Query 000729
Match_columns 1326
No_of_seqs 946 out of 4976
Neff 6.1
Searched_HMMs 46136
Date Mon Apr 1 22:43:24 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000729.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000729hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1082 Histone H3 (Lys9) meth 100.0 3.3E-43 7.2E-48 412.9 17.0 274 1017-1326 53-354 (364)
2 KOG4442 Clathrin coat binding 100.0 7E-39 1.5E-43 379.1 12.5 163 1146-1325 93-259 (729)
3 KOG1141 Predicted histone meth 100.0 2.1E-38 4.5E-43 373.1 6.6 199 989-1211 620-839 (1262)
4 KOG1080 Histone H3 (Lys4) meth 99.9 7.1E-28 1.5E-32 303.9 10.7 137 1171-1325 866-1004(1005)
5 KOG1079 Transcriptional repres 99.9 1.8E-26 4E-31 272.3 10.0 132 1159-1307 582-713 (739)
6 KOG2462 C2H2-type Zn-finger pr 99.9 9E-24 1.9E-28 230.1 3.6 137 672-860 129-265 (279)
7 KOG2462 C2H2-type Zn-finger pr 99.9 1.3E-22 2.7E-27 221.2 5.5 140 635-832 126-265 (279)
8 smart00317 SET SET (Su(var)3-9 99.9 2.7E-21 5.9E-26 189.2 12.0 114 1172-1302 1-116 (116)
9 KOG1083 Putative transcription 99.8 1.1E-21 2.5E-26 238.9 2.1 131 1159-1306 1165-1297(1306)
10 KOG3608 Zn finger proteins [Ge 99.7 9.4E-19 2E-23 193.7 2.0 193 635-859 172-373 (467)
11 KOG1085 Predicted methyltransf 99.7 1.2E-17 2.7E-22 180.7 8.9 126 1166-1305 251-379 (392)
12 KOG3623 Homeobox transcription 99.7 5.8E-18 1.3E-22 200.5 2.8 81 776-863 894-974 (1007)
13 KOG1074 Transcriptional repres 99.7 1.4E-17 3E-22 201.1 5.9 218 637-863 603-932 (958)
14 KOG1074 Transcriptional repres 99.7 1.4E-17 3E-22 201.1 5.6 240 638-893 352-719 (958)
15 PF05033 Pre-SET: Pre-SET moti 99.7 6E-17 1.3E-21 157.9 7.7 102 1028-1163 1-103 (103)
16 KOG3608 Zn finger proteins [Ge 99.7 1.5E-17 3.3E-22 184.3 3.7 192 628-851 196-399 (467)
17 smart00468 PreSET N-terminal t 99.6 6.7E-16 1.5E-20 149.4 8.3 96 1026-1155 1-98 (98)
18 COG2940 Proteins containing SE 99.6 9.6E-16 2.1E-20 187.5 2.5 163 1148-1325 309-479 (480)
19 KOG3576 Ovo and related transc 99.4 1.8E-13 3.8E-18 142.8 4.1 128 631-801 109-236 (267)
20 KOG3576 Ovo and related transc 99.3 2.5E-13 5.4E-18 141.7 0.3 120 672-838 116-240 (267)
21 PF00856 SET: SET domain; Int 99.3 1.5E-12 3.3E-17 133.4 4.6 118 1182-1303 1-162 (162)
22 KOG3623 Homeobox transcription 99.2 8.7E-12 1.9E-16 148.9 2.0 54 774-833 279-332 (1007)
23 PLN03086 PRLI-interacting fact 98.8 7E-09 1.5E-13 126.6 6.3 139 674-859 408-561 (567)
24 KOG1081 Transcription factor N 98.7 3.3E-09 7.2E-14 128.5 2.0 145 1147-1325 289-436 (463)
25 PLN03086 PRLI-interacting fact 98.7 2.9E-08 6.4E-13 121.3 7.3 143 639-831 407-561 (567)
26 KOG2589 Histone tail methylase 98.6 1.6E-08 3.5E-13 114.3 4.2 117 1179-1318 135-252 (453)
27 PHA00733 hypothetical protein 98.6 2.1E-08 4.5E-13 101.9 3.2 86 706-835 39-124 (128)
28 KOG1141 Predicted histone meth 98.5 1.3E-07 2.7E-12 115.0 6.0 284 1020-1326 871-1262(1262)
29 PHA00733 hypothetical protein 98.4 2E-07 4.4E-12 94.8 3.8 83 636-732 37-124 (128)
30 KOG3993 Transcription factor ( 98.2 3.3E-07 7.2E-12 105.5 1.5 179 638-832 266-480 (500)
31 KOG3993 Transcription factor ( 98.1 9.5E-07 2.1E-11 101.9 2.7 171 674-861 268-481 (500)
32 PHA02768 hypothetical protein; 98.1 5E-07 1.1E-11 77.6 0.2 43 777-827 6-48 (55)
33 PHA02768 hypothetical protein; 98.1 1.5E-06 3.2E-11 74.7 2.5 45 810-856 5-49 (55)
34 KOG2461 Transcription factor B 97.9 9.6E-06 2.1E-10 96.7 5.8 114 1169-1306 26-146 (396)
35 PF13465 zf-H2C2_2: Zinc-finge 97.7 1.8E-05 3.9E-10 58.3 1.6 24 764-787 2-25 (26)
36 PF13465 zf-H2C2_2: Zinc-finge 97.4 7.7E-05 1.7E-09 55.0 2.1 25 791-821 1-25 (26)
37 PHA00732 hypothetical protein 97.4 9.8E-05 2.1E-09 69.0 3.1 47 776-834 1-48 (79)
38 PHA00616 hypothetical protein 97.4 3.7E-05 7.9E-10 63.3 -0.4 34 776-815 1-34 (44)
39 PHA00732 hypothetical protein 97.2 0.00018 4E-09 67.2 2.3 47 810-862 1-48 (79)
40 PHA00616 hypothetical protein 97.2 0.00013 2.9E-09 60.1 1.0 34 810-843 1-34 (44)
41 PF05605 zf-Di19: Drought indu 97.1 0.00039 8.5E-09 60.3 3.5 52 639-697 2-53 (54)
42 PF05605 zf-Di19: Drought indu 97.0 0.00042 9.2E-09 60.1 2.7 53 776-835 2-54 (54)
43 COG5189 SFP1 Putative transcri 96.6 0.001 2.3E-08 74.8 2.5 58 773-830 346-418 (423)
44 COG5189 SFP1 Putative transcri 96.2 0.0017 3.6E-08 73.3 1.2 67 637-726 347-417 (423)
45 PF00096 zf-C2H2: Zinc finger, 95.9 0.0047 1E-07 43.8 1.8 23 777-800 1-23 (23)
46 PF12756 zf-C2H2_2: C2H2 type 95.8 0.0052 1.1E-07 58.8 2.3 72 709-799 1-72 (100)
47 PF00096 zf-C2H2: Zinc finger, 95.7 0.0048 1E-07 43.7 1.3 20 675-694 2-21 (23)
48 PF12756 zf-C2H2_2: C2H2 type 95.7 0.0047 1E-07 59.1 1.6 73 641-730 1-73 (100)
49 PF13894 zf-C2H2_4: C2H2-type 95.0 0.013 2.8E-07 41.3 1.6 22 675-696 2-23 (24)
50 PF13912 zf-C2H2_6: C2H2-type 94.7 0.012 2.6E-07 43.4 0.7 18 777-794 2-19 (27)
51 KOG1146 Homeobox protein [Gene 94.6 0.012 2.6E-07 77.3 1.0 177 641-833 438-641 (1406)
52 PF13912 zf-C2H2_6: C2H2-type 94.5 0.018 3.9E-07 42.5 1.4 23 674-696 2-24 (27)
53 KOG2231 Predicted E3 ubiquitin 93.7 0.078 1.7E-06 66.8 5.4 23 709-731 184-206 (669)
54 smart00508 PostSET Cysteine-ri 93.5 0.034 7.3E-07 41.0 1.1 15 1311-1325 2-16 (26)
55 PF13894 zf-C2H2_4: C2H2-type 93.4 0.059 1.3E-06 37.9 2.2 18 777-794 1-18 (24)
56 KOG2231 Predicted E3 ubiquitin 93.0 0.094 2E-06 66.2 4.6 17 778-794 184-200 (669)
57 PF09237 GAGA: GAGA factor; I 92.7 0.036 7.7E-07 47.1 0.3 31 808-838 22-52 (54)
58 PRK04860 hypothetical protein; 91.7 0.1 2.3E-06 55.4 2.4 40 775-824 118-157 (160)
59 KOG1146 Homeobox protein [Gene 91.7 0.1 2.2E-06 69.2 2.6 157 676-859 439-639 (1406)
60 smart00355 ZnF_C2H2 zinc finge 91.3 0.14 3E-06 36.4 1.9 21 675-695 2-22 (26)
61 smart00355 ZnF_C2H2 zinc finge 91.2 0.14 3E-06 36.4 1.9 24 777-801 1-24 (26)
62 COG5048 FOG: Zn-finger [Genera 90.9 0.17 3.8E-06 60.2 3.5 159 638-846 288-454 (467)
63 PRK04860 hypothetical protein; 90.9 0.082 1.8E-06 56.2 0.6 39 809-851 118-156 (160)
64 PF09237 GAGA: GAGA factor; I 90.0 0.18 3.9E-06 43.0 1.7 28 672-699 23-50 (54)
65 cd01395 HMT_MBD Methyl-CpG bin 88.1 0.12 2.6E-06 46.0 -0.7 26 986-1011 22-48 (60)
66 PF12874 zf-met: Zinc-finger o 88.0 0.21 4.6E-06 36.0 0.8 21 675-695 2-22 (25)
67 PF11722 zf-TRM13_CCCH: CCCH z 86.8 0.2 4.4E-06 38.7 0.0 29 325-353 2-30 (31)
68 PF13909 zf-H2C2_5: C2H2-type 86.4 0.19 4.1E-06 36.1 -0.3 17 777-794 1-17 (24)
69 smart00570 AWS associated with 85.7 0.31 6.8E-06 42.0 0.7 24 1145-1168 26-49 (51)
70 PF13909 zf-H2C2_5: C2H2-type 84.4 0.54 1.2E-05 33.7 1.3 21 675-696 2-22 (24)
71 COG5048 FOG: Zn-finger [Genera 84.3 0.47 1E-05 56.5 1.6 59 635-699 29-89 (467)
72 COG5236 Uncharacterized conser 84.3 0.97 2.1E-05 52.3 3.9 140 639-802 151-307 (493)
73 PF12171 zf-C2H2_jaz: Zinc-fin 83.6 0.65 1.4E-05 34.4 1.5 22 811-832 2-23 (27)
74 PF12874 zf-met: Zinc-finger o 83.5 0.72 1.6E-05 33.2 1.7 18 777-794 1-18 (25)
75 PF12171 zf-C2H2_jaz: Zinc-fin 82.7 0.65 1.4E-05 34.4 1.2 22 674-695 2-23 (27)
76 KOG2785 C2H2-type Zn-finger pr 82.1 2 4.4E-05 50.8 5.4 27 775-802 165-191 (390)
77 COG5236 Uncharacterized conser 81.7 0.75 1.6E-05 53.1 1.8 130 673-859 151-302 (493)
78 KOG4173 Alpha-SNAP protein [In 80.6 0.43 9.4E-06 51.6 -0.6 87 637-732 77-171 (253)
79 KOG4173 Alpha-SNAP protein [In 79.4 0.72 1.6E-05 50.0 0.6 91 672-802 78-172 (253)
80 KOG2084 Predicted histone tail 79.0 2.3 4.9E-05 52.2 4.9 53 1258-1318 208-271 (482)
81 KOG2482 Predicted C2H2-type Zn 75.0 4.5 9.9E-05 47.1 5.3 25 777-801 280-304 (423)
82 COG4049 Uncharacterized protei 69.3 1.9 4.2E-05 37.5 0.6 35 631-665 9-43 (65)
83 KOG2893 Zn finger protein [Gen 67.7 2 4.2E-05 47.6 0.4 48 675-732 12-59 (341)
84 smart00451 ZnF_U1 U1-like zinc 64.8 3.7 8E-05 31.9 1.3 26 673-698 3-28 (35)
85 PF13913 zf-C2HC_2: zinc-finge 63.9 4.9 0.00011 29.6 1.7 18 675-693 4-21 (25)
86 KOG2785 C2H2-type Zn-finger pr 59.6 16 0.00035 43.6 5.9 60 639-698 3-93 (390)
87 KOG2482 Predicted C2H2-type Zn 58.9 8 0.00017 45.2 3.2 20 812-831 336-355 (423)
88 PF13913 zf-C2HC_2: zinc-finge 58.5 6.8 0.00015 28.8 1.7 17 777-794 3-19 (25)
89 KOG2893 Zn finger protein [Gen 58.3 3.6 7.8E-05 45.6 0.3 27 776-802 34-60 (341)
90 KOG1337 N-methyltransferase [G 57.1 7.7 0.00017 48.4 3.0 41 1258-1305 239-279 (472)
91 smart00451 ZnF_U1 U1-like zinc 52.5 11 0.00023 29.3 2.0 19 776-794 3-21 (35)
92 COG4049 Uncharacterized protei 51.6 6.9 0.00015 34.2 0.9 33 770-802 11-43 (65)
93 COG0068 HypF Hydrogenase matur 50.3 6.1 0.00013 50.5 0.5 55 735-790 102-165 (750)
94 KOG3813 Uncharacterized conser 46.2 9.6 0.00021 46.7 1.3 19 1091-1110 307-325 (640)
95 cd00350 rubredoxin_like Rubred 39.0 20 0.00043 28.1 1.6 9 837-845 16-24 (33)
96 TIGR02098 MJ0042_CXXC MJ0042 f 38.2 16 0.00035 29.2 1.1 15 777-791 3-17 (38)
97 COG2888 Predicted Zn-ribbon RN 36.0 19 0.00041 32.2 1.2 33 775-818 26-58 (61)
98 PF09986 DUF2225: Uncharacteri 35.7 13 0.00028 41.6 0.2 49 672-720 4-61 (214)
99 PF13891 zf-C3Hc3H: Potential 34.0 13 0.00029 33.6 -0.0 24 379-402 3-26 (65)
100 PF09538 FYDLN_acid: Protein o 33.4 22 0.00047 35.7 1.3 30 777-823 10-39 (108)
101 TIGR00622 ssl1 transcription f 33.1 49 0.0011 33.4 3.7 82 775-861 14-104 (112)
102 PF12013 DUF3505: Protein of u 32.5 53 0.0011 32.6 3.9 25 810-834 80-108 (109)
103 PF11722 zf-TRM13_CCCH: CCCH z 32.5 25 0.00055 27.4 1.2 21 381-401 11-31 (31)
104 TIGR00373 conserved hypothetic 31.9 32 0.00069 36.7 2.4 37 768-819 101-137 (158)
105 PRK00464 nrdR transcriptional 31.4 19 0.0004 38.4 0.5 17 673-689 28-44 (154)
106 PF09538 FYDLN_acid: Protein o 31.1 27 0.00058 35.1 1.5 14 673-686 26-39 (108)
107 smart00834 CxxC_CXXC_SSSS Puta 31.0 16 0.00035 29.4 -0.0 12 777-788 6-17 (41)
108 smart00531 TFIIE Transcription 30.5 38 0.00082 35.6 2.6 38 773-820 96-133 (147)
109 cd00729 rubredoxin_SM Rubredox 30.3 34 0.00073 27.2 1.6 10 777-786 3-12 (34)
110 COG1198 PriA Primosomal protei 29.9 27 0.00058 45.8 1.7 47 903-950 602-649 (730)
111 COG1996 RPC10 DNA-directed RNA 29.5 27 0.0006 30.1 1.1 29 775-819 5-33 (49)
112 PF09723 Zn-ribbon_8: Zinc rib 29.5 17 0.00036 30.1 -0.2 12 777-788 6-17 (42)
113 TIGR02605 CxxC_CxxC_SSSS putat 28.5 20 0.00044 30.6 0.2 11 777-787 6-16 (52)
114 PF09986 DUF2225: Uncharacteri 28.4 26 0.00057 39.2 1.1 42 808-849 3-59 (214)
115 PF14353 CpXC: CpXC protein 28.2 37 0.0008 34.7 2.0 25 809-833 37-61 (128)
116 PHA00626 hypothetical protein 28.1 20 0.00044 31.5 0.1 13 810-822 23-35 (59)
117 PRK06266 transcription initiat 27.5 39 0.00085 36.8 2.2 19 774-792 115-133 (178)
118 KOG2461 Transcription factor B 26.6 87 0.0019 38.4 5.1 79 761-845 316-394 (396)
119 PF14353 CpXC: CpXC protein 26.3 24 0.00052 36.0 0.3 20 775-794 37-56 (128)
120 PF13717 zinc_ribbon_4: zinc-r 26.0 47 0.001 26.7 1.8 14 778-791 4-17 (36)
121 TIGR00622 ssl1 transcription f 26.0 70 0.0015 32.4 3.4 85 637-732 13-105 (112)
122 COG2888 Predicted Zn-ribbon RN 25.9 45 0.00097 29.9 1.8 34 749-784 24-58 (61)
123 smart00391 MBD Methyl-CpG bind 25.8 28 0.0006 32.8 0.6 26 986-1011 26-52 (77)
124 PF02892 zf-BED: BED zinc fing 25.4 57 0.0012 26.9 2.3 28 773-800 13-44 (45)
125 PF08879 WRC: WRC; InterPro: 25.1 25 0.00055 29.9 0.1 20 381-400 13-32 (46)
126 COG1997 RPL43A Ribosomal prote 24.9 28 0.00061 33.4 0.4 13 810-822 53-65 (89)
127 PRK14890 putative Zn-ribbon RN 24.6 48 0.001 29.7 1.8 32 775-818 24-56 (59)
128 PF02892 zf-BED: BED zinc fing 24.1 45 0.00097 27.5 1.5 28 636-663 13-44 (45)
129 PF08666 SAF: SAF domain; Int 23.6 47 0.001 29.1 1.6 16 1285-1300 3-18 (63)
130 TIGR00373 conserved hypothetic 23.4 44 0.00096 35.7 1.6 35 634-683 104-138 (158)
131 PF12013 DUF3505: Protein of u 22.9 74 0.0016 31.6 3.0 24 708-731 81-108 (109)
132 smart00531 TFIIE Transcription 22.7 50 0.0011 34.7 1.8 38 749-786 96-133 (147)
133 PF13719 zinc_ribbon_5: zinc-r 22.5 53 0.0012 26.5 1.5 12 809-820 24-35 (37)
134 PRK00464 nrdR transcriptional 22.5 38 0.00082 36.1 0.9 15 811-825 29-43 (154)
135 PRK06266 transcription initiat 22.5 46 0.00099 36.3 1.5 34 636-684 114-147 (178)
136 PF03604 DNA_RNApol_7kD: DNA d 22.1 46 0.001 26.2 1.1 11 777-787 1-11 (32)
137 KOG2186 Cell growth-regulating 21.6 53 0.0012 37.4 1.8 30 763-794 17-46 (276)
138 TIGR02300 FYDLN_acid conserved 21.4 56 0.0012 33.7 1.7 36 776-828 9-44 (129)
139 KOG2186 Cell growth-regulating 20.9 50 0.0011 37.6 1.4 48 640-696 4-51 (276)
140 PF09845 DUF2072: Zn-ribbon co 20.6 49 0.0011 34.2 1.2 15 776-790 1-15 (131)
141 KOG1081 Transcription factor N 20.2 28 0.0006 43.5 -0.8 130 1179-1323 121-261 (463)
No 1
>KOG1082 consensus Histone H3 (Lys9) methyltransferase SUV39H1/Clr4, required for transcriptional silencing [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=3.3e-43 Score=412.91 Aligned_cols=274 Identities=34% Similarity=0.532 Sum_probs=214.2
Q ss_pred cccCCCceeeecCCCCCCCCCeeEeeCCCccccccccCCCCCcccccCCCCCCCcEEcccCCCCCCCCCcccCCCCCccc
Q 000729 1017 KPLLRGTVLCDDISSGLESVPVACVVDDGLLETLCISADSSDSQKTRCSMPWESFTYVTKPLLDQSLDLDAESLQLGCAC 1096 (1326)
Q Consensus 1017 ~~~~~~~~~~~DiS~G~E~vPV~~vnd~d~~~~~~~~g~~~~~~~~~~~~P~~~F~Yi~~~~~~~~~~~d~~~~~~gC~C 1096 (1326)
..+.+...+..||+.|.|++||+.+|++|.. .| ..|+|++..++.++. ........||.|
T Consensus 53 ~~~~~~~~~~~d~~~~~e~~~v~~~n~id~~------------------~~-~~f~y~~~~~~~~~~-~~~~~~~~~c~C 112 (364)
T KOG1082|consen 53 KDKLEAKSELEDIALGSENLPVPLVNRIDED------------------AP-LYFQYIATEIVDPGE-LSDCENSTGCRC 112 (364)
T ss_pred ccccccccccccccCccccCceeeeeeccCC------------------cc-ccceeccccccCccc-cccCccccCCCc
Confidence 3445667889999999999999999999863 12 579999999888752 222345679999
Q ss_pred CCCCcCCCC---CCcccccccccccccccCCCCcCCCcccCCCCc--eeecCCceEEecCCCCCCCCCCCCcccccCcee
Q 000729 1097 ANSTCFPET---CDHVYLFDNDYEDAKDIDGKSVHGRFPYDQTGR--VILEEGYLIYECNHMCSCDRTCPNRVLQNGVRV 1171 (1326)
Q Consensus 1097 ~~~~C~~~~---C~C~~l~~~~y~~~~~~~g~~~~~~~~Yd~~G~--l~~~~~~~i~EC~~~C~C~~~C~NRv~Q~g~~~ 1171 (1326)
.+ .|.... |.|.. .+.+.++|..+|. .....+.+||||++.|+|++.|.|||+|.|++.
T Consensus 113 ~~-~~~~~~~~~C~C~~---------------~n~~~~~~~~~~~~~~~~~~~~~i~EC~~~C~C~~~C~nRv~q~g~~~ 176 (364)
T KOG1082|consen 113 CS-SCSSVLPLTCLCER---------------HNGGLVAYTCDGDCGTLGKFKEPVFECSVACGCHPDCANRVVQKGLQF 176 (364)
T ss_pred cC-CCCCCCCccccChH---------------hhCCccccccCCccccccccCccccccccCCCCCCcCcchhhcccccc
Confidence 86 344322 66643 2345567776663 334556799999999999999999999999999
Q ss_pred eEEEEecCCCCccccccccccCCCeEEEeeeEEecHHHHHHhhccccC----CCcceEEecCccccc--------ccccc
Q 000729 1172 KLEVFKTENKGWAVRAGQAILRGTFVCEYIGEVLDELETNKRRSRYGR----DGCGYMLNIGAHIND--------MGRLI 1239 (1326)
Q Consensus 1172 ~leVf~t~~kGwGVrA~e~I~~GtfI~EY~Gevit~~ea~~r~~~y~~----~~~~Ylf~l~~~~~~--------~~~~~ 1239 (1326)
+|+||+|+.+|||||++++|++|+|||||+||+++..+++.|...+.. .+..+.+..+..... .....
T Consensus 177 ~leIfrt~~kGwgvRs~~~I~~G~fvcEyaGe~~t~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (364)
T KOG1082|consen 177 HLEVFRTPEKGWGVRTLDPIPAGEFVCEYAGEVLTSEEAQRRTHLREYLDDDCDAYSIADREWVDESPVGNTFVAPSLPG 256 (364)
T ss_pred ceEEEecCCceeeecccccccCCCeeEEEeeEecChHHhhhccccccccccccccchhhhcccccccccccccccccccc
Confidence 999999999999999999999999999999999999999987543221 111222222211100 00111
Q ss_pred cCceeEEEeccccCCccccccCCCCCCceEEEEEEecccCceeEEEEEEccCCCCCCeEEEecCCCCC-----------C
Q 000729 1240 EGQVRYVIDATKYGNVSRFINHSCFPNLVNHQVLVESMDYQRAHIGLYASRDIAVGEELTYDYHYELL-----------S 1308 (1326)
Q Consensus 1240 ~~~~~~~IDA~~~GNvaRFINHSC~PN~~~~~V~v~~~d~~~~~I~~fA~RdI~~GEELT~DYg~~~~-----------~ 1308 (1326)
.....++|||+.+||++|||||||.||+.++.|+.++.++..++|+|||++||+||||||||||..+. .
T Consensus 257 ~~~~~~~ida~~~GNv~RfinHSC~PN~~~~~v~~~~~~~~~~~i~ffa~~~I~p~~ELT~dYg~~~~~~~~~~~~~~~~ 336 (364)
T KOG1082|consen 257 GPGRELLIDAKPHGNVARFINHSCSPNLLYQAVFQDEFVLLYLRIGFFALRDISPGEELTLDYGKAYKLLVQDGANIYTP 336 (364)
T ss_pred CCCcceEEchhhcccccccccCCCCccceeeeeeecCCccchheeeeeeccccCCCcccchhhccccccccccccccccc
Confidence 22468999999999999999999999999999999999999999999999999999999999997753 1
Q ss_pred CCCceeecCCCCCccccC
Q 000729 1309 GEGYPCHCGASKCRGRLY 1326 (1326)
Q Consensus 1309 ~~~~~C~CGs~~CRg~l~ 1326 (1326)
.....|.||+.+||++++
T Consensus 337 ~~~~~c~c~~~~cr~~~~ 354 (364)
T KOG1082|consen 337 VMKKNCNCGLEKCRGLLG 354 (364)
T ss_pred ccchhhcCCCHHhCcccC
Confidence 246789999999999874
No 2
>KOG4442 consensus Clathrin coat binding protein/Huntingtin interacting protein HIP1, involved in regulation of endocytosis [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7e-39 Score=379.13 Aligned_cols=163 Identities=42% Similarity=0.780 Sum_probs=152.6
Q ss_pred eEEecCC-CCC-CCCCCCCcccccCceeeEEEEecCCCCccccccccccCCCeEEEeeeEEecHHHHHHhhccccCCC--
Q 000729 1146 LIYECNH-MCS-CDRTCPNRVLQNGVRVKLEVFKTENKGWAVRAGQAILRGTFVCEYIGEVLDELETNKRRSRYGRDG-- 1221 (1326)
Q Consensus 1146 ~i~EC~~-~C~-C~~~C~NRv~Q~g~~~~leVf~t~~kGwGVrA~e~I~~GtfI~EY~Gevit~~ea~~r~~~y~~~~-- 1221 (1326)
...||++ .|. |+..|.|+.+|+....+++||.|+.+||||||.++|++|+||+||.||||+..|.++|...|..++
T Consensus 93 t~iECs~~~C~~cg~~C~NQRFQkkqyA~vevF~Te~KG~GLRA~~dI~~g~FI~EY~GEVI~~~Ef~kR~~~Y~~d~~k 172 (729)
T KOG4442|consen 93 TSIECSDRECPRCGVYCKNQRFQKKQYAKVEVFLTEKKGCGLRAEEDIPKGQFILEYIGEVIEEKEFEKRVKRYAKDGIK 172 (729)
T ss_pred hhcccCCccCCCccccccchhhhhhccCceeEEEecCcccceeeccccCCCcEEeeeccccccHHHHHHHHHHHHhcCCc
Confidence 3579998 999 999999999999999999999999999999999999999999999999999999999999987654
Q ss_pred cceEEecCcccccccccccCceeEEEeccccCCccccccCCCCCCceEEEEEEecccCceeEEEEEEccCCCCCCeEEEe
Q 000729 1222 CGYMLNIGAHINDMGRLIEGQVRYVIDATKYGNVSRFINHSCFPNLVNHQVLVESMDYQRAHIGLYASRDIAVGEELTYD 1301 (1326)
Q Consensus 1222 ~~Ylf~l~~~~~~~~~~~~~~~~~~IDA~~~GNvaRFINHSC~PN~~~~~V~v~~~d~~~~~I~~fA~RdI~~GEELT~D 1301 (1326)
+.|+|.+.. .++|||+.+||.||||||||+|||.++.|.|. +..+|+|||.|+|++|||||||
T Consensus 173 h~Yfm~L~~-------------~e~IDAT~KGnlaRFiNHSC~PNa~~~KWtV~----~~lRvGiFakk~I~~GEEITFD 235 (729)
T KOG4442|consen 173 HYYFMALQG-------------GEYIDATKKGNLARFINHSCDPNAEVQKWTVP----DELRVGIFAKKVIKPGEEITFD 235 (729)
T ss_pred eEEEEEecC-------------CceecccccCcHHHhhcCCCCCCceeeeeeeC----CeeEEEEeEecccCCCceeeEe
Confidence 456666544 68999999999999999999999999999998 6899999999999999999999
Q ss_pred cCCCCCCCCCceeecCCCCCcccc
Q 000729 1302 YHYELLSGEGYPCHCGASKCRGRL 1325 (1326)
Q Consensus 1302 Yg~~~~~~~~~~C~CGs~~CRg~l 1325 (1326)
|+++..+.+..+|+||+++|||||
T Consensus 236 Yqf~rYGr~AQ~CyCgeanC~G~I 259 (729)
T KOG4442|consen 236 YQFDRYGRDAQPCYCGEANCRGWI 259 (729)
T ss_pred cccccccccccccccCCccccccc
Confidence 999998889999999999999997
No 3
>KOG1141 consensus Predicted histone methyl transferase [Chromatin structure and dynamics]
Probab=100.00 E-value=2.1e-38 Score=373.15 Aligned_cols=199 Identities=23% Similarity=0.337 Sum_probs=143.4
Q ss_pred ccccCCCcCCc-cccccce-eeecCcc-------c---------cccccCCCceeeecCCCCCCCCCeeEeeCCCccccc
Q 000729 989 SSDSSDFVNNQ-WEVDECH-CIIDSRH-------L---------GRKPLLRGTVLCDDISSGLESVPVACVVDDGLLETL 1050 (1326)
Q Consensus 989 ~v~~~~p~~~~-w~~~e~~-~~~~~~~-------~---------~~~~~~~~~~~~~DiS~G~E~vPV~~vnd~d~~~~~ 1050 (1326)
-|.|..|||.. +.|.|+- |+++.+. | +..++.++++.|-||++|+|.+||.++|+.|..
T Consensus 620 hv~yktpcg~~lr~~~el~ryL~et~c~flf~~~f~~~~yV~~~r~~~p~kp~~~~~Di~~g~e~vpis~~neids~--- 696 (1262)
T KOG1141|consen 620 HVEYKTPCGMPLRMRIELYRYLVETRCKFLFVIGFDRAFYVVRHRAPNPLKPGNRCTDIPCGREHVPISEKNEIDSH--- 696 (1262)
T ss_pred eeeccCCCccchHHHHHHHHHHHHhcCcEEEEeecccchheeecccCCCcCCcceeccccCCccccccceeecccCc---
Confidence 47788999988 7777754 4444432 1 223456788999999999999999999999852
Q ss_pred cccCCCCCcccccCCCCCCCcEEcccCCCCCCCCC-cccCCCCCcccCCCCcCCCCCCcccccccccccccccCCC-CcC
Q 000729 1051 CISADSSDSQKTRCSMPWESFTYVTKPLLDQSLDL-DAESLQLGCACANSTCFPETCDHVYLFDNDYEDAKDIDGK-SVH 1128 (1326)
Q Consensus 1051 ~~~g~~~~~~~~~~~~P~~~F~Yi~~~~~~~~~~~-d~~~~~~gC~C~~~~C~~~~C~C~~l~~~~y~~~~~~~g~-~~~ 1128 (1326)
|++.|.|-...+...+.=. -...+.++|+|.+|+-+...|.|.++....-.. .-++. ...
T Consensus 697 ----------------~lpq~ay~K~~ip~~~nl~n~~~~fl~scdc~~gcid~~kcachQltvk~~~t--~p~~~v~~t 758 (1262)
T KOG1141|consen 697 ----------------RLPQAAYKKHMIPTNNNLSNRRKDFLQSCDCPTGCIDSMKCACHQLTVKKKTT--GPNQNVAST 758 (1262)
T ss_pred ----------------CCccchhheeeccCCCcccccChhhhhcCCCCcchhhhhhhhHHHHHHHhhcc--CCCcccccC
Confidence 3357888877766554211 124678999999876566789998764321100 00010 001
Q ss_pred CCcccCCCCceeecCCceEEecCCCCCCCC-CCCCcccccCceeeEEEEecCCCCccccccccccCCCeEEEeeeEEecH
Q 000729 1129 GRFPYDQTGRVILEEGYLIYECNHMCSCDR-TCPNRVLQNGVRVKLEVFKTENKGWAVRAGQAILRGTFVCEYIGEVLDE 1207 (1326)
Q Consensus 1129 ~~~~Yd~~G~l~~~~~~~i~EC~~~C~C~~-~C~NRv~Q~g~~~~leVf~t~~kGwGVrA~e~I~~GtfI~EY~Gevit~ 1207 (1326)
..+.|. |++-.....+|||+..|+|.+ -|.||++|+|.+++|++|+|..+|||+|..++|.+|.|||.|.|-+++.
T Consensus 759 ~gykyK---Rl~e~~ptg~yEc~k~ckc~~~~C~nrmvqhg~qvRlq~fkt~~kGWg~rclddi~~g~fVciy~g~~l~~ 835 (1262)
T KOG1141|consen 759 NGYKYK---RLIEIRPTGPYECLKACKCCGPDCLNRMVQHGYQVRLQRFKTIHKGWGRRCLDDITGGNFVCIYPGGALLH 835 (1262)
T ss_pred cchhhH---HHHHhcCCCHHHHHHhhccCcHHHHHHHhhcCceeEeeeccccccccceEeeeecCCceEEEEecchhhhh
Confidence 122332 333333457999999999986 5999999999999999999999999999999999999999999999875
Q ss_pred HHHH
Q 000729 1208 LETN 1211 (1326)
Q Consensus 1208 ~ea~ 1211 (1326)
.-++
T Consensus 836 ~~sd 839 (1262)
T KOG1141|consen 836 QISD 839 (1262)
T ss_pred hhch
Confidence 5444
No 4
>KOG1080 consensus Histone H3 (Lys4) methyltransferase complex, subunit SET1 and related methyltransferases [Chromatin structure and dynamics; Transcription]
Probab=99.94 E-value=7.1e-28 Score=303.94 Aligned_cols=137 Identities=42% Similarity=0.738 Sum_probs=125.9
Q ss_pred eeEEEEecCCCCccccccccccCCCeEEEeeeEEecHHHHHHhhccccCC--CcceEEecCcccccccccccCceeEEEe
Q 000729 1171 VKLEVFKTENKGWAVRAGQAILRGTFVCEYIGEVLDELETNKRRSRYGRD--GCGYMLNIGAHINDMGRLIEGQVRYVID 1248 (1326)
Q Consensus 1171 ~~leVf~t~~kGwGVrA~e~I~~GtfI~EY~Gevit~~ea~~r~~~y~~~--~~~Ylf~l~~~~~~~~~~~~~~~~~~ID 1248 (1326)
..|...++..+||||||+++|.+|++|+||+||++...-|+.|+.+|... +.+|+|.+|. .++||
T Consensus 866 k~~~F~~s~iH~wglfa~~~i~~~dmViEY~Ge~vR~~iad~RE~~Y~~~gi~~sYlfrid~-------------~~ViD 932 (1005)
T KOG1080|consen 866 KYVKFGRSGIHGWGLFAMENIAAGDMVIEYRGELVRSSIADLREARYERMGIGDSYLFRIDD-------------EVVVD 932 (1005)
T ss_pred hhhccccccccccceeeccCccccceEEEeeceehhhhHHHHHHHHHhccCcccceeeeccc-------------ceEEe
Confidence 34777889999999999999999999999999999999999999888765 5889999986 58999
Q ss_pred ccccCCccccccCCCCCCceEEEEEEecccCceeEEEEEEccCCCCCCeEEEecCCCCCCCCCceeecCCCCCcccc
Q 000729 1249 ATKYGNVSRFINHSCFPNLVNHQVLVESMDYQRAHIGLYASRDIAVGEELTYDYHYELLSGEGYPCHCGASKCRGRL 1325 (1326)
Q Consensus 1249 A~~~GNvaRFINHSC~PN~~~~~V~v~~~d~~~~~I~~fA~RdI~~GEELT~DYg~~~~~~~~~~C~CGs~~CRg~l 1325 (1326)
|+..||+||||||||+|||.+..+.|+ +.-+|+|||.|||.+||||||||.+.... ...+|+|||++|||+|
T Consensus 933 Atk~gniAr~InHsC~PNCyakvi~V~----g~~~IvIyakr~I~~~EElTYDYkF~~e~-~kipClCgap~Crg~~ 1004 (1005)
T KOG1080|consen 933 ATKKGNIARFINHSCNPNCYAKVITVE----GDKRIVIYSKRDIAAGEELTYDYKFPTED-DKIPCLCGAPNCRGFL 1004 (1005)
T ss_pred ccccCchhheeecccCCCceeeEEEec----CeeEEEEEEecccccCceeeeeccccccc-cccccccCCCcccccc
Confidence 999999999999999999999999999 66799999999999999999999987643 3899999999999987
No 5
>KOG1079 consensus Transcriptional repressor EZH1 [Transcription]
Probab=99.93 E-value=1.8e-26 Score=272.27 Aligned_cols=132 Identities=34% Similarity=0.659 Sum_probs=126.7
Q ss_pred CCCCcccccCceeeEEEEecCCCCccccccccccCCCeEEEeeeEEecHHHHHHhhccccCCCcceEEecCccccccccc
Q 000729 1159 TCPNRVLQNGVRVKLEVFKTENKGWAVRAGQAILRGTFVCEYIGEVLDELETNKRRSRYGRDGCGYMLNIGAHINDMGRL 1238 (1326)
Q Consensus 1159 ~C~NRv~Q~g~~~~leVf~t~~kGwGVrA~e~I~~GtfI~EY~Gevit~~ea~~r~~~y~~~~~~Ylf~l~~~~~~~~~~ 1238 (1326)
+|.|--+|+|.+.++.+..+...|||+|+.+.+.+++||.||+||+|+.+||++|+..|+....+|+|++..
T Consensus 582 ~C~N~~l~~~~qkr~llapSdVaGwGlFlKe~v~KnefisEY~GE~IS~dEADrRGkiYDr~~cSflFnln~-------- 653 (739)
T KOG1079|consen 582 SCKNTNLQRGEQKRVLLAPSDVAGWGLFLKESVSKNEFISEYTGEIISHDEADRRGKIYDRYMCSFLFNLNN-------- 653 (739)
T ss_pred ccccchhhhhhhcceeechhhccccceeeccccCCCceeeeecceeccchhhhhcccccccccceeeeeccc--------
Confidence 799999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred ccCceeEEEeccccCCccccccCCCCCCceEEEEEEecccCceeEEEEEEccCCCCCCeEEEecCCCCC
Q 000729 1239 IEGQVRYVIDATKYGNVSRFINHSCFPNLVNHQVLVESMDYQRAHIGLYASRDIAVGEELTYDYHYELL 1307 (1326)
Q Consensus 1239 ~~~~~~~~IDA~~~GNvaRFINHSC~PN~~~~~V~v~~~d~~~~~I~~fA~RdI~~GEELT~DYg~~~~ 1307 (1326)
.|+|||++.||.+||+|||=+|||.+..+.|. +..+|+|||.|+|.+||||||||+|+-.
T Consensus 654 -----dyviDs~rkGnk~rFANHS~nPNCYAkvm~V~----GdhRIGifAkRaIeagEELffDYrYs~~ 713 (739)
T KOG1079|consen 654 -----DYVIDSTRKGNKIRFANHSFNPNCYAKVMMVA----GDHRIGIFAKRAIEAGEELFFDYRYSPE 713 (739)
T ss_pred -----cceEeeeeecchhhhccCCCCCCcEEEEEEec----CCcceeeeehhhcccCceeeeeeccCcc
Confidence 59999999999999999999999999988888 7889999999999999999999999753
No 6
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=99.88 E-value=9e-24 Score=230.05 Aligned_cols=137 Identities=18% Similarity=0.211 Sum_probs=107.9
Q ss_pred CccccCccccccCChhHHHhHhhhccccccccccccccccCCCCccCChhHHhhhhhhcccCcccchhhhhhcccccCCC
Q 000729 672 RGYACAICLDSFTNKKVLESHVQERHHVQFVEQCMLQQCIPCGSHFGNTEELWLHVQSVHAIDFKMSEVAQQHNQSVGED 751 (1326)
Q Consensus 672 kpy~C~~CgKsF~sks~L~~H~r~Hh~e~~~~~~kpfkC~~Cgk~F~sks~L~~Hv~r~H~~ef~C~~C~k~f~~~~~ek 751 (1326)
..|+|+.|||.+.+.++|.+|.++|..-.. .+.+.|+.|+|.|.+...|+.| .++|+
T Consensus 129 ~r~~c~eCgk~ysT~snLsrHkQ~H~~~~s---~ka~~C~~C~K~YvSmpALkMH-irTH~------------------- 185 (279)
T KOG2462|consen 129 PRYKCPECGKSYSTSSNLSRHKQTHRSLDS---KKAFSCKYCGKVYVSMPALKMH-IRTHT------------------- 185 (279)
T ss_pred Cceeccccccccccccccchhhcccccccc---cccccCCCCCceeeehHHHhhH-hhccC-------------------
Confidence 346666666666666666666666655432 1667788888888888888888 55554
Q ss_pred CCccccCCCchhhhhhhhhcCCcceeeecccCCccCChhHHHHHHHhhccCCCCCCCCCcccCcCCcccCCchhhhcccc
Q 000729 752 SPKKLELGYSASVENHSENLGSIRKFICRFCGLKFDLLPDLGRHHQAAHMGPNLVNSRPHKKGIRFYAYKLKSGRLSRPR 831 (1326)
Q Consensus 752 p~~C~~Cgk~~sL~~Hlr~HtgeKpfkC~~CgKsF~sks~L~rHH~r~Htg~~~~~ekpykC~~C~ksF~~ks~L~~H~r 831 (1326)
-+++|.+|||.|.+..-|+. |+|+||| ||||.|+.|+|+|..+++|+.||+
T Consensus 186 -----------------------l~c~C~iCGKaFSRPWLLQG-HiRTHTG-----EKPF~C~hC~kAFADRSNLRAHmQ 236 (279)
T KOG2462|consen 186 -----------------------LPCECGICGKAFSRPWLLQG-HIRTHTG-----EKPFSCPHCGKAFADRSNLRAHMQ 236 (279)
T ss_pred -----------------------CCcccccccccccchHHhhc-ccccccC-----CCCccCCcccchhcchHHHHHHHH
Confidence 56788888888888888888 8888888 888888888888888888888888
Q ss_pred cccCCCcccCCCCCccCCChHHHHhhccc
Q 000729 832 FKKGLGAVSYRIRNRGAAGMKKRIQTLKP 860 (1326)
Q Consensus 832 ~H~gekpy~C~~Cgk~Fs~~~~L~kH~ks 860 (1326)
+|.+.|+|+|..|+|+|+.++.|.+|..+
T Consensus 237 THS~~K~~qC~~C~KsFsl~SyLnKH~ES 265 (279)
T KOG2462|consen 237 THSDVKKHQCPRCGKSFALKSYLNKHSES 265 (279)
T ss_pred hhcCCccccCcchhhHHHHHHHHHHhhhh
Confidence 88888888888888888888888888874
No 7
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=99.86 E-value=1.3e-22 Score=221.17 Aligned_cols=140 Identities=20% Similarity=0.352 Sum_probs=126.2
Q ss_pred cCCCcccCCCCCcccCChhhHhhhhhhccCccccccCCccccCccccccCChhHHHhHhhhccccccccccccccccCCC
Q 000729 635 EDEKTHKCKICSQVFLHDQELGVHWMDNHKKEAQWLFRGYACAICLDSFTNKKVLESHVQERHHVQFVEQCMLQQCIPCG 714 (1326)
Q Consensus 635 ~~ekpfkC~~CgK~F~~~s~L~~H~~~~Ht~e~~~~~kpy~C~~CgKsF~sks~L~~H~r~Hh~e~~~~~~kpfkC~~Cg 714 (1326)
.....|+|+.|||.+.+.++|.+| +.+|..-.. .+.+.|++|+|.|.+...|+.|+++|+ .+++|.+||
T Consensus 126 ~~~~r~~c~eCgk~ysT~snLsrH-kQ~H~~~~s--~ka~~C~~C~K~YvSmpALkMHirTH~--------l~c~C~iCG 194 (279)
T KOG2462|consen 126 AKHPRYKCPECGKSYSTSSNLSRH-KQTHRSLDS--KKAFSCKYCGKVYVSMPALKMHIRTHT--------LPCECGICG 194 (279)
T ss_pred ccCCceeccccccccccccccchh-hcccccccc--cccccCCCCCceeeehHHHhhHhhccC--------CCccccccc
Confidence 345679999999999999999999 999976422 378999999999999999999999997 357799999
Q ss_pred CccCChhHHhhhhhhcccCcccchhhhhhcccccCCCCCccccCCCchhhhhhhhhcCCcceeeecccCCccCChhHHHH
Q 000729 715 SHFGNTEELWLHVQSVHAIDFKMSEVAQQHNQSVGEDSPKKLELGYSASVENHSENLGSIRKFICRFCGLKFDLLPDLGR 794 (1326)
Q Consensus 715 k~F~sks~L~~Hv~r~H~~ef~C~~C~k~f~~~~~ekp~~C~~Cgk~~sL~~Hlr~HtgeKpfkC~~CgKsF~sks~L~r 794 (1326)
|.|....-|+-| +|+|+|||||.|+.|+|.|..+++|+.
T Consensus 195 KaFSRPWLLQGH-----------------------------------------iRTHTGEKPF~C~hC~kAFADRSNLRA 233 (279)
T KOG2462|consen 195 KAFSRPWLLQGH-----------------------------------------IRTHTGEKPFSCPHCGKAFADRSNLRA 233 (279)
T ss_pred ccccchHHhhcc-----------------------------------------cccccCCCCccCCcccchhcchHHHHH
Confidence 999987777766 678889999999999999999999999
Q ss_pred HHHhhccCCCCCCCCCcccCcCCcccCCchhhhccccc
Q 000729 795 HHQAAHMGPNLVNSRPHKKGIRFYAYKLKSGRLSRPRF 832 (1326)
Q Consensus 795 HH~r~Htg~~~~~ekpykC~~C~ksF~~ks~L~~H~r~ 832 (1326)
|+++|.+ .|+|+|..|+|+|..++.|.+|...
T Consensus 234 -HmQTHS~-----~K~~qC~~C~KsFsl~SyLnKH~ES 265 (279)
T KOG2462|consen 234 -HMQTHSD-----VKKHQCPRCGKSFALKSYLNKHSES 265 (279)
T ss_pred -HHHhhcC-----CccccCcchhhHHHHHHHHHHhhhh
Confidence 9999999 8999999999999999999999753
No 8
>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain. Putative methyl transferase, based on outlier plant homologues
Probab=99.85 E-value=2.7e-21 Score=189.24 Aligned_cols=114 Identities=47% Similarity=0.790 Sum_probs=96.8
Q ss_pred eEEEEecCCCCccccccccccCCCeEEEeeeEEecHHHHHHhhccccCCC--cceEEecCcccccccccccCceeEEEec
Q 000729 1172 KLEVFKTENKGWAVRAGQAILRGTFVCEYIGEVLDELETNKRRSRYGRDG--CGYMLNIGAHINDMGRLIEGQVRYVIDA 1249 (1326)
Q Consensus 1172 ~leVf~t~~kGwGVrA~e~I~~GtfI~EY~Gevit~~ea~~r~~~y~~~~--~~Ylf~l~~~~~~~~~~~~~~~~~~IDA 1249 (1326)
++++++++.+|+||+|+++|++|++|++|.|.++...++..+...+.... ..|+|.... .++||+
T Consensus 1 ~~~~~~~~~~G~gl~a~~~i~~g~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~id~ 67 (116)
T smart00317 1 KLEVFKSPGKGWGVRATEDIPKGEFIGEYVGEIITSEEAEERSKAYDTDGADSFYLFEIDS-------------DLCIDA 67 (116)
T ss_pred CcEEEecCCCcEEEEECCccCCCCEEEEEEeEEECHHHHHHHHHHHHhcCCCCEEEEECCC-------------CEEEeC
Confidence 36788999999999999999999999999999999888877643222222 367777643 579999
Q ss_pred cccCCccccccCCCCCCceEEEEEEecccCceeEEEEEEccCCCCCCeEEEec
Q 000729 1250 TKYGNVSRFINHSCFPNLVNHQVLVESMDYQRAHIGLYASRDIAVGEELTYDY 1302 (1326)
Q Consensus 1250 ~~~GNvaRFINHSC~PN~~~~~V~v~~~d~~~~~I~~fA~RdI~~GEELT~DY 1302 (1326)
+..||++|||||||.||+.+..+..+ +..++.|+|+|||++|||||+||
T Consensus 68 ~~~~~~~~~iNHsc~pN~~~~~~~~~----~~~~~~~~a~r~I~~GeEi~i~Y 116 (116)
T smart00317 68 RRKGNIARFINHSCEPNCELLFVEVN----GDSRIVIFALRDIKPGEELTIDY 116 (116)
T ss_pred CccCcHHHeeCCCCCCCEEEEEEEEC----CCcEEEEEECCCcCCCCEEeecC
Confidence 99999999999999999999887775 34489999999999999999999
No 9
>KOG1083 consensus Putative transcription factor ASH1/LIN-59 [Transcription]
Probab=99.83 E-value=1.1e-21 Score=238.91 Aligned_cols=131 Identities=43% Similarity=0.714 Sum_probs=117.1
Q ss_pred CCCCccccc-CceeeEEEEecCCCCccccccccccCCCeEEEeeeEEecHHHHHHh-hccccCCCcceEEecCccccccc
Q 000729 1159 TCPNRVLQN-GVRVKLEVFKTENKGWAVRAGQAILRGTFVCEYIGEVLDELETNKR-RSRYGRDGCGYMLNIGAHINDMG 1236 (1326)
Q Consensus 1159 ~C~NRv~Q~-g~~~~leVf~t~~kGwGVrA~e~I~~GtfI~EY~Gevit~~ea~~r-~~~y~~~~~~Ylf~l~~~~~~~~ 1236 (1326)
+|.|+.+|+ +.-.+|+||+.+.+||||+|.++|++|+||+||+|||++..+.+.+ ...|-.+.+.|+..++.
T Consensus 1165 ~c~nqrm~r~e~cp~L~v~~gp~~G~~v~tk~PikagtfI~EYvGeVit~ke~e~~mmtl~~~d~~~~cL~I~p------ 1238 (1306)
T KOG1083|consen 1165 SCSNQRMQRHEECPPLEVFRGPKKGWGVRTKEPIKAGTFIMEYVGEVITEKEFEPRMMTLYHNDDDHYCLVIDP------ 1238 (1306)
T ss_pred hhhhHHhhhhccCCCcceeccCCCCccccccccccccchHHHHHHHHHHHHhhcccccccCCCCCcccccccCc------
Confidence 377776664 6778899999999999999999999999999999999999998877 34466677778887765
Q ss_pred ccccCceeEEEeccccCCccccccCCCCCCceEEEEEEecccCceeEEEEEEccCCCCCCeEEEecCCCC
Q 000729 1237 RLIEGQVRYVIDATKYGNVSRFINHSCFPNLVNHQVLVESMDYQRAHIGLYASRDIAVGEELTYDYHYEL 1306 (1326)
Q Consensus 1237 ~~~~~~~~~~IDA~~~GNvaRFINHSC~PN~~~~~V~v~~~d~~~~~I~~fA~RdI~~GEELT~DYg~~~ 1306 (1326)
..+||+.++||.+|||||||.|||..+.|.++ +..||++||+|||.+||||||||+...
T Consensus 1239 -------~l~id~~R~~n~~RfinhscKPNc~~qkwSVN----G~~Rv~L~A~rDi~kGEELtYDYN~ks 1297 (1306)
T KOG1083|consen 1239 -------GLFIDIPRMGNGARFINHSCKPNCEMQKWSVN----GEYRVGLFALRDLPKGEELTYDYNFKS 1297 (1306)
T ss_pred -------cccCChhhccccccccccccCCCCcccccccc----ceeeeeeeecCCCCCCceEEEeccccc
Confidence 57999999999999999999999999999999 899999999999999999999998653
No 10
>KOG3608 consensus Zn finger proteins [General function prediction only]
Probab=99.72 E-value=9.4e-19 Score=193.74 Aligned_cols=193 Identities=20% Similarity=0.240 Sum_probs=165.9
Q ss_pred cCCCc-ccCC--CCCcccCChhhHhhhhhhccCccccccCCccccCccccccCChhHHHhHhhhcccccccccccccccc
Q 000729 635 EDEKT-HKCK--ICSQVFLHDQELGVHWMDNHKKEAQWLFRGYACAICLDSFTNKKVLESHVQERHHVQFVEQCMLQQCI 711 (1326)
Q Consensus 635 ~~ekp-fkC~--~CgK~F~~~s~L~~H~~~~Ht~e~~~~~kpy~C~~CgKsF~sks~L~~H~r~Hh~e~~~~~~kpfkC~ 711 (1326)
.+++| +.|. -|-+.|.+++.|++| .++|+++ |...|+.||.-|.++..|.-|.+..+.-.. .+|+|.
T Consensus 172 ~D~~pv~~C~W~~Ct~~~~~k~~LreH-~r~Hs~e-----KvvACp~Cg~~F~~~tkl~DH~rRqt~l~~----n~fqC~ 241 (467)
T KOG3608|consen 172 EDERPVTMCNWAMCTKHMGNKYRLREH-IRTHSNE-----KVVACPHCGELFRTKTKLFDHLRRQTELNT----NSFQCA 241 (467)
T ss_pred CCCCceeeccchhhhhhhccHHHHHHH-HHhcCCC-----eEEecchHHHHhccccHHHHHHHhhhhhcC----CchHHH
Confidence 34433 6776 599999999999999 8999999 999999999999999999999987665432 589999
Q ss_pred CCCCccCChhHHhhhhhhcccCcccchhhhhhcccccCCCCCccccCCCchhhhhhhh-hcCCcceeeecccCCccCChh
Q 000729 712 PCGSHFGNTEELWLHVQSVHAIDFKMSEVAQQHNQSVGEDSPKKLELGYSASVENHSE-NLGSIRKFICRFCGLKFDLLP 790 (1326)
Q Consensus 712 ~Cgk~F~sks~L~~Hv~r~H~~ef~C~~C~k~f~~~~~ekp~~C~~Cgk~~sL~~Hlr-~HtgeKpfkC~~CgKsF~sks 790 (1326)
.|.|.|.++..|..| .+.|-.-|+|+.|... |+-.++|..|++ .|...|||+|+.|.+.|.+.+
T Consensus 242 ~C~KrFaTeklL~~H-v~rHvn~ykCplCdmt--------------c~~~ssL~~H~r~rHs~dkpfKCd~Cd~~c~~es 306 (467)
T KOG3608|consen 242 QCFKRFATEKLLKSH-VVRHVNCYKCPLCDMT--------------CSSASSLTTHIRYRHSKDKPFKCDECDTRCVRES 306 (467)
T ss_pred HHHHHHhHHHHHHHH-HHHhhhcccccccccC--------------CCChHHHHHHHHhhhccCCCccccchhhhhccHH
Confidence 999999999999999 6677655555555433 456678999997 588899999999999999999
Q ss_pred HHHHHHHhhccCCCCCCCCCcccCc--CCcccCCchhhhccccccc-CC--CcccCCCCCccCCChHHHHhhcc
Q 000729 791 DLGRHHQAAHMGPNLVNSRPHKKGI--RFYAYKLKSGRLSRPRFKK-GL--GAVSYRIRNRGAAGMKKRIQTLK 859 (1326)
Q Consensus 791 ~L~rHH~r~Htg~~~~~ekpykC~~--C~ksF~~ks~L~~H~r~H~-ge--kpy~C~~Cgk~Fs~~~~L~kH~k 859 (1326)
+|.+ |..+|.. -.|+|+. |..+|+....+++|++.|+ |. -+|+|..|++.|.+-.+|..|++
T Consensus 307 dL~k-H~~~HS~------~~y~C~h~~C~~s~r~~~q~~~H~~evhEg~np~~Y~CH~Cdr~ft~G~~L~~HL~ 373 (467)
T KOG3608|consen 307 DLAK-HVQVHSK------TVYQCEHPDCHYSVRTYTQMRRHFLEVHEGNNPILYACHCCDRFFTSGKSLSAHLM 373 (467)
T ss_pred HHHH-HHHhccc------cceecCCCCCcHHHHHHHHHHHHHHHhccCCCCCceeeecchhhhccchhHHHHHH
Confidence 9999 7779985 4799999 9999999999999997655 55 56999999999999999999976
No 11
>KOG1085 consensus Predicted methyltransferase (contains a SET domain) [General function prediction only]
Probab=99.71 E-value=1.2e-17 Score=180.70 Aligned_cols=126 Identities=38% Similarity=0.513 Sum_probs=108.8
Q ss_pred ccCceeeEEEEecCCCCccccccccccCCCeEEEeeeEEecHHHHHHhhccccCC--CcceEEecCcccccccccccCce
Q 000729 1166 QNGVRVKLEVFKTENKGWAVRAGQAILRGTFVCEYIGEVLDELETNKRRSRYGRD--GCGYMLNIGAHINDMGRLIEGQV 1243 (1326)
Q Consensus 1166 Q~g~~~~leVf~t~~kGwGVrA~e~I~~GtfI~EY~Gevit~~ea~~r~~~y~~~--~~~Ylf~l~~~~~~~~~~~~~~~ 1243 (1326)
..|....|.+..-.+||.||+|...+.+|+||.||.|.+|...||..|++.|..+ -..|+|.+... ..
T Consensus 251 l~g~~egl~~~~~dgKGRGv~a~~~F~rgdFVVEY~Gdliei~eAk~rE~~Ya~De~~GcYMYyF~h~----------sk 320 (392)
T KOG1085|consen 251 LKGTNEGLLEVYKDGKGRGVRAKVNFERGDFVVEYRGDLIEISEAKVREEQYANDEEIGCYMYYFEHN----------SK 320 (392)
T ss_pred HhccccceeEEeeccccceeEeecccccCceEEEEecceeeechHHHHHHHhccCcccceEEEeeecc----------Ce
Confidence 4455666777776779999999999999999999999999999999999888654 34577766542 24
Q ss_pred eEEEeccc-cCCccccccCCCCCCceEEEEEEecccCceeEEEEEEccCCCCCCeEEEecCCC
Q 000729 1244 RYVIDATK-YGNVSRFINHSCFPNLVNHQVLVESMDYQRAHIGLYASRDIAVGEELTYDYHYE 1305 (1326)
Q Consensus 1244 ~~~IDA~~-~GNvaRFINHSC~PN~~~~~V~v~~~d~~~~~I~~fA~RdI~~GEELT~DYg~~ 1305 (1326)
.|||||+. .+-++|.||||=.+||....|.++ +.||+.+.|.|||.+||||+||||+.
T Consensus 321 ~yCiDAT~et~~lGRLINHS~~gNl~TKvv~Id----g~pHLiLvA~rdIa~GEELlYDYGDR 379 (392)
T KOG1085|consen 321 KYCIDATKETPWLGRLINHSVRGNLKTKVVEID----GSPHLILVARRDIAQGEELLYDYGDR 379 (392)
T ss_pred eeeeecccccccchhhhcccccCcceeeEEEec----CCceEEEEeccccccchhhhhhcccc
Confidence 79999997 566899999999999999999999 89999999999999999999999975
No 12
>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]
Probab=99.69 E-value=5.8e-18 Score=200.46 Aligned_cols=81 Identities=21% Similarity=0.235 Sum_probs=77.6
Q ss_pred eeeecccCCccCChhHHHHHHHhhccCCCCCCCCCcccCcCCcccCCchhhhcccccccCCCcccCCCCCccCCChHHHH
Q 000729 776 KFICRFCGLKFDLLPDLGRHHQAAHMGPNLVNSRPHKKGIRFYAYKLKSGRLSRPRFKKGLGAVSYRIRNRGAAGMKKRI 855 (1326)
Q Consensus 776 pfkC~~CgKsF~sks~L~rHH~r~Htg~~~~~ekpykC~~C~ksF~~ks~L~~H~r~H~gekpy~C~~Cgk~Fs~~~~L~ 855 (1326)
+|.|+.|.|.|...+.|.| |.--|+| .|||+|.+|.|+|+.+..|..|+|.|.|+|||+|+.|+|+|+...+..
T Consensus 894 myaCDqCDK~FqKqSSLaR-HKYEHsG-----qRPyqC~iCkKAFKHKHHLtEHkRLHSGEKPfQCdKClKRFSHSGSYS 967 (1007)
T KOG3623|consen 894 MYACDQCDKAFQKQSSLAR-HKYEHSG-----QRPYQCIICKKAFKHKHHLTEHKRLHSGEKPFQCDKCLKRFSHSGSYS 967 (1007)
T ss_pred cchHHHHHHHHHhhHHHHH-hhhhhcC-----CCCcccchhhHhhhhhhhhhhhhhhccCCCcchhhhhhhhcccccchH
Confidence 4899999999999999999 8999999 999999999999999999999999999999999999999999999999
Q ss_pred hhccccCC
Q 000729 856 QTLKPLAS 863 (1326)
Q Consensus 856 kH~ksH~~ 863 (1326)
+|+. |..
T Consensus 968 QHMN-HRY 974 (1007)
T KOG3623|consen 968 QHMN-HRY 974 (1007)
T ss_pred hhhc-cch
Confidence 9998 754
No 13
>KOG1074 consensus Transcriptional repressor SALM [Transcription]
Probab=99.69 E-value=1.4e-17 Score=201.09 Aligned_cols=218 Identities=17% Similarity=0.184 Sum_probs=152.8
Q ss_pred CCcccCCCCCcccCChhhHhhhhhhccCccccccCCccccCccccccCChhHHHhHhhhcccccccccccccccc---CC
Q 000729 637 EKTHKCKICSQVFLHDQELGVHWMDNHKKEAQWLFRGYACAICLDSFTNKKVLESHVQERHHVQFVEQCMLQQCI---PC 713 (1326)
Q Consensus 637 ekpfkC~~CgK~F~~~s~L~~H~~~~Ht~e~~~~~kpy~C~~CgKsF~sks~L~~H~r~Hh~e~~~~~~kpfkC~---~C 713 (1326)
-.|-+|-+|-++...++.|+.| .++|++| |||+|.+||+.|.++.+|+.||-.|....+.. -+|.|+ +|
T Consensus 603 TdPNqCiiC~rVlSC~saLqmH-yrtHtGE-----RPFkCKiCgRAFtTkGNLkaH~~vHka~p~~R--~q~ScP~~~ic 674 (958)
T KOG1074|consen 603 TDPNQCIICLRVLSCPSALQMH-YRTHTGE-----RPFKCKICGRAFTTKGNLKAHMSVHKAKPPAR--VQFSCPSTFIC 674 (958)
T ss_pred CCccceeeeeecccchhhhhhh-hhcccCc-----CccccccccchhccccchhhcccccccCcccc--ccccCCchhhh
Confidence 4578999999999999999999 8999999 99999999999999999999999998876655 678999 99
Q ss_pred CCccCChhHHhhhhhhcccCc---------------ccchhhhhhcccccCC--------------------------C-
Q 000729 714 GSHFGNTEELWLHVQSVHAID---------------FKMSEVAQQHNQSVGE--------------------------D- 751 (1326)
Q Consensus 714 gk~F~sks~L~~Hv~r~H~~e---------------f~C~~C~k~f~~~~~e--------------------------k- 751 (1326)
-+.|.+.-.|.+| .+.|.+. -.|..|.+.|...... .
T Consensus 675 ~~kftn~V~lpQh-IriH~~~~~s~g~~a~e~~~~adq~~~~qk~~~~a~~f~~~~se~~~~~s~~~~~~~~~t~t~~~~ 753 (958)
T KOG1074|consen 675 QKKFTNAVTLPQH-IRIHLGGQISNGGTAAEGILAADQCSSCQKTFSDARSFSQQISEQPSPESEPDEQMDERTETEELD 753 (958)
T ss_pred cccccccccccce-EEeecCCCCCCCcccccccchhcccchhhhcccccccchhhhhccCCcccCCcccccccccccccc
Confidence 9999999999999 7888632 4566666666332111 1
Q ss_pred ---CCccccCCCchh---------------------------hhhhhhhcCCccee-eecccCCccCChhH----HHHH-
Q 000729 752 ---SPKKLELGYSAS---------------------------VENHSENLGSIRKF-ICRFCGLKFDLLPD----LGRH- 795 (1326)
Q Consensus 752 ---p~~C~~Cgk~~s---------------------------L~~Hlr~HtgeKpf-kC~~CgKsF~sks~----L~rH- 795 (1326)
+..+..|+..+. -..+...++.+++. .+.+++..-...-. |..-
T Consensus 754 ~tp~~~e~~~~~~~~~e~~i~~~g~te~asa~~~~vg~~s~~~~~~~~~~T~~k~~~~~~~~~~~~~~~v~~~pvl~~~~ 833 (958)
T KOG1074|consen 754 VTPPPPENSCGRELEGEMAISVRGSTEEASANLDEVGTVSAAGEAGEEDDTSEKPTQASSFPGEILAPSVNMDPVLWNQE 833 (958)
T ss_pred cCCCccccccccccCcccccccccchhhhhcChhhhcCccccchhhhhcccCCCCcccccCCCcCCccccccCchhhccc
Confidence 122333331110 01111223344555 45555433221110 0000
Q ss_pred ------------HHhhccCCC--------------C-----CCCCCcccCcCCcccCCchhhhcccccccCCCcccCCCC
Q 000729 796 ------------HQAAHMGPN--------------L-----VNSRPHKKGIRFYAYKLKSGRLSRPRFKKGLGAVSYRIR 844 (1326)
Q Consensus 796 ------------H~r~Htg~~--------------~-----~~ekpykC~~C~ksF~~ks~L~~H~r~H~gekpy~C~~C 844 (1326)
-..+|.++. . .......|.+|++.|...+.|..|+|+|+++|||.|.+|
T Consensus 834 ~~~l~eg~~t~~n~~t~~~~~~sv~qs~~~p~l~p~l~~~~pvnn~h~C~vCgk~FsSSsALqiH~rTHtg~KPF~C~fC 913 (958)
T KOG1074|consen 834 TSMLNEGLATKTNEITPEGPADSVIQSGGVPTLEPSLGRPGPVNNAHVCNVCGKQFSSSAALEIHMRTHTGPKPFFCHFC 913 (958)
T ss_pred ccccccccccccccccCCCcchhhhhhccccccCCCCCCCCcccchhhhccchhcccchHHHHHhhhcCCCCCCccchhh
Confidence 000000000 0 002347899999999999999999999999999999999
Q ss_pred CccCCChHHHHhhccccCC
Q 000729 845 NRGAAGMKKRIQTLKPLAS 863 (1326)
Q Consensus 845 gk~Fs~~~~L~kH~ksH~~ 863 (1326)
++.|..+..|+.|+.+|..
T Consensus 914 ~~aFttrgnLKvHMgtH~w 932 (958)
T KOG1074|consen 914 EEAFTTRGNLKVHMGTHMW 932 (958)
T ss_pred hhhhhhhhhhhhhhccccc
Confidence 9999999999999998864
No 14
>KOG1074 consensus Transcriptional repressor SALM [Transcription]
Probab=99.69 E-value=1.4e-17 Score=201.10 Aligned_cols=240 Identities=21% Similarity=0.231 Sum_probs=161.2
Q ss_pred CcccCCCCCcccCChhhHhhhhhhccCccccccCCccccCccccccCChhHHHhHhhhcccccccccc------cccccc
Q 000729 638 KTHKCKICSQVFLHDQELGVHWMDNHKKEAQWLFRGYACAICLDSFTNKKVLESHVQERHHVQFVEQC------MLQQCI 711 (1326)
Q Consensus 638 kpfkC~~CgK~F~~~s~L~~H~~~~Ht~e~~~~~kpy~C~~CgKsF~sks~L~~H~r~Hh~e~~~~~~------kpfkC~ 711 (1326)
-+++|.+|.|.|.+.+.|+.| .+.|+++ +||+|.+||.+|.++.+|+.|...|+...+...- ..++|.
T Consensus 352 ~khkCr~CakvfgS~SaLqiH-lRSHTGE-----RPfqCnvCG~~FSTkGNLKvH~~rH~e~~p~~~m~p~~~~e~l~~~ 425 (958)
T KOG1074|consen 352 FKHKCRFCAKVFGSDSALQIH-LRSHTGE-----RPFQCNVCGNRFSTKGNLKVHFQRHREKYPHVQMNPHPVQEHLQYV 425 (958)
T ss_pred ccchhhhhHhhcCchhhhhhh-hhccCCC-----CCeeecccccccccccceeeeeeeccccCCccccCCCCchhhhcce
Confidence 357899999999999999999 9999999 9999999999999999999999988876432211 234566
Q ss_pred CCCCccCChhHHhhhhhhcccCc-------------ccch------hh--------hhhcccc-----------------
Q 000729 712 PCGSHFGNTEELWLHVQSVHAID-------------FKMS------EV--------AQQHNQS----------------- 747 (1326)
Q Consensus 712 ~Cgk~F~sks~L~~Hv~r~H~~e-------------f~C~------~C--------~k~f~~~----------------- 747 (1326)
+|...|.+-....-|-...|... -.+. .+ ...|...
T Consensus 426 i~st~~p~g~~vpp~k~~~~~~~~e~~~~~~sts~g~~~~~~~~~sv~~~~ts~~~~~~~s~~~~~~~~~i~~~s~e~e~ 505 (958)
T KOG1074|consen 426 ITSTGLPYGPSVPPEKAEEEAATVEPKLLVRSTSVGSATESLTPSSVSFGETSAPPLPAFSKFVLMKTVEIKSKSEEPEP 505 (958)
T ss_pred eeccccCCCCCCCCCCCcchhccccccccccccccCCCCCcccccccccccccCCCCCccccccccCCcccccccCCCCc
Confidence 66666655544444411111000 0000 00 0000000
Q ss_pred ------------------------------------------cCCCCCccccCCCch-hhhhhhh-----hc--------
Q 000729 748 ------------------------------------------VGEDSPKKLELGYSA-SVENHSE-----NL-------- 771 (1326)
Q Consensus 748 ------------------------------------------~~ekp~~C~~Cgk~~-sL~~Hlr-----~H-------- 771 (1326)
.....|.+...+-.. .+..-+. -+
T Consensus 506 ~vs~g~~~~~~~~gs~l~~s~~ks~~s~~~~~~~~~~~asa~m~~~~~~~~p~g~s~~~~aq~~~l~d~~~~~~~~~~ts 585 (958)
T KOG1074|consen 506 AVSEGSAISGVLEGSPLRMSSGKSVESLPVEADLLNHAASAGMFPPSYVSRPLGPSEDTTAQALQLVDKIPEALIEISTS 585 (958)
T ss_pred cccccccccccccCCccccccccCccccchhccccchhhccccCCchhhcCCCCcchhhHHHhhhhhccChhhcceeecc
Confidence 000111111111000 0000000 00
Q ss_pred ---------------CCcceeeecccCCccCChhHHHHHHHhhccCCCCCCCCCcccCcCCcccCCchhhhcccccccCC
Q 000729 772 ---------------GSIRKFICRFCGLKFDLLPDLGRHHQAAHMGPNLVNSRPHKKGIRFYAYKLKSGRLSRPRFKKGL 836 (1326)
Q Consensus 772 ---------------tgeKpfkC~~CgKsF~sks~L~rHH~r~Htg~~~~~ekpykC~~C~ksF~~ks~L~~H~r~H~ge 836 (1326)
...-|-+|-+|.++.+-++.|+- |.|+|+| ||||+|.+||++|+++.+|+.||-+|...
T Consensus 586 seS~kl~slv~~~~~~~TdPNqCiiC~rVlSC~saLqm-HyrtHtG-----ERPFkCKiCgRAFtTkGNLkaH~~vHka~ 659 (958)
T KOG1074|consen 586 SESPKLTSLVENSENKRTDPNQCIICLRVLSCPSALQM-HYRTHTG-----ERPFKCKICGRAFTTKGNLKAHMSVHKAK 659 (958)
T ss_pred cCCccccccccccccccCCccceeeeeecccchhhhhh-hhhcccC-----cCccccccccchhccccchhhcccccccC
Confidence 01146799999999999999999 9999999 99999999999999999999999998876
Q ss_pred ----CcccCC---CCCccCCChHHHHhhccccCCCCcccCCCcccccccCccccccchhhhhhh
Q 000729 837 ----GAVSYR---IRNRGAAGMKKRIQTLKPLASGEIVEQPKATEVVTLGTLVESQCSTLSRIL 893 (1326)
Q Consensus 837 ----kpy~C~---~Cgk~Fs~~~~L~kH~ksH~~~~~t~~p~~~e~~~~~~l~~~qCs~~~k~l 893 (1326)
-+|+|+ +|.+.|.+.-.|.+|.++|..+........ ..+.+...||+.|.+.+
T Consensus 660 p~~R~q~ScP~~~ic~~kftn~V~lpQhIriH~~~~~s~g~~a----~e~~~~adq~~~~qk~~ 719 (958)
T KOG1074|consen 660 PPARVQFSCPSTFICQKKFTNAVTLPQHIRIHLGGQISNGGTA----AEGILAADQCSSCQKTF 719 (958)
T ss_pred ccccccccCCchhhhcccccccccccceEEeecCCCCCCCccc----ccccchhcccchhhhcc
Confidence 458999 999999999999999999864433222111 24455666777777765
No 15
>PF05033 Pre-SET: Pre-SET motif; InterPro: IPR007728 This region is found in a number of histone lysine methyltransferases (HMTase), N-terminal to the SET domain; it is generally described as the pre-SET domain. Histone lysine methylation is part of the histone code that regulated chromatin function and epigenetic control of gene function. Histone lysine methyltransferases (HMTase) differ both in their substrate specificity for the various acceptor lysines as well as in their product specificity for the number of methyl groups (one, two, or three) they transfer. With just one exception [], the HMTases belong to SET family that can be classified according to the sequences surrounding the SET domain [, ]. Structural studies on the human SET7/9, a mono-methylase, have revealed the molecular basis for the specificity of the enzyme for the histone-target and the roles of the invariant residues in the SET domain in determining the methylation specificities []. The pre-SET domain, as found in the SUV39 SET family, contains nine invariant cysteine residues that are grouped into two segments separated by a region of variable length. These 9 cysteines coordinate 3 zinc ions to form a triangular cluster, where each of the zinc ions is coordinated by 4 four cysteines to give a tetrahedral configuration. The function of this domain is structural, holding together 2 long segments of random coils and stabilising the SET domain. The C-terminal region including the post-SET domain is disordered when not interacting with a histone tail and in the absence of zinc. The three conserved cysteines in the post-SET domain form a zinc-binding site [] when coupled to a fourth conserved cysteine in the knot-like structure close to the SET domain active site []. The structured post-SET region brings in the C-terminal residues that participate in S-adenosylmethine-binding and histone tail interactions. The three conserved cysteine residues are essential for HMTase activity, as replacement with serine abolishes HMTase activity []. ; GO: 0008270 zinc ion binding, 0018024 histone-lysine N-methyltransferase activity, 0034968 histone lysine methylation, 0005634 nucleus; PDB: 3K5K_A 2O8J_D 3RJW_B 1ML9_A 1PEG_B 1MVH_A 1MVX_A 3BO5_A 2RFI_B 3MO5_B ....
Probab=99.68 E-value=6e-17 Score=157.92 Aligned_cols=102 Identities=32% Similarity=0.664 Sum_probs=69.3
Q ss_pred cCCCCCCCCCeeEeeCCCccccccccCCCCCcccccCCCCCCCcEEcccCCCCCCCCCcccCCCCCcccCCCCc-CCCCC
Q 000729 1028 DISSGLESVPVACVVDDGLLETLCISADSSDSQKTRCSMPWESFTYVTKPLLDQSLDLDAESLQLGCACANSTC-FPETC 1106 (1326)
Q Consensus 1028 DiS~G~E~vPV~~vnd~d~~~~~~~~g~~~~~~~~~~~~P~~~F~Yi~~~~~~~~~~~d~~~~~~gC~C~~~~C-~~~~C 1106 (1326)
|||.|+|++||+++|++|+. .||..|+||+++++..++......+..||+|.+ .| .+..|
T Consensus 1 Dis~g~e~~pI~~~N~vd~~------------------~~p~~F~Yi~~~~~~~~~~~~~~~~~~~C~C~~-~C~~~~~C 61 (103)
T PF05033_consen 1 DISRGKENVPIPVVNDVDDE------------------PPPPNFEYIPENIYGEGVPDIDPEFLQGCDCSG-DCSNPSNC 61 (103)
T ss_dssp -TTCTSSSS-EEEEESSSS--------------------SSTSSEE-SS-EESTTSS-TBGGGTS----SS-SSTCTTTS
T ss_pred CCCCCccCCCEEEEeCCCCC------------------CCCCCeEEeeeEEcCCCccccccccCccCccCC-CCCCCCCC
Confidence 89999999999999999964 234799999999998877523345678999975 57 67889
Q ss_pred CcccccccccccccccCCCCcCCCcccCCCCceeecCCceEEecCCCCCCCCCCCCc
Q 000729 1107 DHVYLFDNDYEDAKDIDGKSVHGRFPYDQTGRVILEEGYLIYECNHMCSCDRTCPNR 1163 (1326)
Q Consensus 1107 ~C~~l~~~~y~~~~~~~g~~~~~~~~Yd~~G~l~~~~~~~i~EC~~~C~C~~~C~NR 1163 (1326)
.|+..+ ++.++|+.+|+|......+|||||+.|+|+.+|+||
T Consensus 62 ~C~~~~---------------~~~~~Y~~~g~l~~~~~~~i~EC~~~C~C~~~C~NR 103 (103)
T PF05033_consen 62 ECLQRN---------------GGIFAYDSNGRLRIPDKPPIFECNDNCGCSPSCRNR 103 (103)
T ss_dssp HHHCCT---------------SSS-SB-TTSSBSSSSTSEEE---TTSSS-TTSTT-
T ss_pred cCcccc---------------CccccccCCCcCccCCCCeEEeCCCCCCCCCCCCCC
Confidence 997532 234689999998877789999999999999999998
No 16
>KOG3608 consensus Zn finger proteins [General function prediction only]
Probab=99.67 E-value=1.5e-17 Score=184.25 Aligned_cols=192 Identities=18% Similarity=0.294 Sum_probs=164.3
Q ss_pred ccccccccCCCcccCCCCCcccCChhhHhhhhhhccCccccccCCccccCccccccCChhHHHhHhhhcccccccccccc
Q 000729 628 LAIAGRSEDEKTHKCKICSQVFLHDQELGVHWMDNHKKEAQWLFRGYACAICLDSFTNKKVLESHVQERHHVQFVEQCML 707 (1326)
Q Consensus 628 ~~~~~~h~~ekpfkC~~CgK~F~~~s~L~~H~~~~Ht~e~~~~~kpy~C~~CgKsF~sks~L~~H~r~Hh~e~~~~~~kp 707 (1326)
..+.++|+++|...|+.||..|.++..|-.|+++.-... ..+|.|..|.|.|.+...|..|+..|-.-
T Consensus 196 reH~r~Hs~eKvvACp~Cg~~F~~~tkl~DH~rRqt~l~----~n~fqC~~C~KrFaTeklL~~Hv~rHvn~-------- 263 (467)
T KOG3608|consen 196 REHIRTHSNEKVVACPHCGELFRTKTKLFDHLRRQTELN----TNSFQCAQCFKRFATEKLLKSHVVRHVNC-------- 263 (467)
T ss_pred HHHHHhcCCCeEEecchHHHHhccccHHHHHHHhhhhhc----CCchHHHHHHHHHhHHHHHHHHHHHhhhc--------
Confidence 345689999999999999999999999999954432221 27899999999999999999999988654
Q ss_pred ccccCCCCccCChhHHhhhhhhcccCcccchhhhhhcccccCCCCCccccCCCc----hhhhhhhhhcCCcceeeecc--
Q 000729 708 QQCIPCGSHFGNTEELWLHVQSVHAIDFKMSEVAQQHNQSVGEDSPKKLELGYS----ASVENHSENLGSIRKFICRF-- 781 (1326)
Q Consensus 708 fkC~~Cgk~F~sks~L~~Hv~r~H~~ef~C~~C~k~f~~~~~ekp~~C~~Cgk~----~sL~~Hlr~HtgeKpfkC~~-- 781 (1326)
|+|+.|+......++|.+|++..|. ..+|++|..|.+. +.|.+|..+|+ +-.|+|+.
T Consensus 264 ykCplCdmtc~~~ssL~~H~r~rHs----------------~dkpfKCd~Cd~~c~~esdL~kH~~~HS-~~~y~C~h~~ 326 (467)
T KOG3608|consen 264 YKCPLCDMTCSSASSLTTHIRYRHS----------------KDKPFKCDECDTRCVRESDLAKHVQVHS-KTVYQCEHPD 326 (467)
T ss_pred ccccccccCCCChHHHHHHHHhhhc----------------cCCCccccchhhhhccHHHHHHHHHhcc-ccceecCCCC
Confidence 8899999999999999999998897 6788888888754 46999999999 67899988
Q ss_pred cCCccCChhHHHHHHHhhccCCCCCCCCCcccCcCCcccCCchhhhcccccccCC------CcccCCCCCccCCCh
Q 000729 782 CGLKFDLLPDLGRHHQAAHMGPNLVNSRPHKKGIRFYAYKLKSGRLSRPRFKKGL------GAVSYRIRNRGAAGM 851 (1326)
Q Consensus 782 CgKsF~sks~L~rHH~r~Htg~~~~~ekpykC~~C~ksF~~ks~L~~H~r~H~ge------kpy~C~~Cgk~Fs~~ 851 (1326)
|..+|+....|++|.+.+|.|.+ +-+|.|..|++.|++..+|.+|++..++. +.|..+.|..+|-++
T Consensus 327 C~~s~r~~~q~~~H~~evhEg~n---p~~Y~CH~Cdr~ft~G~~L~~HL~kkH~f~~PsGh~RFtYk~~edG~mRL 399 (467)
T KOG3608|consen 327 CHYSVRTYTQMRRHFLEVHEGNN---PILYACHCCDRFFTSGKSLSAHLMKKHGFRLPSGHKRFTYKVDEDGFMRL 399 (467)
T ss_pred CcHHHHHHHHHHHHHHHhccCCC---CCceeeecchhhhccchhHHHHHHHhhcccCCCCCCceeeeeccCceeee
Confidence 99999999999998888887744 56899999999999999999999665554 557788888887543
No 17
>smart00468 PreSET N-terminal to some SET domains. A Cys-rich putative Zn2+-binding domain that occurs N-terminal to some SET domains. Function is unknown. Unpublished.
Probab=99.62 E-value=6.7e-16 Score=149.39 Aligned_cols=96 Identities=34% Similarity=0.652 Sum_probs=78.6
Q ss_pred eecCCCCCCCCCeeEeeCCCccccccccCCCCCcccccCCCCCCCcEEcccCCCCCCCCC-cccCCCCCcccCCCCcCCC
Q 000729 1026 CDDISSGLESVPVACVVDDGLLETLCISADSSDSQKTRCSMPWESFTYVTKPLLDQSLDL-DAESLQLGCACANSTCFPE 1104 (1326)
Q Consensus 1026 ~~DiS~G~E~vPV~~vnd~d~~~~~~~~g~~~~~~~~~~~~P~~~F~Yi~~~~~~~~~~~-d~~~~~~gC~C~~~~C~~~ 1104 (1326)
+.|||+|+|++||++||++|+. .|+++|+||++++++.++.+ ....+..||+|.+ .|.+.
T Consensus 1 ~~Dis~G~E~~pI~~vN~vD~~------------------~~p~~F~Yi~~~~~~~gv~~~~~~~~~~gC~C~~-~C~~~ 61 (98)
T smart00468 1 CLDISNGKENVPVPLVNEVDED------------------PPPPDFEYISEYIYGQGVPIDRSPSPLVGCSCSG-DCSSS 61 (98)
T ss_pred CccccCCccCCCcceEecCCCC------------------CCCCCcEECcceEcCCCcccccCCCCCCCCcCCC-CCCCC
Confidence 3699999999999999999964 23379999999999888752 3466789999997 78887
Q ss_pred C-CCcccccccccccccccCCCCcCCCcccCCCCceeecCCceEEecCCCCC
Q 000729 1105 T-CDHVYLFDNDYEDAKDIDGKSVHGRFPYDQTGRVILEEGYLIYECNHMCS 1155 (1326)
Q Consensus 1105 ~-C~C~~l~~~~y~~~~~~~g~~~~~~~~Yd~~G~l~~~~~~~i~EC~~~C~ 1155 (1326)
. |.|+.+ .++.|+|+..+++++..+.+|||||+.|+
T Consensus 62 ~~C~C~~~---------------~~~~~~Y~~~~~~~~~~~~~IyECn~~C~ 98 (98)
T smart00468 62 NKCECARK---------------NGGEFAYELNGGLRLKRKPLIYECNSRCS 98 (98)
T ss_pred CcCCcHhh---------------cCCccCcccCCCEEeCCCCEEEcCCCCCC
Confidence 6 999643 24678997777778888999999999985
No 18
>COG2940 Proteins containing SET domain [General function prediction only]
Probab=99.55 E-value=9.6e-16 Score=187.46 Aligned_cols=163 Identities=33% Similarity=0.482 Sum_probs=131.8
Q ss_pred EecCCCCCCCCCCCCcccccCceeeEEEEecCCCCccccccccccCCCeEEEeeeEEecHHHHHHhhccccCCCcceEEe
Q 000729 1148 YECNHMCSCDRTCPNRVLQNGVRVKLEVFKTENKGWAVRAGQAILRGTFVCEYIGEVLDELETNKRRSRYGRDGCGYMLN 1227 (1326)
Q Consensus 1148 ~EC~~~C~C~~~C~NRv~Q~g~~~~leVf~t~~kGwGVrA~e~I~~GtfI~EY~Gevit~~ea~~r~~~y~~~~~~Ylf~ 1227 (1326)
.++.........+.|............+..+..+||||||.+.|++|++|.+|.|+++...++..+...+...+..+.|.
T Consensus 309 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~fa~~~i~~~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (480)
T COG2940 309 DFSKSNVSKLKELLNSNGCKKRREPNVVQESEIKGYGVFALESIKKGEFIIEYHGEIIRRKEAREREENYDLLGNEFSFG 388 (480)
T ss_pred ccccccCccccchhhhcccccccchhhhhhhcccccceeehhhccchHHHHHhcCcccchHHHHhhhccccccccccchh
Confidence 34445555555677777777778888888999999999999999999999999999999999988877664443333333
Q ss_pred cCcccccccccccCceeEEEeccccCCccccccCCCCCCceEEEEEEecccCceeEEEEEEccCCCCCCeEEEecCCCCC
Q 000729 1228 IGAHINDMGRLIEGQVRYVIDATKYGNVSRFINHSCFPNLVNHQVLVESMDYQRAHIGLYASRDIAVGEELTYDYHYELL 1307 (1326)
Q Consensus 1228 l~~~~~~~~~~~~~~~~~~IDA~~~GNvaRFINHSC~PN~~~~~V~v~~~d~~~~~I~~fA~RdI~~GEELT~DYg~~~~ 1307 (1326)
... ....++|+...|+++|||||||.||+.+..+.+. +..++.++|+|||.+|||||+||+..++
T Consensus 389 ~~~-----------~~~~~~d~~~~g~~~r~~nHS~~pN~~~~~~~~~----g~~~~~~~~~rDI~~geEl~~dy~~~~~ 453 (480)
T COG2940 389 LLE-----------DKDKVRDSQKAGDVARFINHSCTPNCEASPIEVN----GIFKISIYAIRDIKAGEELTYDYGPSLE 453 (480)
T ss_pred hcc-----------ccchhhhhhhcccccceeecCCCCCcceeccccc----ccceeeecccccchhhhhhccccccccc
Confidence 222 1257899999999999999999999999877665 2668999999999999999999998875
Q ss_pred CCC--------CceeecCCCCCcccc
Q 000729 1308 SGE--------GYPCHCGASKCRGRL 1325 (1326)
Q Consensus 1308 ~~~--------~~~C~CGs~~CRg~l 1325 (1326)
... ...|.||+..|++++
T Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (480)
T COG2940 454 DNRELKKLLEKRWGCACGEDRCSHTM 479 (480)
T ss_pred cchhhhhhhhhhhccccCCCccCCCC
Confidence 422 578999999999986
No 19
>KOG3576 consensus Ovo and related transcription factors [Transcription]
Probab=99.39 E-value=1.8e-13 Score=142.76 Aligned_cols=128 Identities=21% Similarity=0.403 Sum_probs=102.3
Q ss_pred cccccCCCcccCCCCCcccCChhhHhhhhhhccCccccccCCccccCccccccCChhHHHhHhhhccccccccccccccc
Q 000729 631 AGRSEDEKTHKCKICSQVFLHDQELGVHWMDNHKKEAQWLFRGYACAICLDSFTNKKVLESHVQERHHVQFVEQCMLQQC 710 (1326)
Q Consensus 631 ~~~h~~ekpfkC~~CgK~F~~~s~L~~H~~~~Ht~e~~~~~kpy~C~~CgKsF~sks~L~~H~r~Hh~e~~~~~~kpfkC 710 (1326)
.....+...|.|.+|+|.|.....|.+| ++.|... +.|-|..|||.|.....|++|+|+|+|. +||+|
T Consensus 109 ~gsssd~d~ftCrvCgK~F~lQRmlnrh-~kch~~v-----kr~lct~cgkgfndtfdlkrh~rthtgv------rpykc 176 (267)
T KOG3576|consen 109 IGSSSDQDSFTCRVCGKKFGLQRMLNRH-LKCHSDV-----KRHLCTFCGKGFNDTFDLKRHTRTHTGV------RPYKC 176 (267)
T ss_pred ccCCCCCCeeeeehhhhhhhHHHHHHHH-hhhccHH-----HHHHHhhccCcccchhhhhhhhccccCc------cccch
Confidence 3455667889999999999999999999 8999998 8999999999999999999999999998 89999
Q ss_pred cCCCCccCChhHHhhhhhhcccCcccchhhhhhcccccCCCCCccccCCCchhhhhhhhhcCCcceeeecccCCccCChh
Q 000729 711 IPCGSHFGNTEELWLHVQSVHAIDFKMSEVAQQHNQSVGEDSPKKLELGYSASVENHSENLGSIRKFICRFCGLKFDLLP 790 (1326)
Q Consensus 711 ~~Cgk~F~sks~L~~Hv~r~H~~ef~C~~C~k~f~~~~~ekp~~C~~Cgk~~sL~~Hlr~HtgeKpfkC~~CgKsF~sks 790 (1326)
..|++.|....+|..|++.+|... ..+. ......|-|.|+.||.+-....
T Consensus 177 ~~c~kaftqrcsleshl~kvhgv~-------------------------~~ya-----ykerr~kl~vcedcg~t~~~~e 226 (267)
T KOG3576|consen 177 SLCEKAFTQRCSLESHLKKVHGVQ-------------------------HQYA-----YKERRAKLYVCEDCGYTSERPE 226 (267)
T ss_pred hhhhHHHHhhccHHHHHHHHcCch-------------------------HHHH-----HHHhhhheeeecccCCCCCChh
Confidence 999999999999999999999621 0000 1112346677777777777777
Q ss_pred HHHHHHHhhcc
Q 000729 791 DLGRHHQAAHM 801 (1326)
Q Consensus 791 ~L~rHH~r~Ht 801 (1326)
.+.. |...|.
T Consensus 227 ~~~~-h~~~~h 236 (267)
T KOG3576|consen 227 VYYL-HLKLHH 236 (267)
T ss_pred HHHH-HHHhcC
Confidence 7766 444443
No 20
>KOG3576 consensus Ovo and related transcription factors [Transcription]
Probab=99.32 E-value=2.5e-13 Score=141.67 Aligned_cols=120 Identities=18% Similarity=0.306 Sum_probs=94.2
Q ss_pred CccccCccccccCChhHHHhHhhhccccccccccccccccCCCCccCChhHHhhhhhhcccCcccchhhhhhcccccCCC
Q 000729 672 RGYACAICLDSFTNKKVLESHVQERHHVQFVEQCMLQQCIPCGSHFGNTEELWLHVQSVHAIDFKMSEVAQQHNQSVGED 751 (1326)
Q Consensus 672 kpy~C~~CgKsF~sks~L~~H~r~Hh~e~~~~~~kpfkC~~Cgk~F~sks~L~~Hv~r~H~~ef~C~~C~k~f~~~~~ek 751 (1326)
..|.|.+|+|.|.....|.+|++.|... +.|-|..||+.|...-.|++|
T Consensus 116 d~ftCrvCgK~F~lQRmlnrh~kch~~v------kr~lct~cgkgfndtfdlkrh------------------------- 164 (267)
T KOG3576|consen 116 DSFTCRVCGKKFGLQRMLNRHLKCHSDV------KRHLCTFCGKGFNDTFDLKRH------------------------- 164 (267)
T ss_pred CeeeeehhhhhhhHHHHHHHHhhhccHH------HHHHHhhccCcccchhhhhhh-------------------------
Confidence 5688999999999888899998888776 556688888888765555555
Q ss_pred CCccccCCCchhhhhhhhhcCCcceeeecccCCccCChhHHHHHHHhhccCCCC-----CCCCCcccCcCCcccCCchhh
Q 000729 752 SPKKLELGYSASVENHSENLGSIRKFICRFCGLKFDLLPDLGRHHQAAHMGPNL-----VNSRPHKKGIRFYAYKLKSGR 826 (1326)
Q Consensus 752 p~~C~~Cgk~~sL~~Hlr~HtgeKpfkC~~CgKsF~sks~L~rHH~r~Htg~~~-----~~ekpykC~~C~ksF~~ks~L 826 (1326)
+|+|+|.+||+|..|+|.|.++-.|..|..++|.-... ...|-|.|+.||.+-.....+
T Consensus 165 ----------------~rthtgvrpykc~~c~kaftqrcsleshl~kvhgv~~~yaykerr~kl~vcedcg~t~~~~e~~ 228 (267)
T KOG3576|consen 165 ----------------TRTHTGVRPYKCSLCEKAFTQRCSLESHLKKVHGVQHQYAYKERRAKLYVCEDCGYTSERPEVY 228 (267)
T ss_pred ----------------hccccCccccchhhhhHHHHhhccHHHHHHHHcCchHHHHHHHhhhheeeecccCCCCCChhHH
Confidence 67778889999999999999999999988888865321 125678888888888888888
Q ss_pred hcccccccCCCc
Q 000729 827 LSRPRFKKGLGA 838 (1326)
Q Consensus 827 ~~H~r~H~gekp 838 (1326)
..|++.|+...|
T Consensus 229 ~~h~~~~hp~Sp 240 (267)
T KOG3576|consen 229 YLHLKLHHPFSP 240 (267)
T ss_pred HHHHHhcCCCCH
Confidence 888877766544
No 21
>PF00856 SET: SET domain; InterPro: IPR001214 The SET domain appears generally as one part of a larger multidomain protein, and recently there were described three structures of very different proteins with distinct domain compositions: Neurospora crassa DIM-5, a member of the Su(var) family of HKMTs which methylate histone H3 on lysine 9,human SET7 (also called SET9), which methylates H3 on lysine 4 and garden pea Rubisco LSMT, an enzyme that does not modify histones, but instead methylates lysine 14 in the flexible tail of the large subunit of the enzyme Rubisco. The SET domain itself turned out to be an uncommon structure. Although in all three studies, electron density maps revealed the location of the AdoMet or AdoHcy cofactor, the SET domain bears no similarity at all to the canonical/AdoMet-dependent methyltransferase fold. Strictly conserved in the C-terminal motif of the SET domain tyrosine could be involved in abstracting a proton from the protonated amino group of the substrate lysine, promoting its nucleophilic attack on the sulphonium methyl group of the AdoMet cofactor. In contrast to the AdoMet-dependent protein methyltranferases of the classical type, which tend to bind their polypeptide substrates on top of the cofactor, it is noted from the Rubisco LSMT structure that the AdoMet seems to bind in a separate cleft, suggesting how a polypeptide substrate could be subjected to multiple rounds of methylation without having to be released from the enzyme. In contrast, SET7/9 is able to add only a single methyl group to its substrate. It has been demonstrated that association of SET domain and myotubularin-related proteins modulates growth control []. The SET domain-containing Drosophila melanogaster (Fruit fly) protein, enhancer of zeste, has a function in segment determination and the mammalian homologue may be involved in the regulation of gene transcription and chromatin structure. Histone lysine methylation is part of the histone code that regulated chromatin function and epigenetic control of gene function. Histone lysine methyltransferases (HMTase) differ both in their substrate specificity for the various acceptor lysines as well as in their product specificity for the number of methyl groups (one, two, or three) they transfer. With just one exception [], the HMTases belong to SET family that can be classified according to the sequences surrounding the SET domain [, ]. Structural studies on the human SET7/9, a mono-methylase, have revealed the molecular basis for the specificity of the enzyme for the histone-target and the roles of the invariant residues in the SET domain in determining the methylation specificities []. The pre-SET domain, as found in the SUV39 SET family, contains nine invariant cysteine residues that are grouped into two segments separated by a region of variable length. These 9 cysteines coordinate 3 zinc ions to form to form a triangular cluster, where each of the zinc ions is coordinated by 4 four cysteines to give a tetrahedral configuration. The function of this domain is structural, holding together 2 long segments of random coils. The C-terminal region including the post-SET domain is disordered when not interacting with a histone tail and in the absence of zinc. The three conserved cysteines in the post-SET domain form a zinc-binding site when coupled to a fourth conserved cysteine in the knot-like structure close to the SET domain active site []. The structured post-SET region brings in the C-terminal residues that participate in S-adenosylmethine-binding and histone tail interactions. The three conserved cysteine residues are essential for HMTase activity, as replacement with serine abolishes HMTase activity [], []. ; GO: 0005515 protein binding; PDB: 3TG5_A 3S7F_A 3RIB_B 3TG4_A 3S7J_A 3S7D_A 3S7B_A 3H6L_A 3SMT_A 3K5K_A ....
Probab=99.30 E-value=1.5e-12 Score=133.37 Aligned_cols=118 Identities=18% Similarity=0.081 Sum_probs=73.7
Q ss_pred CccccccccccCCCeEEEeeeEEecHHHHHHhh---ccc--cCCCcceEEec--------------------------Cc
Q 000729 1182 GWAVRAGQAILRGTFVCEYIGEVLDELETNKRR---SRY--GRDGCGYMLNI--------------------------GA 1230 (1326)
Q Consensus 1182 GwGVrA~e~I~~GtfI~EY~Gevit~~ea~~r~---~~y--~~~~~~Ylf~l--------------------------~~ 1230 (1326)
|+||+|+++|++|++|+++.+.+++..++.... ... ........... ..
T Consensus 1 GrGl~At~dI~~Ge~I~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (162)
T PF00856_consen 1 GRGLFATRDIKAGEVILIPRPAILTPDEVSPQPELLRLQLSKALEEQSRSDFSIQKKQKAEKSERSPQLESLHSISLRSE 80 (162)
T ss_dssp SEEEEESS-B-TTEEEEEESEEEEEHHHHHCHHHHSHHTTCSSSCSHHTTHHHHHHHHHHHHHHHHHHHHHHHHHCHTTT
T ss_pred CEEEEECccCCCCCEEEEECcceEEehhhhhcccchhhhhhhhhcccccccccccccccccccccccccccccccccccc
Confidence 899999999999999999999999987775420 000 00000000000 00
Q ss_pred cccc-------------ccccccCceeEEEeccccCCccccccCCCCCCceEEEEEEecccCceeEEEEEEccCCCCCCe
Q 000729 1231 HIND-------------MGRLIEGQVRYVIDATKYGNVSRFINHSCFPNLVNHQVLVESMDYQRAHIGLYASRDIAVGEE 1297 (1326)
Q Consensus 1231 ~~~~-------------~~~~~~~~~~~~IDA~~~GNvaRFINHSC~PN~~~~~V~v~~~d~~~~~I~~fA~RdI~~GEE 1297 (1326)
.... .............++....+++.|+||||.|||.+...... ....+.|.|.|||++|||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~d~~NHsc~pn~~~~~~~~~----~~~~~~~~a~r~I~~GeE 156 (162)
T PF00856_consen 81 LQFSQAFQWSWFISWTRSDFSSRSFSEDDRDGIALYPFADMLNHSCDPNCEVSFDFDG----DGGCLVVRATRDIKKGEE 156 (162)
T ss_dssp CCTCCHHHHHHHHHHHHHEEEEEEETTEEEEEEEEETGGGGSEEESSTSEEEEEEEET----TTTEEEEEESS-B-TTSB
T ss_pred ccccccccchhhccccceeeeccccccccccccccCcHhHheccccccccceeeEeec----ccceEEEEECCccCCCCE
Confidence 0000 00000001224456777889999999999999998776543 567899999999999999
Q ss_pred EEEecC
Q 000729 1298 LTYDYH 1303 (1326)
Q Consensus 1298 LT~DYg 1303 (1326)
||++||
T Consensus 157 i~isYG 162 (162)
T PF00856_consen 157 IFISYG 162 (162)
T ss_dssp EEEEST
T ss_pred EEEEEC
Confidence 999998
No 22
>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]
Probab=99.16 E-value=8.7e-12 Score=148.93 Aligned_cols=54 Identities=26% Similarity=0.371 Sum_probs=50.0
Q ss_pred cceeeecccCCccCChhHHHHHHHhhccCCCCCCCCCcccCcCCcccCCchhhhcccccc
Q 000729 774 IRKFICRFCGLKFDLLPDLGRHHQAAHMGPNLVNSRPHKKGIRFYAYKLKSGRLSRPRFK 833 (1326)
Q Consensus 774 eKpfkC~~CgKsF~sks~L~rHH~r~Htg~~~~~ekpykC~~C~ksF~~ks~L~~H~r~H 833 (1326)
.|.|+|..|||.|+.+.+|+. |+|+|.| +|||.|+.|+|+|+....+..||...
T Consensus 279 lRKFKCtECgKAFKfKHHLKE-HlRIHSG-----EKPfeCpnCkKRFSHSGSySSHmSSK 332 (1007)
T KOG3623|consen 279 LRKFKCTECGKAFKFKHHLKE-HLRIHSG-----EKPFECPNCKKRFSHSGSYSSHMSSK 332 (1007)
T ss_pred hccccccccchhhhhHHHHHh-hheeecC-----CCCcCCcccccccccCCccccccccc
Confidence 478999999999999999999 9999999 99999999999999999999998654
No 23
>PLN03086 PRLI-interacting factor K; Provisional
Probab=98.76 E-value=7e-09 Score=126.61 Aligned_cols=139 Identities=17% Similarity=0.162 Sum_probs=101.0
Q ss_pred cccCccccccCChhHHHhHhhhccccccccccccccccC--CCCccCChhHHhhhhhhcccCcccchhhhhhcccccCCC
Q 000729 674 YACAICLDSFTNKKVLESHVQERHHVQFVEQCMLQQCIP--CGSHFGNTEELWLHVQSVHAIDFKMSEVAQQHNQSVGED 751 (1326)
Q Consensus 674 y~C~~CgKsF~sks~L~~H~r~Hh~e~~~~~~kpfkC~~--Cgk~F~sks~L~~Hv~r~H~~ef~C~~C~k~f~~~~~ek 751 (1326)
-.|+.|...... ..|..|...-.- ..-.|+. |+..|. +..+..|
T Consensus 408 V~C~NC~~~i~l-~~l~lHe~~C~r-------~~V~Cp~~~Cg~v~~-r~el~~H------------------------- 453 (567)
T PLN03086 408 VECRNCKHYIPS-RSIALHEAYCSR-------HNVVCPHDGCGIVLR-VEEAKNH------------------------- 453 (567)
T ss_pred EECCCCCCccch-hHHHHHHhhCCC-------cceeCCcccccceee-ccccccC-------------------------
Confidence 468888876554 446677643221 1234774 888883 4445555
Q ss_pred CCccccCCCch---hhhhhhhhcCCcceeeecccCCccCChhHHHHHHHhhccCCCCCCCCCcccCcCCcccCC------
Q 000729 752 SPKKLELGYSA---SVENHSENLGSIRKFICRFCGLKFDLLPDLGRHHQAAHMGPNLVNSRPHKKGIRFYAYKL------ 822 (1326)
Q Consensus 752 p~~C~~Cgk~~---sL~~Hlr~HtgeKpfkC~~CgKsF~sks~L~rHH~r~Htg~~~~~ekpykC~~C~ksF~~------ 822 (1326)
+.|..|++.+ .|..|+++|+ +++.|+ ||+.| .+..|.. |+++|.. .+++.|++|++.|..
T Consensus 454 -~~C~~Cgk~f~~s~LekH~~~~H--kpv~Cp-Cg~~~-~R~~L~~-H~~thCp-----~Kpi~C~fC~~~v~~g~~~~d 522 (567)
T PLN03086 454 -VHCEKCGQAFQQGEMEKHMKVFH--EPLQCP-CGVVL-EKEQMVQ-HQASTCP-----LRLITCRFCGDMVQAGGSAMD 522 (567)
T ss_pred -ccCCCCCCccchHHHHHHHHhcC--CCccCC-CCCCc-chhHHHh-hhhccCC-----CCceeCCCCCCccccCccccc
Confidence 3455665433 5899999986 899999 99765 6689988 8899999 899999999999952
Q ss_pred ----chhhhcccccccCCCcccCCCCCccCCChHHHHhhcc
Q 000729 823 ----KSGRLSRPRFKKGLGAVSYRIRNRGAAGMKKRIQTLK 859 (1326)
Q Consensus 823 ----ks~L~~H~r~H~gekpy~C~~Cgk~Fs~~~~L~kH~k 859 (1326)
.+.|..|..++ |.+++.|..||+.+. ...+..|+.
T Consensus 523 ~~d~~s~Lt~HE~~C-G~rt~~C~~Cgk~Vr-lrdm~~H~~ 561 (567)
T PLN03086 523 VRDRLRGMSEHESIC-GSRTAPCDSCGRSVM-LKEMDIHQI 561 (567)
T ss_pred hhhhhhhHHHHHHhc-CCcceEccccCCeee-ehhHHHHHH
Confidence 45899999885 999999999998875 344555554
No 24
>KOG1081 consensus Transcription factor NSD1 and related SET domain proteins [Transcription]
Probab=98.73 E-value=3.3e-09 Score=128.50 Aligned_cols=145 Identities=34% Similarity=0.603 Sum_probs=108.3
Q ss_pred EEec-CCCCCCCCCCCCcccccCceeeEEEEecCCCCccccccccccCCCeEEEeeeEEecHHHHHHhhccccCCCc--c
Q 000729 1147 IYEC-NHMCSCDRTCPNRVLQNGVRVKLEVFKTENKGWAVRAGQAILRGTFVCEYIGEVLDELETNKRRSRYGRDGC--G 1223 (1326)
Q Consensus 1147 i~EC-~~~C~C~~~C~NRv~Q~g~~~~leVf~t~~kGwGVrA~e~I~~GtfI~EY~Gevit~~ea~~r~~~y~~~~~--~ 1223 (1326)
.+|| +..|.+...|.|+-........ +. + +|..+|.+| +|++++..+...|......... .
T Consensus 289 ~~~~~p~~~~~~~~~~~~~~sk~~~~e------~~-~---~~~~~~~k~------vg~~i~~~e~~~~~~~~~~~~~~~~ 352 (463)
T KOG1081|consen 289 AYEVHPKVCSAEERCHNQQFSKESYPE------PQ-K---TAKADIRKG------VGEVIDDKECKARLQRVKESDLVDF 352 (463)
T ss_pred hhhhcccccccccccccchhhhhcccc------cc-h---hhHHhhhcc------cCcccchhhheeehhhhhccchhhh
Confidence 3444 5788888889888654433333 22 2 889999999 9999999887765533222111 1
Q ss_pred eEEecCcccccccccccCceeEEEeccccCCccccccCCCCCCceEEEEEEecccCceeEEEEEEccCCCCCCeEEEecC
Q 000729 1224 YMLNIGAHINDMGRLIEGQVRYVIDATKYGNVSRFINHSCFPNLVNHQVLVESMDYQRAHIGLYASRDIAVGEELTYDYH 1303 (1326)
Q Consensus 1224 Ylf~l~~~~~~~~~~~~~~~~~~IDA~~~GNvaRFINHSC~PN~~~~~V~v~~~d~~~~~I~~fA~RdI~~GEELT~DYg 1303 (1326)
|+..+.. ...||+..+||.+||+||||+||+..+.+.+. +..++++||.++|++|||||++|.
T Consensus 353 ~~~~~e~-------------~~~id~~~~~n~sr~~nh~~~~~v~~~k~~~~----~~t~~~~~a~~~i~~g~e~t~~~n 415 (463)
T KOG1081|consen 353 YMVFIQK-------------DRIIDAGPKGNYSRFLNHSCQPNVETEKWQVI----GDTRVGLFAPRQIEAGEELTFNYN 415 (463)
T ss_pred hhhhhhc-------------ccccccccccchhhhhcccCCCceeechhhee----cccccccccccccccchhhhheee
Confidence 2111111 12899999999999999999999999888777 778899999999999999999998
Q ss_pred CCCCCCCCceeecCCCCCcccc
Q 000729 1304 YELLSGEGYPCHCGASKCRGRL 1325 (1326)
Q Consensus 1304 ~~~~~~~~~~C~CGs~~CRg~l 1325 (1326)
..-. +....|.||+.+|.+.+
T Consensus 416 ~~~~-~~~~~~~~~~e~~~~~~ 436 (463)
T KOG1081|consen 416 GNCE-GNEKRCCCGSENCTETK 436 (463)
T ss_pred cccc-CCcceEeecccccccCC
Confidence 7642 35689999999998864
No 25
>PLN03086 PRLI-interacting factor K; Provisional
Probab=98.66 E-value=2.9e-08 Score=121.27 Aligned_cols=143 Identities=20% Similarity=0.327 Sum_probs=99.9
Q ss_pred cccCCCCCcccCChhhHhhhhhhccCccccccCCccccCc--cccccCChhHHHhHhhhccccccccccccccccCCCCc
Q 000729 639 THKCKICSQVFLHDQELGVHWMDNHKKEAQWLFRGYACAI--CLDSFTNKKVLESHVQERHHVQFVEQCMLQQCIPCGSH 716 (1326)
Q Consensus 639 pfkC~~CgK~F~~~s~L~~H~~~~Ht~e~~~~~kpy~C~~--CgKsF~sks~L~~H~r~Hh~e~~~~~~kpfkC~~Cgk~ 716 (1326)
.-.|+.|...... ..|..| .....- ..-.|+. |+..|. +..|..| +.|+.|++.
T Consensus 407 ~V~C~NC~~~i~l-~~l~lH-e~~C~r------~~V~Cp~~~Cg~v~~-r~el~~H---------------~~C~~Cgk~ 462 (567)
T PLN03086 407 TVECRNCKHYIPS-RSIALH-EAYCSR------HNVVCPHDGCGIVLR-VEEAKNH---------------VHCEKCGQA 462 (567)
T ss_pred eEECCCCCCccch-hHHHHH-HhhCCC------cceeCCcccccceee-ccccccC---------------ccCCCCCCc
Confidence 4578889887654 456688 433322 3346874 998884 4445555 249999999
Q ss_pred cCChhHHhhhhhhcccCcccchhhhhhcccccCCCCCccccCCCchhhhhhhhhcCCcceeeecccCCccC---------
Q 000729 717 FGNTEELWLHVQSVHAIDFKMSEVAQQHNQSVGEDSPKKLELGYSASVENHSENLGSIRKFICRFCGLKFD--------- 787 (1326)
Q Consensus 717 F~sks~L~~Hv~r~H~~ef~C~~C~k~f~~~~~ekp~~C~~Cgk~~sL~~Hlr~HtgeKpfkC~~CgKsF~--------- 787 (1326)
|. ...|..|++ .|...+.|+ |+..+ .+..|..|+++|.+++++.|++|++.|.
T Consensus 463 f~-~s~LekH~~-~~Hkpv~Cp-Cg~~~---------------~R~~L~~H~~thCp~Kpi~C~fC~~~v~~g~~~~d~~ 524 (567)
T PLN03086 463 FQ-QGEMEKHMK-VFHEPLQCP-CGVVL---------------EKEQMVQHQASTCPLRLITCRFCGDMVQAGGSAMDVR 524 (567)
T ss_pred cc-hHHHHHHHH-hcCCCccCC-CCCCc---------------chhHHHhhhhccCCCCceeCCCCCCccccCccccchh
Confidence 96 678999944 443334444 44322 1247999999999999999999999995
Q ss_pred -ChhHHHHHHHhhccCCCCCCCCCcccCcCCcccCCchhhhcccc
Q 000729 788 -LLPDLGRHHQAAHMGPNLVNSRPHKKGIRFYAYKLKSGRLSRPR 831 (1326)
Q Consensus 788 -sks~L~rHH~r~Htg~~~~~ekpykC~~C~ksF~~ks~L~~H~r 831 (1326)
..+.|.. |..++ | .+++.|..|++.|..+ .|..|+.
T Consensus 525 d~~s~Lt~-HE~~C-G-----~rt~~C~~Cgk~Vrlr-dm~~H~~ 561 (567)
T PLN03086 525 DRLRGMSE-HESIC-G-----SRTAPCDSCGRSVMLK-EMDIHQI 561 (567)
T ss_pred hhhhhHHH-HHHhc-C-----CcceEccccCCeeeeh-hHHHHHH
Confidence 2458888 67776 6 7999999999988766 5667763
No 26
>KOG2589 consensus Histone tail methylase [Chromatin structure and dynamics]
Probab=98.65 E-value=1.6e-08 Score=114.28 Aligned_cols=117 Identities=23% Similarity=0.309 Sum_probs=89.1
Q ss_pred CCCCccccccccccCCCeEEEeeeEEecHHHHHHhh-ccccCCCcceEEecCcccccccccccCceeEEEeccccCCccc
Q 000729 1179 ENKGWAVRAGQAILRGTFVCEYIGEVLDELETNKRR-SRYGRDGCGYMLNIGAHINDMGRLIEGQVRYVIDATKYGNVSR 1257 (1326)
Q Consensus 1179 ~~kGwGVrA~e~I~~GtfI~EY~Gevit~~ea~~r~-~~y~~~~~~Ylf~l~~~~~~~~~~~~~~~~~~IDA~~~GNvaR 1257 (1326)
...|--|.+++.+.+|+=|-..+|-|+.-.+++++. .+.+..+-+.+|..... .|..+-..|+
T Consensus 135 ~~~gAkivst~~w~~ndkIe~LvGcIaeLse~eE~~ll~~g~nDFSvmyStRk~----------------caqLwLGPaa 198 (453)
T KOG2589|consen 135 SQNGAKIVSTKSWSRNDKIELLVGCIAELSEAEERSLLRGGGNDFSVMYSTRKR----------------CAQLWLGPAA 198 (453)
T ss_pred cCCCceEEeeccccCCccHHHhhhhhhhcChhhhHHHHhccCCceeeeeecccc----------------hhhheeccHH
Confidence 356777899999999999999999998888887773 22333344444443221 1122234589
Q ss_pred cccCCCCCCceEEEEEEecccCceeEEEEEEccCCCCCCeEEEecCCCCCCCCCceeecCC
Q 000729 1258 FINHSCFPNLVNHQVLVESMDYQRAHIGLYASRDIAVGEELTYDYHYELLSGEGYPCHCGA 1318 (1326)
Q Consensus 1258 FINHSC~PN~~~~~V~v~~~d~~~~~I~~fA~RdI~~GEELT~DYg~~~~~~~~~~C~CGs 1318 (1326)
||||-|.|||.+..- +.-++.+-++|||+||||||--||.+|+......|.|-+
T Consensus 199 fINHDCrpnCkFvs~-------g~~tacvkvlRDIePGeEITcFYgs~fFG~~N~~CeC~T 252 (453)
T KOG2589|consen 199 FINHDCRPNCKFVST-------GRDTACVKVLRDIEPGEEITCFYGSGFFGENNEECECVT 252 (453)
T ss_pred hhcCCCCCCceeecC-------CCceeeeehhhcCCCCceeEEeecccccCCCCceeEEee
Confidence 999999999998442 456788999999999999999999999988888999976
No 27
>PHA00733 hypothetical protein
Probab=98.60 E-value=2.1e-08 Score=101.89 Aligned_cols=86 Identities=10% Similarity=0.040 Sum_probs=67.5
Q ss_pred ccccccCCCCccCChhHHhhhhhhcccCcccchhhhhhcccccCCCCCccccCCCchhhhhhhhhcCCcceeeecccCCc
Q 000729 706 MLQQCIPCGSHFGNTEELWLHVQSVHAIDFKMSEVAQQHNQSVGEDSPKKLELGYSASVENHSENLGSIRKFICRFCGLK 785 (1326)
Q Consensus 706 kpfkC~~Cgk~F~sks~L~~Hv~r~H~~ef~C~~C~k~f~~~~~ekp~~C~~Cgk~~sL~~Hlr~HtgeKpfkC~~CgKs 785 (1326)
+++.|.+|.+.|.+...|..| ..|.+|+..| +.+||.|+.||+.
T Consensus 39 ~~~~~~~~~~~~~~~~~l~~~-----------------------------------~~l~~~~~~~-~~kPy~C~~Cgk~ 82 (128)
T PHA00733 39 KRLIRAVVKTLIYNPQLLDES-----------------------------------SYLYKLLTSK-AVSPYVCPLCLMP 82 (128)
T ss_pred hhHHHHHHhhhccChhhhcch-----------------------------------HHHHhhcccC-CCCCccCCCCCCc
Confidence 677888888888887777766 1355555444 4788999999999
Q ss_pred cCChhHHHHHHHhhccCCCCCCCCCcccCcCCcccCCchhhhcccccccC
Q 000729 786 FDLLPDLGRHHQAAHMGPNLVNSRPHKKGIRFYAYKLKSGRLSRPRFKKG 835 (1326)
Q Consensus 786 F~sks~L~rHH~r~Htg~~~~~ekpykC~~C~ksF~~ks~L~~H~r~H~g 835 (1326)
|.+...|.. |++.|+. +|.|+.|++.|.....|..|+..+++
T Consensus 83 Fss~s~L~~-H~r~h~~-------~~~C~~CgK~F~~~~sL~~H~~~~h~ 124 (128)
T PHA00733 83 FSSSVSLKQ-HIRYTEH-------SKVCPVCGKEFRNTDSTLDHVCKKHN 124 (128)
T ss_pred CCCHHHHHH-HHhcCCc-------CccCCCCCCccCCHHHHHHHHHHhcC
Confidence 999999988 6777643 68999999999999999999876665
No 28
>KOG1141 consensus Predicted histone methyl transferase [Chromatin structure and dynamics]
Probab=98.49 E-value=1.3e-07 Score=115.01 Aligned_cols=284 Identities=30% Similarity=0.525 Sum_probs=191.2
Q ss_pred CCCceeeecCCCCCCCCCeeEeeCCCccccccccCCCCCcccccCCCCCCCcEEcccCCCCCCCCCcccCCCCCcccCCC
Q 000729 1020 LRGTVLCDDISSGLESVPVACVVDDGLLETLCISADSSDSQKTRCSMPWESFTYVTKPLLDQSLDLDAESLQLGCACANS 1099 (1326)
Q Consensus 1020 ~~~~~~~~DiS~G~E~vPV~~vnd~d~~~~~~~~g~~~~~~~~~~~~P~~~F~Yi~~~~~~~~~~~d~~~~~~gC~C~~~ 1099 (1326)
+..++-..|.+.|.+.+|+|.||.+|...++.-+ ++. ..|.|.-+... ......+..||.|..
T Consensus 871 D~~g~d~~d~~~g~sg~~~p~~~~~d~~~~~~c~----d~~--------~~~~~~~~~~~----s~~~~~~~~~~s~d~- 933 (1262)
T KOG1141|consen 871 DDKGLDVADFSLGTSGIPIPLVNSVDNDEPPSCE----DSK--------RRFQYNDQVDI----SSVSRDFCSGCSCDG- 933 (1262)
T ss_pred cccccchhhhhccccCCCCccccccccCCCcccc----ccc--------eeecccccchh----hhhccccccccccCC-
Confidence 3445667899999999999999988864322111 111 12334332111 112245778999975
Q ss_pred CcC-CCCCCccccccccccccc---ccCCCCcCCCcccCCCCceeecCCceEEecCCCCCCCCCCCCcccccCceeeE--
Q 000729 1100 TCF-PETCDHVYLFDNDYEDAK---DIDGKSVHGRFPYDQTGRVILEEGYLIYECNHMCSCDRTCPNRVLQNGVRVKL-- 1173 (1326)
Q Consensus 1100 ~C~-~~~C~C~~l~~~~y~~~~---~~~g~~~~~~~~Yd~~G~l~~~~~~~i~EC~~~C~C~~~C~NRv~Q~g~~~~l-- 1173 (1326)
.|. .+.|.|.++.-....... ..+|...--.-+|+.|..+ ...++||++.|.|..+|.||++|++.+++.
T Consensus 934 hp~d~~~~~~~~~~~~~~~~cpp~~s~d~~~~~~eS~~~~ns~~----~~~f~e~~~hss~~~~e~~~~v~~~~~~~me~ 1009 (1262)
T KOG1141|consen 934 HPSDASKCECQQLSIEAMKRCPPNLSFDGHDELYESSEKQNSFL----KLFFFECNDHSSCHRKEYNRVVQNNIKYPMEV 1009 (1262)
T ss_pred CCcccCcccCCCCChhhhcCCCCccccCchhhhhhhhhhcchhh----hccceeccccchhcccccchhhhcCCccceee
Confidence 453 367877654321111100 0001000001122222221 235789999999999999999999988764
Q ss_pred ------EEEecCCCCccccccccccCCCeEEEeeeEEecHHHHHHhhcc----ccCCCcceEEecC--------------
Q 000729 1174 ------EVFKTENKGWAVRAGQAILRGTFVCEYIGEVLDELETNKRRSR----YGRDGCGYMLNIG-------------- 1229 (1326)
Q Consensus 1174 ------eVf~t~~kGwGVrA~e~I~~GtfI~EY~Gevit~~ea~~r~~~----y~~~~~~Ylf~l~-------------- 1229 (1326)
.||++...|||+++..||+.-+|||+|+|...++.-+.+.... |... .-+++..
T Consensus 1010 ~s~~~l~i~~~~~~~~~~~edtD~~~~~~~~~~~~~ppt~~l~~~~r~aqad~~sn~--~D~~~~~~l~es~~~~~T~~r 1087 (1262)
T KOG1141|consen 1010 SSFNDLQIFKTAQSGWGVREDTDIPQSTFICTYVGAPPTDDLADELRNAQADQYSND--LDLKDTVELEESREDHETDFR 1087 (1262)
T ss_pred eecccccccccccccccccccccCCCCcccccccCCCCchhhHHHHhhhhhccccCc--cchhhhhhhhhcccccccccC
Confidence 5777888999999999999999999999999887666543211 1000 0000000
Q ss_pred -------------ccc----------------c----cccc---------------------------------------
Q 000729 1230 -------------AHI----------------N----DMGR--------------------------------------- 1237 (1326)
Q Consensus 1230 -------------~~~----------------~----~~~~--------------------------------------- 1237 (1326)
... . .+.|
T Consensus 1088 ~~t~~~~~~~~~d~dd~q~I~k~ve~qd~~~~~~~T~~~~RQ~~~~s~k~~~~~s~~~~~~ts~~~~~~dkges~~~~~~ 1167 (1262)
T KOG1141|consen 1088 GDTSDYDDEEGSDGDDGQDIMKMVERQDSSESGEETKRLTRQKRKQSKKSGKGGSVEKDDTTSRDSMEKDKGESKDEPVF 1167 (1262)
T ss_pred CCCCCCcccccccCccHHHHHHHhhcccccccccccchhhhhhhhhhhhcccCccccccccCccchhhhccCccCccccc
Confidence 000 0 0000
Q ss_pred ----cccCceeEEEeccccCCccccccCCCCCCceEEEEEEecccCceeEEEEEEccCCCCCCeEEEecCCCC--CCCCC
Q 000729 1238 ----LIEGQVRYVIDATKYGNVSRFINHSCFPNLVNHQVLVESMDYQRAHIGLYASRDIAVGEELTYDYHYEL--LSGEG 1311 (1326)
Q Consensus 1238 ----~~~~~~~~~IDA~~~GNvaRFINHSC~PN~~~~~V~v~~~d~~~~~I~~fA~RdI~~GEELT~DYg~~~--~~~~~ 1311 (1326)
+.+...-|+|||+.-||++||+||||+||+.+|+|+++++|.++|++||||.+-|+||+||||||+|.. ...+.
T Consensus 1168 ~~~~y~~~~~~yvIDAk~eGNlGRfLNHSC~PNl~VQnVfvdTHdlrfPwVAFFt~kyVkAgtELTWDY~Ye~g~v~~ke 1247 (1262)
T KOG1141|consen 1168 NWDKYFEPFPLYVIDAKQEGNLGRFLNHSCDPNLHVQNVFVDTHDLRFPWVAFFTRKYVKAGTELTWDYQYEQGQVATKE 1247 (1262)
T ss_pred chhhccCCCceEEEecccccchhhhhccCCCccceeeeeeeeccccCCchhhhhhhhhhccCceeeeeccccccccccce
Confidence 001124699999999999999999999999999999999999999999999999999999999999985 45568
Q ss_pred ceeecCCCCCccccC
Q 000729 1312 YPCHCGASKCRGRLY 1326 (1326)
Q Consensus 1312 ~~C~CGs~~CRg~l~ 1326 (1326)
..|+||+.+|||+|+
T Consensus 1248 L~C~CGa~~CrgrLL 1262 (1262)
T KOG1141|consen 1248 LTCHCGAENCRGRLL 1262 (1262)
T ss_pred EEEecChhhhhcccC
Confidence 899999999999986
No 29
>PHA00733 hypothetical protein
Probab=98.39 E-value=2e-07 Score=94.76 Aligned_cols=83 Identities=23% Similarity=0.431 Sum_probs=69.4
Q ss_pred CCCcccCCCCCcccCChhhHhhh--h---hhccCccccccCCccccCccccccCChhHHHhHhhhccccccccccccccc
Q 000729 636 DEKTHKCKICSQVFLHDQELGVH--W---MDNHKKEAQWLFRGYACAICLDSFTNKKVLESHVQERHHVQFVEQCMLQQC 710 (1326)
Q Consensus 636 ~ekpfkC~~CgK~F~~~s~L~~H--~---~~~Ht~e~~~~~kpy~C~~CgKsF~sks~L~~H~r~Hh~e~~~~~~kpfkC 710 (1326)
.++++.|.+|.+.|.....|..| + +..| +. +||.|+.|++.|.+...|..|++.|. .+|.|
T Consensus 37 ~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~-~~-----kPy~C~~Cgk~Fss~s~L~~H~r~h~--------~~~~C 102 (128)
T PHA00733 37 EQKRLIRAVVKTLIYNPQLLDESSYLYKLLTSK-AV-----SPYVCPLCLMPFSSSVSLKQHIRYTE--------HSKVC 102 (128)
T ss_pred hhhhHHHHHHhhhccChhhhcchHHHHhhcccC-CC-----CCccCCCCCCcCCCHHHHHHHHhcCC--------cCccC
Confidence 47889999999999888777665 1 2233 34 89999999999999999999998752 45889
Q ss_pred cCCCCccCChhHHhhhhhhccc
Q 000729 711 IPCGSHFGNTEELWLHVQSVHA 732 (1326)
Q Consensus 711 ~~Cgk~F~sks~L~~Hv~r~H~ 732 (1326)
+.|++.|.....|..|+...|.
T Consensus 103 ~~CgK~F~~~~sL~~H~~~~h~ 124 (128)
T PHA00733 103 PVCGKEFRNTDSTLDHVCKKHN 124 (128)
T ss_pred CCCCCccCCHHHHHHHHHHhcC
Confidence 9999999999999999887775
No 30
>KOG3993 consensus Transcription factor (contains Zn finger) [Transcription]
Probab=98.24 E-value=3.3e-07 Score=105.51 Aligned_cols=179 Identities=16% Similarity=0.111 Sum_probs=110.1
Q ss_pred CcccCCCCCcccCChhhHhhhhhhccCccccccCCccccCccccccCChhHHHhHhhhcccccccc--------------
Q 000729 638 KTHKCKICSQVFLHDQELGVHWMDNHKKEAQWLFRGYACAICLDSFTNKKVLESHVQERHHVQFVE-------------- 703 (1326)
Q Consensus 638 kpfkC~~CgK~F~~~s~L~~H~~~~Ht~e~~~~~kpy~C~~CgKsF~sks~L~~H~r~Hh~e~~~~-------------- 703 (1326)
.-|.|..|...|.+...|.+| +-.-.-. --|+|+.|+|.|.-..+|..|.|.|.......
T Consensus 266 GdyiCqLCK~kYeD~F~LAQH-rC~RIV~-----vEYrCPEC~KVFsCPANLASHRRWHKPR~eaa~a~~~P~k~~~~~r 339 (500)
T KOG3993|consen 266 GDYICQLCKEKYEDAFALAQH-RCPRIVH-----VEYRCPECDKVFSCPANLASHRRWHKPRPEAAKAGSPPPKQAVETR 339 (500)
T ss_pred HHHHHHHHHHhhhhHHHHhhc-cCCeeEE-----eeecCCcccccccCchhhhhhhcccCCchhhhhcCCCChhhhhhhh
Confidence 349999999999999999999 4322221 34999999999999999999999987542211
Q ss_pred -------------ccccccccCCCCccCChhHHhhhhhhcccCcccchhhhhhcccc-cCCCCCccccCCCchhhhhhhh
Q 000729 704 -------------QCMLQQCIPCGSHFGNTEELWLHVQSVHAIDFKMSEVAQQHNQS-VGEDSPKKLELGYSASVENHSE 769 (1326)
Q Consensus 704 -------------~~kpfkC~~Cgk~F~sks~L~~Hv~r~H~~ef~C~~C~k~f~~~-~~ekp~~C~~Cgk~~sL~~Hlr 769 (1326)
.+..|.|.+|+|.|.+...|+.| +..|...-.-..-.-.|... ...--+.|..|...+.+. .
T Consensus 340 ae~~ea~rsg~dss~gi~~C~~C~KkFrRqAYLrKH-qlthq~~~~~k~~a~~f~~s~~~~l~~~~~~~a~h~~a~---~ 415 (500)
T KOG3993|consen 340 AEVQEAERSGDDSSSGIFSCHTCGKKFRRQAYLRKH-QLTHQRAPLAKEKAPKFLLSRVIPLMHFNQAVATHSSAS---D 415 (500)
T ss_pred hhhhhccccCCcccCceeecHHhhhhhHHHHHHHHh-HHhhhccccchhcccCcchhhcccccccccccccccccc---c
Confidence 12469999999999999999999 55553210000000000000 001112223333222111 1
Q ss_pred hcCCc--------ceeeecccCCccCChhHHHHHHHhhccCCCCCCCCCcccCcCCcccCCchhhhccccc
Q 000729 770 NLGSI--------RKFICRFCGLKFDLLPDLGRHHQAAHMGPNLVNSRPHKKGIRFYAYKLKSGRLSRPRF 832 (1326)
Q Consensus 770 ~Htge--------KpfkC~~CgKsF~sks~L~rHH~r~Htg~~~~~ekpykC~~C~ksF~~ks~L~~H~r~ 832 (1326)
+|..+ .-..|++||-.+.++..-.. +.+.-.. +.-|.|.+|.-+|....+|.+|+..
T Consensus 416 ~~g~~vl~~a~sael~~pp~~~~ppsss~~sgg-~~rlg~~-----~q~f~~ky~~atfyss~~ltrhin~ 480 (500)
T KOG3993|consen 416 SHGDEVLYVAGSAELELPPYDGSPPSSSGSSGG-YGRLGIA-----EQGFTCKYCPATFYSSPGLTRHINK 480 (500)
T ss_pred ccccceeeeeccccccCCCCCCCCcccCCCCCc-cccccch-----hhccccccchHhhhcCcchHhHhhh
Confidence 12111 22357778877776655544 2222222 5678888888888888888888743
No 31
>KOG3993 consensus Transcription factor (contains Zn finger) [Transcription]
Probab=98.15 E-value=9.5e-07 Score=101.87 Aligned_cols=171 Identities=19% Similarity=0.233 Sum_probs=113.1
Q ss_pred cccCccccccCChhHHHhHhhhccccccccccccccccCCCCccCChhHHhhhhhhcccCcccchhhhhhcccccCCCCC
Q 000729 674 YACAICLDSFTNKKVLESHVQERHHVQFVEQCMLQQCIPCGSHFGNTEELWLHVQSVHAIDFKMSEVAQQHNQSVGEDSP 753 (1326)
Q Consensus 674 y~C~~CgKsF~sks~L~~H~r~Hh~e~~~~~~kpfkC~~Cgk~F~sks~L~~Hv~r~H~~ef~C~~C~k~f~~~~~ekp~ 753 (1326)
|.|..|...|.....|.+|.-...-. --|+|++|+|.|.-..+|..| ++.|...- .-.+ .+..+.
T Consensus 268 yiCqLCK~kYeD~F~LAQHrC~RIV~------vEYrCPEC~KVFsCPANLASH-RRWHKPR~---eaa~-----a~~~P~ 332 (500)
T KOG3993|consen 268 YICQLCKEKYEDAFALAQHRCPRIVH------VEYRCPECDKVFSCPANLASH-RRWHKPRP---EAAK-----AGSPPP 332 (500)
T ss_pred HHHHHHHHhhhhHHHHhhccCCeeEE------eeecCCcccccccCchhhhhh-hcccCCch---hhhh-----cCCCCh
Confidence 99999999999999999996322211 238899999999999999999 99996220 0000 111111
Q ss_pred ccccCCCchhhhhhhh--hcCCcceeeecccCCccCChhHHHHHHHhhccCCCCC-------------------------
Q 000729 754 KKLELGYSASVENHSE--NLGSIRKFICRFCGLKFDLLPDLGRHHQAAHMGPNLV------------------------- 806 (1326)
Q Consensus 754 ~C~~Cgk~~sL~~Hlr--~HtgeKpfkC~~CgKsF~sks~L~rHH~r~Htg~~~~------------------------- 806 (1326)
+-. -......+.-.| ....+.-|.|.+|+|.|.+...|++ |+.+|......
T Consensus 333 k~~-~~~rae~~ea~rsg~dss~gi~~C~~C~KkFrRqAYLrK-Hqlthq~~~~~k~~a~~f~~s~~~~l~~~~~~~a~h 410 (500)
T KOG3993|consen 333 KQA-VETRAEVQEAERSGDDSSSGIFSCHTCGKKFRRQAYLRK-HQLTHQRAPLAKEKAPKFLLSRVIPLMHFNQAVATH 410 (500)
T ss_pred hhh-hhhhhhhhhccccCCcccCceeecHHhhhhhHHHHHHHH-hHHhhhccccchhcccCcchhhcccccccccccccc
Confidence 100 000000000001 0122357999999999999999999 66666531100
Q ss_pred ----------------CCCCcccCcCCcccCCchhhhcccccccCCCcccCCCCCccCCChHHHHhhcccc
Q 000729 807 ----------------NSRPHKKGIRFYAYKLKSGRLSRPRFKKGLGAVSYRIRNRGAAGMKKRIQTLKPL 861 (1326)
Q Consensus 807 ----------------~ekpykC~~C~ksF~~ks~L~~H~r~H~gekpy~C~~Cgk~Fs~~~~L~kH~ksH 861 (1326)
...-..|++|+-.+..+..--.|.+--..+..|.|++|.-.|.....|.+|....
T Consensus 411 ~~a~~~~g~~vl~~a~sael~~pp~~~~ppsss~~sgg~~rlg~~~q~f~~ky~~atfyss~~ltrhin~~ 481 (500)
T KOG3993|consen 411 SSASDSHGDEVLYVAGSAELELPPYDGSPPSSSGSSGGYGRLGIAEQGFTCKYCPATFYSSPGLTRHINKC 481 (500)
T ss_pred cccccccccceeeeeccccccCCCCCCCCcccCCCCCccccccchhhccccccchHhhhcCcchHhHhhhc
Confidence 0223456777777777777666766666667799999999999999999998743
No 32
>PHA02768 hypothetical protein; Provisional
Probab=98.14 E-value=5e-07 Score=77.60 Aligned_cols=43 Identities=14% Similarity=0.084 Sum_probs=25.3
Q ss_pred eeecccCCccCChhHHHHHHHhhccCCCCCCCCCcccCcCCcccCCchhhh
Q 000729 777 FICRFCGLKFDLLPDLGRHHQAAHMGPNLVNSRPHKKGIRFYAYKLKSGRL 827 (1326)
Q Consensus 777 fkC~~CgKsF~sks~L~rHH~r~Htg~~~~~ekpykC~~C~ksF~~ks~L~ 827 (1326)
|+|+.||+.|.+.++|.. |+++|+. +|+|..|++.|.+.+.|.
T Consensus 6 y~C~~CGK~Fs~~~~L~~-H~r~H~k-------~~kc~~C~k~f~~~s~l~ 48 (55)
T PHA02768 6 YECPICGEIYIKRKSMIT-HLRKHNT-------NLKLSNCKRISLRTGEYI 48 (55)
T ss_pred cCcchhCCeeccHHHHHH-HHHhcCC-------cccCCcccceecccceeE
Confidence 566666666666666666 5555552 556666666666555543
No 33
>PHA02768 hypothetical protein; Provisional
Probab=98.11 E-value=1.5e-06 Score=74.75 Aligned_cols=45 Identities=11% Similarity=-0.033 Sum_probs=41.6
Q ss_pred CcccCcCCcccCCchhhhcccccccCCCcccCCCCCccCCChHHHHh
Q 000729 810 PHKKGIRFYAYKLKSGRLSRPRFKKGLGAVSYRIRNRGAAGMKKRIQ 856 (1326)
Q Consensus 810 pykC~~C~ksF~~ks~L~~H~r~H~gekpy~C~~Cgk~Fs~~~~L~k 856 (1326)
.|+|+.||+.|.+.++|..|+++|+ ++|+|..|++.|.+.+.|+.
T Consensus 5 ~y~C~~CGK~Fs~~~~L~~H~r~H~--k~~kc~~C~k~f~~~s~l~~ 49 (55)
T PHA02768 5 GYECPICGEIYIKRKSMITHLRKHN--TNLKLSNCKRISLRTGEYIE 49 (55)
T ss_pred ccCcchhCCeeccHHHHHHHHHhcC--CcccCCcccceecccceeEE
Confidence 5899999999999999999999999 79999999999998877754
No 34
>KOG2461 consensus Transcription factor BLIMP-1/PRDI-BF1, contains C2H2-type Zn-finger and SET domains [Transcription]
Probab=97.93 E-value=9.6e-06 Score=96.70 Aligned_cols=114 Identities=26% Similarity=0.305 Sum_probs=85.4
Q ss_pred ceeeEEEEecC--CCCccccccccccCCCeEEEeeeEEecHHHHHHhhccccCCCcceEEecCcccccccccccCceeEE
Q 000729 1169 VRVKLEVFKTE--NKGWAVRAGQAILRGTFVCEYIGEVLDELETNKRRSRYGRDGCGYMLNIGAHINDMGRLIEGQVRYV 1246 (1326)
Q Consensus 1169 ~~~~leVf~t~--~kGwGVrA~e~I~~GtfI~EY~Gevit~~ea~~r~~~y~~~~~~Ylf~l~~~~~~~~~~~~~~~~~~ 1246 (1326)
+...|.|+.+. ..|.||++...|++|+--+-|.|+++.... ....+..|++.|-.. ++..++
T Consensus 26 LP~~l~i~~Ssv~~~~lgV~s~~~i~~G~~FGP~~G~~~~~~~-------~~~~n~~y~W~I~~~---------d~~~~~ 89 (396)
T KOG2461|consen 26 LPPELRIKPSSVPVTGLGVWSNASILPGTSFGPFEGEIIASID-------SKSANNRYMWEIFSS---------DNGYEY 89 (396)
T ss_pred CCCceEeeccccCCccccccccccccCcccccCccCccccccc-------cccccCcceEEEEeC---------CCceEE
Confidence 66778888874 578999999999999999999999821111 011234466655431 124689
Q ss_pred Eeccc--cCCccccccCCCC---CCceEEEEEEecccCceeEEEEEEccCCCCCCeEEEecCCCC
Q 000729 1247 IDATK--YGNVSRFINHSCF---PNLVNHQVLVESMDYQRAHIGLYASRDIAVGEELTYDYHYEL 1306 (1326)
Q Consensus 1247 IDA~~--~GNvaRFINHSC~---PN~~~~~V~v~~~d~~~~~I~~fA~RdI~~GEELT~DYg~~~ 1306 (1326)
||++. ..|+.||+|=+++ -|+.+... .-.|.++|+|+|++||||.+.|+.++
T Consensus 90 iDg~d~~~sNWmRYV~~Ar~~eeQNL~A~Q~--------~~~Ifyrt~r~I~p~eELlVWY~~e~ 146 (396)
T KOG2461|consen 90 IDGTDEEHSNWMRYVNSARSEEEQNLLAFQI--------GENIFYRTIRDIRPNEELLVWYGSEY 146 (396)
T ss_pred eccCChhhcceeeeecccCChhhhhHHHHhc--------cCceEEEecccCCCCCeEEEEeccch
Confidence 99885 7999999999998 58776432 23488999999999999999999876
No 35
>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A ....
Probab=97.68 E-value=1.8e-05 Score=58.30 Aligned_cols=24 Identities=21% Similarity=0.654 Sum_probs=12.6
Q ss_pred hhhhhhhcCCcceeeecccCCccC
Q 000729 764 VENHSENLGSIRKFICRFCGLKFD 787 (1326)
Q Consensus 764 L~~Hlr~HtgeKpfkC~~CgKsF~ 787 (1326)
|..|+++|++++||+|++|++.|.
T Consensus 2 l~~H~~~H~~~k~~~C~~C~k~F~ 25 (26)
T PF13465_consen 2 LRRHMRTHTGEKPYKCPYCGKSFS 25 (26)
T ss_dssp HHHHHHHHSSSSSEEESSSSEEES
T ss_pred HHHHhhhcCCCCCCCCCCCcCeeC
Confidence 445555555555555555555553
No 36
>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A ....
Probab=97.44 E-value=7.7e-05 Score=54.95 Aligned_cols=25 Identities=28% Similarity=0.402 Sum_probs=17.5
Q ss_pred HHHHHHHhhccCCCCCCCCCcccCcCCcccC
Q 000729 791 DLGRHHQAAHMGPNLVNSRPHKKGIRFYAYK 821 (1326)
Q Consensus 791 ~L~rHH~r~Htg~~~~~ekpykC~~C~ksF~ 821 (1326)
+|.+ |+++|+| ++||+|++|+++|.
T Consensus 1 ~l~~-H~~~H~~-----~k~~~C~~C~k~F~ 25 (26)
T PF13465_consen 1 NLRR-HMRTHTG-----EKPYKCPYCGKSFS 25 (26)
T ss_dssp HHHH-HHHHHSS-----SSSEEESSSSEEES
T ss_pred CHHH-HhhhcCC-----CCCCCCCCCcCeeC
Confidence 3666 6667777 67777777777775
No 37
>PHA00732 hypothetical protein
Probab=97.42 E-value=9.8e-05 Score=69.00 Aligned_cols=47 Identities=21% Similarity=0.218 Sum_probs=27.5
Q ss_pred eeeecccCCccCChhHHHHHHHh-hccCCCCCCCCCcccCcCCcccCCchhhhccccccc
Q 000729 776 KFICRFCGLKFDLLPDLGRHHQA-AHMGPNLVNSRPHKKGIRFYAYKLKSGRLSRPRFKK 834 (1326)
Q Consensus 776 pfkC~~CgKsF~sks~L~rHH~r-~Htg~~~~~ekpykC~~C~ksF~~ks~L~~H~r~H~ 834 (1326)
||+|+.||+.|.+..+|.+ |++ .|++ +.|+.|++.|. .|..|.+++.
T Consensus 1 py~C~~Cgk~F~s~s~Lk~-H~r~~H~~--------~~C~~CgKsF~---~l~~H~~~~~ 48 (79)
T PHA00732 1 MFKCPICGFTTVTLFALKQ-HARRNHTL--------TKCPVCNKSYR---RLNQHFYSQY 48 (79)
T ss_pred CccCCCCCCccCCHHHHHH-HhhcccCC--------CccCCCCCEeC---ChhhhhcccC
Confidence 4666666666666666666 444 3433 35666666665 3555654443
No 38
>PHA00616 hypothetical protein
Probab=97.36 E-value=3.7e-05 Score=63.30 Aligned_cols=34 Identities=15% Similarity=0.161 Sum_probs=19.6
Q ss_pred eeeecccCCccCChhHHHHHHHhhccCCCCCCCCCcccCc
Q 000729 776 KFICRFCGLKFDLLPDLGRHHQAAHMGPNLVNSRPHKKGI 815 (1326)
Q Consensus 776 pfkC~~CgKsF~sks~L~rHH~r~Htg~~~~~ekpykC~~ 815 (1326)
||+|+.||+.|..+++|.+ |++.|+| ++++.|++
T Consensus 1 pYqC~~CG~~F~~~s~l~~-H~r~~hg-----~~~~~~~~ 34 (44)
T PHA00616 1 MYQCLRCGGIFRKKKEVIE-HLLSVHK-----QNKLTLEY 34 (44)
T ss_pred CCccchhhHHHhhHHHHHH-HHHHhcC-----CCccceeE
Confidence 4556666666666666666 5555555 55555553
No 39
>PHA00732 hypothetical protein
Probab=97.20 E-value=0.00018 Score=67.20 Aligned_cols=47 Identities=11% Similarity=-0.087 Sum_probs=39.7
Q ss_pred CcccCcCCcccCCchhhhccccc-ccCCCcccCCCCCccCCChHHHHhhccccC
Q 000729 810 PHKKGIRFYAYKLKSGRLSRPRF-KKGLGAVSYRIRNRGAAGMKKRIQTLKPLA 862 (1326)
Q Consensus 810 pykC~~C~ksF~~ks~L~~H~r~-H~gekpy~C~~Cgk~Fs~~~~L~kH~ksH~ 862 (1326)
||.|+.|++.|.+.+.|..|++. |+ ++.|+.|++.|. .+..|.+++.
T Consensus 1 py~C~~Cgk~F~s~s~Lk~H~r~~H~---~~~C~~CgKsF~---~l~~H~~~~~ 48 (79)
T PHA00732 1 MFKCPICGFTTVTLFALKQHARRNHT---LTKCPVCNKSYR---RLNQHFYSQY 48 (79)
T ss_pred CccCCCCCCccCCHHHHHHHhhcccC---CCccCCCCCEeC---ChhhhhcccC
Confidence 68999999999999999999985 65 368999999998 4667776553
No 40
>PHA00616 hypothetical protein
Probab=97.18 E-value=0.00013 Score=60.09 Aligned_cols=34 Identities=3% Similarity=-0.224 Sum_probs=32.3
Q ss_pred CcccCcCCcccCCchhhhcccccccCCCcccCCC
Q 000729 810 PHKKGIRFYAYKLKSGRLSRPRFKKGLGAVSYRI 843 (1326)
Q Consensus 810 pykC~~C~ksF~~ks~L~~H~r~H~gekpy~C~~ 843 (1326)
||+|+.||+.|.+++.|.+|++.|+|++++.|+.
T Consensus 1 pYqC~~CG~~F~~~s~l~~H~r~~hg~~~~~~~~ 34 (44)
T PHA00616 1 MYQCLRCGGIFRKKKEVIEHLLSVHKQNKLTLEY 34 (44)
T ss_pred CCccchhhHHHhhHHHHHHHHHHhcCCCccceeE
Confidence 7999999999999999999999999999999864
No 41
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=97.13 E-value=0.00039 Score=60.25 Aligned_cols=52 Identities=27% Similarity=0.587 Sum_probs=35.2
Q ss_pred cccCCCCCcccCChhhHhhhhhhccCccccccCCccccCccccccCChhHHHhHhhhcc
Q 000729 639 THKCKICSQVFLHDQELGVHWMDNHKKEAQWLFRGYACAICLDSFTNKKVLESHVQERH 697 (1326)
Q Consensus 639 pfkC~~CgK~F~~~s~L~~H~~~~Ht~e~~~~~kpy~C~~CgKsF~sks~L~~H~r~Hh 697 (1326)
.|.||.|++ ..+...|..|+...|..+. +.+.|++|...+. .+|..|+..+|
T Consensus 2 ~f~CP~C~~-~~~~~~L~~H~~~~H~~~~----~~v~CPiC~~~~~--~~l~~Hl~~~H 53 (54)
T PF05605_consen 2 SFTCPYCGK-GFSESSLVEHCEDEHRSES----KNVVCPICSSRVT--DNLIRHLNSQH 53 (54)
T ss_pred CcCCCCCCC-ccCHHHHHHHHHhHCcCCC----CCccCCCchhhhh--hHHHHHHHHhc
Confidence 477777877 4456677777777777652 5677777777544 37777776655
No 42
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=97.03 E-value=0.00042 Score=60.06 Aligned_cols=53 Identities=17% Similarity=0.188 Sum_probs=42.0
Q ss_pred eeeecccCCccCChhHHHHHHHhhccCCCCCCCCCcccCcCCcccCCchhhhcccccccC
Q 000729 776 KFICRFCGLKFDLLPDLGRHHQAAHMGPNLVNSRPHKKGIRFYAYKLKSGRLSRPRFKKG 835 (1326)
Q Consensus 776 pfkC~~CgKsF~sks~L~rHH~r~Htg~~~~~ekpykC~~C~ksF~~ks~L~~H~r~H~g 835 (1326)
.|.|++|++. .+...|..|....|..+ .+.+.|++|...+. .+|..|+..+++
T Consensus 2 ~f~CP~C~~~-~~~~~L~~H~~~~H~~~----~~~v~CPiC~~~~~--~~l~~Hl~~~H~ 54 (54)
T PF05605_consen 2 SFTCPYCGKG-FSESSLVEHCEDEHRSE----SKNVVCPICSSRVT--DNLIRHLNSQHR 54 (54)
T ss_pred CcCCCCCCCc-cCHHHHHHHHHhHCcCC----CCCccCCCchhhhh--hHHHHHHHHhcC
Confidence 4889999994 55788999888888874 46799999998655 488889876653
No 43
>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
Probab=96.62 E-value=0.001 Score=74.83 Aligned_cols=58 Identities=19% Similarity=0.278 Sum_probs=44.1
Q ss_pred Ccceeeecc--cCCccCChhHHHHHHHhhccCCCC-------------CCCCCcccCcCCcccCCchhhhccc
Q 000729 773 SIRKFICRF--CGLKFDLLPDLGRHHQAAHMGPNL-------------VNSRPHKKGIRFYAYKLKSGRLSRP 830 (1326)
Q Consensus 773 geKpfkC~~--CgKsF~sks~L~rHH~r~Htg~~~-------------~~ekpykC~~C~ksF~~ks~L~~H~ 830 (1326)
++|||+|++ |.|.|++...|+-|.+.-|..+.+ +..|||.|++|+|+|+....|+.|.
T Consensus 346 d~KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~p~p~~~~~F~~~~KPYrCevC~KRYKNlNGLKYHr 418 (423)
T COG5189 346 DGKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEVCDKRYKNLNGLKYHR 418 (423)
T ss_pred cCceecCCCCCchhhhccccchhhhhhccccCcccCCCCCccccccccccCCceeccccchhhccCccceecc
Confidence 359999976 999999999999976666643211 2357888888888888888888875
No 44
>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
Probab=96.23 E-value=0.0017 Score=73.27 Aligned_cols=67 Identities=19% Similarity=0.400 Sum_probs=42.5
Q ss_pred CCcccCCC--CCcccCChhhHhhhhhhccCccccccCCccccC--ccccccCChhHHHhHhhhccccccccccccccccC
Q 000729 637 EKTHKCKI--CSQVFLHDQELGVHWMDNHKKEAQWLFRGYACA--ICLDSFTNKKVLESHVQERHHVQFVEQCMLQQCIP 712 (1326)
Q Consensus 637 ekpfkC~~--CgK~F~~~s~L~~H~~~~Ht~e~~~~~kpy~C~--~CgKsF~sks~L~~H~r~Hh~e~~~~~~kpfkC~~ 712 (1326)
+|||+|++ |.|.|.....|+-|+.--|... +...=+ +=-..| ....|||+|++
T Consensus 347 ~KpykCpV~gC~K~YknqnGLKYH~lhGH~~~-----~~~~~p~p~~~~~F------------------~~~~KPYrCev 403 (423)
T COG5189 347 GKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQ-----KLHENPSPEKMNIF------------------SAKDKPYRCEV 403 (423)
T ss_pred CceecCCCCCchhhhccccchhhhhhccccCc-----ccCCCCCccccccc------------------cccCCceeccc
Confidence 59999987 9999999999999965555332 111110 000111 11227777777
Q ss_pred CCCccCChhHHhhh
Q 000729 713 CGSHFGNTEELWLH 726 (1326)
Q Consensus 713 Cgk~F~sks~L~~H 726 (1326)
|+|.+.+...|+-|
T Consensus 404 C~KRYKNlNGLKYH 417 (423)
T COG5189 404 CDKRYKNLNGLKYH 417 (423)
T ss_pred cchhhccCccceec
Confidence 77777777777777
No 45
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=95.88 E-value=0.0047 Score=43.79 Aligned_cols=23 Identities=35% Similarity=0.782 Sum_probs=15.5
Q ss_pred eeecccCCccCChhHHHHHHHhhc
Q 000729 777 FICRFCGLKFDLLPDLGRHHQAAH 800 (1326)
Q Consensus 777 fkC~~CgKsF~sks~L~rHH~r~H 800 (1326)
|+|+.|++.|.++..|.+ |++.|
T Consensus 1 y~C~~C~~~f~~~~~l~~-H~~~H 23 (23)
T PF00096_consen 1 YKCPICGKSFSSKSNLKR-HMRRH 23 (23)
T ss_dssp EEETTTTEEESSHHHHHH-HHHHH
T ss_pred CCCCCCCCccCCHHHHHH-HHhHC
Confidence 567777777777777777 44444
No 46
>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A.
Probab=95.80 E-value=0.0052 Score=58.80 Aligned_cols=72 Identities=22% Similarity=0.422 Sum_probs=17.6
Q ss_pred cccCCCCccCChhHHhhhhhhcccCcccchhhhhhcccccCCCCCccccCCCchhhhhhhhhcCCcceeeecccCCccCC
Q 000729 709 QCIPCGSHFGNTEELWLHVQSVHAIDFKMSEVAQQHNQSVGEDSPKKLELGYSASVENHSENLGSIRKFICRFCGLKFDL 788 (1326)
Q Consensus 709 kC~~Cgk~F~sks~L~~Hv~r~H~~ef~C~~C~k~f~~~~~ekp~~C~~Cgk~~sL~~Hlr~HtgeKpfkC~~CgKsF~s 788 (1326)
+|..|+..|.+...|..|+...|.-.+. ..........+..+.+.. -...+.|..|++.|.+
T Consensus 1 ~C~~C~~~f~~~~~l~~H~~~~H~~~~~-----------------~~~~l~~~~~~~~~~~~~-~~~~~~C~~C~~~f~s 62 (100)
T PF12756_consen 1 QCLFCDESFSSVDDLLQHMKKKHGFDIP-----------------DQKYLVDPNRLLNYLRKK-VKESFRCPYCNKTFRS 62 (100)
T ss_dssp ------------------------------------------------------------------SSEEBSSSS-EESS
T ss_pred Cccccccccccccccccccccccccccc-----------------cccccccccccccccccc-cCCCCCCCccCCCCcC
Confidence 4999999999999999998888862211 000000111222222211 1136888888888888
Q ss_pred hhHHHHHHHhh
Q 000729 789 LPDLGRHHQAA 799 (1326)
Q Consensus 789 ks~L~rHH~r~ 799 (1326)
...|.. |++.
T Consensus 63 ~~~l~~-Hm~~ 72 (100)
T PF12756_consen 63 REALQE-HMRS 72 (100)
T ss_dssp HHHHHH-HHHH
T ss_pred HHHHHH-HHcC
Confidence 888888 4444
No 47
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=95.71 E-value=0.0048 Score=43.72 Aligned_cols=20 Identities=40% Similarity=0.830 Sum_probs=8.6
Q ss_pred ccCccccccCChhHHHhHhh
Q 000729 675 ACAICLDSFTNKKVLESHVQ 694 (1326)
Q Consensus 675 ~C~~CgKsF~sks~L~~H~r 694 (1326)
.|+.|++.|.++..|..|++
T Consensus 2 ~C~~C~~~f~~~~~l~~H~~ 21 (23)
T PF00096_consen 2 KCPICGKSFSSKSNLKRHMR 21 (23)
T ss_dssp EETTTTEEESSHHHHHHHHH
T ss_pred CCCCCCCccCCHHHHHHHHh
Confidence 34444444444444444443
No 48
>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A.
Probab=95.71 E-value=0.0047 Score=59.12 Aligned_cols=73 Identities=19% Similarity=0.302 Sum_probs=19.6
Q ss_pred cCCCCCcccCChhhHhhhhhhccCccccccCCccccCccccccCChhHHHhHhhhccccccccccccccccCCCCccCCh
Q 000729 641 KCKICSQVFLHDQELGVHWMDNHKKEAQWLFRGYACAICLDSFTNKKVLESHVQERHHVQFVEQCMLQQCIPCGSHFGNT 720 (1326)
Q Consensus 641 kC~~CgK~F~~~s~L~~H~~~~Ht~e~~~~~kpy~C~~CgKsF~sks~L~~H~r~Hh~e~~~~~~kpfkC~~Cgk~F~sk 720 (1326)
+|..|+..|.+...|..||...|.-. .+ ....+.....+..+.+.... ..+.|..|++.|.+.
T Consensus 1 ~C~~C~~~f~~~~~l~~H~~~~H~~~-----~~-----~~~~l~~~~~~~~~~~~~~~-------~~~~C~~C~~~f~s~ 63 (100)
T PF12756_consen 1 QCLFCDESFSSVDDLLQHMKKKHGFD-----IP-----DQKYLVDPNRLLNYLRKKVK-------ESFRCPYCNKTFRSR 63 (100)
T ss_dssp -----------------------------------------------------------------SSEEBSSSS-EESSH
T ss_pred Cccccccccccccccccccccccccc-----cc-----cccccccccccccccccccC-------CCCCCCccCCCCcCH
Confidence 59999999999999999987888654 11 11222234444444432221 247799999999999
Q ss_pred hHHhhhhhhc
Q 000729 721 EELWLHVQSV 730 (1326)
Q Consensus 721 s~L~~Hv~r~ 730 (1326)
..|..||+..
T Consensus 64 ~~l~~Hm~~~ 73 (100)
T PF12756_consen 64 EALQEHMRSK 73 (100)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHcCc
Confidence 9999996543
No 49
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=95.02 E-value=0.013 Score=41.30 Aligned_cols=22 Identities=36% Similarity=0.738 Sum_probs=9.1
Q ss_pred ccCccccccCChhHHHhHhhhc
Q 000729 675 ACAICLDSFTNKKVLESHVQER 696 (1326)
Q Consensus 675 ~C~~CgKsF~sks~L~~H~r~H 696 (1326)
.|++|++.|.+...|..|++.|
T Consensus 2 ~C~~C~~~~~~~~~l~~H~~~~ 23 (24)
T PF13894_consen 2 QCPICGKSFRSKSELRQHMRTH 23 (24)
T ss_dssp E-SSTS-EESSHHHHHHHHHHH
T ss_pred CCcCCCCcCCcHHHHHHHHHhh
Confidence 3444444444444444444433
No 50
>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B.
Probab=94.68 E-value=0.012 Score=43.41 Aligned_cols=18 Identities=39% Similarity=0.752 Sum_probs=8.0
Q ss_pred eeecccCCccCChhHHHH
Q 000729 777 FICRFCGLKFDLLPDLGR 794 (1326)
Q Consensus 777 fkC~~CgKsF~sks~L~r 794 (1326)
|+|+.|++.|.+...|..
T Consensus 2 ~~C~~C~~~F~~~~~l~~ 19 (27)
T PF13912_consen 2 FECDECGKTFSSLSALRE 19 (27)
T ss_dssp EEETTTTEEESSHHHHHH
T ss_pred CCCCccCCccCChhHHHH
Confidence 444444444444444444
No 51
>KOG1146 consensus Homeobox protein [General function prediction only]
Probab=94.62 E-value=0.012 Score=77.32 Aligned_cols=177 Identities=15% Similarity=0.165 Sum_probs=101.6
Q ss_pred cCCCCCcccCChhhHhhhhhhccCccccccCCccccCccccccCChhHHHhHhhhccccccc------------------
Q 000729 641 KCKICSQVFLHDQELGVHWMDNHKKEAQWLFRGYACAICLDSFTNKKVLESHVQERHHVQFV------------------ 702 (1326)
Q Consensus 641 kC~~CgK~F~~~s~L~~H~~~~Ht~e~~~~~kpy~C~~CgKsF~sks~L~~H~r~Hh~e~~~------------------ 702 (1326)
.|..|+..+.+...+.-|+...|.-. +-|.|+.|+..|+....|..|||..|.+...
T Consensus 438 e~~~~e~~~~s~r~~~~~t~~L~S~~-----kt~~cpkc~~~yk~a~~L~vhmRskhp~~~~~~c~~gq~~~~~arg~~~ 512 (1406)
T KOG1146|consen 438 ELTKAEPLLESKRSLEGQTVVLHSFF-----KTLKCPKCNWHYKLAQTLGVHMRSKHPESQSAYCKAGQNHPRLARGEVY 512 (1406)
T ss_pred cccchhhhhhhhcccccceeeeeccc-----ccccCCccchhhhhHHHhhhcccccccccchhHhHhccccccccccccc
Confidence 46667777777777777766677766 7888999999999999999999885543211
Q ss_pred -cccccccccCCCCccCChhHHhhhhhhc-ccCcccchhhhhhcccccCC----CCC-ccccCCCchhhhhhhhh--cCC
Q 000729 703 -EQCMLQQCIPCGSHFGNTEELWLHVQSV-HAIDFKMSEVAQQHNQSVGE----DSP-KKLELGYSASVENHSEN--LGS 773 (1326)
Q Consensus 703 -~~~kpfkC~~Cgk~F~sks~L~~Hv~r~-H~~ef~C~~C~k~f~~~~~e----kp~-~C~~Cgk~~sL~~Hlr~--Htg 773 (1326)
...++|.|..|...+..+.+|-+|++.. |..+ .+......++ .+. .+..+.....+..-.-. -..
T Consensus 513 ~~~~~p~~C~~C~~stttng~LsihlqS~~h~~~------lee~~~~~g~~v~~~~~~v~s~~P~~ag~~~~ags~~pkt 586 (1406)
T KOG1146|consen 513 RCPGKPYPCRACNYSTTTNGNLSIHLQSDLHRNE------LEEAEENAGEQVRLLPASVTSAVPEEAGLGPSAGSSGPKT 586 (1406)
T ss_pred cCCCCcccceeeeeeeecchHHHHHHHHHhhHHH------HHHHHhccccchhhhhhhhcccCcccccCCCCCCCCCCCC
Confidence 1127899999999999999999997653 3211 0111111000 000 01111111110000000 111
Q ss_pred cceeeecccCCccCChhHHHHHHHhhccCCCCCCCCCcccCcCCcccCCchhhhcccccc
Q 000729 774 IRKFICRFCGLKFDLLPDLGRHHQAAHMGPNLVNSRPHKKGIRFYAYKLKSGRLSRPRFK 833 (1326)
Q Consensus 774 eKpfkC~~CgKsF~sks~L~rHH~r~Htg~~~~~ekpykC~~C~ksF~~ks~L~~H~r~H 833 (1326)
+-++.|..|+..-.-..+|+.|....|.- ..|.-|-.|+-.+.....+..|.+-+
T Consensus 587 kP~~~C~vc~yetniarnlrihmtss~~s-----~~p~~~Lq~~it~~l~~~~~~~~~lp 641 (1406)
T KOG1146|consen 587 KPSWRCEVCSYETNIARNLRIHMTASPSS-----SPPSLVLQQNITSSLASLLGGQGRLP 641 (1406)
T ss_pred CCCcchhhhcchhhhhhccccccccCCCC-----CChHHHhhhcchhhccccccCcCCCC
Confidence 12366777766666666666643333333 33456666666666666666666555
No 52
>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B.
Probab=94.54 E-value=0.018 Score=42.45 Aligned_cols=23 Identities=22% Similarity=0.600 Sum_probs=11.3
Q ss_pred cccCccccccCChhHHHhHhhhc
Q 000729 674 YACAICLDSFTNKKVLESHVQER 696 (1326)
Q Consensus 674 y~C~~CgKsF~sks~L~~H~r~H 696 (1326)
|.|..|++.|.+...|..|++.|
T Consensus 2 ~~C~~C~~~F~~~~~l~~H~~~h 24 (27)
T PF13912_consen 2 FECDECGKTFSSLSALREHKRSH 24 (27)
T ss_dssp EEETTTTEEESSHHHHHHHHCTT
T ss_pred CCCCccCCccCChhHHHHHhHHh
Confidence 44555555555555555554444
No 53
>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.71 E-value=0.078 Score=66.85 Aligned_cols=23 Identities=30% Similarity=0.602 Sum_probs=14.0
Q ss_pred cccCCCCccCChhHHhhhhhhcc
Q 000729 709 QCIPCGSHFGNTEELWLHVQSVH 731 (1326)
Q Consensus 709 kC~~Cgk~F~sks~L~~Hv~r~H 731 (1326)
.|..|...|.....|.+|++..|
T Consensus 184 ~C~~C~~~fld~~el~rH~~~~h 206 (669)
T KOG2231|consen 184 LCKFCHERFLDDDELYRHLRFDH 206 (669)
T ss_pred cchhhhhhhccHHHHHHhhccce
Confidence 36666666666666666644444
No 54
>smart00508 PostSET Cysteine-rich motif following a subset of SET domains.
Probab=93.54 E-value=0.034 Score=41.05 Aligned_cols=15 Identities=60% Similarity=1.325 Sum_probs=13.8
Q ss_pred CceeecCCCCCcccc
Q 000729 1311 GYPCHCGASKCRGRL 1325 (1326)
Q Consensus 1311 ~~~C~CGs~~CRg~l 1325 (1326)
.+.|+|||.+|||+|
T Consensus 2 ~~~C~CGs~~CRG~l 16 (26)
T smart00508 2 KQPCLCGAPNCRGFL 16 (26)
T ss_pred CeeeeCCCcccccee
Confidence 479999999999998
No 55
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=93.45 E-value=0.059 Score=37.90 Aligned_cols=18 Identities=33% Similarity=0.794 Sum_probs=10.8
Q ss_pred eeecccCCccCChhHHHH
Q 000729 777 FICRFCGLKFDLLPDLGR 794 (1326)
Q Consensus 777 fkC~~CgKsF~sks~L~r 794 (1326)
|.|++|++.|.+...|.+
T Consensus 1 ~~C~~C~~~~~~~~~l~~ 18 (24)
T PF13894_consen 1 FQCPICGKSFRSKSELRQ 18 (24)
T ss_dssp EE-SSTS-EESSHHHHHH
T ss_pred CCCcCCCCcCCcHHHHHH
Confidence 566666666666666666
No 56
>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.03 E-value=0.094 Score=66.16 Aligned_cols=17 Identities=35% Similarity=0.700 Sum_probs=9.9
Q ss_pred eecccCCccCChhHHHH
Q 000729 778 ICRFCGLKFDLLPDLGR 794 (1326)
Q Consensus 778 kC~~CgKsF~sks~L~r 794 (1326)
.|..|...|.....|.+
T Consensus 184 ~C~~C~~~fld~~el~r 200 (669)
T KOG2231|consen 184 LCKFCHERFLDDDELYR 200 (669)
T ss_pred cchhhhhhhccHHHHHH
Confidence 35556656655555555
No 57
>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.
Probab=92.75 E-value=0.036 Score=47.13 Aligned_cols=31 Identities=6% Similarity=-0.108 Sum_probs=14.3
Q ss_pred CCCcccCcCCcccCCchhhhcccccccCCCc
Q 000729 808 SRPHKKGIRFYAYKLKSGRLSRPRFKKGLGA 838 (1326)
Q Consensus 808 ekpykC~~C~ksF~~ks~L~~H~r~H~gekp 838 (1326)
+.|..|++|+..+++..+|++|+..+|+.||
T Consensus 22 ~~PatCP~C~a~~~~srnLrRHle~~H~~k~ 52 (54)
T PF09237_consen 22 EQPATCPICGAVIRQSRNLRRHLEIRHFKKP 52 (54)
T ss_dssp S--EE-TTT--EESSHHHHHHHHHHHTTTS-
T ss_pred CCCCCCCcchhhccchhhHHHHHHHHhcccC
Confidence 4555566666666666666666555555443
No 58
>PRK04860 hypothetical protein; Provisional
Probab=91.74 E-value=0.1 Score=55.41 Aligned_cols=40 Identities=15% Similarity=0.136 Sum_probs=30.2
Q ss_pred ceeeecccCCccCChhHHHHHHHhhccCCCCCCCCCcccCcCCcccCCch
Q 000729 775 RKFICRFCGLKFDLLPDLGRHHQAAHMGPNLVNSRPHKKGIRFYAYKLKS 824 (1326)
Q Consensus 775 KpfkC~~CgKsF~sks~L~rHH~r~Htg~~~~~ekpykC~~C~ksF~~ks 824 (1326)
-+|.|. |++ ....+.+ |.++|++ +++|.|..|+..|....
T Consensus 118 ~~Y~C~-C~~---~~~~~rr-H~ri~~g-----~~~YrC~~C~~~l~~~~ 157 (160)
T PRK04860 118 FPYRCK-CQE---HQLTVRR-HNRVVRG-----EAVYRCRRCGETLVFKG 157 (160)
T ss_pred EEEEcC-CCC---eeCHHHH-HHHHhcC-----CccEECCCCCceeEEec
Confidence 468887 887 6667777 7888888 77888888888776543
No 59
>KOG1146 consensus Homeobox protein [General function prediction only]
Probab=91.69 E-value=0.1 Score=69.22 Aligned_cols=157 Identities=14% Similarity=0.102 Sum_probs=104.1
Q ss_pred cCccccccCChhHHHhHhhhccccccccccccccccCCCCccCChhHHhhhhhhcccCcccchhhhhhcccccCCCCCcc
Q 000729 676 CAICLDSFTNKKVLESHVQERHHVQFVEQCMLQQCIPCGSHFGNTEELWLHVQSVHAIDFKMSEVAQQHNQSVGEDSPKK 755 (1326)
Q Consensus 676 C~~CgKsF~sks~L~~H~r~Hh~e~~~~~~kpfkC~~Cgk~F~sks~L~~Hv~r~H~~ef~C~~C~k~f~~~~~ekp~~C 755 (1326)
|.-|+..+.++..+.-|+..-+... +-|+|+.|+..|+....|..||+..|... .-..|.-
T Consensus 439 ~~~~e~~~~s~r~~~~~t~~L~S~~-----kt~~cpkc~~~yk~a~~L~vhmRskhp~~-~~~~c~~------------- 499 (1406)
T KOG1146|consen 439 LTKAEPLLESKRSLEGQTVVLHSFF-----KTLKCPKCNWHYKLAQTLGVHMRSKHPES-QSAYCKA------------- 499 (1406)
T ss_pred ccchhhhhhhhcccccceeeeeccc-----ccccCCccchhhhhHHHhhhccccccccc-chhHhHh-------------
Confidence 5556666777777777766444332 67899999999999999999988878522 1111111
Q ss_pred ccCCCchhhhhhhhh------cCCcceeeecccCCccCChhHHHHHHHhh-ccC------------------C-------
Q 000729 756 LELGYSASVENHSEN------LGSIRKFICRFCGLKFDLLPDLGRHHQAA-HMG------------------P------- 803 (1326)
Q Consensus 756 ~~Cgk~~sL~~Hlr~------HtgeKpfkC~~CgKsF~sks~L~rHH~r~-Htg------------------~------- 803 (1326)
.+.|.+. -.+.+||.|..|..++..+.+|.+|.+.. |.. .
T Consensus 500 --------gq~~~~~arg~~~~~~~~p~~C~~C~~stttng~LsihlqS~~h~~~lee~~~~~g~~v~~~~~~v~s~~P~ 571 (1406)
T KOG1146|consen 500 --------GQNHPRLARGEVYRCPGKPYPCRACNYSTTTNGNLSIHLQSDLHRNELEEAEENAGEQVRLLPASVTSAVPE 571 (1406)
T ss_pred --------ccccccccccccccCCCCcccceeeeeeeecchHHHHHHHHHhhHHHHHHHHhccccchhhhhhhhcccCcc
Confidence 1111111 12337899999999999999999964332 110 0
Q ss_pred -----------CCCCCCCcccCcCCcccCCchhhhcccc-cccCCCcccCCCCCccCCChHHHHhhcc
Q 000729 804 -----------NLVNSRPHKKGIRFYAYKLKSGRLSRPR-FKKGLGAVSYRIRNRGAAGMKKRIQTLK 859 (1326)
Q Consensus 804 -----------~~~~ekpykC~~C~ksF~~ks~L~~H~r-~H~gekpy~C~~Cgk~Fs~~~~L~kH~k 859 (1326)
.+...-++.|.+|++.-.-..+|+.||. .|+...|.-|-.|+-.+.....+..|.+
T Consensus 572 ~ag~~~~ags~~pktkP~~~C~vc~yetniarnlrihmtss~~s~~p~~~Lq~~it~~l~~~~~~~~~ 639 (1406)
T KOG1146|consen 572 EAGLGPSAGSSGPKTKPSWRCEVCSYETNIARNLRIHMTASPSSSPPSLVLQQNITSSLASLLGGQGR 639 (1406)
T ss_pred cccCCCCCCCCCCCCCCCcchhhhcchhhhhhccccccccCCCCCChHHHhhhcchhhccccccCcCC
Confidence 0111346899999999999999999995 4555555777777777766666666665
No 60
>smart00355 ZnF_C2H2 zinc finger.
Probab=91.29 E-value=0.14 Score=36.37 Aligned_cols=21 Identities=29% Similarity=0.650 Sum_probs=10.8
Q ss_pred ccCccccccCChhHHHhHhhh
Q 000729 675 ACAICLDSFTNKKVLESHVQE 695 (1326)
Q Consensus 675 ~C~~CgKsF~sks~L~~H~r~ 695 (1326)
.|..|++.|.....|..|++.
T Consensus 2 ~C~~C~~~f~~~~~l~~H~~~ 22 (26)
T smart00355 2 RCPECGKVFKSKSALKEHMRT 22 (26)
T ss_pred CCCCCcchhCCHHHHHHHHHH
Confidence 455555555555555555543
No 61
>smart00355 ZnF_C2H2 zinc finger.
Probab=91.22 E-value=0.14 Score=36.39 Aligned_cols=24 Identities=29% Similarity=0.544 Sum_probs=15.0
Q ss_pred eeecccCCccCChhHHHHHHHhhcc
Q 000729 777 FICRFCGLKFDLLPDLGRHHQAAHM 801 (1326)
Q Consensus 777 fkC~~CgKsF~sks~L~rHH~r~Ht 801 (1326)
|+|+.|++.|.....|.. |++.|.
T Consensus 1 ~~C~~C~~~f~~~~~l~~-H~~~H~ 24 (26)
T smart00355 1 YRCPECGKVFKSKSALKE-HMRTHX 24 (26)
T ss_pred CCCCCCcchhCCHHHHHH-HHHHhc
Confidence 456666666666666666 454554
No 62
>COG5048 FOG: Zn-finger [General function prediction only]
Probab=90.91 E-value=0.17 Score=60.18 Aligned_cols=159 Identities=17% Similarity=0.216 Sum_probs=89.3
Q ss_pred CcccCCCCCcccCChhhHhhhhhh--ccCccccccCCccccC--ccccccCChhHHHhHhhhccccccccccccccccC-
Q 000729 638 KTHKCKICSQVFLHDQELGVHWMD--NHKKEAQWLFRGYACA--ICLDSFTNKKVLESHVQERHHVQFVEQCMLQQCIP- 712 (1326)
Q Consensus 638 kpfkC~~CgK~F~~~s~L~~H~~~--~Ht~e~~~~~kpy~C~--~CgKsF~sks~L~~H~r~Hh~e~~~~~~kpfkC~~- 712 (1326)
.++.|..|...|.....|.+| .. .|.++. .+++.|+ .|++.|.....+..|...|.+.. ++.|..
T Consensus 288 ~~~~~~~~~~~~s~~~~l~~~-~~~~~h~~~~---~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~ 357 (467)
T COG5048 288 LPIKSKQCNISFSRSSPLTRH-LRSVNHSGES---LKPFSCPYSLCGKLFSRNDALKRHILLHTSIS------PAKEKLL 357 (467)
T ss_pred cCCCCccccCCcccccccccc-cccccccccc---CCceeeeccCCCccccccccccCCcccccCCC------ccccccc
Confidence 567777777777777777777 44 566651 1567777 57777777777777777666652 223332
Q ss_pred -CCCccCChhHHhhhhhhcccCcccchhhhhhcccccCCCCCccccCCCchhhhhhhhhcCCcceeee--cccCCccCCh
Q 000729 713 -CGSHFGNTEELWLHVQSVHAIDFKMSEVAQQHNQSVGEDSPKKLELGYSASVENHSENLGSIRKFIC--RFCGLKFDLL 789 (1326)
Q Consensus 713 -Cgk~F~sks~L~~Hv~r~H~~ef~C~~C~k~f~~~~~ekp~~C~~Cgk~~sL~~Hlr~HtgeKpfkC--~~CgKsF~sk 789 (1326)
|.+.+.....-..+ .. ..+.......+.+.| ..|-..+.+.
T Consensus 358 ~~~~~~~~~~~~~~~-~~-----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (467)
T COG5048 358 NSSSKFSPLLNNEPP-QS-----------------------------------LQQYKDLKNDKKSETLSNSCIRNFKRD 401 (467)
T ss_pred cCccccccccCCCCc-cc-----------------------------------hhhccCccCCccccccccchhhhhccc
Confidence 32332222211111 00 000111112233444 2255666666
Q ss_pred hHHHHHHHhhccCCCCCCCCCcccCcCCcccCCchhhhcccccccCCCcccCCCCCc
Q 000729 790 PDLGRHHQAAHMGPNLVNSRPHKKGIRFYAYKLKSGRLSRPRFKKGLGAVSYRIRNR 846 (1326)
Q Consensus 790 s~L~rHH~r~Htg~~~~~ekpykC~~C~ksF~~ks~L~~H~r~H~gekpy~C~~Cgk 846 (1326)
..+.. |...|.... ...+.+..|.+.|.....+..|++.|....++-|..++.
T Consensus 402 ~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (467)
T COG5048 402 SNLSL-HIITHLSFR---PYNCKNPPCSKSFNRHYNLIPHKKIHTNHAPLLCSILKS 454 (467)
T ss_pred ccccc-ccccccccC---CcCCCCCcchhhccCcccccccccccccCCceeeccccc
Confidence 66666 555565511 235667778888888888888888887777766655544
No 63
>PRK04860 hypothetical protein; Provisional
Probab=90.90 E-value=0.082 Score=56.18 Aligned_cols=39 Identities=10% Similarity=-0.119 Sum_probs=34.9
Q ss_pred CCcccCcCCcccCCchhhhcccccccCCCcccCCCCCccCCCh
Q 000729 809 RPHKKGIRFYAYKLKSGRLSRPRFKKGLGAVSYRIRNRGAAGM 851 (1326)
Q Consensus 809 kpykC~~C~ksF~~ks~L~~H~r~H~gekpy~C~~Cgk~Fs~~ 851 (1326)
-+|.|. |++ ....+++|.++|+++++|.|..|++.|...
T Consensus 118 ~~Y~C~-C~~---~~~~~rrH~ri~~g~~~YrC~~C~~~l~~~ 156 (160)
T PRK04860 118 FPYRCK-CQE---HQLTVRRHNRVVRGEAVYRCRRCGETLVFK 156 (160)
T ss_pred EEEEcC-CCC---eeCHHHHHHHHhcCCccEECCCCCceeEEe
Confidence 479998 998 888899999999999999999999988643
No 64
>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.
Probab=89.96 E-value=0.18 Score=43.03 Aligned_cols=28 Identities=25% Similarity=0.500 Sum_probs=15.0
Q ss_pred CccccCccccccCChhHHHhHhhhcccc
Q 000729 672 RGYACAICLDSFTNKKVLESHVQERHHV 699 (1326)
Q Consensus 672 kpy~C~~CgKsF~sks~L~~H~r~Hh~e 699 (1326)
.|-.|++|+..+.+..+|++|+..+|+.
T Consensus 23 ~PatCP~C~a~~~~srnLrRHle~~H~~ 50 (54)
T PF09237_consen 23 QPATCPICGAVIRQSRNLRRHLEIRHFK 50 (54)
T ss_dssp --EE-TTT--EESSHHHHHHHHHHHTTT
T ss_pred CCCCCCcchhhccchhhHHHHHHHHhcc
Confidence 5566666666666666666666666654
No 65
>cd01395 HMT_MBD Methyl-CpG binding domains (MBD) present in putative histone methyltransferases (HMT) such as CLLD8 and SETDB1 proteins; CLLD8 contains a MBD, a PreSET and a bifurcated SET domain, suggesting that CLLD8 might be associated with methylation-mediated transcriptional repression. SETDB1 and other proteins in this group have a similar domain architecture. SETDB1 is a novel KAP-1-associated histone H3, lysine 9-specific methyltransferase that contributes to HP1-mediated silencing of euchromatic genes by KRAB zinc-finger proteins.
Probab=88.06 E-value=0.12 Score=46.01 Aligned_cols=26 Identities=8% Similarity=-0.022 Sum_probs=22.3
Q ss_pred CccccccCCCcCCc-cccccceeeecC
Q 000729 986 GIRSSDSSDFVNNQ-WEVDECHCIIDS 1011 (1326)
Q Consensus 986 ~~~~v~~~~p~~~~-w~~~e~~~~~~~ 1011 (1326)
.++.|+|.+|||.. ++|+|+|.||..
T Consensus 22 ~k~~V~Y~aPCGr~Lr~~~EV~~YL~~ 48 (60)
T cd01395 22 VKKHVIYKAPCGRSLRNMSEVHRYLRE 48 (60)
T ss_pred cccceEEECCcchhhhcHHHHHHHHHh
Confidence 56779999999999 999999987654
No 66
>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A.
Probab=88.00 E-value=0.21 Score=36.00 Aligned_cols=21 Identities=33% Similarity=0.773 Sum_probs=10.8
Q ss_pred ccCccccccCChhHHHhHhhh
Q 000729 675 ACAICLDSFTNKKVLESHVQE 695 (1326)
Q Consensus 675 ~C~~CgKsF~sks~L~~H~r~ 695 (1326)
.|.+|++.|.+...|+.|++.
T Consensus 2 ~C~~C~~~f~s~~~~~~H~~s 22 (25)
T PF12874_consen 2 YCDICNKSFSSENSLRQHLRS 22 (25)
T ss_dssp EETTTTEEESSHHHHHHHHTT
T ss_pred CCCCCCCCcCCHHHHHHHHCc
Confidence 455555555555555555543
No 67
>PF11722 zf-TRM13_CCCH: CCCH zinc finger in TRM13 protein; InterPro: IPR021721 This domain is found at the N terminus of TRM13 methyltransferase proteins. It is presumed to be a zinc binding domain. ; GO: 0008168 methyltransferase activity
Probab=86.75 E-value=0.2 Score=38.74 Aligned_cols=29 Identities=28% Similarity=0.619 Sum_probs=27.0
Q ss_pred ccchhhhhhcCcceeeeecCCceEEEEee
Q 000729 325 RQCTAFIESKGRQCVRWANEGDVYCCVHL 353 (1326)
Q Consensus 325 ~~c~a~~~~k~r~c~r~a~~~~~yc~~h~ 353 (1326)
-+|.-||+.|.|.|.=.+..|..||--|+
T Consensus 2 ~~C~f~l~~K~R~C~m~~~~g~~fC~~H~ 30 (31)
T PF11722_consen 2 GRCEFFLPRKKRFCKMTRKPGSRFCGEHM 30 (31)
T ss_pred CcceEECCccccccCCeecCcCCccccCC
Confidence 37999999999999999999999999885
No 68
>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A.
Probab=86.36 E-value=0.19 Score=36.11 Aligned_cols=17 Identities=24% Similarity=0.626 Sum_probs=7.0
Q ss_pred eeecccCCccCChhHHHH
Q 000729 777 FICRFCGLKFDLLPDLGR 794 (1326)
Q Consensus 777 fkC~~CgKsF~sks~L~r 794 (1326)
|+|+.|+.... ...|.+
T Consensus 1 y~C~~C~y~t~-~~~l~~ 17 (24)
T PF13909_consen 1 YKCPHCSYSTS-KSNLKR 17 (24)
T ss_dssp EE-SSSS-EES-HHHHHH
T ss_pred CCCCCCCCcCC-HHHHHH
Confidence 34444444444 444444
No 69
>smart00570 AWS associated with SET domains. subdomain of PRESET
Probab=85.74 E-value=0.31 Score=41.98 Aligned_cols=24 Identities=33% Similarity=0.830 Sum_probs=21.5
Q ss_pred ceEEecCCCCCCCCCCCCcccccC
Q 000729 1145 YLIYECNHMCSCDRTCPNRVLQNG 1168 (1326)
Q Consensus 1145 ~~i~EC~~~C~C~~~C~NRv~Q~g 1168 (1326)
.+.+||++.|.|+..|.||.+|+.
T Consensus 26 ~l~~EC~~~C~~G~~C~NqrFqk~ 49 (51)
T smart00570 26 MLLIECSSDCPCGSYCSNQRFQKR 49 (51)
T ss_pred HHhhhcCCCCCCCcCccCcccccC
Confidence 357899999999999999999975
No 70
>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A.
Probab=84.43 E-value=0.54 Score=33.73 Aligned_cols=21 Identities=29% Similarity=0.536 Sum_probs=8.7
Q ss_pred ccCccccccCChhHHHhHhhhc
Q 000729 675 ACAICLDSFTNKKVLESHVQER 696 (1326)
Q Consensus 675 ~C~~CgKsF~sks~L~~H~r~H 696 (1326)
+|+.|+.... +..|.+|++.|
T Consensus 2 ~C~~C~y~t~-~~~l~~H~~~~ 22 (24)
T PF13909_consen 2 KCPHCSYSTS-KSNLKRHLKRH 22 (24)
T ss_dssp E-SSSS-EES-HHHHHHHHHHH
T ss_pred CCCCCCCcCC-HHHHHHHHHhh
Confidence 4444444444 44444444443
No 71
>COG5048 FOG: Zn-finger [General function prediction only]
Probab=84.34 E-value=0.47 Score=56.51 Aligned_cols=59 Identities=24% Similarity=0.513 Sum_probs=46.8
Q ss_pred cCCCcccCCCCCcccCChhhHhhhhhhccCccccccCCccccCc--cccccCChhHHHhHhhhcccc
Q 000729 635 EDEKTHKCKICSQVFLHDQELGVHWMDNHKKEAQWLFRGYACAI--CLDSFTNKKVLESHVQERHHV 699 (1326)
Q Consensus 635 ~~ekpfkC~~CgK~F~~~s~L~~H~~~~Ht~e~~~~~kpy~C~~--CgKsF~sks~L~~H~r~Hh~e 699 (1326)
...+.+.|+.|...|........| ...|.++ +++.|.. |...|.....+.+|.+.|+..
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (467)
T COG5048 29 NAPRPDSCPNCTDSFSRLEHLTRH-IRSHTGE-----KPSQCSYSGCDKSFSRPLELSRHLRTHHNN 89 (467)
T ss_pred cCCchhhcccccccccccchhhhh-ccccccc-----CCccccccccccccCCcchhhhhccccccc
Confidence 345678888888889888888888 8888888 8888866 667788888888888776654
No 72
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=84.26 E-value=0.97 Score=52.25 Aligned_cols=140 Identities=21% Similarity=0.305 Sum_probs=78.7
Q ss_pred cccCCC--CCcccCChhhHhhhhhhccCccccccCCccccCccc---cccC------ChhHHHhHhhhcccccccccccc
Q 000729 639 THKCKI--CSQVFLHDQELGVHWMDNHKKEAQWLFRGYACAICL---DSFT------NKKVLESHVQERHHVQFVEQCML 707 (1326)
Q Consensus 639 pfkC~~--CgK~F~~~s~L~~H~~~~Ht~e~~~~~kpy~C~~Cg---KsF~------sks~L~~H~r~Hh~e~~~~~~kp 707 (1326)
.|.||. |.........|+.|.+..|.. +-|.+|- +.|. ++..|..|...-..+.-+. ..
T Consensus 151 ~F~CP~skc~~~C~~~k~lk~H~K~~H~~--------~~C~~C~~nKk~F~~E~~lF~~~~Lr~H~~~G~~e~GFK--GH 220 (493)
T COG5236 151 SFKCPKSKCHRRCGSLKELKKHYKAQHGF--------VLCSECIGNKKDFWNEIRLFRSSTLRDHKNGGLEEEGFK--GH 220 (493)
T ss_pred HhcCCchhhhhhhhhHHHHHHHHHhhcCc--------EEhHhhhcCcccCccceeeeecccccccccCCccccCcC--CC
Confidence 488885 777777788899996666643 5677774 3344 3445666643211111111 12
Q ss_pred ccccCCCCccCChhHHhhhhhhcccCcccchhhhhhcccccCCCCCccccCCCchhhhhhhhhcCCcceeeecc--cC--
Q 000729 708 QQCIPCGSHFGNTEELWLHVQSVHAIDFKMSEVAQQHNQSVGEDSPKKLELGYSASVENHSENLGSIRKFICRF--CG-- 783 (1326)
Q Consensus 708 fkC~~Cgk~F~sks~L~~Hv~r~H~~ef~C~~C~k~f~~~~~ekp~~C~~Cgk~~sL~~Hlr~HtgeKpfkC~~--Cg-- 783 (1326)
=.|..|...|-.-..|..|++..|. .|-.|.+.-...+ ..+..-..|..|.+. --|.|.+ |-
T Consensus 221 P~C~FC~~~FYdDDEL~~HcR~~HE---~ChICD~v~p~~~-------QYFK~Y~~Le~HF~~----~hy~ct~qtc~~~ 286 (493)
T COG5236 221 PLCIFCKIYFYDDDELRRHCRLRHE---ACHICDMVGPIRY-------QYFKSYEDLEAHFRN----AHYCCTFQTCRVG 286 (493)
T ss_pred chhhhccceecChHHHHHHHHhhhh---hhhhhhccCccch-------hhhhCHHHHHHHhhc----CceEEEEEEEecC
Confidence 2599999999999999999887775 2323322210000 001111134455432 2355532 32
Q ss_pred --CccCChhHHHHHHHhhccC
Q 000729 784 --LKFDLLPDLGRHHQAAHMG 802 (1326)
Q Consensus 784 --KsF~sks~L~rHH~r~Htg 802 (1326)
..|...-.|..|..+.|..
T Consensus 287 k~~vf~~~~el~~h~~~~h~~ 307 (493)
T COG5236 287 KCYVFPYHTELLEHLTRFHKV 307 (493)
T ss_pred cEEEeccHHHHHHHHHHHhhc
Confidence 3577777788877777765
No 73
>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.
Probab=83.57 E-value=0.65 Score=34.42 Aligned_cols=22 Identities=0% Similarity=-0.277 Sum_probs=14.6
Q ss_pred cccCcCCcccCCchhhhccccc
Q 000729 811 HKKGIRFYAYKLKSGRLSRPRF 832 (1326)
Q Consensus 811 ykC~~C~ksF~~ks~L~~H~r~ 832 (1326)
|.|..|++.|.+...|..|++.
T Consensus 2 ~~C~~C~k~f~~~~~~~~H~~s 23 (27)
T PF12171_consen 2 FYCDACDKYFSSENQLKQHMKS 23 (27)
T ss_dssp CBBTTTTBBBSSHHHHHCCTTS
T ss_pred CCcccCCCCcCCHHHHHHHHcc
Confidence 5666677777777666666654
No 74
>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A.
Probab=83.50 E-value=0.72 Score=33.23 Aligned_cols=18 Identities=28% Similarity=0.650 Sum_probs=10.0
Q ss_pred eeecccCCccCChhHHHH
Q 000729 777 FICRFCGLKFDLLPDLGR 794 (1326)
Q Consensus 777 fkC~~CgKsF~sks~L~r 794 (1326)
|.|+.|++.|.+...|..
T Consensus 1 ~~C~~C~~~f~s~~~~~~ 18 (25)
T PF12874_consen 1 FYCDICNKSFSSENSLRQ 18 (25)
T ss_dssp EEETTTTEEESSHHHHHH
T ss_pred CCCCCCCCCcCCHHHHHH
Confidence 445555555555555555
No 75
>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.
Probab=82.74 E-value=0.65 Score=34.43 Aligned_cols=22 Identities=23% Similarity=0.667 Sum_probs=12.4
Q ss_pred cccCccccccCChhHHHhHhhh
Q 000729 674 YACAICLDSFTNKKVLESHVQE 695 (1326)
Q Consensus 674 y~C~~CgKsF~sks~L~~H~r~ 695 (1326)
|.|..|++.|.+...|..|++.
T Consensus 2 ~~C~~C~k~f~~~~~~~~H~~s 23 (27)
T PF12171_consen 2 FYCDACDKYFSSENQLKQHMKS 23 (27)
T ss_dssp CBBTTTTBBBSSHHHHHCCTTS
T ss_pred CCcccCCCCcCCHHHHHHHHcc
Confidence 4455555555555555555543
No 76
>KOG2785 consensus C2H2-type Zn-finger protein [General function prediction only]
Probab=82.06 E-value=2 Score=50.81 Aligned_cols=27 Identities=26% Similarity=0.311 Sum_probs=20.0
Q ss_pred ceeeecccCCccCChhHHHHHHHhhccC
Q 000729 775 RKFICRFCGLKFDLLPDLGRHHQAAHMG 802 (1326)
Q Consensus 775 KpfkC~~CgKsF~sks~L~rHH~r~Htg 802 (1326)
-|-.|-+|++.|.+...-.. ||..|+|
T Consensus 165 ~Pt~CLfC~~~~k~~e~~~~-HM~~~Hg 191 (390)
T KOG2785|consen 165 IPTDCLFCDKKSKSLEENLK-HMFKEHG 191 (390)
T ss_pred CCcceeecCCCcccHHHHHH-HHhhccC
Confidence 35678888888888888878 5666665
No 77
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=81.71 E-value=0.75 Score=53.09 Aligned_cols=130 Identities=19% Similarity=0.239 Sum_probs=71.4
Q ss_pred ccccCc--cccccCChhHHHhHhhhccccccccccccccccCCC---CccCChhHHhhhhhhcccCcccchhhhhhcccc
Q 000729 673 GYACAI--CLDSFTNKKVLESHVQERHHVQFVEQCMLQQCIPCG---SHFGNTEELWLHVQSVHAIDFKMSEVAQQHNQS 747 (1326)
Q Consensus 673 py~C~~--CgKsF~sks~L~~H~r~Hh~e~~~~~~kpfkC~~Cg---k~F~sks~L~~Hv~r~H~~ef~C~~C~k~f~~~ 747 (1326)
.|.|+. |.........|+.|.+..|+. +.|.+|- +.|...-.|-.
T Consensus 151 ~F~CP~skc~~~C~~~k~lk~H~K~~H~~--------~~C~~C~~nKk~F~~E~~lF~---------------------- 200 (493)
T COG5236 151 SFKCPKSKCHRRCGSLKELKKHYKAQHGF--------VLCSECIGNKKDFWNEIRLFR---------------------- 200 (493)
T ss_pred HhcCCchhhhhhhhhHHHHHHHHHhhcCc--------EEhHhhhcCcccCccceeeee----------------------
Confidence 477865 776666678899999887775 4587774 23332211110
Q ss_pred cCCCCCccccCCCchhhhhhhhhcCCcce----eeecccCCccCChhHHHHHHHhhccCCCCCCCCCcccCcCCcc----
Q 000729 748 VGEDSPKKLELGYSASVENHSENLGSIRK----FICRFCGLKFDLLPDLGRHHQAAHMGPNLVNSRPHKKGIRFYA---- 819 (1326)
Q Consensus 748 ~~ekp~~C~~Cgk~~sL~~Hlr~HtgeKp----fkC~~CgKsF~sks~L~rHH~r~Htg~~~~~ekpykC~~C~ks---- 819 (1326)
+..|..|...-..+.- -.|.+|.+.|..-..|.+|.+..|. .|.+|++.
T Consensus 201 -------------~~~Lr~H~~~G~~e~GFKGHP~C~FC~~~FYdDDEL~~HcR~~HE----------~ChICD~v~p~~ 257 (493)
T COG5236 201 -------------SSTLRDHKNGGLEEEGFKGHPLCIFCKIYFYDDDELRRHCRLRHE----------ACHICDMVGPIR 257 (493)
T ss_pred -------------cccccccccCCccccCcCCCchhhhccceecChHHHHHHHHhhhh----------hhhhhhccCccc
Confidence 0123333322111111 2588888888888888885444443 35555543
Q ss_pred ---cCCchhhhcccccccCCCcccC--CCCC----ccCCChHHHHhhcc
Q 000729 820 ---YKLKSGRLSRPRFKKGLGAVSY--RIRN----RGAAGMKKRIQTLK 859 (1326)
Q Consensus 820 ---F~~ks~L~~H~r~H~gekpy~C--~~Cg----k~Fs~~~~L~kH~k 859 (1326)
|.....|..|.+.-+ |.| ..|- ..|.....|+.|+-
T Consensus 258 ~QYFK~Y~~Le~HF~~~h----y~ct~qtc~~~k~~vf~~~~el~~h~~ 302 (493)
T COG5236 258 YQYFKSYEDLEAHFRNAH----YCCTFQTCRVGKCYVFPYHTELLEHLT 302 (493)
T ss_pred hhhhhCHHHHHHHhhcCc----eEEEEEEEecCcEEEeccHHHHHHHHH
Confidence 666667777764322 333 1121 24556666666654
No 78
>KOG4173 consensus Alpha-SNAP protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.57 E-value=0.43 Score=51.60 Aligned_cols=87 Identities=24% Similarity=0.524 Sum_probs=68.7
Q ss_pred CCcccCCC--CCcccCChhhHhhhhhhccCccccccCCccccCccccccCChhHHHhHhhhcccccc----ccccccccc
Q 000729 637 EKTHKCKI--CSQVFLHDQELGVHWMDNHKKEAQWLFRGYACAICLDSFTNKKVLESHVQERHHVQF----VEQCMLQQC 710 (1326)
Q Consensus 637 ekpfkC~~--CgK~F~~~s~L~~H~~~~Ht~e~~~~~kpy~C~~CgKsF~sks~L~~H~r~Hh~e~~----~~~~kpfkC 710 (1326)
-..|.|++ |-+.|.....+..|.-..|+.. |..|.+.|.+...|..|+...|..-. ..+.-.|+|
T Consensus 77 ~~~~~cqvagc~~~~d~lD~~E~hY~~~h~~s---------Cs~C~r~~Pt~hLLd~HI~E~HDs~Fqa~veRG~dMy~C 147 (253)
T KOG4173|consen 77 VPAFACQVAGCCQVFDALDDYEHHYHTLHGNS---------CSFCKRAFPTGHLLDAHILEWHDSLFQALVERGQDMYQC 147 (253)
T ss_pred cccccccccchHHHHhhhhhHHHhhhhcccch---------hHHHHHhCCchhhhhHHHHHHHHHHHHHHHHcCccHHHH
Confidence 34588987 8889999998999965666654 99999999999999999976654211 011246889
Q ss_pred c--CCCCccCChhHHhhhhhhccc
Q 000729 711 I--PCGSHFGNTEELWLHVQSVHA 732 (1326)
Q Consensus 711 ~--~Cgk~F~sks~L~~Hv~r~H~ 732 (1326)
- .|+..|.+...-+.|+.+.|.
T Consensus 148 lvEgCt~KFkT~r~RkdH~I~~Hk 171 (253)
T KOG4173|consen 148 LVEGCTEKFKTSRDRKDHMIRMHK 171 (253)
T ss_pred HHHhhhhhhhhhhhhhhHHHHhcc
Confidence 5 599999999999999999995
No 79
>KOG4173 consensus Alpha-SNAP protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.36 E-value=0.72 Score=49.97 Aligned_cols=91 Identities=22% Similarity=0.304 Sum_probs=68.7
Q ss_pred CccccCc--cccccCChhHHHhHhhhccccccccccccccccCCCCccCChhHHhhhhhhcccCcccchhhhhhcccccC
Q 000729 672 RGYACAI--CLDSFTNKKVLESHVQERHHVQFVEQCMLQQCIPCGSHFGNTEELWLHVQSVHAIDFKMSEVAQQHNQSVG 749 (1326)
Q Consensus 672 kpy~C~~--CgKsF~sks~L~~H~r~Hh~e~~~~~~kpfkC~~Cgk~F~sks~L~~Hv~r~H~~ef~C~~C~k~f~~~~~ 749 (1326)
+.|.|.+ |...|........|..+.|+. .|..|.+.|.+..-|..|+...|..
T Consensus 78 ~~~~cqvagc~~~~d~lD~~E~hY~~~h~~---------sCs~C~r~~Pt~hLLd~HI~E~HDs---------------- 132 (253)
T KOG4173|consen 78 PAFACQVAGCCQVFDALDDYEHHYHTLHGN---------SCSFCKRAFPTGHLLDAHILEWHDS---------------- 132 (253)
T ss_pred ccccccccchHHHHhhhhhHHHhhhhcccc---------hhHHHHHhCCchhhhhHHHHHHHHH----------------
Confidence 4588987 888899888888887766665 3999999999999999998878851
Q ss_pred CCCCccccCCCchhhhhhhhhcCCcceeee--cccCCccCChhHHHHHHHhhccC
Q 000729 750 EDSPKKLELGYSASVENHSENLGSIRKFIC--RFCGLKFDLLPDLGRHHQAAHMG 802 (1326)
Q Consensus 750 ekp~~C~~Cgk~~sL~~Hlr~HtgeKpfkC--~~CgKsF~sks~L~rHH~r~Htg 802 (1326)
|-+ ..+-.|.--|+| ..|+..|.+...-+.|..++|.=
T Consensus 133 --------------~Fq-a~veRG~dMy~ClvEgCt~KFkT~r~RkdH~I~~Hk~ 172 (253)
T KOG4173|consen 133 --------------LFQ-ALVERGQDMYQCLVEGCTEKFKTSRDRKDHMIRMHKY 172 (253)
T ss_pred --------------HHH-HHHHcCccHHHHHHHhhhhhhhhhhhhhhHHHHhccC
Confidence 000 112234455788 56889999888888888888865
No 80
>KOG2084 consensus Predicted histone tail methylase containing SET domain [Chromatin structure and dynamics]
Probab=79.03 E-value=2.3 Score=52.22 Aligned_cols=53 Identities=38% Similarity=0.729 Sum_probs=38.0
Q ss_pred cccCCCCCCceEEEEEEecccCceeEEEEEEccCCCCCC-eEEEecCCCCCCC----------CCceeecCC
Q 000729 1258 FINHSCFPNLVNHQVLVESMDYQRAHIGLYASRDIAVGE-ELTYDYHYELLSG----------EGYPCHCGA 1318 (1326)
Q Consensus 1258 FINHSC~PN~~~~~V~v~~~d~~~~~I~~fA~RdI~~GE-ELT~DYg~~~~~~----------~~~~C~CGs 1318 (1326)
++||||.||+.+ ..+ .....+.+..++.+++ ||++.|....++. ..|.|.|+.
T Consensus 208 ~~~hsC~pn~~~---~~~-----~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~~r~~~l~~~~~f~c~c~r 271 (482)
T KOG2084|consen 208 LFNHSCFPNISV---IFD-----GRGLALLVPAGIDAGEEELTISYTDPLLSTASRQKQLRQSKLFSCQCPR 271 (482)
T ss_pred hcccCCCCCeEE---EEC-----CceeEEEeecccCCCCCEEEEeecccccCHHHHHHHHhhccceeeecCC
Confidence 779999999982 222 2346677888888877 9999998876542 136777764
No 81
>KOG2482 consensus Predicted C2H2-type Zn-finger protein [Transcription]
Probab=74.98 E-value=4.5 Score=47.12 Aligned_cols=25 Identities=24% Similarity=0.381 Sum_probs=22.0
Q ss_pred eeecccCCccCChhHHHHHHHhhcc
Q 000729 777 FICRFCGLKFDLLPDLGRHHQAAHM 801 (1326)
Q Consensus 777 fkC~~CgKsF~sks~L~rHH~r~Ht 801 (1326)
-+|-.|.....+...|..|...+|.
T Consensus 280 v~CLfC~~~~en~~~l~eHmk~vHe 304 (423)
T KOG2482|consen 280 VVCLFCTNFYENPVFLFEHMKIVHE 304 (423)
T ss_pred eEEEeeccchhhHHHHHHHHHHHHH
Confidence 5899999999999999998777785
No 82
>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]
Probab=69.27 E-value=1.9 Score=37.47 Aligned_cols=35 Identities=20% Similarity=0.318 Sum_probs=29.0
Q ss_pred cccccCCCcccCCCCCcccCChhhHhhhhhhccCc
Q 000729 631 AGRSEDEKTHKCKICSQVFLHDQELGVHWMDNHKK 665 (1326)
Q Consensus 631 ~~~h~~ekpfkC~~CgK~F~~~s~L~~H~~~~Ht~ 665 (1326)
.....||..++||-|+..|.....+.+|+...|.-
T Consensus 9 v~~RDGE~~lrCPRC~~~FR~~K~Y~RHVNKaH~~ 43 (65)
T COG4049 9 VRDRDGEEFLRCPRCGMVFRRRKDYIRHVNKAHGW 43 (65)
T ss_pred eeccCCceeeeCCchhHHHHHhHHHHHHhhHHhhh
Confidence 35567888999999999999999999997777753
No 83
>KOG2893 consensus Zn finger protein [General function prediction only]
Probab=67.68 E-value=2 Score=47.56 Aligned_cols=48 Identities=25% Similarity=0.462 Sum_probs=40.3
Q ss_pred ccCccccccCChhHHHhHhhhccccccccccccccccCCCCccCChhHHhhhhhhccc
Q 000729 675 ACAICLDSFTNKKVLESHVQERHHVQFVEQCMLQQCIPCGSHFGNTEELWLHVQSVHA 732 (1326)
Q Consensus 675 ~C~~CgKsF~sks~L~~H~r~Hh~e~~~~~~kpfkC~~Cgk~F~sks~L~~Hv~r~H~ 732 (1326)
.|-.|++.|.....|.+|++.. .|+|.+|.|..-+--.|..|-+.+|.
T Consensus 12 wcwycnrefddekiliqhqkak----------hfkchichkkl~sgpglsihcmqvhk 59 (341)
T KOG2893|consen 12 WCWYCNREFDDEKILIQHQKAK----------HFKCHICHKKLFSGPGLSIHCMQVHK 59 (341)
T ss_pred eeeecccccchhhhhhhhhhhc----------cceeeeehhhhccCCCceeehhhhhh
Confidence 3899999999999999998754 46799999988888889989777774
No 84
>smart00451 ZnF_U1 U1-like zinc finger. Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.
Probab=64.75 E-value=3.7 Score=31.90 Aligned_cols=26 Identities=31% Similarity=0.828 Sum_probs=17.9
Q ss_pred ccccCccccccCChhHHHhHhhhccc
Q 000729 673 GYACAICLDSFTNKKVLESHVQERHH 698 (1326)
Q Consensus 673 py~C~~CgKsF~sks~L~~H~r~Hh~ 698 (1326)
+|.|.+|++.|.+...+..|++...+
T Consensus 3 ~~~C~~C~~~~~~~~~~~~H~~gk~H 28 (35)
T smart00451 3 GFYCKLCNVTFTDEISVEAHLKGKKH 28 (35)
T ss_pred CeEccccCCccCCHHHHHHHHChHHH
Confidence 46677777777777777777765433
No 85
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=63.91 E-value=4.9 Score=29.59 Aligned_cols=18 Identities=44% Similarity=0.805 Sum_probs=8.9
Q ss_pred ccCccccccCChhHHHhHh
Q 000729 675 ACAICLDSFTNKKVLESHV 693 (1326)
Q Consensus 675 ~C~~CgKsF~sks~L~~H~ 693 (1326)
.|+.||+.| ....|.+|+
T Consensus 4 ~C~~CgR~F-~~~~l~~H~ 21 (25)
T PF13913_consen 4 PCPICGRKF-NPDRLEKHE 21 (25)
T ss_pred cCCCCCCEE-CHHHHHHHH
Confidence 355555555 344455554
No 86
>KOG2785 consensus C2H2-type Zn-finger protein [General function prediction only]
Probab=59.63 E-value=16 Score=43.58 Aligned_cols=60 Identities=25% Similarity=0.447 Sum_probs=42.7
Q ss_pred cccCCCCCcccCChhhHhhhhhh-ccCc-----------------------------cc-cccCCccccCccccccCChh
Q 000729 639 THKCKICSQVFLHDQELGVHWMD-NHKK-----------------------------EA-QWLFRGYACAICLDSFTNKK 687 (1326)
Q Consensus 639 pfkC~~CgK~F~~~s~L~~H~~~-~Ht~-----------------------------e~-~~~~kpy~C~~CgKsF~sks 687 (1326)
.|+|.-|...|.+...-+.|++. .|.- +. ....-++.|..|.|.|.+..
T Consensus 3 ~ftC~tC~v~F~~ad~Qr~HyKSdWHRYNLKRkVA~lPPItaE~F~~k~~s~~~~~~~~~e~~~~~~~c~~c~k~~~s~~ 82 (390)
T KOG2785|consen 3 GFTCNTCNVEFDDADEQRAHYKSDWHRYNLKRKVASLPPITAEEFNEKVLSDDSEKEENLEEAESVVYCEACNKSFASPK 82 (390)
T ss_pred cceeeceeeeeccHHHHHHHhhhhHHHhhHHhHhhcCCCcCHHHHhHHHhhhhhhhhhhhhhcccceehHHhhccccChh
Confidence 48999999999999888888532 2310 00 00135688999999999999
Q ss_pred HHHhHhhhccc
Q 000729 688 VLESHVQERHH 698 (1326)
Q Consensus 688 ~L~~H~r~Hh~ 698 (1326)
....|+....+
T Consensus 83 a~~~hl~Sk~h 93 (390)
T KOG2785|consen 83 AHENHLKSKKH 93 (390)
T ss_pred hHHHHHHHhhc
Confidence 99999875443
No 87
>KOG2482 consensus Predicted C2H2-type Zn-finger protein [Transcription]
Probab=58.93 E-value=8 Score=45.22 Aligned_cols=20 Identities=10% Similarity=-0.064 Sum_probs=14.0
Q ss_pred ccCcCCcccCCchhhhcccc
Q 000729 812 KKGIRFYAYKLKSGRLSRPR 831 (1326)
Q Consensus 812 kC~~C~ksF~~ks~L~~H~r 831 (1326)
.|-.|.-.|.....|..||.
T Consensus 336 ~c~~cd~~F~~e~~l~~hm~ 355 (423)
T KOG2482|consen 336 RCAECDLSFWKEPGLLIHMV 355 (423)
T ss_pred ccccccccccCcchhhhhcc
Confidence 45556677777777777774
No 88
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=58.51 E-value=6.8 Score=28.84 Aligned_cols=17 Identities=35% Similarity=0.682 Sum_probs=12.8
Q ss_pred eeecccCCccCChhHHHH
Q 000729 777 FICRFCGLKFDLLPDLGR 794 (1326)
Q Consensus 777 fkC~~CgKsF~sks~L~r 794 (1326)
..|+.||+.| ....|.+
T Consensus 3 ~~C~~CgR~F-~~~~l~~ 19 (25)
T PF13913_consen 3 VPCPICGRKF-NPDRLEK 19 (25)
T ss_pred CcCCCCCCEE-CHHHHHH
Confidence 3688888888 6667777
No 89
>KOG2893 consensus Zn finger protein [General function prediction only]
Probab=58.29 E-value=3.6 Score=45.58 Aligned_cols=27 Identities=30% Similarity=0.469 Sum_probs=17.3
Q ss_pred eeeecccCCccCChhHHHHHHHhhccC
Q 000729 776 KFICRFCGLKFDLLPDLGRHHQAAHMG 802 (1326)
Q Consensus 776 pfkC~~CgKsF~sks~L~rHH~r~Htg 802 (1326)
-|+|.+|.|...+-..|..|-+.+|..
T Consensus 34 hfkchichkkl~sgpglsihcmqvhke 60 (341)
T KOG2893|consen 34 HFKCHICHKKLFSGPGLSIHCMQVHKE 60 (341)
T ss_pred cceeeeehhhhccCCCceeehhhhhhh
Confidence 366777766666666666666666654
No 90
>KOG1337 consensus N-methyltransferase [General function prediction only]
Probab=57.08 E-value=7.7 Score=48.41 Aligned_cols=41 Identities=29% Similarity=0.369 Sum_probs=31.2
Q ss_pred cccCCCCCCceEEEEEEecccCceeEEEEEEccCCCCCCeEEEecCCC
Q 000729 1258 FINHSCFPNLVNHQVLVESMDYQRAHIGLYASRDIAVGEELTYDYHYE 1305 (1326)
Q Consensus 1258 FINHSC~PN~~~~~V~v~~~d~~~~~I~~fA~RdI~~GEELT~DYg~~ 1305 (1326)
+.||++.+. ...++..| ..+-+++.++|.+|||+++.||..
T Consensus 239 ~~NH~~~~~----~~~~~~~d---~~~~l~~~~~v~~geevfi~YG~~ 279 (472)
T KOG1337|consen 239 LLNHSPEVI----KAGYNQED---EAVELVAERDVSAGEEVFINYGPK 279 (472)
T ss_pred hhccCchhc----cccccCCC---CcEEEEEeeeecCCCeEEEecCCC
Confidence 579999992 22333322 378899999999999999999963
No 91
>smart00451 ZnF_U1 U1-like zinc finger. Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.
Probab=52.46 E-value=11 Score=29.32 Aligned_cols=19 Identities=21% Similarity=0.592 Sum_probs=13.7
Q ss_pred eeeecccCCccCChhHHHH
Q 000729 776 KFICRFCGLKFDLLPDLGR 794 (1326)
Q Consensus 776 pfkC~~CgKsF~sks~L~r 794 (1326)
+|.|+.|++.|.+...+..
T Consensus 3 ~~~C~~C~~~~~~~~~~~~ 21 (35)
T smart00451 3 GFYCKLCNVTFTDEISVEA 21 (35)
T ss_pred CeEccccCCccCCHHHHHH
Confidence 4667777777777777766
No 92
>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]
Probab=51.60 E-value=6.9 Score=34.20 Aligned_cols=33 Identities=27% Similarity=0.334 Sum_probs=27.1
Q ss_pred hcCCcceeeecccCCccCChhHHHHHHHhhccC
Q 000729 770 NLGSIRKFICRFCGLKFDLLPDLGRHHQAAHMG 802 (1326)
Q Consensus 770 ~HtgeKpfkC~~CgKsF~sks~L~rHH~r~Htg 802 (1326)
.-.||.-+.|+.||+.|....++.+|.-+.|.-
T Consensus 11 ~RDGE~~lrCPRC~~~FR~~K~Y~RHVNKaH~~ 43 (65)
T COG4049 11 DRDGEEFLRCPRCGMVFRRRKDYIRHVNKAHGW 43 (65)
T ss_pred ccCCceeeeCCchhHHHHHhHHHHHHhhHHhhh
Confidence 345777899999999999999999977777753
No 93
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=50.32 E-value=6.1 Score=50.53 Aligned_cols=55 Identities=11% Similarity=0.129 Sum_probs=25.6
Q ss_pred ccchhhhhhcccccCCCCC-----ccccCCCchhhhhhh---hhcCCcceee-ecccCCccCChh
Q 000729 735 FKMSEVAQQHNQSVGEDSP-----KKLELGYSASVENHS---ENLGSIRKFI-CRFCGLKFDLLP 790 (1326)
Q Consensus 735 f~C~~C~k~f~~~~~ekp~-----~C~~Cgk~~sL~~Hl---r~HtgeKpfk-C~~CgKsF~sks 790 (1326)
-.|+.|.+...... .+.| .|+.||-+|+..+-+ |.++.-+.|. |+.|.+.|...-
T Consensus 102 a~C~~Cl~Ei~dp~-~rrY~YPF~~CT~CGPRfTIi~alPYDR~nTsM~~F~lC~~C~~EY~dP~ 165 (750)
T COG0068 102 ATCEDCLEEIFDPN-SRRYLYPFINCTNCGPRFTIIEALPYDRENTSMADFPLCPFCDKEYKDPL 165 (750)
T ss_pred hhhHHHHHHhcCCC-CcceeccccccCCCCcceeeeccCCCCcccCccccCcCCHHHHHHhcCcc
Confidence 45666655555442 2222 256666555443333 2333334443 566655555543
No 94
>KOG3813 consensus Uncharacterized conserved protein (tumor-suppressor AXUD1 in humans) [General function prediction only]
Probab=46.20 E-value=9.6 Score=46.68 Aligned_cols=19 Identities=42% Similarity=1.027 Sum_probs=16.5
Q ss_pred CCCcccCCCCcCCCCCCccc
Q 000729 1091 QLGCACANSTCFPETCDHVY 1110 (1326)
Q Consensus 1091 ~~gC~C~~~~C~~~~C~C~~ 1110 (1326)
-+||+|. +.|+|++|.|.+
T Consensus 307 eCGCsCr-~~CdPETCaCSq 325 (640)
T KOG3813|consen 307 ECGCSCR-GVCDPETCACSQ 325 (640)
T ss_pred hhCCccc-ceeChhhcchhc
Confidence 4799999 699999999953
No 95
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=39.01 E-value=20 Score=28.12 Aligned_cols=9 Identities=0% Similarity=-0.104 Sum_probs=4.2
Q ss_pred CcccCCCCC
Q 000729 837 GAVSYRIRN 845 (1326)
Q Consensus 837 kpy~C~~Cg 845 (1326)
.+..|++|+
T Consensus 16 ~~~~CP~Cg 24 (33)
T cd00350 16 APWVCPVCG 24 (33)
T ss_pred CCCcCcCCC
Confidence 344455544
No 96
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=38.20 E-value=16 Score=29.18 Aligned_cols=15 Identities=20% Similarity=0.576 Sum_probs=8.3
Q ss_pred eeecccCCccCChhH
Q 000729 777 FICRFCGLKFDLLPD 791 (1326)
Q Consensus 777 fkC~~CgKsF~sks~ 791 (1326)
++|+.|+..|.-...
T Consensus 3 ~~CP~C~~~~~v~~~ 17 (38)
T TIGR02098 3 IQCPNCKTSFRVVDS 17 (38)
T ss_pred EECCCCCCEEEeCHH
Confidence 456666666654433
No 97
>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]
Probab=36.00 E-value=19 Score=32.16 Aligned_cols=33 Identities=21% Similarity=0.120 Sum_probs=19.4
Q ss_pred ceeeecccCCccCChhHHHHHHHhhccCCCCCCCCCcccCcCCc
Q 000729 775 RKFICRFCGLKFDLLPDLGRHHQAAHMGPNLVNSRPHKKGIRFY 818 (1326)
Q Consensus 775 KpfkC~~CgKsF~sks~L~rHH~r~Htg~~~~~ekpykC~~C~k 818 (1326)
-.|.|+.||..-..+..--+ .+ ..+|.|+.||.
T Consensus 26 v~F~CPnCGe~~I~Rc~~CR----k~-------g~~Y~Cp~CGF 58 (61)
T COG2888 26 VKFPCPNCGEVEIYRCAKCR----KL-------GNPYRCPKCGF 58 (61)
T ss_pred eEeeCCCCCceeeehhhhHH----Hc-------CCceECCCcCc
Confidence 35788888855444332211 22 35888888874
No 98
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=35.67 E-value=13 Score=41.65 Aligned_cols=49 Identities=20% Similarity=0.396 Sum_probs=24.7
Q ss_pred CccccCccccccCChhHHHhHhhhcccc-cc---ccccc-----cccccCCCCccCCh
Q 000729 672 RGYACAICLDSFTNKKVLESHVQERHHV-QF---VEQCM-----LQQCIPCGSHFGNT 720 (1326)
Q Consensus 672 kpy~C~~CgKsF~sks~L~~H~r~Hh~e-~~---~~~~k-----pfkC~~Cgk~F~sk 720 (1326)
+.+.|++|++.|.++.......+.-..+ .. +..-. ...|+.||..|...
T Consensus 4 k~~~CPvC~~~F~~~~vrs~~~r~~~~d~D~~~~Y~~vnP~~Y~V~vCP~CgyA~~~~ 61 (214)
T PF09986_consen 4 KKITCPVCGKEFKTKKVRSGKIRVIRRDSDFCPRYKGVNPLFYEVWVCPHCGYAAFEE 61 (214)
T ss_pred CceECCCCCCeeeeeEEEcCCceEeeecCCCccccCCCCCeeeeEEECCCCCCccccc
Confidence 4456666666666655444444321111 00 00001 23699999887654
No 99
>PF13891 zf-C3Hc3H: Potential DNA-binding domain
Probab=34.00 E-value=13 Score=33.65 Aligned_cols=24 Identities=38% Similarity=0.663 Sum_probs=20.9
Q ss_pred eecCCcccccccCCCcccccCCCC
Q 000729 379 TVLGTRCKHRALYGSSFCKKHRPR 402 (1326)
Q Consensus 379 ~~~~~~ck~~~~~~~~~c~~~~~~ 402 (1326)
+..|+.|+.+++||+.||-+|-..
T Consensus 3 ~~~~~~C~~~~lp~~~yC~~HIl~ 26 (65)
T PF13891_consen 3 TYSGRGCSQPALPGSKYCIRHILE 26 (65)
T ss_pred CCCCCCcCcccCchhhHHHHHhcc
Confidence 467899999999999999998743
No 100
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=33.41 E-value=22 Score=35.69 Aligned_cols=30 Identities=23% Similarity=0.222 Sum_probs=18.7
Q ss_pred eeecccCCccCChhHHHHHHHhhccCCCCCCCCCcccCcCCcccCCc
Q 000729 777 FICRFCGLKFDLLPDLGRHHQAAHMGPNLVNSRPHKKGIRFYAYKLK 823 (1326)
Q Consensus 777 fkC~~CgKsF~sks~L~rHH~r~Htg~~~~~ekpykC~~C~ksF~~k 823 (1326)
..|+.||+.|... . ..|-.|++||..|.-.
T Consensus 10 R~Cp~CG~kFYDL---n--------------k~PivCP~CG~~~~~~ 39 (108)
T PF09538_consen 10 RTCPSCGAKFYDL---N--------------KDPIVCPKCGTEFPPE 39 (108)
T ss_pred ccCCCCcchhccC---C--------------CCCccCCCCCCccCcc
Confidence 4677777777543 1 2466677777776655
No 101
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=33.12 E-value=49 Score=33.41 Aligned_cols=82 Identities=12% Similarity=-0.083 Sum_probs=37.9
Q ss_pred ceeeecccCCccCChhHHHHHHHhhccC-C------CCC--CCCCcccCcCCcccCCchhhhcccccccCCCcccCCCCC
Q 000729 775 RKFICRFCGLKFDLLPDLGRHHQAAHMG-P------NLV--NSRPHKKGIRFYAYKLKSGRLSRPRFKKGLGAVSYRIRN 845 (1326)
Q Consensus 775 KpfkC~~CgKsF~sks~L~rHH~r~Htg-~------~~~--~ekpykC~~C~ksF~~ks~L~~H~r~H~gekpy~C~~Cg 845 (1326)
-|-.|+.||..-.+..+|.| ..|.= + .+. ..+.-.|--|.+.|........ ..-.....|.|..|+
T Consensus 14 LP~~CpiCgLtLVss~HLAR---SyHHLfPl~~f~ev~~~~~~~~~~C~~C~~~f~~~~~~~~--~~~~~~~~y~C~~C~ 88 (112)
T TIGR00622 14 LPVECPICGLTLILSTHLAR---SYHHLFPLKAFQEIPLEEYNGSRFCFGCQGPFPKPPVSPF--DELKDSHRYVCAVCK 88 (112)
T ss_pred CCCcCCcCCCEEeccchHHH---hhhccCCCcccccccccccCCCCcccCcCCCCCCcccccc--cccccccceeCCCCC
Confidence 35566666666666666655 12211 0 000 0111236666666655431110 001122356677777
Q ss_pred ccCCChHHHHhhcccc
Q 000729 846 RGAAGMKKRIQTLKPL 861 (1326)
Q Consensus 846 k~Fs~~~~L~kH~ksH 861 (1326)
..|-.-=+...|..-|
T Consensus 89 ~~FC~dCD~fiHe~Lh 104 (112)
T TIGR00622 89 NVFCVDCDVFVHESLH 104 (112)
T ss_pred Cccccccchhhhhhcc
Confidence 6666555555555544
No 102
>PF12013 DUF3505: Protein of unknown function (DUF3505); InterPro: IPR022698 This family of proteins is functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 247 to 1018 amino acids in length. This region contains two segments that are likely to be C2H2 zinc binding domains.
Probab=32.49 E-value=53 Score=32.61 Aligned_cols=25 Identities=12% Similarity=-0.160 Sum_probs=14.5
Q ss_pred Cccc----CcCCcccCCchhhhccccccc
Q 000729 810 PHKK----GIRFYAYKLKSGRLSRPRFKK 834 (1326)
Q Consensus 810 pykC----~~C~ksF~~ks~L~~H~r~H~ 834 (1326)
-|.| ..|++.+.+...+.+|.+.+|
T Consensus 80 G~~C~~~~~~C~y~~~~~~~m~~H~~~~H 108 (109)
T PF12013_consen 80 GYRCQCDPPHCGYITRSKKTMRKHWRKEH 108 (109)
T ss_pred CeeeecCCCCCCcEeccHHHHHHHHHHhc
Confidence 3556 556666666666666655544
No 103
>PF11722 zf-TRM13_CCCH: CCCH zinc finger in TRM13 protein; InterPro: IPR021721 This domain is found at the N terminus of TRM13 methyltransferase proteins. It is presumed to be a zinc binding domain. ; GO: 0008168 methyltransferase activity
Probab=32.47 E-value=25 Score=27.45 Aligned_cols=21 Identities=38% Similarity=0.634 Sum_probs=18.4
Q ss_pred cCCcccccccCCCcccccCCC
Q 000729 381 LGTRCKHRALYGSSFCKKHRP 401 (1326)
Q Consensus 381 ~~~~ck~~~~~~~~~c~~~~~ 401 (1326)
-.|.|+-...+|+.||.-|.|
T Consensus 11 K~R~C~m~~~~g~~fC~~H~~ 31 (31)
T PF11722_consen 11 KKRFCKMTRKPGSRFCGEHMP 31 (31)
T ss_pred cccccCCeecCcCCccccCCC
Confidence 357899999999999999975
No 104
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=31.86 E-value=32 Score=36.74 Aligned_cols=37 Identities=14% Similarity=-0.045 Sum_probs=23.5
Q ss_pred hhhcCCcceeeecccCCccCChhHHHHHHHhhccCCCCCCCCCcccCcCCcc
Q 000729 768 SENLGSIRKFICRFCGLKFDLLPDLGRHHQAAHMGPNLVNSRPHKKGIRFYA 819 (1326)
Q Consensus 768 lr~HtgeKpfkC~~CgKsF~sks~L~rHH~r~Htg~~~~~ekpykC~~C~ks 819 (1326)
+.......-|.|+.|+..|+...++.. .|.|+.||..
T Consensus 101 l~~e~~~~~Y~Cp~c~~r~tf~eA~~~---------------~F~Cp~Cg~~ 137 (158)
T TIGR00373 101 LEFETNNMFFICPNMCVRFTFNEAMEL---------------NFTCPRCGAM 137 (158)
T ss_pred HhhccCCCeEECCCCCcEeeHHHHHHc---------------CCcCCCCCCE
Confidence 334444556777777777776666632 4777777764
No 105
>PRK00464 nrdR transcriptional regulator NrdR; Validated
Probab=31.38 E-value=19 Score=38.39 Aligned_cols=17 Identities=24% Similarity=0.428 Sum_probs=10.7
Q ss_pred ccccCccccccCChhHH
Q 000729 673 GYACAICLDSFTNKKVL 689 (1326)
Q Consensus 673 py~C~~CgKsF~sks~L 689 (1326)
.++|+.||++|.+...+
T Consensus 28 ~~~c~~c~~~f~~~e~~ 44 (154)
T PRK00464 28 RRECLACGKRFTTFERV 44 (154)
T ss_pred eeeccccCCcceEeEec
Confidence 36677777777665443
No 106
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=31.13 E-value=27 Score=35.07 Aligned_cols=14 Identities=21% Similarity=0.529 Sum_probs=7.6
Q ss_pred ccccCccccccCCh
Q 000729 673 GYACAICLDSFTNK 686 (1326)
Q Consensus 673 py~C~~CgKsF~sk 686 (1326)
|..|+.||..|.-.
T Consensus 26 PivCP~CG~~~~~~ 39 (108)
T PF09538_consen 26 PIVCPKCGTEFPPE 39 (108)
T ss_pred CccCCCCCCccCcc
Confidence 44566666555544
No 107
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=31.03 E-value=16 Score=29.41 Aligned_cols=12 Identities=33% Similarity=1.052 Sum_probs=7.2
Q ss_pred eeecccCCccCC
Q 000729 777 FICRFCGLKFDL 788 (1326)
Q Consensus 777 fkC~~CgKsF~s 788 (1326)
|+|..||+.|..
T Consensus 6 y~C~~Cg~~fe~ 17 (41)
T smart00834 6 YRCEDCGHTFEV 17 (41)
T ss_pred EEcCCCCCEEEE
Confidence 566666666643
No 108
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=30.53 E-value=38 Score=35.65 Aligned_cols=38 Identities=13% Similarity=0.071 Sum_probs=22.0
Q ss_pred CcceeeecccCCccCChhHHHHHHHhhccCCCCCCCCCcccCcCCccc
Q 000729 773 SIRKFICRFCGLKFDLLPDLGRHHQAAHMGPNLVNSRPHKKGIRFYAY 820 (1326)
Q Consensus 773 geKpfkC~~CgKsF~sks~L~rHH~r~Htg~~~~~ekpykC~~C~ksF 820 (1326)
...-|.|+.|+..|.....+.- .+. ...|.|+.||...
T Consensus 96 ~~~~Y~Cp~C~~~y~~~ea~~~----~d~------~~~f~Cp~Cg~~l 133 (147)
T smart00531 96 NNAYYKCPNCQSKYTFLEANQL----LDM------DGTFTCPRCGEEL 133 (147)
T ss_pred CCcEEECcCCCCEeeHHHHHHh----cCC------CCcEECCCCCCEE
Confidence 3456788888888775443322 011 1247888887654
No 109
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=30.26 E-value=34 Score=27.17 Aligned_cols=10 Identities=30% Similarity=1.109 Sum_probs=5.6
Q ss_pred eeecccCCcc
Q 000729 777 FICRFCGLKF 786 (1326)
Q Consensus 777 fkC~~CgKsF 786 (1326)
|+|..||..+
T Consensus 3 ~~C~~CG~i~ 12 (34)
T cd00729 3 WVCPVCGYIH 12 (34)
T ss_pred EECCCCCCEe
Confidence 5566666543
No 110
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=29.88 E-value=27 Score=45.83 Aligned_cols=47 Identities=19% Similarity=0.167 Sum_probs=31.6
Q ss_pred CCCCcchhhhhhhhhhhhhhhhhHhhh-hCCCCcchhhhhccccccccc
Q 000729 903 RPNSHEILSMARLACCKVSLKASLEEK-YGALPENICLKAAKLCSEHNI 950 (1326)
Q Consensus 903 ~Psn~dIls~a~s~CcK~~l~~sL~~k-~g~lp~~~~~~aa~lcs~~~i 950 (1326)
.|.+..|..+... =.-.|..+.|+.+ -..+||--++-+....+.+.-
T Consensus 602 ~P~hp~i~~~~~~-dy~~F~~~El~~Rk~~~~PPf~~l~~v~~~~~~~~ 649 (730)
T COG1198 602 NPDHPAIQALKRG-DYEAFYEQELAERKELGLPPFSRLAAVIASAKNEE 649 (730)
T ss_pred CCCcHHHHHHHhc-CHHHHHHHHHHHHHhcCCCChhhheeeEecCCCHH
Confidence 3555555544443 4567888899887 588899988877666555543
No 111
>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]
Probab=29.54 E-value=27 Score=30.10 Aligned_cols=29 Identities=14% Similarity=0.135 Sum_probs=19.9
Q ss_pred ceeeecccCCccCChhHHHHHHHhhccCCCCCCCCCcccCcCCcc
Q 000729 775 RKFICRFCGLKFDLLPDLGRHHQAAHMGPNLVNSRPHKKGIRFYA 819 (1326)
Q Consensus 775 KpfkC~~CgKsF~sks~L~rHH~r~Htg~~~~~ekpykC~~C~ks 819 (1326)
..|+|..||+.|. .+.. .....|++||..
T Consensus 5 ~~Y~C~~Cg~~~~---~~~~-------------~~~irCp~Cg~r 33 (49)
T COG1996 5 MEYKCARCGREVE---LDQE-------------TRGIRCPYCGSR 33 (49)
T ss_pred EEEEhhhcCCeee---hhhc-------------cCceeCCCCCcE
Confidence 4688999998882 1222 456888888864
No 112
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=29.47 E-value=17 Score=30.12 Aligned_cols=12 Identities=33% Similarity=1.099 Sum_probs=7.0
Q ss_pred eeecccCCccCC
Q 000729 777 FICRFCGLKFDL 788 (1326)
Q Consensus 777 fkC~~CgKsF~s 788 (1326)
|+|..||..|..
T Consensus 6 y~C~~Cg~~fe~ 17 (42)
T PF09723_consen 6 YRCEECGHEFEV 17 (42)
T ss_pred EEeCCCCCEEEE
Confidence 566666666543
No 113
>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family. This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.
Probab=28.50 E-value=20 Score=30.59 Aligned_cols=11 Identities=36% Similarity=1.219 Sum_probs=6.4
Q ss_pred eeecccCCccC
Q 000729 777 FICRFCGLKFD 787 (1326)
Q Consensus 777 fkC~~CgKsF~ 787 (1326)
|+|..||..|.
T Consensus 6 y~C~~Cg~~fe 16 (52)
T TIGR02605 6 YRCTACGHRFE 16 (52)
T ss_pred EEeCCCCCEeE
Confidence 55666665554
No 114
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=28.41 E-value=26 Score=39.19 Aligned_cols=42 Identities=17% Similarity=0.060 Sum_probs=25.3
Q ss_pred CCCcccCcCCcccCCchhhhccccc---c-------cCCCc-----ccCCCCCccCC
Q 000729 808 SRPHKKGIRFYAYKLKSGRLSRPRF---K-------KGLGA-----VSYRIRNRGAA 849 (1326)
Q Consensus 808 ekpykC~~C~ksF~~ks~L~~H~r~---H-------~gekp-----y~C~~Cgk~Fs 849 (1326)
.+.+.||+|++.|..+.-+....+. . .+..| ..|+.||-+|.
T Consensus 3 ~k~~~CPvC~~~F~~~~vrs~~~r~~~~d~D~~~~Y~~vnP~~Y~V~vCP~CgyA~~ 59 (214)
T PF09986_consen 3 DKKITCPVCGKEFKTKKVRSGKIRVIRRDSDFCPRYKGVNPLFYEVWVCPHCGYAAF 59 (214)
T ss_pred CCceECCCCCCeeeeeEEEcCCceEeeecCCCccccCCCCCeeeeEEECCCCCCccc
Confidence 3556777777777766555444432 1 12233 56999998875
No 115
>PF14353 CpXC: CpXC protein
Probab=28.23 E-value=37 Score=34.65 Aligned_cols=25 Identities=12% Similarity=-0.148 Sum_probs=19.2
Q ss_pred CCcccCcCCcccCCchhhhcccccc
Q 000729 809 RPHKKGIRFYAYKLKSGRLSRPRFK 833 (1326)
Q Consensus 809 kpykC~~C~ksF~~ks~L~~H~r~H 833 (1326)
-.|.|+.||+.|.-...+..|-..|
T Consensus 37 ~~~~CP~Cg~~~~~~~p~lY~D~~~ 61 (128)
T PF14353_consen 37 FSFTCPSCGHKFRLEYPLLYHDPEK 61 (128)
T ss_pred CEEECCCCCCceecCCCEEEEcCCC
Confidence 4688999998888887777776544
No 116
>PHA00626 hypothetical protein
Probab=28.06 E-value=20 Score=31.54 Aligned_cols=13 Identities=8% Similarity=-0.455 Sum_probs=8.5
Q ss_pred CcccCcCCcccCC
Q 000729 810 PHKKGIRFYAYKL 822 (1326)
Q Consensus 810 pykC~~C~ksF~~ 822 (1326)
.|+|+.|++.|+.
T Consensus 23 rYkCkdCGY~ft~ 35 (59)
T PHA00626 23 DYVCCDCGYNDSK 35 (59)
T ss_pred ceEcCCCCCeech
Confidence 5667777666654
No 117
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=27.55 E-value=39 Score=36.80 Aligned_cols=19 Identities=21% Similarity=0.532 Sum_probs=11.2
Q ss_pred cceeeecccCCccCChhHH
Q 000729 774 IRKFICRFCGLKFDLLPDL 792 (1326)
Q Consensus 774 eKpfkC~~CgKsF~sks~L 792 (1326)
..-|.|+.|++.|+...++
T Consensus 115 ~~~Y~Cp~C~~rytf~eA~ 133 (178)
T PRK06266 115 NMFFFCPNCHIRFTFDEAM 133 (178)
T ss_pred CCEEECCCCCcEEeHHHHh
Confidence 3456666666666655544
No 118
>KOG2461 consensus Transcription factor BLIMP-1/PRDI-BF1, contains C2H2-type Zn-finger and SET domains [Transcription]
Probab=26.59 E-value=87 Score=38.41 Aligned_cols=79 Identities=0% Similarity=-0.305 Sum_probs=43.5
Q ss_pred chhhhhhhhhcCCcceeeecccCCccCChhHHHHHHHhhccCCCCCCCCCcccCcCCcccCCchhhhcccccccCCCccc
Q 000729 761 SASVENHSENLGSIRKFICRFCGLKFDLLPDLGRHHQAAHMGPNLVNSRPHKKGIRFYAYKLKSGRLSRPRFKKGLGAVS 840 (1326)
Q Consensus 761 ~~sL~~Hlr~HtgeKpfkC~~CgKsF~sks~L~rHH~r~Htg~~~~~ekpykC~~C~ksF~~ks~L~~H~r~H~gekpy~ 840 (1326)
.+....|...|++..+.-++++.+.+.....+.. +...|.+ +.++.+..+...+.....+..+..+|+....+.
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (396)
T KOG2461|consen 316 QLVLDQSEVPATVSVWTGETIPVRTPAGQLIYTQ-SHSMEVA-----EPTDMAPNQIWKIYHTGVLGFLIITTDESECNN 389 (396)
T ss_pred ccccccccccccccccCcCcccccccccccchhh-hhhcccC-----CCCcccccccccceeccccceeeeecccccccc
Confidence 3345555666666666666666666666666666 5555555 445555444444444444455555555555555
Q ss_pred CCCCC
Q 000729 841 YRIRN 845 (1326)
Q Consensus 841 C~~Cg 845 (1326)
+..|+
T Consensus 390 ~~~~~ 394 (396)
T KOG2461|consen 390 MSFVC 394 (396)
T ss_pred ccccC
Confidence 44443
No 119
>PF14353 CpXC: CpXC protein
Probab=26.28 E-value=24 Score=35.98 Aligned_cols=20 Identities=40% Similarity=0.541 Sum_probs=15.7
Q ss_pred ceeeecccCCccCChhHHHH
Q 000729 775 RKFICRFCGLKFDLLPDLGR 794 (1326)
Q Consensus 775 KpfkC~~CgKsF~sks~L~r 794 (1326)
-.|.|+.||..|.-...+.-
T Consensus 37 ~~~~CP~Cg~~~~~~~p~lY 56 (128)
T PF14353_consen 37 FSFTCPSCGHKFRLEYPLLY 56 (128)
T ss_pred CEEECCCCCCceecCCCEEE
Confidence 45899999999977666655
No 120
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=26.01 E-value=47 Score=26.70 Aligned_cols=14 Identities=21% Similarity=0.667 Sum_probs=6.7
Q ss_pred eecccCCccCChhH
Q 000729 778 ICRFCGLKFDLLPD 791 (1326)
Q Consensus 778 kC~~CgKsF~sks~ 791 (1326)
.|+.|+..|.-..+
T Consensus 4 ~Cp~C~~~y~i~d~ 17 (36)
T PF13717_consen 4 TCPNCQAKYEIDDE 17 (36)
T ss_pred ECCCCCCEEeCCHH
Confidence 45555555544433
No 121
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=25.97 E-value=70 Score=32.36 Aligned_cols=85 Identities=20% Similarity=0.342 Sum_probs=54.7
Q ss_pred CCcccCCCCCcccCChhhHhhhhhhccCc------ccccc--CCccccCccccccCChhHHHhHhhhccccccccccccc
Q 000729 637 EKTHKCKICSQVFLHDQELGVHWMDNHKK------EAQWL--FRGYACAICLDSFTNKKVLESHVQERHHVQFVEQCMLQ 708 (1326)
Q Consensus 637 ekpfkC~~CgK~F~~~s~L~~H~~~~Ht~------e~~~~--~kpy~C~~CgKsF~sks~L~~H~r~Hh~e~~~~~~kpf 708 (1326)
+-|-.|++|+-..-...+|.+. -.|.- +.++. .+...|--|.+.|....... .++ ......|
T Consensus 13 ~LP~~CpiCgLtLVss~HLARS--yHHLfPl~~f~ev~~~~~~~~~~C~~C~~~f~~~~~~~------~~~--~~~~~~y 82 (112)
T TIGR00622 13 ELPVECPICGLTLILSTHLARS--YHHLFPLKAFQEIPLEEYNGSRFCFGCQGPFPKPPVSP------FDE--LKDSHRY 82 (112)
T ss_pred CCCCcCCcCCCEEeccchHHHh--hhccCCCcccccccccccCCCCcccCcCCCCCCccccc------ccc--cccccce
Confidence 4577899999998888888774 12311 11110 01224989999998654211 111 1112568
Q ss_pred cccCCCCccCChhHHhhhhhhccc
Q 000729 709 QCIPCGSHFGNTEELWLHVQSVHA 732 (1326)
Q Consensus 709 kC~~Cgk~F~sks~L~~Hv~r~H~ 732 (1326)
+|+.|...|--.-..-.| ...|.
T Consensus 83 ~C~~C~~~FC~dCD~fiH-e~Lh~ 105 (112)
T TIGR00622 83 VCAVCKNVFCVDCDVFVH-ESLHC 105 (112)
T ss_pred eCCCCCCccccccchhhh-hhccC
Confidence 899999999999998899 77775
No 122
>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]
Probab=25.94 E-value=45 Score=29.90 Aligned_cols=34 Identities=15% Similarity=0.143 Sum_probs=14.7
Q ss_pred CCCCCccccCCCchhhhhhh-hhcCCcceeeecccCC
Q 000729 749 GEDSPKKLELGYSASVENHS-ENLGSIRKFICRFCGL 784 (1326)
Q Consensus 749 ~ekp~~C~~Cgk~~sL~~Hl-r~HtgeKpfkC~~CgK 784 (1326)
+.-.|.|+.||..--..-+. |.+ ..+|+|+.||.
T Consensus 24 ~~v~F~CPnCGe~~I~Rc~~CRk~--g~~Y~Cp~CGF 58 (61)
T COG2888 24 TAVKFPCPNCGEVEIYRCAKCRKL--GNPYRCPKCGF 58 (61)
T ss_pred ceeEeeCCCCCceeeehhhhHHHc--CCceECCCcCc
Confidence 33445566666332222222 111 14566666653
No 123
>smart00391 MBD Methyl-CpG binding domain. Methyl-CpG binding domain, also known as the TAM (TTF-IIP5, ARBP, MeCP1) domain
Probab=25.75 E-value=28 Score=32.79 Aligned_cols=26 Identities=8% Similarity=-0.089 Sum_probs=21.5
Q ss_pred CccccccCCCcCCc-cccccceeeecC
Q 000729 986 GIRSSDSSDFVNNQ-WEVDECHCIIDS 1011 (1326)
Q Consensus 986 ~~~~v~~~~p~~~~-w~~~e~~~~~~~ 1011 (1326)
++..|.|-+|+|.. +.+.|++.+|..
T Consensus 26 ~~~dV~Y~sP~GkklRs~~ev~~YL~~ 52 (77)
T smart00391 26 GKFDVYYISPCGKKLRSKSELARYLHK 52 (77)
T ss_pred CcccEEEECCCCCeeeCHHHHHHHHHh
Confidence 35668899999999 999998887754
No 124
>PF02892 zf-BED: BED zinc finger; InterPro: IPR003656 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents predicted BED-type zinc finger domains. The BED finger which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain []. Some proteins known to contain a BED domain include animal, plant and fungi AC1 and Hobo-like transposases; Caenorhabditis elegans Dpy-20 protein, a predicted cuticular gene transcriptional regulator; Drosophila BEAF (boundary element-associated factor), thought to be involved in chromatin insulation; Drosophila DREF, a transcriptional regulator for S-phase genes; and tobacco 3AF1 and tomato E4/E8-BP1, light- and ethylene-regulated DNA binding proteins that contain two BED fingers. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding; PDB: 2DJR_A 2CT5_A.
Probab=25.41 E-value=57 Score=26.88 Aligned_cols=28 Identities=29% Similarity=0.642 Sum_probs=16.1
Q ss_pred CcceeeecccCCccCCh----hHHHHHHHhhc
Q 000729 773 SIRKFICRFCGLKFDLL----PDLGRHHQAAH 800 (1326)
Q Consensus 773 geKpfkC~~CgKsF~sk----s~L~rHH~r~H 800 (1326)
+....+|.+|++.+... ++|.+|..+.|
T Consensus 13 ~~~~a~C~~C~~~~~~~~~~ts~l~~HL~~~h 44 (45)
T PF02892_consen 13 DKKKAKCKYCGKVIKYSSGGTSNLKRHLKKKH 44 (45)
T ss_dssp CSS-EEETTTTEE-----SSTHHHHHHHHHTT
T ss_pred CcCeEEeCCCCeEEeeCCCcHHHHHHhhhhhC
Confidence 34567888888888764 67888544555
No 125
>PF08879 WRC: WRC; InterPro: IPR014977 WRC is named after the conserved Trp-Arg-Cys motif, it contains two distinctive features: a putative nuclear localisation signal and a zinc-finger motif (C3H). It is suggested that WRC functions in DNA binding []. ; GO: 0005515 protein binding
Probab=25.06 E-value=25 Score=29.93 Aligned_cols=20 Identities=50% Similarity=0.865 Sum_probs=18.2
Q ss_pred cCCcccccccCCCcccccCC
Q 000729 381 LGTRCKHRALYGSSFCKKHR 400 (1326)
Q Consensus 381 ~~~~ck~~~~~~~~~c~~~~ 400 (1326)
-|=||+..+++|.++|.+|.
T Consensus 13 K~WrC~~~a~~g~~~Ce~H~ 32 (46)
T PF08879_consen 13 KGWRCSRRALPGYSLCEHHL 32 (46)
T ss_pred CccccCCccCCCccHHHHHH
Confidence 45699999999999999997
No 126
>COG1997 RPL43A Ribosomal protein L37AE/L43A [Translation, ribosomal structure and biogenesis]
Probab=24.87 E-value=28 Score=33.43 Aligned_cols=13 Identities=8% Similarity=-0.401 Sum_probs=7.9
Q ss_pred CcccCcCCcccCC
Q 000729 810 PHKKGIRFYAYKL 822 (1326)
Q Consensus 810 pykC~~C~ksF~~ 822 (1326)
-+.|..|+..|.-
T Consensus 53 IW~C~kCg~~fAG 65 (89)
T COG1997 53 IWKCRKCGAKFAG 65 (89)
T ss_pred eEEcCCCCCeecc
Confidence 4666666666653
No 127
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=24.62 E-value=48 Score=29.70 Aligned_cols=32 Identities=22% Similarity=0.285 Sum_probs=19.2
Q ss_pred ceeeecccCCc-cCChhHHHHHHHhhccCCCCCCCCCcccCcCCc
Q 000729 775 RKFICRFCGLK-FDLLPDLGRHHQAAHMGPNLVNSRPHKKGIRFY 818 (1326)
Q Consensus 775 KpfkC~~CgKs-F~sks~L~rHH~r~Htg~~~~~ekpykC~~C~k 818 (1326)
-.|.|+.||+. -.+-..-++ + ..+|.|+.||.
T Consensus 24 ~~F~CPnCG~~~I~RC~~CRk-----~-------~~~Y~CP~CGF 56 (59)
T PRK14890 24 VKFLCPNCGEVIIYRCEKCRK-----Q-------SNPYTCPKCGF 56 (59)
T ss_pred CEeeCCCCCCeeEeechhHHh-----c-------CCceECCCCCC
Confidence 35788888876 333333222 1 35788888874
No 128
>PF02892 zf-BED: BED zinc finger; InterPro: IPR003656 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents predicted BED-type zinc finger domains. The BED finger which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain []. Some proteins known to contain a BED domain include animal, plant and fungi AC1 and Hobo-like transposases; Caenorhabditis elegans Dpy-20 protein, a predicted cuticular gene transcriptional regulator; Drosophila BEAF (boundary element-associated factor), thought to be involved in chromatin insulation; Drosophila DREF, a transcriptional regulator for S-phase genes; and tobacco 3AF1 and tomato E4/E8-BP1, light- and ethylene-regulated DNA binding proteins that contain two BED fingers. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding; PDB: 2DJR_A 2CT5_A.
Probab=24.14 E-value=45 Score=27.49 Aligned_cols=28 Identities=36% Similarity=0.629 Sum_probs=13.7
Q ss_pred CCCcccCCCCCcccCCh----hhHhhhhhhcc
Q 000729 636 DEKTHKCKICSQVFLHD----QELGVHWMDNH 663 (1326)
Q Consensus 636 ~ekpfkC~~CgK~F~~~----s~L~~H~~~~H 663 (1326)
+....+|..|++.+... +.|.+|++..|
T Consensus 13 ~~~~a~C~~C~~~~~~~~~~ts~l~~HL~~~h 44 (45)
T PF02892_consen 13 DKKKAKCKYCGKVIKYSSGGTSNLKRHLKKKH 44 (45)
T ss_dssp CSS-EEETTTTEE-----SSTHHHHHHHHHTT
T ss_pred CcCeEEeCCCCeEEeeCCCcHHHHHHhhhhhC
Confidence 34556777777776653 55666643433
No 129
>PF08666 SAF: SAF domain; InterPro: IPR013974 This entry includes a range of different proteins, such as antifreeze proteins, flagellar FlgA proteins, and CpaB pilus proteins. ; PDB: 1C89_A 3NLA_A 3RDN_A 1C8A_A 3FRN_A 1WVO_A 3K3S_H 3G8R_B 1XUU_A 1XUZ_A ....
Probab=23.56 E-value=47 Score=29.08 Aligned_cols=16 Identities=38% Similarity=0.468 Sum_probs=11.7
Q ss_pred EEEEccCCCCCCeEEE
Q 000729 1285 GLYASRDIAVGEELTY 1300 (1326)
Q Consensus 1285 ~~fA~RdI~~GEELT~ 1300 (1326)
.++|.|||++|+.|+-
T Consensus 3 vvVA~~di~~G~~i~~ 18 (63)
T PF08666_consen 3 VVVAARDIPAGTVITA 18 (63)
T ss_dssp EEEESSTB-TT-BECT
T ss_pred EEEEeCccCCCCEEcc
Confidence 4789999999999953
No 130
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=23.44 E-value=44 Score=35.67 Aligned_cols=35 Identities=11% Similarity=0.357 Sum_probs=24.4
Q ss_pred ccCCCcccCCCCCcccCChhhHhhhhhhccCccccccCCccccCcccccc
Q 000729 634 SEDEKTHKCKICSQVFLHDQELGVHWMDNHKKEAQWLFRGYACAICLDSF 683 (1326)
Q Consensus 634 h~~ekpfkC~~CgK~F~~~s~L~~H~~~~Ht~e~~~~~kpy~C~~CgKsF 683 (1326)
..+..-|.|+.|+..|+....+.. .|.|+.||...
T Consensus 104 e~~~~~Y~Cp~c~~r~tf~eA~~~---------------~F~Cp~Cg~~L 138 (158)
T TIGR00373 104 ETNNMFFICPNMCVRFTFNEAMEL---------------NFTCPRCGAML 138 (158)
T ss_pred ccCCCeEECCCCCcEeeHHHHHHc---------------CCcCCCCCCEe
Confidence 344566888888888877666531 28888888753
No 131
>PF12013 DUF3505: Protein of unknown function (DUF3505); InterPro: IPR022698 This family of proteins is functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 247 to 1018 amino acids in length. This region contains two segments that are likely to be C2H2 zinc binding domains.
Probab=22.87 E-value=74 Score=31.55 Aligned_cols=24 Identities=21% Similarity=0.400 Sum_probs=21.3
Q ss_pred ccc----cCCCCccCChhHHhhhhhhcc
Q 000729 708 QQC----IPCGSHFGNTEELWLHVQSVH 731 (1326)
Q Consensus 708 fkC----~~Cgk~F~sks~L~~Hv~r~H 731 (1326)
|.| ..|+..+.+...+.+|++..|
T Consensus 81 ~~C~~~~~~C~y~~~~~~~m~~H~~~~H 108 (109)
T PF12013_consen 81 YRCQCDPPHCGYITRSKKTMRKHWRKEH 108 (109)
T ss_pred eeeecCCCCCCcEeccHHHHHHHHHHhc
Confidence 789 999999999999999977666
No 132
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=22.70 E-value=50 Score=34.73 Aligned_cols=38 Identities=16% Similarity=0.154 Sum_probs=26.6
Q ss_pred CCCCCccccCCCchhhhhhhhhcCCcceeeecccCCcc
Q 000729 749 GEDSPKKLELGYSASVENHSENLGSIRKFICRFCGLKF 786 (1326)
Q Consensus 749 ~ekp~~C~~Cgk~~sL~~Hlr~HtgeKpfkC~~CgKsF 786 (1326)
...-|.|+.|+..+.+..-+........|.|+.||...
T Consensus 96 ~~~~Y~Cp~C~~~y~~~ea~~~~d~~~~f~Cp~Cg~~l 133 (147)
T smart00531 96 NNAYYKCPNCQSKYTFLEANQLLDMDGTFTCPRCGEEL 133 (147)
T ss_pred CCcEEECcCCCCEeeHHHHHHhcCCCCcEECCCCCCEE
Confidence 45568899999888765555432224559999999875
No 133
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=22.50 E-value=53 Score=26.46 Aligned_cols=12 Identities=8% Similarity=-0.167 Sum_probs=6.5
Q ss_pred CCcccCcCCccc
Q 000729 809 RPHKKGIRFYAY 820 (1326)
Q Consensus 809 kpykC~~C~ksF 820 (1326)
+..+|+.|+..|
T Consensus 24 ~~vrC~~C~~~f 35 (37)
T PF13719_consen 24 RKVRCPKCGHVF 35 (37)
T ss_pred cEEECCCCCcEe
Confidence 345555555554
No 134
>PRK00464 nrdR transcriptional regulator NrdR; Validated
Probab=22.50 E-value=38 Score=36.11 Aligned_cols=15 Identities=0% Similarity=-0.363 Sum_probs=8.2
Q ss_pred cccCcCCcccCCchh
Q 000729 811 HKKGIRFYAYKLKSG 825 (1326)
Q Consensus 811 ykC~~C~ksF~~ks~ 825 (1326)
++|+.||++|.....
T Consensus 29 ~~c~~c~~~f~~~e~ 43 (154)
T PRK00464 29 RECLACGKRFTTFER 43 (154)
T ss_pred eeccccCCcceEeEe
Confidence 556666665554443
No 135
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=22.47 E-value=46 Score=36.32 Aligned_cols=34 Identities=21% Similarity=0.541 Sum_probs=23.4
Q ss_pred CCCcccCCCCCcccCChhhHhhhhhhccCccccccCCccccCccccccC
Q 000729 636 DEKTHKCKICSQVFLHDQELGVHWMDNHKKEAQWLFRGYACAICLDSFT 684 (1326)
Q Consensus 636 ~ekpfkC~~CgK~F~~~s~L~~H~~~~Ht~e~~~~~kpy~C~~CgKsF~ 684 (1326)
+..-|.|+.|+..|+....+. ..|.|+.||....
T Consensus 114 ~~~~Y~Cp~C~~rytf~eA~~---------------~~F~Cp~Cg~~L~ 147 (178)
T PRK06266 114 NNMFFFCPNCHIRFTFDEAME---------------YGFRCPQCGEMLE 147 (178)
T ss_pred CCCEEECCCCCcEEeHHHHhh---------------cCCcCCCCCCCCe
Confidence 445688888888887766542 2388888887543
No 136
>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....
Probab=22.12 E-value=46 Score=26.21 Aligned_cols=11 Identities=36% Similarity=1.108 Sum_probs=6.6
Q ss_pred eeecccCCccC
Q 000729 777 FICRFCGLKFD 787 (1326)
Q Consensus 777 fkC~~CgKsF~ 787 (1326)
|.|..||..+.
T Consensus 1 Y~C~~Cg~~~~ 11 (32)
T PF03604_consen 1 YICGECGAEVE 11 (32)
T ss_dssp EBESSSSSSE-
T ss_pred CCCCcCCCeeE
Confidence 56667776664
No 137
>KOG2186 consensus Cell growth-regulating nucleolar protein [Cell cycle control, cell division, chromosome partitioning]
Probab=21.64 E-value=53 Score=37.38 Aligned_cols=30 Identities=27% Similarity=0.447 Sum_probs=16.0
Q ss_pred hhhhhhhhcCCcceeeecccCCccCChhHHHH
Q 000729 763 SVENHSENLGSIRKFICRFCGLKFDLLPDLGR 794 (1326)
Q Consensus 763 sL~~Hlr~HtgeKpfkC~~CgKsF~sks~L~r 794 (1326)
.+.+|+..-++ .-|.|-.|++.|.+ .++..
T Consensus 17 ~vekH~srCrn-~~fSCIDC~k~F~~-~sYkn 46 (276)
T KOG2186|consen 17 QVEKHMSRCRN-AYFSCIDCGKTFER-VSYKN 46 (276)
T ss_pred chHHHHHhccC-CeeEEeeccccccc-chhhh
Confidence 45555554444 45666666666655 44444
No 138
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=21.40 E-value=56 Score=33.66 Aligned_cols=36 Identities=28% Similarity=0.216 Sum_probs=0.0
Q ss_pred eeeecccCCccCChhHHHHHHHhhccCCCCCCCCCcccCcCCcccCCchhhhc
Q 000729 776 KFICRFCGLKFDLLPDLGRHHQAAHMGPNLVNSRPHKKGIRFYAYKLKSGRLS 828 (1326)
Q Consensus 776 pfkC~~CgKsF~sks~L~rHH~r~Htg~~~~~ekpykC~~C~ksF~~ks~L~~ 828 (1326)
...|+.||+.|.... ..|-.|++||..|.....++.
T Consensus 9 Kr~Cp~cg~kFYDLn-----------------k~p~vcP~cg~~~~~~~~~~~ 44 (129)
T TIGR02300 9 KRICPNTGSKFYDLN-----------------RRPAVSPYTGEQFPPEEALKS 44 (129)
T ss_pred cccCCCcCccccccC-----------------CCCccCCCcCCccCcchhhcc
No 139
>KOG2186 consensus Cell growth-regulating nucleolar protein [Cell cycle control, cell division, chromosome partitioning]
Probab=20.87 E-value=50 Score=37.63 Aligned_cols=48 Identities=15% Similarity=0.396 Sum_probs=26.3
Q ss_pred ccCCCCCcccCChhhHhhhhhhccCccccccCCccccCccccccCChhHHHhHhhhc
Q 000729 640 HKCKICSQVFLHDQELGVHWMDNHKKEAQWLFRGYACAICLDSFTNKKVLESHVQER 696 (1326)
Q Consensus 640 fkC~~CgK~F~~~s~L~~H~~~~Ht~e~~~~~kpy~C~~CgKsF~sks~L~~H~r~H 696 (1326)
|.|..||..... ..+.+|+-+-|.. -|.|-.|++.|.. .....|...-
T Consensus 4 FtCnvCgEsvKK-p~vekH~srCrn~-------~fSCIDC~k~F~~-~sYknH~kCI 51 (276)
T KOG2186|consen 4 FTCNVCGESVKK-PQVEKHMSRCRNA-------YFSCIDCGKTFER-VSYKNHTKCI 51 (276)
T ss_pred Eehhhhhhhccc-cchHHHHHhccCC-------eeEEeeccccccc-chhhhhhhhc
Confidence 566667666543 3445564333332 3666667776666 4455565433
No 140
>PF09845 DUF2072: Zn-ribbon containing protein (DUF2072); InterPro: IPR018645 This archaeal Zinc-ribbon containing proteins have no known function.
Probab=20.64 E-value=49 Score=34.21 Aligned_cols=15 Identities=27% Similarity=0.474 Sum_probs=10.5
Q ss_pred eeeecccCCccCChh
Q 000729 776 KFICRFCGLKFDLLP 790 (1326)
Q Consensus 776 pfkC~~CgKsF~sks 790 (1326)
|++|..||+.|..-+
T Consensus 1 PH~Ct~Cg~~f~dgs 15 (131)
T PF09845_consen 1 PHQCTKCGRVFEDGS 15 (131)
T ss_pred CcccCcCCCCcCCCc
Confidence 567777777777654
No 141
>KOG1081 consensus Transcription factor NSD1 and related SET domain proteins [Transcription]
Probab=20.17 E-value=28 Score=43.48 Aligned_cols=130 Identities=15% Similarity=-0.066 Sum_probs=77.4
Q ss_pred CCCCcc---ccccccccCCCeEEEeeeEEecHH--HHHHhhccccCCCcceEEecCcccccccccccCceeEEEeccccC
Q 000729 1179 ENKGWA---VRAGQAILRGTFVCEYIGEVLDEL--ETNKRRSRYGRDGCGYMLNIGAHINDMGRLIEGQVRYVIDATKYG 1253 (1326)
Q Consensus 1179 ~~kGwG---VrA~e~I~~GtfI~EY~Gevit~~--ea~~r~~~y~~~~~~Ylf~l~~~~~~~~~~~~~~~~~~IDA~~~G 1253 (1326)
+..+|+ .+|.+.+..|++|..++|++.-.. ....+..........-+|..... ......++...|
T Consensus 121 ~~c~~~~~d~~~~~~~~~~~~vw~~vg~~~~~~c~vc~~~~~~~~~~~~~~~f~~~~~----------~~~~~~~~~~~g 190 (463)
T KOG1081|consen 121 EKCSKRCTDCRAFKKREVGDLVWSKVGEYPWWPCMVCHDPLLPKGMKHDHVNFFGCYA----------WTHEKRVFPYEG 190 (463)
T ss_pred cccccCCcceeeeccccceeEEeEEcCcccccccceecCcccchhhccccceeccchh----------hHHHhhhhhccc
Confidence 455666 888889999999999999997654 11111100000000011111100 011233444499
Q ss_pred CccccccCCCCCCceEEEEEEecccCceeEEEEEEccCCCCCCe------EEEecCCCCCCCCCceeecCCCCCcc
Q 000729 1254 NVSRFINHSCFPNLVNHQVLVESMDYQRAHIGLYASRDIAVGEE------LTYDYHYELLSGEGYPCHCGASKCRG 1323 (1326)
Q Consensus 1254 NvaRFINHSC~PN~~~~~V~v~~~d~~~~~I~~fA~RdI~~GEE------LT~DYg~~~~~~~~~~C~CGs~~CRg 1323 (1326)
+..++|+|++.|+-....+... ..+++..++.+-++-++- ++.+|....+ .....+.+++..|..
T Consensus 191 ~~~~~l~~~~~~~s~~~~~~~~----~~~r~~~~~~q~~~~~~~~e~k~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 261 (463)
T KOG1081|consen 191 QSSKLIPHSKKPASTMSEKIKE----AKARFGKLKAQWEAGIKQKELKPEEYKRIKVVCP-IGDQQIYSAAVSCIK 261 (463)
T ss_pred hHHHhhhhccccchhhhhhhhc----ccchhhhcccchhhccchhhcccccccccccccC-cCcccccchhhhhhh
Confidence 9999999999999887777766 677888888888877766 5555543322 123335555555543
Done!