BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000729
(1326 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2IGQ|A Chain A, Human Euchromatic Histone Methyltransferase 1
pdb|2IGQ|B Chain B, Human Euchromatic Histone Methyltransferase 1
pdb|2RFI|A Chain A, Crystal Structure Of Catalytic Domain Of Human Euchromatic
Histone Methyltransferase 1 In Complex With Sah And
Dimethylated H3k9 Peptide
pdb|2RFI|B Chain B, Crystal Structure Of Catalytic Domain Of Human Euchromatic
Histone Methyltransferase 1 In Complex With Sah And
Dimethylated H3k9 Peptide
pdb|3MO0|A Chain A, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E11
pdb|3MO0|B Chain B, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E11
pdb|3MO2|A Chain A, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E67
pdb|3MO2|B Chain B, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E67
pdb|3MO2|C Chain C, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E67
pdb|3MO2|D Chain D, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E67
pdb|3MO5|A Chain A, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E72
pdb|3MO5|B Chain B, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E72
pdb|3MO5|C Chain C, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E72
pdb|3MO5|D Chain D, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E72
pdb|3SWC|A Chain A, Glp (G9a-Like Protein) Set Domain In Complex With
Dnmt3ak44me2 Peptide
pdb|3SWC|B Chain B, Glp (G9a-Like Protein) Set Domain In Complex With
Dnmt3ak44me2 Peptide
pdb|3SW9|A Chain A, Glp (G9a-Like Protein) Set Domain In Complex With
Dnmt3ak44me0 Peptide
pdb|3SW9|B Chain B, Glp (G9a-Like Protein) Set Domain In Complex With
Dnmt3ak44me0 Peptide
Length = 285
Score = 157 bits (397), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 103/301 (34%), Positives = 156/301 (51%), Gaps = 55/301 (18%)
Query: 1028 DISSGLESVPVACVVDDGLLETLCISADSSDSQKTRCSMPWESFTYVTKPLLDQSLDLDA 1087
DI+ G E +P+ CV ++ DS+ + + S VT P+ ++D +
Sbjct: 32 DIARGYERIPIPCV-------------NAVDSEPCPSNYKYVSQNCVTSPM---NIDRNI 75
Query: 1088 ESLQLGCACANSTCFPETCDHVYLFDNDYEDAKDIDGKSVHGRFPYDQTGRVILE----E 1143
LQ C C + D + + G+ + R YD+ GR++ E E
Sbjct: 76 THLQY-CVCID----------------DCSSSNCMCGQ-LSMRCWYDKDGRLLPEFNMAE 117
Query: 1144 GYLIYECNHMCSCDRTCPNRVLQNGVRVKLEVFKTENKGWAVRAGQAILRGTFVCEYIGE 1203
LI+ECNH CSC R C NRV+QNG+R +L++++T + GW VR+ Q I GTFVCEY+GE
Sbjct: 118 PPLIFECNHACSCWRNCRNRVVQNGLRARLQLYRTRDMGWGVRSLQDIPPGTFVCEYVGE 177
Query: 1204 VLDELETNKRRSRYGRDGCGYMLNIGAHINDMGRLIEGQVRYVIDATKYGNVSRFINHSC 1263
++ + E + R Y+ ++ +G+V Y IDA YGNVSRFINH C
Sbjct: 178 LISDSEADVREED------SYLFDLDNK--------DGEV-YCIDARFYGNVSRFINHHC 222
Query: 1264 FPNLVNHQVLVESMDYQRAHIGLYASRDIAVGEELTYDY--HYELLSGEGYPCHCGASKC 1321
PNLV +V + D + I +++R I GE+L +DY + + G+ + C CG+ KC
Sbjct: 223 EPNLVPVRVFMAHQDLRFPRIAFFSTRLIEAGEQLGFDYGERFWDIKGKLFSCRCGSPKC 282
Query: 1322 R 1322
R
Sbjct: 283 R 283
>pdb|3HNA|A Chain A, Crystal Structure Of Catalytic Domain Of Human Euchromatic
Histone Methyltransferase 1 In Complex With Sah And Mono-
Methylated H3k9 Peptide
pdb|3HNA|B Chain B, Crystal Structure Of Catalytic Domain Of Human Euchromatic
Histone Methyltransferase 1 In Complex With Sah And Mono-
Methylated H3k9 Peptide
Length = 287
Score = 157 bits (396), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 103/301 (34%), Positives = 156/301 (51%), Gaps = 55/301 (18%)
Query: 1028 DISSGLESVPVACVVDDGLLETLCISADSSDSQKTRCSMPWESFTYVTKPLLDQSLDLDA 1087
DI+ G E +P+ CV ++ DS+ + + S VT P+ ++D +
Sbjct: 34 DIARGYERIPIPCV-------------NAVDSEPCPSNYKYVSQNCVTSPM---NIDRNI 77
Query: 1088 ESLQLGCACANSTCFPETCDHVYLFDNDYEDAKDIDGKSVHGRFPYDQTGRVILE----E 1143
LQ C C + D + + G+ + R YD+ GR++ E E
Sbjct: 78 THLQY-CVCID----------------DCSSSNCMCGQ-LSMRCWYDKDGRLLPEFNMAE 119
Query: 1144 GYLIYECNHMCSCDRTCPNRVLQNGVRVKLEVFKTENKGWAVRAGQAILRGTFVCEYIGE 1203
LI+ECNH CSC R C NRV+QNG+R +L++++T + GW VR+ Q I GTFVCEY+GE
Sbjct: 120 PPLIFECNHACSCWRNCRNRVVQNGLRARLQLYRTRDMGWGVRSLQDIPPGTFVCEYVGE 179
Query: 1204 VLDELETNKRRSRYGRDGCGYMLNIGAHINDMGRLIEGQVRYVIDATKYGNVSRFINHSC 1263
++ + E + R Y+ ++ +G+V Y IDA YGNVSRFINH C
Sbjct: 180 LISDSEADVREED------SYLFDLDNK--------DGEV-YCIDARFYGNVSRFINHHC 224
Query: 1264 FPNLVNHQVLVESMDYQRAHIGLYASRDIAVGEELTYDY--HYELLSGEGYPCHCGASKC 1321
PNLV +V + D + I +++R I GE+L +DY + + G+ + C CG+ KC
Sbjct: 225 EPNLVPVRVFMAHQDLRFPRIAFFSTRLIEAGEQLGFDYGERFWDIKGKLFSCRCGSPKC 284
Query: 1322 R 1322
R
Sbjct: 285 R 285
>pdb|3K5K|A Chain A, Discovery Of A 2,4-Diamino-7-Aminoalkoxy-Quinazoline As A
Potent Inhibitor Of Histone Lysine Methyltransferase, G9a
pdb|3K5K|B Chain B, Discovery Of A 2,4-Diamino-7-Aminoalkoxy-Quinazoline As A
Potent Inhibitor Of Histone Lysine Methyltransferase, G9a
pdb|3RJW|A Chain A, Crystal Structure Of Histone Lysine Methyltransferase G9a
With An Inhibitor
pdb|3RJW|B Chain B, Crystal Structure Of Histone Lysine Methyltransferase G9a
With An Inhibitor
Length = 283
Score = 155 bits (393), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 98/306 (32%), Positives = 158/306 (51%), Gaps = 57/306 (18%)
Query: 1024 VLCDDISSGLESVPVACVVDDGLLETLCISADSSDSQKTRCSMPWESFTYVTKPLLDQSL 1083
++C D++ G E+VP+ CV +G+ C E + Y+++ ++
Sbjct: 11 IICRDVARGYENVPIPCV--NGVDGEPCP----------------EDYKYISENCETSTM 52
Query: 1084 DLDAESLQLG-CACANSTCFPETCDHVYLFDNDYEDAKDIDGKSVHGRFPYDQTGRVILE 1142
++D L C C + C C + G+ + R YD+ GR++ E
Sbjct: 53 NIDRNITHLQHCTCVDD-CSSSNC---------------LCGQ-LSIRCWYDKDGRLLQE 95
Query: 1143 ----EGYLIYECNHMCSCDRTCPNRVLQNGVRVKLEVFKTENKGWAVRAGQAILRGTFVC 1198
E LI+ECN CSC R C NRV+Q+G++V+L++++T GW VRA Q I +GTF+C
Sbjct: 96 FNKIEPPLIFECNQACSCWRNCKNRVVQSGIKVRLQLYRTAKMGWGVRALQTIPQGTFIC 155
Query: 1199 EYIGEVLDELETNKRRSRYGRDGCGYMLNIGAHINDMGRLIEGQVRYVIDATKYGNVSRF 1258
EY+GE++ + E + R Y+ ++ +G+V Y IDA YGN+SRF
Sbjct: 156 EYVGELISDAEADVREDD------SYLFDLDNK--------DGEV-YCIDARYYGNISRF 200
Query: 1259 INHSCFPNLVNHQVLVESMDYQRAHIGLYASRDIAVGEELTYDY--HYELLSGEGYPCHC 1316
INH C PN++ +V + D + I ++SRDI GEEL +DY + + + + C C
Sbjct: 201 INHLCDPNIIPVRVFMLHQDLRFPRIAFFSSRDIRTGEELGFDYGDRFWDIKSKYFTCQC 260
Query: 1317 GASKCR 1322
G+ KC+
Sbjct: 261 GSEKCK 266
>pdb|2O8J|A Chain A, Human Euchromatic Histone Methyltransferase 2
pdb|2O8J|B Chain B, Human Euchromatic Histone Methyltransferase 2
pdb|2O8J|C Chain C, Human Euchromatic Histone Methyltransferase 2
pdb|2O8J|D Chain D, Human Euchromatic Histone Methyltransferase 2
Length = 281
Score = 155 bits (393), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 98/306 (32%), Positives = 158/306 (51%), Gaps = 57/306 (18%)
Query: 1024 VLCDDISSGLESVPVACVVDDGLLETLCISADSSDSQKTRCSMPWESFTYVTKPLLDQSL 1083
++C D++ G E+VP+ CV +G+ C E + Y+++ ++
Sbjct: 9 IICRDVARGYENVPIPCV--NGVDGEPCP----------------EDYKYISENCETSTM 50
Query: 1084 DLDAESLQLG-CACANSTCFPETCDHVYLFDNDYEDAKDIDGKSVHGRFPYDQTGRVILE 1142
++D L C C + C C + G+ + R YD+ GR++ E
Sbjct: 51 NIDRNITHLQHCTCVDD-CSSSNC---------------LCGQ-LSIRCWYDKDGRLLQE 93
Query: 1143 ----EGYLIYECNHMCSCDRTCPNRVLQNGVRVKLEVFKTENKGWAVRAGQAILRGTFVC 1198
E LI+ECN CSC R C NRV+Q+G++V+L++++T GW VRA Q I +GTF+C
Sbjct: 94 FNKIEPPLIFECNQACSCWRNCKNRVVQSGIKVRLQLYRTAKMGWGVRALQTIPQGTFIC 153
Query: 1199 EYIGEVLDELETNKRRSRYGRDGCGYMLNIGAHINDMGRLIEGQVRYVIDATKYGNVSRF 1258
EY+GE++ + E + R Y+ ++ +G+V Y IDA YGN+SRF
Sbjct: 154 EYVGELISDAEADVREDD------SYLFDLDNK--------DGEV-YCIDARYYGNISRF 198
Query: 1259 INHSCFPNLVNHQVLVESMDYQRAHIGLYASRDIAVGEELTYDY--HYELLSGEGYPCHC 1316
INH C PN++ +V + D + I ++SRDI GEEL +DY + + + + C C
Sbjct: 199 INHLCDPNIIPVRVFMLHQDLRFPRIAFFSSRDIRTGEELGFDYGDRFWDIKSKYFTCQC 258
Query: 1317 GASKCR 1322
G+ KC+
Sbjct: 259 GSEKCK 264
>pdb|3FPD|A Chain A, G9a-Like Protein Lysine Methyltransferase Inhibition By Bix-
01294
pdb|3FPD|B Chain B, G9a-Like Protein Lysine Methyltransferase Inhibition By Bix-
01294
Length = 261
Score = 155 bits (393), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 103/301 (34%), Positives = 156/301 (51%), Gaps = 55/301 (18%)
Query: 1028 DISSGLESVPVACVVDDGLLETLCISADSSDSQKTRCSMPWESFTYVTKPLLDQSLDLDA 1087
DI+ G E +P+ CV ++ DS+ + + S VT P+ ++D +
Sbjct: 8 DIARGYERIPIPCV-------------NAVDSEPCPSNYKYVSQNCVTSPM---NIDRNI 51
Query: 1088 ESLQLGCACANSTCFPETCDHVYLFDNDYEDAKDIDGKSVHGRFPYDQTGRVILE----E 1143
LQ C C + D + + G+ + R YD+ GR++ E E
Sbjct: 52 THLQY-CVCID----------------DCSSSNCMCGQ-LSMRCWYDKDGRLLPEFNMAE 93
Query: 1144 GYLIYECNHMCSCDRTCPNRVLQNGVRVKLEVFKTENKGWAVRAGQAILRGTFVCEYIGE 1203
LI+ECNH CSC R C NRV+QNG+R +L++++T + GW VR+ Q I GTFVCEY+GE
Sbjct: 94 PPLIFECNHACSCWRNCRNRVVQNGLRARLQLYRTRDMGWGVRSLQDIPPGTFVCEYVGE 153
Query: 1204 VLDELETNKRRSRYGRDGCGYMLNIGAHINDMGRLIEGQVRYVIDATKYGNVSRFINHSC 1263
++ + E + R Y+ ++ +G+V Y IDA YGNVSRFINH C
Sbjct: 154 LISDSEADVREED------SYLFDLDNK--------DGEV-YCIDARFYGNVSRFINHHC 198
Query: 1264 FPNLVNHQVLVESMDYQRAHIGLYASRDIAVGEELTYDY--HYELLSGEGYPCHCGASKC 1321
PNLV +V + D + I +++R I GE+L +DY + + G+ + C CG+ KC
Sbjct: 199 EPNLVPVRVFMAHQDLRFPRIAFFSTRLIEAGEQLGFDYGERFWDIKGKLFSCRCGSPKC 258
Query: 1322 R 1322
R
Sbjct: 259 R 259
>pdb|4I51|A Chain A, Methyltransferase Domain Of Human Euchromatic Histone
Methyltransferase 1, Mutant Y1211a
pdb|4I51|B Chain B, Methyltransferase Domain Of Human Euchromatic Histone
Methyltransferase 1, Mutant Y1211a
Length = 286
Score = 154 bits (388), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 102/301 (33%), Positives = 155/301 (51%), Gaps = 55/301 (18%)
Query: 1028 DISSGLESVPVACVVDDGLLETLCISADSSDSQKTRCSMPWESFTYVTKPLLDQSLDLDA 1087
DI+ G E +P+ CV ++ DS+ + + S VT P+ ++D +
Sbjct: 33 DIARGYERIPIPCV-------------NAVDSEPCPSNYKYVSQNCVTSPM---NIDRNI 76
Query: 1088 ESLQLGCACANSTCFPETCDHVYLFDNDYEDAKDIDGKSVHGRFPYDQTGRVILE----E 1143
LQ C C + D + + G+ + R YD+ GR++ E E
Sbjct: 77 THLQY-CVCID----------------DCSSSNCMCGQ-LSMRCWYDKDGRLLPEFNMAE 118
Query: 1144 GYLIYECNHMCSCDRTCPNRVLQNGVRVKLEVFKTENKGWAVRAGQAILRGTFVCEYIGE 1203
LI+ECNH CSC R C NRV+QNG+R +L++++T + GW VR+ Q I GTFVCEY+GE
Sbjct: 119 PPLIFECNHACSCWRNCRNRVVQNGLRARLQLYRTRDMGWGVRSLQDIPPGTFVCEYVGE 178
Query: 1204 VLDELETNKRRSRYGRDGCGYMLNIGAHINDMGRLIEGQVRYVIDATKYGNVSRFINHSC 1263
++ + E + R Y+ ++ +G+V Y IDA YGNVSRFINH C
Sbjct: 179 LISDSEADVREED------SYLFDLDNK--------DGEV-YCIDARFYGNVSRFINHHC 223
Query: 1264 FPNLVNHQVLVESMDYQRAHIGLYASRDIAVGEELTYDY--HYELLSGEGYPCHCGASKC 1321
PNLV +V + D + I +++R I GE+L +D + + G+ + C CG+ KC
Sbjct: 224 EPNLVPVRVFMAHQDLRFPRIAFFSTRLIEAGEQLGFDAGERFWDIKGKLFSCRCGSPKC 283
Query: 1322 R 1322
R
Sbjct: 284 R 284
>pdb|1MVH|A Chain A, Structure Of The Set Domain Histone Lysine Methyltransferase
Clr4
pdb|1MVX|A Chain A, Structure Of The Set Domain Histone Lysine Methyltransferase
Clr4
Length = 299
Score = 149 bits (375), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 90/274 (32%), Positives = 130/274 (47%), Gaps = 31/274 (11%)
Query: 1067 PWESFTYVTKPLLDQSLDLDAESLQLGCACANSTCFPETCDHVYLFDNDYEDAKDIDGKS 1126
P F ++++ L Q + + Q GC C++ CD N+ + +D
Sbjct: 42 PSLDFQFISQYRLTQGVIPPDPNFQSGCNCSSLG----GCDL-----NNPSRCECLDDLD 92
Query: 1127 VHGRFPYDQTGRVILEEGYLIYECNHMCSCDRTCPNRVLQNGVRVKLEVFKTENKGWAVR 1186
F YD GRV + G +IYECN CSC CPNRV+Q G + LE+FKT+ KGW VR
Sbjct: 93 EPTHFAYDAQGRVRADTGAVIYECNSFCSCSMECPNRVVQRGRTLPLEIFKTKEKGWGVR 152
Query: 1187 AGQAILRGTFVCEYIGEVLDELETNKRRSRYGRDGCGYMLNIGAHINDMGRLIEGQVRYV 1246
+ + GTF+ Y+GEV+ E KR Y DG Y+ ++ + + Y
Sbjct: 153 SLRFAPAGTFITCYLGEVITSAEAAKRDKNYDDDGITYLFDLD--------MFDDASEYT 204
Query: 1247 IDATKYGNVSRFINHSCFPNLVNHQVLVESMDYQRAHIGLYASRDIAVGEELTYDY---- 1302
+DA YG+VSRF NHSC PN+ + + + +A +DI EELT+DY
Sbjct: 205 VDAQNYGDVSRFFNHSCSPNIAIYSAVRNHGFRTIYDLAFFAIKDIQPLEELTFDYAGAK 264
Query: 1303 ----------HYELLSGEGYPCHCGASKCRGRLY 1326
+S C CG++ CRG L+
Sbjct: 265 DFSPVQSQKSQQNRISKLRRQCKCGSANCRGWLF 298
>pdb|2R3A|A Chain A, Methyltransferase Domain Of Human Suppressor Of Variegation
3-9 Homolog 2
Length = 300
Score = 139 bits (349), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 74/211 (35%), Positives = 109/211 (51%), Gaps = 31/211 (14%)
Query: 1133 YDQTGRVILEEGYLIYECNHMCSCDRTCPNRVLQNGVRVKLEVFKTEN-KGWAVRAGQAI 1191
Y++ ++ + G IYECN C C CPNR++Q G + L +F+T N +GW V+ I
Sbjct: 102 YNKNQQIKIPPGTPIYECNSRCQCGPDCPNRIVQKGTQYSLCIFRTSNGRGWGVKTLVKI 161
Query: 1192 LRGTFVCEYIGEVLDELETNKRRSRYGRDGCGYMLNIGAHINDMGRLIEGQVRYVIDATK 1251
R +FV EY+GEV+ E +R Y G Y+ ++ ++ + +DA +
Sbjct: 162 KRMSFVMEYVGEVITSEEAERRGQFYDNKGITYLFDLDYESDE----------FTVDAAR 211
Query: 1252 YGNVSRFINHSCFPNLVNHQVLVESMDYQRAHIGLYASRDIAVGEELTYDYHYELLSGEG 1311
YGNVS F+NHSC PNL V ++++D + I L+++R I GEELT+DY + G G
Sbjct: 212 YGNVSHFVNHSCDPNLQVFNVFIDNLDTRLPRIALFSTRTINAGEELTFDYQ---MKGSG 268
Query: 1312 -----------------YPCHCGASKCRGRL 1325
C CGA CRG L
Sbjct: 269 DISSDSIDHSPAKKRVRTVCKCGAVTCRGYL 299
>pdb|3BO5|A Chain A, Crystal Structure Of Methyltransferase Domain Of Human
Histone-Lysine N-Methyltransferase Setmar
Length = 290
Score = 137 bits (344), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 88/269 (32%), Positives = 130/269 (48%), Gaps = 35/269 (13%)
Query: 1071 FTYVTKPLLDQSLDLDAESLQL-GCACANSTCFPETCDHVYLFDNDYEDAKDIDGKSVHG 1129
F Y ++ D+D + GC C + C P TC + +N Y+D + G
Sbjct: 38 FQYTPDHVVGPGADIDPTQITFPGCICVKTPCLPGTCSCLRHGEN-YDDNSCLRDIGSGG 96
Query: 1130 RFPYDQTGRVILEEGYLIYECNHMCSCDRTCPNRVLQNGVRVKLEVFKTENKGWAVRAGQ 1189
++ ++ECN +C C C NRV+Q G++ +VFKT KGW +R +
Sbjct: 97 KY------------AEPVFECNVLCRCSDHCRNRVVQKGLQFHFQVFKTHKKGWGLRTLE 144
Query: 1190 AILRGTFVCEYIGEVLDELETNKRRSRYGRDGCGYMLNIGAHINDMGRLIEGQVRYVIDA 1249
I +G FVCEY GEVL E +R + Y++ I H+ + G+++E +D
Sbjct: 145 FIPKGRFVCEYAGEVLGFSEVQRRIHLQTKSDSNYIIAIREHVYN-GQVMET----FVDP 199
Query: 1250 TKYGNVSRFINHSCFPNLVNHQVLVESMDYQRAHIGLYASRDIAVGEELTYDYHYELL-- 1307
T GN+ RF+NHSC PNL+ V ++SM + L+A++DI EEL+YDY L
Sbjct: 200 TYIGNIGRFLNHSCEPNLLMIPVRIDSM---VPKLALFAAKDIVPEEELSYDYSGRYLNL 256
Query: 1308 ----SGEGY-------PCHCGASKCRGRL 1325
S E PC+CGA C L
Sbjct: 257 TVSASKERLDHGKLRKPCYCGAKSCTAFL 285
>pdb|1ML9|A Chain A, Structure Of The Neurospora Set Domain Protein Dim-5, A
Histone Lysine Methyltransferase
pdb|1PEG|A Chain A, Structural Basis For The Product Specificity Of Histone
Lysine Methyltransferases
pdb|1PEG|B Chain B, Structural Basis For The Product Specificity Of Histone
Lysine Methyltransferases
Length = 302
Score = 130 bits (327), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 82/280 (29%), Positives = 139/280 (49%), Gaps = 26/280 (9%)
Query: 1070 SFTYVTKPLLDQSLDLDAESLQLGCACA-NSTCFPETCDHVYLFDNDYEDAKDIDGKSVH 1128
+F ++ ++ +++ + +S ++GC+CA + C TC + D ++ + D +
Sbjct: 26 NFRFIDHSIIGKNVPVADQSFRVGCSCASDEECMYSTCQCLDEMAPDSDE--EADPYTRK 83
Query: 1129 GRFPYDQTGRV-------ILEEGYLIYECNHMCSCDRTCPNRVLQNGVRVKLEVFKTENK 1181
RF Y G +L+ IYEC+ C+C + CPNRV++ G V L++F+T+++
Sbjct: 84 KRFAYYSQGAKKGLLRDRVLQSQEPIYECHQGCACSKDCPNRVVERGRTVPLQIFRTKDR 143
Query: 1182 GWAVRAGQAILRGTFVCEYIGEVLDELETNKRRSRYG----RDGCGYMLNIGAHINDMGR 1237
GW V+ I RG FV Y+GE++ E ++RR+ +D + L+ + + +
Sbjct: 144 GWGVKCPVNIKRGQFVDRYLGEIITSEEADRRRAESTIARRKDVYLFALDKFSDPDSLDP 203
Query: 1238 LIEGQVRYVIDATKYGNVSRFINHSCFPNLVNHQVLVESMDYQRAHIGLYASRDIAVGEE 1297
L+ GQ +D +RFINHSC PN+ + + D + L+A +DI G E
Sbjct: 204 LLAGQP-LEVDGEYMSGPTRFINHSCDPNMAIFARVGDHADKHIHDLALFAIKDIPKGTE 262
Query: 1298 LTYDY-----------HYELLSGEGYPCHCGASKCRGRLY 1326
LT+DY H E C CG +KCRG L+
Sbjct: 263 LTFDYVNGLTGLESDAHDPSKISEMTKCLCGTAKCRGYLW 302
>pdb|4FMU|A Chain A, Crystal Structure Of Methyltransferase Domain Of Human Set
Domain- Containing Protein 2 Compound: Pr-Snf
pdb|4H12|A Chain A, The Crystal Structure Of Methyltransferase Domain Of Human
Set Domain- Containing Protein 2 In Complex With
S-Adenosyl-L-Homocysteine
Length = 278
Score = 111 bits (278), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 64/180 (35%), Positives = 89/180 (49%), Gaps = 15/180 (8%)
Query: 1146 LIYECNHMCSCDRTCPNRVLQNGVRVKLEVFKTENKGWAVRAGQAILRGTFVCEYIGEVL 1205
L+ EC+ C C NR Q +EV TE KGW +RA + + TFV EY GEVL
Sbjct: 92 LMIECSSRCPNGDYCSNRRFQRKQHADVEVILTEKKGWGLRAAKDLPSNTFVLEYCGEVL 151
Query: 1206 DELETNKRRSRYGRDGCGYMLNIGAHINDMGRLIEGQVRYVIDATKYGNVSRFINHSCFP 1265
D E R Y R+ NI + + + +IDAT+ GN SRF+NHSC P
Sbjct: 152 DHKEFKARVKEYARNK-----NIHYYFMAL------KNDEIIDATQKGNCSRFMNHSCEP 200
Query: 1266 NLVNHQVLVESMDYQRAHIGLYASRDIAVGEELTYDYHYELLSGEGYPCHCGASKCRGRL 1325
N + V + +G + ++ + G ELT+DY ++ E C CG++ CRG L
Sbjct: 201 NCETQKWTVNG----QLRVGFFTTKLVPSGSELTFDYQFQRYGKEAQKCFCGSANCRGYL 256
>pdb|3OPE|A Chain A, Structural Basis Of Auto-Inhibitory Mechanism Of Histone
Methyltransferase
pdb|3OPE|B Chain B, Structural Basis Of Auto-Inhibitory Mechanism Of Histone
Methyltransferase
Length = 222
Score = 100 bits (250), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 74/220 (33%), Positives = 110/220 (50%), Gaps = 27/220 (12%)
Query: 1114 NDYEDAKDIDG---KSVHGRFPYDQTGRVILEE---GYLIYECN-HMCSCDRTCPNRVLQ 1166
N Y D K + G + + + P D T + +++ + EC+ + C C C N+ +Q
Sbjct: 9 NVYVDVKPLSGYEATTCNCKKPDDDTRKGCVDDCLNRMIFAECSPNTCPCGEQCCNQRIQ 68
Query: 1167 NGVRVK-LEVFKTENKGWAVRAGQAILRGTFVCEYIGEVLDELE-TNKRRSRYGRDGCGY 1224
V+ LE F+ E KGW +R + + G F+ EY+GEV+ E E N+ +Y Y
Sbjct: 69 RHEWVQCLERFRAEEKGWGIRTKEPLKAGQFIIEYLGEVVSEQEFRNRMIEQYHNHSDHY 128
Query: 1225 MLNIGAHINDMGRLIEGQVRYVIDATKYGNVSRFINHSCFPNLVNHQVLVESMDYQRAHI 1284
LN+ + + VID+ + GN +RFINHSC PN + V + I
Sbjct: 129 CLNLDSGM-------------VIDSYRMGNEARFINHSCDPNCEMQKWSVNGV----YRI 171
Query: 1285 GLYASRDIAVGEELTYDYHYELLSGEGYP-CHCGASKCRG 1323
GLYA +D+ G ELTYDY++ + E C CG KCRG
Sbjct: 172 GLYALKDMPAGTELTYDYNFHSFNVEKQQLCKCGFEKCRG 211
>pdb|3OOI|A Chain A, Crystal Structure Of Human Histone-Lysine
N-Methyltransferase Nsd1 Set Domain In Complex With
S-Adenosyl-L-Methionine
Length = 232
Score = 97.1 bits (240), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 62/181 (34%), Positives = 90/181 (49%), Gaps = 16/181 (8%)
Query: 1146 LIYECN-HMCSCDRTCPNRVLQNGVRVKLEVFKTENKGWAVRAGQAILRGTFVCEYIGEV 1204
L+YEC+ +C C N+ ++E+F+T +GW +R I +G FV EY+GE+
Sbjct: 66 LLYECHPTVCPAGGRCQNQCFSKRQYPEVEIFRTLQRGWGLRTKTDIKKGEFVNEYVGEL 125
Query: 1205 LDELETNKRRSRYGRDGCGYMLNIGAHINDMGRLIEGQVRYVIDATKYGNVSRFINHSCF 1264
+DE E + R RY ++ I + L + R +IDA GN +RF+NH C
Sbjct: 126 IDEEEC-RARIRYAQE---------HDITNFYMLTLDKDR-IIDAGPKGNYARFMNHCCQ 174
Query: 1265 PNLVNHQVLVESMDYQRAHIGLYASRDIAVGEELTYDYHYELLSGEGYPCHCGASKCRGR 1324
PN + V +GL+A DI G ELT++Y+ E L C CGA C G
Sbjct: 175 PNCETQKWSVNG----DTRVGLFALSDIKAGTELTFNYNLECLGNGKTVCKCGAPNCSGF 230
Query: 1325 L 1325
L
Sbjct: 231 L 231
>pdb|2W5Y|A Chain A, Binary Complex Of The Mixed Lineage Leukaemia (Mll1) Set
Domain With The Cofactor Product S-Adenosylhomocysteine.
pdb|2W5Z|A Chain A, Ternary Complex Of The Mixed Lineage Leukaemia (Mll1) Set
Domain With The Cofactor Product S-Adenosylhomocysteine
And Histone Peptide
Length = 192
Score = 90.1 bits (222), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 82/165 (49%), Gaps = 19/165 (11%)
Query: 1163 RVLQNGVRVKLEVFKTENKGWAVRAGQAILRGTFVCEYIGEVLDELETNKRRSRYGRDGC 1222
R L+ + + V+++ G + + I G V EY G V+ ++T+KR Y G
Sbjct: 44 RHLKKTSKEAVGVYRSPIHGRGLFCKRNIDAGEMVIEYAGNVIRSIQTDKREKYYDSKGI 103
Query: 1223 G-YMLNIGAHINDMGRLIEGQVRYVIDATKYGNVSRFINHSCFPNLVNHQVLVESMDYQR 1281
G YM I V+DAT +GN +RFINHSC PN + + ++ +
Sbjct: 104 GCYMFRIDDS-------------EVVDATMHGNAARFINHSCEPNCYSRVINIDG----Q 146
Query: 1282 AHIGLYASRDIAVGEELTYDYHYELLSGEG-YPCHCGASKCRGRL 1325
HI ++A R I GEELTYDY + + PC+CGA KCR L
Sbjct: 147 KHIVIFAMRKIYRGEELTYDYKFPIEDASNKLPCNCGAKKCRKFL 191
>pdb|4IJ8|A Chain A, Crystal Structure Of The Complex Of Setd8 With Sam
pdb|4IJ8|B Chain B, Crystal Structure Of The Complex Of Setd8 With Sam
Length = 165
Score = 61.2 bits (147), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 78/154 (50%), Gaps = 19/154 (12%)
Query: 1153 MCSCDRTCPNRVLQNGVRVKLEVFKTENKGWAVRAGQAILRGTFVCEYIGEVLDELETNK 1212
+ S +R + ++++G +++ + KG V A + RG FV EY G++++ + K
Sbjct: 11 LQSEERKRIDELIESGKEEGMKIDLIDGKGRGVIATKQFSRGDFVVEYHGDLIEITDAKK 70
Query: 1213 RRSRYGRD---GCGYMLNIGAHINDMGRLIEGQVRYVIDATKYGN-VSRFINHSCFPNLV 1268
R + Y +D GC YM + + + Y +DAT+ N + R INHS N
Sbjct: 71 REALYAQDPSTGC-YMY----YFQYLSKT------YCVDATRETNRLGRLINHSKSGNC- 118
Query: 1269 NHQVLVESMDYQRAHIGLYASRDIAVGEELTYDY 1302
Q + +D H+ L ASRDIA GEEL YDY
Sbjct: 119 --QTKLHDID-GVPHLILIASRDIAAGEELLYDY 149
>pdb|1ZKK|A Chain A, Crystal Structure Of Hset8 In Ternary Complex With H4
Peptide (16-24) And Adohcy
pdb|1ZKK|B Chain B, Crystal Structure Of Hset8 In Ternary Complex With H4
Peptide (16-24) And Adohcy
pdb|1ZKK|C Chain C, Crystal Structure Of Hset8 In Ternary Complex With H4
Peptide (16-24) And Adohcy
pdb|1ZKK|D Chain D, Crystal Structure Of Hset8 In Ternary Complex With H4
Peptide (16-24) And Adohcy
Length = 167
Score = 60.8 bits (146), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 77/152 (50%), Gaps = 19/152 (12%)
Query: 1155 SCDRTCPNRVLQNGVRVKLEVFKTENKGWAVRAGQAILRGTFVCEYIGEVLDELETNKRR 1214
S +R + ++++G +++ + KG V A + RG FV EY G++++ + KR
Sbjct: 15 SEERKRIDELIESGKEEGMKIDLIDGKGRGVIATKQFSRGDFVVEYHGDLIEITDAKKRE 74
Query: 1215 SRYGRD---GCGYMLNIGAHINDMGRLIEGQVRYVIDATKYGN-VSRFINHSCFPNLVNH 1270
+ Y +D GC YM + + + Y +DAT+ N + R INHS N
Sbjct: 75 ALYAQDPSTGC-YMY----YFQYLSKT------YCVDATRETNRLGRLINHSKCGNC--- 120
Query: 1271 QVLVESMDYQRAHIGLYASRDIAVGEELTYDY 1302
Q + +D H+ L ASRDIA GEEL YDY
Sbjct: 121 QTKLHDID-GVPHLILIASRDIAAGEELLYDY 151
>pdb|2BQZ|A Chain A, Crystal Structure Of A Ternary Complex Of The Human Histone
Methyltransferase Pr-Set7 (Also Known As Set8)
pdb|2BQZ|E Chain E, Crystal Structure Of A Ternary Complex Of The Human Histone
Methyltransferase Pr-Set7 (Also Known As Set8)
Length = 161
Score = 60.5 bits (145), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 77/152 (50%), Gaps = 19/152 (12%)
Query: 1155 SCDRTCPNRVLQNGVRVKLEVFKTENKGWAVRAGQAILRGTFVCEYIGEVLDELETNKRR 1214
S +R + ++++G +++ + KG V A + RG FV EY G++++ + KR
Sbjct: 9 SEERKRIDELIESGKEEGMKIDLIDGKGRGVIATKQFSRGDFVVEYHGDLIEITDAKKRE 68
Query: 1215 SRYGRD---GCGYMLNIGAHINDMGRLIEGQVRYVIDATKYGN-VSRFINHSCFPNLVNH 1270
+ Y +D GC YM + + + Y +DAT+ N + R INHS N
Sbjct: 69 ALYAQDPSTGC-YMY----YFQYLSKT------YCVDATRETNRLGRLINHSKCGNC--- 114
Query: 1271 QVLVESMDYQRAHIGLYASRDIAVGEELTYDY 1302
Q + +D H+ L ASRDIA GEEL YDY
Sbjct: 115 QTKLHDID-GVPHLILIASRDIAAGEELLYDY 145
>pdb|3F9Z|A Chain A, Structural Insights Into Lysine Multiple Methylation By Set
Domain Methyltransferases, Set8-Y245f H4-Lys20 ADOHCY
pdb|3F9Z|B Chain B, Structural Insights Into Lysine Multiple Methylation By Set
Domain Methyltransferases, Set8-Y245f H4-Lys20 ADOHCY
pdb|3F9Z|C Chain C, Structural Insights Into Lysine Multiple Methylation By Set
Domain Methyltransferases, Set8-Y245f H4-Lys20 ADOHCY
pdb|3F9Z|D Chain D, Structural Insights Into Lysine Multiple Methylation By Set
Domain Methyltransferases, Set8-Y245f H4-Lys20 ADOHCY
Length = 166
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 77/152 (50%), Gaps = 19/152 (12%)
Query: 1155 SCDRTCPNRVLQNGVRVKLEVFKTENKGWAVRAGQAILRGTFVCEYIGEVLDELETNKRR 1214
S +R + ++++G +++ + KG V A + RG FV E+ G++++ + KR
Sbjct: 14 SEERKRIDELIESGKEEGMKIDLIDGKGRGVIATKQFSRGDFVVEFHGDLIEITDAKKRE 73
Query: 1215 SRYGRD---GCGYMLNIGAHINDMGRLIEGQVRYVIDATKYGN-VSRFINHSCFPNLVNH 1270
+ Y +D GC YM + + + Y +DAT+ N + R INHS N
Sbjct: 74 ALYAQDPSTGC-YMY----YFQYLSKT------YCVDATRETNRLGRLINHSKCGNC--- 119
Query: 1271 QVLVESMDYQRAHIGLYASRDIAVGEELTYDY 1302
Q + +D H+ L ASRDIA GEEL YDY
Sbjct: 120 QTKLHDID-GVPHLILIASRDIAAGEELLYDY 150
>pdb|3F9W|A Chain A, Structural Insights Into Lysine Multiple Methylation By Set
Domain Methyltransferases, Set8-Y334f H4-Lys20 ADOHCY
pdb|3F9W|B Chain B, Structural Insights Into Lysine Multiple Methylation By Set
Domain Methyltransferases, Set8-Y334f H4-Lys20 ADOHCY
pdb|3F9W|C Chain C, Structural Insights Into Lysine Multiple Methylation By Set
Domain Methyltransferases, Set8-Y334f H4-Lys20 ADOHCY
pdb|3F9W|D Chain D, Structural Insights Into Lysine Multiple Methylation By Set
Domain Methyltransferases, Set8-Y334f H4-Lys20 ADOHCY
pdb|3F9X|A Chain A, Structural Insights Into Lysine Multiple Methylation By Set
Domain Methyltransferases, Set8-Y334f H4-Lys20me2 Adohcy
pdb|3F9X|B Chain B, Structural Insights Into Lysine Multiple Methylation By Set
Domain Methyltransferases, Set8-Y334f H4-Lys20me2 Adohcy
pdb|3F9X|C Chain C, Structural Insights Into Lysine Multiple Methylation By Set
Domain Methyltransferases, Set8-Y334f H4-Lys20me2 Adohcy
pdb|3F9X|D Chain D, Structural Insights Into Lysine Multiple Methylation By Set
Domain Methyltransferases, Set8-Y334f H4-Lys20me2 Adohcy
pdb|3F9Y|A Chain A, Structural Insights Into Lysine Multiple Methylation By Set
Domain Methyltransferases, Set8-y334f / H4-lys20me1 /
Adohcy
pdb|3F9Y|B Chain B, Structural Insights Into Lysine Multiple Methylation By Set
Domain Methyltransferases, Set8-y334f / H4-lys20me1 /
Adohcy
Length = 166
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 77/152 (50%), Gaps = 19/152 (12%)
Query: 1155 SCDRTCPNRVLQNGVRVKLEVFKTENKGWAVRAGQAILRGTFVCEYIGEVLDELETNKRR 1214
S +R + ++++G +++ + KG V A + RG FV EY G++++ + KR
Sbjct: 14 SEERKRIDELIESGKEEGMKIDLIDGKGRGVIATKQFSRGDFVVEYHGDLIEITDAKKRE 73
Query: 1215 SRYGRD---GCGYMLNIGAHINDMGRLIEGQVRYVIDATKYGN-VSRFINHSCFPNLVNH 1270
+ Y +D GC YM + + + Y +DAT+ N + R INHS N
Sbjct: 74 ALYAQDPSTGC-YMY----YFQYLSKT------YCVDATRETNRLGRLINHSKCGNC--- 119
Query: 1271 QVLVESMDYQRAHIGLYASRDIAVGEELTYDY 1302
Q + +D H+ L ASRDIA GEEL +DY
Sbjct: 120 QTKLHDID-GVPHLILIASRDIAAGEELLFDY 150
>pdb|2DRP|A Chain A, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals
An Extension To The Rules For Zinc-FingerDNA RECOGNITION
pdb|2DRP|D Chain D, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals
An Extension To The Rules For Zinc-FingerDNA RECOGNITION
Length = 66
Score = 47.8 bits (112), Expect = 4e-05, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Query: 635 EDEKTHKCKICSQVFLHDQELGVHWMDNHKKEAQWLFRGYACAICLDSFTNKKVLESHVQ 694
E E T++CK+CS+V+ H H++ +HK+ + Y C C FT K + +HV+
Sbjct: 6 EGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNV----KVYPCPFCFKEFTRKDNMTAHVK 61
Query: 695 ERHHV 699
H +
Sbjct: 62 IIHKI 66
>pdb|3PDN|A Chain A, Crystal Structure Of Smyd3 In Complex With Methyltransferase
Inhibitor Sinefungin
pdb|3OXL|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With Adohcy
(Form Ii)
Length = 428
Score = 37.7 bits (86), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 32/59 (54%), Gaps = 9/59 (15%)
Query: 1252 YGNVSRFINHSCFPNLVNHQVLVESMDYQRAHIGLYASRDIAVGEELTYDYHYELLSGE 1310
Y ++S +NHSC PN S+ + H+ L A RDI VGEELT Y L++ E
Sbjct: 198 YPSIS-LLNHSCDPNC--------SIVFNGPHLLLRAVRDIEVGEELTICYLDMLMTSE 247
>pdb|3OXF|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With Adohcy
(Form I)
pdb|3OXF|B Chain B, Human Lysine Methyltransferase Smyd3 In Complex With Adohcy
(Form I)
Length = 436
Score = 37.7 bits (86), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 32/59 (54%), Gaps = 9/59 (15%)
Query: 1252 YGNVSRFINHSCFPNLVNHQVLVESMDYQRAHIGLYASRDIAVGEELTYDYHYELLSGE 1310
Y ++S +NHSC PN S+ + H+ L A RDI VGEELT Y L++ E
Sbjct: 198 YPSIS-LLNHSCDPNC--------SIVFNGPHLLLRAVRDIEVGEELTICYLDMLMTSE 247
>pdb|3RU0|A Chain A, Cocrystal Structure Of Human Smyd3 With Inhibitor Sinefungin
Bound
pdb|3RU0|B Chain B, Cocrystal Structure Of Human Smyd3 With Inhibitor Sinefungin
Bound
Length = 438
Score = 37.7 bits (86), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 32/59 (54%), Gaps = 9/59 (15%)
Query: 1252 YGNVSRFINHSCFPNLVNHQVLVESMDYQRAHIGLYASRDIAVGEELTYDYHYELLSGE 1310
Y ++S +NHSC PN S+ + H+ L A RDI VGEELT Y L++ E
Sbjct: 200 YPSIS-LLNHSCDPNC--------SIVFNGPHLLLRAVRDIEVGEELTICYLDMLMTSE 249
>pdb|3QWP|A Chain A, Crystal Structure Of Set And Mynd Domain Containing 3; Zinc
Finger Mynd Domain-Containing Protein 1
Length = 429
Score = 37.7 bits (86), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 32/59 (54%), Gaps = 9/59 (15%)
Query: 1252 YGNVSRFINHSCFPNLVNHQVLVESMDYQRAHIGLYASRDIAVGEELTYDYHYELLSGE 1310
Y ++S +NHSC PN S+ + H+ L A RDI VGEELT Y L++ E
Sbjct: 199 YPSIS-LLNHSCDPNC--------SIVFNGPHLLLRAVRDIEVGEELTICYLDMLMTSE 248
>pdb|3OXG|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With Adohcy
(Form Iii)
Length = 464
Score = 37.4 bits (85), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 32/59 (54%), Gaps = 9/59 (15%)
Query: 1252 YGNVSRFINHSCFPNLVNHQVLVESMDYQRAHIGLYASRDIAVGEELTYDYHYELLSGE 1310
Y ++S +NHSC PN S+ + H+ L A RDI VGEELT Y L++ E
Sbjct: 234 YPSIS-LLNHSCDPNC--------SIVFNGPHLLLRAVRDIEVGEELTICYLDMLMTSE 283
>pdb|3MEK|A Chain A, Crystal Structure Of Human Histone-Lysine N-
Methyltransferase Smyd3 In Complex With S-Adenosyl-L-
Methionine
Length = 429
Score = 36.6 bits (83), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 31/59 (52%), Gaps = 9/59 (15%)
Query: 1252 YGNVSRFINHSCFPNLVNHQVLVESMDYQRAHIGLYASRDIAVGEELTYDYHYELLSGE 1310
Y ++S +NHSC PN S+ + H+ L A RDI VGEELT Y L + E
Sbjct: 199 YPSIS-LLNHSCDPNC--------SIVFNGPHLLLRAVRDIEVGEELTICYLDXLXTSE 248
>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
Length = 190
Score = 33.9 bits (76), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 70/203 (34%), Gaps = 38/203 (18%)
Query: 616 SSSVVEDSAVLPLAIAGRSEDEKTHKCKICSQVFLHDQELGVHWMDNHKKEAQWLFRGYA 675
SSS V +A+ P EK + C C + F L H H E + Y
Sbjct: 6 SSSSVAQAALEP--------GEKPYACPECGKSFSRSDHLAEHQR-THTGE-----KPYK 51
Query: 676 CAICLDSFTNKKVLESHVQERHHVQFVEQCMLQQCIPCGSHFGNTEELWLHVQSVHAID- 734
C C SF++KK L H +R H +C CG F L H Q H +
Sbjct: 52 CPECGKSFSDKKDLTRH--QRTHTGE----KPYKCPECGKSFSQRANLRAH-QRTHTGEK 104
Query: 735 -FKMSEVAQQHNQ----------SVGEDSPKKLELGYSASVEN----HSENLGSIRKFIC 779
+ E + +Q GE K E G S S E+ H + + C
Sbjct: 105 PYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKC 164
Query: 780 RFCGLKFDLLPDLGRHHQAAHMG 802
CG F L HQ H G
Sbjct: 165 PECGKSFSRRDALNV-HQRTHTG 186
>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345 In
Zinc Finger Protein 278
Length = 95
Score = 33.5 bits (75), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 10/91 (10%)
Query: 642 CKICSQVFLHDQELGVHWMDNHKKEAQWLFRGYACAICLDSFTNKKVLESHVQERHHVQF 701
C+IC ++F L H + +H E + Y+C +C F K + HV R H
Sbjct: 10 CEICGKIFRDVYHLNRHKL-SHSGE-----KPYSCPVCGLRFKRKDRMSYHV--RSHDGS 61
Query: 702 VEQCMLQQCIPCGSHFGNTEELWLHVQSVHA 732
V + + C CG F + L H++ VH+
Sbjct: 62 VGKPYI--CQSCGKGFSRPDHLNGHIKQVHS 90
>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae,
Nmr, 25 Structures
Length = 60
Score = 32.0 bits (71), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 6/56 (10%)
Query: 642 CKICSQVFLHDQELGVHWMDNHKKEAQWLFRGYACAICLDSFTNKKVLESHVQERH 697
C++C++ F + L H+ +H E + Y C +C +FT + +L H Q+ H
Sbjct: 5 CEVCTRAFARQEHLKRHYR-SHTNE-----KPYPCGLCNRAFTRRDLLIRHAQKIH 54
>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
Repeats Of Murine Gli-Kruppel Family Member Hkr3
Length = 124
Score = 31.6 bits (70), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Query: 636 DEKTHKCKICSQVFLHDQELGVHWMDNHKKEAQWLFRGYACAICLDSFTNKKVLESHVQE 695
E+ C +C + F EL +H M +H E Y C+ C F KK L+SH+ +
Sbjct: 63 SEQVFTCSVCQETFRRRMELRLH-MVSHTGEMP-----YKCSSCSQQFMQKKDLQSHMIK 116
Query: 696 RH 697
H
Sbjct: 117 LH 118
>pdb|2ELX|A Chain A, Solution Structure Of The 8th C2h2 Zinc Finger Of Mouse
Zinc Finger Protein 406
Length = 35
Score = 31.6 bits (70), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 673 GYACAICLDSFTNKKVLESHVQERH 697
GY CA+CL F + L SH++E H
Sbjct: 7 GYVCALCLKKFVSSIRLRSHIREVH 31
>pdb|4IJD|A Chain A, Crystal Structure Of Methyltransferase Domain Of Human Pr
Domain- Containing Protein 9
pdb|4IJD|B Chain B, Crystal Structure Of Methyltransferase Domain Of Human Pr
Domain- Containing Protein 9
Length = 221
Score = 30.8 bits (68), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 10/57 (17%)
Query: 651 HDQELGVHWMDNHKKEAQWLFRG-------YACAICLDSFTNKKVLESHVQERHHVQ 700
+ QELG+ W KKE L G + C C +F+++K L HV+ H Q
Sbjct: 167 YGQELGIKWGSKWKKE---LXAGREPKPEIHPCPSCCLAFSSQKFLSQHVERNHSSQ 220
>pdb|3RQ0|A Chain A, The Crystal Structure Of A Glycosyl Hydrolases (Gh) Family
Protein 16 From Mycobacterium Smegmatis Str. Mc2 155
Length = 269
Score = 30.8 bits (68), Expect = 4.7, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 315 KKPLELGQ-RNRQCTAFIESKGRQCVRWANEGDVYCCVHLASRFTG 359
++P +GQ RN + F++ K +R A +GD Y LAS + G
Sbjct: 76 EQPGRIGQYRNDRRNVFLDGKSNLVIRAAKDGDTYYSAKLASVWEG 121
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,211,908
Number of Sequences: 62578
Number of extensions: 1703405
Number of successful extensions: 3303
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 3226
Number of HSP's gapped (non-prelim): 47
length of query: 1326
length of database: 14,973,337
effective HSP length: 110
effective length of query: 1216
effective length of database: 8,089,757
effective search space: 9837144512
effective search space used: 9837144512
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)