Query 000728
Match_columns 1326
No_of_seqs 640 out of 4514
Neff 6.1
Searched_HMMs 29240
Date Tue Mar 26 18:11:15 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000728.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_497-501//hhsearch_pdb/000728hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1g7s_A Translation initiation 1.0 1 1 748.2 45.4 519 791-1323 2-525 (594)
2 1zo1_I IF2, translation initia 1.0 1 1 647.4 12.3 449 792-1323 2-472 (501)
3 3izy_P Translation initiation 1.0 1 1 627.4 13.9 451 792-1323 2-514 (537)
4 1wb1_A Translation elongation 1.0 1 1 282.9 16.0 258 787-1110 12-280 (482)
5 3mca_A HBS1, elongation factor 1.0 1 1 282.6 18.0 256 793-1114 176-489 (592)
6 3vqt_A RF-3, peptide chain rel 1.0 1 1 282.1 19.5 296 787-1109 26-397 (548)
7 3j2k_7 ERF3, eukaryotic polype 1.0 1 1 279.1 26.2 264 792-1115 15-328 (439)
8 3j25_A Tetracycline resistance 1.0 1 1 278.8 5.7 251 791-1055 1-286 (638)
9 4fn5_A EF-G 1, elongation fact 1.0 1 1 276.6 19.9 290 790-1109 11-401 (709)
10 3avx_A Elongation factor TS, e 1.0 1 1 275.7 21.2 259 793-1114 295-581 (1289)
No 1
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=1.00 E-value=1 Score=748.21 Aligned_cols=519 Identities=38% Similarity=0.671 Sum_probs=460.2
Q ss_pred CCCCCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCHHHHHHHCC--CCCCCCCCEEEEECCCCC
Q ss_conf 789989999909999988999999849643455575036520468114320002233002--334577989999299996
Q 000728 791 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKA--NATLKVPGLLVIDTPGHE 868 (1326)
Q Consensus 791 ~~R~piV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~~~e~~~~~t~~v~~--~~~~~~~~i~iIDTPGHe 868 (1326)
++|+|+|+|+||+|||||||+++|+++.+..++.+|||++++++++++..+......+.. ...+..+.|+|||||||+
T Consensus 2 ~~r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe 81 (594)
T 1g7s_A 2 KIRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHE 81 (594)
T ss_dssp EECCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTS
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEECCCCEEEEEECHHHHHCCCCCCCCCCCCCCCCEEEEECCCCH
T ss_conf 98881999999999739999999966667656678600213719986201121024323553222554888999897937
Q ss_pred CHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 21456640157556148962313588566799999998139937999720355467655788038999997649999999
Q 000728 869 SFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEF 948 (1326)
Q Consensus 869 ~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~vPiIVviNKiD~~~~w~~~~~a~i~~~l~~q~~~~~~ef 948 (1326)
+|+.++.++++.||++|||||+++|+++||+++|.++...++|+|||+||||+...|....+.++...+..+...++..|
T Consensus 82 ~F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~v~~~~ 161 (594)
T 1g7s_A 82 AFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKL 161 (594)
T ss_dssp CCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 89999997775399999999799885476799999999749809999625666433333347746899987678888877
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHH--HCCCCCCEEEEEEEE
Q ss_conf 898999999999807831232013588962149847876799902589999999888686531--014655116999999
Q 000728 949 NMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKL--TFRNELQCTVLEVKV 1026 (1326)
Q Consensus 949 ~~~i~~I~~~L~e~Gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~L~~~~q~~l~e~l--~~~~~~~~~VlEvk~ 1026 (1326)
...+..+...|.+.|+..+.|+....++..++++|+||++|.||.+|+.+|..+++.++...+ ....++++.|++++.
T Consensus 162 ~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~~~~~~l~~~~~~p~~~~V~~~~~ 241 (594)
T 1g7s_A 162 DTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQYLREQLKIEEDSPARGTILEVKE 241 (594)
T ss_dssp HHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHHCSGGGEECTTSBCEEEEEEEEE
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHCCCCCHHHHCCCCCCCCEEEEEEEEE
T ss_conf 77899999999875861678998875167622898764678882557899975340000234124557885048999998
Q ss_pred EECCEEEEEEEEEEEEECCCCEEEECCCCCCEEEEEEECCCCCCCCEEE-ECCEEECCCCCCCCCCEEEECCCCCCCCCC
Q ss_conf 8085159999998107627988988167896046554303899882001-111110010102235516601565323579
Q 000728 1027 IEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELR-VKGTYLHHKQIKAAQGIKITAQGLEHAIAG 1105 (1326)
Q Consensus 1027 ~~G~G~vi~~iV~~G~Lk~GD~IVl~g~~g~~~~~Ir~Ll~p~p~~e~r-Vk~~~~~~keV~aa~gv~i~~~gl~~~~aG 1105 (1326)
++|.|++++++|.+|+|+.||.|++++..++..++|++|++|.|+.++| ..+.+...+++.+++|+.+++.||+.+.+|
T Consensus 242 d~g~G~v~~~rV~~G~Lk~Gd~v~~~~~~~~~~~rV~~i~~~~~~~elr~~~~~~~~v~ea~~~aG~~v~~~~l~~~~~G 321 (594)
T 1g7s_A 242 ETGLGMTIDAVIYDGILRKDDTIAMMTSKDVISTRIRSLLKPRPLEEMRESRKKFQKVDEVVAAAGIKIVAPGIDDVMAG 321 (594)
T ss_dssp ETTEEEEEEEEEEESEEETTCEEEEEBSSSEEEEECCEEEEECCCC----CCCSEEECSEEESSEEEEEECSSCTTBCTT
T ss_pred ECCCEEEEEEEEEECEEEECCEEEECCCCCCEEEEEEEEEECCCCCHHHHCCCCCEECCEECCCCCCEEEECCCCCCCCC
T ss_conf 07957999999962879619999988889845689869980266213331357856813885799809997466788999
Q ss_pred CCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHH
Q ss_conf 95388299521999999999989999763101488459970885669999987324980222778531755411288885
Q 000728 1106 TGLYVVGPDDDLEDVKEEAMEDMKSVMSRIDKSGEGVCVQASTLGSLEALLEFLKSDAVKIPVSGISIGPVHKKDVMRAS 1185 (1326)
Q Consensus 1106 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~vkadt~GSlEAl~~~L~~~~v~i~V~~~~vG~Vt~~DV~~As 1185 (1326)
+.|.++.++ +.++..++.++.++ ++.....||||||||+||||||+++|.. .+|||++++||+||++||++|+
T Consensus 322 d~l~~~~~~---~~~~~~~~~~~~~~--~~~~~~~~~~vkad~~gs~eal~~~l~~--~~~~v~~~~vg~i~~~dv~~a~ 394 (594)
T 1g7s_A 322 SPLRVVTDP---EKVREEILSEIEDI--KIDTDEAGVVVKADTLGSLEAVVKILRD--MYVPIKVADIGDVSRRDVVNAG 394 (594)
T ss_dssp CEEEECSSH---HHHHHHHHHHHHTT--SCBCSSSCCEEEESSHHHHHHHHHHHHH--TTCCCSEEEESSBCHHHHHHHH
T ss_pred CEEEECCCH---HHHHHHHHHHHHHC--CCCCCCCCEEEEECCCCCHHHHHHHHHH--CCCCEEECCCCCCCHHHHHHHH
T ss_conf 988815998---99999999988743--3544446479983787889999999984--7875795146888788999987
Q ss_pred HHCCCCCCCCEEEEECCCCCHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCEECCCEEEEECCCCC
Q ss_conf 21001375319998189999889999998098199902376899999999822246777764042000312455045323
Q 000728 1186 VMLEKKKEYATILAFDVKVTPEARELAEELGVKIFIADIIYHLFDQFTAYINNLKEEKKREAADEAVFPCVLKILPNCVF 1265 (1326)
Q Consensus 1186 ~~~~~~~~~a~IlaFnVkv~~~a~~~A~~~gV~I~~~~IIY~L~d~~~~~~~~l~~~~~~e~~~~av~p~~l~i~~~~vf 1265 (1326)
+|+++++.||+||||||+++++|+.+|++.||+||+|+|||||+|+|++||.+++++.+++..+.++|||.++|++++||
T Consensus 395 ~~~~~~~~~a~i~~fnv~~~~~~~~~a~~~~v~i~~~~iiy~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~f 474 (594)
T 1g7s_A 395 IALQEDRVYGAIIAFNVKVIPSAAQELKNSDIKLFQGNVIYRLMEEYEEWVRGIEEEKKKKWMEAIIKPASIRLIPKLVF 474 (594)
T ss_dssp HHHTTCTTSCEEEEESCCBCHHHHHHTSSSSSEEEEESCHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCEEEEEEEEEEE
T ss_pred HHHCCCCCCCEEEEECCCCCHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHHCCCHHHHHHHHEEEEEEEEEEECCEEE
T ss_conf 43113767878999578689889999997498699877799999999998653045155544324420289999311389
Q ss_pred CCCCCEEEEEEEEEEEEEECCEEEEEEECCCEEEEEEEEEEEEEEECCCCCCCCCCCC
Q ss_conf 7889869989996547841890679970599099998530044310543347334589
Q 000728 1266 NKKDPIVLGVDVVEGIAKVRMLELQFVFPKGILLILAELRLLKITINPLILPRKARKQ 1323 (1326)
Q Consensus 1266 ~~k~p~IaG~~V~~G~lk~gt~i~~~v~r~~~~~~~g~i~sl~~~~~~~~~~~~~~~~ 1323 (1326)
+.++|+||||+|++|+|++|+++| + |+|. |.|.|.||+|.+++ +..+++|+
T Consensus 475 ~~~~~~i~g~~v~~G~~~~~~~~~--~-~~~~--~~g~i~sl~~~k~~--v~~~~~g~ 525 (594)
T 1g7s_A 475 RQSKPAIGGVEVLTGVIRQGYPLM--N-DDGE--TVGTVESMQDKGEN--LKSASRGQ 525 (594)
T ss_dssp ECSSSEEEEEEEEEEEEETTCEEE--C-TTSC--EEEEEEEEEETTEE--ESEEETTC
T ss_pred CCCCCEEEEEEEECCEEECCCEEE--E-CCCC--EEEEEEHHCCCCCC--CCCCCCCC
T ss_conf 279986999999618895498599--6-6993--79988513215842--25127897
No 2
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=1.00 E-value=1 Score=647.39 Aligned_cols=449 Identities=28% Similarity=0.416 Sum_probs=362.5
Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCHHHHHHHCCCCCCCCCCEEEEECCCCCCHH
Q ss_conf 89989999909999988999999849643455575036520468114320002233002334577989999299996214
Q 000728 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 871 (1326)
Q Consensus 792 ~R~piV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~~~e~~~~~t~~v~~~~~~~~~~i~iIDTPGHe~F~ 871 (1326)
.|+|+|+||||+|||||||+++|+.+.+..++.+|||++++.+++.+.. ..|+|||||||+.|.
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~----------------~~i~~iDTPGhe~f~ 65 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETEN----------------GMITFLDTPGHAAFT 65 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTS----------------SCCCEECCCTTTCCT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEEEECC----------------EEEEEEECCCCHHHH
T ss_conf 9870999999999988999999976887535689703767799999899----------------899999899857889
Q ss_pred HHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 56640157556148962313588566799999998139937999720355467655788038999997649999999898
Q 000728 872 NLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1326)
Q Consensus 872 ~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~vPiIVviNKiD~~~~w~~~~~a~i~~~l~~q~~~~~~ef~~~ 951 (1326)
.++.++++.||++|||||+++|+++||+++|.++...++|+||++||+|+.. |...
T Consensus 66 ~~~~~~~~~aD~aILVVda~~g~~~qT~e~l~~~~~~~vPiIVviNKiDl~~-~~~~----------------------- 121 (501)
T 1zo1_I 66 SMRARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVPVVVAVNKIDKPE-ADPD----------------------- 121 (501)
T ss_dssp TSBCSSSBSCSSEEEEEETTTBSCTTTHHHHHHHHHTTCCEEEEEECSSSST-TCCC-----------------------
T ss_pred HHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCC-CCHH-----------------------
T ss_conf 9999887538899999425667627789999988862964999997326543-5777-----------------------
Q ss_pred HHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCE
Q ss_conf 99999999980783123201358896214984787679990258999999988868653101465511699999980851
Q 000728 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQCTVLEVKVIEGHG 1031 (1326)
Q Consensus 952 i~~I~~~L~e~Gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~L~~~~q~~l~e~l~~~~~~~~~VlEvk~~~G~G 1031 (1326)
.+...+...++.. ..|++.++++++||++|.||.+|+.+|.... ..+.....+..++.++|++++...|.|
T Consensus 122 --~v~~~l~~~~~~~------~~~~~~~~~v~vSAktG~gI~eLle~I~~~~-~~~~~~~~~~~~~~~~V~e~~~d~g~G 192 (501)
T 1zo1_I 122 --RVKNELSQYGILP------EEWGGESQFVHVSAKAGTGIDELLDAILLQA-EVLELKAVRKGMASGAVIESFLDKGRG 192 (501)
T ss_dssp --CTTCCCCCCCCCT------TCCSSSCEEEECCTTTCTTCTTHHHHTTTTC-CCSTTTSCCCSBCEEEEEEEEECSSSS
T ss_pred --HHHHHHHHHHHHH------HHHCCCCCEEEEEEEECCCCCHHHHHHHHHH-HHHCCCCCCCCCCCCCEEEEEEECCCE
T ss_conf --8889998721028------8727876079986430357403555556555-432101223565543159999727928
Q ss_pred EEEEEEEEEEEECCCCEEEECCCCCCEEEEEEECCCCCCCCEEEECCEEECCCCCCCCCCEEEECCCCCC-CCCCCCEEE
Q ss_conf 5999999810762798898816789604655430389988200111111001010223551660156532-357995388
Q 000728 1032 TTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAAQGIKITAQGLEH-AIAGTGLYV 1110 (1326)
Q Consensus 1032 ~vi~~iV~~G~Lk~GD~IVl~g~~g~~~~~Ir~Ll~p~p~~e~rVk~~~~~~keV~aa~gv~i~~~gl~~-~~aG~~~~v 1110 (1326)
++++++|.+|+|+.||.++++ +..++||+|++++... .+++. ++..+.+.||.. +.+|+.+++
T Consensus 193 ~v~~~~V~~Gtlk~Gd~v~~g----~~~~kVr~i~~~~g~~----------v~~a~--~g~~V~i~gl~~~~~~Gd~~~~ 256 (501)
T 1zo1_I 193 PVATVLVREGTLHKGDIVLCG----FEYGRVRAMRNELGQE----------VLEAG--PSIPVEILGLSGVPAAGDEVTV 256 (501)
T ss_dssp EEEEEEEEESBCCTTCEEEEE----BSSCEEEEECCTTTTS----------EEEEC--CSSCSSSEEECSCCCTTEEEEE
T ss_pred EEEEEEEEEEEEECCCEEEEC----CCEEEEEEEEECCCCC----------CCEEC--CCCCEEEECCCCCCCCCCEEEE
T ss_conf 999999985699059889976----5133999998048986----------75864--5772799678798989998994
Q ss_pred CCCCCHHHH-------------HHHHHHHHHHHHHHHHH---CCCCCEEEECCCCCCHHHHHHHHC---CCCCEEEEEEE
Q ss_conf 299521999-------------99999998999976310---148845997088566999998732---49802227785
Q 000728 1111 VGPDDDLED-------------VKEEAMEDMKSVMSRID---KSGEGVCVQASTLGSLEALLEFLK---SDAVKIPVSGI 1171 (1326)
Q Consensus 1111 ~~~~~~~~~-------------~~~~~~~~~~~~~~~~~---~~~~gv~vkadt~GSlEAl~~~L~---~~~v~i~V~~~ 1171 (1326)
+.++..++. +....+..+.++++++. ....|+||||||+||||||+.+|. +++++++|+++
T Consensus 257 ~~~~~~a~~~~~~r~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ivkad~~gs~ea~~~~l~~~~~~~~~~~v~~~ 336 (501)
T 1zo1_I 257 VRDEKKAREVALYRQGKFREVKLARQQKSKLENMFANMTEGEVHEVNIVLKADVQGSVEAISDSLLKLSTDEVKVKIIGS 336 (501)
T ss_dssp ECSSCTTBCSSCBTTCCCCSHHHHHHHHHHHSSTTTSCSSCCCCCCCCBCCCSCHHHHHHHHHHHTTTTCCCSBCCCCCS
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEE
T ss_conf 28878988999999999999987665330699998666316874577999978867899999999861645630479981
Q ss_pred ECCCCCCCHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHH-HHCC
Q ss_conf 317554112888852100137531999818999988999999809819990237689999999982224677776-4042
Q 000728 1172 SIGPVHKKDVMRASVMLEKKKEYATILAFDVKVTPEARELAEELGVKIFIADIIYHLFDQFTAYINNLKEEKKRE-AADE 1250 (1326)
Q Consensus 1172 ~vG~Vt~~DV~~As~~~~~~~~~a~IlaFnVkv~~~a~~~A~~~gV~I~~~~IIY~L~d~~~~~~~~l~~~~~~e-~~~~ 1250 (1326)
+||+||++||++|++ +||+||||||++++.++.+|++.||+||+|+|||||||+|+++|.+++++...+ ..|.
T Consensus 337 ~vG~i~~~Dv~~a~~------~~a~i~~fnv~~~~~~~~~a~~~~v~i~~~~iiy~l~~~~~~~~~~~~~~~~~~~~~g~ 410 (501)
T 1zo1_I 337 GVGGITETDATLAAA------SNAILVGFNVRADASARKVIEAESLDLRYYSVIYNLIDEVKAAMSGMLSPELKQQIIGL 410 (501)
T ss_dssp SSSSSHHHHSTTTCG------GGCCEEECSSCCCHHHHTTSCSSSSCEEESCCCSHHHHHTHHHHTTTSSTTCCCCCCCC
T ss_pred CCCCCCHHHHHHHHH------CCCEEEEECCCCCHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHHCCCEEEEEEEEE
T ss_conf 368889899998773------18879995588997899999974987999077999999999998764184256420058
Q ss_pred EECCCEEEEECCCCCCC-CCCEEEEEEEEEEEEEECCEEEEEEECCCEEEEEEEEEEEEEEECCCCCCCCCCCC
Q ss_conf 00031245504532378-89869989996547841890679970599099998530044310543347334589
Q 000728 1251 AVFPCVLKILPNCVFNK-KDPIVLGVDVVEGIAKVRMLELQFVFPKGILLILAELRLLKITINPLILPRKARKQ 1323 (1326)
Q Consensus 1251 av~p~~l~i~~~~vf~~-k~p~IaG~~V~~G~lk~gt~i~~~v~r~~~~~~~g~i~sl~~~~~~~~~~~~~~~~ 1323 (1326)
|. |.. +|+. +.|+||||+|++|+|++|+++ +++|+|.++|.|+|.||+|.+++|. .+++|+
T Consensus 411 a~------v~~--~f~~~~~~~iaG~~v~~G~~~~~~~~--~~~r~~~~i~~g~i~sl~~~k~~v~--e~~~g~ 472 (501)
T 1zo1_I 411 AE------VRD--VFKSPKFGAIAGCMVTEGVVKRHNPI--RVLRDNVVIYEGELESLRRFKDDVN--EVRNGM 472 (501)
T ss_dssp EE------EEE--CSSCCCSSCEEEEEEEEEEEETTCEE--ECCSSSCCCEEEEBCCEEETTEEES--EEETTC
T ss_pred EE------EEE--EEECCCCCEEEEEEEEECEEECCCEE--EEEECCEEEEEEEEEHHCCCCCCCC--EECCCC
T ss_conf 99------999--99659998899999970889639859--9970880899878811343686216--988998
No 3
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=1.00 E-value=1 Score=627.38 Aligned_cols=451 Identities=27% Similarity=0.362 Sum_probs=358.3
Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCHHHHHHHCCCCCCCCCCEEEEECCCCCCHH
Q ss_conf 89989999909999988999999849643455575036520468114320002233002334577989999299996214
Q 000728 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 871 (1326)
Q Consensus 792 ~R~piV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~~~e~~~~~t~~v~~~~~~~~~~i~iIDTPGHe~F~ 871 (1326)
.|+|+|+||||+|||||||+++|++..+...+.+|+|++++.+.+.+.. ...|+|||||||+.|.
T Consensus 2 ~r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~---------------g~~i~~iDTPGhe~f~ 66 (537)
T 3izy_P 2 PRSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPS---------------GEKITFLDTPGHAAFS 66 (537)
T ss_dssp CCCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSC---------------SSCCBCEECSSSCCTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEEEECC---------------CCEEEEEECCCHHHHH
T ss_conf 9899999999989998999999958876620179666887699999489---------------9789999898848999
Q ss_pred HHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 56640157556148962313588566799999998139937999720355467655788038999997649999999898
Q 000728 872 NLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1326)
Q Consensus 872 ~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~vPiIVviNKiD~~~~w~~~~~a~i~~~l~~q~~~~~~ef~~~ 951 (1326)
.++.++++.+|++|||||+++|+++||.++|.++...++|+||++||+|++.. ...
T Consensus 67 ~~~~~~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~~~vPiIVViNKiDl~~~-~~~----------------------- 122 (537)
T 3izy_P 67 AMRARGTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVPIVLAINKCDKAEA-DPE----------------------- 122 (537)
T ss_dssp TSBBSSSBSBSSCEEECBSSSCCCHHHHHHHHHHHTTTCCEEECCBSGGGTTT-SCC-----------------------
T ss_pred HHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCC-CHH-----------------------
T ss_conf 99999871198899999799986477899999998759968999943432334-258-----------------------
Q ss_pred HHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCE
Q ss_conf 99999999980783123201358896214984787679990258999999988868653101465511699999980851
Q 000728 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQCTVLEVKVIEGHG 1031 (1326)
Q Consensus 952 i~~I~~~L~e~Gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~L~~~~q~~l~e~l~~~~~~~~~VlEvk~~~G~G 1031 (1326)
.+...+...++... .|+..++++++||++|.||.+|+.+|..+++. +.....+..+++++|++++...|.|
T Consensus 123 --~v~~~l~~~~~~~e------~~~~~~~iv~vSAktG~GI~eLle~I~~l~~~-~~~~~~~~~~~~~~V~e~~~~~g~G 193 (537)
T 3izy_P 123 --KVKKELLAYDVVCE------DYGGDVQAVHVSALTGENMMALAEATIALAEM-LELKADPTGAVEGTVIESFTDKGRG 193 (537)
T ss_dssp --SSSSHHHHTTSCCC------CSSSSEEECCCCSSSSCSSHHHHHHHHHHHTT-CCCCCCSSSSEEEEEEEECCCTTCC
T ss_pred --HHHHHHHHHHHHHH------HCCCCCEEEEEECCCCCCCHHHHHHHHHHHHC-CCCCCCCCCCCCEEEEEEEEECCCC
T ss_conf --89999986301377------61898339999788799950478999986530-3555788788611689999848975
Q ss_pred EEEEEEEEEEEECCCCEEEECCCCCCEEEEEEECCCCCCCCEEEECCEEECCCCCCC-CCCEEEECCCCCC-CCCCCCEE
Q ss_conf 599999981076279889881678960465543038998820011111100101022-3551660156532-35799538
Q 000728 1032 TTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKA-AQGIKITAQGLEH-AIAGTGLY 1109 (1326)
Q Consensus 1032 ~vi~~iV~~G~Lk~GD~IVl~g~~g~~~~~Ir~Ll~p~p~~e~rVk~~~~~~keV~a-a~gv~i~~~gl~~-~~aG~~~~ 1109 (1326)
++++++|.+|+|+.||.++ + |..+++||.|+++.. ..+.. .+|..+.+.|++. +.+|+.|.
T Consensus 194 ~V~~g~V~~G~l~~Gd~v~-~---g~~~~kVr~i~~~~g-------------~~v~~A~~G~~V~i~g~~~~~~~Gd~l~ 256 (537)
T 3izy_P 194 PVTTAIIQRGTLRKGSILV-A---GKSWAKVRLMFDENG-------------RAVNEAYPSMPVGIIGWRDLPSAGDEIL 256 (537)
T ss_dssp CCEEEEEEEECCSSEEEEC-C---SSCCEEEEEEEECCC-------------CCSCCSCCSTTCCCCSSEEEEEEESSCC
T ss_pred EEEEEEEECCEEECCCEEE-E---CCCEEEEEEEECCCC-------------CCCCEECCCCEEEEECCCCCCCCCCEEE
T ss_conf 3999999668897699997-3---895499999996899-------------7976986999799978878999999999
Q ss_pred ECCCCCHHHHHH--------H-----------------------HHH--------HHHHHHHHH--------------HH
Q ss_conf 829952199999--------9-----------------------999--------989999763--------------10
Q 000728 1110 VVGPDDDLEDVK--------E-----------------------EAM--------EDMKSVMSR--------------ID 1136 (1326)
Q Consensus 1110 v~~~~~~~~~~~--------~-----------------------~~~--------~~~~~~~~~--------------~~ 1136 (1326)
++.++..++.+. . ... +.+..++.. ..
T Consensus 257 ~~~~~~~a~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (537)
T 3izy_P 257 EVESEPRAREVVDWRKYEQEQEKNKEDLKLIEEKRKEHQEAHRKDREKYGTVHWKERSYIKYREKRQQQPLKPKEKLERD 336 (537)
T ss_dssp SCCSSCCCCCCSCCSSSHHHHTGGGBSSCCCCCCCCCCCCCSSTTHHHHSCSHHHHHHHHHHHHHHHHCTTTTCCCCCCC
T ss_pred ECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHCCCC
T ss_conf 56875899999999999999876532133344444555677787665410110355556666532211101101210256
Q ss_pred CCCCCEEEECCCCCCHHHHHHHHCC----CCCEEEEEEEECCCCCCCHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHH
Q ss_conf 1488459970885669999987324----980222778531755411288885210013753199981899998899999
Q 000728 1137 KSGEGVCVQASTLGSLEALLEFLKS----DAVKIPVSGISIGPVHKKDVMRASVMLEKKKEYATILAFDVKVTPEARELA 1212 (1326)
Q Consensus 1137 ~~~~gv~vkadt~GSlEAl~~~L~~----~~v~i~V~~~~vG~Vt~~DV~~As~~~~~~~~~a~IlaFnVkv~~~a~~~A 1212 (1326)
....++||||||+||||||+.+|.. ++|+++|++++||+||++||++|++ ++|+||||||++++.++.+|
T Consensus 337 ~~~~~~iik~d~~Gs~ea~~~~l~~~~~~~~~~~~i~~~~vG~i~~~Dv~~a~~------~~a~i~~fnv~~~~~~~~~a 410 (537)
T 3izy_P 337 SNVLPVIVKGDVDGSVEAILNVMDTYDASHECELDLVHFGVGDISENDVNLAET------FHGVIYGFNVNAGNVIQQLA 410 (537)
T ss_dssp CCCCCBEEEBCCHHHHHHHHHHHHHCCCCSSCCCCBSCCCBSCBCHHHHHHHHH------HSCCEEESSCCBCHHHHHHH
T ss_pred CCEEEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCHHHHHHHHH------CCCEEEEECCCCCHHHHHHH
T ss_conf 642559999677360999999998568887078999983078898889999874------48869995578897899999
Q ss_pred HHCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHH-HCCEECCCEEEEECCCCCC--CCCCEEEEEEEEEEEEEECCEEE
Q ss_conf 98098199902376899999999822246777764-0420003124550453237--88986998999654784189067
Q 000728 1213 EELGVKIFIADIIYHLFDQFTAYINNLKEEKKREA-ADEAVFPCVLKILPNCVFN--KKDPIVLGVDVVEGIAKVRMLEL 1289 (1326)
Q Consensus 1213 ~~~gV~I~~~~IIY~L~d~~~~~~~~l~~~~~~e~-~~~av~p~~l~i~~~~vf~--~k~p~IaG~~V~~G~lk~gt~i~ 1289 (1326)
++.||+|++|+|||||+|+|+++|.+++++...+. .|.|. ++++| .|+ ++.|.||||+|++|+|++|+++
T Consensus 411 ~~~~v~i~~~~iiy~l~~~~~~~~~~~l~~~~~e~~~g~a~---v~~~f---~~~~~~~~~~iaG~~v~~G~i~~~~~~- 483 (537)
T 3izy_P 411 AKKGVKIKLHKIIYRLIEDLQEELSSRLPCIVEEHPIGEAS---ILATF---SITEGKKKVPVAGCRVQKGQIEKQKKF- 483 (537)
T ss_dssp HHHTCCCBCSCSSCCSHHHHHHHHSSSSSCSSSCCCSSEEE---EEEEE---SSCSSSCCSCEEEEEECSSEEESSSEE-
T ss_pred HHCCCEEEEECHHHHHHHHHHHHHHHCCCCCEEEEEEEEEE---ECCCE---EECCCCCCCCEEEEEEEECEEEECCEE-
T ss_conf 87698699927499999999999974268703788889999---95818---988877567178999972728608807-
Q ss_pred EEEECCCEEEEEEEEEEEEEEECCCCCCCCCCCC
Q ss_conf 9970599099998530044310543347334589
Q 000728 1290 QFVFPKGILLILAELRLLKITINPLILPRKARKQ 1323 (1326)
Q Consensus 1290 ~~v~r~~~~~~~g~i~sl~~~~~~~~~~~~~~~~ 1323 (1326)
+++|+|.+||.|+|.||||+|++|. .+++|+
T Consensus 484 -r~~r~~~~i~~g~i~slk~~k~~v~--ev~~g~ 514 (537)
T 3izy_P 484 -KLIRNGHVIWKGSLISLKHHKDDTS--VVKTGM 514 (537)
T ss_dssp -EEESSSSEEEEEECCCCCCSSCCCS--EEETTC
T ss_pred -EEECCCEEEEEEEEEHHCCCCCCCC--EECCCC
T ss_conf -9964998999988830342582543--576898
No 4
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=1.00 E-value=1 Score=282.93 Aligned_cols=258 Identities=23% Similarity=0.358 Sum_probs=194.1
Q ss_pred CCCCCCCCCEEEEEECCCCCHHHHHHHHHCCC-------CCCCCCCCEEEEEEEEEECCCCCHHHHHHHCCCCCCCCCCE
Q ss_conf 33137899899999099999889999998496-------43455575036520468114320002233002334577989
Q 000728 787 QAEENLRSPICCIMGHVDTGKTKLLDCIRGTN-------VQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGL 859 (1326)
Q Consensus 787 ~~~~~~R~piV~IlGhvdsGKTTLLd~L~~t~-------v~~geagGITq~iga~~~~~e~~~~~t~~v~~~~~~~~~~i 859 (1326)
+....+++++|+|+||+|||||||+++|++.. ......+|||++++..++.+.. ..+
T Consensus 12 ~~~~~m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~----------------~~i 75 (482)
T 1wb1_A 12 RPHMDFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN----------------YRI 75 (482)
T ss_dssp -CCCCCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT----------------EEE
T ss_pred CHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEECCEEEEEECC----------------EEE
T ss_conf 2443389889999999998299999999788764112555223357617830569999899----------------799
Q ss_pred EEEECCCCCCHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 99929999621456640157556148962313588566799999998139937999720355467655788038999997
Q 000728 860 LVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQ 939 (1326)
Q Consensus 860 ~iIDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~vPiIVviNKiD~~~~w~~~~~a~i~~~l~~ 939 (1326)
+|||||||++|..++.++++.+|++|||||+++|+++||.+++.++...++|+||++||+|+.. ..
T Consensus 76 ~iiDtPGh~~~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~ip~IvviNK~Dl~~-------~~------- 141 (482)
T 1wb1_A 76 TLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAG-------TE------- 141 (482)
T ss_dssp EECCCSSHHHHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCBCEEEECTTSSC-------HH-------
T ss_pred EEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCC-------CH-------
T ss_conf 9998988699999999888449999999956878657789999999984998899997877322-------01-------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 64999999989899999999980-78312320135889621498478767999025899999998886865310146551
Q 000728 940 QNTDVQNEFNMRLVQIVTQLKEQ-GMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQ 1018 (1326)
Q Consensus 940 q~~~~~~ef~~~i~~I~~~L~e~-Gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~L~~~~q~~l~e~l~~~~~~~ 1018 (1326)
.+......+...+... ++. .++++++||++|.||.+|+..|..+++.+... .....+++
T Consensus 142 -------~~~~~~~~l~~~l~~~~~~~------------~~~ii~vSA~~g~gI~~L~~~L~~~i~~~~~~-~~~~~~~~ 201 (482)
T 1wb1_A 142 -------EIKRTEMIMKSILQSTHNLK------------NSSIIPISAKTGFGVDELKNLIITTLNNAEII-RNTESYFK 201 (482)
T ss_dssp -------HHHHHHHHHHHHHHHSSSGG------------GCCEEECCTTTCTTHHHHHHHHHHHHHHSCCC-CCSSSCCB
T ss_pred -------HHHHHHHHHHHHHHHHCCCC------------CCEEEEEECCCCCCHHHHHHHHHHHHCCCCCC-CCCCCCCC
T ss_conf -------58999999999986413555------------63199987767988799999998761276445-65212555
Q ss_pred EEEEEEEEEECCEEEEEEEEEEEEECCCCEEEECCCCCCEEEEEEECCCCCCCCEEEECCEEECCCCCCCC---CCEEEE
Q ss_conf 16999999808515999999810762798898816789604655430389988200111111001010223---551660
Q 000728 1019 CTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAA---QGIKIT 1095 (1326)
Q Consensus 1019 ~~VlEvk~~~G~G~vi~~iV~~G~Lk~GD~IVl~g~~g~~~~~Ir~Ll~p~p~~e~rVk~~~~~~keV~aa---~gv~i~ 1095 (1326)
+.|..++.+.|.|+++++.|.+|+|+.||.+++++.. ...+|+++++++..+..| +.+.+.
T Consensus 202 ~~v~~v~~~~g~G~v~~g~v~~G~l~~gd~v~~~p~~----------------~~~~V~~i~~~~~~v~~a~~G~~v~~~ 265 (482)
T 1wb1_A 202 MPLDHAFPIKGAGTVVTGTINKGIVKVGDELKVLPIN----------------MSTKVRSIQYFKESVMEAKAGDRVGMA 265 (482)
T ss_dssp CBCSCEECCSSCCCEECCCCCBSCCCSSEEECCTTTC----------------CCEEECCBCGGGSCBCCCCSSCCCCEE
T ss_pred CCCEEEEEECCCCEEEEEEEEEEEEEECCEEEECCCC----------------CEEEEEEEEECCEEEEEECCCCEEEEE
T ss_conf 3111589964883499999987699609999999999----------------689992999999085072599989999
Q ss_pred CCCCCCCCCCCCEEE
Q ss_conf 156532357995388
Q 000728 1096 AQGLEHAIAGTGLYV 1110 (1326)
Q Consensus 1096 ~~gl~~~~aG~~~~v 1110 (1326)
+.|++......+.++
T Consensus 266 l~~~~~~~i~~Gdvl 280 (482)
T 1wb1_A 266 IQGVDAKQIYRGXIL 280 (482)
T ss_dssp CSSCCSSCCCSSCBC
T ss_pred ECCCCHHHCCCCCEE
T ss_conf 669978631565267
No 5
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=1.00 E-value=1 Score=282.56 Aligned_cols=256 Identities=25% Similarity=0.299 Sum_probs=183.1
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHCCCC-------------------------------CCCCCCCEEEEEEEEEECCCCC
Q ss_conf 998999990999998899999984964-------------------------------3455575036520468114320
Q 000728 793 RSPICCIMGHVDTGKTKLLDCIRGTNV-------------------------------QEGEAGGITQQIGATYFPAENI 841 (1326)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~t~v-------------------------------~~geagGITq~iga~~~~~e~~ 841 (1326)
..++|+|+||+|||||||+++|++... .....+|||++++..++.+
T Consensus 176 ~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~--- 252 (592)
T 3mca_A 176 PVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFES--- 252 (592)
T ss_dssp CEEEEEEECCSSSTHHHHHHHHHHHHHCC---------------------------------------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHCCCHHHHCCCEEEEEEEEEEEE---
T ss_conf 85189998589998899999999871885467889887767651875201344422534441388169753899971---
Q ss_pred HHHHHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHCCCCCCEEEEEECCCCCC-------CHHHHHHHHHHHHCCCC-EE
Q ss_conf 00223300233457798999929999621456640157556148962313588-------56679999999813993-79
Q 000728 842 RERTRELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGL-------EPQTIESLNLLKMRNTE-FI 913 (1326)
Q Consensus 842 ~~~t~~v~~~~~~~~~~i~iIDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv-------~~QT~E~l~~l~~~~vP-iI 913 (1326)
....|+|||||||..|..++.++++.+|++|||||+.+|. ++||.+++.++...++| +|
T Consensus 253 -------------~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~lgip~iI 319 (592)
T 3mca_A 253 -------------DKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIV 319 (592)
T ss_dssp -------------------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHSSCCCEE
T ss_pred -------------CCEEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEE
T ss_conf -------------9948999989982888999998886589999999788775222446555799999999983998499
Q ss_pred EEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCH
Q ss_conf 9972035546765578803899999764999999989899999999-980783123201358896214984787679990
Q 000728 914 VALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQL-KEQGMNTELYYKNKDRGETFNIVPTSAISGEGI 992 (1326)
Q Consensus 914 VviNKiD~~~~w~~~~~a~i~~~l~~q~~~~~~ef~~~i~~I~~~L-~e~Gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI 992 (1326)
||+||||++. |. . ..+......+...+ ...|+.. ..+++||+||++|.||
T Consensus 320 vviNKiDl~~-~~----~--------------~~~~~i~~el~~~l~~~~g~~~----------~~~~ii~iSA~~G~gI 370 (592)
T 3mca_A 320 VSVNKLDLMS-WS----E--------------DRFQEIKNIVSDFLIKMVGFKT----------SNVHFVPISAISGTNL 370 (592)
T ss_dssp EEEECGGGGT-TC----H--------------HHHHHHHHHHHHHHTTTSCCCG----------GGEEEEEECSSSCSSS
T ss_pred EEEECCCCCC-CC----H--------------HHHHHHHHHHHHHHHHHHCCCC----------CCEEEEEEECCCCCCC
T ss_conf 9996346655-43----7--------------8999999999999987508886----------6248999754557543
Q ss_pred H--------------HHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCEEEEEEEEEEEEECCCCEEEECCCCCCE
Q ss_conf 2--------------58999999988868653101465511699999980851599999981076279889881678960
Q 000728 993 P--------------DLLLLLVQWTQKTMVEKLTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPI 1058 (1326)
Q Consensus 993 ~--------------eLl~~L~~~~q~~l~e~l~~~~~~~~~VlEvk~~~G~G~vi~~iV~~G~Lk~GD~IVl~g~~g~~ 1058 (1326)
. .|+..|..+.+ .......++++.|.+++.+ |.|+++.|.|.+|+|+.||.|++++.+
T Consensus 371 ~e~~~~~~~~w~~g~~Lle~l~~~~p----p~~~~~~p~r~~v~~v~~~-~~g~v~~G~v~~G~l~~Gd~v~i~p~~--- 442 (592)
T 3mca_A 371 IQKDSSDLYKWYKGPTLLSALDQLVP----PEKPYRKPLRLSIDDVYRS-PRSVTVTGRVEAGNVQVNQVLYDVSSQ--- 442 (592)
T ss_dssp CSCCCCGGGGTCCSCCHHHHHHTSCC----CSCTTTSCCEEEEEEEEEE-TTEEEEEEEEEESEEETTCEEEETTTT---
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHCC----CCCCCCCCCHHEEEEEEEC-CCEEEEEEEEEEEEECCCCEEEECCCC---
T ss_conf 34543221223540789999975206----5555555600124689955-982999999941367369889991699---
Q ss_pred EEEEEECCCCCCCCEEEECCEEECCCCCC-CC---CCEEEECCCCCCCCCCCCEEECCCC
Q ss_conf 46554303899882001111110010102-23---5516601565323579953882995
Q 000728 1059 VTTIRALLTPHPMKELRVKGTYLHHKQIK-AA---QGIKITAQGLEHAIAGTGLYVVGPD 1114 (1326)
Q Consensus 1059 ~~~Ir~Ll~p~p~~e~rVk~~~~~~keV~-aa---~gv~i~~~gl~~~~aG~~~~v~~~~ 1114 (1326)
...+|+++++|+..+. .| +.+.+.+.|++...+..|.+++.++
T Consensus 443 -------------~~~~V~~i~~~~~~~~~~a~aG~~v~~~l~~i~~~~i~rG~vl~~~~ 489 (592)
T 3mca_A 443 -------------EDAYVKNVIRNSDPSSTWAVAGDTVTLQLADIEVNQLRPGDILSNYE 489 (592)
T ss_dssp -------------EEEEEEEEECSSSCSCCEEETTCEEEEEESSSCGGGCCTTCEEECSS
T ss_pred -------------CEEEEEEEEECCCCCCCEECCCCEEEEEECCCCCCCCCEEEEECCCC
T ss_conf -------------46899999975845763406898899997253002331378852699
No 6
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=1.00 E-value=1 Score=282.10 Aligned_cols=296 Identities=20% Similarity=0.248 Sum_probs=191.3
Q ss_pred CCCCCCCCCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCEEEE-----EEEEEECCCCCHHHHHHHCC---CCCCCCCC
Q ss_conf 33137899899999099999889999998496434555750365-----20468114320002233002---33457798
Q 000728 787 QAEENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQ-----IGATYFPAENIRERTRELKA---NATLKVPG 858 (1326)
Q Consensus 787 ~~~~~~R~piV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~-----iga~~~~~e~~~~~t~~v~~---~~~~~~~~ 858 (1326)
....++|| |+|+||+|||||||+++|+...-.....|.+... ....+.+.+ ++|.+++++ .+.|+.+.
T Consensus 26 ~e~~r~RN--iaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~E--reRGITI~s~~~~~~~~~~~ 101 (548)
T 3vqt_A 26 REAARRRT--FAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAME--RERGISVTTSVMQFPYRDRV 101 (548)
T ss_dssp HHHHTEEE--EEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC----------------------CTTTEEEEEETTEE
T ss_pred HCCCCCCE--EEEEECCCCCHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCHHHH--HHCCCCEEECEEEEEECCEE
T ss_conf 11136666--999908998899999999986686321541643766554336772889--87797475046999879989
Q ss_pred EEEEECCCCCCHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHH
Q ss_conf 99992999962145664015755614896231358856679999999813993799972035546765578803899999
Q 000728 859 LLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIK 938 (1326)
Q Consensus 859 i~iIDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~vPiIVviNKiD~~~~w~~~~~a~i~~~l~ 938 (1326)
|||||||||.+|+..+.|+++.||+||||||+..|+++||...|+++..+++|+|++|||||+. ++++...+.
T Consensus 102 iNlIDTPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~~lp~i~fINK~Dr~-------~ad~~~~~~ 174 (548)
T 3vqt_A 102 VNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRATPVMTFVNKMDRE-------ALHPLDVMA 174 (548)
T ss_dssp EEEECCCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSC-------CCCHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCH-------HCCHHHHHH
T ss_conf 9999698827778999999975680599830588730441889999987187369887346601-------102667544
Q ss_pred HHHHHHHH-----------------------------------------------------HHHH---HHHHHHHHHHHC
Q ss_conf 76499999-----------------------------------------------------9989---899999999980
Q 000728 939 QQNTDVQN-----------------------------------------------------EFNM---RLVQIVTQLKEQ 962 (1326)
Q Consensus 939 ~q~~~~~~-----------------------------------------------------ef~~---~i~~I~~~L~e~ 962 (1326)
.....+.. .+.. ........+...
T Consensus 175 ~i~~~l~~~~~p~~~Pig~~~~f~g~vdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 254 (548)
T 3vqt_A 175 DIEQHLQIECAPMTWPIGMGSSFKGTYDLLHKQLHLFSATHGGRIQSGIVIHGADDPQLDEYLGDQAEQLRMDLALLEEA 254 (548)
T ss_dssp HHHHHHTSEEEESEEEESCGGGCCEEEETTTTEEEECC-------CCCEECCSTTCTHHHHHHGGGHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCEEEEEEEEECCCCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 55542388247677225158853305765313432104233786432323223543889998888888766689887540
Q ss_pred CC--CHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHH------HCCCCCCEEEEEEEEE---ECCE
Q ss_conf 78--31232013588962149847876799902589999999888686531------0146551169999998---0851
Q 000728 963 GM--NTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKL------TFRNELQCTVLEVKVI---EGHG 1031 (1326)
Q Consensus 963 Gl--~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~L~~~~q~~l~e~l------~~~~~~~~~VlEvk~~---~G~G 1031 (1326)
+. ..+.+. -|..+|+++.||++|.||..||+.++.+++.+..... ....++.+.|+.+... ..+|
T Consensus 255 ~~~~~~e~~~----~g~~~PV~~gSA~~~~Gv~~LLd~iv~~~PsP~~~~~~~~~~~~~~~p~~a~vfKi~~~~~~~~~G 330 (548)
T 3vqt_A 255 GTPFDEERYL----KGELTPVFFGSAINNFGVREMLDMFVEFAPGPQPRPAATRVVEPGEEAFTGVVFKIQANMDKAHRD 330 (548)
T ss_dssp CCCCCHHHHH----TTSEEEEEECBGGGTBSHHHHHHHHHHHSCCSCCEEBSSSEECTTCSSCEEEEEEEECC-------
T ss_pred CCCHHHHHHH----HCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCC
T ss_conf 5736499998----298310261454558589999999997479987754323455899767437999997057767787
Q ss_pred EEEEEEEEEEEECCCCEEEECCCCCCEEEEEEECCCCCCCCEEEECCEEECCCCCCC-CCCEEEECCCCCCCCCCCCEE
Q ss_conf 599999981076279889881678960465543038998820011111100101022-355166015653235799538
Q 000728 1032 TTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKA-AQGIKITAQGLEHAIAGTGLY 1109 (1326)
Q Consensus 1032 ~vi~~iV~~G~Lk~GD~IVl~g~~g~~~~~Ir~Ll~p~p~~e~rVk~~~~~~keV~a-a~gv~i~~~gl~~~~aG~~~~ 1109 (1326)
.+..++|++|+|+.|+.+.....+. ..+|..++...+.. ...|.. ..|..+++.||.....|+++.
T Consensus 331 rla~~RV~sG~l~~g~~v~~~~~~~--~~rv~~l~~~~g~~----------~~~v~~a~AGdIvai~gl~~~~~GDTl~ 397 (548)
T 3vqt_A 331 RMAFLRICSGTFTRGMRLKHHRTGK--DVTVANATIFMAQD----------RTGVEEAFPGDIIGIPNHGTIKIGDTFT 397 (548)
T ss_dssp CEEEEEEEESCEETTCEEEETTTTE--EEECTTCEECCCSS----------CCSSCEECTTCEEEEECSSCCCTTCEEE
T ss_pred EEEEEEEECCEECCCCEEEEECCCC--CCCCCHHHHHCCCC----------CCCCCEEECCCEEEECCCCCCCCCCEEC
T ss_conf 6999998535445899898412333--00001133420566----------6436788469899856876676378816
No 7
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=1.00 E-value=1 Score=279.07 Aligned_cols=264 Identities=23% Similarity=0.359 Sum_probs=190.4
Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHCCC-------------------------------CCCCCCCCEEEEEEEEEECCCC
Q ss_conf 899899999099999889999998496-------------------------------4345557503652046811432
Q 000728 792 LRSPICCIMGHVDTGKTKLLDCIRGTN-------------------------------VQEGEAGGITQQIGATYFPAEN 840 (1326)
Q Consensus 792 ~R~piV~IlGhvdsGKTTLLd~L~~t~-------------------------------v~~geagGITq~iga~~~~~e~ 840 (1326)
...++|+|+||+|+|||||+++|++.. ......+|||++++..++.+..
T Consensus 15 k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~ 94 (439)
T 3j2k_7 15 KEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEK 94 (439)
T ss_pred CCEEEEEEEECCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHCCCHHHHHCCCEEEEEEEEEECCC
T ss_conf 86239999938999989999999987399766788888888875066622245543365567606943987589996198
Q ss_pred CHHHHHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHCCCCCCEEEEEECCCCCCC-------HHHHHHHHHHHHCCCC-E
Q ss_conf 0002233002334577989999299996214566401575561489623135885-------6679999999813993-7
Q 000728 841 IRERTRELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLE-------PQTIESLNLLKMRNTE-F 912 (1326)
Q Consensus 841 ~~~~t~~v~~~~~~~~~~i~iIDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~-------~QT~E~l~~l~~~~vP-i 912 (1326)
..|+|||||||++|..++.++++.+|++|||||+.+|++ +||.+++.++...++| +
T Consensus 95 ----------------~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~i 158 (439)
T 3j2k_7 95 ----------------KHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHL 158 (439)
T ss_pred ----------------EEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCEE
T ss_conf ----------------5799998997078899998548568999999989978411456777438999999998499848
Q ss_pred EEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCH
Q ss_conf 99972035546765578803899999764999999989899999999980783123201358896214984787679990
Q 000728 913 IVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGI 992 (1326)
Q Consensus 913 IVviNKiD~~~~w~~~~~a~i~~~l~~q~~~~~~ef~~~i~~I~~~L~e~Gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI 992 (1326)
||++||||+.. .++. +..+......+...+...|++.. ..+++||+||++|.||
T Consensus 159 IvviNK~Dl~~-------~~~~----------~~~~~~i~~~~~~~l~~~g~~~~---------~~~~~i~iSA~~G~ni 212 (439)
T 3j2k_7 159 IVLINKMDDPT-------VNWS----------NERYEECKEKLVPFLKKVGFNPK---------KDIHFMPCSGLTGANL 212 (439)
T ss_pred EEEEECCCCCC-------CCHH----------HHHHHHHHHHHHHHHHHHCCCCC---------CCEEEEEEECCCCCCC
T ss_conf 99753478766-------2257----------99999999999999987423545---------7705999643577553
Q ss_pred HHHHHHHHHHHHHHHHHHH--------HCCCCCCEEEEEEEEEECCEEEEEEEEEEEEECCCCEEEECCCCCCEEEEEEE
Q ss_conf 2589999999888686531--------01465511699999980851599999981076279889881678960465543
Q 000728 993 PDLLLLLVQWTQKTMVEKL--------TFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRA 1064 (1326)
Q Consensus 993 ~eLl~~L~~~~q~~l~e~l--------~~~~~~~~~VlEvk~~~G~G~vi~~iV~~G~Lk~GD~IVl~g~~g~~~~~Ir~ 1064 (1326)
.+++..+.|+....+.+.+ ....++++.|.+++ .|.|+++.|.|.+|+|+.||.|++++++
T Consensus 213 ~~l~~~~~w~~g~~L~~~l~~i~~~~~~~~~p~r~~v~~~~--~~~G~v~~G~v~~G~l~~Gd~v~~~p~~--------- 281 (439)
T 3j2k_7 213 KEQSDFCPWYIGLPFIPYLDNLPNFNRSVDGPIRLPIVDKY--KDMGTVVLGKLESGSIFKGQQLVMMPNK--------- 281 (439)
T ss_pred CCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEE--CCCCEEEEEEEEEEEEECCCEEEECCCC---------
T ss_conf 11233454467267999997478976677787289999897--4997599999973479549999973589---------
Q ss_pred CCCCCCCCEEEECCEEECCCCCCCC---CCEEEECCCCCCCCCCCCEEECCCCC
Q ss_conf 0389988200111111001010223---55166015653235799538829952
Q 000728 1065 LLTPHPMKELRVKGTYLHHKQIKAA---QGIKITAQGLEHAIAGTGLYVVGPDD 1115 (1326)
Q Consensus 1065 Ll~p~p~~e~rVk~~~~~~keV~aa---~gv~i~~~gl~~~~aG~~~~v~~~~~ 1115 (1326)
...+|+++++|+..+..| +.+.+.+.|++.....+|.+++.++.
T Consensus 282 -------~~~~V~~i~~~~~~~~~a~aG~~v~~~l~gi~~~~i~rG~vl~~~~~ 328 (439)
T 3j2k_7 282 -------HNVEVLGILSDDTETDFVAPGENLKIRLKGIEEEEILPGFILCDPSN 328 (439)
T ss_pred -------CEEEEEEEEECCEECCEECCCCCCEEEEECCCHHHCCCCEEECCCCC
T ss_conf -------45788999778807377328985468992355643487087327999
No 8
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=1.00 E-value=1 Score=278.81 Aligned_cols=251 Identities=20% Similarity=0.245 Sum_probs=171.0
Q ss_pred CCCCCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCC-CCHHHHHHHCC---CCCCCCCCEEEEECCC
Q ss_conf 7899899999099999889999998496434555750365204681143-20002233002---3345779899992999
Q 000728 791 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAE-NIRERTRELKA---NATLKVPGLLVIDTPG 866 (1326)
Q Consensus 791 ~~R~piV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~~~e-~~~~~t~~v~~---~~~~~~~~i~iIDTPG 866 (1326)
.+|| |+|+||+|||||||+++|+...-.....+.+.. +.++..+. ..++|.+++++ ...|+.+.||||||||
T Consensus 1 kIRN--i~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~--g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPG 76 (638)
T 3j25_A 1 KIIN--IGVLAHVDAGKTTLTESLLYNSGAITELGSVDK--GTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPG 76 (638)
T ss_dssp CCCC--CEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCC--SCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCC
T ss_pred CEEE--EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCC--CCCCCCCCHHHHHCCCCEEEEEEEEEECCEEEEEEECCC
T ss_conf 9569--999948999989999999997499751532126--874568848898679768952599998998999997988
Q ss_pred CCCHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHH-
Q ss_conf 9621456640157556148962313588566799999998139937999720355467655788038999997649999-
Q 000728 867 HESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQ- 945 (1326)
Q Consensus 867 He~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~vPiIVviNKiD~~~~w~~~~~a~i~~~l~~q~~~~~- 945 (1326)
|.+|+..+.|+++.||+||||||+..|+++||..+|+++..+++|+|++|||||+. ++++...+......+.
T Consensus 77 H~DF~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~lp~i~~INKmDr~-------~a~~~~~~~~i~~~l~~ 149 (638)
T 3j25_A 77 HMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTIFFINKIDQN-------GIDLSTVYQDIKEKLSA 149 (638)
T ss_dssp SSSTHHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHHTCSCEECCEECCSS-------SCCSHHHHHHHHHTTCC
T ss_pred CHHHHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCC-------CCCHHHHHHHHHHHHCC
T ss_conf 17889999999998598999996898974789999999997599828998423545-------68999999999998678
Q ss_pred ---------------------HHHHHHHH----HHHHHHH-HCCCCHHHHHC----CCCCCCCEEEEECCCCCCCCHHHH
Q ss_conf ---------------------99989899----9999999-80783123201----358896214984787679990258
Q 000728 946 ---------------------NEFNMRLV----QIVTQLK-EQGMNTELYYK----NKDRGETFNIVPTSAISGEGIPDL 995 (1326)
Q Consensus 946 ---------------------~ef~~~i~----~I~~~L~-e~Gl~~e~~~~----~~~~g~~v~iVpvSA~tGeGI~eL 995 (1326)
.+....+. .++..+. ...+....... ....+..+|+++.||++|.||..|
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSa~~~~Gv~~L 229 (638)
T 3j25_A 150 EIVIKQKVELYPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHGSAKSNIGIDNL 229 (638)
T ss_dssp CCCCCCCCCSCGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCCCCCCSTTCCSHHHH
T ss_pred CCCCCCEEEEECCCCCCCCCHHHHHHHHHCCCHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHH
T ss_conf 73214315763342111221566644554066778765306775666778888766402452146323434258783427
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCEEEEEEEEEEEEECCCCEEEECCCC
Q ss_conf 999999988868653101465511699999980851599999981076279889881678
Q 000728 996 LLLLVQWTQKTMVEKLTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQ 1055 (1326)
Q Consensus 996 l~~L~~~~q~~l~e~l~~~~~~~~~VlEvk~~~G~G~vi~~iV~~G~Lk~GD~IVl~g~~ 1055 (1326)
|+.++.+++.+.. ....++.+.|+.+.+....|.++.++|++|+|+.|+.+.+....
T Consensus 230 Ld~i~~~~p~p~~---~~~~~~~~~Vfk~~~d~~~G~la~~RV~sG~l~~g~~v~~~~~~ 286 (638)
T 3j25_A 230 IEVITNKFYSSTH---RGPSELCGNVFKIEYTKKRQRLAYIRLYSGVLHLRDSVRVSEKE 286 (638)
T ss_dssp HHHHHHSCCCSGG---GSCCCCCBEEBCCCCCSTTCCCCBCCBSSBCCCSCCCSSSCCCC
T ss_pred HHHHHCCCCCCCC---CHHHHHCCEEEEEEEECCCCEEEEEEEECCCCCCCCCCCCCCCC
T ss_conf 6543203667510---00111121455544211585599999973863378744345675
No 9
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=1.00 E-value=1 Score=276.60 Aligned_cols=290 Identities=21% Similarity=0.230 Sum_probs=190.0
Q ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHCCC--------CC----------CCCCCCEEEEEEEEEECCCCCHHHHHHHCCC
Q ss_conf 37899899999099999889999998496--------43----------4555750365204681143200022330023
Q 000728 790 ENLRSPICCIMGHVDTGKTKLLDCIRGTN--------VQ----------EGEAGGITQQIGATYFPAENIRERTRELKAN 851 (1326)
Q Consensus 790 ~~~R~piV~IlGhvdsGKTTLLd~L~~t~--------v~----------~geagGITq~iga~~~~~e~~~~~t~~v~~~ 851 (1326)
+++|| |||+||+|||||||+++|+..+ +. ....+|||+...+..+.|....
T Consensus 11 ~~IRN--i~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~--------- 79 (709)
T 4fn5_A 11 NRYRN--IGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSR--------- 79 (709)
T ss_dssp GGEEE--EEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTT---------
T ss_pred HHCEE--EEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCCCCCCHHHHHHCCCEEEEEEEEEEECCCC---------
T ss_conf 87729--9999489999899999999962998757604389756798499997497297603899961676---------
Q ss_pred CCCCCCCEEEEECCCCCCHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCC
Q ss_conf 34577989999299996214566401575561489623135885667999999981399379997203554676557880
Q 000728 852 ATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNA 931 (1326)
Q Consensus 852 ~~~~~~~i~iIDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~vPiIVviNKiD~~~~w~~~~~a 931 (1326)
..++.+.|||||||||.+|+..+.++++.||+||||||+..|+++||...|+++...++|+|++||||||. ++
T Consensus 80 ~~~~~~~iNlIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~~lp~i~~iNKiDr~-------~a 152 (709)
T 4fn5_A 80 GQYDNYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKYGVPRIVYVNKMDRQ-------GA 152 (709)
T ss_dssp SCSCCEEEEEECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHHTCCEEEEEECSSST-------TC
T ss_pred CCCCCEEEEEEECCCCCCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCC-------CC
T ss_conf 77887799999398976408999999987485899997998975638999999997599869997166666-------76
Q ss_pred HHHHHHHHHHHHH--------------------------------------------------------HHHHHHHH---
Q ss_conf 3899999764999--------------------------------------------------------99998989---
Q 000728 932 PIVKAIKQQNTDV--------------------------------------------------------QNEFNMRL--- 952 (1326)
Q Consensus 932 ~i~~~l~~q~~~~--------------------------------------------------------~~ef~~~i--- 952 (1326)
++...+......+ +..+-..+
T Consensus 153 ~~~~~~~ei~~~l~~~~~~~~~pi~~~~~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 232 (709)
T 4fn5_A 153 NFLRVVEQIKKRLGHTPVPVQLAIGAEENFVGQVDLIKMKAIYWNDDDKGMTYREEEIPAELKDLAEEWRSSMVEAAAEA 232 (709)
T ss_dssp CHHHHHHHHHHHHCSCEEESEEEESSSTTCCEEEETTTTEEEEEEC--CCCEEEECCCCHHHHHHHHHHHHHHHHHHHTS
T ss_pred CHHHHHHHHHHHCCCCEEEEECCCCCHHCCCEEEEEEEEEEEEEECCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf 68999877622045622555435573001553898751067884044578631013463788888999988789887744
Q ss_pred -HHHHHHHHHCC-CCHHHH----HCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHH-----------------
Q ss_conf -99999999807-831232----0135889621498478767999025899999998886865-----------------
Q 000728 953 -VQIVTQLKEQG-MNTELY----YKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVE----------------- 1009 (1326)
Q Consensus 953 -~~I~~~L~e~G-l~~e~~----~~~~~~g~~v~iVpvSA~tGeGI~eLl~~L~~~~q~~l~e----------------- 1009 (1326)
..+...+.+.+ +..... ......+..+|++..||.++.|++.||+.++.+++.+..-
T Consensus 233 d~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~pv~~gsa~~~~gv~~lLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~ 312 (709)
T 4fn5_A 233 NEELMNKYLEEGELSEAEIKEGLRLRTLACEIVPAVCGSSFKNKGVPLVLDAVIDYLPAPTEIPAIKGVSPDDETVEDER 312 (709)
T ss_dssp SHHHHHHHHHHSCCCHHHHHHHHHHHHHTTSCEEEEECBTTTTBTHHHHHHHHHHHSCCTTSSCCEECBCCC-CCSCCEE
T ss_pred CHHHHHHHHHCCCCCHHHHHHHHHHHHHHCEEEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 49999998744776277777788886540024550440044677668888878860799754443013377654322223
Q ss_pred HHHCCCCCCEEEEEEEEEECCEEEEEEEEEEEEECCCCEEEECCCCCCEEEEEEECCCCCCCCEEEECCEEECCCCCCC-
Q ss_conf 3101465511699999980851599999981076279889881678960465543038998820011111100101022-
Q 000728 1010 KLTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKA- 1088 (1326)
Q Consensus 1010 ~l~~~~~~~~~VlEvk~~~G~G~vi~~iV~~G~Lk~GD~IVl~g~~g~~~~~Ir~Ll~p~p~~e~rVk~~~~~~keV~a- 1088 (1326)
..+...|+.+.|+.+.+....|.++.++|++|+|+.|+.+........ .+|..|+....... ..|..
T Consensus 313 ~~d~~~pl~~~VfK~~~d~~~G~la~~RV~sGtl~~G~~v~~~~~~~~--~~v~~l~~~~g~~~----------~~v~~~ 380 (709)
T 4fn5_A 313 HADDNEPFSSLAFKIATDPFVGTLTFARVYSGVLSSGDSVLNSVKGKK--ERVGRMVQMHANQR----------EEIKEV 380 (709)
T ss_dssp CSCTTSCCEEEEEECCCBTTTBCCCEEEEEESCEETTCBCBCTTTCCC--CBCCCEECCCSSCC----------CEESEE
T ss_pred CCCCCCCCEEEEEEEECCCCCCCEEEEECCCCCCCCCCEEEEECCCCE--EEECCEEEEECCEE----------EEEEEE
T ss_conf 578667615799995035677705777325898888999997239957--75034067630101----------482066
Q ss_pred CCCEEEECCCCCCCCCCCCEE
Q ss_conf 355166015653235799538
Q 000728 1089 AQGIKITAQGLEHAIAGTGLY 1109 (1326)
Q Consensus 1089 a~gv~i~~~gl~~~~aG~~~~ 1109 (1326)
..|..+.+.||.....|+++.
T Consensus 381 ~aGdIv~i~Gl~~~~~gdTl~ 401 (709)
T 4fn5_A 381 RAGDIAALIGMKDVTTGDTLC 401 (709)
T ss_dssp CTTCEEEECSCSSCCTTCEEE
T ss_pred CCCCEEEECCCCCCCCCCEEC
T ss_conf 378701463887676388756
No 10
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=1.00 E-value=1 Score=275.70 Aligned_cols=259 Identities=23% Similarity=0.327 Sum_probs=184.2
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHCCCCC----------------CCCCCCEEEEEEEEEECCCCCHHHHHHHCCCCCCCC
Q ss_conf 9989999909999988999999849643----------------455575036520468114320002233002334577
Q 000728 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQ----------------EGEAGGITQQIGATYFPAENIRERTRELKANATLKV 856 (1326)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~t~v~----------------~geagGITq~iga~~~~~e~~~~~t~~v~~~~~~~~ 856 (1326)
..++|+|+||+|||||||+++|++.... .....|||+.+....+.. ..
T Consensus 295 ~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~----------------~~ 358 (1289)
T 3avx_A 295 PHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDT----------------PT 358 (1289)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEEC----------------SS
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECC----------------CC
T ss_conf 70489998289988999999998640235643233322356642132375368888999747----------------98
Q ss_pred CCEEEEECCCCCCHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCC-EEEEEECCCCCCCCCCCCCCHHHH
Q ss_conf 9899992999962145664015755614896231358856679999999813993-799972035546765578803899
Q 000728 857 PGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTE-FIVALNKVDRLYGWKTCRNAPIVK 935 (1326)
Q Consensus 857 ~~i~iIDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~~l~~~~vP-iIVviNKiD~~~~w~~~~~a~i~~ 935 (1326)
..|+|||||||++|..++.++++.+|++|||||+++|+++||.++|.++...++| +||++||||+... ...
T Consensus 359 ~kI~IIDTPGHedF~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~lgIP~IIVVINKiDLv~d------~e~-- 430 (1289)
T 3avx_A 359 RHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDD------EEL-- 430 (1289)
T ss_dssp CEEEEEECCCHHHHHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHHTCSCEEEEEECCTTCCC------HHH--
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCC------HHH--
T ss_conf 799999898839999999998843999999981876675889999999987599869999851454210------346--
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCC--------CCHHHHHHHHHHHHHHHH
Q ss_conf 999764999999989899999999980783123201358896214984787679--------990258999999988868
Q 000728 936 AIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISG--------EGIPDLLLLLVQWTQKTM 1007 (1326)
Q Consensus 936 ~l~~q~~~~~~ef~~~i~~I~~~L~e~Gl~~e~~~~~~~~g~~v~iVpvSA~tG--------eGI~eLl~~L~~~~q~~l 1007 (1326)
+......+...+...|+. +..++++++||++| .||.+|+..|..+++.+.
T Consensus 431 ------------le~i~eEi~elLk~~G~~----------~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip~P~ 488 (1289)
T 3avx_A 431 ------------LELVEMEVRELLSQYDFP----------GDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPEPE 488 (1289)
T ss_dssp ------------HHHHHHHHHHHHHHTTSC----------TTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSCCCC
T ss_pred ------------HHHHHHHHHHHHHHCCCC----------CCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCC
T ss_conf ------------899999999999851346----------6631599987224777786300363466767765368875
Q ss_pred HHHHHCCCCCCEEEEEEEEEECCEEEEEEEEEEEEECCCCEEEECCCCCCEEEEEEECCCCCCCCEEEECCEEECCCCCC
Q ss_conf 65310146551169999998085159999998107627988988167896046554303899882001111110010102
Q 000728 1008 VEKLTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIK 1087 (1326)
Q Consensus 1008 ~e~l~~~~~~~~~VlEvk~~~G~G~vi~~iV~~G~Lk~GD~IVl~g~~g~~~~~Ir~Ll~p~p~~e~rVk~~~~~~keV~ 1087 (1326)
.....++++.|..++.+.|+|++++|+|.+|+|+.||.|+++|+.++.. .+|+++++++..+.
T Consensus 489 ---r~~d~Pfr~pId~Vf~i~G~GtVvtGrV~sGtLkvGD~V~I~ps~~~~~--------------~kVksI~~~~~~v~ 551 (1289)
T 3avx_A 489 ---RAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIKETQK--------------STCTGVEMFRKLLD 551 (1289)
T ss_dssp ---CGGGSCCEEECCEEEEETTTEEEEEEECCBSEEETTCEEEEESSSSCEE--------------EEEEEEECSSCEES
T ss_pred ---CCCCCCEEEECCCCCCCCCCCEEEEEEEECCEEECCCEEEEECCCCCEE--------------EEEEEEEECCCEEE
T ss_conf ---4421210330000001258867999999663896198899936899636--------------99978863692453
Q ss_pred CC---CCEEEECCCCCCCCCCCCEEECCCC
Q ss_conf 23---5516601565323579953882995
Q 000728 1088 AA---QGIKITAQGLEHAIAGTGLYVVGPD 1114 (1326)
Q Consensus 1088 aa---~gv~i~~~gl~~~~aG~~~~v~~~~ 1114 (1326)
.| +.+.+.+.|+.......+.+++.+.
T Consensus 552 eA~AGd~Vgl~L~GI~~~dI~RGdVL~~~~ 581 (1289)
T 3avx_A 552 EGRAGENVGVLLRGIKREEIERGQVLAKPG 581 (1289)
T ss_dssp EEETTCEEEEEESSCCGGGCCTTCEEESTT
T ss_pred EEECCCCCEEEEEECCHHCCCCCCEEECCC
T ss_conf 872687423676401051188625896599
Done!