 157 (365)
T PRK13796 120 -----NWLRQEAKELGLR------------PVDVVLISAQKGHGIDELLEAIEKY 157 (365)
T ss_pred -----HHHHHHHHhcCCC------------cCcEEEEECCCCCCHHHHHHHHHHh
Confidence 0011122233321 1268999999999999999988654
No 437
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=96.58 E-value=0.0064 Score=59.91 Aligned_cols=59 Identities=17% Similarity=0.113 Sum_probs=42.1
Q ss_pred CEEEEeCCCCcchhhhhhhccCccceeEEeeccccCCchhHHHHHHHHHhcCC----cEEEEEec
Q 000728 858 GLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNT----EFIVALNK 918 (1326)
Q Consensus 858 ~I~IIDTPGhe~F~~lr~rg~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~v----P~IVvINK 918 (1326)
.+.|||||+..... ....+..||.+|+|++.+..-...+...+..++..+. .+.+++|+
T Consensus 44 D~IIiDtpp~~~~~--~~~~l~~aD~vlvvv~~~~~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 44 DYVVVDLGRSLDEV--SLAALDQADRVFLVTQQDLPSIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred CEEEEeCCCCcCHH--HHHHHHHcCeEEEEecCChHHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 59999999975443 3346788999999998876555556666666655543 56788885
No 438
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.56 E-value=0.0062 Score=70.77 Aligned_cols=26 Identities=15% Similarity=0.202 Sum_probs=22.9
Q ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHc
Q 000728 791 NLRSPICCIMGHVDTGKTKLLDCIRG 816 (1326)
Q Consensus 791 ~~R~piV~IlGhvdaGKTTLLd~L~~ 816 (1326)
..|+.+|+|+|-.|+||||.+..|.+
T Consensus 136 ~~~p~Vil~vGVNG~GKTTTIaKLA~ 161 (340)
T COG0552 136 EKKPFVILFVGVNGVGKTTTIAKLAK 161 (340)
T ss_pred CCCcEEEEEEecCCCchHhHHHHHHH
Confidence 45788999999999999999998864
No 439
>KOG2743 consensus Cobalamin synthesis protein [Coenzyme transport and metabolism]
Probab=96.53 E-value=0.11 Score=59.40 Aligned_cols=31 Identities=32% Similarity=0.465 Sum_probs=25.9
Q ss_pred ccccCCCCCEEEEEeCCCCCHHHHHHHHHcC
Q 000728 787 QAEENLRSPICCIMGHVDTGKTKLLDCIRGT 817 (1326)
Q Consensus 787 ~~~~~~R~piV~IlGhvdaGKTTLLd~L~~~ 817 (1326)
.....-|-|+-.|.|.-|+||||||++|+..
T Consensus 50 ~~~~~~rIPvtIITGyLGaGKtTLLn~Il~~ 80 (391)
T KOG2743|consen 50 KSSLGARIPVTIITGYLGAGKTTLLNYILTG 80 (391)
T ss_pred ccCCCCccceEEEEecccCChHHHHHHHHcc
Confidence 3445678888999999999999999999843
No 440
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=96.52 E-value=0.0073 Score=56.46 Aligned_cols=94 Identities=18% Similarity=0.126 Sum_probs=56.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchhhh-h
Q 000728 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL-R 874 (1326)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~~l-r 874 (1326)
+|+|.|..|+||||+...|...-...+ . .+ ..+. .+.|+|+||......+ .
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~~l~~~g----~--~v--~~~~--------------------d~iivD~~~~~~~~~~~~ 52 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAALAKRG----K--RV--LLID--------------------DYVLIDTPPGLGLLVLLC 52 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCC----C--eE--EEEC--------------------CEEEEeCCCCccchhhhh
Confidence 478899999999999998864321111 0 00 1111 3899999986554432 1
Q ss_pred hhccCccceeEEeeccccCCchhHHHHH----HHHHhcCCcEEEEEe
Q 000728 875 SRGSGLCDIAILVVDIMHGLEPQTIESL----NLLKMRNTEFIVALN 917 (1326)
Q Consensus 875 ~rg~~~aDiaILVVDa~~Gv~~QT~E~l----~~l~~~~vP~IVvIN 917 (1326)
...+..+|.+++|++............+ ........++.+++|
T Consensus 53 ~~~~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~N 99 (99)
T cd01983 53 LLALLAADLVIIVTTPEALAVLGARRLTEVVLELAIEGLRPVGVVVN 99 (99)
T ss_pred hhhhhhCCEEEEecCCchhhHHHHHHHHHHHHHhhccCCceEEEEeC
Confidence 3456689999999988764443333321 122223456666666
No 441
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=96.45 E-value=0.014 Score=71.56 Aligned_cols=111 Identities=18% Similarity=0.295 Sum_probs=64.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchhhhhh
Q 000728 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1326)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~~lr~ 875 (1326)
.|-++|.-++|||.||..+++..+..+..+.+...+....+.... ....+.+-|.+-. ....+..
T Consensus 427 ~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g--------------~~k~LiL~ei~~~-~~~~l~~ 491 (625)
T KOG1707|consen 427 QCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKG--------------QQKYLILREIGED-DQDFLTS 491 (625)
T ss_pred eEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeecc--------------ccceEEEeecCcc-ccccccC
Confidence 488999999999999999998776653322222221111111000 0012445555433 2222222
Q ss_pred hccCccceeEEeeccccCCchhHHHHH-HH-HHhcCCcEEEEEeccccc
Q 000728 876 RGSGLCDIAILVVDIMHGLEPQTIESL-NL-LKMRNTEFIVALNKVDRL 922 (1326)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E~l-~~-l~~~~vP~IVvINKiD~~ 922 (1326)
.- ..||+++||+|.++.....-+..+ ++ -....+|+++|.+|+|+-
T Consensus 492 ke-~~cDv~~~~YDsS~p~sf~~~a~v~~~~~~~~~~Pc~~va~K~dlD 539 (625)
T KOG1707|consen 492 KE-AACDVACLVYDSSNPRSFEYLAEVYNKYFDLYKIPCLMVATKADLD 539 (625)
T ss_pred cc-ceeeeEEEecccCCchHHHHHHHHHHHhhhccCCceEEEeeccccc
Confidence 22 679999999999864333222111 11 112679999999999985
No 442
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=96.39 E-value=0.0094 Score=57.84 Aligned_cols=73 Identities=14% Similarity=0.159 Sum_probs=45.7
Q ss_pred EEEEEe-CCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCcchhhhh
Q 000728 796 ICCIMG-HVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1326)
Q Consensus 796 iV~IlG-hvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~~lr 874 (1326)
+|+|+| ..|+||||+.-.|...-...+ . ....+..+. .+.+.|||||+..... .
T Consensus 1 ~i~~~~~kgG~Gkst~~~~la~~~~~~~----~----~vl~~d~d~---------------~~d~viiD~p~~~~~~--~ 55 (104)
T cd02042 1 VIAVANQKGGVGKTTTAVNLAAALARRG----K----RVLLIDLDP---------------QYDYIIIDTPPSLGLL--T 55 (104)
T ss_pred CEEEEeCCCCcCHHHHHHHHHHHHHhCC----C----cEEEEeCCC---------------CCCEEEEeCcCCCCHH--H
Confidence 367777 679999999888754322111 0 111111111 0459999999975433 2
Q ss_pred hhccCccceeEEeeccccC
Q 000728 875 SRGSGLCDIAILVVDIMHG 893 (1326)
Q Consensus 875 ~rg~~~aDiaILVVDa~~G 893 (1326)
...+..||.+|++++.+..
T Consensus 56 ~~~l~~ad~viv~~~~~~~ 74 (104)
T cd02042 56 RNALAAADLVLIPVQPSPL 74 (104)
T ss_pred HHHHHHCCEEEEeccCCHH
Confidence 3567789999999987653
No 443
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=96.31 E-value=0.0084 Score=64.38 Aligned_cols=41 Identities=22% Similarity=0.272 Sum_probs=33.4
Q ss_pred ceeEEeeccccCCchhHHHHHHH--HHhcCCcEEEEEeccccc
Q 000728 882 DIAILVVDIMHGLEPQTIESLNL--LKMRNTEFIVALNKVDRL 922 (1326)
Q Consensus 882 DiaILVVDa~~Gv~~QT~E~l~~--l~~~~vP~IVvINKiD~~ 922 (1326)
|++|+|+|+...+.......+.+ +...+.|+|+|+||+|++
T Consensus 1 DvVl~VvDar~p~~~~~~~i~~~~~l~~~~kp~IlVlNK~DL~ 43 (172)
T cd04178 1 DVILEVLDARDPLGCRCPQVEEAVLQAGGNKKLVLVLNKIDLV 43 (172)
T ss_pred CEEEEEEECCCCCCCCCHHHHHHHHhccCCCCEEEEEehhhcC
Confidence 78999999998777665555555 455678999999999996
No 444
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=96.27 E-value=0.0059 Score=68.59 Aligned_cols=63 Identities=10% Similarity=-0.011 Sum_probs=42.6
Q ss_pred CCCEEEEeCCCCcchhhhhhhccCccceeEEeeccccCCchhHHHHHHHHH------hcCCcEEEEEeccc
Q 000728 856 VPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLK------MRNTEFIVALNKVD 920 (1326)
Q Consensus 856 ~~~I~IIDTPGhe~F~~lr~rg~~~aDiaILVVDa~~Gv~~QT~E~l~~l~------~~~vP~IVvINKiD 920 (1326)
.+.+.||||||+... +....+..+|++|+.+..+.--...+...+..+. ..++|+.|++|.++
T Consensus 83 ~yD~iiID~pp~~~~--~~~~al~~aD~vliP~~ps~~d~~~~~~~~~~v~~~~~~~~~~l~~~iv~~~~~ 151 (231)
T PRK13849 83 GFDYALADTHGGSSE--LNNTIIASSNLLLIPTMLTPLDIDEALSTYRYVIELLLSENLAIPTAILRQRVP 151 (231)
T ss_pred CCCEEEEeCCCCccH--HHHHHHHHCCEEEEeccCcHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEEecc
Confidence 468999999998653 3445677899999888765432223333333322 23678889999987
No 445
>PHA02518 ParA-like protein; Provisional
Probab=96.22 E-value=0.024 Score=61.84 Aligned_cols=64 Identities=11% Similarity=0.074 Sum_probs=40.4
Q ss_pred CCCEEEEeCCCCcchhhhhhhccCccceeEEeeccccCCc---hhHHHHHHHHHhc--CCcE-EEEEecccc
Q 000728 856 VPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLE---PQTIESLNLLKMR--NTEF-IVALNKVDR 921 (1326)
Q Consensus 856 ~~~I~IIDTPGhe~F~~lr~rg~~~aDiaILVVDa~~Gv~---~QT~E~l~~l~~~--~vP~-IVvINKiD~ 921 (1326)
.+.++||||||. +..+....+..+|.+|+++..+.--. .++...+..+... +.|. .|++|+.+.
T Consensus 76 ~~d~viiD~p~~--~~~~~~~~l~~aD~viip~~ps~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~n~~~~ 145 (211)
T PHA02518 76 GYDYVVVDGAPQ--DSELARAALRIADMVLIPVQPSPFDIWAAPDLVELIKARQEVTDGLPKFAFIISRAIK 145 (211)
T ss_pred cCCEEEEeCCCC--ccHHHHHHHHHCCEEEEEeCCChhhHHHHHHHHHHHHHHHhhCCCCceEEEEEeccCC
Confidence 467999999997 34455667889999999998764322 2333334333222 4554 466676653
No 446
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.21 E-value=0.047 Score=68.01 Aligned_cols=60 Identities=32% Similarity=0.364 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 000728 512 KQVREMQEALARRKEAEE-RKKREEEERLRKEEEERKRLEELERQAE-EAKRRKKEKEKEKL 571 (1326)
Q Consensus 512 ~~~~~~~e~~~~~~~~eE-~~~r~EEE~~~~eeEe~~~~ee~er~~~-e~~~~k~~~~k~k~ 571 (1326)
++.+.++|++++++.+.| +..|+.|-++.|+||++++.+++|+.++ -++.|+-+.++.|+
T Consensus 357 kkererqEqErk~qlElekqLerQReiE~qrEEerkkeie~rEaar~ElEkqRqlewErar~ 418 (1118)
T KOG1029|consen 357 KKERERQEQERKAQLELEKQLERQREIERQREEERKKEIERREAAREELEKQRQLEWERARR 418 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555554433322 3344445555566666655555555333 33444445555543
No 447
>COG1162 Predicted GTPases [General function prediction only]
Probab=96.20 E-value=0.018 Score=66.53 Aligned_cols=122 Identities=25% Similarity=0.342 Sum_probs=70.7
Q ss_pred CccceeEEeeccccC-CchhHH-HHHHHHHhcCCcEEEEEeccccccCcccCCCchHHHHHHHhhHHHHHHHHHHHHHHH
Q 000728 879 GLCDIAILVVDIMHG-LEPQTI-ESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIV 956 (1326)
Q Consensus 879 ~~aDiaILVVDa~~G-v~~QT~-E~l~~l~~~~vP~IVvINKiD~~~~w~~~~~a~~~~~L~~q~~~~~~e~~~~l~~I~ 956 (1326)
...|-+||||.+.++ +...-+ .+|-++...++..||||||+|++.. .... . ....
T Consensus 78 ~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~~gi~pvIvlnK~DL~~~------~~~~---------------~--~~~~ 134 (301)
T COG1162 78 ANNDQAIIVVSLVDPDFNTNLLDRYLVLAEAGGIEPVIVLNKIDLLDD------EEAA---------------V--KELL 134 (301)
T ss_pred cccceEEEEEeccCCCCCHHHHHHHHHHHHHcCCcEEEEEEccccCcc------hHHH---------------H--HHHH
Confidence 346777777777654 333333 3455566678989999999999732 1100 0 1122
Q ss_pred HHHHHcCCchhhhhcccCCCcceeEEeCCCcCCCChhhHHHHHHHHH----------HHhHhhhhhcccccc-eeEEEEE
Q 000728 957 TQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT----------QKTMVEKLTFRNELQ-CTVLEVK 1025 (1326)
Q Consensus 957 ~~L~e~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~----------q~~l~e~l~~~~~~~-~~VlEvk 1025 (1326)
..+...| ++++.+|++++.|+..|...|...+ ..+++..|.+....+ +.|.+ .
T Consensus 135 ~~y~~~g---------------y~v~~~s~~~~~~~~~l~~~l~~~~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~-~ 198 (301)
T COG1162 135 REYEDIG---------------YPVLFVSAKNGDGLEELAELLAGKITVLLGQSGVGKSTLINALLPELNQKTGEISE-K 198 (301)
T ss_pred HHHHhCC---------------eeEEEecCcCcccHHHHHHHhcCCeEEEECCCCCcHHHHHHhhCchhhhhhhhhcc-c
Confidence 2222233 5899999999999999888775433 124555555433322 22222 3
Q ss_pred EEeCceeEEEEEEE
Q 000728 1026 VIEGHGTTIDVVLV 1039 (1326)
Q Consensus 1026 ~~~G~Gtvi~giV~ 1039 (1326)
.-.|+.||....++
T Consensus 199 ~~rGkHTTt~~~l~ 212 (301)
T COG1162 199 LGRGRHTTTHVELF 212 (301)
T ss_pred CCCCCCccceEEEE
Confidence 34666676665554
No 448
>cd03691 BipA_TypA_II BipA_TypA_II: domain II of BipA (also called TypA) having homology to domain II of the elongation factors (EFs) EF-G and EF-Tu. BipA is a highly conserved protein with global regulatory properties in Escherichia coli. BipA is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways. BipA functions as a translation factor that is required specifically for the expression of the transcriptional modulator Fis. BipA binds to ribosomes at a site that coincides with that of EF-G and has a GTPase activity that is sensitive to high GDP:GTP ratios and, is stimulated by 70S ribosomes programmed with mRNA and aminoacylated tRNAs. The growth rate-dependent induction of BipA allows the efficient expression of Fis, thereby modulating a range of downstream processes, including DNA metabolism and type III secretion.
Probab=96.16 E-value=0.028 Score=53.15 Aligned_cols=83 Identities=20% Similarity=0.262 Sum_probs=53.2
Q ss_pred cceeEEEEEEEeCceeEEEEEEEeeEecCCCEEEEccCCCce-eeeeeeccCCCCCceeeecceeecccccccccceeee
Q 000728 1017 LQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPI-VTTIRALLTPHPMKELRVKGTYLHHKQIKAAQGIKIT 1095 (1326)
Q Consensus 1017 ~~~~VlEvk~~~G~Gtvi~giV~~G~Lr~GD~IVl~g~~g~~-~~~IR~Ll~p~p~~e~rVk~~~~~~k~v~aa~gv~i~ 1095 (1326)
|++.|+.+.+.+..|.++.++|++|+|++||.|.++..+... ..+|..|+.+....... ..++ ..|-.+.
T Consensus 1 ~~~~vfk~~~d~~~g~i~~~Rv~sG~l~~g~~v~~~~~~~~~~~~~v~~l~~~~g~~~~~-------v~~~--~aG~I~~ 71 (86)
T cd03691 1 LQMLVTTLDYDDYVGRIAIGRIFRGTVKVGQQVAVVKRDGKIEKAKITKLFGFEGLKRVE-------VEEA--EAGDIVA 71 (86)
T ss_pred CeEEEEEeEecCCCCeEEEEEEEeCEEcCCCEEEEEcCCCCEEEEEEeeEeeeeCCCeeE-------CcEE--CCCCEEE
Confidence 467899999999999999999999999999999877653211 12333332222111111 1222 2344556
Q ss_pred ccccccccCCCce
Q 000728 1096 AQGLEHAIAGTGL 1108 (1326)
Q Consensus 1096 ~~gl~~~~aG~~~ 1108 (1326)
+.||+.+.+|+.+
T Consensus 72 i~gl~~~~~Gdtl 84 (86)
T cd03691 72 IAGIEDITIGDTI 84 (86)
T ss_pred EECCCCCccccee
Confidence 6788887788765
No 449
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.16 E-value=0.038 Score=68.75 Aligned_cols=11 Identities=55% Similarity=1.008 Sum_probs=5.8
Q ss_pred EecCCCEEEEc
Q 000728 1042 VLHEGDQIVVC 1052 (1326)
Q Consensus 1042 ~Lr~GD~IVl~ 1052 (1326)
+++.||.|++.
T Consensus 924 t~~egd~iLvt 934 (1118)
T KOG1029|consen 924 TFHEGDEILVT 934 (1118)
T ss_pred cccccceEEEe
Confidence 34566665543
No 450
>KOG2484 consensus GTPase [General function prediction only]
Probab=96.15 E-value=0.0045 Score=72.83 Aligned_cols=60 Identities=20% Similarity=0.376 Sum_probs=46.3
Q ss_pred cCCCCCEEEEEeCCCCCHHHHHHHHHcCcc-cccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCCc
Q 000728 790 ENLRSPICCIMGHVDTGKTKLLDCIRGTNV-QEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHE 868 (1326)
Q Consensus 790 ~~~R~piV~IlGhvdaGKTTLLd~L~~~~v-~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGhe 868 (1326)
...+++.|+|+|.+++||||||++|....+ ..|..+|+|..+-...+. ..|.|+|.||..
T Consensus 248 ~lk~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~smqeV~Ld-------------------k~i~llDsPgiv 308 (435)
T KOG2484|consen 248 ELKTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTRSMQEVKLD-------------------KKIRLLDSPGIV 308 (435)
T ss_pred ccCcceEeeeecCCCCChhHHHHHHHHhccccCCCCccchhhhhheecc-------------------CCceeccCCcee
Confidence 345777899999999999999999987654 567778888765444332 359999999953
No 451
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=96.13 E-value=0.003 Score=65.59 Aligned_cols=23 Identities=26% Similarity=0.541 Sum_probs=20.3
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcC
Q 000728 795 PICCIMGHVDTGKTKLLDCIRGT 817 (1326)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~~ 817 (1326)
|+|+|+|+.|+|||||+..|+..
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 78999999999999999999754
No 452
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.13 E-value=0.004 Score=62.46 Aligned_cols=118 Identities=19% Similarity=0.202 Sum_probs=56.8
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEecccc-chhhhhhhccccccCCCCEEEEeCCCCcchhhh
Q 000728 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAEN-IRERTRELKANATLKVPGLLVIDTPGHESFTNL 873 (1326)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~-~~~~~~~v~~~~~~~~~~I~IIDTPGhe~F~~l 873 (1326)
-.++|.|.+|+|||+|+.++............ ...+-.+.++... .......+.......... ......+...
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~l~~~ 78 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQLNAEAEIKN-HPDVIYVNCPSSRTPRDFAQEILEALGLPLKS-----RQTSDELRSL 78 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHHHHHHHHHCC-CEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS-----TS-HHHHHHH
T ss_pred cccEEEcCCCCCHHHHHHHHHHHhHHhhhccC-CCcEEEEEeCCCCCHHHHHHHHHHHhCccccc-----cCCHHHHHHH
Confidence 35899999999999999999865322111001 1111112222111 011111111111111111 1112223344
Q ss_pred hhhccCccceeEEeeccccCC-chhHHHHHHHHHh-cCCcEEEEEec
Q 000728 874 RSRGSGLCDIAILVVDIMHGL-EPQTIESLNLLKM-RNTEFIVALNK 918 (1326)
Q Consensus 874 r~rg~~~aDiaILVVDa~~Gv-~~QT~E~l~~l~~-~~vP~IVvINK 918 (1326)
....+......|||||-.+.+ .....+.|..+.. .++++|++.+-
T Consensus 79 ~~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 79 LIDALDRRRVVLLVIDEADHLFSDEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTCSCBEEEEEEESS
T ss_pred HHHHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHhCCCCeEEEEECh
Confidence 444555555589999987777 6666666655543 45778887764
No 453
>KOG4181 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.08 E-value=0.012 Score=67.92 Aligned_cols=25 Identities=20% Similarity=0.414 Sum_probs=21.3
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCc
Q 000728 794 SPICCIMGHVDTGKTKLLDCIRGTN 818 (1326)
Q Consensus 794 ~piV~IlGhvdaGKTTLLd~L~~~~ 818 (1326)
-.+|+++|..|+||||||+.|...+
T Consensus 188 f~VIgvlG~QgsGKStllslLaans 212 (491)
T KOG4181|consen 188 FTVIGVLGGQGSGKSTLLSLLAANS 212 (491)
T ss_pred eeEEEeecCCCccHHHHHHHHhccC
Confidence 3469999999999999999997543
No 454
>PF03144 GTP_EFTU_D2: Elongation factor Tu domain 2; InterPro: IPR004161 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. EF1A (also known as EF-1alpha or EF-Tu) is a G-protein. It forms a ternary complex of EF1A-GTP-aminoacyltRNA. The binding of aminoacyl-tRNA stimulates GTP hydrolysis by EF1A, causing a conformational change in EF1A that causes EF1A-GDP to detach from the ribosome, leaving the aminoacyl-tRNA attached at the A-site. Only the cognate aminoacyl-tRNA can induce the required conformational change in EF1A through its tight anticodon-codon binding [, ]. EF1A-GDP is returned to its active state, EF1A-GTP, through the action of another elongation factor, EF1B (also known as EF-Ts or EF-1beta/gamma/delta). EF1A consists of three structural domains. This entry represents domain 2 of EF2, which adopts a beta-barrel structure, and is involved in binding to both charged tRNA []. This domain is structurally related to the C-terminal domain of EF2 (IPR004160 from INTERPRO), to which it displays weak sequence matches. This domain is also found in other proteins such as translation initiation factor IF-2 and tetracycline-resistance proteins. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 3MCA_A 3AGJ_E 1SKQ_B 1JNY_A 1S0U_A 1ZUN_B 3SFS_W 3UOQ_W 2H5E_B 2XEX_A ....
Probab=96.00 E-value=0.016 Score=52.85 Aligned_cols=69 Identities=22% Similarity=0.233 Sum_probs=45.2
Q ss_pred eeEEEEEEEeeEecCCCEEEEccCCC---ceeeeeeeccCCCCCceeeecceeecccccccccceeeecccccc-ccCCC
Q 000728 1031 GTTIDVVLVNGVLHEGDQIVVCGLQG---PIVTTIRALLTPHPMKELRVKGTYLHHKQIKAAQGIKITAQGLEH-AIAGT 1106 (1326)
Q Consensus 1031 Gtvi~giV~~G~Lr~GD~IVl~g~~g---~~~~~IR~Ll~p~p~~e~rVk~~~~~~k~v~aa~gv~i~~~gl~~-~~aG~ 1106 (1326)
|++++++|++|+|+.||.|++++... +...+|+.|+.++......+. .+..|+.+.+.+++. ...|+
T Consensus 1 G~v~~grV~sG~l~~gd~v~~~~~~~~~~~~~~~I~~i~~~~~~~~~~~~---------~~~~G~~~~~~~~~~~i~~Gd 71 (74)
T PF03144_consen 1 GRVATGRVYSGTLKKGDKVRVLPNGTGKKGQVVKIKSIFMFNGDVQEAVA---------GANAGDIVAIIGLNDAIRRGD 71 (74)
T ss_dssp EEEEEEEEEESEEETTEEEEEESTTTTEECEEEEEEEEEETTEEESEEET---------TEEEEEEEESSSGCSCSSTTE
T ss_pred CEEEEEEEEEeEEcCCCEEEECccCCcceeeeeecccccccccCccEeCC---------ceeeEEEEEEcCCCCCcCcCC
Confidence 78999999999999999999966221 234666666554421111111 123467777788888 57776
Q ss_pred ce
Q 000728 1107 GL 1108 (1326)
Q Consensus 1107 ~~ 1108 (1326)
.|
T Consensus 72 tl 73 (74)
T PF03144_consen 72 TL 73 (74)
T ss_dssp EE
T ss_pred EE
Confidence 55
No 455
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=95.93 E-value=0.046 Score=65.39 Aligned_cols=22 Identities=23% Similarity=0.341 Sum_probs=19.6
Q ss_pred CEEEEEeCCCCCHHHHHHHHHc
Q 000728 795 PICCIMGHVDTGKTKLLDCIRG 816 (1326)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~ 816 (1326)
+.|+|+|+|-+|||||+.+|..
T Consensus 18 IYiGVVGPVRTGKSTFIKRFMe 39 (492)
T PF09547_consen 18 IYIGVVGPVRTGKSTFIKRFME 39 (492)
T ss_pred eEEEeecCcccCchhHHHHHHH
Confidence 4599999999999999999964
No 456
>cd03690 Tet_II Tet_II: This subfamily represents domain II of ribosomal protection proteins Tet(M) and Tet(O). This domain has homology to domain II of the elongation factors EF-G and EF-2. Tet(M) and Tet(O) catalyze the release of tetracycline (Tc) from the ribosome in a GTP-dependent manner thereby mediating Tc resistance. Tcs are broad-spectrum antibiotics. Typical Tcs bind to the ribosome and inhibit the elongation phase of protein synthesis, by inhibiting the occupation of site A by aminoacyl-tRNA.
Probab=95.91 E-value=0.028 Score=53.26 Aligned_cols=81 Identities=20% Similarity=0.138 Sum_probs=55.1
Q ss_pred cccceeEEEEEEEeCceeEEEEEEEeeEecCCCEEEEccCCCceeeeeeeccCCCCCceeeecceeecccccc-ccccee
Q 000728 1015 NELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIK-AAQGIK 1093 (1326)
Q Consensus 1015 ~~~~~~VlEvk~~~G~Gtvi~giV~~G~Lr~GD~IVl~g~~g~~~~~IR~Ll~p~p~~e~rVk~~~~~~k~v~-aa~gv~ 1093 (1326)
.||.+.|+.+.+.+..|.+..++|++|+|+.|+.|.+.. ....+|..|+.+...... .+. +..|..
T Consensus 2 ~p~~~~Vfkv~~d~~~G~la~~RV~sG~l~~g~~v~~~~---~~~~~v~~l~~~~g~~~~----------~v~~~~aGdI 68 (85)
T cd03690 2 SELSGTVFKIERDDKGERLAYLRLYSGTLRLRDSVRVNR---EEKIKITELRVFNNGEVV----------TADTVTAGDI 68 (85)
T ss_pred CCcEEEEEEeEECCCCCeEEEEEEccCEEcCCCEEEeCC---CcEEEeceeEEEeCCCeE----------ECcEECCCCE
Confidence 467889999999999999999999999999999886543 111233344333222211 122 234666
Q ss_pred eeccccccccCCCce
Q 000728 1094 ITAQGLEHAIAGTGL 1108 (1326)
Q Consensus 1094 i~~~gl~~~~aG~~~ 1108 (1326)
+++.||+...+|+.+
T Consensus 69 ~ai~gl~~~~~Gdtl 83 (85)
T cd03690 69 AILTGLKGLRVGDVL 83 (85)
T ss_pred EEEECCCCCcCcccc
Confidence 777899888888765
No 457
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=95.89 E-value=0.023 Score=63.65 Aligned_cols=64 Identities=22% Similarity=0.205 Sum_probs=46.0
Q ss_pred CCCEEEEeCCCCcchhhhhhhccCccceeEEeeccccCCchhHHHHHHHHHhcCCcE-EEEEecccc
Q 000728 856 VPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEF-IVALNKVDR 921 (1326)
Q Consensus 856 ~~~I~IIDTPGhe~F~~lr~rg~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~vP~-IVvINKiD~ 921 (1326)
.+.+.|||||+..... ....+..+|.+|+|++....-...+...+..+...++++ .|++|+++.
T Consensus 108 ~yD~VIiD~p~~~~~~--~~~~l~~ad~vliv~~~~~~s~~~~~~~~~~~~~~~~~~~~vv~N~~~~ 172 (251)
T TIGR01969 108 DTDFLLIDAPAGLERD--AVTALAAADELLLVVNPEISSITDALKTKIVAEKLGTAILGVVLNRVTR 172 (251)
T ss_pred hCCEEEEeCCCccCHH--HHHHHHhCCeEEEEECCCCchHHHHHHHHHHHHhcCCceEEEEEECCCc
Confidence 4679999999865543 333456799999999986544445555666666667774 589999985
No 458
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=95.89 E-value=0.056 Score=71.82 Aligned_cols=29 Identities=21% Similarity=0.190 Sum_probs=11.8
Q ss_pred eCCCCCHHHHH-HHHHcCCeEEEcchHhHH
Q 000728 1200 FDVKVTPEARE-LAEELGVKIFIADIIYHL 1228 (1326)
Q Consensus 1200 Fnvkv~~~a~~-~A~~~gV~I~~~~IIY~L 1228 (1326)
||++-...... -|+-.+--.+....||.|
T Consensus 978 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1007 (1021)
T PTZ00266 978 YNAKKEYHDEEERAELANSYTLQKRNMYAL 1007 (1021)
T ss_pred cchhhhcchhhhhhhccccceeeccchHHH
Confidence 55554333322 233233333444455654
No 459
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.82 E-value=0.022 Score=68.45 Aligned_cols=128 Identities=23% Similarity=0.190 Sum_probs=68.5
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCcccccc----cCceeeeeeeeEeccccchhhhhhhc------------------
Q 000728 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGE----AGGITQQIGATYFPAENIRERTRELK------------------ 849 (1326)
Q Consensus 792 ~R~piV~IlGhvdaGKTTLLd~L~~~~v~~ge----~gGITq~iga~~~~~~~~~~~~~~v~------------------ 849 (1326)
-|+.+|+|||-.|+||||-|-.|...-.+..- +.==|...|+ .+.++.+...+.
T Consensus 376 krPYVi~fvGVNGVGKSTNLAKIayWLlqNkfrVLIAACDTFRsGA----vEQLrtHv~rl~~l~~~~v~lfekGYgkd~ 451 (587)
T KOG0781|consen 376 KRPYVISFVGVNGVGKSTNLAKIAYWLLQNKFRVLIAACDTFRSGA----VEQLRTHVERLSALHGTMVELFEKGYGKDA 451 (587)
T ss_pred CCCeEEEEEeecCccccchHHHHHHHHHhCCceEEEEeccchhhhH----HHHHHHHHHHHHHhccchhHHHhhhcCCCh
Confidence 48999999999999999999887643211110 0000000010 011111111110
Q ss_pred -----c---ccccCCCCEEEEeCCC--Ccchhhhhh----hccCccceeEEeeccccCCc--hhHHHHHHHHHhcCCcE-
Q 000728 850 -----A---NATLKVPGLLVIDTPG--HESFTNLRS----RGSGLCDIAILVVDIMHGLE--PQTIESLNLLKMRNTEF- 912 (1326)
Q Consensus 850 -----~---~~~~~~~~I~IIDTPG--he~F~~lr~----rg~~~aDiaILVVDa~~Gv~--~QT~E~l~~l~~~~vP~- 912 (1326)
. ....++..+.+|||.| |.+-.-|+. .-...+|.+|+|--|--|-. .|...+-..+..+..|.
T Consensus 452 a~vak~AI~~a~~~gfDVvLiDTAGR~~~~~~lm~~l~k~~~~~~pd~i~~vgealvg~dsv~q~~~fn~al~~~~~~r~ 531 (587)
T KOG0781|consen 452 AGVAKEAIQEARNQGFDVVLIDTAGRMHNNAPLMTSLAKLIKVNKPDLILFVGEALVGNDSVDQLKKFNRALADHSTPRL 531 (587)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeccccccCChhHHHHHHHHHhcCCCceEEEehhhhhCcHHHHHHHHHHHHHhcCCCccc
Confidence 0 1123456799999999 444333332 23456899999977654432 23333333344444443
Q ss_pred --EEEEecccccc
Q 000728 913 --IVALNKVDRLY 923 (1326)
Q Consensus 913 --IVvINKiD~~~ 923 (1326)
-|+|+|+|.+.
T Consensus 532 id~~~ltk~dtv~ 544 (587)
T KOG0781|consen 532 IDGILLTKFDTVD 544 (587)
T ss_pred cceEEEEeccchh
Confidence 36899999863
No 460
>cd01342 Translation_Factor_II_like Translation_Factor_II_like: Elongation factor Tu (EF-Tu) domain II-like proteins. Elongation factor Tu consists of three structural domains, this family represents the second domain. Domain II adopts a beta barrel structure and is involved in binding to charged tRNA. Domain II is found in other proteins such as elongation factor G and translation initiation factor IF-2. This group also includes the C2 subdomain of domain IV of IF-2 that has the same fold as domain II of (EF-Tu). Like IF-2 from certain prokaryotes such as Thermus thermophilus, mitochondrial IF-2 lacks domain II, which is thought to be involved in binding of E.coli IF-2 to 30S subunits.
Probab=95.72 E-value=0.066 Score=48.21 Aligned_cols=49 Identities=24% Similarity=0.335 Sum_probs=38.2
Q ss_pred ceeEEEEEEEeCceeEEEEEEEeeEecCCCEEEEccCCCceeeeeeecc
Q 000728 1018 QCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALL 1066 (1326)
Q Consensus 1018 ~~~VlEvk~~~G~Gtvi~giV~~G~Lr~GD~IVl~g~~g~~~~~IR~Ll 1066 (1326)
.+.|..++...+.|.++.++|.+|+|++|+.+.+++........|+.|.
T Consensus 2 ~~~v~~~~~~~~~g~v~~~rv~~G~l~~g~~v~~~~~~~~~~~~i~~i~ 50 (83)
T cd01342 2 RALVFKVFKDKGRGTVATGRVESGTLKKGDKVRVGPGGGGVKGKVKSLK 50 (83)
T ss_pred eeEEEEEEEeCCceEEEEEEEeeCEEecCCEEEEecCCceeEEEEeEeE
Confidence 5678899999999999999999999999999988764333334444443
No 461
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=95.66 E-value=0.094 Score=65.24 Aligned_cols=16 Identities=13% Similarity=0.137 Sum_probs=10.6
Q ss_pred HhcCCcEEEEEecccc
Q 000728 906 KMRNTEFIVALNKVDR 921 (1326)
Q Consensus 906 ~~~~vP~IVvINKiD~ 921 (1326)
....-|+++|.-|-|+
T Consensus 1188 ~~~kpP~lLvAGkDDm 1203 (1259)
T KOG0163|consen 1188 HPDKPPILLVAGKDDM 1203 (1259)
T ss_pred cCCCCCeEEEecCchH
Confidence 4445677777777775
No 462
>cd03688 eIF2_gamma_II eIF2_gamma_II: this subfamily represents the domain II of the gamma subunit of eukaryotic translation initiation factor 2 (eIF2-gamma) found in Eukaryota and Archaea. eIF2 is a G protein that delivers the methionyl initiator tRNA to the small ribosomal subunit and releases it upon GTP hydrolysis after the recognition of the initiation codon. eIF2 is composed three subunits, alpha, beta and gamma. Subunit gamma shows strongest conservation, and it confers both tRNA binding and GTP/GDP binding.
Probab=95.62 E-value=0.06 Score=53.51 Aligned_cols=39 Identities=23% Similarity=0.285 Sum_probs=35.2
Q ss_pred ccccceeEEEEEEEe--------CceeEEEEEEEeeEecCCCEEEEc
Q 000728 1014 RNELQCTVLEVKVIE--------GHGTTIDVVLVNGVLHEGDQIVVC 1052 (1326)
Q Consensus 1014 ~~~~~~~VlEvk~~~--------G~Gtvi~giV~~G~Lr~GD~IVl~ 1052 (1326)
..++.+.|..+|.+. ++|.|+.+.|.+|+|+.||.|-+.
T Consensus 3 ~~pp~M~V~RsFdinkPG~~~~~l~GgVigGsi~~G~lkvgdeIEIr 49 (113)
T cd03688 3 TSPPRMIVIRSFDVNKPGTEVDDLKGGVAGGSLLQGVLKVGDEIEIR 49 (113)
T ss_pred CCCceEEEEEEEecCCCCCccccceeeEEEEEEEEEEEeCCCEEEEe
Confidence 457889999999998 999999999999999999999664
No 463
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=95.61 E-value=0.063 Score=52.78 Aligned_cols=25 Identities=24% Similarity=0.332 Sum_probs=21.7
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCc
Q 000728 794 SPICCIMGHVDTGKTKLLDCIRGTN 818 (1326)
Q Consensus 794 ~piV~IlGhvdaGKTTLLd~L~~~~ 818 (1326)
...|+|+|++|+|||||+..|...-
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~ 26 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALAREL 26 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhcc
Confidence 3569999999999999999998654
No 464
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.57 E-value=0.011 Score=68.30 Aligned_cols=25 Identities=20% Similarity=0.365 Sum_probs=21.3
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcC
Q 000728 793 RSPICCIMGHVDTGKTKLLDCIRGT 817 (1326)
Q Consensus 793 R~piV~IlGhvdaGKTTLLd~L~~~ 817 (1326)
+..+|+|+|++|+||||++..|...
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~ 217 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAAR 217 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4458999999999999999988643
No 465
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=95.51 E-value=0.024 Score=62.75 Aligned_cols=67 Identities=22% Similarity=0.235 Sum_probs=38.3
Q ss_pred CCEEEEeCCCCcchh------hhhhhccCccce---eEEeeccccCCchhH-----HHHHHHHHhcCCcEEEEEeccccc
Q 000728 857 PGLLVIDTPGHESFT------NLRSRGSGLCDI---AILVVDIMHGLEPQT-----IESLNLLKMRNTEFIVALNKVDRL 922 (1326)
Q Consensus 857 ~~I~IIDTPGhe~F~------~lr~rg~~~aDi---aILVVDa~~Gv~~QT-----~E~l~~l~~~~vP~IVvINKiD~~ 922 (1326)
.++.|+|+||+..|. +...+.+...|+ +|-+||+.---.|.. .-++..+.....|-|=|+.|+|+.
T Consensus 97 ~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS~lL~sl~tMl~melphVNvlSK~Dl~ 176 (290)
T KOG1533|consen 97 DHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFISSLLVSLATMLHMELPHVNVLSKADLL 176 (290)
T ss_pred CcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHHHHHHHHHHHHhhcccchhhhhHhHHH
Confidence 469999999965531 112233333444 344455432222222 223344556678999999999986
Q ss_pred c
Q 000728 923 Y 923 (1326)
Q Consensus 923 ~ 923 (1326)
.
T Consensus 177 ~ 177 (290)
T KOG1533|consen 177 K 177 (290)
T ss_pred H
Confidence 4
No 466
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=95.50 E-value=0.037 Score=59.58 Aligned_cols=26 Identities=31% Similarity=0.344 Sum_probs=23.4
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcC
Q 000728 792 LRSPICCIMGHVDTGKTKLLDCIRGT 817 (1326)
Q Consensus 792 ~R~piV~IlGhvdaGKTTLLd~L~~~ 817 (1326)
+|.|+|+|+|..|+|||||+.+|...
T Consensus 4 ~~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 4 TMIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CCceEEEEECCCCChHHHHHHHHHHH
Confidence 57889999999999999999999754
No 467
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.49 E-value=0.032 Score=65.56 Aligned_cols=29 Identities=14% Similarity=0.189 Sum_probs=23.8
Q ss_pred ccccCCCCCEEEEEeCCCCCHHHHHHHHH
Q 000728 787 QAEENLRSPICCIMGHVDTGKTKLLDCIR 815 (1326)
Q Consensus 787 ~~~~~~R~piV~IlGhvdaGKTTLLd~L~ 815 (1326)
..+..-++-+|.|+|..|+||||.+-.|.
T Consensus 94 ~~~~K~kpsVimfVGLqG~GKTTtc~KlA 122 (483)
T KOG0780|consen 94 LQPKKGKPSVIMFVGLQGSGKTTTCTKLA 122 (483)
T ss_pred cccccCCCcEEEEEeccCCCcceeHHHHH
Confidence 34455677789999999999999998875
No 468
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=95.42 E-value=0.07 Score=60.92 Aligned_cols=65 Identities=14% Similarity=0.143 Sum_probs=39.7
Q ss_pred CCCEEEEeCCCCcchhhhhhhccCccceeEEeeccccCCc---hhHHHHHHHH-HhcCCcE-EEEEecccc
Q 000728 856 VPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLE---PQTIESLNLL-KMRNTEF-IVALNKVDR 921 (1326)
Q Consensus 856 ~~~I~IIDTPGhe~F~~lr~rg~~~aDiaILVVDa~~Gv~---~QT~E~l~~l-~~~~vP~-IVvINKiD~ 921 (1326)
.+.+.||||||......+ ...+..+|.+|+++..+..-. ..++..+..+ ...++++ .|++|+++.
T Consensus 115 ~yD~vIIDt~g~~~~~~~-~~al~~aD~vlip~~p~~~~l~~~~~~~~~i~~~~~~~~l~~~giV~Nr~~~ 184 (267)
T cd02032 115 EYDVILFDVLGDVVCGGF-AAPLNYADYALIVTDNDFDSIFAANRIAAAVREKAKTYKVRLAGLIANRTDK 184 (267)
T ss_pred cCCEEEEeCCCCcccccc-hhhhhhcCEEEEEecCCcccHHHHHHHHHHHHHHhhccCCceEEEEEeCCCH
Confidence 467999999986543322 223778999999988754221 2333333322 2345654 378999884
No 469
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=95.40 E-value=0.11 Score=64.51 Aligned_cols=8 Identities=38% Similarity=0.310 Sum_probs=3.8
Q ss_pred EEeecccc
Q 000728 885 ILVVDIMH 892 (1326)
Q Consensus 885 ILVVDa~~ 892 (1326)
+|+|...+
T Consensus 1194 ~lLvAGkD 1201 (1259)
T KOG0163|consen 1194 ILLVAGKD 1201 (1259)
T ss_pred eEEEecCc
Confidence 44555444
No 470
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=95.39 E-value=0.025 Score=68.36 Aligned_cols=66 Identities=21% Similarity=0.193 Sum_probs=49.7
Q ss_pred CCEEEEeCCCCcchhhhhhhccCccceeEEeeccccC--------C---chhHHHHHHHHHh----cCCcEEEEEecccc
Q 000728 857 PGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHG--------L---EPQTIESLNLLKM----RNTEFIVALNKVDR 921 (1326)
Q Consensus 857 ~~I~IIDTPGhe~F~~lr~rg~~~aDiaILVVDa~~G--------v---~~QT~E~l~~l~~----~~vP~IVvINKiD~ 921 (1326)
..+.|||+.|+..-..-|..++..++++|+||+.++= - +..++..+..+.. .++||||++||+|+
T Consensus 236 ~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~D~ 315 (389)
T PF00503_consen 236 RKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKIDL 315 (389)
T ss_dssp EEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-HHH
T ss_pred cccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecHHH
Confidence 4589999999999999999999999999999997531 1 2233444444333 36899999999997
Q ss_pred c
Q 000728 922 L 922 (1326)
Q Consensus 922 ~ 922 (1326)
.
T Consensus 316 f 316 (389)
T PF00503_consen 316 F 316 (389)
T ss_dssp H
T ss_pred H
Confidence 5
No 471
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.27 E-value=0.034 Score=57.11 Aligned_cols=23 Identities=22% Similarity=0.238 Sum_probs=19.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCc
Q 000728 796 ICCIMGHVDTGKTKLLDCIRGTN 818 (1326)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~~~ 818 (1326)
+++|+|.+|+|||||+..|....
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~ 23 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNI 23 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHH
Confidence 37899999999999999997543
No 472
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.27 E-value=0.22 Score=52.75 Aligned_cols=21 Identities=33% Similarity=0.302 Sum_probs=18.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHc
Q 000728 796 ICCIMGHVDTGKTKLLDCIRG 816 (1326)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~ 816 (1326)
.|.|.|.||+|||||+.+|..
T Consensus 7 ki~ITG~PGvGKtTl~~ki~e 27 (179)
T COG1618 7 KIFITGRPGVGKTTLVLKIAE 27 (179)
T ss_pred EEEEeCCCCccHHHHHHHHHH
Confidence 489999999999999988863
No 473
>PRK01889 GTPase RsgA; Reviewed
Probab=95.26 E-value=0.016 Score=69.16 Aligned_cols=24 Identities=21% Similarity=0.533 Sum_probs=21.3
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCc
Q 000728 795 PICCIMGHVDTGKTKLLDCIRGTN 818 (1326)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~~~ 818 (1326)
-+++|+|++|+|||||++.|++..
T Consensus 196 ~~~~lvG~sgvGKStLin~L~g~~ 219 (356)
T PRK01889 196 KTVALLGSSGVGKSTLVNALLGEE 219 (356)
T ss_pred CEEEEECCCCccHHHHHHHHHHhc
Confidence 479999999999999999998643
No 474
>cd04088 EFG_mtEFG_II EFG_mtEFG_II: this subfamily represents the domain II of elongation factor G (EF-G) in bacteria and, the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2)_like proteins found in eukaryotes. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more compl
Probab=95.21 E-value=0.067 Score=50.11 Aligned_cols=80 Identities=21% Similarity=0.175 Sum_probs=52.1
Q ss_pred ceeEEEEEEEeCceeEEEEEEEeeEecCCCEEEEccCCCceeeeeeeccCCCCCceeeecceeecccccccccceeeecc
Q 000728 1018 QCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAAQGIKITAQ 1097 (1326)
Q Consensus 1018 ~~~VlEvk~~~G~Gtvi~giV~~G~Lr~GD~IVl~g~~g~~~~~IR~Ll~p~p~~e~rVk~~~~~~k~v~aa~gv~i~~~ 1097 (1326)
.+.|+.+.+.+..|.+..++|++|+|++||.|.+++... ..+|..|+.+.+.....+ .+ +..|..+.+.
T Consensus 2 ~a~Vfk~~~d~~~G~~~~~Rv~sG~l~~g~~v~~~~~~~--~~~v~~l~~~~g~~~~~v-------~~--~~aGdI~~i~ 70 (83)
T cd04088 2 VALVFKTIHDPFVGKLSFVRVYSGTLKAGSTLYNSTKGK--KERVGRLLRMHGKKQEEV-------EE--AGAGDIGAVA 70 (83)
T ss_pred EEEEEEcccCCCCceEEEEEEecCEEcCCCEEEECCCCc--EEEeeEEEEEcCCCceEC-------CE--eCCCCEEEEE
Confidence 456788888888899999999999999999998776431 123333332332221111 11 2345556667
Q ss_pred ccccccCCCce
Q 000728 1098 GLEHAIAGTGL 1108 (1326)
Q Consensus 1098 gl~~~~aG~~~ 1108 (1326)
|++...+|+.+
T Consensus 71 g~~~~~~Gdtl 81 (83)
T cd04088 71 GLKDTATGDTL 81 (83)
T ss_pred CCCCCccCCEe
Confidence 88887788765
No 475
>KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=95.11 E-value=0.027 Score=72.00 Aligned_cols=134 Identities=18% Similarity=0.221 Sum_probs=81.4
Q ss_pred ccCCCCCEEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeee-----------------------eeEeccccchh--
Q 000728 789 EENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIG-----------------------ATYFPAENIRE-- 843 (1326)
Q Consensus 789 ~~~~R~piV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~ig-----------------------a~~~~~~~~~~-- 843 (1326)
..-+-.|.|+|+|..++|||+.|+.|++..+..-..+.+|...- ..+.++...+.
T Consensus 24 ~~~i~lP~I~vvG~QSsGKSSvLE~lvG~~flpRg~givTRrPlvlqL~~~~~~~~e~~~f~~h~~~~~~~D~~~vrkeI 103 (657)
T KOG0446|consen 24 SSFIPLPQIVVVGGQSSGKSSVLESLVGFVFLPRGVGIVTRRPLILQLSIVAGGDEEEASFLTHDKKKRFTDFEEVRKEI 103 (657)
T ss_pred CCcccCCceEEecCCCCcchhHHHHhhccccccccccceecccceeecccccCCcccchhccccccccccCCHHHHHHHH
Confidence 34466778999999999999999999985544322222332110 00101110000
Q ss_pred --hhhhhcc--------ccc-----cCCCCEEEEeCCCCcc-------------hhhhhhhccCccceeEEeeccccCCc
Q 000728 844 --RTRELKA--------NAT-----LKVPGLLVIDTPGHES-------------FTNLRSRGSGLCDIAILVVDIMHGLE 895 (1326)
Q Consensus 844 --~~~~v~~--------~~~-----~~~~~I~IIDTPGhe~-------------F~~lr~rg~~~aDiaILVVDa~~Gv~ 895 (1326)
.+..+.. ... -..+.+++||+||... ...|...++...+.+||+|...+ ..
T Consensus 104 ~~et~~~~g~~kgiS~~pI~L~i~s~~v~~lTLvDlPG~tkvpv~dqp~di~~qI~~mi~~yi~~~~~iILav~~an-~d 182 (657)
T KOG0446|consen 104 RSETDRITGSNKGISPVPITLKIFSALVANLTLVDLPGLTKVPVADQPDDIEEEIKSMIEEYIEKPNRIILAVTPAN-SD 182 (657)
T ss_pred HhhHHHhcCCCCCcCCCCceeeecCCCCchhhhcCCCCCcccccCCCCccHHHHHHHHHHHhccccchhhhhccchh-hh
Confidence 0000000 000 1234699999999433 46788889999999999998765 34
Q ss_pred hhHHHHHHHHHhc---CCcEEEEEecccccc
Q 000728 896 PQTIESLNLLKMR---NTEFIVALNKVDRLY 923 (1326)
Q Consensus 896 ~QT~E~l~~l~~~---~vP~IVvINKiD~~~ 923 (1326)
--|.+.|.+++.. +.-.|-|++|.|+..
T Consensus 183 ~ats~alkiarevDp~g~RTigvitK~Dlmd 213 (657)
T KOG0446|consen 183 IATSPALVVAREVDPGGSRTLEVITKFDFMD 213 (657)
T ss_pred hhcCHHHHHHHhhCCCccchhHHhhhHHhhh
Confidence 4556667666654 466888888888753
No 476
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.10 E-value=0.016 Score=59.07 Aligned_cols=21 Identities=19% Similarity=0.341 Sum_probs=19.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHc
Q 000728 796 ICCIMGHVDTGKTKLLDCIRG 816 (1326)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~ 816 (1326)
+|.|+|++|+|||||+..|..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999973
No 477
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=94.92 E-value=0.052 Score=60.68 Aligned_cols=63 Identities=16% Similarity=0.167 Sum_probs=40.5
Q ss_pred CCEEEEeCCCCcchhhhhhhccCccceeEEeeccccCC---chhHHHHHHHHH---hcCCcEEEEEecccc
Q 000728 857 PGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGL---EPQTIESLNLLK---MRNTEFIVALNKVDR 921 (1326)
Q Consensus 857 ~~I~IIDTPGhe~F~~lr~rg~~~aDiaILVVDa~~Gv---~~QT~E~l~~l~---~~~vP~IVvINKiD~ 921 (1326)
+.+.||||+|..+..+ ...+..+|++|+=+-.+..- ..+|+.++..+. ...+|+-|++|++.-
T Consensus 84 ~d~VlvDleG~as~~~--~~aia~sDlVlIP~~~s~lD~~eA~~t~~~v~~~~~~~~~~ip~~Vl~Tr~~~ 152 (231)
T PF07015_consen 84 FDFVLVDLEGGASELN--DYAIARSDLVLIPMQPSQLDADEAAKTFKWVRRLEKAERRDIPAAVLFTRVPA 152 (231)
T ss_pred CCEEEEeCCCCCchhH--HHHHHHCCEEEECCCCChHHHHHHHHHHHHHHHHHHhhCCCCCeeEEEecCCc
Confidence 5699999999765543 33455789887755443221 234555544332 346899999999974
No 478
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=94.80 E-value=0.085 Score=64.04 Aligned_cols=23 Identities=22% Similarity=0.432 Sum_probs=20.3
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcC
Q 000728 795 PICCIMGHVDTGKTKLLDCIRGT 817 (1326)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~~ 817 (1326)
.+|||+|+.++|||||++.|...
T Consensus 220 ~~IvI~G~~gsGKTTL~~~La~~ 242 (399)
T PRK08099 220 RTVAILGGESSGKSTLVNKLANI 242 (399)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 34999999999999999999743
No 479
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=94.79 E-value=0.066 Score=62.06 Aligned_cols=102 Identities=19% Similarity=0.261 Sum_probs=61.9
Q ss_pred ccCCCCCEEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccchhhhhhhccccccCCCCEEEEeCCCC-
Q 000728 789 EENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH- 867 (1326)
Q Consensus 789 ~~~~R~piV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~~~~~~~v~~~~~~~~~~I~IIDTPGh- 867 (1326)
+...|.|.+.|+|.+|.|||+|+.+++..+-......+. .+ .|.++.+|.-
T Consensus 56 P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~-------~~---------------------PVv~vq~P~~p 107 (302)
T PF05621_consen 56 PKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAE-------RI---------------------PVVYVQMPPEP 107 (302)
T ss_pred CcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCc-------cc---------------------cEEEEecCCCC
Confidence 455788889999999999999999998654322111110 00 1333333321
Q ss_pred -----------------------cchhhhhhhccCccceeEEeeccccCC----chhHHHHHHHHHh----cCCcEEEEE
Q 000728 868 -----------------------ESFTNLRSRGSGLCDIAILVVDIMHGL----EPQTIESLNLLKM----RNTEFIVAL 916 (1326)
Q Consensus 868 -----------------------e~F~~lr~rg~~~aDiaILVVDa~~Gv----~~QT~E~l~~l~~----~~vP~IVvI 916 (1326)
........+.++.+.+=+||||=-|.+ ..+-.++++.|+. .++|+|.|.
T Consensus 108 ~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vG 187 (302)
T PF05621_consen 108 DERRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVG 187 (302)
T ss_pred ChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEec
Confidence 112333445677788899999976643 2333445554443 478999887
Q ss_pred ec
Q 000728 917 NK 918 (1326)
Q Consensus 917 NK 918 (1326)
+.
T Consensus 188 t~ 189 (302)
T PF05621_consen 188 TR 189 (302)
T ss_pred cH
Confidence 65
No 480
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=94.76 E-value=0.14 Score=58.49 Aligned_cols=65 Identities=11% Similarity=0.030 Sum_probs=37.6
Q ss_pred CCCEEEEeCCCCcchhhhhhhccCccceeEEeeccccCCchhHHHHHHHHH----hcCCcE-EEEEecccc
Q 000728 856 VPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLK----MRNTEF-IVALNKVDR 921 (1326)
Q Consensus 856 ~~~I~IIDTPGhe~F~~lr~rg~~~aDiaILVVDa~~Gv~~QT~E~l~~l~----~~~vP~-IVvINKiD~ 921 (1326)
.+.+.||||||+.....+ ...+..+|.+|+++...---...+...+..+. ..++++ .|++|+++.
T Consensus 115 ~yD~ViID~~~~~~~~~~-~~~l~aAD~vlip~~~~~~sl~~~~~l~~~i~~~~~~~~l~~~gIV~N~~~~ 184 (268)
T TIGR01281 115 DYDVILFDVLGDVVCGGF-ATPLQYADYALVVAANDFDALFAANRIAASVQEKAKNYDVRLAGIIGNRSDA 184 (268)
T ss_pred cCCEEEEecCCccccCcc-ccchhhcCEEEEEecCchhHHHHHHHHHHHHHHHhhcCCCceEEEEEeCCCh
Confidence 468999999986432211 23467899999988653221112222322222 234554 578899874
No 481
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=94.75 E-value=0.031 Score=59.86 Aligned_cols=64 Identities=22% Similarity=0.150 Sum_probs=45.8
Q ss_pred CCEEEEeCCCCcchhhhhhhccCccceeEEeeccccCCchhHHHHHHHHHhcCC---cEEEEEeccccc
Q 000728 857 PGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNT---EFIVALNKVDRL 922 (1326)
Q Consensus 857 ~~I~IIDTPGhe~F~~lr~rg~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~v---P~IVvINKiD~~ 922 (1326)
+.+.|||||+..... ....+..+|.+|++++...--...+...+..+...+. .+.+++|+++..
T Consensus 95 yD~iiiD~~~~~~~~--~~~~l~~ad~viv~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~vv~N~v~~~ 161 (195)
T PF01656_consen 95 YDYIIIDTPPGLSDP--VRNALAAADYVIVPIEPDPSSIEGAERLIELLKRLGKKLKIIGVVINRVDPG 161 (195)
T ss_dssp SSEEEEEECSSSSHH--HHHHHHTSSEEEEEEESSHHHHHHHHHHHHHHHHHTHTEEEEEEEEEEETSC
T ss_pred ccceeecccccccHH--HHHHHHhCceeeeecCCcHHHHHHHHHHHHHHHHhccccceEEEEEeeeCCC
Confidence 789999999875554 4446678999999998865333444555566666663 457899999863
No 482
>cd04092 mtEFG2_II_like mtEFG2_C: C-terminus of mitochondrial Elongation factor G2 (mtEFG2)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. No clear phenotype has been found for mutants in the yeast homologue of mtEFG2, MEF2. There are two forms of mtEFG present in mammals (designated mtEFG1s and mtEFG2s) mtEFG1s are n
Probab=94.75 E-value=0.1 Score=49.05 Aligned_cols=79 Identities=20% Similarity=0.221 Sum_probs=50.8
Q ss_pred ceeEEEEEEEeCceeEEEEEEEeeEecCCCEEEEccCCCceeeeeeeccCCCCCceeeecceeeccccccc-ccceeeec
Q 000728 1018 QCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKA-AQGIKITA 1096 (1326)
Q Consensus 1018 ~~~VlEvk~~~G~Gtvi~giV~~G~Lr~GD~IVl~g~~g~~~~~IR~Ll~p~p~~e~rVk~~~~~~k~v~a-a~gv~i~~ 1096 (1326)
.+.|+.+.+.+..|....++|.+|+|+.||.|.++.... ..+|..|+.++.... .++.. ..|..+.+
T Consensus 2 ~a~VfK~~~d~~~g~i~~~Ri~sGtl~~g~~v~~~~~~~--~~~v~~l~~~~g~~~----------~~v~~~~aGdI~~i 69 (83)
T cd04092 2 CALAFKVVHDPQRGPLTFVRVYSGTLKRGSALYNTNTGK--KERISRLLQPFADQY----------QEIPSLSAGNIGVI 69 (83)
T ss_pred EEEEEecccCCCCCeEEEEEEecCEECCCCEEEECCCCC--EEEeeEEEEEECCCc----------eECCeeCCCCEEEE
Confidence 467888888888999999999999999999997664321 122333322211111 12222 24555566
Q ss_pred cccccccCCCce
Q 000728 1097 QGLEHAIAGTGL 1108 (1326)
Q Consensus 1097 ~gl~~~~aG~~~ 1108 (1326)
.|++....|+.+
T Consensus 70 ~gl~~~~~Gdtl 81 (83)
T cd04092 70 TGLKQTRTGDTL 81 (83)
T ss_pred ECCCCcccCCEE
Confidence 788888888765
No 483
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=94.73 E-value=0.014 Score=62.57 Aligned_cols=39 Identities=23% Similarity=0.244 Sum_probs=23.2
Q ss_pred CccceeEEeeccc---cCCchhHHHHHHHHHhcCCcEEEEEecc
Q 000728 879 GLCDIAILVVDIM---HGLEPQTIESLNLLKMRNTEFIVALNKV 919 (1326)
Q Consensus 879 ~~aDiaILVVDa~---~Gv~~QT~E~l~~l~~~~vP~IVvINKi 919 (1326)
..+| |+|||=- .-..+.-.+.+..+...+.|+|.++-+.
T Consensus 94 ~~~~--liviDEIG~mEl~~~~F~~~v~~~l~s~~~vi~vv~~~ 135 (168)
T PF03266_consen 94 SSSD--LIVIDEIGKMELKSPGFREAVEKLLDSNKPVIGVVHKR 135 (168)
T ss_dssp HCCH--EEEE---STTCCC-CHHHHHHHHHHCTTSEEEEE--SS
T ss_pred CCCC--EEEEeccchhhhcCHHHHHHHHHHHcCCCcEEEEEecC
Confidence 3445 7888843 3334556677777777889999999887
No 484
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=94.68 E-value=0.13 Score=56.80 Aligned_cols=66 Identities=9% Similarity=-0.034 Sum_probs=39.5
Q ss_pred CCCEEEEeCCCCcchhhhhh-hccCccceeEEeeccccCCc---hhHHHHHHHHHhc-CCc-EEEEEecccc
Q 000728 856 VPGLLVIDTPGHESFTNLRS-RGSGLCDIAILVVDIMHGLE---PQTIESLNLLKMR-NTE-FIVALNKVDR 921 (1326)
Q Consensus 856 ~~~I~IIDTPGhe~F~~lr~-rg~~~aDiaILVVDa~~Gv~---~QT~E~l~~l~~~-~vP-~IVvINKiD~ 921 (1326)
.+.+.||||||+.....+.. .....||.+|+|+....--. ......+..++.. +++ ..|++|+++.
T Consensus 116 ~yD~ilID~~g~~~~~~~~~~l~~~~ad~vliv~~p~~~sl~~~~~l~~~i~~~~~~~~~~~~gvv~N~~~~ 187 (212)
T cd02117 116 DLDVVLYDVLGDVVCGGFAMPIREGKADEIYIVTSGEFMALYAANNICKGIRKYAKSGGVRLGGLICNSRNT 187 (212)
T ss_pred CCCEEEEecCCCceecccccccccccCcEEEEEecccHHHHHHHHHHHHHHHHhCcccCCcEEEEEEeCCCC
Confidence 46899999998764333221 11247999999997753111 2233344444332 444 4489999984
No 485
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=94.67 E-value=0.088 Score=69.06 Aligned_cols=65 Identities=20% Similarity=0.168 Sum_probs=49.3
Q ss_pred CCCEEEEeCCCCcchhhhhhhccCccceeEEeeccccCCchhHHHHHHHHHhcCCcE-EEEEecccc
Q 000728 856 VPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEF-IVALNKVDR 921 (1326)
Q Consensus 856 ~~~I~IIDTPGhe~F~~lr~rg~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~vP~-IVvINKiD~ 921 (1326)
.+.++|||||+......... .+..||++|+|+....-........+..++..+.++ -||+|++|.
T Consensus 655 ~yD~IiID~pp~~~~~d~~~-l~~~~D~vl~v~~~~~~~~~~~~~~~~~l~~~~~~~~GvvlN~~~~ 720 (754)
T TIGR01005 655 YSDCVVVDVGTADPVRDMRA-AARLAIIMLLVTAYDRVVVECGRADAQGISRLNGEVTGVFLNMLDP 720 (754)
T ss_pred hCCEEEEcCCCcchhHHHHH-hhhhCCeEEEEEEeCceeHHHHHHHHHHHHhcCCceEEEEecCCCh
Confidence 46799999999866544433 355799999998876555566778888888878775 499999995
No 486
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=94.65 E-value=0.02 Score=67.06 Aligned_cols=28 Identities=18% Similarity=0.380 Sum_probs=24.7
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCccc
Q 000728 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQ 820 (1326)
Q Consensus 793 R~piV~IlGhvdaGKTTLLd~L~~~~v~ 820 (1326)
..+-|+|||.+++||||+||.|+...|.
T Consensus 306 kqISVGfiGYPNvGKSSiINTLR~KkVC 333 (572)
T KOG2423|consen 306 KQISVGFIGYPNVGKSSIINTLRKKKVC 333 (572)
T ss_pred cceeeeeecCCCCchHHHHHHHhhcccc
Confidence 4556999999999999999999988764
No 487
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=94.59 E-value=0.11 Score=58.16 Aligned_cols=62 Identities=16% Similarity=0.176 Sum_probs=39.5
Q ss_pred CCEEEEeCCCCcchhhhhhhccCccceeEEeeccccCCchhHHH-HHH-HHHh--cCCcEEEEEecccc
Q 000728 857 PGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIE-SLN-LLKM--RNTEFIVALNKVDR 921 (1326)
Q Consensus 857 ~~I~IIDTPGhe~F~~lr~rg~~~aDiaILVVDa~~Gv~~QT~E-~l~-~l~~--~~vP~IVvINKiD~ 921 (1326)
+.+.|||||+. +..+....+..+|.+|+|+..+.- ...... .+. ++.. ...++-|++|++|.
T Consensus 115 ~D~viiD~pp~--~~~~~~~~l~~ad~vii~~~~~~~-s~~~~~~~~~~l~~~~~~~~~~~iv~n~~~~ 180 (246)
T TIGR03371 115 RDWVLIDVPRG--PSPITRQALAAADLVLVVVNADAA-CYATLHQQALALFAGSGPRIGPHFLINQFDP 180 (246)
T ss_pred CCEEEEECCCC--chHHHHHHHHhCCeEEEEeCCCHH-HHHHHHHHHHHHhhcccccccceEEeeccCc
Confidence 37999999995 344555677899999999987531 111111 222 2221 23457789999985
No 488
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=94.53 E-value=0.11 Score=57.62 Aligned_cols=66 Identities=17% Similarity=-0.059 Sum_probs=48.7
Q ss_pred CCEEEEeCCCCcchhhhh-hhcc--CccceeEEeeccccCCchhHHHHHHHHHhcCCc-EEEEEeccccc
Q 000728 857 PGLLVIDTPGHESFTNLR-SRGS--GLCDIAILVVDIMHGLEPQTIESLNLLKMRNTE-FIVALNKVDRL 922 (1326)
Q Consensus 857 ~~I~IIDTPGhe~F~~lr-~rg~--~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~vP-~IVvINKiD~~ 922 (1326)
+.+.|||||......... ...+ ..+|.+|||+........++...+..++..+.+ .-+|+|++...
T Consensus 114 yD~IIiD~pp~~~~~~~l~~~~l~~~~~~~vllV~~p~~~s~~~~~~~l~~l~~~~~~~~glVlN~~~~~ 183 (217)
T cd02035 114 YDVIVFDTAPTGHTLRLLVRELLTDPERTSFRLVTLPEKLPLYETERAITELALYGIPVDAVVVNRVLPA 183 (217)
T ss_pred CCEEEECCCCchHHHHHHHHHHccCCCceEEEEEeCCCccHHHHHHHHHHHHHHCCCCCCEEEEeCCcCc
Confidence 789999999753333222 2222 246899999998877778888999999988876 46889998753
No 489
>PF05729 NACHT: NACHT domain
Probab=94.49 E-value=0.057 Score=55.91 Aligned_cols=22 Identities=27% Similarity=0.418 Sum_probs=19.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHcC
Q 000728 796 ICCIMGHVDTGKTKLLDCIRGT 817 (1326)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~~ 817 (1326)
+|.|.|.+|+|||||+.+|...
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~ 23 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQ 23 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHH
Confidence 5899999999999999998754
No 490
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=94.48 E-value=0.11 Score=59.95 Aligned_cols=22 Identities=32% Similarity=0.474 Sum_probs=19.8
Q ss_pred CEEEEEeCCCCCHHHHHHHHHc
Q 000728 795 PICCIMGHVDTGKTKLLDCIRG 816 (1326)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~ 816 (1326)
++|+|+|..|+|||||+.+|..
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~ 23 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVD 23 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999963
No 491
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=94.46 E-value=0.067 Score=56.83 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=20.7
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcC
Q 000728 795 PICCIMGHVDTGKTKLLDCIRGT 817 (1326)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~~~ 817 (1326)
++|+|+|+.|+|||||+.+|...
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~ 24 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPA 24 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999753
No 492
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=94.43 E-value=0.16 Score=56.25 Aligned_cols=100 Identities=21% Similarity=0.230 Sum_probs=51.4
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCcccccccCceeeeeeeeEeccccc--hhhhhhhccc----cccCCCCEEEEeCC
Q 000728 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENI--RERTRELKAN----ATLKVPGLLVIDTP 865 (1326)
Q Consensus 792 ~R~piV~IlGhvdaGKTTLLd~L~~~~v~~ge~gGITq~iga~~~~~~~~--~~~~~~v~~~----~~~~~~~I~IIDTP 865 (1326)
.+.-++.|.|.+|+|||+|+-.|.......+..+|. +.+..|+..+.. ..+...+... ...-...|.+++..
T Consensus 17 ~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~--~~~v~yi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~ 94 (226)
T cd01393 17 PTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGL--EGKVVYIDTEGAFRPERLVQLAVRFGLDPEEVLDNIYVARPY 94 (226)
T ss_pred cCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCC--cceEEEEecCCCCCHHHHHHHHHHhccchhhhhccEEEEeCC
Confidence 345579999999999999999987543333333332 122334433321 1111111000 00002347777765
Q ss_pred CCcchhhhhhhc---cCccceeEEeeccccC
Q 000728 866 GHESFTNLRSRG---SGLCDIAILVVDIMHG 893 (1326)
Q Consensus 866 Ghe~F~~lr~rg---~~~aDiaILVVDa~~G 893 (1326)
....+....... .....+-++|||.-..
T Consensus 95 ~~~~~~~~l~~~~~~~~~~~~~lvVIDsis~ 125 (226)
T cd01393 95 NGEQQLEIVEELERIMSSGRVDLVVVDSVAA 125 (226)
T ss_pred CHHHHHHHHHHHHHHhhcCCeeEEEEcCcch
Confidence 544443333222 2245677899998543
No 493
>cd03692 mtIF2_IVc mtIF2_IVc: this family represents the C2 subdomain of domain IV of mitochondrial translation initiation factor 2 (mtIF2) which adopts a beta-barrel fold displaying a high degree of structural similarity with domain II of the translation elongation factor EF-Tu. The C-terminal part of mtIF2 contains the entire fMet-tRNAfmet binding site of IF-2 and is resistant to proteolysis. This C-terminal portion consists of two domains, IF2 C1 and IF2 C2. IF2 C2 been shown to contain all molecular determinants necessary and sufficient for the recognition and binding of fMet-tRNAfMet. Like IF2 from certain prokaryotes such as Thermus thermophilus, mtIF2lacks domain II which is thought to be involved in binding of E.coli IF-2 to 30S subunits.
Probab=94.40 E-value=0.24 Score=46.90 Aligned_cols=77 Identities=16% Similarity=0.148 Sum_probs=54.3
Q ss_pred eeEEEEEEEeCceeEEEEEEEeeEecCCCEEEEccCCCceeeeeeeccCCCCCceeeecceeecccccc---cccceeee
Q 000728 1019 CTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIK---AAQGIKIT 1095 (1326)
Q Consensus 1019 ~~VlEvk~~~G~Gtvi~giV~~G~Lr~GD~IVl~g~~g~~~~~IR~Ll~p~p~~e~rVk~~~~~~k~v~---aa~gv~i~ 1095 (1326)
+.|..+|.+.+.|+++.++|.+|+|++|+.+.+++.+..+ -...|.+++.|++.+. +...+.|.
T Consensus 3 ~~V~~vf~~~~~g~vag~kV~~G~l~~g~~v~vlr~~~~~-------------~~g~i~sl~~~~~~v~~a~~G~ecgi~ 69 (84)
T cd03692 3 AEVRAVFKISKVGNIAGCYVTDGKIKRNAKVRVLRNGEVI-------------YEGKISSLKRFKDDVKEVKKGYECGIT 69 (84)
T ss_pred EEEEEEEECCCCcEEEEEEEEECEEeCCCEEEEEcCCCEE-------------EEEEEEEEEEcCcccCEECCCCEEEEE
Confidence 5678888888889999999999999999999887653211 1224455555555554 34457777
Q ss_pred ccccccccCCCce
Q 000728 1096 AQGLEHAIAGTGL 1108 (1326)
Q Consensus 1096 ~~gl~~~~aG~~~ 1108 (1326)
+.+++....|+-+
T Consensus 70 l~~~~d~~~Gdvi 82 (84)
T cd03692 70 LENFNDIKVGDII 82 (84)
T ss_pred EeCcccCCCCCEE
Confidence 7888766666644
No 494
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=94.39 E-value=0.2 Score=61.47 Aligned_cols=25 Identities=24% Similarity=0.198 Sum_probs=22.0
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcC
Q 000728 793 RSPICCIMGHVDTGKTKLLDCIRGT 817 (1326)
Q Consensus 793 R~piV~IlGhvdaGKTTLLd~L~~~ 817 (1326)
++.+|+|+|.+|+||||+...|...
T Consensus 254 ~p~vil~~G~~G~GKSt~a~~LA~~ 278 (475)
T PRK12337 254 RPLHVLIGGVSGVGKSVLASALAYR 278 (475)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5778999999999999999999643
No 495
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=94.34 E-value=0.071 Score=55.39 Aligned_cols=25 Identities=28% Similarity=0.396 Sum_probs=21.7
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCc
Q 000728 794 SPICCIMGHVDTGKTKLLDCIRGTN 818 (1326)
Q Consensus 794 ~piV~IlGhvdaGKTTLLd~L~~~~ 818 (1326)
.-+++|+|+.|+|||||++.|.+..
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCC
Confidence 3468999999999999999998753
No 496
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=94.34 E-value=0.13 Score=55.00 Aligned_cols=24 Identities=21% Similarity=0.113 Sum_probs=20.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCcc
Q 000728 796 ICCIMGHVDTGKTKLLDCIRGTNV 819 (1326)
Q Consensus 796 iV~IlGhvdaGKTTLLd~L~~~~v 819 (1326)
+++|.|.+|+|||+|.-+|.....
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~ 24 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGL 24 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH
Confidence 378999999999999999876543
No 497
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=94.27 E-value=0.17 Score=57.73 Aligned_cols=64 Identities=13% Similarity=0.069 Sum_probs=37.8
Q ss_pred CCCEEEEeCCCCcchhhhhhhccCccceeEEeeccccCCc---hhHHHHHHHH-HhcCCcEE-EEEeccc
Q 000728 856 VPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLE---PQTIESLNLL-KMRNTEFI-VALNKVD 920 (1326)
Q Consensus 856 ~~~I~IIDTPGhe~F~~lr~rg~~~aDiaILVVDa~~Gv~---~QT~E~l~~l-~~~~vP~I-VvINKiD 920 (1326)
.+.+.||||||+..... ....+..+|.+|+++....--. .++...+... ...+++++ |++|+.+
T Consensus 117 ~yD~viIDt~g~~~~~~-~~~~l~~AD~viip~~~~~~sl~~~~~~~~~i~~~~~~~~l~i~giv~N~~~ 185 (270)
T PRK13185 117 DYDVILFDVLGDVVCGG-FAAPLQYADYALIVTANDFDSIFAANRIAAAIQAKAKNYKVRLAGVIANRSA 185 (270)
T ss_pred cCCEEEEecCCCcccCc-ccchhhhCcEEEEEecCchhhHHHHHHHHHHHHhhhhccCCCceEEEEeccC
Confidence 46799999998643222 2224678999999987643211 1223333322 23456654 8889966
No 498
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=94.23 E-value=0.095 Score=59.02 Aligned_cols=29 Identities=17% Similarity=0.161 Sum_probs=23.6
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCccc
Q 000728 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQ 820 (1326)
Q Consensus 792 ~R~piV~IlGhvdaGKTTLLd~L~~~~v~ 820 (1326)
.+.-+++|.|++|+|||+|..+++.....
T Consensus 19 ~~gs~~lI~G~pGsGKT~la~~~l~~~~~ 47 (237)
T TIGR03877 19 PERNVVLLSGGPGTGKSIFSQQFLWNGLQ 47 (237)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 45567999999999999999998765443
No 499
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=94.10 E-value=0.047 Score=48.89 Aligned_cols=21 Identities=38% Similarity=0.616 Sum_probs=0.0
Q ss_pred CEEEEEeCCCCCHHHHHHHHH
Q 000728 795 PICCIMGHVDTGKTKLLDCIR 815 (1326)
Q Consensus 795 piV~IlGhvdaGKTTLLd~L~ 815 (1326)
++.+|.|+.|+||||||++|.
T Consensus 24 ~~tli~G~nGsGKSTllDAi~ 44 (62)
T PF13555_consen 24 DVTLITGPNGSGKSTLLDAIQ 44 (62)
T ss_pred cEEEEECCCCCCHHHHHHHHH
No 500
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=94.02 E-value=0.19 Score=56.94 Aligned_cols=119 Identities=20% Similarity=0.227 Sum_probs=0.0
Q ss_pred CEEEEEeC-CCCCHHHHHHHHHcCccccccc--------------------------------------CceeeeeeeeE
Q 000728 795 PICCIMGH-VDTGKTKLLDCIRGTNVQEGEA--------------------------------------GGITQQIGATY 835 (1326)
Q Consensus 795 piV~IlGh-vdaGKTTLLd~L~~~~v~~ge~--------------------------------------gGITq~iga~~ 835 (1326)
++|+|+|. .|+|||||.-.|...-...|+. .+....-|..+
T Consensus 2 ~~iai~s~kGGvG~TTltAnLA~aL~~~G~~VlaID~dpqN~Lrlhfg~~~~~~~G~a~a~l~~~~W~~~~~~~~~g~~~ 81 (243)
T PF06564_consen 2 KVIAIVSPKGGVGKTTLTANLAWALARLGESVLAIDLDPQNLLRLHFGLPLDDRDGWARALLDGADWQQAAYRYSDGVDF 81 (243)
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCcHHHHHHhcCCCCcccccHHHHHhCCCCHHHHhhccCCCCEE
Q ss_pred eccccchhhhhh---------------hccccccCCCCEEEEeCCCCcchhhhhhhccCccceeEEeeccccCCchhHHH
Q 000728 836 FPAENIRERTRE---------------LKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIE 900 (1326)
Q Consensus 836 ~~~~~~~~~~~~---------------v~~~~~~~~~~I~IIDTPGhe~F~~lr~rg~~~aDiaILVVDa~~Gv~~QT~E 900 (1326)
+|+......... +..-.....+.++|||||-+ .+......+..+|++|+|+-++- ..-
T Consensus 82 LPfG~l~~~~~~~~~~l~~~~~~l~~~l~~l~~~~~~~~iliD~P~g--~~~~~~~al~~aD~vL~V~~~Da-----~s~ 154 (243)
T PF06564_consen 82 LPFGQLTEAEREAFEQLAQDPQWLARALAALKALGPYDWILIDTPPG--PSPYTRQALAAADLVLVVVNPDA-----ASH 154 (243)
T ss_pred EcCCCCCHHHHHHHHHhhcCHHHHHHHHHHHhccCCCCEEEEeCCCC--CcHHHHHHHHhCCeEEEEeCCCH-----HHH
Q ss_pred HHHHHHhcCCcEEEEEeccc
Q 000728 901 SLNLLKMRNTEFIVALNKVD 920 (1326)
Q Consensus 901 ~l~~l~~~~vP~IVvINKiD 920 (1326)
...+-+.......++||+.|
T Consensus 155 ~~L~q~~l~~~~~~liNq~~ 174 (243)
T PF06564_consen 155 ARLHQRALPAGHRFLINQYD 174 (243)
T ss_pred HHHHHhcccCCcEEEEeccC
Done!