Query 000730
Match_columns 1326
No_of_seqs 259 out of 384
Neff 6.9
Searched_HMMs 46136
Date Mon Apr 1 22:45:07 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000730.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000730hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2032 Uncharacterized conser 100.0 3.8E-55 8.2E-60 498.8 34.0 490 780-1298 12-532 (533)
2 KOG2023 Nuclear transport rece 99.6 6.2E-13 1.3E-17 157.2 32.3 569 622-1303 86-781 (885)
3 KOG2171 Karyopherin (importin) 99.3 1.1E-07 2.4E-12 120.9 49.2 522 707-1301 106-717 (1075)
4 KOG2171 Karyopherin (importin) 99.2 7.1E-06 1.5E-10 104.9 57.3 775 298-1256 119-1001(1075)
5 PRK09687 putative lyase; Provi 99.1 5.9E-09 1.3E-13 119.5 20.3 226 985-1294 53-279 (280)
6 PRK09687 putative lyase; Provi 99.0 1.3E-08 2.8E-13 116.7 19.7 224 1028-1297 25-250 (280)
7 KOG2032 Uncharacterized conser 99.0 3.8E-08 8.2E-13 115.1 22.9 489 404-1054 21-530 (533)
8 PRK13800 putative oxidoreducta 98.9 2.7E-08 5.8E-13 131.6 21.3 244 986-1295 621-865 (897)
9 PRK13800 putative oxidoreducta 98.9 7.4E-08 1.6E-12 127.5 22.8 242 985-1293 651-895 (897)
10 PTZ00429 beta-adaptin; Provisi 98.7 3.4E-06 7.4E-11 107.9 29.1 313 962-1300 46-401 (746)
11 KOG1824 TATA-binding protein-i 98.7 0.0037 8E-08 78.7 64.7 889 17-1180 48-1036(1233)
12 PLN03200 cellulose synthase-in 98.6 4.6E-05 1E-09 104.6 36.8 270 987-1299 447-725 (2102)
13 PF01602 Adaptin_N: Adaptin N 98.6 7E-06 1.5E-10 102.9 25.2 307 961-1299 19-335 (526)
14 KOG1824 TATA-binding protein-i 98.5 0.016 3.4E-07 73.3 57.3 322 963-1296 627-1035(1233)
15 PLN03200 cellulose synthase-in 98.4 0.00044 9.6E-09 95.4 35.7 270 986-1298 488-765 (2102)
16 TIGR02270 conserved hypothetic 98.4 2.6E-05 5.6E-10 93.9 21.6 207 1028-1296 88-295 (410)
17 KOG1242 Protein containing ada 98.3 4.1E-05 8.9E-10 93.0 22.2 302 985-1298 133-445 (569)
18 PF01602 Adaptin_N: Adaptin N 98.3 8.4E-06 1.8E-10 102.1 17.2 310 971-1305 64-378 (526)
19 PF10508 Proteasom_PSMB: Prote 98.2 0.00041 8.9E-09 86.5 27.8 299 991-1297 43-366 (503)
20 KOG0213 Splicing factor 3b, su 98.2 0.014 3E-07 71.9 38.2 299 963-1300 696-1027(1172)
21 KOG0211 Protein phosphatase 2A 98.1 0.0021 4.6E-08 82.1 31.7 293 992-1296 361-663 (759)
22 KOG0915 Uncharacterized conser 98.1 0.0066 1.4E-07 80.0 35.3 323 933-1260 941-1313(1702)
23 KOG1241 Karyopherin (importin) 98.0 0.028 6E-07 70.0 36.5 527 724-1294 95-713 (859)
24 KOG0166 Karyopherin (importin) 98.0 0.00018 3.9E-09 87.1 17.7 293 988-1296 68-392 (514)
25 KOG1242 Protein containing ada 97.9 0.0088 1.9E-07 73.3 30.7 517 630-1291 21-558 (569)
26 COG5181 HSH155 U2 snRNP splice 97.8 0.13 2.9E-06 62.5 37.2 292 981-1292 599-907 (975)
27 PTZ00429 beta-adaptin; Provisi 97.8 0.0073 1.6E-07 78.0 28.3 271 984-1279 138-416 (746)
28 TIGR02270 conserved hypothetic 97.8 0.0011 2.5E-08 80.0 19.9 123 1025-1180 53-176 (410)
29 PF12348 CLASP_N: CLASP N term 97.8 0.0003 6.5E-09 78.4 13.9 182 1076-1298 19-207 (228)
30 COG1413 FOG: HEAT repeat [Ener 97.6 0.0011 2.4E-08 78.3 16.0 110 1026-1167 43-153 (335)
31 KOG2023 Nuclear transport rece 97.5 0.056 1.2E-06 66.3 28.6 512 702-1296 153-731 (885)
32 COG1413 FOG: HEAT repeat [Ener 97.5 0.0051 1.1E-07 72.8 20.0 268 985-1307 42-314 (335)
33 KOG1060 Vesicle coat complex A 97.5 0.02 4.4E-07 71.2 24.6 248 1028-1296 110-457 (968)
34 KOG0166 Karyopherin (importin) 97.4 0.0024 5.1E-08 77.7 15.9 272 991-1301 157-440 (514)
35 COG5181 HSH155 U2 snRNP splice 97.4 0.027 5.8E-07 68.2 24.1 359 926-1299 292-761 (975)
36 KOG1241 Karyopherin (importin) 97.4 0.5 1.1E-05 59.4 35.1 333 898-1300 164-533 (859)
37 PF12348 CLASP_N: CLASP N term 97.3 0.0019 4.2E-08 71.9 11.9 181 1002-1191 23-217 (228)
38 PF13646 HEAT_2: HEAT repeats; 97.2 0.00064 1.4E-08 63.7 6.3 86 1029-1131 2-88 (88)
39 PF13513 HEAT_EZ: HEAT-like re 97.2 0.00073 1.6E-08 57.9 5.6 55 1238-1295 1-55 (55)
40 PF10508 Proteasom_PSMB: Prote 97.2 0.03 6.6E-07 70.1 22.0 280 985-1298 118-421 (503)
41 PF13646 HEAT_2: HEAT repeats; 97.1 0.0043 9.3E-08 58.0 10.2 86 1154-1293 2-88 (88)
42 KOG0213 Splicing factor 3b, su 97.0 1.7 3.6E-05 54.6 39.6 342 929-1292 731-1102(1172)
43 KOG4224 Armadillo repeat prote 97.0 0.005 1.1E-07 70.3 11.1 144 1117-1296 345-492 (550)
44 PF05004 IFRD: Interferon-rela 97.0 0.035 7.7E-07 65.0 18.8 213 1066-1300 45-260 (309)
45 PF12717 Cnd1: non-SMC mitotic 96.9 0.018 3.9E-07 62.0 14.9 165 1002-1175 4-174 (178)
46 KOG0211 Protein phosphatase 2A 96.9 0.011 2.4E-07 75.8 15.2 248 1002-1293 214-462 (759)
47 COG5096 Vesicle coat complex, 96.7 0.19 4.2E-06 64.3 23.2 295 975-1296 81-385 (757)
48 PF13513 HEAT_EZ: HEAT-like re 96.6 0.0037 7.9E-08 53.5 5.1 52 1040-1091 1-55 (55)
49 PF12719 Cnd3: Nuclear condens 96.5 0.16 3.5E-06 59.3 20.1 132 1023-1159 23-163 (298)
50 PF12717 Cnd1: non-SMC mitotic 96.5 0.059 1.3E-06 58.0 15.0 113 1039-1164 1-114 (178)
51 KOG1062 Vesicle coat complex A 96.3 0.24 5.2E-06 62.5 20.3 297 979-1302 65-384 (866)
52 KOG2025 Chromosome condensatio 96.3 0.23 5E-06 61.8 19.7 165 983-1169 41-211 (892)
53 PF12755 Vac14_Fab1_bd: Vacuol 96.3 0.012 2.6E-07 56.9 7.1 86 1082-1172 4-89 (97)
54 KOG1059 Vesicle coat complex A 96.2 0.57 1.2E-05 58.6 22.3 168 961-1135 120-328 (877)
55 smart00638 LPD_N Lipoprotein N 96.2 0.16 3.5E-06 64.8 19.0 207 937-1174 346-572 (574)
56 COG5240 SEC21 Vesicle coat com 96.1 5.2 0.00011 49.1 35.8 509 720-1296 23-554 (898)
57 PF12755 Vac14_Fab1_bd: Vacuol 96.0 0.0089 1.9E-07 57.7 4.9 90 1042-1133 2-94 (97)
58 cd00020 ARM Armadillo/beta-cat 96.0 0.0083 1.8E-07 58.8 4.7 106 1027-1134 8-119 (120)
59 KOG1240 Protein kinase contain 95.9 0.16 3.4E-06 66.3 16.3 252 983-1256 459-728 (1431)
60 KOG1243 Protein kinase [Genera 95.8 0.063 1.4E-06 66.9 12.2 281 928-1303 234-521 (690)
61 PF02985 HEAT: HEAT repeat; I 95.8 0.012 2.7E-07 44.2 3.8 30 1269-1299 2-31 (31)
62 KOG1062 Vesicle coat complex A 95.8 9.3 0.0002 49.0 30.5 378 828-1296 128-543 (866)
63 PF01347 Vitellogenin_N: Lipop 95.7 0.098 2.1E-06 67.3 14.3 166 984-1175 429-617 (618)
64 KOG0212 Uncharacterized conser 95.7 1.6 3.4E-05 53.5 22.6 244 1024-1302 165-411 (675)
65 cd00020 ARM Armadillo/beta-cat 95.7 0.036 7.8E-07 54.3 7.8 111 1064-1179 7-119 (120)
66 KOG0567 HEAT repeat-containing 95.5 0.64 1.4E-05 52.1 17.3 189 1066-1296 38-248 (289)
67 PF05804 KAP: Kinesin-associat 95.5 0.44 9.5E-06 61.4 18.6 307 983-1300 287-652 (708)
68 PF04826 Arm_2: Armadillo-like 95.5 0.094 2E-06 59.6 11.4 144 986-1135 12-163 (254)
69 KOG1943 Beta-tubulin folding c 95.5 0.41 8.9E-06 62.3 18.0 256 1022-1296 337-610 (1133)
70 KOG1059 Vesicle coat complex A 95.3 3.6 7.9E-05 51.8 24.4 198 818-1093 153-365 (877)
71 COG5240 SEC21 Vesicle coat com 95.2 2.9 6.4E-05 51.2 22.4 310 961-1296 203-515 (898)
72 KOG2062 26S proteasome regulat 95.2 0.54 1.2E-05 58.8 16.8 265 958-1301 348-657 (929)
73 KOG0915 Uncharacterized conser 95.2 0.74 1.6E-05 61.8 18.9 277 981-1301 813-1114(1702)
74 KOG2259 Uncharacterized conser 95.2 0.36 7.8E-06 59.7 15.1 248 985-1290 233-509 (823)
75 KOG1248 Uncharacterized conser 95.2 18 0.00039 48.4 65.2 204 1058-1297 691-898 (1176)
76 PF05004 IFRD: Interferon-rela 95.1 1.5 3.3E-05 51.4 20.1 232 1030-1286 47-291 (309)
77 COG5096 Vesicle coat complex, 95.1 0.51 1.1E-05 60.6 17.0 189 961-1164 32-220 (757)
78 KOG1943 Beta-tubulin folding c 95.0 19 0.00041 47.8 33.8 168 1121-1298 691-882 (1133)
79 PF14225 MOR2-PAG1_C: Cell mor 94.9 2.1 4.6E-05 49.0 20.0 220 1063-1296 6-250 (262)
80 KOG0212 Uncharacterized conser 94.9 14 0.0003 45.7 28.8 372 520-1056 23-407 (675)
81 KOG2259 Uncharacterized conser 94.7 0.67 1.5E-05 57.4 15.8 291 980-1295 111-437 (823)
82 KOG1240 Protein kinase contain 94.6 1 2.2E-05 59.3 17.7 240 1003-1301 440-689 (1431)
83 KOG1020 Sister chromatid cohes 94.6 28 0.0006 47.9 35.2 467 724-1296 860-1404(1692)
84 KOG2956 CLIP-associating prote 94.5 0.54 1.2E-05 56.3 14.0 193 960-1156 299-498 (516)
85 KOG1077 Vesicle coat complex A 94.5 2.9 6.4E-05 52.4 20.3 139 992-1138 80-219 (938)
86 KOG2274 Predicted importin 9 [ 94.2 25 0.00054 45.9 35.7 60 738-798 728-787 (1005)
87 KOG1991 Nuclear transport rece 94.0 5.5 0.00012 52.0 22.3 313 963-1290 436-793 (1010)
88 PF12460 MMS19_C: RNAPII trans 94.0 20 0.00043 44.0 27.7 325 829-1177 27-391 (415)
89 KOG2956 CLIP-associating prote 94.0 1.8 3.9E-05 52.1 16.8 184 999-1192 300-490 (516)
90 KOG1058 Vesicle coat complex C 93.6 4.5 9.7E-05 51.3 19.7 123 963-1092 35-162 (948)
91 COG5064 SRP1 Karyopherin (impo 93.4 0.66 1.4E-05 53.3 11.5 295 962-1299 85-445 (526)
92 KOG4653 Uncharacterized conser 93.1 1.1 2.3E-05 57.3 13.7 169 966-1137 745-920 (982)
93 KOG1820 Microtubule-associated 93.0 0.82 1.8E-05 59.7 13.1 192 991-1191 258-455 (815)
94 KOG1820 Microtubule-associated 92.9 3.2 7E-05 54.3 18.1 185 1071-1298 260-444 (815)
95 KOG1967 DNA repair/transcripti 92.3 2.8 6.1E-05 54.1 15.9 213 958-1176 786-1020(1030)
96 KOG1517 Guanine nucleotide bin 92.3 0.67 1.5E-05 60.0 10.5 141 1040-1180 571-732 (1387)
97 COG5215 KAP95 Karyopherin (imp 92.1 39 0.00084 42.1 38.6 287 983-1279 363-691 (858)
98 KOG1060 Vesicle coat complex A 92.1 19 0.0004 46.3 22.2 269 990-1294 39-347 (968)
99 PF02985 HEAT: HEAT repeat; I 92.0 0.077 1.7E-06 40.0 1.3 28 1028-1055 2-29 (31)
100 smart00638 LPD_N Lipoprotein N 91.7 3.4 7.3E-05 52.9 16.5 143 1022-1184 393-549 (574)
101 cd00256 VATPase_H VATPase_H, r 91.7 40 0.00087 41.4 25.6 293 987-1296 102-424 (429)
102 PF01347 Vitellogenin_N: Lipop 91.5 2.2 4.8E-05 54.9 14.7 149 1022-1190 431-601 (618)
103 PF10363 DUF2435: Protein of u 91.5 0.78 1.7E-05 44.0 7.7 68 1226-1297 5-72 (92)
104 KOG1517 Guanine nucleotide bin 91.3 1.6 3.4E-05 56.8 12.2 195 1063-1298 475-672 (1387)
105 KOG4653 Uncharacterized conser 91.0 8.7 0.00019 49.6 18.0 224 1033-1300 734-967 (982)
106 KOG1061 Vesicle coat complex A 90.9 3.9 8.4E-05 52.1 15.1 163 962-1135 27-189 (734)
107 KOG1525 Sister chromatid cohes 90.7 88 0.0019 43.4 29.9 216 442-749 180-406 (1266)
108 KOG1949 Uncharacterized conser 90.3 4.9 0.00011 50.5 14.7 142 991-1135 179-331 (1005)
109 COG5218 YCG1 Chromosome conden 90.2 4.2 9.2E-05 50.0 13.8 190 982-1177 45-263 (885)
110 KOG4535 HEAT and armadillo rep 89.7 14 0.0003 44.8 17.3 208 1061-1296 387-602 (728)
111 PF04826 Arm_2: Armadillo-like 89.5 7.3 0.00016 44.5 14.7 140 987-1135 55-205 (254)
112 KOG0567 HEAT repeat-containing 89.3 1.5 3.2E-05 49.3 8.6 49 1116-1178 230-278 (289)
113 PF12830 Nipped-B_C: Sister ch 89.1 1.4 3E-05 47.9 8.3 74 1220-1300 4-78 (187)
114 KOG0803 Predicted E3 ubiquitin 88.9 8.7 0.00019 52.7 16.9 221 1066-1302 43-268 (1312)
115 KOG1061 Vesicle coat complex A 88.5 16 0.00036 46.8 17.9 149 981-1135 116-268 (734)
116 PF10363 DUF2435: Protein of u 88.2 1.8 4E-05 41.5 7.4 85 987-1075 4-88 (92)
117 COG5116 RPN2 26S proteasome re 88.0 4.2 9.1E-05 49.8 11.7 132 1113-1303 523-656 (926)
118 PF11864 DUF3384: Domain of un 87.9 51 0.0011 41.1 22.0 295 966-1305 8-343 (464)
119 PF05918 API5: Apoptosis inhib 87.9 72 0.0016 40.4 22.8 126 998-1135 34-163 (556)
120 KOG1078 Vesicle coat complex C 87.7 1E+02 0.0022 40.1 35.3 214 1004-1235 226-440 (865)
121 KOG0414 Chromosome condensatio 87.6 6.5 0.00014 52.3 13.9 187 961-1165 893-1085(1251)
122 KOG1058 Vesicle coat complex C 87.6 28 0.00062 44.5 18.7 267 983-1256 96-428 (948)
123 KOG2025 Chromosome condensatio 87.0 13 0.00027 47.2 15.2 194 983-1184 82-299 (892)
124 PF13251 DUF4042: Domain of un 87.0 12 0.00026 40.5 13.6 162 1121-1296 1-173 (182)
125 PF12719 Cnd3: Nuclear condens 86.9 33 0.00073 40.0 18.6 110 983-1095 23-145 (298)
126 PF08064 UME: UME (NUC010) dom 86.7 1.1 2.3E-05 44.3 5.1 87 1028-1116 13-106 (107)
127 smart00802 UME Domain in UVSB 86.5 1.2 2.6E-05 43.9 5.2 88 1027-1116 12-106 (107)
128 PF14500 MMS19_N: Dos2-interac 86.4 11 0.00024 43.2 13.8 226 1030-1296 3-236 (262)
129 PF14500 MMS19_N: Dos2-interac 86.2 7.3 0.00016 44.7 12.3 198 989-1192 2-216 (262)
130 KOG4224 Armadillo repeat prote 86.0 4.6 9.9E-05 47.2 10.2 127 1038-1178 179-319 (550)
131 PF08064 UME: UME (NUC010) dom 85.4 2.8 6.1E-05 41.3 7.3 77 1078-1157 29-105 (107)
132 PF08167 RIX1: rRNA processing 85.0 4.5 9.7E-05 43.1 9.2 118 982-1105 21-154 (165)
133 KOG1967 DNA repair/transcripti 84.7 3.1 6.7E-05 53.8 8.8 129 961-1089 883-1020(1030)
134 KOG0414 Chromosome condensatio 84.6 24 0.00051 47.4 16.7 138 1113-1284 319-460 (1251)
135 KOG1293 Proteins containing ar 84.5 5.9 0.00013 49.7 10.9 141 1120-1296 391-532 (678)
136 PF14868 DUF4487: Domain of un 84.1 84 0.0018 40.0 20.9 261 1029-1301 269-556 (559)
137 KOG1243 Protein kinase [Genera 84.0 2 4.4E-05 54.1 6.7 191 983-1184 327-519 (690)
138 KOG2973 Uncharacterized conser 82.0 25 0.00055 40.7 13.7 61 1030-1092 7-70 (353)
139 COG5231 VMA13 Vacuolar H+-ATPa 81.6 27 0.00059 40.5 13.8 72 1225-1298 357-429 (432)
140 COG5116 RPN2 26S proteasome re 81.4 6.8 0.00015 48.1 9.4 143 1073-1274 525-669 (926)
141 KOG0946 ER-Golgi vesicle-tethe 79.5 2.1E+02 0.0046 37.4 24.6 109 718-852 121-243 (970)
142 KOG1525 Sister chromatid cohes 78.6 1.6E+02 0.0035 41.0 21.9 292 932-1296 21-328 (1266)
143 COG5098 Chromosome condensatio 77.7 14 0.00031 46.5 10.7 130 967-1096 280-418 (1128)
144 PF03224 V-ATPase_H_N: V-ATPas 77.0 58 0.0013 38.3 15.7 161 1065-1239 106-274 (312)
145 KOG2160 Armadillo/beta-catenin 76.1 46 0.001 39.4 14.0 179 997-1181 94-283 (342)
146 PF12460 MMS19_C: RNAPII trans 76.1 2E+02 0.0043 35.3 30.7 132 962-1095 247-396 (415)
147 KOG2062 26S proteasome regulat 74.6 3.5 7.6E-05 52.0 4.6 63 1224-1296 554-617 (929)
148 PF12074 DUF3554: Domain of un 74.5 36 0.00077 40.5 13.2 186 983-1179 19-234 (339)
149 PF08506 Cse1: Cse1; InterPro 74.3 68 0.0015 38.8 15.4 52 1235-1292 319-370 (370)
150 COG5064 SRP1 Karyopherin (impo 74.2 18 0.00039 42.1 9.7 213 1044-1295 133-354 (526)
151 PF14664 RICTOR_N: Rapamycin-i 73.0 1.1E+02 0.0024 37.1 16.7 145 1025-1177 24-173 (371)
152 COG5218 YCG1 Chromosome conden 72.9 12 0.00026 46.3 8.4 87 1206-1298 70-162 (885)
153 PF04118 Dopey_N: Dopey, N-ter 72.3 40 0.00087 39.6 12.5 168 1080-1291 71-248 (307)
154 PF13251 DUF4042: Domain of un 72.3 8.9 0.00019 41.5 6.6 70 1067-1136 104-175 (182)
155 PF10274 ParcG: Parkin co-regu 71.6 22 0.00049 38.4 9.3 73 1063-1135 37-109 (183)
156 KOG2137 Protein kinase [Signal 71.4 29 0.00063 44.4 11.5 178 984-1172 347-529 (700)
157 PF00514 Arm: Armadillo/beta-c 71.2 5.1 0.00011 31.9 3.4 29 1267-1296 12-40 (41)
158 KOG2973 Uncharacterized conser 70.8 8.6 0.00019 44.4 6.2 65 1226-1296 5-70 (353)
159 smart00802 UME Domain in UVSB 69.4 15 0.00033 36.3 6.9 74 1080-1156 31-104 (107)
160 KOG2122 Beta-catenin-binding p 69.0 1.1E+02 0.0024 42.3 16.1 212 877-1095 313-603 (2195)
161 KOG2022 Nuclear transport rece 68.5 3.7E+02 0.008 35.8 20.2 329 959-1294 481-915 (982)
162 KOG4535 HEAT and armadillo rep 67.5 12 0.00026 45.4 6.7 119 1030-1148 395-526 (728)
163 KOG2160 Armadillo/beta-catenin 67.4 12 0.00026 44.1 6.7 69 1228-1297 128-196 (342)
164 PF08569 Mo25: Mo25-like; Int 66.8 1.9E+02 0.0042 34.5 16.7 174 1116-1296 86-282 (335)
165 KOG3678 SARM protein (with ste 65.8 1.1E+02 0.0023 37.3 13.9 208 1079-1298 197-453 (832)
166 KOG1949 Uncharacterized conser 65.2 13 0.00028 46.9 6.6 106 984-1092 218-330 (1005)
167 PF13001 Ecm29: Proteasome sta 65.1 57 0.0012 41.2 12.6 157 1064-1256 319-491 (501)
168 PF08167 RIX1: rRNA processing 64.5 26 0.00056 37.3 8.2 81 1219-1300 20-100 (165)
169 PF05804 KAP: Kinesin-associat 64.1 20 0.00044 46.6 8.5 118 1039-1164 263-385 (708)
170 PF12726 SEN1_N: SEN1 N termin 63.2 4.8E+02 0.011 34.6 29.3 118 1058-1180 435-553 (727)
171 cd06561 AlkD_like A new struct 62.1 29 0.00062 37.6 8.2 84 1206-1298 88-171 (197)
172 PF11698 V-ATPase_H_C: V-ATPas 60.9 19 0.00041 36.3 5.8 80 1217-1298 36-116 (119)
173 PF10274 ParcG: Parkin co-regu 60.9 36 0.00079 36.9 8.3 88 1025-1112 37-130 (183)
174 KOG2933 Uncharacterized conser 56.5 48 0.001 38.6 8.7 179 957-1184 97-281 (334)
175 KOG2149 Uncharacterized conser 54.6 53 0.0012 39.5 9.0 110 1028-1137 60-172 (393)
176 PLN03076 ARF guanine nucleotid 53.5 7E+02 0.015 36.6 20.9 323 407-768 1149-1509(1780)
177 PF12765 Cohesin_HEAT: HEAT re 53.1 15 0.00033 29.8 3.1 27 1264-1291 15-41 (42)
178 PLN03076 ARF guanine nucleotid 53.1 3.4E+02 0.0073 39.6 17.8 137 1025-1161 1223-1403(1780)
179 PF10521 DUF2454: Protein of u 53.0 2.3E+02 0.005 32.9 14.1 162 1094-1282 107-279 (282)
180 KOG0392 SNF2 family DNA-depend 52.6 97 0.0021 42.3 11.5 110 1026-1135 816-925 (1549)
181 PF13001 Ecm29: Proteasome sta 52.4 2.8E+02 0.006 35.1 15.6 146 1151-1302 237-408 (501)
182 COG5098 Chromosome condensatio 52.0 46 0.001 42.2 8.2 105 1028-1135 301-415 (1128)
183 PF03130 HEAT_PBS: PBS lyase H 50.8 11 0.00024 27.4 1.8 27 1042-1075 1-27 (27)
184 KOG0413 Uncharacterized conser 50.0 52 0.0011 43.3 8.4 128 1021-1165 963-1096(1529)
185 PF14664 RICTOR_N: Rapamycin-i 48.0 3.3E+02 0.0072 33.0 14.7 34 1268-1302 335-369 (371)
186 KOG2022 Nuclear transport rece 47.4 8.5E+02 0.018 32.6 28.1 395 273-764 458-882 (982)
187 PF00514 Arm: Armadillo/beta-c 46.8 26 0.00056 27.9 3.5 29 1151-1179 12-40 (41)
188 PF12765 Cohesin_HEAT: HEAT re 46.8 22 0.00048 28.9 3.1 25 1025-1049 17-41 (42)
189 PF08713 DNA_alkylation: DNA a 44.9 2.6E+02 0.0055 30.5 12.3 83 1207-1298 103-185 (213)
190 PF11935 DUF3453: Domain of un 44.7 3.5E+02 0.0076 30.6 13.5 115 1035-1179 2-144 (239)
191 KOG4413 26S proteasome regulat 43.0 6.3E+02 0.014 29.9 20.8 266 983-1256 34-336 (524)
192 KOG2137 Protein kinase [Signal 42.9 1.2E+02 0.0026 39.2 9.9 111 1059-1178 384-494 (700)
193 KOG1077 Vesicle coat complex A 42.7 9.1E+02 0.02 31.6 26.8 217 1063-1305 208-442 (938)
194 KOG2274 Predicted importin 9 [ 42.5 1E+03 0.022 32.1 42.1 138 1119-1286 630-769 (1005)
195 KOG1078 Vesicle coat complex C 42.4 9.5E+02 0.021 31.8 21.0 148 961-1135 13-164 (865)
196 PF11865 DUF3385: Domain of un 42.0 1.3E+02 0.0028 31.9 8.9 30 1022-1054 10-39 (160)
197 COG5234 CIN1 Beta-tubulin fold 41.3 2.2E+02 0.0047 36.8 11.5 120 1057-1178 239-414 (993)
198 PF10521 DUF2454: Protein of u 40.6 1.6E+02 0.0035 34.1 10.2 132 1052-1183 107-256 (282)
199 PF12830 Nipped-B_C: Sister ch 40.3 3.9E+02 0.0085 29.0 12.5 117 1112-1237 14-143 (187)
200 cd03572 ENTH_epsin_related ENT 40.0 1.9E+02 0.004 29.5 9.1 90 1207-1298 22-120 (122)
201 COG5110 RPN1 26S proteasome re 39.8 8.9E+02 0.019 30.7 17.3 75 1026-1104 450-527 (881)
202 COG5101 CRM1 Importin beta-rel 39.3 6.3E+02 0.014 32.5 14.8 152 245-429 487-653 (1053)
203 KOG0392 SNF2 family DNA-depend 38.4 2.6E+02 0.0056 38.6 12.1 162 1022-1183 204-388 (1549)
204 KOG4524 Uncharacterized conser 37.8 1.1E+02 0.0023 40.8 8.6 136 1143-1288 581-759 (1014)
205 PF14222 MOR2-PAG1_N: Cell mor 37.4 1E+03 0.022 30.6 19.3 58 1122-1182 444-502 (552)
206 KOG1020 Sister chromatid cohes 37.4 1.1E+03 0.023 33.8 17.6 106 1025-1135 815-921 (1692)
207 PF11698 V-ATPase_H_C: V-ATPas 37.3 47 0.001 33.5 4.3 28 1066-1093 88-115 (119)
208 COG5234 CIN1 Beta-tubulin fold 35.7 8.5E+02 0.018 31.8 15.3 78 1232-1321 699-783 (993)
209 PRK14707 hypothetical protein; 35.6 1.8E+03 0.039 33.0 27.9 334 902-1293 789-1155(2710)
210 KOG2933 Uncharacterized conser 35.4 1.5E+02 0.0032 34.8 8.4 31 1066-1096 207-237 (334)
211 smart00288 VHS Domain present 35.0 2.4E+02 0.0053 28.8 9.4 88 1207-1296 21-110 (133)
212 PF00790 VHS: VHS domain; Int 34.9 2.6E+02 0.0056 28.8 9.7 92 1202-1296 22-117 (140)
213 KOG4500 Rho/Rac GTPase guanine 34.5 2.5E+02 0.0054 34.3 10.2 109 987-1095 316-433 (604)
214 smart00567 EZ_HEAT E-Z type HE 34.4 37 0.00081 25.0 2.4 28 1041-1075 2-29 (30)
215 KOG1822 Uncharacterized conser 33.6 8.9E+02 0.019 35.3 16.3 221 930-1153 849-1107(2067)
216 cd03561 VHS VHS domain family; 33.4 3.6E+02 0.0079 27.5 10.3 89 1206-1296 20-111 (133)
217 KOG2005 26S proteasome regulat 33.2 6.6E+02 0.014 32.6 13.8 278 981-1297 410-704 (878)
218 COG5209 RCD1 Uncharacterized p 33.1 2.6E+02 0.0056 31.3 9.4 149 1073-1242 109-274 (315)
219 PF14961 BROMI: Broad-minded p 32.7 2.1E+02 0.0045 39.3 10.1 197 1029-1237 164-385 (1296)
220 PF11864 DUF3384: Domain of un 32.1 1.1E+03 0.024 29.5 22.4 94 704-803 161-256 (464)
221 PF05536 Neurochondrin: Neuroc 31.9 1.2E+03 0.026 29.9 27.0 263 1010-1305 123-415 (543)
222 PRK14707 hypothetical protein; 31.7 2E+03 0.044 32.5 28.6 336 929-1314 894-1263(2710)
223 PF12530 DUF3730: Protein of u 31.2 8E+02 0.017 27.6 16.9 153 963-1119 53-216 (234)
224 KOG2759 Vacuolar H+-ATPase V1 30.6 1.1E+03 0.024 29.0 20.1 87 1204-1296 350-437 (442)
225 cd05394 RasGAP_RASA2 RASA2 (or 30.6 9.8E+02 0.021 28.4 14.3 206 1003-1229 34-267 (313)
226 KOG0946 ER-Golgi vesicle-tethe 29.9 1.5E+03 0.032 30.3 31.7 76 759-853 20-95 (970)
227 PF12074 DUF3554: Domain of un 29.9 8.3E+02 0.018 28.9 14.2 86 1043-1135 4-90 (339)
228 PF14225 MOR2-PAG1_C: Cell mor 29.8 4.3E+02 0.0094 30.5 11.2 71 984-1054 5-77 (262)
229 cd03568 VHS_STAM VHS domain fa 29.7 3.6E+02 0.0077 28.2 9.6 88 1206-1295 20-108 (144)
230 COG5215 KAP95 Karyopherin (imp 29.6 1.3E+03 0.028 29.6 49.5 392 717-1145 367-820 (858)
231 smart00185 ARM Armadillo/beta- 29.1 70 0.0015 24.7 3.4 28 1268-1296 13-40 (41)
232 PF08713 DNA_alkylation: DNA a 28.9 5.5E+02 0.012 27.9 11.7 65 1027-1094 121-185 (213)
233 KOG2759 Vacuolar H+-ATPase V1 28.9 2E+02 0.0043 35.1 8.3 83 958-1048 342-431 (442)
234 PF05536 Neurochondrin: Neuroc 28.2 1.4E+03 0.03 29.3 16.9 140 986-1136 5-169 (543)
235 cd03568 VHS_STAM VHS domain fa 27.3 5.7E+02 0.012 26.7 10.6 88 703-793 23-112 (144)
236 PF14750 INTS2: Integrator com 25.9 2E+03 0.042 30.4 18.4 120 1119-1249 325-463 (1049)
237 PF12530 DUF3730: Protein of u 25.6 9.9E+02 0.021 26.8 18.7 193 961-1162 14-217 (234)
238 KOG0413 Uncharacterized conser 25.6 5.9E+02 0.013 34.4 11.9 159 1117-1296 483-644 (1529)
239 PF08569 Mo25: Mo25-like; Int 25.6 1.2E+03 0.026 27.9 14.2 199 958-1171 54-274 (335)
240 PRK09169 hypothetical protein; 25.3 2.6E+03 0.056 31.7 37.8 239 927-1184 514-782 (2316)
241 PF11707 Npa1: Ribosome 60S bi 24.8 1.2E+03 0.026 27.6 16.0 113 721-850 58-187 (330)
242 KOG1993 Nuclear transport rece 24.7 3.4E+02 0.0074 35.7 9.7 56 1237-1297 500-556 (978)
243 KOG1293 Proteins containing ar 24.4 1E+03 0.023 30.8 13.7 132 1069-1229 424-557 (678)
244 PF10304 DUF2411: Domain of un 23.6 1.5E+02 0.0032 23.5 4.1 31 1266-1296 4-34 (36)
245 cd03569 VHS_Hrs_Vps27p VHS dom 23.5 7E+02 0.015 25.9 10.4 89 703-794 27-117 (142)
246 KOG4500 Rho/Rac GTPase guanine 23.3 1.5E+03 0.032 28.1 18.3 161 1107-1301 316-479 (604)
247 KOG0168 Putative ubiquitin fus 23.2 9.2E+02 0.02 32.3 13.0 112 1066-1180 169-284 (1051)
248 PF07539 DRIM: Down-regulated 23.1 1.1E+02 0.0023 31.9 4.3 40 1025-1064 16-55 (141)
249 KOG0168 Putative ubiquitin fus 23.0 7.9E+02 0.017 32.8 12.4 190 993-1192 174-379 (1051)
250 PF12726 SEN1_N: SEN1 N termin 22.9 1.9E+03 0.041 29.1 34.8 303 928-1287 229-576 (727)
251 KOG4199 Uncharacterized conser 22.8 1.4E+03 0.03 27.5 21.3 158 1114-1307 291-455 (461)
252 PF08767 CRM1_C: CRM1 C termin 22.6 4.5E+02 0.0097 31.2 10.0 72 1022-1093 161-244 (319)
253 PF14228 MOR2-PAG1_mid: Cell m 22.2 2.3E+03 0.05 30.0 21.8 295 985-1298 195-573 (1120)
254 KOG2122 Beta-catenin-binding p 21.2 3.8E+02 0.0082 37.7 9.4 30 622-651 481-510 (2195)
255 KOG2149 Uncharacterized conser 20.8 2.3E+02 0.0049 34.4 6.8 68 1067-1135 61-128 (393)
256 KOG2090 Metalloendopeptidase f 20.4 2.3E+02 0.0051 35.9 7.0 79 633-723 104-186 (704)
257 cd03569 VHS_Hrs_Vps27p VHS dom 20.2 5.6E+02 0.012 26.6 8.9 88 1208-1296 26-113 (142)
258 PRK09169 hypothetical protein; 20.1 3.2E+03 0.069 30.8 27.3 314 928-1292 179-524 (2316)
No 1
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=3.8e-55 Score=498.83 Aligned_cols=490 Identities=20% Similarity=0.200 Sum_probs=446.3
Q ss_pred HHHHHHHHHHhhccCchhHHHHHHhhhcccchhhhhccccCCCCchh----HHHHhhcCcccHHHHHHHHHHHHccCCCc
Q 000730 780 LETLGAISCLAENTNSKIVFNEVLATAGKDIVTKDISRLRGGWPMQD----AFHAFSQHAVLSFLFLEHLISALNQTPFV 855 (1326)
Q Consensus 780 ~~~l~ai~~La~~h~~~vV~~~Ll~~~~~~~~~~~~~~L~~~lP~d~----~W~aLa~d~~l~~~vL~~LL~~L~~~p~~ 855 (1326)
+....++.++...|.-.++ .+. +.+++|.+. .|..+.-.+....+++++++..+.. ..
T Consensus 12 qa~qdsv~l~h~~h~~a~~-~~~---------------~s~~l~~~s~i~a~~~~~~~pl~~rdq~l~~i~~~mg~-~~- 73 (533)
T KOG2032|consen 12 EARQDSVVLLHVRHQTAKQ-AVI---------------TAIDLLGRSVINAAETGATFPLKRRDQMLDYILTLMGR-EG- 73 (533)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHH---------------HcccccchHHHHHHHhhcCCchhhHHHHHHHHHHhhch-hh-
Confidence 4445566677777655444 333 578899887 7999999999999999999988776 11
Q ss_pred cCCCccCCCCCCCCCCCccchHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHHHHHhhhcccCCCCC----------
Q 000730 856 KGDMEKGDYSSHSADTWIDDDILQAAILALTAFFRGGGKVGKKAVEKSYAPVLAALTLQLGSCHGLASSG---------- 925 (1326)
Q Consensus 856 ~e~~~~~~~~~~~~~~~~~~~~~laA~~aL~Ell~~~~~~~~~av~~~fp~Lf~aLL~ql~~~~~~~~~~---------- 925 (1326)
.++++..+...++++.++-||++++|+..+. +.+..|-..|||||.-+|+..+++.|+..+.
T Consensus 74 ------~a~sl~~v~~~~a~~~~~~~t~vl~e~~lti--~~g~~v~~lypqlf~llLllvscvlg~k~p~~lqa~~r~~~ 145 (533)
T KOG2032|consen 74 ------FAESLLEVLHTQALALNACTTLVLVEPKLTI--ETGNRVMKLYPQLFSLLLLLVSCVLGLKSPDSLQALSRLED 145 (533)
T ss_pred ------hhhhhcchhhhHHHHHHHHHHHHHHHHhhhh--hcCchHHHhhHHHHHHHHHHHHHHhhccCcccHHHHHHHHh
Confidence 2223444555678899999999999999998 8889999999999999999999999986551
Q ss_pred -------CCChHHHHHHHHHHHHHhhcchHHHHHHHhcCC-CC---ChhhHHHHHHHHHHHHhhcCchhHHHHHHHHhhh
Q 000730 926 -------QHEPLRAILTSFQAFCECVGDLEMRKILARDGE-QN---DKEKWINLIGDVAGCVSIKRPKEVQTICLILTKS 994 (1326)
Q Consensus 926 -------~~~P~~~aleAlk~ll~~~g~~~~~~~L~~~g~-W~---~~e~~~~gV~lLAr~m~~~~~~~~~~i~~~L~~~ 994 (1326)
.+.||+.+..+++.+...++.+.+.+..+..++ |. ++..|+.|++.++|.|..+.++.++.|+.++...
T Consensus 146 ~~al~~~~~~pc~~~tatl~cl~lqsa~e~~~~~sde~~~~w~qls~~~~h~~g~trlqr~m~~~~~~~~~~il~q~~ss 225 (533)
T KOG2032|consen 146 VIALLKSLVAPCHSCTATLCCLILQSAEEAIQAVSDEVSRRWSQLSDNDIHRVGLTRLQRFMACVQDLEMGKILAQLLSS 225 (533)
T ss_pred HHHHHHhhhhHHHHhHHHHHHHHHHHhHHHHHHhhhcccchhhhcccCcccHHHHHHHHHHHHhhCCccHHHHHhhcccc
Confidence 678999999999999999999999999998876 98 8999999999999999999999999999999999
Q ss_pred hccccccchHHHHHHHHHhhhcCCc-hhhHHHHHHHHHHhhcCCCChhHHHHHhhhccCCcch---hhhhhHHHHHHHHH
Q 000730 995 INRQQRFQREAAAAALSEFVRYSGG-FDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI---HIHQYATQVLSVIL 1070 (1326)
Q Consensus 995 L~s~~~~~Ri~a~aflsELl~~~~~-~~~l~~~~i~~L~~~l~D~~~~VR~lsLrGLgnl~~~---~v~~~~~~lL~all 1070 (1326)
..|..+.+|++.+|||+|+.+.+.. ...++.+++..|.+..+|||..+|.+|+|||||++.+ |++.|.++++.+++
T Consensus 226 ~ts~~~~~ritd~Af~ael~~~~~l~~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii 305 (533)
T KOG2032|consen 226 ITSEKENGRITDIAFFAELKRPKELDKTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAII 305 (533)
T ss_pred cchhcccchHHHHHHHHHHhCcccccccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHH
Confidence 9999999999999999999998755 4577888999999999999999999999999999754 99999999999999
Q ss_pred hhccCCC-hhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCcCCChHHHHHHHHHHHHhhhcCCCcchHHHHHHH
Q 000730 1071 ALLDDLD-ESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQI 1149 (1326)
Q Consensus 1071 ~~L~d~d-~~V~leAm~~L~~lL~~l~~~~~~~~l~~l~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv 1149 (1326)
.||+|.+ ++|++|||.+|.++++.....++++++++++.|+|+||++|++++|.+||.+||+|+++++|.+++.|.|||
T Consensus 306 ~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v 385 (533)
T KOG2032|consen 306 RGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQV 385 (533)
T ss_pred HHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHH
Confidence 9999965 789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhHHHHhccCCChhHHHHHHHHHHhhchhhhh-hhhhhhccccCCCCCCCChHHHHHHHHHHHHHhCcchHHHHHHH
Q 000730 1150 HAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEI-GVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGS 1228 (1326)
Q Consensus 1150 ~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL~~-~l~~lf~~~~~~~~~~l~~~~f~~~i~k~L~~~~~~~~~~~l~~ 1228 (1326)
.+.+.||++||+|++|.|+.|||.+++.|.+.+.. .+..+|+++. ++....+.+|++..|+.|...+||....++..
T Consensus 386 ~k~~~~lllhl~d~~p~va~ACr~~~~~c~p~l~rke~~~~~q~~l--d~~~~~~q~Fyn~~c~~L~~i~~d~l~~~~t~ 463 (533)
T KOG2032|consen 386 KKRLAPLLLHLQDPNPYVARACRSELRTCYPNLVRKELYHLFQESL--DTDMARFQAFYNQWCIQLNHIHPDILMLLLTE 463 (533)
T ss_pred HhccccceeeeCCCChHHHHHHHHHHHhcCchhHHHHHHHHHhhhh--HHhHHHHHHHHHHHHHHHhhhCHHHHHHHHHh
Confidence 99999999999999999999999999999999999 8999999874 44445899999999999999999999999999
Q ss_pred HHHhhcCCChhHHHHHHHHHhhhhccCchhhhhhccHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHH
Q 000730 1229 TIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLLKS 1298 (1326)
Q Consensus 1229 ~l~y~kS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k~ 1298 (1326)
...||+|.|+.+|.+|+.+.|...-++.++.+...|.+++.++|.. |.+||.|.|+..|.+|++.+.+.
T Consensus 464 ~~~~f~sswe~vr~aavl~t~~~vd~l~~~~c~~~d~~qL~~~ls~-l~~dp~pev~~~a~~al~~l~~~ 532 (533)
T KOG2032|consen 464 DQHIFSSSWEQVREAAVLKTTRSVDSLVRAACSSADGLQLRSSLST-LWRDPRPEVTDSARKALDLLSVK 532 (533)
T ss_pred chhheecchHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHH-HccCCCchhHHHHHHHhhhHhhc
Confidence 9999999999999999999999999999999999999999999999 89999999999999999998753
No 2
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.61 E-value=6.2e-13 Score=157.20 Aligned_cols=569 Identities=15% Similarity=0.162 Sum_probs=369.8
Q ss_pred hhhhhHHHHhhccccCCChhHHHHHHHHHHHHHHHHhhCCCCCCC--------CCCcc-hhhhhhhhhh-cHHHHHHhcc
Q 000730 622 LCLGNRVIMYLPRCADTDSEVRKISAQILDQLFSISLSLPRPVGS--------SSGID-LELSYGALSS-LEDVIAILRS 691 (1326)
Q Consensus 622 ~~lG~Lvg~l~prC~D~~~~iR~~A~~~i~~Ll~I~l~~~~~~~~--------~~~~~-~~~~~~~l~~-l~~~~~~l~~ 691 (1326)
..+|+.-....+.-+|+++-||-...-.|..+...-.++.|+++. +.+++ -|++.++|++ ++|..+.+++
T Consensus 86 ~~~~yiKs~~l~~lgd~~~lIr~tvGivITTI~s~~~~~~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds 165 (885)
T KOG2023|consen 86 EVLDYIKSECLHGLGDASPLIRATVGIVITTIASTGGLQHWPELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDS 165 (885)
T ss_pred HHHHHHHHHHHhhccCchHHHHhhhhheeeeeecccccccchhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhh
Confidence 578899999999999999999999988888777665555554322 33433 4566788888 7888888888
Q ss_pred CCCCChhHHHH-H---------------HHHHHHccCC------hhHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHhh
Q 000730 692 DASIDPSEVFN-R---------------IVSSVCILLT------KDELVATLHSCTTAICDRTKQSAEGAIQAVVEFVTK 749 (1326)
Q Consensus 692 ~~~~~~~~~~~-~---------------i~~~i~~~L~------~~el~~ll~~ll~~L~d~~~~~~~~A~~~L~~~l~~ 749 (1326)
+....|-+++- + -...+.+++. ...+..|+.+++.--+|.++.+....|..+..+++.
T Consensus 166 ~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llev 245 (885)
T KOG2023|consen 166 DVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEV 245 (885)
T ss_pred hcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHh
Confidence 87777755541 1 1122334443 345778999999999999999999999999999999
Q ss_pred hcccccccchhhHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccCchhHHHHHHhhhcccchhhhhccccCCCCchhHHH
Q 000730 750 RGNELSETDVSRTTQSLLSAAVHITDKHLRLETLGAISCLAENTNSKIVFNEVLATAGKDIVTKDISRLRGGWPMQDAFH 829 (1326)
Q Consensus 750 rg~~L~e~~V~~I~~~I~~~l~~i~~~~~r~~~l~ai~~La~~h~~~vV~~~Ll~~~~~~~~~~~~~~L~~~lP~d~~W~ 829 (1326)
|..++ +|.+-+.+.+-+...+. |-++|- +..++.|.
T Consensus 246 r~dkl----~phl~~IveyML~~tqd-----------------~dE~VA-----------------------LEACEFwl 281 (885)
T KOG2023|consen 246 RPDKL----VPHLDNIVEYMLQRTQD-----------------VDENVA-----------------------LEACEFWL 281 (885)
T ss_pred cHHhc----ccchHHHHHHHHHHccC-----------------cchhHH-----------------------HHHHHHHH
Confidence 99999 66654444443333332 223322 34567999
Q ss_pred HhhcCc---ccHHHHHHHHHHHHccCCCccCCCc---cCCCCCCCCCCCccchHHHHHHHHHHHHHhcCCcchHHHHHHh
Q 000730 830 AFSQHA---VLSFLFLEHLISALNQTPFVKGDME---KGDYSSHSADTWIDDDILQAAILALTAFFRGGGKVGKKAVEKS 903 (1326)
Q Consensus 830 aLa~d~---~l~~~vL~~LL~~L~~~p~~~e~~~---~~~~~~~~~~~~~~~~~~laA~~aL~Ell~~~~~~~~~av~~~ 903 (1326)
++|..| ....+.|+.|..+|-+.+.|.|++. +.+..+...+++..+ ++.+
T Consensus 282 a~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeD------------------------IkPR 337 (885)
T KOG2023|consen 282 ALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREED------------------------IKPR 337 (885)
T ss_pred HHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhh------------------------ccch
Confidence 999976 4556677888999999999998542 122233334444433 4444
Q ss_pred hHHHHHHHHHHhhhcccCCCC-------------C------CCChHH-HHHHHHHHHHHhhcchHHHHHHHh---cCCCC
Q 000730 904 YAPVLAALTLQLGSCHGLASS-------------G------QHEPLR-AILTSFQAFCECVGDLEMRKILAR---DGEQN 960 (1326)
Q Consensus 904 fp~Lf~aLL~ql~~~~~~~~~-------------~------~~~P~~-~aleAlk~ll~~~g~~~~~~~L~~---~g~W~ 960 (1326)
|.. +-.+|.... + +++.|| .+++.|-.++.---....+-.++. ...|.
T Consensus 338 fhk---------sk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~elL~~l~PlLk~~L~~~~W~ 408 (885)
T KOG2023|consen 338 FHK---------SKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDELLPILLPLLKEHLSSEEWK 408 (885)
T ss_pred hhh---------chhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhHHHHHHHHHHHHHHHcCcchhh
Confidence 444 334443210 0 566777 577877766644333334444554 25799
Q ss_pred ChhhHHHHHHHHHHHHhhcCchhHHHHHHHHhhhhccccccchHHHHHHHHHhhhc--CCchhhHHHHHHHHHHhhcCCC
Q 000730 961 DKEKWINLIGDVAGCVSIKRPKEVQTICLILTKSINRQQRFQREAAAAALSEFVRY--SGGFDSLLEQMVEALCRHVSDE 1038 (1326)
Q Consensus 961 ~~e~~~~gV~lLAr~m~~~~~~~~~~i~~~L~~~L~s~~~~~Ri~a~aflsELl~~--~~~~~~l~~~~i~~L~~~l~D~ 1038 (1326)
-.|.-.-+++.+|.++.++--|+++.++-++++.|++.....|.++++.++++-+. +......++.++..|.+++-|.
T Consensus 409 vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~llD~ 488 (885)
T KOG2023|consen 409 VREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRLLDS 488 (885)
T ss_pred hhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHHHHhcc
Confidence 88888999999999999999999999999999999999999999999999998764 2224467788999999999999
Q ss_pred ChhHHHHHhhhccCCcch---hhhhhHHHHHHHHHhhccCCCh---hHHHHHHHHHHHHh-ccCCcCC-cc---------
Q 000730 1039 SPTVRGLCLRGLVQIPSI---HIHQYATQVLSVILALLDDLDE---SVQLTAVSCLLTIL-KSSSKDA-VE--------- 1101 (1326)
Q Consensus 1039 ~~~VR~lsLrGLgnl~~~---~v~~~~~~lL~all~~L~d~d~---~V~leAm~~L~~lL-~~l~~~~-~~--------- 1101 (1326)
|..|+..|.-+++.+-.. +.-.|...+|..++..+..+.. .|.+.|+.+|++=. +.+.+.. +.
T Consensus 489 NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~~af~kYQ~KNLlILYDAIgtlAdsvg~~Ln~~~YiqiLmPPLi~K 568 (885)
T KOG2023|consen 489 NKKVQEAACSAFATLEEEAGEELVPYLEYILDQLVFAFGKYQKKNLLILYDAIGTLADSVGHALNKPAYIQILMPPLIEK 568 (885)
T ss_pred cHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhcceehHHHHHHHHHHHHHHhcCcHHHHHHhccHHHHH
Confidence 999999999999877543 5666888888888888876543 38888998888654 2333222 11
Q ss_pred ------------h---hHHhHHhhhcCcCcCCChHHHHHHHHHHHHh----hhc--------------------------
Q 000730 1102 ------------P---ILLNLSVRLRNLQVSMNVKMRRNAFAAFGAL----SNF-------------------------- 1136 (1326)
Q Consensus 1102 ------------~---~l~~l~~~lrpffede~~~vR~aAi~LfG~L----~~~-------------------------- 1136 (1326)
| .+-.|+..++.=|---.+.|=.-+|++..+- .+.
T Consensus 569 W~~lsd~DKdLfPLLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdkdfiI~sLDL~SGLae 648 (885)
T KOG2023|consen 569 WELLSDSDKDLFPLLECLSSIASALGVGFLPYAQPVYQRCFRILQKTLQLLAKVQQDPTVEAPDKDFIIVSLDLLSGLAE 648 (885)
T ss_pred HHhcCcccchHHHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHhccCCccccCCCcceEEEeHHHHhHHHH
Confidence 1 1123344444444444455544555554421 111
Q ss_pred CCCcchHHHHHHHHhhhh-HHHHhccCCChhHHHHHHHHHHhhchhhhhhhhhhhccccCCCCCCCChHHHHHHHHHHHH
Q 000730 1137 GVGSQREAFLEQIHAMLP-RLILHIYDDDLSVRQACRNTLKQVAPFMEIGVYGIFNSHCFNSDHRSDYETFVRDLTRQFV 1215 (1326)
Q Consensus 1137 ~~~~~~~~~~eQv~~~Lv-pLLlHL~D~~~~V~~ack~tL~~~a~lL~~~l~~lf~~~~~~~~~~l~~~~f~~~i~k~L~ 1215 (1326)
|-|+..+++.-| +++. -++..++|+-|+||+.|=.-|+..+. +-|.. ... +..++...|.
T Consensus 649 gLg~~ie~Lva~--snl~~lll~C~~D~~peVRQS~FALLGDltk-------~c~~~--v~p--------~~~~fl~~lg 709 (885)
T KOG2023|consen 649 GLGSHIEPLVAQ--SNLLDLLLQCLQDEVPEVRQSAFALLGDLTK-------ACFEH--VIP--------NLADFLPILG 709 (885)
T ss_pred HhhhchHHHhhh--ccHHHHHHHHhccCChHHHHHHHHHHHHHHH-------HHHHh--ccc--------hHHHHHHHHh
Confidence 111222222222 2233 34567899999999988433333222 11111 000 1122223333
Q ss_pred HhCcchHHHHHHHHHHhhcCCChhHHHHHHHHHhhhhccCchhhhhhccHHHHHHHHHHHh-ccCCChhHHHHHHHHHHH
Q 000730 1216 QHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKL-SQSADAIVRATCSSSLGW 1294 (1326)
Q Consensus 1216 ~~~~~~~~~~l~~~l~y~kS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~L-l~Dpdp~VR~~Aa~aL~~ 1294 (1326)
.-+....-.+--||+|-+|-+.-.+..+.. .++.-++..|...+ .+--+..|-...|.|+|+
T Consensus 710 ---------------~Nl~~~~isv~nNA~WAiGeia~k~g~~~~--~~v~~vl~~L~~iin~~~~~~tllENtAITIGr 772 (885)
T KOG2023|consen 710 ---------------ANLNPENISVCNNAIWAIGEIALKMGLKMK--QYVSPVLEDLITIINRQNTPKTLLENTAITIGR 772 (885)
T ss_pred ---------------hcCChhhchHHHHHHHHHHHHHHHhchhhh--hHHHHHHHHHHHHhcccCchHHHHHhhhhhhhh
Confidence 233444556778899999988655553322 23344555555521 234556788899999999
Q ss_pred HHHHccccc
Q 000730 1295 LLKSINSHS 1303 (1326)
Q Consensus 1295 l~k~~~~~~ 1303 (1326)
++-.+-..+
T Consensus 773 Lg~~~Pe~v 781 (885)
T KOG2023|consen 773 LGYICPEEV 781 (885)
T ss_pred hhccCHHhc
Confidence 996665544
No 3
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.31 E-value=1.1e-07 Score=120.87 Aligned_cols=522 Identities=16% Similarity=0.170 Sum_probs=327.4
Q ss_pred HHHccCChhHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHhhhcccccccchhhHHHHHHHHHhhcCcHHHHHHHHHHH
Q 000730 707 SVCILLTKDELVATLHSCTTAICDRTKQSAEGAIQAVVEFVTKRGNELSETDVSRTTQSLLSAAVHITDKHLRLETLGAI 786 (1326)
Q Consensus 707 ~i~~~L~~~el~~ll~~ll~~L~d~~~~~~~~A~~~L~~~l~~rg~~L~e~~V~~I~~~I~~~l~~i~~~~~r~~~l~ai 786 (1326)
.+++.+-+++-.+++.-++++..+++.+-...|-.+|..+.+..|..+..= ..++....-+-|.....+ +|....+|+
T Consensus 106 eia~~~l~e~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~-~~~l~~lf~q~~~d~s~~-vr~~a~rA~ 183 (1075)
T KOG2171|consen 106 EIARNDLPEKWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPH-LDDLLRLFSQTMTDPSSP-VRVAAVRAL 183 (1075)
T ss_pred HHHHhccccchHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchh-HHHHHHHHHHhccCCcch-HHHHHHHHH
Confidence 345555555888999999999999999999999999999999999998433 667777777777777777 999999999
Q ss_pred HHHhhccC-chhHHHHHHhhhcccchhhhhccccCCCCchhHHHHhhcCcccHHHHHHHHHHHHccCCCccCCCccCCCC
Q 000730 787 SCLAENTN-SKIVFNEVLATAGKDIVTKDISRLRGGWPMQDAFHAFSQHAVLSFLFLEHLISALNQTPFVKGDMEKGDYS 865 (1326)
Q Consensus 787 ~~La~~h~-~~vV~~~Ll~~~~~~~~~~~~~~L~~~lP~d~~W~aLa~d~~l~~~vL~~LL~~L~~~p~~~e~~~~~~~~ 865 (1326)
...+..+. ++.. |+. .+.++..++..++..-...++
T Consensus 184 ~a~~~~~~~~~~~-----------------------------~~~-------~~~llP~~l~vl~~~i~~~d~------- 220 (1075)
T KOG2171|consen 184 GAFAEYLENNKSE-----------------------------VDK-------FRDLLPSLLNVLQEVIQDGDD------- 220 (1075)
T ss_pred HHHHHHhccchHH-----------------------------HHH-------HHHHhHHHHHHhHhhhhccch-------
Confidence 98888774 2211 221 233444444444433222111
Q ss_pred CCCCCCCccchHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHHHHHhhhcccCCCCCCCChHH-HHHHHHHHHHHh-
Q 000730 866 SHSADTWIDDDILQAAILALTAFFRGGGKVGKKAVEKSYAPVLAALTLQLGSCHGLASSGQHEPLR-AILTSFQAFCEC- 943 (1326)
Q Consensus 866 ~~~~~~~~~~~~~laA~~aL~Ell~~~~~~~~~av~~~fp~Lf~aLL~ql~~~~~~~~~~~~~P~~-~aleAlk~ll~~- 943 (1326)
.....+..+|-|++.... +-...++-+++ .+.+++....++. ++.| .|++-+-.+.+.
T Consensus 221 ----------~~a~~~l~~l~El~e~~p----k~l~~~l~~ii-~~~l~Ia~n~~l~-----~~~R~~ALe~ivs~~e~A 280 (1075)
T KOG2171|consen 221 ----------DAAKSALEALIELLESEP----KLLRPHLSQII-QFSLEIAKNKELE-----NSIRHLALEFLVSLSEYA 280 (1075)
T ss_pred ----------HHHHHHHHHHHHHHhhch----HHHHHHHHHHH-HHHHHHhhccccc-----HHHHHHHHHHHHHHHHhh
Confidence 112345666666665431 22333333322 2333333322221 1223 344433333222
Q ss_pred ---------hcchHHHHH------HHhcCCCC---------ChhhHHHHHHHHHHHHhhcCch-hHHHHHHHHhhhhccc
Q 000730 944 ---------VGDLEMRKI------LARDGEQN---------DKEKWINLIGDVAGCVSIKRPK-EVQTICLILTKSINRQ 998 (1326)
Q Consensus 944 ---------~g~~~~~~~------L~~~g~W~---------~~e~~~~gV~lLAr~m~~~~~~-~~~~i~~~L~~~L~s~ 998 (1326)
-|..=+... ++.+..|. ....+.-|++.|.|.-++-.|. .++.++.++-.+++|+
T Consensus 281 p~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~ 360 (1075)
T KOG2171|consen 281 PAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQST 360 (1075)
T ss_pred HHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCC
Confidence 111111111 12234675 2446788888888854443433 5889999999999999
Q ss_pred cccchHHHHHHHHHhhhcCCc-hhhHHHHHHHHHHhhcCCCChhHHHHHhhhccCCcch---hh-hhhHHHHHHHHHhhc
Q 000730 999 QRFQREAAAAALSEFVRYSGG-FDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI---HI-HQYATQVLSVILALL 1073 (1326)
Q Consensus 999 ~~~~Ri~a~aflsELl~~~~~-~~~l~~~~i~~L~~~l~D~~~~VR~lsLrGLgnl~~~---~v-~~~~~~lL~all~~L 1073 (1326)
+-.+|-+|.-.++-..--|.. -..-+++++....++++||+|.||..|+-++|+++.+ .+ ++|-..++++++..+
T Consensus 361 ~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~l 440 (1075)
T KOG2171|consen 361 EWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALL 440 (1075)
T ss_pred CHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHh
Confidence 999999999888877654432 2234678999999999999999999999999999865 34 445567777999999
Q ss_pred cCCCh-hHHHHHHHHHHHHhccCCcCCcchhHHhHHh-hhcCcCcCCChHHHHHHHHHHHHhhhcCCCcchHHHHHHHHh
Q 000730 1074 DDLDE-SVQLTAVSCLLTILKSSSKDAVEPILLNLSV-RLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHA 1151 (1326)
Q Consensus 1074 ~d~d~-~V~leAm~~L~~lL~~l~~~~~~~~l~~l~~-~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~ 1151 (1326)
++... +|..-|..+|-+.....++..+++++-.+-. ++.-+-++....||..+....|.++-.+. +.|..-. .
T Consensus 441 d~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~----~~F~pY~-d 515 (1075)
T KOG2171|consen 441 DSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQ----EKFIPYF-D 515 (1075)
T ss_pred cccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHh----hhhHhHH-H
Confidence 98764 7999999999999999999999999999988 77788889999999999999999986432 3333332 3
Q ss_pred hhhHHHHh-ccC----CChhHHHHHHHHHHhhchhhhh-hhh----hhhccc------cCCC-CCCCCh-HHHHHHHHHH
Q 000730 1152 MLPRLILH-IYD----DDLSVRQACRNTLKQVAPFMEI-GVY----GIFNSH------CFNS-DHRSDY-ETFVRDLTRQ 1213 (1326)
Q Consensus 1152 ~LvpLLlH-L~D----~~~~V~~ack~tL~~~a~lL~~-~l~----~lf~~~------~~~~-~~~l~~-~~f~~~i~k~ 1213 (1326)
.++|+|.| |+- +...+|-++-.++.-+|.-.|- +.. ++.+-. ...+ +...+| -.|+..+|+.
T Consensus 516 ~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~~~a~eliqll~~~~~~~~~~dd~~~sy~~~~warmc~i 595 (1075)
T KOG2171|consen 516 RLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKFLPLAEELIQLLLELQGSDQDDDDPLRSYMIAFWARMCRI 595 (1075)
T ss_pred HHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhHhHHHHHHHHHhhcccchhhccccHHHHHHHHHHHHHH
Confidence 44444444 332 2334555555555555544442 111 111110 1111 112233 5678889999
Q ss_pred HHHhCcchHHHHHHHHHHhh-------------------cCCCh-----------------hHHHHHHHHHhhhhccCch
Q 000730 1214 FVQHFPSRIDSYMGSTIQAF-------------------EAPWP-----------------IIQANAIYFSSSILCLCDD 1257 (1326)
Q Consensus 1214 L~~~~~~~~~~~l~~~l~y~-------------------kS~~~-----------------~IR~aA~~fiG~l~~~~~~ 1257 (1326)
|..+|-.....-+--.+.-- ...|. .=|..|+-.+|.+...+..
T Consensus 596 lg~~F~p~L~~Vmppl~~ta~~~p~~~~~d~~d~e~~~~~~~~e~~~~~~~e~~~I~Tsvl~eK~~A~~~Lv~~a~~lk~ 675 (1075)
T KOG2171|consen 596 LGDDFAPFLPVVMPPLLKTARLDPDVALSDEEDEEEEQDLDGWEVVELGDKENIGIRTSVLDEKETACEALGEYAKELKE 675 (1075)
T ss_pred hchhhHhHHHHHhHHHHHhhccCCcccCcCchhhhhccccccchhhccCCceeeeeeehhHHHHHHHHHHHHHHHHhhhh
Confidence 98877544433322111100 01111 1134455555555444432
Q ss_pred hhhhhccHHHHHH-HHHHHhccCCChhHHHHHHHHHHHHHHHccc
Q 000730 1258 QHILSLFYTQVFG-LLVVKLSQSADAIVRATCSSSLGWLLKSINS 1301 (1326)
Q Consensus 1258 ~~~~~~~~e~l~~-~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k~~~~ 1301 (1326)
.. ..++++++. .+-. |+-+..-.||..|++++..+.+.-.-
T Consensus 676 ~F--~pYve~v~~l~v~~-l~f~fhdgVR~aa~~~~p~ll~~~~~ 717 (1075)
T KOG2171|consen 676 AF--APYVEQVVELMVPL-LKFYFHDGVRKAAAESMPQLLTCALK 717 (1075)
T ss_pred hh--hhHHHHHHHHHHHH-HHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 22 234577777 4444 67789999999999999998855443
No 4
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.20 E-value=7.1e-06 Score=104.89 Aligned_cols=775 Identities=16% Similarity=0.166 Sum_probs=427.2
Q ss_pred HHHHHHHhcccCCCcchh-------hHHHHHHHHhhhcHHHHHHHHHHHHhhhccccchhhhhhcccccccchhHHHHHH
Q 000730 298 KIDWMYKQANIAIPTNRL-------GLAKAMGLVAASHLDAVLEMLKGILDNIGQSLFQRLLSFFSNSYRMEESDDIHAA 370 (1326)
Q Consensus 298 ~L~~ll~~~~~~~~~ere-------G~A~~~G~~A~~Hld~vL~~L~~~~~~~~~~~~~~~l~~~k~~~~~~e~~~~ks~ 370 (1326)
-|+.++..++-.++..|| ++...+|-.=+.|+|+.+..+..=. .|.. ..+|.+
T Consensus 119 ll~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~~l~~lf~q~~---------------~d~s-----~~vr~~ 178 (1075)
T KOG2171|consen 119 LLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLDDLLRLFSQTM---------------TDPS-----SPVRVA 178 (1075)
T ss_pred HHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHHHHHHHHHHhc---------------cCCc-----chHHHH
Confidence 355566666556666664 4566777777888888887774321 1221 138899
Q ss_pred HHHHHHHHHhcCCh-hhHHHHHHHhhHhHHHHhhh---hcCchhHHHHHHHHHHHHHHHHhhhhhcCCCcCCCCHHHHHH
Q 000730 371 LALMYGYAAKYAPS-TVIEARIDALVGTNMLSRLL---HVRHHTAKQAVITAIDLLGRAVINAAENGASFPLKKRDQLLD 446 (1326)
Q Consensus 371 l~l~yG~va~~ap~-~~il~~ve~~I~~~i~~~f~---~~kd~~~K~a~l~si~~i~~av~~~~~~~~~f~f~~k~eLl~ 446 (1326)
-...+|.++.+-+- .....++- ..++.++.... ...|...=...+.++..+.....+ +.=.+-.++++
T Consensus 179 a~rA~~a~~~~~~~~~~~~~~~~-~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk-------~l~~~l~~ii~ 250 (1075)
T KOG2171|consen 179 AVRALGAFAEYLENNKSEVDKFR-DLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPK-------LLRPHLSQIIQ 250 (1075)
T ss_pred HHHHHHHHHHHhccchHHHHHHH-HHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchH-------HHHHHHHHHHH
Confidence 99999999998851 12222222 23333333322 223332223445555555444222 22224568889
Q ss_pred HHHHHhccCCCCCCCCchhhhHhHHHHHHHHhhcccccCCCCChhHHHHHHHHhh-hccccCCC---C----------cc
Q 000730 447 YILTLMGREENDSFADSSIELLHTQALALSACTTLVTVEPKLTIETRNHVMKATL-GFFALPND---P----------ID 512 (1326)
Q Consensus 447 ~l~~li~~ep~~~l~s~~~~l~~vr~~am~a~t~L~~L~P~l~~e~~~~ll~~c~-~v~~lp~~---~----------~~ 512 (1326)
.++.+.+....+ .+ +|+.|+..++.+++--|...-.. ..+....+ -++.++.+ + .+
T Consensus 251 ~~l~Ia~n~~l~---~~------~R~~ALe~ivs~~e~Ap~~~k~~-~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded 320 (1075)
T KOG2171|consen 251 FSLEIAKNKELE---NS------IRHLALEFLVSLSEYAPAMCKKL-ALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDED 320 (1075)
T ss_pred HHHHHhhccccc---HH------HHHHHHHHHHHHHHhhHHHhhhc-hhhhccHHHHHHHhcCCcccchhhccccccccc
Confidence 999988765443 56 99999999999997744322221 12333333 33333322 1 11
Q ss_pred ----cHHHHHHHHHHHHHHHhhhcCCCCcccHHHHHHHHHHHHHHhcChhHHHhhHHHHHHHHHHHHHHhhhhcccccCC
Q 000730 513 ----VVNPLIDNLITLLCAILLTSGEDGRSRADQLLHILRQIDQYVSSPVEYQRRRSCLAVYEMLLKFRTLCVIGYCALG 588 (1326)
Q Consensus 513 ----l~~~~~~al~~lL~~ll~~~~~d~~~~~~~L~~~l~~l~pwl~S~~~~eR~RA~~~~~~lL~~~~~~~~~~~c~~~ 588 (1326)
-+.-..++++.+=+.|=-+ .-+--+++++...++|..-.+|.-|+.+++.+-. | |
T Consensus 321 ~~~~~~~~A~~~lDrlA~~L~g~---------~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~E--------G-c--- 379 (1075)
T KOG2171|consen 321 DEETPYRAAEQALDRLALHLGGK---------QVLPPLFEALEAMLQSTEWKERHAALLALSVIAE--------G-C--- 379 (1075)
T ss_pred cccCcHHHHHHHHHHHHhcCChh---------hehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHc--------c-c---
Confidence 2344456666543333211 2245677888999999999999999988765443 1 1
Q ss_pred CCCCccchhhhhhhhhccCCCCCCcccCCchhhhhhhhHHHHhhccccCCChhHHHHHHHHHHHHHHHHhhCCCCCCCCC
Q 000730 589 CHGSCTHIKQIDRAVLGNFSNLPSAYVLPSREALCLGNRVIMYLPRCADTDSEVRKISAQILDQLFSISLSLPRPVGSSS 668 (1326)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~~~~~ps~f~~~~~~f~~lG~Lvg~l~prC~D~~~~iR~~A~~~i~~Ll~I~l~~~~~~~~~~ 668 (1326)
|- .|. ..+-+++-+..+.-.||++.||..|..||..+ +- ....
T Consensus 380 -~~----------~m~-----------------~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~---st------dl~p 422 (1075)
T KOG2171|consen 380 -SD----------VMI-----------------GNLPKILPIVLNGLNDPHPRVRYAALNAIGQM---ST------DLQP 422 (1075)
T ss_pred -HH----------HHH-----------------HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhh---hh------hhcH
Confidence 11 111 25667788999999999999999999999755 11 1110
Q ss_pred CcchhhhhhhhhhcH-HHHHHhccCCCCChhHHHHHHHHH---HHccCChhHHHHHHHHHHH----hccCCChhhH-HHH
Q 000730 669 GIDLELSYGALSSLE-DVIAILRSDASIDPSEVFNRIVSS---VCILLTKDELVATLHSCTT----AICDRTKQSA-EGA 739 (1326)
Q Consensus 669 ~~~~~~~~~~l~~l~-~~~~~l~~~~~~~~~~~~~~i~~~---i~~~L~~~el~~ll~~ll~----~L~d~~~~~~-~~A 739 (1326)
..+. ..-+.+. -.+..+++ +.-..+..+-+.. |....+.+++..++-.+++ .|.++..+.. ..|
T Consensus 423 --~iqk--~~~e~l~~aL~~~ld~---~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~v 495 (1075)
T KOG2171|consen 423 --EIQK--KHHERLPPALIALLDS---TQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQA 495 (1075)
T ss_pred --HHHH--HHHHhccHHHHHHhcc---cCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHH
Confidence 0000 0000011 01122222 2223444443333 4567778888777766666 3444444443 455
Q ss_pred HHHHHHHHhhhcccccccchhhHHHHHHHHHhhcCcHHHH---HHHHHHHHHHhhccCchhHHHHHHhhhcccchhhhhc
Q 000730 740 IQAVVEFVTKRGNELSETDVSRTTQSLLSAAVHITDKHLR---LETLGAISCLAENTNSKIVFNEVLATAGKDIVTKDIS 816 (1326)
Q Consensus 740 ~~~L~~~l~~rg~~L~e~~V~~I~~~I~~~l~~i~~~~~r---~~~l~ai~~La~~h~~~vV~~~Ll~~~~~~~~~~~~~ 816 (1326)
...+-.+=..-+.++ ..-..+++-.+..-|.....+.-| -.++..+++.+
T Consensus 496 vtaIasvA~AA~~~F-~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~-------------------------- 548 (1075)
T KOG2171|consen 496 VTAIASVADAAQEKF-IPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIA-------------------------- 548 (1075)
T ss_pred HHHHHHHHHHHhhhh-HhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHH--------------------------
Confidence 555666666666666 333666777776666665533322 22233333222
Q ss_pred cccCCCCchhHHHHhhcC--cccHHHHHHHHHHHHccCCCccCCCccCCCCCCCCCCCccchHHHHHHHHHHHHHhcCCc
Q 000730 817 RLRGGWPMQDAFHAFSQH--AVLSFLFLEHLISALNQTPFVKGDMEKGDYSSHSADTWIDDDILQAAILALTAFFRGGGK 894 (1326)
Q Consensus 817 ~L~~~lP~d~~W~aLa~d--~~l~~~vL~~LL~~L~~~p~~~e~~~~~~~~~~~~~~~~~~~~~laA~~aL~Ell~~~~~ 894 (1326)
+|+|.+ .+++..+++.++..- ..- .+++ ++ .+--..++..-+++++-.
T Consensus 549 ------------~AVGke~F~~~a~eliqll~~~~-~~~--~~~d-----------d~-~~sy~~~~warmc~ilg~--- 598 (1075)
T KOG2171|consen 549 ------------RAVGKEKFLPLAEELIQLLLELQ-GSD--QDDD-----------DP-LRSYMIAFWARMCRILGD--- 598 (1075)
T ss_pred ------------HHhhhhhhhHhHHHHHHHHHhhc-ccc--hhhc-----------cc-cHHHHHHHHHHHHHHhch---
Confidence 333432 356777777777642 111 1110 01 111234555566665543
Q ss_pred chHHHHHHhhHHHHHHHHHHhhhcccCCCCCCCChHHHHHHHHHHHHHhhcchHHHHHHHhcC---------CCCChhhH
Q 000730 895 VGKKAVEKSYAPVLAALTLQLGSCHGLASSGQHEPLRAILTSFQAFCECVGDLEMRKILARDG---------EQNDKEKW 965 (1326)
Q Consensus 895 ~~~~av~~~fp~Lf~aLL~ql~~~~~~~~~~~~~P~~~aleAlk~ll~~~g~~~~~~~L~~~g---------~W~~~e~~ 965 (1326)
. -.++.|.++-.|+.....-=+.... ++. ..+ ...+.+.+ ...+.+| +-++.++-
T Consensus 599 ~----F~p~L~~Vmppl~~ta~~~p~~~~~---d~~--d~e------~~~~~~~~-e~~~~~~~e~~~I~Tsvl~eK~~A 662 (1075)
T KOG2171|consen 599 D----FAPFLPVVMPPLLKTARLDPDVALS---DEE--DEE------EEQDLDGW-EVVELGDKENIGIRTSVLDEKETA 662 (1075)
T ss_pred h----hHhHHHHHhHHHHHhhccCCcccCc---Cch--hhh------hccccccc-hhhccCCceeeeeeehhHHHHHHH
Confidence 2 4445555555444444221111100 000 000 01111111 1111111 11256777
Q ss_pred HHHHHHHHHHHhhcCchhHHHHHHHHhhhhcc-ccccchHHHHHHHHHhhhcC-----Cc---hhhHHHHHHHHHHhhcC
Q 000730 966 INLIGDVAGCVSIKRPKEVQTICLILTKSINR-QQRFQREAAAAALSEFVRYS-----GG---FDSLLEQMVEALCRHVS 1036 (1326)
Q Consensus 966 ~~gV~lLAr~m~~~~~~~~~~i~~~L~~~L~s-~~~~~Ri~a~aflsELl~~~-----~~---~~~l~~~~i~~L~~~l~ 1036 (1326)
.+.+...|.-+....-|++..++...+|.++- -++..|.+|+-.+-.++++- .. ..-+.+.+...+...+.
T Consensus 663 ~~~Lv~~a~~lk~~F~pYve~v~~l~v~~l~f~fhdgVR~aa~~~~p~ll~~~~~A~~~~p~~l~~l~~~~~~~l~~~l~ 742 (1075)
T KOG2171|consen 663 CEALGEYAKELKEAFAPYVEQVVELMVPLLKFYFHDGVRKAAAESMPQLLTCALKACQGGPEYLKQLWEAIRPALIKALE 742 (1075)
T ss_pred HHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhh
Confidence 77888888888888888999999977777775 55888999888877777741 11 12334556777777775
Q ss_pred C-CChhHHHHHhhhccCCc---------chhhhhhHHHHHHHHHh-------hccCC----ChhHHHHHHH---------
Q 000730 1037 D-ESPTVRGLCLRGLVQIP---------SIHIHQYATQVLSVILA-------LLDDL----DESVQLTAVS--------- 1086 (1326)
Q Consensus 1037 D-~~~~VR~lsLrGLgnl~---------~~~v~~~~~~lL~all~-------~L~d~----d~~V~leAm~--------- 1086 (1326)
+ |.+.|-.-.++++|+.- .+++......++..++. ...+. ++...-|.|.
T Consensus 743 ~E~e~~vl~~vl~~f~~~i~~~G~~~L~~~~~~~~~~~~~~~~l~~~~~~~~r~~~~~eed~d~~eee~~~e~d~~ll~~ 822 (1075)
T KOG2171|consen 743 EEPETEVLSEILESFAECIEVMGDNCLNEDGLEALLGGLLAQLLQHFKRMQDRQEEDDEEDDDIEEEEDLDEQDAYLLDA 822 (1075)
T ss_pred cCCcHHHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHhhhhHHHHHH
Confidence 5 68888888888887542 11111111111111111 11110 1112222222
Q ss_pred ---HHHHHhccCCcCCcchhHHhHHhhhcCcCcCCChHHHHHHHHHHHHhhhcCCCcchHHHHHHHHhhhhHHHHhccCC
Q 000730 1087 ---CLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDD 1163 (1326)
Q Consensus 1087 ---~L~~lL~~l~~~~~~~~l~~l~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~LvpLLlHL~D~ 1163 (1326)
++..+... .++.+-+++-++...+-.++.+.+.--|..|...||+++.+++.. ...+.+ ..+++++.-++|.
T Consensus 823 i~~i~~~l~k~-~k~~f~p~f~~~~p~iv~~l~~~~~~~r~~av~~~~d~ie~~~~a-~~~~~~---~~~p~~~~~~~d~ 897 (1075)
T KOG2171|consen 823 ISDILAALAKA-LKGSFLPFFENFLPLIVKLLKSKKTVARQWAVCIFDDLIEGCGEA-SAKYKE---RFLPLVLEALQDS 897 (1075)
T ss_pred HHHHHHHHHHH-ccccccHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhcccc-cchHHH---HHHHHHHHHcCCC
Confidence 23333332 345667788888888888888888777999999999999976543 223322 4677888899999
Q ss_pred ChhHHHHHHHHHHhhchhhhhh-----------hhhhhccccCC-CCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHH
Q 000730 1164 DLSVRQACRNTLKQVAPFMEIG-----------VYGIFNSHCFN-SDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQ 1231 (1326)
Q Consensus 1164 ~~~V~~ack~tL~~~a~lL~~~-----------l~~lf~~~~~~-~~~~l~~~~f~~~i~k~L~~~~~~~~~~~l~~~l~ 1231 (1326)
+|+||+++.+.++-||.+-+-. +..+++..... +....-++.....|+|.+. ++|..+. +.|.+.
T Consensus 898 ~pEVRqaAsYGiGvlaq~~g~~y~~v~~~~l~~L~~~iq~~~ar~Ee~~~ateNa~gaiaki~~-~~~~~i~--vdqvl~ 974 (1075)
T KOG2171|consen 898 DPEVRQAAAYGMGVLAQFGGEDYAPVCSEALPLLVQVLQPPLARTEENRRATENAIGAIAKILL-FNPNRIP--VDQVLP 974 (1075)
T ss_pred CHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHcChhhhhHHHhHHHHHHHHHHHHHHH-hCCccCc--HHHHHH
Confidence 9999999999999999764432 33444443211 2234456667777777554 4556655 666666
Q ss_pred --hhcCCChhHHHHHHHHHhhhhccCc
Q 000730 1232 --AFEAPWPIIQANAIYFSSSILCLCD 1256 (1326)
Q Consensus 1232 --y~kS~~~~IR~aA~~fiG~l~~~~~ 1256 (1326)
+...|-..=+..|+...+++...+.
T Consensus 975 ~~l~~LPl~~D~eEa~~iy~~l~~L~e 1001 (1075)
T KOG2171|consen 975 AWLSWLPLKEDKEEAVPIYTFLSDLYE 1001 (1075)
T ss_pred HHHHhCCCccchhhhhhHHHHHHHHHH
Confidence 3345555556666666666655444
No 5
>PRK09687 putative lyase; Provisional
Probab=99.07 E-value=5.9e-09 Score=119.50 Aligned_cols=226 Identities=15% Similarity=0.110 Sum_probs=157.2
Q ss_pred HHHHHHHhhhhccccccchHHHHHHHHHhhhcCCchhhHHHHHHHHHHhh-cCCCChhHHHHHhhhccCCcchhhhhhHH
Q 000730 985 QTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRH-VSDESPTVRGLCLRGLVQIPSIHIHQYAT 1063 (1326)
Q Consensus 985 ~~i~~~L~~~L~s~~~~~Ri~a~aflsELl~~~~~~~~l~~~~i~~L~~~-l~D~~~~VR~lsLrGLgnl~~~~v~~~~~ 1063 (1326)
+.++..+.+.+++++...|..|+..++++-..... .+..+..|... ++|+++.||..++.+||++..... ...+
T Consensus 53 ~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~----~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~-~~~~ 127 (280)
T PRK09687 53 QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC----QDNVFNILNNLALEDKSACVRASAINATGHRCKKNP-LYSP 127 (280)
T ss_pred chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc----hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccc-ccch
Confidence 45566667778899999999999999997543211 23455566655 799999999999999999865422 1235
Q ss_pred HHHHHHHhhccCCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCcCCChHHHHHHHHHHHHhhhcCCCcchH
Q 000730 1064 QVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQRE 1143 (1326)
Q Consensus 1064 ~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~l~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~~ 1143 (1326)
.+++.+...+.|.+..|+..|+.+|+++-. ...-+ .|.++.+|+++.||..|+..+|.+.. +..
T Consensus 128 ~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~----~~ai~-------~L~~~L~d~~~~VR~~A~~aLg~~~~---~~~-- 191 (280)
T PRK09687 128 KIVEQSQITAFDKSTNVRFAVAFALSVIND----EAAIP-------LLINLLKDPNGDVRNWAAFALNSNKY---DNP-- 191 (280)
T ss_pred HHHHHHHHHhhCCCHHHHHHHHHHHhccCC----HHHHH-------HHHHHhcCCCHHHHHHHHHHHhcCCC---CCH--
Confidence 567778888888888999999999987642 22222 23456789999999999999999821 111
Q ss_pred HHHHHHHhhhhHHHHhccCCChhHHHHHHHHHHhhchhhhhhhhhhhccccCCCCCCCChHHHHHHHHHHHHHhCcchHH
Q 000730 1144 AFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEIGVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRID 1223 (1326)
Q Consensus 1144 ~~~eQv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL~~~l~~lf~~~~~~~~~~l~~~~f~~~i~k~L~~~~~~~~~ 1223 (1326)
....+|+-.|+|+++.|++.+..+|++++. +..+..+
T Consensus 192 -------~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~-----------------------~~av~~L------------- 228 (280)
T PRK09687 192 -------DIREAFVAMLQDKNEEIRIEAIIGLALRKD-----------------------KRVLSVL------------- 228 (280)
T ss_pred -------HHHHHHHHHhcCCChHHHHHHHHHHHccCC-----------------------hhHHHHH-------------
Confidence 244556666699999999999999988553 1122222
Q ss_pred HHHHHHHHhhcCCChhHHHHHHHHHhhhhccCchhhhhhccHHHHHHHHHHHhccCCChhHHHHHHHHHHH
Q 000730 1224 SYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGW 1294 (1326)
Q Consensus 1224 ~~l~~~l~y~kS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~ 1294 (1326)
+.+++++. +|..|+.-+|. ++.+..+.+|+.++.++||+.|+.+|-+||..
T Consensus 229 ------i~~L~~~~--~~~~a~~ALg~------------ig~~~a~p~L~~l~~~~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 229 ------IKELKKGT--VGDLIIEAAGE------------LGDKTLLPVLDTLLYKFDDNEIITKAIDKLKR 279 (280)
T ss_pred ------HHHHcCCc--hHHHHHHHHHh------------cCCHhHHHHHHHHHhhCCChhHHHHHHHHHhc
Confidence 22444444 45556655663 33456788899843359999999999999753
No 6
>PRK09687 putative lyase; Provisional
Probab=99.01 E-value=1.3e-08 Score=116.72 Aligned_cols=224 Identities=15% Similarity=0.050 Sum_probs=127.4
Q ss_pred HHHHHhhcCCCChhHHHHHhhhccCCcchhhhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhccCCc-CCcchhHHh
Q 000730 1028 VEALCRHVSDESPTVRGLCLRGLVQIPSIHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSK-DAVEPILLN 1106 (1326)
Q Consensus 1028 i~~L~~~l~D~~~~VR~lsLrGLgnl~~~~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~-~~~~~~l~~ 1106 (1326)
++.|...+.|++..||..+++.|+.++. +.+++.+...+.+.|..++..|..+|+.+...-.. ...-+.+..
T Consensus 25 ~~~L~~~L~d~d~~vR~~A~~aL~~~~~-------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~ 97 (280)
T PRK09687 25 DDELFRLLDDHNSLKRISSIRVLQLRGG-------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNN 97 (280)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcCc-------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHH
Confidence 4566666788888888888888887775 44556666666677777888888888876542110 111122222
Q ss_pred HHhhhcCcCcCCChHHHHHHHHHHHHhhhcCCCcchHHHHHHHHhhhhHHHHhccCCChhHHHHHHHHHHhhchhhhh-h
Q 000730 1107 LSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEI-G 1185 (1326)
Q Consensus 1107 l~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL~~-~ 1185 (1326)
+ +.+|+.+.||.+|+..+|++..-..... ...+-.|..++.|+++.|+.++..+|+.++.--.. .
T Consensus 98 l------~~~D~d~~VR~~A~~aLG~~~~~~~~~~--------~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~~ai~~ 163 (280)
T PRK09687 98 L------ALEDKSACVRASAINATGHRCKKNPLYS--------PKIVEQSQITAFDKSTNVRFAVAFALSVINDEAAIPL 163 (280)
T ss_pred H------HhcCCCHHHHHHHHHHHhcccccccccc--------hHHHHHHHHHhhCCCHHHHHHHHHHHhccCCHHHHHH
Confidence 1 3577777888888888887753111001 01233455667788888888888888766532111 2
Q ss_pred hhhhhccccCCCCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHHhhcCCChhHHHHHHHHHhhhhccCchhhhhhccH
Q 000730 1186 VYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFY 1265 (1326)
Q Consensus 1186 l~~lf~~~~~~~~~~l~~~~f~~~i~k~L~~~~~~~~~~~l~~~l~y~kS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~ 1265 (1326)
+..++. +.. + +.-......|.+. +..-..-....+.-++++.+.||.+|++.+|.+ +.
T Consensus 164 L~~~L~-----d~~---~-~VR~~A~~aLg~~-~~~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~------------~~ 221 (280)
T PRK09687 164 LINLLK-----DPN---G-DVRNWAAFALNSN-KYDNPDIREAFVAMLQDKNEEIRIEAIIGLALR------------KD 221 (280)
T ss_pred HHHHhc-----CCC---H-HHHHHHHHHHhcC-CCCCHHHHHHHHHHhcCCChHHHHHHHHHHHcc------------CC
Confidence 222221 110 1 1111222222221 111111222233345788888888888888843 22
Q ss_pred HHHHHHHHHHhccCCChhHHHHHHHHHHHHHH
Q 000730 1266 TQVFGLLVVKLSQSADAIVRATCSSSLGWLLK 1297 (1326)
Q Consensus 1266 e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k 1297 (1326)
+.++..|.. .++|++ ||..|++|||.++.
T Consensus 222 ~~av~~Li~-~L~~~~--~~~~a~~ALg~ig~ 250 (280)
T PRK09687 222 KRVLSVLIK-ELKKGT--VGDLIIEAAGELGD 250 (280)
T ss_pred hhHHHHHHH-HHcCCc--hHHHHHHHHHhcCC
Confidence 556777777 677766 77888888888773
No 7
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.00 E-value=3.8e-08 Score=115.10 Aligned_cols=489 Identities=27% Similarity=0.247 Sum_probs=284.5
Q ss_pred hhcCchhHHHHHHHHHHHHHHHHhhhhhcCCCcCCCCHHHHHHHHHHHhccCCCCCCCCchhhhHhHHHHHHHHhhcccc
Q 000730 404 LHVRHHTAKQAVITAIDLLGRAVINAAENGASFPLKKRDQLLDYILTLMGREENDSFADSSIELLHTQALALSACTTLVT 483 (1326)
Q Consensus 404 ~~~kd~~~K~a~l~si~~i~~av~~~~~~~~~f~f~~k~eLl~~l~~li~~ep~~~l~s~~~~l~~vr~~am~a~t~L~~ 483 (1326)
++....+.|++-+.+....+.++....+.+.-|+.+++++.++++...|..|- .+-+..+-......+..++++++-
T Consensus 21 ~h~~h~~a~~~~~~s~~l~~~s~i~a~~~~~~~pl~~rdq~l~~i~~~mg~~~---~a~sl~~v~~~~a~~~~~~~t~vl 97 (533)
T KOG2032|consen 21 LHVRHQTAKQAVITAIDLLGRSVINAAETGATFPLKRRDQMLDYILTLMGREG---FAESLLEVLHTQALALNACTTLVL 97 (533)
T ss_pred HHHHHHHHHHHHHHcccccchHHHHHHHhhcCCchhhHHHHHHHHHHhhchhh---hhhhhcchhhhHHHHHHHHHHHHH
Confidence 45667788999999999999999888777778899999999999999998753 222223444567788999999999
Q ss_pred cCCCCChhHHHHHHHHhhhccccCCCCcccHHHHHHHHHHHH-HHHhhhcCCCCcccHHHHHHHHHHHHHHhcChhHHHh
Q 000730 484 VEPKLTIETRNHVMKATLGFFALPNDPIDVVNPLIDNLITLL-CAILLTSGEDGRSRADQLLHILRQIDQYVSSPVEYQR 562 (1326)
Q Consensus 484 L~P~l~~e~~~~ll~~c~~v~~lp~~~~~l~~~~~~al~~lL-~~ll~~~~~d~~~~~~~L~~~l~~l~pwl~S~~~~eR 562 (1326)
.+|.+..+++..++. +|.+++.-+-.+- +.+-.++| ..+ ++|
T Consensus 98 ~e~~lti~~g~~v~~--------------lypqlf~llLllvscvlg~k~p-------~~l----------------qa~ 140 (533)
T KOG2032|consen 98 VEPKLTIETGNRVMK--------------LYPQLFSLLLLLVSCVLGLKSP-------DSL----------------QAL 140 (533)
T ss_pred HHHhhhhhcCchHHH--------------hhHHHHHHHHHHHHHHhhccCc-------ccH----------------HHH
Confidence 999998888887773 3444433222211 22222222 222 222
Q ss_pred hHHHHHHHHHHHHHHhhhhcccccCCCCCCccchhhhhhhhhccCCCCCCcccCCchhhhhhhhHHH-HhhccccCCChh
Q 000730 563 RRSCLAVYEMLLKFRTLCVIGYCALGCHGSCTHIKQIDRAVLGNFSNLPSAYVLPSREALCLGNRVI-MYLPRCADTDSE 641 (1326)
Q Consensus 563 ~RA~~~~~~lL~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~ps~f~~~~~~f~~lG~Lvg-~l~prC~D~~~~ 641 (1326)
+| ..+...++ +..-++-.+| .. +..|+|.+.| ..+-.|+|-++.
T Consensus 141 ~r--~~~~~al~-~~~~~pc~~~---------------------ta-----------tl~cl~lqsa~e~~~~~sde~~~ 185 (533)
T KOG2032|consen 141 SR--LEDVIALL-KSLVAPCHSC---------------------TA-----------TLCCLILQSAEEAIQAVSDEVSR 185 (533)
T ss_pred HH--HHhHHHHH-HhhhhHHHHh---------------------HH-----------HHHHHHHHHhHHHHHHhhhcccc
Confidence 22 22233333 1111110111 11 2358999888 889999999999
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCCCCCCCcchhhhhhhhhhcHHHHHHhccCCCCChhHHHH---HHHHHHHccCCh--hH
Q 000730 642 VRKISAQILDQLFSISLSLPRPVGSSSGIDLELSYGALSSLEDVIAILRSDASIDPSEVFN---RIVSSVCILLTK--DE 716 (1326)
Q Consensus 642 iR~~A~~~i~~Ll~I~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~~---~i~~~i~~~L~~--~e 716 (1326)
+-.++.....|...++- +++.-+...+.+ . ..- ++.+ +.++++..++.... .+++...+..-+ .-
T Consensus 186 ~w~qls~~~~h~~g~tr-lqr~m~~~~~~~--~-~~i---l~q~---~ss~ts~~~~~ritd~Af~ael~~~~~l~~~~l 255 (533)
T KOG2032|consen 186 RWSQLSDNDIHRVGLTR-LQRFMACVQDLE--M-GKI---LAQL---LSSITSEKENGRITDIAFFAELKRPKELDKTGL 255 (533)
T ss_pred hhhhcccCcccHHHHHH-HHHHHHhhCCcc--H-HHH---Hhhc---ccccchhcccchHHHHHHHHHHhCccccccccc
Confidence 88877777777777753 333111111100 0 001 1111 01111111111111 344444444333 56
Q ss_pred HHHHHHHHHHhccCCChhhHHHHHHHHHHHHhhhcccccccchhhHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccCch
Q 000730 717 LVATLHSCTTAICDRTKQSAEGAIQAVVEFVTKRGNELSETDVSRTTQSLLSAAVHITDKHLRLETLGAISCLAENTNSK 796 (1326)
Q Consensus 717 l~~ll~~ll~~L~d~~~~~~~~A~~~L~~~l~~rg~~L~e~~V~~I~~~I~~~l~~i~~~~~r~~~l~ai~~La~~h~~~ 796 (1326)
+.+++..+.+...||+.....-|+..|......-..+. .+.++.++++|+..|...... ..++++|.+|+.--...
T Consensus 256 L~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv-~th~~~~ldaii~gL~D~~~~---~V~leam~~Lt~v~~~~ 331 (533)
T KOG2032|consen 256 LGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKV-RTHKTTQLDAIIRGLYDDLNE---EVQLEAMKCLTMVLEKA 331 (533)
T ss_pred HHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHH-HHhHHHHHHHHHHHHhcCCcc---HHHHHHHHHHHHHHHhh
Confidence 77899999999999999888888887777776644455 456889999999999888774 45677777776554333
Q ss_pred hHHHHHHhhhcccchhhhhccccCCCCchh----HHHHhhcCcccHHHHHHHHHHHHccCCCccCCCc-----cCCCCCC
Q 000730 797 IVFNEVLATAGKDIVTKDISRLRGGWPMQD----AFHAFSQHAVLSFLFLEHLISALNQTPFVKGDME-----KGDYSSH 867 (1326)
Q Consensus 797 vV~~~Ll~~~~~~~~~~~~~~L~~~lP~d~----~W~aLa~d~~l~~~vL~~LL~~L~~~p~~~e~~~-----~~~~~~~ 867 (1326)
+.++ + -+|++|++. +|..-..+-..+.-+|-.-|.++.+++..+...| ...+..|
T Consensus 332 ~~~~-l---------------~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllh 395 (533)
T KOG2032|consen 332 SNDD-L---------------ESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLH 395 (533)
T ss_pred hhcc-h---------------hhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceee
Confidence 3322 2 267888875 8999888888999999999999888886654321 1222233
Q ss_pred CCCCCccchHH--HHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHHHHHhhhcccCCCCCCCChHHHHHHHHHHHHHhhc
Q 000730 868 SADTWIDDDIL--QAAILALTAFFRGGGKVGKKAVEKSYAPVLAALTLQLGSCHGLASSGQHEPLRAILTSFQAFCECVG 945 (1326)
Q Consensus 868 ~~~~~~~~~~~--laA~~aL~Ell~~~~~~~~~av~~~fp~Lf~aLL~ql~~~~~~~~~~~~~P~~~aleAlk~ll~~~g 945 (1326)
-. +..| .+|-.+..-+.+-+ -+++++..+|++ .-
T Consensus 396 l~-----d~~p~va~ACr~~~~~c~p~--l~rke~~~~~q~-------------------------------------~l 431 (533)
T KOG2032|consen 396 LQ-----DPNPYVARACRSELRTCYPN--LVRKELYHLFQE-------------------------------------SL 431 (533)
T ss_pred eC-----CCChHHHHHHHHHHHhcCch--hHHHHHHHHHhh-------------------------------------hh
Confidence 22 1222 22222222222222 222222222222 11
Q ss_pred chHHHHHHHhcCCCCChhhHHHHHHHHHHHHhhcCchhHHHHHHHHhhhhccccccchHHHHHHHHHhhhcCCc---hhh
Q 000730 946 DLEMRKILARDGEQNDKEKWINLIGDVAGCVSIKRPKEVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGG---FDS 1022 (1326)
Q Consensus 946 ~~~~~~~L~~~g~W~~~e~~~~gV~lLAr~m~~~~~~~~~~i~~~L~~~L~s~~~~~Ri~a~aflsELl~~~~~---~~~ 1022 (1326)
+..+ .... +.|..-+- -+.++++...--......-++++..+.+|.+++.+-..+..+... ...
T Consensus 432 d~~~-~~~q--------~Fyn~~c~----~L~~i~~d~l~~~~t~~~~~f~sswe~vr~aavl~t~~~vd~l~~~~c~~~ 498 (533)
T KOG2032|consen 432 DTDM-ARFQ--------AFYNQWCI----QLNHIHPDILMLLLTEDQHIFSSSWEQVREAAVLKTTRSVDSLVRAACSSA 498 (533)
T ss_pred HHhH-HHHH--------HHHHHHHH----HHhhhCHHHHHHHHHhchhheecchHHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 0000 0000 11111111 122233333333334445677888899999988766665544221 111
Q ss_pred HHHHHHHHHHhhcCCCChhHHHHHhhhccCCc
Q 000730 1023 LLEQMVEALCRHVSDESPTVRGLCLRGLVQIP 1054 (1326)
Q Consensus 1023 l~~~~i~~L~~~l~D~~~~VR~lsLrGLgnl~ 1054 (1326)
-.+.+...|..-..||.|.|+..+..+++-+.
T Consensus 499 d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~ 530 (533)
T KOG2032|consen 499 DGLQLRSSLSTLWRDPRPEVTDSARKALDLLS 530 (533)
T ss_pred hHHHHHHHHHHHccCCCchhHHHHHHHhhhHh
Confidence 13567788888899999999999999987553
No 8
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.94 E-value=2.7e-08 Score=131.63 Aligned_cols=244 Identities=14% Similarity=0.052 Sum_probs=155.7
Q ss_pred HHHHHHhhhhccccccchHHHHHHHHHhhhcCCchhhHHHHHHHHHHhhcCCCChhHHHHHhhhccCCcchhhhhhHHHH
Q 000730 986 TICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSIHIHQYATQV 1065 (1326)
Q Consensus 986 ~i~~~L~~~L~s~~~~~Ri~a~aflsELl~~~~~~~~l~~~~i~~L~~~l~D~~~~VR~lsLrGLgnl~~~~v~~~~~~l 1065 (1326)
+.+..|...|++++...|..|+..+.++- .+..+..|.+.++|+++.||..++.+|+.++.... .
T Consensus 621 ~~~~~L~~~L~D~d~~VR~~Av~~L~~~~---------~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~------~ 685 (897)
T PRK13800 621 PSVAELAPYLADPDPGVRRTAVAVLTETT---------PPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLP------P 685 (897)
T ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHhhhc---------chhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccC------c
Confidence 36677788888888888888887777742 26677788888888888888888888877642100 0
Q ss_pred HHHHHhhccCCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCcCCChHHHHHHHHHHHHhhhcCCCcchHHH
Q 000730 1066 LSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAF 1145 (1326)
Q Consensus 1066 L~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~l~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~~~~ 1145 (1326)
.+++...|++.|..|+..|+..|+.+-. .... . +...++|+++.||.+|+..+|.+.. .
T Consensus 686 ~~~L~~~L~~~d~~VR~~A~~aL~~~~~----~~~~-~-------l~~~L~D~d~~VR~~Av~aL~~~~~------~--- 744 (897)
T PRK13800 686 APALRDHLGSPDPVVRAAALDVLRALRA----GDAA-L-------FAAALGDPDHRVRIEAVRALVSVDD------V--- 744 (897)
T ss_pred hHHHHHHhcCCCHHHHHHHHHHHHhhcc----CCHH-H-------HHHHhcCCCHHHHHHHHHHHhcccC------c---
Confidence 2345556666777788888887777531 1111 1 1225678888888888888887532 0
Q ss_pred HHHHHhhhhHHHHhccCCChhHHHHHHHHHHhhchhhhhhhhhhhccccCCCCCCCChHHHHHHHHHHHHHhC-cchHHH
Q 000730 1146 LEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEIGVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHF-PSRIDS 1224 (1326)
Q Consensus 1146 ~eQv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL~~~l~~lf~~~~~~~~~~l~~~~f~~~i~k~L~~~~-~~~~~~ 1224 (1326)
.+|+..+.|+++.|+.++..+|...+.--.-.+..+.. . ++|+. ...-......|.+.. +..+.
T Consensus 745 --------~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~~~~~~L~~-l-l~D~d----~~VR~aA~~aLg~~g~~~~~~- 809 (897)
T PRK13800 745 --------ESVAGAATDENREVRIAVAKGLATLGAGGAPAGDAVRA-L-TGDPD----PLVRAAALAALAELGCPPDDV- 809 (897)
T ss_pred --------HHHHHHhcCCCHHHHHHHHHHHHHhccccchhHHHHHH-H-hcCCC----HHHHHHHHHHHHhcCCcchhH-
Confidence 12455688999999998888888876421101122221 1 22221 233333344444433 22222
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHHhhhhccCchhhhhhccHHHHHHHHHHHhccCCChhHHHHHHHHHHHH
Q 000730 1225 YMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWL 1295 (1326)
Q Consensus 1225 ~l~~~l~y~kS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l 1295 (1326)
...+..++++.+.||.+|+..+|.+. .+.....|.. +++||++.||..|+.||+.+
T Consensus 810 --~~l~~aL~d~d~~VR~~Aa~aL~~l~------------~~~a~~~L~~-~L~D~~~~VR~~A~~aL~~~ 865 (897)
T PRK13800 810 --AAATAALRASAWQVRQGAARALAGAA------------ADVAVPALVE-ALTDPHLDVRKAAVLALTRW 865 (897)
T ss_pred --HHHHHHhcCCChHHHHHHHHHHHhcc------------ccchHHHHHH-HhcCCCHHHHHHHHHHHhcc
Confidence 22445678888889999998887432 2344577888 78999999999999998885
No 9
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.89 E-value=7.4e-08 Score=127.51 Aligned_cols=242 Identities=20% Similarity=0.166 Sum_probs=169.8
Q ss_pred HHHHHHHhhhhccccccchHHHHHHHHHhhhcCCchhhHHHHHHHHHHhhcCCCChhHHHHHhhhccCCcchhhhhhHHH
Q 000730 985 QTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSIHIHQYATQ 1064 (1326)
Q Consensus 985 ~~i~~~L~~~L~s~~~~~Ri~a~aflsELl~~~~~~~~l~~~~i~~L~~~l~D~~~~VR~lsLrGLgnl~~~~v~~~~~~ 1064 (1326)
+..+..|...|++++...|..|+..+.++...... ...|.+.+.|+++.||..+++.|+.+..+..
T Consensus 651 ~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~--------~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~~------ 716 (897)
T PRK13800 651 PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPP--------APALRDHLGSPDPVVRAAALDVLRALRAGDA------ 716 (897)
T ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCc--------hHHHHHHhcCCCHHHHHHHHHHHHhhccCCH------
Confidence 44666777888999999999999999987532211 1256667789999999999999998764321
Q ss_pred HHHHHHhhccCCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCcCCChHHHHHHHHHHHHhhhcCCCcchHH
Q 000730 1065 VLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREA 1144 (1326)
Q Consensus 1065 lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~l~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~~~ 1144 (1326)
..++..|.|.|..|+.+|+.+|+++-. ... +..+++|+++.||.+|...+|.+.....
T Consensus 717 --~~l~~~L~D~d~~VR~~Av~aL~~~~~------~~~--------l~~~l~D~~~~VR~~aa~aL~~~~~~~~------ 774 (897)
T PRK13800 717 --ALFAAALGDPDHRVRIEAVRALVSVDD------VES--------VAGAATDENREVRIAVAKGLATLGAGGA------ 774 (897)
T ss_pred --HHHHHHhcCCCHHHHHHHHHHHhcccC------cHH--------HHHHhcCCCHHHHHHHHHHHHHhccccc------
Confidence 245667899999999999999998521 111 2357899999999999999999865111
Q ss_pred HHHHHHhhhhHHHHhccCCChhHHHHHHHHHHhhchh--hhhhhhhhhccccCCCCCCCChHHHHHH-HHHHHHHhCcch
Q 000730 1145 FLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPF--MEIGVYGIFNSHCFNSDHRSDYETFVRD-LTRQFVQHFPSR 1221 (1326)
Q Consensus 1145 ~~eQv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~l--L~~~l~~lf~~~~~~~~~~l~~~~f~~~-i~k~L~~~~~~~ 1221 (1326)
..+..|+--++|+++.|+.++-.+|..++.- +--.+... +.++. ..++. ....|..--+.
T Consensus 775 ------~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~~~~~~l~~a-----L~d~d-----~~VR~~Aa~aL~~l~~~- 837 (897)
T PRK13800 775 ------PAGDAVRALTGDPDPLVRAAALAALAELGCPPDDVAAATAA-----LRASA-----WQVRQGAARALAGAAAD- 837 (897)
T ss_pred ------hhHHHHHHHhcCCCHHHHHHHHHHHHhcCCcchhHHHHHHH-----hcCCC-----hHHHHHHHHHHHhcccc-
Confidence 1134444557899999999999999998742 10112222 22221 12333 34444433222
Q ss_pred HHHHHHHHHHhhcCCChhHHHHHHHHHhhhhccCchhhhhhccHHHHHHHHHHHhccCCChhHHHHHHHHHH
Q 000730 1222 IDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLG 1293 (1326)
Q Consensus 1222 ~~~~l~~~l~y~kS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~ 1293 (1326)
.-+...+..+++|.+.||.+|+.-+|.+ .. ......+|.. .++|+|+.||..|++||.
T Consensus 838 --~a~~~L~~~L~D~~~~VR~~A~~aL~~~--~~---------~~~a~~~L~~-al~D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 838 --VAVPALVEALTDPHLDVRKAAVLALTRW--PG---------DPAARDALTT-ALTDSDADVRAYARRALA 895 (897)
T ss_pred --chHHHHHHHhcCCCHHHHHHHHHHHhcc--CC---------CHHHHHHHHH-HHhCCCHHHHHHHHHHHh
Confidence 2335556688999999999999999974 11 1445677888 789999999999999986
No 10
>PTZ00429 beta-adaptin; Provisional
Probab=98.73 E-value=3.4e-06 Score=107.86 Aligned_cols=313 Identities=13% Similarity=0.114 Sum_probs=206.2
Q ss_pred hhhHHHHHHHHHHHHhhcCchhHHHHHHHHhhhhccccccchHHHHHHHHHhhhcCCchhhHHHHHHHHHHhhcCCCChh
Q 000730 962 KEKWINLIGDVAGCVSIKRPKEVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPT 1041 (1326)
Q Consensus 962 ~e~~~~gV~lLAr~m~~~~~~~~~~i~~~L~~~L~s~~~~~Ri~a~aflsELl~~~~~~~~l~~~~i~~L~~~l~D~~~~ 1041 (1326)
...-.+|+..+-..|..+. .+..++-.+++.+++.+-..|-..-.++..+...... +.--++|.|.+-++|+||.
T Consensus 46 ~~~kk~alKkvIa~mt~G~--DvS~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pe---lalLaINtl~KDl~d~Np~ 120 (746)
T PTZ00429 46 SYRKKAAVKRIIANMTMGR--DVSYLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPE---KALLAVNTFLQDTTNSSPV 120 (746)
T ss_pred HHHHHHHHHHHHHHHHCCC--CchHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChH---HHHHHHHHHHHHcCCCCHH
Confidence 4555788887888777654 5777888888888899888888888888887653322 2223589999999999999
Q ss_pred HHHHHhhhccCCcchhhhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCcCCChH
Q 000730 1042 VRGLCLRGLVQIPSIHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVK 1121 (1326)
Q Consensus 1042 VR~lsLrGLgnl~~~~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~l~~~lrpffede~~~ 1121 (1326)
||.+|||.|++|...+ ..+.+++++..++.|.+.-|+-.|..++.++.+.-.+..... .+..++..+..|.++.
T Consensus 121 IRaLALRtLs~Ir~~~---i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~---~~~~~L~~LL~D~dp~ 194 (746)
T PTZ00429 121 VRALAVRTMMCIRVSS---VLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQ---DFKKDLVELLNDNNPV 194 (746)
T ss_pred HHHHHHHHHHcCCcHH---HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCccccccc---chHHHHHHHhcCCCcc
Confidence 9999999999998643 457789999999999999999999999999987533211111 1223444568899999
Q ss_pred HHHHHHHHHHHhhhcCCC-----------------cchHH------------------HHHHHHhhhhHHHHhccCCChh
Q 000730 1122 MRRNAFAAFGALSNFGVG-----------------SQREA------------------FLEQIHAMLPRLILHIYDDDLS 1166 (1326)
Q Consensus 1122 vR~aAi~LfG~L~~~~~~-----------------~~~~~------------------~~eQv~~~LvpLLlHL~D~~~~ 1166 (1326)
|.++|+.++-++...+.. ...++ -.+.+...+ +-+|+-.|+.
T Consensus 195 Vv~nAl~aL~eI~~~~~~~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~e~~~il~~l---~~~Lq~~N~A 271 (746)
T PTZ00429 195 VASNAAAIVCEVNDYGSEKIESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSDKESAETLLTRV---LPRMSHQNPA 271 (746)
T ss_pred HHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCcHHHHHHHHHH---HHHhcCCCHH
Confidence 999999988777542110 00011 112233334 4445557899
Q ss_pred HHHHHHHHHHhhchhhhh-hhhhhhcc------ccCCCCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHHhhcCCChh
Q 000730 1167 VRQACRNTLKQVAPFMEI-GVYGIFNS------HCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPI 1239 (1326)
Q Consensus 1167 V~~ack~tL~~~a~lL~~-~l~~lf~~------~~~~~~~~l~~~~f~~~i~k~L~~~~~~~~~~~l~~~l~y~kS~~~~ 1239 (1326)
|+-+|-.++....+...- ....++.+ .....+....|- .++. ...+.+.+|+.+..++..-.-.+++|..
T Consensus 272 VVl~Aik~il~l~~~~~~~~~~~~~~rl~~pLv~L~ss~~eiqyv-aLr~-I~~i~~~~P~lf~~~~~~Ff~~~~Dp~y- 348 (746)
T PTZ00429 272 VVMGAIKVVANLASRCSQELIERCTVRVNTALLTLSRRDAETQYI-VCKN-IHALLVIFPNLLRTNLDSFYVRYSDPPF- 348 (746)
T ss_pred HHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHHHhhCCCccHHHH-HHHH-HHHHHHHCHHHHHHHHHhhhcccCCcHH-
Confidence 999998898888765322 11221111 001122334442 3333 3677778888777765554444455553
Q ss_pred HHHHHHHHHhhhhccCchhhhhhccHHHHHHHHHHHhccCCChhHHHHHHHHHHHHH-HHcc
Q 000730 1240 IQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLL-KSIN 1300 (1326)
Q Consensus 1240 IR~aA~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~-k~~~ 1300 (1326)
||..+.-.+-.++... +.+.+++-|..+ ..|.|+.+++.|.+|+|.+. |+.+
T Consensus 349 IK~~KLeIL~~Lane~--------Nv~~IL~EL~eY-a~d~D~ef~r~aIrAIg~lA~k~~~ 401 (746)
T PTZ00429 349 VKLEKLRLLLKLVTPS--------VAPEILKELAEY-ASGVDMVFVVEVVRAIASLAIKVDS 401 (746)
T ss_pred HHHHHHHHHHHHcCcc--------cHHHHHHHHHHH-hhcCCHHHHHHHHHHHHHHHHhChH
Confidence 7777765555444332 235566667773 56788888888888888876 3343
No 11
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=98.70 E-value=0.0037 Score=78.66 Aligned_cols=889 Identities=16% Similarity=0.166 Sum_probs=437.1
Q ss_pred HHHHHHHhhhcccHHHHHHHHHHHHHHhhccccccCccccceeeeecccccccccccccccccccCCCCChhHHHHHHHh
Q 000730 17 LLEAVKSLLDEQNLAVQKAISELIVVMASHCYLIGPSGELFVEYLVRHCALSDQKKYVNESSKVKIGAFCPTELRAICEK 96 (1326)
Q Consensus 17 i~~~~k~~l~d~~~kVr~al~~~I~ama~~~yl~~~~g~~~i~fiv~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~c~~ 96 (1326)
+++.+-.+|.|.|-.|..--++.+.-++.+ -++.=++++|...+-. .- ...++.|.++.=
T Consensus 48 vv~~lLklL~D~ngEVQnlAVKClg~lvsK------vke~~le~~ve~L~~~---~~-----------s~keq~rdissi 107 (1233)
T KOG1824|consen 48 VVKMLLKLLEDKNGEVQNLAVKCLGPLVSK------VKEDQLETIVENLCSN---ML-----------SGKEQLRDISSI 107 (1233)
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHHhh------chHHHHHHHHHHHhhh---hc-----------cchhhhccHHHH
Confidence 444444555677777766666665555532 1333356666544411 00 123466777776
Q ss_pred HHHHHhccchh---------hhHhhHHHHhhhccCcc-CccchhhHHHHHHHHHHhhccCCCcccccccCCCCCCCHHHH
Q 000730 97 GLLLLTITIPE---------MQHILWPLLLKMIIPRA-YTSAAATVCRCISELCRHRSSSSNVMLSECKARDDIPNPEEL 166 (1326)
Q Consensus 97 ~L~lltttv~~---------m~~~LWP~LL~~i~p~~-yt~al~~ick~l~~La~k~~~~~~~~~~~~~~~~~lPsp~~l 166 (1326)
+|+++-.-++. .=.-+-|.|-.++.-.+ +.++ .|-|+-.++.--+..| +...+|+ ..+
T Consensus 108 ~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai---~~e~lDil~d~lsr~g-~ll~~fh--------~~i 175 (1233)
T KOG1824|consen 108 GLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAI---KCEVLDILADVLSRFG-TLLPNFH--------LSI 175 (1233)
T ss_pred HHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhh---HHHHHHHHHHHHHhhc-ccCcchH--------HHH
Confidence 77665444431 11223344444444422 2222 2333333332222111 1222222 122
Q ss_pred HHHHHHHhcCCcc-cchhHHHHHHHHHHhCCCCCcchhhhHHhhHHHHHhhcccCCcCCCCcchHhhHHHHHHHHHHHhh
Q 000730 167 FARLVVLLHDPLA-REQQATQILMVLYYLSPLFPTNIDLFWQDEIPKMKAYVSDTEDLKLDPSYQETWDDMIINFLAESL 245 (1326)
Q Consensus 167 laRllvl~~~P~~-~~~rg~~~L~lL~~l~~~i~~~l~~~W~~~Ip~L~~~L~~~~~~~~~~~~~~~We~~Ll~fL~~sl 245 (1326)
+.=++--+++|-. -..++.-.|..|-...+ ..+...-|..|+..|.+.+.+ +--.++=..|-...+.+
T Consensus 176 l~~l~~ql~s~R~aVrKkai~~l~~la~~~~------~~ly~~li~~Ll~~L~~~~q~----~~~rt~Iq~l~~i~r~a- 244 (1233)
T KOG1824|consen 176 LKCLLPQLQSPRLAVRKKAITALGHLASSCN------RDLYVELIEHLLKGLSNRTQM----SATRTYIQCLAAICRQA- 244 (1233)
T ss_pred HHHHhhcccChHHHHHHHHHHHHHHHHHhcC------HHHHHHHHHHHHhccCCCCch----HHHHHHHHHHHHHHHHh-
Confidence 2222222333322 12355555555554444 346777888888888766521 11123333333333332
Q ss_pred hccccCcHHHHHHH---HHHhhhccCC-CChhhHHHHHHHHHHHHHhcCCh--hHHHHHHHHHHHh----cccCCCc---
Q 000730 246 DVVQETDWLISLGN---AFTEQYVLYT-PDDDHSALLHRCLGILLQKVADR--NYVCDKIDWMYKQ----ANIAIPT--- 312 (1326)
Q Consensus 246 ~~i~d~~W~~~L~~---el~~q~~~y~-~~~~eK~fL~k~lG~~L~~~~~~--~~V~~~L~~ll~~----~~~~~~~--- 312 (1326)
+..+..++.. .+.+.-..-+ ++++-+-+..+.+|..|..|... -++.+-+..+++- +||....
T Consensus 245 ----g~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~ei~p~~pei~~l~l~yisYDPNy~yd~~eD 320 (1233)
T KOG1824|consen 245 ----GHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPKEILPHVPEIINLCLSYISYDPNYNYDTEED 320 (1233)
T ss_pred ----cchhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhhhcccchHHHHHHHHHhccCCCCCCCCccc
Confidence 2222222222 1222111112 34455677888888888877432 1222222233221 1222211
Q ss_pred ---------------------------chhhHHHHHHHHhhhcHHHHHHHHHHHHhhhccccchhhhhhcccccccchhH
Q 000730 313 ---------------------------NRLGLAKAMGLVAASHLDAVLEMLKGILDNIGQSLFQRLLSFFSNSYRMEESD 365 (1326)
Q Consensus 313 ---------------------------ereG~A~~~G~~A~~Hld~vL~~L~~~~~~~~~~~~~~~l~~~k~~~~~~e~~ 365 (1326)
-|..-|+|+--.-++|.+-+.+..+..+- ...+-||+|- |
T Consensus 321 ed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsSR~E~L~~~~q~l~p--------~lI~RfkERE-----E 387 (1233)
T KOG1824|consen 321 EDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISSRLEMLPDFYQTLGP--------ALISRFKERE-----E 387 (1233)
T ss_pred hhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHhccHHHHHHHHHHhCH--------HHHHHHHHHh-----h
Confidence 25677888888888888888777766654 2345566662 4
Q ss_pred HHHHHHHHHHHHHHhcCChhhHHHHHHHhhHhHHHHhhhhcCchhHHHHHHHHHHHHHHHHhhhhhcCCCcCCCCHHHHH
Q 000730 366 DIHAALALMYGYAAKYAPSTVIEARIDALVGTNMLSRLLHVRHHTAKQAVITAIDLLGRAVINAAENGASFPLKKRDQLL 445 (1326)
Q Consensus 366 ~~ks~l~l~yG~va~~ap~~~il~~ve~~I~~~i~~~f~~~kd~~~K~a~l~si~~i~~av~~~~~~~~~f~f~~k~eLl 445 (1326)
.+|+-++-.|=..-.+.++- ++..-.+.-+.+ ..-++-.-.+-+.+-.|.++|++
T Consensus 388 nVk~dvf~~yi~ll~qt~~~-----~~~~~d~d~~e~---~g~~s~~~~L~~~~~~iVkai~~----------------- 442 (1233)
T KOG1824|consen 388 NVKADVFHAYIALLKQTRPV-----IEVLADNDAMEQ---GGTPSDLSMLSDQVPLIVKAIQK----------------- 442 (1233)
T ss_pred hHHHHHHHHHHHHHHcCCCC-----cccccCchhhhc---cCCccchHHHHhhhHHHHHHHHH-----------------
Confidence 68888877776665555531 110000000000 00001112233334444444433
Q ss_pred HHHHHHhccCCCCCCCCchhhhHhHHHHHHHHhhcccccCCCCChhHHHHHHHHhhhccccCCCCcccHHHHHHHHHHHH
Q 000730 446 DYILTLMGREENDSFADSSIELLHTQALALSACTTLVTVEPKLTIETRNHVMKATLGFFALPNDPIDVVNPLIDNLITLL 525 (1326)
Q Consensus 446 ~~l~~li~~ep~~~l~s~~~~l~~vr~~am~a~t~L~~L~P~l~~e~~~~ll~~c~~v~~lp~~~~~l~~~~~~al~~lL 525 (1326)
.++ | ++ .+ +||.++..++.|+..-|-.-.+....++.... |.+|. .+..-+--+++|.-+-
T Consensus 443 -----qlr-~--ks--~k------t~~~cf~lL~eli~~lp~~l~~~~~slvpgI~--~~l~D-kSsss~~ki~~L~fl~ 503 (1233)
T KOG1824|consen 443 -----QLR-E--KS--VK------TRQGCFLLLTELINVLPGALAQHIPSLVPGII--YSLND-KSSSSNLKIDALVFLY 503 (1233)
T ss_pred -----HHh-h--cc--cc------chhhHHHHHHHHHHhCcchhhhcccccchhhh--hhcCC-ccchHHHHHHHHHHHH
Confidence 222 1 11 22 78888888888887777655444444443222 23331 1245566688888776
Q ss_pred HHHhhhcCCCCcccHHHHHHHHHHHHHHhcChhH----HHhhHHHHHHHHHHHHHHhhhhcccccCCCCCCccchhhhhh
Q 000730 526 CAILLTSGEDGRSRADQLLHILRQIDQYVSSPVE----YQRRRSCLAVYEMLLKFRTLCVIGYCALGCHGSCTHIKQIDR 601 (1326)
Q Consensus 526 ~~ll~~~~~d~~~~~~~L~~~l~~l~pwl~S~~~----~eR~RA~~~~~~lL~~~~~~~~~~~c~~~~~~~~~~~~~~~~ 601 (1326)
..+...+ |+.++.+++.|.|-+.-... .--..|+..+..+.++-+.
T Consensus 504 ~~L~s~~-------p~~fhp~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirp----------------------- 553 (1233)
T KOG1824|consen 504 SALISHP-------PEVFHPHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVIRP----------------------- 553 (1233)
T ss_pred HHHhcCC-------hhhcccchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhcc-----------------------
Confidence 6666654 57777777777655521111 1112233333333332221
Q ss_pred hhhccCCCCCCcccCCchhhhhhhhHHHH--hhccccCCChhHHHHHHHHHHHHHHHHhhCCCCCCCCCCcchhhhhhhh
Q 000730 602 AVLGNFSNLPSAYVLPSREALCLGNRVIM--YLPRCADTDSEVRKISAQILDQLFSISLSLPRPVGSSSGIDLELSYGAL 679 (1326)
Q Consensus 602 ~~~~~~~~~ps~f~~~~~~f~~lG~Lvg~--l~prC~D~~~~iR~~A~~~i~~Ll~I~l~~~~~~~~~~~~~~~~~~~~l 679 (1326)
...|+.|..+| ..|.+..- =-..-.|.|.+||..|+.||..+..--. - .- ..+. ...|
T Consensus 554 ------l~~~~~~d~~~----~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fg--D----~l---~~eL-~~~L 613 (1233)
T KOG1824|consen 554 ------LQPPSSFDASP----YVKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFG--D----FL---GNEL-PRTL 613 (1233)
T ss_pred ------cCCCccCCCCh----hHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHh--h----hh---hhhh-HHHH
Confidence 11223333322 33433322 1235689999999999999998754311 0 00 0000 0111
Q ss_pred hhcHHHHHHhccCCCCCh-hHHHHHHHHHHHccCC-hhHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHhhhccccccc
Q 000730 680 SSLEDVIAILRSDASIDP-SEVFNRIVSSVCILLT-KDELVATLHSCTTAICDRTKQSAEGAIQAVVEFVTKRGNELSET 757 (1326)
Q Consensus 680 ~~l~~~~~~l~~~~~~~~-~~~~~~i~~~i~~~L~-~~el~~ll~~ll~~L~d~~~~~~~~A~~~L~~~l~~rg~~L~e~ 757 (1326)
.. +.+++.++.+.-+ ..-+..|+-+- -.++ ...++..+..+..=++-.+.....+.-..++.+++..|..+
T Consensus 614 ~i---l~eRl~nEiTRl~AvkAlt~Ia~S~-l~i~l~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~--- 686 (1233)
T KOG1824|consen 614 PI---LLERLGNEITRLTAVKALTLIAMSP-LDIDLSPVLTEILPELASFLRKNQRALRLATLTALDKLVKNYSDSI--- 686 (1233)
T ss_pred HH---HHHHHhchhHHHHHHHHHHHHHhcc-ceeehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---
Confidence 11 1122322110000 00011222211 1222 23344444444444444444455666778999999999888
Q ss_pred chhhHHHHHHHHHhhcCcHHHHHHHHHHHHHHh---hccCchhHHHHHHhhhcccchhhhhccccCCCCchhHHHHhhcC
Q 000730 758 DVSRTTQSLLSAAVHITDKHLRLETLGAISCLA---ENTNSKIVFNEVLATAGKDIVTKDISRLRGGWPMQDAFHAFSQH 834 (1326)
Q Consensus 758 ~V~~I~~~I~~~l~~i~~~~~r~~~l~ai~~La---~~h~~~vV~~~Ll~~~~~~~~~~~~~~L~~~lP~d~~W~aLa~d 834 (1326)
=++..+.+..+++..-.++-++.+..|+..|+ ...+..+
T Consensus 687 -~~~~~e~vL~el~~Lisesdlhvt~~a~~~L~tl~~~~ps~l------------------------------------- 728 (1233)
T KOG1824|consen 687 -PAELLEAVLVELPPLISESDLHVTQLAVAFLTTLAIIQPSSL------------------------------------- 728 (1233)
T ss_pred -cHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcccHHH-------------------------------------
Confidence 35677888888887776666665555555543 3332211
Q ss_pred cccHHHHHHHHHHHHccCCCccCCCccCCCCCCCCCCCccchHHHHHHHHHHHHHhcCCcchHHHHHHhhHHH-HHHHHH
Q 000730 835 AVLSFLFLEHLISALNQTPFVKGDMEKGDYSSHSADTWIDDDILQAAILALTAFFRGGGKVGKKAVEKSYAPV-LAALTL 913 (1326)
Q Consensus 835 ~~l~~~vL~~LL~~L~~~p~~~e~~~~~~~~~~~~~~~~~~~~~laA~~aL~Ell~~~~~~~~~av~~~fp~L-f~aLL~ 913 (1326)
.....++|+.++..++..-. +..|..++-.+|. ..|...+|.+ +.-|+.
T Consensus 729 ~~~~~~iL~~ii~ll~Spll-----------------------qg~al~~~l~~f~-------alV~t~~~~l~y~~l~s 778 (1233)
T KOG1824|consen 729 LKISNPILDEIIRLLRSPLL-----------------------QGGALSALLLFFQ-------ALVITKEPDLDYISLLS 778 (1233)
T ss_pred HHHhhhhHHHHHHHhhCccc-----------------------cchHHHHHHHHHH-------HHHhcCCCCccHHHHHH
Confidence 12345677777765543322 1223444433333 3344444443 222221
Q ss_pred HhhhcccCCCCCCCChHHHHHHHHHHHHHhhcchHHHHHHHhcCCCCChhhHHHHHHHHHHH---HhhcCchhHHHHHHH
Q 000730 914 QLGSCHGLASSGQHEPLRAILTSFQAFCECVGDLEMRKILARDGEQNDKEKWINLIGDVAGC---VSIKRPKEVQTICLI 990 (1326)
Q Consensus 914 ql~~~~~~~~~~~~~P~~~aleAlk~ll~~~g~~~~~~~L~~~g~W~~~e~~~~gV~lLAr~---m~~~~~~~~~~i~~~ 990 (1326)
- +.+.-++.+.. ..|-++-.-+|+| +....+..-+.+...
T Consensus 779 ~--------------------------lt~PV~~~~~~-----------~l~kqa~~siA~cvA~Lt~~~~~~s~s~a~k 821 (1233)
T KOG1824|consen 779 L--------------------------LTAPVYEQVTD-----------GLHKQAYYSIAKCVAALTCACPQKSKSLATK 821 (1233)
T ss_pred H--------------------------HcCCccccccc-----------chhHHHHHHHHHHHHHHHHhccccchhHHHH
Confidence 1 22222222211 1222333334444 334445567788888
Q ss_pred Hhhhhccc--cccchHHHHHHHHHhhhcCCc--hhhHHHHHHHHHHhhcCCCChhHHHHHhhhccCCcchhhhhhHHHHH
Q 000730 991 LTKSINRQ--QRFQREAAAAALSEFVRYSGG--FDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSIHIHQYATQVL 1066 (1326)
Q Consensus 991 L~~~L~s~--~~~~Ri~a~aflsELl~~~~~--~~~l~~~~i~~L~~~l~D~~~~VR~lsLrGLgnl~~~~v~~~~~~lL 1066 (1326)
+..-++++ ++.-|+.|+..|.|+-+.-.. ...+ -....+.++.|+..|+..|-.+||+++.|....|.|-++
T Consensus 822 l~~~~~s~~s~~~ikvfa~LslGElgr~~~~s~~~e~----~~~iieaf~sp~edvksAAs~ALGsl~vgnl~~yLpfil 897 (1233)
T KOG1824|consen 822 LIQDLQSPKSSDSIKVFALLSLGELGRRKDLSPQNEL----KDTIIEAFNSPSEDVKSAASYALGSLAVGNLPKYLPFIL 897 (1233)
T ss_pred HHHHHhCCCCchhHHHHHHhhhhhhccCCCCCcchhh----HHHHHHHcCCChHHHHHHHHHHhhhhhcCchHhHHHHHH
Confidence 88877754 456678888888898876432 1222 236778889999999999999999999987777766655
Q ss_pred HHHHhhccCCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCcCCChHHHHHHHHHHHHhhh-----------
Q 000730 1067 SVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSN----------- 1135 (1326)
Q Consensus 1067 ~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~l~~~lrpffede~~~vR~aAi~LfG~L~~----------- 1135 (1326)
.-+-+ +..-..--+..|..++....-....+...+|=-.+..--|...+..|..-.+.+|.|+-
T Consensus 898 ~qi~s-----qpk~QyLLLhSlkevi~~~svd~~~~~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~l~epesLlpkL~ 972 (1233)
T KOG1824|consen 898 EQIES-----QPKRQYLLLHSLKEVIVSASVDGLKPYVEKIWALLFKHCECAEEGTRNVVAECLGKLVLIEPESLLPKLK 972 (1233)
T ss_pred HHHhc-----chHhHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHhcccchhhhHHHHHHHhhhHHhCChHHHHHHHH
Confidence 44322 22222223333444443333222233333333333333334444445544455554442
Q ss_pred -------------------cCCCcchHHHHHHHHhhhhHHHHhccCCChhHHHHHHHHHHhhch
Q 000730 1136 -------------------FGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAP 1180 (1326)
Q Consensus 1136 -------------------~~~~~~~~~~~eQv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~ 1180 (1326)
|.-..+.+++..-+.+.+-..+.-++|++..|++++--+|...++
T Consensus 973 ~~~~S~a~~~rs~vvsavKfsisd~p~~id~~lk~~ig~fl~~~~dpDl~VrrvaLvv~nSaah 1036 (1233)
T KOG1824|consen 973 LLLRSEASNTRSSVVSAVKFSISDQPQPIDPLLKQQIGDFLKLLRDPDLEVRRVALVVLNSAAH 1036 (1233)
T ss_pred HHhcCCCcchhhhhhheeeeeecCCCCccCHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHc
Confidence 222223334444455677778888999999999999888887773
No 12
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=98.63 E-value=4.6e-05 Score=104.59 Aligned_cols=270 Identities=13% Similarity=0.103 Sum_probs=194.7
Q ss_pred HHHHHhhhhccccccchHHHHHHHHHhhhcCCc-hhhHHHH-HHHHHHhhcCCCChhHHHHHhhhccCCcch--hhhhhH
Q 000730 987 ICLILTKSINRQQRFQREAAAAALSEFVRYSGG-FDSLLEQ-MVEALCRHVSDESPTVRGLCLRGLVQIPSI--HIHQYA 1062 (1326)
Q Consensus 987 i~~~L~~~L~s~~~~~Ri~a~aflsELl~~~~~-~~~l~~~-~i~~L~~~l~D~~~~VR~lsLrGLgnl~~~--~v~~~~ 1062 (1326)
.+..|+.+|.+++...+..|+..+.-+-..... ...+.+. .+..|.+-+..+++.+|.-|+-.|+|++.+ +.+...
T Consensus 447 gIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV 526 (2102)
T PLN03200 447 GVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACV 526 (2102)
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHH
Confidence 467788888888888888887777766543322 2222222 566777778899999999999999999864 333323
Q ss_pred --HHHHHHHHhhccCCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCcCCChHHHHHHHHHHHHhhhcCCCc
Q 000730 1063 --TQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGS 1140 (1326)
Q Consensus 1063 --~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~l~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~ 1140 (1326)
..+++.++..|.+.+..+..+|..+|.+++..-+...+. .+..++..+++.+...+++.+|.+...+.+.
T Consensus 527 ~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~--------~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~ 598 (2102)
T PLN03200 527 ESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATIS--------QLTALLLGDLPESKVHVLDVLGHVLSVASLE 598 (2102)
T ss_pred HHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHH--------HHHHHhcCCChhHHHHHHHHHHHHHhhcchh
Confidence 357889999999988999999999999998875544332 2334588888999999999999998754432
Q ss_pred chHHHHHHH---HhhhhHHHHhccCCChhHHHHHHHHHHhhchhhhhhhhhhhccccCCCCCCCChHHHHHHHHHHHHHh
Q 000730 1141 QREAFLEQI---HAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEIGVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQH 1217 (1326)
Q Consensus 1141 ~~~~~~eQv---~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL~~~l~~lf~~~~~~~~~~l~~~~f~~~i~k~L~~~ 1217 (1326)
.+..+. .+++.+|.--|+.+++.+.+.+..++..++.- . .++|..++..
T Consensus 599 ---d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~--~-----------------------~d~~~avv~a 650 (2102)
T PLN03200 599 ---DLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSS--R-----------------------QDLCESLATD 650 (2102)
T ss_pred ---HHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcC--C-----------------------hHHHHHHHHc
Confidence 233332 36777777777788999999888888776641 0 0112222221
Q ss_pred CcchHHHHHHHHHHhhcCCChhHHHHHHHHHhhhhccCchhhhhhccHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHH
Q 000730 1218 FPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLLK 1297 (1326)
Q Consensus 1218 ~~~~~~~~l~~~l~y~kS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k 1297 (1326)
. -+-..+..+++....+|..|++-+|.+......+++..+-...++..|.. |++++|+.|+..|+.||..+.+
T Consensus 651 g------aIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~-LL~~~d~~v~e~Al~ALanLl~ 723 (2102)
T PLN03200 651 E------IINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIK-LAKSSSIEVAEQAVCALANLLS 723 (2102)
T ss_pred C------CHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHH-HHhCCChHHHHHHHHHHHHHHc
Confidence 1 13344667788899999999999999987666555444333457888999 8999999999999999999986
Q ss_pred Hc
Q 000730 1298 SI 1299 (1326)
Q Consensus 1298 ~~ 1299 (1326)
..
T Consensus 724 ~~ 725 (2102)
T PLN03200 724 DP 725 (2102)
T ss_pred Cc
Confidence 54
No 13
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.57 E-value=7e-06 Score=102.86 Aligned_cols=307 Identities=18% Similarity=0.220 Sum_probs=201.6
Q ss_pred ChhhHHHHHHHHHHHHhhcCchhHHHHHHHHhhhhccccccchHHHHHHHHHhhhcCCchhhHHHHHHHHHHhhcCCCCh
Q 000730 961 DKEKWINLIGDVAGCVSIKRPKEVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESP 1040 (1326)
Q Consensus 961 ~~e~~~~gV~lLAr~m~~~~~~~~~~i~~~L~~~L~s~~~~~Ri~a~aflsELl~~~~~~~~l~~~~i~~L~~~l~D~~~ 1040 (1326)
+...-.+++..|...+..+. .+...+-.++.++.+.+-..|-.+-.+++.+...... +.--++|.+.+-+.||||
T Consensus 19 ~~~~~~~~l~kli~~~~~G~--~~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~---~~~l~~n~l~kdl~~~n~ 93 (526)
T PF01602_consen 19 DISKKKEALKKLIYLMMLGY--DISFLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPE---LLILIINSLQKDLNSPNP 93 (526)
T ss_dssp HHHHHHHHHHHHHHHHHTT-----GSTHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHH---HHHHHHHHHHHHHCSSSH
T ss_pred CHHHHHHHHHHHHHHHHcCC--CCchHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchh---HHHHHHHHHHHhhcCCCH
Confidence 45566677777777666554 3557777788888888888899999899998876433 223368999999999999
Q ss_pred hHHHHHhhhccCCcchhhhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCcCCCh
Q 000730 1041 TVRGLCLRGLVQIPSIHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNV 1120 (1326)
Q Consensus 1041 ~VR~lsLrGLgnl~~~~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~l~~~lrpffede~~ 1120 (1326)
.+|.+|||.|+++....+ .+.+++.+...+.|.++.|+..|+.++.++... +++.+... +...+..++.|.++
T Consensus 94 ~~~~lAL~~l~~i~~~~~---~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~-~p~~~~~~---~~~~l~~lL~d~~~ 166 (526)
T PF01602_consen 94 YIRGLALRTLSNIRTPEM---AEPLIPDVIKLLSDPSPYVRKKAALALLKIYRK-DPDLVEDE---LIPKLKQLLSDKDP 166 (526)
T ss_dssp HHHHHHHHHHHHH-SHHH---HHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH-CHCCHHGG---HHHHHHHHTTHSSH
T ss_pred HHHHHHHhhhhhhcccch---hhHHHHHHHHHhcCCchHHHHHHHHHHHHHhcc-CHHHHHHH---HHHHHhhhccCCcc
Confidence 999999999999986543 577899999999999999999999999999987 33333331 34566778899999
Q ss_pred HHHHHHHHHHHHhhhcCCCcchH--HHHHHHHhhhhHHHHhccCCChhHHHHHHHHHHhhchhhhh-h-----hhhhhcc
Q 000730 1121 KMRRNAFAAFGALSNFGVGSQRE--AFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEI-G-----VYGIFNS 1192 (1326)
Q Consensus 1121 ~vR~aAi~LfG~L~~~~~~~~~~--~~~eQv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL~~-~-----l~~lf~~ 1192 (1326)
.|+.+|+.++..+ + ..... .+..++...+..++ .+++|-+...+-..|...++.-.. . +..+...
T Consensus 167 ~V~~~a~~~l~~i-~---~~~~~~~~~~~~~~~~L~~~l---~~~~~~~q~~il~~l~~~~~~~~~~~~~~~~i~~l~~~ 239 (526)
T PF01602_consen 167 SVVSAALSLLSEI-K---CNDDSYKSLIPKLIRILCQLL---SDPDPWLQIKILRLLRRYAPMEPEDADKNRIIEPLLNL 239 (526)
T ss_dssp HHHHHHHHHHHHH-H---CTHHHHTTHHHHHHHHHHHHH---TCCSHHHHHHHHHHHTTSTSSSHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHH-c---cCcchhhhhHHHHHHHhhhcc---cccchHHHHHHHHHHHhcccCChhhhhHHHHHHHHHHH
Confidence 9999999999999 2 11111 23333333333322 788888877777777777664333 2 1111111
Q ss_pred ccCCCCCCCChHHHHHHHHHHHHHhCcc--hHHHHHHHHHHhhcCCChhHHHHHHHHHhhhhccCchhhhhhccHHHHHH
Q 000730 1193 HCFNSDHRSDYETFVRDLTRQFVQHFPS--RIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFG 1270 (1326)
Q Consensus 1193 ~~~~~~~~l~~~~f~~~i~k~L~~~~~~--~~~~~l~~~l~y~kS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~l~~ 1270 (1326)
+. ......+-+.++.+..-.+. .+...+.....++.|+.+++|-.|..-+..+....+..-. .....
T Consensus 240 --l~----s~~~~V~~e~~~~i~~l~~~~~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~v~---~~~~~-- 308 (526)
T PF01602_consen 240 --LQ----SSSPSVVYEAIRLIIKLSPSPELLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNPPAVF---NQSLI-- 308 (526)
T ss_dssp --HH----HHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHHHG---THHHH--
T ss_pred --hh----ccccHHHHHHHHHHHHhhcchHHHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccchhhh---hhhhh--
Confidence 00 01133444555655553333 3466677777788888888998888777777666522111 11111
Q ss_pred HHHHHhccCCChhHHHHHHHHHHHHHHHc
Q 000730 1271 LLVVKLSQSADAIVRATCSSSLGWLLKSI 1299 (1326)
Q Consensus 1271 ~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k~~ 1299 (1326)
+.- ++.|+|+.||..|.+.|..+....
T Consensus 309 -~~~-l~~~~d~~Ir~~~l~lL~~l~~~~ 335 (526)
T PF01602_consen 309 -LFF-LLYDDDPSIRKKALDLLYKLANES 335 (526)
T ss_dssp -HHH-HHCSSSHHHHHHHHHHHHHH--HH
T ss_pred -hhe-ecCCCChhHHHHHHHHHhhccccc
Confidence 222 455777778777777766665433
No 14
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=98.45 E-value=0.016 Score=73.33 Aligned_cols=322 Identities=15% Similarity=0.106 Sum_probs=177.0
Q ss_pred hhHHHHHHHHHHHHhhc-CchhHHHHHHHHhhhhccccccchHHHHHHHHHhhhcCCc--hhhHHHHHHHHHHhhcCCCC
Q 000730 963 EKWINLIGDVAGCVSIK-RPKEVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGG--FDSLLEQMVEALCRHVSDES 1039 (1326)
Q Consensus 963 e~~~~gV~lLAr~m~~~-~~~~~~~i~~~L~~~L~s~~~~~Ri~a~aflsELl~~~~~--~~~l~~~~i~~L~~~l~D~~ 1039 (1326)
-+-..+.+++|.+-.+- .-+....++..+..+++.....-|.+...++-+|+.+... ..++.+.++..+..-+.+++
T Consensus 627 l~AvkAlt~Ia~S~l~i~l~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~~Lisesd 706 (1233)
T KOG1824|consen 627 LTAVKALTLIAMSPLDIDLSPVLTEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPAELLEAVLVELPPLISESD 706 (1233)
T ss_pred HHHHHHHHHHHhccceeehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhhhHHH
Confidence 33445556666543332 2456777777777777777777777777777777775422 34555666666666666666
Q ss_pred hhHHHHHhhhccCCcch---hhhhhHHHHH-----------------HHHHhhc------------------------cC
Q 000730 1040 PTVRGLCLRGLVQIPSI---HIHQYATQVL-----------------SVILALL------------------------DD 1075 (1326)
Q Consensus 1040 ~~VR~lsLrGLgnl~~~---~v~~~~~~lL-----------------~all~~L------------------------~d 1075 (1326)
.-|-.+++-=|..++.. -.-+....+| .+++..+ ++
T Consensus 707 lhvt~~a~~~L~tl~~~~ps~l~~~~~~iL~~ii~ll~Spllqg~al~~~l~~f~alV~t~~~~l~y~~l~s~lt~PV~~ 786 (1233)
T KOG1824|consen 707 LHVTQLAVAFLTTLAIIQPSSLLKISNPILDEIIRLLRSPLLQGGALSALLLFFQALVITKEPDLDYISLLSLLTAPVYE 786 (1233)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHhhhhHHHHHHHhhCccccchHHHHHHHHHHHHHhcCCCCccHHHHHHHHcCCccc
Confidence 66665555533322211 0011111122 2222211 11
Q ss_pred CC-hhHHHHHHHHHHHHhccCC---cCCcchhHHhHHhhhcCcCcCCChHHHHHHHHHHHHhhhcCCCcchHHHHHHHHh
Q 000730 1076 LD-ESVQLTAVSCLLTILKSSS---KDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHA 1151 (1326)
Q Consensus 1076 ~d-~~V~leAm~~L~~lL~~l~---~~~~~~~l~~l~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~ 1151 (1326)
.. +.+--.|...++++...+. ++...++...+...++. .+.++.+|..|+--||.+++...-.....+..
T Consensus 787 ~~~~~l~kqa~~siA~cvA~Lt~~~~~~s~s~a~kl~~~~~s--~~s~~~ikvfa~LslGElgr~~~~s~~~e~~~---- 860 (1233)
T KOG1824|consen 787 QVTDGLHKQAYYSIAKCVAALTCACPQKSKSLATKLIQDLQS--PKSSDSIKVFALLSLGELGRRKDLSPQNELKD---- 860 (1233)
T ss_pred ccccchhHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHhC--CCCchhHHHHHHhhhhhhccCCCCCcchhhHH----
Confidence 10 0122333333444433222 23344555556555555 57789999999999999998433322223322
Q ss_pred hhhHHHHhccCCChhHHHHHHHHHHhhch-hhhhhhhhhhccccCCCC---------------CCCC-hHHHHHHHHHHH
Q 000730 1152 MLPRLILHIYDDDLSVRQACRNTLKQVAP-FMEIGVYGIFNSHCFNSD---------------HRSD-YETFVRDLTRQF 1214 (1326)
Q Consensus 1152 ~LvpLLlHL~D~~~~V~~ack~tL~~~a~-lL~~~l~~lf~~~~~~~~---------------~~l~-~~~f~~~i~k~L 1214 (1326)
-.+-.++-++.+|..|+.+||+.++. .|.-.+..++..-.-+.. .+.+ +...+.+||..|
T Consensus 861 ---~iieaf~sp~edvksAAs~ALGsl~vgnl~~yLpfil~qi~sqpk~QyLLLhSlkevi~~~svd~~~~~v~~IW~lL 937 (1233)
T KOG1824|consen 861 ---TIIEAFNSPSEDVKSAASYALGSLAVGNLPKYLPFILEQIESQPKRQYLLLHSLKEVIVSASVDGLKPYVEKIWALL 937 (1233)
T ss_pred ---HHHHHcCCChHHHHHHHHHHhhhhhcCchHhHHHHHHHHHhcchHhHHHHHHHHHHHHHHhccchhhhhHHHHHHHH
Confidence 44566788999999999999999985 222211111111000000 0111 123445666666
Q ss_pred HHhCcch---HH----------------HHHHHHHHhhcCCChhHHHHHHHHHhhhhccCchhhhhhccHHHHHHHHHHH
Q 000730 1215 VQHFPSR---ID----------------SYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVK 1275 (1326)
Q Consensus 1215 ~~~~~~~---~~----------------~~l~~~l~y~kS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~ 1275 (1326)
.++..+. .. .++-..-.++.|+.+..|..++.-+-|.+..-+ +.... ...+-++.+..
T Consensus 938 ~k~cE~~eegtR~vvAECLGkL~l~epesLlpkL~~~~~S~a~~~rs~vvsavKfsisd~p-~~id~-~lk~~ig~fl~- 1014 (1233)
T KOG1824|consen 938 FKHCECAEEGTRNVVAECLGKLVLIEPESLLPKLKLLLRSEASNTRSSVVSAVKFSISDQP-QPIDP-LLKQQIGDFLK- 1014 (1233)
T ss_pred HHhcccchhhhHHHHHHHhhhHHhCChHHHHHHHHHHhcCCCcchhhhhhheeeeeecCCC-CccCH-HHHHHHHHHHH-
Confidence 6554221 11 233333457899999999998877777765443 11111 12334556666
Q ss_pred hccCCChhHHHHHHHHHHHHH
Q 000730 1276 LSQSADAIVRATCSSSLGWLL 1296 (1326)
Q Consensus 1276 Ll~Dpdp~VR~~Aa~aL~~l~ 1296 (1326)
+.+|||+.||+.|-+++.-.-
T Consensus 1015 ~~~dpDl~VrrvaLvv~nSaa 1035 (1233)
T KOG1824|consen 1015 LLRDPDLEVRRVALVVLNSAA 1035 (1233)
T ss_pred HHhCCchhHHHHHHHHHHHHH
Confidence 799999999999999976543
No 15
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=98.37 E-value=0.00044 Score=95.38 Aligned_cols=270 Identities=12% Similarity=0.079 Sum_probs=186.6
Q ss_pred HHHHHHhhhhccccccchHHHHHHHHHhhhcCCchhhHH-H-HHHHHHHhhcCCCChhHHHHHhhhccCCcchhhhhhHH
Q 000730 986 TICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLL-E-QMVEALCRHVSDESPTVRGLCLRGLVQIPSIHIHQYAT 1063 (1326)
Q Consensus 986 ~i~~~L~~~L~s~~~~~Ri~a~aflsELl~~~~~~~~l~-~-~~i~~L~~~l~D~~~~VR~lsLrGLgnl~~~~v~~~~~ 1063 (1326)
+.+..|..+|++++...+.-|++.++.+-.++...+..+ + .++..|.+-+++.++.+|.-++.+|.|+..+.- +
T Consensus 488 GaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d----~ 563 (2102)
T PLN03200 488 GGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTAD----A 563 (2102)
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccc----h
Confidence 456677788888888888889999998876443323333 2 256667777788899999999999999975411 1
Q ss_pred HHHHHHHhhccCCChhHHHHHHHHHHHHhccCCcCCcchh---HHhHHhhhcCcCcCCChHHHHHHHHHHHHhhhcCCCc
Q 000730 1064 QVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPI---LLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGS 1140 (1326)
Q Consensus 1064 ~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~---l~~l~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~ 1140 (1326)
..++.+.+.|...+..+...++.+|++|+...+..+.... -..-...|-.+.+++++.++..|....+++....
T Consensus 564 ~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~--- 640 (2102)
T PLN03200 564 ATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSR--- 640 (2102)
T ss_pred hHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC---
Confidence 2335555667666777888889999999876554321100 0012234456788999999999999999998721
Q ss_pred chHHHHHHHH--hhhhHHHHhccCCChhHHHHHHHHHHhhchhhhhh-hhhhhccccCCCCCCCChHHHHHHHHHHHHHh
Q 000730 1141 QREAFLEQIH--AMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEIG-VYGIFNSHCFNSDHRSDYETFVRDLTRQFVQH 1217 (1326)
Q Consensus 1141 ~~~~~~eQv~--~~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL~~~-l~~lf~~~~~~~~~~l~~~~f~~~i~k~L~~~ 1217 (1326)
....+++. +.++||+-+|+..+.+|++.+..||...+.--.-. ...+...
T Consensus 641 --~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~------------------------- 693 (2102)
T PLN03200 641 --QDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAE------------------------- 693 (2102)
T ss_pred --hHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHc-------------------------
Confidence 22233332 78999999999999999999999988866421111 1111110
Q ss_pred CcchHHHHHHHHHHhhcCCChhHHHHHHHHHhhhhccCchhhhhhccHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHH
Q 000730 1218 FPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLLK 1297 (1326)
Q Consensus 1218 ~~~~~~~~l~~~l~y~kS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k 1297 (1326)
+- +.-.+..++++...++..|+.-++.+.+..+. ..++..+..+..|.+ ++++-.+.+|..|+.||..|.+
T Consensus 694 --Ga----V~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~--~~ei~~~~~I~~Lv~-lLr~G~~~~k~~Aa~AL~~L~~ 764 (2102)
T PLN03200 694 --DA----IKPLIKLAKSSSIEVAEQAVCALANLLSDPEV--AAEALAEDIILPLTR-VLREGTLEGKRNAARALAQLLK 764 (2102)
T ss_pred --CC----HHHHHHHHhCCChHHHHHHHHHHHHHHcCchH--HHHHHhcCcHHHHHH-HHHhCChHHHHHHHHHHHHHHh
Confidence 01 11123467888889999999888888887752 222334556788999 7888999999999999998884
Q ss_pred H
Q 000730 1298 S 1298 (1326)
Q Consensus 1298 ~ 1298 (1326)
.
T Consensus 765 ~ 765 (2102)
T PLN03200 765 H 765 (2102)
T ss_pred C
Confidence 3
No 16
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.36 E-value=2.6e-05 Score=93.89 Aligned_cols=207 Identities=11% Similarity=-0.003 Sum_probs=142.9
Q ss_pred HHHHHhhcCCCChhHHHHHhhhccCCcchhhhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhccCCcCCcchhHHhH
Q 000730 1028 VEALCRHVSDESPTVRGLCLRGLVQIPSIHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNL 1107 (1326)
Q Consensus 1028 i~~L~~~l~D~~~~VR~lsLrGLgnl~~~~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~l 1107 (1326)
+..|.+.+.|+++.||.-+.++||.+.. +...+.++..|.+.+..|...++.+++.... .. ..
T Consensus 88 ~~~L~~~L~d~~~~vr~aaa~ALg~i~~-------~~a~~~L~~~L~~~~p~vR~aal~al~~r~~----~~-~~----- 150 (410)
T TIGR02270 88 LRSVLAVLQAGPEGLCAGIQAALGWLGG-------RQAEPWLEPLLAASEPPGRAIGLAALGAHRH----DP-GP----- 150 (410)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhcCCc-------hHHHHHHHHHhcCCChHHHHHHHHHHHhhcc----Ch-HH-----
Confidence 6788889999999999999999999986 5667888889988888899888888777321 11 12
Q ss_pred HhhhcCcCcCCChHHHHHHHHHHHHhhhcCCCcchHHHHHHHHhhhhHHHHhccCCChhHHHHHHHHHHhhchhhhh-hh
Q 000730 1108 SVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEI-GV 1186 (1326)
Q Consensus 1108 ~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL~~-~l 1186 (1326)
.+.++++|+++.||..|+..+|.+..- ..+.+|...+.|+|+.|+.++-.++...+.--.| .+
T Consensus 151 --~L~~~L~d~d~~Vra~A~raLG~l~~~--------------~a~~~L~~al~d~~~~VR~aA~~al~~lG~~~A~~~l 214 (410)
T TIGR02270 151 --ALEAALTHEDALVRAAALRALGELPRR--------------LSESTLRLYLRDSDPEVRFAALEAGLLAGSRLAWGVC 214 (410)
T ss_pred --HHHHHhcCCCHHHHHHHHHHHHhhccc--------------cchHHHHHHHcCCCHHHHHHHHHHHHHcCCHhHHHHH
Confidence 344677899999999999999998751 1334455669999999999999999888764344 33
Q ss_pred hhhhccccCCCCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHHhhcCCChhHHHHHHHHHhhhhccCchhhhhhccHH
Q 000730 1187 YGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYT 1266 (1326)
Q Consensus 1187 ~~lf~~~~~~~~~~l~~~~f~~~i~k~L~~~~~~~~~~~l~~~l~y~kS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e 1266 (1326)
...... .| .. ....+...+..--.. ..+......++++. +|.+|+..+|.+.. .
T Consensus 215 ~~~~~~----~g-~~----~~~~l~~~lal~~~~---~a~~~L~~ll~d~~--vr~~a~~AlG~lg~------------p 268 (410)
T TIGR02270 215 RRFQVL----EG-GP----HRQRLLVLLAVAGGP---DAQAWLRELLQAAA--TRREALRAVGLVGD------------V 268 (410)
T ss_pred HHHHhc----cC-cc----HHHHHHHHHHhCCch---hHHHHHHHHhcChh--hHHHHHHHHHHcCC------------c
Confidence 332221 11 11 111222233222222 33444445677755 89999999996653 2
Q ss_pred HHHHHHHHHhccCCChhHHHHHHHHHHHHH
Q 000730 1267 QVFGLLVVKLSQSADAIVRATCSSSLGWLL 1296 (1326)
Q Consensus 1267 ~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~ 1296 (1326)
.....|+. +..|+. +|+.|.+|+..+-
T Consensus 269 ~av~~L~~-~l~d~~--~aR~A~eA~~~It 295 (410)
T TIGR02270 269 EAAPWCLE-AMREPP--WARLAGEAFSLIT 295 (410)
T ss_pred chHHHHHH-HhcCcH--HHHHHHHHHHHhh
Confidence 34556777 455554 9999999977764
No 17
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=98.33 E-value=4.1e-05 Score=92.97 Aligned_cols=302 Identities=18% Similarity=0.189 Sum_probs=198.1
Q ss_pred HHHHHHHhhhhccccccchHHHHHHHHHhhhcCCchhhHHHHHHHHHHhhcCCCChhHHHH-Hhhhcc----CCcchhhh
Q 000730 985 QTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGL-CLRGLV----QIPSIHIH 1059 (1326)
Q Consensus 985 ~~i~~~L~~~L~s~~~~~Ri~a~aflsELl~~~~~~~~l~~~~i~~L~~~l~D~~~~VR~l-sLrGLg----nl~~~~v~ 1059 (1326)
-.+...+...++++....|.-|..-++.+++.......--..++..|.+..+|-++..|+. ++.+.- +++ .-..
T Consensus 133 ~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg-~~~E 211 (569)
T KOG1242|consen 133 EYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLG-PPFE 211 (569)
T ss_pred HHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcC-CCCC
Confidence 3344445555666666777777777777777653322222347889999999987766664 333221 222 1456
Q ss_pred hhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCcCCChHHHHHHHHHHHHhhhcCCC
Q 000730 1060 QYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVG 1139 (1326)
Q Consensus 1060 ~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~l~~~lrpffede~~~vR~aAi~LfG~L~~~~~~ 1139 (1326)
.|.-.+++.++..+.|....|+-.|+.+..-++..++..++..++.++... ++++ ...=..+|+.++|.++...
T Consensus 212 Pyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~---l~~~-kWrtK~aslellg~m~~~a-- 285 (569)
T KOG1242|consen 212 PYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVKLLLPSLLGS---LLEA-KWRTKMASLELLGAMADCA-- 285 (569)
T ss_pred chHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhhHhhhhhHHH---HHHH-hhhhHHHHHHHHHHHHHhc--
Confidence 788889999999999999999999999999999999999999888876543 3333 6666789999999887622
Q ss_pred cchHHHHHHHHh-hhhHHHHhccCCChhHHHHHHHHHHhhchhhhh-hhhhhhccc--cCCCCCCCChHHHHHHHHH-HH
Q 000730 1140 SQREAFLEQIHA-MLPRLILHIYDDDLSVRQACRNTLKQVAPFMEI-GVYGIFNSH--CFNSDHRSDYETFVRDLTR-QF 1214 (1326)
Q Consensus 1140 ~~~~~~~eQv~~-~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL~~-~l~~lf~~~--~~~~~~~l~~~~f~~~i~k-~L 1214 (1326)
..-.+.-.. .++.|.--|.|..|.|+++...|+.+.+..... .+.....+. ++.+-.+ .-++-+..+.+ .+
T Consensus 286 ---p~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~~~ip~Lld~l~dp~~-~~~e~~~~L~~ttF 361 (569)
T KOG1242|consen 286 ---PKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLLDALADPSC-YTPECLDSLGATTF 361 (569)
T ss_pred ---hHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhcCccc-chHHHHHhhcceee
Confidence 122222233 344455678999999999999999999988777 554443331 1221110 00111111100 00
Q ss_pred HHhC-cchHHHHHHHHHHhhcCCChhHHHHHHHHHhhhhccCchhhhhhccHHHHHHHHHHHhccCCChhHHHHHHHHHH
Q 000730 1215 VQHF-PSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLG 1293 (1326)
Q Consensus 1215 ~~~~-~~~~~~~l~~~l~y~kS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~ 1293 (1326)
+..= +-.+...+--.-.-+......+++.++..+|.+....++...-......++.+|.. -..||+|.||..|+.|||
T Consensus 362 V~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~-~~~d~~PEvR~vaarAL~ 440 (569)
T KOG1242|consen 362 VAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKE-NLDDAVPEVRAVAARALG 440 (569)
T ss_pred eeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHH-HhcCCChhHHHHHHHHHH
Confidence 0000 01111111111112333445678889999999999997666666677899999999 799999999999999998
Q ss_pred HHHHH
Q 000730 1294 WLLKS 1298 (1326)
Q Consensus 1294 ~l~k~ 1298 (1326)
.+.|.
T Consensus 441 ~l~e~ 445 (569)
T KOG1242|consen 441 ALLER 445 (569)
T ss_pred HHHHH
Confidence 87753
No 18
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.33 E-value=8.4e-06 Score=102.14 Aligned_cols=310 Identities=18% Similarity=0.164 Sum_probs=207.8
Q ss_pred HHHHHHhhcCchhHHHHHHHHhhhhccccccchHHHHHHHHHhhhcCCchhhHHHHHHHHHHhhcCCCChhHHHHHhhhc
Q 000730 971 DVAGCVSIKRPKEVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGL 1050 (1326)
Q Consensus 971 lLAr~m~~~~~~~~~~i~~~L~~~L~s~~~~~Ri~a~aflsELl~~~~~~~~l~~~~i~~L~~~l~D~~~~VR~lsLrGL 1050 (1326)
+.+..+...++..+.-+.+.+.+-|+++++.-|..|.-+++.+- .....+.++..+.+.+.|++|.||+-|+-++
T Consensus 64 l~l~~~~~~~~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~-----~~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l 138 (526)
T PF01602_consen 64 LYLSLYLHEDPELLILIINSLQKDLNSPNPYIRGLALRTLSNIR-----TPEMAEPLIPDVIKLLSDPSPYVRKKAALAL 138 (526)
T ss_dssp HHHHHHTTTSHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH------SHHHHHHHHHHHHHHHHSSSHHHHHHHHHHH
T ss_pred HHHHHHhhcchhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhc-----ccchhhHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 33455555566668889999999999999999999999999865 2355577778888888999999999999999
Q ss_pred cCCcchhhhhhHHH-HHHHHHhhccCCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCcCCChHHHHHHHHH
Q 000730 1051 VQIPSIHIHQYATQ-VLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAA 1129 (1326)
Q Consensus 1051 gnl~~~~v~~~~~~-lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~l~~~lrpffede~~~vR~aAi~L 1129 (1326)
..+....-. ..+. +++.+...|.|.|..|+..|...+..+ ...++....++..+..++.....+.++-++...+.+
T Consensus 139 ~~i~~~~p~-~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i--~~~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~ 215 (526)
T PF01602_consen 139 LKIYRKDPD-LVEDELIPKLKQLLSDKDPSVVSAALSLLSEI--KCNDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRL 215 (526)
T ss_dssp HHHHHHCHC-CHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH--HCTHHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHH
T ss_pred HHHhccCHH-HHHHHHHHHHhhhccCCcchhHHHHHHHHHHH--ccCcchhhhhHHHHHHHhhhcccccchHHHHHHHHH
Confidence 988643111 1122 688888899999999999999999999 222222225566666677766788899999999999
Q ss_pred HHHhhhcCCCcchHHHHHHHHhhhhHHHHhccCCChhHHHHHHHHHHhhchhhh-h-hhhhhhccccCCCCCCCChHHHH
Q 000730 1130 FGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFME-I-GVYGIFNSHCFNSDHRSDYETFV 1207 (1326)
Q Consensus 1130 fG~L~~~~~~~~~~~~~eQv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL~-~-~l~~lf~~~~~~~~~~l~~~~f~ 1207 (1326)
++.++.. .....-. ...+.++.-.++..++.|+-.|-.++..+.+.-. . .....+.+..-..+..+.| +.
T Consensus 216 l~~~~~~---~~~~~~~---~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~~~~~~~~~L~~lL~s~~~nvr~--~~ 287 (526)
T PF01602_consen 216 LRRYAPM---EPEDADK---NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPELLQKAINPLIKLLSSSDPNVRY--IA 287 (526)
T ss_dssp HTTSTSS---SHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHTSSSHHHHH--HH
T ss_pred HHhcccC---ChhhhhH---HHHHHHHHHHhhccccHHHHHHHHHHHHhhcchHHHHhhHHHHHHHhhcccchheh--hH
Confidence 9987752 1222211 2344444445558889999999999998876655 2 2223333321112222222 23
Q ss_pred HHHHHHHHHhCcchHHHHHHHHHHhhc-CCChhHHHHHHHHHhhhhccCchhhhhhccHHHHHHHHHHHhccCCChhHHH
Q 000730 1208 RDLTRQFVQHFPSRIDSYMGSTIQAFE-APWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRA 1286 (1326)
Q Consensus 1208 ~~i~k~L~~~~~~~~~~~l~~~l~y~k-S~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~ 1286 (1326)
-+....+.+.+|..+. ...-.+.+++ ++...||..|...+..+.... ..+.++..|...+..=+|+.+|.
T Consensus 288 L~~L~~l~~~~~~~v~-~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~~--------n~~~Il~eL~~~l~~~~d~~~~~ 358 (526)
T PF01602_consen 288 LDSLSQLAQSNPPAVF-NQSLILFFLLYDDDPSIRKKALDLLYKLANES--------NVKEILDELLKYLSELSDPDFRR 358 (526)
T ss_dssp HHHHHHHCCHCHHHHG-THHHHHHHHHCSSSHHHHHHHHHHHHHH--HH--------HHHHHHHHHHHHHHHC--HHHHH
T ss_pred HHHHHHhhcccchhhh-hhhhhhheecCCCChhHHHHHHHHHhhccccc--------chhhHHHHHHHHHHhccchhhhh
Confidence 3444555556655555 4555566777 888999999987776555422 23557777777432334888999
Q ss_pred HHHHHHHHHH-HHccccccc
Q 000730 1287 TCSSSLGWLL-KSINSHSWR 1305 (1326)
Q Consensus 1287 ~Aa~aL~~l~-k~~~~~~~~ 1305 (1326)
.+..+++.+. ++.....|-
T Consensus 359 ~~i~~I~~la~~~~~~~~~~ 378 (526)
T PF01602_consen 359 ELIKAIGDLAEKFPPDAEWY 378 (526)
T ss_dssp HHHHHHHHHHHHHGSSHHHH
T ss_pred hHHHHHHHHHhccCchHHHH
Confidence 9999999887 555555554
No 19
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=98.20 E-value=0.00041 Score=86.54 Aligned_cols=299 Identities=19% Similarity=0.190 Sum_probs=192.7
Q ss_pred HhhhhccccccchHHHHHHHHHhhhcCCchhhHHHHHHHHHHhhcCCCChhHHHHHhhhccCCcchhh---h-hhHHHHH
Q 000730 991 LTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSIHI---H-QYATQVL 1066 (1326)
Q Consensus 991 L~~~L~s~~~~~Ri~a~aflsELl~~~~~~~~l~~~~i~~L~~~l~D~~~~VR~lsLrGLgnl~~~~v---~-~~~~~lL 1066 (1326)
++..|++.+..+=..++.++..++... ....+.......|..++.+|++.||.++++.++++..+.. . -....++
T Consensus 43 lf~~L~~~~~e~v~~~~~iL~~~l~~~-~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~ 121 (503)
T PF10508_consen 43 LFDCLNTSNREQVELICDILKRLLSAL-SPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELL 121 (503)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHH
Confidence 444444443333334444566666533 2234467788999999999999999999999999876521 1 1225678
Q ss_pred HHHHhhccCCChhHHHHHHHHHHHHhccCCcCCcchh-HHhHHhhhcCcCcCCChHHHHHHHHHHHHhhhcCCCcchHHH
Q 000730 1067 SVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPI-LLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAF 1145 (1326)
Q Consensus 1067 ~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~-l~~l~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~~~~ 1145 (1326)
+.++..+.|.|..|.-.|+.+|.++...- .....+ --++...+..++...++.+|.-..+++..+++. ..+.+
T Consensus 122 ~~i~~~L~~~d~~Va~~A~~~L~~l~~~~--~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~----S~~~~ 195 (503)
T PF10508_consen 122 PLIIQCLRDPDLSVAKAAIKALKKLASHP--EGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASH----SPEAA 195 (503)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHHHhCCc--hhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhc----CHHHH
Confidence 99999999999999999999999999753 222222 112256677888888999999999999999862 23444
Q ss_pred HHHHHhhhhHHHHh-ccCCChhHHHHHHHHHHhhchh------hh-h----hhhhhhccccCCC-CCCCChHHHHHHHHH
Q 000730 1146 LEQIHAMLPRLILH-IYDDDLSVRQACRNTLKQVAPF------ME-I----GVYGIFNSHCFNS-DHRSDYETFVRDLTR 1212 (1326)
Q Consensus 1146 ~eQv~~~LvpLLlH-L~D~~~~V~~ack~tL~~~a~l------L~-~----~l~~lf~~~~~~~-~~~l~~~~f~~~i~k 1212 (1326)
..-+-.++++.++. |.|+|.-|...|-..|...|.. |. . ++..++....-.+ ...+...-+++-++.
T Consensus 196 ~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~ 275 (503)
T PF10508_consen 196 EAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGN 275 (503)
T ss_pred HHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHH
Confidence 43444456666665 8888888998999988888741 11 1 1222222211001 011222333333333
Q ss_pred HHHH---hCcchHHHHHHHHHHhhcCCChhHHHHHHHHHhhhhccCchhhhh-h---ccHHHHHHHHHHHhccCCChhHH
Q 000730 1213 QFVQ---HFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHIL-S---LFYTQVFGLLVVKLSQSADAIVR 1285 (1326)
Q Consensus 1213 ~L~~---~~~~~~~~~l~~~l~y~kS~~~~IR~aA~~fiG~l~~~~~~~~~~-~---~~~e~l~~~L~~~Ll~Dpdp~VR 1285 (1326)
.... +.-+.+..|+......+.|..+.++..|.--+|.+.....-...- . -..+.+.++.-. ..+.....+|
T Consensus 276 la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~-~~~~~~~~lk 354 (503)
T PF10508_consen 276 LARVSPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGD-AIKSGSTELK 354 (503)
T ss_pred HHhcChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHH-HhcCCchHHH
Confidence 2221 112233456666667889999999999999999888655522221 1 123445555555 4667888999
Q ss_pred HHHHHHHHHHHH
Q 000730 1286 ATCSSSLGWLLK 1297 (1326)
Q Consensus 1286 ~~Aa~aL~~l~k 1297 (1326)
.++-.||+.+..
T Consensus 355 ~r~l~al~~il~ 366 (503)
T PF10508_consen 355 LRALHALASILT 366 (503)
T ss_pred HHHHHHHHHHHh
Confidence 999999999974
No 20
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=98.17 E-value=0.014 Score=71.85 Aligned_cols=299 Identities=16% Similarity=0.189 Sum_probs=197.4
Q ss_pred hhHHHHHHHHHHHHhhcCchhHHHHHHHHhhhhccccccchHHHHHHHHHhhhcCCc---hhhHHHHHHHHHHhhcCCCC
Q 000730 963 EKWINLIGDVAGCVSIKRPKEVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGG---FDSLLEQMVEALCRHVSDES 1039 (1326)
Q Consensus 963 e~~~~gV~lLAr~m~~~~~~~~~~i~~~L~~~L~s~~~~~Ri~a~aflsELl~~~~~---~~~l~~~~i~~L~~~l~D~~ 1039 (1326)
..|-+-|. .+-.++.+-+ ..+++.-++--+++..+..|..++...+..+..-+. .+.+-+.++..++..++...
T Consensus 696 r~ykqlv~-ttv~ia~KvG--~~~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqt 772 (1172)
T KOG0213|consen 696 RNYKQLVD-TTVEIAAKVG--SDPIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQT 772 (1172)
T ss_pred cchhhHHH-HHHHHHHHhC--chHHHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcc
Confidence 34444443 5556666544 345666667778889999999999888888876432 44555666777666665554
Q ss_pred hhHHHHHhhhccCCcch---hhhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCc
Q 000730 1040 PTVRGLCLRGLVQIPSI---HIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQV 1116 (1326)
Q Consensus 1040 ~~VR~lsLrGLgnl~~~---~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~l~~~lrpffe 1116 (1326)
..+- .-+.|+|.+... .+++|.+++...++..|..+...|+..|....+.|...+..-+-...+-.+-.-|--..+
T Consensus 773 t~d~-vml~gfg~V~~~lg~r~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylg 851 (1172)
T KOG0213|consen 773 TEDS-VMLLGFGTVVNALGGRVKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLG 851 (1172)
T ss_pred cchh-hhhhhHHHHHHHHhhccccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcC
Confidence 4444 456788877543 678999999999999999998889888877766665544433333444455555567888
Q ss_pred CCChHHHHHHHHHHHHhhhcCCCcchHHHHHHHHhhhhHHHHhccCCChhHHHHHHHHHHhhchhhhhhhhhhhccccCC
Q 000730 1117 SMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEIGVYGIFNSHCFN 1196 (1326)
Q Consensus 1117 de~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL~~~l~~lf~~~~~~ 1196 (1326)
.|.++|=.+-+.+.-.+.++.+.....+ -+...|+.|.--|+.....|...|-.-++.+|-. +
T Consensus 852 eeypEvLgsILgAikaI~nvigm~km~p---Pi~dllPrltPILknrheKVqen~IdLvg~Iadr--------------g 914 (1172)
T KOG0213|consen 852 EEYPEVLGSILGAIKAIVNVIGMTKMTP---PIKDLLPRLTPILKNRHEKVQENCIDLVGTIADR--------------G 914 (1172)
T ss_pred cccHHHHHHHHHHHHHHHHhccccccCC---ChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhc--------------C
Confidence 9999988876666666666544443333 2344555555566777888888887766666531 1
Q ss_pred CCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHHhhcCCChhHHHHHHHHHhhhhccCchhhhhh-----c--------
Q 000730 1197 SDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILS-----L-------- 1263 (1326)
Q Consensus 1197 ~~~~l~~~~f~~~i~k~L~~~~~~~~~~~l~~~l~y~kS~~~~IR~aA~~fiG~l~~~~~~~~~~~-----~-------- 1263 (1326)
. +..+..+++ .||=-| +..+||-...||+||+--.||+.+-..++.... +
T Consensus 915 p-E~v~aREWM-RIcfeL---------------lelLkahkK~iRRaa~nTfG~IakaIGPqdVLatLlnnLkvqeRq~R 977 (1172)
T KOG0213|consen 915 P-EYVSAREWM-RICFEL---------------LELLKAHKKEIRRAAVNTFGYIAKAIGPQDVLATLLNNLKVQERQNR 977 (1172)
T ss_pred c-ccCCHHHHH-HHHHHH---------------HHHHHHHHHHHHHHHHhhhhHHHHhcCHHHHHHHHHhcchHHHHHhc
Confidence 1 234446665 334333 447888899999999999999887555443311 0
Q ss_pred --------------cHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHcc
Q 000730 1264 --------------FYTQVFGLLVVKLSQSADAIVRATCSSSLGWLLKSIN 1300 (1326)
Q Consensus 1264 --------------~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k~~~ 1300 (1326)
+.-.+..+|.. ==+-|+..|+.-.-.||++++.+..
T Consensus 978 vcTtvaIaIVaE~c~pFtVLPalmn-eYrtPe~nVQnGVLkalsf~Feyig 1027 (1172)
T KOG0213|consen 978 VCTTVAIAIVAETCGPFTVLPALMN-EYRTPEANVQNGVLKALSFMFEYIG 1027 (1172)
T ss_pred hhhhhhhhhhhhhcCchhhhHHHHh-hccCchhHHHHhHHHHHHHHHHHHH
Confidence 01113344444 2345999999999999999987654
No 21
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=98.11 E-value=0.0021 Score=82.11 Aligned_cols=293 Identities=16% Similarity=0.097 Sum_probs=198.5
Q ss_pred hhhhccccccchHHHHHH---HHHhhhcCCchhhHHHHHHHHHHhhcCCCChhHHHHHhhhccCCcch-hhhhhHHHHHH
Q 000730 992 TKSINRQQRFQREAAAAA---LSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI-HIHQYATQVLS 1067 (1326)
Q Consensus 992 ~~~L~s~~~~~Ri~a~af---lsELl~~~~~~~~l~~~~i~~L~~~l~D~~~~VR~lsLrGLgnl~~~-~v~~~~~~lL~ 1067 (1326)
.-.++..+...|.+++.- |.++++.+.-.......++..+..-..|+++.||....-+..++..- ...+-.+.+++
T Consensus 361 ~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k~~ti~~llp 440 (759)
T KOG0211|consen 361 SNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILPKERTISELLP 440 (759)
T ss_pred HHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCCcCcCccccCh
Confidence 344555666666666543 44444432112223344456666678999999999999888777543 22333466789
Q ss_pred HHHhhccCCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCcCCChHHHHHHHHHHHHhhhcCCCcchHHHHH
Q 000730 1068 VILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLE 1147 (1326)
Q Consensus 1068 all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~l~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~~~~~e 1147 (1326)
..+..+.|.+..|++.....++.+....+..++....-++-..|-.+-+|-+..+|.+.+..+=.++.- .....|.+
T Consensus 441 ~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q---~~~~~~~~ 517 (759)
T KOG0211|consen 441 LLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQ---LGVEFFDE 517 (759)
T ss_pred hhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHh---hhhHHhhH
Confidence 999999988888999999888888888888887776666666666677777899999999888887751 11233333
Q ss_pred HHHhhhhHHHHhccCCChhHHHHHHHHHHhhchhhh--h-hhhhhhccccCCCCC-CCChHHHHHHHHHHHHHhCcc--h
Q 000730 1148 QIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFME--I-GVYGIFNSHCFNSDH-RSDYETFVRDLTRQFVQHFPS--R 1221 (1326)
Q Consensus 1148 Qv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL~--~-~l~~lf~~~~~~~~~-~l~~~~f~~~i~k~L~~~~~~--~ 1221 (1326)
. ++.+. ...+.|..-+++++|...|...+..+| | ....+..... .+++ ++-|+.-.-+-+..|..=+.. .
T Consensus 518 ~-~~~l~--~~~l~d~v~~Ir~~aa~~l~~l~~~~G~~w~~~~~i~k~L~-~~~q~~y~~R~t~l~si~~la~v~g~ei~ 593 (759)
T KOG0211|consen 518 K-LAELL--RTWLPDHVYSIREAAARNLPALVETFGSEWARLEEIPKLLA-MDLQDNYLVRMTTLFSIHELAEVLGQEIT 593 (759)
T ss_pred H-HHHHH--HhhhhhhHHHHHHHHHHHhHHHHHHhCcchhHHHhhHHHHH-HhcCcccchhhHHHHHHHHHHHHhccHHH
Confidence 3 22222 223678889999999999999999999 8 3333333221 1111 132332222333344433322 2
Q ss_pred HHHHHHHHHHhhcCCChhHHHHHHHHHhhhhccCchhhhhhccHHHHHHHHHHHhccCCChhHHHHHHHHHHHHH
Q 000730 1222 IDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLL 1296 (1326)
Q Consensus 1222 ~~~~l~~~l~y~kS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~ 1296 (1326)
...|+--.....++|-+.||-+|+.+.=-++..+....+ .+.+..+++. |.+|+|..||-+|..|++.+.
T Consensus 594 ~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~~~~----~~~v~pll~~-L~~d~~~dvr~~a~~a~~~i~ 663 (759)
T KOG0211|consen 594 CEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDESVR----DEEVLPLLET-LSSDQELDVRYRAILAFGSIE 663 (759)
T ss_pred HHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcchHHH----HHHHHHHHHH-hccCcccchhHHHHHHHHHHH
Confidence 234555556688899999999999998888887765443 4778999999 899999999999999988765
No 22
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.08 E-value=0.0066 Score=79.99 Aligned_cols=323 Identities=11% Similarity=0.100 Sum_probs=217.3
Q ss_pred HHHHHHHHHHhhcchHHH-HHHHh---cCCCCChhhHHHHHHHHHHHHhhcCchhHHHHHHHHhhhhccccccchHHHHH
Q 000730 933 ILTSFQAFCECVGDLEMR-KILAR---DGEQNDKEKWINLIGDVAGCVSIKRPKEVQTICLILTKSINRQQRFQREAAAA 1008 (1326)
Q Consensus 933 aleAlk~ll~~~g~~~~~-~~L~~---~g~W~~~e~~~~gV~lLAr~m~~~~~~~~~~i~~~L~~~L~s~~~~~Ri~a~a 1008 (1326)
+..-|-+|-+-.|.-+++ ++|+. +--|++..+---|.+.||.---+...|+++.++--|+.|--+|+..-+-+=+-
T Consensus 941 TYKELc~LASdl~qPdLVYKFM~LAnh~A~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~s 1020 (1702)
T KOG0915|consen 941 TYKELCNLASDLGQPDLVYKFMQLANHNATWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTS 1020 (1702)
T ss_pred HHHHHHHHHhhcCChHHHHHHHHHhhhhchhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHH
Confidence 444555555566666654 66665 34799877777888877764444445566666666666644444433333333
Q ss_pred HHHHhhhcCC-chhhHHHHHHHHHHhhcCCCChhHHHHHhhhccCCcch----hhhhhHHHHHHHHHhhccCCChh---H
Q 000730 1009 ALSEFVRYSG-GFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI----HIHQYATQVLSVILALLDDLDES---V 1080 (1326)
Q Consensus 1009 flsELl~~~~-~~~~l~~~~i~~L~~~l~D~~~~VR~lsLrGLgnl~~~----~v~~~~~~lL~all~~L~d~d~~---V 1080 (1326)
+---|+..+. .-......+..-|.-.+.+-.-.||..|.-+|..+..+ ++....+.+..++...+||--|. +
T Consensus 1021 IW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~a 1100 (1702)
T KOG0915|consen 1021 IWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREA 1100 (1702)
T ss_pred HHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444331 11233345777788888899999999999999988654 67777888999999999986555 4
Q ss_pred HHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCcCC-----ChHHHHHHHHHHHHhhhcCCCcchHHHHHHHHhhhhH
Q 000730 1081 QLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSM-----NVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPR 1155 (1326)
Q Consensus 1081 ~leAm~~L~~lL~~l~~~~~~~~l~~l~~~lrpffede-----~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~Lvp 1155 (1326)
.-.+..+|+++.-++..-+-+.---++.--+-||.=|+ =.+||..||...-+|+++.++..+.. ..-|+|
T Consensus 1101 a~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~-----~~~LIp 1175 (1702)
T KOG0915|consen 1101 ADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPH-----FPKLIP 1175 (1702)
T ss_pred HHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcch-----hhHHHH
Confidence 45678888888776654433333344444556777654 47999999999999999766543333 356788
Q ss_pred HHHhccCCC-hhHH-----------HHH--------------HHHHHhhchhhhh-hhhhhhccc------cCCCCCCCC
Q 000730 1156 LILHIYDDD-LSVR-----------QAC--------------RNTLKQVAPFMEI-GVYGIFNSH------CFNSDHRSD 1202 (1326)
Q Consensus 1156 LLlHL~D~~-~~V~-----------~ac--------------k~tL~~~a~lL~~-~l~~lf~~~------~~~~~~~l~ 1202 (1326)
+++..-++. |.|- +++ -.|+..|-+.... .+.++.-+- -.+-+-+..
T Consensus 1176 ~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg 1255 (1702)
T KOG0915|consen 1176 LLLNAYSELEPQVLNYLSLRLINIETEALDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRGSVGLGTKVG 1255 (1702)
T ss_pred HHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchh
Confidence 888877773 4443 111 2456666666655 444443321 022223445
Q ss_pred hHHHHHHHHHHHHHhCcchHHHHHHHHHHhhcCCChhHHHHHHHHHhhhhccCchhhh
Q 000730 1203 YETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHI 1260 (1326)
Q Consensus 1203 ~~~f~~~i~k~L~~~~~~~~~~~l~~~l~y~kS~~~~IR~aA~~fiG~l~~~~~~~~~ 1260 (1326)
...|+--+.+.+..+..-...-++..++.=+++-.+.+|++=+.-.|++.+...+++.
T Consensus 1256 ~A~fI~~L~~r~~~emtP~sgKll~al~~g~~dRNesv~kafAsAmG~L~k~Ss~dq~ 1313 (1702)
T KOG0915|consen 1256 CASFISLLVQRLGSEMTPYSGKLLRALFPGAKDRNESVRKAFASAMGYLAKFSSPDQM 1313 (1702)
T ss_pred HHHHHHHHHHHhccccCcchhHHHHHHhhccccccHHHHHHHHHHHHHHHhcCChHHH
Confidence 6788888888888888888999999999999999999999999999999998876554
No 23
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.99 E-value=0.028 Score=70.02 Aligned_cols=527 Identities=16% Similarity=0.174 Sum_probs=261.2
Q ss_pred HHHhccCCChhhHHHHHHHHHHHHhhhcccccccchhhHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccCchhHHHHHH
Q 000730 724 CTTAICDRTKQSAEGAIQAVVEFVTKRGNELSETDVSRTTQSLLSAAVHITDKHLRLETLGAISCLAENTNSKIVFNEVL 803 (1326)
Q Consensus 724 ll~~L~d~~~~~~~~A~~~L~~~l~~rg~~L~e~~V~~I~~~I~~~l~~i~~~~~r~~~l~ai~~La~~h~~~vV~~~Ll 803 (1326)
++..|+.+.+.....|++.+-.+= +.||...+-|+.+..+......-....+|++.+.+|--+.++-.++|+ ...
T Consensus 95 il~tL~~~ep~~~s~Aaq~va~IA---~~ElP~n~wp~li~~lv~nv~~~~~~~~k~~slealGyice~i~pevl-~~~- 169 (859)
T KOG1241|consen 95 ILRTLGSPEPRRPSSAAQCVAAIA---CIELPQNQWPELIVTLVSNVGEEQASMVKESSLEALGYICEDIDPEVL-EQQ- 169 (859)
T ss_pred HHHHcCCCCCCccchHHHHHHHHH---HhhCchhhCHHHHHHHHHhcccccchHHHHHHHHHHHHHHccCCHHHH-HHH-
Confidence 456678888888888888776653 456665668888888877666666667899999999888877666644 221
Q ss_pred hhhcccchhhhhccccCCCCchhHHHHhhcCcccHH--HHHHHHHHHHc---cCCCccCCCccCCCCCC----CCCCCcc
Q 000730 804 ATAGKDIVTKDISRLRGGWPMQDAFHAFSQHAVLSF--LFLEHLISALN---QTPFVKGDMEKGDYSSH----SADTWID 874 (1326)
Q Consensus 804 ~~~~~~~~~~~~~~L~~~lP~d~~W~aLa~d~~l~~--~vL~~LL~~L~---~~p~~~e~~~~~~~~~~----~~~~~~~ 874 (1326)
..+++|.= ..++.+- +++... --+.-|+.-|. ...-++. .+++-.. .|.....
T Consensus 170 ---sN~iLtaI---v~gmrk~---------e~s~~vRLaa~~aL~nsLef~~~nF~~E~---ern~iMqvvcEatq~~d~ 231 (859)
T KOG1241|consen 170 ---SNDILTAI---VQGMRKE---------ETSAAVRLAALNALYNSLEFTKANFNNEM---ERNYIMQVVCEATQSPDE 231 (859)
T ss_pred ---HhHHHHHH---Hhhcccc---------CCchhHHHHHHHHHHHHHHHHHHhhccHh---hhceeeeeeeecccCCcH
Confidence 01111110 0122221 111111 11223333222 1111111 1111111 1111111
Q ss_pred chHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHHHHHhhhcccC---------CC-----------------CCCCC
Q 000730 875 DDILQAAILALTAFFRGGGKVGKKAVEKSYAPVLAALTLQLGSCHGL---------AS-----------------SGQHE 928 (1326)
Q Consensus 875 ~~~~laA~~aL~Ell~~~~~~~~~av~~~fp~Lf~aLL~ql~~~~~~---------~~-----------------~~~~~ 928 (1326)
-+-.||..-|.-+... |-+-++.+.-+=+.++.+.--++-+- +. .+...
T Consensus 232 -~i~~aa~~ClvkIm~L----yY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~ 306 (859)
T KOG1241|consen 232 -EIQVAAFQCLVKIMSL----YYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLP 306 (859)
T ss_pred -HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 1223444444443331 22222222222111221111111100 00 01222
Q ss_pred h--HHHHHHHHHHHHHhhcchHHHHHHHhcC------CCCChhhHHHHHH--HHHHHHhhcCchhHHHHHHHHhhhhccc
Q 000730 929 P--LRAILTSFQAFCECVGDLEMRKILARDG------EQNDKEKWINLIG--DVAGCVSIKRPKEVQTICLILTKSINRQ 998 (1326)
Q Consensus 929 P--~~~aleAlk~ll~~~g~~~~~~~L~~~g------~W~~~e~~~~gV~--lLAr~m~~~~~~~~~~i~~~L~~~L~s~ 998 (1326)
| ..++..|++.++ -...+.|.+++ .|.-.. --|+. +.|++. ....++.++.++-..++++
T Consensus 307 p~~~~fa~~a~~~v~-----P~Ll~~L~kqde~~d~DdWnp~k--AAg~CL~l~A~~~---~D~Iv~~Vl~Fiee~i~~p 376 (859)
T KOG1241|consen 307 PSSKYFARQALQDVV-----PVLLELLTKQDEDDDDDDWNPAK--AAGVCLMLFAQCV---GDDIVPHVLPFIEENIQNP 376 (859)
T ss_pred chhhHHHHHHHhHhh-----HHHHHHHHhCCCCcccccCcHHH--HHHHHHHHHHHHh---cccchhhhHHHHHHhcCCc
Confidence 4 235666665433 12334455532 365111 12332 344432 2336788888888899999
Q ss_pred cccchHHHHHHHHHhhhcCCc--hhhHHHHHHHHHHhhcCCCChhHHHHHhhhccCCcch-----hhhhhHHHHHHHHHh
Q 000730 999 QRFQREAAAAALSEFVRYSGG--FDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI-----HIHQYATQVLSVILA 1071 (1326)
Q Consensus 999 ~~~~Ri~a~aflsELl~~~~~--~~~l~~~~i~~L~~~l~D~~~~VR~lsLrGLgnl~~~-----~v~~~~~~lL~all~ 1071 (1326)
+=++|-+|+-.|.-.+..|.. ........+..+.+-..||+-.||.-+.--+|.++.+ --..|-+.++++++.
T Consensus 377 dwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~ 456 (859)
T KOG1241|consen 377 DWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLE 456 (859)
T ss_pred chhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHH
Confidence 999998888777777776543 2333456777888888899999999999999988754 124466889999999
Q ss_pred hccCCChhHHHHHHHHHHHHhccCCcCCc--------chhHHhHHhhhcCcC---cCCChHHHHHHHHHHHHhhhcCCCc
Q 000730 1072 LLDDLDESVQLTAVSCLLTILKSSSKDAV--------EPILLNLSVRLRNLQ---VSMNVKMRRNAFAAFGALSNFGVGS 1140 (1326)
Q Consensus 1072 ~L~d~d~~V~leAm~~L~~lL~~l~~~~~--------~~~l~~l~~~lrpff---ede~~~vR~aAi~LfG~L~~~~~~~ 1140 (1326)
||.| ...|...+=.++-.+.+...+... .+++..|...|-.-= +-....+|.+|++.+|++++++...
T Consensus 457 gL~D-ePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~ 535 (859)
T KOG1241|consen 457 GLND-EPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDD 535 (859)
T ss_pred Hhhh-CchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHH
Confidence 9987 444554444444444322222222 234444444442211 2245789999999999999977654
Q ss_pred chHHHHHH-------HHhhhhHHHHhccCCCh-hHHHH--H---HHHHHhhchhh-hh--hhhhhhccccCCCCC-CCCh
Q 000730 1141 QREAFLEQ-------IHAMLPRLILHIYDDDL-SVRQA--C---RNTLKQVAPFM-EI--GVYGIFNSHCFNSDH-RSDY 1203 (1326)
Q Consensus 1141 ~~~~~~eQ-------v~~~LvpLLlHL~D~~~-~V~~a--c---k~tL~~~a~lL-~~--~l~~lf~~~~~~~~~-~l~~ 1203 (1326)
..+...+- +.+++-.=.+-+.|... .+.+. | ...+++.++-. .. .+-.+|-+- ++..+ ..-.
T Consensus 536 vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~d~iM~lflri-~~s~~s~~v~ 614 (859)
T KOG1241|consen 536 VYPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGSDIREVSDQIMGLFLRI-FESKRSAVVH 614 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHH-HcCCccccch
Confidence 44332222 22222222222222211 11110 0 01111111100 00 011111110 11101 1111
Q ss_pred HHHHHHHHHHHHHhCcchHHHHHHHHHHhhc----C-CChhHHHHHHHHHhhhhccCchhhhhhccHHHHHHHHHHHhcc
Q 000730 1204 ETFVRDLTRQFVQHFPSRIDSYMGSTIQAFE----A-PWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQ 1278 (1326)
Q Consensus 1204 ~~f~~~i~k~L~~~~~~~~~~~l~~~l~y~k----S-~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~ 1278 (1326)
++.+..+ ..|+.+....+..|+..-.+|+- + ....+-.+|+=++|=+...+.++.+ ...+.+.+.|.. .++
T Consensus 615 e~a~laV-~tl~~~Lg~~F~kym~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~i~--py~d~~mt~Lvq-~Ls 690 (859)
T KOG1241|consen 615 EEAFLAV-STLAESLGKGFAKYMPAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALEDDIL--PYCDELMTVLVQ-CLS 690 (859)
T ss_pred HHHHHHH-HHHHHHHhHhHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhhh--hHHHHHHHHHHH-Hcc
Confidence 2222222 23444555555555555555542 2 2245888999999988888876665 344666666666 555
Q ss_pred CCC-------hhHHHHHHHHHHH
Q 000730 1279 SAD-------AIVRATCSSSLGW 1294 (1326)
Q Consensus 1279 Dpd-------p~VR~~Aa~aL~~ 1294 (1326)
.|. +...++.-.||..
T Consensus 691 s~~~hR~vKP~IlS~FgDIAlaI 713 (859)
T KOG1241|consen 691 SPNLHRNVKPAILSVFGDIALAI 713 (859)
T ss_pred CccccccccchHHHHHHHHHHHH
Confidence 443 3445566665543
No 24
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.98 E-value=0.00018 Score=87.12 Aligned_cols=293 Identities=17% Similarity=0.152 Sum_probs=183.8
Q ss_pred HHHHhhhhccccccchHHHHHHHHHhhhcC---CchhhHHHHHHHHHHhhc-CCCChhHHHHHhhhccCCcchhh---hh
Q 000730 988 CLILTKSINRQQRFQREAAAAALSEFVRYS---GGFDSLLEQMVEALCRHV-SDESPTVRGLCLRGLVQIPSIHI---HQ 1060 (1326)
Q Consensus 988 ~~~L~~~L~s~~~~~Ri~a~aflsELl~~~---~~~~~l~~~~i~~L~~~l-~D~~~~VR~lsLrGLgnl~~~~v---~~ 1060 (1326)
+..++-.+.|....++++++..|-.++... ........-++..|-+.+ ++.+|.+|.-|.-.|-||+.+.- +.
T Consensus 68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~ 147 (514)
T KOG0166|consen 68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKV 147 (514)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccc
Confidence 444555566777777999999999888753 222222223666777777 58889999999999999998611 11
Q ss_pred h-HHHHHHHHHhhccCCChhHHHHHHHHHHHHhccCCcCCcchhHHh--HHhhhcCc-CcCCChHHHHHHHHHHHHhhhc
Q 000730 1061 Y-ATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLN--LSVRLRNL-QVSMNVKMRRNAFAAFGALSNF 1136 (1326)
Q Consensus 1061 ~-~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~--l~~~lrpf-fede~~~vR~aAi~LfG~L~~~ 1136 (1326)
+ -...++.++..+...++.|.-.|+.+|++|...-. ..+.+.++ +..-|-.+ ..+....+...+.-++..|++
T Consensus 148 vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~--~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcr- 224 (514)
T KOG0166|consen 148 VVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSP--DCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCR- 224 (514)
T ss_pred cccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCCh--HHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHc-
Confidence 1 13457789999999999999999999999987532 12222111 11111223 333334677777777777776
Q ss_pred CCCcchHHHHHHHHhhhhHHHHhccCCChhHHHHHHHHHHhhchh----------hhh--hhhhhhccccCCCC----CC
Q 000730 1137 GVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPF----------MEI--GVYGIFNSHCFNSD----HR 1200 (1326)
Q Consensus 1137 ~~~~~~~~~~eQv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~l----------L~~--~l~~lf~~~~~~~~----~~ 1200 (1326)
|+...+=.++|...|+-|..+++..|++|..-+-.|+.-++-- .|. .+.+++......-. +-
T Consensus 225 --gk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRa 302 (514)
T KOG0166|consen 225 --GKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRA 302 (514)
T ss_pred --CCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhh
Confidence 5545555688999999999999999999998777777765521 111 22222222100000 00
Q ss_pred CCh----HHHHHHHHHHHHHhCcchHHHHHHHHHHhhc-CCChhHHHHHHHHHhhhhccCchhhhhhccHHHHHHHHHHH
Q 000730 1201 SDY----ETFVRDLTRQFVQHFPSRIDSYMGSTIQAFE-APWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVK 1275 (1326)
Q Consensus 1201 l~~----~~f~~~i~k~L~~~~~~~~~~~l~~~l~y~k-S~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~ 1275 (1326)
+.+ .+.. ...+-. .-.+......+. ||-..||..|+|+++-+.-.- .++...+=...++..|..
T Consensus 303 iGNIvtG~d~Q----Tq~vi~-----~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~-~~qiqaVida~l~p~Li~- 371 (514)
T KOG0166|consen 303 IGNIVTGSDEQ----TQVVIN-----SGALPVLSNLLSSSPKESIKKEACWTISNITAGN-QEQIQAVIDANLIPVLIN- 371 (514)
T ss_pred ccceeeccHHH----HHHHHh-----cChHHHHHHHhccCcchhHHHHHHHHHHHhhcCC-HHHHHHHHHcccHHHHHH-
Confidence 000 0000 001111 112233334444 778889999999999887633 345444423457888999
Q ss_pred hccCCChhHHHHHHHHHHHHH
Q 000730 1276 LSQSADAIVRATCSSSLGWLL 1296 (1326)
Q Consensus 1276 Ll~Dpdp~VR~~Aa~aL~~l~ 1296 (1326)
+++.-|-..|+.|+.|++.+-
T Consensus 372 ~l~~~ef~~rKEAawaIsN~t 392 (514)
T KOG0166|consen 372 LLQTAEFDIRKEAAWAISNLT 392 (514)
T ss_pred HHhccchHHHHHHHHHHHhhc
Confidence 788888999999999988754
No 25
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=97.93 E-value=0.0088 Score=73.32 Aligned_cols=517 Identities=13% Similarity=0.099 Sum_probs=292.0
Q ss_pred HhhccccCCChhHHHHHHHHHHHHHHHHhhCCCCCCCCCCcchhhhhhhhhhcHHHHHHhccCCCCChhHHHH---HHHH
Q 000730 630 MYLPRCADTDSEVRKISAQILDQLFSISLSLPRPVGSSSGIDLELSYGALSSLEDVIAILRSDASIDPSEVFN---RIVS 706 (1326)
Q Consensus 630 ~l~prC~D~~~~iR~~A~~~i~~Ll~I~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~~---~i~~ 706 (1326)
.++|.=.|+...+|..-.++-...++-..- +. ...+..+.+. .+.+.. . ..+.+ -.-.
T Consensus 21 ~~~~~g~d~~~~v~~~ml~a~~~~~~~~~~-------------~~-v~~l~~~~~~--~l~~~~-~--~~~~~~~~v~~~ 81 (569)
T KOG1242|consen 21 FLVSAGEDRRIDVRGNMLEAGEAAINQHGD-------------QN-VLNLKPCFEQ--RLNSLH-N--DNLRNNVVVLEG 81 (569)
T ss_pred eecccCCCcchhhHHhHHHHHHHHHHhhhH-------------HH-HHHHHHHHHH--Hhccch-h--HHHhhhhHHHHH
Confidence 344555999999999988887665443211 01 1122222211 122210 0 11111 1122
Q ss_pred HHHccCChhH--HHHHHHHHHHhccCCChhhHHHHHHHHHHHHhhhcccccccchhhHHHHHHHHHhhcCcHHHHHHHHH
Q 000730 707 SVCILLTKDE--LVATLHSCTTAICDRTKQSAEGAIQAVVEFVTKRGNELSETDVSRTTQSLLSAAVHITDKHLRLETLG 784 (1326)
Q Consensus 707 ~i~~~L~~~e--l~~ll~~ll~~L~d~~~~~~~~A~~~L~~~l~~rg~~L~e~~V~~I~~~I~~~l~~i~~~~~r~~~l~ 784 (1326)
+.++++...+ ...++..+++.+.-|.++...+.+.-|....-.-. .++.......+...+. .+.-..|.++-.
T Consensus 82 ~~a~~~~~~d~~~~~~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~----~~~~~~~l~~l~~ll~-~~~~~~~~~aa~ 156 (569)
T KOG1242|consen 82 TLAFHLQIVDPRPISIIEILLEELDTPSKSVQRAVSTCLPPLVVLSK----GLSGEYVLELLLELLT-STKIAERAGAAY 156 (569)
T ss_pred HHHHhccccCcchhHHHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhh----ccCHHHHHHHHHHHhc-cccHHHHhhhhH
Confidence 3444554333 23577888899998888777776665555542211 1223333444444344 555555565555
Q ss_pred HHHHHhhccCchhHHHHHHhhhcccchhhhhccccCCCCchhHHHHhhcCcccHHHHHHHHHHHHccCCCccCCCccCCC
Q 000730 785 AISCLAENTNSKIVFNEVLATAGKDIVTKDISRLRGGWPMQDAFHAFSQHAVLSFLFLEHLISALNQTPFVKGDMEKGDY 864 (1326)
Q Consensus 785 ai~~La~~h~~~vV~~~Ll~~~~~~~~~~~~~~L~~~lP~d~~W~aLa~d~~l~~~vL~~LL~~L~~~p~~~e~~~~~~~ 864 (1326)
++..+......+ .+ --..++..|-...+.+..+.-
T Consensus 157 ~~ag~v~g~~i~----~~----------------------------------~~~~~l~~l~~ai~dk~~~~~------- 191 (569)
T KOG1242|consen 157 GLAGLVNGLGIE----SL----------------------------------KEFGFLDNLSKAIIDKKSALN------- 191 (569)
T ss_pred HHHHHHcCcHHh----hh----------------------------------hhhhHHHHHHHHhcccchhhc-------
Confidence 555555443321 11 011334444443333322211
Q ss_pred CCCCCCCCccchHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHHHHHhhhcccCCCCCCCChHH-HHHHHHHHHHHh
Q 000730 865 SSHSADTWIDDDILQAAILALTAFFRGGGKVGKKAVEKSYAPVLAALTLQLGSCHGLASSGQHEPLR-AILTSFQAFCEC 943 (1326)
Q Consensus 865 ~~~~~~~~~~~~~~laA~~aL~Ell~~~~~~~~~av~~~fp~Lf~aLL~ql~~~~~~~~~~~~~P~~-~aleAlk~ll~~ 943 (1326)
+. ..+-|..+.+..+- +.+.+-+...+|.+|... |- ..+-.| .+.+|.|+++.+
T Consensus 192 -------re---~~~~a~~~~~~~Lg---~~~EPyiv~~lp~il~~~----~d--------~~~~Vr~Aa~~a~kai~~~ 246 (569)
T KOG1242|consen 192 -------RE---AALLAFEAAQGNLG---PPFEPYIVPILPSILTNF----GD--------KINKVREAAVEAAKAIMRC 246 (569)
T ss_pred -------HH---HHHHHHHHHHHhcC---CCCCchHHhhHHHHHHHh----hc--------cchhhhHHHHHHHHHHHHh
Confidence 11 11222223333222 245566778888877754 11 111122 688899999999
Q ss_pred hcchHHHHHHHh------cCCCCChhhHHHHHHHHHHHHhhcCchh----HHHHHHHHhhhhccccccchHHHHHHHHHh
Q 000730 944 VGDLEMRKILAR------DGEQNDKEKWINLIGDVAGCVSIKRPKE----VQTICLILTKSINRQQRFQREAAAAALSEF 1013 (1326)
Q Consensus 944 ~g~~~~~~~L~~------~g~W~~~e~~~~gV~lLAr~m~~~~~~~----~~~i~~~L~~~L~s~~~~~Ri~a~aflsEL 1013 (1326)
.-...+-..+-- ...|.++..-.++++ +|+...+.+ ++.++--+...|.......|-++...+..+
T Consensus 247 ~~~~aVK~llpsll~~l~~~kWrtK~aslellg----~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~ 322 (569)
T KOG1242|consen 247 LSAYAVKLLLPSLLGSLLEAKWRTKMASLELLG----AMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKF 322 (569)
T ss_pred cCcchhhHhhhhhHHHHHHHhhhhHHHHHHHHH----HHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 877666433221 126887766555554 566666554 555555556666666667777777666554
Q ss_pred hhcCCchhhHHHHHHHHHHhhcCCCChhHHHHHhhhccCCcch-hh-hhhHHHHHHHHHhhccCCChhHHHHHHHHHHHH
Q 000730 1014 VRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI-HI-HQYATQVLSVILALLDDLDESVQLTAVSCLLTI 1091 (1326)
Q Consensus 1014 l~~~~~~~~l~~~~i~~L~~~l~D~~~~VR~lsLrGLgnl~~~-~v-~~~~~~lL~all~~L~d~d~~V~leAm~~L~~l 1091 (1326)
-. ......+...+..|.+.+.||+..+. -|+++||.-... .| ..-..-+.+-+-.||.+.+..+--.+.....+.
T Consensus 323 ~s--vidN~dI~~~ip~Lld~l~dp~~~~~-e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm 399 (569)
T KOG1242|consen 323 GS--VIDNPDIQKIIPTLLDALADPSCYTP-ECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNM 399 (569)
T ss_pred HH--hhccHHHHHHHHHHHHHhcCcccchH-HHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHH
Confidence 32 22233367789999999999997776 477899866532 11 122345577788889888777777777777777
Q ss_pred hccC-CcCCcchhHHhHHhhhcCcCcCCChHHHHHHHHHHHHhhhcCCCcchHHHHHHHHhhhhHHHHhcc-CCChhHH-
Q 000730 1092 LKSS-SKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIY-DDDLSVR- 1168 (1326)
Q Consensus 1092 L~~l-~~~~~~~~l~~l~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~LvpLLlHL~-D~~~~V~- 1168 (1326)
-... +.+.+.+++..|...++.-+.|--+++|+.|-+.+|.+.+-.+. +-+..++|.+.|.- ++...|-
T Consensus 400 ~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~--------~~f~d~~p~l~e~~~~~k~~~~~ 471 (569)
T KOG1242|consen 400 CKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLERLGE--------VSFDDLIPELSETLTSEKSLVDR 471 (569)
T ss_pred HHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHh--------hcccccccHHHHhhccchhhhhh
Confidence 7777 67889999999999999999999999999999999999973221 11246777777755 2222221
Q ss_pred HHHHHHHHhhchhhhhhhhhhhccccCCCCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHHhhcCCChhHHHHHHHHH
Q 000730 1169 QACRNTLKQVAPFMEIGVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFS 1248 (1326)
Q Consensus 1169 ~ack~tL~~~a~lL~~~l~~lf~~~~~~~~~~l~~~~f~~~i~k~L~~~~~~~~~~~l~~~l~y~kS~~~~IR~aA~~fi 1248 (1326)
..+...+. ++... .+.+ .+++.+.++.+ .+ -..-.|+++|-.=++|+
T Consensus 472 ~g~aq~l~-----------evl~~--~~v~---~~~~~~~~~~a---------------~~--~~~~~~~~~~dg~~~~~ 518 (569)
T KOG1242|consen 472 SGAAQDLS-----------EVLAG--LGVE---KVEDILPEILA---------------NA--SSVLIDERIRDGVIWLF 518 (569)
T ss_pred HHHhhhHH-----------HHHhc--ccch---HHHHHHHHHHH---------------HH--hhccchhhhccCeeehh
Confidence 11112222 22221 1110 11222222211 11 12445777888888888
Q ss_pred hhhhccCchhhhhhccHHHHHHHHHHHhccCCChhHHHHHHHH
Q 000730 1249 SSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSS 1291 (1326)
Q Consensus 1249 G~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~a 1291 (1326)
+++--..+.+....+ -+++..+.. =+-|.|+.+|..+-++
T Consensus 519 ~~lp~~~~~~~~~yi--~~i~~~~~k-~~ad~de~~~~~~~~~ 558 (569)
T KOG1242|consen 519 YLLPYIFGFQFQPYI--HEILDEFLK-GLADNDEKGRDTALEA 558 (569)
T ss_pred hccchhhhHHhHHHH--HHHHHHHHH-HhhhcCCccccchhhh
Confidence 877655555554333 455565555 3558999999887766
No 26
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=97.83 E-value=0.13 Score=62.50 Aligned_cols=292 Identities=16% Similarity=0.175 Sum_probs=189.0
Q ss_pred chhHHHHHHHHhhhhccccccchHHHH---HHHHHhhhcCCchhhHHHHHHHHHHhhcCCCChhHHHHHhhhccCCcch-
Q 000730 981 PKEVQTICLILTKSINRQQRFQREAAA---AALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI- 1056 (1326)
Q Consensus 981 ~~~~~~i~~~L~~~L~s~~~~~Ri~a~---aflsELl~~~~~~~~l~~~~i~~L~~~l~D~~~~VR~lsLrGLgnl~~~- 1056 (1326)
-|+++.|++..+..|+++....|+-|+ +.++-.|+.|... ..+..+-++|.+.+....|.|-.-.|.++-.|-+.
T Consensus 599 kp~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~-~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~ 677 (975)
T COG5181 599 KPHLSMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGET-KELAKLGNILYENLGEDYPEVLGSILKAICSIYSVH 677 (975)
T ss_pred CcchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchH-HHHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhh
Confidence 469999999999999999998888887 4455556666553 44566788999999999999999999988877532
Q ss_pred ---hhhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCcCCChHHHHHHHHHHHHh
Q 000730 1057 ---HIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGAL 1133 (1326)
Q Consensus 1057 ---~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~l~~~lrpffede~~~vR~aAi~LfG~L 1133 (1326)
++..-...+||.+..-|..+...|+...+.-++.|-...++..-..--..||+-|-..+-.-+-++|.+|..-||-+
T Consensus 678 ~~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~I 757 (975)
T COG5181 678 RFRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCI 757 (975)
T ss_pred cccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhH
Confidence 45556678899999999988999999999999999888766544455668888888888889999999999999999
Q ss_pred hhcCCCcchHHHHHHHHhhhhHHHHhccCCChhHHHHHHHHHHhhchhhhh--hhhhhhccccCCCCCCCChHHHHHHHH
Q 000730 1134 SNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEI--GVYGIFNSHCFNSDHRSDYETFVRDLT 1211 (1326)
Q Consensus 1134 ~~~~~~~~~~~~~eQv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL~~--~l~~lf~~~~~~~~~~l~~~~f~~~i~ 1211 (1326)
++.. |++ ..|+.|+=.|+-++-.-+.-..-|...+|..-+. .+..+.... -..+-....+ .++.+|
T Consensus 758 s~ai-GPq---------dvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgpfsVlP~lm~dY-~TPe~nVQnG-vLkam~ 825 (975)
T COG5181 758 SRAI-GPQ---------DVLDILLNNLKVQERQQRVCTSVAISIVAEYCGPFSVLPTLMSDY-ETPEANVQNG-VLKAMC 825 (975)
T ss_pred Hhhc-CHH---------HHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCchhhHHHHHhcc-cCchhHHHHh-HHHHHH
Confidence 9843 332 3566666666555544443333444444433332 223333221 0010000011 223322
Q ss_pred HHHHHhCcchHHHHHHHHHH----hhcCCChhHHHHHHHHHhhhhccCchhhhhhccHHHHHHHHHHHhc----cCCChh
Q 000730 1212 RQFVQHFPSRIDSYMGSTIQ----AFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLS----QSADAI 1283 (1326)
Q Consensus 1212 k~L~~~~~~~~~~~l~~~l~----y~kS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll----~Dpdp~ 1283 (1326)
- +.+.-.+....|+-...+ .+-+-.+.-|+.|+-.|-.+.-+-+ ..+.|+..=.|.. |+ -||.|.
T Consensus 826 f-mFeyig~~s~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~-----gtg~eda~IHLlN-llwpNIle~sPh 898 (975)
T COG5181 826 F-MFEYIGQASLDYVYSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCP-----GTGDEDAAIHLLN-LLWPNILEPSPH 898 (975)
T ss_pred H-HHHHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHHHHHHhcCCC-----CcccHHHHHHHHH-HhhhhccCCCcH
Confidence 2 122222222333333332 4556677789999999987765533 1223444444444 33 378888
Q ss_pred HHHHHHHHH
Q 000730 1284 VRATCSSSL 1292 (1326)
Q Consensus 1284 VR~~Aa~aL 1292 (1326)
|...--+.+
T Consensus 899 vi~~~~Eg~ 907 (975)
T COG5181 899 VIQSFDEGM 907 (975)
T ss_pred HHHHHHHHH
Confidence 887655543
No 27
>PTZ00429 beta-adaptin; Provisional
Probab=97.78 E-value=0.0073 Score=77.95 Aligned_cols=271 Identities=11% Similarity=0.090 Sum_probs=137.3
Q ss_pred HHHHHHHHhhhhccccccchHHHHHHHHHhhhcCCchhhHHHHHHHHHHhhcCCCChhHHHHHhhhccCCcch---hhhh
Q 000730 984 VQTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI---HIHQ 1060 (1326)
Q Consensus 984 ~~~i~~~L~~~L~s~~~~~Ri~a~aflsELl~~~~~~~~l~~~~i~~L~~~l~D~~~~VR~lsLrGLgnl~~~---~v~~ 1060 (1326)
+..++..+.+.+.+.+.-.|.+|+..+..+.+.... .......++.|.+-+.|+||.|..-|+..|-.+... .. .
T Consensus 138 ~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pe-lv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l-~ 215 (746)
T PTZ00429 138 LEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQ-LFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKI-E 215 (746)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcc-cccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhh-H
Confidence 334444444445444544555555444444332111 001122445555555555555555555555544321 01 0
Q ss_pred hHHHHHHHHHhhccCCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCcCCChHHHHHHHHHHHHhhhcCCCc
Q 000730 1061 YATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGS 1140 (1326)
Q Consensus 1061 ~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~l~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~ 1140 (1326)
.....+..++..+.+.++--....+..|.+-- ..+ ..-...+..++.|.+.+.|+.|-.+|+.+|=.+....
T Consensus 216 l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~----P~~-~~e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~--- 287 (746)
T PTZ00429 216 SSNEWVNRLVYHLPECNEWGQLYILELLAAQR----PSD-KESAETLLTRVLPRMSHQNPAVVMGAIKVVANLASRC--- 287 (746)
T ss_pred HHHHHHHHHHHHhhcCChHHHHHHHHHHHhcC----CCC-cHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcC---
Confidence 11222333344444334333333333332211 111 2223466677788888999999999999999887643
Q ss_pred chHHHHHHHHhhhhHHHHhccCCChhHHHHHHHHHHhhc----hhhhhhhhhhhccccCCCCCCCCh-HHHHHHHHHHHH
Q 000730 1141 QREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVA----PFMEIGVYGIFNSHCFNSDHRSDY-ETFVRDLTRQFV 1215 (1326)
Q Consensus 1141 ~~~~~~eQv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a----~lL~~~l~~lf~~~~~~~~~~l~~-~~f~~~i~k~L~ 1215 (1326)
...+.+++..-+.+.++-|...+++|+-.+=..+..+. .++.-.++..|++. .| -.| ..---++.- .
T Consensus 288 -~~~~~~~~~~rl~~pLv~L~ss~~eiqyvaLr~I~~i~~~~P~lf~~~~~~Ff~~~--~D---p~yIK~~KLeIL~--~ 359 (746)
T PTZ00429 288 -SQELIERCTVRVNTALLTLSRRDAETQYIVCKNIHALLVIFPNLLRTNLDSFYVRY--SD---PPFVKLEKLRLLL--K 359 (746)
T ss_pred -CHHHHHHHHHHHHHHHHHhhCCCccHHHHHHHHHHHHHHHCHHHHHHHHHhhhccc--CC---cHHHHHHHHHHHH--H
Confidence 23466676655544333444455666544433333222 12222333334432 22 112 111111211 2
Q ss_pred HhCcchHHHHHHHHHHhhcCCChhHHHHHHHHHhhhhccCchhhhhhccHHHHHHHHHHHhccC
Q 000730 1216 QHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQS 1279 (1326)
Q Consensus 1216 ~~~~~~~~~~l~~~l~y~kS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~D 1279 (1326)
--.++.+...+.....|..+....+++.|+.-||.+....+.. .++.++.|.. ++++
T Consensus 360 Lane~Nv~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~~~------a~~cV~~Ll~-ll~~ 416 (746)
T PTZ00429 360 LVTPSVAPEILKELAEYASGVDMVFVVEVVRAIASLAIKVDSV------APDCANLLLQ-IVDR 416 (746)
T ss_pred HcCcccHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhChHH------HHHHHHHHHH-HhcC
Confidence 2357778888899899999999999999999999887665532 2444555555 3443
No 28
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.78 E-value=0.0011 Score=79.97 Aligned_cols=123 Identities=20% Similarity=0.156 Sum_probs=94.0
Q ss_pred HHHHHHHHhhc-CCCChhHHHHHhhhccCCcchhhhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhccCCcCCcchh
Q 000730 1025 EQMVEALCRHV-SDESPTVRGLCLRGLVQIPSIHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPI 1103 (1326)
Q Consensus 1025 ~~~i~~L~~~l-~D~~~~VR~lsLrGLgnl~~~~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~ 1103 (1326)
+..+..|...+ .|+++.|+..+..++..... +..+.+++..|+|.++.|..++..+|+.+-. ....
T Consensus 53 ~~a~~~L~~aL~~d~~~ev~~~aa~al~~~~~-------~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~----~~a~-- 119 (410)
T TIGR02270 53 KAATELLVSALAEADEPGRVACAALALLAQED-------ALDLRSVLAVLQAGPEGLCAGIQAALGWLGG----RQAE-- 119 (410)
T ss_pred HhHHHHHHHHHhhCCChhHHHHHHHHHhccCC-------hHHHHHHHHHhcCCCHHHHHHHHHHHhcCCc----hHHH--
Confidence 34567788888 68899999999999875543 3348899999999999999999999997543 2222
Q ss_pred HHhHHhhhcCcCcCCChHHHHHHHHHHHHhhhcCCCcchHHHHHHHHhhhhHHHHhccCCChhHHHHHHHHHHhhch
Q 000730 1104 LLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAP 1180 (1326)
Q Consensus 1104 l~~l~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~ 1180 (1326)
..|.+.++++++.||.+++.+.|.-.. . ...+|+-.|+|+++.|+.++-.+|+.+..
T Consensus 120 -----~~L~~~L~~~~p~vR~aal~al~~r~~-----~----------~~~~L~~~L~d~d~~Vra~A~raLG~l~~ 176 (410)
T TIGR02270 120 -----PWLEPLLAASEPPGRAIGLAALGAHRH-----D----------PGPALEAALTHEDALVRAAALRALGELPR 176 (410)
T ss_pred -----HHHHHHhcCCChHHHHHHHHHHHhhcc-----C----------hHHHHHHHhcCCCHHHHHHHHHHHHhhcc
Confidence 334567899999999999988887211 1 23456666789999999999999988653
No 29
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.77 E-value=0.0003 Score=78.41 Aligned_cols=182 Identities=19% Similarity=0.193 Sum_probs=116.5
Q ss_pred CChhHHHHHHHHHHHHhccC-CcCCcchh---HHhHHhhhcCcCcCCChHHHHHHHHHHHHhhhcCCCcchHHHHHHHHh
Q 000730 1076 LDESVQLTAVSCLLTILKSS-SKDAVEPI---LLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHA 1151 (1326)
Q Consensus 1076 ~d~~V~leAm~~L~~lL~~l-~~~~~~~~---l~~l~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~ 1151 (1326)
.|=..+.+|+..|..++..- .......+ +-.+...+-..+.|.|..|-..|..+++.++...+ ..|...+-.
T Consensus 19 ~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~----~~~~~~~~~ 94 (228)
T PF12348_consen 19 SDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLG----SHFEPYADI 94 (228)
T ss_dssp SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHG----GGGHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh----HhHHHHHHH
Confidence 34468899999999998765 12222222 22233455678889999999999999999997432 336667777
Q ss_pred hhhHHHHhccCCChhHHHHHHHHHHhhchhhhhhhhhhhccccCCCCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHH
Q 000730 1152 MLPRLILHIYDDDLSVRQACRNTLKQVAPFMEIGVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQ 1231 (1326)
Q Consensus 1152 ~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL~~~l~~lf~~~~~~~~~~l~~~~f~~~i~k~L~~~~~~~~~~~l~~~l~ 1231 (1326)
.+++|+-.+.|.+..|++++..||..+....+. ....+ ..-...
T Consensus 95 ~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~------------------~~~~~------------------~~~l~~ 138 (228)
T PF12348_consen 95 LLPPLLKKLGDSKKFIREAANNALDAIIESCSY------------------SPKIL------------------LEILSQ 138 (228)
T ss_dssp HHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--------------------HHH------------------HHHHHH
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHHHHHCCc------------------HHHHH------------------HHHHHH
Confidence 888999999999999999999999886643110 00110 111123
Q ss_pred hhcCCChhHHHHHHHHHhhhhccCc--hhhh-hhccHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHH
Q 000730 1232 AFEAPWPIIQANAIYFSSSILCLCD--DQHI-LSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLLKS 1298 (1326)
Q Consensus 1232 y~kS~~~~IR~aA~~fiG~l~~~~~--~~~~-~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k~ 1298 (1326)
..++..+.+|..++.++..++...+ .... .....+.+.+.+.. ++.|++|.||..|.+++..+++.
T Consensus 139 ~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~-~l~D~~~~VR~~Ar~~~~~l~~~ 207 (228)
T PF12348_consen 139 GLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVK-LLSDADPEVREAARECLWALYSH 207 (228)
T ss_dssp HTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHH-HHTSS-HHHHHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHH-HCCCCCHHHHHHHHHHHHHHHHH
Confidence 5678889999999999999888777 2222 12234778999999 89999999999999999988754
No 30
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.59 E-value=0.0011 Score=78.29 Aligned_cols=110 Identities=25% Similarity=0.296 Sum_probs=86.9
Q ss_pred HHHHHHHhhcCCCChhHHHHHhhhccCCcchhhhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhccCCcCCcchhHH
Q 000730 1026 QMVEALCRHVSDESPTVRGLCLRGLVQIPSIHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILL 1105 (1326)
Q Consensus 1026 ~~i~~L~~~l~D~~~~VR~lsLrGLgnl~~~~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~ 1105 (1326)
..+..+.+.+.|+++.||..+..-+|.++. +..++.+...+.|.+..|+..|..+|+++-.. .. .+.++
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~-------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~~---~a-~~~li 111 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELGS-------EEAVPLLRELLSDEDPRVRDAAADALGELGDP---EA-VPPLV 111 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhch-------HHHHHHHHHHhcCCCHHHHHHHHHHHHccCCh---hH-HHHHH
Confidence 356677788899999999999999999886 67788999999999999999999988887643 22 22232
Q ss_pred hHHhhhcCcCc-CCChHHHHHHHHHHHHhhhcCCCcchHHHHHHHHhhhhHHHHhccCCChhH
Q 000730 1106 NLSVRLRNLQV-SMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSV 1167 (1326)
Q Consensus 1106 ~l~~~lrpffe-de~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~LvpLLlHL~D~~~~V 1167 (1326)
.+++ |++..||..|...+|.+.. . +.+.||+-.++|++..+
T Consensus 112 -------~~l~~d~~~~vR~~aa~aL~~~~~-----~---------~a~~~l~~~l~~~~~~~ 153 (335)
T COG1413 112 -------ELLENDENEGVRAAAARALGKLGD-----E---------RALDPLLEALQDEDSGS 153 (335)
T ss_pred -------HHHHcCCcHhHHHHHHHHHHhcCc-----h---------hhhHHHHHHhccchhhh
Confidence 3344 8999999999999999764 1 34788999999988655
No 31
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.53 E-value=0.056 Score=66.35 Aligned_cols=512 Identities=14% Similarity=0.152 Sum_probs=302.8
Q ss_pred HHHHHHHHccCCh----hHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHhhhcccccccchhhHHHHHHHHHhhcCcHH
Q 000730 702 NRIVSSVCILLTK----DELVATLHSCTTAICDRTKQSAEGAIQAVVEFVTKRGNELSETDVSRTTQSLLSAAVHITDKH 777 (1326)
Q Consensus 702 ~~i~~~i~~~L~~----~el~~ll~~ll~~L~d~~~~~~~~A~~~L~~~l~~rg~~L~e~~V~~I~~~I~~~l~~i~~~~ 777 (1326)
++|+...++.|.. .-+.-++-..++=...+++.-..-|..-+|+++-.+...+--. +..-++.++. +..-.++.
T Consensus 153 ~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~-iD~Fle~lFa-lanD~~~e 230 (885)
T KOG2023|consen 153 QKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVH-IDKFLEILFA-LANDEDPE 230 (885)
T ss_pred HHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHH-HHHHHHHHHH-HccCCCHH
Confidence 4677766666655 3333445555666677788777888888999998887777322 5566666666 66888999
Q ss_pred HHHHHHHHHHHHhhccCchhHHHHHHhhhcccchhhhhccccCCCCchhHHHHhhcCcccHHHHHHHHHHHHccCCCccC
Q 000730 778 LRLETLGAISCLAENTNSKIVFNEVLATAGKDIVTKDISRLRGGWPMQDAFHAFSQHAVLSFLFLEHLISALNQTPFVKG 857 (1326)
Q Consensus 778 ~r~~~l~ai~~La~~h~~~vV~~~Ll~~~~~~~~~~~~~~L~~~lP~d~~W~aLa~d~~l~~~vL~~LL~~L~~~p~~~e 857 (1326)
+|+.+=+|+..|..-++++++ ..| ..|+++.|.+-+ +
T Consensus 231 VRk~vC~alv~Llevr~dkl~-phl------------------------------------~~IveyML~~tq------d 267 (885)
T KOG2023|consen 231 VRKNVCRALVFLLEVRPDKLV-PHL------------------------------------DNIVEYMLQRTQ------D 267 (885)
T ss_pred HHHHHHHHHHHHHHhcHHhcc-cch------------------------------------HHHHHHHHHHcc------C
Confidence 999999999999999988766 433 467777766411 1
Q ss_pred CCccCCCCCCCCCCCccchHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHHHHHhhhcccC----C-CC--------
Q 000730 858 DMEKGDYSSHSADTWIDDDILQAAILALTAFFRGGGKVGKKAVEKSYAPVLAALTLQLGSCHGL----A-SS-------- 924 (1326)
Q Consensus 858 ~~~~~~~~~~~~~~~~~~~~~laA~~aL~Ell~~~~~~~~~av~~~fp~Lf~aLL~ql~~~~~~----~-~~-------- 924 (1326)
. .. -+++-|--....+-..+ ..+..++.+.++|.-.|+-.+-|.=.- . ..
T Consensus 268 -~-------------dE-~VALEACEFwla~aeqp--i~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDr 330 (885)
T KOG2023|consen 268 -V-------------DE-NVALEACEFWLALAEQP--ICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDR 330 (885)
T ss_pred -c-------------ch-hHHHHHHHHHHHHhcCc--CcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCch
Confidence 0 01 13444444333333445 889999999999999998888773221 1 00
Q ss_pred -CCCChHHHHHHHHHHHHHhhcch----H-HHHHHHh---cCCCCChhhHHHHHHHHHHHHhhcCchhHHHHHHHHhhhh
Q 000730 925 -GQHEPLRAILTSFQAFCECVGDL----E-MRKILAR---DGEQNDKEKWINLIGDVAGCVSIKRPKEVQTICLILTKSI 995 (1326)
Q Consensus 925 -~~~~P~~~aleAlk~ll~~~g~~----~-~~~~L~~---~g~W~~~e~~~~gV~lLAr~m~~~~~~~~~~i~~~L~~~L 995 (1326)
+.+.|- ..-.-. ...|.. + .....+. .+.|+=...---.+..||... ....++.++-++-..|
T Consensus 331 eeDIkPR-fhksk~----~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf---~~elL~~l~PlLk~~L 402 (885)
T KOG2023|consen 331 EEDIKPR-FHKSKE----HGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVF---GDELLPILLPLLKEHL 402 (885)
T ss_pred hhhccch-hhhchh----ccCccccccccccccccccccccccccHhhccHHHHHHHHHhh---HHHHHHHHHHHHHHHc
Confidence 234441 110000 011111 1 1111111 135871111112233356532 2334555555666666
Q ss_pred ccccccchHHHHHHHHHhhhcCC--chhhHHHHHHHHHHhhcCCCChhHHHHHhhhccCCcch----hhhhhHHHHHHHH
Q 000730 996 NRQQRFQREAAAAALSEFVRYSG--GFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI----HIHQYATQVLSVI 1069 (1326)
Q Consensus 996 ~s~~~~~Ri~a~aflsELl~~~~--~~~~l~~~~i~~L~~~l~D~~~~VR~lsLrGLgnl~~~----~v~~~~~~lL~al 1069 (1326)
.+..=..|-+++..+...---|. .-..+ -.++-.|.+-+.|-.|.||.+..=-|+.-+.. .-.+|...+|..+
T Consensus 403 ~~~~W~vrEagvLAlGAIAEGcM~g~~p~L-peLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~l 481 (885)
T KOG2023|consen 403 SSEEWKVREAGVLALGAIAEGCMQGFVPHL-PELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGL 481 (885)
T ss_pred CcchhhhhhhhHHHHHHHHHHHhhhcccch-HHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHH
Confidence 66444445444433333222221 11222 24678899999999999999998888866543 4457889999999
Q ss_pred HhhccCCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCc---CCChHHHHHHHHHHHHhhhcCCCcchHHHH
Q 000730 1070 LALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQV---SMNVKMRRNAFAAFGALSNFGVGSQREAFL 1146 (1326)
Q Consensus 1070 l~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~l~~~lrpffe---de~~~vR~aAi~LfG~L~~~~~~~~~~~~~ 1146 (1326)
+..+-|.+..|.-.|-.+++.+-+..+.+ +.+++-.|..++--.|. +.|--+=.-||..|.+-+. ..-.+....
T Consensus 482 l~~llD~NK~VQEAAcsAfAtleE~A~~e-LVp~l~~IL~~l~~af~kYQ~KNLlILYDAIgtlAdsvg--~~Ln~~~Yi 558 (885)
T KOG2023|consen 482 LRRLLDSNKKVQEAACSAFATLEEEAGEE-LVPYLEYILDQLVFAFGKYQKKNLLILYDAIGTLADSVG--HALNKPAYI 558 (885)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHHhccch-hHHHHHHHHHHHHHHHHHHhhcceehHHHHHHHHHHHHH--HhcCcHHHH
Confidence 99999999999999999999998877654 44566666666544444 3444555566665555332 222333332
Q ss_pred HHHHhhhhHHH---HhccCCChhH----------HHH--------HHHHHHhhchhhhhhhhhhhccccCCCCC----CC
Q 000730 1147 EQIHAMLPRLI---LHIYDDDLSV----------RQA--------CRNTLKQVAPFMEIGVYGIFNSHCFNSDH----RS 1201 (1326)
Q Consensus 1147 eQv~~~LvpLL---lHL~D~~~~V----------~~a--------ck~tL~~~a~lL~~~l~~lf~~~~~~~~~----~l 1201 (1326)
+- .++||+ --|.|+++++ ++| |..++.||..++.--+..+...+ ++.. .-
T Consensus 559 qi---LmPPLi~KW~~lsd~DKdLfPLLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~~t~q~~~~~~--~~~~~~~pdk 633 (885)
T KOG2023|consen 559 QI---LMPPLIEKWELLSDSDKDLFPLLECLSSIASALGVGFLPYAQPVYQRCFRILQKTLQLLAKVQ--QDPTVEAPDK 633 (885)
T ss_pred HH---hccHHHHHHHhcCcccchHHHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHhcc--CCccccCCCc
Confidence 22 344443 4567777654 333 66677777777764222222221 1111 01
Q ss_pred ChHHHHHHHHHHHHHhCcchHHHHHHHH------HHhhcCCChhHHHHHHHHHhhhhccCchhhhhhccHHHHHHHHHHH
Q 000730 1202 DYETFVRDLTRQFVQHFPSRIDSYMGST------IQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVK 1275 (1326)
Q Consensus 1202 ~~~~f~~~i~k~L~~~~~~~~~~~l~~~------l~y~kS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~ 1275 (1326)
+|-..-.|+..-|++-.++.+..++.++ +.-++++-+.+|++|--++|-+.+..++.-+.. .+..+..+..
T Consensus 634 dfiI~sLDL~SGLaegLg~~ie~Lva~snl~~lll~C~~D~~peVRQS~FALLGDltk~c~~~v~p~--~~~fl~~lg~- 710 (885)
T KOG2023|consen 634 DFIIVSLDLLSGLAEGLGSHIEPLVAQSNLLDLLLQCLQDEVPEVRQSAFALLGDLTKACFEHVIPN--LADFLPILGA- 710 (885)
T ss_pred ceEEEeHHHHhHHHHHhhhchHHHhhhccHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHhccch--HHHHHHHHhh-
Confidence 1211224566667777777777666553 457899999999999999998877654333322 2333443332
Q ss_pred hccCCC-hhHHHHHHHHHHHHH
Q 000730 1276 LSQSAD-AIVRATCSSSLGWLL 1296 (1326)
Q Consensus 1276 Ll~Dpd-p~VR~~Aa~aL~~l~ 1296 (1326)
.-||+ -+|.-.|..|+|.+.
T Consensus 711 -Nl~~~~isv~nNA~WAiGeia 731 (885)
T KOG2023|consen 711 -NLNPENISVCNNAIWAIGEIA 731 (885)
T ss_pred -cCChhhchHHHHHHHHHHHHH
Confidence 22333 457778888888865
No 32
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.50 E-value=0.0051 Score=72.76 Aligned_cols=268 Identities=21% Similarity=0.189 Sum_probs=168.0
Q ss_pred HHHHHHHhhhhccccccchHHHHHHHHHhhhcCCchhhHHHHHHHHHHhhcCCCChhHHHHHhhhccCCcchhhhhhHHH
Q 000730 985 QTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSIHIHQYATQ 1064 (1326)
Q Consensus 985 ~~i~~~L~~~L~s~~~~~Ri~a~aflsELl~~~~~~~~l~~~~i~~L~~~l~D~~~~VR~lsLrGLgnl~~~~v~~~~~~ 1064 (1326)
+.....+...+.++....|..|+..+.++- .+..+..|.+.+.|+++.||..++.+||++.. +.
T Consensus 42 ~~~~~~~~~~l~~~~~~vr~~aa~~l~~~~---------~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~-------~~ 105 (335)
T COG1413 42 PEAADELLKLLEDEDLLVRLSAAVALGELG---------SEEAVPLLRELLSDEDPRVRDAAADALGELGD-------PE 105 (335)
T ss_pred hhhHHHHHHHHcCCCHHHHHHHHHHHhhhc---------hHHHHHHHHHHhcCCCHHHHHHHHHHHHccCC-------hh
Confidence 467778888888887777777776655431 14456688888999999999999999999986 45
Q ss_pred HHHHHHhhcc-CCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhh----cCcCcCCChHHHHHHHHHHHHhhhcCCC
Q 000730 1065 VLSVILALLD-DLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRL----RNLQVSMNVKMRRNAFAAFGALSNFGVG 1139 (1326)
Q Consensus 1065 lL~all~~L~-d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~l~~~l----rpffede~~~vR~aAi~LfG~L~~~~~~ 1139 (1326)
.++.++..+. |.+..|+..|..+|+++-..- .+.+++-.+.... -.-.++....+|.+|+..+|.+..
T Consensus 106 a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~---a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~~~---- 178 (335)
T COG1413 106 AVPPLVELLENDENEGVRAAAARALGKLGDER---ALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGELGD---- 178 (335)
T ss_pred HHHHHHHHHHcCCcHhHHHHHHHHHHhcCchh---hhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHcCC----
Confidence 5667777777 678889999999999987532 2222221110000 000011223789999999998764
Q ss_pred cchHHHHHHHHhhhhHHHHhccCCChhHHHHHHHHHHhhchhhhhhhhhhhccccCCCCCCCChHHHHHHHHHHHHHhCc
Q 000730 1140 SQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEIGVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFP 1219 (1326)
Q Consensus 1140 ~~~~~~~eQv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL~~~l~~lf~~~~~~~~~~l~~~~f~~~i~k~L~~~~~ 1219 (1326)
. ....++.-++.|++..|+.++..+|+..+....+-...++.. .+++ .. . .-......|.....
T Consensus 179 -~---------~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~~~~~~~l~~~--~~~~-~~--~-vr~~~~~~l~~~~~ 242 (335)
T COG1413 179 -P---------EAIPLLIELLEDEDADVRRAAASALGQLGSENVEAADLLVKA--LSDE-SL--E-VRKAALLALGEIGD 242 (335)
T ss_pred -h---------hhhHHHHHHHhCchHHHHHHHHHHHHHhhcchhhHHHHHHHH--hcCC-CH--H-HHHHHHHHhcccCc
Confidence 1 245677888999999999999999999887642311111111 1111 10 1 11122233333333
Q ss_pred chHHHHHHHHHHhhcCCChhHHHHHHHHHhhhhccCchhhhhhccHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHc
Q 000730 1220 SRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLLKSI 1299 (1326)
Q Consensus 1220 ~~~~~~l~~~l~y~kS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k~~ 1299 (1326)
.. -...-..++++....++..+....| ..+...-...+.. ...|.+..+|..++.+++......
T Consensus 243 ~~---~~~~l~~~l~~~~~~~~~~~~~~~~------------~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~l~~~~~~~ 306 (335)
T COG1413 243 EE---AVDALAKALEDEDVILALLAAAALG------------ALDLAEAALPLLL-LLIDEANAVRLEAALALGQIGQEK 306 (335)
T ss_pred ch---hHHHHHHHHhccchHHHHHHHHHhc------------ccCchhhHHHHHH-HhhcchhhHHHHHHHHHHhhcccc
Confidence 22 2233344677777777776665555 0111222333444 578899999999999988888666
Q ss_pred cccccccc
Q 000730 1300 NSHSWRST 1307 (1326)
Q Consensus 1300 ~~~~~~~~ 1307 (1326)
...-|-..
T Consensus 307 ~~~a~~~~ 314 (335)
T COG1413 307 AVAALLLA 314 (335)
T ss_pred hHHHHHHH
Confidence 65555433
No 33
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.48 E-value=0.02 Score=71.21 Aligned_cols=248 Identities=16% Similarity=0.137 Sum_probs=163.5
Q ss_pred HHHHHhhcCCCChhHHHHHhhhccCCcchhhhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhccCCcCCcchhHHhH
Q 000730 1028 VEALCRHVSDESPTVRGLCLRGLVQIPSIHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNL 1107 (1326)
Q Consensus 1028 i~~L~~~l~D~~~~VR~lsLrGLgnl~~~~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~l 1107 (1326)
++.+.+.++|||+.+|..|||.|+.|-.. ...|.+|-|+-.+-.|...-|+-.|..++-|+-. ++...-. ++
T Consensus 110 IntfQk~L~DpN~LiRasALRvlSsIRvp---~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYs-Ld~e~k~----qL 181 (968)
T KOG1060|consen 110 INTFQKALKDPNQLIRASALRVLSSIRVP---MIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYS-LDPEQKD----QL 181 (968)
T ss_pred HHHHHhhhcCCcHHHHHHHHHHHHhcchh---hHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhc-CChhhHH----HH
Confidence 78999999999999999999999988643 3357778888888888778899999999999754 3433322 33
Q ss_pred HhhhcCcCcCCChHHHHHHHHHHHHhhhc------------CCC-----cch----------------------------
Q 000730 1108 SVRLRNLQVSMNVKMRRNAFAAFGALSNF------------GVG-----SQR---------------------------- 1142 (1326)
Q Consensus 1108 ~~~lrpffede~~~vR~aAi~LfG~L~~~------------~~~-----~~~---------------------------- 1142 (1326)
-.-|..++.|-++.|=.+|..+|-.++.- |.. .|-
T Consensus 182 ~e~I~~LLaD~splVvgsAv~AF~evCPerldLIHknyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~ 261 (968)
T KOG1060|consen 182 EEVIKKLLADRSPLVVGSAVMAFEEVCPERLDLIHKNYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLED 261 (968)
T ss_pred HHHHHHHhcCCCCcchhHHHHHHHHhchhHHHHhhHHHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCCcccccccccc
Confidence 34456678888889988888888766530 000 000
Q ss_pred --------------------HHHHHHHHhhhhHHHHhccCCChhHHHHHHHHHHhhchhhhh-hh-hhhhccccCCCCCC
Q 000730 1143 --------------------EAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEI-GV-YGIFNSHCFNSDHR 1200 (1326)
Q Consensus 1143 --------------------~~~~eQv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL~~-~l-~~lf~~~~~~~~~~ 1200 (1326)
++=..-++++.-||+ +-.||.|+.||..++.++||..+. ++ +++.+. +.+.+.
T Consensus 262 n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl---~S~n~sVVmA~aql~y~lAP~~~~~~i~kaLvrL--Lrs~~~ 336 (968)
T KOG1060|consen 262 NGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLL---QSRNPSVVMAVAQLFYHLAPKNQVTKIAKALVRL--LRSNRE 336 (968)
T ss_pred CcccccccccccccCCCcccCccHHHHHHhccHHH---hcCCcHHHHHHHhHHHhhCCHHHHHHHHHHHHHH--HhcCCc
Confidence 000112345555554 467899999999999999998777 44 455442 222232
Q ss_pred CChHHHHHH------------------------------HHHHHH---HhCcchHHHHHHHHHHhhcCCChhHHHHHHHH
Q 000730 1201 SDYETFVRD------------------------------LTRQFV---QHFPSRIDSYMGSTIQAFEAPWPIIQANAIYF 1247 (1326)
Q Consensus 1201 l~~~~f~~~------------------------------i~k~L~---~~~~~~~~~~l~~~l~y~kS~~~~IR~aA~~f 1247 (1326)
..| ..+.. ++|.=+ --.-..+...+.....|.+|+...+=++|+.-
T Consensus 337 vqy-vvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~esni~~ILrE~q~YI~s~d~~faa~aV~A 415 (968)
T KOG1060|consen 337 VQY-VVLQNIATISIKRPTLFEPHLKSFFVRSSDPTQVKILKLEILSNLANESNISEILRELQTYIKSSDRSFAAAAVKA 415 (968)
T ss_pred chh-hhHHHHHHHHhcchhhhhhhhhceEeecCCHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCchhHHHHHHHH
Confidence 222 11111 111100 01235566677777889999999888889999
Q ss_pred HhhhhccCchhhhhhccHHHHHHHHHHHhccCCChhHHHHHHHHHHHHH
Q 000730 1248 SSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLL 1296 (1326)
Q Consensus 1248 iG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~ 1296 (1326)
||-..+....- .+...+.|.. |++..|..|-+.|.-.+..|.
T Consensus 416 iGrCA~~~~sv------~~tCL~gLv~-Llsshde~Vv~eaV~vIk~Ll 457 (968)
T KOG1060|consen 416 IGRCASRIGSV------TDTCLNGLVQ-LLSSHDELVVAEAVVVIKRLL 457 (968)
T ss_pred HHHHHHhhCch------hhHHHHHHHH-HHhcccchhHHHHHHHHHHHH
Confidence 99776654311 1445677777 677778877777766665544
No 34
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.44 E-value=0.0024 Score=77.69 Aligned_cols=272 Identities=17% Similarity=0.143 Sum_probs=190.6
Q ss_pred HhhhhccccccchHHHHHHHHHhhhcCCc-hhhHHHH-HHHHHHhhcCCCCh-hHHHHHhhhccCCcchhh----hhhHH
Q 000730 991 LTKSINRQQRFQREAAAAALSEFVRYSGG-FDSLLEQ-MVEALCRHVSDESP-TVRGLCLRGLVQIPSIHI----HQYAT 1063 (1326)
Q Consensus 991 L~~~L~s~~~~~Ri~a~aflsELl~~~~~-~~~l~~~-~i~~L~~~l~D~~~-~VR~lsLrGLgnl~~~~v----~~~~~ 1063 (1326)
++..+.|+++.-+--|++.+.-....+.. ...+++. ++..|+.-+..+.+ .+.+-+.-.|.|+-.+|. -.-..
T Consensus 157 fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~ 236 (514)
T KOG0166|consen 157 FIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVA 236 (514)
T ss_pred HHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHH
Confidence 77888899999999999999988776533 3344444 67777777777776 444455567777755421 12246
Q ss_pred HHHHHHHhhccCCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCcCCChHHHHHHHHHHHHhhhcCCCcchH
Q 000730 1064 QVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQRE 1143 (1326)
Q Consensus 1064 ~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~l~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~~ 1143 (1326)
.+|+++...++..|+.|...|..+|+-+.+...+..---+-..++-++-+++++....++..|.+..|.++. |.+
T Consensus 237 ~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvt---G~d-- 311 (514)
T KOG0166|consen 237 PILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVT---GSD-- 311 (514)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceee---ccH--
Confidence 789999999999999999999999999987655443333344567788889999999999999999999765 433
Q ss_pred HHHHH-HHhhhhHHHHhccC--CChhHHHHHHHHHHhhchhhhh--hhhhhhccccCCCCCCCChHHHHHHHHHHHHHhC
Q 000730 1144 AFLEQ-IHAMLPRLILHIYD--DDLSVRQACRNTLKQVAPFMEI--GVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHF 1218 (1326)
Q Consensus 1144 ~~~eQ-v~~~LvpLLlHL~D--~~~~V~~ack~tL~~~a~lL~~--~l~~lf~~~~~~~~~~l~~~~f~~~i~k~L~~~~ 1218 (1326)
...+. +-...+|-+.+|-- +...+++.|-+|+..++. |. .+.+++...
T Consensus 312 ~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItA--G~~~qiqaVida~------------------------- 364 (514)
T KOG0166|consen 312 EQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITA--GNQEQIQAVIDAN------------------------- 364 (514)
T ss_pred HHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhc--CCHHHHHHHHHcc-------------------------
Confidence 22222 22455555555544 333478877788777665 33 444444321
Q ss_pred cchHHHHHHHHHHhhcCCChhHHHHHHHHHhhhhccCchhhhhhccHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHH
Q 000730 1219 PSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLLKS 1298 (1326)
Q Consensus 1219 ~~~~~~~l~~~l~y~kS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k~ 1298 (1326)
++-..+.-+++..-.+|..|+|-|+-+......++...+-..-+++.|-. |+.=+|+.+-..+-.||+.+.|.
T Consensus 365 ------l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcd-lL~~~D~~ii~v~Ld~l~nil~~ 437 (514)
T KOG0166|consen 365 ------LIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCD-LLTCPDVKIILVALDGLENILKV 437 (514)
T ss_pred ------cHHHHHHHHhccchHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhh-cccCCChHHHHHHHHHHHHHHHH
Confidence 11122334555667899999999998877777666655533347888999 77778888888899999999876
Q ss_pred ccc
Q 000730 1299 INS 1301 (1326)
Q Consensus 1299 ~~~ 1301 (1326)
-..
T Consensus 438 ~e~ 440 (514)
T KOG0166|consen 438 GEA 440 (514)
T ss_pred HHH
Confidence 543
No 35
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=97.43 E-value=0.027 Score=68.24 Aligned_cols=359 Identities=14% Similarity=0.136 Sum_probs=219.3
Q ss_pred CCChH-H-HHHHHHHHHHHhhcchHHHHHHHhc----CCCCChhhHHHHHHHHHHHHhhcCchhHHHHHHHHhhhhcccc
Q 000730 926 QHEPL-R-AILTSFQAFCECVGDLEMRKILARD----GEQNDKEKWINLIGDVAGCVSIKRPKEVQTICLILTKSINRQQ 999 (1326)
Q Consensus 926 ~~~P~-~-~aleAlk~ll~~~g~~~~~~~L~~~----g~W~~~e~~~~gV~lLAr~m~~~~~~~~~~i~~~L~~~L~s~~ 999 (1326)
..+|. | .+--|+-.+-...|-.++.-.++.- ..|+...|-+.-++.++--+-...-+|+.+++..+...|....
T Consensus 292 ~~deYVRnvt~ra~~vva~algv~~llpfl~a~c~SrkSw~aRhTgiri~qqI~~llG~s~l~hl~~l~~ci~~~l~D~~ 371 (975)
T COG5181 292 SKDEYVRNVTGRAVGVVADALGVEELLPFLEALCGSRKSWEARHTGIRIAQQICELLGRSRLSHLGPLLKCISKLLKDRS 371 (975)
T ss_pred cccHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHhcCccchhhhchhhHHHHHHHHHhCccHHhhhhhHHHHHHHHhhccc
Confidence 34452 3 3444666777778888888888752 2687656555555555544444455799999999999999999
Q ss_pred ccchHHHHHHHHHhhhcC-CchhhHHHHHHHHHHhhcCCCChhHHHHHhhhccCCcc----hhhhhhHHHHHHHHHhhcc
Q 000730 1000 RFQREAAAAALSEFVRYS-GGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPS----IHIHQYATQVLSVILALLD 1074 (1326)
Q Consensus 1000 ~~~Ri~a~aflsELl~~~-~~~~~l~~~~i~~L~~~l~D~~~~VR~lsLrGLgnl~~----~~v~~~~~~lL~all~~L~ 1074 (1326)
-..|+.++-.++-+-... .-.-...+.++.-|-++.+..-..+=..-|++.|.|-+ +-...+......-+...|+
T Consensus 372 ~~vRi~tA~alS~lae~~~Pygie~fd~vl~pLw~g~~~hrgk~l~sfLkA~g~iiplm~peYa~h~tre~m~iv~ref~ 451 (975)
T COG5181 372 RFVRIDTANALSYLAELVGPYGIEQFDEVLCPLWEGASQHRGKELVSFLKAMGFIIPLMSPEYACHDTREHMEIVFREFK 451 (975)
T ss_pred eeeeehhHhHHHHHHHhcCCcchHHHHHHHHHHHHHHHhcCCchHHHHHHHhccccccCChHhhhhhHHHHHHHHHHHhC
Confidence 999999887766554421 11123345566677777666655666667778876531 0011111112222222232
Q ss_pred CCChh------------------------------------------------HHHHHHHHHHHHhccCCcCCcchhHHh
Q 000730 1075 DLDES------------------------------------------------VQLTAVSCLLTILKSSSKDAVEPILLN 1106 (1326)
Q Consensus 1075 d~d~~------------------------------------------------V~leAm~~L~~lL~~l~~~~~~~~l~~ 1106 (1326)
.+|+. ++..+-..|++-+.. ..
T Consensus 452 spdeemkk~~l~v~~~C~~v~~~tp~~lr~~v~pefF~~fw~rr~A~dr~~~k~v~~ttvilAk~~g~----------~~ 521 (975)
T COG5181 452 SPDEEMKKDLLVVERICDKVGTDTPWKLRDQVSPEFFSPFWRRRSAGDRRSYKQVVLTTVILAKMGGD----------PR 521 (975)
T ss_pred CchhhcchhHHHHHHHHhccCCCCHHHHHHhhcHHhhchHHHhhhcccccccceeehhHHHHHHHcCC----------hH
Confidence 22221 222233333333221 24
Q ss_pred HHhhhcCcCcCCChHHHHHHHH----HHHHhhhcCCCc---------chHHHHHH-------------------------
Q 000730 1107 LSVRLRNLQVSMNVKMRRNAFA----AFGALSNFGVGS---------QREAFLEQ------------------------- 1148 (1326)
Q Consensus 1107 l~~~lrpffede~~~vR~aAi~----LfG~L~~~~~~~---------~~~~~~eQ------------------------- 1148 (1326)
+..++...|.||.+..|..+.. .||.|...+-+. --.+|.||
T Consensus 522 v~~kil~~~~De~ep~r~m~a~~vsri~~~lg~~~~dErleerl~d~il~Afqeq~~t~~~il~~f~tv~vsl~~r~kp~ 601 (975)
T COG5181 522 VSRKILEYYSDEPEPYRKMNAGLVSRIFSRLGRLGFDERLEERLYDSILNAFQEQDTTVGLILPCFSTVLVSLEFRGKPH 601 (975)
T ss_pred HHHHHHhhccCCcchhhhhhhHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhccccccEEEecccceeeehhhccCcc
Confidence 5566778899999888877764 466666533221 11345555
Q ss_pred HHhhhhHHHHhccCCChhHHHHHHHHHHhhchhhhh-hhhhhhccc--cCCCCCCCChHHHH----HHHHHHHHHhCc--
Q 000730 1149 IHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEI-GVYGIFNSH--CFNSDHRSDYETFV----RDLTRQFVQHFP-- 1219 (1326)
Q Consensus 1149 v~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL~~-~l~~lf~~~--~~~~~~~l~~~~f~----~~i~k~L~~~~~-- 1219 (1326)
.-..+-..|-||+.+.|+|+..+..+...+++.|+. .=.+++.+. -+-+.-+=.|++.+ +.+|..-...--
T Consensus 602 l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~ 681 (975)
T COG5181 602 LSMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYENLGEDYPEVLGSILKAICSIYSVHRFRS 681 (975)
T ss_pred hHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhcccc
Confidence 111223457799999999999999999999998883 111122111 01111122355544 444443332222
Q ss_pred --chHHHHHHHHHHhhcCCChhHHHHHHHHHhhhhccCchhhhhhcc-HHH--HHHHHHHHhccCCChhHHHHHHHHHHH
Q 000730 1220 --SRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLF-YTQ--VFGLLVVKLSQSADAIVRATCSSSLGW 1294 (1326)
Q Consensus 1220 --~~~~~~l~~~l~y~kS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~-~e~--l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~ 1294 (1326)
--++..+-+..+-+++-+..|-.+-+-|+|.+..+.+. .++ .|| ++=.|.+ +++.-.-.+|+.|.+++|+
T Consensus 682 mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~pe----yi~~rEWMRIcfeLvd-~Lks~nKeiRR~A~~tfG~ 756 (975)
T COG5181 682 MQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPE----YIGVREWMRICFELVD-SLKSWNKEIRRNATETFGC 756 (975)
T ss_pred cCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcc----cCCHHHHHHHHHHHHH-HHHHhhHHHHHhhhhhhhh
Confidence 25677777888899999999999999999999888873 122 244 4455888 7888999999999999999
Q ss_pred HHHHc
Q 000730 1295 LLKSI 1299 (1326)
Q Consensus 1295 l~k~~ 1299 (1326)
+-|..
T Consensus 757 Is~ai 761 (975)
T COG5181 757 ISRAI 761 (975)
T ss_pred HHhhc
Confidence 87654
No 36
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.41 E-value=0.5 Score=59.42 Aligned_cols=333 Identities=18% Similarity=0.238 Sum_probs=187.3
Q ss_pred HHHHHhhHHHHHHHHHHhhhcccCCCCCCCChHHHHHHHHHHHHHhhcchH-------HHHHHHh--cCCCC--ChhhHH
Q 000730 898 KAVEKSYAPVLAALTLQLGSCHGLASSGQHEPLRAILTSFQAFCECVGDLE-------MRKILAR--DGEQN--DKEKWI 966 (1326)
Q Consensus 898 ~av~~~fp~Lf~aLL~ql~~~~~~~~~~~~~P~~~aleAlk~ll~~~g~~~-------~~~~L~~--~g~W~--~~e~~~ 966 (1326)
+.+.+.+-.++.+. ++|.++.+.-+-.| +-|+++|..+-+... ..+++.. ...|. +.+--+
T Consensus 164 evl~~~sN~iLtaI------v~gmrk~e~s~~vR--Laa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~~i~~ 235 (859)
T KOG1241|consen 164 EVLEQQSNDILTAI------VQGMRKEETSAAVR--LAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPDEEIQV 235 (859)
T ss_pred HHHHHHHhHHHHHH------HhhccccCCchhHH--HHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCcHHHHH
Confidence 36667777776655 55666654333343 334555554433322 2222222 23466 333334
Q ss_pred HHHHHHHHHHhhcC---chhH-HHHHHHHhhhhccccccchHHHHHHHHHhhhcCCchhhHHHHHHHHHHhhcCCCChhH
Q 000730 967 NLIGDVAGCVSIKR---PKEV-QTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTV 1042 (1326)
Q Consensus 967 ~gV~lLAr~m~~~~---~~~~-~~i~~~L~~~L~s~~~~~Ri~a~aflsELl~~~~~~~~l~~~~i~~L~~~l~D~~~~V 1042 (1326)
-+.+=|.|-|.-|. .+.+ ++++..-+..++|+++..-+-|+-|-+-. |..+-.+....-..-..++. |.-
T Consensus 236 aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsti---ceEEiD~~~e~~e~~d~~~~---p~~ 309 (859)
T KOG1241|consen 236 AAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTI---CEEEIDLAIEYGEAVDQGLP---PSS 309 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhcCCC---chh
Confidence 44455666666542 3444 34888888888988888888887776532 11110110000011111111 111
Q ss_pred HHHHhhhccCCcchhhhhhHHHHHHHHHhhccCCC----h---hHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcC
Q 000730 1043 RGLCLRGLVQIPSIHIHQYATQVLSVILALLDDLD----E---SVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQ 1115 (1326)
Q Consensus 1043 R~lsLrGLgnl~~~~v~~~~~~lL~all~~L~d~d----~---~V~leAm~~L~~lL~~l~~~~~~~~l~~l~~~lrpff 1115 (1326)
...+ +.-.+.++|-+++.|...| + ++.+.|=.+|.-.-+..+++-+.+++ ||+
T Consensus 310 ~~fa------------~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~~Vl--------~Fi 369 (859)
T KOG1241|consen 310 KYFA------------RQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIVPHVL--------PFI 369 (859)
T ss_pred hHHH------------HHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccchhhhH--------HHH
Confidence 1111 1122445566666554422 2 27788888888877777766555443 555
Q ss_pred c----CCChHHHHHHHHHHHHhhhcCCCcchHHHHHHHHhhhhHHHHhccCCChhHHHHHHHHHHhhchhhhh-hhhhhh
Q 000730 1116 V----SMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEI-GVYGIF 1190 (1326)
Q Consensus 1116 e----de~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL~~-~l~~lf 1190 (1326)
+ +++..-|.+|+-.||.+.. |.+..-++--|.+.++.++.-+.|++--|+..+..||++++-++-- -.++.
T Consensus 370 ee~i~~pdwr~reaavmAFGSIl~---gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~- 445 (859)
T KOG1241|consen 370 EENIQNPDWRNREAAVMAFGSILE---GPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQE- 445 (859)
T ss_pred HHhcCCcchhhhhHHHHHHHhhhc---CCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHh-
Confidence 4 7899999999999999986 7777778888888999999999999999999999999999876543 11111
Q ss_pred ccccCCCCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHHhhcCCChhHHHHHHHHHhhhhccCc----hh---hhhhc
Q 000730 1191 NSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCD----DQ---HILSL 1263 (1326)
Q Consensus 1191 ~~~~~~~~~~l~~~~f~~~i~k~L~~~~~~~~~~~l~~~l~y~kS~~~~IR~aA~~fiG~l~~~~~----~~---~~~~~ 1263 (1326)
-.......++ .-++ ..|++=.|+.|-.-.+..... .. ...+.
T Consensus 446 ---------------~l~~~l~~l~---------------~gL~-DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~ 494 (859)
T KOG1241|consen 446 ---------------LLQSKLSALL---------------EGLN-DEPRVASNVCWAFISLAEAAYEAAVSNGQTDPATP 494 (859)
T ss_pred ---------------hhhHHHHHHH---------------HHhh-hCchHHHHHHHHHHHHHHHHHHhccCCCCCCccch
Confidence 1011111111 1222 134444445543333332111 01 00112
Q ss_pred cHHHHHHHHHHHhcc--C-CChhHHHHHHHHHHHHHHHcc
Q 000730 1264 FYTQVFGLLVVKLSQ--S-ADAIVRATCSSSLGWLLKSIN 1300 (1326)
Q Consensus 1264 ~~e~l~~~L~~~Ll~--D-pdp~VR~~Aa~aL~~l~k~~~ 1300 (1326)
-.+.+++.|.+ --. | .+...|..|=+||+.+.|.|-
T Consensus 495 ~y~~ii~~Ll~-~tdr~dgnqsNLR~AAYeALmElIk~st 533 (859)
T KOG1241|consen 495 FYEAIIGSLLK-VTDRADGNQSNLRSAAYEALMELIKNST 533 (859)
T ss_pred hHHHHHHHHHh-hccccccchhhHHHHHHHHHHHHHHcCc
Confidence 34666676666 332 3 678899999999999888764
No 37
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.27 E-value=0.0019 Score=71.95 Aligned_cols=181 Identities=23% Similarity=0.260 Sum_probs=113.3
Q ss_pred chHHHHHHHHHhhhcC--Cc-hhhH---HHHHHHHHHhhcCCCChhHHHHHhhhccCCcch---hhhhhHHHHHHHHHhh
Q 000730 1002 QREAAAAALSEFVRYS--GG-FDSL---LEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI---HIHQYATQVLSVILAL 1072 (1326)
Q Consensus 1002 ~Ri~a~aflsELl~~~--~~-~~~l---~~~~i~~L~~~l~D~~~~VR~lsLrGLgnl~~~---~v~~~~~~lL~all~~ 1072 (1326)
.|+.|.--+-.++... .. ...+ ++.++..+...+.|.+..|-+.++.-++.++.+ .+..|...+++.++.-
T Consensus 23 ~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~Ll~~ 102 (228)
T PF12348_consen 23 ERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILLPPLLKK 102 (228)
T ss_dssp HHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHH
Confidence 3677777777777654 11 1222 234557888899999999999999999988754 6788999999999999
Q ss_pred ccCCChhHHHHHHHHHHHHhccCC-cCCcchhHHhHHhhhcCcCcCCChHHHHHHHHHHHHhhhcCC--Cc--chHHHHH
Q 000730 1073 LDDLDESVQLTAVSCLLTILKSSS-KDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGV--GS--QREAFLE 1147 (1326)
Q Consensus 1073 L~d~d~~V~leAm~~L~~lL~~l~-~~~~~~~l~~l~~~lrpffede~~~vR~aAi~LfG~L~~~~~--~~--~~~~~~e 1147 (1326)
+.|....|.-.|..+|..+....+ ...+ + ...+.+...+.++.+|..+...+..+..... .. ......+
T Consensus 103 ~~~~~~~i~~~a~~~L~~i~~~~~~~~~~---~---~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~ 176 (228)
T PF12348_consen 103 LGDSKKFIREAANNALDAIIESCSYSPKI---L---LEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLK 176 (228)
T ss_dssp GG---HHHHHHHHHHHHHHHTTS-H--HH---H---HHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHH
T ss_pred HccccHHHHHHHHHHHHHHHHHCCcHHHH---H---HHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHH
Confidence 999888899999999999998765 2211 1 2334567899999999999999999987433 11 1112223
Q ss_pred HHHhhhhHHHHhccCCChhHHHHHHHHHHhhchhhhhhhhhhhc
Q 000730 1148 QIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEIGVYGIFN 1191 (1326)
Q Consensus 1148 Qv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL~~~l~~lf~ 1191 (1326)
++.. .+.-.+.|.+++||++||.+|.......+-.-..+++
T Consensus 177 ~l~~---~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a~~~~~ 217 (228)
T PF12348_consen 177 QLVK---ALVKLLSDADPEVREAARECLWALYSHFPERAESILS 217 (228)
T ss_dssp HHHH---HHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH-----
T ss_pred HHHH---HHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhhccchh
Confidence 3333 4445568999999999999999886654443344443
No 38
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.22 E-value=0.00064 Score=63.67 Aligned_cols=86 Identities=29% Similarity=0.371 Sum_probs=63.1
Q ss_pred HHHHhhc-CCCChhHHHHHhhhccCCcchhhhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhccCCcCCcchhHHhH
Q 000730 1029 EALCRHV-SDESPTVRGLCLRGLVQIPSIHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNL 1107 (1326)
Q Consensus 1029 ~~L~~~l-~D~~~~VR~lsLrGLgnl~~~~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~l 1107 (1326)
..|.+.+ +|+++.||.-+++.||++.. +.+++.+...+.|.+..|+..|..+|+++.. ...-+.+..+
T Consensus 2 ~~L~~~l~~~~~~~vr~~a~~~L~~~~~-------~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~----~~~~~~L~~~ 70 (88)
T PF13646_consen 2 PALLQLLQNDPDPQVRAEAARALGELGD-------PEAIPALIELLKDEDPMVRRAAARALGRIGD----PEAIPALIKL 70 (88)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHCCTH-------HHHHHHHHHHHTSSSHHHHHHHHHHHHCCHH----HHTHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcCC-------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----HHHHHHHHHH
Confidence 3566667 89999999999999998764 4668888888888888899999999998742 2233333332
Q ss_pred HhhhcCcCcCCChHHHHHHHHHHH
Q 000730 1108 SVRLRNLQVSMNVKMRRNAFAAFG 1131 (1326)
Q Consensus 1108 ~~~lrpffede~~~vR~aAi~LfG 1131 (1326)
+.++++..||.+|+..+|
T Consensus 71 ------l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 71 ------LQDDDDEVVREAAAEALG 88 (88)
T ss_dssp ------HTC-SSHHHHHHHHHHHH
T ss_pred ------HcCCCcHHHHHHHHhhcC
Confidence 345566777999988776
No 39
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.18 E-value=0.00073 Score=57.87 Aligned_cols=55 Identities=24% Similarity=0.320 Sum_probs=46.2
Q ss_pred hhHHHHHHHHHhhhhccCchhhhhhccHHHHHHHHHHHhccCCChhHHHHHHHHHHHH
Q 000730 1238 PIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWL 1295 (1326)
Q Consensus 1238 ~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l 1295 (1326)
+.+|.+|++.+|.+.+..+..... ....++..|.. +++|+++.||..|+.|||.|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~--~~~~~~~~L~~-~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQP--YLPELLPALIP-LLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHH--HHHHHHHHHHH-HTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHH--HHHHHHHHHHH-HHcCCCHHHHHHHHHHHhcC
Confidence 469999999999987777654433 45789999999 89999999999999999865
No 40
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=97.15 E-value=0.03 Score=70.05 Aligned_cols=280 Identities=19% Similarity=0.224 Sum_probs=178.8
Q ss_pred HHHHHHHhhhhccccccchHHHHHHHHHhhhcCCchhhHH-HHHHHHHHhhcCCCChhHHHHHhhhccCCcch--hhhhh
Q 000730 985 QTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLL-EQMVEALCRHVSDESPTVRGLCLRGLVQIPSI--HIHQY 1061 (1326)
Q Consensus 985 ~~i~~~L~~~L~s~~~~~Ri~a~aflsELl~~~~~~~~l~-~~~i~~L~~~l~D~~~~VR~lsLrGLgnl~~~--~v~~~ 1061 (1326)
..++..++..+.+++......|+.++..+..++.....+. ...+..|.+-...+|..+|.-++.-+.+++.+ ....+
T Consensus 118 ~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~ 197 (503)
T PF10508_consen 118 NELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEA 197 (503)
T ss_pred ccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 5677888888999999999999999999998765533332 22466677767777888888788878888654 33333
Q ss_pred HHH--HHHHHHhhccCCChhHHHHHHHHHHHHhccCCcCCcchhH-HhHHhhhcCcCcCCChHHHHHHH------HHHHH
Q 000730 1062 ATQ--VLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPIL-LNLSVRLRNLQVSMNVKMRRNAF------AAFGA 1132 (1326)
Q Consensus 1062 ~~~--lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l-~~l~~~lrpffede~~~vR~aAi------~LfG~ 1132 (1326)
... +++.++..|++.|--|.+.++..|+.+.. ...+..-+. ..+..+|-..+.+...+-|..++ ..||.
T Consensus 198 ~~~sgll~~ll~eL~~dDiLvqlnalell~~La~--~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~ 275 (503)
T PF10508_consen 198 VVNSGLLDLLLKELDSDDILVQLNALELLSELAE--TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGN 275 (503)
T ss_pred HHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc--ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHH
Confidence 333 89999999999777799999999999976 222222111 01222233333332222244444 45666
Q ss_pred hhhcCCCcchHHHHHHHHhhhhHHHHhc-cCCChhHHHHHHHHHHhhchhhhhhhhhhhccccCCCCCCCChHHHHHHHH
Q 000730 1133 LSNFGVGSQREAFLEQIHAMLPRLILHI-YDDDLSVRQACRNTLKQVAPFMEIGVYGIFNSHCFNSDHRSDYETFVRDLT 1211 (1326)
Q Consensus 1133 L~~~~~~~~~~~~~eQv~~~LvpLLlHL-~D~~~~V~~ack~tL~~~a~lL~~~l~~lf~~~~~~~~~~l~~~~f~~~i~ 1211 (1326)
++.+ ....+. +.+..++..++++ +..++.....+=.||+.+|... +| .
T Consensus 276 la~~----~~~~v~-~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~--------------~G------------~ 324 (503)
T PF10508_consen 276 LARV----SPQEVL-ELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTV--------------EG------------K 324 (503)
T ss_pred HHhc----ChHHHH-HHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCH--------------HH------------H
Confidence 6653 111222 2233444444554 5678888888888999877521 11 1
Q ss_pred HHHHHhCcchHHHHHHHHHHhhcCCChhHHHHHHHHHhhhhccCch---hhhhhccHHH--------HHHHHHHHhccCC
Q 000730 1212 RQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDD---QHILSLFYTQ--------VFGLLVVKLSQSA 1280 (1326)
Q Consensus 1212 k~L~~~~~~~~~~~l~~~l~y~kS~~~~IR~aA~~fiG~l~~~~~~---~~~~~~~~e~--------l~~~L~~~Ll~Dp 1280 (1326)
..|..++++.+...+.....+.++...++|..|..-++.++...++ +....+...+ ....+.. +.+-|
T Consensus 325 ~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~-~~~qP 403 (503)
T PF10508_consen 325 QLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMS-LLKQP 403 (503)
T ss_pred HHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHH-HhcCC
Confidence 2234667777888888888999999999999998888887654432 2221121111 1115666 77889
Q ss_pred ChhHHHHHHHHHHHHHHH
Q 000730 1281 DAIVRATCSSSLGWLLKS 1298 (1326)
Q Consensus 1281 dp~VR~~Aa~aL~~l~k~ 1298 (1326)
=|.+|+.|=.-|.-+..+
T Consensus 404 F~elr~a~~~~l~~l~~~ 421 (503)
T PF10508_consen 404 FPELRCAAYRLLQALAAQ 421 (503)
T ss_pred chHHHHHHHHHHHHHhcC
Confidence 999999877666555543
No 41
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.06 E-value=0.0043 Score=58.01 Aligned_cols=86 Identities=21% Similarity=0.302 Sum_probs=61.8
Q ss_pred hHHHHhc-cCCChhHHHHHHHHHHhhchhhhhhhhhhhccccCCCCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHHh
Q 000730 1154 PRLILHI-YDDDLSVRQACRNTLKQVAPFMEIGVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQA 1232 (1326)
Q Consensus 1154 vpLLlHL-~D~~~~V~~ack~tL~~~a~lL~~~l~~lf~~~~~~~~~~l~~~~f~~~i~k~L~~~~~~~~~~~l~~~l~y 1232 (1326)
.+|+-.| +|+++.|+..+-.+|+..+. ++. +...+..
T Consensus 2 ~~L~~~l~~~~~~~vr~~a~~~L~~~~~-----------------------~~~-------------------~~~L~~~ 39 (88)
T PF13646_consen 2 PALLQLLQNDPDPQVRAEAARALGELGD-----------------------PEA-------------------IPALIEL 39 (88)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHCCTH-----------------------HHH-------------------HHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcCC-----------------------HhH-------------------HHHHHHH
Confidence 4566667 89999999988888874221 112 1222346
Q ss_pred hcCCChhHHHHHHHHHhhhhccCchhhhhhccHHHHHHHHHHHhccCCChhHHHHHHHHHH
Q 000730 1233 FEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLG 1293 (1326)
Q Consensus 1233 ~kS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~ 1293 (1326)
++++.+.||.+|+..+|.+. .+.....|...+.+|++..||..|++|||
T Consensus 40 l~d~~~~vr~~a~~aL~~i~------------~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 40 LKDEDPMVRRAAARALGRIG------------DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HTSSSHHHHHHHHHHHHCCH------------HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHhC------------CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 68999999999999999663 24456667775667788999999999986
No 42
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=97.03 E-value=1.7 Score=54.55 Aligned_cols=342 Identities=15% Similarity=0.193 Sum_probs=218.4
Q ss_pred hHH-HHHHHHHHHHHhhcchHHHHHHHhc---CC------CC-ChhhHHHHHHHHHHHHhhcCchhHHHHHHHHhhhhcc
Q 000730 929 PLR-AILTSFQAFCECVGDLEMRKILARD---GE------QN-DKEKWINLIGDVAGCVSIKRPKEVQTICLILTKSINR 997 (1326)
Q Consensus 929 P~~-~aleAlk~ll~~~g~~~~~~~L~~~---g~------W~-~~e~~~~gV~lLAr~m~~~~~~~~~~i~~~L~~~L~s 997 (1326)
|.| .+.++....+.+.|-.++...+++. |- .. +..-...|.+.+..++-...-++++.|++..+..|++
T Consensus 731 ~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~gfg~V~~~lg~r~kpylpqi~stiL~rLnn 810 (1172)
T KOG0213|consen 731 QYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVVNALGGRVKPYLPQICSTILWRLNN 810 (1172)
T ss_pred HHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHhhccccchHHHHHHHHHHhcC
Confidence 454 4667777777777777776666642 21 11 2223446777778887777778999999999999999
Q ss_pred ccccchHHHHHHHHHh---hhcCCchhhHHHHHHHHHHhhcCCCChhHHHHHhhhccCCc----chhhhhhHHHHHHHHH
Q 000730 998 QQRFQREAAAAALSEF---VRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIP----SIHIHQYATQVLSVIL 1070 (1326)
Q Consensus 998 ~~~~~Ri~a~aflsEL---l~~~~~~~~l~~~~i~~L~~~l~D~~~~VR~lsLrGLgnl~----~~~v~~~~~~lL~all 1070 (1326)
+....|.-|+-.++.+ ++.|.. +.++..+-.+|.+.+....|.|-...|.++-.|. ..|+..-.+.+||.+.
T Consensus 811 ksa~vRqqaadlis~la~Vlktc~e-e~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm~km~pPi~dllPrlt 889 (1172)
T KOG0213|consen 811 KSAKVRQQAADLISSLAKVLKTCGE-EKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLT 889 (1172)
T ss_pred CChhHHHHHHHHHHHHHHHHHhccH-HHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhccccccCCChhhhcccch
Confidence 9999998887666554 444533 4556677889999999999999988887776543 3366667788899999
Q ss_pred hhccCCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCcCCChHHHHHHHHHHHHhhhcCCCcchHHHHHHHH
Q 000730 1071 ALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIH 1150 (1326)
Q Consensus 1071 ~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~l~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~ 1150 (1326)
.-|....+.|+--.+.-++.|-..-.+.....--..||+-|--++-.-+-++|.+|..-||-+++.. |++
T Consensus 890 PILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~IakaI-GPq--------- 959 (1172)
T KOG0213|consen 890 PILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAKAI-GPQ--------- 959 (1172)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhc-CHH---------
Confidence 9999888999999999999999887665444556788888888888889999999999999999843 322
Q ss_pred hhhhHHHHhccCCChhHHHHHHHHH----HhhchhhhhhhhhhhccccCCCCCCCChHHHHHHHHHHHHHhCcchHHHHH
Q 000730 1151 AMLPRLILHIYDDDLSVRQACRNTL----KQVAPFMEIGVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYM 1226 (1326)
Q Consensus 1151 ~~LvpLLlHL~D~~~~V~~ack~tL----~~~a~lL~~~l~~lf~~~~~~~~~~l~~~~f~~~i~k~L~~~~~~~~~~~l 1226 (1326)
..|..|+=.|+=++-.-+.-.--|. .-|++|- .+.++.+..- ..+-....+ .++.+ .+|.+.-.+..-.|+
T Consensus 960 dVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFt--VLPalmneYr-tPe~nVQnG-VLkal-sf~FeyigemskdYi 1034 (1172)
T KOG0213|consen 960 DVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPFT--VLPALMNEYR-TPEANVQNG-VLKAL-SFMFEYIGEMSKDYI 1034 (1172)
T ss_pred HHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCchh--hhHHHHhhcc-CchhHHHHh-HHHHH-HHHHHHHHHHhhhHH
Confidence 3555666555444333222222222 2344442 2233332210 000000001 22222 223333344444455
Q ss_pred HHHHH----hhcCCChhHHHHHHHHHhhhhccCchhhhhhccHHHHHHHHHHHhc----cCCChhHHHHHHHHH
Q 000730 1227 GSTIQ----AFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLS----QSADAIVRATCSSSL 1292 (1326)
Q Consensus 1227 ~~~l~----y~kS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll----~Dpdp~VR~~Aa~aL 1292 (1326)
-...+ .+-+-...=|+.|+-.|-.+.-..+- .+.|+..-.|.. +. -|+.|.|...--+++
T Consensus 1035 yav~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~~g-----~g~eda~iHLLN-~iWpNIle~sPhviqa~~e~~ 1102 (1172)
T KOG0213|consen 1035 YAVTPLLEDALMDRDLVHRQTAMNVIKHLALGVPG-----TGCEDALIHLLN-LIWPNILETSPHVIQAFDEAM 1102 (1172)
T ss_pred HHhhHHHHHhhccccHHHHHHHHHHHHHHhcCCCC-----cCcHHHHHHHHH-HhhhhhcCCChHHHHHHHHHH
Confidence 44444 34455677799999888877544321 122444444444 23 278888887655544
No 43
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.96 E-value=0.005 Score=70.35 Aligned_cols=144 Identities=17% Similarity=0.171 Sum_probs=72.7
Q ss_pred CCChHHHHHHHHHHHHhhhcCCCcchHHHHHHHHhhhhHHHHhccCCChhHHHHHHHHHHhhchhhhhhhhhhhccccCC
Q 000730 1117 SMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEIGVYGIFNSHCFN 1196 (1326)
Q Consensus 1117 de~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL~~~l~~lf~~~~~~ 1196 (1326)
.+++++.+.|...+.+|++.... .+..+++- +.++-|.--+-|...+|...--.++...+ +.
T Consensus 345 ~dnEeiqchAvstLrnLAasse~-n~~~i~es--gAi~kl~eL~lD~pvsvqseisac~a~La---------------l~ 406 (550)
T KOG4224|consen 345 GDNEEIQCHAVSTLRNLAASSEH-NVSVIRES--GAIPKLIELLLDGPVSVQSEISACIAQLA---------------LN 406 (550)
T ss_pred CCchhhhhhHHHHHHHHhhhhhh-hhHHHhhc--CchHHHHHHHhcCChhHHHHHHHHHHHHH---------------hc
Confidence 56788999999999999974433 33344432 33333444455777777754333333322 11
Q ss_pred CCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHHhhcCCChhHHHHHHHHHhhhhccCch--hhhhhc--cHHHHHHHH
Q 000730 1197 SDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDD--QHILSL--FYTQVFGLL 1272 (1326)
Q Consensus 1197 ~~~~l~~~~f~~~i~k~L~~~~~~~~~~~l~~~l~y~kS~~~~IR~aA~~fiG~l~~~~~~--~~~~~~--~~e~l~~~L 1272 (1326)
+..+. .|+ + .+. +.-.++++.|....+|.+|+--+|-+-...+. .-+... ..+.+.+.|
T Consensus 407 d~~k~---~ll-d---------~gi----~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v~~YarviEawd~P~~gi~g~L 469 (550)
T KOG4224|consen 407 DNDKE---ALL-D---------SGI----IPILIPWTGSESEEVRGNAAAALINLSSDVEHYARVIEAWDHPVQGIQGRL 469 (550)
T ss_pred cccHH---HHh-h---------cCC----cceeecccCccchhhcccHHHHHHhhhhhhHHHHHHHHHhcCcchhHHHHH
Confidence 11100 000 0 011 11123456666667777766555544332221 111111 123455556
Q ss_pred HHHhccCCChhHHHHHHHHHHHHH
Q 000730 1273 VVKLSQSADAIVRATCSSSLGWLL 1296 (1326)
Q Consensus 1273 ~~~Ll~Dpdp~VR~~Aa~aL~~l~ 1296 (1326)
.+ .+...+..+|..|..|+-.|.
T Consensus 470 ~R-fl~S~~~tf~hia~wTI~qLl 492 (550)
T KOG4224|consen 470 AR-FLASHELTFRHIARWTIQQLL 492 (550)
T ss_pred HH-HHhhhHHHHHHHHHHHHHHHH
Confidence 66 566677777777777766655
No 44
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=96.96 E-value=0.035 Score=64.97 Aligned_cols=213 Identities=17% Similarity=0.119 Sum_probs=130.4
Q ss_pred HHHHHhhccCCChhHHHHHHHHHHHHhcc-CCcCCcchhHHhHHhhhcCcCcCCChHHHHHHHHHHHHhhh-cCCCcchH
Q 000730 1066 LSVILALLDDLDESVQLTAVSCLLTILKS-SSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSN-FGVGSQRE 1143 (1326)
Q Consensus 1066 L~all~~L~d~d~~V~leAm~~L~~lL~~-l~~~~~~~~l~~l~~~lrpffede~~~vR~aAi~LfG~L~~-~~~~~~~~ 1143 (1326)
|...++.+.++....+.+|+.++.+++.. .-.+.+..-...|+-.+...+.+.+.+=+..|..+.|-++= .|.|...+
T Consensus 45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ 124 (309)
T PF05004_consen 45 LKEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSE 124 (309)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHH
Confidence 55566666776777777777777777732 22233333344555555556666666677888888888863 45566666
Q ss_pred HHHHHHHhhhhHHHHhccCCChhHHHHHHHHHHhhchhhhhhhhhhhccccCCCCCCCChHHHHHHHHHHHHHhCcchHH
Q 000730 1144 AFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEIGVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRID 1223 (1326)
Q Consensus 1144 ~~~eQv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL~~~l~~lf~~~~~~~~~~l~~~~f~~~i~k~L~~~~~~~~~ 1223 (1326)
.+.+++...|.+.+. -....+.+|.+|-.||..|+-+-+-...++... -+-+..++....-+-.+.
T Consensus 125 ei~~~~~~~L~~~l~-d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~-----------~~~le~if~~~~~~~~~~-- 190 (309)
T PF05004_consen 125 EIFEELKPVLKRILT-DSSASPKARAACLEALAICTFVGGSDEEETEEL-----------MESLESIFLLSILKSDGN-- 190 (309)
T ss_pred HHHHHHHHHHHHHHh-CCccchHHHHHHHHHHHHHHHhhcCChhHHHHH-----------HHHHHHHHHHHhcCcCCC--
Confidence 777776666666443 123345677899999998875422211111100 011111111111000000
Q ss_pred HHHHHHHHhhc-CCChhHHHHHHHHHhhhhccCchhhhhhccHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHcc
Q 000730 1224 SYMGSTIQAFE-APWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLLKSIN 1300 (1326)
Q Consensus 1224 ~~l~~~l~y~k-S~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k~~~ 1300 (1326)
.+... .+.+.+..+|..--|+++-.++..... ...+..+..|.. |++.+|..||..|.+++.++++...
T Consensus 191 ------~~~~~~~~~~~l~~aAL~aW~lLlt~~~~~~~~-~~~~~~~~~l~~-lL~s~d~~VRiAAGEaiAll~E~~~ 260 (309)
T PF05004_consen 191 ------APVVAAEDDAALVAAALSAWALLLTTLPDSKLE-DLLEEALPALSE-LLDSDDVDVRIAAGEAIALLYELAR 260 (309)
T ss_pred ------cccccCCCccHHHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHHHHH-HhcCCCHHHHHHHHHHHHHHHHHhh
Confidence 00111 134679999988889999988875554 224667888999 8889999999999999999998776
No 45
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=96.93 E-value=0.018 Score=61.96 Aligned_cols=165 Identities=23% Similarity=0.228 Sum_probs=111.7
Q ss_pred chHHHHHHHHHhhhcCCchhhHHHHHHHHHHhhcCCCChhHHHHHhhhccCCcchhhhhhHHHHHHHHHhhccCCChhHH
Q 000730 1002 QREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSIHIHQYATQVLSVILALLDDLDESVQ 1081 (1326)
Q Consensus 1002 ~Ri~a~aflsELl~~~~~~~~l~~~~i~~L~~~l~D~~~~VR~lsLrGLgnl~~~~v~~~~~~lL~all~~L~d~d~~V~ 1081 (1326)
-|..++..++.|.... ..+++..+..+...++|++|.||+-|+..|..+.....-+...+++..++..+.|.|+.|+
T Consensus 4 vR~n~i~~l~DL~~r~---~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~D~~~~Ir 80 (178)
T PF12717_consen 4 VRNNAIIALGDLCIRY---PNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLLVDENPEIR 80 (178)
T ss_pred HHHHHHHHHHHHHHhC---cHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHcCCCHHHH
Confidence 4677777888776543 2456777889999999999999999999999988765555567777888899999999999
Q ss_pred HHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCcC-----CChHHHHHHHHHHHHhhhcCCCcchHHHHHHHHhhhhHH
Q 000730 1082 LTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVS-----MNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRL 1156 (1326)
Q Consensus 1082 leAm~~L~~lL~~l~~~~~~~~l~~l~~~lrpffed-----e~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~LvpL 1156 (1326)
.-|-..+..+....++..+...++.+..++-..-++ .+.+-|. ..+.-+..+... +.-++++..-+..-
T Consensus 81 ~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~~~~~~~~~~~~~~~~~---~I~~fll~~i~~---d~~~~~l~~kl~~~ 154 (178)
T PF12717_consen 81 SLARSFFSELLKKRNPNIIYNNFPELISSLNNCYEHPVYGPLSREKRK---KIYKFLLDFIDK---DKQKESLVEKLCQR 154 (178)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHHhCccccccccccCHHHHH---HHHHHHHHHcCc---HHHHHHHHHHHHHH
Confidence 999999999999877777888888877776554332 2222222 233333333221 22334444444444
Q ss_pred HHhcc-CCChhHHHHHHHHH
Q 000730 1157 ILHIY-DDDLSVRQACRNTL 1175 (1326)
Q Consensus 1157 LlHL~-D~~~~V~~ack~tL 1175 (1326)
+++-. +.++.|.+-+.+.|
T Consensus 155 ~~~~~~~~~~~~~~d~~~~l 174 (178)
T PF12717_consen 155 FLNAVVDEDERVLRDILYCL 174 (178)
T ss_pred HHHHcccccHHHHHHHHHHH
Confidence 44433 55555555554444
No 46
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=96.93 E-value=0.011 Score=75.79 Aligned_cols=248 Identities=16% Similarity=0.191 Sum_probs=166.2
Q ss_pred chHHHHHHHHHhhhcCCchhhHHHHHHHHHHhhcCCCChhHHHHHhhhccCCcch-hhhhhHHHHHHHHHhhccCCChhH
Q 000730 1002 QREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI-HIHQYATQVLSVILALLDDLDESV 1080 (1326)
Q Consensus 1002 ~Ri~a~aflsELl~~~~~~~~l~~~~i~~L~~~l~D~~~~VR~lsLrGLgnl~~~-~v~~~~~~lL~all~~L~d~d~~V 1080 (1326)
-|..|...|.....+... ..+-..+.....+--+|.+|.||..+.+-+|+++.. .-..-...+++-..+...|..+.|
T Consensus 214 sr~sacglf~~~~~~~~~-~~vk~elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~~~~~s~v~~~~~~L~~DdqdsV 292 (759)
T KOG0211|consen 214 SRLSACGLFGKLYVSLPD-DAVKRELRPIVQSLCQDDTPMVRRAVASNLGNIAKVLESEIVKSEVLPTLIQLLRDDQDSV 292 (759)
T ss_pred cchhhhhhhHHhccCCCh-HHHHHHHHHHHHhhccccchhhHHHHHhhhHHHHHHHHHHHHHhhccHHHhhhhhcchhhH
Confidence 488888888887665432 122233445555566999999999999999999865 223334566777777777777889
Q ss_pred HHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCcCCChHHHHHHHHHHHHhhhcCCCcchHHHHHHHHhhhhHHHHhc
Q 000730 1081 QLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHI 1160 (1326)
Q Consensus 1081 ~leAm~~L~~lL~~l~~~~~~~~l~~l~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~LvpLLlHL 1160 (1326)
+..|+.++..++..++..+ +.--.+...++.+.+|.+..+|......|-+|.+..+...-.+ ....|...-+
T Consensus 293 r~~a~~~~~~l~~l~~~~~--d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~~~~~~------~~~~~~~~l~ 364 (759)
T KOG0211|consen 293 REAAVESLVSLLDLLDDDD--DVVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGPSATRT------QLVPPVSNLL 364 (759)
T ss_pred HHHHHHHHHHHHHhcCCch--hhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhccccCcc------cchhhHHHHh
Confidence 9999999999999988773 4444556667789999999999999999999887322211111 3556777778
Q ss_pred cCCChhHHHHHHHHHHhhchhhhhhhhhhhccccCCCCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHHhhcCCChhH
Q 000730 1161 YDDDLSVRQACRNTLKQVAPFMEIGVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPII 1240 (1326)
Q Consensus 1161 ~D~~~~V~~ack~tL~~~a~lL~~~l~~lf~~~~~~~~~~l~~~~f~~~i~k~L~~~~~~~~~~~l~~~l~y~kS~~~~I 1240 (1326)
+|+..+|+.+...--...+.+++. +.+.+...++. +-....+.-++..++
T Consensus 365 ~~~~~e~r~a~a~~~~~l~~~l~~-------------------~~~~~i~~~~i-----------lp~~~~lv~d~~~~v 414 (759)
T KOG0211|consen 365 KDEEWEVRYAIAKKVQKLACYLNA-------------------SCYPNIPDSSI-----------LPEVQVLVLDNALHV 414 (759)
T ss_pred cchhhhhhHHhhcchHHHhhhcCc-------------------ccccccchhhh-----------hHHHHHHHhcccchH
Confidence 899888887654333333322221 11111111111 222334667788999
Q ss_pred HHHHHHHHhhhhccCchhhhhhccHHHHHHHHHHHhccCCChhHHHHHHHHHH
Q 000730 1241 QANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLG 1293 (1326)
Q Consensus 1241 R~aA~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~ 1293 (1326)
|.+.+.++..+.-..+.+. ..+.+...+.. +++|.+|.||-.-...+.
T Consensus 415 r~a~a~~~~~~~p~~~k~~----ti~~llp~~~~-~l~de~~~V~lnli~~ls 462 (759)
T KOG0211|consen 415 RSALASVITGLSPILPKER----TISELLPLLIG-NLKDEDPIVRLNLIDKLS 462 (759)
T ss_pred HHHHhccccccCccCCcCc----CccccChhhhh-hcchhhHHHHHhhHHHHH
Confidence 9999988887766555222 23555666777 799999999987765543
No 47
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=96.67 E-value=0.19 Score=64.29 Aligned_cols=295 Identities=15% Similarity=0.148 Sum_probs=166.7
Q ss_pred HHhhcCchhHHHHHHHHhhhhccccccchHHHHHHHHHhhhcCCchhhHHHHHHHHHHhhcCCCChhHHHHHhhhccCCc
Q 000730 975 CVSIKRPKEVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIP 1054 (1326)
Q Consensus 975 ~m~~~~~~~~~~i~~~L~~~L~s~~~~~Ri~a~aflsELl~~~~~~~~l~~~~i~~L~~~l~D~~~~VR~lsLrGLgnl~ 1054 (1326)
-.++.+|.+..-.++.+.+-++++++.-|..|+-|++-+ ....++++++..+.+.+.|+++.||+-|+=+++++-
T Consensus 81 ~yak~~P~~~lLavNti~kDl~d~N~~iR~~AlR~ls~l-----~~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly 155 (757)
T COG5096 81 RYAKLKPELALLAVNTIQKDLQDPNEEIRGFALRTLSLL-----RVKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLY 155 (757)
T ss_pred HHhccCHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHhc-----ChHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHH
Confidence 345667777777788888888888888888888777653 234667778888888888888888888888888775
Q ss_pred chhhhhhHHH-HHHHHHhhccCCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCc-CCChHHHHHHHHHHHH
Q 000730 1055 SIHIHQYATQ-VLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQV-SMNVKMRRNAFAAFGA 1132 (1326)
Q Consensus 1055 ~~~v~~~~~~-lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~l~~~lrpffe-de~~~vR~aAi~LfG~ 1132 (1326)
.-+.+.+... ....+-..+.|.|+.|+-.|+.+|..+=.. ....++..++.++-.+-- ......+..=...++.
T Consensus 156 ~ld~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e----~a~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~le~ 231 (757)
T COG5096 156 RLDKDLYHELGLIDILKELVADSDPIVIANALASLAEIDPE----LAHGYSLEVILRIPQLDLLSLSVSTEWLLLIILEV 231 (757)
T ss_pred hcCHhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchh----hhhhHHHHHHHHhhhccchhhhhhHHHHHHHHHHH
Confidence 3322233333 455555666677788888888888877654 334555555555544321 1111125555556666
Q ss_pred hhhcCCCcchHHHHHHHHhhhhHHHHhccCCChhHHHHHHHHHHhhchhhhh-hhhhhhcccc--CCCCCCCChHHHHHH
Q 000730 1133 LSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEI-GVYGIFNSHC--FNSDHRSDYETFVRD 1209 (1326)
Q Consensus 1133 L~~~~~~~~~~~~~eQv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL~~-~l~~lf~~~~--~~~~~~l~~~~f~~~ 1209 (1326)
|.........++ ....-.+..|++-.|+.|...+-....++.+++.. .......... +-+...---..++..
T Consensus 232 L~~~~~~~~~s~-----~~~~~~~~~~~~~~n~~vl~~av~~i~~l~~~~~~~~~~~~~~~~l~~Ll~~~~~~~~~vl~~ 306 (757)
T COG5096 232 LTERVPTTPDSA-----EDFEERLSPPLQHNNAEVLLIAVKVILRLLVFLPSNNLFLISSPPLVTLLAKPESLIQYVLRR 306 (757)
T ss_pred HHccCCCCCCcH-----HHHHHhccchhhhCcHHHHHHHHHHHHHHhhhhccccHHHhhccHHHHHHcCCHHHHHHHHHH
Confidence 665322211111 11222345677788999999999999999988766 3221111100 000000001234445
Q ss_pred HHHHHHHhCcchHHHHHHHHHHhhcCCChhHHHHHHHHHhhhhccCc---hhhhhhccHHHHHHHHHHHhccC--CChhH
Q 000730 1210 LTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCD---DQHILSLFYTQVFGLLVVKLSQS--ADAIV 1284 (1326)
Q Consensus 1210 i~k~L~~~~~~~~~~~l~~~l~y~kS~~~~IR~aA~~fiG~l~~~~~---~~~~~~~~~e~l~~~L~~~Ll~D--pdp~V 1284 (1326)
.-....+.++..++.-.....-.+++| +..+.-.+.+... .+.. .++...++. .-.+ .++.+
T Consensus 307 ~~~~~l~~~~k~~~~~~~~f~~~~~~~-------i~~~lek~~~~t~l~~~~n~-----~~~L~e~~~-y~~~~~~~~e~ 373 (757)
T COG5096 307 NIQIDLEVCSKLLDKVKKLFLIEYNDD-------IYIKLEKLDQLTRLADDQNL-----SQILLELIY-YIAENHIDAEM 373 (757)
T ss_pred hhHHHHHhhHHHHHHHhhhhhhhccch-------HHHHHHHHHHHhhcCCchhh-----HHHHHHHHH-HHhhccccHHH
Confidence 555555555555554444433333333 3333333322211 1221 123333444 2445 78888
Q ss_pred HHHHHHHHHHHH
Q 000730 1285 RATCSSSLGWLL 1296 (1326)
Q Consensus 1285 R~~Aa~aL~~l~ 1296 (1326)
-..|-++||.+.
T Consensus 374 v~~~ik~lgd~~ 385 (757)
T COG5096 374 VSEAIKALGDLA 385 (757)
T ss_pred HHHHHHHHHhhh
Confidence 888888888776
No 48
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=96.58 E-value=0.0037 Score=53.51 Aligned_cols=52 Identities=27% Similarity=0.393 Sum_probs=46.9
Q ss_pred hhHHHHHhhhccCCcch---hhhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHH
Q 000730 1040 PTVRGLCLRGLVQIPSI---HIHQYATQVLSVILALLDDLDESVQLTAVSCLLTI 1091 (1326)
Q Consensus 1040 ~~VR~lsLrGLgnl~~~---~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~l 1091 (1326)
|.||.-|+.+||+++.. ....|.+.+++.+...|.|.++.|+..|..+|++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 57999999999998753 67889999999999999999999999999999875
No 49
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=96.53 E-value=0.16 Score=59.26 Aligned_cols=132 Identities=24% Similarity=0.254 Sum_probs=87.9
Q ss_pred HHHHHHHHHH-hhcCCCChhHHHHHhhhccCCcchhhhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhccCCcCCcc
Q 000730 1023 LLEQMVEALC-RHVSDESPTVRGLCLRGLVQIPSIHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVE 1101 (1326)
Q Consensus 1023 l~~~~i~~L~-~~l~D~~~~VR~lsLrGLgnl~~~~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~ 1101 (1326)
.++.+++.|. -+++.+++.||..+++.||-...-.. +....-++-++..+...++.|...|++++-+++-.=+...+.
T Consensus 23 ~l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~-~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~ 101 (298)
T PF12719_consen 23 SLESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDK-ELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFD 101 (298)
T ss_pred hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCh-HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhcc
Confidence 3445554444 68899999999999998885542210 123333455555554457889999999999997654433322
Q ss_pred hh--------HHhHHhhhcCcCcCCChHHHHHHHHHHHHhhhcCCCcchHHHHHHHHhhhhHHHHh
Q 000730 1102 PI--------LLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILH 1159 (1326)
Q Consensus 1102 ~~--------l~~l~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~LvpLLlH 1159 (1326)
.. ...+..-+..+++++++++|+.|.+-|.+|.-.+.-.. ...++..|+-+.++
T Consensus 102 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~----~~~vL~~Lll~yF~ 163 (298)
T PF12719_consen 102 SESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD----PPKVLSRLLLLYFN 163 (298)
T ss_pred chhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc----HHHHHHHHHHHHcC
Confidence 22 23566667788999999999999999999987544333 34455555555443
No 50
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=96.51 E-value=0.059 Score=58.02 Aligned_cols=113 Identities=21% Similarity=0.178 Sum_probs=85.1
Q ss_pred ChhHHHHHhhhccCCcchhhhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhccCCcCCcch-hHHhHHhhhcCcCcC
Q 000730 1039 SPTVRGLCLRGLVQIPSIHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEP-ILLNLSVRLRNLQVS 1117 (1326)
Q Consensus 1039 ~~~VR~lsLrGLgnl~~~~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~-~l~~l~~~lrpffed 1117 (1326)
+|.||.-++.++|.+.... .......++.+...|.|.++.|+..|+..|++++.. +--.+.. ++..++. ...|
T Consensus 1 ~~~vR~n~i~~l~DL~~r~-~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~-d~ik~k~~l~~~~l~----~l~D 74 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRY-PNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILE-DMIKVKGQLFSRILK----LLVD 74 (178)
T ss_pred CHHHHHHHHHHHHHHHHhC-cHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc-CceeehhhhhHHHHH----HHcC
Confidence 6899999999999887541 123455578889999999999999999999999865 2222332 2244443 4599
Q ss_pred CChHHHHHHHHHHHHhhhcCCCcchHHHHHHHHhhhhHHHHhccCCC
Q 000730 1118 MNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDD 1164 (1326)
Q Consensus 1118 e~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~LvpLLlHL~D~~ 1164 (1326)
++++||..|-..|..+.... .. +-+.+.++.++.||.+..
T Consensus 75 ~~~~Ir~~A~~~~~e~~~~~---~~----~~i~~~~~e~i~~l~~~~ 114 (178)
T PF12717_consen 75 ENPEIRSLARSFFSELLKKR---NP----NIIYNNFPELISSLNNCY 114 (178)
T ss_pred CCHHHHHHHHHHHHHHHHhc---cc----hHHHHHHHHHHHHHhCcc
Confidence 99999999999999999721 12 234788999999999863
No 51
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.31 E-value=0.24 Score=62.46 Aligned_cols=297 Identities=15% Similarity=0.167 Sum_probs=182.0
Q ss_pred cCchhHHHHHHHHhhhhccccccchHHHHHHHHHhhhcCCchhhHHHHHHHHHHhhcCCCChhHHHHHhhhccCCcchhh
Q 000730 979 KRPKEVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSIHI 1058 (1326)
Q Consensus 979 ~~~~~~~~i~~~L~~~L~s~~~~~Ri~a~aflsELl~~~~~~~~l~~~~i~~L~~~l~D~~~~VR~lsLrGLgnl~~~~v 1058 (1326)
+.+-|+..|= -+++..|+.=..+-++-...+=||... +.++-=+.|.|.+-++.+|..|-.+||-.||+|+..++
T Consensus 65 GypahFGqie--clKLias~~f~dKRiGYLaamLlLdE~---qdvllLltNslknDL~s~nq~vVglAL~alg~i~s~Em 139 (866)
T KOG1062|consen 65 GYPAHFGQIE--CLKLIASDNFLDKRIGYLAAMLLLDER---QDLLLLLTNSLKNDLNSSNQYVVGLALCALGNICSPEM 139 (866)
T ss_pred CCCccchhhH--HHHHhcCCCchHHHHHHHHHHHHhccc---hHHHHHHHHHHHhhccCCCeeehHHHHHHhhccCCHHH
Confidence 4454554442 245666665554433333333344333 22222357899999999999999999999999997654
Q ss_pred hhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCcCCChHHHHHHHHHHHHhhhcCC
Q 000730 1059 HQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGV 1138 (1326)
Q Consensus 1059 ~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~l~~~lrpffede~~~vR~aAi~LfG~L~~~~~ 1138 (1326)
.+.+.|-+-..+...++-|+-.|+.++-++.....+ -++ .+...-|.+.-+-+..|=.++..+.-++++.+.
T Consensus 140 ---ardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~-l~e----~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~ 211 (866)
T KOG1062|consen 140 ---ARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPD-LVE----HFVIAFRKLLCEKHHGVLIAGLHLITELCKISP 211 (866)
T ss_pred ---hHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCch-HHH----HhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCH
Confidence 234455555666667889999999999999987542 122 223344566667778888899999988887432
Q ss_pred CcchHHHHHHHHhhhhHHHHhccCC----ChhHHHHHHHHHHhhchhhhhhhhhhhccccCCCCCCCChHHHHHHHHHHH
Q 000730 1139 GSQREAFLEQIHAMLPRLILHIYDD----DLSVRQACRNTLKQVAPFMEIGVYGIFNSHCFNSDHRSDYETFVRDLTRQF 1214 (1326)
Q Consensus 1139 ~~~~~~~~eQv~~~LvpLLlHL~D~----~~~V~~ack~tL~~~a~lL~~~l~~lf~~~~~~~~~~l~~~~f~~~i~k~L 1214 (1326)
..-..|++ +...+|..|-.+.-. +-+|. +.++|||+.++-.++.- ++.+ ..++.+.++|+....
T Consensus 212 -~~l~~fr~-l~~~lV~iLk~l~~~~yspeydv~-------gi~dPFLQi~iLrlLri--LGq~-d~daSd~M~DiLaqv 279 (866)
T KOG1062|consen 212 -DALSYFRD-LVPSLVKILKQLTNSGYSPEYDVH-------GISDPFLQIRILRLLRI--LGQN-DADASDLMNDILAQV 279 (866)
T ss_pred -HHHHHHHH-HHHHHHHHHHHHhcCCCCCccCcc-------CCCchHHHHHHHHHHHH--hcCC-CccHHHHHHHHHHHH
Confidence 23344555 344444444433322 22344 36789999854444332 2332 234566777776666
Q ss_pred HHh---CcchHHHHHHHHHH--hhcCCChhHHHHHHHHHhhhhccCchhhhhhc-----------cHHHHH---HHHHHH
Q 000730 1215 VQH---FPSRIDSYMGSTIQ--AFEAPWPIIQANAIYFSSSILCLCDDQHILSL-----------FYTQVF---GLLVVK 1275 (1326)
Q Consensus 1215 ~~~---~~~~~~~~l~~~l~--y~kS~~~~IR~aA~~fiG~l~~~~~~~~~~~~-----------~~e~l~---~~L~~~ 1275 (1326)
..+ ..+.-+-.+-+|+. |-=.|.+.+|-.|+-.+|-++.+-+...+ ++ |...+. .+..+
T Consensus 280 atntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~Nir-YvaLn~L~r~V~~d~~avqrHr~tIle- 357 (866)
T KOG1062|consen 280 ATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIR-YVALNMLLRVVQQDPTAVQRHRSTILE- 357 (866)
T ss_pred HhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCcccee-eeehhhHHhhhcCCcHHHHHHHHHHHH-
Confidence 532 23333444445544 33335667999999999966665442221 11 111121 23556
Q ss_pred hccCCChhHHHHHHHHHHHHHHHcccc
Q 000730 1276 LSQSADAIVRATCSSSLGWLLKSINSH 1302 (1326)
Q Consensus 1276 Ll~Dpdp~VR~~Aa~aL~~l~k~~~~~ 1302 (1326)
-++|||+++|++|-+=++.+.+.+|..
T Consensus 358 CL~DpD~SIkrralELs~~lvn~~Nv~ 384 (866)
T KOG1062|consen 358 CLKDPDVSIKRRALELSYALVNESNVR 384 (866)
T ss_pred HhcCCcHHHHHHHHHHHHHHhccccHH
Confidence 689999999999999998888887764
No 52
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.31 E-value=0.23 Score=61.75 Aligned_cols=165 Identities=19% Similarity=0.176 Sum_probs=113.4
Q ss_pred hHHHHHHHHhhhhccccccchHHHH-HHHHHhhhcCCchhhHHHHHHHHHHhhcCCCChhHHHHHhhhccCCcch--hh-
Q 000730 983 EVQTICLILTKSINRQQRFQREAAA-AALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI--HI- 1058 (1326)
Q Consensus 983 ~~~~i~~~L~~~L~s~~~~~Ri~a~-aflsELl~~~~~~~~l~~~~i~~L~~~l~D~~~~VR~lsLrGLgnl~~~--~v- 1058 (1326)
++-.++++.++.-+++.-..|+... |-|.+-+........++..++.++.++..-++..||.-+++=|.-+... .+
T Consensus 41 eflr~vn~il~vkKresi~dRIl~fla~fv~sl~q~d~e~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eid 120 (892)
T KOG2025|consen 41 EFLRVVNYILLVKKRESIPDRILSFLARFVESLPQLDKEEDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEID 120 (892)
T ss_pred HHHHHHHHheeeccCCCcHHHHHHHHHHHHHhhhccCchhhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccC
Confidence 5666777777777777777777653 2333333333344568889999999999999999999998866644321 11
Q ss_pred hhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhccCCcC--CcchhHHhHHhhhcCcCcCCChHHHHHHHHHHHHhhhc
Q 000730 1059 HQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKD--AVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNF 1136 (1326)
Q Consensus 1059 ~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~--~~~~~l~~l~~~lrpffede~~~vR~aAi~LfG~L~~~ 1136 (1326)
.-....+..+++.-+.|..+.|+.+|+.+|+++=+.-.+. .+...+..+ ...|.+++||.+|..-...=
T Consensus 121 d~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~dee~~v~n~l~~l------iqnDpS~EVRRaaLsnI~vd--- 191 (892)
T KOG2025|consen 121 DDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDEECPVVNLLKDL------IQNDPSDEVRRAALSNISVD--- 191 (892)
T ss_pred HHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCCcccHHHHHHHH------HhcCCcHHHHHHHHHhhccC---
Confidence 1234678899999999999999999999999987432222 345555554 34899999999987543221
Q ss_pred CCCcchHHHHHHHHhhhhHHHHhccCCChhHHH
Q 000730 1137 GVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQ 1169 (1326)
Q Consensus 1137 ~~~~~~~~~~eQv~~~LvpLLlHL~D~~~~V~~ 1169 (1326)
. +.++..+-.-.|.+..+|+
T Consensus 192 ---n----------sTlp~IveRarDV~~anRr 211 (892)
T KOG2025|consen 192 ---N----------STLPCIVERARDVSGANRR 211 (892)
T ss_pred ---c----------ccchhHHHHhhhhhHHHHH
Confidence 1 2556666667777766654
No 53
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=96.27 E-value=0.012 Score=56.87 Aligned_cols=86 Identities=20% Similarity=0.193 Sum_probs=64.9
Q ss_pred HHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCcCCChHHHHHHHHHHHHhhhcCCCcchHHHHHHHHhhhhHHHHhcc
Q 000730 1082 LTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIY 1161 (1326)
Q Consensus 1082 leAm~~L~~lL~~l~~~~~~~~l~~l~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~LvpLLlHL~ 1161 (1326)
..+|-+|+.+--.++.. +..++-.|..-+-.+|+|++..||.+|.+.+.++++..++. .-...++|+..|..++ .
T Consensus 4 ~ggli~Laa~ai~l~~~-~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~-~l~~f~~IF~~L~kl~---~ 78 (97)
T PF12755_consen 4 KGGLIGLAAVAIALGKD-ISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGE-ILPYFNEIFDALCKLS---A 78 (97)
T ss_pred hHHHHHHHHHHHHchHh-HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH---c
Confidence 45666677766655544 67777777777889999999999999999999999965432 2334566766666654 6
Q ss_pred CCChhHHHHHH
Q 000730 1162 DDDLSVRQACR 1172 (1326)
Q Consensus 1162 D~~~~V~~ack 1172 (1326)
|++++|+.+|.
T Consensus 79 D~d~~Vr~~a~ 89 (97)
T PF12755_consen 79 DPDENVRSAAE 89 (97)
T ss_pred CCchhHHHHHH
Confidence 99999999884
No 54
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.21 E-value=0.57 Score=58.56 Aligned_cols=168 Identities=14% Similarity=0.233 Sum_probs=109.3
Q ss_pred ChhhHHHHHHHHHHHHhhcCchhHHHHHHHHhhhhccccccchHHHHH-HHHHhhhcCCchhhHHHHHHHHHHhhcCCCC
Q 000730 961 DKEKWINLIGDVAGCVSIKRPKEVQTICLILTKSINRQQRFQREAAAA-ALSEFVRYSGGFDSLLEQMVEALCRHVSDES 1039 (1326)
Q Consensus 961 ~~e~~~~gV~lLAr~m~~~~~~~~~~i~~~L~~~L~s~~~~~Ri~a~a-flsELl~~~~~~~~l~~~~i~~L~~~l~D~~ 1039 (1326)
+..-|.-||. |..--+...|...+.+..-+..+|++.-.--|.-|+. .|-=|+++|.. ++..+..|.+.+.||+
T Consensus 120 S~n~ye~giA-L~GLS~fvTpdLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeA----lr~~FprL~EkLeDpD 194 (877)
T KOG1059|consen 120 SSNVYEVGLA-LSGLSCIVTPDLARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEA----LRPCFPRLVEKLEDPD 194 (877)
T ss_pred cCccchhhhe-ecccccccCchhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHh----HhhhHHHHHHhccCCC
Confidence 5556666665 2222233356677788888888888877777766664 44457777743 4566778999999999
Q ss_pred hhHHHHHhhhccCCcch--------------------------hh-----------hhhHHHHHHHHHhhccCCC-hhHH
Q 000730 1040 PTVRGLCLRGLVQIPSI--------------------------HI-----------HQYATQVLSVILALLDDLD-ESVQ 1081 (1326)
Q Consensus 1040 ~~VR~lsLrGLgnl~~~--------------------------~v-----------~~~~~~lL~all~~L~d~d-~~V~ 1081 (1326)
|.|...|+--+-.+|.. |+ .++.+-+++.+.+.+..+. -.+.
T Consensus 195 p~V~SAAV~VICELArKnPknyL~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKKLieplt~li~sT~AmSLl 274 (877)
T KOG1059|consen 195 PSVVSAAVSVICELARKNPQNYLQLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKKLIEPITELMESTVAMSLL 274 (877)
T ss_pred chHHHHHHHHHHHHHhhCCcccccccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhhhhhhHHHHHHHhhHHHHHH
Confidence 99998887644433211 11 2344556777777765543 2466
Q ss_pred HHHHHHHHHH--hccCCcCCcchhHHhHHhhhcCcCcCCChHHHHHHHHHHHHhhh
Q 000730 1082 LTAVSCLLTI--LKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSN 1135 (1326)
Q Consensus 1082 leAm~~L~~l--L~~l~~~~~~~~l~~l~~~lrpffede~~~vR~aAi~LfG~L~~ 1135 (1326)
.|.+++.-.. +..++ ++..++.+- +.+||-|++|.+..+|.-+.-+||.+++
T Consensus 275 YECvNTVVa~s~s~g~~-d~~asiqLC-vqKLr~fiedsDqNLKYlgLlam~KI~k 328 (877)
T KOG1059|consen 275 YECVNTVVAVSMSSGMS-DHSASIQLC-VQKLRIFIEDSDQNLKYLGLLAMSKILK 328 (877)
T ss_pred HHHHHHheeehhccCCC-CcHHHHHHH-HHHHhhhhhcCCccHHHHHHHHHHHHhh
Confidence 6776666544 11111 223333322 3679999999999999999999999998
No 55
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=96.18 E-value=0.16 Score=64.75 Aligned_cols=207 Identities=19% Similarity=0.178 Sum_probs=119.6
Q ss_pred HHHHHHhhcchHHHHHHHhcCCCC--ChhhHHHHHHHHHHHHhh-cCchhHHHHHHHHhhhhcccccc----chHHHHHH
Q 000730 937 FQAFCECVGDLEMRKILARDGEQN--DKEKWINLIGDVAGCVSI-KRPKEVQTICLILTKSINRQQRF----QREAAAAA 1009 (1326)
Q Consensus 937 lk~ll~~~g~~~~~~~L~~~g~W~--~~e~~~~gV~lLAr~m~~-~~~~~~~~i~~~L~~~L~s~~~~----~Ri~a~af 1009 (1326)
|.-.+..+|-...+..|.. |- ..-+-.+...+++..+.. .+| -+.++..+.++++++... -|.+|+..
T Consensus 346 ~~Dal~~~GT~~a~~~i~~---~i~~~~~~~~ea~~~~~~~~~~~~~P--t~~~l~~l~~l~~~~~~~~~~~l~~sa~l~ 420 (574)
T smart00638 346 FLDAVAQAGTPPALKFIKQ---WIKNKKITPLEAAQLLAVLPHTARYP--TEEILKALFELAESPEVQKQPYLRESALLA 420 (574)
T ss_pred HHHHHHhcCCHHHHHHHHH---HHHcCCCCHHHHHHHHHHHHHhhhcC--CHHHHHHHHHHhcCccccccHHHHHHHHHH
Confidence 3333456677666666553 21 111222344444443322 122 456666777777664333 36788888
Q ss_pred HHHhhhc-CCch--------hhHHHHHHHHHHhhcCCCChhHHHHHhhhccCCcchhhhhhHHHHHHHHHhhcc---CCC
Q 000730 1010 LSEFVRY-SGGF--------DSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSIHIHQYATQVLSVILALLD---DLD 1077 (1326)
Q Consensus 1010 lsELl~~-~~~~--------~~l~~~~i~~L~~~l~D~~~~VR~lsLrGLgnl~~~~v~~~~~~lL~all~~L~---d~d 1077 (1326)
|+.+++. |... ..+.+.+...|.+..++.+...+.+.||||||++... .+..+..-+. +..
T Consensus 421 ~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~~~-------~i~~l~~~l~~~~~~~ 493 (574)
T smart00638 421 YGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGHPS-------SIKVLEPYLEGAEPLS 493 (574)
T ss_pred HHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCChh-------HHHHHHHhcCCCCCCC
Confidence 8888883 3221 3455666677777777778888999999999999743 2333333333 223
Q ss_pred hhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCc-CCChHHHHHHHHHHHHhhhcCCCcchHHHHHHHHhhhhHH
Q 000730 1078 ESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQV-SMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRL 1156 (1326)
Q Consensus 1078 ~~V~leAm~~L~~lL~~l~~~~~~~~l~~l~~~lrpffe-de~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~LvpL 1156 (1326)
..++..|+.+|+++...- ...+...++.| |++ .|..+||.+|+.++=.-- -...+.++ +.-.
T Consensus 494 ~~iR~~Av~Alr~~a~~~-p~~v~~~l~~i------~~n~~e~~EvRiaA~~~lm~t~------P~~~~l~~----ia~~ 556 (574)
T smart00638 494 TFIRLAAILALRNLAKRD-PRKVQEVLLPI------YLNRAEPPEVRMAAVLVLMETK------PSVALLQR----IAEL 556 (574)
T ss_pred HHHHHHHHHHHHHHHHhC-chHHHHHHHHH------HcCCCCChHHHHHHHHHHHhcC------CCHHHHHH----HHHH
Confidence 468899999999876543 34455666555 333 577889999887764421 12222233 2322
Q ss_pred HHhccCCChhHHHHHHHH
Q 000730 1157 ILHIYDDDLSVRQACRNT 1174 (1326)
Q Consensus 1157 LlHL~D~~~~V~~ack~t 1174 (1326)
+-+ |++.+|+.....+
T Consensus 557 l~~--E~~~QV~sfv~S~ 572 (574)
T smart00638 557 LNK--EPNLQVASFVYSH 572 (574)
T ss_pred Hhh--cCcHHHHHHhHHh
Confidence 222 7777887655443
No 56
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=96.13 E-value=5.2 Score=49.12 Aligned_cols=509 Identities=13% Similarity=0.127 Sum_probs=258.8
Q ss_pred HHHHHHHhccCCChhhHHHHHHHHHHHH--hhhcccccccchhhHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccCchh
Q 000730 720 TLHSCTTAICDRTKQSAEGAIQAVVEFV--TKRGNELSETDVSRTTQSLLSAAVHITDKHLRLETLGAISCLAENTNSKI 797 (1326)
Q Consensus 720 ll~~ll~~L~d~~~~~~~~A~~~L~~~l--~~rg~~L~e~~V~~I~~~I~~~l~~i~~~~~r~~~l~ai~~La~~h~~~v 797 (1326)
+.+.+.++++.. +-+++.|-.+|+-++ -..|.-+.|+++-++.=+|.+ +-.-.++..|+.+--||--|..-. +.|
T Consensus 23 ~~qd~~~sfn~S-pvs~r~~r~lls~l~yll~tge~f~e~~at~lff~i~K-lFQhkd~~Lrq~VY~aIkelS~~t-edv 99 (898)
T COG5240 23 LLQDMNESFNKS-PVSTRSARKLLSNLFYLLSTGELFPEATATNLFFAILK-LFQHKDLYLRQCVYSAIKELSKLT-EDV 99 (898)
T ss_pred HHHHHHHHhccC-CCChHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHH-HHhcCChHHHHHHHHHHHHHhhcc-hhh
Confidence 344445555433 233444444555443 223444446656666666655 333455667777777776665543 222
Q ss_pred HHHHHHhhhcccchhhhhccccCCCCchhHHHHhhcCcccHHHHHHHHHHHHccCCCccCCC-ccCCCCCCCCCCCccch
Q 000730 798 VFNEVLATAGKDIVTKDISRLRGGWPMQDAFHAFSQHAVLSFLFLEHLISALNQTPFVKGDM-EKGDYSSHSADTWIDDD 876 (1326)
Q Consensus 798 V~~~Ll~~~~~~~~~~~~~~L~~~lP~d~~W~aLa~d~~l~~~vL~~LL~~L~~~p~~~e~~-~~~~~~~~~~~~~~~~~ 876 (1326)
+.. --...||+.- ..| ...-+..+..|..++.....|.-.. -+.++-+.. .-
T Consensus 100 lm~-------tssiMkD~~~---g~~-----------~~~kp~AiRsL~~Vid~~tv~~~er~l~~a~Vs~~------~a 152 (898)
T COG5240 100 LMG-------TSSIMKDLNG---GVP-----------DDVKPMAIRSLFSVIDGETVYDFERYLNQAFVSTS------MA 152 (898)
T ss_pred hHH-------HHHHHHhhcc---CCc-----------cccccHHHHHHHHhcCcchhhhHHHHhhhhccccc------hh
Confidence 210 0112233321 222 1122233334444444443332100 000111110 01
Q ss_pred HHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHH--HHHhhhcccCCC-CCCCChHHHHHHHHHHHHHhhcc---hHHH
Q 000730 877 ILQAAILALTAFFRGGGKVGKKAVEKSYAPVLAAL--TLQLGSCHGLAS-SGQHEPLRAILTSFQAFCECVGD---LEMR 950 (1326)
Q Consensus 877 ~~laA~~aL~Ell~~~~~~~~~av~~~fp~Lf~aL--L~ql~~~~~~~~-~~~~~P~~~aleAlk~ll~~~g~---~~~~ 950 (1326)
+.-||.+.-|.++... ...++++--+.=-|. +.|.-.-+|-.. ..+-+|.+ -..|+ +||-+..- ..+.
T Consensus 153 ~~saalv~aYhLlp~~----~~~~~rw~ne~qeav~~l~q~p~~~~n~gy~Pn~~~is-qYHal-GlLyq~kr~dkma~l 226 (898)
T COG5240 153 RRSAALVVAYHLLPNN----FNQTKRWLNETQEAVLDLKQFPNQHGNEGYEPNGNPIS-QYHAL-GLLYQSKRTDKMAQL 226 (898)
T ss_pred hhhhHHHHhhhhcccc----HHHHHHHHHHHHHHHhhHhhCcCccCCcccCCCCChHH-HHHHH-HHHHHHhcccHHHHH
Confidence 2348889999999875 233333332221121 223222222110 01234542 22233 33333333 2222
Q ss_pred HHHHhcCC---CCChhhHHHHHHHHHHHHhhcCchhHHHHHHHHhhhhccccccchHHHHHHHHHhhhcCCchhhHHHHH
Q 000730 951 KILARDGE---QNDKEKWINLIGDVAGCVSIKRPKEVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQM 1027 (1326)
Q Consensus 951 ~~L~~~g~---W~~~e~~~~gV~lLAr~m~~~~~~~~~~i~~~L~~~L~s~~~~~Ri~a~aflsELl~~~~~~~~l~~~~ 1027 (1326)
+.++.-.+ ..+......+|......| ..+++..-.+..+|...|++..+...+-++-..+.|--.. ....+.++.
T Consensus 227 klv~hf~~n~smknq~a~V~lvr~~~~ll-~~n~q~~~q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~n-v~~~~~~~~ 304 (898)
T COG5240 227 KLVEHFRGNASMKNQLAGVLLVRATVELL-KENSQALLQLRPFLNSWLSDKFEMVFLEAARAVCALSEEN-VGSQFVDQT 304 (898)
T ss_pred HHHHHhhcccccccchhheehHHHHHHHH-HhChHHHHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHhc-cCHHHHHHH
Confidence 33332111 224455556665444443 3344444455555555566666666555443333332222 334566888
Q ss_pred HHHHHhhcCCCChhHHHHHhhhccCCcc---hhhhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhccCCcCCcchhH
Q 000730 1028 VEALCRHVSDESPTVRGLCLRGLVQIPS---IHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPIL 1104 (1326)
Q Consensus 1028 i~~L~~~l~D~~~~VR~lsLrGLgnl~~---~~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l 1104 (1326)
+..|..-++.++...|-.|+|-|..++. +++.---+. ++ +...|.+..|..=|+.+|-+-.. ++.+.
T Consensus 305 vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vcN~e-vE---sLIsd~Nr~IstyAITtLLKTGt---~e~id--- 374 (898)
T COG5240 305 VSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVCNKE-VE---SLISDENRTISTYAITTLLKTGT---EETID--- 374 (898)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeecChh-HH---HHhhcccccchHHHHHHHHHcCc---hhhHH---
Confidence 9999999999999999999999998874 233111011 12 22345566787777777766443 34443
Q ss_pred HhHHhhhcCcCcCCChHHHHHHHHHHHHhhhcCCCcchHHHHHHHHhhhhHHHHhccCCChhHHHHHHHHHHhhchhh-h
Q 000730 1105 LNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFM-E 1183 (1326)
Q Consensus 1105 ~~l~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL-~ 1183 (1326)
++...|..|.-|.++....-+|.....|+-.-..++ . -++..|...|+. ...-.-.++.-.|+-..-.+- .
T Consensus 375 -rLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~-~----s~l~FL~~~L~~--eGg~eFK~~~Vdaisd~~~~~p~ 446 (898)
T COG5240 375 -RLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKK-L----SYLDFLGSSLLQ--EGGLEFKKYMVDAISDAMENDPD 446 (898)
T ss_pred -HHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHH-H----HHHHHHHHHHHh--cccchHHHHHHHHHHHHHhhCch
Confidence 455566788999999999888888888875222211 1 122333333332 233344444444444333322 1
Q ss_pred h--hhhhhhccccCCCCCCCChHHHHHHHHHHHHHhC-----cchHHHHHHHHHHhhcCCChhHHHHHHHHHhhhhccCc
Q 000730 1184 I--GVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHF-----PSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCD 1256 (1326)
Q Consensus 1184 ~--~l~~lf~~~~~~~~~~l~~~~f~~~i~k~L~~~~-----~~~~~~~l~~~l~y~kS~~~~IR~aA~~fiG~l~~~~~ 1256 (1326)
. ..-+.++.. .+| -.|.+..-+|...|.++- |+++-.++-.-+.. ....||.+|+.-+.-+.-+..
T Consensus 447 skEraLe~LC~f-IED---cey~~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~iL---EN~ivRsaAv~aLskf~ln~~ 519 (898)
T COG5240 447 SKERALEVLCTF-IED---CEYHQITVRILGILGREGPRAKTPGKYVRHIYNRLIL---ENNIVRSAAVQALSKFALNIS 519 (898)
T ss_pred HHHHHHHHHHHH-Hhh---cchhHHHHHHHHHhcccCCCCCCcchHHHHHHHHHHH---hhhHHHHHHHHHHHHhccCcc
Confidence 1 112333332 222 235566667777776553 45554444443332 356799999987765554443
Q ss_pred hhhhhhccHHHHHHHHHHHhccCCChhHHHHHHHHHHHHH
Q 000730 1257 DQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLL 1296 (1326)
Q Consensus 1257 ~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~ 1296 (1326)
+- ...+.+..+|.+ -+.|.|-.||.+|+-+|..+.
T Consensus 520 d~----~~~~sv~~~lkR-clnD~DdeVRdrAsf~l~~~~ 554 (898)
T COG5240 520 DV----VSPQSVENALKR-CLNDQDDEVRDRASFLLRNMR 554 (898)
T ss_pred cc----ccHHHHHHHHHH-HhhcccHHHHHHHHHHHHhhh
Confidence 22 234678888988 899999999999999998876
No 57
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=96.01 E-value=0.0089 Score=57.71 Aligned_cols=90 Identities=24% Similarity=0.327 Sum_probs=73.4
Q ss_pred HHHHHhhhccCCcch---hhhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCcCC
Q 000730 1042 VRGLCLRGLVQIPSI---HIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSM 1118 (1326)
Q Consensus 1042 VR~lsLrGLgnl~~~---~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~l~~~lrpffede 1118 (1326)
.|+-++-||+.++.+ .+.+|.+.+++.++.++.|.|.+|++-|..+|-+|....... +-+.+..|-..+...+.|.
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~-~l~~f~~IF~~L~kl~~D~ 80 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGE-ILPYFNEIFDALCKLSADP 80 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcCC
Confidence 366777788877543 689999999999999999999999999999999998776544 3347778888888899999
Q ss_pred ChHHHHHHHHHHHHh
Q 000730 1119 NVKMRRNAFAAFGAL 1133 (1326)
Q Consensus 1119 ~~~vR~aAi~LfG~L 1133 (1326)
++.||.+| .++-.|
T Consensus 81 d~~Vr~~a-~~Ld~l 94 (97)
T PF12755_consen 81 DENVRSAA-ELLDRL 94 (97)
T ss_pred chhHHHHH-HHHHHH
Confidence 99999998 444443
No 58
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=95.98 E-value=0.0083 Score=58.85 Aligned_cols=106 Identities=24% Similarity=0.234 Sum_probs=77.7
Q ss_pred HHHHHHhhcCCCChhHHHHHhhhccCCcch---hhhhhH-HHHHHHHHhhccCCChhHHHHHHHHHHHHhccCCcCCcch
Q 000730 1027 MVEALCRHVSDESPTVRGLCLRGLVQIPSI---HIHQYA-TQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEP 1102 (1326)
Q Consensus 1027 ~i~~L~~~l~D~~~~VR~lsLrGLgnl~~~---~v~~~~-~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~ 1102 (1326)
++..|.+-+.|+++.+|.-++..|++++.+ ...... ..+++.++..|.+.+..++..|+.+|+++...-.. ...
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~--~~~ 85 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPED--NKL 85 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHH--HHH
Confidence 455667777889999999999999999854 222222 37789999999998999999999999999865321 111
Q ss_pred hHH--hHHhhhcCcCcCCChHHHHHHHHHHHHhh
Q 000730 1103 ILL--NLSVRLRNLQVSMNVKMRRNAFAAFGALS 1134 (1326)
Q Consensus 1103 ~l~--~l~~~lrpffede~~~vR~aAi~LfG~L~ 1134 (1326)
... .+...+..++++.+..+|..|..+++.++
T Consensus 86 ~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 86 IVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 111 12334445667778999999999999875
No 59
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=95.89 E-value=0.16 Score=66.32 Aligned_cols=252 Identities=12% Similarity=0.157 Sum_probs=153.6
Q ss_pred hHHHHHHHHhhhhccccccchHHHHHHHHHhhhc-----CCchhhHHHHHHHHHHhhcCC-CChhHHHHHhhhccCCcch
Q 000730 983 EVQTICLILTKSINRQQRFQREAAAAALSEFVRY-----SGGFDSLLEQMVEALCRHVSD-ESPTVRGLCLRGLVQIPSI 1056 (1326)
Q Consensus 983 ~~~~i~~~L~~~L~s~~~~~Ri~a~aflsELl~~-----~~~~~~l~~~~i~~L~~~l~D-~~~~VR~lsLrGLgnl~~~ 1056 (1326)
.+..|+-|++-+++.++...|++|+-.++++|.. +.+.....|+++-.|..-+.| .+..||..-..-|+.+|.-
T Consensus 459 ~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~t 538 (1431)
T KOG1240|consen 459 KLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKT 538 (1431)
T ss_pred HHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHH
Confidence 4667777777777777777888888888887763 222345567777777777777 6667777666666666532
Q ss_pred --hhhhhHHHHHHH-HHhhccCCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCcCCChHHHHHHHHHHHHh
Q 000730 1057 --HIHQYATQVLSV-ILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGAL 1133 (1326)
Q Consensus 1057 --~v~~~~~~lL~a-ll~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~l~~~lrpffede~~~vR~aAi~LfG~L 1133 (1326)
..-.+...+=.+ +++.. +++ + .-....+.....+...+....-.|..|+.+-||.+=.+-.+.|
T Consensus 539 A~rFle~~q~~~~~g~~n~~---nse-------t---~~~~~~~~~~~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~L 605 (1431)
T KOG1240|consen 539 AYRFLELTQELRQAGMLNDP---NSE-------T---APEQNYNTELQALHHTVEQMVSSLLSDSPPIVKRALLESIIPL 605 (1431)
T ss_pred HHHHHHHHHHHHhcccccCc---ccc-------c---ccccccchHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHH
Confidence 111111111111 12221 211 0 0011112233444445555556778888899999988888888
Q ss_pred hhc-CCCcchHHHHHHHHhhhhHHHHhccCCChhHHHHHHHHHHhhchhhhh-hhhhhh----ccccCCCCCCCChHHHH
Q 000730 1134 SNF-GVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEI-GVYGIF----NSHCFNSDHRSDYETFV 1207 (1326)
Q Consensus 1134 ~~~-~~~~~~~~~~eQv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL~~-~l~~lf----~~~~~~~~~~l~~~~f~ 1207 (1326)
+.| |+.+.-+.+. .=|+-.|+|.++..|-|==.++--++.++|| .+.+.+ +. .+.|++..=-...+
T Consensus 606 C~FFGk~ksND~iL-------shLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~seyllPLl~Q-~ltD~EE~Viv~aL 677 (1431)
T KOG1240|consen 606 CVFFGKEKSNDVIL-------SHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRSVSEYLLPLLQQ-GLTDGEEAVIVSAL 677 (1431)
T ss_pred HHHhhhcccccchH-------HHHHHHhcCccHHHHHHHHhhccceEEEEeeeeHHHHHHHHHHH-hccCcchhhHHHHH
Confidence 884 5444444432 3345567899999888887788888899999 454433 22 24554322111122
Q ss_pred HHHHHHHHHh-C--cchHHHHHHHHHHhhcCCChhHHHHHHHHHhhhhccCc
Q 000730 1208 RDLTRQFVQH-F--PSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCD 1256 (1326)
Q Consensus 1208 ~~i~k~L~~~-~--~~~~~~~l~~~l~y~kS~~~~IR~aA~~fiG~l~~~~~ 1256 (1326)
.. .+.|.+. + .-.+-.++.....|+=-|..-||++|+.||-.+.+...
T Consensus 678 ~~-ls~Lik~~ll~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ls 728 (1431)
T KOG1240|consen 678 GS-LSILIKLGLLRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQLS 728 (1431)
T ss_pred HH-HHHHHHhcccchHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhhhh
Confidence 12 1223222 2 33466778888999999999999999999998887665
No 60
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=95.83 E-value=0.063 Score=66.94 Aligned_cols=281 Identities=16% Similarity=0.177 Sum_probs=177.5
Q ss_pred ChHHHHHHHHH--HHHHhhcchHHHHHHHhcCCCC--ChhhHHHHHHHHHHHHhhcCchhHHHHHHHHhhhhccccccch
Q 000730 928 EPLRAILTSFQ--AFCECVGDLEMRKILARDGEQN--DKEKWINLIGDVAGCVSIKRPKEVQTICLILTKSINRQQRFQR 1003 (1326)
Q Consensus 928 ~P~~~aleAlk--~ll~~~g~~~~~~~L~~~g~W~--~~e~~~~gV~lLAr~m~~~~~~~~~~i~~~L~~~L~s~~~~~R 1003 (1326)
++++...++.. .++ +.+.-++...|+.-.-=+ ....|..|.....+...+.-+ .+.++..|+-.+....
T Consensus 234 n~~~~~~~~~~~~gff-~n~fvd~~~fLeel~lks~~eK~~Ff~~L~~~l~~~pe~i~--~~kvlp~Ll~~~~~g~---- 306 (690)
T KOG1243|consen 234 NKLRFILECRLLGGFF-RNDFVDTLLFLEELRLKSVEEKQKFFSGLIDRLDNFPEEII--ASKVLPILLAALEFGD---- 306 (690)
T ss_pred chhhHHHHHHhccccc-cchHHHHHHHHHhcccCcHHHHHHHHHHHHHHHhhhhHHHH--HHHHHHHHHHHhhccc----
Confidence 35655555443 222 233334445555422111 566777777665554433221 3344444444443333
Q ss_pred HHHHHHHHHhhhcC--CchhhHHHHHHHHHHhhcCCCChhHHHHHhhhccCCcch-hhhhhHHHHHHHHHhhccCCChhH
Q 000730 1004 EAAAAALSEFVRYS--GGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI-HIHQYATQVLSVILALLDDLDESV 1080 (1326)
Q Consensus 1004 i~a~aflsELl~~~--~~~~~l~~~~i~~L~~~l~D~~~~VR~lsLrGLgnl~~~-~v~~~~~~lL~all~~L~d~d~~V 1080 (1326)
+|..|++=++..- ...+.....++-.|.+-++-++..||.+-|+++-+...+ .-..+-.++++-+..|+.|++..+
T Consensus 307 -a~~~~ltpl~k~~k~ld~~eyq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~L 385 (690)
T KOG1243|consen 307 -AASDFLTPLFKLGKDLDEEEYQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATL 385 (690)
T ss_pred -cchhhhhHHHHhhhhccccccccchhhhHHHHhcCcchHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHH
Confidence 5555666665531 112233455788999999999999999999999877655 334566889999999999999999
Q ss_pred HHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCcCCChHHHHHHHHHHHHhhhcCCCcchHHHHHHHHhhhhHHHHhc
Q 000730 1081 QLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHI 1160 (1326)
Q Consensus 1081 ~leAm~~L~~lL~~l~~~~~~~~l~~l~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~LvpLLlHL 1160 (1326)
+..++..+..+...|+...++.-++..--+++| |+...+|...-...|+++.
T Consensus 386 re~Tlksm~~La~kL~~~~Ln~Ellr~~ar~q~---d~~~~irtntticlgki~~------------------------- 437 (690)
T KOG1243|consen 386 REQTLKSMAVLAPKLSKRNLNGELLRYLARLQP---DEHGGIRTNTTICLGKIAP------------------------- 437 (690)
T ss_pred HHHHHHHHHHHHhhhchhhhcHHHHHHHHhhCc---cccCcccccceeeeccccc-------------------------
Confidence 999999999999998887776666665555555 6667777766666666543
Q ss_pred cCCChhHHHHHHHHHHhhchhhhhhhhhhhccccCCCCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHHhhcCCChhH
Q 000730 1161 YDDDLSVRQACRNTLKQVAPFMEIGVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPII 1240 (1326)
Q Consensus 1161 ~D~~~~V~~ack~tL~~~a~lL~~~l~~lf~~~~~~~~~~l~~~~f~~~i~k~L~~~~~~~~~~~l~~~l~y~kS~~~~I 1240 (1326)
+-.|.||+. + +.+ -| ..-+++|.++-
T Consensus 438 -~l~~~~R~~------------------v-----------L~~-af-----------------------tralkdpf~pa 463 (690)
T KOG1243|consen 438 -HLAASVRKR------------------V-----------LAS-AF-----------------------TRALKDPFVPA 463 (690)
T ss_pred -ccchhhhcc------------------c-----------cch-hh-----------------------hhhhcCCCCCc
Confidence 112233210 0 000 01 11357888888
Q ss_pred HHHHHHHHhhhhccCchhhhhhccHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHccccc
Q 000730 1241 QANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLLKSINSHS 1303 (1326)
Q Consensus 1241 R~aA~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k~~~~~~ 1303 (1326)
|.++++-.-...++++.+... ..+...+.- +.-||++.||..|-.++..+......++
T Consensus 464 R~a~v~~l~at~~~~~~~~va----~kIlp~l~p-l~vd~e~~vr~~a~~~i~~fl~kl~~~~ 521 (690)
T KOG1243|consen 464 RKAGVLALAATQEYFDQSEVA----NKILPSLVP-LTVDPEKTVRDTAEKAIRQFLEKLEKVS 521 (690)
T ss_pred hhhhhHHHhhcccccchhhhh----hhccccccc-cccCcccchhhHHHHHHHHHHhhhhhhc
Confidence 888876555555555544432 445666777 8899999999999999888775555554
No 61
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=95.77 E-value=0.012 Score=44.25 Aligned_cols=30 Identities=20% Similarity=0.311 Sum_probs=24.9
Q ss_pred HHHHHHHhccCCChhHHHHHHHHHHHHHHHc
Q 000730 1269 FGLLVVKLSQSADAIVRATCSSSLGWLLKSI 1299 (1326)
Q Consensus 1269 ~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k~~ 1299 (1326)
+..+.. +++||+|.||..|+++||.+.+.+
T Consensus 2 lp~l~~-~l~D~~~~VR~~a~~~l~~i~~~~ 31 (31)
T PF02985_consen 2 LPILLQ-LLNDPSPEVRQAAAECLGAIAEHC 31 (31)
T ss_dssp HHHHHH-HHT-SSHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHH-HcCCCCHHHHHHHHHHHHHHHhhC
Confidence 456777 899999999999999999998753
No 62
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.75 E-value=9.3 Score=48.97 Aligned_cols=378 Identities=13% Similarity=0.135 Sum_probs=190.0
Q ss_pred HHHhhc--CcccHHHHHHHHHHHHccCCCccCCCccCCCCCCCCCCCccchHHHHHHHHHHHHHhcCCcchHHHHHHhhH
Q 000730 828 FHAFSQ--HAVLSFLFLEHLISALNQTPFVKGDMEKGDYSSHSADTWIDDDILQAAILALTAFFRGGGKVGKKAVEKSYA 905 (1326)
Q Consensus 828 W~aLa~--d~~l~~~vL~~LL~~L~~~p~~~e~~~~~~~~~~~~~~~~~~~~~laA~~aL~Ell~~~~~~~~~av~~~fp 905 (1326)
--++|. .+++++.+...+-+.|+.+-++ +.=-|+.||.+-+..+| +.-+-....|.
T Consensus 128 L~alg~i~s~EmardlapeVe~Ll~~~~~~--------------------irKKA~Lca~r~irK~P--~l~e~f~~~~~ 185 (866)
T KOG1062|consen 128 LCALGNICSPEMARDLAPEVERLLQHRDPY--------------------IRKKAALCAVRFIRKVP--DLVEHFVIAFR 185 (866)
T ss_pred HHHhhccCCHHHhHHhhHHHHHHHhCCCHH--------------------HHHHHHHHHHHHHHcCc--hHHHHhhHHHH
Confidence 444554 6778888888888887775544 33458999999999998 43333333333
Q ss_pred HHHHHHHHHhhhcccCCCCCCCCh----HH---HHHHHHHHHHHhhcchHHHHHHHh--cCCCCChhhHHHHHH------
Q 000730 906 PVLAALTLQLGSCHGLASSGQHEP----LR---AILTSFQAFCECVGDLEMRKILAR--DGEQNDKEKWINLIG------ 970 (1326)
Q Consensus 906 ~Lf~aLL~ql~~~~~~~~~~~~~P----~~---~aleAlk~ll~~~g~~~~~~~L~~--~g~W~~~e~~~~gV~------ 970 (1326)
+++. -= -||+-..+ +.+ |. .+++-||. +++. .+..|+. .++.. +|.=+.||.
T Consensus 186 ~lL~----ek--~hGVL~~~-l~l~~e~c~~~~~~l~~fr~---l~~~--lV~iLk~l~~~~ys-peydv~gi~dPFLQi 252 (866)
T KOG1062|consen 186 KLLC----EK--HHGVLIAG-LHLITELCKISPDALSYFRD---LVPS--LVKILKQLTNSGYS-PEYDVHGISDPFLQI 252 (866)
T ss_pred HHHh----hc--CCceeeeH-HHHHHHHHhcCHHHHHHHHH---HHHH--HHHHHHHHhcCCCC-CccCccCCCchHHHH
Confidence 3322 11 23331111 111 22 24445553 3222 2444543 22322 222222221
Q ss_pred ---HHHHHHhhcCchhHHHHHHHHhhhhccccccchHHHHHHHHHhhhcC---CchhhHHHHHHHHHHhhcCCCChhHHH
Q 000730 971 ---DVAGCVSIKRPKEVQTICLILTKSINRQQRFQREAAAAALSEFVRYS---GGFDSLLEQMVEALCRHVSDESPTVRG 1044 (1326)
Q Consensus 971 ---lLAr~m~~~~~~~~~~i~~~L~~~L~s~~~~~Ri~a~aflsELl~~~---~~~~~l~~~~i~~L~~~l~D~~~~VR~ 1044 (1326)
.+-|-+-++. +.....|+.++--.-..-|..|=++=|++-|=+.+- ..+..+..-.+|.|.+-+..++-.+|=
T Consensus 253 ~iLrlLriLGq~d-~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirY 331 (866)
T KOG1062|consen 253 RILRLLRILGQND-ADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRY 331 (866)
T ss_pred HHHHHHHHhcCCC-ccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceee
Confidence 2344444433 345666666666555666666777777777765531 123455556677777777777777777
Q ss_pred HHhhhccCCcch---hhhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCcCCChH
Q 000730 1045 LCLRGLVQIPSI---HIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVK 1121 (1326)
Q Consensus 1045 lsLrGLgnl~~~---~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~l~~~lrpffede~~~ 1121 (1326)
++|.+|+.+-.. -+.+|+.++ +++|+|.|..+..+||.-+-.+++. ..+. .+..++-.|++.-.++
T Consensus 332 vaLn~L~r~V~~d~~avqrHr~tI----leCL~DpD~SIkrralELs~~lvn~---~Nv~----~mv~eLl~fL~~~d~~ 400 (866)
T KOG1062|consen 332 VALNMLLRVVQQDPTAVQRHRSTI----LECLKDPDVSIKRRALELSYALVNE---SNVR----VMVKELLEFLESSDED 400 (866)
T ss_pred eehhhHHhhhcCCcHHHHHHHHHH----HHHhcCCcHHHHHHHHHHHHHHhcc---ccHH----HHHHHHHHHHHhccHH
Confidence 777777755422 455555554 4455677777777777777666653 1222 2333444455544444
Q ss_pred HHHHHHHHHHHhh-hcCCCcchHHHHHHHHhhhhHHHHhccCCChhHHHHHHHHHHhhchhhhhhhhhhhccccCCCCCC
Q 000730 1122 MRRNAFAAFGALS-NFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEIGVYGIFNSHCFNSDHR 1200 (1326)
Q Consensus 1122 vR~aAi~LfG~L~-~~~~~~~~~~~~eQv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL~~~l~~lf~~~~~~~~~~ 1200 (1326)
+|+.-..---.++ +|. +.+.|+.+++.+.+-.-= .-
T Consensus 401 ~k~~~as~I~~laEkfa--P~k~W~idtml~Vl~~aG-----------------------------------------~~ 437 (866)
T KOG1062|consen 401 FKADIASKIAELAEKFA--PDKRWHIDTMLKVLKTAG-----------------------------------------DF 437 (866)
T ss_pred HHHHHHHHHHHHHHhcC--CcchhHHHHHHHHHHhcc-----------------------------------------cc
Confidence 4443332222222 122 233344333333222111 11
Q ss_pred CChHHHHHHHHHHHHHhCcchHHH---HHHHHHH---hhcCCChhHHHHHHHHHhhhhc----cCchhhhhhccHHHHHH
Q 000730 1201 SDYETFVRDLTRQFVQHFPSRIDS---YMGSTIQ---AFEAPWPIIQANAIYFSSSILC----LCDDQHILSLFYTQVFG 1270 (1326)
Q Consensus 1201 l~~~~f~~~i~k~L~~~~~~~~~~---~l~~~l~---y~kS~~~~IR~aA~~fiG~l~~----~~~~~~~~~~~~e~l~~ 1270 (1326)
.+ ++.++++.+.+..-+++.-.. =+..++. ...-+++++-+.|+|-||--+. ....++-..+.-++++.
T Consensus 438 V~-~dv~~nll~LIa~~~~e~~~y~~~rLy~a~~~~~~~~is~e~l~qVa~W~IGEYGdlll~~~~~~~p~~vtesdivd 516 (866)
T KOG1062|consen 438 VN-DDVVNNLLRLIANAFQELHEYAVLRLYLALSEDTLLDISQEPLLQVASWCIGEYGDLLLDGANEEEPIKVTESDIVD 516 (866)
T ss_pred cc-hhhHHHHHHHHhcCCcchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhhhhhHHhhcCccccCCCcCCHHHHHH
Confidence 11 234444444444333222110 0111111 2245677888999999994442 21122323344455666
Q ss_pred HHHHHhc-cCCChhHHHHHHHHHHHHH
Q 000730 1271 LLVVKLS-QSADAIVRATCSSSLGWLL 1296 (1326)
Q Consensus 1271 ~L~~~Ll-~Dpdp~VR~~Aa~aL~~l~ 1296 (1326)
-|..++. ...++.++.-|-.||-.|.
T Consensus 517 ~l~~v~~~~~s~~~tk~yal~Al~KLS 543 (866)
T KOG1062|consen 517 KLEKVLMSHSSDSTTKGYALTALLKLS 543 (866)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 5555222 2355777777777766554
No 63
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=95.73 E-value=0.098 Score=67.32 Aligned_cols=166 Identities=14% Similarity=0.202 Sum_probs=97.5
Q ss_pred HHHHHHHHhhhhcccc----ccchHHHHHHHHHhhhc-CCc--------------hhhHHHHHHHHHHhhcCCCChhHHH
Q 000730 984 VQTICLILTKSINRQQ----RFQREAAAAALSEFVRY-SGG--------------FDSLLEQMVEALCRHVSDESPTVRG 1044 (1326)
Q Consensus 984 ~~~i~~~L~~~L~s~~----~~~Ri~a~aflsELl~~-~~~--------------~~~l~~~~i~~L~~~l~D~~~~VR~ 1044 (1326)
-..++..+..+++++. ..-|.+|+.-++.+++. |.. ...+.+.+...|.......+...+.
T Consensus 429 t~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 508 (618)
T PF01347_consen 429 TEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKI 508 (618)
T ss_dssp -HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHH
T ss_pred CHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHH
Confidence 4666666666666543 23466788888888873 211 2345566667777777778889999
Q ss_pred HHhhhccCCcchhhhhhHHHHHHHHHhhccCC---ChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCc-CCCh
Q 000730 1045 LCLRGLVQIPSIHIHQYATQVLSVILALLDDL---DESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQV-SMNV 1120 (1326)
Q Consensus 1045 lsLrGLgnl~~~~v~~~~~~lL~all~~L~d~---d~~V~leAm~~L~~lL~~l~~~~~~~~l~~l~~~lrpffe-de~~ 1120 (1326)
++||||||++. +..++.+..-+.+. ...++..|+.+|+++...- ...+..++..| |++ .|..
T Consensus 509 ~~LkaLgN~g~-------~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~-~~~v~~~l~~I------~~n~~e~~ 574 (618)
T PF01347_consen 509 VYLKALGNLGH-------PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHC-PEKVREILLPI------FMNTTEDP 574 (618)
T ss_dssp HHHHHHHHHT--------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT--HHHHHHHHHHH------HH-TTS-H
T ss_pred HHHHHhhccCC-------chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcC-cHHHHHHHHHH------hcCCCCCh
Confidence 99999999986 34566666666665 3568888888888874432 33455555554 344 4667
Q ss_pred HHHHHHHHHHHHhhhcCCCcchHHHHHHHHhhhhHHHHhccCCChhHHHHHHHHH
Q 000730 1121 KMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTL 1175 (1326)
Q Consensus 1121 ~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~LvpLLlHL~D~~~~V~~ack~tL 1175 (1326)
+||.+|+.++=.-. + .... ++.+.-.+- .|++.+|+.....+|
T Consensus 575 EvRiaA~~~lm~~~-----P-~~~~----l~~i~~~l~--~E~~~QV~sfv~S~L 617 (618)
T PF01347_consen 575 EVRIAAYLILMRCN-----P-SPSV----LQRIAQSLW--NEPSNQVASFVYSHL 617 (618)
T ss_dssp HHHHHHHHHHHHT---------HHH----HHHHHHHHT--T-S-HHHHHHHHHHH
T ss_pred hHHHHHHHHHHhcC-----C-CHHH----HHHHHHHHh--hCchHHHHHHHHHhc
Confidence 88888876544311 1 1222 233332222 477888887766555
No 64
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.70 E-value=1.6 Score=53.48 Aligned_cols=244 Identities=13% Similarity=0.131 Sum_probs=166.0
Q ss_pred HHHHHHHHHhhcCCCChhHHHHHhhhcc---CCcchhhhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhccCCcCCc
Q 000730 1024 LEQMVEALCRHVSDESPTVRGLCLRGLV---QIPSIHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAV 1100 (1326)
Q Consensus 1024 ~~~~i~~L~~~l~D~~~~VR~lsLrGLg---nl~~~~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~ 1100 (1326)
++..+-.|.+++.+-||.+|...+.=|. +.+.-++-.|.+.+++.++.-|.|..++|+--+=.+|+..|........
T Consensus 165 L~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~ 244 (675)
T KOG0212|consen 165 LPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPS 244 (675)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCcc
Confidence 3456778889999999999998877554 3444488889999999999999999999998888888888887765544
Q ss_pred chhHHhHHhhhcCcCcCCChHHHHHHHHHHHHhhhcCCCcchHHHHHHHHhhhhHHHHhccCCChhHHHHHHHHHHhhch
Q 000730 1101 EPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAP 1180 (1326)
Q Consensus 1101 ~~~l~~l~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~ 1180 (1326)
+--...+..-+-|-.....+.++..|+.-.-..++..+ .. +.-+.-+.+.-+|-.+.|.++.-.+.|+.
T Consensus 245 s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g-~~---~l~~~s~il~~iLpc~s~~e~~~i~~~a~------- 313 (675)
T KOG0212|consen 245 SMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPG-RD---LLLYLSGILTAILPCLSDTEEMSIKEYAQ------- 313 (675)
T ss_pred ccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCC-cc---hhhhhhhhhhhcccCCCCCccccHHHHHH-------
Confidence 42333444455566777889999999888877777432 22 33333444455555566776642222222
Q ss_pred hhhhhhhhhhccccCCCCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHHhhcCCChhHHHHHHHHHhhhhccCchhhh
Q 000730 1181 FMEIGVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHI 1260 (1326)
Q Consensus 1181 lL~~~l~~lf~~~~~~~~~~l~~~~f~~~i~k~L~~~~~~~~~~~l~~~l~y~kS~~~~IR~aA~~fiG~l~~~~~~~~~ 1260 (1326)
..+-.+..++...-.+ ..++|+..++-+ ..|+.+...+-|-+|--.|-.+....|.+..
T Consensus 314 ~~n~~l~~l~s~~~~~--~~id~~~ii~vl-------------------~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~ 372 (675)
T KOG0212|consen 314 MVNGLLLKLVSSERLK--EEIDYGSIIEVL-------------------TKYLSDDREETRIAVLNWIILLYHKAPGQLL 372 (675)
T ss_pred HHHHHHHHHHhhhhhc--cccchHHHHHHH-------------------HHHhhcchHHHHHHHHHHHHHHHhhCcchhh
Confidence 2221222222221111 226666554433 3488888899999998888888888887766
Q ss_pred hhccHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHcccc
Q 000730 1261 LSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLLKSINSH 1302 (1326)
Q Consensus 1261 ~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k~~~~~ 1302 (1326)
... ..++..|.. -+.|++..|--.+-+-+..+.+.+++.
T Consensus 373 ~h~--~~if~tLL~-tLsd~sd~vvl~~L~lla~i~~s~~~~ 411 (675)
T KOG0212|consen 373 VHN--DSIFLTLLK-TLSDRSDEVVLLALSLLASICSSSNSP 411 (675)
T ss_pred hhc--cHHHHHHHH-hhcCchhHHHHHHHHHHHHHhcCcccc
Confidence 443 667888888 689999999888888777777766664
No 65
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=95.67 E-value=0.036 Score=54.30 Aligned_cols=111 Identities=19% Similarity=0.208 Sum_probs=77.0
Q ss_pred HHHHHHHhhccCCChhHHHHHHHHHHHHhccCCcCCcchhHH-hHHhhhcCcCcCCChHHHHHHHHHHHHhhhcCCCcch
Q 000730 1064 QVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILL-NLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQR 1142 (1326)
Q Consensus 1064 ~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~-~l~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~ 1142 (1326)
.+++.+++.|.+.+..+...|+.+|+++-...+. ....+.- .+...+.+++.+.++.+|..|..+++.++....
T Consensus 7 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~-~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~---- 81 (120)
T cd00020 7 GGLPALVSLLSSSDENVQREAAWALSNLSAGNND-NIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE---- 81 (120)
T ss_pred CChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHH-HHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH----
Confidence 3678888888888889999999999998865221 1111111 444555667888899999999999999987321
Q ss_pred HHHHHHHHh-hhhHHHHhccCCChhHHHHHHHHHHhhc
Q 000730 1143 EAFLEQIHA-MLPRLILHIYDDDLSVRQACRNTLKQVA 1179 (1326)
Q Consensus 1143 ~~~~eQv~~-~LvpLLlHL~D~~~~V~~ack~tL~~~a 1179 (1326)
..-...+.. .+.-|+-+++|++..|++.+-.+|..++
T Consensus 82 ~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 82 DNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 121222223 3455555567778999999999988764
No 66
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=95.53 E-value=0.64 Score=52.11 Aligned_cols=189 Identities=18% Similarity=0.263 Sum_probs=98.9
Q ss_pred HHHHHhhccCCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCcCCChHHHHHHHHHHHHhhhcCCCcchHHH
Q 000730 1066 LSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAF 1145 (1326)
Q Consensus 1066 L~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~l~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~~~~ 1145 (1326)
+.++...+.|..+..--|+.-.|+. ....+.-++++++ +.-++..+-||..|-..||++.. ...-.+
T Consensus 38 i~~i~ka~~d~s~llkhe~ay~LgQ----~~~~~Av~~l~~v-----l~desq~pmvRhEAaealga~~~----~~~~~~ 104 (289)
T KOG0567|consen 38 IKAITKAFIDDSALLKHELAYVLGQ----MQDEDAVPVLVEV-----LLDESQEPMVRHEAAEALGAIGD----PESLEI 104 (289)
T ss_pred HHHHHHhcccchhhhccchhhhhhh----hccchhhHHHHHH-----hcccccchHHHHHHHHHHHhhcc----hhhHHH
Confidence 5566666665322222244444443 2233344455443 34566778999999999999873 111111
Q ss_pred HHHHHhhhhHHHHhccCCChhHHHHHHHHHHhhchhhhh--hhhhhhccccCCC-C--CCCChHHHHHHHHHHHHHhCcc
Q 000730 1146 LEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEI--GVYGIFNSHCFNS-D--HRSDYETFVRDLTRQFVQHFPS 1220 (1326)
Q Consensus 1146 ~eQv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL~~--~l~~lf~~~~~~~-~--~~l~~~~f~~~i~k~L~~~~~~ 1220 (1326)
.++ . .+|++..|+..|..|+.+ ++| ......+...+.. + ...+..+ +.++-..|......
T Consensus 105 l~k--------~--~~dp~~~v~ETc~lAi~r----le~~~~~~~~~~~~p~~SvdPa~p~~~ss-v~~lr~~lld~t~~ 169 (289)
T KOG0567|consen 105 LTK--------Y--IKDPCKEVRETCELAIKR----LEWKDIIDKIANSSPYISVDPAPPANLSS-VHELRAELLDETKP 169 (289)
T ss_pred HHH--------H--hcCCccccchHHHHHHHH----HHHhhccccccccCccccCCCCCcccccc-HHHHHHHHHhcchh
Confidence 111 1 279999999999999998 456 2222111111100 0 0101111 34555566665555
Q ss_pred hHHHHHHHHHHhhcC----------------CChhHHHHHHHHHhhhhccCchhhhhhccHHHHHHHHHHHhc-cCCChh
Q 000730 1221 RIDSYMGSTIQAFEA----------------PWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLS-QSADAI 1283 (1326)
Q Consensus 1221 ~~~~~l~~~l~y~kS----------------~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll-~Dpdp~ 1283 (1326)
.+..| +++.|+++ +..-+|-.++...|++-... .+..|.+.|+ .-+.|+
T Consensus 170 l~~Ry--~amF~LRn~g~EeaI~al~~~l~~~SalfrhEvAfVfGQl~s~~------------ai~~L~k~L~d~~E~pM 235 (289)
T KOG0567|consen 170 LFERY--RAMFYLRNIGTEEAINALIDGLADDSALFRHEVAFVFGQLQSPA------------AIPSLIKVLLDETEHPM 235 (289)
T ss_pred HHHHH--hhhhHhhccCcHHHHHHHHHhcccchHHHHHHHHHHHhhccchh------------hhHHHHHHHHhhhcchH
Confidence 55555 55555554 34456666676666554322 1222332111 236677
Q ss_pred HHHHHHHHHHHHH
Q 000730 1284 VRATCSSSLGWLL 1296 (1326)
Q Consensus 1284 VR~~Aa~aL~~l~ 1296 (1326)
||.-||+|||.+.
T Consensus 236 VRhEaAeALGaIa 248 (289)
T KOG0567|consen 236 VRHEAAEALGAIA 248 (289)
T ss_pred HHHHHHHHHHhhc
Confidence 7777777776644
No 67
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=95.53 E-value=0.44 Score=61.40 Aligned_cols=307 Identities=15% Similarity=0.176 Sum_probs=154.4
Q ss_pred hHHHHHHHHhhhhccccccchHHHHHHHHHhhhcCCchhhHH-HHHHHHHHhhcCCCChhHHHHHhhhccCCcch-hhhh
Q 000730 983 EVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLL-EQMVEALCRHVSDESPTVRGLCLRGLVQIPSI-HIHQ 1060 (1326)
Q Consensus 983 ~~~~i~~~L~~~L~s~~~~~Ri~a~aflsELl~~~~~~~~l~-~~~i~~L~~~l~D~~~~VR~lsLrGLgnl~~~-~v~~ 1060 (1326)
..++++..|++.|++.+..-.+.++.|+-.|--......... ..++..|.+-+..++..++..++|-|.|++.+ .++.
T Consensus 287 ~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~ 366 (708)
T PF05804_consen 287 VNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPELRS 366 (708)
T ss_pred HhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHH
Confidence 346778888888988887778888888888765433322222 33777888888889999999999999999875 3322
Q ss_pred --hHHHHHHHHHhhccCCCh-hHHHHHHHHHHHH---hccCCcCCcchhHHhHHhhhcCcCcCCChHHHHHHHHHHHHhh
Q 000730 1061 --YATQVLSVILALLDDLDE-SVQLTAVSCLLTI---LKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALS 1134 (1326)
Q Consensus 1061 --~~~~lL~all~~L~d~d~-~V~leAm~~L~~l---L~~l~~~~~~~~l~~l~~~lrpffede~~~vR~aAi~LfG~L~ 1134 (1326)
-...++|.+...|.+.+. .+++..+.-|+.- =.....++.-+.++++ +++..++.+...++.+.-.++
T Consensus 367 ~mV~~GlIPkLv~LL~d~~~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~------Ll~~~~~~v~~eliaL~iNLa 440 (708)
T PF05804_consen 367 QMVSLGLIPKLVELLKDPNFREVALKILYNLSMDDEARSMFAYTDCIPQLMQM------LLENSEEEVQLELIALLINLA 440 (708)
T ss_pred HHHHCCCcHHHHHHhCCCchHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHH------HHhCCCccccHHHHHHHHHHh
Confidence 223356777777775432 2333222222210 0000111111222221 223333444444444444444
Q ss_pred hc-------CCCcchHHHHHHH--------------------------HhhhhHHHHhccC-CChhHHHHHHHHHHhhc-
Q 000730 1135 NF-------GVGSQREAFLEQI--------------------------HAMLPRLILHIYD-DDLSVRQACRNTLKQVA- 1179 (1326)
Q Consensus 1135 ~~-------~~~~~~~~~~eQv--------------------------~~~LvpLLlHL~D-~~~~V~~ack~tL~~~a- 1179 (1326)
.. +.|..-+.+.+.. ...+.||+-.+.. ++++..-.|=.+|....
T Consensus 441 ~~~rnaqlm~~g~gL~~L~~ra~~~~D~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~ 520 (708)
T PF05804_consen 441 LNKRNAQLMCEGNGLQSLMKRALKTRDPLLLKLIRNISQHDGPLKELFVDFIGDLAKIVSSGDSEEFVVECLGILANLTI 520 (708)
T ss_pred cCHHHHHHHHhcCcHHHHHHHHHhcccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhccc
Confidence 31 1111111122222 2222333322322 25566666777776665
Q ss_pred hhhhh-hhhh------hhccccCCCCCCCChHHHHHHHHHHHHH--hCcchHHH-----HHHHHHHhhcCCC--hhHHHH
Q 000730 1180 PFMEI-GVYG------IFNSHCFNSDHRSDYETFVRDLTRQFVQ--HFPSRIDS-----YMGSTIQAFEAPW--PIIQAN 1243 (1326)
Q Consensus 1180 ~lL~~-~l~~------lf~~~~~~~~~~l~~~~f~~~i~k~L~~--~~~~~~~~-----~l~~~l~y~kS~~--~~IR~a 1243 (1326)
+-++| .+-. .+.+. +.++ ..-++.+.+++..+.. ..++-+.. ++.+.+..|++-+ ..+=-.
T Consensus 521 ~~ld~~~ll~~~~llp~L~~~-L~~g--~~~dDl~LE~Vi~~gtla~d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQ 597 (708)
T PF05804_consen 521 PDLDWAQLLQEYNLLPWLKDL-LKPG--ASEDDLLLEVVILLGTLASDPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQ 597 (708)
T ss_pred CCcCHHHHHHhCCHHHHHHHH-hCCC--CCChHHHHHHHHHHHHHHCCHHHHHHHHhCChHHHHHHHHHhhCchHHHHHH
Confidence 33455 3311 11111 2221 1112333343333321 11111111 1333444444444 222222
Q ss_pred HHHHHhhhhccCchhhhhhccHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHcc
Q 000730 1244 AIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLLKSIN 1300 (1326)
Q Consensus 1244 A~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k~~~ 1300 (1326)
-++..+.++.|-+... .-+...++...|.. |.+|..+.||+.|..+|..+..+..
T Consensus 598 il~~f~~ll~h~~tr~-~ll~~~~~~~ylid-L~~d~N~~ir~~~d~~Ldii~e~d~ 652 (708)
T PF05804_consen 598 ILYVFYQLLFHEETRE-VLLKETEIPAYLID-LMHDKNAEIRKVCDNALDIIAEYDE 652 (708)
T ss_pred HHHHHHHHHcChHHHH-HHHhccchHHHHHH-HhcCCCHHHHHHHHHHHHHHHHhCH
Confidence 3333444444432111 11233557788999 8999999999999999999986654
No 68
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=95.53 E-value=0.094 Score=59.61 Aligned_cols=144 Identities=20% Similarity=0.235 Sum_probs=86.7
Q ss_pred HHHHHHhhhhccccc-cchHHHHHHHHHhhhcCCchhhHHHH--HHHHHHhhcCCCChhHHHHHhhhccCCcch-----h
Q 000730 986 TICLILTKSINRQQR-FQREAAAAALSEFVRYSGGFDSLLEQ--MVEALCRHVSDESPTVRGLCLRGLVQIPSI-----H 1057 (1326)
Q Consensus 986 ~i~~~L~~~L~s~~~-~~Ri~a~aflsELl~~~~~~~~l~~~--~i~~L~~~l~D~~~~VR~lsLrGLgnl~~~-----~ 1057 (1326)
+-+.-++.+|++..+ .-+-.|...++..-..+.. +..+.. .+..+..-+.+|+|.||.-++.+|.|++.. +
T Consensus 12 ~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~n-q~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~ 90 (254)
T PF04826_consen 12 QELQKLLCLLESTEDPFIQEKALIALGNSAAFPFN-QDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQ 90 (254)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhH-HHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHH
Confidence 334455555554433 2233333333333222322 222222 466777788999999999999999999853 6
Q ss_pred hhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCcCCChHHHHHHHHHHHHhhh
Q 000730 1058 IHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSN 1135 (1326)
Q Consensus 1058 v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~l~~~lrpffede~~~vR~aAi~LfG~L~~ 1135 (1326)
++.|.+.++.-+.+. ..|+++.+.+++.|.++- ++ .+...++.+..-.+.+++...+..+|.-+..++-.|+.
T Consensus 91 Ik~~i~~Vc~~~~s~--~lns~~Q~agLrlL~nLt--v~-~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~ 163 (254)
T PF04826_consen 91 IKMYIPQVCEETVSS--PLNSEVQLAGLRLLTNLT--VT-NDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSE 163 (254)
T ss_pred HHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHccC--CC-cchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhcc
Confidence 778888888887774 347889988888888873 22 22233333333333455556666666666666666654
No 69
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=95.53 E-value=0.41 Score=62.26 Aligned_cols=256 Identities=18% Similarity=0.205 Sum_probs=155.2
Q ss_pred hHHHHHHHHHHhhcCCCChhHHHHHhhhccCCcchhhhhhHHHHHHHHHhhccCCC-hhHHHHHHHHHHHHhccC-Cc--
Q 000730 1022 SLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSIHIHQYATQVLSVILALLDDLD-ESVQLTAVSCLLTILKSS-SK-- 1097 (1326)
Q Consensus 1022 ~l~~~~i~~L~~~l~D~~~~VR~lsLrGLgnl~~~~v~~~~~~lL~all~~L~d~d-~~V~leAm~~L~~lL~~l-~~-- 1097 (1326)
.-+|.++..|..+++|.+..||+-+.+|+|.++.+--..+..+++++.++.+-..+ +..-..|+.+|+.+-..= -.
T Consensus 337 eivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps 416 (1133)
T KOG1943|consen 337 EIVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPS 416 (1133)
T ss_pred HHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchH
Confidence 34577899999999999999999999999999877446678899999999666555 567778899888886530 00
Q ss_pred --CCcchhHHhHHhhhcCcCcCC------ChHHHHHHHHHHHHhhhcCCCcchHHHHHHHHhhhhHHHHhccCCChhHHH
Q 000730 1098 --DAVEPILLNLSVRLRNLQVSM------NVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQ 1169 (1326)
Q Consensus 1098 --~~~~~~l~~l~~~lrpffede------~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~LvpLLlHL~D~~~~V~~ 1169 (1326)
.++.|+++. -=.||+. ..+||-+|-.+-=++++.-..+..+++.+++...|+---+ =|++..+|.
T Consensus 417 ~l~dVvplI~k-----aL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~Al--FDrevncRR 489 (1133)
T KOG1943|consen 417 LLEDVVPLILK-----ALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVAL--FDREVNCRR 489 (1133)
T ss_pred HHHHHHHHHHH-----HhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHh--cCchhhHhH
Confidence 012222211 1134443 3789999988876666633333445566666665554444 499999999
Q ss_pred HHHHHHHhhch----h-hhhhhhhhhccccCCCCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHHhhcCCCh-hHHHH
Q 000730 1170 ACRNTLKQVAP----F-MEIGVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWP-IIQAN 1243 (1326)
Q Consensus 1170 ack~tL~~~a~----l-L~~~l~~lf~~~~~~~~~~l~~~~f~~~i~k~L~~~~~~~~~~~l~~~l~y~kS~~~-~IR~a 1243 (1326)
|+..||....- + -|-++....+=..... +. .-+.++|..+. +|++....++...+.-==+.|. .||.-
T Consensus 490 AAsAAlqE~VGR~~n~p~Gi~Lis~~dy~sV~~-rs----Ncy~~l~~~ia-~~~~y~~~~f~~L~t~Kv~HWd~~irel 563 (1133)
T KOG1943|consen 490 AASAALQENVGRQGNFPHGISLISTIDYFSVTN-RS----NCYLDLCVSIA-EFSGYREPVFNHLLTKKVCHWDVKIREL 563 (1133)
T ss_pred HHHHHHHHHhccCCCCCCchhhhhhcchhhhhh-hh----hHHHHHhHHHH-hhhhHHHHHHHHHHhcccccccHHHHHH
Confidence 99998876432 1 1112211111111110 11 12345555544 5676666666664443235674 48888
Q ss_pred HHHHHhhhhccCchhhhhhccHHHHHHHHHHHhccCCChhHHHHHHHHHHHHH
Q 000730 1244 AIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLL 1296 (1326)
Q Consensus 1244 A~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~ 1296 (1326)
|++-+-.+....+ +... +.++.-+.. ..--+|+.-|..+.-|.|.+-
T Consensus 564 aa~aL~~Ls~~~p-k~~a----~~~L~~lld-~~ls~~~~~r~g~~la~~ev~ 610 (1133)
T KOG1943|consen 564 AAYALHKLSLTEP-KYLA----DYVLPPLLD-STLSKDASMRHGVFLAAGEVI 610 (1133)
T ss_pred HHHHHHHHHHhhH-Hhhc----ccchhhhhh-hhcCCChHHhhhhHHHHHHHH
Confidence 8887776544443 2222 122222334 344577788876666665544
No 70
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.35 E-value=3.6 Score=51.82 Aligned_cols=198 Identities=18% Similarity=0.217 Sum_probs=118.6
Q ss_pred ccCCCCchh------HHHHhhcCcccHHHHHHHHHHHHccCCCccCCCccCCCCCCCCCCCccchHHHHHHHHHHHHHhc
Q 000730 818 LRGGWPMQD------AFHAFSQHAVLSFLFLEHLISALNQTPFVKGDMEKGDYSSHSADTWIDDDILQAAILALTAFFRG 891 (1326)
Q Consensus 818 L~~~lP~d~------~W~aLa~d~~l~~~vL~~LL~~L~~~p~~~e~~~~~~~~~~~~~~~~~~~~~laA~~aL~Ell~~ 891 (1326)
|+++-|+-| +++.+-.-|.-.+.-++.|-++|...-| -+--||++.+||+-+-
T Consensus 153 L~sskpYvRKkAIl~lykvFLkYPeAlr~~FprL~EkLeDpDp---------------------~V~SAAV~VICELArK 211 (877)
T KOG1059|consen 153 LNSSKPYVRKKAILLLYKVFLKYPEALRPCFPRLVEKLEDPDP---------------------SVVSAAVSVICELARK 211 (877)
T ss_pred HhcCchHHHHHHHHHHHHHHHhhhHhHhhhHHHHHHhccCCCc---------------------hHHHHHHHHHHHHHhh
Confidence 577788877 6888888888888888888887532211 1123899999998775
Q ss_pred CCcchHHHHHHhhHHHHHHHHHHhhhcccCCCCCCCChHHHHHHHHHHHHHhhcchHHHHHHHhcCCCCChhhHHHHHHH
Q 000730 892 GGKVGKKAVEKSYAPVLAALTLQLGSCHGLASSGQHEPLRAILTSFQAFCECVGDLEMRKILARDGEQNDKEKWINLIGD 971 (1326)
Q Consensus 892 ~~~~~~~av~~~fp~Lf~aLL~ql~~~~~~~~~~~~~P~~~aleAlk~ll~~~g~~~~~~~L~~~g~W~~~e~~~~gV~l 971 (1326)
+ |+=+ ...|-.=||-+-..++.|-..+.+..-|...
T Consensus 212 n------------Pkny---------------------L~LAP~ffkllttSsNNWmLIKiiKLF~aLt----------- 247 (877)
T KOG1059|consen 212 N------------PQNY---------------------LQLAPLFYKLLVTSSNNWVLIKLLKLFAALT----------- 247 (877)
T ss_pred C------------Cccc---------------------ccccHHHHHHHhccCCCeehHHHHHHHhhcc-----------
Confidence 4 1100 1123345565556677887777766544332
Q ss_pred HHHHHhhcCchhHHHHHHHHhhhhccccccchHHHHHHHHHhhhcC-------C--chhhHHHHHHHHHHhhcCCCChhH
Q 000730 972 VAGCVSIKRPKEVQTICLILTKSINRQQRFQREAAAAALSEFVRYS-------G--GFDSLLEQMVEALCRHVSDESPTV 1042 (1326)
Q Consensus 972 LAr~m~~~~~~~~~~i~~~L~~~L~s~~~~~Ri~a~aflsELl~~~-------~--~~~~l~~~~i~~L~~~l~D~~~~V 1042 (1326)
..-|..-+.++.-+...+ ++.+|+..+-|=+|.- + .......-.+..|..-+.|+++..
T Consensus 248 ------plEPRLgKKLieplt~li------~sT~AmSLlYECvNTVVa~s~s~g~~d~~asiqLCvqKLr~fiedsDqNL 315 (877)
T KOG1059|consen 248 ------PLEPRLGKKLIEPITELM------ESTVAMSLLYECVNTVVAVSMSSGMSDHSASIQLCVQKLRIFIEDSDQNL 315 (877)
T ss_pred ------ccCchhhhhhhhHHHHHH------HhhHHHHHHHHHHHHheeehhccCCCCcHHHHHHHHHHHhhhhhcCCccH
Confidence 222222222222222221 2234444444444421 0 111222335667777789999999
Q ss_pred HHHHhhhccCCcchhhhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhc
Q 000730 1043 RGLCLRGLVQIPSIHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILK 1093 (1326)
Q Consensus 1043 R~lsLrGLgnl~~~~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~ 1093 (1326)
|=++|-+++.|+.-+- ..++.-.+-++.+|+|.|+.|+++|+.-|--++.
T Consensus 316 KYlgLlam~KI~ktHp-~~Vqa~kdlIlrcL~DkD~SIRlrALdLl~gmVs 365 (877)
T KOG1059|consen 316 KYLGLLAMSKILKTHP-KAVQAHKDLILRCLDDKDESIRLRALDLLYGMVS 365 (877)
T ss_pred HHHHHHHHHHHhhhCH-HHHHHhHHHHHHHhccCCchhHHHHHHHHHHHhh
Confidence 9999999998875321 1123335567788999999999999987766664
No 71
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=95.20 E-value=2.9 Score=51.16 Aligned_cols=310 Identities=12% Similarity=0.118 Sum_probs=189.3
Q ss_pred ChhhHHHHHHHHHHHHhhcCch-hHHHHHHHHhhhhccccccchHHHHHHHHHhhhcCCchhhHHHHHHHHHHhhcCCCC
Q 000730 961 DKEKWINLIGDVAGCVSIKRPK-EVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDES 1039 (1326)
Q Consensus 961 ~~e~~~~gV~lLAr~m~~~~~~-~~~~i~~~L~~~L~s~~~~~Ri~a~aflsELl~~~~~~~~l~~~~i~~L~~~l~D~~ 1039 (1326)
++-.-+.++++|.+. +.+.. -.-.++.++..-..=.+.--.+.-+-..++++... ..++.++.-.|..|++|--
T Consensus 203 ~~isqYHalGlLyq~--kr~dkma~lklv~hf~~n~smknq~a~V~lvr~~~~ll~~n---~q~~~q~rpfL~~wls~k~ 277 (898)
T COG5240 203 NPISQYHALGLLYQS--KRTDKMAQLKLVEHFRGNASMKNQLAGVLLVRATVELLKEN---SQALLQLRPFLNSWLSDKF 277 (898)
T ss_pred ChHHHHHHHHHHHHH--hcccHHHHHHHHHHhhcccccccchhheehHHHHHHHHHhC---hHHHHHHHHHHHHHhcCcc
Confidence 444556678888873 33221 12233333333221111111333344556666643 2345667789999999976
Q ss_pred hhHHHHHhhhccCCcchh-hhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCcCC
Q 000730 1040 PTVRGLCLRGLVQIPSIH-IHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSM 1118 (1326)
Q Consensus 1040 ~~VR~lsLrGLgnl~~~~-v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~l~~~lrpffede 1118 (1326)
..|..-+.|.+..++... ...+..+.+.++-..|.......+..||+.|.++-..-+. .++..= ..+-.+..|+
T Consensus 278 emV~lE~Ar~v~~~~~~nv~~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~-kv~vcN----~evEsLIsd~ 352 (898)
T COG5240 278 EMVFLEAARAVCALSEENVGSQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQ-KVSVCN----KEVESLISDE 352 (898)
T ss_pred hhhhHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCc-eeeecC----hhHHHHhhcc
Confidence 667666666555443321 1234466667776777666666788999999998765432 232221 1345677888
Q ss_pred ChHHHHHHHHHHHHhhhcCCCcchHHHHHHHHhhhhHHHHhccCCChhHHHHHHHHHHhhchhhhh-hhhhhhccccCCC
Q 000730 1119 NVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEI-GVYGIFNSHCFNS 1197 (1326)
Q Consensus 1119 ~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL~~-~l~~lf~~~~~~~ 1197 (1326)
|-.+---||. .|.+.|....- +.+.+.++..+--+.|.=.-|+--+-++|+-..|. +| ..-..+..-+.+
T Consensus 353 Nr~IstyAIT---tLLKTGt~e~i----drLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~-k~~s~l~FL~~~L~~- 423 (898)
T COG5240 353 NRTISTYAIT---TLLKTGTEETI----DRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPS-KKLSYLDFLGSSLLQ- 423 (898)
T ss_pred cccchHHHHH---HHHHcCchhhH----HHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcH-HHHHHHHHHHHHHHh-
Confidence 8776666665 45564433333 33444455555556666555655555666555543 44 333333333233
Q ss_pred CCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHHhhcCCChhHHHHHHHHHhhhhccCchhhhhhccHHHHHHHHHHHhc
Q 000730 1198 DHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLS 1277 (1326)
Q Consensus 1198 ~~~l~~~~f~~~i~k~L~~~~~~~~~~~l~~~l~y~kS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll 1277 (1326)
++++.|-..+-+...-.++.-|+.-..-+...-.|..+.+-+ .-++..+|.++...|........+-.+++.++-
T Consensus 424 eGg~eFK~~~Vdaisd~~~~~p~skEraLe~LC~fIEDcey~--~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~iL--- 498 (898)
T COG5240 424 EGGLEFKKYMVDAISDAMENDPDSKERALEVLCTFIEDCEYH--QITVRILGILGREGPRAKTPGKYVRHIYNRLIL--- 498 (898)
T ss_pred cccchHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHhhcchh--HHHHHHHHHhcccCCCCCCcchHHHHHHHHHHH---
Confidence 356766555556666678888888888888877888776542 447889999999888666556677889998875
Q ss_pred cCCChhHHHHHHHHHHHHH
Q 000730 1278 QSADAIVRATCSSSLGWLL 1296 (1326)
Q Consensus 1278 ~Dpdp~VR~~Aa~aL~~l~ 1296 (1326)
+...||..|.+||..|.
T Consensus 499 --EN~ivRsaAv~aLskf~ 515 (898)
T COG5240 499 --ENNIVRSAAVQALSKFA 515 (898)
T ss_pred --hhhHHHHHHHHHHHHhc
Confidence 78999999999998776
No 72
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.17 E-value=0.54 Score=58.82 Aligned_cols=265 Identities=16% Similarity=0.141 Sum_probs=142.7
Q ss_pred CCCChhhHHHHHHHHHHHHhhcCchhHHHHHHHHhhhhccc---cccchHHHHHHHHHhhhcCCchhhHHHHHHHHHHhh
Q 000730 958 EQNDKEKWINLIGDVAGCVSIKRPKEVQTICLILTKSINRQ---QRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRH 1034 (1326)
Q Consensus 958 ~W~~~e~~~~gV~lLAr~m~~~~~~~~~~i~~~L~~~L~s~---~~~~Ri~a~aflsELl~~~~~~~~l~~~~i~~L~~~ 1034 (1326)
.|-+..+-+.-.+..|.-=++|++. ..+-++.+-|+|-+. ...+.--++-.--.|+.-... +.++..|.++
T Consensus 348 ~WlskAtNWaKFtAtAsLGvIH~G~-~~~~~~ll~pYLP~~~~~~s~y~EGGalyAlGLIhA~hG-----~~~~~yL~~~ 421 (929)
T KOG2062|consen 348 DWLSKATNWAKFTATASLGVIHRGH-ENQAMKLLAPYLPKEAGEGSGYKEGGALYALGLIHANHG-----RGITDYLLQQ 421 (929)
T ss_pred hHHhhcchHhhhhhhhhcceeeccc-cchHHHHhhhhCCccCCCCCCccccchhhhhhccccCcC-----ccHHHHHHHH
Confidence 4654444444444455544667764 334445556666552 222322222222245543322 2256788888
Q ss_pred cCC-CChhHHHHHhhhcc--CCcchhhhhhHHHHHHHHHhhccCCChhHHHHH---------------------------
Q 000730 1035 VSD-ESPTVRGLCLRGLV--QIPSIHIHQYATQVLSVILALLDDLDESVQLTA--------------------------- 1084 (1326)
Q Consensus 1035 l~D-~~~~VR~lsLrGLg--nl~~~~v~~~~~~lL~all~~L~d~d~~V~leA--------------------------- 1084 (1326)
+++ +++.||.=+.-||| +|+.... .+.+.+-.-|+. |+.|.-||
T Consensus 422 Lk~~~~e~v~hG~cLGlGLa~mGSa~~-----eiYe~lKevLy~-D~AvsGEAAgi~MGl~mlGt~~~eaiedm~~Ya~E 495 (929)
T KOG2062|consen 422 LKTAENEVVRHGACLGLGLAGMGSANE-----EIYEKLKEVLYN-DSAVSGEAAGIAMGLLMLGTANQEAIEDMLTYAQE 495 (929)
T ss_pred HHhccchhhhhhhhhhccchhcccccH-----HHHHHHHHHHhc-cchhhhhHHHHhhhhHhhCcCcHHHHHHHHHHhhh
Confidence 866 48999998888888 4443321 112222222322 22222222
Q ss_pred ----------HHHHHHHhccCCcCCcchhHHhHHhhhcCcCcCCChHHHHHHHHHHHHhhhcCCCcchHHHHHHHHhhhh
Q 000730 1085 ----------VSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLP 1154 (1326)
Q Consensus 1085 ----------m~~L~~lL~~l~~~~~~~~l~~l~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~Lv 1154 (1326)
--+++-++-.. +++..++. ..+..|.++-+|.+-+...+- ++++.... ..|
T Consensus 496 TQHeki~RGl~vGiaL~~ygr-qe~Ad~lI-------~el~~dkdpilR~~Gm~t~al--Ay~GTgnn---------kai 556 (929)
T KOG2062|consen 496 TQHEKIIRGLAVGIALVVYGR-QEDADPLI-------KELLRDKDPILRYGGMYTLAL--AYVGTGNN---------KAI 556 (929)
T ss_pred hhHHHHHHHHHHhHHHHHhhh-hhhhHHHH-------HHHhcCCchhhhhhhHHHHHH--HHhccCch---------hhH
Confidence 11222222111 11222222 223445677888776654432 43333232 345
Q ss_pred HHHHhc--cCCChhHHHHHHHHHHhhchhhhhhhhhhhccccCCCCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHHh
Q 000730 1155 RLILHI--YDDDLSVRQACRNTLKQVAPFMEIGVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQA 1232 (1326)
Q Consensus 1155 pLLlHL--~D~~~~V~~ack~tL~~~a~lL~~~l~~lf~~~~~~~~~~l~~~~f~~~i~k~L~~~~~~~~~~~l~~~l~y 1232 (1326)
.=|||. .|.|.+|+.++-.|++-+. +.| . + -.-.+.. ..
T Consensus 557 r~lLh~aVsD~nDDVrRaAVialGFVl---------------~~d-p----~-~~~s~V~------------------lL 597 (929)
T KOG2062|consen 557 RRLLHVAVSDVNDDVRRAAVIALGFVL---------------FRD-P----E-QLPSTVS------------------LL 597 (929)
T ss_pred HHhhcccccccchHHHHHHHHHheeeE---------------ecC-h----h-hchHHHH------------------HH
Confidence 556775 7999999999988876533 111 0 1 1111111 23
Q ss_pred hcCCChhHHHHHHHHHhhhhccCchhhhhhccHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHccc
Q 000730 1233 FEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLLKSINS 1301 (1326)
Q Consensus 1233 ~kS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k~~~~ 1301 (1326)
.+|-++++|..||+-+|...-.... ...++-|+. |-+||...||..|-.|++.+--..+.
T Consensus 598 ses~N~HVRyGaA~ALGIaCAGtG~--------~eAi~lLep-l~~D~~~fVRQgAlIa~amIm~Q~t~ 657 (929)
T KOG2062|consen 598 SESYNPHVRYGAAMALGIACAGTGL--------KEAINLLEP-LTSDPVDFVRQGALIALAMIMIQQTE 657 (929)
T ss_pred hhhcChhhhhhHHHHHhhhhcCCCc--------HHHHHHHhh-hhcChHHHHHHHHHHHHHHHHHhccc
Confidence 4567899999999999955433332 334556777 89999999999999999988755443
No 73
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.16 E-value=0.74 Score=61.85 Aligned_cols=277 Identities=14% Similarity=0.177 Sum_probs=168.0
Q ss_pred chhHHHHHHHHhhhhccccccchHHHHHHHHHhhhcCCch-h--hHHHHHHHHHHhhcCCCChhHHHHHhhhccCC---c
Q 000730 981 PKEVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGGF-D--SLLEQMVEALCRHVSDESPTVRGLCLRGLVQI---P 1054 (1326)
Q Consensus 981 ~~~~~~i~~~L~~~L~s~~~~~Ri~a~aflsELl~~~~~~-~--~l~~~~i~~L~~~l~D~~~~VR~lsLrGLgnl---~ 1054 (1326)
.....-+...+...+.|++...|-+++..+--+++++... + .-...+.......+.|.+.-++-.|-||||-+ +
T Consensus 813 ~~~~~~~~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelg 892 (1702)
T KOG0915|consen 813 DTRETIILKLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYELG 892 (1702)
T ss_pred CccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEecC
Confidence 3345567777888889999999999998888888876431 1 11355678889999999999999999999944 4
Q ss_pred chhh-hhhHHHHHHHHHhhccCCC----hh-H-------------HHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcC
Q 000730 1055 SIHI-HQYATQVLSVILALLDDLD----ES-V-------------QLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQ 1115 (1326)
Q Consensus 1055 ~~~v-~~~~~~lL~all~~L~d~d----~~-V-------------~leAm~~L~~lL~~l~~~~~~~~l~~l~~~lrpff 1115 (1326)
.+.. ...+..+++.+..|=.... ++ + -+.+..-|-++-..+++-++---+.++|..
T Consensus 893 d~~~k~~LV~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~qPdLVYKFM~LAnh----- 967 (1702)
T KOG0915|consen 893 DSSLKKSLVDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDLGQPDLVYKFMQLANH----- 967 (1702)
T ss_pred CchhHHHHHHHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhcCChHHHHHHHHHhhh-----
Confidence 4322 2234444444444322110 11 1 122333344444444444443333444432
Q ss_pred cCCChHHHHHHHHHHHHhhhcCCCcchHHHHHHHHhhhhHHHHhccCCChhHHHHHHHHHHhhchhhhhhhhhhhccccC
Q 000730 1116 VSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEIGVYGIFNSHCF 1195 (1326)
Q Consensus 1116 ede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL~~~l~~lf~~~~~ 1195 (1326)
+....=|..|..=||.+++-.+ +.+.-...+.++.|.-.=-||++.|..+-..-...+.
T Consensus 968 -~A~wnSk~GaAfGf~~i~~~a~----~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li---------------- 1026 (1702)
T KOG0915|consen 968 -NATWNSKKGAAFGFGAIAKQAG----EKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALI---------------- 1026 (1702)
T ss_pred -hchhhcccchhhchHHHHHHHH----HhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhc----------------
Confidence 2223345555566899987432 2333333445556666667999999886544332211
Q ss_pred CCCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHHhhcCCChhHHHHHHHHHhhhhccCchhhhhhccHHHHHHHHHHH
Q 000730 1196 NSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVK 1275 (1326)
Q Consensus 1196 ~~~~~l~~~~f~~~i~k~L~~~~~~~~~~~l~~~l~y~kS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~ 1275 (1326)
.|...--++|+++|.+-|..... |--.++|-+++.-+--+++--|.++..+.=.|.-..+++
T Consensus 1027 -~D~k~~vd~y~neIl~eLL~~lt---------------~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fR-- 1088 (1702)
T KOG0915|consen 1027 -TDSKKVVDEYLNEILDELLVNLT---------------SKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFR-- 1088 (1702)
T ss_pred -cChHHHHHHHHHHHHHHHHHhcc---------------chhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHH--
Confidence 12223335566666665555444 445679999999999999887755443332344444444
Q ss_pred hccCCChhHHHHHHHHHHHHHHHccc
Q 000730 1276 LSQSADAIVRATCSSSLGWLLKSINS 1301 (1326)
Q Consensus 1276 Ll~Dpdp~VR~~Aa~aL~~l~k~~~~ 1301 (1326)
-..|=-.+||..|..|...+.|.|-.
T Consensus 1089 vmDDIKEsVR~aa~~~~~~lsKl~vr 1114 (1702)
T KOG0915|consen 1089 VMDDIKESVREAADKAARALSKLCVR 1114 (1702)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 47888999999988887777766543
No 74
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.16 E-value=0.36 Score=59.66 Aligned_cols=248 Identities=17% Similarity=0.165 Sum_probs=148.2
Q ss_pred HHHHHHHhhhhccccccchHHHHHHHHHhhhcC-C------chhhHHHHHHHHHHhhcCCCChhHHHHHhhhccCCcch-
Q 000730 985 QTICLILTKSINRQQRFQREAAAAALSEFVRYS-G------GFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI- 1056 (1326)
Q Consensus 985 ~~i~~~L~~~L~s~~~~~Ri~a~aflsELl~~~-~------~~~~l~~~~i~~L~~~l~D~~~~VR~lsLrGLgnl~~~- 1056 (1326)
+.+.+...+.|+..++..|.+|+-.+.=+-|-+ . .+..+.+.+...++..++|-+-.||+.|.+.||.+...
T Consensus 233 ~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vS 312 (823)
T KOG2259|consen 233 KACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVS 312 (823)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhH
Confidence 345566778888999999999975555444422 1 13456677889999999999999999999999987532
Q ss_pred -hh--hhhHHHHHH-------------HHHhhcc-----CCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcC
Q 000730 1057 -HI--HQYATQVLS-------------VILALLD-----DLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQ 1115 (1326)
Q Consensus 1057 -~v--~~~~~~lL~-------------all~~L~-----d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~l~~~lrpff 1115 (1326)
++ .-+-+.++. .+++.-+ ..+++|.-|. .+.+..+-+--.-|-.+-.=|
T Consensus 313 ee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~advpsee----------~d~~~~siI~sGACGA~VhGl 382 (823)
T KOG2259|consen 313 EEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNADVPSEE----------DDEEEESIIPSGACGALVHGL 382 (823)
T ss_pred HHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCccccccCchhh----------ccccccccccccccceeeeec
Confidence 11 011111111 2222210 0012333333 111211111111233334668
Q ss_pred cCCChHHHHHHHHHHHHhhhcCCCcchHHHHHHHHhhhhHHHHhccCCChhHHHHHHHHHHhhchhhhhhhhhhhccccC
Q 000730 1116 VSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEIGVYGIFNSHCF 1195 (1326)
Q Consensus 1116 ede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL~~~l~~lf~~~~~ 1195 (1326)
|||-.+||.+|..-|+.|+-...+ |-...+..| +=-++|+-..||-.|-+||..++..+..
T Consensus 383 EDEf~EVR~AAV~Sl~~La~ssP~-----FA~~aldfL---vDMfNDE~~~VRL~ai~aL~~Is~~l~i----------- 443 (823)
T KOG2259|consen 383 EDEFYEVRRAAVASLCSLATSSPG-----FAVRALDFL---VDMFNDEIEVVRLKAIFALTMISVHLAI----------- 443 (823)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCC-----cHHHHHHHH---HHHhccHHHHHHHHHHHHHHHHHHHhee-----------
Confidence 999999999999999999974333 333333344 4456899999999999999998864221
Q ss_pred CCCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHHhhcCCChhHHHHHHHHHhhhhccCchhhhhhccHHHHHHHHHHH
Q 000730 1196 NSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVK 1275 (1326)
Q Consensus 1196 ~~~~~l~~~~f~~~i~k~L~~~~~~~~~~~l~~~l~y~kS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~ 1275 (1326)
. ++-++.++..| .+..++||.++--+++.. ..++..+-.+=+..+...|..
T Consensus 444 ~-------eeql~~il~~L-------------------~D~s~dvRe~l~elL~~~--~~~d~~~i~m~v~~lL~~L~k- 494 (823)
T KOG2259|consen 444 R-------EEQLRQILESL-------------------EDRSVDVREALRELLKNA--RVSDLECIDMCVAHLLKNLGK- 494 (823)
T ss_pred c-------HHHHHHHHHHH-------------------HhcCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHhhh-
Confidence 1 23444555544 445677888776655521 223333333333445555555
Q ss_pred hccCCChhHHHHHHH
Q 000730 1276 LSQSADAIVRATCSS 1290 (1326)
Q Consensus 1276 Ll~Dpdp~VR~~Aa~ 1290 (1326)
-=+|.|...+|.+-.
T Consensus 495 yPqDrd~i~~cm~~i 509 (823)
T KOG2259|consen 495 YPQDRDEILRCMGRI 509 (823)
T ss_pred CCCCcHHHHHHHHHH
Confidence 356888888886543
No 75
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.15 E-value=18 Score=48.45 Aligned_cols=204 Identities=18% Similarity=0.195 Sum_probs=135.0
Q ss_pred hhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCcCCChHHHHHHHHHHHHhhh--
Q 000730 1058 IHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSN-- 1135 (1326)
Q Consensus 1058 v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~l~~~lrpffede~~~vR~aAi~LfG~L~~-- 1135 (1326)
+..+...+-+.+.+++++....+...+..+|..|++.++.+....+.-.|..-|-.. .+.+..-|..||.++=.+++
T Consensus 691 ~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~-Ke~n~~aR~~Af~lL~~i~~i~ 769 (1176)
T KOG1248|consen 691 VEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSL-KEVNVKARRNAFALLVFIGAIQ 769 (1176)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhc-ccccHHHHhhHHHHHHHHHHHH
Confidence 345567777888888888889999999999999999998777777777777777776 89999999999999888773
Q ss_pred -c-CCCcchHHHHHHHHhhhhHHHHhccCCChhHHHHHHHHHHhhchhhhhhhhhhhccccCCCCCCCChHHHHHHHHHH
Q 000730 1136 -F-GVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEIGVYGIFNSHCFNSDHRSDYETFVRDLTRQ 1213 (1326)
Q Consensus 1136 -~-~~~~~~~~~~eQv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL~~~l~~lf~~~~~~~~~~l~~~~f~~~i~k~ 1213 (1326)
+ -.|.++ .+.+.+..++.+--. --+..-...|.. +...... +++. ...++
T Consensus 770 ~~~d~g~e~---~~~~lnefl~~Isag-l~gd~~~~~as~-Ivai~~i--------l~e~----~~~ld----------- 821 (1176)
T KOG1248|consen 770 SSLDDGNEP---ASAILNEFLSIISAG-LVGDSTRVVASD-IVAITHI--------LQEF----KNILD----------- 821 (1176)
T ss_pred hhhcccccc---hHHHHHHHHHHHHhh-hcccHHHHHHHH-HHHHHHH--------HHHH----hcccc-----------
Confidence 1 122222 122333333333221 001112222221 2222111 1110 00010
Q ss_pred HHHhCcchHHHHHHHHHHhhcCCChhHHHHHHHHHhhhhccCchhhhhhccHHHHHHHHHHHhccCCChhHHHHHHHHHH
Q 000730 1214 FVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLG 1293 (1326)
Q Consensus 1214 L~~~~~~~~~~~l~~~l~y~kS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~ 1293 (1326)
-+.+..++.+...|+.|..+.|+.+|+-|+--++.-+|..... -..+++...+-. |.+|----||.+.-.=|.
T Consensus 822 -----~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~-~~~~~LL~sll~-ls~d~k~~~r~Kvr~Lle 894 (1176)
T KOG1248|consen 822 -----DETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLS-PHLEELLPSLLA-LSHDHKIKVRKKVRLLLE 894 (1176)
T ss_pred -----HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHh-hhHHHHHHHHHH-HHHhhhHHHHHHHHHHHH
Confidence 1234557777788999999999999999999888888855543 445778888888 899999999988777766
Q ss_pred HHHH
Q 000730 1294 WLLK 1297 (1326)
Q Consensus 1294 ~l~k 1297 (1326)
.|.+
T Consensus 895 kLir 898 (1176)
T KOG1248|consen 895 KLIR 898 (1176)
T ss_pred HHHH
Confidence 6653
No 76
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=95.12 E-value=1.5 Score=51.44 Aligned_cols=232 Identities=15% Similarity=0.111 Sum_probs=133.6
Q ss_pred HHHhhcCCCChhHHHHHhhhccCCcch-----hhhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhccCC-cCCcchh
Q 000730 1030 ALCRHVSDESPTVRGLCLRGLVQIPSI-----HIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSS-KDAVEPI 1103 (1326)
Q Consensus 1030 ~L~~~l~D~~~~VR~lsLrGLgnl~~~-----~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~-~~~~~~~ 1103 (1326)
-....+.|-+...|.-+|+++-++..+ .+.....+++++++.++......-..-|..+++-+.=.++ ......+
T Consensus 47 ~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei 126 (309)
T PF05004_consen 47 EAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEI 126 (309)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHH
Confidence 334455777899999999999877533 5667778999999999987655444456666666644444 2333444
Q ss_pred HHhHHhhhcCcCcCC--ChHHHHHHHHHHHHhhhcCCCcchHHHHH--HHHhhhhHHHHhccCCChhHHHHHHHHHHhhc
Q 000730 1104 LLNLSVRLRNLQVSM--NVKMRRNAFAAFGALSNFGVGSQREAFLE--QIHAMLPRLILHIYDDDLSVRQACRNTLKQVA 1179 (1326)
Q Consensus 1104 l~~l~~~lrpffede--~~~vR~aAi~LfG~L~~~~~~~~~~~~~e--Qv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a 1179 (1326)
+-.+-..|++...|. ...+|.+++..+|-+.-++.+ ..+...+ +.+..+.....+=.|.+..++.+...+--.++
T Consensus 127 ~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~-d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~a 205 (309)
T PF05004_consen 127 FEELKPVLKRILTDSSASPKARAACLEALAICTFVGGS-DEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAA 205 (309)
T ss_pred HHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcC-ChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHH
Confidence 445544555555543 357899999999988765544 3333331 44454444444444444222222222222333
Q ss_pred hhhhh-hhhhhhccccCCCCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHHhhcCCChhHHHHHHHHHhhhhccCch-
Q 000730 1180 PFMEI-GVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDD- 1257 (1326)
Q Consensus 1180 ~lL~~-~l~~lf~~~~~~~~~~l~~~~f~~~i~k~L~~~~~~~~~~~l~~~l~y~kS~~~~IR~aA~~fiG~l~~~~~~- 1257 (1326)
.+-.| .+-..... ..+. +. +...+......+.|+...||-+|.-.|.++.-....
T Consensus 206 AL~aW~lLlt~~~~-----------~~~~-~~-----------~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~~~ 262 (309)
T PF05004_consen 206 ALSAWALLLTTLPD-----------SKLE-DL-----------LEEALPALSELLDSDDVDVRIAAGEAIALLYELARDH 262 (309)
T ss_pred HHHHHHHHHhcCCH-----------HHHH-HH-----------HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhcc
Confidence 44555 33322211 0111 11 112233334488999999999999999988554332
Q ss_pred -hhhhhccHHHHHHHHHHHhccCCChhHHH
Q 000730 1258 -QHILSLFYTQVFGLLVVKLSQSADAIVRA 1286 (1326)
Q Consensus 1258 -~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~ 1286 (1326)
+.....+.+.+++.+.. |-.|..-.+-+
T Consensus 263 ~~~~~~~~~~~l~~~l~~-La~dS~K~~sK 291 (309)
T PF05004_consen 263 EEDFLYEDMEELLEQLRE-LATDSSKSRSK 291 (309)
T ss_pred cccccccCHHHHHHHHHH-HHHhccCccch
Confidence 12233467888888888 77776444433
No 77
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=95.10 E-value=0.51 Score=60.56 Aligned_cols=189 Identities=17% Similarity=0.205 Sum_probs=126.3
Q ss_pred ChhhHHHHHHHHHHHHhhcCchhHHHHHHHHhhhhccccccchHHHHHHHHHhhhcCCchhhHHHHHHHHHHhhcCCCCh
Q 000730 961 DKEKWINLIGDVAGCVSIKRPKEVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESP 1040 (1326)
Q Consensus 961 ~~e~~~~gV~lLAr~m~~~~~~~~~~i~~~L~~~L~s~~~~~Ri~a~aflsELl~~~~~~~~l~~~~i~~L~~~l~D~~~ 1040 (1326)
+...=++|+--+-..|..+.. ++.++..+++...+.+-..+-. ++--+.+.+.....+---++|.+.+-+.||||
T Consensus 32 n~~~kidAmK~iIa~M~~G~d--mssLf~dViK~~~trd~ElKrL---~ylYl~~yak~~P~~~lLavNti~kDl~d~N~ 106 (757)
T COG5096 32 NDYKKIDAMKKIIAQMSLGED--MSSLFPDVIKNVATRDVELKRL---LYLYLERYAKLKPELALLAVNTIQKDLQDPNE 106 (757)
T ss_pred ChHHHHHHHHHHHHHHhcCCC--hHHHHHHHHHHHHhcCHHHHHH---HHHHHHHHhccCHHHHHHHHHHHHhhccCCCH
Confidence 455567777777777766554 7777777777766444332221 12222233333222222367899999999999
Q ss_pred hHHHHHhhhccCCcchhhhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCcCCCh
Q 000730 1041 TVRGLCLRGLVQIPSIHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNV 1120 (1326)
Q Consensus 1041 ~VR~lsLrGLgnl~~~~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~l~~~lrpffede~~ 1120 (1326)
.+|.+|+|-||.+... +..+++++++...+.|.+.-|+-.|..++.++-+. +..-+... .....+.-+..|+++
T Consensus 107 ~iR~~AlR~ls~l~~~---el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~l-d~~l~~~~--g~~~~l~~l~~D~dP 180 (757)
T COG5096 107 EIRGFALRTLSLLRVK---ELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRL-DKDLYHEL--GLIDILKELVADSDP 180 (757)
T ss_pred HHHHHHHHHHHhcChH---HHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhc-CHhhhhcc--cHHHHHHHHhhCCCc
Confidence 9999999999998754 34678899999999999999999999999999854 33322221 012233456779999
Q ss_pred HHHHHHHHHHHHhhhcCCCcchHHHHHHHHhhhhHHHHhccCCC
Q 000730 1121 KMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDD 1164 (1326)
Q Consensus 1121 ~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~LvpLLlHL~D~~ 1164 (1326)
.|-++|+..+-.+-. ..-.++...+...+..|.+-+.+.+
T Consensus 181 ~Vi~nAl~sl~~i~~----e~a~~~~~~~~~~i~~l~~~~~~~~ 220 (757)
T COG5096 181 IVIANALASLAEIDP----ELAHGYSLEVILRIPQLDLLSLSVS 220 (757)
T ss_pred hHHHHHHHHHHHhch----hhhhhHHHHHHHHhhhccchhhhhh
Confidence 999999999888765 1345555666666666555444443
No 78
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=95.00 E-value=19 Score=47.82 Aligned_cols=168 Identities=12% Similarity=0.128 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHhhh-cCCCcchHHHHHHHHhhhhHHHHhccCC-ChhHHHHHHHHHHhhchhhhh-hhhhhhcccc---
Q 000730 1121 KMRRNAFAAFGALSN-FGVGSQREAFLEQIHAMLPRLILHIYDD-DLSVRQACRNTLKQVAPFMEI-GVYGIFNSHC--- 1194 (1326)
Q Consensus 1121 ~vR~aAi~LfG~L~~-~~~~~~~~~~~eQv~~~LvpLLlHL~D~-~~~V~~ack~tL~~~a~lL~~-~l~~lf~~~~--- 1194 (1326)
.+|.+|+..||+++. +......+.. ..+-..+-|+-++ +..+|.--..+++..-.++-- .+.+..++..
T Consensus 691 ~i~~~av~av~~l~s~y~~~d~~~~~-----~li~~~ls~~~~~~~~~~r~g~~lal~~lp~~~i~~~~q~~lc~~~l~~ 765 (1133)
T KOG1943|consen 691 QIRDAAVSAVSDLVSTYVKADEGEEA-----PLITRYLSRLTKCSEERIRRGLILALGVLPSELIHRHLQEKLCKLVLEL 765 (1133)
T ss_pred HHHHHHHHHHHHHHHHHHhcCchhhh-----HHHHHHHHHhcCchHHHHHHHHHHHHccCcHHhhchHHHHHHHHHHhcc
Confidence 899999999999996 2222222221 1122234555555 566776666666665543322 3333333221
Q ss_pred -----CCCCCCCChHHHHHHHHHHHH-HhCcchHHHHHHHHH----HhhcCCChh----HHHHHHHHHhhhhccCc-hhh
Q 000730 1195 -----FNSDHRSDYETFVRDLTRQFV-QHFPSRIDSYMGSTI----QAFEAPWPI----IQANAIYFSSSILCLCD-DQH 1259 (1326)
Q Consensus 1195 -----~~~~~~l~~~~f~~~i~k~L~-~~~~~~~~~~l~~~l----~y~kS~~~~----IR~aA~~fiG~l~~~~~-~~~ 1259 (1326)
|.+.++.. -.-+..+|+... ..+++.++.|....+ .|.-+.+.+ ||.+|+.-+-.+.-... +..
T Consensus 766 ~p~d~~a~aR~~~-V~al~~v~~~~~~~~~~~~~~k~~e~LL~~lddYttd~rGDVGswVReaAm~al~~~~~~l~~p~~ 844 (1133)
T KOG1943|consen 766 LPSDAWAEARQQN-VKALAHVCKTVTSLLFSESIEKFRETLLNALDDYTTDSRGDVGSWVREAAMKALSSLLDTLSSPKL 844 (1133)
T ss_pred CcccccHHHHHHH-HHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcccccCccHHHHHHHHHHHHHHhhhhhhcCccc
Confidence 11111111 112334455554 345555555544333 488888865 79999887765544333 222
Q ss_pred hhhccHHHHHHHHHHHhccCCCh---hHHHHHHHHHHHHHHH
Q 000730 1260 ILSLFYTQVFGLLVVKLSQSADA---IVRATCSSSLGWLLKS 1298 (1326)
Q Consensus 1260 ~~~~~~e~l~~~L~~~Ll~Dpdp---~VR~~Aa~aL~~l~k~ 1298 (1326)
+|-+.+...... +.+-+-+ ..|..|+.++..+...
T Consensus 845 ---ld~~~i~~~~~~-~vqQ~veKIdrlre~a~~~~~qi~~~ 882 (1133)
T KOG1943|consen 845 ---LDEDSINRIIRY-FVQQAVEKIDRLRELAASALNQIVVH 882 (1133)
T ss_pred ---ccHHHHHHHHHH-HHHHhHHHHHHHHHHHHHHHhceeec
Confidence 233334444443 3332333 3366667666655543
No 79
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=94.93 E-value=2.1 Score=48.96 Aligned_cols=220 Identities=18% Similarity=0.170 Sum_probs=153.4
Q ss_pred HHHHHHHHhhccCCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCc--CCChHH-------------HHHHH
Q 000730 1063 TQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQV--SMNVKM-------------RRNAF 1127 (1326)
Q Consensus 1063 ~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~l~~~lrpffe--de~~~v-------------R~aAi 1127 (1326)
+|+.=+..+.|+...|..-++|+..|.+++.+++-.+ +-..+.....+|--. ..-+.+ -..++
T Consensus 6 pQlFW~~vAcL~S~~E~EF~~aL~lL~~~l~k~dl~~--~~~~~~L~~~~p~~we~~~f~Glq~Ll~KGL~Ss~t~e~tl 83 (262)
T PF14225_consen 6 PQLFWTAVACLESIHEHEFLEALSLLNKLLDKLDLDD--PDVRDVLESSQPQLWEWGNFEGLQPLLLKGLRSSSTYELTL 83 (262)
T ss_pred hHHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhcCCch--HHHHHHHHHhCCccccCCCchhHHHHHhCccCCCCcHHHHH
Confidence 6666777788887789999999999999999987543 222333344455432 122333 35678
Q ss_pred HHHHHhhhcC----CCcchHHHHHHHHhhhhHHHHhccCCCh----hHHHHHHHHHHhhchhhhh-hhhhhhccccCCCC
Q 000730 1128 AAFGALSNFG----VGSQREAFLEQIHAMLPRLILHIYDDDL----SVRQACRNTLKQVAPFMEI-GVYGIFNSHCFNSD 1198 (1326)
Q Consensus 1128 ~LfG~L~~~~----~~~~~~~~~eQv~~~LvpLLlHL~D~~~----~V~~ack~tL~~~a~lL~~-~l~~lf~~~~~~~~ 1198 (1326)
.++..|...- .|.....+.-.+..+++-++.|+.+++| .-+..+..++...|.--+. .+..++...+ .+
T Consensus 84 ~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~~~~~La~il~~ya--~~ 161 (262)
T PF14225_consen 84 RLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQGLPNLARILSSYA--KG 161 (262)
T ss_pred HHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhCCCccHHHHHHHHH--hc
Confidence 8888888731 1223336777899999999999999992 4556677888888876666 6666555422 22
Q ss_pred CCCChHHHHHHHHHHHHHhC-cchHHHHHHHHHHhhcCCChhHHHHHHHHHhhhhccCchhhhhhccHHHHHHHHHHHhc
Q 000730 1199 HRSDYETFVRDLTRQFVQHF-PSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLS 1277 (1326)
Q Consensus 1199 ~~l~~~~f~~~i~k~L~~~~-~~~~~~~l~~~l~y~kS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll 1277 (1326)
+--+-++|++.+++++-+.| |+.-..-+.-.+..+.+.-+-+|......+-.++++.+.+.- .+ .+++..+.+ |+
T Consensus 162 ~fr~~~dfl~~v~~~l~~~f~P~~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~~~--~~-~dlispllr-lL 237 (262)
T PF14225_consen 162 RFRDKDDFLSQVVSYLREAFFPDHEFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMRSP--HG-ADLISPLLR-LL 237 (262)
T ss_pred CCCCHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCCCC--cc-hHHHHHHHH-Hh
Confidence 22334899999999999988 787666666677888888889999999999999998875532 44 446777777 45
Q ss_pred cCCChhHHHHHHHHHHHHH
Q 000730 1278 QSADAIVRATCSSSLGWLL 1296 (1326)
Q Consensus 1278 ~Dpdp~VR~~Aa~aL~~l~ 1296 (1326)
+.+ .+.|||..+.
T Consensus 238 ~t~------~~~eAL~VLd 250 (262)
T PF14225_consen 238 QTD------LWMEALEVLD 250 (262)
T ss_pred CCc------cHHHHHHHHH
Confidence 543 4566666654
No 80
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.88 E-value=14 Score=45.74 Aligned_cols=372 Identities=17% Similarity=0.178 Sum_probs=214.4
Q ss_pred HHHHHHHHHhhhcCCCCcccHHHHHHHHH-HHHHHhcChhHHHhhHHHHHHHHHHHHHHhhhhcccccCCCCCCccchhh
Q 000730 520 NLITLLCAILLTSGEDGRSRADQLLHILR-QIDQYVSSPVEYQRRRSCLAVYEMLLKFRTLCVIGYCALGCHGSCTHIKQ 598 (1326)
Q Consensus 520 al~~lL~~ll~~~~~d~~~~~~~L~~~l~-~l~pwl~S~~~~eR~RA~~~~~~lL~~~~~~~~~~~c~~~~~~~~~~~~~ 598 (1326)
.+.++...++.++. .+++..+++ ....++.|.....|+-++--.+.+-- | ||
T Consensus 23 elEk~Vk~l~~~~~------~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~i----------a-Lg---------- 75 (675)
T KOG0212|consen 23 ELEKLVKDLVNNND------YDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAI----------A-LG---------- 75 (675)
T ss_pred HHHHHHHHHHccCc------HHHHHHHHHHHHHHhccCcccccccchHHHHHHHHH----------H-hc----------
Confidence 34556666665543 677777777 44577777777777744432221111 0 00
Q ss_pred hhhhhhccCCCCCCcccCCchhhhhhhhHHHHhhccccCCChhHHHHHHHHHHHHHHHHhhCCCCCCCCCCcchhhhhhh
Q 000730 599 IDRAVLGNFSNLPSAYVLPSREALCLGNRVIMYLPRCADTDSEVRKISAQILDQLFSISLSLPRPVGSSSGIDLELSYGA 678 (1326)
Q Consensus 599 ~~~~~~~~~~~~ps~f~~~~~~f~~lG~Lvg~l~prC~D~~~~iR~~A~~~i~~Ll~I~l~~~~~~~~~~~~~~~~~~~~ 678 (1326)
- + ....+-.++--..++|.|++..||-.|-|.+|-+-.++. |..
T Consensus 76 --------~-~----------~~~Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k------~~v----------- 119 (675)
T KOG0212|consen 76 --------I-K----------DAGYLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAK------GEV----------- 119 (675)
T ss_pred --------c-c----------cHHHHHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhc------cCc-----------
Confidence 0 0 112344555566788999999999999998887655532 111
Q ss_pred hhhcHHHHHHhccCCCCChhHHHHHHHHHHHccCChhHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHh----hhcccc
Q 000730 679 LSSLEDVIAILRSDASIDPSEVFNRIVSSVCILLTKDELVATLHSCTTAICDRTKQSAEGAIQAVVEFVT----KRGNEL 754 (1326)
Q Consensus 679 l~~l~~~~~~l~~~~~~~~~~~~~~i~~~i~~~L~~~el~~ll~~ll~~L~d~~~~~~~~A~~~L~~~l~----~rg~~L 754 (1326)
...|+.|..++|+. ..|+ .+.+++++.++.-++| ++.+.+
T Consensus 120 -------------------~~~Fn~iFdvL~kl----------------saDs-d~~V~~~aeLLdRLikdIVte~~~tF 163 (675)
T KOG0212|consen 120 -------------------LVYFNEIFDVLCKL----------------SADS-DQNVRGGAELLDRLIKDIVTESASTF 163 (675)
T ss_pred -------------------ccchHHHHHHHHHH----------------hcCC-ccccccHHHHHHHHHHHhcccccccc
Confidence 00111222221111 1222 2345666666655554 444455
Q ss_pred cccchhhHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccCchhHHHHHHhhhcccchhhhhccccCCCCchhHHHHhhcC
Q 000730 755 SETDVSRTTQSLLSAAVHITDKHLRLETLGAISCLAENTNSKIVFNEVLATAGKDIVTKDISRLRGGWPMQDAFHAFSQH 834 (1326)
Q Consensus 755 ~e~~V~~I~~~I~~~l~~i~~~~~r~~~l~ai~~La~~h~~~vV~~~Ll~~~~~~~~~~~~~~L~~~lP~d~~W~aLa~d 834 (1326)
..++++..+..++..+ .+.+|+.++.=++.|-..+.-+.+ +.+ |-=+|-++..|+..
T Consensus 164 ---sL~~~ipLL~eriy~~-n~~tR~flv~Wl~~Lds~P~~~m~-~yl------------------~~~ldGLf~~LsD~ 220 (675)
T KOG0212|consen 164 ---SLPEFIPLLRERIYVI-NPMTRQFLVSWLYVLDSVPDLEMI-SYL------------------PSLLDGLFNMLSDS 220 (675)
T ss_pred ---CHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHhcCCcHHHH-hcc------------------hHHHHHHHHHhcCC
Confidence 2788888888888877 678999999999999888766654 322 01123478888876
Q ss_pred cccH----HHHHHHHHHHHccCCCccCCCccCCCCCCCCCCCccchHH---HHHHHHHHHHHhcCCcchHHHHHHhhHHH
Q 000730 835 AVLS----FLFLEHLISALNQTPFVKGDMEKGDYSSHSADTWIDDDIL---QAAILALTAFFRGGGKVGKKAVEKSYAPV 907 (1326)
Q Consensus 835 ~~l~----~~vL~~LL~~L~~~p~~~e~~~~~~~~~~~~~~~~~~~~~---laA~~aL~Ell~~~~~~~~~av~~~fp~L 907 (1326)
..-. ...|..+|.-+.+.|..-+-++..+.. .++.++..| +.|.-=|.|+.+.+ +..+..++|.+
T Consensus 221 s~eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vl----v~~l~ss~~~iq~~al~Wi~efV~i~----g~~~l~~~s~i 292 (675)
T KOG0212|consen 221 SDEVRTLTDTLLSEFLAEIRSSPSSMDYDDMINVL----VPHLQSSEPEIQLKALTWIQEFVKIP----GRDLLLYLSGI 292 (675)
T ss_pred cHHHHHHHHHHHHHHHHHHhcCccccCcccchhhc----cccccCCcHHHHHHHHHHHHHHhcCC----Ccchhhhhhhh
Confidence 6444 455566777777777653311111111 112222223 34455555666644 45577777777
Q ss_pred HHHHHHHhhhcccCCCCCCCChHHHHHHHHHHHHHhhcchHHHHHHHhcCCCCChhhHHHHHHHHHHHHhhcCchhHHHH
Q 000730 908 LAALTLQLGSCHGLASSGQHEPLRAILTSFQAFCECVGDLEMRKILARDGEQNDKEKWINLIGDVAGCVSIKRPKEVQTI 987 (1326)
Q Consensus 908 f~aLL~ql~~~~~~~~~~~~~P~~~aleAlk~ll~~~g~~~~~~~L~~~g~W~~~e~~~~gV~lLAr~m~~~~~~~~~~i 987 (1326)
|.++|--+++.-.. + +-+ .+ ..-...+.+.+.... ..++ -..++|
T Consensus 293 l~~iLpc~s~~e~~------~----i~~-~a----~~~n~~l~~l~s~~~---~~~~-----------------id~~~i 337 (675)
T KOG0212|consen 293 LTAILPCLSDTEEM------S----IKE-YA----QMVNGLLLKLVSSER---LKEE-----------------IDYGSI 337 (675)
T ss_pred hhhcccCCCCCccc------c----HHH-HH----HHHHHHHHHHHhhhh---hccc-----------------cchHHH
Confidence 77665444221111 0 000 00 000001111111100 0000 246788
Q ss_pred HHHHhhhhccccccchHHHHHHHHHhhhcCCch-hhHHHHHHHHHHhhcCCCChhHHHHHhhhccCCcch
Q 000730 988 CLILTKSINRQQRFQREAAAAALSEFVRYSGGF-DSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI 1056 (1326)
Q Consensus 988 ~~~L~~~L~s~~~~~Ri~a~aflsELl~~~~~~-~~l~~~~i~~L~~~l~D~~~~VR~lsLrGLgnl~~~ 1056 (1326)
++-+.+++.+..+.-|+++.-.+.-+.++.++. -.-.+++..+|.+.++|++..|-.++|.=+++++..
T Consensus 338 i~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s 407 (675)
T KOG0212|consen 338 IEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSS 407 (675)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcC
Confidence 999999999999999999998888877764442 222467889999999999999999999999999865
No 81
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.73 E-value=0.67 Score=57.44 Aligned_cols=291 Identities=13% Similarity=0.058 Sum_probs=163.4
Q ss_pred CchhHHHHHHHHhhhhccccccchHHHHHHHHHhhh--cCCch-hhHHHHHHHHHHhhcCCCChhHHHHHhhhccCCcch
Q 000730 980 RPKEVQTICLILTKSINRQQRFQREAAAAALSEFVR--YSGGF-DSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI 1056 (1326)
Q Consensus 980 ~~~~~~~i~~~L~~~L~s~~~~~Ri~a~aflsELl~--~~~~~-~~l~~~~i~~L~~~l~D~~~~VR~lsLrGLgnl~~~ 1056 (1326)
.......|.-+..++++. +..+.+.|. .+-+++. ++... ...+....++=..+..+.+..+|-.++.-.++++..
T Consensus 111 ~~~s~d~I~~~~~~~lr~-e~~~~vLa~-~~~~l~~~g~~~~~~~~~i~l~~~~a~~~~~~~s~~~~~~~~~~~~~lg~~ 188 (823)
T KOG2259|consen 111 ENGSTDAISDYASLELRA-ECSDHVLAQ-YLDNLLAIGCPVCEEDIYILLLHGVAKVRSSISSTGNRLLLYCFHLPLGVS 188 (823)
T ss_pred ccCchhHHHHHHHHhhcc-cchhHHHHH-HHHHHHHhccCCCchhhHHHHHhhhHHHhhhcccccchHHHHHHhhhcccC
Confidence 344566777777777663 344443332 2223333 12211 111222334445567788889999999988888753
Q ss_pred --hhhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCcCCChHHHHHHHHHHHHhh
Q 000730 1057 --HIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALS 1134 (1326)
Q Consensus 1057 --~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~l~~~lrpffede~~~vR~aAi~LfG~L~ 1134 (1326)
.+..-.+.+..++..-..|.|..|.-.|+.||-.+-+.. .++.. +-.+......|++++||.+|+.|.--.+
T Consensus 189 ~ss~~~d~~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~---kL~~~---~Y~~A~~~lsD~~e~VR~aAvqlv~v~g 262 (823)
T KOG2259|consen 189 PSSLTHDREHAARGLIYLEHDQDFRVRTHAVEGLLALSEGF---KLSKA---CYSRAVKHLSDDYEDVRKAAVQLVSVWG 262 (823)
T ss_pred CCcccccHHHHHHHHHHHhcCCCcchHHHHHHHHHhhcccc---cccHH---HHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 343444556666777788888888877777766555411 12222 2233446788999999999988765555
Q ss_pred hcCCC-----cchHHHHHHHHhhhhHHHHhccCCChhHHHHHHHHHHhhchhhhhhhhhhhcc-----------------
Q 000730 1135 NFGVG-----SQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEIGVYGIFNS----------------- 1192 (1326)
Q Consensus 1135 ~~~~~-----~~~~~~~eQv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL~~~l~~lf~~----------------- 1192 (1326)
+.+.+ .....+++-++..+..- +.|-+-.||-.+..+|+...+...-.+.+.+.|
T Consensus 263 n~~p~~~e~e~~e~kl~D~aF~~vC~~---v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk 339 (823)
T KOG2259|consen 263 NRCPAPLERESEEEKLKDAAFSSVCRA---VRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPK 339 (823)
T ss_pred hcCCCcccchhhhhhhHHHHHHHHHHH---HhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchH
Confidence 53322 22334555555555543 468899999888888887775544333332222
Q ss_pred -----ccCCCCCCCChHHHHHHHHHHHHHhCcchHHHHHH----HHHHhhcCCChhHHHHHHHHHhhhhccCchhhhhhc
Q 000730 1193 -----HCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMG----STIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSL 1263 (1326)
Q Consensus 1193 -----~~~~~~~~l~~~~f~~~i~k~L~~~~~~~~~~~l~----~~l~y~kS~~~~IR~aA~~fiG~l~~~~~~~~~~~~ 1263 (1326)
--|..|++++.+.=-.+ ...+..++.-+ .-+.-|.+.--.+|.||+--.+.+....|.=-
T Consensus 340 ~l~s~GewSsGk~~~advpsee-------~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA---- 408 (823)
T KOG2259|consen 340 ALYSSGEWSSGKEWNADVPSEE-------DDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFA---- 408 (823)
T ss_pred HHHhcCCcccCccccccCchhh-------ccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcH----
Confidence 22333333311000000 00000000000 00112344455789999988888888776222
Q ss_pred cHHHHHHHHHHHhccCCChhHHHHHHHHHHHH
Q 000730 1264 FYTQVFGLLVVKLSQSADAIVRATCSSSLGWL 1295 (1326)
Q Consensus 1264 ~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l 1295 (1326)
+..+.-|.+ |..|+...||-.|--||..+
T Consensus 409 --~~aldfLvD-MfNDE~~~VRL~ai~aL~~I 437 (823)
T KOG2259|consen 409 --VRALDFLVD-MFNDEIEVVRLKAIFALTMI 437 (823)
T ss_pred --HHHHHHHHH-HhccHHHHHHHHHHHHHHHH
Confidence 223445777 88888889998888775544
No 82
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=94.60 E-value=1 Score=59.33 Aligned_cols=240 Identities=16% Similarity=0.168 Sum_probs=145.4
Q ss_pred hHHHHHHHHHhhhcCCchhhHHHHHHHHHHhhcCCCChhHHHHHhhhccCCc-------chhhhhhHHHHHHHHHhhccC
Q 000730 1003 REAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIP-------SIHIHQYATQVLSVILALLDD 1075 (1326)
Q Consensus 1003 Ri~a~aflsELl~~~~~~~~l~~~~i~~L~~~l~D~~~~VR~lsLrGLgnl~-------~~~v~~~~~~lL~all~~L~d 1075 (1326)
++.|.-.+.+|-..- ..+..++.++-.+.--+.|+.+.||..|+..|..+. ....+-+.++++|-+-..+.|
T Consensus 440 K~~ALeLl~~lS~~i-~de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l~~d 518 (1431)
T KOG1240|consen 440 KLAALELLQELSTYI-DDEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHLLND 518 (1431)
T ss_pred HHHHHHHHHHHhhhc-chHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhhhcc
Confidence 556665555554432 334556777777777889999999999999877542 236677889999999999988
Q ss_pred CC-hhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCc--CcCCChHHHHHHHHHHHHhhhcCCCcchHHHHHHHHhh
Q 000730 1076 LD-ESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNL--QVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAM 1152 (1326)
Q Consensus 1076 ~d-~~V~leAm~~L~~lL~~l~~~~~~~~l~~l~~~lrpf--fede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~ 1152 (1326)
.+ ..|+..=...|+.+-.. ..-++..++++|-- .++++.+ ....-.......++.+-|-+.
T Consensus 519 ~~~~~vRiayAsnla~LA~t------A~rFle~~q~~~~~g~~n~~nse----------t~~~~~~~~~~~~L~~~V~~~ 582 (1431)
T KOG1240|consen 519 SSAQIVRIAYASNLAQLAKT------AYRFLELTQELRQAGMLNDPNSE----------TAPEQNYNTELQALHHTVEQM 582 (1431)
T ss_pred CccceehhhHHhhHHHHHHH------HHHHHHHHHHHHhcccccCcccc----------cccccccchHHHHHHHHHHHH
Confidence 44 34555545555555432 23356777777654 5555554 111111123445566556666
Q ss_pred hhHHHHhccCCChhHHHHHHHHHHhhchhhhhhhhhhhccccCCCCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHHh
Q 000730 1153 LPRLILHIYDDDLSVRQACRNTLKQVAPFMEIGVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQA 1232 (1326)
Q Consensus 1153 LvpLLlHL~D~~~~V~~ack~tL~~~a~lL~~~l~~lf~~~~~~~~~~l~~~~f~~~i~k~L~~~~~~~~~~~l~~~l~y 1232 (1326)
.+.|+ .|+.+-|+++=-..+..++.|+| + .-.+ +..++..+.|
T Consensus 583 v~sLl---sd~~~~Vkr~Lle~i~~LC~FFG--------k------------------------~ksN--D~iLshLiTf 625 (1431)
T KOG1240|consen 583 VSSLL---SDSPPIVKRALLESIIPLCVFFG--------K------------------------EKSN--DVILSHLITF 625 (1431)
T ss_pred HHHHH---cCCchHHHHHHHHHHHHHHHHhh--------h------------------------cccc--cchHHHHHHH
Confidence 66665 48887887765555444444422 2 1110 1123444568
Q ss_pred hcCCChhHHHHHHHHHhhhhccCchhhhhhccHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHccc
Q 000730 1233 FEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLLKSINS 1301 (1326)
Q Consensus 1233 ~kS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k~~~~ 1301 (1326)
+++-.+.+|++=--=|-++.-....+-. .|.+..-|+. =+.|+++.|-..|-++|.-|.|..+.
T Consensus 626 LNDkDw~LR~aFfdsI~gvsi~VG~rs~----seyllPLl~Q-~ltD~EE~Viv~aL~~ls~Lik~~ll 689 (1431)
T KOG1240|consen 626 LNDKDWRLRGAFFDSIVGVSIFVGWRSV----SEYLLPLLQQ-GLTDGEEAVIVSALGSLSILIKLGLL 689 (1431)
T ss_pred hcCccHHHHHHHHhhccceEEEEeeeeH----HHHHHHHHHH-hccCcchhhHHHHHHHHHHHHHhccc
Confidence 8888888998522112111112221111 1556676777 58899999999999999999876543
No 83
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.58 E-value=28 Score=47.85 Aligned_cols=467 Identities=13% Similarity=0.081 Sum_probs=226.3
Q ss_pred HHHhccCCChhhHHHHHHHHHHHHhhhcccccccchhhHHHHHHHHHhh---cCcHHHHHHHHHHHHHHhhccCchhHHH
Q 000730 724 CTTAICDRTKQSAEGAIQAVVEFVTKRGNELSETDVSRTTQSLLSAAVH---ITDKHLRLETLGAISCLAENTNSKIVFN 800 (1326)
Q Consensus 724 ll~~L~d~~~~~~~~A~~~L~~~l~~rg~~L~e~~V~~I~~~I~~~l~~---i~~~~~r~~~l~ai~~La~~h~~~vV~~ 800 (1326)
.-..++|...++..||-.++-.++-.+ ++.+.-+|.++.. -+.-.+|+.+++.++-.....++=..+.
T Consensus 860 Vh~R~~DssasVREAaldLvGrfvl~~---------~e~~~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~ 930 (1692)
T KOG1020|consen 860 VHGRLNDSSASVREAALDLVGRFVLSI---------PELIFQYYDQIIERILDTGVSVRKRVIKILRDICEETPDFSKIV 930 (1692)
T ss_pred HHHhhccchhHHHHHHHHHHhhhhhcc---------HHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhHH
Confidence 334445555555555555554444222 2223334444332 2345678888888877766665532222
Q ss_pred HHHhhhcccchhhhhccccCCCCchhHHHHhhcCcc-cHHHHHHHHHHHHccCCCccCCCccCCCCCCCCCCCccchHHH
Q 000730 801 EVLATAGKDIVTKDISRLRGGWPMQDAFHAFSQHAV-LSFLFLEHLISALNQTPFVKGDMEKGDYSSHSADTWIDDDILQ 879 (1326)
Q Consensus 801 ~Ll~~~~~~~~~~~~~~L~~~lP~d~~W~aLa~d~~-l~~~vL~~LL~~L~~~p~~~e~~~~~~~~~~~~~~~~~~~~~l 879 (1326)
.+ |. +|-+-+..|.. .-..+.+.++..+=..++...+. +-
T Consensus 931 ~~--------ca-------------kmlrRv~DEEg~I~kLv~etf~klWF~p~~~~~d~------------------~~ 971 (1692)
T KOG1020|consen 931 DM--------CA-------------KMLRRVNDEEGNIKKLVRETFLKLWFTPVPEVNDQ------------------PA 971 (1692)
T ss_pred HH--------HH-------------HHHHHhccchhHHHHHHHHHHHHHhccCCCccccc------------------HH
Confidence 22 11 24444444444 55566666666655555443321 11
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHhhHHHHHHHHHHhhhcccCCCCCCCChHH-HHHHHHHHHHHhhcchHHHHHHHhc--
Q 000730 880 AAILALTAFFRGGGKVGKKAVEKSYAPVLAALTLQLGSCHGLASSGQHEPLR-AILTSFQAFCECVGDLEMRKILARD-- 956 (1326)
Q Consensus 880 aA~~aL~Ell~~~~~~~~~av~~~fp~Lf~aLL~ql~~~~~~~~~~~~~P~~-~aleAlk~ll~~~g~~~~~~~L~~~-- 956 (1326)
.|.-...|...+. ....+....++||+..++..-.-- ++.+...|.- ..++-.-.++...-.+++.. ++.+
T Consensus 972 ~~~kI~~~~~vv~--~~~d~~~~~~eqLl~~ilk~~~~~---~~~~~~~~v~~~~v~~~~~L~~~cl~~~i~e-v~~~~~ 1045 (1692)
T KOG1020|consen 972 KARKISLEVDVVM--SQVDLMNDWLEQLLDHILKFYLLK---TMKESVKPVALAKVTHVLNLLTHCLVEKISE-VESDDM 1045 (1692)
T ss_pred HHHhhHHHHHHHH--HHHHHhcChHHHHHHHHHHHHHhh---hhhhhhhHHHHhhcchHHHHHHHHHHHHHHh-hhhHhh
Confidence 1222222222222 233555678899998876543211 2222233421 11111111111111111111 1110
Q ss_pred CCCCChhhHHHHHHHHHHHHhhcCchhHH-HHHHHHhhhhccc----cccchHHHHHHHHHhhhc--CCchhhHHHHHHH
Q 000730 957 GEQNDKEKWINLIGDVAGCVSIKRPKEVQ-TICLILTKSINRQ----QRFQREAAAAALSEFVRY--SGGFDSLLEQMVE 1029 (1326)
Q Consensus 957 g~W~~~e~~~~gV~lLAr~m~~~~~~~~~-~i~~~L~~~L~s~----~~~~Ri~a~aflsELl~~--~~~~~~l~~~~i~ 1029 (1326)
..=++...+..-+..|+- .+.-+|..+- .=+..|.|||.+. .+.+-+-.++++-|-+=. +.-.+.+++.+=.
T Consensus 1046 ~~~~~~~~~~~~lstL~~-FskirP~Llt~khv~tL~PYL~s~~~t~~~~~fl~~vi~Ile~VlPlv~~~sesfL~sLEe 1124 (1692)
T KOG1020|consen 1046 NEEESEVRLLAYLSTLFV-FSKIRPQLLTKKHVITLQPYLTSKASTIEEAQFLYYVIQILECVLPLVANPSESFLASLEE 1124 (1692)
T ss_pred hcccchhHHHHHHHHHHH-HHhcCchhccHHHHHHhhhHHhccccchHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHH
Confidence 011145566666665553 4555665544 7788899999987 444444445554442211 0112344444444
Q ss_pred HHHhhcCCCChhHHHHHhhhccCCcchhhhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHh
Q 000730 1030 ALCRHVSDESPTVRGLCLRGLVQIPSIHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSV 1109 (1326)
Q Consensus 1030 ~L~~~l~D~~~~VR~lsLrGLgnl~~~~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~l~~ 1109 (1326)
.|+..+---+.++-.-|+--+|.++.+ .- .+-.++..-.....+.++.
T Consensus 1125 ~L~~~i~k~g~a~V~~~vsCl~sl~~k----------------~~-~~~~~v~~cf~~~~k~le~--------------- 1172 (1692)
T KOG1020|consen 1125 DLLKRIVKMGMATVVEAVSCLGSLATK----------------RT-DGAKVVKACFSCYLKLLEV--------------- 1172 (1692)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHhh----------------hc-cchHHHHHHHHHHHHHHHH---------------
Confidence 444443222222222222222222211 00 0122333333333333332
Q ss_pred hhcCcCcCC----ChHHHHHHHHHHHHhhhc-------CCCcchH----HHHHHHHhhhhHHHHhccCCChhHHHHHHHH
Q 000730 1110 RLRNLQVSM----NVKMRRNAFAAFGALSNF-------GVGSQRE----AFLEQIHAMLPRLILHIYDDDLSVRQACRNT 1174 (1326)
Q Consensus 1110 ~lrpffede----~~~vR~aAi~LfG~L~~~-------~~~~~~~----~~~eQv~~~LvpLLlHL~D~~~~V~~ack~t 1174 (1326)
+|.-++++ +...=.-++.+.|-++++ .+|+... ..++ ..+..|..|.++.+-.+++.+-.+
T Consensus 1173 -~k~s~~en~~~~~~p~l~RsiftlG~l~Ryfdf~~~~~~g~~~~~~~~~~~e---~v~~lL~~f~k~~~~~lR~~al~~ 1248 (1692)
T KOG1020|consen 1173 -IKSSNNENADIVNFPKLQRSIFTLGLLSRYFDFPKPSNDGKTFLQEGETLKE---KVLILLMYFSKDKDGELRRKALIN 1248 (1692)
T ss_pred -HHhccccccchhhhHHHHHHHHHHHHHHHhccCCCccCCCccchhhhhhHHH---HHHHHHHHHHHhhhhHHHHHHHHH
Confidence 22223333 322223467777888873 2233322 3333 356677888899999999988888
Q ss_pred HHhhch----hhhh-hhhhhhccccCCCC---C-----------------------------------------CCChHH
Q 000730 1175 LKQVAP----FMEI-GVYGIFNSHCFNSD---H-----------------------------------------RSDYET 1205 (1326)
Q Consensus 1175 L~~~a~----lL~~-~l~~lf~~~~~~~~---~-----------------------------------------~l~~~~ 1205 (1326)
|+..+. ++-. .+..++.+- +.++ . ..+-+.
T Consensus 1249 Lg~~ci~hp~l~~~~~v~nly~~i-la~~n~~~~~ki~~l~n~~~yL~eee~~l~~~~~~w~~~~k~edlkem~~v~sg~ 1327 (1692)
T KOG1020|consen 1249 LGFICIQHPSLFTSREVLNLYDEI-LADDNSDIKSKIQLLQNLELYLLEEEKKLRNKGKNWTKSNKSEDLKEMLDVSSGM 1327 (1692)
T ss_pred HHHHHhhCchhhhhHHHHHHHHHH-HhhhcccHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhccccccc
Confidence 887662 2222 333222221 1111 0 011122
Q ss_pred HHHHHHHHHHHhCcchHHHHHHHHHHhhcCCChhHHHHHHHHHhhhhccCchhhhhhccHHHHHHHHHHHhccCCChhHH
Q 000730 1206 FVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVR 1285 (1326)
Q Consensus 1206 f~~~i~k~L~~~~~~~~~~~l~~~l~y~kS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR 1285 (1326)
+.++.|.. .++.|+.+.+.-+=+-+..+|.+|+..+-.+++..= +..-.-+..|+. |-.||.+..|
T Consensus 1328 ~s~~~~~~-------i~Qlfl~~ILe~cl~~d~~~r~~aikvl~liL~QGL------VhP~~cvPtLIA-L~Tdp~~~~r 1393 (1692)
T KOG1020|consen 1328 GSSDGVSA-------IMQLFLDNILESCLDRDLQVRLVAIKVLKLILNQGL------VHPVHCVPTLIA-LETDPSQAIR 1393 (1692)
T ss_pred ccccchHH-------HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHccC------CCccchhhhhee-ecCChHHHHH
Confidence 22222222 456688888887777888999999999988776432 222334667888 8889999999
Q ss_pred HHHHHHHHHHH
Q 000730 1286 ATCSSSLGWLL 1296 (1326)
Q Consensus 1286 ~~Aa~aL~~l~ 1296 (1326)
..|-+-|..+.
T Consensus 1394 ~~Ad~LL~eid 1404 (1692)
T KOG1020|consen 1394 HVADELLKEID 1404 (1692)
T ss_pred HHHHHHHHHHH
Confidence 98888877776
No 84
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=94.50 E-value=0.54 Score=56.33 Aligned_cols=193 Identities=15% Similarity=0.134 Sum_probs=137.1
Q ss_pred CChhhHHHHHHHHHHHHhhcCc----hhHHHHHHHHhhhhcc-ccccchHHHHHHHHHhhhcCCch-hhHHHHHHHHHHh
Q 000730 960 NDKEKWINLIGDVAGCVSIKRP----KEVQTICLILTKSINR-QQRFQREAAAAALSEFVRYSGGF-DSLLEQMVEALCR 1033 (1326)
Q Consensus 960 ~~~e~~~~gV~lLAr~m~~~~~----~~~~~i~~~L~~~L~s-~~~~~Ri~a~aflsELl~~~~~~-~~l~~~~i~~L~~ 1033 (1326)
+..+..-.|...|-..++.... ++...|+..++-.|.. .++..|..|.-.+.|.+.++... ..--+-++...++
T Consensus 299 e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Le 378 (516)
T KOG2956|consen 299 ERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLE 378 (516)
T ss_pred cchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHH
Confidence 4445556777777777777632 3588999999999988 77888999999999999876431 1112335566667
Q ss_pred hcCCCChhHHHHHhhhcc-CCcchhhhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhc
Q 000730 1034 HVSDESPTVRGLCLRGLV-QIPSIHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLR 1112 (1326)
Q Consensus 1034 ~l~D~~~~VR~lsLrGLg-nl~~~~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~l~~~lr 1112 (1326)
..+|+.+.|-..|-.... -++.+.--.-...+-+.++. .|++....++..+.++.+.++.+.+..++..|+.-+-
T Consensus 379 aa~ds~~~v~~~Aeed~~~~las~~P~~~I~~i~~~Ilt----~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~i 454 (516)
T KOG2956|consen 379 AAKDSQDEVMRVAEEDCLTTLASHLPLQCIVNISPLILT----ADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVI 454 (516)
T ss_pred HHhCCchhHHHHHHHHHHHHHHhhCchhHHHHHhhHHhc----CcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHH
Confidence 778887766655555433 22222111111222333333 5788999999999999999999999999999999998
Q ss_pred CcCcCCChHHHHHHHHHHHHhhhcCCCcchHHHHHHHHhhhhHH
Q 000730 1113 NLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRL 1156 (1326)
Q Consensus 1113 pffede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~LvpL 1156 (1326)
.-|+..+..||.+|+.-+=++.+..++...++-.+|+-.+-.-|
T Consensus 455 qay~S~SS~VRKtaVfCLVamv~~vG~~~mePhL~~Lt~sk~~L 498 (516)
T KOG2956|consen 455 QAYDSTSSTVRKTAVFCLVAMVNRVGMEEMEPHLEQLTSSKLNL 498 (516)
T ss_pred HHhcCchHHhhhhHHHhHHHHHHHHhHHhhhhHhhhccHHHHHH
Confidence 99999999999999999888888665566667666655544443
No 85
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.47 E-value=2.9 Score=52.37 Aligned_cols=139 Identities=17% Similarity=0.263 Sum_probs=101.2
Q ss_pred hhhhccccccchHHHHHHHHHhhhcCCchhhHHHHHHHHHHhhcCCCChhHHHHHhhhccCCcchhhhh-hHHHHHHHHH
Q 000730 992 TKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSIHIHQ-YATQVLSVIL 1070 (1326)
Q Consensus 992 ~~~L~s~~~~~Ri~a~aflsELl~~~~~~~~l~~~~i~~L~~~l~D~~~~VR~lsLrGLgnl~~~~v~~-~~~~lL~all 1070 (1326)
..+|+|+.-..+.++-.|++=|++.. ..+.+-+++.+.+-+...||+.-.+||.-+||++...+.. |..-+=.-++
T Consensus 80 V~LLss~kysEKqIGYl~is~L~n~n---~dl~klvin~iknDL~srn~~fv~LAL~~I~niG~re~~ea~~~DI~KlLv 156 (938)
T KOG1077|consen 80 VNLLSSNKYSEKQIGYLFISLLLNEN---SDLMKLVINSIKNDLSSRNPTFVCLALHCIANIGSREMAEAFADDIPKLLV 156 (938)
T ss_pred HHHhhcCCccHHHHhHHHHHHHHhcc---hHHHHHHHHHHHhhhhcCCcHHHHHHHHHHHhhccHhHHHHhhhhhHHHHh
Confidence 46777888888888888888888865 4566777888999999999999999999999999864432 2222222223
Q ss_pred hhccCCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCcCCChHHHHHHHHHHHHhhhcCC
Q 000730 1071 ALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGV 1138 (1326)
Q Consensus 1071 ~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~l~~~lrpffede~~~vR~aAi~LfG~L~~~~~ 1138 (1326)
+| +..+-|.-.|..+|-+++..-+ +-+.+- .-+.|+-.+++|..-.|=.+|+.+.-.+++.-.
T Consensus 157 S~--~~~~~vkqkaALclL~L~r~sp-Dl~~~~--~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p 219 (938)
T KOG1077|consen 157 SG--SSMDYVKQKAALCLLRLFRKSP-DLVNPG--EWAQRIVHLLDDQHMGVVTAATSLIEALVKKNP 219 (938)
T ss_pred CC--cchHHHHHHHHHHHHHHHhcCc-cccChh--hHHHHHHHHhCccccceeeehHHHHHHHHHcCC
Confidence 33 1124488889999999998743 222221 346777889999999999999999999988433
No 86
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=94.23 E-value=25 Score=45.89 Aligned_cols=60 Identities=10% Similarity=0.127 Sum_probs=53.1
Q ss_pred HHHHHHHHHHhhhcccccccchhhHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccCchhH
Q 000730 738 GAIQAVVEFVTKRGNELSETDVSRTTQSLLSAAVHITDKHLRLETLGAISCLAENTNSKIV 798 (1326)
Q Consensus 738 ~A~~~L~~~l~~rg~~L~e~~V~~I~~~I~~~l~~i~~~~~r~~~l~ai~~La~~h~~~vV 798 (1326)
-++-++.+++.+-|.++.+. +..|++.+..+|.......+.+.++-+..-|....++.++
T Consensus 728 ~VG~lV~tLit~a~~el~~n-~d~IL~Avisrmq~ae~lsviQsLi~VfahL~~t~~~~~l 787 (1005)
T KOG2274|consen 728 FVGPLVLTLITHASSELGPN-LDQILRAVISRLQQAETLSVIQSLIMVFAHLVHTDLDQLL 787 (1005)
T ss_pred HHhHHHHHHHHHHHHHhchh-HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhCCHHHHH
Confidence 45668999999999999666 9999999999999999999999999999999888888776
No 87
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.05 E-value=5.5 Score=52.01 Aligned_cols=313 Identities=15% Similarity=0.167 Sum_probs=182.6
Q ss_pred hhHHHHHHHHHHHHhhcCc--hhHH-HHHHHHhhhhccccccchHHHHHHHHHhhhcCCchhhHHHHHHHHHHhhcC-CC
Q 000730 963 EKWINLIGDVAGCVSIKRP--KEVQ-TICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVS-DE 1038 (1326)
Q Consensus 963 e~~~~gV~lLAr~m~~~~~--~~~~-~i~~~L~~~L~s~~~~~Ri~a~aflsELl~~~~~~~~l~~~~i~~L~~~l~-D~ 1038 (1326)
++-..-|+-|++-+.+..+ .++. =++.++.|.++|++.--|.-|+.+++.+-.--......+..++..-.+.+. |+
T Consensus 436 dGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d~~~l~~ale~t~~~l~~d~ 515 (1010)
T KOG1991|consen 436 DGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQFSSIDFKDPNNLSEALELTHNCLLNDN 515 (1010)
T ss_pred hhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhccCC
Confidence 4445566777777766655 2332 466788999999999999999999998864322222333334444444444 88
Q ss_pred ChhHHHHHhhhccCCcc------hhhhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhc
Q 000730 1039 SPTVRGLCLRGLVQIPS------IHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLR 1112 (1326)
Q Consensus 1039 ~~~VR~lsLrGLgnl~~------~~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~l~~~lr 1112 (1326)
+.-||.=|.-||-..-. .+++.+.+.++..++....+.+.++.-..|.. ++..-+ +.+.|+-+.+|..|.
T Consensus 516 ~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End~Lt~vme~---iV~~fs-eElsPfA~eL~q~La 591 (1010)
T KOG1991|consen 516 ELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVENDDLTNVMEK---IVCKFS-EELSPFAVELCQNLA 591 (1010)
T ss_pred cCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchhHHHHHHHH---HHHHHH-HhhchhHHHHHHHHH
Confidence 99999988888775532 26888999999999998887765554444433 333322 346788888888885
Q ss_pred CcC-------cCCChHHHHHHHHHHHHhhhc----CCCcchHHHHHHHHhhhhHHHHhccCCChh-HHHH-HHHH-----
Q 000730 1113 NLQ-------VSMNVKMRRNAFAAFGALSNF----GVGSQREAFLEQIHAMLPRLILHIYDDDLS-VRQA-CRNT----- 1174 (1326)
Q Consensus 1113 pff-------ede~~~vR~aAi~LfG~L~~~----~~~~~~~~~~eQv~~~LvpLLlHL~D~~~~-V~~a-ck~t----- 1174 (1326)
.-| +++.+..-..|+.+-|=|... ..-.....+..|+...+.|.+-|..+.+.. +-+. +..+
T Consensus 592 ~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~le~~~l~vi~~iL~~~i~dfyeE~~ei~~~~t~ 671 (1010)
T KOG1991|consen 592 ETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLKQLEPIVLPVIGFILKNDITDFYEELLEIVSSLTF 671 (1010)
T ss_pred HHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhh
Confidence 443 334444455566665655431 112234447888999999999998877653 3332 2221
Q ss_pred -HHhhchhhhh----hhhhhhccccCCCCCCCCh-HHHHHHHHHHH------HHhCcchHHHHHHHHHHhhcCC---Chh
Q 000730 1175 -LKQVAPFMEI----GVYGIFNSHCFNSDHRSDY-ETFVRDLTRQF------VQHFPSRIDSYMGSTIQAFEAP---WPI 1239 (1326)
Q Consensus 1175 -L~~~a~lL~~----~l~~lf~~~~~~~~~~l~~-~~f~~~i~k~L------~~~~~~~~~~~l~~~l~y~kS~---~~~ 1239 (1326)
...++|- =| .+-++|++. +.+| .+++-.+-.+. ..++|+.......-+-.-+-|. ..+
T Consensus 672 ~~~~Isp~-mW~ll~li~e~~~~~------~~dyf~d~~~~l~N~vt~g~~~~~s~~~y~~il~~i~~~~l~~e~~~D~d 744 (1010)
T KOG1991|consen 672 LSKEISPI-MWGLLELILEVFQDD------GIDYFTDMMPALHNYVTYGTPSLLSNPDYLQILLEIIKKVLTSENGEDSD 744 (1010)
T ss_pred hhcccCHH-HHHHHHHHHHHHhhh------hHHHHHHHHHHHhhheeeCchhhhccchHHHHHHHHHHHHHcCCCCchHH
Confidence 1223332 23 224455442 2333 22322222121 3456666666655555555552 233
Q ss_pred HHHHHHHHHhhhhccCchhhhhhccHHH-HHHHHHHHhcc-CCChhHHHHHHH
Q 000730 1240 IQANAIYFSSSILCLCDDQHILSLFYTQ-VFGLLVVKLSQ-SADAIVRATCSS 1290 (1326)
Q Consensus 1240 IR~aA~~fiG~l~~~~~~~~~~~~~~e~-l~~~L~~~Ll~-Dpdp~VR~~Aa~ 1290 (1326)
++ .|+.+++.++.+... ...+ ..+- +--++.. +++ +.+...|..+-+
T Consensus 745 ~~-~a~kLle~iiL~~kg-~~dq-~iplf~~~a~~~-l~~~~e~s~~~~~~le 793 (1010)
T KOG1991|consen 745 CE-SACKLLEVIILNCKG-LLDQ-YIPLFLELALSR-LTREVETSELRVMLLE 793 (1010)
T ss_pred HH-HHHHHHHHHHHHhcC-cHhh-HhHHHHHHHHHH-HhccccchHHHHHHHH
Confidence 44 488899988777664 2211 1122 2223444 444 688888876543
No 88
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=94.04 E-value=20 Score=44.02 Aligned_cols=325 Identities=18% Similarity=0.147 Sum_probs=184.6
Q ss_pred HHhhcCcccHHHHHHHHHHHHccCCCccCCCccCCCCCCCCCCCccchHHHHHHHHHHHHHhcCCcch-HHHHHHhhHHH
Q 000730 829 HAFSQHAVLSFLFLEHLISALNQTPFVKGDMEKGDYSSHSADTWIDDDILQAAILALTAFFRGGGKVG-KKAVEKSYAPV 907 (1326)
Q Consensus 829 ~aLa~d~~l~~~vL~~LL~~L~~~p~~~e~~~~~~~~~~~~~~~~~~~~~laA~~aL~Ell~~~~~~~-~~av~~~fp~L 907 (1326)
-+++.++.+...+...|+.+|......+. ....+.++..+|+.++....... .....++|.+.
T Consensus 27 ~~ls~~~~i~~~~~~~ll~kl~~~~~~~~----------------~~~~~~~il~tl~~~~~~~~~~~~~~~~~~y~~~~ 90 (415)
T PF12460_consen 27 AALSTSPQILETLSIRLLNKLSIVCQSES----------------SSDYCHAILSTLQSLLEKKQEDKQFEDNSWYFHRI 90 (415)
T ss_pred HHHHCChhHHHHHHHHHHHHHHHHhcCCC----------------ChHHHHHHHHHHHHHHHhcccccccchHHHHHHhH
Confidence 34456888888888888888876543211 01346788899999988763222 23566666665
Q ss_pred HHHHHHHhhhcccCCCCCCCCh-----HHHHHHHHHHHHHhhcchHHHHHHHh-------cCCCC-----ChhhHHHHHH
Q 000730 908 LAALTLQLGSCHGLASSGQHEP-----LRAILTSFQAFCECVGDLEMRKILAR-------DGEQN-----DKEKWINLIG 970 (1326)
Q Consensus 908 f~aLL~ql~~~~~~~~~~~~~P-----~~~aleAlk~ll~~~g~~~~~~~L~~-------~g~W~-----~~e~~~~gV~ 970 (1326)
+.-.+......-.....+ .++ .+..+...-..+......++.+.+-. ...+. ..+.-..-|.
T Consensus 91 lv~~l~~~~~~~~~~~~~-~~~~~L~~~~~l~~~iv~~l~~~~q~~~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (415)
T PF12460_consen 91 LVPRLFELALQASDQSSD-LDDRVLELLSRLINLIVRSLSPEKQQEILDELYSLFLSPKSFSPFQPSSSTISEQQSRLVI 169 (415)
T ss_pred HHHHHHHHHHhhcccccc-cchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccccccCCCCccccccccccccHHH
Confidence 554444443322211111 111 11111111111111222222211110 01111 1122334455
Q ss_pred HHHHHHhhcCc----hhHHHHHHHHhhhhccc-cccchHHHHHHHHHhhhcCCchhhHHHHHHHHHHhhc-CCCChhHHH
Q 000730 971 DVAGCVSIKRP----KEVQTICLILTKSINRQ-QRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHV-SDESPTVRG 1044 (1326)
Q Consensus 971 lLAr~m~~~~~----~~~~~i~~~L~~~L~s~-~~~~Ri~a~aflsELl~~~~~~~~l~~~~i~~L~~~l-~D~~~~VR~ 1044 (1326)
+.+..++.-++ +....++..+.....+. .+..|..+.-.++-++|...... .++..++.+.... ...++.-|.
T Consensus 170 l~~~il~~l~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~-~l~~~l~~~~~~~~~~~~~~~~~ 248 (415)
T PF12460_consen 170 LFSAILCSLRKDVSLPDLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDD-DLDEFLDSLLQSISSSEDSELRP 248 (415)
T ss_pred HHHHHHHcCCcccCccCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChh-hHHHHHHHHHhhhcccCCcchhH
Confidence 45555443221 35566777777775554 47779999999999999843322 3445555555555 667788888
Q ss_pred HHhhhccCCcch---hhhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhccCCc-------CCcc-----hhHHhHHh
Q 000730 1045 LCLRGLVQIPSI---HIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSK-------DAVE-----PILLNLSV 1109 (1326)
Q Consensus 1045 lsLrGLgnl~~~---~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~-------~~~~-----~~l~~l~~ 1109 (1326)
-+++.++++..+ +.++....+++.++..|++ +.+-..|..+++-++...+. ..++ .++..+..
T Consensus 249 ~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p 326 (415)
T PF12460_consen 249 QALEILIWITKALVMRGHPLATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLP 326 (415)
T ss_pred HHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHH
Confidence 888988888766 4456677788889998886 55666666666666654211 1122 23445555
Q ss_pred hhcCcCcCCChHHHHHHHHHHHHhhhcCCCcchHHHHHHHHhhhhHHHHhccC-CChhHHHHHHHHHHh
Q 000730 1110 RLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYD-DDLSVRQACRNTLKQ 1177 (1326)
Q Consensus 1110 ~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~LvpLLlHL~D-~~~~V~~ack~tL~~ 1177 (1326)
++-..|.+-+++.|..-..++..+.+... +..+..++- .+.||++.-=| +|++|+.++=.||..
T Consensus 327 ~L~~~~~~~~~~~k~~yL~ALs~ll~~vP---~~vl~~~l~-~LlPLLlqsL~~~~~~v~~s~L~tL~~ 391 (415)
T PF12460_consen 327 KLLEGFKEADDEIKSNYLTALSHLLKNVP---KSVLLPELP-TLLPLLLQSLSLPDADVLLSSLETLKM 391 (415)
T ss_pred HHHHHHhhcChhhHHHHHHHHHHHHhhCC---HHHHHHHHH-HHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 56666777777788888999999998543 455555554 46666665444 466677766555544
No 89
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=93.96 E-value=1.8 Score=52.09 Aligned_cols=184 Identities=16% Similarity=0.156 Sum_probs=122.6
Q ss_pred cccchHHHHHHHHHhhhc--CCchhhHHHHHHHHHHhhcCC-CChhHHHHHhhhccCCcch---hhhhhHHHHHHHHHhh
Q 000730 999 QRFQREAAAAALSEFVRY--SGGFDSLLEQMVEALCRHVSD-ESPTVRGLCLRGLVQIPSI---HIHQYATQVLSVILAL 1072 (1326)
Q Consensus 999 ~~~~Ri~a~aflsELl~~--~~~~~~l~~~~i~~L~~~l~D-~~~~VR~lsLrGLgnl~~~---~v~~~~~~lL~all~~ 1072 (1326)
...+|--|..=+-+++.. ..+++.-...++..+.+-+.| .++..|++|||-|+.|..+ +...+....+...+..
T Consensus 300 ~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Lea 379 (516)
T KOG2956|consen 300 RASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEA 379 (516)
T ss_pred chhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHH
Confidence 344455555544444442 234555556677788888899 8999999999999998755 4455666667777777
Q ss_pred ccCCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCcCCChHHHHHHHHHHHHhhhcCCCcchHHHHHHHHhh
Q 000730 1073 LDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAM 1152 (1326)
Q Consensus 1073 L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~l~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~ 1152 (1326)
=.|.++.|.-.|-....+++....+. .-+.+|+..|.. +++..=.+++...-.+.. +-..+.+..+|-..
T Consensus 380 a~ds~~~v~~~Aeed~~~~las~~P~---~~I~~i~~~Ilt----~D~~~~~~~iKm~Tkl~e---~l~~EeL~~ll~di 449 (516)
T KOG2956|consen 380 AKDSQDEVMRVAEEDCLTTLASHLPL---QCIVNISPLILT----ADEPRAVAVIKMLTKLFE---RLSAEELLNLLPDI 449 (516)
T ss_pred HhCCchhHHHHHHHHHHHHHHhhCch---hHHHHHhhHHhc----CcchHHHHHHHHHHHHHh---hcCHHHHHHhhhhh
Confidence 77778889999999888888765432 233445444444 444444556645444443 33456666666666
Q ss_pred hhHHHHhccCCChhHHHHHHHHHHhhchhhhh-hhhhhhcc
Q 000730 1153 LPRLILHIYDDDLSVRQACRNTLKQVAPFMEI-GVYGIFNS 1192 (1326)
Q Consensus 1153 LvpLLlHL~D~~~~V~~ack~tL~~~a~lL~~-~l~~lf~~ 1192 (1326)
.+.++---.-....|||+|-|.|-....-+|. .+.--+..
T Consensus 450 aP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~~mePhL~~ 490 (516)
T KOG2956|consen 450 APCVIQAYDSTSSTVRKTAVFCLVAMVNRVGMEEMEPHLEQ 490 (516)
T ss_pred hhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHHhhhhHhhh
Confidence 66666666666889999999999988888886 55444443
No 90
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.58 E-value=4.5 Score=51.26 Aligned_cols=123 Identities=20% Similarity=0.243 Sum_probs=66.7
Q ss_pred hhHHHHHHHHHHHHhhcC--chhHHHHHHHHhhhhccccccchHHHHHHHHHhhhcCCchhhHHHHHH---HHHHhhcCC
Q 000730 963 EKWINLIGDVAGCVSIKR--PKEVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMV---EALCRHVSD 1037 (1326)
Q Consensus 963 e~~~~gV~lLAr~m~~~~--~~~~~~i~~~L~~~L~s~~~~~Ri~a~aflsELl~~~~~~~~l~~~~i---~~L~~~l~D 1037 (1326)
+.-++|.-.+-.-|..+. |..+-.|..+.+|. ...+-.|+ .-+|-|++..-.....+++.++ +...+-+++
T Consensus 35 ~~KIeamK~ii~~mlnGe~~p~Llm~IiRfvlps--~~~elKKL--ly~ywE~vPKt~~dgkl~~EMILvcna~RkDLQH 110 (948)
T KOG1058|consen 35 EVKIEAMKKIIALMLNGEDLPSLLMTIIRFVLPS--RNHELKKL--LYYYWELVPKTDSDGKLLHEMILVCNAYRKDLQH 110 (948)
T ss_pred HHHHHHHHHHHHHHHcCCCchHHHHHHhheeecc--CchHHHHH--HHHHHHHccccCCCcccHHHHHHHHHHHhhhccC
Confidence 444555555555554432 22333344444444 22233333 3467788876544344444433 778888999
Q ss_pred CChhHHHHHhhhccCCcchhhhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHh
Q 000730 1038 ESPTVRGLCLRGLVQIPSIHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTIL 1092 (1326)
Q Consensus 1038 ~~~~VR~lsLrGLgnl~~~~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL 1092 (1326)
||.-||.--+|=|..+-.. .+...+.|++.+.|+....-|+--|+.++..|.
T Consensus 111 PNEyiRG~TLRFLckLkE~---ELlepl~p~IracleHrhsYVRrNAilaifsIy 162 (948)
T KOG1058|consen 111 PNEYIRGSTLRFLCKLKEP---ELLEPLMPSIRACLEHRHSYVRRNAILAIFSIY 162 (948)
T ss_pred chHhhcchhhhhhhhcCcH---HHhhhhHHHHHHHHhCcchhhhhhhheeehhHH
Confidence 9999999999977766542 123444555555555444444444444444443
No 91
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=93.44 E-value=0.66 Score=53.30 Aligned_cols=295 Identities=17% Similarity=0.128 Sum_probs=152.4
Q ss_pred hhhHHHHHHHHHHHHhhc-CchhHHH-----HHHHHhhhh-ccccccchHHHHHHHHHhhhcCC-chhhHHHH-HHHHHH
Q 000730 962 KEKWINLIGDVAGCVSIK-RPKEVQT-----ICLILTKSI-NRQQRFQREAAAAALSEFVRYSG-GFDSLLEQ-MVEALC 1032 (1326)
Q Consensus 962 ~e~~~~gV~lLAr~m~~~-~~~~~~~-----i~~~L~~~L-~s~~~~~Ri~a~aflsELl~~~~-~~~~l~~~-~i~~L~ 1032 (1326)
.+.-++||...-+.+++- +|| +.+ ++-.++.+| +...+.-..-|++.++..-.-.. -...+++. .+-.+.
T Consensus 85 ie~q~qav~kFR~~LS~E~~PP-Iq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfi 163 (526)
T COG5064 85 IEQQLQAVYKFRKLLSKETSPP-IQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFI 163 (526)
T ss_pred HHHHHHHHHHHHHHhccccCCC-chhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHH
Confidence 344455555555555443 333 222 223344444 33444445677778777544211 12222222 455677
Q ss_pred hhcCCCChhHHHHHhhhccCCcch--hhhhhH--HHHHHHHHhhccC-------------------------CChhHHHH
Q 000730 1033 RHVSDESPTVRGLCLRGLVQIPSI--HIHQYA--TQVLSVILALLDD-------------------------LDESVQLT 1083 (1326)
Q Consensus 1033 ~~l~D~~~~VR~lsLrGLgnl~~~--~v~~~~--~~lL~all~~L~d-------------------------~d~~V~le 1083 (1326)
+-+.+++..||.-++=+|||++-. ..+-|. ..+|+.++..|.. +|...+-.
T Consensus 164 qlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isq 243 (526)
T COG5064 164 QLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQ 243 (526)
T ss_pred HHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHH
Confidence 778999999999999999999732 111111 1111112211111 11224555
Q ss_pred HHHHHHHHhccCCcCCcchh-------------------HHhHHhhhcCcCcCCChHHHHHHHHHHHHhhhcCCCcchHH
Q 000730 1084 AVSCLLTILKSSSKDAVEPI-------------------LLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREA 1144 (1326)
Q Consensus 1084 Am~~L~~lL~~l~~~~~~~~-------------------l~~l~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~~~ 1144 (1326)
|+..|.|++...+.+.+..- =..+.-||--++.+|+..|..-|++.-|.+.. |.+
T Consensus 244 alpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVT---G~D--- 317 (526)
T COG5064 244 ALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVT---GSD--- 317 (526)
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeee---cCc---
Confidence 55555555555444332211 12334566678889999999999999998876 332
Q ss_pred HHHH------HHhhhhHHHHhccCCChhHHHHHHHHHHhhchhhhhhhhhhhccccCCCCCCCChHHHHHHHHHHHHHhC
Q 000730 1145 FLEQ------IHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEIGVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHF 1218 (1326)
Q Consensus 1145 ~~eQ------v~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL~~~l~~lf~~~~~~~~~~l~~~~f~~~i~k~L~~~~ 1218 (1326)
...| ++..+.|||-| +-..+++.+-.|+-.+..==--..+++...+. .
T Consensus 318 ~QTqviI~~G~L~a~~~lLs~---~ke~irKEaCWTiSNITAGnteqiqavid~nl----------------i------- 371 (526)
T COG5064 318 DQTQVIINCGALKAFRSLLSS---PKENIRKEACWTISNITAGNTEQIQAVIDANL----------------I------- 371 (526)
T ss_pred cceehheecccHHHHHHHhcC---hhhhhhhhhheeecccccCCHHHHHHHHhccc----------------c-------
Confidence 1223 34566666554 44478876655554433200002222222110 0
Q ss_pred cchHHHHHHHHHHhhcCCChhHHHHHHHHHhhhhc---cCchhhhhhccHHHHHHHHHHHhccCCChhHHHHHHHHHHHH
Q 000730 1219 PSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILC---LCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWL 1295 (1326)
Q Consensus 1219 ~~~~~~~l~~~l~y~kS~~~~IR~aA~~fiG~l~~---~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l 1295 (1326)
|- -..+.+ +-.-.||..|+|-|.-... ..| +.+..+=....++.|-. |+.=.|-.|-..|-.++..+
T Consensus 372 Pp--Li~lls------~ae~k~kKEACWAisNatsgg~~~P-D~iryLv~qG~IkpLc~-~L~~~dNkiiev~LD~~eni 441 (526)
T COG5064 372 PP--LIHLLS------SAEYKIKKEACWAISNATSGGLNRP-DIIRYLVSQGFIKPLCD-LLDVVDNKIIEVALDAIENI 441 (526)
T ss_pred hH--HHHHHH------HHHHHHHHHHHHHHHhhhccccCCc-hHHHHHHHccchhHHHH-HHhccCccchhhhHHHHHHH
Confidence 11 111222 2233488889998874432 333 33434323346667777 66656666666777777777
Q ss_pred HHHc
Q 000730 1296 LKSI 1299 (1326)
Q Consensus 1296 ~k~~ 1299 (1326)
.|.-
T Consensus 442 Lk~G 445 (526)
T COG5064 442 LKVG 445 (526)
T ss_pred Hhhh
Confidence 7654
No 92
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.11 E-value=1.1 Score=57.35 Aligned_cols=169 Identities=11% Similarity=0.116 Sum_probs=107.5
Q ss_pred HHHHHHHHHHHhh-cCch--hHHHHHHHHhhhhccccccchHHHHHHHHHhhhcCCchhhHHHHHHHHHHhhcCCCChhH
Q 000730 966 INLIGDVAGCVSI-KRPK--EVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTV 1042 (1326)
Q Consensus 966 ~~gV~lLAr~m~~-~~~~--~~~~i~~~L~~~L~s~~~~~Ri~a~aflsELl~~~~~~~~l~~~~i~~L~~~l~D~~~~V 1042 (1326)
-.|++.|++-+-+ ++++ .-.+|+...+.+|+..+..-..-|+--++-|-.-- .+..++.+.+.-.+.-+.+-+..
T Consensus 745 ~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy--~e~il~dL~e~Y~s~k~k~~~d~ 822 (982)
T KOG4653|consen 745 GYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVY--PEDILPDLSEEYLSEKKKLQTDY 822 (982)
T ss_pred HHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhc--chhhHHHHHHHHHhcccCCCccc
Confidence 3456666665432 2333 23477788888888887777777777666653321 12222222222222222222333
Q ss_pred HHHHhhhccCCcch---hhhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCc-CcCC
Q 000730 1043 RGLCLRGLVQIPSI---HIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNL-QVSM 1118 (1326)
Q Consensus 1043 R~lsLrGLgnl~~~---~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~l~~~lrpf-fede 1118 (1326)
|...=.+++++... -+.+|...++..+|+|.+|+|..-++.++..|+.+...+..+ ++.++..++..|-.. -.|.
T Consensus 823 ~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~-vsd~~~ev~~~Il~l~~~d~ 901 (982)
T KOG4653|consen 823 RLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQ-VSDFFHEVLQLILSLETTDG 901 (982)
T ss_pred eehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHccCC
Confidence 33332555555432 346788899999999999998889999999999999887644 444666665555211 1288
Q ss_pred ChHHHHHHHHHHHHhhhcC
Q 000730 1119 NVKMRRNAFAAFGALSNFG 1137 (1326)
Q Consensus 1119 ~~~vR~aAi~LfG~L~~~~ 1137 (1326)
+..||.||+.+..++.+..
T Consensus 902 s~~vRRaAv~li~~lL~~t 920 (982)
T KOG4653|consen 902 SVLVRRAAVHLLAELLNGT 920 (982)
T ss_pred chhhHHHHHHHHHHHHhcc
Confidence 8999999999999999843
No 93
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=93.02 E-value=0.82 Score=59.67 Aligned_cols=192 Identities=17% Similarity=0.170 Sum_probs=134.2
Q ss_pred HhhhhccccccchHHHHHHHHHhhhcCCc--hhhHHHHHHHHHHhhcCCCChhHHHHHhhhccCCcch---hhhhhHHHH
Q 000730 991 LTKSINRQQRFQREAAAAALSEFVRYSGG--FDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI---HIHQYATQV 1065 (1326)
Q Consensus 991 L~~~L~s~~~~~Ri~a~aflsELl~~~~~--~~~l~~~~i~~L~~~l~D~~~~VR~lsLrGLgnl~~~---~v~~~~~~l 1065 (1326)
+..-+.|+.=..|.-|+.-+...+..+.. ..-...-+.-.+.-.+.|.|-.|-..++.-|.-|+.. ....|...+
T Consensus 258 l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~~v 337 (815)
T KOG1820|consen 258 LETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYAKNV 337 (815)
T ss_pred HHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHHHhh
Confidence 33444455555566666555555554431 0011111223455567999999999999988877643 578899999
Q ss_pred HHHHHhhccCCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCcCCChHHHHHHHHHHHHhhhcCCCcchHHH
Q 000730 1066 LSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAF 1145 (1326)
Q Consensus 1066 L~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~l~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~~~~ 1145 (1326)
.+++++.+.|.-..++-.+..++-.+++.-. +. .+...|--+..+-++.+|.--..+|+...+.-+. +-.+
T Consensus 338 ~p~lld~lkekk~~l~d~l~~~~d~~~ns~~---l~----~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~--~~~~ 408 (815)
T KOG1820|consen 338 FPSLLDRLKEKKSELRDALLKALDAILNSTP---LS----KMSEAILEALKGKNPQIKGECLLLLDRKLRKLGP--KTVE 408 (815)
T ss_pred cchHHHHhhhccHHHHHHHHHHHHHHHhccc---HH----HHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCC--cCcc
Confidence 9999999999877777666677777766322 22 2333334477889999999999999998874332 4567
Q ss_pred HHHHHhhhhHHHHhccCCChhHHHHHHHHHHhhchhhhh-hhhhhhc
Q 000730 1146 LEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEI-GVYGIFN 1191 (1326)
Q Consensus 1146 ~eQv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL~~-~l~~lf~ 1191 (1326)
++-++....-++-|.+|-+++||+|+..++..+-..+|- .+..++.
T Consensus 409 ~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~~~~k~L~ 455 (815)
T KOG1820|consen 409 KETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEEVFKKLLK 455 (815)
T ss_pred hhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 788899999999999999999999999999888877776 4444443
No 94
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=92.87 E-value=3.2 Score=54.35 Aligned_cols=185 Identities=14% Similarity=0.144 Sum_probs=132.5
Q ss_pred hhccCCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCcCCChHHHHHHHHHHHHhhhcCCCcchHHHHHHHH
Q 000730 1071 ALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIH 1150 (1326)
Q Consensus 1071 ~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~l~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~ 1150 (1326)
..+.+++=.-+.||+.+|..++..-.........--++.-++.-+-|.|-.|-..|...++.+++ ..+..|+..+.
T Consensus 260 t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~----~lr~~~~~~~~ 335 (815)
T KOG1820|consen 260 TEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAK----KLRPLFRKYAK 335 (815)
T ss_pred HhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHH----hcchhhHHHHH
Confidence 34444455577777777777776655122222222334444556788999999999999999997 34556899999
Q ss_pred hhhhHHHHhccCCChhHHHHHHHHHHhhchhhhhhhhhhhccccCCCCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHH
Q 000730 1151 AMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEIGVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTI 1230 (1326)
Q Consensus 1151 ~~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL~~~l~~lf~~~~~~~~~~l~~~~f~~~i~k~L~~~~~~~~~~~l~~~l 1230 (1326)
..+++++=.+.|..+.++.+.+.++...+.. ..+..+....+
T Consensus 336 ~v~p~lld~lkekk~~l~d~l~~~~d~~~ns--------------------------------------~~l~~~~~~I~ 377 (815)
T KOG1820|consen 336 NVFPSLLDRLKEKKSELRDALLKALDAILNS--------------------------------------TPLSKMSEAIL 377 (815)
T ss_pred hhcchHHHHhhhccHHHHHHHHHHHHHHHhc--------------------------------------ccHHHHHHHHH
Confidence 9999999999999999998887777665540 11122233335
Q ss_pred HhhcCCChhHHHHHHHHHhhhhccCchhhhhhccHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHH
Q 000730 1231 QAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLLKS 1298 (1326)
Q Consensus 1231 ~y~kS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k~ 1298 (1326)
.+++...+.+|.--..|.+-.+..+++.-...-....+..++.. .-.|-|+.||..|.++++-+.|.
T Consensus 378 e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~-~~~D~~~~VR~Aa~e~~~~v~k~ 444 (815)
T KOG1820|consen 378 EALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIK-HINDTDKDVRKAALEAVAAVMKV 444 (815)
T ss_pred HHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhh-hccCCcHHHHHHHHHHHHHHHHH
Confidence 57888888889886777776666665444444566888999998 89999999999999999988754
No 95
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=92.30 E-value=2.8 Score=54.12 Aligned_cols=213 Identities=15% Similarity=0.119 Sum_probs=146.8
Q ss_pred CCC-ChhhHHHHHHHHHHHHhhcCchhHHHHHHHHhhhhccccccchHHHHHHHHHhhhcC-Cc--------hhhHHHH-
Q 000730 958 EQN-DKEKWINLIGDVAGCVSIKRPKEVQTICLILTKSINRQQRFQREAAAAALSEFVRYS-GG--------FDSLLEQ- 1026 (1326)
Q Consensus 958 ~W~-~~e~~~~gV~lLAr~m~~~~~~~~~~i~~~L~~~L~s~~~~~Ri~a~aflsELl~~~-~~--------~~~l~~~- 1026 (1326)
||. ..+--.++..-+.++++-.+.++-..+...++..|++++-... + +-.|+=++..+ .. .+.+.++
T Consensus 786 gs~dls~~al~~l~Wv~KaLl~R~~~~s~~ia~klld~Ls~~~~g~~-a-a~~fsiim~D~~~~~~r~~~a~~riLykQR 863 (1030)
T KOG1967|consen 786 GSLDLSEIALTVLAWVTKALLLRNHPESSEIAEKLLDLLSGPSTGSP-A-AKLFSIIMSDSNPLLKRKGHAEPRILYKQR 863 (1030)
T ss_pred CCcchhhHHHHHHHHHHHHHHHcCCcccchHHHHHHHhcCCccccch-H-HHhhHhhhccChHHhhhccccchhHHHHHH
Confidence 565 5566677777788888877777888999999999988553322 2 22333333321 11 1223333
Q ss_pred ----HHHHHHhhcCCCChhHHHHHhhhccCCc----chhhhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhccC---
Q 000730 1027 ----MVEALCRHVSDESPTVRGLCLRGLVQIP----SIHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSS--- 1095 (1326)
Q Consensus 1027 ----~i~~L~~~l~D~~~~VR~lsLrGLgnl~----~~~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l--- 1095 (1326)
++-.|.+...-....+|..=+.||+++. ..-+-...+.++|-++.+|+=.|-.|.+.+..++..++...
T Consensus 864 fF~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL 943 (1030)
T KOG1967|consen 864 FFCDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETL 943 (1030)
T ss_pred HHHhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhcccc
Confidence 6677888887666778888888887654 33556677999999999999888888788888777776543
Q ss_pred CcCCcchhHHhHHhhhcCcCcCCChHHHHHHHHHHHHhhhcCCCcchHHHHHHHHhhhhHHHHhccCCChhHHHHHHHHH
Q 000730 1096 SKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTL 1175 (1326)
Q Consensus 1096 ~~~~~~~~l~~l~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~LvpLLlHL~D~~~~V~~ack~tL 1175 (1326)
..++++.+...+..-=++ -++....||..|+..+|.|.++...+.-.+|+.+|.++++|-| -|+---||+.|-+|=
T Consensus 944 ~t~~~~Tlvp~lLsls~~-~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~L---dDkKRlVR~eAv~tR 1019 (1030)
T KOG1967|consen 944 QTEHLSTLVPYLLSLSSD-NDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKIL---DDKKRLVRKEAVDTR 1019 (1030)
T ss_pred chHHHhHHHHHHHhcCCC-CCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhcc---CcHHHHHHHHHHHHh
Confidence 344555544443221111 1111278999999999999998888888999999999999964 577778998886664
Q ss_pred H
Q 000730 1176 K 1176 (1326)
Q Consensus 1176 ~ 1176 (1326)
.
T Consensus 1020 ~ 1020 (1030)
T KOG1967|consen 1020 Q 1020 (1030)
T ss_pred h
Confidence 3
No 96
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=92.28 E-value=0.67 Score=59.97 Aligned_cols=141 Identities=18% Similarity=0.120 Sum_probs=92.2
Q ss_pred hhHHHHHhhhccCCcch----hhhhhHHHHHHHHHhhccCC-ChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCc
Q 000730 1040 PTVRGLCLRGLVQIPSI----HIHQYATQVLSVILALLDDL-DESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNL 1114 (1326)
Q Consensus 1040 ~~VR~lsLrGLgnl~~~----~v~~~~~~lL~all~~L~d~-d~~V~leAm~~L~~lL~~l~~~~~~~~l~~l~~~lrpf 1114 (1326)
+.=|.||.=-|+.+..+ +..-+...++.-|+.-|.|. +.-...=...+|++|-+.-+.....-.-.+-..++-..
T Consensus 571 ~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~ 650 (1387)
T KOG1517|consen 571 PEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILL 650 (1387)
T ss_pred HHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHH
Confidence 45666666666655432 33445566777788888774 33355556667787765444332222222333455567
Q ss_pred CcCCChHHHHHHHHHHHHhhhcCCC---cch-------------HHHHHHHHhhhhHHHHhccCCChhHHHHHHHHHHhh
Q 000730 1115 QVSMNVKMRRNAFAAFGALSNFGVG---SQR-------------EAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQV 1178 (1326)
Q Consensus 1115 fede~~~vR~aAi~LfG~L~~~~~~---~~~-------------~~~~eQv~~~LvpLLlHL~D~~~~V~~ack~tL~~~ 1178 (1326)
..|+-++||+||+.++|.+...+.. ... ....+++-.++.+++--++|..|-|+++-..+|.+.
T Consensus 651 LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls~~ 730 (1387)
T KOG1517|consen 651 LSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVALSHF 730 (1387)
T ss_pred hcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 7889999999999999999984311 111 123345667778999999999999999988888776
Q ss_pred ch
Q 000730 1179 AP 1180 (1326)
Q Consensus 1179 a~ 1180 (1326)
+.
T Consensus 731 ~~ 732 (1387)
T KOG1517|consen 731 VV 732 (1387)
T ss_pred HH
Confidence 63
No 97
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=92.13 E-value=39 Score=42.06 Aligned_cols=287 Identities=15% Similarity=0.141 Sum_probs=161.4
Q ss_pred hHHHHHHHHhhhhccccccchHHHHHHHHHhhhcCCc--hhhHHHHHHHHHHhhcCCCChhHHHHHhhhccCCcch----
Q 000730 983 EVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGG--FDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI---- 1056 (1326)
Q Consensus 983 ~~~~i~~~L~~~L~s~~~~~Ri~a~aflsELl~~~~~--~~~l~~~~i~~L~~~l~D~~~~VR~lsLrGLgnl~~~---- 1056 (1326)
.+++++.++-..+++++-.+|-+|+-.|...+.-|.. ......+.+-.+.+-.+|++--|..-..-.+|.|+.+
T Consensus 363 i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va~~ 442 (858)
T COG5215 363 IMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVAMI 442 (858)
T ss_pred hHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHHHh
Confidence 5788999999999999999999999999998887644 2344556666777777899999998888889988765
Q ss_pred -hhhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhccCCcC------CcchhHHhHHhhh---cCcCcCCChHHHHHH
Q 000730 1057 -HIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKD------AVEPILLNLSVRL---RNLQVSMNVKMRRNA 1126 (1326)
Q Consensus 1057 -~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~------~~~~~l~~l~~~l---rpffede~~~vR~aA 1126 (1326)
.-..|.+....+++-||.|- ..+...--...-++..++.+. .+.++...|...| ...- +.....|.++
T Consensus 443 i~p~~Hl~~~vsa~liGl~D~-p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~-~Ne~n~R~s~ 520 (858)
T COG5215 443 ISPCGHLVLEVSASLIGLMDC-PFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELA-LNESNLRVSL 520 (858)
T ss_pred cCccccccHHHHHHHhhhhcc-chHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhh-ccchhHHHHH
Confidence 22445677788999998873 333322222222233322221 2333444443333 1222 3345789999
Q ss_pred HHHHHHhhhcCCCcchHHH-------HHHHHhhhhHH--HHhccCCCh---------hHHHHHHHHHHhhchhhhh---h
Q 000730 1127 FAAFGALSNFGVGSQREAF-------LEQIHAMLPRL--ILHIYDDDL---------SVRQACRNTLKQVAPFMEI---G 1185 (1326)
Q Consensus 1127 i~LfG~L~~~~~~~~~~~~-------~eQv~~~LvpL--LlHL~D~~~---------~V~~ack~tL~~~a~lL~~---~ 1185 (1326)
|+.+|.|.-++...-.+.+ .+.+-.++--+ ++-++|.-. .|-.+--++.++ -.+. .
T Consensus 521 fsaLgtli~~~~d~V~~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~---~ie~v~D~ 597 (858)
T COG5215 521 FSALGTLILICPDAVSDILAGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRR---DIEDVEDQ 597 (858)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCC---CcccHHHH
Confidence 9999999987653211110 00011111000 122222110 111111111111 0111 1
Q ss_pred hhhhhccccCCC-CCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHHhh----cCCChhHHHHHHHHHhhhhccCchhhh
Q 000730 1186 VYGIFNSHCFNS-DHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAF----EAPWPIIQANAIYFSSSILCLCDDQHI 1260 (1326)
Q Consensus 1186 l~~lf~~~~~~~-~~~l~~~~f~~~i~k~L~~~~~~~~~~~l~~~l~y~----kS~~~~IR~aA~~fiG~l~~~~~~~~~ 1260 (1326)
+-.+|-+. ++. +...-+++.+..|. .|+.+..++...|+..-++|+ +.....+-..|+-|+|-+.+.+..+.+
T Consensus 598 lm~Lf~r~-les~~~t~~~~dV~~aIs-al~~sl~e~Fe~y~~~fiPyl~~aln~~d~~v~~~avglvgdlantl~~df~ 675 (858)
T COG5215 598 LMELFIRI-LESTKPTTAFGDVYTAIS-ALSTSLEERFEQYASKFIPYLTRALNCTDRFVLNSAVGLVGDLANTLGTDFN 675 (858)
T ss_pred HHHHHHHH-HhccCCchhhhHHHHHHH-HHHHHHHHHHHHHHhhhhHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhhHH
Confidence 22222221 111 12333455655543 455555555666666666654 444566888899999999988887665
Q ss_pred hhccHHHHHHHHHHHhccC
Q 000730 1261 LSLFYTQVFGLLVVKLSQS 1279 (1326)
Q Consensus 1261 ~~~~~e~l~~~L~~~Ll~D 1279 (1326)
++.+.+.+.|.. .++.
T Consensus 676 --~y~d~~ms~LvQ-~lss 691 (858)
T COG5215 676 --IYADVLMSSLVQ-CLSS 691 (858)
T ss_pred --HHHHHHHHHHHH-HhcC
Confidence 444666666666 4543
No 98
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.13 E-value=19 Score=46.30 Aligned_cols=269 Identities=15% Similarity=0.177 Sum_probs=159.8
Q ss_pred HHhhhhccccccchHHHHHHHHHhhhcCCchhhHHHHHHHHHHhhcCCCChhHHHHHhhhccCCcchhhhhhHHHHHHHH
Q 000730 990 ILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSIHIHQYATQVLSVI 1069 (1326)
Q Consensus 990 ~L~~~L~s~~~~~Ri~a~aflsELl~~~~~~~~l~~~~i~~L~~~l~D~~~~VR~lsLrGLgnl~~~~v~~~~~~lL~al 1069 (1326)
.|.++|+|..+.-+.=|+-++..++-+-.+-..+.-.++.. ....|+.||+|.-==|-.-|..+-+ ..---++.+
T Consensus 39 dL~~lLdSnkd~~KleAmKRIia~iA~G~dvS~~Fp~VVKN----Vaskn~EVKkLVyvYLlrYAEeqpd-LALLSIntf 113 (968)
T KOG1060|consen 39 DLKQLLDSNKDSLKLEAMKRIIALIAKGKDVSLLFPAVVKN----VASKNIEVKKLVYVYLLRYAEEQPD-LALLSINTF 113 (968)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH----hhccCHHHHHHHHHHHHHHhhcCCC-ceeeeHHHH
Confidence 45677788888888888888888777654433333333332 3456788888775444433332000 000014556
Q ss_pred HhhccCCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCcCCChHHHHHHHHHHHHhhhcCCCcchHHHHHHH
Q 000730 1070 LALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQI 1149 (1326)
Q Consensus 1070 l~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~l~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv 1149 (1326)
=.+|.|++..++.-|+++|+.|= +..+-.=+-..++..-.|..+-||..|..+.-+|=... -..++ |+
T Consensus 114 Qk~L~DpN~LiRasALRvlSsIR-------vp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd-~e~k~----qL 181 (968)
T KOG1060|consen 114 QKALKDPNQLIRASALRVLSSIR-------VPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLD-PEQKD----QL 181 (968)
T ss_pred HhhhcCCcHHHHHHHHHHHHhcc-------hhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCC-hhhHH----HH
Confidence 67899999999999999999863 22233334456678889999999999998887775522 12233 33
Q ss_pred HhhhhHHHHhccCCChhHHHHHHHHHHhhchh----hhhhhhhhhc----cccCCCCCCCChHHHHHHHHHHHHHhCcch
Q 000730 1150 HAMLPRLILHIYDDDLSVRQACRNTLKQVAPF----MEIGVYGIFN----SHCFNSDHRSDYETFVRDLTRQFVQHFPSR 1221 (1326)
Q Consensus 1150 ~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~l----L~~~l~~lf~----~~~~~~~~~l~~~~f~~~i~k~L~~~~~~~ 1221 (1326)
...+--| |.|..|-|+.++-.||..|+|- ++--.+.+.+ -..|+. -..++.+.+|--+.+|+-
T Consensus 182 ~e~I~~L---LaD~splVvgsAv~AF~evCPerldLIHknyrklC~ll~dvdeWgQ------vvlI~mL~RYAR~~l~~P 252 (968)
T KOG1060|consen 182 EEVIKKL---LADRSPLVVGSAVMAFEEVCPERLDLIHKNYRKLCRLLPDVDEWGQ------VVLINMLTRYARHQLPDP 252 (968)
T ss_pred HHHHHHH---hcCCCCcchhHHHHHHHHhchhHHHHhhHHHHHHHhhccchhhhhH------HHHHHHHHHHHHhcCCCc
Confidence 3333222 4699999999999999999972 2221111111 112322 235566666665555443
Q ss_pred --------------------------------HHHHHHHHHHhhcCCChhHHHHHHHHHhhhhccCchhhhhhccHHHHH
Q 000730 1222 --------------------------------IDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVF 1269 (1326)
Q Consensus 1222 --------------------------------~~~~l~~~l~y~kS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~l~ 1269 (1326)
+..++.++-..+.|..+.+=.|+| +...+..|..+ ...+.
T Consensus 253 ~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~a---ql~y~lAP~~~-----~~~i~ 324 (968)
T KOG1060|consen 253 TVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVA---QLFYHLAPKNQ-----VTKIA 324 (968)
T ss_pred cccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHH---hHHHhhCCHHH-----HHHHH
Confidence 345677777788887775554444 33333344333 25567
Q ss_pred HHHHHHhccCCChhHHHHHHHHHHH
Q 000730 1270 GLLVVKLSQSADAIVRATCSSSLGW 1294 (1326)
Q Consensus 1270 ~~L~~~Ll~Dpdp~VR~~Aa~aL~~ 1294 (1326)
++|.. |++ ..+.|+-..-+.+..
T Consensus 325 kaLvr-LLr-s~~~vqyvvL~nIa~ 347 (968)
T KOG1060|consen 325 KALVR-LLR-SNREVQYVVLQNIAT 347 (968)
T ss_pred HHHHH-HHh-cCCcchhhhHHHHHH
Confidence 88888 555 334555544444433
No 99
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=91.99 E-value=0.077 Score=39.96 Aligned_cols=28 Identities=29% Similarity=0.332 Sum_probs=20.4
Q ss_pred HHHHHhhcCCCChhHHHHHhhhccCCcc
Q 000730 1028 VEALCRHVSDESPTVRGLCLRGLVQIPS 1055 (1326)
Q Consensus 1028 i~~L~~~l~D~~~~VR~lsLrGLgnl~~ 1055 (1326)
+..+.+.++||++.||..|+++||+++.
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 4566777788888888888888887653
No 100
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=91.73 E-value=3.4 Score=52.86 Aligned_cols=143 Identities=15% Similarity=0.111 Sum_probs=95.0
Q ss_pred hHHHHHHHHHHhhcCCCChhHHHHHhhhccCCcch-h----------hhhhHHHHHHHHHhhccCCChhHHHHHHHHHHH
Q 000730 1022 SLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI-H----------IHQYATQVLSVILALLDDLDESVQLTAVSCLLT 1090 (1326)
Q Consensus 1022 ~l~~~~i~~L~~~l~D~~~~VR~lsLrGLgnl~~~-~----------v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~ 1090 (1326)
..++.+...+.....-+++.+|.-|+-++|++... . +..+.+.+..-+-.+.++.|+..+.-++.+|++
T Consensus 393 ~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN 472 (574)
T smart00638 393 EILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGN 472 (574)
T ss_pred HHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhc
Confidence 33444444443333445889999999999988742 1 245556666666666666677788888999998
Q ss_pred HhccCCcCCcchhHHhHHhhhcCcCc-C--CChHHHHHHHHHHHHhhhcCCCcchHHHHHHHHhhhhHHHHhccCCChhH
Q 000730 1091 ILKSSSKDAVEPILLNLSVRLRNLQV-S--MNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSV 1167 (1326)
Q Consensus 1091 lL~~l~~~~~~~~l~~l~~~lrpffe-d--e~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~LvpLLlHL~D~~~~V 1167 (1326)
+..... ...+.|+.. + -...+|.+|+..|..++.... +.+...+.|+. +=.+++++|
T Consensus 473 ~g~~~~-----------i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p--------~~v~~~l~~i~-~n~~e~~Ev 532 (574)
T smart00638 473 AGHPSS-----------IKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDP--------RKVQEVLLPIY-LNRAEPPEV 532 (574)
T ss_pred cCChhH-----------HHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCc--------hHHHHHHHHHH-cCCCCChHH
Confidence 775321 122334443 3 346899999999998875222 34455666655 446778999
Q ss_pred HHHHHHHHHhhchhhhh
Q 000730 1168 RQACRNTLKQVAPFMEI 1184 (1326)
Q Consensus 1168 ~~ack~tL~~~a~lL~~ 1184 (1326)
|.+|-..|.+|-|-..+
T Consensus 533 RiaA~~~lm~t~P~~~~ 549 (574)
T smart00638 533 RMAAVLVLMETKPSVAL 549 (574)
T ss_pred HHHHHHHHHhcCCCHHH
Confidence 99999999999665444
No 101
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=91.72 E-value=40 Score=41.41 Aligned_cols=293 Identities=14% Similarity=0.093 Sum_probs=160.1
Q ss_pred HHHHHhhhhccccccchHHHHHHHHHhhhcCCc--hhhHHHHHHHHHHhhcCCC-ChhHHHHHhhhccCCcch-hhhhh-
Q 000730 987 ICLILTKSINRQQRFQREAAAAALSEFVRYSGG--FDSLLEQMVEALCRHVSDE-SPTVRGLCLRGLVQIPSI-HIHQY- 1061 (1326)
Q Consensus 987 i~~~L~~~L~s~~~~~Ri~a~aflsELl~~~~~--~~~l~~~~i~~L~~~l~D~-~~~VR~lsLrGLgnl~~~-~v~~~- 1061 (1326)
....++++|++++..--..|.-+++-++..... .....+...+.|..-++.+ +...+-.+++.|+++... ..|..
T Consensus 102 ~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f 181 (429)
T cd00256 102 TWEPFFNLLNRQDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAF 181 (429)
T ss_pred chHHHHHHHcCCchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHH
Confidence 344455677777666677777788888765322 1222334555666655543 466666777888877643 11110
Q ss_pred -HHHHHHHHHhhccCC--ChhHHHHHHHHHHHH------hccCCcCCcchhHHhHHhhhcCcCcCCChHHHHHHHHHHHH
Q 000730 1062 -ATQVLSVILALLDDL--DESVQLTAVSCLLTI------LKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGA 1132 (1326)
Q Consensus 1062 -~~~lL~all~~L~d~--d~~V~leAm~~L~~l------L~~l~~~~~~~~l~~l~~~lrpffede~~~vR~aAi~LfG~ 1132 (1326)
....++.+.+.|... +-...++++.++=-+ ...+...++-+.+++|+. +.-.++|=..++..|-+
T Consensus 182 ~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k------~s~KEKvvRv~l~~l~N 255 (429)
T cd00256 182 VLADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAAEVLKRLSLIQDLSDILK------ESTKEKVIRIVLAIFRN 255 (429)
T ss_pred HHccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHHHHHhhccccHHHHHHHHHH------hhhhHHHHHHHHHHHHH
Confidence 011233444444321 123444444433221 222222333344444433 22356666677777777
Q ss_pred hhhcCCCc-chHHHHHHHH-hhhhHHHHhccCC---ChhHHHH---HHHHHHhhchhhh-h-hh-hhhhcccc-CCCCCC
Q 000730 1133 LSNFGVGS-QREAFLEQIH-AMLPRLILHIYDD---DLSVRQA---CRNTLKQVAPFME-I-GV-YGIFNSHC-FNSDHR 1200 (1326)
Q Consensus 1133 L~~~~~~~-~~~~~~eQv~-~~LvpLLlHL~D~---~~~V~~a---ck~tL~~~a~lL~-~-~l-~~lf~~~~-~~~~~~ 1200 (1326)
+....... .+..+...+. ..+++++-.|+.. |+++... -+..|.....-+- | +. .++...+. |.+
T Consensus 256 ll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp--- 332 (429)
T cd00256 256 LISKRVDREVKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSP--- 332 (429)
T ss_pred HhhcccccchhhhHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCC---
Confidence 77632211 1223334433 4777777766654 4555532 3333443333232 4 33 45555542 433
Q ss_pred CCh-HHHHHHHHHHHHHhCcchHHHHHHHHHHhh-cCCChhHHHHHHHHHhhhhccCc--hhhhhhccHHHHHHHHHHHh
Q 000730 1201 SDY-ETFVRDLTRQFVQHFPSRIDSYMGSTIQAF-EAPWPIIQANAIYFSSSILCLCD--DQHILSLFYTQVFGLLVVKL 1276 (1326)
Q Consensus 1201 l~~-~~f~~~i~k~L~~~~~~~~~~~l~~~l~y~-kS~~~~IR~aA~~fiG~l~~~~~--~~~~~~~~~e~l~~~L~~~L 1276 (1326)
.|. +.|+++=...|.++. ...+...+.++ +|..+.+=+-|+.=||.+++++| ......++ .-...+. |
T Consensus 333 ~H~se~FW~EN~~kf~~~~----~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg---~K~~vM~-L 404 (429)
T cd00256 333 VHKSEKFWRENADRLNEKN----YELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLG---GKQRVMR-L 404 (429)
T ss_pred CCCCchHHHHHHHHHHhcc----hHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcC---cHHHHHH-H
Confidence 442 678888777776554 34455666666 46667777888888999999997 23333333 2334555 7
Q ss_pred ccCCChhHHHHHHHHHHHHH
Q 000730 1277 SQSADAIVRATCSSSLGWLL 1296 (1326)
Q Consensus 1277 l~Dpdp~VR~~Aa~aL~~l~ 1296 (1326)
..+|||.||..|-.|...+-
T Consensus 405 m~h~d~~Vr~eAL~avQklm 424 (429)
T cd00256 405 LNHEDPNVRYEALLAVQKLM 424 (429)
T ss_pred hcCCCHHHHHHHHHHHHHHH
Confidence 88999999999999977763
No 102
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=91.51 E-value=2.2 Score=54.94 Aligned_cols=149 Identities=17% Similarity=0.162 Sum_probs=97.2
Q ss_pred hHHHHHHHHHHhhcCCCChhHHHHHhhhccCCcch-----------------hhhhhHHHHHHHHHhhccCCChhHHHHH
Q 000730 1022 SLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI-----------------HIHQYATQVLSVILALLDDLDESVQLTA 1084 (1326)
Q Consensus 1022 ~l~~~~i~~L~~~l~D~~~~VR~lsLrGLgnl~~~-----------------~v~~~~~~lL~all~~L~d~d~~V~leA 1084 (1326)
.+++.+...+.......++.+|..|+-++|.+... -.++|.+.+...+-.+....|+...+-+
T Consensus 431 e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 510 (618)
T PF01347_consen 431 ELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVY 510 (618)
T ss_dssp HHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHH
Confidence 44444444433333346788999999999987532 1245777777777777777788899999
Q ss_pred HHHHHHHhccCCcCCcchhHHhHHhhhcCcCcCC---ChHHHHHHHHHHHHhhhcCCCcchHHHHHHHHhhhhHHHHhcc
Q 000730 1085 VSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSM---NVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIY 1161 (1326)
Q Consensus 1085 m~~L~~lL~~l~~~~~~~~l~~l~~~lrpffede---~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~LvpLLlHL~ 1161 (1326)
+.+|+++... .+...+.|+..++ ...+|.+|+..|..+... .-+.+...+.|++.. .
T Consensus 511 LkaLgN~g~~-----------~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~--------~~~~v~~~l~~I~~n-~ 570 (618)
T PF01347_consen 511 LKALGNLGHP-----------ESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKH--------CPEKVREILLPIFMN-T 570 (618)
T ss_dssp HHHHHHHT-G-----------GGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT---------HHHHHHHHHHHHH--T
T ss_pred HHHhhccCCc-----------hhhHHHHhHhhhccccchHHHHHHHHHHHHHhhc--------CcHHHHHHHHHHhcC-C
Confidence 9999998752 2334445666666 799999999999987542 235677788886665 4
Q ss_pred CCChhHHHHHHHHHHhhchhhhh--hhhhhh
Q 000730 1162 DDDLSVRQACRNTLKQVAPFMEI--GVYGIF 1190 (1326)
Q Consensus 1162 D~~~~V~~ack~tL~~~a~lL~~--~l~~lf 1190 (1326)
.++++||-||-..|.+|-|-..+ .+....
T Consensus 571 ~e~~EvRiaA~~~lm~~~P~~~~l~~i~~~l 601 (618)
T PF01347_consen 571 TEDPEVRIAAYLILMRCNPSPSVLQRIAQSL 601 (618)
T ss_dssp TS-HHHHHHHHHHHHHT---HHHHHHHHHHH
T ss_pred CCChhHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 55788999999999999776555 444443
No 103
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=91.46 E-value=0.78 Score=43.97 Aligned_cols=68 Identities=12% Similarity=0.203 Sum_probs=57.3
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHhhhhccCchhhhhhccHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHH
Q 000730 1226 MGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLLK 1297 (1326)
Q Consensus 1226 l~~~l~y~kS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k 1297 (1326)
+..++.++.||.++||+.|...+..++.... ....+.+.+...+.. .++|+||.|=-.|-++|.-|..
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~---~~~~~~~~il~l~l~-~L~d~DsyVYL~aI~~L~~La~ 72 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS---EPVIDIPKILDLFLS-QLKDEDSYVYLNAIKGLAALAD 72 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCC---cchhhHHHHHHHHHH-HcCCCCchHHHHHHHHHHHHHH
Confidence 5677889999999999999999998887665 233456788888888 8999999999999999888774
No 104
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=91.28 E-value=1.6 Score=56.79 Aligned_cols=195 Identities=15% Similarity=0.129 Sum_probs=123.6
Q ss_pred HHHHHHHHhhccCCChhHHHHHHHHHHHHhccCCcCCcc-hhHHhHHhhhcCcCcCCChHHHHHHHHHHHHhhhcCCCcc
Q 000730 1063 TQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVE-PILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQ 1141 (1326)
Q Consensus 1063 ~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~-~~l~~l~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~ 1141 (1326)
|.+|..+++-- =++.|+.-|++.|+.=.| .+. ++.+-|.--...++...-.++|-.=......+.+....-+
T Consensus 475 PiVLQVLLSQv------HRlRAL~LL~RFLDlGpW-AV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ 547 (1387)
T KOG1517|consen 475 PIVLQVLLSQV------HRLRALVLLARFLDLGPW-AVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQ 547 (1387)
T ss_pred chHHHHHHHHH------HHHHHHHHHHHHhccchh-hhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhH
Confidence 56666666553 578899999999975333 222 2222222222345667778899999999999998665445
Q ss_pred hHHHHHHHHhhhhHHHHhccCCChhHHHHHHHHHHhhchhhhhhhhhhhccccCCCCCCCChHHHHHHHHHHHHHhCcch
Q 000730 1142 REAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEIGVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSR 1221 (1326)
Q Consensus 1142 ~~~~~eQv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL~~~l~~lf~~~~~~~~~~l~~~~f~~~i~k~L~~~~~~~ 1221 (1326)
.+-++|-.+...+..+---+--+++-+..|.|.|..+..-..-.-++.++.
T Consensus 548 ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~----------------------------- 598 (1387)
T KOG1517|consen 548 ADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNG----------------------------- 598 (1387)
T ss_pred HHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccc-----------------------------
Confidence 566677555544443321122245677777777766554321111111111
Q ss_pred HHHHHHHHHHhhcCC-ChhHHHHHHHHHhhhhccCchhhhhhccHHH-HHHHHHHHhccCCChhHHHHHHHHHHHHHHH
Q 000730 1222 IDSYMGSTIQAFEAP-WPIIQANAIYFSSSILCLCDDQHILSLFYTQ-VFGLLVVKLSQSADAIVRATCSSSLGWLLKS 1298 (1326)
Q Consensus 1222 ~~~~l~~~l~y~kS~-~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~-l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k~ 1298 (1326)
.++.-|+..+.++ .+=+|++.++-+|.+-++++..... +.+. ...-|.. +++||-|.||+.|.-|||-|...
T Consensus 599 --~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~--G~r~~AhekL~~-~LsD~vpEVRaAAVFALgtfl~~ 672 (1387)
T KOG1517|consen 599 --NLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWS--GRRDNAHEKLIL-LLSDPVPEVRAAAVFALGTFLSN 672 (1387)
T ss_pred --cHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhc--cccccHHHHHHH-HhcCccHHHHHHHHHHHHHHhcc
Confidence 1344566677774 5779999999999999988855543 2222 3334666 89999999999999999998753
No 105
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.99 E-value=8.7 Score=49.58 Aligned_cols=224 Identities=15% Similarity=0.175 Sum_probs=142.1
Q ss_pred hhcCCCChhHHHHHhhhccCCcch---hhhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHh
Q 000730 1033 RHVSDESPTVRGLCLRGLVQIPSI---HIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSV 1109 (1326)
Q Consensus 1033 ~~l~D~~~~VR~lsLrGLgnl~~~---~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~l~~ 1109 (1326)
..+.||-+-+|..+++-|..+... +-.....-++...++-|.|.|+-|-+-|++|+..+-+.-++. ++..++.
T Consensus 734 ~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e~----il~dL~e 809 (982)
T KOG4653|consen 734 SSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPED----ILPDLSE 809 (982)
T ss_pred HHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcchh----hHHHHHH
Confidence 446888899999999888877652 333445678899999999988889999999888777664432 2222222
Q ss_pred hhcCcCcCCC----hHHHHHHHHHHHHhhhcCCCcchHHHHHHHHhhhhHHHHhccCCChhHHHHHHHHHHhhchhhhhh
Q 000730 1110 RLRNLQVSMN----VKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEIG 1185 (1326)
Q Consensus 1110 ~lrpffede~----~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL~~~ 1185 (1326)
++++++ .+.|..-=+++|.++.. .|.....+++++.++...-+ .||+-.-|..+-..|+.|+..+.-.
T Consensus 810 ----~Y~s~k~k~~~d~~lkVGEai~k~~qa-~Gel~~~y~~~Li~tfl~gv---repd~~~RaSS~a~lg~Lcq~~a~~ 881 (982)
T KOG4653|consen 810 ----EYLSEKKKLQTDYRLKVGEAILKVAQA-LGELVFKYKAVLINTFLSGV---REPDHEFRASSLANLGQLCQLLAFQ 881 (982)
T ss_pred ----HHHhcccCCCccceehHHHHHHHHHHH-hccHHHHHHHHHHHHHHHhc---CCchHHHHHhHHHHHHHHHHHHhhh
Confidence 333322 23344444777777762 34555666676666555433 3776666777777788777654322
Q ss_pred hhhhhccccCCCCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHHhhcCCChhHHHHHHHHHhhhhccCchhhhhhcc-
Q 000730 1186 VYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLF- 1264 (1326)
Q Consensus 1186 l~~lf~~~~~~~~~~l~~~~f~~~i~k~L~~~~~~~~~~~l~~~l~y~kS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~- 1264 (1326)
+. +|+.+....+..--. -+-.+.+|++|+..+-.+++.+..+... +.
T Consensus 882 vs-----------------d~~~ev~~~Il~l~~--------------~d~s~~vRRaAv~li~~lL~~tg~dlLp-ilr 929 (982)
T KOG4653|consen 882 VS-----------------DFFHEVLQLILSLET--------------TDGSVLVRRAAVHLLAELLNGTGEDLLP-ILR 929 (982)
T ss_pred hh-----------------HHHHHHHHHHHHHHc--------------cCCchhhHHHHHHHHHHHHhccchhhHH-HHH
Confidence 11 233444443333111 1556779999999999888866633321 11
Q ss_pred --HHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHcc
Q 000730 1265 --YTQVFGLLVVKLSQSADAIVRATCSSSLGWLLKSIN 1300 (1326)
Q Consensus 1265 --~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k~~~ 1300 (1326)
.-+....+..+...++|-.+|-.|-.++..++..-.
T Consensus 930 ~~l~Dl~~tl~~~vr~~~dd~~klhaql~leei~a~l~ 967 (982)
T KOG4653|consen 930 LLLIDLDETLLSYVRQHDDDGLKLHAQLCLEEIQAALE 967 (982)
T ss_pred HHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHH
Confidence 113444455557789999999999999988885544
No 106
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.94 E-value=3.9 Score=52.13 Aligned_cols=163 Identities=21% Similarity=0.268 Sum_probs=100.9
Q ss_pred hhhHHHHHHHHHHHHhhcCchhHHHHHHHHhhhhccccccchHHHHHHHHHhhhcCCchhhHHHHHHHHHHhhcCCCChh
Q 000730 962 KEKWINLIGDVAGCVSIKRPKEVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPT 1041 (1326)
Q Consensus 962 ~e~~~~gV~lLAr~m~~~~~~~~~~i~~~L~~~L~s~~~~~Ri~a~aflsELl~~~~~~~~l~~~~i~~L~~~l~D~~~~ 1041 (1326)
++...+|+..+-+.|..+ ..+..++.-+++.++..+-.++-..--.+.- .-......-.-.++.+..-..||||.
T Consensus 27 ~~kr~~a~kkvIa~Mt~G--~DvSslF~dvvk~~~T~dlelKKlvyLYl~n---Ya~~~P~~a~~avnt~~kD~~d~np~ 101 (734)
T KOG1061|consen 27 KEKRKDAVKKVIAYMTVG--KDVSSLFPDVVKCMQTRDLELKKLVYLYLMN---YAKGKPDLAILAVNTFLKDCEDPNPL 101 (734)
T ss_pred hhhHHHHHHHHHhcCccC--cchHhhhHHHHhhcccCCchHHHHHHHHHHH---hhccCchHHHhhhhhhhccCCCCCHH
Confidence 366667777777766553 5677777777777766554443333222222 21122222233578888888899999
Q ss_pred HHHHHhhhccCCcchhhhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCcCCChH
Q 000730 1042 VRGLCLRGLVQIPSIHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVK 1121 (1326)
Q Consensus 1042 VR~lsLrGLgnl~~~~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~l~~~lrpffede~~~ 1121 (1326)
+|.+|+|-+|.+...++ ..++...|..++.|.+.-|+-.|..+..++-+.=.......- ++..+..+..|+++.
T Consensus 102 iR~lAlrtm~~l~v~~i---~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~~g---l~~~L~~ll~D~~p~ 175 (734)
T KOG1061|consen 102 IRALALRTMGCLRVDKI---TEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVEDSG---LVDALKDLLSDSNPM 175 (734)
T ss_pred HHHHHhhceeeEeehHH---HHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhccccc---hhHHHHHHhcCCCch
Confidence 99999998888776544 345567777788877777777777777776553222211121 222334444577888
Q ss_pred HHHHHHHHHHHhhh
Q 000730 1122 MRRNAFAAFGALSN 1135 (1326)
Q Consensus 1122 vR~aAi~LfG~L~~ 1135 (1326)
|=+.|......+..
T Consensus 176 VVAnAlaaL~eI~e 189 (734)
T KOG1061|consen 176 VVANALAALSEIHE 189 (734)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888877777765
No 107
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=90.65 E-value=88 Score=43.42 Aligned_cols=216 Identities=17% Similarity=0.188 Sum_probs=118.8
Q ss_pred HHHHHHHH-HHhccCCCCCCCCchhhhHhHHHHHHHHhhccc-ccCCCCChhHHHHHHHHhh-hccccCCCCcccHHHHH
Q 000730 442 DQLLDYIL-TLMGREENDSFADSSIELLHTQALALSACTTLV-TVEPKLTIETRNHVMKATL-GFFALPNDPIDVVNPLI 518 (1326)
Q Consensus 442 ~eLl~~l~-~li~~ep~~~l~s~~~~l~~vr~~am~a~t~L~-~L~P~l~~e~~~~ll~~c~-~v~~lp~~~~~l~~~~~ 518 (1326)
.+++..++ .+|..- .+.. .. .++.|+..|.... +++| +..+.+..|+ .-++-- ....
T Consensus 180 ~e~L~~ll~~lv~~~-~~~~-~~------a~~la~~li~~~a~~~~~-----~i~~f~~~~~~~~~s~~-------~~~~ 239 (1266)
T KOG1525|consen 180 SELLDVLLENLVKPG-RDTI-KE------ADKLASDLIERCADNLED-----TIANFLNSCLTEYKSRQ-------SSLK 239 (1266)
T ss_pred HHHHHHHHHHhccCC-CCcc-HH------HHHHHHHHHHHhhhhhch-----hHHHHHHHHHhhccccc-------cchh
Confidence 36666666 444433 3332 22 5677777766644 3333 3445555555 212100 0111
Q ss_pred HHHHHHHHHHhhhcCCCCcccHHHHHHHHHHHHHHhcChhHHHhhHHHHHHHHHHHHHHhhhhcccccCCCCCCccchhh
Q 000730 519 DNLITLLCAILLTSGEDGRSRADQLLHILRQIDQYVSSPVEYQRRRSCLAVYEMLLKFRTLCVIGYCALGCHGSCTHIKQ 598 (1326)
Q Consensus 519 ~al~~lL~~ll~~~~~d~~~~~~~L~~~l~~l~pwl~S~~~~eR~RA~~~~~~lL~~~~~~~~~~~c~~~~~~~~~~~~~ 598 (1326)
.-..+++-.+-.. .|+-|..++.+|..|+.|+++.+|..|+..+-+++..+-. |.
T Consensus 240 ~~~he~i~~L~~~-------~p~ll~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~------~l------------ 294 (1266)
T KOG1525|consen 240 IKYHELILELWRI-------APQLLLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDS------QL------------ 294 (1266)
T ss_pred hHHHHHHHHHHHh-------hHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchh------hh------------
Confidence 2233333334333 3688999999999999999999999999999999884421 10
Q ss_pred hhhhhhccCCCCCCcccCCchhhhhhhhHHHHhhccccCCChhHHHHHHHHHHHHHHHHhhCCCCCCCCCCcchhhhhhh
Q 000730 599 IDRAVLGNFSNLPSAYVLPSREALCLGNRVIMYLPRCADTDSEVRKISAQILDQLFSISLSLPRPVGSSSGIDLELSYGA 678 (1326)
Q Consensus 599 ~~~~~~~~~~~~ps~f~~~~~~f~~lG~Lvg~l~prC~D~~~~iR~~A~~~i~~Ll~I~l~~~~~~~~~~~~~~~~~~~~ 678 (1326)
+..-| .+-..+.=||.|-..+||...++++...|- .++.+. .+ ...
T Consensus 295 --------~~~~~--------------~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~-----~~~~~~---~~----~~~ 340 (1266)
T KOG1525|consen 295 --------SETYD--------------DLWSAFLGRFNDISVEVRMECVESIKQCLL-----NNPSIA---KA----STI 340 (1266)
T ss_pred --------cccch--------------HHHHHHHHHhccCChhhhhhHHHHhHHHHh-----cCchhh---hH----HHH
Confidence 11111 122344558999999999999999876631 121110 00 011
Q ss_pred hhhcHHHHHHhccCCCCChhHHHH--------HHHHHHHccCChhHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHhh
Q 000730 679 LSSLEDVIAILRSDASIDPSEVFN--------RIVSSVCILLTKDELVATLHSCTTAICDRTKQSAEGAIQAVVEFVTK 749 (1326)
Q Consensus 679 l~~l~~~~~~l~~~~~~~~~~~~~--------~i~~~i~~~L~~~el~~ll~~ll~~L~d~~~~~~~~A~~~L~~~l~~ 749 (1326)
...+++. + .|+..-.. .+.+ +...+.+ +++.-+-|.+.|....+..-|..-|..+.+.
T Consensus 341 ~~~l~~~------~--~D~~~rir~~v~i~~~~v~~-~~l~~~~----~ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~ 406 (1266)
T KOG1525|consen 341 LLALRER------D--LDEDVRVRTQVVIVACDVMK-FKLVYIP----LLLKLVAERLRDKKIKVRKQAMNGLAQLYKN 406 (1266)
T ss_pred HHHHHhh------c--CChhhhheeeEEEEEeehhH-hhhhhhH----HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 1222211 1 12111000 0111 1111111 2667788999999988888888888888874
No 108
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.30 E-value=4.9 Score=50.49 Aligned_cols=142 Identities=22% Similarity=0.230 Sum_probs=100.2
Q ss_pred HhhhhccccccchHHHHHHHHHhhhc--CCch----hhHHHHHHHHHHhhcCCCChhHHHHHhhhccCCcch--hhh--h
Q 000730 991 LTKSINRQQRFQREAAAAALSEFVRY--SGGF----DSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI--HIH--Q 1060 (1326)
Q Consensus 991 L~~~L~s~~~~~Ri~a~aflsELl~~--~~~~----~~l~~~~i~~L~~~l~D~~~~VR~lsLrGLgnl~~~--~v~--~ 1060 (1326)
++..|+-++...|.-|+-.|.++-.- |... ...++.=...|..-+.||.|.||.-|+.|+..+-.. .+- .
T Consensus 179 l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP~~ 258 (1005)
T KOG1949|consen 179 LWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMIPPT 258 (1005)
T ss_pred HHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcCHH
Confidence 45678888888999999999998653 3321 223333445577778999999999999999876532 110 0
Q ss_pred hHHHHHHHHHhhcc-CCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCcCCChHHHHHHHHHHHHhhh
Q 000730 1061 YATQVLSVILALLD-DLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSN 1135 (1326)
Q Consensus 1061 ~~~~lL~all~~L~-d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~l~~~lrpffede~~~vR~aAi~LfG~L~~ 1135 (1326)
-...++..+.+-+- |...+|++....||..++.. ....+++-.+..+++|.+-|.+..||.|+..+.-.+-.
T Consensus 259 i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~n---p~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik~ 331 (1005)
T KOG1949|consen 259 ILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDN---PLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIKA 331 (1005)
T ss_pred HHHHHHHHHHHHhhhccchheehhHhcCcHHHHcC---ccchhHHHHHHHhcchhhhccchhHHHHHHHHHHHHHh
Confidence 11222333333322 23467999999999999975 34457777888899999999999999999999877654
No 109
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=90.17 E-value=4.2 Score=50.03 Aligned_cols=190 Identities=17% Similarity=0.164 Sum_probs=124.1
Q ss_pred hhHHHHHHHHhhhhccccccchHHHH-HHHHH-hhhcCCchhhHHHHHHHHHHhhcCCCChhHHHHHhhhccCCcch--h
Q 000730 982 KEVQTICLILTKSINRQQRFQREAAA-AALSE-FVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI--H 1057 (1326)
Q Consensus 982 ~~~~~i~~~L~~~L~s~~~~~Ri~a~-aflsE-Ll~~~~~~~~l~~~~i~~L~~~l~D~~~~VR~lsLrGLgnl~~~--~ 1057 (1326)
.++-++++.+++.=+.+.-+.|+... +-|.+ .+..-+....+....+.++.+++..+...||.-+++=|+-+... .
T Consensus 45 ~~flr~vn~IL~~Kk~~si~dRil~fl~~f~~Y~~~~dpeg~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~e 124 (885)
T COG5218 45 EEFLRVVNTILACKKNPSIPDRILSFLKRFFEYDMPDDPEGEELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVRE 124 (885)
T ss_pred HHHHHHHHHhhccccCCCcHHHHHHHHHHHHHhcCCCChhhhHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcch
Confidence 35666777777766666677777653 22223 22221223567788999999999999999999999987755421 1
Q ss_pred h-hhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhccCCcC--CcchhHHhHHhhhcCcCcCCChHHHHHHHHH-----
Q 000730 1058 I-HQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKD--AVEPILLNLSVRLRNLQVSMNVKMRRNAFAA----- 1129 (1326)
Q Consensus 1058 v-~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~--~~~~~l~~l~~~lrpffede~~~vR~aAi~L----- 1129 (1326)
+ .-....++..+.+-+.|.+..|+.||+.+|.+.=+.-+.. .+..+++.+ ...|.+++||.+|.--
T Consensus 125 IDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~neen~~~n~l~~~------vqnDPS~EVRr~allni~vdn 198 (885)
T COG5218 125 IDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEENRIVNLLKDI------VQNDPSDEVRRLALLNISVDN 198 (885)
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChHHHHHHHHHHH------HhcCcHHHHHHHHHHHeeeCC
Confidence 1 2245678889999999999999999999999986543332 233444443 4589999999999743
Q ss_pred --HHHhhhc---CCCcchHHHHHHHHhhh-----------hHHH-HhccCCChhHHHHHHHHHHh
Q 000730 1130 --FGALSNF---GVGSQREAFLEQIHAML-----------PRLI-LHIYDDDLSVRQACRNTLKQ 1177 (1326)
Q Consensus 1130 --fG~L~~~---~~~~~~~~~~eQv~~~L-----------vpLL-lHL~D~~~~V~~ack~tL~~ 1177 (1326)
++-+..- +.+..+.-+.+.++..+ +-|+ --|.|-+-+|..||+.++..
T Consensus 199 sT~p~IlERarDv~~anRr~vY~r~Lp~iGd~~~lsi~kri~l~ewgl~dRe~sv~~a~~d~ia~ 263 (885)
T COG5218 199 STYPCILERARDVSGANRRMVYERCLPRIGDLKSLSIDKRILLMEWGLLDREFSVKGALVDAIAS 263 (885)
T ss_pred CcchhHHHHhhhhhHHHHHHHHHHHhhhhcchhhccccceehhhhhcchhhhhhHHHHHHHHHHH
Confidence 2333221 22334444555544333 1111 24678899999999988753
No 110
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=89.73 E-value=14 Score=44.80 Aligned_cols=208 Identities=12% Similarity=0.080 Sum_probs=125.1
Q ss_pred hHHHHHHHHHhhccCCChh-HHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCcCCChHHHHHHHHHHHHhhh--cC
Q 000730 1061 YATQVLSVILALLDDLDES-VQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSN--FG 1137 (1326)
Q Consensus 1061 ~~~~lL~all~~L~d~d~~-V~leAm~~L~~lL~~l~~~~~~~~l~~l~~~lrpffede~~~vR~aAi~LfG~L~~--~~ 1137 (1326)
-..+...+++.|=+|..+. |..+|+++++-.+-+-.-.....+..+-+.-|..-.+|..-.+|..|+-..|.+.. ..
T Consensus 387 ~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~ 466 (728)
T KOG4535|consen 387 DRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIV 466 (728)
T ss_pred cchhhhHHHHhcccchHHHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHc
Confidence 3467888888988875544 77888888887655544444455555555555444556678899999999999876 34
Q ss_pred CCcchHHHHHHHHhhhhHHHHhccCC----ChhHHHHHHHHHHhhchhhhhhhhhhhccccCCCCCCCChHHHHH-HHHH
Q 000730 1138 VGSQREAFLEQIHAMLPRLILHIYDD----DLSVRQACRNTLKQVAPFMEIGVYGIFNSHCFNSDHRSDYETFVR-DLTR 1212 (1326)
Q Consensus 1138 ~~~~~~~~~eQv~~~LvpLLlHL~D~----~~~V~~ack~tL~~~a~lL~~~l~~lf~~~~~~~~~~l~~~~f~~-~i~k 1212 (1326)
+.+..+.+.+.+.+.++--++.+.-. +..|...+-++|+....++..-.+ ..+++.+. ++.+
T Consensus 467 ~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~-------------~~~~e~~~~~~~~ 533 (728)
T KOG4535|consen 467 NMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEK-------------PTFAEIIEESIQA 533 (728)
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhh-------------ccHHHHHHHHHHh
Confidence 55666677777666655544443322 334666666666665555442100 00111110 1000
Q ss_pred HHHHhCcchHHHHHHHHHHhhcCCChhHHHHHHHHHhhhhccCchhhhhhccHHHHHHHHHHHhccCCChhHHHHHHHHH
Q 000730 1213 QFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSL 1292 (1326)
Q Consensus 1213 ~L~~~~~~~~~~~l~~~l~y~kS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL 1292 (1326)
+...-+ +- ..-.+|.||++.+|-+.++-.-......=-.+++++|-.++.+-..-.||..||.||
T Consensus 534 -l~~~v~---------~~-----~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL 598 (728)
T KOG4535|consen 534 -LISTVL---------TE-----AAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCKNFKVRIRAAAAL 598 (728)
T ss_pred -ccccee---------cc-----cccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhccceEeehhhhhh
Confidence 000000 00 123489999999998887654322222234678999988555567889999999998
Q ss_pred HHHH
Q 000730 1293 GWLL 1296 (1326)
Q Consensus 1293 ~~l~ 1296 (1326)
..-.
T Consensus 599 ~vp~ 602 (728)
T KOG4535|consen 599 SVPG 602 (728)
T ss_pred cCCC
Confidence 6543
No 111
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=89.48 E-value=7.3 Score=44.48 Aligned_cols=140 Identities=15% Similarity=0.203 Sum_probs=88.6
Q ss_pred HHHHHhhhhccccccchHHHHHHHHHhhhcCCchhhHHHHHHHHHHhhc-CCC-ChhHHHHHhhhccCCcch-hhhhhHH
Q 000730 987 ICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHV-SDE-SPTVRGLCLRGLVQIPSI-HIHQYAT 1063 (1326)
Q Consensus 987 i~~~L~~~L~s~~~~~Ri~a~aflsELl~~~~~~~~l~~~~i~~L~~~l-~D~-~~~VR~lsLrGLgnl~~~-~v~~~~~ 1063 (1326)
.+..+...|++++...|.-|...+.-+-- ....+..++.-+...++.. .++ |..++..++|-|.|+... +.+....
T Consensus 55 gi~lI~~lL~~p~~~vr~~AL~aL~Nls~-~~en~~~Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~ 133 (254)
T PF04826_consen 55 GISLIGSLLNDPNPSVREKALNALNNLSV-NDENQEQIKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLA 133 (254)
T ss_pred CHHHHHHHcCCCChHHHHHHHHHHHhcCC-ChhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHH
Confidence 44556777888888778777666554422 2223334455455555543 443 789999999999999743 1122223
Q ss_pred HHHHHHHhhccCCChhHHHHHHHHHHHHhccCC-------cCCcchhHHhHHhhhcCcCcC-CChHHHHHHHHHHHHhhh
Q 000730 1064 QVLSVILALLDDLDESVQLTAVSCLLTILKSSS-------KDAVEPILLNLSVRLRNLQVS-MNVKMRRNAFAAFGALSN 1135 (1326)
Q Consensus 1064 ~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~-------~~~~~~~l~~l~~~lrpffed-e~~~vR~aAi~LfG~L~~ 1135 (1326)
..++.++..|...+..+...++..|.++-..-. .+..+++ -.+|+. ++.++-.-++.+|+.+.+
T Consensus 134 ~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np~~~~~Ll~~q~~~~~--------~~Lf~~~~~~~~l~~~l~~~~ni~~ 205 (254)
T PF04826_consen 134 NYIPDLLSLLSSGSEKTKVQVLKVLVNLSENPDMTRELLSAQVLSSF--------LSLFNSSESKENLLRVLTFFENINE 205 (254)
T ss_pred hhHHHHHHHHHcCChHHHHHHHHHHHHhccCHHHHHHHHhccchhHH--------HHHHccCCccHHHHHHHHHHHHHHH
Confidence 345666666666688888888888877744321 2222222 245665 589999999999999976
No 112
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=89.31 E-value=1.5 Score=49.33 Aligned_cols=49 Identities=22% Similarity=0.337 Sum_probs=38.5
Q ss_pred cCCChHHHHHHHHHHHHhhhcCCCcchHHHHHHHHhhhhHHHHhccCCChhHHHHHHHHHHhh
Q 000730 1116 VSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQV 1178 (1326)
Q Consensus 1116 ede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~LvpLLlHL~D~~~~V~~ack~tL~~~ 1178 (1326)
+.|.+-||.-|..++|.++. . .++--|--++.|+++-|++.|-.+|-.+
T Consensus 230 ~~E~pMVRhEaAeALGaIa~---e-----------~~~~vL~e~~~D~~~vv~esc~valdm~ 278 (289)
T KOG0567|consen 230 ETEHPMVRHEAAEALGAIAD---E-----------DCVEVLKEYLGDEERVVRESCEVALDML 278 (289)
T ss_pred hhcchHHHHHHHHHHHhhcC---H-----------HHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 56778899999999999874 1 2455566788999999999999888764
No 113
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=89.11 E-value=1.4 Score=47.94 Aligned_cols=74 Identities=16% Similarity=0.112 Sum_probs=61.1
Q ss_pred chHHHHHHHHHHhhcCCChhHHHHHHHHHhhhhccCchhhhhhccHHHHHHHHHHHhccCCChhHHHHHHHHHHHHH-HH
Q 000730 1220 SRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLL-KS 1298 (1326)
Q Consensus 1220 ~~~~~~l~~~l~y~kS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~-k~ 1298 (1326)
..++.|+...+...-|+...+|..|..+++.+++..= +..-+.+..|+. |.-||+|.||..|.+.+..+. |+
T Consensus 4 ~l~Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGL------vnP~~cvp~lIA-L~ts~~~~ir~~A~~~l~~l~eK~ 76 (187)
T PF12830_consen 4 ALVQRYLKNILELCLSSDDSVRLAALQVLELILRQGL------VNPKQCVPTLIA-LETSPNPSIRSRAYQLLKELHEKH 76 (187)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCC------CChHHHHhHhhh-hhCCCChHHHHHHHHHHHHHHHHh
Confidence 3456789999999999999999999999999987542 233556788999 899999999999999998885 44
Q ss_pred cc
Q 000730 1299 IN 1300 (1326)
Q Consensus 1299 ~~ 1300 (1326)
..
T Consensus 77 ~s 78 (187)
T PF12830_consen 77 ES 78 (187)
T ss_pred HH
Confidence 43
No 114
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.87 E-value=8.7 Score=52.72 Aligned_cols=221 Identities=15% Similarity=0.186 Sum_probs=154.1
Q ss_pred HHHHHhhccCCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCcCCChHHHHHHHHHHHHhhhcCCCcchHHH
Q 000730 1066 LSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAF 1145 (1326)
Q Consensus 1066 L~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~l~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~~~~ 1145 (1326)
+.-++.-|...|+.--..|+.-|+.+.+..+......++...+.-...+--|++..||.+.+..|-.+.. +.++.+
T Consensus 43 l~~I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t----~lkk~l 118 (1312)
T KOG0803|consen 43 LDIIVKKLLKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLT----KLKKKL 118 (1312)
T ss_pred HHHHHHHHhccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHH----HHHHHh
Confidence 4455666666788888999999999998887776666676666666677889999999999999999997 344555
Q ss_pred HHHHHhhhhHHHHhccCCChhHHHHHHHHHHhhchhhhhhhhhhhccccCCCCCCCChHHHHHHHHHHHHHhCcchHHHH
Q 000730 1146 LEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEIGVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSY 1225 (1326)
Q Consensus 1146 ~eQv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL~~~l~~lf~~~~~~~~~~l~~~~f~~~i~k~L~~~~~~~~~~~ 1225 (1326)
-..+..-++|.++--.|....|+++++.++..+.+==+| .++...- + ++...-....+..+.|+.+.+.
T Consensus 119 sp~LK~li~~wl~~~~d~~~~vs~aa~~sf~~~f~~ek~--~~v~~~c--~-------~~i~~~~~~~~~~~~~~slSd~ 187 (1312)
T KOG0803|consen 119 SPFLKSLIPPWLGGQFDLDYPVSEAAKASFKDGFAEEKD--RHVWFKC--D-------PEIFYLVTEILVKETPDSLSDL 187 (1312)
T ss_pred hHHHHhhhhhhhheecccchHHHHHHHHHHHhhcChhhh--HHHHHHh--h-------HHHHHHHHHHHhccCccccchh
Confidence 556677888899999999999999999999999983333 2222210 0 1122222445678888888887
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHhhhh-ccCchhhhhhcc----HHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHcc
Q 000730 1226 MGSTIQAFEAPWPIIQANAIYFSSSIL-CLCDDQHILSLF----YTQVFGLLVVKLSQSADAIVRATCSSSLGWLLKSIN 1300 (1326)
Q Consensus 1226 l~~~l~y~kS~~~~IR~aA~~fiG~l~-~~~~~~~~~~~~----~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k~~~ 1300 (1326)
-.-+-.+..+--.++-..+-...-.++ +..+.++..... .=.--+.+=. +.+++.|.||..+-+.+..+.+...
T Consensus 188 ~~~s~Ee~E~k~~Rvi~ssLl~l~~l~~~~~~~~el~~~~~~~kt~~s~~~fWk-~~~~k~~~i~~~~~ell~~l~~~i~ 266 (1312)
T KOG0803|consen 188 RTLSSEELESKYQRVISSSLLLLLKLFKITGDEEELHSLSEKEKTFLSSEKFWK-LLKSKSPSIKVALLELLLSLIDDIL 266 (1312)
T ss_pred hhcchHHHHHhhHHHHHHHHHHHHHHHHHhCchHhhhhhhhhhhhhhhHHHHHH-HhcCCCcchhHHHHHHHHHHHhhhH
Confidence 777777777777776666655544444 555544443111 0011223445 7889999999999999888876554
Q ss_pred cc
Q 000730 1301 SH 1302 (1326)
Q Consensus 1301 ~~ 1302 (1326)
.+
T Consensus 267 ~~ 268 (1312)
T KOG0803|consen 267 NR 268 (1312)
T ss_pred Hh
Confidence 43
No 115
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.53 E-value=16 Score=46.75 Aligned_cols=149 Identities=19% Similarity=0.209 Sum_probs=100.1
Q ss_pred chhHHHHHHHHhhhhccccccchHHHHHHHHHhhhcCCchhhHHHHHHHHHHhhcCCCChhHHHHHhhhccCCcch----
Q 000730 981 PKEVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI---- 1056 (1326)
Q Consensus 981 ~~~~~~i~~~L~~~L~s~~~~~Ri~a~aflsELl~~~~~~~~l~~~~i~~L~~~l~D~~~~VR~lsLrGLgnl~~~---- 1056 (1326)
+.....++.-+...+++.+..-|.+|+.-...+-.-... ..-...+++.|..-+.|+||.|-.-|+.+|..|...
T Consensus 116 ~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~-~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~ 194 (734)
T KOG1061|consen 116 DKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPD-LVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSV 194 (734)
T ss_pred hHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChh-hccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCC
Confidence 345566777778888888888898888766665443211 111122456777777899999999999999988643
Q ss_pred hhhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCcCCChHHHHHHHHHHHHhhh
Q 000730 1057 HIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSN 1135 (1326)
Q Consensus 1057 ~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~l~~~lrpffede~~~vR~aAi~LfG~L~~ 1135 (1326)
..-...++++.-++..+.+ -.-+.-+..|..+......+.. =..+|+.++.|++.+-++.|=.+|..+|-.+.+
T Consensus 195 ~~~~l~~~~~~~lL~al~e---c~EW~qi~IL~~l~~y~p~d~~--ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~ 268 (734)
T KOG1061|consen 195 NLLELNPQLINKLLEALNE---CTEWGQIFILDCLAEYVPKDSR--EAEDICERLTPRLQHANSAVVLSAVKVILQLVK 268 (734)
T ss_pred CcccccHHHHHHHHHHHHH---hhhhhHHHHHHHHHhcCCCCch--hHHHHHHHhhhhhccCCcceEeehHHHHHHHHH
Confidence 2233446667777777643 3344444555555555555542 245788999999999888888888877776665
No 116
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=88.15 E-value=1.8 Score=41.46 Aligned_cols=85 Identities=14% Similarity=0.155 Sum_probs=45.3
Q ss_pred HHHHHhhhhccccccchHHHHHHHHHhhhcCCchhhHHHHHHHHHHhhcCCCChhHHHHHhhhccCCcchhhhhhHHHHH
Q 000730 987 ICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSIHIHQYATQVL 1066 (1326)
Q Consensus 987 i~~~L~~~L~s~~~~~Ri~a~aflsELl~~~~~~~~l~~~~i~~L~~~l~D~~~~VR~lsLrGLgnl~~~~v~~~~~~lL 1066 (1326)
.+...+..++++..+-|.-|..-+..|+.+......-.+.++..+...++|+++-|=--|++||+.++.. +-..++
T Consensus 4 ~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~----~p~~vl 79 (92)
T PF10363_consen 4 TLQEALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADR----HPDEVL 79 (92)
T ss_pred HHHHHHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHH----ChHHHH
Confidence 3444455556666666666666666666654311222344555666666666666666666666666542 223344
Q ss_pred HHHHhhccC
Q 000730 1067 SVILALLDD 1075 (1326)
Q Consensus 1067 ~all~~L~d 1075 (1326)
+.+++...|
T Consensus 80 ~~L~~~y~~ 88 (92)
T PF10363_consen 80 PILLDEYAD 88 (92)
T ss_pred HHHHHHHhC
Confidence 544444433
No 117
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=87.96 E-value=4.2 Score=49.82 Aligned_cols=132 Identities=17% Similarity=0.151 Sum_probs=89.9
Q ss_pred CcCcCCChHHHHHHHHHHHHhhhcCCCcchHHHHHHHHhhhhHHHHhc--cCCChhHHHHHHHHHHhhchhhhhhhhhhh
Q 000730 1113 NLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHI--YDDDLSVRQACRNTLKQVAPFMEIGVYGIF 1190 (1326)
Q Consensus 1113 pffede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~LvpLLlHL--~D~~~~V~~ack~tL~~~a~lL~~~l~~lf 1190 (1326)
.+..|..+-+|..-+...|- ++++... ...|.=+||. .|.|.+|+.|+-.||+-++
T Consensus 523 ell~d~ds~lRy~G~fs~al--Ay~GTgn---------~~vv~~lLh~avsD~nDDVrRAAViAlGfvc----------- 580 (926)
T COG5116 523 ELLYDKDSILRYNGVFSLAL--AYVGTGN---------LGVVSTLLHYAVSDGNDDVRRAAVIALGFVC----------- 580 (926)
T ss_pred HHhcCchHHhhhccHHHHHH--HHhcCCc---------chhHhhhheeecccCchHHHHHHHHheeeeE-----------
Confidence 45667788899887655543 4443333 3567778885 8999999999988877544
Q ss_pred ccccCCCCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHHhhcCCChhHHHHHHHHHhhhhccCchhhhhhccHHHHHH
Q 000730 1191 NSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFG 1270 (1326)
Q Consensus 1191 ~~~~~~~~~~l~~~~f~~~i~k~L~~~~~~~~~~~l~~~l~y~kS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~l~~ 1270 (1326)
..| + + . .+.+.-...+|..+++|++.|..+|.......++- ...
T Consensus 581 ----~~D-~----~-~------------------lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~--------a~d 624 (926)
T COG5116 581 ----CDD-R----D-L------------------LVGTVELLSESHNFHVRAGVAVALGIACAGTGDKV--------ATD 624 (926)
T ss_pred ----ecC-c----c-h------------------hhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHH--------HHH
Confidence 111 1 1 1 11122224577889999999999996655554333 233
Q ss_pred HHHHHhccCCChhHHHHHHHHHHHHHHHccccc
Q 000730 1271 LLVVKLSQSADAIVRATCSSSLGWLLKSINSHS 1303 (1326)
Q Consensus 1271 ~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k~~~~~~ 1303 (1326)
-|.. |-.||...||..|-.|++.+...+|--.
T Consensus 625 iL~~-L~~D~~dfVRQ~AmIa~~mIl~Q~n~~L 656 (926)
T COG5116 625 ILEA-LMYDTNDFVRQSAMIAVGMILMQCNPEL 656 (926)
T ss_pred HHHH-HhhCcHHHHHHHHHHHHHHHHhhcCccc
Confidence 4556 7889999999999999999998877544
No 118
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=87.89 E-value=51 Score=41.11 Aligned_cols=295 Identities=15% Similarity=0.207 Sum_probs=152.1
Q ss_pred HHHHHHHHHHHhhcCchhHHHHHHHHhhhhcccccc-chHHHHHHHHHhhhcCCc-hhhHHHHHHHHHHhhcCCCChhHH
Q 000730 966 INLIGDVAGCVSIKRPKEVQTICLILTKSINRQQRF-QREAAAAALSEFVRYSGG-FDSLLEQMVEALCRHVSDESPTVR 1043 (1326)
Q Consensus 966 ~~gV~lLAr~m~~~~~~~~~~i~~~L~~~L~s~~~~-~Ri~a~aflsELl~~~~~-~~~l~~~~i~~L~~~l~D~~~~VR 1043 (1326)
...+..|++++..+....++.|.+....++...... .|.+|.-++.+.+.++.. .........+.+.+.-.|++---|
T Consensus 8 ~~a~~~l~~~i~~~~~~~i~~iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~~~R~~fF~~I~~~~~~~d~~~~ 87 (464)
T PF11864_consen 8 IKAAEELCESIQKYPLSSIEEIWYAAKDLIDPNQPSEARRAALELLIACIKRQDSSSGLMRAEFFRDISDPSNDDDFDLR 87 (464)
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHhcCCCchhHHHH
Confidence 355666777777777777888887777777654433 488888888888887654 222223344555555555555666
Q ss_pred HHHhhhccCCcchhhhhhHHHHHHHHHhhcc---------------------------CCChhHHHHHHHHHHHHhcc--
Q 000730 1044 GLCLRGLVQIPSIHIHQYATQVLSVILALLD---------------------------DLDESVQLTAVSCLLTILKS-- 1094 (1326)
Q Consensus 1044 ~lsLrGLgnl~~~~v~~~~~~lL~all~~L~---------------------------d~d~~V~leAm~~L~~lL~~-- 1094 (1326)
.-+|+.|.+=+.. +.-+...+.+-+...|. +.++....+.+.-+.+++..
T Consensus 88 l~aL~~LT~~Grd-i~~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~nviKfn~ 166 (464)
T PF11864_consen 88 LEALIALTDNGRD-IDFFEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFLVNVIKFNF 166 (464)
T ss_pred HHHHHHHHcCCcC-chhcccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHHHHHHHHhcCC
Confidence 6677766654432 11111111222221111 11333455556666666543
Q ss_pred --CCcCCcchhHHhHHhhhcCcCcCCChHHHHHHHHHHHHhhhcCCCcchHHHHHHHHhhhhHHHHhccCCChhHHHHHH
Q 000730 1095 --SSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACR 1172 (1326)
Q Consensus 1095 --l~~~~~~~~l~~l~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~LvpLLlHL~D~~~~V~~ack 1172 (1326)
+++..++.++-+++.-.+. ....+++ .+++.+|..+..|+.=+. +.+ .++...|-.. .-+. .-|+
T Consensus 167 ~~l~e~~i~~lv~~i~~iC~~--Ts~~~di-~~~L~vldaii~y~~iP~-~sl-~~~i~vLCsi-~~~~-------~l~~ 233 (464)
T PF11864_consen 167 NYLDEDEISSLVDQICTICKS--TSSEDDI-EACLSVLDAIITYGDIPS-ESL-SPCIEVLCSI-VNSV-------SLCK 233 (464)
T ss_pred CCCCHHHHHHHHHHHHHHHhc--cCcHHHH-HHHHHHHHHHHHcCcCCh-HHH-HHHHHHHhhH-hccc-------ccch
Confidence 3444455444443332211 2223445 677899999888765332 111 1111222211 0000 1111
Q ss_pred HHHHhhchhhhh-hhhhhhccccCCCCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHHhhcCCChhHHHHHHHHHhhh
Q 000730 1173 NTLKQVAPFMEI-GVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSI 1251 (1326)
Q Consensus 1173 ~tL~~~a~lL~~-~l~~lf~~~~~~~~~~l~~~~f~~~i~k~L~~~~~~~~~~~l~~~l~y~kS~~~~IR~aA~~fiG~l 1251 (1326)
. -| -+..++..|. + ...++.+|..|.+..+.. + +...+-+.|+.|+|.+
T Consensus 234 ~---------~w~~m~nL~~S~~-g-------~~~i~~L~~iL~~~~~~~------------~-~~~~~lRGAv~~l~~l 283 (464)
T PF11864_consen 234 P---------SWRTMRNLLKSHL-G-------HSAIRTLCDILRSPDPQN------------K-RDINVLRGAVFFLRML 283 (464)
T ss_pred h---------HHHHHHHHHcCcc-H-------HHHHHHHHHHHcccCccc------------c-ccHHHHhhHHHHHHHH
Confidence 1 23 3344554442 1 245677777774333322 2 2334444699999988
Q ss_pred hccCchhhhhhccHHH--HHHHHHHHhccCCChhHHHHHHHHHHHHH-----HHccccccc
Q 000730 1252 LCLCDDQHILSLFYTQ--VFGLLVVKLSQSADAIVRATCSSSLGWLL-----KSINSHSWR 1305 (1326)
Q Consensus 1252 ~~~~~~~~~~~~~~e~--l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~-----k~~~~~~~~ 1305 (1326)
+...+.+....+.... +..+|... ++-+++.|-.-.-+.+..+. +-.....|.
T Consensus 284 l~~~~~~~~~~l~~~~~~vl~sl~~a-l~~~~~~v~~eIl~~i~~ll~~~~~~~l~~~~W~ 343 (464)
T PF11864_consen 284 LWGSGEQGYPSLPFSPSSVLPSLLNA-LKSNSPRVDYEILLLINRLLDGKYGRELSEEDWD 343 (464)
T ss_pred HhccccCCcceecccHHHHHHHHHHH-HhCCCCeehHHHHHHHHHHHhHhhhhhhcccCch
Confidence 7766555555554455 88999885 44455555544444444333 333445565
No 119
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=87.85 E-value=72 Score=40.43 Aligned_cols=126 Identities=19% Similarity=0.270 Sum_probs=73.3
Q ss_pred ccccchHHHHHHHHHhhhcCCchhhHHHHHHHHHHhhcCCCChhHHHHHhhhccCCcchhhhhhHHHHHHHHHhhccCCC
Q 000730 998 QQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSIHIHQYATQVLSVILALLDDLD 1077 (1326)
Q Consensus 998 ~~~~~Ri~a~aflsELl~~~~~~~~l~~~~i~~L~~~l~D~~~~VR~lsLrGLgnl~~~~v~~~~~~lL~all~~L~d~d 1077 (1326)
+....+..|+-|+..|.++. ..+-+..++.+..-..|++..||+-|+|||..+..+. ..+.+-+.+.+...|...|
T Consensus 34 g~~k~K~Laaq~I~kffk~F---P~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~-~~~v~kvaDvL~QlL~tdd 109 (556)
T PF05918_consen 34 GSPKEKRLAAQFIPKFFKHF---PDLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDN-PEHVSKVADVLVQLLQTDD 109 (556)
T ss_dssp S-HHHHHHHHHHHHHHHCC----GGGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T---T-HHHHHHHHHHHTT---
T ss_pred CCHHHHHHHHHHHHHHHhhC---hhhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhH-HHHHhHHHHHHHHHHhccc
Confidence 34556667777888888775 3455778999999999999999999999999998641 2355666677666666433
Q ss_pred hh---HHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCcCCChHHHHHHHHHH-HHhhh
Q 000730 1078 ES---VQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAF-GALSN 1135 (1326)
Q Consensus 1078 ~~---V~leAm~~L~~lL~~l~~~~~~~~l~~l~~~lrpffede~~~vR~aAi~Lf-G~L~~ 1135 (1326)
.. ++-.|+ ..++..=....++.++-+| .+- ..+.+.+|.-++.-. ..|..
T Consensus 110 ~~E~~~v~~sL---~~ll~~d~k~tL~~lf~~i----~~~-~~~de~~Re~~lkFl~~kl~~ 163 (556)
T PF05918_consen 110 PVELDAVKNSL---MSLLKQDPKGTLTGLFSQI----ESS-KSGDEQVRERALKFLREKLKP 163 (556)
T ss_dssp HHHHHHHHHHH---HHHHHH-HHHHHHHHHHHH----H----HS-HHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHH---HHHHhcCcHHHHHHHHHHH----Hhc-ccCchHHHHHHHHHHHHHHhh
Confidence 22 444444 4444332223344444443 321 345678999998544 55544
No 120
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.73 E-value=1e+02 Score=40.12 Aligned_cols=214 Identities=15% Similarity=0.174 Sum_probs=127.0
Q ss_pred HHHHHHHHHhhhcCCchhhHHHHHHHHHHhhcCCCChhHHHHHhhhccCCcchhhhhhHHHHHHHHHhhccCCChhHHHH
Q 000730 1004 EAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSIHIHQYATQVLSVILALLDDLDESVQLT 1083 (1326)
Q Consensus 1004 i~a~aflsELl~~~~~~~~l~~~~i~~L~~~l~D~~~~VR~lsLrGLgnl~~~~v~~~~~~lL~all~~L~d~d~~V~le 1083 (1326)
+.-+..-++++... ....-++...+..|+++-...|--=+.|++-++...-.+...+ .+.++-..++....-.+..
T Consensus 226 ~~lir~~~~~l~~~---~~~~s~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r~l~p-avs~Lq~flssp~~~lRfa 301 (865)
T KOG1078|consen 226 CMLIRIASELLKEN---QQADSPLFPFLESCLRHKSEMVIYEAARAIVSLPNTNSRELAP-AVSVLQLFLSSPKVALRFA 301 (865)
T ss_pred HHHHHHHHHHhhhc---ccchhhHHHHHHHHHhchhHHHHHHHHHHHhhccccCHhhcch-HHHHHHHHhcCcHHHHHHH
Confidence 33334445555533 1112345678888888888888888888888776543444444 4455555555555668889
Q ss_pred HHHHHHHHhccCCcCCcchhHHhHH-hhhcCcCcCCChHHHHHHHHHHHHhhhcCCCcchHHHHHHHHhhhhHHHHhccC
Q 000730 1084 AVSCLLTILKSSSKDAVEPILLNLS-VRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYD 1162 (1326)
Q Consensus 1084 Am~~L~~lL~~l~~~~~~~~l~~l~-~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~LvpLLlHL~D 1162 (1326)
|+.+|.++-..-.. .++.| .-+-++..|.|-.+---||.. |.+.|..+..+.+.+|+-. .+--+.|
T Consensus 302 AvRtLnkvAm~~P~------~v~~cN~elE~lItd~NrsIat~AITt---LLKTG~e~sv~rLm~qI~~----fv~disD 368 (865)
T KOG1078|consen 302 AVRTLNKVAMKHPQ------AVTVCNLDLESLITDSNRSIATLAITT---LLKTGTESSVDRLMKQISS----FVSDISD 368 (865)
T ss_pred HHHHHHHHHHhCCc------cccccchhHHhhhcccccchhHHHHHH---HHHhcchhHHHHHHHHHHH----HHHhccc
Confidence 99999998765322 22222 234678888887776667665 4455556777777777543 4556789
Q ss_pred CChhHHHHHHHHHHhhchhhhhhhhhhhccccCCCCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHHhhcC
Q 000730 1163 DDLSVRQACRNTLKQVAPFMEIGVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEA 1235 (1326)
Q Consensus 1163 ~~~~V~~ack~tL~~~a~lL~~~l~~lf~~~~~~~~~~l~~~~f~~~i~k~L~~~~~~~~~~~l~~~l~y~kS 1235 (1326)
+..-|+-.+-.+|+..-|..+..+-..+.+- +.+++++.|-.-+-+...-.++..|+.=..=+...-.|+.|
T Consensus 369 eFKivvvdai~sLc~~fp~k~~~~m~FL~~~-Lr~eGg~e~K~aivd~Ii~iie~~pdsKe~~L~~LCefIED 440 (865)
T KOG1078|consen 369 EFKIVVVDAIRSLCLKFPRKHTVMMNFLSNM-LREEGGFEFKRAIVDAIIDIIEENPDSKERGLEHLCEFIED 440 (865)
T ss_pred cceEEeHHHHHHHHhhccHHHHHHHHHHHHH-HHhccCchHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHh
Confidence 9888888888889888887655333333332 23345665532222333334455555444444444444443
No 121
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=87.58 E-value=6.5 Score=52.26 Aligned_cols=187 Identities=18% Similarity=0.201 Sum_probs=122.3
Q ss_pred ChhhHHHHHHHHHHHHhhcC-chhHHHHHHHHhhhhcccccc----chHHHHHHHHHhhhcCCchhhHHHHHHHHHHhhc
Q 000730 961 DKEKWINLIGDVAGCVSIKR-PKEVQTICLILTKSINRQQRF----QREAAAAALSEFVRYSGGFDSLLEQMVEALCRHV 1035 (1326)
Q Consensus 961 ~~e~~~~gV~lLAr~m~~~~-~~~~~~i~~~L~~~L~s~~~~----~Ri~a~aflsELl~~~~~~~~l~~~~i~~L~~~l 1035 (1326)
+.++..+.+.-++.-..-+. -..+.+.+.++....+.+... -+.+|+..+..|+.=+ ...-+.-+..|..-+
T Consensus 893 seDd~~d~i~~icE~eLl~gek~lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iS---a~fces~l~llftim 969 (1251)
T KOG0414|consen 893 SEDDLADLISGICEKELLYGEKSLLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCIS---AEFCESHLPLLFTIM 969 (1251)
T ss_pred cchhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhh---HHHHHHHHHHHHHHH
Confidence 35566666665554443333 223445555555555444433 3578888888887522 111122222333333
Q ss_pred -CCCChhHHHHHhhhccCCcchhhhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCc
Q 000730 1036 -SDESPTVRGLCLRGLVQIPSIHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNL 1114 (1326)
Q Consensus 1036 -~D~~~~VR~lsLrGLgnl~~~~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~l~~~lrpf 1114 (1326)
+.|+|.||.=+.=|+|.++..- ......-=+.++.-|.|.+..|+..|+..|+.++-. +.-.+.-.+-.+|. +
T Consensus 970 eksp~p~IRsN~VvalgDlav~f-pnlie~~T~~Ly~rL~D~~~~vRkta~lvlshLILn-dmiKVKGql~eMA~----c 1043 (1251)
T KOG0414|consen 970 EKSPSPRIRSNLVVALGDLAVRF-PNLIEPWTEHLYRRLRDESPSVRKTALLVLSHLILN-DMIKVKGQLSEMAL----C 1043 (1251)
T ss_pred hcCCCceeeecchheccchhhhc-ccccchhhHHHHHHhcCccHHHHHHHHHHHHHHHHh-hhhHhcccHHHHHH----H
Confidence 5899999999999999998531 011122235578889999999999999999998653 22233334444444 7
Q ss_pred CcCCChHHHHHHHHHHHHhhhcCCCcchHHHHHHHHhhhhHHHHhccCCCh
Q 000730 1115 QVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDL 1165 (1326)
Q Consensus 1115 fede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~LvpLLlHL~D~~~ 1165 (1326)
.+|++.+||..|=.-|-.|++.+ +-|.+.|+-.+-||.|.+-
T Consensus 1044 l~D~~~~IsdlAk~FF~Els~k~---------n~iynlLPdil~~Ls~~~l 1085 (1251)
T KOG0414|consen 1044 LEDPNAEISDLAKSFFKELSSKG---------NTIYNLLPDILSRLSNGNL 1085 (1251)
T ss_pred hcCCcHHHHHHHHHHHHHhhhcc---------cchhhhchHHHHhhccCcc
Confidence 79999999999999999999732 3477889999999999843
No 122
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.55 E-value=28 Score=44.52 Aligned_cols=267 Identities=14% Similarity=0.202 Sum_probs=147.8
Q ss_pred hHHHHHHHHhhhhccccccchHHHHHHHHHhhhcCCchhhHHHHHHHHHHhhcCCCChhHHHHHhhhccCCcch--hhhh
Q 000730 983 EVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI--HIHQ 1060 (1326)
Q Consensus 983 ~~~~i~~~L~~~L~s~~~~~Ri~a~aflsELl~~~~~~~~l~~~~i~~L~~~l~D~~~~VR~lsLrGLgnl~~~--~v~~ 1060 (1326)
++--+++..-+-|+.|+|.-|-...-|++.| .+.++++.++-...+.+.++++-||+=|+-+++.|-.. +.-+
T Consensus 96 EMILvcna~RkDLQHPNEyiRG~TLRFLckL-----kE~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~~~L~p 170 (948)
T KOG1058|consen 96 EMILVCNAYRKDLQHPNEYIRGSTLRFLCKL-----KEPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFEHLIP 170 (948)
T ss_pred HHHHHHHHHhhhccCchHhhcchhhhhhhhc-----CcHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhhhhhcC
Confidence 3445566666778888888888888887764 34677888888888899999999999998888876321 2112
Q ss_pred hHHHHHHHHHh-----------------------------hccC---CChh---HHHHHHHHHHH------------Hhc
Q 000730 1061 YATQVLSVILA-----------------------------LLDD---LDES---VQLTAVSCLLT------------ILK 1093 (1326)
Q Consensus 1061 ~~~~lL~all~-----------------------------~L~d---~d~~---V~leAm~~L~~------------lL~ 1093 (1326)
..|.++...+. ..++ -++. |+.|-+.-... |..
T Consensus 171 DapeLi~~fL~~e~DpsCkRNAFi~L~~~D~ErAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~~~~i~~i~~ 250 (948)
T KOG1058|consen 171 DAPELIESFLLTEQDPSCKRNAFLMLFTTDPERALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEKARYIRCIYN 250 (948)
T ss_pred ChHHHHHHHHHhccCchhHHHHHHHHHhcCHHHHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHhhHHHHHHHH
Confidence 22223322222 2221 1111 22222221111 111
Q ss_pred cCCcCCcchhHHhHHhhhcCcCcCCChHHHHHHHHHHHHhhhcCCCcch----------HHHHHHHHhhh-hHHHHhccC
Q 000730 1094 SSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQR----------EAFLEQIHAML-PRLILHIYD 1162 (1326)
Q Consensus 1094 ~l~~~~~~~~l~~l~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~----------~~~~eQv~~~L-vpLLlHL~D 1162 (1326)
.+... -+.+...-|..+-.++.++.. +++||=.+..=+.+-.+..-+ .+.-+-|++.+ ...|--|.-
T Consensus 251 lL~st-ssaV~fEaa~tlv~lS~~p~a-lk~Aa~~~i~l~~kesdnnvklIvldrl~~l~~~~~~il~~l~mDvLrvLss 328 (948)
T KOG1058|consen 251 LLSST-SSAVIFEAAGTLVTLSNDPTA-LKAAASTYIDLLVKESDNNVKLIVLDRLSELKALHEKILQGLIMDVLRVLSS 328 (948)
T ss_pred HHhcC-CchhhhhhcceEEEccCCHHH-HHHHHHHHHHHHHhccCcchhhhhHHHHHHHhhhhHHHHHHHHHHHHHHcCc
Confidence 11111 222333334444444444333 333333333222221111111 11112233333 344445666
Q ss_pred CChhHHHHHHHHHHhhchhhhh-hhh-----hhhccccCCCCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHHhhcCC
Q 000730 1163 DDLSVRQACRNTLKQVAPFMEI-GVY-----GIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAP 1236 (1326)
Q Consensus 1163 ~~~~V~~ack~tL~~~a~lL~~-~l~-----~lf~~~~~~~~~~l~~~~f~~~i~k~L~~~~~~~~~~~l~~~l~y~kS~ 1236 (1326)
++-+|+++|=.--..++..=+. ++. ++-.++.-+.+++-.|+..+-.......-+||+....-+.-.+.|+.|.
T Consensus 329 ~dldvr~Ktldi~ldLvssrNvediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~~aatvV~~ll~fisD~ 408 (948)
T KOG1058|consen 329 PDLDVRSKTLDIALDLVSSRNVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPEVAATVVSLLLDFISDS 408 (948)
T ss_pred ccccHHHHHHHHHHhhhhhccHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHhccC
Confidence 7888988775433333322222 222 2223332223345568877777778888999999999999999999999
Q ss_pred ChhHHHHHHHHHhhhhccCc
Q 000730 1237 WPIIQANAIYFSSSILCLCD 1256 (1326)
Q Consensus 1237 ~~~IR~aA~~fiG~l~~~~~ 1256 (1326)
++.--..-..|+--.+.-+|
T Consensus 409 N~~aas~vl~FvrE~iek~p 428 (948)
T KOG1058|consen 409 NEAAASDVLMFVREAIEKFP 428 (948)
T ss_pred CHHHHHHHHHHHHHHHHhCc
Confidence 99777777788887777776
No 123
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=87.02 E-value=13 Score=47.21 Aligned_cols=194 Identities=15% Similarity=0.160 Sum_probs=121.6
Q ss_pred hHHHHHHHHhhhhccccccchHHHHHHHHHhhhcCCc-hhhHHHHHHHHHHhhcCCCChhHHHHHhhhccCCcchhhhhh
Q 000730 983 EVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGG-FDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSIHIHQY 1061 (1326)
Q Consensus 983 ~~~~i~~~L~~~L~s~~~~~Ri~a~aflsELl~~~~~-~~~l~~~~i~~L~~~l~D~~~~VR~lsLrGLgnl~~~~v~~~ 1061 (1326)
.+.+++++++....++....|.-..-++.-++++... ...+...+...|..++.|-.|.||.-|+.+|..+-......-
T Consensus 82 lV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~dee 161 (892)
T KOG2025|consen 82 LVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDEE 161 (892)
T ss_pred HHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCCc
Confidence 5888999999999999999999999999999886433 456677788889999999999999999999886642100000
Q ss_pred HHHHHHHHHhhcc-CCChhHHHHHHHHHH-------HHhccCCcCCcchhHHh-HHhhhcCcCcCCChHHHHHHHHHHHH
Q 000730 1062 ATQVLSVILALLD-DLDESVQLTAVSCLL-------TILKSSSKDAVEPILLN-LSVRLRNLQVSMNVKMRRNAFAAFGA 1132 (1326)
Q Consensus 1062 ~~~lL~all~~L~-d~d~~V~leAm~~L~-------~lL~~l~~~~~~~~l~~-l~~~lrpffede~~~vR~aAi~LfG~ 1132 (1326)
-.+.+++...++ |+++.|+-.||..++ .|+++..+ +...--. +=.++-| +-++|..+|.-+-.
T Consensus 162 -~~v~n~l~~liqnDpS~EVRRaaLsnI~vdnsTlp~IveRarD--V~~anRrlvY~r~lp-----kid~r~lsi~krv~ 233 (892)
T KOG2025|consen 162 -CPVVNLLKDLIQNDPSDEVRRAALSNISVDNSTLPCIVERARD--VSGANRRLVYERCLP-----KIDLRSLSIDKRVL 233 (892)
T ss_pred -ccHHHHHHHHHhcCCcHHHHHHHHHhhccCcccchhHHHHhhh--hhHHHHHHHHHHhhh-----hhhhhhhhHHHHHH
Confidence 112333333333 455678888876543 34443221 1110000 0011112 22678888887777
Q ss_pred hhhcCCCc----chHHHHHHHHh--------hhhHHHHhccCCCh-hHHHHHHHHHHh-hchhhhh
Q 000730 1133 LSNFGVGS----QREAFLEQIHA--------MLPRLILHIYDDDL-SVRQACRNTLKQ-VAPFMEI 1184 (1326)
Q Consensus 1133 L~~~~~~~----~~~~~~eQv~~--------~LvpLLlHL~D~~~-~V~~ack~tL~~-~a~lL~~ 1184 (1326)
|..+|--. -+.++.+.+.+ +++-||-.|.=++. +|+..+-.||+. ..+..++
T Consensus 234 LlewgLnDRe~sVk~A~~d~il~~Wl~~~dgni~ElL~~ldvsnss~vavk~lealf~~v~e~v~~ 299 (892)
T KOG2025|consen 234 LLEWGLNDREFSVKGALVDAILSGWLRFSDGNILELLERLDVSNSSEVAVKALEALFSGVREDVGS 299 (892)
T ss_pred HHHHhhhhhhhHHHHHHHHHHHHHHhhhccccHHHHHHHhccccchHHHHHHHHHHHHHHHHHhhh
Confidence 77754322 23334444444 66666666665655 788888888887 4444443
No 124
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=86.95 E-value=12 Score=40.55 Aligned_cols=162 Identities=17% Similarity=0.155 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHHhhhcCCCcchHHHHHH-----------HHhhhhHHHHhccCCChhHHHHHHHHHHhhchhhhhhhhhh
Q 000730 1121 KMRRNAFAAFGALSNFGVGSQREAFLEQ-----------IHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEIGVYGI 1189 (1326)
Q Consensus 1121 ~vR~aAi~LfG~L~~~~~~~~~~~~~eQ-----------v~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL~~~l~~l 1189 (1326)
+||.+|+.+++++++..+.+.-..+-.. .-.+|...++ +|+++.||.++..++...-.-.+-.+..-
T Consensus 1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il--~Dp~~kvR~aA~~~l~~lL~gsk~~L~~A 78 (182)
T PF13251_consen 1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCIL--KDPSPKVRAAAASALAALLEGSKPFLAQA 78 (182)
T ss_pred ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHH--cCCchhHHHHHHHHHHHHHHccHHHHHHH
Confidence 4899999999999996333221111111 1123444444 59999999999888766433222211111
Q ss_pred hccccCCCCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHHhhcCCChhHHHHHHHHHhhhhccCchhhhhhccHHHHH
Q 000730 1190 FNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVF 1269 (1326)
Q Consensus 1190 f~~~~~~~~~~l~~~~f~~~i~k~L~~~~~~~~~~~l~~~l~y~kS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~l~ 1269 (1326)
+. ..++..+|-.|-..+...+++-+...+ .++.-=++ ..+-...-.-+..+++..|=+.+..--...++
T Consensus 79 -e~---~~~~~~sFtslS~tLa~~i~~lH~~Ll-----~~L~~E~~--~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v 147 (182)
T PF13251_consen 79 -EE---SKGPSGSFTSLSSTLASMIMELHRGLL-----LALQAEKS--PPVLTQLLKCLAVLVQATPYHRLPPGLLTEVV 147 (182)
T ss_pred -Hh---cCCCCCCcccHHHHHHHHHHHHHHHHH-----HHHhcccc--cHHHHHHHHHHHHHHccCChhhcCHhHHHHHH
Confidence 11 113456777777777777776433332 22221122 22333344445566666663333332345677
Q ss_pred HHHHHHhccCCChhHHHHHHHHHHHHH
Q 000730 1270 GLLVVKLSQSADAIVRATCSSSLGWLL 1296 (1326)
Q Consensus 1270 ~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~ 1296 (1326)
+.+.. +..+-|+.||..+.-++|.+.
T Consensus 148 ~~v~~-~l~~~d~~v~v~~l~~~~~l~ 173 (182)
T PF13251_consen 148 TQVRP-LLRHRDPNVRVAALSCLGALL 173 (182)
T ss_pred HHHHH-HHhcCCCcHHHHHHHHHHHHH
Confidence 77888 677899999999999998876
No 125
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=86.94 E-value=33 Score=40.03 Aligned_cols=110 Identities=16% Similarity=0.170 Sum_probs=77.1
Q ss_pred hHHHHHHHHh-hhhccccccchHHHHHHHHHhhhcCCchhhHHHHHHHHHHhhcCCCChhHHHHHhhhccCCcch----h
Q 000730 983 EVQTICLILT-KSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI----H 1057 (1326)
Q Consensus 983 ~~~~i~~~L~-~~L~s~~~~~Ri~a~aflsELl~~~~~~~~l~~~~i~~L~~~l~D~~~~VR~lsLrGLgnl~~~----~ 1057 (1326)
.+..++..++ |.+++.+..-|..|+-.++=+ +.....+-+.-+..+...++..++.||..|++++..+... .
T Consensus 23 ~l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~---~Lld~~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~ 99 (298)
T PF12719_consen 23 SLESLLDSLILPAVQSSDPAVRELALKCLGLC---CLLDKELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDI 99 (298)
T ss_pred hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH---HHhChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchh
Confidence 4557776665 999999998898888655532 1112223333344455555555999999999999877421 1
Q ss_pred h--------hhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhccC
Q 000730 1058 I--------HQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSS 1095 (1326)
Q Consensus 1058 v--------~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l 1095 (1326)
. ......++..+...|++.++.+...|..|+.|++-.-
T Consensus 100 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~ 145 (298)
T PF12719_consen 100 FDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSG 145 (298)
T ss_pred ccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcC
Confidence 1 1234578888999999888899999999999998653
No 126
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=86.71 E-value=1.1 Score=44.27 Aligned_cols=87 Identities=17% Similarity=0.263 Sum_probs=70.1
Q ss_pred HHHHHhhcCC----CChhHHHHHhhhccCCcc---hhhhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhccCCcCCc
Q 000730 1028 VEALCRHVSD----ESPTVRGLCLRGLVQIPS---IHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAV 1100 (1326)
Q Consensus 1028 i~~L~~~l~D----~~~~VR~lsLrGLgnl~~---~~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~ 1100 (1326)
++.+.+-+.| .+..-|+.+++|+|.+-. ..+....+++..++-.+++.+ +....|+++-...+..++..++
T Consensus 13 l~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~--~l~~~al~~W~~fi~~L~~~~l 90 (107)
T PF08064_consen 13 LTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIP--ELREEALSCWNCFIKTLDEEDL 90 (107)
T ss_pred HHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCh--hhHHHHHHHHHHHHHHCCHHHH
Confidence 3444444444 577788999999997753 377888899988888888753 7888899999999999999999
Q ss_pred chhHHhHHhhhcCcCc
Q 000730 1101 EPILLNLSVRLRNLQV 1116 (1326)
Q Consensus 1101 ~~~l~~l~~~lrpffe 1116 (1326)
++++-++..-+.|+++
T Consensus 91 ~~ll~~~~~~l~~~~~ 106 (107)
T PF08064_consen 91 GPLLDQIFAILLPLWD 106 (107)
T ss_pred HHHHHHHHHHHHHhcc
Confidence 9999999888888765
No 127
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=86.50 E-value=1.2 Score=43.91 Aligned_cols=88 Identities=16% Similarity=0.272 Sum_probs=70.5
Q ss_pred HHHHHHhhcCCCC--h--hHHHHHhhhccCCcc---hhhhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhccCCcCC
Q 000730 1027 MVEALCRHVSDES--P--TVRGLCLRGLVQIPS---IHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDA 1099 (1326)
Q Consensus 1027 ~i~~L~~~l~D~~--~--~VR~lsLrGLgnl~~---~~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~ 1099 (1326)
+++.+.+-+.|++ . .-|+-++|++|.+-. +.+..+.+++..++..+|+ .++....|+.+...++..+++.+
T Consensus 12 il~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~--~~eL~~~al~~W~~~i~~L~~~~ 89 (107)
T smart00802 12 ILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALE--IPELRSLALRCWHVLIKTLKEEE 89 (107)
T ss_pred HHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHHhCCHHH
Confidence 4455666666666 3 338899999997643 3788888999999999997 45699999999999999999999
Q ss_pred cchhHHhHHhhhcCcCc
Q 000730 1100 VEPILLNLSVRLRNLQV 1116 (1326)
Q Consensus 1100 ~~~~l~~l~~~lrpffe 1116 (1326)
+++++-++..-+.|+++
T Consensus 90 l~~ll~~~~~~i~~~~~ 106 (107)
T smart00802 90 LGPLLDQIFAAILPLWP 106 (107)
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 99999888887777765
No 128
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=86.36 E-value=11 Score=43.21 Aligned_cols=226 Identities=19% Similarity=0.211 Sum_probs=119.3
Q ss_pred HHHhhcCCCChhHHHHHhhhccCCcch----hh-hhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhccCCcCCcchhH
Q 000730 1030 ALCRHVSDESPTVRGLCLRGLVQIPSI----HI-HQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPIL 1104 (1326)
Q Consensus 1030 ~L~~~l~D~~~~VR~lsLrGLgnl~~~----~v-~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l 1104 (1326)
.|-..+.++++.+|.-+++-|+++... .. ++.+..+++-+.+-|+ |...+..|+.||..+.+.-.. .....
T Consensus 3 ~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~--D~~~~~~~l~gl~~L~~~~~~--~~~~~ 78 (262)
T PF14500_consen 3 SLGEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLD--DHACVQPALKGLLALVKMKNF--SPESA 78 (262)
T ss_pred chhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhc--cHhhHHHHHHHHHHHHhCcCC--ChhhH
Confidence 345566777777777777777655322 11 2223445555666664 456677778888888743221 11122
Q ss_pred HhHHhhhcCcC--cCCChHHHHHHHHHHHHhhhcCCCcchHHHHHHHHhhhhHHHHhccCCChhHHHHHHHHHHhhchhh
Q 000730 1105 LNLSVRLRNLQ--VSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFM 1182 (1326)
Q Consensus 1105 ~~l~~~lrpff--ede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL 1182 (1326)
..++..+..-. ..--...|...+.++..+... ....+ ..+-...+.-++|+-|.+.+=+ +++
T Consensus 79 ~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~----~~~~l-~~~~~~fv~~~i~~~~gEkDPR-----------nLl 142 (262)
T PF14500_consen 79 VKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLEN----HREAL-QSMGDDFVYGFIQLIDGEKDPR-----------NLL 142 (262)
T ss_pred HHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHH----hHHHH-HhchhHHHHHHHHHhccCCCHH-----------HHH
Confidence 23332221111 233467899999999988862 11222 2233455556666666655443 234
Q ss_pred hh-hhhhhhccccCCCCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHHhhcCCChhHHHHHHHHHhhhhccCchhhhh
Q 000730 1183 EI-GVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHIL 1261 (1326)
Q Consensus 1183 ~~-~l~~lf~~~~~~~~~~l~~~~f~~~i~k~L~~~~~~~~~~~l~~~l~y~kS~~~~IR~aA~~fiG~l~~~~~~~~~~ 1261 (1326)
-| ++...+.+. |. .+++..++...+.-.|| +.|--.|..+.+-.+--+.-.+-..+....
T Consensus 143 ~~F~l~~~i~~~-~~------~~~~~e~lFd~~~cYFP----------I~F~pp~~dp~~IT~edLk~~L~~cl~s~~-- 203 (262)
T PF14500_consen 143 LSFKLLKVILQE-FD------ISEFAEDLFDVFSCYFP----------ITFRPPPNDPYGITREDLKRALRNCLSSTP-- 203 (262)
T ss_pred HHHHHHHHHHHh-cc------cchhHHHHHHHhhheee----------eeeeCCCCCCCCCCHHHHHHHHHHHhcCcH--
Confidence 44 444444332 21 24566777777776666 444445544322222222222211111111
Q ss_pred hccHHHHHHHHHHHhccCCChhHHHHHHHHHHHHH
Q 000730 1262 SLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLL 1296 (1326)
Q Consensus 1262 ~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~ 1296 (1326)
.--+..+..|.++ +.++.+.|+.-+-++|....
T Consensus 204 -~fa~~~~p~LleK-L~s~~~~~K~D~L~tL~~c~ 236 (262)
T PF14500_consen 204 -LFAPFAFPLLLEK-LDSTSPSVKLDSLQTLKACI 236 (262)
T ss_pred -hhHHHHHHHHHHH-HcCCCcHHHHHHHHHHHHHH
Confidence 1125667777775 56678889998888887755
No 129
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=86.24 E-value=7.3 Score=44.73 Aligned_cols=198 Identities=15% Similarity=0.173 Sum_probs=112.3
Q ss_pred HHHhhhhccccccchHHHHHHHHHhhhcCC---chhhHHHHHHHHHHhhcCCCChhHHHHHhhhccCCcchhh--hhhHH
Q 000730 989 LILTKSINRQQRFQREAAAAALSEFVRYSG---GFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSIHI--HQYAT 1063 (1326)
Q Consensus 989 ~~L~~~L~s~~~~~Ri~a~aflsELl~~~~---~~~~l~~~~i~~L~~~l~D~~~~VR~lsLrGLgnl~~~~v--~~~~~ 1063 (1326)
..|.++|.|+++..|.-|+-++++.+..-. ....-.+.+++.+.+++.|. +.+... ++|+..+...+. .....
T Consensus 2 ~~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D~-~~~~~~-l~gl~~L~~~~~~~~~~~~ 79 (262)
T PF14500_consen 2 QSLGEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDDH-ACVQPA-LKGLLALVKMKNFSPESAV 79 (262)
T ss_pred cchhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhccH-hhHHHH-HHHHHHHHhCcCCChhhHH
Confidence 457899999999999999999999998633 23333466889999999654 455555 888877653211 11234
Q ss_pred HHHHHHHhhccCC--ChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCcCCC-hHHHHHHHHHHHHhhhcCCCc
Q 000730 1064 QVLSVILALLDDL--DESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMN-VKMRRNAFAAFGALSNFGVGS 1140 (1326)
Q Consensus 1064 ~lL~all~~L~d~--d~~V~leAm~~L~~lL~~l~~~~~~~~l~~l~~~lrpffede~-~~vR~aAi~LfG~L~~~~~~~ 1140 (1326)
.++.++....+-. -...+......|..++..-.. .+..+--.....+-...+.|+ |.-=.-+|.++-.+.+.-.
T Consensus 80 ~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~-~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~-- 156 (262)
T PF14500_consen 80 KILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHRE-ALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFD-- 156 (262)
T ss_pred HHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHH-HHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc--
Confidence 4555554433221 134778888888887765221 111111112222333566666 4444567777777765221
Q ss_pred chHHHHHHHH---hhhhHHHHhccCCCh------hHHHHHHHHHHhhchhhhhhhhhhhcc
Q 000730 1141 QREAFLEQIH---AMLPRLILHIYDDDL------SVRQACRNTLKQVAPFMEIGVYGIFNS 1192 (1326)
Q Consensus 1141 ~~~~~~eQv~---~~LvpLLlHL~D~~~------~V~~ack~tL~~~a~lL~~~l~~lf~~ 1192 (1326)
-..+.|+++ .+=.|.-++=--.+| +.+.+.+.+|.....|-.+-+.-++.|
T Consensus 157 -~~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa~~~~p~LleK 216 (262)
T PF14500_consen 157 -ISEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFAPFAFPLLLEK 216 (262)
T ss_pred -cchhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhHHHHHHHHHHH
Confidence 245566644 444566666543343 444455554443233333355555555
No 130
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.01 E-value=4.6 Score=47.18 Aligned_cols=127 Identities=18% Similarity=0.152 Sum_probs=78.8
Q ss_pred CChhHHHHHhhhccCCcch----hhhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHh---------ccCCcCCcchhH
Q 000730 1038 ESPTVRGLCLRGLVQIPSI----HIHQYATQVLSVILALLDDLDESVQLTAVSCLLTIL---------KSSSKDAVEPIL 1104 (1326)
Q Consensus 1038 ~~~~VR~lsLrGLgnl~~~----~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL---------~~l~~~~~~~~l 1104 (1326)
.+-.||+-+.-.|.||... ++--+ ..-++.+++.+...|.+|..-+-.++++|. ...+++
T Consensus 179 kdirvqrnatgaLlnmThs~EnRr~LV~-aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~------ 251 (550)
T KOG4224|consen 179 KDIRVQRNATGALLNMTHSRENRRVLVH-AGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPK------ 251 (550)
T ss_pred chhhHHHHHHHHHHHhhhhhhhhhhhhc-cCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccc------
Confidence 3457888888888888642 11111 122567777777778778877777777663 222221
Q ss_pred HhHHhhhcCcCcCCChHHHHHHHHHHHHhhhcCCCcchHHHHHHHH-hhhhHHHHhccCCChhHHHHHHHHHHhh
Q 000730 1105 LNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIH-AMLPRLILHIYDDDLSVRQACRNTLKQV 1178 (1326)
Q Consensus 1105 ~~l~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~-~~LvpLLlHL~D~~~~V~~ack~tL~~~ 1178 (1326)
+.-.+-.++++.++.+.+-|--.+|.++. +.+.-++-+- ++++.++--|||+--...-+.-+..+.+
T Consensus 252 --lv~~Lv~Lmd~~s~kvkcqA~lALrnlas-----dt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrni 319 (550)
T KOG4224|consen 252 --LVPALVDLMDDGSDKVKCQAGLALRNLAS-----DTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNI 319 (550)
T ss_pred --hHHHHHHHHhCCChHHHHHHHHHHhhhcc-----cchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhc
Confidence 23334468999999999999999999986 3333444444 4555555566777554444444444333
No 131
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=85.39 E-value=2.8 Score=41.32 Aligned_cols=77 Identities=14% Similarity=0.147 Sum_probs=68.2
Q ss_pred hhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCcCCChHHHHHHHHHHHHhhhcCCCcchHHHHHHHHhhhhHHH
Q 000730 1078 ESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLI 1157 (1326)
Q Consensus 1078 ~~V~leAm~~L~~lL~~l~~~~~~~~l~~l~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~LvpLL 1157 (1326)
..-...++.+++.++. +....+.++..+|.--|+.-.+.+ ++|..|++.+..+.+.-+..+-.++.+|+...++|+.
T Consensus 29 ~~ek~~~l~si~~lI~-~~~~~i~~~~pQI~a~L~sal~~~--~l~~~al~~W~~fi~~L~~~~l~~ll~~~~~~l~~~~ 105 (107)
T PF08064_consen 29 IPEKKRALRSIEELIK-LGGSHISSARPQIMACLQSALEIP--ELREEALSCWNCFIKTLDEEDLGPLLDQIFAILLPLW 105 (107)
T ss_pred HHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHhCCh--hhHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHhc
Confidence 4577889999999999 778899999999999999988876 9999999999999998777888899999998888864
No 132
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=84.99 E-value=4.5 Score=43.07 Aligned_cols=118 Identities=17% Similarity=0.210 Sum_probs=86.3
Q ss_pred hhHHHHHHHHhhhhccccccchHHHHHHHHHhhhcCCc------hhhHHHHHHHHHHhhcCCCChhHHHHHhhhccCCcc
Q 000730 982 KEVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGG------FDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPS 1055 (1326)
Q Consensus 982 ~~~~~i~~~L~~~L~s~~~~~Ri~a~aflsELl~~~~~------~~~l~~~~i~~L~~~l~D~~~~VR~lsLrGLgnl~~ 1055 (1326)
..++..+..+..+|+|.....|.+++..+...+..+.- ...+++.++..|.+ ++.+.++..++..|+.|-.
T Consensus 21 ~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~---~~~~~~~~~ai~~L~~l~~ 97 (165)
T PF08167_consen 21 SALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEK---PDPPSVLEAAIITLTRLFD 97 (165)
T ss_pred HHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHHHH
Confidence 37888899999999999999999999988888876421 23445555555544 5567889999999987632
Q ss_pred ----------hhhhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhccCCcCCcchhHH
Q 000730 1056 ----------IHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILL 1105 (1326)
Q Consensus 1056 ----------~~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~ 1105 (1326)
+-.....+.++.+++..+++ +.+...++.+|+.++..- ....+|+.-
T Consensus 98 ~~~~~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~-ptt~rp~~~ 154 (165)
T PF08167_consen 98 LIRGKPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHH-PTTFRPFAN 154 (165)
T ss_pred HhcCCCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHC-CccccchHH
Confidence 12355567888888888775 678889999999999864 344444443
No 133
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=84.68 E-value=3.1 Score=53.76 Aligned_cols=129 Identities=18% Similarity=0.188 Sum_probs=94.3
Q ss_pred ChhhHHHHHHHHHHHHh-hcCchhHHHHHHHHhhhhccccccchHHHHHHHHHhhhcC-CchhhHHHHHHHHHHhhcCCC
Q 000730 961 DKEKWINLIGDVAGCVS-IKRPKEVQTICLILTKSINRQQRFQREAAAAALSEFVRYS-GGFDSLLEQMVEALCRHVSDE 1038 (1326)
Q Consensus 961 ~~e~~~~gV~lLAr~m~-~~~~~~~~~i~~~L~~~L~s~~~~~Ri~a~aflsELl~~~-~~~~~l~~~~i~~L~~~l~D~ 1038 (1326)
...-|+.|...+-...- +--.|.++.++..|+-.|.=++..-|+-+.-.+.-++... .....-+.+++-.|+.--+|+
T Consensus 883 ~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~~Tlvp~lLsls~~~ 962 (1030)
T KOG1967|consen 883 QKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHLSTLVPYLLSLSSDN 962 (1030)
T ss_pred chhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHHhHHHHHHHhcCCCC
Confidence 34566666655444221 1123578888888888888888888888887777766643 233333466777777766666
Q ss_pred C---hhHHHHHhhhccCCcch----hhhhhHHHHHHHHHhhccCCChhHHHHHHHHHH
Q 000730 1039 S---PTVRGLCLRGLVQIPSI----HIHQYATQVLSVILALLDDLDESVQLTAVSCLL 1089 (1326)
Q Consensus 1039 ~---~~VR~lsLrGLgnl~~~----~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~ 1089 (1326)
+ .+||..||++|+.++.. -...|++.++.|+...|||+-.-|+.||..+=.
T Consensus 963 ~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~ 1020 (1030)
T KOG1967|consen 963 DNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQ 1020 (1030)
T ss_pred CcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhh
Confidence 5 89999999999988752 557899999999999999988889999987633
No 134
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=84.59 E-value=24 Score=47.36 Aligned_cols=138 Identities=16% Similarity=0.130 Sum_probs=87.1
Q ss_pred CcCcCCChHHHHHHHHHHHHhhhc-CCCcchHHHHHHHHh-hhhHHHHhccCCChhHHHHHHHHHHhhchhhhhhhhhhh
Q 000730 1113 NLQVSMNVKMRRNAFAAFGALSNF-GVGSQREAFLEQIHA-MLPRLILHIYDDDLSVRQACRNTLKQVAPFMEIGVYGIF 1190 (1326)
Q Consensus 1113 pffede~~~vR~aAi~LfG~L~~~-~~~~~~~~~~eQv~~-~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL~~~l~~lf 1190 (1326)
++++.|+-.+|.+-..+.|++... -.+..-+..-+++-. .+--|.-|+.|-++-||...=..+.++ |
T Consensus 319 ~lld~es~~lRnavlei~~n~V~~~l~d~e~~~~sk~~r~~~le~l~erl~Dvsa~vRskVLqv~~~l-----------~ 387 (1251)
T KOG0414|consen 319 DLLDSESYTLRNAVLEICANLVASELRDEELEEMSKSLRDELLELLRERLLDVSAYVRSKVLQVFRRL-----------F 387 (1251)
T ss_pred HhcCCchHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHH-----------H
Confidence 478999999999999999999862 222332444444444 777788999999999998764333332 2
Q ss_pred ccccCCCCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHHhhcCCChhHHHHHHHHHhhhhccCc--hhhhhhccHHHH
Q 000730 1191 NSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCD--DQHILSLFYTQV 1268 (1326)
Q Consensus 1191 ~~~~~~~~~~l~~~~f~~~i~k~L~~~~~~~~~~~l~~~l~y~kS~~~~IR~aA~~fiG~l~~~~~--~~~~~~~~~e~l 1268 (1326)
+.|. ...++.+.++.-++.-+.|-..-+|++|+..+-.++..-| .+++...-....
T Consensus 388 ~~~s----------------------~p~~~~~eV~~la~grl~DkSslVRk~Ai~Ll~~~L~~~Pfs~~~~~~~~~~~~ 445 (1251)
T KOG0414|consen 388 QQHS----------------------IPLGSRTEVLELAIGRLEDKSSLVRKNAIQLLSSLLDRHPFSSELRSDDLRAKL 445 (1251)
T ss_pred HccC----------------------CCccHHHHHHHHHhcccccccHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhH
Confidence 2221 1234455566677778888889999999988776666555 333322211223
Q ss_pred HHHHHHHhccCCChhH
Q 000730 1269 FGLLVVKLSQSADAIV 1284 (1326)
Q Consensus 1269 ~~~L~~~Ll~Dpdp~V 1284 (1326)
...++. |.++-+|.+
T Consensus 446 E~~~~~-~e~~~e~t~ 460 (1251)
T KOG0414|consen 446 EKELQK-LEEELESTE 460 (1251)
T ss_pred HHHHHh-hhhhccccc
Confidence 334555 454444443
No 135
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=84.52 E-value=5.9 Score=49.68 Aligned_cols=141 Identities=15% Similarity=0.181 Sum_probs=94.0
Q ss_pred hHHHHHHHHHHHHhhhcCCCcchHHHHHHHHhhhhHHHHhccCCChhHHHHHHHHHHhhchhhhh-hhhhhhccccCCCC
Q 000730 1120 VKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEI-GVYGIFNSHCFNSD 1198 (1326)
Q Consensus 1120 ~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL~~-~l~~lf~~~~~~~~ 1198 (1326)
..+|+||-..|-.+.+.+..-.-..=...|..-||+|+ .||+..|-.+.-.|++... ++. .++.-
T Consensus 391 ~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll---~dp~~~i~~~~lgai~NlV--mefs~~ksk--------- 456 (678)
T KOG1293|consen 391 HDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLL---MDPEIMIMGITLGAICNLV--MEFSNLKSK--------- 456 (678)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHh---hCcchhHHHHHHHHHHHHH--hhcccHHHH---------
Confidence 56788888888887763110000011245667778877 7999888877655555533 111 22211
Q ss_pred CCCChHHHHHHHHHHHHHhCcchHHHHHHHHHHhhcCCChhHHHHHHHHHhhhhccCchhhhhhccHHHHHHHHHHHhcc
Q 000730 1199 HRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQ 1278 (1326)
Q Consensus 1199 ~~l~~~~f~~~i~k~L~~~~~~~~~~~l~~~l~y~kS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~ 1278 (1326)
|+ .+-++.+...|..+|.+..|+++.|++-.++.+.+.....+.+...-.+.+.. +-.
T Consensus 457 -------fl--------------~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~-l~n 514 (678)
T KOG1293|consen 457 -------FL--------------RNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILD-LIN 514 (678)
T ss_pred -------HH--------------HcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHH-HHh
Confidence 11 12246667789999999999999999999888887666655555544455666 789
Q ss_pred CCChhHHHHHHHHHHHHH
Q 000730 1279 SADAIVRATCSSSLGWLL 1296 (1326)
Q Consensus 1279 Dpdp~VR~~Aa~aL~~l~ 1296 (1326)
|||+.|+..+-+-|..|.
T Consensus 515 d~d~~Vqeq~fqllRNl~ 532 (678)
T KOG1293|consen 515 DPDWAVQEQCFQLLRNLT 532 (678)
T ss_pred CCCHHHHHHHHHHHHHhh
Confidence 999999998887776654
No 136
>PF14868 DUF4487: Domain of unknown function (DUF4487)
Probab=84.11 E-value=84 Score=40.04 Aligned_cols=261 Identities=11% Similarity=0.102 Sum_probs=142.8
Q ss_pred HHHHhhcCCCChhHHHHHhhh---ccCCcchhhhhhHHHHHHHHHhhccCCC-hhHHHHHHHHHHHHhccCCcCCcchhH
Q 000730 1029 EALCRHVSDESPTVRGLCLRG---LVQIPSIHIHQYATQVLSVILALLDDLD-ESVQLTAVSCLLTILKSSSKDAVEPIL 1104 (1326)
Q Consensus 1029 ~~L~~~l~D~~~~VR~lsLrG---Lgnl~~~~v~~~~~~lL~all~~L~d~d-~~V~leAm~~L~~lL~~l~~~~~~~~l 1104 (1326)
..|.+.+=.|+.....++..- ++..+..+.-.+-=..|--++..+-... ..+.+..+ |+++...+.+.+-.
T Consensus 269 ~~LL~~vL~~~~l~~lLa~DvWCFlaRygtaeLc~~hv~~L~~Lik~lp~~~~~~~~L~~L--L~Rl~~~m~~~~q~--- 343 (559)
T PF14868_consen 269 RFLLENVLHPHFLCSLLAMDVWCFLARYGTAELCAHHVNLLAHLIKSLPSSSYQLINLSIL--LRRLFFLMAPDHQS--- 343 (559)
T ss_pred HHHHHHHcCCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHcCCcchhHhhHHHH--HHHHHHhcCHHHHH---
Confidence 456666677888888888886 5555543221111122333344443211 22344444 77777766655443
Q ss_pred HhHHhhhcCc-------------CcCCChHHHHHHHHHHHHhh-----hcCC-CcchHHHHHHHHhhhhHHHHhccCCCh
Q 000730 1105 LNLSVRLRNL-------------QVSMNVKMRRNAFAAFGALS-----NFGV-GSQREAFLEQIHAMLPRLILHIYDDDL 1165 (1326)
Q Consensus 1105 ~~l~~~lrpf-------------fede~~~vR~aAi~LfG~L~-----~~~~-~~~~~~~~eQv~~~LvpLLlHL~D~~~ 1165 (1326)
.+..+..|. |+.=.+++|.-+..=..+.+ ++-. +.....-.++....+-.++-..++...
T Consensus 344 -~~v~~f~p~~~~~n~~lw~~~~~~~L~~~lr~~~~~~i~~~~~~~~~~~~~~~~~s~g~l~~~~~~LsalL~~c~~~~~ 422 (559)
T PF14868_consen 344 -EFVQDFSPSAETENLLLWEGFPLNALSDELRKQIVQEIFTLCFAFCQKWLSPSSCSLGELGQLNFALSALLQVCNSSGS 422 (559)
T ss_pred -HHHHhcCccccccchHHHHhccHHhCCHHHHHHHHHHHHHHHHHHHHHhcccCCcCcchHhHHHHHHHHHHHHhccccc
Confidence 333334444 12233445554442222211 1111 233334456666667777777777766
Q ss_pred hHHHHHHHHHHhhchhhhhhh--hhhhccccCCCCCCCChHHHHHHHHHHHHHhC-cchHHHHHHHHHHhhcC-CChhHH
Q 000730 1166 SVRQACRNTLKQVAPFMEIGV--YGIFNSHCFNSDHRSDYETFVRDLTRQFVQHF-PSRIDSYMGSTIQAFEA-PWPIIQ 1241 (1326)
Q Consensus 1166 ~V~~ack~tL~~~a~lL~~~l--~~lf~~~~~~~~~~l~~~~f~~~i~k~L~~~~-~~~~~~~l~~~l~y~kS-~~~~IR 1241 (1326)
.+-.....++..+..-+...+ +.+-..+.++ -.+. .+-.+...+.+.. |+.+...+......+++ |-..+|
T Consensus 423 ~~d~~~~~~i~~ii~~lw~~~~~~~v~~~~~l~----~~~~-~lL~l~~~~~~~l~~~~i~qv~~~l~~l~~~~pp~~~k 497 (559)
T PF14868_consen 423 TIDMKDQTFIVEIISQLWSFLSSKQVSSQPYLQ----QTLS-LLLSLLSFFIQLLDPQLIEQVLTELTSLFKSEPPDHVK 497 (559)
T ss_pred ccCHHHHHHHHHHHHHHHHHhchhhhccchHHH----HHHH-HHHHHHHHHHHhcChHHHHHHHHHHHHHHhhCCCccch
Confidence 666555555555444332222 2221111000 0112 2223344445544 77777777776677744 445599
Q ss_pred HHHHHHHhhhhccCchhhhhhccHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHccc
Q 000730 1242 ANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLLKSINS 1301 (1326)
Q Consensus 1242 ~aA~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k~~~~ 1301 (1326)
-+++.|+|.+++...++.....-...+..-+-. |+.|.+..|+..|-+|.|+|...+++
T Consensus 498 l~~~~FLs~lg~~~i~~~~q~~~~~~Ls~Lf~~-LL~d~~Wll~q~ALeAF~~FAe~T~~ 556 (559)
T PF14868_consen 498 LALLDFLSSLGKLFIPESDQNPVSPALSELFHM-LLADRHWLLHQHALEAFGQFAERTSH 556 (559)
T ss_pred HHHHHHHHHhccccCCccccchhhhHHHHHHHH-HhcCCcHHHHHHHHHHHHHHhccCCc
Confidence 999999999998665444332223444444445 89999999999999999999887765
No 137
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=83.96 E-value=2 Score=54.13 Aligned_cols=191 Identities=17% Similarity=0.206 Sum_probs=123.8
Q ss_pred hHHHHHHHHhhhhccccccchHHHHHHHHHhhhcCCchhhHHHHHHHHHHhhcCCCChhHHHHHhhhccCCcch-hhhhh
Q 000730 983 EVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI-HIHQY 1061 (1326)
Q Consensus 983 ~~~~i~~~L~~~L~s~~~~~Ri~a~aflsELl~~~~~~~~l~~~~i~~L~~~l~D~~~~VR~lsLrGLgnl~~~-~v~~~ 1061 (1326)
....|+-.+.++..+++..-|+.=.--+-.++.+- ..+.+.+++.-.+..++.|.|+++|...++.+..++.- --+..
T Consensus 327 yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~L-t~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~~L 405 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHL-TKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKRNL 405 (690)
T ss_pred cccchhhhHHHHhcCcchHHHHHHHHhHHHHhhhc-CHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchhhh
Confidence 44556666667777766666655444444444331 23456677889999999999999999999999887753 11123
Q ss_pred HHHHHHHHHhhccCCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhh-hcCcCcCCChHHHHHHHHHHHHhhhcCCCc
Q 000730 1062 ATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVR-LRNLQVSMNVKMRRNAFAAFGALSNFGVGS 1140 (1326)
Q Consensus 1062 ~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~l~~~-lrpffede~~~vR~aAi~LfG~L~~~~~~~ 1140 (1326)
.-.++..+...--|.+..++--.--+|++|-..+....-..++..=-.| +|..| ..=|.++...|-....+ -
T Consensus 406 n~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~R~~vL~~aftralkdpf----~paR~a~v~~l~at~~~---~ 478 (690)
T KOG1243|consen 406 NGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASVRKRVLASAFTRALKDPF----VPARKAGVLALAATQEY---F 478 (690)
T ss_pred cHHHHHHHHhhCccccCcccccceeeecccccccchhhhccccchhhhhhhcCCC----CCchhhhhHHHhhcccc---c
Confidence 3445555555555555668888888888888876544333333222222 33333 45678888777776653 2
Q ss_pred chHHHHHHHHhhhhHHHHhccCCChhHHHHHHHHHHhhchhhhh
Q 000730 1141 QREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEI 1184 (1326)
Q Consensus 1141 ~~~~~~eQv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL~~ 1184 (1326)
.......||+-+++|+.. |++..|+..+..++..+=.-++-
T Consensus 479 ~~~~va~kIlp~l~pl~v---d~e~~vr~~a~~~i~~fl~kl~~ 519 (690)
T KOG1243|consen 479 DQSEVANKILPSLVPLTV---DPEKTVRDTAEKAIRQFLEKLEK 519 (690)
T ss_pred chhhhhhhcccccccccc---CcccchhhHHHHHHHHHHhhhhh
Confidence 334456777777777765 99999999999988887655444
No 138
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.97 E-value=25 Score=40.74 Aligned_cols=61 Identities=25% Similarity=0.391 Sum_probs=38.5
Q ss_pred HHHhhcCCCChhHHHHHhhhccCCcch---hhhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHh
Q 000730 1030 ALCRHVSDESPTVRGLCLRGLVQIPSI---HIHQYATQVLSVILALLDDLDESVQLTAVSCLLTIL 1092 (1326)
Q Consensus 1030 ~L~~~l~D~~~~VR~lsLrGLgnl~~~---~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL 1092 (1326)
-+-+-+.++||.||+.|++-+.++... -..+|....+..+...+.|.+. .-.|..+|.++-
T Consensus 7 elv~ll~~~sP~v~~~AV~~l~~lt~~~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnls 70 (353)
T KOG2973|consen 7 ELVELLHSLSPPVRKAAVEHLLGLTGRGLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLS 70 (353)
T ss_pred HHHHHhccCChHHHHHHHHHHhhccccchhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHH
Confidence 344556999999999999877666432 2345566667777777666554 334444444443
No 139
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=81.64 E-value=27 Score=40.50 Aligned_cols=72 Identities=13% Similarity=-0.044 Sum_probs=56.8
Q ss_pred HHHHHHHhhcCCChh-HHHHHHHHHhhhhccCchhhhhhccHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHH
Q 000730 1225 YMGSTIQAFEAPWPI-IQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLLKS 1298 (1326)
Q Consensus 1225 ~l~~~l~y~kS~~~~-IR~aA~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k~ 1298 (1326)
.+.+...|+++..++ +=+-|..=||..+..+| +-+.-++.-.+-..+.. |...|||.||--|-+|+..+-.+
T Consensus 357 i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~P-E~~~vl~Kyg~k~~im~-L~nh~d~~VkfeAl~a~q~~i~~ 429 (432)
T COG5231 357 IVKVLKKYLQSNNPNTWICVACSDIFQLVRASP-EINAVLSKYGVKEIIMN-LINHDDDDVKFEALQALQTCISS 429 (432)
T ss_pred HHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCc-hHHHHHHHhhhHHHHHH-HhcCCCchhhHHHHHHHHHHHhh
Confidence 456778899998888 56668888999998887 34444566677778888 88999999999999998776544
No 140
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=81.36 E-value=6.8 Score=48.12 Aligned_cols=143 Identities=16% Similarity=0.159 Sum_probs=82.4
Q ss_pred ccCCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCc-CcCCChHHHHHHHHHHHHhhhcCCCcchHHHHHHHHh
Q 000730 1073 LDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNL-QVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHA 1151 (1326)
Q Consensus 1073 L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~l~~~lrpf-fede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~ 1151 (1326)
+.|.|+..+...|-+++------+.-++ .-++.|. ..|.+++||.+|.-++|=++= + +. .
T Consensus 525 l~d~ds~lRy~G~fs~alAy~GTgn~~v-------v~~lLh~avsD~nDDVrRAAViAlGfvc~--~--D~--------~ 585 (926)
T COG5116 525 LYDKDSILRYNGVFSLALAYVGTGNLGV-------VSTLLHYAVSDGNDDVRRAAVIALGFVCC--D--DR--------D 585 (926)
T ss_pred hcCchHHhhhccHHHHHHHHhcCCcchh-------HhhhheeecccCchHHHHHHHHheeeeEe--c--Cc--------c
Confidence 4444555555555555443322222222 2233344 689999999999999998763 1 11 2
Q ss_pred hhhHHHHhccCC-ChhHHHHHHHHHHhhchhhhhhhhhhhccccCCCCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHH
Q 000730 1152 MLPRLILHIYDD-DLSVRQACRNTLKQVAPFMEIGVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTI 1230 (1326)
Q Consensus 1152 ~LvpLLlHL~D~-~~~V~~ack~tL~~~a~lL~~~l~~lf~~~~~~~~~~l~~~~f~~~i~k~L~~~~~~~~~~~l~~~l 1230 (1326)
.+|.-+--|.|. |+-||-....+|+..+.- .|. ....++...
T Consensus 586 ~lv~tvelLs~shN~hVR~g~AvaLGiacag---------------~G~-----~~a~diL~~----------------- 628 (926)
T COG5116 586 LLVGTVELLSESHNFHVRAGVAVALGIACAG---------------TGD-----KVATDILEA----------------- 628 (926)
T ss_pred hhhHHHHHhhhccchhhhhhhHHHhhhhhcC---------------Ccc-----HHHHHHHHH-----------------
Confidence 445555555555 889999999998874431 111 122233332
Q ss_pred HhhcCCChhHHHHHHHHHhhhhccCchhhhhhccHHHHHHHHHH
Q 000730 1231 QAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVV 1274 (1326)
Q Consensus 1231 ~y~kS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~ 1274 (1326)
..+++...+|++|++-.|+++-.-.++.-.+ +..+.+.+..
T Consensus 629 -L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~--v~~I~k~f~~ 669 (926)
T COG5116 629 -LMYDTNDFVRQSAMIAVGMILMQCNPELNPN--VKRIIKKFNR 669 (926)
T ss_pred -HhhCcHHHHHHHHHHHHHHHHhhcCcccChh--HHHHHHHHHH
Confidence 3367888899999999997754444343322 2444444444
No 141
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.52 E-value=2.1e+02 Score=37.42 Aligned_cols=109 Identities=17% Similarity=0.191 Sum_probs=67.9
Q ss_pred HHHHHHHHHhccCCChhhHHHHHHHHHHHHhhhccccccc------chhhHHHHHHHHHhhcCcHHHHHHHHHHHHHHhh
Q 000730 718 VATLHSCTTAICDRTKQSAEGAIQAVVEFVTKRGNELSET------DVSRTTQSLLSAAVHITDKHLRLETLGAISCLAE 791 (1326)
Q Consensus 718 ~~ll~~ll~~L~d~~~~~~~~A~~~L~~~l~~rg~~L~e~------~V~~I~~~I~~~l~~i~~~~~r~~~l~ai~~La~ 791 (1326)
.++|..++..+.--+-++...|.+++..++..||.++... -|+.+++.+.. ..+-+|..++=-++.|.+
T Consensus 121 qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~D-----srE~IRNe~iLlL~eL~k 195 (970)
T KOG0946|consen 121 QDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRD-----SREPIRNEAILLLSELVK 195 (970)
T ss_pred chhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhh-----hhhhhchhHHHHHHHHHc
Confidence 3566666677766677888999999999999999998533 14444444433 234467776767777765
Q ss_pred ccC--ch-hHHHHHHhhhcccchhhhhccccCCCCchhHHHHhhcCccc-----HHHHHHHHHHHHccC
Q 000730 792 NTN--SK-IVFNEVLATAGKDIVTKDISRLRGGWPMQDAFHAFSQHAVL-----SFLFLEHLISALNQT 852 (1326)
Q Consensus 792 ~h~--~~-vV~~~Ll~~~~~~~~~~~~~~L~~~lP~d~~W~aLa~d~~l-----~~~vL~~LL~~L~~~ 852 (1326)
-.+ ++ |+|+.. ++|++.++..++.+ +..-|-.|.-.|+++
T Consensus 196 ~n~~IQKlVAFENa---------------------FerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N 243 (970)
T KOG0946|consen 196 DNSSIQKLVAFENA---------------------FERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNN 243 (970)
T ss_pred cCchHHHHHHHHHH---------------------HHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhC
Confidence 543 33 444433 45678888877733 233344444444444
No 142
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=78.59 E-value=1.6e+02 Score=40.99 Aligned_cols=292 Identities=14% Similarity=0.143 Sum_probs=165.0
Q ss_pred HHHHHHHHHHHhhcchHHHHHHHhcCCCCChhhHHHHHHHHHHHHhhcCchhHHHHHHHHhhhhccccccchHHHHHHHH
Q 000730 932 AILTSFQAFCECVGDLEMRKILARDGEQNDKEKWINLIGDVAGCVSIKRPKEVQTICLILTKSINRQQRFQREAAAAALS 1011 (1326)
Q Consensus 932 ~aleAlk~ll~~~g~~~~~~~L~~~g~W~~~e~~~~gV~lLAr~m~~~~~~~~~~i~~~L~~~L~s~~~~~Ri~a~afls 1011 (1326)
..++-||.+..| .+.|+.++ .-.+++.-+|.+++.. .+|++++..-|+-.+.-++
T Consensus 21 ell~rLk~l~~~------l~~~~qd~------~~~~~~~pl~~~l~~~-------------~~L~h~d~dvrllvacCvs 75 (1266)
T KOG1525|consen 21 ELLKRLKKLANC------LASLDQDN------LDLASLLPLADHLIKD-------------FLLKHKDKDVRLLVACCVS 75 (1266)
T ss_pred HHHHHHHHHHHH------HhhcccCc------hhHHHHHHHHHHHhhH-------------HHhcCCCcChhHHHHHHHH
Confidence 566777766543 33344432 4556777788877652 3577888889999999999
Q ss_pred Hhhhc--CCc---hhhHHHHHHHHHHhhcCCCChhHHHHHhhhccCCcchhhhhhH---HHH---HHHHHhhccCCChhH
Q 000730 1012 EFVRY--SGG---FDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSIHIHQYA---TQV---LSVILALLDDLDESV 1080 (1326)
Q Consensus 1012 ELl~~--~~~---~~~l~~~~i~~L~~~l~D~~~~VR~lsLrGLgnl~~~~v~~~~---~~l---L~all~~L~d~d~~V 1080 (1326)
|+++- |.. .. -++.+...+.+ .++|||......-.+|. .++ -.+++--+.| .++.
T Consensus 76 eilRi~aPeaPy~~~-~lkdIf~~~~~------------q~~gL~d~~sp~f~r~~~lletl~~~k~~l~~~l~d-~~e~ 141 (1266)
T KOG1525|consen 76 EILRIYAPEAPYTDE-QLKDIFQLILS------------QFSGLGDVESPYFKRYFYLLETLAKVKFCLLMLLED-CQEL 141 (1266)
T ss_pred HHHHHhCCCCCCcHH-HHHHHHHHHHH------------HHhhccCCCCcchhhHHHHHHHHHHhHHHheeeccc-hHHH
Confidence 99993 322 22 33333333322 34688877543211111 111 1122222221 2445
Q ss_pred HHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCcCCChHHHHHHHHHHHHhhhcCCCcchHHHHHHHHhhhhHHHHhc
Q 000730 1081 QLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHI 1160 (1326)
Q Consensus 1081 ~leAm~~L~~lL~~l~~~~~~~~l~~l~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~LvpLLlHL 1160 (1326)
+-+-....=+++..--.+.+-. =+.+++.|..-..... . ..|.-++.||
T Consensus 142 ~~~~f~~f~d~~~~~~~~~v~~-----------------------~~~i~~~li~e~d~v~-----~---e~L~~ll~~l 190 (1266)
T KOG1525|consen 142 VHELFRTFFDLARKGHPKKVFN-----------------------MLDIAIMLITEEDTVQ-----S---ELLDVLLENL 190 (1266)
T ss_pred HHHHHHHHHHHHhccccHHHHH-----------------------HHHHHHHHHHhhccch-----H---HHHHHHHHHh
Confidence 5555555555553322221111 1222222222111100 0 2333344455
Q ss_pred cCCChh----HHHHHHHHHHhhchhhhhhhhhhhccccCCCC-CCCChHHHHHHHHHHHHHhCcchHHHHHHHHHHhhcC
Q 000730 1161 YDDDLS----VRQACRNTLKQVAPFMEIGVYGIFNSHCFNSD-HRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEA 1235 (1326)
Q Consensus 1161 ~D~~~~----V~~ack~tL~~~a~lL~~~l~~lf~~~~~~~~-~~l~~~~f~~~i~k~L~~~~~~~~~~~l~~~l~y~kS 1235 (1326)
--+.++ -..-+..-+.+||.-+...+...++....... ..++-..++.++.-.|-.--|+.+.--+-+.-.-+.|
T Consensus 191 v~~~~~~~~~a~~la~~li~~~a~~~~~~i~~f~~~~~~~~~s~~~~~~~~~he~i~~L~~~~p~ll~~vip~l~~eL~s 270 (1266)
T KOG1525|consen 191 VKPGRDTIKEADKLASDLIERCADNLEDTIANFLNSCLTEYKSRQSSLKIKYHELILELWRIAPQLLLAVIPQLEFELLS 270 (1266)
T ss_pred ccCCCCccHHHHHHHHHHHHHhhhhhchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHhc
Confidence 444443 33334455778887666644444444322211 3334344555666666667788888888888888999
Q ss_pred CChhHHHHHHHHHhhhhccCchhhhhhccHHHHHHHHHHHhccCCChhHHHHHHHHHHHHH
Q 000730 1236 PWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLL 1296 (1326)
Q Consensus 1236 ~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~ 1296 (1326)
.+...|--|+..+|.+......+.- -....++.++.. =..|-++.||..+.+......
T Consensus 271 e~~~~Rl~a~~lvg~~~~~~~~~l~--~~~~~~~~~fl~-r~~D~~~~vR~~~v~~~~~~l 328 (1266)
T KOG1525|consen 271 EQEEVRLKAVKLVGRMFSDKDSQLS--ETYDDLWSAFLG-RFNDISVEVRMECVESIKQCL 328 (1266)
T ss_pred chHHHHHHHHHHHHHHHhcchhhhc--ccchHHHHHHHH-HhccCChhhhhhHHHHhHHHH
Confidence 9999999999999998876654333 223567888888 489999999999888766554
No 143
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=77.67 E-value=14 Score=46.49 Aligned_cols=130 Identities=16% Similarity=0.087 Sum_probs=90.7
Q ss_pred HHHHHHHHHHhhcCchhHHHHHHHHhhhhccccccchHHHHHHHHHhhhcCCch----h---hHHHHHHHHHHhhcCCCC
Q 000730 967 NLIGDVAGCVSIKRPKEVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGGF----D---SLLEQMVEALCRHVSDES 1039 (1326)
Q Consensus 967 ~gV~lLAr~m~~~~~~~~~~i~~~L~~~L~s~~~~~Ri~a~aflsELl~~~~~~----~---~l~~~~i~~L~~~l~D~~ 1039 (1326)
..|.+-.--++.-.|..+-+=++++..+|+|..-.-|..-+-+++.++-+.... + .-+..++..|.+++.|.+
T Consensus 280 k~islFl~kls~l~p~i~lrq~~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~ 359 (1128)
T COG5098 280 KDISLFLNKLSELSPGIMLRQYEHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTY 359 (1128)
T ss_pred HHHHHHHHHHhhcCchHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccc
Confidence 334444444445455555566788889999888888876665555554432111 1 123458899999999999
Q ss_pred hhHHHHHhhhccCCcc--hhhhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhccCC
Q 000730 1040 PTVRGLCLRGLVQIPS--IHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSS 1096 (1326)
Q Consensus 1040 ~~VR~lsLrGLgnl~~--~~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~ 1096 (1326)
|.+|--+++|+..+-. .+-..-+..+..-....+.|...-|+-.|+..++++|-.=+
T Consensus 360 py~RtKalqv~~kifdl~sk~~~~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~~HP 418 (1128)
T COG5098 360 PYTRTKALQVLEKIFDLNSKTVGRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLMRHP 418 (1128)
T ss_pred hHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCC
Confidence 9999999999986642 13333345667777788888888999999999999986543
No 144
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=77.05 E-value=58 Score=38.27 Aligned_cols=161 Identities=16% Similarity=0.112 Sum_probs=84.6
Q ss_pred HHHHHHhhccCCChhHHHHHHHHHHHHhccCCcCCcc---hhHHhHHhhhcCcCcCCChHHHHHHHHHHHHhhhcCCCcc
Q 000730 1065 VLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVE---PILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQ 1141 (1326)
Q Consensus 1065 lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~---~~l~~l~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~ 1141 (1326)
....++..++..|..+...|...|+.++..-+..... ..+..+..-++......+.+++..|+.+++.|.+. ...
T Consensus 106 ~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~--~~~ 183 (312)
T PF03224_consen 106 PYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRS--KEY 183 (312)
T ss_dssp -HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTS--HHH
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCc--chh
Confidence 4556666677778889999999999999887666555 45566666666666677788889999999999972 223
Q ss_pred hHHHHH-HHHhhhhHHHHhcc-CCChhHHHHHHHHHHhhchhhhh--hhhhhhccccCCCCCCCChHHHHHHHHHHHHHh
Q 000730 1142 REAFLE-QIHAMLPRLILHIY-DDDLSVRQACRNTLKQVAPFMEI--GVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQH 1217 (1326)
Q Consensus 1142 ~~~~~e-Qv~~~LvpLLlHL~-D~~~~V~~ack~tL~~~a~lL~~--~l~~lf~~~~~~~~~~l~~~~f~~~i~k~L~~~ 1217 (1326)
+..|.+ ...+.+++++--.. ..+....+- .+-..-|.=+|-- +..+-+.++ | ++..++..+...
T Consensus 184 R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql-~Y~~ll~lWlLSF~~~~~~~~~~~---------~--~i~~L~~i~~~~ 251 (312)
T PF03224_consen 184 RQVFWKSNGVSPLFDILRKQATNSNSSGIQL-QYQALLCLWLLSFEPEIAEELNKK---------Y--LIPLLADILKDS 251 (312)
T ss_dssp HHHHHTHHHHHHHHHHHH---------HHHH-HHHHHHHHHHHTTSHHHHHHHHTT---------S--HHHHHHHHHHH-
T ss_pred HHHHHhcCcHHHHHHHHHhhcccCCCCchhH-HHHHHHHHHHHhcCHHHHHHHhcc---------c--hHHHHHHHHHhc
Confidence 333333 33334444331000 122222222 2222222211111 222222221 1 667888888888
Q ss_pred CcchHHHHHHHHH-HhhcCCChh
Q 000730 1218 FPSRIDSYMGSTI-QAFEAPWPI 1239 (1326)
Q Consensus 1218 ~~~~~~~~l~~~l-~y~kS~~~~ 1239 (1326)
-.+|+-...-.++ +.+..+...
T Consensus 252 ~KEKvvRv~la~l~Nl~~~~~~~ 274 (312)
T PF03224_consen 252 IKEKVVRVSLAILRNLLSKAPKS 274 (312)
T ss_dssp -SHHHHHHHHHHHHHTTSSSSTT
T ss_pred ccchHHHHHHHHHHHHHhccHHH
Confidence 8999988855444 477766665
No 145
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=76.13 E-value=46 Score=39.42 Aligned_cols=179 Identities=20% Similarity=0.206 Sum_probs=103.8
Q ss_pred cccccchHHHHHHHHHhhhcCCchhhHHHH-HHHHHHhhcCCCChhHHHHHhhhccCCcch------hhhhhHHHHHHHH
Q 000730 997 RQQRFQREAAAAALSEFVRYSGGFDSLLEQ-MVEALCRHVSDESPTVRGLCLRGLVQIPSI------HIHQYATQVLSVI 1069 (1326)
Q Consensus 997 s~~~~~Ri~a~aflsELl~~~~~~~~l~~~-~i~~L~~~l~D~~~~VR~lsLrGLgnl~~~------~v~~~~~~lL~al 1069 (1326)
+..-.++..|.--+-+++.+-.....+..- -+..+...++++++.+|++|.+=+|..... .+-.+ -.++.+
T Consensus 94 s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~--~~L~~L 171 (342)
T KOG2160|consen 94 SVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIEL--GALSKL 171 (342)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHc--ccHHHH
Confidence 444555777776677776653332222211 223444588999999999999999977643 22222 246666
Q ss_pred HhhccCCC-hhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCcC--CChHHHHHHHHHHHHhhhcCCCcchHHHH
Q 000730 1070 LALLDDLD-ESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVS--MNVKMRRNAFAAFGALSNFGVGSQREAFL 1146 (1326)
Q Consensus 1070 l~~L~d~d-~~V~leAm~~L~~lL~~l~~~~~~~~l~~l~~~lrpffed--e~~~vR~aAi~LfG~L~~~~~~~~~~~~~ 1146 (1326)
+..|...+ ..+.-.|+.+++.++..-....-.-+.++=..-|++..++ .+..++..|+.|++.|..-.. ...+.+.
T Consensus 172 l~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~-s~~d~~~ 250 (342)
T KOG2160|consen 172 LKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDK-SDEDIAS 250 (342)
T ss_pred HHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhh-hhhhHHH
Confidence 66666433 4588999999999988644332222222223455777887 677788899999999997322 2223333
Q ss_pred HHHH-hhhhHHHHhccCCChhHHHHHHHHHHhhchh
Q 000730 1147 EQIH-AMLPRLILHIYDDDLSVRQACRNTLKQVAPF 1181 (1326)
Q Consensus 1147 eQv~-~~LvpLLlHL~D~~~~V~~ack~tL~~~a~l 1181 (1326)
...+ +.++-+..-+ +.++..+|-.++......
T Consensus 251 ~~~f~~~~~~l~~~l---~~~~~e~~l~~~l~~l~~ 283 (342)
T KOG2160|consen 251 SLGFQRVLENLISSL---DFEVNEAALTALLSLLSE 283 (342)
T ss_pred HhhhhHHHHHHhhcc---chhhhHHHHHHHHHHHHH
Confidence 2211 2222222222 335666665555554443
No 146
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=76.09 E-value=2e+02 Score=35.32 Aligned_cols=132 Identities=13% Similarity=0.157 Sum_probs=97.4
Q ss_pred hhhHHHHHHHHHHHHhhcCchhHHHHHHHHhhhhccccccchHHHHHHHHHhhhc----------CCc----hhhHHHHH
Q 000730 962 KEKWINLIGDVAGCVSIKRPKEVQTICLILTKSINRQQRFQREAAAAALSEFVRY----------SGG----FDSLLEQM 1027 (1326)
Q Consensus 962 ~e~~~~gV~lLAr~m~~~~~~~~~~i~~~L~~~L~s~~~~~Ri~a~aflsELl~~----------~~~----~~~l~~~~ 1027 (1326)
.....+...-++++++-+..+....++..++..+.+ .+..+.+|-+| .-++.. +.. .+-+...+
T Consensus 247 ~~~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~~lL~~-~~~g~~aA~~f-~il~~d~~~~l~~~~~a~vklLykQR~F~~~ 324 (415)
T PF12460_consen 247 RPQALEILIWITKALVMRGHPLATELLDKLLELLSS-PELGQQAAKAF-GILLSDSDDVLNKENHANVKLLYKQRFFTQV 324 (415)
T ss_pred hHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhCC-hhhHHHHHHHH-hhHhcCcHHhcCccccchhhhHHhHHHHHHH
Confidence 344555566688998888888899999999999988 22234444433 333322 111 23334557
Q ss_pred HHHHHhhcCCCChhHHHHHhhhccCCcch----hhhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhccC
Q 000730 1028 VEALCRHVSDESPTVRGLCLRGLVQIPSI----HIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSS 1095 (1326)
Q Consensus 1028 i~~L~~~l~D~~~~VR~lsLrGLgnl~~~----~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l 1095 (1326)
+-.|.++.++.+...|.-.+.||+++..+ -+..+.+.++|-++.+|+-.|..+...++.+|..++..-
T Consensus 325 ~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 325 LPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA 396 (415)
T ss_pred HHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence 78889999988888999999999977644 346677999999999998888899999999999999864
No 147
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=74.59 E-value=3.5 Score=52.03 Aligned_cols=63 Identities=16% Similarity=0.091 Sum_probs=50.3
Q ss_pred HHHHHHHHh-hcCCChhHHHHHHHHHhhhhccCchhhhhhccHHHHHHHHHHHhccCCChhHHHHHHHHHHHHH
Q 000730 1224 SYMGSTIQA-FEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLL 1296 (1326)
Q Consensus 1224 ~~l~~~l~y-~kS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~ 1296 (1326)
.-+.+.+.| ..++..++|++|+.-+||++..-+ +++...+.. |...-.|-||..||-|||..+
T Consensus 554 kair~lLh~aVsD~nDDVrRaAVialGFVl~~dp---------~~~~s~V~l-Lses~N~HVRyGaA~ALGIaC 617 (929)
T KOG2062|consen 554 KAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDP---------EQLPSTVSL-LSESYNPHVRYGAAMALGIAC 617 (929)
T ss_pred hhHHHhhcccccccchHHHHHHHHHheeeEecCh---------hhchHHHHH-HhhhcChhhhhhHHHHHhhhh
Confidence 345556666 778999999999999999887655 444555555 778899999999999999876
No 148
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=74.46 E-value=36 Score=40.54 Aligned_cols=186 Identities=18% Similarity=0.109 Sum_probs=104.0
Q ss_pred hHHHHHHHHhhhhcc-ccccchHHHH-HHHHHhhhcCCchhhHHHHHHHHHHhhcCCCChhHHHHHhhhccCCcc----h
Q 000730 983 EVQTICLILTKSINR-QQRFQREAAA-AALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPS----I 1056 (1326)
Q Consensus 983 ~~~~i~~~L~~~L~s-~~~~~Ri~a~-aflsELl~~~~~~~~l~~~~i~~L~~~l~D~~~~VR~lsLrGLgnl~~----~ 1056 (1326)
.-..|+..+.|++.. .+|.-....+ +|+..+..- ...+.+.+++.+.++++|..+.||+.-++.+|++.. .
T Consensus 19 ~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~---~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~ 95 (339)
T PF12074_consen 19 LSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFL---SSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNS 95 (339)
T ss_pred hHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh---CcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCc
Confidence 567899999999887 3344344444 333333322 345567889999999999999999999999998753 3
Q ss_pred hhhhhHHHHHHHHHhhccCCC----hh----HHHHHHHHHHHHhccCCcC---------------CcchhHHhHHhhhcC
Q 000730 1057 HIHQYATQVLSVILALLDDLD----ES----VQLTAVSCLLTILKSSSKD---------------AVEPILLNLSVRLRN 1113 (1326)
Q Consensus 1057 ~v~~~~~~lL~all~~L~d~d----~~----V~leAm~~L~~lL~~l~~~---------------~~~~~l~~l~~~lrp 1113 (1326)
....+...+++.++..+++.. .. ....|.-.+. +...... .-.+++++- .
T Consensus 96 ~~~~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~--~~~~~~~~~~~~~~~~~~l~~~~kps~ll~~-----k 168 (339)
T PF12074_consen 96 DSLKFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLA--LSSWKLDKIDSKNISFWSLALDPKPSFLLSE-----K 168 (339)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHH--hccccchhhhhhhhhhhhhccCCCcchhcCH-----H
Confidence 444555666666666665421 11 1223333333 1100000 001112111 1
Q ss_pred cCcC-CChHHHHHHHHHHHHhhhcCCCcchHHHHHHHHhhhhHHHHhccCCChhHHHHHHHHHHhhc
Q 000730 1114 LQVS-MNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVA 1179 (1326)
Q Consensus 1114 ffed-e~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a 1179 (1326)
++.+ -.++--...++++-.+..............+..+.++-++.|-+ ..+.||+.|..++.++.
T Consensus 169 vyskl~~~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~-~~~~vR~~A~~~l~~l~ 234 (339)
T PF12074_consen 169 VYSKLASEEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSN-VSWKVRRAALSALKKLY 234 (339)
T ss_pred HHhccCCHhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHH
Confidence 1222 22222233444444444321111222226778899999998732 26789999999988755
No 149
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=74.31 E-value=68 Score=38.82 Aligned_cols=52 Identities=27% Similarity=0.366 Sum_probs=42.0
Q ss_pred CCChhHHHHHHHHHhhhhccCchhhhhhccHHHHHHHHHHHhccCCChhHHHHHHHHH
Q 000730 1235 APWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSL 1292 (1326)
Q Consensus 1235 S~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL 1292 (1326)
+..+-+|+.|.+|+-.+-+.++.++. ..++..+.. .+++++..|+.-||.|+
T Consensus 319 ~~~piLka~aik~~~~Fr~~l~~~~l-----~~~~~~l~~-~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 319 NSHPILKADAIKFLYTFRNQLPKEQL-----LQIFPLLVN-HLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp -S-HHHHHHHHHHHHHHGGGS-HHHH-----HHHHHHHHH-HTTSS-HHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHHHhhCCHHHH-----HHHHHHHHH-HhCCCCcchhhhhhhhC
Confidence 56788999999999988888887765 667888999 89999999999999884
No 150
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=74.23 E-value=18 Score=42.10 Aligned_cols=213 Identities=19% Similarity=0.176 Sum_probs=113.4
Q ss_pred HHHhhhccCCcch-----hhhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhccCCcCCcchhHHh--HHhhhcCcCc
Q 000730 1044 GLCLRGLVQIPSI-----HIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLN--LSVRLRNLQV 1116 (1326)
Q Consensus 1044 ~lsLrGLgnl~~~-----~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~--l~~~lrpffe 1116 (1326)
--|.=+|.|++++ |+--. ...+|-++..|.+.+.+|.-.|+.+|++|-...+ +.+.+.++ ....+..+|.
T Consensus 133 fEAaWalTNiaSGtt~QTkvVvd-~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~--~~RD~vL~~galeplL~ll~ 209 (526)
T COG5064 133 FEAAWALTNIASGTTQQTKVVVD-AGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSE--GCRDYVLQCGALEPLLGLLL 209 (526)
T ss_pred HHHHHHHhhhccCcccceEEEEe-CCchHHHHHHHcCchHHHHHHHHHHhccccCCch--hHHHHHHhcCchHHHHHHHH
Confidence 3445567788765 32211 2346788888999899999999999999975322 22222111 0011112233
Q ss_pred CCCh--HHHHHHHHHHHHhhhcCCCcchHHHHHHHHhhhhHHHHhccCCChhHHHHHHHHHHhhchhhhhhhhhhhcccc
Q 000730 1117 SMNV--KMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEIGVYGIFNSHC 1194 (1326)
Q Consensus 1117 de~~--~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL~~~l~~lf~~~~ 1194 (1326)
.... .+=..|-=.+..|++ |+...+=-.-+.++++-|---+.-.+++|.--+-.|+--+.
T Consensus 210 ss~~~ismlRn~TWtLSNlcR---GknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYls--------------- 271 (526)
T COG5064 210 SSAIHISMLRNATWTLSNLCR---GKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLS--------------- 271 (526)
T ss_pred hccchHHHHHHhHHHHHHhhC---CCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhc---------------
Confidence 3222 222333444556655 55544433444455544433334445555443323332211
Q ss_pred CCCCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHHhhcCCChhHHHHHHHHHhhhhccCchhhhhhccHHHHHHHHHH
Q 000730 1195 FNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVV 1274 (1326)
Q Consensus 1195 ~~~~~~l~~~~f~~~i~k~L~~~~~~~~~~~l~~~l~y~kS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~ 1274 (1326)
||. . + .+-..+-.-.|.+ .+..+.+|...|..-|..-+|-++--.+.|-.--++ -...++|..
T Consensus 272 --Dg~-~---E---~i~avld~g~~~R-------LvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~-~G~L~a~~~ 334 (526)
T COG5064 272 --DGP-N---E---KIQAVLDVGIPGR-------LVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIIN-CGALKAFRS 334 (526)
T ss_pred --cCc-H---H---HHHHHHhcCCcHH-------HHHHhcCccccccCHHHHhhcCeeecCccceehhee-cccHHHHHH
Confidence 110 0 0 1111112223334 234555577778777888899887666544322222 225678888
Q ss_pred HhccCCChhHHHHHHHHHHHH
Q 000730 1275 KLSQSADAIVRATCSSSLGWL 1295 (1326)
Q Consensus 1275 ~Ll~Dpdp~VR~~Aa~aL~~l 1295 (1326)
|+..|-..+|+-|..|++.+
T Consensus 335 -lLs~~ke~irKEaCWTiSNI 354 (526)
T COG5064 335 -LLSSPKENIRKEACWTISNI 354 (526)
T ss_pred -HhcChhhhhhhhhheeeccc
Confidence 78889889999887776553
No 151
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=73.05 E-value=1.1e+02 Score=37.13 Aligned_cols=145 Identities=15% Similarity=0.132 Sum_probs=83.3
Q ss_pred HHHHHHHHhhcCCCChhHHHHHhhhccCCcch--hhhhhHHHHHH-HHHhhccCC--ChhHHHHHHHHHHHHhccCCcCC
Q 000730 1025 EQMVEALCRHVSDESPTVRGLCLRGLVQIPSI--HIHQYATQVLS-VILALLDDL--DESVQLTAVSCLLTILKSSSKDA 1099 (1326)
Q Consensus 1025 ~~~i~~L~~~l~D~~~~VR~lsLrGLgnl~~~--~v~~~~~~lL~-all~~L~d~--d~~V~leAm~~L~~lL~~l~~~~ 1099 (1326)
...+..+...+-++++.||..++|-+--+... -+..+.+.=++ -+.-+|+-. .+-=+.+|+.-.+++++.- ++
T Consensus 24 ~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~--~~ 101 (371)
T PF14664_consen 24 SFFGERIQCMLLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIK--KG 101 (371)
T ss_pred HHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhc--CC
Confidence 33444444344455599999999977644322 11111110011 123333332 2345667888888888763 24
Q ss_pred cchhHHhHHhhhcCcCcCCChHHHHHHHHHHHHhhhcCCCcchHHHHHHHHhhhhHHHHhccCCChhHHHHHHHHHHh
Q 000730 1100 VEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQ 1177 (1326)
Q Consensus 1100 ~~~~l~~l~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~LvpLLlHL~D~~~~V~~ack~tL~~ 1177 (1326)
...+...++..|-..-|++++.+|..|++.+.+++-.... +.- -.+++-+|+--+.|...+++..+-.++..
T Consensus 102 ~~~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~-----lv~-~~gG~~~L~~~l~d~~~~~~~~l~~~lL~ 173 (371)
T PF14664_consen 102 PKEIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPE-----LVA-ECGGIRVLLRALIDGSFSISESLLDTLLY 173 (371)
T ss_pred cccCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHH-----HHH-HcCCHHHHHHHHHhccHhHHHHHHHHHHH
Confidence 4455666777777778889999999999999998851100 000 01344555555667666666666555554
No 152
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=72.91 E-value=12 Score=46.33 Aligned_cols=87 Identities=11% Similarity=0.106 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHhCcc---hHHHHHHHHHHhhcCCChhHHHHHHHHHhhhhccCchhhhhhccHHHHHHHHHHHhcc---C
Q 000730 1206 FVRDLTRQFVQHFPS---RIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQ---S 1279 (1326)
Q Consensus 1206 f~~~i~k~L~~~~~~---~~~~~l~~~l~y~kS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~---D 1279 (1326)
|+..|..|.+++.|+ -+.-++...+..+.|+...+|-.....+..+..... ++| |.+++.|..+|.+ |
T Consensus 70 fl~~f~~Y~~~~dpeg~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~-----eID-e~l~N~L~ekl~~R~~D 143 (885)
T COG5218 70 FLKRFFEYDMPDDPEGEELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVR-----EID-EVLANGLLEKLSERLFD 143 (885)
T ss_pred HHHHHHHhcCCCChhhhHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcc-----hHH-HHHHHHHHHHHHHHHhc
Confidence 555555555555555 344556666778899999999998888877765553 222 6677776665544 9
Q ss_pred CChhHHHHHHHHHHHHHHH
Q 000730 1280 ADAIVRATCSSSLGWLLKS 1298 (1326)
Q Consensus 1280 pdp~VR~~Aa~aL~~l~k~ 1298 (1326)
.+|.||.-|..+|.+++.-
T Consensus 144 RE~~VR~eAv~~L~~~Qe~ 162 (885)
T COG5218 144 REKAVRREAVKVLCYYQEM 162 (885)
T ss_pred chHHHHHHHHHHHHHHHhc
Confidence 9999999999999999843
No 153
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=72.35 E-value=40 Score=39.62 Aligned_cols=168 Identities=12% Similarity=0.056 Sum_probs=116.0
Q ss_pred HHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCcCCChHHHHHHHHHHHHhhhcCCCcchHHHHHHHHhhhhHHHHh
Q 000730 1080 VQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILH 1159 (1326)
Q Consensus 1080 V~leAm~~L~~lL~~l~~~~~~~~l~~l~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~LvpLLlH 1159 (1326)
|=..|+.+-..|+..++...+..-+-=.+.-|.|||..-+-.||..-+.+|-+-.= +....++-.+...+..|+-=
T Consensus 71 VH~KaLevY~~IF~~ig~~~L~~dl~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~l----pL~~~L~p~l~~li~slLpG 146 (307)
T PF04118_consen 71 VHQKALEVYEYIFERIGPDGLAQDLPIYSPGLFPLFSYASIQVKPQLLDIYEKYYL----PLGPALRPCLKGLILSLLPG 146 (307)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHhhcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhc----CccHHHHHHHHHHHHHhccc
Confidence 77788888888888888776654444445667899999999999999999988442 22236777777888888888
Q ss_pred ccCCChhHHHHHHHHHHhhchhhhhhhhhhhccccCCCCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHHhhcCCChh
Q 000730 1160 IYDDDLSVRQACRNTLKQVAPFMEIGVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPI 1239 (1326)
Q Consensus 1160 L~D~~~~V~~ack~tL~~~a~lL~~~l~~lf~~~~~~~~~~l~~~~f~~~i~k~L~~~~~~~~~~~l~~~l~y~kS~~~~ 1239 (1326)
|.|++.++-..+-..+..+... .++ +.|+..+|.+++. .+.
T Consensus 147 Lede~sE~~~~~~~ll~~l~~~-------------v~~------~~F~~~lwl~ii~--------------------sp~ 187 (307)
T PF04118_consen 147 LEDEGSEFFDRTLKLLDKLKEA-------------VGD------KYFWQCLWLCIIT--------------------SPS 187 (307)
T ss_pred cccCCchHHHHHHHHHHHHHHh-------------cCh------hHHHHHHHHHHhc--------------------Ccc
Confidence 9999999888776555553321 111 3577777777764 345
Q ss_pred HHHHHHHHHhhhhccCc----------hhhhhhccHHHHHHHHHHHhccCCChhHHHHHHHH
Q 000730 1240 IQANAIYFSSSILCLCD----------DQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSS 1291 (1326)
Q Consensus 1240 IR~aA~~fiG~l~~~~~----------~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~a 1291 (1326)
+|..|-.|+-....... .+..-..+.+.+++++.. .++|++..|++.+-.-
T Consensus 188 ~Rl~al~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Llv~al~~-~L~D~~iLVqR~~LDl 248 (307)
T PF04118_consen 188 RRLGALNYLLRRLPKFQNDELSLSSEEQEYCLGPDPGLLVRALCA-CLEDENILVQRGFLDL 248 (307)
T ss_pred hhHHHHHHHHHhCCcccccccccchHHHHHhcCCCccHHHHHHHH-HhCCchHHHHHHHHHH
Confidence 56666655553322211 111122356779999999 7999999999865443
No 154
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=72.34 E-value=8.9 Score=41.55 Aligned_cols=70 Identities=19% Similarity=0.302 Sum_probs=53.2
Q ss_pred HHHHhhccCC-ChhHHHHHHHHHHHHhccCCcCCcc-hhHHhHHhhhcCcCcCCChHHHHHHHHHHHHhhhc
Q 000730 1067 SVILALLDDL-DESVQLTAVSCLLTILKSSSKDAVE-PILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNF 1136 (1326)
Q Consensus 1067 ~all~~L~d~-d~~V~leAm~~L~~lL~~l~~~~~~-~~l~~l~~~lrpffede~~~vR~aAi~LfG~L~~~ 1136 (1326)
.+++..|+.. +..+....+++|+-++..-.-..+. .++..+...++|+..+-+.+||.+|...+|.|...
T Consensus 104 ~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 104 RGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLSV 175 (182)
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Confidence 3445555543 4567778889999888765544433 56677888889999999999999999999999873
No 155
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=71.62 E-value=22 Score=38.42 Aligned_cols=73 Identities=14% Similarity=0.232 Sum_probs=67.5
Q ss_pred HHHHHHHHhhccCCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCcCCChHHHHHHHHHHHHhhh
Q 000730 1063 TQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSN 1135 (1326)
Q Consensus 1063 ~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~l~~~lrpffede~~~vR~aAi~LfG~L~~ 1135 (1326)
...|+-+.+||.+.+.+-..-|..|..+++..-..+.+-+++.+|..-||.-++..+++|..++..+.-.|+.
T Consensus 37 ~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~ 109 (183)
T PF10274_consen 37 HHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVT 109 (183)
T ss_pred hhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 5679999999999999999999999999999956667889999999999999999999999999999999965
No 156
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=71.39 E-value=29 Score=44.39 Aligned_cols=178 Identities=16% Similarity=0.166 Sum_probs=108.0
Q ss_pred HHHHHHHHhhhhccccccchHHHHHHHHHh---hhcCCchhhHHHHHHHHHHhhcCCCChhHHHHHhhhccCCcch-hhh
Q 000730 984 VQTICLILTKSINRQQRFQREAAAAALSEF---VRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI-HIH 1059 (1326)
Q Consensus 984 ~~~i~~~L~~~L~s~~~~~Ri~a~aflsEL---l~~~~~~~~l~~~~i~~L~~~l~D~~~~VR~lsLrGLgnl~~~-~v~ 1059 (1326)
.+.|+-.+.|.++-++. +=+.+|+-|- |..-...+.+.+.++..|...++|++..++..+|++++.++.. ++.
T Consensus 347 ~~~~~p~l~pi~~~~~~---~~~~l~i~e~mdlL~~Kt~~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~ 423 (700)
T KOG2137|consen 347 GPKMLPALKPIYSASDP---KQALLFILENMDLLKEKTPPEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVP 423 (700)
T ss_pred hhhhhHHHHHHhccCCc---ccchhhHHhhHHHHHhhCChHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHH
Confidence 34444444455544222 2233455553 3333335677788999999999999999999999999998864 443
Q ss_pred hhHHHHHHHHHhhccC-CChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCcCCChHHHHHHHHHHHHhhhcCC
Q 000730 1060 QYATQVLSVILALLDD-LDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGV 1138 (1326)
Q Consensus 1060 ~~~~~lL~all~~L~d-~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~l~~~lrpffede~~~vR~aAi~LfG~L~~~~~ 1138 (1326)
--.+.+++.+...... .+-.|...++-+++.+++.++...+-..++.+...++ -.++.+=..=..+|-.+.-.-.
T Consensus 424 ~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD~~~v~d~~lpi~~~~~----~~dp~iv~~~~~i~~~l~~~~~ 499 (700)
T KOG2137|consen 424 FVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLDKAAVLDELLPILKCIK----TRDPAIVMGFLRIYEALALIIY 499 (700)
T ss_pred HHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhc----CCCcHHHHHHHHHHHHHHhhcc
Confidence 3446677777666333 2346888899999999988887665555544444332 1234555555566766664211
Q ss_pred CcchHHHHHHHHhhhhHHHHhccCCChhHHHHHH
Q 000730 1139 GSQREAFLEQIHAMLPRLILHIYDDDLSVRQACR 1172 (1326)
Q Consensus 1139 ~~~~~~~~eQv~~~LvpLLlHL~D~~~~V~~ack 1172 (1326)
+. ++.+-+||.-.++||.. -+.-.+.+=|+
T Consensus 500 ~g-~ev~~~~VlPlli~ls~---~~~L~~~Qy~~ 529 (700)
T KOG2137|consen 500 SG-VEVMAENVLPLLIPLSV---APSLNGEQYNK 529 (700)
T ss_pred cc-eeeehhhhhhhhhhhhh---cccccHHHHHH
Confidence 11 55666666655555443 33344544443
No 157
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=71.25 E-value=5.1 Score=31.94 Aligned_cols=29 Identities=31% Similarity=0.242 Sum_probs=25.5
Q ss_pred HHHHHHHHHhccCCChhHHHHHHHHHHHHH
Q 000730 1267 QVFGLLVVKLSQSADAIVRATCSSSLGWLL 1296 (1326)
Q Consensus 1267 ~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~ 1296 (1326)
..+..|.. |++++++.||..|+.||+.|-
T Consensus 12 g~i~~Lv~-ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 12 GGIPPLVQ-LLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp THHHHHHH-HTTSSSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHH-HHcCCCHHHHHHHHHHHHHHh
Confidence 36778999 899999999999999999874
No 158
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.80 E-value=8.6 Score=44.37 Aligned_cols=65 Identities=14% Similarity=0.100 Sum_probs=46.1
Q ss_pred HHHHHHhhcCCChhHHHHHH-HHHhhhhccCchhhhhhccHHHHHHHHHHHhccCCChhHHHHHHHHHHHHH
Q 000730 1226 MGSTIQAFEAPWPIIQANAI-YFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLL 1296 (1326)
Q Consensus 1226 l~~~l~y~kS~~~~IR~aA~-~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~ 1296 (1326)
+...+.|++|++|++|.+|+ ..+|+.+. +.+-. .-+.+..++++.. |.+|++| -.-|++||..+.
T Consensus 5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~--~~~~~-~~~~~~~lk~l~q-L~~~~~~--~~~a~~alVnls 70 (353)
T KOG2973|consen 5 LVELVELLHSLSPPVRKAAVEHLLGLTGR--GLQSL-SKYSEALLKDLTQ-LLKDLDP--AEPAATALVNLS 70 (353)
T ss_pred HHHHHHHhccCChHHHHHHHHHHhhcccc--chhhh-ccchhhhHHHHHH-HccCccc--ccHHHHHHHHHH
Confidence 45568899999999999998 44566665 22222 2345777888888 8999999 555666766654
No 159
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=69.42 E-value=15 Score=36.27 Aligned_cols=74 Identities=16% Similarity=0.137 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCcCCChHHHHHHHHHHHHhhhcCCCcchHHHHHHHHhhhhHH
Q 000730 1080 VQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRL 1156 (1326)
Q Consensus 1080 V~leAm~~L~~lL~~l~~~~~~~~l~~l~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~LvpL 1156 (1326)
-...++.+++.++.. ....+.+.+.+|+--|+.-++. +++|..|++....+.+.-...+-.++.+|+...++|.
T Consensus 31 ek~~~i~ai~~lI~~-~g~~i~~a~pQI~acL~saL~~--~eL~~~al~~W~~~i~~L~~~~l~~ll~~~~~~i~~~ 104 (107)
T smart00802 31 EKKRALRSIGFLIKL-MGKHISSALPQIMACLQSALEI--PELRSLALRCWHVLIKTLKEEELGPLLDQIFAAILPL 104 (107)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhCc--hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHh
Confidence 477888899988885 4578999999999999999974 5799999999999999777778888889988888775
No 160
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=68.95 E-value=1.1e+02 Score=42.33 Aligned_cols=212 Identities=16% Similarity=0.150 Sum_probs=126.5
Q ss_pred HHH-HHHHHHHHHHhcCCcchHHHHHH-----hhHHHHHHHHHHhhh-ccc-CCCC-------------------CC---
Q 000730 877 ILQ-AAILALTAFFRGGGKVGKKAVEK-----SYAPVLAALTLQLGS-CHG-LASS-------------------GQ--- 926 (1326)
Q Consensus 877 ~~l-aA~~aL~Ell~~~~~~~~~av~~-----~fp~Lf~aLL~ql~~-~~~-~~~~-------------------~~--- 926 (1326)
-++ ||+|+|--+=+.. |++.++.+ ..|+ |+|+-| .+| .... |.
T Consensus 313 H~lcaA~~~lMK~SFDE--EhR~aM~ELG~LqAIae-----Ll~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~N 385 (2195)
T KOG2122|consen 313 HQLCAALCTLMKLSFDE--EHRHAMNELGGLQAIAE-----LLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVAN 385 (2195)
T ss_pred hhhHHHHHHHHHhhccH--HHHHHHHHhhhHHHHHH-----HHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccc
Confidence 356 9999999888876 89988754 3444 344444 444 2111 10
Q ss_pred ---CChHHHHHHHHHHHHHhh--cchHHHHHHHhcCCCC----ChhhHHHH--HHHHHHHHhhcCc-hhHHHHHHHHhhh
Q 000730 927 ---HEPLRAILTSFQAFCECV--GDLEMRKILARDGEQN----DKEKWINL--IGDVAGCVSIKRP-KEVQTICLILTKS 994 (1326)
Q Consensus 927 ---~~P~~~aleAlk~ll~~~--g~~~~~~~L~~~g~W~----~~e~~~~g--V~lLAr~m~~~~~-~~~~~i~~~L~~~ 994 (1326)
+--.+-+++|+=+-|... ...+|.+-+-++=.|. ..+.+-+. |+.||.|-.+.+- .-++.|+..|+.+
T Consensus 386 Ka~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNL 465 (2195)
T KOG2122|consen 386 KATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNL 465 (2195)
T ss_pred hhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhh
Confidence 111123444443333322 2334445555566797 33333333 5567776665543 6799999999998
Q ss_pred hccccccchHH-----HHHHHHHhhhcC--Cc-------------------------hhhHHHH-HHHHHHhhcCCCChh
Q 000730 995 INRQQRFQREA-----AAAALSEFVRYS--GG-------------------------FDSLLEQ-MVEALCRHVSDESPT 1041 (1326)
Q Consensus 995 L~s~~~~~Ri~-----a~aflsELl~~~--~~-------------------------~~~l~~~-~i~~L~~~l~D~~~~ 1041 (1326)
--...+..+-+ |.+|++-+|.+- .. .+.+.+. ++.+|++.|+..+-+
T Consensus 466 SAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLT 545 (2195)
T KOG2122|consen 466 SAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLT 545 (2195)
T ss_pred hhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceE
Confidence 33333333222 568888877642 00 1233333 778888899988888
Q ss_pred HHHHHhhhccCCcch--hhhhhH--HHHHHHHHhhccCCChhHHHHHHHHHHHHhccC
Q 000730 1042 VRGLCLRGLVQIPSI--HIHQYA--TQVLSVILALLDDLDESVQLTAVSCLLTILKSS 1095 (1326)
Q Consensus 1042 VR~lsLrGLgnl~~~--~v~~~~--~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l 1095 (1326)
|-.=++-.|.|+.-. +..++. ...++-+.+.+..++.-|++.+..+|.++|+.=
T Consensus 546 iVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~R 603 (2195)
T KOG2122|consen 546 IVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFR 603 (2195)
T ss_pred EeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCC
Confidence 888888888898632 221111 122344555566677889999999999999864
No 161
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=68.52 E-value=3.7e+02 Score=35.76 Aligned_cols=329 Identities=15% Similarity=0.201 Sum_probs=153.9
Q ss_pred CCChhhHHHHHHHHHHHHhhcCchhHHHHHHHHhhhhccccccch----HHHHHHHHHhhhcCCchhhHHHHHHHHHHhh
Q 000730 959 QNDKEKWINLIGDVAGCVSIKRPKEVQTICLILTKSINRQQRFQR----EAAAAALSEFVRYSGGFDSLLEQMVEALCRH 1034 (1326)
Q Consensus 959 W~~~e~~~~gV~lLAr~m~~~~~~~~~~i~~~L~~~L~s~~~~~R----i~a~aflsELl~~~~~~~~l~~~~i~~L~~~ 1034 (1326)
|...|+-.-+...+|-.+.....+++++.++.....--|....+= ..-++.+++.+... ...+...+..|.++
T Consensus 481 ~~~tEaci~~~~sva~~~~~t~~~~i~rl~~~~asik~S~~n~ql~~Tss~~igs~s~~l~e~---P~~ln~sl~~L~~~ 557 (982)
T KOG2022|consen 481 LNRTEACIFQFQSVAEYLGETESTWIPRLFETSASIKLSAPNPQLLSTSSDLIGSLSNWLGEH---PMYLNPSLPLLFQG 557 (982)
T ss_pred HHHHHHHHHHHHHHHhhcCcchhHHHHHHHHhccccccccCChhHHHHHHHHHHHHHHHHhcC---CcccCchHHHHHHH
Confidence 444444445555555555544444555555544332222221111 11122333333321 12233345566666
Q ss_pred cCCCChhHHHHHhhhccCCcc---hhhhhhHHHHHHHHHhhccCCC--hhHHHHHHHHHHHHhccCCcCCcchhHHhHHh
Q 000730 1035 VSDESPTVRGLCLRGLVQIPS---IHIHQYATQVLSVILALLDDLD--ESVQLTAVSCLLTILKSSSKDAVEPILLNLSV 1109 (1326)
Q Consensus 1035 l~D~~~~VR~lsLrGLgnl~~---~~v~~~~~~lL~all~~L~d~d--~~V~leAm~~L~~lL~~l~~~~~~~~l~~l~~ 1109 (1326)
+..+...+... -+|..+.. .+...|....+.++-+.+-..+ ..+.+..|.++|.++.++..+..-..+..|..
T Consensus 558 Lh~sk~s~q~i--~tl~tlC~~C~~~L~py~d~~~a~~~e~l~~~~~~~S~~~klm~sIGyvls~~~pEe~~kyl~~lin 635 (982)
T KOG2022|consen 558 LHNSKESEQAI--STLKTLCETCPESLDPYADQFSAVCYEVLNKSNAKDSDRLKLMKSIGYVLSRLKPEEIPKYLMKLIN 635 (982)
T ss_pred hcCchHHHHHH--HHHHHHHHhhhhhCchHHHHHHHHHHHHhcccccCchHHHHHHHHHHHHHHhccHHhHHHHHHHHHH
Confidence 65443333322 22333322 2566777777777777776543 55888888888888887763332222222211
Q ss_pred ----hhcCc----Cc------------------------------CC-------------ChHHHHHHHHHHHHhhhc--
Q 000730 1110 ----RLRNL----QV------------------------------SM-------------NVKMRRNAFAAFGALSNF-- 1136 (1326)
Q Consensus 1110 ----~lrpf----fe------------------------------de-------------~~~vR~aAi~LfG~L~~~-- 1136 (1326)
++.+. .+ .| =-.||.-+|-.|-++...
T Consensus 636 ~il~qle~~l~~~i~~~e~~l~~~~~l~~iS~LftSL~~~~~~~d~d~~~~~~~~~qq~~il~v~~k~i~~~~kv~s~~~ 715 (982)
T KOG2022|consen 636 PILSQLEINLAPGIDDQENHLRIAFQLNTISALFTSLINKKDIIDTDQPEQREEPFQQFPILQVLQKAIPVFEKVLSMWL 715 (982)
T ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCccccccchhhhccccccCCHHHHHHHHHHHHHHHHHHHh
Confidence 11111 11 11 124556666666555431
Q ss_pred ---------------CCCcchHHHHHHHHhhhhHHHHhccCCChhHH----H---HHHHHHHhhchhhhhhhhhhhccc-
Q 000730 1137 ---------------GVGSQREAFLEQIHAMLPRLILHIYDDDLSVR----Q---ACRNTLKQVAPFMEIGVYGIFNSH- 1193 (1326)
Q Consensus 1137 ---------------~~~~~~~~~~eQv~~~LvpLLlHL~D~~~~V~----~---ack~tL~~~a~lL~~~l~~lf~~~- 1193 (1326)
+.....++|-+.....+.+.+......+..|. . -|+++-..|.++.+-....+|++-
T Consensus 716 ~~s~vve~~C~i~~~~v~~~~~sF~~p~l~~l~~Fi~r~~~~~~a~tl~l~~~~l~~~~~~~~~~~lv~~~~~~~~q~sl 795 (982)
T KOG2022|consen 716 GLSDVVEASCIIMVKGVRSLLTSFPEPMLPSLCPFIVRFLTSCLAVTLSLIAACLLAKSTVEQCKPLVGQDMANAFQQSL 795 (982)
T ss_pred cchhHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhccchHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHH
Confidence 11222333444445555555555444443333 1 234444455555555333333321
Q ss_pred -cCCCCC---CCC-hHHHHHHHHHHHHHhCcchHH-------HHHH-HHHHhhcCCChhHHHHHHHHHhhhhccCch---
Q 000730 1194 -CFNSDH---RSD-YETFVRDLTRQFVQHFPSRID-------SYMG-STIQAFEAPWPIIQANAIYFSSSILCLCDD--- 1257 (1326)
Q Consensus 1194 -~~~~~~---~l~-~~~f~~~i~k~L~~~~~~~~~-------~~l~-~~l~y~kS~~~~IR~aA~~fiG~l~~~~~~--- 1257 (1326)
.++++- ..+ |.+|+. +.+...+..|+-.. .++. .++..++||-+..=+||+.|+-.++.....
T Consensus 796 ~lf~~~~f~n~~Di~~~~~~-~v~~ilkk~P~~~~~~~~~~ts~i~~~a~~ll~~pE~~~i~aa~qF~t~~~~~~~s~~~ 874 (982)
T KOG2022|consen 796 LLFEQHPFSNQPDIYLQLIG-FVRQILKKIPKFLEPSMLAFTSLILICAFILLNSPEPTTIRAASQFLTALATYATSHDL 874 (982)
T ss_pred HHHhccCCCCCchHHHHHHH-HHHHHHHhCcCccccchHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHhhcccchh
Confidence 112111 111 345554 44444555555432 3444 888999999988555566565544432222
Q ss_pred ----hhhhhccHHHHHHHHHHHhccC-CChhHHHHHHHHHHH
Q 000730 1258 ----QHILSLFYTQVFGLLVVKLSQS-ADAIVRATCSSSLGW 1294 (1326)
Q Consensus 1258 ----~~~~~~~~e~l~~~L~~~Ll~D-pdp~VR~~Aa~aL~~ 1294 (1326)
+...+++...+++.++. +-.- +-+.|-+.|-.=+..
T Consensus 875 ~tv~~~V~~~G~~Li~~im~~-vgg~~~RS~ld~~aDIL~al 915 (982)
T KOG2022|consen 875 VTVTSVVAEIGPILIYAIMRG-VGGEASRSTLDALADILLAL 915 (982)
T ss_pred HHHHHHHHhcchHHHHHHHHH-hcCcCccchhHHHHHHHHHH
Confidence 22234455556666666 4433 356666655444333
No 162
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=67.49 E-value=12 Score=45.35 Aligned_cols=119 Identities=20% Similarity=0.133 Sum_probs=80.9
Q ss_pred HHHhhcCCCChhHHHHHhhhccCCcch----hhhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhccCCcCC------
Q 000730 1030 ALCRHVSDESPTVRGLCLRGLVQIPSI----HIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDA------ 1099 (1326)
Q Consensus 1030 ~L~~~l~D~~~~VR~lsLrGLgnl~~~----~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~------ 1099 (1326)
++..--.+.|..||..|+|++|-...| ....+....-++++..+.|+.=.++..|..++++|-+.+-...
T Consensus 395 Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~ 474 (728)
T KOG4535|consen 395 FLLGCNDSKNRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSF 474 (728)
T ss_pred HHhcccchHHHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHH
Confidence 343333446888999999999977654 4566677788889999998878899999999999865443221
Q ss_pred ---cchhHHhHHhhhcCcCcCCChHHHHHHHHHHHHhhhcCCCcchHHHHHH
Q 000730 1100 ---VEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQ 1148 (1326)
Q Consensus 1100 ---~~~~l~~l~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQ 1148 (1326)
++..++.=..+.-..=+-.++.||..|++.+|.+..+...-.+-.+.+-
T Consensus 475 ~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~ 526 (728)
T KOG4535|consen 475 QERFSGLLLLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEI 526 (728)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHH
Confidence 1122222233334455668899999999999999875433333334333
No 163
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=67.43 E-value=12 Score=44.10 Aligned_cols=69 Identities=13% Similarity=0.063 Sum_probs=52.1
Q ss_pred HHHHhhcCCChhHHHHHHHHHhhhhccCchhhhhhccHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHH
Q 000730 1228 STIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLLK 1297 (1326)
Q Consensus 1228 ~~l~y~kS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k 1297 (1326)
-.+.|++++...+|..|++.||-.+++-|.-+..-+...-+-.-+.. |.+|.+-.||.+|--|++-+.+
T Consensus 128 ~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~-ls~~~~~~~r~kaL~AissLIR 196 (342)
T KOG2160|consen 128 PLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKI-LSSDDPNTVRTKALFAISSLIR 196 (342)
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHH-HccCCCchHHHHHHHHHHHHHh
Confidence 34569999999999999999999999999655333332323333333 7789999999999999888764
No 164
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=66.82 E-value=1.9e+02 Score=34.49 Aligned_cols=174 Identities=9% Similarity=0.170 Sum_probs=101.7
Q ss_pred cCCChHHHHHHHHHHHHhhhcCCCcchHHHHHHHHhh---hhHHHHhccCCChhHHHHHHHHHHhhchhh-------hh-
Q 000730 1116 VSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAM---LPRLILHIYDDDLSVRQACRNTLKQVAPFM-------EI- 1184 (1326)
Q Consensus 1116 ede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~---LvpLLlHL~D~~~~V~~ack~tL~~~a~lL-------~~- 1184 (1326)
..=.-+.|..+..+|+.+.+...+....+..+.+.+. ++..|+.--+ +|+++--|..-|+.|...= ..
T Consensus 86 ~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~-~~dial~~g~mlRec~k~e~l~~~iL~~~ 164 (335)
T PF08569_consen 86 PKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYE-NPDIALNCGDMLRECIKHESLAKIILYSE 164 (335)
T ss_dssp GGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGG-STTTHHHHHHHHHHHTTSHHHHHHHHTSG
T ss_pred hhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhc-CccccchHHHHHHHHHhhHHHHHHHhCcH
Confidence 3335679999999999999965544332455555444 3333444333 7789999999999998531 11
Q ss_pred hhhhhhccccCCCCCCCChHHHHH--HHHHHHHHhCcc--------hHHHHHHHHHHhhcCCChhHHHHHHHHHhhhhcc
Q 000730 1185 GVYGIFNSHCFNSDHRSDYETFVR--DLTRQFVQHFPS--------RIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCL 1254 (1326)
Q Consensus 1185 ~l~~lf~~~~~~~~~~l~~~~f~~--~i~k~L~~~~~~--------~~~~~l~~~l~y~kS~~~~IR~aA~~fiG~l~~~ 1254 (1326)
....+|.- - +..+|+..-. .+.+.+...+++ ..++|...-...+.|+.--.|+-+..++|-++-.
T Consensus 165 ~f~~ff~~---~--~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkLL~ellld 239 (335)
T PF08569_consen 165 CFWKFFKY---V--QLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKLLGELLLD 239 (335)
T ss_dssp GGGGHHHH---T--TSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHH---h--cCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHHHHHHHHc
Confidence 11222221 1 1223321111 223344444444 3445555556678999999999999999977654
Q ss_pred Cchh--hhhhccHHHHHHHHHHHhccCCChhHHHHHHHHHHHHH
Q 000730 1255 CDDQ--HILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLL 1296 (1326)
Q Consensus 1255 ~~~~--~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~ 1296 (1326)
-..- ....++...-...++. |++|+...||--|=--+..+.
T Consensus 240 r~n~~vm~~yi~~~~nLkl~M~-lL~d~sk~Iq~eAFhvFKvFV 282 (335)
T PF08569_consen 240 RSNFNVMTRYISSPENLKLMMN-LLRDKSKNIQFEAFHVFKVFV 282 (335)
T ss_dssp GGGHHHHHHHTT-HHHHHHHHH-HTT-S-HHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHCCHHHHHHHHH-HhcCcchhhhHHHHHHHHHHH
Confidence 4322 2344666666777777 899999999998876666554
No 165
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=65.80 E-value=1.1e+02 Score=37.33 Aligned_cols=208 Identities=15% Similarity=0.126 Sum_probs=110.5
Q ss_pred hHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCcCCChHHHHHHHHHHHHhhhcCCCcchHHHHHHHHhhhhHHHH
Q 000730 1079 SVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLIL 1158 (1326)
Q Consensus 1079 ~V~leAm~~L~~lL~~l~~~~~~~~l~~l~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~LvpLLl 1158 (1326)
.|++||-..|-.++..-..+.+..+-+.+...+- =+.|-.+.-.+...++|++-+... ....+=-.-..+-..++
T Consensus 197 ~vRve~~rlLEq~~~aeN~d~va~~~~~~Il~lA--K~~e~~e~aR~~~~il~~mFKHSe---et~~~Lvaa~~lD~vl~ 271 (832)
T KOG3678|consen 197 SVRVEAARLLEQILVAENRDRVARIGLGVILNLA--KEREPVELARSVAGILEHMFKHSE---ETCQRLVAAGGLDAVLY 271 (832)
T ss_pred HHHHHHHHHHHHHHhhhhhhHHhhccchhhhhhh--hhcCcHHHHHHHHHHHHHHhhhhH---HHHHHHHhhcccchhee
Confidence 3666666666666544333322222222211111 245567777778888888876322 11111112245667788
Q ss_pred hccCCChhHHHHHHHHHHhhchhhhh-hhhhhhcccc--C------CCCC------------------------------
Q 000730 1159 HIYDDDLSVRQACRNTLKQVAPFMEI-GVYGIFNSHC--F------NSDH------------------------------ 1199 (1326)
Q Consensus 1159 HL~D~~~~V~~ack~tL~~~a~lL~~-~l~~lf~~~~--~------~~~~------------------------------ 1199 (1326)
...-.+|++-.-|..||..|+-.=+- .-+.+.++.+ | .-|+
T Consensus 272 ~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClAV~vlat~KE~E~~VrkS~Tla 351 (832)
T KOG3678|consen 272 WCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLAVAVLATNKEVEREVRKSGTLA 351 (832)
T ss_pred ecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHHhhhhhhhhhhHHHhhccchh
Confidence 88888999999999999999854333 2223333221 0 0000
Q ss_pred -------CCChHHHHHHHHHHHHHhCcchHHHHHHHHHHhhcCCChhHHHHHHHHHh--hhhccCchhhhhhccHH-HHH
Q 000730 1200 -------RSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSS--SILCLCDDQHILSLFYT-QVF 1269 (1326)
Q Consensus 1200 -------~l~~~~f~~~i~k~L~~~~~~~~~~~l~~~l~y~kS~~~~IR~aA~~fiG--~l~~~~~~~~~~~~~~e-~l~ 1269 (1326)
.++-+.|.+|--++ -+++-...+.-.+..++|..-.-|+-++.+.- ..++... -...+-.| ..+
T Consensus 352 LVEPlva~~DP~~FARD~hd~----aQG~~~d~LqRLvPlLdS~R~EAq~i~AF~l~~EAaIKs~Q--~K~kVFseIGAI 425 (832)
T KOG3678|consen 352 LVEPLVASLDPGRFARDAHDY----AQGRGPDDLQRLVPLLDSNRLEAQCIGAFYLCAEAAIKSLQ--GKTKVFSEIGAI 425 (832)
T ss_pred hhhhhhhccCcchhhhhhhhh----hccCChHHHHHhhhhhhcchhhhhhhHHHHHHHHHHHHHhc--cchhHHHHHHHH
Confidence 01112222222221 23344455666788888887766665553322 1122211 10011111 145
Q ss_pred HHHHHHhccCCChhHHHHHHHHHHHHHHH
Q 000730 1270 GLLVVKLSQSADAIVRATCSSSLGWLLKS 1298 (1326)
Q Consensus 1270 ~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k~ 1298 (1326)
.+|.+ +-..||..-..+|.+||-.+++-
T Consensus 426 QaLKe-vaSS~d~vaakfAseALtviGEE 453 (832)
T KOG3678|consen 426 QALKE-VASSPDEVAAKFASEALTVIGEE 453 (832)
T ss_pred HHHHH-HhcCchHHHHHHHHHHHHHhccc
Confidence 56666 67799999999999999999853
No 166
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.16 E-value=13 Score=46.91 Aligned_cols=106 Identities=23% Similarity=0.200 Sum_probs=74.7
Q ss_pred HHHHHHHHhhhhccccccchHHHHHHHHHhhhc-----CC-chhhHHHHHHHHHHhhcCCCChhHHHHHhhhccCCcch-
Q 000730 984 VQTICLILTKSINRQQRFQREAAAAALSEFVRY-----SG-GFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI- 1056 (1326)
Q Consensus 984 ~~~i~~~L~~~L~s~~~~~Ri~a~aflsELl~~-----~~-~~~~l~~~~i~~L~~~l~D~~~~VR~lsLrGLgnl~~~- 1056 (1326)
+.+=++++..+|++++...|.+|+-=....... |. .-..++..++ -.-..|++..||.....||-.|+..
T Consensus 218 ~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP~~i~~~ll~kI~---d~~a~dt~s~VR~svf~gl~~~l~np 294 (1005)
T KOG1949|consen 218 IQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMIPPTILIDLLKKIT---DELAFDTSSDVRCSVFKGLPMILDNP 294 (1005)
T ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHH---HHhhhccchheehhHhcCcHHHHcCc
Confidence 445566777888888888888887443332221 11 1122223333 3346889999999999999988654
Q ss_pred hhhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHh
Q 000730 1057 HIHQYATQVLSVILALLDDLDESVQLTAVSCLLTIL 1092 (1326)
Q Consensus 1057 ~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL 1092 (1326)
.-+...+++|+|+-..|.|..+.|++.+...|.+|=
T Consensus 295 ~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik 330 (1005)
T KOG1949|consen 295 LSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIK 330 (1005)
T ss_pred cchhHHHHHHHhcchhhhccchhHHHHHHHHHHHHH
Confidence 334456889999999999999999999999998873
No 167
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=65.06 E-value=57 Score=41.18 Aligned_cols=157 Identities=15% Similarity=0.181 Sum_probs=89.6
Q ss_pred HHHHHHHhhccCC--ChhHHHHHHHHH---HHHhccCCcCCcchhHHhHHhhhcCcCc--------CCChHHHHHHHHHH
Q 000730 1064 QVLSVILALLDDL--DESVQLTAVSCL---LTILKSSSKDAVEPILLNLSVRLRNLQV--------SMNVKMRRNAFAAF 1130 (1326)
Q Consensus 1064 ~lL~all~~L~d~--d~~V~leAm~~L---~~lL~~l~~~~~~~~l~~l~~~lrpffe--------de~~~vR~aAi~Lf 1130 (1326)
.++..+..||... +..+...+|.-+ ..++...+...+..+-..|--+++|..+ .+....|..|-+.+
T Consensus 319 ~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~l 398 (501)
T PF13001_consen 319 NILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYETL 398 (501)
T ss_pred cHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHHHHH
Confidence 3344444444443 223333333333 4555554444444445555555566663 46789999999999
Q ss_pred HHhhhcCCCcc--hHHHHHHHHhhhhHHHHhccCCChhHHHHHHHHHHhhchhhhh-hhhhhhccccCCCCCCCChHHHH
Q 000730 1131 GALSNFGVGSQ--REAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEI-GVYGIFNSHCFNSDHRSDYETFV 1207 (1326)
Q Consensus 1131 G~L~~~~~~~~--~~~~~eQv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL~~-~l~~lf~~~~~~~~~~l~~~~f~ 1207 (1326)
|.|++.....- .-.+.+.++. .|.++.++|+.+-..||...++.+.+ .- . + +.-.
T Consensus 399 G~L~~~~p~l~~~d~~li~~LF~-------sL~~~~~evr~sIqeALssl~~af~~~~~-----~----~------~~~~ 456 (501)
T PF13001_consen 399 GLLAKRAPSLFSKDLSLIEFLFD-------SLEDESPEVRVSIQEALSSLAPAFKDLPD-----D----E------DEQK 456 (501)
T ss_pred HHHHccCcccccccHHHHHHHHH-------HhhCcchHHHHHHHHHHHHHHHHHhcccc-----c----h------hHHH
Confidence 99998433221 1223333333 34899999999999999998887655 21 0 0 0011
Q ss_pred HHHHHHHHHhCcchHHHHHHHHHHhhcCCChhHHHHHHHHHhhhhccCc
Q 000730 1208 RDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCD 1256 (1326)
Q Consensus 1208 ~~i~k~L~~~~~~~~~~~l~~~l~y~kS~~~~IR~aA~~fiG~l~~~~~ 1256 (1326)
......+. ..|..+.....|-+|+.|+....-..+
T Consensus 457 ~~~~~~l~--------------~~~~~~~~~~~R~~avk~an~~fpf~d 491 (501)
T PF13001_consen 457 RLLLELLL--------------LSYIQSEVRSCRYAAVKYANACFPFSD 491 (501)
T ss_pred HHHHHHHH--------------HhhccchhHHHHHHHHHHHHHhCCccc
Confidence 11112222 224447778899999999886654443
No 168
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=64.51 E-value=26 Score=37.28 Aligned_cols=81 Identities=12% Similarity=0.062 Sum_probs=61.4
Q ss_pred cchHHHHHHHHHHhhcCCChhHHHHHHHHHhhhhccCchhhhhhccHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHH
Q 000730 1219 PSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLLKS 1298 (1326)
Q Consensus 1219 ~~~~~~~l~~~l~y~kS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k~ 1298 (1326)
...++.+......+++|+.+.-|..++.+++-++.+.+.+...+-+..++ +.|...|.++..+.+...|-.+|..++..
T Consensus 20 ~~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~-~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~ 98 (165)
T PF08167_consen 20 KSALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWL-RALLSILEKPDPPSVLEAAIITLTRLFDL 98 (165)
T ss_pred HHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHH-HHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 45666777788889999999999999999999999876555433444444 44555377777778899999999999865
Q ss_pred cc
Q 000730 1299 IN 1300 (1326)
Q Consensus 1299 ~~ 1300 (1326)
..
T Consensus 99 ~~ 100 (165)
T PF08167_consen 99 IR 100 (165)
T ss_pred hc
Confidence 43
No 169
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=64.07 E-value=20 Score=46.65 Aligned_cols=118 Identities=18% Similarity=0.212 Sum_probs=76.2
Q ss_pred ChhHHHHHhhhccCCcch---hhhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcC
Q 000730 1039 SPTVRGLCLRGLVQIPSI---HIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQ 1115 (1326)
Q Consensus 1039 ~~~VR~lsLrGLgnl~~~---~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~l~~~lrpff 1115 (1326)
+...| .|+.-|.|++.. +.......+++.++..|+..+.++..-++..|.++--.-+.+. .-.-..+..+|..+|
T Consensus 263 eqLlr-v~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~-~m~~~giV~kL~kLl 340 (708)
T PF05804_consen 263 EQLLR-VAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKD-EMAESGIVEKLLKLL 340 (708)
T ss_pred HHHHH-HHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHH-HHHHcCCHHHHHHHh
Confidence 44444 445666677654 2223346677888888888888888888888888754322221 112234555667788
Q ss_pred cCCChHHHHHHHHHHHHhhhcCCCcchHHHHHHHHh--hhhHHHHhccCCC
Q 000730 1116 VSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHA--MLPRLILHIYDDD 1164 (1326)
Q Consensus 1116 ede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~--~LvpLLlHL~D~~ 1164 (1326)
..++.+++..|..++.+|+- ....+.++.+ .+++|+--|.|++
T Consensus 341 ~s~~~~l~~~aLrlL~NLSf------d~~~R~~mV~~GlIPkLv~LL~d~~ 385 (708)
T PF05804_consen 341 PSENEDLVNVALRLLFNLSF------DPELRSQMVSLGLIPKLVELLKDPN 385 (708)
T ss_pred cCCCHHHHHHHHHHHHHhCc------CHHHHHHHHHCCCcHHHHHHhCCCc
Confidence 99999999999999999985 2334666553 5555665666654
No 170
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=63.16 E-value=4.8e+02 Score=34.60 Aligned_cols=118 Identities=13% Similarity=0.096 Sum_probs=76.0
Q ss_pred hhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCcCCChHHHHHHHHHHHHhhhcC
Q 000730 1058 IHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFG 1137 (1326)
Q Consensus 1058 v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~l~~~lrpffede~~~vR~aAi~LfG~L~~~~ 1137 (1326)
+..+.+.+=.+++..+...+...+...+.++..+.+......-+ ..+-...-+.-|++.-..++.....++|.++-+.
T Consensus 435 ~~~~~~~lW~~l~~~~~~~~~~la~~lL~~~~~l~~l~~~~~~~--~~~~~~~~~~~~N~~~~~~~~~~~~il~rls~~~ 512 (727)
T PF12726_consen 435 VSRISPNLWKALLKSLDSDNPDLAKALLKSLSPLIGLEKFPPKK--EKDELDPAKTQFNKSLGQITDLISQILERLSDFD 512 (727)
T ss_pred chhhhHHHHHHHHHhhcCCChHHHHHHHHHHHHhccccccCCcc--cccCcchHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 34567788888888888666666666666666664432222111 0000011123467777889999999999999874
Q ss_pred CCcchHHHHH-HHHhhhhHHHHhccCCChhHHHHHHHHHHhhch
Q 000730 1138 VGSQREAFLE-QIHAMLPRLILHIYDDDLSVRQACRNTLKQVAP 1180 (1326)
Q Consensus 1138 ~~~~~~~~~e-Qv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~ 1180 (1326)
....++-|.+ ++.++++++++| ++.++.+++..-++.+..
T Consensus 513 ~~~L~~l~~d~~~~~~i~s~lfs---p~~~l~qaA~~llk~~~d 553 (727)
T PF12726_consen 513 PSHLKELLSDPDAAQAIWSLLFS---PDDDLYQAAQDLLKQAFD 553 (727)
T ss_pred HHHHHHHHcCcchhhHHHhheeC---CChHHHHHHHHHHHHHhc
Confidence 4444444443 467888888886 777899999888877654
No 171
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=62.13 E-value=29 Score=37.57 Aligned_cols=84 Identities=10% Similarity=0.035 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHhCcchHHHHHHHHHHhhcCCChhHHHHHHHHHhhhhccCchhhhhhccHHHHHHHHHHHhccCCChhHH
Q 000730 1206 FVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVR 1285 (1326)
Q Consensus 1206 f~~~i~k~L~~~~~~~~~~~l~~~l~y~kS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR 1285 (1326)
....+|..+...++.....+ .....+.+|+..-+|++|..+....... ..+.+.++..+.. ++.|++..||
T Consensus 88 ~~D~~~~~~~~~~~~~~~~~-~~~~~w~~s~~~~~rR~~~~~~~~~~~~-------~~~~~~~l~~~~~-~~~d~~~~Vq 158 (197)
T cd06561 88 LVDSLCANLLGKLLYAEPEL-DLLEEWAKSENEWVRRAAIVLLLRLIKK-------ETDFDLLLEIIER-LLHDEEYFVQ 158 (197)
T ss_pred HHHHHHHHHHHHHHhcCcch-HHHHHHHhCCcHHHHHHHHHHHHHHHHh-------cccHHHHHHHHHH-hCCCHHHHHH
Confidence 34455666655554443333 5666799999999999987655433322 1345777888888 8999999999
Q ss_pred HHHHHHHHHHHHH
Q 000730 1286 ATCSSSLGWLLKS 1298 (1326)
Q Consensus 1286 ~~Aa~aL~~l~k~ 1298 (1326)
...+-+|..+++.
T Consensus 159 kav~w~L~~~~~~ 171 (197)
T cd06561 159 KAVGWALREYGKK 171 (197)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999998876
No 172
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=60.93 E-value=19 Score=36.28 Aligned_cols=80 Identities=13% Similarity=-0.019 Sum_probs=52.3
Q ss_pred hCcchHHHHHHHHHHhh-cCCChhHHHHHHHHHhhhhccCchhhhhhccHHHHHHHHHHHhccCCChhHHHHHHHHHHHH
Q 000730 1217 HFPSRIDSYMGSTIQAF-EAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWL 1295 (1326)
Q Consensus 1217 ~~~~~~~~~l~~~l~y~-kS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l 1295 (1326)
++-+.=...+...+.++ +|..+..-+-|+.=||.+++++|. -+.-+..-.....++. |..+|||.||.-|-.|+..+
T Consensus 36 kf~~~~~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~-gr~ii~~lg~K~~vM~-Lm~h~d~eVr~eAL~avQkl 113 (119)
T PF11698_consen 36 KFEENNFELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPN-GRNIIEKLGAKERVME-LMNHEDPEVRYEALLAVQKL 113 (119)
T ss_dssp GGSSGGGHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GG-GHHHHHHHSHHHHHHH-HTS-SSHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHccCCCcceeehhhcchHHHHHHChh-HHHHHHhcChHHHHHH-HhcCCCHHHHHHHHHHHHHH
Confidence 33444445566666777 444566777788889999999973 2222322234455666 78899999999999998777
Q ss_pred HHH
Q 000730 1296 LKS 1298 (1326)
Q Consensus 1296 ~k~ 1298 (1326)
--.
T Consensus 114 m~~ 116 (119)
T PF11698_consen 114 MVN 116 (119)
T ss_dssp HHH
T ss_pred HHh
Confidence 533
No 173
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=60.85 E-value=36 Score=36.86 Aligned_cols=88 Identities=17% Similarity=0.197 Sum_probs=63.1
Q ss_pred HHHHHHHHhhcCCCChhHHHHHhhhccCCc----chhhhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhccCCc--C
Q 000730 1025 EQMVEALCRHVSDESPTVRGLCLRGLVQIP----SIHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSK--D 1098 (1326)
Q Consensus 1025 ~~~i~~L~~~l~D~~~~VR~lsLrGLgnl~----~~~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~--~ 1098 (1326)
+..+-.+.+++.....=.|-+|.+|.-.+. ..++-...++++..+-.+|...|.+|...++.+|..++...+. +
T Consensus 37 ~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG~ 116 (183)
T PF10274_consen 37 HHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVGE 116 (183)
T ss_pred hhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhH
Confidence 345556777777777777788888877662 3377778899999999999999999999999999999544321 3
Q ss_pred CcchhHHhHHhhhc
Q 000730 1099 AVEPILLNLSVRLR 1112 (1326)
Q Consensus 1099 ~~~~~l~~l~~~lr 1112 (1326)
.+.+++-+|...+.
T Consensus 117 aLvPyyrqLLp~ln 130 (183)
T PF10274_consen 117 ALVPYYRQLLPVLN 130 (183)
T ss_pred HHHHHHHHHHHHHH
Confidence 34555555544444
No 174
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=56.49 E-value=48 Score=38.61 Aligned_cols=179 Identities=16% Similarity=0.127 Sum_probs=97.0
Q ss_pred CCCCChhhHHHHHHHHHHHHhhcCchhHHH----HHHHHhhhhccccccchHHHHHHHHHhhhcCCch-hhHHHHHHHHH
Q 000730 957 GEQNDKEKWINLIGDVAGCVSIKRPKEVQT----ICLILTKSINRQQRFQREAAAAALSEFVRYSGGF-DSLLEQMVEAL 1031 (1326)
Q Consensus 957 g~W~~~e~~~~gV~lLAr~m~~~~~~~~~~----i~~~L~~~L~s~~~~~Ri~a~aflsELl~~~~~~-~~l~~~~i~~L 1031 (1326)
=.|++-+...+|+- ..|.++.+++..+.. ++-.+...++++....--+|+..++++..+-... ...++.++..|
T Consensus 97 L~s~dW~~~vdgLn-~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~ld~lv~~L 175 (334)
T KOG2933|consen 97 LSSDDWEDKVDGLN-SIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQELDDLVTQL 175 (334)
T ss_pred hchHHHHHHhhhHH-HHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777777877 456667777654433 3334444455554545555555555544432110 00112222222
Q ss_pred HhhcCCCChhHHHHHhhhccCCcchhhhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhh
Q 000730 1032 CRHVSDESPTVRGLCLRGLVQIPSIHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRL 1111 (1326)
Q Consensus 1032 ~~~l~D~~~~VR~lsLrGLgnl~~~~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~l~~~l 1111 (1326)
.-...++| .-|+-+|-.+|.........+.+ ...|
T Consensus 176 l~ka~~dn--------------------------------------rFvreda~kAL~aMV~~vtp~~~-------L~~L 210 (334)
T KOG2933|consen 176 LHKASQDN--------------------------------------RFVREDAEKALVAMVNHVTPQKL-------LRKL 210 (334)
T ss_pred Hhhhcccc--------------------------------------hHHHHHHHHHHHHHHhccChHHH-------HHHH
Confidence 22222222 33555666666666655544322 2233
Q ss_pred cCcCcCCChHHHHHHHHHHHHhhhcCCCcchHHHHHHHHhhh-hHHHHhccCCChhHHHHHHHHHHhhchhhhh
Q 000730 1112 RNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAML-PRLILHIYDDDLSVRQACRNTLKQVAPFMEI 1184 (1326)
Q Consensus 1112 rpffede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~L-vpLLlHL~D~~~~V~~ack~tL~~~a~lL~~ 1184 (1326)
.|+.-+.++.+|+.|...|-....-. ...+..+|...-+ -.+=-|+.|.=|.+++++++.+......++|
T Consensus 211 ~~~~~~~n~r~r~~a~~~~~~~v~rl---~v~~~~~~~~~dl~~a~~~~~~d~Lp~~~~~a~~~~~~~~~v~~~ 281 (334)
T KOG2933|consen 211 IPILQHSNPRVRAKAALCFSRCVIRL---GVLPVLLQGSCDLSRAAQEQGSDKLPELREAARFVRLELKEVLKT 281 (334)
T ss_pred HHHHhhhchhhhhhhhccccccceec---cccchhhHhHHHHHHHHHhhhcccccccccchhHHHHhHHHHHHH
Confidence 45566667778777776665544311 1334444433222 2334678888889999999999888887777
No 175
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.58 E-value=53 Score=39.50 Aligned_cols=110 Identities=15% Similarity=0.181 Sum_probs=92.9
Q ss_pred HHHHHhhcCCCChhHHHHHhhhccCCcch---hhhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhccCCcCCcchhH
Q 000730 1028 VEALCRHVSDESPTVRGLCLRGLVQIPSI---HIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPIL 1104 (1326)
Q Consensus 1028 i~~L~~~l~D~~~~VR~lsLrGLgnl~~~---~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l 1104 (1326)
+.-|+..+++.|..||.=+++|+-.+... +..-+.-.++.......-|.+..|+-.+...+-.++........+++.
T Consensus 60 lkeLl~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~~ 139 (393)
T KOG2149|consen 60 LKELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPMV 139 (393)
T ss_pred HHHHHhhhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcchH
Confidence 44677788999999999999999866432 444445677888888888888999999999999988888777789999
Q ss_pred HhHHhhhcCcCcCCChHHHHHHHHHHHHhhhcC
Q 000730 1105 LNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFG 1137 (1326)
Q Consensus 1105 ~~l~~~lrpffede~~~vR~aAi~LfG~L~~~~ 1137 (1326)
.-+...++.-+.+--+++|..|+--|--|+.++
T Consensus 140 ~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~ 172 (393)
T KOG2149|consen 140 SLLMPYISSAMTHITPEIQEDSLKFLSLLLERY 172 (393)
T ss_pred HHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHc
Confidence 889999999999999999999999999888754
No 176
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=53.52 E-value=7e+02 Score=36.60 Aligned_cols=323 Identities=12% Similarity=0.096 Sum_probs=158.1
Q ss_pred CchhHHHHHHHHHHHHHHHHhhhhhcCCCcCCCCHHHHHHHHHHHhccCCCCCCCCchhhhHhHHHHHHHHhhcccccCC
Q 000730 407 RHHTAKQAVITAIDLLGRAVINAAENGASFPLKKRDQLLDYILTLMGREENDSFADSSIELLHTQALALSACTTLVTVEP 486 (1326)
Q Consensus 407 kd~~~K~a~l~si~~i~~av~~~~~~~~~f~f~~k~eLl~~l~~li~~ep~~~l~s~~~~l~~vr~~am~a~t~L~~L~P 486 (1326)
++..+-.-.+.++.+++.-+-...+ -..|.|. .++++=+..+|+.... .. +|.+++.++..++.-
T Consensus 1149 ~n~~va~fAidsLrQLs~kfle~eE-L~~f~FQ--kefLkPfe~im~~s~~----~e------VrE~ILeCv~qmI~s-- 1213 (1780)
T PLN03076 1149 ENLSIAIFAMDSLRQLSMKFLEREE-LANYNFQ--NEFMKPFVIVMRKSNA----VE------IRELIIRCVSQMVLS-- 1213 (1780)
T ss_pred cchhHHHHHHHHHHHHHHHhcchhh-hhchhHH--HHHHHHHHHHHHhcCc----hH------HHHHHHHHHHHHHHH--
Confidence 4555556666677777776655332 2345554 4888988888875431 12 899999999987632
Q ss_pred CCChhHHHHHHH----HhhhccccCCC--CcccHHHHHHHHHHHHHHHhhhcCCCCcccHHHHHHHHHHHHHHhcChhHH
Q 000730 487 KLTIETRNHVMK----ATLGFFALPND--PIDVVNPLIDNLITLLCAILLTSGEDGRSRADQLLHILRQIDQYVSSPVEY 560 (1326)
Q Consensus 487 ~l~~e~~~~ll~----~c~~v~~lp~~--~~~l~~~~~~al~~lL~~ll~~~~~d~~~~~~~L~~~l~~l~pwl~S~~~~ 560 (1326)
+..=++ +.|++|+.+.. ...+++..++.+..+....+..=+. ...+.+..++.=+..+.+...+
T Consensus 1214 ------~~~nIkSGWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~---~~~~~F~DlV~cL~~Fa~q~~~- 1283 (1780)
T PLN03076 1214 ------RVNNVKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITE---TETTTFTDCVNCLIAFTNSRFN- 1283 (1780)
T ss_pred ------HHhhhhcCcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccc---cchhHHHHHHHHHHHHHhCcCc-
Confidence 222221 33456655532 2246666677666555443321110 0146778888888888765544
Q ss_pred HhhHHHHHHHHHHH---HHHhhhhcccccCCCCCCccchh-hh--hhhhhccCCCCCCcccCCchh-hhhhhhHHHHhhc
Q 000730 561 QRRRSCLAVYEMLL---KFRTLCVIGYCALGCHGSCTHIK-QI--DRAVLGNFSNLPSAYVLPSRE-ALCLGNRVIMYLP 633 (1326)
Q Consensus 561 eR~RA~~~~~~lL~---~~~~~~~~~~c~~~~~~~~~~~~-~~--~~~~~~~~~~~ps~f~~~~~~-f~~lG~Lvg~l~p 633 (1326)
...++.++..++. ++.+..+ ++.....+.. .. ..+-.....+.+ .+ .+..+ ...-=.++..|.=
T Consensus 1284 -~nISL~AI~lL~~~~~~La~~~~------~~~~~~~~~~~~~~~s~~~~~~~~~~~-~~-~~~~~~~~lW~pLL~~Ls~ 1354 (1780)
T PLN03076 1284 -KDISLNAIAFLRFCATKLAEGDL------GSSSRNKDKEAPPSSPQSGKDGKQESG-EF-TDKDDHLYFWFPLLAGLSE 1354 (1780)
T ss_pred -ccccHHHHHHHHHHHHHHHhccc------ccccccccccccccccccccccccccc-cc-ccchhHHHHHHHHHHHHHH
Confidence 5577766665552 2222100 0000000000 00 000000000000 00 00000 0111234444555
Q ss_pred cccCCChhHHHHHHHHHHHHHHHHhhCCCCCCCCCC-cchh---hhhhhhhhcHHHHHHhcc----------CCC-CChh
Q 000730 634 RCADTDSEVRKISAQILDQLFSISLSLPRPVGSSSG-IDLE---LSYGALSSLEDVIAILRS----------DAS-IDPS 698 (1326)
Q Consensus 634 rC~D~~~~iR~~A~~~i~~Ll~I~l~~~~~~~~~~~-~~~~---~~~~~l~~l~~~~~~l~~----------~~~-~~~~ 698 (1326)
.|.|+.++||..|++.+.-+| ..+. ..++.+ ++.- ....-+..++..++.... +.+ .+..
T Consensus 1355 l~~D~RlEVR~~ALqtLF~iL---~~yG--~~Fs~~~W~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~ 1429 (1780)
T PLN03076 1355 LSFDPRPEIRKSALQVLFDTL---RNHG--HLFSLPLWERVFESVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQD 1429 (1780)
T ss_pred HhcCCcHHHHHHHHHHHHHHH---HHhh--ccCCHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhhh
Confidence 688999999999876654444 2221 112211 1100 001011111100000000 000 0000
Q ss_pred ----HH----HHHHHHHHHccCC--hhHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHhhhcccccccchhhHHHHHHH
Q 000730 699 ----EV----FNRIVSSVCILLT--KDELVATLHSCTTAICDRTKQSAEGAIQAVVEFVTKRGNELSETDVSRTTQSLLS 768 (1326)
Q Consensus 699 ----~~----~~~i~~~i~~~L~--~~el~~ll~~ll~~L~d~~~~~~~~A~~~L~~~l~~rg~~L~e~~V~~I~~~I~~ 768 (1326)
+. +..++..|.+++. ...|.+|+.-+...++..+..-+.-++.-|..++..-|.++++++-..|++.+..
T Consensus 1430 ~Wl~eT~~~AL~~lvdLft~fFd~L~~~L~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ng~~F~~~~W~~i~~~~~~ 1509 (1780)
T PLN03076 1430 AWLYETCTLALQLVVDLFVKFYPTVNPLLKKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGHLFSDEKWLEVVLSLKE 1509 (1780)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHH
Confidence 11 1234444555553 3356667776777778888888888888999999999999987766666665544
No 177
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=53.12 E-value=15 Score=29.83 Aligned_cols=27 Identities=11% Similarity=0.039 Sum_probs=22.8
Q ss_pred cHHHHHHHHHHHhccCCChhHHHHHHHH
Q 000730 1264 FYTQVFGLLVVKLSQSADAIVRATCSSS 1291 (1326)
Q Consensus 1264 ~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~a 1291 (1326)
+.+.+.+++.. -+.|++|.||..|-+.
T Consensus 15 ~~~~v~~~i~~-rl~D~s~~VR~aav~l 41 (42)
T PF12765_consen 15 DSSDVQSAIIR-RLSDSSPSVREAAVDL 41 (42)
T ss_pred chHHHHHHHHH-HhcCCChHHHHHHHHH
Confidence 45678888888 5999999999999775
No 178
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=53.11 E-value=3.4e+02 Score=39.60 Aligned_cols=137 Identities=12% Similarity=0.099 Sum_probs=80.7
Q ss_pred HHHHHHHHhhcCCCChhHHHHHhhhccCCcchh---hh----hhHHHHHHHHHhhccCC-ChhHHHHHHHHHHHHhccCC
Q 000730 1025 EQMVEALCRHVSDESPTVRGLCLRGLVQIPSIH---IH----QYATQVLSVILALLDDL-DESVQLTAVSCLLTILKSSS 1096 (1326)
Q Consensus 1025 ~~~i~~L~~~l~D~~~~VR~lsLrGLgnl~~~~---v~----~~~~~lL~all~~L~d~-d~~V~leAm~~L~~lL~~l~ 1096 (1326)
+.++..|.....|+++.+-.+|.+.+..|..+. +. .-...++.|+.+.-... +.++-+.|+..|..+...+-
T Consensus 1223 ktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La 1302 (1780)
T PLN03076 1223 KSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLA 1302 (1780)
T ss_pred HHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHH
Confidence 556777777778888877777777666543321 11 12234455544433322 35688888888886633321
Q ss_pred cC-----------------------------------CcchhHHhHHhhhcCcCcCCChHHHHHHHHHHHHhhhcCCCcc
Q 000730 1097 KD-----------------------------------AVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQ 1141 (1326)
Q Consensus 1097 ~~-----------------------------------~~~~~l~~l~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~ 1141 (1326)
+. +...+-.-+...+...-.|+|.+||..|+..|=++...-++..
T Consensus 1303 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~F 1382 (1780)
T PLN03076 1303 EGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGHLF 1382 (1780)
T ss_pred hccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhccC
Confidence 10 0112334444555455568999999999976555554333445
Q ss_pred hHHHHHHHHh-hhhHHHHhcc
Q 000730 1142 REAFLEQIHA-MLPRLILHIY 1161 (1326)
Q Consensus 1142 ~~~~~eQv~~-~LvpLLlHL~ 1161 (1326)
...+=+.+++ .|.|++-+++
T Consensus 1383 s~~~W~~if~~VLFPIFd~l~ 1403 (1780)
T PLN03076 1383 SLPLWERVFESVLFPIFDYVR 1403 (1780)
T ss_pred CHHHHHHHHHHHHHHHHHHHH
Confidence 5556677665 6788876654
No 179
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=53.01 E-value=2.3e+02 Score=32.85 Aligned_cols=162 Identities=9% Similarity=0.084 Sum_probs=96.2
Q ss_pred cCCcCCcchhHHhHHhhhcCcCcCCChHHHHHHHHHHHHhhhcCCCcc-----hHHHHHHHHhhhhHHHHhcc-----CC
Q 000730 1094 SSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQ-----REAFLEQIHAMLPRLILHIY-----DD 1163 (1326)
Q Consensus 1094 ~l~~~~~~~~l~~l~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~-----~~~~~eQv~~~LvpLLlHL~-----D~ 1163 (1326)
.++...++....-+.--+-.+.||.+..+|.-+..++.++........ ...+-+.+..++.|.+.||- |+
T Consensus 107 ~~~~~~i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~ 186 (282)
T PF10521_consen 107 QLDRPWISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDE 186 (282)
T ss_pred cCCcchHHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchh
Confidence 555555665555555555678999999999999999999998554333 22234456688889888885 77
Q ss_pred ChhHHHHHHHHHHhhchhhhhhhhhhhccccCCCCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHHhh-cCCChhHHH
Q 000730 1164 DLSVRQACRNTLKQVAPFMEIGVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAF-EAPWPIIQA 1242 (1326)
Q Consensus 1164 ~~~V~~ack~tL~~~a~lL~~~l~~lf~~~~~~~~~~l~~~~f~~~i~k~L~~~~~~~~~~~l~~~l~y~-kS~~~~IR~ 1242 (1326)
...+-.++=-||..++....+ .. ...+...+++++++ .+.+ .+.+. +.+.+.++.
T Consensus 187 s~~Ll~~ay~~L~~L~~~~~~-------~~--~~~r~~~l~~~l~e---~IL~------------~~~~~~~~~~~~l~~ 242 (282)
T PF10521_consen 187 SLELLQAAYPALLSLLKTQEN-------DD--SNPRSTWLDKILRE---GILS------------SMEHESSFSYPRLRT 242 (282)
T ss_pred hHHHHHHHHHHHHHHHHhhcc-------CC--cccchHHHHHHHHH---HHhh------------hceeccccCchhHHH
Confidence 788888888888887664331 10 00111122222222 1111 11111 135677777
Q ss_pred HHHHHHhhhhccCchhhhhhccHHHHHHHHHHHhccCCCh
Q 000730 1243 NAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADA 1282 (1326)
Q Consensus 1243 aA~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp 1282 (1326)
.....+..++..+.-.-. .....++..|-. ..+||+.
T Consensus 243 ~ll~~l~~~i~~lGi~~~--~hL~rii~~l~~-~l~npf~ 279 (282)
T PF10521_consen 243 VLLQQLPPIIDELGISSV--KHLQRIIPVLSQ-ILENPFG 279 (282)
T ss_pred HHHHHHHHHHHHhccHHH--HHHHHHHHHHHH-HhcCCCc
Confidence 777777766666553222 122555666666 5667653
No 180
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=52.64 E-value=97 Score=42.26 Aligned_cols=110 Identities=21% Similarity=0.157 Sum_probs=84.5
Q ss_pred HHHHHHHhhcCCCChhHHHHHhhhccCCcchhhhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhccCCcCCcchhHH
Q 000730 1026 QMVEALCRHVSDESPTVRGLCLRGLVQIPSIHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILL 1105 (1326)
Q Consensus 1026 ~~i~~L~~~l~D~~~~VR~lsLrGLgnl~~~~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~ 1105 (1326)
+....+...+..+.+.||-.+.|.+|.+...--..-...+++.++..+++.+.-+.-++...+-.++..+...++.++..
T Consensus 816 ~~l~~l~~~~~s~~~a~r~~~ar~i~~~~k~~~~e~m~~v~~~~~~ll~~~~~~~~r~~a~e~~~~l~~~l~~~l~~~~~ 895 (1549)
T KOG0392|consen 816 SLLPRLFFFVRSIHIAVRYAAARCIGTMFKSATRETMATVINGFLPLLGDLDKFVRRQGADELIELLDAVLMVGLVPYNP 895 (1549)
T ss_pred hhhhHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHhhhhhHHHHHHHHHHhhcccccccce
Confidence 34567777889999999999999999886441222234567778888887776666666666666666666677777777
Q ss_pred hHHhhhcCcCcCCChHHHHHHHHHHHHhhh
Q 000730 1106 NLSVRLRNLQVSMNVKMRRNAFAAFGALSN 1135 (1326)
Q Consensus 1106 ~l~~~lrpffede~~~vR~aAi~LfG~L~~ 1135 (1326)
=++.-|.+...|..+.||.+|-..|..+..
T Consensus 896 Llv~pllr~msd~~d~vR~aat~~fa~lip 925 (1549)
T KOG0392|consen 896 LLVVPLLRRMSDQIDSVREAATKVFAKLIP 925 (1549)
T ss_pred eehhhhhcccccchHHHHHHHHHHHHHHhc
Confidence 777778889999999999999999999987
No 181
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=52.38 E-value=2.8e+02 Score=35.13 Aligned_cols=146 Identities=19% Similarity=0.160 Sum_probs=94.0
Q ss_pred hhhhHHHHhccCCChhHHHHHHHHHHhhchhhhh-h-hhhhhccccCC-----CCCCCChHH-HHHHHHHHHHHh-----
Q 000730 1151 AMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEI-G-VYGIFNSHCFN-----SDHRSDYET-FVRDLTRQFVQH----- 1217 (1326)
Q Consensus 1151 ~~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL~~-~-l~~lf~~~~~~-----~~~~l~~~~-f~~~i~k~L~~~----- 1217 (1326)
..++|++.=-.|++.+|+..+-..|.++..-++- . +..+|.-+ .+ +++...... .-..|..+|.++
T Consensus 237 ~~~~~~liAsad~~~~V~~~ae~~LKr~~~~~ed~~~V~~L~~Ly-~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~~Aa~ 315 (501)
T PF13001_consen 237 ERFPPLLIASADSNSSVSDRAEDLLKRLSVSLEDPDLVDRLFDLY-LGKGIPPENGRPPASPRLQEKILSLLSKSVIAAT 315 (501)
T ss_pred hHHhheeeEEeCCcchHHHHHHHHHhhcCCCCCCHHHHHHHHHHH-HhcCCchhcCCCCCCHHHHHHHHHHHHHhHHHHh
Confidence 4678888888999999999999999999988666 3 35555543 21 111111111 222344444332
Q ss_pred CcchHHHHHHHHHHhhcCC--ChhHHHHHHHHH---hhhhccCchhhhhhccHHHHHHHHHHHhcc--------CCChhH
Q 000730 1218 FPSRIDSYMGSTIQAFEAP--WPIIQANAIYFS---SSILCLCDDQHILSLFYTQVFGLLVVKLSQ--------SADAIV 1284 (1326)
Q Consensus 1218 ~~~~~~~~l~~~l~y~kS~--~~~IR~aA~~fi---G~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~--------Dpdp~V 1284 (1326)
.+..+...+.. =+.|+ ...+|..|..|+ +....+.+.+....+. +.+.+.+.. +.+ -.+...
T Consensus 316 ~~~~~~~i~~~---~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~-~~i~~~g~p-~~~~~~~~~~~~~~~~l 390 (501)
T PF13001_consen 316 SFPNILQIVFD---GLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLR-PVILSQGWP-LIQDSSSQSNSSEDIEL 390 (501)
T ss_pred CCccHHHHHhc---cccCCccccccchhcchhhhcchHHhhhcCHHHHHHHH-HHHHhcCcc-ccccccccCCCcccHHH
Confidence 22222222222 34455 778999999999 8888888877765543 445555555 342 257889
Q ss_pred HHHHHHHHHHHHHHcccc
Q 000730 1285 RATCSSSLGWLLKSINSH 1302 (1326)
Q Consensus 1285 R~~Aa~aL~~l~k~~~~~ 1302 (1326)
|..|=+|||.|.|.....
T Consensus 391 R~~aYe~lG~L~~~~p~l 408 (501)
T PF13001_consen 391 RSLAYETLGLLAKRAPSL 408 (501)
T ss_pred HHHHHHHHHHHHccCccc
Confidence 999999999999866554
No 182
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=51.97 E-value=46 Score=42.24 Aligned_cols=105 Identities=20% Similarity=0.156 Sum_probs=74.1
Q ss_pred HHHHHhhcCCCChhHHHHHhhhccCCcch-----hhhhhHHH----HHHHHHhhccCCChhHHHHHHHHHHHHhccCCcC
Q 000730 1028 VEALCRHVSDESPTVRGLCLRGLVQIPSI-----HIHQYATQ----VLSVILALLDDLDESVQLTAVSCLLTILKSSSKD 1098 (1326)
Q Consensus 1028 i~~L~~~l~D~~~~VR~lsLrGLgnl~~~-----~v~~~~~~----lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~ 1098 (1326)
++.+.+-+..++-+.|.-.+...||+..+ ++..+.++ +++.+.+-|.|...-++..|++++.+|.+.-...
T Consensus 301 ~~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~ 380 (1128)
T COG5098 301 YEHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKT 380 (1128)
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCcccc
Confidence 44555667888999999999999999754 33333344 4455556666667779999999999999875533
Q ss_pred Cc-chhHHhHHhhhcCcCcCCChHHHHHHHHHHHHhhh
Q 000730 1099 AV-EPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSN 1135 (1326)
Q Consensus 1099 ~~-~~~l~~l~~~lrpffede~~~vR~aAi~LfG~L~~ 1135 (1326)
.- +.-+..++. |. ..|-+..||..||.+|..|.-
T Consensus 381 ~~~r~ev~~lv~--r~-lqDrss~VRrnaikl~SkLL~ 415 (1128)
T COG5098 381 VGRRHEVIRLVG--RR-LQDRSSVVRRNAIKLCSKLLM 415 (1128)
T ss_pred cchHHHHHHHHH--HH-hhhhhHHHHHHHHHHHHHHHh
Confidence 21 122333333 33 456789999999999999985
No 183
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=50.81 E-value=11 Score=27.42 Aligned_cols=27 Identities=30% Similarity=0.464 Sum_probs=20.1
Q ss_pred HHHHHhhhccCCcchhhhhhHHHHHHHHHhhccC
Q 000730 1042 VRGLCLRGLVQIPSIHIHQYATQVLSVILALLDD 1075 (1326)
Q Consensus 1042 VR~lsLrGLgnl~~~~v~~~~~~lL~all~~L~d 1075 (1326)
||.-+.++||+++. +..++.++..|+|
T Consensus 1 VR~~Aa~aLg~igd-------~~ai~~L~~~L~d 27 (27)
T PF03130_consen 1 VRRAAARALGQIGD-------PRAIPALIEALED 27 (27)
T ss_dssp HHHHHHHHHGGG-S-------HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCC-------HHHHHHHHHHhcC
Confidence 79999999999987 5566777766643
No 184
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=50.04 E-value=52 Score=43.25 Aligned_cols=128 Identities=14% Similarity=0.142 Sum_probs=83.1
Q ss_pred hhHHHHHHHHHHhhc-CCCChhHHHHHhhhccCCcch---hhhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhcc--
Q 000730 1021 DSLLEQMVEALCRHV-SDESPTVRGLCLRGLVQIPSI---HIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKS-- 1094 (1326)
Q Consensus 1021 ~~l~~~~i~~L~~~l-~D~~~~VR~lsLrGLgnl~~~---~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~-- 1094 (1326)
..+.+..+-.|.+-+ .+.+..+|-=.+=++|.+-.+ .+.+|. |-+-..|.|++.-|+-.++.-|+++|+.
T Consensus 963 ~~LaKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YTam~d~Yi----P~I~~~L~Dp~~iVRrqt~ilL~rLLq~~~ 1038 (1529)
T KOG0413|consen 963 DRLAKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYTAMTDRYI----PMIAASLCDPSVIVRRQTIILLARLLQFGI 1038 (1529)
T ss_pred hHHHHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHHHHHHHhh----HHHHHHhcCchHHHHHHHHHHHHHHHhhhh
Confidence 344444555555555 345666666555566766654 566774 4567788999999999999999999975
Q ss_pred CCcCCcchhHHhHHhhhcCcCcCCChHHHHHHHHHHHHhhhcCCCcchHHHHHHHHhhhhHHHHhccCCCh
Q 000730 1095 SSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDL 1165 (1326)
Q Consensus 1095 l~~~~~~~~l~~l~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~LvpLLlHL~D~~~ 1165 (1326)
..|. +.+++.. ---.-|++++||.-|=.+||++.... .+.- + .+++|--++||+|-..
T Consensus 1039 vKw~--G~Lf~Rf----~l~l~D~~edIr~~a~f~~~~vL~~~-~P~~-f-----~~~FVe~i~~ln~~~~ 1096 (1529)
T KOG0413|consen 1039 VKWN--GELFIRF----MLALLDANEDIRNDAKFYISEVLQSE-EPNF-F-----PLNFVEYIIALNQARR 1096 (1529)
T ss_pred hhcc--hhhHHHH----HHHHcccCHHHHHHHHHHHHHHHhhc-Cccc-h-----HHHHHHHHHHHHHHHH
Confidence 2232 2333332 22346899999999999999999832 1111 1 2456666777766443
No 185
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=47.99 E-value=3.3e+02 Score=33.03 Aligned_cols=34 Identities=26% Similarity=0.267 Sum_probs=26.8
Q ss_pred HHHHHHHHhccC-CChhHHHHHHHHHHHHHHHcccc
Q 000730 1268 VFGLLVVKLSQS-ADAIVRATCSSSLGWLLKSINSH 1302 (1326)
Q Consensus 1268 l~~~L~~~Ll~D-pdp~VR~~Aa~aL~~l~k~~~~~ 1302 (1326)
++.+|.. +-.+ +|+.++.+|+-=||.+.+-++..
T Consensus 335 L~~~L~~-li~~~~d~~l~~KAtlLL~elL~la~~l 369 (371)
T PF14664_consen 335 LLEALVE-LIESSEDSSLSRKATLLLGELLHLASRL 369 (371)
T ss_pred hHHHHHH-HHhcCCCchHHHHHHHHHHHHHHHHHhc
Confidence 5667777 4544 59999999999999998877654
No 186
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=47.44 E-value=8.5e+02 Score=32.65 Aligned_cols=395 Identities=11% Similarity=0.096 Sum_probs=185.8
Q ss_pred hhHHHHHHHHHHHHHhcCChhHHHHHHHHHHH----hcccCCCcchhhHHHHHHHHhhhcHH--------HHHHHHHHHH
Q 000730 273 DHSALLHRCLGILLQKVADRNYVCDKIDWMYK----QANIAIPTNRLGLAKAMGLVAASHLD--------AVLEMLKGIL 340 (1326)
Q Consensus 273 ~eK~fL~k~lG~~L~~~~~~~~V~~~L~~ll~----~~~~~~~~ereG~A~~~G~~A~~Hld--------~vL~~L~~~~ 340 (1326)
.--+||+.-+|-.++..+..-.+-.|++.++- -+.|-...+---+-.+||.+|+..+. ++...+....
T Consensus 458 ~ll~~L~~~l~q~~aa~d~~p~s~~~tEaci~~~~sva~~~~~t~~~~i~rl~~~~asik~S~~n~ql~~Tss~~igs~s 537 (982)
T KOG2022|consen 458 GLLDFLIDTLEQALAAGDEDPDSLNRTEACIFQFQSVAEYLGETESTWIPRLFETSASIKLSAPNPQLLSTSSDLIGSLS 537 (982)
T ss_pred HHHHHHHHHHHHhhhccCCCchHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHhccccccccCChhHHHHHHHHHHHHH
Confidence 34478888888889888844444456665543 23455555555688889998887654 3333332222
Q ss_pred hhhccccch--hhhh-hcccc-cccchhHHHHHHHHHHHHHHHhcCChhhHHHHHHHhhHhHHHHhhhh--cCchhHHHH
Q 000730 341 DNIGQSLFQ--RLLS-FFSNS-YRMEESDDIHAALALMYGYAAKYAPSTVIEARIDALVGTNMLSRLLH--VRHHTAKQA 414 (1326)
Q Consensus 341 ~~~~~~~~~--~~l~-~~k~~-~~~~e~~~~ks~l~l~yG~va~~ap~~~il~~ve~~I~~~i~~~f~~--~kd~~~K~a 414 (1326)
.--+...+. -.+. .|.-- ..+.... .+...-.++..|| +.+.+..|. +++ ...-+.. ....+..+.
T Consensus 538 ~~l~e~P~~ln~sl~~L~~~Lh~sk~s~q-----~i~tl~tlC~~C~-~~L~py~d~-~~a-~~~e~l~~~~~~~S~~~k 609 (982)
T KOG2022|consen 538 NWLGEHPMYLNPSLPLLFQGLHNSKESEQ-----AISTLKTLCETCP-ESLDPYADQ-FSA-VCYEVLNKSNAKDSDRLK 609 (982)
T ss_pred HHHhcCCcccCchHHHHHHHhcCchHHHH-----HHHHHHHHHHhhh-hhCchHHHH-HHH-HHHHHhcccccCchHHHH
Confidence 111011000 0000 11100 1111111 1222556677775 455666665 332 2222221 234456777
Q ss_pred HHHHHHHHHHHHhhhhhcCCCcCCCCHHHHHHHHHHHhccCCCCCCCCchhhhHhHHHHHHHHhhcccccCCCCChhHHH
Q 000730 415 VITAIDLLGRAVINAAENGASFPLKKRDQLLDYILTLMGREENDSFADSSIELLHTQALALSACTTLVTVEPKLTIETRN 494 (1326)
Q Consensus 415 ~l~si~~i~~av~~~~~~~~~f~f~~k~eLl~~l~~li~~ep~~~l~s~~~~l~~vr~~am~a~t~L~~L~P~l~~e~~~ 494 (1326)
+++||.-+.+.+.+.. .-|.-..|++.+..-++.- +.|-.+ ...
T Consensus 610 lm~sIGyvls~~~pEe------~~kyl~~lin~il~qle~~----------------------------l~~~i~--~~e 653 (982)
T KOG2022|consen 610 LMKSIGYVLSRLKPEE------IPKYLMKLINPILSQLEIN----------------------------LAPGID--DQE 653 (982)
T ss_pred HHHHHHHHHHhccHHh------HHHHHHHHHHHHHHHHHHh----------------------------hcCCCC--CHH
Confidence 8888877777765321 1112223333333222211 122221 112
Q ss_pred HHHHHhhhccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCcccHHHHHHHHHHHHHHhcChhHHHhhHHHHHHHHHHH
Q 000730 495 HVMKATLGFFALPNDPIDVVNPLIDNLITLLCAILLTSGEDGRSRADQLLHILRQIDQYVSSPVEYQRRRSCLAVYEMLL 574 (1326)
Q Consensus 495 ~ll~~c~~v~~lp~~~~~l~~~~~~al~~lL~~ll~~~~~d~~~~~~~L~~~l~~l~pwl~S~~~~eR~RA~~~~~~lL~ 574 (1326)
+-+.+|+ .+..+..|.++++-+...+ .-..-.....||=+++...-|.+++..+-+++.
T Consensus 654 ~~l~~~~---------------~l~~iS~LftSL~~~~~~~------d~d~~~~~~~~~qq~~il~v~~k~i~~~~kv~s 712 (982)
T KOG2022|consen 654 NHLRIAF---------------QLNTISALFTSLINKKDII------DTDQPEQREEPFQQFPILQVLQKAIPVFEKVLS 712 (982)
T ss_pred HHHHHHH---------------HHHHHHHHHhccCCCCccc------cccchhhhccccccCCHHHHHHHHHHHHHHHHH
Confidence 2222222 1122344445554443321 112233466788888888888888888777777
Q ss_pred HHHhh--hhcccccCCCCCCccchhhhhhhhhccCCCCCCcccCCchhhhhhhhHHHHhhccccCCChhHHHHHHHHHHH
Q 000730 575 KFRTL--CVIGYCALGCHGSCTHIKQIDRAVLGNFSNLPSAYVLPSREALCLGNRVIMYLPRCADTDSEVRKISAQILDQ 652 (1326)
Q Consensus 575 ~~~~~--~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~ps~f~~~~~~f~~lG~Lvg~l~prC~D~~~~iR~~A~~~i~~ 652 (1326)
.+.+. -|...|..-.|+ .....+| |..| -.+.+=..++++.++|.=+-.++-...+-+=+
T Consensus 713 ~~~~~s~vve~~C~i~~~~--------------v~~~~~s-F~~p--~l~~l~~Fi~r~~~~~~a~tl~l~~~~l~~~~- 774 (982)
T KOG2022|consen 713 MWLGLSDVVEASCIIMVKG--------------VRSLLTS-FPEP--MLPSLCPFIVRFLTSCLAVTLSLIAACLLAKS- 774 (982)
T ss_pred HHhcchhHHHHHHHHHHhc--------------ccccccc-chhh--hHHHHHHHHHHhccchHHHHHHHHHHHHHhhh-
Confidence 55431 111233211122 1112233 4222 12456677888999997665444433322211
Q ss_pred HHHHHhhCCCCCCCCCCcchhhhhhhhhhcHHHHHHhccCC-CCC--hhHHHHHHHHHHHccCC------hhHHHHHHH-
Q 000730 653 LFSISLSLPRPVGSSSGIDLELSYGALSSLEDVIAILRSDA-SID--PSEVFNRIVSSVCILLT------KDELVATLH- 722 (1326)
Q Consensus 653 Ll~I~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~-~~~--~~~~~~~i~~~i~~~L~------~~el~~ll~- 722 (1326)
+. ++--.....+. ...+.+ -+....... .++ .-..|..+...+-|+.| .-..+.++.
T Consensus 775 ---~~------~~~~~lv~~~~-~~~~q~---sl~lf~~~~f~n~~Di~~~~~~~v~~ilkk~P~~~~~~~~~~ts~i~~ 841 (982)
T KOG2022|consen 775 ---TV------EQCKPLVGQDM-ANAFQQ---SLLLFEQHPFSNQPDIYLQLIGFVRQILKKIPKFLEPSMLAFTSLILI 841 (982)
T ss_pred ---cc------ccccccHHHHH-HHHHHH---HHHHHhccCCCCCchHHHHHHHHHHHHHHhCcCccccchHHHHHHHHH
Confidence 00 00000000000 111111 111111111 112 22222223333333333 345677888
Q ss_pred HHHHhccCCChhhHHHHHHHHHHHHhhhcccccccchhhHHH
Q 000730 723 SCTTAICDRTKQSAEGAIQAVVEFVTKRGNELSETDVSRTTQ 764 (1326)
Q Consensus 723 ~ll~~L~d~~~~~~~~A~~~L~~~l~~rg~~L~e~~V~~I~~ 764 (1326)
..+.+|+.|++.-.++|++.++.++...++..-.+ |-+.+.
T Consensus 842 ~a~~ll~~pE~~~i~aa~qF~t~~~~~~~s~~~~t-v~~~V~ 882 (982)
T KOG2022|consen 842 CAFILLNSPEPTTIRAASQFLTALATYATSHDLVT-VTSVVA 882 (982)
T ss_pred HHHHhcCCCccHHHHHHHHHHHHHHhhcccchhHH-HHHHHH
Confidence 88999999999999999999999988777644233 444433
No 187
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=46.77 E-value=26 Score=27.86 Aligned_cols=29 Identities=21% Similarity=0.283 Sum_probs=25.9
Q ss_pred hhhhHHHHhccCCChhHHHHHHHHHHhhc
Q 000730 1151 AMLPRLILHIYDDDLSVRQACRNTLKQVA 1179 (1326)
Q Consensus 1151 ~~LvpLLlHL~D~~~~V~~ack~tL~~~a 1179 (1326)
+.+++|+-.|.+++++|++.|-.||+.++
T Consensus 12 g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 12 GGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp THHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 56888888899999999999999998875
No 188
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=46.75 E-value=22 Score=28.89 Aligned_cols=25 Identities=32% Similarity=0.464 Sum_probs=21.6
Q ss_pred HHHHHHHHhhcCCCChhHHHHHhhh
Q 000730 1025 EQMVEALCRHVSDESPTVRGLCLRG 1049 (1326)
Q Consensus 1025 ~~~i~~L~~~l~D~~~~VR~lsLrG 1049 (1326)
..+.+.+.+++.|++|.||..++.-
T Consensus 17 ~~v~~~i~~rl~D~s~~VR~aav~l 41 (42)
T PF12765_consen 17 SDVQSAIIRRLSDSSPSVREAAVDL 41 (42)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHH
Confidence 3578899999999999999998863
No 189
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=44.91 E-value=2.6e+02 Score=30.53 Aligned_cols=83 Identities=8% Similarity=0.035 Sum_probs=54.8
Q ss_pred HHHHHHHHHHhCcchHHHHHHHHHHhhcCCChhHHHHHHHHHhhhhccCchhhhhhccHHHHHHHHHHHhccCCChhHHH
Q 000730 1207 VRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRA 1286 (1326)
Q Consensus 1207 ~~~i~k~L~~~~~~~~~~~l~~~l~y~kS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~ 1286 (1326)
...+|..+.......-..+......+.+|+.+-.|++|....-..+.. -+.+.++..+.. +.+|++..||.
T Consensus 103 ~D~~~~~~~~~~~~~~~~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~--------~~~~~~l~~~~~-~~~d~~~~vq~ 173 (213)
T PF08713_consen 103 CDSLCSKLLGPLLKKHPEALELLEKWAKSDNEWVRRAAIVMLLRYIRK--------EDFDELLEIIEA-LLKDEEYYVQK 173 (213)
T ss_dssp HHHHTHHHHHHHHHHHGGHHHHHHHHHHCSSHHHHHHHHHCTTTHGGG--------CHHHHHHHHHHH-CTTGS-HHHHH
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHh--------cCHHHHHHHHHH-HcCCchHHHHH
Confidence 344444444443222244566667799999999999886432211111 344777888888 89999999999
Q ss_pred HHHHHHHHHHHH
Q 000730 1287 TCSSSLGWLLKS 1298 (1326)
Q Consensus 1287 ~Aa~aL~~l~k~ 1298 (1326)
..+-+|..+++.
T Consensus 174 ai~w~L~~~~~~ 185 (213)
T PF08713_consen 174 AIGWALREIGKK 185 (213)
T ss_dssp HHHHHHHHHCTT
T ss_pred HHHHHHHHHHHh
Confidence 999998887754
No 190
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=44.71 E-value=3.5e+02 Score=30.63 Aligned_cols=115 Identities=18% Similarity=0.167 Sum_probs=60.7
Q ss_pred cCCCChhHHHHHhhhccCCcchhhhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCc
Q 000730 1035 VSDESPTVRGLCLRGLVQIPSIHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNL 1114 (1326)
Q Consensus 1035 l~D~~~~VR~lsLrGLgnl~~~~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~l~~~lrpf 1114 (1326)
++|+++.|-+-++++.+++-. .++.-+ -.+.+..-.+++|..+..-+ ...
T Consensus 2 l~d~d~~v~K~~I~~~~~iy~--------~~~~~i---~~~~~~~~~W~~~~~lK~~I-------------------l~~ 51 (239)
T PF11935_consen 2 LNDEDPAVVKRAIQCSTSIYP--------LVFRWI---CVNPSDEQLWESMNELKDRI-------------------LSL 51 (239)
T ss_dssp CT-SSHHHHHHHHHHHHHHHH--------HHHHHH---S--HHHHHHHHHHHHHHHHH-------------------HHG
T ss_pred CCCCcHHHHHHHHHHHHHHHH--------HHHHHH---cCCchHHHHHHHHHHHHHHH-------------------HHH
Confidence 578999999999998777642 111111 01112335566665555422 224
Q ss_pred CcCCChHHHHHHHHHHHHhhhc-CCCc-------------------------chHHHHHHHHhhhhHHHHhccCCC--hh
Q 000730 1115 QVSMNVKMRRNAFAAFGALSNF-GVGS-------------------------QREAFLEQIHAMLPRLILHIYDDD--LS 1166 (1326)
Q Consensus 1115 fede~~~vR~aAi~LfG~L~~~-~~~~-------------------------~~~~~~eQv~~~LvpLLlHL~D~~--~~ 1166 (1326)
|+++++.||..|+.....++-. ..+. ....+.++..+.|--|+-+++++. +.
T Consensus 52 ~~~~~~gvk~~~iKFle~vIl~qs~~~~~~~~~~~~~~d~SL~~vp~~Hp~l~~~~Le~Ea~~lL~~Ll~~l~~~~i~~~ 131 (239)
T PF11935_consen 52 WDSENPGVKLAAIKFLERVILVQSPGSSDSPPRRGSPNDFSLSSVPPNHPLLNPQQLEAEANGLLDRLLDVLQSPHISSP 131 (239)
T ss_dssp GGSSSHHHHHHHHHHHHHHHHHTS---TTS---GGGTTS--GGGS-TT-SSS-HHHHHHHHHHHHHHHHHHHC-TT--HH
T ss_pred hcCCCchHHHHHHHHHHHHHHhcCCCCCCCccccccccCCCHHHcCCCCCcCCHHHHHHHHHHHHHHHHHHHhhcccchH
Confidence 6667777777777766665531 1110 122355555555666666666665 55
Q ss_pred HHHHHHHHHHhhc
Q 000730 1167 VRQACRNTLKQVA 1179 (1326)
Q Consensus 1167 V~~ack~tL~~~a 1179 (1326)
+..+|-.+|..++
T Consensus 132 ~~~a~insL~~Ia 144 (239)
T PF11935_consen 132 LLTAIINSLSNIA 144 (239)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5566655554444
No 191
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=43.03 E-value=6.3e+02 Score=29.90 Aligned_cols=266 Identities=17% Similarity=0.192 Sum_probs=133.9
Q ss_pred hHHHHHHHHh---hhhccccccchHHH---HHHHHHhhhcCCchhhHHHHHHHHHHhhcCCCChhHHHHHhhhccCCcch
Q 000730 983 EVQTICLILT---KSINRQQRFQREAA---AAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI 1056 (1326)
Q Consensus 983 ~~~~i~~~L~---~~L~s~~~~~Ri~a---~aflsELl~~~~~~~~l~~~~i~~L~~~l~D~~~~VR~lsLrGLgnl~~~ 1056 (1326)
.+|.++..|. +...-.++.+|-.. +..+-.|++-.. ...+..+.+-.|..++..++..|+.++++-+|-+...
T Consensus 34 eLpqiaaaLqldpdifgfeNenhrekttlcVscLERLfkake-gahlapnlmpdLQrGLiaddasVKiLackqigcilEd 112 (524)
T KOG4413|consen 34 ELPQIAAALQLDPDIFGFENENHREKTTLCVSCLERLFKAKE-GAHLAPNLMPDLQRGLIADDASVKILACKQIGCILED 112 (524)
T ss_pred hhHHHHHHHhcCCCCcccccccccchhhhHHHHHHHHHhhcc-chhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhc
Confidence 4556655542 12222445666553 334444554322 2355567788999999999999999999999987643
Q ss_pred ----hhhhh----HHHHHHHHHhhccCCChhHHHHHHHHHHHHhccCCcCCcchhHHhH---HhhhcCcCcCCChHHHHH
Q 000730 1057 ----HIHQY----ATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNL---SVRLRNLQVSMNVKMRRN 1125 (1326)
Q Consensus 1057 ----~v~~~----~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~l---~~~lrpffede~~~vR~a 1125 (1326)
.|..- -..+++-++..+...|+.|.-.|+..+++|-.. +.+.+.++.+= -.++|.+--+-++-+|.-
T Consensus 113 cDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrialf--paaleaiFeSellDdlhlrnlaakcndiaRvR 190 (524)
T KOG4413|consen 113 CDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALF--PAALEAIFESELLDDLHLRNLAAKCNDIARVR 190 (524)
T ss_pred CchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc--HHHHHHhcccccCChHHHhHHHhhhhhHHHHH
Confidence 11110 123455666667777899999999999988643 22222222110 001111112223333333
Q ss_pred HHHHHHHhhhcCCCcchHHHHHHHHhhhhHHHH-hccC-CChhHHHHHHHHHHhhc------hhhhh-hhhhhhccccCC
Q 000730 1126 AFAAFGALSNFGVGSQREAFLEQIHAMLPRLIL-HIYD-DDLSVRQACRNTLKQVA------PFMEI-GVYGIFNSHCFN 1196 (1326)
Q Consensus 1126 Ai~LfG~L~~~~~~~~~~~~~eQv~~~LvpLLl-HL~D-~~~~V~~ack~tL~~~a------~lL~~-~l~~lf~~~~~~ 1196 (1326)
-.+|.=.+.... .+...+--...|+.+|. -|+- ++.-|+-.|-.-....+ .|+-- .+-+++++--.+
T Consensus 191 VleLIieifSiS----pesaneckkSGLldlLeaElkGteDtLVianciElvteLaeteHgreflaQeglIdlicnIIsG 266 (524)
T KOG4413|consen 191 VLELIIEIFSIS----PESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEHGREFLAQEGLIDLICNIISG 266 (524)
T ss_pred HHHHHHHHHhcC----HHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhhhhhcchhhHHHHHHHHhhC
Confidence 333332322211 11111112234444433 2333 44455555543333322 12222 222333322111
Q ss_pred CCCCCChHHH--HHHHHHHHHH---------hCcchHHHHHHHHHHhhcCCChhHHHHHHHHHhhhhccCc
Q 000730 1197 SDHRSDYETF--VRDLTRQFVQ---------HFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCD 1256 (1326)
Q Consensus 1197 ~~~~l~~~~f--~~~i~k~L~~---------~~~~~~~~~l~~~l~y~kS~~~~IR~aA~~fiG~l~~~~~ 1256 (1326)
. ..=.|+.| +--+.|.+.+ .--+++-.++...+.-..+..+....+|+--+|.++.+..
T Consensus 267 a-dsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnte 336 (524)
T KOG4413|consen 267 A-DSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTE 336 (524)
T ss_pred C-CCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcc
Confidence 1 11123333 1111121111 1123445677888888899999999999999999988776
No 192
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=42.92 E-value=1.2e+02 Score=39.23 Aligned_cols=111 Identities=16% Similarity=0.161 Sum_probs=86.4
Q ss_pred hhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCcCCChHHHHHHHHHHHHhhhcCC
Q 000730 1059 HQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGV 1138 (1326)
Q Consensus 1059 ~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~l~~~lrpffede~~~vR~aAi~LfG~L~~~~~ 1138 (1326)
......+|+-++.+++|.+-.+.-++++++..+.+.+|...+...++--...+ +|-..+..||..+.-.||.+++..+
T Consensus 384 e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~vk~~ilP~l~~l--~~~tt~~~vkvn~L~c~~~l~q~lD 461 (700)
T KOG2137|consen 384 EEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPFVKQAILPRLKNL--AFKTTNLYVKVNVLPCLAGLIQRLD 461 (700)
T ss_pred HHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHHHHHHHHHHhhcc--hhcccchHHHHHHHHHHHHHHHHHH
Confidence 34567889999999999888999999999999999999776664444433444 7888999999999999999996432
Q ss_pred CcchHHHHHHHHhhhhHHHHhccCCChhHHHHHHHHHHhh
Q 000730 1139 GSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQV 1178 (1326)
Q Consensus 1139 ~~~~~~~~eQv~~~LvpLLlHL~D~~~~V~~ack~tL~~~ 1178 (1326)
+ -+|..-+.|++...+=.+|.+...|-......
T Consensus 462 ---~----~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l 494 (700)
T KOG2137|consen 462 ---K----AAVLDELLPILKCIKTRDPAIVMGFLRIYEAL 494 (700)
T ss_pred ---H----HHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 2 23555677888888888999998886555443
No 193
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.74 E-value=9.1e+02 Score=31.63 Aligned_cols=217 Identities=15% Similarity=0.137 Sum_probs=122.0
Q ss_pred HHHHHHHHhhccCCChhHHHHHHHHHHHHhccCCcC--C------cch-hHHhHHhhhcCcCcCCChHHHHHHHHHHHHh
Q 000730 1063 TQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKD--A------VEP-ILLNLSVRLRNLQVSMNVKMRRNAFAAFGAL 1133 (1326)
Q Consensus 1063 ~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~--~------~~~-~l~~l~~~lrpffede~~~vR~aAi~LfG~L 1133 (1326)
..+++++..--.+.-...+.-|+.-|+++....+-. + -.| ..++++--|.-+=.-|++..|+.-++..-.+
T Consensus 208 ~sLi~~lvk~~p~~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~evl~~i 287 (938)
T KOG1077|consen 208 TSLIEALVKKNPESYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARLNEVLERI 287 (938)
T ss_pred HHHHHHHHHcCCHHHhhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHH
Confidence 344555554433333346677778888877654422 0 012 2233333333333456688999999999888
Q ss_pred hhcCC------CcchHHHHHHHHhhhhHHHHhccCCChhHHHHHHHHHHhhchhhhhhhhhhhccccCCCCCCCChHHHH
Q 000730 1134 SNFGV------GSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEIGVYGIFNSHCFNSDHRSDYETFV 1207 (1326)
Q Consensus 1134 ~~~~~------~~~~~~~~eQv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL~~~l~~lf~~~~~~~~~~l~~~~f~ 1207 (1326)
..... .....--++-|+=..+.|..|+ |++++.-..|-..|+. |+.. + +-++.|=. +
T Consensus 288 Lnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~-D~e~~ll~~~~~~Lg~---fls~--------r----E~NiRYLa-L 350 (938)
T KOG1077|consen 288 LNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHL-DSEPELLSRAVNQLGQ---FLSH--------R----ETNIRYLA-L 350 (938)
T ss_pred HhccccCccccchHhhhhHHHHHHHHHHHHHHc-CCcHHHHHHHHHHHHH---Hhhc--------c----cccchhhh-H
Confidence 86322 1112223445667788999998 5555544444333332 2211 1 12334432 2
Q ss_pred HHHHHHHHHhC-cchHHHHHHHHHHhhc-CCChhHHHHHHHHHhhhhccCchhhhhhccHHHHHHHHHHHhccCCChhHH
Q 000730 1208 RDLTRQFVQHF-PSRIDSYMGSTIQAFE-APWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVR 1285 (1326)
Q Consensus 1208 ~~i~k~L~~~~-~~~~~~~l~~~l~y~k-S~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR 1285 (1326)
..+|+....++ .+.+..+..+.+.-+| .+...||+-|+-++=.+- .. -+.++++..|..+ +.--|+.+|
T Consensus 351 Esm~~L~ss~~s~davK~h~d~Ii~sLkterDvSirrravDLLY~mc-D~-------~Nak~IV~elLqY-L~tAd~sir 421 (938)
T KOG1077|consen 351 ESMCKLASSEFSIDAVKKHQDTIINSLKTERDVSIRRRAVDLLYAMC-DV-------SNAKQIVAELLQY-LETADYSIR 421 (938)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHh-ch-------hhHHHHHHHHHHH-HhhcchHHH
Confidence 46677666655 5677777888888999 888999998885543222 11 1234455555553 344788888
Q ss_pred HHHHHHHHHH-HHHccccccc
Q 000730 1286 ATCSSSLGWL-LKSINSHSWR 1305 (1326)
Q Consensus 1286 ~~Aa~aL~~l-~k~~~~~~~~ 1305 (1326)
.--+--...| -||.-..+|-
T Consensus 422 eeivlKvAILaEKyAtDy~Wy 442 (938)
T KOG1077|consen 422 EEIVLKVAILAEKYATDYSWY 442 (938)
T ss_pred HHHHHHHHHHHHHhcCCcchh
Confidence 7433333333 3777777773
No 194
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=42.54 E-value=1e+03 Score=32.10 Aligned_cols=138 Identities=11% Similarity=0.143 Sum_probs=85.6
Q ss_pred ChHHHHHHHHHHHHhhhcCCCcchHHHHHHHHhhhhHHHHhccCCChhHHHHHHHHHHhhchhhhhhhhhhhccccCCCC
Q 000730 1119 NVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEIGVYGIFNSHCFNSD 1198 (1326)
Q Consensus 1119 ~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL~~~l~~lf~~~~~~~~ 1198 (1326)
...+-..|+...-.+.+.+..+....+..+++..+.-..+|--|.. +-+.+..+|+. ++...+.++.+ |+++
T Consensus 630 ~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~--tlQ~~~EcLra---~Is~~~eq~~t---~~~e 701 (1005)
T KOG2274|consen 630 PAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHE--TLQNATECLRA---LISVTLEQLLT---WHDE 701 (1005)
T ss_pred CchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChH--HHHhHHHHHHH---HHhcCHHHHHh---hccC
Confidence 3788899999999999988888889999999999999999977653 33333333332 11224455555 4454
Q ss_pred CCCChHHHHHHHHHHHHHhCcchHHHHHHHHHHhhcCCChhHHHHHHHHHhhhhccCchhhhhhcc--HHHHHHHHHHHh
Q 000730 1199 HRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLF--YTQVFGLLVVKL 1276 (1326)
Q Consensus 1199 ~~l~~~~f~~~i~k~L~~~~~~~~~~~l~~~l~y~kS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~--~e~l~~~L~~~L 1276 (1326)
.+.+ -||+++.+.-+=+|.. -..|+.|+|-++..+-...-.+++ .+++..|...+|
T Consensus 702 ~g~~--------------------~~yImqV~sqLLdp~~--sds~a~~VG~lV~tLit~a~~el~~n~d~IL~Avisrm 759 (1005)
T KOG2274|consen 702 PGHN--------------------LWYIMQVLSQLLDPET--SDSAAAFVGPLVLTLITHASSELGPNLDQILRAVISRL 759 (1005)
T ss_pred CCcc--------------------HHHHHHHHHHHcCCcc--chhHHHHHhHHHHHHHHHHHHHhchhHHHHHHHHHHHH
Confidence 4433 2577777777766654 344566999665543322222222 344555544446
Q ss_pred ccCCChhHHH
Q 000730 1277 SQSADAIVRA 1286 (1326)
Q Consensus 1277 l~Dpdp~VR~ 1286 (1326)
++-+.+.|-.
T Consensus 760 q~ae~lsviQ 769 (1005)
T KOG2274|consen 760 QQAETLSVIQ 769 (1005)
T ss_pred HHhhhHHHHH
Confidence 6655555444
No 195
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.43 E-value=9.5e+02 Score=31.79 Aligned_cols=148 Identities=12% Similarity=0.173 Sum_probs=89.4
Q ss_pred ChhhHHHHHHHHHHHHhhc----CchhHHHHHHHHhhhhccccccchHHHHHHHHHhhhcCCchhhHHHHHHHHHHhhcC
Q 000730 961 DKEKWINLIGDVAGCVSIK----RPKEVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVS 1036 (1326)
Q Consensus 961 ~~e~~~~gV~lLAr~m~~~----~~~~~~~i~~~L~~~L~s~~~~~Ri~a~aflsELl~~~~~~~~l~~~~i~~L~~~l~ 1036 (1326)
+.-.+.+-.+.+-.+.+=+ ++.....++.-++-+++-++...+..|+..|-. +.+.++
T Consensus 13 ~~f~~l~k~~vlqe~r~fnespvn~r~c~~~lskllyll~qge~~~~~eate~ff~------------------~tKlfQ 74 (865)
T KOG1078|consen 13 NVFQHLEKTTVLQEARTFNESPVNPRKCRHILSKLLYLLNQGEHFGETEATELFFA------------------ITKLFQ 74 (865)
T ss_pred ccccChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHH------------------HHHHHh
Confidence 3444444445454444333 233455666666666666666666666543332 333345
Q ss_pred CCChhHHHHHhhhccCCcchhhhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCc
Q 000730 1037 DESPTVRGLCLRGLVQIPSIHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQV 1116 (1326)
Q Consensus 1037 D~~~~VR~lsLrGLgnl~~~~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~l~~~lrpffe 1116 (1326)
.-++..|+++=-|++.++.. ..-.-.+...++.-....++.+..-|+++|-.|++.-. +..+-.-+..+|-
T Consensus 75 skd~~LRr~vYl~Ikels~i--sedviivtsslmkD~t~~~d~yr~~AiR~L~~I~d~~m-------~~~iery~kqaiv 145 (865)
T KOG1078|consen 75 SKDVSLRRMVYLAIKELSKI--SEDVIIVTSSLMKDMTGKEDLYRAAAIRALCSIIDGTM-------LQAIERYMKQAIV 145 (865)
T ss_pred hcCHHHHHHHHHHHhhcccc--chhhhhhhHHHHhhccCCCcchhHHHHHHHHhhcCcch-------hHHHHHHHHhHee
Confidence 55677788777777777642 11223455666666655667799999999999987533 3334444567899
Q ss_pred CCChHHHHHHHHHHHHhhh
Q 000730 1117 SMNVKMRRNAFAAFGALSN 1135 (1326)
Q Consensus 1117 de~~~vR~aAi~LfG~L~~ 1135 (1326)
|-++.++.+|..-==+|..
T Consensus 146 d~~~avSsaalvss~hll~ 164 (865)
T KOG1078|consen 146 DKNPAVSSAALVSSYHLLP 164 (865)
T ss_pred ccccccchHHHHHHhhhhc
Confidence 9999999988755444443
No 196
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=42.03 E-value=1.3e+02 Score=31.90 Aligned_cols=30 Identities=27% Similarity=0.337 Sum_probs=21.4
Q ss_pred hHHHHHHHHHHhhcCCCChhHHHHHhhhccCCc
Q 000730 1022 SLLEQMVEALCRHVSDESPTVRGLCLRGLVQIP 1054 (1326)
Q Consensus 1022 ~l~~~~i~~L~~~l~D~~~~VR~lsLrGLgnl~ 1054 (1326)
.|++.+++.|... .++.+|.-++|-||.++
T Consensus 10 ~LL~~L~~iLk~e---~s~~iR~E~lr~lGilG 39 (160)
T PF11865_consen 10 ELLDILLNILKTE---QSQSIRREALRVLGILG 39 (160)
T ss_pred HHHHHHHHHHHhC---CCHHHHHHHHHHhhhcc
Confidence 3445555555444 46999999999999886
No 197
>COG5234 CIN1 Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones / Cytoskeleton]
Probab=41.30 E-value=2.2e+02 Score=36.76 Aligned_cols=120 Identities=21% Similarity=0.315 Sum_probs=83.0
Q ss_pred hhhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCc-Cc----------CCChHHHHH
Q 000730 1057 HIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNL-QV----------SMNVKMRRN 1125 (1326)
Q Consensus 1057 ~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~l~~~lrpf-fe----------de~~~vR~a 1125 (1326)
..+.|.+.+++-+.+.+.+.+..++.++..+++++...++|....+++- ++...-+. |- +.|+-+-..
T Consensus 239 ~sh~~l~~iV~f~~~s~Ss~~~~~rf~~a~~~aki~srl~w~l~~sfi~-ii~~~~en~~~s~l~~~cdii~tnel~w~~ 317 (993)
T COG5234 239 ESHIYLEVIVDFLLSSVSSIDSFVRFSAAKGLAKIISRLPWNLAESFID-IIELMTENMFLSPLENTCDIIITNELVWHG 317 (993)
T ss_pred chhHHHHHHHHHHHcCcccccHHHHHHHHhhHHHHHhhcccccHHHHHH-HHHhcccccchhhhhCccceeecchHHHHH
Confidence 4667778888888888888888999999999999999999888777654 55444333 11 244556667
Q ss_pred HHHHHHHhhhcCCCc-------------------------------------------chHHHHHHHHhhhhHHHHh--c
Q 000730 1126 AFAAFGALSNFGVGS-------------------------------------------QREAFLEQIHAMLPRLILH--I 1160 (1326)
Q Consensus 1126 Ai~LfG~L~~~~~~~-------------------------------------------~~~~~~eQv~~~LvpLLlH--L 1160 (1326)
+|.-|| |++.+.-+ ....+-+++..+|.-|++. +
T Consensus 318 ~i~~~a-la~~~~id~~d~~i~~iI~kg~~y~~~~~~~v~g~~IRdss~f~vWs~~r~~S~s~~~~lqt~L~hll~~~al 396 (993)
T COG5234 318 AILFFA-LAGAGLIDYSDCLILPIIEKGLSYEVRYGTRVTGQSIRDSSCFFVWSFYRCYSKSAIEGLQTNLIHLLLQTAL 396 (993)
T ss_pred HHHHHH-HhhccccchhhhhhhhheccccceeehheeeeccceeecccceeeeeeeeccccccchhHHHHHHHHHHhhhh
Confidence 777776 44311100 1233445555556666665 6
Q ss_pred cCCChhHHHHHHHHHHhh
Q 000730 1161 YDDDLSVRQACRNTLKQV 1178 (1326)
Q Consensus 1161 ~D~~~~V~~ack~tL~~~ 1178 (1326)
-||+-.||.++..||...
T Consensus 397 FDpel~vRr~a~Aal~E~ 414 (993)
T COG5234 397 FDPELNVRRAATAALFEV 414 (993)
T ss_pred cCchhhhhhHHHHHHHHH
Confidence 799999999988887654
No 198
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=40.56 E-value=1.6e+02 Score=34.13 Aligned_cols=132 Identities=14% Similarity=0.157 Sum_probs=79.3
Q ss_pred CCcchhhhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhccCCcCC--------cchhHHhHHhhhcCcC-----cCC
Q 000730 1052 QIPSIHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDA--------VEPILLNLSVRLRNLQ-----VSM 1118 (1326)
Q Consensus 1052 nl~~~~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~--------~~~~l~~l~~~lrpff-----ede 1118 (1326)
++....+..+-+-++|+++..+||.+..+...++..|..++....... +..++-+......-|. +++
T Consensus 107 ~~~~~~i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~ 186 (282)
T PF10521_consen 107 QLDRPWISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDE 186 (282)
T ss_pred cCCcchHHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchh
Confidence 444446778889999999999999999999999999999999766443 2333333222221111 255
Q ss_pred ChHHHHHHHHHHHHhhhc---CCCcchHHHH-HHHHhhhhHHHHhccC-CChhHHHHHHHHHHhhchhhh
Q 000730 1119 NVKMRRNAFAAFGALSNF---GVGSQREAFL-EQIHAMLPRLILHIYD-DDLSVRQACRNTLKQVAPFME 1183 (1326)
Q Consensus 1119 ~~~vR~aAi~LfG~L~~~---~~~~~~~~~~-eQv~~~LvpLLlHL~D-~~~~V~~ack~tL~~~a~lL~ 1183 (1326)
...+=..|+...-.|.+. .++..+.... +-+..++..-+.|-.+ +++.++..--..+..+..-||
T Consensus 187 s~~Ll~~ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lG 256 (282)
T PF10521_consen 187 SLELLQAAYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELG 256 (282)
T ss_pred hHHHHHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhc
Confidence 666666777777776552 1222233333 3344446666666655 455666554444444443333
No 199
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=40.30 E-value=3.9e+02 Score=28.97 Aligned_cols=117 Identities=15% Similarity=0.164 Sum_probs=76.6
Q ss_pred cCcCcCCChHHHHHHHHHHHHhhhcCCCcchHHHHHHHHhhhhHHHHhccCCChhHHHHHHHHHHhhc----hhh-----
Q 000730 1112 RNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVA----PFM----- 1182 (1326)
Q Consensus 1112 rpffede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a----~lL----- 1182 (1326)
..++-+.++.+|.+|+.+.+-+.+.|- ..| ..+++.|+--.-|+++.|+..+...+.... .++
T Consensus 14 l~~~~~~~~~vr~~Al~~l~~il~qGL---vnP-----~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~~~~~ 85 (187)
T PF12830_consen 14 LELCLSSDDSVRLAALQVLELILRQGL---VNP-----KQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVESRYS 85 (187)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHhcCC---CCh-----HHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 346678899999999999999998542 222 147777888888999999999987777764 222
Q ss_pred hh-hhhhhhccccCCCCCCCC---hHHHHHHHHHHHHHhCcchHHHHHHHHHHhhcCCC
Q 000730 1183 EI-GVYGIFNSHCFNSDHRSD---YETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPW 1237 (1326)
Q Consensus 1183 ~~-~l~~lf~~~~~~~~~~l~---~~~f~~~i~k~L~~~~~~~~~~~l~~~l~y~kS~~ 1237 (1326)
.- +..--|++....+..+.. ...++..+...+. .....-..|+.+.+..|....
T Consensus 86 ~gi~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~-~~r~~R~~Fl~~l~k~f~~~~ 143 (187)
T PF12830_consen 86 EGIRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLR-SNRKSRRKFLKSLLKQFDFDL 143 (187)
T ss_pred HHHHHHHHHHHHhcCCccccccccchHHHHHHHHHHh-cccHhHHHHHHHHHHHHHhhc
Confidence 22 333333443222222222 4567777776555 555666778888888777653
No 200
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=40.00 E-value=1.9e+02 Score=29.46 Aligned_cols=90 Identities=6% Similarity=0.032 Sum_probs=62.7
Q ss_pred HHHHHHHHHHhCcchHHHHHHHHHHhhcCCChhHHHHHHHHHhhhhccCchhhhhhc-cHHHHHHHHHHHhccCCCh---
Q 000730 1207 VRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSL-FYTQVFGLLVVKLSQSADA--- 1282 (1326)
Q Consensus 1207 ~~~i~k~L~~~~~~~~~~~l~~~l~y~kS~~~~IR~aA~~fiG~l~~~~~~~~~~~~-~~e~l~~~L~~~Ll~Dpdp--- 1282 (1326)
+++|++.-.. .++.....+.-...-+++..++||.=|-..+-++....+.+....+ ..-.++..++. -..-|||
T Consensus 22 ~~Eia~~t~~-s~~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~-f~g~~Dp~~G 99 (122)
T cd03572 22 YEEIAKLTRK-SVGSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECAN-YKGPPDPLKG 99 (122)
T ss_pred HHHHHHHHHc-CHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHH-cCCCCCcccC
Confidence 3455553333 5566666666666778888899999899999999988875554332 22335666666 4665555
Q ss_pred -----hHHHHHHHHHHHHHHH
Q 000730 1283 -----IVRATCSSSLGWLLKS 1298 (1326)
Q Consensus 1283 -----~VR~~Aa~aL~~l~k~ 1298 (1326)
.||..|.+++..++-+
T Consensus 100 d~~~~~VR~~A~El~~~if~~ 120 (122)
T cd03572 100 DSLNEKVREEAQELIKAIFSY 120 (122)
T ss_pred cchhHHHHHHHHHHHHHHhcc
Confidence 8999999999998754
No 201
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=39.83 E-value=8.9e+02 Score=30.69 Aligned_cols=75 Identities=15% Similarity=0.147 Sum_probs=44.6
Q ss_pred HHHHHHHhhcCCCChhHHHHHhhhccCCcch-hhhhhHHHHHHHHHhhccCCChh--HHHHHHHHHHHHhccCCcCCcch
Q 000730 1026 QMVEALCRHVSDESPTVRGLCLRGLVQIPSI-HIHQYATQVLSVILALLDDLDES--VQLTAVSCLLTILKSSSKDAVEP 1102 (1326)
Q Consensus 1026 ~~i~~L~~~l~D~~~~VR~lsLrGLgnl~~~-~v~~~~~~lL~all~~L~d~d~~--V~leAm~~L~~lL~~l~~~~~~~ 1102 (1326)
.++..|.+.+..++...|..++-|||-.-.+ +. ..+++-+..-+-+.|.+ ++.-|-.+|+.+.--.-..++.+
T Consensus 450 palalLs~yl~s~s~k~~~aaiLGlg~afsGt~~----eevl~lL~Pi~~std~pie~~~~asltLg~vFvGtcngD~ts 525 (881)
T COG5110 450 PALALLSNYLQSSSSKHVIAAILGLGAAFSGTQA----EEVLELLQPIMFSTDSPIEVVFFASLTLGSVFVGTCNGDLTS 525 (881)
T ss_pred hHHHHHHHhccCCchHHHHHHHhhhHHhhcCCcH----HHHHHHhhhhhcCCCCcHHHHHHHHHhhhheEeeccCchHHH
Confidence 3556677777777888888888899876544 22 33444444445555664 44445555666655444455544
Q ss_pred hH
Q 000730 1103 IL 1104 (1326)
Q Consensus 1103 ~l 1104 (1326)
.+
T Consensus 526 ~i 527 (881)
T COG5110 526 LI 527 (881)
T ss_pred HH
Confidence 33
No 202
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=39.34 E-value=6.3e+02 Score=32.47 Aligned_cols=152 Identities=11% Similarity=0.086 Sum_probs=87.0
Q ss_pred hhccccCcHHHHHHHHHHhhhccCC---CChhhHHHHHHHHHHHHHhc------CChhHHHHHHHHHHHhcccCCCcchh
Q 000730 245 LDVVQETDWLISLGNAFTEQYVLYT---PDDDHSALLHRCLGILLQKV------ADRNYVCDKIDWMYKQANIAIPTNRL 315 (1326)
Q Consensus 245 l~~i~d~~W~~~L~~el~~q~~~y~---~~~~eK~fL~k~lG~~L~~~------~~~~~V~~~L~~ll~~~~~~~~~ere 315 (1326)
-..++|.+|.++=.+.++=-+.+-. +...||.|+...+--.|+-| +||++|.+.|.-.+.+ |.
T Consensus 487 arq~dg~EWsw~nlNtLcWAIGSISGamsE~~EkrF~VnviKdLL~LcemKrgKdnKAVvASnIMyvvGQ--Yp------ 558 (1053)
T COG5101 487 ARQLDGKEWSWNNLNTLCWAIGSISGAMSEVNEKRFFVNVIKDLLALCEMKRGKDNKAVVASNIMYVVGQ--YP------ 558 (1053)
T ss_pred HHHhcCCccchhhHhHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhecceeeeecc--ch------
Confidence 3567888999876666665555554 34788999988776666544 7888887666554441 11
Q ss_pred hHHHHHHHHhhhcHHHHHHHHHHHHhhhccccchhhhhhcccccccchhHHHHHHHHHHHHHHHhcCChhhHHHHHH---
Q 000730 316 GLAKAMGLVAASHLDAVLEMLKGILDNIGQSLFQRLLSFFSNSYRMEESDDIHAALALMYGYAAKYAPSTVIEARID--- 392 (1326)
Q Consensus 316 G~A~~~G~~A~~Hld~vL~~L~~~~~~~~~~~~~~~l~~~k~~~~~~e~~~~ks~l~l~yG~va~~ap~~~il~~ve--- 392 (1326)
-|=.+--+-|.+|..||=+|... .+ |.++-..--.|=.|+..||-.-+.++--
T Consensus 559 ----RFLkahw~FLkTVv~KLFEFMhE---------------~H-----EGvqDMACDtFiKIvqKC~~hFv~Qq~gesE 614 (1053)
T COG5101 559 ----RFLKAHWSFLKTVVKKLFEFMHE---------------DH-----EGVQDMACDTFIKIVQKCPVHFVTQQEGESE 614 (1053)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHhh---------------hh-----hhHHhhhHHHHHHHHHhCcHHHhhcCCCCCC
Confidence 12223445678888888777642 11 1222222233456788887665555432
Q ss_pred ---HhhHhHHHHhhhhcCchhHHHHHHHHHHHHHHHHhhh
Q 000730 393 ---ALVGTNMLSRLLHVRHHTAKQAVITAIDLLGRAVINA 429 (1326)
Q Consensus 393 ---~~I~~~i~~~f~~~kd~~~K~a~l~si~~i~~av~~~ 429 (1326)
..|++|+-+ ..+--.+.-|-.|.+|..++-.++...
T Consensus 615 pFI~~Iirnl~k-tT~dL~pqQ~htfYeAcg~vIse~p~~ 653 (1053)
T COG5101 615 PFIVYIIRNLPK-TTGDLEPQQKHTFYEACGMVISEVPKT 653 (1053)
T ss_pred cHHHHHHHhhhh-hcccCChHHHhHHHHHHhHHHhccchh
Confidence 123332221 111234456677777777776665443
No 203
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=38.36 E-value=2.6e+02 Score=38.57 Aligned_cols=162 Identities=18% Similarity=0.206 Sum_probs=96.0
Q ss_pred hHHHHHHHHHHhhcCCCChhHHHHHhhhccCCcchhh---hhhHHHHHHHHHhhccCCCh--hHHHHHHHHHHHHhccCC
Q 000730 1022 SLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSIHI---HQYATQVLSVILALLDDLDE--SVQLTAVSCLLTILKSSS 1096 (1326)
Q Consensus 1022 ~l~~~~i~~L~~~l~D~~~~VR~lsLrGLgnl~~~~v---~~~~~~lL~all~~L~d~d~--~V~leAm~~L~~lL~~l~ 1096 (1326)
.+...+++...+++.|++-.||.-|.+-+..++...+ ..-...++..+.+.+.+-|+ .-.-.-|..|.++.-...
T Consensus 204 ~~~~~vl~~~i~~L~ds~ddv~~~aa~~l~~~~s~~v~l~~~~i~~lv~~l~~~l~~lddl~~s~~si~~ll~~l~~~~e 283 (1549)
T KOG0392|consen 204 QLLNLVLDFVIEGLEDSDDDVRSVAAQFLVPAPSIQVKLMVQKIAKLVHTLWSFLLELDDLSSSTASIMHLLDELCIENE 283 (1549)
T ss_pred HHHHHHHHHHHhhhhhcchHHHHHHHHHhhhhhHHHHhhhHhHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhhHH
Confidence 3445677888899999999999999998888775421 11123333333333333232 111222333333332210
Q ss_pred cCCc---chhHHhHHhhhcCcCcCCChHHHHHHHHHHHHhhhcCCCcc-----------hHHHHHHHHhhhhHHHHhccC
Q 000730 1097 KDAV---EPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQ-----------REAFLEQIHAMLPRLILHIYD 1162 (1326)
Q Consensus 1097 ~~~~---~~~l~~l~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~-----------~~~~~eQv~~~LvpLLlHL~D 1162 (1326)
...+ -+.-..++.++.||.-++=..+|.++.+..-.+.....++. +..|..-++...++.|.|+.+
T Consensus 284 vl~l~~~~n~~~~Lvp~~~p~l~~~i~sv~~a~l~~l~~lle~~~qs~~~~~~~l~~~~r~ifq~ll~e~~~e~L~~~~~ 363 (1549)
T KOG0392|consen 284 VLDLFEQQNLEVGLVPRLWPFLRHTISSVRRAALETLAMLLEADDQSDSWQIRILGKLFRKIFQILLLESFNEILDLSEK 363 (1549)
T ss_pred HHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccchhhhHHHHHHHHHHHHhCCcHHHHHhhhh
Confidence 0000 01113566778899999999999999999999887554433 223334456677788888887
Q ss_pred CChhH----HHHHHHHHHhhchhhh
Q 000730 1163 DDLSV----RQACRNTLKQVAPFME 1183 (1326)
Q Consensus 1163 ~~~~V----~~ack~tL~~~a~lL~ 1183 (1326)
.-..| ..+|.+.+.++.+.++
T Consensus 364 ~~v~v~~~~k~a~~~~~~~~~l~~~ 388 (1549)
T KOG0392|consen 364 VWVTVSKIEKTAAAYLLSWIYLLIQ 388 (1549)
T ss_pred eeeehHHHHHHHHHHHHHHHHhhhC
Confidence 65432 4566666666665443
No 204
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.84 E-value=1.1e+02 Score=40.76 Aligned_cols=136 Identities=13% Similarity=0.093 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhhHHHHhccCCChhHHHHHHHHHHhhchhhhh-hhhhhhc------------------------------
Q 000730 1143 EAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEI-GVYGIFN------------------------------ 1191 (1326)
Q Consensus 1143 ~~~~eQv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL~~-~l~~lf~------------------------------ 1191 (1326)
+.|...+...+.|++.|+.++++.|.+++..++.+++.-++. .+..+..
T Consensus 581 ~~F~~~L~~~ly~vl~k~a~~s~~is~vA~sc~~~I~~a~~y~s~~~lI~en~DYlv~sla~~L~~~~~s~~~~~Vl~vV 660 (1014)
T KOG4524|consen 581 EEFQPELMDYLYPVLEKLASPSEAISQVAQSCALRIADALNYGSPPHLIRENVDYLVNSLALRLNTSGMSPRVPDVLMVV 660 (1014)
T ss_pred HHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHcCCCChHHHHHhhhHHHHHHHHHHhccCCCCchhHHHHHHH
Q ss_pred -cccCCCCCCCCh-HHHHHHHHHHHHHhCcchHHHHHHHHHHhhcCCChhHHHHHHHHHh-hhhccCchhhhhhccH---
Q 000730 1192 -SHCFNSDHRSDY-ETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSS-SILCLCDDQHILSLFY--- 1265 (1326)
Q Consensus 1192 -~~~~~~~~~l~~-~~f~~~i~k~L~~~~~~~~~~~l~~~l~y~kS~~~~IR~aA~~fiG-~l~~~~~~~~~~~~~~--- 1265 (1326)
+ ..+++..+| ++.+.++|+.+-..+.-. |.+||.-=...||..+.+|+. .++++..+++..+...
T Consensus 661 l~--~s~~~~i~~l~dvvq~i~~~lD~yH~~~-------~~~~~~ll~s~ik~~~~~~~~~~il~~~~d~~~~~~~k~l~ 731 (1014)
T KOG4524|consen 661 LQ--YSDYGTIPNLKDVVQTIFKLLDYYHGYS-------CLQFFQLLHSIIKEMKKKYINDEILGHIADQHISQSTKVLN 731 (1014)
T ss_pred hh--cCCCCchhhHHHHHHHHHHHHHHhcccc-------hhHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHhh
Q ss_pred ------HHHHHHHHHHhccCCChhHHHHH
Q 000730 1266 ------TQVFGLLVVKLSQSADAIVRATC 1288 (1326)
Q Consensus 1266 ------e~l~~~L~~~Ll~Dpdp~VR~~A 1288 (1326)
+...+.... +.+|-.|..+.++
T Consensus 732 e~p~~~~e~~n~~~d-~~~~l~~~~~e~~ 759 (1014)
T KOG4524|consen 732 ELPTQVKELINDEND-LKDDLEPSNFEKD 759 (1014)
T ss_pred cchhhHHHhhhhHHH-HHHhhhhHHHHHH
No 205
>PF14222 MOR2-PAG1_N: Cell morphogenesis N-terminal
Probab=37.38 E-value=1e+03 Score=30.61 Aligned_cols=58 Identities=16% Similarity=0.127 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHhhhcCCCcchH-HHHHHHHhhhhHHHHhccCCChhHHHHHHHHHHhhchhh
Q 000730 1122 MRRNAFAAFGALSNFGVGSQRE-AFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFM 1182 (1326)
Q Consensus 1122 vR~aAi~LfG~L~~~~~~~~~~-~~~eQv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL 1182 (1326)
-....+.||....+....-..+ .=...+...|.....| .++.|+++|..+|.+++.-.
T Consensus 444 ~~~~~~~Lf~t~i~aiPrcL~~~i~~~~lielL~R~tvH---vd~~I~~~A~~aLk~la~~~ 502 (552)
T PF14222_consen 444 DQKPQLDLFRTCIQAIPRCLPSSIPFKSLIELLCRGTVH---VDPNIRESAAQALKRLARDK 502 (552)
T ss_pred cccchhHHHHHHHHHccccCCCCCcHHHHHHHHhccccc---CCHHHHHHHHHHHHHHHHcC
Confidence 3477889999988742221111 1124555666666666 47799999999999998654
No 206
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=37.37 E-value=1.1e+03 Score=33.77 Aligned_cols=106 Identities=13% Similarity=0.149 Sum_probs=66.6
Q ss_pred HHHHHHHHhhcCCCChhHHHHHhhhccCCcch-hhhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhccCCcCCcchh
Q 000730 1025 EQMVEALCRHVSDESPTVRGLCLRGLVQIPSI-HIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPI 1103 (1326)
Q Consensus 1025 ~~~i~~L~~~l~D~~~~VR~lsLrGLgnl~~~-~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~ 1103 (1326)
+..++.+...+..|.+.+|.-|+|.|++|... ..-.-.+.+..++-.-+-|....|+-.|+.-+|+-+-.- ++.+.-+
T Consensus 815 D~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~-~e~~~qy 893 (1692)
T KOG1020|consen 815 DPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSI-PELIFQY 893 (1692)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhcc-HHHHHHH
Confidence 44555666666777888888888888877643 222223556666777777766777777777777665432 2223333
Q ss_pred HHhHHhhhcCcCcCCChHHHHHHHHHHHHhhh
Q 000730 1104 LLNLSVRLRNLQVSMNVKMRRNAFAAFGALSN 1135 (1326)
Q Consensus 1104 l~~l~~~lrpffede~~~vR~aAi~LfG~L~~ 1135 (1326)
.-.|+.| .-|..-.||--+|....+++-
T Consensus 894 Y~~i~er----IlDtgvsVRKRvIKIlrdic~ 921 (1692)
T KOG1020|consen 894 YDQIIER----ILDTGVSVRKRVIKILRDICE 921 (1692)
T ss_pred HHHHHhh----cCCCchhHHHHHHHHHHHHHH
Confidence 3344443 356677788888887777764
No 207
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=37.28 E-value=47 Score=33.53 Aligned_cols=28 Identities=14% Similarity=0.294 Sum_probs=22.6
Q ss_pred HHHHHhhccCCChhHHHHHHHHHHHHhc
Q 000730 1066 LSVILALLDDLDESVQLTAVSCLLTILK 1093 (1326)
Q Consensus 1066 L~all~~L~d~d~~V~leAm~~L~~lL~ 1093 (1326)
-..+|..+.+.|++|..+|+.++++++.
T Consensus 88 K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 88 KERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 4567788888899999999999999874
No 208
>COG5234 CIN1 Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones / Cytoskeleton]
Probab=35.73 E-value=8.5e+02 Score=31.80 Aligned_cols=78 Identities=12% Similarity=-0.009 Sum_probs=46.0
Q ss_pred hhcCCChh----HHHHHHHHHh-hhhccCchhhhhhccHHHHHHHHHHHhccCCChhHHHHHHHHHHHHH--HHcccccc
Q 000730 1232 AFEAPWPI----IQANAIYFSS-SILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLL--KSINSHSW 1304 (1326)
Q Consensus 1232 y~kS~~~~----IR~aA~~fiG-~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~--k~~~~~~~ 1304 (1326)
|+-+.+.+ ||.-|...+. ++++......+ -+.+ +.-||-|..|..|-||+..+. +-|..+-.
T Consensus 699 Y~~d~rGDVgs~iR~~a~klm~SfL~kD~~~~~~----------y~iR-~~~dki~~lR~l~yqa~eqI~v~~~s~~~~~ 767 (993)
T COG5234 699 YLTDTRGDVGSWIRKPAMKLMSSFLVKDSSGKKL----------YIIR-QTFDKIDSLRGLAYQALEQIRVHYLSRRCEA 767 (993)
T ss_pred hccccccchhHHHHHHHHHHHHHHhhccccCCch----------hHHH-HhhcccHHHHhhhhhhhhheeeehhhhhhhh
Confidence 55555543 6887876655 55555432221 3566 678999999999999988765 22222222
Q ss_pred ccccccccccccccccc
Q 000730 1305 RSTRLERVESFRWGYES 1321 (1326)
Q Consensus 1305 ~~~~~~~~~~~~~~~~~ 1321 (1326)
+++.-- -.++|+||.+
T Consensus 768 ~~~~g~-~~~fr~g~~v 783 (993)
T COG5234 768 LTNIGN-RISFRNGPNV 783 (993)
T ss_pred hccccc-hheeecCCCC
Confidence 222221 2456666654
No 209
>PRK14707 hypothetical protein; Provisional
Probab=35.60 E-value=1.8e+03 Score=33.03 Aligned_cols=334 Identities=14% Similarity=0.012 Sum_probs=175.8
Q ss_pred HhhHHHHHHHHHHhhhcccCCCCCCCChHHHHHHHHHHHH-------HhhcchHHHHHHHhcCCCCChhhHHHHHHHHHH
Q 000730 902 KSYAPVLAALTLQLGSCHGLASSGQHEPLRAILTSFQAFC-------ECVGDLEMRKILARDGEQNDKEKWINLIGDVAG 974 (1326)
Q Consensus 902 ~~fp~Lf~aLL~ql~~~~~~~~~~~~~P~~~aleAlk~ll-------~~~g~~~~~~~L~~~g~W~~~e~~~~gV~lLAr 974 (1326)
.+=||-+...|.-+|-+-+ -.+|+.+..+|=.-+ ....-+++.+.|.--..|-+.......+..||.
T Consensus 789 aL~pQ~vAn~LNALSKWPe------~~~Cr~AA~~LA~rLa~dp~Lr~af~AQ~VANaLNALSKWPd~~~Cr~AA~aLA~ 862 (2710)
T PRK14707 789 VLKPREMTNALNALSKWPD------TPACAAAASALAARVADDPRLREAFDVQHVATVLNAMSKWPDNAVCAAAAGAMAE 862 (2710)
T ss_pred hcCHHHHHHHHHHhhcCCC------chHHHHHHHHHHHHHhcChhHHHhcCHHHHHHHHHHhccCCCchHHHHHHHHHHH
Confidence 3447766666555544332 245777666654333 334556677777777789988888889998998
Q ss_pred HHhhc-------CchhHHHHHHHHhhhhccccccchHHHHHHHHHhhhcCCchhhH----HHHHHHHHHhhcCCCChhHH
Q 000730 975 CVSIK-------RPKEVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSL----LEQMVEALCRHVSDESPTVR 1043 (1326)
Q Consensus 975 ~m~~~-------~~~~~~~i~~~L~~~L~s~~~~~Ri~a~aflsELl~~~~~~~~l----~~~~i~~L~~~l~D~~~~VR 1043 (1326)
.++.. .++++...++-|.+-- ..+..|.+|.+.-+++.+.+...+.+ +-+++|.|.+|=..+ .=|
T Consensus 863 RLa~e~~LR~aL~~QevantLNALSKWP--d~~~C~~AA~aLA~rL~~d~~Lrqal~aQ~VAN~LNALSKWPd~~--~Cr 938 (2710)
T PRK14707 863 RLADEPELRHTLTAHGVVIVLNALSKWP--NVPVCAAAASALAERLADEPELRKALSAHRVATALNALSKWPDIP--VCA 938 (2710)
T ss_pred HHhcChhhhhccchHHHHHHHhhhccCC--CcHHHHHHHHHHHHHHhcCHHHHhhccHHHHHHHHhhhccCCCch--HHH
Confidence 77542 3456777777777762 23445667777777777665442222 234677777776543 223
Q ss_pred HHHhhhccCCcch--hhhhhHHHHHHHHHhhccC-CChhHHHHHHHHHHHHh-------ccCCcCCcchhHHhHHhhhcC
Q 000730 1044 GLCLRGLVQIPSI--HIHQYATQVLSVILALLDD-LDESVQLTAVSCLLTIL-------KSSSKDAVEPILLNLSVRLRN 1113 (1326)
Q Consensus 1044 ~lsLrGLgnl~~~--~v~~~~~~lL~all~~L~d-~d~~V~leAm~~L~~lL-------~~l~~~~~~~~l~~l~~~lrp 1113 (1326)
..+..=-+.++.. ..+.+-++-+...+++|.. +|+..-..|...|..-| +.++.++++..+-.++. .|
T Consensus 939 ~Aa~aLA~rLa~d~~Lr~Aln~Q~lsNtLNALSKWPd~~~c~~AA~aLA~rL~~~~~LR~al~aQ~vAN~LNALSK--WP 1016 (2710)
T PRK14707 939 TAASALAERLSDDPDLREALDASNLPQVLNALSKWPDVPAGGEVVDALAERLVDEPALRNALDPIGMANALNALSK--WL 1016 (2710)
T ss_pred HHHHHHHHHhccChhhhhhccHHHHHHHHhhhccCCCchHHHHHHHHHHHHHhccHHHHhhcchHHHHHHHhhhhc--CC
Confidence 3332222233322 2344456667777788776 34444444444443322 44555555554433322 22
Q ss_pred cCcCCChHHHHHHHHHHHHhhhcCCCcchHHHHHHHH-hhhhHHHHhccCCChhHHHHHHHHHHhhchhhhh--hhhhhh
Q 000730 1114 LQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIH-AMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEI--GVYGIF 1190 (1326)
Q Consensus 1114 ffede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~-~~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL~~--~l~~lf 1190 (1326)
+.+.=|.+|..+=+.|.. +-...++|-.|=. ++|--|=- =|+.+ .|+.|-..++.-|-- .+..-|
T Consensus 1017 ----d~~~Cr~AA~~LA~rLa~--ep~L~~amdaQ~lan~LNALSK---WPde~---~Cr~Aa~aLA~rL~~d~~Lr~Al 1084 (2710)
T PRK14707 1017 ----QMPVCAATVEALAARLSN--DPGLCKALSSQGLTTVLNALCK---WPEMP---VCLAAASALAERLSDDLVLRNAL 1084 (2710)
T ss_pred ----CchHHHHHHHHHHHHhcc--CHhhhhhcchHHHHHHHHhhcc---CCCch---hHHHHHHHHHHHhhccHHHHHhh
Confidence 456677777777777654 1112234443322 22222111 11111 333333333321111 111100
Q ss_pred ccccCCCCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHH-hhcCCC-hhHHHHHHHHHhhhhccCchhhhhhccHHHH
Q 000730 1191 NSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQ-AFEAPW-PIIQANAIYFSSSILCLCDDQHILSLFYTQV 1268 (1326)
Q Consensus 1191 ~~~~~~~~~~l~~~~f~~~i~k~L~~~~~~~~~~~l~~~l~-y~kS~~-~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~l 1268 (1326)
.| ..+.++++ +.|=|. +.-|.+|.-+++-+.... +.+...+...+
T Consensus 1085 ---------------------------~a----Q~vAN~LNaLSKWP~~~~Cr~Aa~~LA~rL~~~~--~l~~~fd~q~v 1131 (2710)
T PRK14707 1085 ---------------------------DS----QGFGNALNALSKWPDSPVCAAAASALAKRLTDDA--GLRHVFDPINV 1131 (2710)
T ss_pred ---------------------------ch----HHHHHHHHHHhcCCCcHHHHHHHHHHHHHhcccc--chhccCCHHHH
Confidence 01 12222333 333333 337777877788776433 33444555666
Q ss_pred HHHHHHHhccCCChhHHHHHHHHHH
Q 000730 1269 FGLLVVKLSQSADAIVRATCSSSLG 1293 (1326)
Q Consensus 1269 ~~~L~~~Ll~Dpdp~VR~~Aa~aL~ 1293 (1326)
-++|-. |.+=|+..+.+.|+.+|.
T Consensus 1132 A~~LNA-LSKWp~~~~cr~Aa~~LA 1155 (2710)
T PRK14707 1132 SQALNA-LSKWPGTQACESAIDVLA 1155 (2710)
T ss_pred HHHHHH-HhcCCCchHHHHHHHHHH
Confidence 666666 666688888888887764
No 210
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.42 E-value=1.5e+02 Score=34.77 Aligned_cols=31 Identities=16% Similarity=0.298 Sum_probs=15.8
Q ss_pred HHHHHhhccCCChhHHHHHHHHHHHHhccCC
Q 000730 1066 LSVILALLDDLDESVQLTAVSCLLTILKSSS 1096 (1326)
Q Consensus 1066 L~all~~L~d~d~~V~leAm~~L~~lL~~l~ 1096 (1326)
|+.+..++...+..++..|+....+....++
T Consensus 207 L~~L~~~~~~~n~r~r~~a~~~~~~~v~rl~ 237 (334)
T KOG2933|consen 207 LRKLIPILQHSNPRVRAKAALCFSRCVIRLG 237 (334)
T ss_pred HHHHHHHHhhhchhhhhhhhccccccceecc
Confidence 3334444444455566656555555555544
No 211
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=34.96 E-value=2.4e+02 Score=28.81 Aligned_cols=88 Identities=10% Similarity=0.095 Sum_probs=66.9
Q ss_pred HHHHHHHHHHhCcchHHHHHHHHHHhhcCCChhHHHHHHHHHhhhhccCchhhhhhccHHHHHHHHHHHhccCCC--hhH
Q 000730 1207 VRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSAD--AIV 1284 (1326)
Q Consensus 1207 ~~~i~k~L~~~~~~~~~~~l~~~l~y~kS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpd--p~V 1284 (1326)
.-++|-.+-.. ++....-+...-.-++++.+.+..-|...+..++++.......++........|.. +..++. |.|
T Consensus 21 ~l~icD~i~~~-~~~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~-l~~~~~~~~~V 98 (133)
T smart00288 21 ILEICDLINST-PDGPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVK-LIKPKYPLPLV 98 (133)
T ss_pred HHHHHHHHhCC-CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHH-HHcCCCCcHHH
Confidence 34778776555 67777777777779999999999999999999999988777667777777788888 565543 338
Q ss_pred HHHHHHHHHHHH
Q 000730 1285 RATCSSSLGWLL 1296 (1326)
Q Consensus 1285 R~~Aa~aL~~l~ 1296 (1326)
|.++.+.+..-.
T Consensus 99 k~kil~li~~W~ 110 (133)
T smart00288 99 KKRILELIQEWA 110 (133)
T ss_pred HHHHHHHHHHHH
Confidence 888877765544
No 212
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=34.89 E-value=2.6e+02 Score=28.79 Aligned_cols=92 Identities=13% Similarity=0.113 Sum_probs=68.0
Q ss_pred ChHHHHHHHHHHHHHhCcchHHHHHHHHHHhhcCCChhHHHHHHHHHhhhhccCchhhhhhccHHHHHHHHHHHhccC-C
Q 000730 1202 DYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQS-A 1280 (1326)
Q Consensus 1202 ~~~~f~~~i~k~L~~~~~~~~~~~l~~~l~y~kS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~D-p 1280 (1326)
+++.+ -+||-.+-.. ++....-+...-..++++.+.+...|..++..++++.++....++......+.|.. +..+ +
T Consensus 22 Dw~~~-l~icD~i~~~-~~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~-l~~~~~ 98 (140)
T PF00790_consen 22 DWSLI-LEICDLINSS-PDGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVK-LIKSKK 98 (140)
T ss_dssp -HHHH-HHHHHHHHTS-TTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHH-HHHHTT
T ss_pred CHHHH-HHHHHHHHcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHH-HHccCC
Confidence 34434 4688855544 77777778887789999999999999999999999998777777766667777777 4443 2
Q ss_pred C-hh--HHHHHHHHHHHHH
Q 000730 1281 D-AI--VRATCSSSLGWLL 1296 (1326)
Q Consensus 1281 d-p~--VR~~Aa~aL~~l~ 1296 (1326)
. +. ||.++.+-+....
T Consensus 99 ~~~~~~Vk~k~l~ll~~W~ 117 (140)
T PF00790_consen 99 TDPETPVKEKILELLQEWA 117 (140)
T ss_dssp THHHSHHHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHHH
Confidence 2 22 8988887765544
No 213
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=34.53 E-value=2.5e+02 Score=34.35 Aligned_cols=109 Identities=17% Similarity=0.157 Sum_probs=70.0
Q ss_pred HHHHHhhhhccccccchHHHHHHHHHhhhcC-----CchhhHHHHHHHHHHh-hcCCCChhHHHHHhhhccCCcch---h
Q 000730 987 ICLILTKSINRQQRFQREAAAAALSEFVRYS-----GGFDSLLEQMVEALCR-HVSDESPTVRGLCLRGLVQIPSI---H 1057 (1326)
Q Consensus 987 i~~~L~~~L~s~~~~~Ri~a~aflsELl~~~-----~~~~~l~~~~i~~L~~-~l~D~~~~VR~lsLrGLgnl~~~---~ 1057 (1326)
++.++...+.|.+..--.++..++..|-+.- .+....++.+++.|.+ .-.|.|-.+...++-+|-|+... |
T Consensus 316 ~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~nk 395 (604)
T KOG4500|consen 316 FLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVSNK 395 (604)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCCch
Confidence 3344444444444333344444444444421 1123344556667766 67889999999999999998743 3
Q ss_pred hhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhccC
Q 000730 1058 IHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSS 1095 (1326)
Q Consensus 1058 v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l 1095 (1326)
.+-....+..|++.-+.-..++|+-.-+.+|+.+....
T Consensus 396 a~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~q 433 (604)
T KOG4500|consen 396 AHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQ 433 (604)
T ss_pred hhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhch
Confidence 33334556778888888888899999999999888654
No 214
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=34.40 E-value=37 Score=24.99 Aligned_cols=28 Identities=21% Similarity=0.284 Sum_probs=21.3
Q ss_pred hHHHHHhhhccCCcchhhhhhHHHHHHHHHhhccC
Q 000730 1041 TVRGLCLRGLVQIPSIHIHQYATQVLSVILALLDD 1075 (1326)
Q Consensus 1041 ~VR~lsLrGLgnl~~~~v~~~~~~lL~all~~L~d 1075 (1326)
.||..++.+||+++. +..++.+...|.|
T Consensus 2 ~vR~~aa~aLg~~~~-------~~a~~~L~~~l~d 29 (30)
T smart00567 2 LVRHEAAFALGQLGD-------EEAVPALIKALED 29 (30)
T ss_pred HHHHHHHHHHHHcCC-------HhHHHHHHHHhcC
Confidence 689999999999975 4556666666654
No 215
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.58 E-value=8.9e+02 Score=35.29 Aligned_cols=221 Identities=14% Similarity=0.114 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhc----chHHHHHHHhc---CCCC--ChhhHHHHHHHHHH-HHhhcCchhHHHHHHHHhhhhcccc
Q 000730 930 LRAILTSFQAFCECVG----DLEMRKILARD---GEQN--DKEKWINLIGDVAG-CVSIKRPKEVQTICLILTKSINRQQ 999 (1326)
Q Consensus 930 ~~~aleAlk~ll~~~g----~~~~~~~L~~~---g~W~--~~e~~~~gV~lLAr-~m~~~~~~~~~~i~~~L~~~L~s~~ 999 (1326)
|+....++|.+-..-| ..+....+... +.-. .+-.-.-+...+|| +-+....+-+..+....+.-+.|-.
T Consensus 849 ~~al~s~lk~l~e~~~~~~lg~e~v~~~~~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~~f~a~~aq~~fdklas~~ 928 (2067)
T KOG1822|consen 849 WQALLSALKYLAEFKGATSLGPEEVRSSALTLIVNSLINPNPKLRCAAAEALARLAQVVGSAPFVASLAQNSFDKLASAR 928 (2067)
T ss_pred HHHHHHHHHHHHhcccccccCHHHHHHHHHHHHhhhhccCChHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhcC
Q ss_pred ccchHHHHHHHHHhhhcCCc---hhhHHHHHHHHHHhhcCCCCh-hHHHHHhhhccCCcch---hhhhhHHHHHHHHHhh
Q 000730 1000 RFQREAAAAALSEFVRYSGG---FDSLLEQMVEALCRHVSDESP-TVRGLCLRGLVQIPSI---HIHQYATQVLSVILAL 1072 (1326)
Q Consensus 1000 ~~~Ri~a~aflsELl~~~~~---~~~l~~~~i~~L~~~l~D~~~-~VR~lsLrGLgnl~~~---~v~~~~~~lL~all~~ 1072 (1326)
+..+-+.....-..+..-++ ...-+.+.+..|..--.|+++ .|+.++|++|.-+... -.+.|...-+..++..
T Consensus 929 d~i~R~ghslalg~lhkyvgs~~s~qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~l 1008 (2067)
T KOG1822|consen 929 DPITRTGHSLALGCLHKYVGSIGSGQHLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKL 1008 (2067)
T ss_pred CcHHHHHHHHHHHHHHHhccCCCCchhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHH
Q ss_pred ccCCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCc--------------------CCChHHHHHHHHHHHH
Q 000730 1073 LDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQV--------------------SMNVKMRRNAFAAFGA 1132 (1326)
Q Consensus 1073 L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~l~~~lrpffe--------------------de~~~vR~aAi~LfG~ 1132 (1326)
|-. +++...+--.++++.+. +..+.+.++-.+...++|-++ +++..+-++||..|-+
T Consensus 1009 Lls-~p~~~~ev~q~~~R~~~--~~~~~~alittlgpeL~~N~~~d~t~~~rts~la~~allls~~d~lnqa~ai~clqq 1085 (2067)
T KOG1822|consen 1009 LLS-VPTSHVEVHQCYNRCFN--GDDDEDALITTLGPELGPNGDKDSTSTLRTSCLAACALLLSHSDPLNQAAAIKCLQQ 1085 (2067)
T ss_pred cCC-CCcchhhhhhhhccccc--cchhHHHHHHhcccccCCCCcccchhHHHHHHHHHHHHhcCCCccchHHHHHHHHHH
Q ss_pred hhhc-CCCcchHHHHHHHHhhh
Q 000730 1133 LSNF-GVGSQREAFLEQIHAML 1153 (1326)
Q Consensus 1133 L~~~-~~~~~~~~~~eQv~~~L 1153 (1326)
+.-| .+....+.|.-++...+
T Consensus 1086 lhlFapr~~n~~~lV~~L~~~l 1107 (2067)
T KOG1822|consen 1086 LHLFAPRHVNLDSLVLQLCSLL 1107 (2067)
T ss_pred HHhhcchhccHHHHHHHHHHHh
No 216
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=33.37 E-value=3.6e+02 Score=27.47 Aligned_cols=89 Identities=13% Similarity=0.058 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHhCcchHHHHHHHHHHhhcCCChhHHHHHHHHHhhhhccCchhhhhhccHHHHHHHHHHHhccC---CCh
Q 000730 1206 FVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQS---ADA 1282 (1326)
Q Consensus 1206 f~~~i~k~L~~~~~~~~~~~l~~~l~y~kS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~D---pdp 1282 (1326)
...++|-.+- ..++....-+...-..++++.+.+.-.|...+..++++.+.....++....-...|.. +..+ .++
T Consensus 20 ~il~icd~I~-~~~~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~-l~~~~~~~~~ 97 (133)
T cd03561 20 LNLELCDLIN-LKPNGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVK-IAKNSPKYDP 97 (133)
T ss_pred HHHHHHHHHh-CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHH-HhCCCCCCCH
Confidence 3446666554 3355666666666669999999999999999999999998766666665444445888 5654 588
Q ss_pred hHHHHHHHHHHHHH
Q 000730 1283 IVRATCSSSLGWLL 1296 (1326)
Q Consensus 1283 ~VR~~Aa~aL~~l~ 1296 (1326)
.||.++.+.+....
T Consensus 98 ~Vk~kil~ll~~W~ 111 (133)
T cd03561 98 KVREKALELILAWS 111 (133)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999888865544
No 217
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=33.21 E-value=6.6e+02 Score=32.57 Aligned_cols=278 Identities=17% Similarity=0.102 Sum_probs=136.5
Q ss_pred chhHHHHHHHHhhhhccccccchHHHHHHHHHhhhcCCchhhHHHHHHHHHHhhcCCCChhHHHHHhhhccCCcchhhhh
Q 000730 981 PKEVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSIHIHQ 1060 (1326)
Q Consensus 981 ~~~~~~i~~~L~~~L~s~~~~~Ri~a~aflsELl~~~~~~~~l~~~~i~~L~~~l~D~~~~VR~lsLrGLgnl~~~~v~~ 1060 (1326)
-|-+-..+.++-+++-+.++ .+.+++..=..+.++- ... --+.++..|.+.+..++..+|.-++-|||-.-.+.-
T Consensus 410 ~Wnvd~gL~qldkylys~~~-~ikaGaLLgigi~~~g-v~n-e~dpalALLsdyv~~~~s~~ri~aIlGLglayaGsq-- 484 (878)
T KOG2005|consen 410 LWNVDKGLEQLDKYLYSDES-YIKAGALLGIGISNSG-VFN-ECDPALALLSDYLQSSSSIHRIGAILGLGLAYAGSQ-- 484 (878)
T ss_pred eecchhhHHHHHHHhhcCCc-hhhhccceeeeeeccc-ccc-ccCHHHHHHHHhccCCCceeehHHhhhhHHhhcCCc--
Confidence 34556667777777775443 3333332222333321 111 124466778888888899999999999986533310
Q ss_pred hHHHHHHHHHhhccCCChh--HHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCcCC-----ChHHHHHHHHHHHHh
Q 000730 1061 YATQVLSVILALLDDLDES--VQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSM-----NVKMRRNAFAAFGAL 1133 (1326)
Q Consensus 1061 ~~~~lL~all~~L~d~d~~--V~leAm~~L~~lL~~l~~~~~~~~l~~l~~~lrpffede-----~~~vR~aAi~LfG~L 1133 (1326)
..+++.-+..-+.|.+.+ |+.-|-.+|+.|.--.-..++.+.+++ .|.|+. ..-+|-.|..| .+
T Consensus 485 -~e~V~~lL~Pi~~d~~~~~ev~~~aslsLG~IfvGscn~dvts~ilq------tlmekse~El~d~~~RFL~LGL--~l 555 (878)
T KOG2005|consen 485 -REEVLELLSPIMFDTKSPMEVVAFASLSLGMIFVGSCNEDVTSSILQ------TLMEKSETELEDQWFRFLALGL--AL 555 (878)
T ss_pred -hHHHHHHHhHHhcCCCCchhHHHHHHhhcceeEEecCChHHHHHHHH------HHHHhhhhhhhchHHHHHHHHH--HH
Confidence 123333334445555555 555555556666544334444332222 344443 34445444433 11
Q ss_pred hhcCCCcchHHHHHHHHhhhhHHHHhccCCChhHHHHHHHHHHhhc-----hhhhh-h--hhhhhccccCCCCCCCChHH
Q 000730 1134 SNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVA-----PFMEI-G--VYGIFNSHCFNSDHRSDYET 1205 (1326)
Q Consensus 1134 ~~~~~~~~~~~~~eQv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a-----~lL~~-~--l~~lf~~~~~~~~~~l~~~~ 1205 (1326)
.-.+.+...+++.+-+.. -+...++.|-..+..|+ +.|+. + +......|. .+++. +-+-
T Consensus 556 lflgkqe~~d~~~e~~~~-----------i~~~~~~~~~~lv~~caYaGTGnvl~Iq~q~ll~~cgE~~-~~~e~-~~~~ 622 (878)
T KOG2005|consen 556 LFLGKQESVDAVVETIKA-----------IEGPIRKHESILVKSCAYAGTGNVLKIQSQLLLSFCGEHD-ADLES-EQEL 622 (878)
T ss_pred HHhcccchHHHHHHHHHH-----------hhhHHHHHHHHHHHHhhccccCceEEechhhhhhhcCCCc-cchhh-hccc
Confidence 223444444444333221 13344555555555554 33333 1 111112221 11110 0000
Q ss_pred HHHHHHHH-HHHhC-cchHHHHHHHHHHhhcCCChhHHHHHHHHHhhhhccCchhhhhhccHHHHHHHHHHHhccCCChh
Q 000730 1206 FVRDLTRQ-FVQHF-PSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAI 1283 (1326)
Q Consensus 1206 f~~~i~k~-L~~~~-~~~~~~~l~~~l~y~kS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~ 1283 (1326)
.+--+.-. +.++- .+..-..+...+.| -.++||++-.+-.|.+.-.-| + --++..|.+ ..+|.|+.
T Consensus 623 avLgiAliAMgeeig~eM~lR~f~h~l~y---ge~~iRravPLal~llsvSNP-q-------~~vlDtLsk-~shd~D~e 690 (878)
T KOG2005|consen 623 AVLGIALIAMGEEIGSEMVLRHFGHLLHY---GEPHIRRAVPLALGLLSVSNP-Q-------VNVLDTLSK-FSHDGDLE 690 (878)
T ss_pred hhhhhhhhhhhhhhhhHHHHHHHHHHHHc---CCHHHHHHHHHHHhhhccCCC-c-------chHHHHHHH-hccCcchH
Confidence 00011111 11111 22333344444444 367899988888886543222 2 235777888 79999999
Q ss_pred HHHHHHHHHHHHHH
Q 000730 1284 VRATCSSSLGWLLK 1297 (1326)
Q Consensus 1284 VR~~Aa~aL~~l~k 1297 (1326)
|-..|--|+|.++.
T Consensus 691 va~naIfamGLiGA 704 (878)
T KOG2005|consen 691 VAMNAIFAMGLIGA 704 (878)
T ss_pred HHHHHHHHhccccC
Confidence 99999999998874
No 218
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=33.15 E-value=2.6e+02 Score=31.31 Aligned_cols=149 Identities=13% Similarity=0.122 Sum_probs=83.6
Q ss_pred ccCCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCcC-----CChHHHHHHHHHHHHhhhcCCCcchHHHHH
Q 000730 1073 LDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVS-----MNVKMRRNAFAAFGALSNFGVGSQREAFLE 1147 (1326)
Q Consensus 1073 L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~l~~~lrpffed-----e~~~vR~aAi~LfG~L~~~~~~~~~~~~~e 1147 (1326)
|++....-+..|+..|..+..+-+.+.+ -+--++..-|-||..- .-+-+|.+|....|+|.+.+ ..+..+-
T Consensus 109 l~~~~snRvcnaL~lLQclaShPetk~~-Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNd---sq~vi~f 184 (315)
T COG5209 109 LDERESNRVCNALNLLQCLASHPETKKV-FLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKND---SQYVIKF 184 (315)
T ss_pred cCchhhhHHHHHHHHHHHHhcCcchhee-eeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCC---CHHHHHH
Confidence 3334455777888888887766443321 1111233334455542 22569999999999999843 2333333
Q ss_pred HHHhhhhHHHHhccCCChhHHHHHHHHHHhhchhhhhhhhhhhccccCCCCCCCCh-----------HHHHHHHHHHHHH
Q 000730 1148 QIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEIGVYGIFNSHCFNSDHRSDY-----------ETFVRDLTRQFVQ 1216 (1326)
Q Consensus 1148 Qv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL~~~l~~lf~~~~~~~~~~l~~-----------~~f~~~i~k~L~~ 1216 (1326)
-.-.-+|||.+...|...+..+-- +.+....+ +++|.+++| ...++++..+++.
T Consensus 185 LltTeivPLcLrIme~gSElSktv--aifI~qki-------------l~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs 249 (315)
T COG5209 185 LLTTEIVPLCLRIMELGSELSKTV--AIFIFQKI-------------LGDDVGLQYICQTFERFYAVNLVLNSMVSQLVS 249 (315)
T ss_pred HHhhhHHHHHHHHHHhhhHHHHHH--HHHHHHHH-------------hccchhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344679999999999877665432 11222222 233344443 2345666777777
Q ss_pred hCcchHHHHHHHHHHhhc-CCChhHHH
Q 000730 1217 HFPSRIDSYMGSTIQAFE-APWPIIQA 1242 (1326)
Q Consensus 1217 ~~~~~~~~~l~~~l~y~k-S~~~~IR~ 1242 (1326)
..+.++-..+.-| |++ |..+++|+
T Consensus 250 ~~~~RLlKh~iRc--YlRLsd~p~aR~ 274 (315)
T COG5209 250 LGSTRLLKHAIRC--YLRLSDKPHARA 274 (315)
T ss_pred ccchhHHHHHHHH--heeecCCHhHHH
Confidence 7776644333322 444 45566666
No 219
>PF14961 BROMI: Broad-minded protein
Probab=32.70 E-value=2.1e+02 Score=39.30 Aligned_cols=197 Identities=14% Similarity=0.152 Sum_probs=116.8
Q ss_pred HHHHhhcCCC-ChhHHHHHhhhccCCcchhh--hhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhccCCcCCcchhHH
Q 000730 1029 EALCRHVSDE-SPTVRGLCLRGLVQIPSIHI--HQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILL 1105 (1326)
Q Consensus 1029 ~~L~~~l~D~-~~~VR~lsLrGLgnl~~~~v--~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~ 1105 (1326)
+.+.+.+.-. --.||.-|++-|-.+..+++ ...-+.+-..+..+|.|.|+.+...+|+-..+.+...+-....-+..
T Consensus 164 q~i~d~ld~~~P~evR~eAlq~Lc~~p~SDVls~E~W~~L~~~L~~~LsDpD~~is~~~L~f~Ak~fssSpl~~trEiYt 243 (1296)
T PF14961_consen 164 QLIADKLDPGQPKEVRLEALQILCSAPPSDVLSCESWSVLRENLTDALSDPDPEISDASLRFHAKMFSSSPLNMTREIYT 243 (1296)
T ss_pred HHHHHhcCCCCchHHHHHHHHHHhcCChhhccccccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccCCchhhhHHHHH
Confidence 4555555443 45799999999998887644 45667888899999999999999999999999999877666566777
Q ss_pred hHHhhhcCcCcCCChHHH---------------H-HHHHHHHHhhh----cCCCcchHHHHHHHH-hhhhHHHHhccCCC
Q 000730 1106 NLSVRLRNLQVSMNVKMR---------------R-NAFAAFGALSN----FGVGSQREAFLEQIH-AMLPRLILHIYDDD 1164 (1326)
Q Consensus 1106 ~l~~~lrpffede~~~vR---------------~-aAi~LfG~L~~----~~~~~~~~~~~eQv~-~~LvpLLlHL~D~~ 1164 (1326)
+++..+-..|-..+..+. . ..|+|.-+.-+ +..+ ..+.+.|.|. +.+.=|-.|... +
T Consensus 244 sL~~~l~~~Fls~~~~lptl~~giDi~~~~~~rLLk~vrLlneyq~E~ps~WiR-hpeK~mEeIVEsTLsLLs~~~~~-~ 321 (1296)
T PF14961_consen 244 SLANHLESYFLSQKNSLPTLSSGIDITFPDIERLLKKVRLLNEYQKEVPSFWIR-HPEKYMEEIVESTLSLLSTHHDQ-N 321 (1296)
T ss_pred HHHHHHHHHHHhccccCccccccccccCccHHHHHHHHHHHHHHHHhcchhhhc-CcHHHHHHHHHHHHHHhcccccC-C
Confidence 888777555533222222 1 12233222211 1111 2233444444 555544455433 3
Q ss_pred hhHHHHHHHHHHhhchhhhh-hhhhhhccccCCCCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHHhhcCCC
Q 000730 1165 LSVRQACRNTLKQVAPFMEI-GVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPW 1237 (1326)
Q Consensus 1165 ~~V~~ack~tL~~~a~lL~~-~l~~lf~~~~~~~~~~l~~~~f~~~i~k~L~~~~~~~~~~~l~~~l~y~kS~~ 1237 (1326)
.-+..++=..+ .++.- +.++.+-+. |-.|. .+ + ..+.+.|..+++..+..-+.||+.|+.+..
T Consensus 322 ~~~s~k~L~pi----~~lslLD~kA~WFkK-WmHg~-yS-R---~vvlr~L~kky~sli~~av~qCi~y~~~~~ 385 (1296)
T PF14961_consen 322 SLGSPKTLTPI----HFLSLLDPKAVWFKK-WMHGY-YS-R---TVVLRLLEKKYKSLIVNAVQQCIQYVESCE 385 (1296)
T ss_pred Ccccccccchh----hhhhhhccchHHHHH-HHhhc-ch-H---HHHHHHHccccchHHHHHHHHHHHHHHHhh
Confidence 22222221111 33333 444333332 54431 11 1 123556777888888899999999988654
No 220
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=32.13 E-value=1.1e+03 Score=29.45 Aligned_cols=94 Identities=15% Similarity=0.176 Sum_probs=61.2
Q ss_pred HHHHHHccCChhHHHHHHHHHHHhccCC-ChhhHHHHHHHHHHHHhhhcccccccchhhHHHHHHHHHhhcCcHHHHHHH
Q 000730 704 IVSSVCILLTKDELVATLHSCTTAICDR-TKQSAEGAIQAVVEFVTKRGNELSETDVSRTTQSLLSAAVHITDKHLRLET 782 (1326)
Q Consensus 704 i~~~i~~~L~~~el~~ll~~ll~~L~d~-~~~~~~~A~~~L~~~l~~rg~~L~e~~V~~I~~~I~~~l~~i~~~~~r~~~ 782 (1326)
++|.=.++++.+++..+|..++.-=... ......++-.++..++. .|.--.+. .+.++..++.-.... ...+.+
T Consensus 161 viKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~-y~~iP~~s-l~~~i~vLCsi~~~~---~l~~~~ 235 (464)
T PF11864_consen 161 VIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIIT-YGDIPSES-LSPCIEVLCSIVNSV---SLCKPS 235 (464)
T ss_pred HHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHH-cCcCChHH-HHHHHHHHhhHhccc---ccchhH
Confidence 4444447788899988888877762222 22333566667777775 45444344 778888887764433 566789
Q ss_pred HHHHHHHhhccC-chhHHHHHH
Q 000730 783 LGAISCLAENTN-SKIVFNEVL 803 (1326)
Q Consensus 783 l~ai~~La~~h~-~~vV~~~Ll 803 (1326)
.++|+-|.++|. ..+| ..|.
T Consensus 236 w~~m~nL~~S~~g~~~i-~~L~ 256 (464)
T PF11864_consen 236 WRTMRNLLKSHLGHSAI-RTLC 256 (464)
T ss_pred HHHHHHHHcCccHHHHH-HHHH
Confidence 999999997775 4455 6564
No 221
>PF05536 Neurochondrin: Neurochondrin
Probab=31.87 E-value=1.2e+03 Score=29.85 Aligned_cols=263 Identities=16% Similarity=0.144 Sum_probs=137.1
Q ss_pred HHHhhhcCCchhhHHHH-HHHHHHhhcCCCChhHHHHHhhhccCCcch-------hhhhhHHHHHHHHHhhccCCChhHH
Q 000730 1010 LSEFVRYSGGFDSLLEQ-MVEALCRHVSDESPTVRGLCLRGLVQIPSI-------HIHQYATQVLSVILALLDDLDESVQ 1081 (1326)
Q Consensus 1010 lsELl~~~~~~~~l~~~-~i~~L~~~l~D~~~~VR~lsLrGLgnl~~~-------~v~~~~~~lL~all~~L~d~d~~V~ 1081 (1326)
+.-+..++.+...+++. .+..|.+-..+ ++.....+++-|.++... +-......+++.+-..+........
T Consensus 123 L~~Ias~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~k 201 (543)
T PF05536_consen 123 LLAIASSPEGAKALLESGAVPALCEIIPN-QSFQMEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDK 201 (543)
T ss_pred HHHHHcCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchH
Confidence 33333344443333322 34444444433 555566666655554321 1223334556666666665566788
Q ss_pred HHHHHHHHHHhccCCcC-----CcchhHHhHHhhhcCcCc-CCChHHHHHHHHHHHHhhhcCCC-------c-chHHHHH
Q 000730 1082 LTAVSCLLTILKSSSKD-----AVEPILLNLSVRLRNLQV-SMNVKMRRNAFAAFGALSNFGVG-------S-QREAFLE 1147 (1326)
Q Consensus 1082 leAm~~L~~lL~~l~~~-----~~~~~l~~l~~~lrpffe-de~~~vR~aAi~LfG~L~~~~~~-------~-~~~~~~e 1147 (1326)
.++..-|+.+|...+.. ....-..+|..-|+..+. +-.+.-|..|..+.+.+....+. + ..+.|--
T Consensus 202 fell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~sr~~~~~R~~al~Laa~Ll~~~G~~wl~~~~~~~~~~F~~ 281 (543)
T PF05536_consen 202 FELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQSRLTPSQRDPALNLAASLLDLLGPEWLFADDKKSGKKFLL 281 (543)
T ss_pred HHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhChHhhcCCCCCCcccHHH
Confidence 88899999999987421 112233444444444443 45688899999999999874221 1 1122322
Q ss_pred H-HHhhhhHHHHhccC----CChhHHHHHHHHHHhhchhhhhhhhhhhccccCCCCCCCChHHHHHHHHHHHHHhCcchH
Q 000730 1148 Q-IHAMLPRLILHIYD----DDLSVRQACRNTLKQVAPFMEIGVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRI 1222 (1326)
Q Consensus 1148 Q-v~~~LvpLLlHL~D----~~~~V~~ack~tL~~~a~lL~~~l~~lf~~~~~~~~~~l~~~~f~~~i~k~L~~~~~~~~ 1222 (1326)
- |.-..|-.=.-|.+ .++.-.......|..|-.+++..+..+.+... .++..++.+.+. .+-+ .+
T Consensus 282 Llv~l~~VEir~~L~~L~~~~~~~~~~~~~~~L~~cf~ilE~~I~~l~~~~~-~~~~~~~~~~l~-kl~~--------~l 351 (543)
T PF05536_consen 282 LLVNLACVEIRMSLEELLEQLNPEEYPEKQRLLASCFSILEHFIGYLVRSLE-EESLDLDPDTLL-KLRT--------SL 351 (543)
T ss_pred HHHHHHHHHHHHHhHHhhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhccc-cccCCCCHHHHH-HHHH--------HH
Confidence 2 21122211112222 55555566778888888888886665555321 122334433332 3333 33
Q ss_pred HHHHHHHHHhhcCCChhHHHHHHHHHhhhhccCchhhhhhccHHHH---HHHHHHHhccCCChhHHHHHHHHHHHHHHHc
Q 000730 1223 DSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQV---FGLLVVKLSQSADAIVRATCSSSLGWLLKSI 1299 (1326)
Q Consensus 1223 ~~~l~~~l~y~kS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~l---~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k~~ 1299 (1326)
..-+...+.|+++-|.+-.+ +...+ ++.|-.-|..||+. .|..+..-|.+|.++.
T Consensus 352 ~e~~~~vle~L~~~~d~~~~---------------------d~~~vlAsvR~L~~WLaEe~~~-lr~~v~~Ll~~ll~~~ 409 (543)
T PF05536_consen 352 SETFSAVLEYLRDVWDESQK---------------------DPDFVLASVRVLGAWLAEETSA-LRKEVYGLLPFLLSLY 409 (543)
T ss_pred HHHHHHHHHHHHHhhhcccc---------------------chHHHHHHHHHHHHHHHhChHH-HHHHHHHHHHHHHHHH
Confidence 44566667788877772000 00122 22233324455555 7777777777777666
Q ss_pred cccccc
Q 000730 1300 NSHSWR 1305 (1326)
Q Consensus 1300 ~~~~~~ 1305 (1326)
+.-...
T Consensus 410 ~~~~~~ 415 (543)
T PF05536_consen 410 RESFQE 415 (543)
T ss_pred hhhhhh
Confidence 655433
No 222
>PRK14707 hypothetical protein; Provisional
Probab=31.68 E-value=2e+03 Score=32.51 Aligned_cols=336 Identities=12% Similarity=0.025 Sum_probs=179.3
Q ss_pred hHHHHHHHHHHHH-------HhhcchHHHHHHHhcCCCCChhhHHHHHHHHHHHHhhc-------CchhHHHHHHHHhhh
Q 000730 929 PLRAILTSFQAFC-------ECVGDLEMRKILARDGEQNDKEKWINLIGDVAGCVSIK-------RPKEVQTICLILTKS 994 (1326)
Q Consensus 929 P~~~aleAlk~ll-------~~~g~~~~~~~L~~~g~W~~~e~~~~gV~lLAr~m~~~-------~~~~~~~i~~~L~~~ 994 (1326)
.|+.+..+|=.-+ ....-+++.+.|.--..|-+.+.--.++..||..++.. +++++...++-|.+.
T Consensus 894 ~C~~AA~aLA~rL~~d~~Lrqal~aQ~VAN~LNALSKWPd~~~Cr~Aa~aLA~rLa~d~~Lr~Aln~Q~lsNtLNALSKW 973 (2710)
T PRK14707 894 VCAAAASALAERLADEPELRKALSAHRVATALNALSKWPDIPVCATAASALAERLSDDPDLREALDASNLPQVLNALSKW 973 (2710)
T ss_pred HHHHHHHHHHHHHhcCHHHHhhccHHHHHHHHhhhccCCCchHHHHHHHHHHHHhccChhhhhhccHHHHHHHHhhhccC
Confidence 4766666654322 33344555666666667998788888899999988642 445677777777766
Q ss_pred hccccccchHHHHHHHHHhhhcCCchhhH----HHHHHHHHHhhcCCCChhHHHHHhhhccCCcch--hhhhhHHHHHHH
Q 000730 995 INRQQRFQREAAAAALSEFVRYSGGFDSL----LEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI--HIHQYATQVLSV 1068 (1326)
Q Consensus 995 L~s~~~~~Ri~a~aflsELl~~~~~~~~l----~~~~i~~L~~~l~D~~~~VR~lsLrGLgnl~~~--~v~~~~~~lL~a 1068 (1326)
- ..+..+.+|.+.-.+|.+.+.....+ +-.++|.|.+|-.-+ .=|..+.+=-+.++.+ .-+..-.+-+..
T Consensus 974 P--d~~~c~~AA~aLA~rL~~~~~LR~al~aQ~vAN~LNALSKWPd~~--~Cr~AA~~LA~rLa~ep~L~~amdaQ~lan 1049 (2710)
T PRK14707 974 P--DVPAGGEVVDALAERLVDEPALRNALDPIGMANALNALSKWLQMP--VCAATVEALAARLSNDPGLCKALSSQGLTT 1049 (2710)
T ss_pred C--CchHHHHHHHHHHHHHhccHHHHhhcchHHHHHHHhhhhcCCCch--HHHHHHHHHHHHhccCHhhhhhcchHHHHH
Confidence 2 23445666666666666554332222 233677777776332 3333333322233322 223334555666
Q ss_pred HHhhccC-CChhHHHHHHHHHHHH-------hccCCcCCcchhHHhHHhhhcCcCcCCChHHHHHHHHHHHHhhhcCCCc
Q 000730 1069 ILALLDD-LDESVQLTAVSCLLTI-------LKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGS 1140 (1326)
Q Consensus 1069 ll~~L~d-~d~~V~leAm~~L~~l-------L~~l~~~~~~~~l~~l~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~ 1140 (1326)
.+++|.. ++++.--.|...|..- ...++.+++.+.+-.++. . -+.+.-|.+|..+=+.|+. .+.
T Consensus 1050 ~LNALSKWPde~~Cr~Aa~aLA~rL~~d~~Lr~Al~aQ~vAN~LNaLSK--W----P~~~~Cr~Aa~~LA~rL~~--~~~ 1121 (2710)
T PRK14707 1050 VLNALCKWPEMPVCLAAASALAERLSDDLVLRNALDSQGFGNALNALSK--W----PDSPVCAAAASALAKRLTD--DAG 1121 (2710)
T ss_pred HHHhhccCCCchhHHHHHHHHHHHhhccHHHHHhhchHHHHHHHHHHhc--C----CCcHHHHHHHHHHHHHhcc--ccc
Confidence 7777766 3444444444444332 223455555554443332 1 2457788888888888875 222
Q ss_pred chHHHHHH-HHhhhhHHHHhccCCChhHHHHHHHHHHhhchhhhh--hhhhhhccccCCCCCCCChHHHHHHHHHHHHHh
Q 000730 1141 QREAFLEQ-IHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEI--GVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQH 1217 (1326)
Q Consensus 1141 ~~~~~~eQ-v~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL~~--~l~~lf~~~~~~~~~~l~~~~f~~~i~k~L~~~ 1217 (1326)
....|--| |-+.+.-| --.-++ ..|+.|-..+|.-|-+ .+..-+.
T Consensus 1122 l~~~fd~q~vA~~LNAL-SKWp~~-----~~cr~Aa~~LA~RL~~d~~Lr~a~~-------------------------- 1169 (2710)
T PRK14707 1122 LRHVFDPINVSQALNAL-SKWPGT-----QACESAIDVLAATLANAPGLRNALS-------------------------- 1169 (2710)
T ss_pred hhccCCHHHHHHHHHHH-hcCCCc-----hHHHHHHHHHHHHhccchhhhhhcC--------------------------
Confidence 33344433 22222222 222222 2455555554443322 3222211
Q ss_pred CcchHHHHHHHHHH-hhcCCChh-HHHHHHHHHhhhhc-cCchhhhhhccHHHHHHHHHHHhccCCChhHHHHHHHHHHH
Q 000730 1218 FPSRIDSYMGSTIQ-AFEAPWPI-IQANAIYFSSSILC-LCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGW 1294 (1326)
Q Consensus 1218 ~~~~~~~~l~~~l~-y~kS~~~~-IR~aA~~fiG~l~~-~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~ 1294 (1326)
|.. +.++++ +.|=|..+ -|+++..+++.+.. ..+-......+.-++-+++-+ +..+.+...-..++-+...
T Consensus 1170 -~Q~----vAn~LNaLSKWp~~~ac~~A~~~La~rlG~a~~P~r~F~m~~lAqiaNa~sR-l~~~~~ed~~~~~~~a~~~ 1243 (2710)
T PRK14707 1170 -AQG----VAIALNALSKCLARPVCRSAFVLLAERAGSAELPWRQFEMRGIAVVANAMSR-LSPLDEEDDEQFRTLAVAK 1243 (2710)
T ss_pred -HHH----HHHHHHHhhcCcCcHHHHHHHHHHHHhhcCCCCCchhcCHHHHHHHHHHHHH-hhhcccchhHHHHHHHHHH
Confidence 111 112222 44445444 56655666666654 233344445667889999999 6654444444444666679
Q ss_pred HHHHcccccccccccccccc
Q 000730 1295 LLKSINSHSWRSTRLERVES 1314 (1326)
Q Consensus 1295 l~k~~~~~~~~~~~~~~~~~ 1314 (1326)
|++-..+.--+-.+|+.+|.
T Consensus 1244 L~~LA~HL~l~~erfe~A~~ 1263 (2710)
T PRK14707 1244 LQAMAGHLDLHRELFASASV 1263 (2710)
T ss_pred HHHHHHHHhhcHHHHhhccc
Confidence 99988887777777776654
No 223
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=31.17 E-value=8e+02 Score=27.58 Aligned_cols=153 Identities=14% Similarity=0.100 Sum_probs=84.4
Q ss_pred hhHHHHHHHHHHHHhhcC--chhHHHHHHHHhhhhc---c--ccccc-hHHHHHHHHHhhhc-CCchhhHHHHHHHHHHh
Q 000730 963 EKWINLIGDVAGCVSIKR--PKEVQTICLILTKSIN---R--QQRFQ-REAAAAALSEFVRY-SGGFDSLLEQMVEALCR 1033 (1326)
Q Consensus 963 e~~~~gV~lLAr~m~~~~--~~~~~~i~~~L~~~L~---s--~~~~~-Ri~a~aflsELl~~-~~~~~~l~~~~i~~L~~ 1033 (1326)
+.+.-+..++++-..+.. .+.+++++..+.-... + ....+ .++.++-.-++... |.....++..+...|.
T Consensus 53 ~~~~~~~rLl~~lw~~~~r~f~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~g~~ll~~ls~~L~- 131 (234)
T PF12530_consen 53 ELRYVALRLLTLLWKANDRHFPFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDHGVDLLPLLSGCLN- 131 (234)
T ss_pred hHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhhHHHHHHHHHHHHh-
Confidence 345566777777665542 2455555554222211 1 11111 23323333344432 2223334444444443
Q ss_pred hcCCCChhHHHHHhhhccCCcchhhhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhccCCcC--CcchhHHhHHhhh
Q 000730 1034 HVSDESPTVRGLCLRGLVQIPSIHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKD--AVEPILLNLSVRL 1111 (1326)
Q Consensus 1034 ~l~D~~~~VR~lsLrGLgnl~~~~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~--~~~~~l~~l~~~l 1111 (1326)
++.++.++.+|++||..+-..++-.+. ....++..-|+....+.+.+++..|-.++....-+ ....+-.++...+
T Consensus 132 --~~~~~~~~alale~l~~Lc~~~vvd~~-s~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~l 208 (234)
T PF12530_consen 132 --QSCDEVAQALALEALAPLCEAEVVDFY-SAWKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLL 208 (234)
T ss_pred --ccccHHHHHHHHHHHHHHHHHhhccHH-HHHHHHHHhcCCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHH
Confidence 888999999999999999766554433 33466666665556778888888888887665433 2444445555555
Q ss_pred cCcCcCCC
Q 000730 1112 RNLQVSMN 1119 (1326)
Q Consensus 1112 rpffede~ 1119 (1326)
..+-...+
T Consensus 209 W~~~~~~~ 216 (234)
T PF12530_consen 209 WEYTSSSD 216 (234)
T ss_pred Hhhccccc
Confidence 55444444
No 224
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=30.62 E-value=1.1e+03 Score=29.02 Aligned_cols=87 Identities=16% Similarity=0.059 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHhCcchHHHHHHHHHHhhcCCC-hhHHHHHHHHHhhhhccCchhhhhhccHHHHHHHHHHHhccCCCh
Q 000730 1204 ETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPW-PIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADA 1282 (1326)
Q Consensus 1204 ~~f~~~i~k~L~~~~~~~~~~~l~~~l~y~kS~~-~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp 1282 (1326)
+.|+++=...|-+++- ..+...+.+++++. |.+=+-|+.=||..+.++|.-. .-++.-..-.++++ |..-+||
T Consensus 350 e~FW~eNa~rlnenny----ellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk-~vv~k~ggKe~vM~-Llnh~d~ 423 (442)
T KOG2759|consen 350 EKFWRENADRLNENNY----ELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGK-AVVEKYGGKERVMN-LLNHEDP 423 (442)
T ss_pred cchHHHhHHHHhhccH----HHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHh-HHHHHhchHHHHHH-HhcCCCc
Confidence 4566655555555443 35666777888887 6677888888999999999322 12333334556777 7889999
Q ss_pred hHHHHHHHHHHHHH
Q 000730 1283 IVRATCSSSLGWLL 1296 (1326)
Q Consensus 1283 ~VR~~Aa~aL~~l~ 1296 (1326)
.||--|-.|...+-
T Consensus 424 ~Vry~ALlavQ~lm 437 (442)
T KOG2759|consen 424 EVRYHALLAVQKLM 437 (442)
T ss_pred hHHHHHHHHHHHHH
Confidence 99999999977664
No 225
>cd05394 RasGAP_RASA2 RASA2 (or GAP1(m)) is a member of the GAP1 family of Ras GTPase-activating proteins that includes GAP1_IP4BP (or RASA3), CAPRI, and RASAL. In vitro, RASA2 has been shown to bind inositol 1,3,4,5-tetrakisphosphate (IP4), the water soluble inositol head group of the lipid second messenger phosphatidylinositol 3,4,5-trisphosphate (PIP3). In vivo studies also demonstrated that RASA2 binds PIP3, and it is recruited to the plasma membrane following agonist stimulation of PI 3-kinase. Furthermore, the membrane translocation is a consequence of the ability of its pleckstrin homology (PH) domain to bind PIP3.
Probab=30.58 E-value=9.8e+02 Score=28.40 Aligned_cols=206 Identities=17% Similarity=0.237 Sum_probs=106.9
Q ss_pred hHHHHHHHHHhhhcCCchhhHHHHHHHHHHhhcCCCChhHHH--HHhhhccCCcchhhhhhHHHHHHHHHhhccCCCh--
Q 000730 1003 REAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRG--LCLRGLVQIPSIHIHQYATQVLSVILALLDDLDE-- 1078 (1326)
Q Consensus 1003 Ri~a~aflsELl~~~~~~~~l~~~~i~~L~~~l~D~~~~VR~--lsLrGLgnl~~~~v~~~~~~lL~all~~L~d~d~-- 1078 (1326)
|.-++.-+++++-+......+++.++..=.+...|++...|. ++-|.+..-.......|...+|..++.-+.+.+.
T Consensus 34 ~~~~a~~Lvrlf~~~~~~~~fl~~li~~Ev~~t~~~~tLFRgNSlaTK~m~~y~k~~G~~YL~~tL~pvI~~i~~~~~~~ 113 (313)
T cd05394 34 KYDAVLPLVRLLLHHQKLVPFVAAVAELDLKDTQEANTIFRGNSLATRCLDEMMKIVGKHYLKVTLKPVLDEICDSPKPC 113 (313)
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhcCCHhhHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCc
Confidence 554555566666655554556666666666778888888885 3334444333334466777777777776644221
Q ss_pred ----------hHH---HHHH-----HHHHHHhccCCcCCcchhHHhHHhhhcC----cCcCCChHHHHHHHHHHHHhhhc
Q 000730 1079 ----------SVQ---LTAV-----SCLLTILKSSSKDAVEPILLNLSVRLRN----LQVSMNVKMRRNAFAAFGALSNF 1136 (1326)
Q Consensus 1079 ----------~V~---leAm-----~~L~~lL~~l~~~~~~~~l~~l~~~lrp----ffede~~~vR~aAi~LfG~L~~~ 1136 (1326)
+.+ .+.+ ..+..|....+. .-..+..|+..||. -|.+. .+++..|+.-|==|==+
T Consensus 114 EvDP~Kv~~g~~le~n~~~L~~~~~~~~~~I~~S~~~--~P~~lr~i~~~lr~~v~~rFp~~-~~~~~~aVsgFlFLRF~ 190 (313)
T cd05394 114 EIDPIKLKEGDNVENNKENLRYYVDKVFFCIVKSSMS--CPTVMCDIFYSLRHMAVKRFPND-PHVQYSAVSSFVFLRFF 190 (313)
T ss_pred eeChhhcCCcchHHHHHHHHHHHHHHHHHHHHhCccc--CcHHHHHHHHHHHHHHHHHCCCh-HhhHHHHHHHHHHHHHh
Confidence 011 1111 122233333221 12234444444432 33332 44554444322111001
Q ss_pred CCCcchHHHHHHHHhhhhHHHHhccCCChhHHHHHHHHHHhhchhhhh-hhhhhhccccCCCCCCCChHHHHHHHHHHHH
Q 000730 1137 GVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEI-GVYGIFNSHCFNSDHRSDYETFVRDLTRQFV 1215 (1326)
Q Consensus 1137 ~~~~~~~~~~eQv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL~~-~l~~lf~~~~~~~~~~l~~~~f~~~i~k~L~ 1215 (1326)
+. ..+-|=+++|.++.|+ ..++++|.-+|..++. .=...|.+..-. -.-+.|+..+.+.+.
T Consensus 191 cP------------AIlSP~lf~L~~~~p~--~~~~RtLtLIaKvLQnLAN~~~~~~~~~~----~~KE~~M~~~~~~~~ 252 (313)
T cd05394 191 AV------------AVVSPHTFHLRPHHPD--AQTSRTLTLISKTIQTLGSWGSLTKSKPS----SFKETFMCEFFKMFQ 252 (313)
T ss_pred hh------------hhcCcccccccCCCCC--hhhhHHHHHHHHHHHHHhCccccccCCcc----ccchHHHHHHhHHHH
Confidence 11 2345667888888776 3678899999887776 323333321000 112677777777766
Q ss_pred Hh-CcchHHHHHHHH
Q 000730 1216 QH-FPSRIDSYMGST 1229 (1326)
Q Consensus 1216 ~~-~~~~~~~~l~~~ 1229 (1326)
++ +.+.+..|+.+.
T Consensus 253 ~~~~~~~v~~FLd~I 267 (313)
T cd05394 253 EETYTKVVKKFLDEI 267 (313)
T ss_pred HHHHHHHHHHHHHHH
Confidence 64 346777777774
No 226
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.89 E-value=1.5e+03 Score=30.26 Aligned_cols=76 Identities=9% Similarity=0.072 Sum_probs=59.2
Q ss_pred hhhHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccCchhHHHHHHhhhcccchhhhhccccCCCCchhHHHHhhcCcccH
Q 000730 759 VSRTTQSLLSAAVHITDKHLRLETLGAISCLAENTNSKIVFNEVLATAGKDIVTKDISRLRGGWPMQDAFHAFSQHAVLS 838 (1326)
Q Consensus 759 V~~I~~~I~~~l~~i~~~~~r~~~l~ai~~La~~h~~~vV~~~Ll~~~~~~~~~~~~~~L~~~lP~d~~W~aLa~d~~l~ 838 (1326)
++|.++.++.+..+.|-..-|+.+.+++-.+++.+..+|.-.-| =|+-..-+.=..|+...
T Consensus 20 ~aETI~kLcDRvessTL~eDRR~A~rgLKa~srkYR~~Vga~Gm-------------------k~li~vL~~D~~D~E~i 80 (970)
T KOG0946|consen 20 AAETIEKLCDRVESSTLLEDRRDAVRGLKAFSRKYREEVGAQGM-------------------KPLIQVLQRDYMDPEII 80 (970)
T ss_pred HHhHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHccc-------------------HHHHHHHhhccCCHHHH
Confidence 88899999999999999999999999999999999887662211 12222333335688889
Q ss_pred HHHHHHHHHHHccCC
Q 000730 839 FLFLEHLISALNQTP 853 (1326)
Q Consensus 839 ~~vL~~LL~~L~~~p 853 (1326)
.-+|+.++-+....-
T Consensus 81 k~~LdTl~il~~~dd 95 (970)
T KOG0946|consen 81 KYALDTLLILTSHDD 95 (970)
T ss_pred HHHHHHHHHHHhcCc
Confidence 999999998887763
No 227
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=29.87 E-value=8.3e+02 Score=28.94 Aligned_cols=86 Identities=17% Similarity=0.159 Sum_probs=51.1
Q ss_pred HHHHhhhccCCcchhhhhhHHHHHHHHHhhccC-CChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCcCCChH
Q 000730 1043 RGLCLRGLVQIPSIHIHQYATQVLSVILALLDD-LDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVK 1121 (1326)
Q Consensus 1043 R~lsLrGLgnl~~~~v~~~~~~lL~all~~L~d-~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~l~~~lrpffede~~~ 1121 (1326)
|.+..+.|..++... ..+.++..+...+.. .+|.....++.+|..=+..++ ..+.. .+...+..-|.|.++.
T Consensus 4 r~~~~~~L~~l~~~~---~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~-~~~~~---~~~~~~~kGl~~kk~~ 76 (339)
T PF12074_consen 4 RVLHASMLSSLPSSS---LSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFLS-SELPK---KVVDAFKKGLKDKKPP 76 (339)
T ss_pred HHHHHHHHHhCCCcc---hHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhC-cCCCH---HHHHHHHHHhcCCCCc
Confidence 344444444444311 345556666665554 456666777777777776662 22222 2333344567777777
Q ss_pred HHHHHHHHHHHhhh
Q 000730 1122 MRRNAFAAFGALSN 1135 (1326)
Q Consensus 1122 vR~aAi~LfG~L~~ 1135 (1326)
+|..=+..+|+...
T Consensus 77 vR~~w~~~~~~~~~ 90 (339)
T PF12074_consen 77 VRRAWLLCLGEALW 90 (339)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999999876
No 228
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=29.79 E-value=4.3e+02 Score=30.47 Aligned_cols=71 Identities=8% Similarity=0.013 Sum_probs=47.0
Q ss_pred HHHHHHHHhhhhccccccchHHHHHHHHHhhhcCCc-hhhHHHHHHHHHHhhc-CCCChhHHHHHhhhccCCc
Q 000730 984 VQTICLILTKSINRQQRFQREAAAAALSEFVRYSGG-FDSLLEQMVEALCRHV-SDESPTVRGLCLRGLVQIP 1054 (1326)
Q Consensus 984 ~~~i~~~L~~~L~s~~~~~Ri~a~aflsELl~~~~~-~~~l~~~~i~~L~~~l-~D~~~~VR~lsLrGLgnl~ 1054 (1326)
.|+++=...-.|++.+|..-+.|.-.+.+++..... .....+.+....-..- ..+-+-++.+.++||-+-.
T Consensus 5 ~pQlFW~~vAcL~S~~E~EF~~aL~lL~~~l~k~dl~~~~~~~~L~~~~p~~we~~~f~Glq~Ll~KGL~Ss~ 77 (262)
T PF14225_consen 5 FPQLFWTAVACLESIHEHEFLEALSLLNKLLDKLDLDDPDVRDVLESSQPQLWEWGNFEGLQPLLLKGLRSSS 77 (262)
T ss_pred hhHHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHhCCccccCCCchhHHHHHhCccCCCC
Confidence 567777777888899999999999999999887533 2222222222222211 2466789999999987543
No 229
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=29.71 E-value=3.6e+02 Score=28.18 Aligned_cols=88 Identities=9% Similarity=0.092 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHhCcchHHHHHHHHHHhhcCCChhHHHHHHHHHhhhhccCchhhhhhccHHHHHHHHHHHhccC-CChhH
Q 000730 1206 FVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQS-ADAIV 1284 (1326)
Q Consensus 1206 f~~~i~k~L~~~~~~~~~~~l~~~l~y~kS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~D-pdp~V 1284 (1326)
..-++|-.+-.. ++....-+.....-++++.+++..-|..++..++++.+.....++......+.|.. +..+ .++.|
T Consensus 20 ~il~icD~I~~~-~~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~k-l~~~~~~~~V 97 (144)
T cd03568 20 LILDVCDKVKSD-ENGAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKK-LINDRVHPTV 97 (144)
T ss_pred HHHHHHHHHhcC-CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHH-HhcccCCHHH
Confidence 334777766655 66666667776778889999999999999999999999777777877888889999 7777 88999
Q ss_pred HHHHHHHHHHH
Q 000730 1285 RATCSSSLGWL 1295 (1326)
Q Consensus 1285 R~~Aa~aL~~l 1295 (1326)
+.++.+-+...
T Consensus 98 k~kil~li~~W 108 (144)
T cd03568 98 KEKLREVVKQW 108 (144)
T ss_pred HHHHHHHHHHH
Confidence 99887765543
No 230
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=29.62 E-value=1.3e+03 Score=29.55 Aligned_cols=392 Identities=13% Similarity=0.138 Sum_probs=212.2
Q ss_pred HHHHHHHHHHhccCCChhhHHHHHHHHHHHHhhhcccccccchhhHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhc----
Q 000730 717 LVATLHSCTTAICDRTKQSAEGAIQAVVEFVTKRGNELSETDVSRTTQSLLSAAVHITDKHLRLETLGAISCLAEN---- 792 (1326)
Q Consensus 717 l~~ll~~ll~~L~d~~~~~~~~A~~~L~~~l~~rg~~L~e~~V~~I~~~I~~~l~~i~~~~~r~~~l~ai~~La~~---- 792 (1326)
+..|+.+ .+.+++-....+|...+-.++..+-....-+-|+..+.+|...|. -..-.++..+-.++..+|.|
T Consensus 367 Vl~FvEq---ni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~-D~~l~vk~ttAwc~g~iad~va~~ 442 (858)
T COG5215 367 VLGFVEQ---NIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMS-DSCLWVKSTTAWCFGAIADHVAMI 442 (858)
T ss_pred HHHHHHH---hccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcc-cceeehhhHHHHHHHHHHHHHHHh
Confidence 3444443 456666667788887777777654432212227777777777665 44455777777778777765
Q ss_pred -----cCchhHHHHHHhhhcccchhhhhccccCCCCch-hHHHHhhc-------C---cccHHHHHHHHHHHHccCCCcc
Q 000730 793 -----TNSKIVFNEVLATAGKDIVTKDISRLRGGWPMQ-DAFHAFSQ-------H---AVLSFLFLEHLISALNQTPFVK 856 (1326)
Q Consensus 793 -----h~~~vV~~~Ll~~~~~~~~~~~~~~L~~~lP~d-~~W~aLa~-------d---~~l~~~vL~~LL~~L~~~p~~~ 856 (1326)
|...+| +..+ -| + .+.|.-.- ..|+...- . ++...++...++.-|-+.--..
T Consensus 443 i~p~~Hl~~~v-sa~l--iG-------l--~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~ 510 (858)
T COG5215 443 ISPCGHLVLEV-SASL--IG-------L--MDCPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELA 510 (858)
T ss_pred cCccccccHHH-HHHH--hh-------h--hccchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhh
Confidence 444444 3332 00 0 01111111 16876532 1 2222222222222222111000
Q ss_pred CCCccCCCCCCCCCCCccchHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHHHHHhhhcccCCCC-----C--CCCh
Q 000730 857 GDMEKGDYSSHSADTWIDDDILQAAILALTAFFRGGGKVGKKAVEKSYAPVLAALTLQLGSCHGLASS-----G--QHEP 929 (1326)
Q Consensus 857 e~~~~~~~~~~~~~~~~~~~~~laA~~aL~Ell~~~~~~~~~av~~~fp~Lf~aLL~ql~~~~~~~~~-----~--~~~P 929 (1326)
+ + . .-.-.++..||+++..- +-++|....+.+..-.+.++..|+.+... + .+.-
T Consensus 511 ~-----N----e------~n~R~s~fsaLgtli~~----~~d~V~~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~e 571 (858)
T COG5215 511 L-----N----E------SNLRVSLFSALGTLILI----CPDAVSDILAGFYDYTSKKLDECISVLGQILATEDQLLVEE 571 (858)
T ss_pred c-----c----c------hhHHHHHHHHHHHHHhh----cchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHH
Confidence 0 0 0 01234678888888764 34778888888877788888877765321 0 0111
Q ss_pred -HHHHHHHHHHHHHhhcc--hHHH--------HHHHhcCCCCChhhHHHHHHHHHHHHhhcCchhHHHHHHHHhhhhccc
Q 000730 930 -LRAILTSFQAFCECVGD--LEMR--------KILARDGEQNDKEKWINLIGDVAGCVSIKRPKEVQTICLILTKSINRQ 998 (1326)
Q Consensus 930 -~~~aleAlk~ll~~~g~--~~~~--------~~L~~~g~W~~~e~~~~gV~lLAr~m~~~~~~~~~~i~~~L~~~L~s~ 998 (1326)
.|-.+..+-+...+.+. +.+. ..|+....-.-.+..+.+|+.++.++-+.-..+.+.+.-++.+.|+-.
T Consensus 572 lqSN~~~vl~aiir~~~~~ie~v~D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~aln~~ 651 (858)
T COG5215 572 LQSNYIGVLEAIIRTRRRDIEDVEDQLMELFIRILESTKPTTAFGDVYTAISALSTSLEERFEQYASKFIPYLTRALNCT 651 (858)
T ss_pred HHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcch
Confidence 12223333333444444 2222 223322111134555666777777776666678888888888888777
Q ss_pred cccchHHHHHHHHHhhhcCCc-hhhHHHHHHHHHHhhcCCCC--hhHHHHHhhhccCCcchhhhhhHHHHHHHHHhhccC
Q 000730 999 QRFQREAAAAALSEFVRYSGG-FDSLLEQMVEALCRHVSDES--PTVRGLCLRGLVQIPSIHIHQYATQVLSVILALLDD 1075 (1326)
Q Consensus 999 ~~~~Ri~a~aflsELl~~~~~-~~~l~~~~i~~L~~~l~D~~--~~VR~lsLrGLgnl~~~~v~~~~~~lL~all~~L~d 1075 (1326)
+...-.+|+.|...+-|.-+. -...-+.+++.|.+-++.|+ -.++-..|--.|.|+..-...+ ..-|+.++..+..
T Consensus 652 d~~v~~~avglvgdlantl~~df~~y~d~~ms~LvQ~lss~~~~R~lKPaiLSvFgDIAlaiga~F-~~YL~~im~L~qq 730 (858)
T COG5215 652 DRFVLNSAVGLVGDLANTLGTDFNIYADVLMSSLVQCLSSEATHRDLKPAILSVFGDIALAIGANF-ESYLDMIMMLFQQ 730 (858)
T ss_pred hHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcChhhccccchHHHHHHHHHHHHHhhhH-HHHHHHHHHHHHH
Confidence 777788999999999887543 34445778999999888763 3445556666777765422222 2224555544433
Q ss_pred ------CCh---------h---HHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCcCCC--hHHHHHHHHHHHHhhh
Q 000730 1076 ------LDE---------S---VQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMN--VKMRRNAFAAFGALSN 1135 (1326)
Q Consensus 1076 ------~d~---------~---V~leAm~~L~~lL~~l~~~~~~~~l~~l~~~lrpffede~--~~vR~aAi~LfG~L~~ 1135 (1326)
.++ . .+.+|.-|++.-++. ..+.+-|...+|...|---=+|.+ ...-.+|..|.|+|+.
T Consensus 731 as~~~p~~~~~~~~dy~~~~~~~v~~ayVgI~~~~~n-r~~~v~Pyv~sif~~i~~iaeDp~~se~~traalGLigDla~ 809 (858)
T COG5215 731 ASELDPHSDEVYVDDYRKNAVQLVNCAYVGIGDSSKN-RVRSVLPYVISIFHKIGMIAEDPNGSEAHTRAALGLIGDLAG 809 (858)
T ss_pred HhccCCCCCceeHHHHHHHHHHHHHHHHHHhhhhhhh-hHHHhhhHHHHHHHHHHHhhcCCccchhHHHHHHHHHHHHHH
Confidence 111 1 345555555554441 122344555666665543334433 2333589999999997
Q ss_pred -cCCCcchHHH
Q 000730 1136 -FGVGSQREAF 1145 (1326)
Q Consensus 1136 -~~~~~~~~~~ 1145 (1326)
|.+|..|..|
T Consensus 810 mfpkgelk~~~ 820 (858)
T COG5215 810 MFPKGELKFGL 820 (858)
T ss_pred hCCCcchhhcc
Confidence 6666555443
No 231
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=29.10 E-value=70 Score=24.68 Aligned_cols=28 Identities=29% Similarity=0.145 Sum_probs=23.4
Q ss_pred HHHHHHHHhccCCChhHHHHHHHHHHHHH
Q 000730 1268 VFGLLVVKLSQSADAIVRATCSSSLGWLL 1296 (1326)
Q Consensus 1268 l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~ 1296 (1326)
.+..|.. |++++++.|+..|..||+.+.
T Consensus 13 ~i~~L~~-ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 13 GLPALVE-LLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CHHHHHH-HHcCCCHHHHHHHHHHHHHHc
Confidence 4666888 677899999999999998874
No 232
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=28.93 E-value=5.5e+02 Score=27.89 Aligned_cols=65 Identities=25% Similarity=0.176 Sum_probs=51.2
Q ss_pred HHHHHHhhcCCCChhHHHHHhhhccCCcchhhhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhcc
Q 000730 1027 MVEALCRHVSDESPTVRGLCLRGLVQIPSIHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKS 1094 (1326)
Q Consensus 1027 ~i~~L~~~l~D~~~~VR~lsLrGLgnl~~~~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~ 1094 (1326)
+...+.+|.+++|+-+|+.++-++-..... .+.+.++..+...+.|.+.-|.+..-..|+.+...
T Consensus 121 ~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~---~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~ 185 (213)
T PF08713_consen 121 ALELLEKWAKSDNEWVRRAAIVMLLRYIRK---EDFDELLEIIEALLKDEEYYVQKAIGWALREIGKK 185 (213)
T ss_dssp HHHHHHHHHHCSSHHHHHHHHHCTTTHGGG---CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHh
Confidence 567889999999999999999888654433 55678888888888887777888877888877654
No 233
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=28.92 E-value=2e+02 Score=35.07 Aligned_cols=83 Identities=19% Similarity=0.189 Sum_probs=48.9
Q ss_pred CCC----ChhhHHHHHHHHHHHHhhcCchhHHHHHHHHhhhhccccccchHHHHH-HHHHhhhcCCchhhHHHH--HHHH
Q 000730 958 EQN----DKEKWINLIGDVAGCVSIKRPKEVQTICLILTKSINRQQRFQREAAAA-ALSEFVRYSGGFDSLLEQ--MVEA 1030 (1326)
Q Consensus 958 ~W~----~~e~~~~gV~lLAr~m~~~~~~~~~~i~~~L~~~L~s~~~~~Ri~a~a-flsELl~~~~~~~~l~~~--~i~~ 1030 (1326)
.|. ++..|.+-+..+-. -.-+|+..|+.+|++.+++.-+..++ =++|++++.+....+++. .-..
T Consensus 342 ~WSP~Hk~e~FW~eNa~rlne--------nnyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~ 413 (442)
T KOG2759|consen 342 EWSPVHKSEKFWRENADRLNE--------NNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKER 413 (442)
T ss_pred CCCccccccchHHHhHHHHhh--------ccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHH
Confidence 687 67777777754332 35678888899999988777654444 478999864332222222 1223
Q ss_pred HHhhcCCCChhHHHHHhh
Q 000730 1031 LCRHVSDESPTVRGLCLR 1048 (1326)
Q Consensus 1031 L~~~l~D~~~~VR~lsLr 1048 (1326)
+++-++++||.||-=||.
T Consensus 414 vM~Llnh~d~~Vry~ALl 431 (442)
T KOG2759|consen 414 VMNLLNHEDPEVRYHALL 431 (442)
T ss_pred HHHHhcCCCchHHHHHHH
Confidence 333345555555544443
No 234
>PF05536 Neurochondrin: Neurochondrin
Probab=28.18 E-value=1.4e+03 Score=29.35 Aligned_cols=140 Identities=15% Similarity=0.150 Sum_probs=84.3
Q ss_pred HHHHHHhhhhccccccchHHHHHHHHHhhhcCCc----hhhHHHH----HHHHHHhhcCC----CChhHHHHHhhhccCC
Q 000730 986 TICLILTKSINRQQRFQREAAAAALSEFVRYSGG----FDSLLEQ----MVEALCRHVSD----ESPTVRGLCLRGLVQI 1053 (1326)
Q Consensus 986 ~i~~~L~~~L~s~~~~~Ri~a~aflsELl~~~~~----~~~l~~~----~i~~L~~~l~D----~~~~VR~lsLrGLgnl 1053 (1326)
+.+......|++..+.+|.+|.+.++.+++.... .+.+.+. -+++|.+.-.. +....+.+++-=|+..
T Consensus 5 ~~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f 84 (543)
T PF05536_consen 5 ASLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAF 84 (543)
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 4455667788899999999999999999986432 1123333 33444443222 3456667766655533
Q ss_pred ------cch-hhhhhHHHHHHHHHhhccCCCh-hHHHHHHHHHHHHhccCCcCCcchh-----HHhHHhhhcCcCcCCCh
Q 000730 1054 ------PSI-HIHQYATQVLSVILALLDDLDE-SVQLTAVSCLLTILKSSSKDAVEPI-----LLNLSVRLRNLQVSMNV 1120 (1326)
Q Consensus 1054 ------~~~-~v~~~~~~lL~all~~L~d~d~-~V~leAm~~L~~lL~~l~~~~~~~~-----l~~l~~~lrpffede~~ 1120 (1326)
+.+ ++-.. +|.+++.+...++ .++-+++.+|..|...- ++...+ +..++..+.. ++
T Consensus 85 ~~~~~~a~~~~~~~~----IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~--~G~~aLl~~g~v~~L~ei~~~-----~~ 153 (543)
T PF05536_consen 85 CRDPELASSPQMVSR----IPLLLEILSSSSDLETVDDALQCLLAIASSP--EGAKALLESGAVPALCEIIPN-----QS 153 (543)
T ss_pred cCChhhhcCHHHHHH----HHHHHHHHHcCCchhHHHHHHHHHHHHHcCc--HhHHHHHhcCCHHHHHHHHHh-----Cc
Confidence 222 33333 4555555555466 89999999999998432 221111 1122222222 66
Q ss_pred HHHHHHHHHHHHhhhc
Q 000730 1121 KMRRNAFAAFGALSNF 1136 (1326)
Q Consensus 1121 ~vR~aAi~LfG~L~~~ 1136 (1326)
.....|+.++..+...
T Consensus 154 ~~~E~Al~lL~~Lls~ 169 (543)
T PF05536_consen 154 FQMEIALNLLLNLLSR 169 (543)
T ss_pred chHHHHHHHHHHHHHh
Confidence 7788899998888773
No 235
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=27.26 E-value=5.7e+02 Score=26.67 Aligned_cols=88 Identities=10% Similarity=0.067 Sum_probs=52.8
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHhhhcccccccchh--hHHHHHHHHHhhcCcHHHHH
Q 000730 703 RIVSSVCILLTKDELVATLHSCTTAICDRTKQSAEGAIQAVVEFVTKRGNELSETDVS--RTTQSLLSAAVHITDKHLRL 780 (1326)
Q Consensus 703 ~i~~~i~~~L~~~el~~ll~~ll~~L~d~~~~~~~~A~~~L~~~l~~rg~~L~e~~V~--~I~~~I~~~l~~i~~~~~r~ 780 (1326)
.||..|... ...=.+-+..+...|..++++...-|-.+|.++++..|..+..+ |+ +.++.+..-+..-+.+.+++
T Consensus 23 ~icD~I~~~--~~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~e-vask~Fl~eL~kl~~~~~~~~Vk~ 99 (144)
T cd03568 23 DVCDKVKSD--ENGAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQE-VASRDFTQELKKLINDRVHPTVKE 99 (144)
T ss_pred HHHHHHhcC--CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHH-HhhHHHHHHHHHHhcccCCHHHHH
Confidence 555555433 33334566677777888888899999999999999999988422 43 11222222111114555666
Q ss_pred HHHHHHHHHhhcc
Q 000730 781 ETLGAISCLAENT 793 (1326)
Q Consensus 781 ~~l~ai~~La~~h 793 (1326)
.++..|...+...
T Consensus 100 kil~li~~W~~~f 112 (144)
T cd03568 100 KLREVVKQWADEF 112 (144)
T ss_pred HHHHHHHHHHHHh
Confidence 6665555555443
No 236
>PF14750 INTS2: Integrator complex subunit 2
Probab=25.94 E-value=2e+03 Score=30.42 Aligned_cols=120 Identities=14% Similarity=0.059 Sum_probs=70.5
Q ss_pred ChHHHHHH-HHHHHHhhhcCCCcchHHHHHHHHhhhhHHHHhccCCChhHHHHHHHHHHhh----------------chh
Q 000730 1119 NVKMRRNA-FAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQV----------------APF 1181 (1326)
Q Consensus 1119 ~~~vR~aA-i~LfG~L~~~~~~~~~~~~~eQv~~~LvpLLlHL~D~~~~V~~ack~tL~~~----------------a~l 1181 (1326)
..-++++| +++|..|-..++-+. ..+=...+..|+-+--++.|.-.+=-..+|+.. ...
T Consensus 325 ~~~~~~~allrlyCaL~g~~g~k~----~~eE~~~lL~lit~~p~~~~~g~rf~~l~l~~Llacp~l~~~~~~e~~~v~W 400 (1049)
T PF14750_consen 325 EHIVQASALLRLYCALRGIAGLKF----TPEESEALLQLITSSPPPTPAGIRFVSLALCMLLACPSLISTPEQENSVVRW 400 (1049)
T ss_pred chHHHHHHHHHHHHHHHhhhcCCc----CHHHHHHHHHHHccCCCCCccchhHHHHHHHHHHHhHHhccCccHHHHHHHH
Confidence 33354444 588888877554332 222234455555555444444332222222221 122
Q ss_pred hhhh--hhhhhccccCCCCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHHhhcCCChhHHHHHHHHHh
Q 000730 1182 MEIG--VYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSS 1249 (1326)
Q Consensus 1182 L~~~--l~~lf~~~~~~~~~~l~~~~f~~~i~k~L~~~~~~~~~~~l~~~l~y~kS~~~~IR~aA~~fiG 1249 (1326)
++|- -.+.|... .+...+|++++-=++-+|..+-.+.+..++..++++ | ..||.+....++
T Consensus 401 l~~Lik~~a~~~~~---~~~~~s~~E~LLLiaI~fhs~Q~~~I~~Lv~~tLgm-k---i~i~~~sl~rlk 463 (1049)
T PF14750_consen 401 LQWLIKEEAYFESG---SGVSASFGEMLLLIAIHFHSNQLSAIAELVCSTLGM-K---IPIRPNSLSRLK 463 (1049)
T ss_pred HHHHHHhhhhhccc---ccCCccHHHHHHHHHHHHHhccHHHHHHHHHhhcCC-e---eeechHHHHHHH
Confidence 3441 13344442 235668999999999999999999999999999984 3 346766665555
No 237
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=25.64 E-value=9.9e+02 Score=26.85 Aligned_cols=193 Identities=14% Similarity=0.088 Sum_probs=109.7
Q ss_pred ChhhHHHHHHHHHHHHhhcCchhHHHHHHHHhhhhccccccchHHHHHHHHHhhhcCCchhhHHHHHHHHHHh----hcC
Q 000730 961 DKEKWINLIGDVAGCVSIKRPKEVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCR----HVS 1036 (1326)
Q Consensus 961 ~~e~~~~gV~lLAr~m~~~~~~~~~~i~~~L~~~L~s~~~~~Ri~a~aflsELl~~~~~~~~l~~~~i~~L~~----~l~ 1036 (1326)
+++....-+..|+.-.+..+ ...+.+++.+.+..+.+...-+-++.-.++++.+.....-..++.++..+.. ...
T Consensus 14 ~~~~~~~~L~~L~~l~~~~~-~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f~~L~~~L~~~~~r~~~~~~ 92 (234)
T PF12530_consen 14 DPELQLPLLEALPSLACHKN-VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHFPFLQPLLLLLILRIPSSFS 92 (234)
T ss_pred ChHHHHHHHHHHHHHhccCc-cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHhhcccccC
Confidence 44555556666666555544 6788888888888777766667788888888877643321223333322111 122
Q ss_pred CCChhHHH-----HHhhhccCCcchhhhhhHHHHHHHHHhhc-cCCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhh
Q 000730 1037 DESPTVRG-----LCLRGLVQIPSIHIHQYATQVLSVILALL-DDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVR 1110 (1326)
Q Consensus 1037 D~~~~VR~-----lsLrGLgnl~~~~v~~~~~~lL~all~~L-~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~l~~~ 1110 (1326)
+.+...+. .+++-+-..-+ + +...+++.+...| ++.++.+..-|+.+|+-+.+. +--++.+...-+..+
T Consensus 93 ~~~~~~~~~i~~a~s~~~ic~~~p---~-~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~-~vvd~~s~w~vl~~~ 167 (234)
T PF12530_consen 93 SKDEFWECLISIAASIRDICCSRP---D-HGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEA-EVVDFYSAWKVLQKK 167 (234)
T ss_pred CCcchHHHHHHHHHHHHHHHHhCh---h-hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH-hhccHHHHHHHHHHh
Confidence 22222221 12221111111 1 6677888888888 777888999999999988843 222333444344333
Q ss_pred hcCcCcCCChHHHHHHHHHHHHhhhcC-CCcchHHHHHHHHhhhhHHHHhccC
Q 000730 1111 LRNLQVSMNVKMRRNAFAAFGALSNFG-VGSQREAFLEQIHAMLPRLILHIYD 1162 (1326)
Q Consensus 1111 lrpffede~~~vR~aAi~LfG~L~~~~-~~~~~~~~~eQv~~~LvpLLlHL~D 1162 (1326)
+ =.+.++.|=.+--++|+-+.... +....+.+..+++..+=-..-|.++
T Consensus 168 l---~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~~~ 217 (234)
T PF12530_consen 168 L---SLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSSDV 217 (234)
T ss_pred c---CCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhcccccc
Confidence 3 23445555555556777665532 3344566777777777666666554
No 238
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=25.60 E-value=5.9e+02 Score=34.37 Aligned_cols=159 Identities=16% Similarity=0.178 Sum_probs=97.4
Q ss_pred CCChHHHHHHHHHHHHhhhcCCCcchHHHHHHHHhhhhHHHHhccCCChhHHHHHHHHHHhhc-hhhhhhhhhhhccccC
Q 000730 1117 SMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVA-PFMEIGVYGIFNSHCF 1195 (1326)
Q Consensus 1117 de~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a-~lL~~~l~~lf~~~~~ 1195 (1326)
|+.+.||..|...|.++.....+...+. |+. .++---.|+--.|+++.-.++-+-. ++-.- -++-.|
T Consensus 483 DkaaavR~~al~s~tk~l~l~~~~~~~s----Il~---~~inS~~d~~fs~ves~~~~~~~~~~~~s~~-----~~tt~~ 550 (1529)
T KOG0413|consen 483 DKAAAVRLHALNSLTKILQLQSHREAFS----ILC---ATINSEMDEKFSAVESLEDLNVSGKAPSSKT-----KKTTDL 550 (1529)
T ss_pred hhhHHHHHHHHHHHHHHHHHhcccchHH----HHH---HhcCCccccchhHHHhchhhhhcccCccccc-----ccchhh
Confidence 6678999999999999998655443322 222 2222334666677776655554321 11111 000011
Q ss_pred CCCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHH-hhc-CCChhHHHHHHHHHhhhhccCchhhhhhccHHHHHHHHH
Q 000730 1196 NSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQ-AFE-APWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLV 1273 (1326)
Q Consensus 1196 ~~~~~l~~~~f~~~i~k~L~~~~~~~~~~~l~~~l~-y~k-S~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~l~~~L~ 1273 (1326)
- .+-++..-++---++.+.-.++...+..-+- ... +.-.++|.+|...+-....+-+..-. .|.+.--|+
T Consensus 551 l----~~~~~ii~d~~~~~~~~ge~~~e~~V~~mi~Rr~~~d~k~~v~k~a~~~l~S~l~~cD~~~~----fe~~L~iLq 622 (1529)
T KOG0413|consen 551 L----LDEQQIIQDFKLKLMNKGETRVEKDVVYMIVRRLSTDDKAPVKKAACSLLKSYLSYCDEASK----FEVVLSILQ 622 (1529)
T ss_pred c----CcchhhhhhcchhhhhccccHHHHHHHHHHHHHhccCCCcccchhhHHHHHHHHhccchhhc----chhHHHHHH
Confidence 1 1123444455555666666666666555444 444 55677999998877766666653332 255677788
Q ss_pred HHhccCCChhHHHHHHHHHHHHH
Q 000730 1274 VKLSQSADAIVRATCSSSLGWLL 1296 (1326)
Q Consensus 1274 ~~Ll~Dpdp~VR~~Aa~aL~~l~ 1296 (1326)
+ |=+||-..||..++++|+.+.
T Consensus 623 ~-lCrd~~vsvrk~~~~Sltel~ 644 (1529)
T KOG0413|consen 623 M-LCRDRMVSVRKTGADSLTELM 644 (1529)
T ss_pred H-HhcCcchHHHHHHHHHHHHHH
Confidence 8 889999999999999999876
No 239
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=25.56 E-value=1.2e+03 Score=27.90 Aligned_cols=199 Identities=15% Similarity=0.144 Sum_probs=103.5
Q ss_pred CCCChhhHHHHHHHHHHHHhhcCchhHHHHHHHHhhhhccccccchHHHHHHHHHhhhcCCchhh------HH---HHHH
Q 000730 958 EQNDKEKWINLIGDVAGCVSIKRPKEVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDS------LL---EQMV 1028 (1326)
Q Consensus 958 ~W~~~e~~~~gV~lLAr~m~~~~~~~~~~i~~~L~~~L~s~~~~~Ri~a~aflsELl~~~~~~~~------l~---~~~i 1028 (1326)
|+.+.+.-.+.|..||..+... .++..|+..|..-+=.-|--++.+|+-+++...+... +. ..++
T Consensus 54 G~~e~ep~~e~v~qLa~Ei~~~------dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil 127 (335)
T PF08569_consen 54 GDGEPEPNPEQVAQLAQEIYRS------DLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEIL 127 (335)
T ss_dssp S-SS----HHHHHHHHHHHHHH------THHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHh------CHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHH
Confidence 4444444455577888877543 3444455555554444555666677777775433222 11 1245
Q ss_pred HHHHhhcCCCChhHHHHHhhhccCCcch--hhhhhHHHH-----HHHHHhhccCCChhHHHHHHHHHHHHhccCCcCCcc
Q 000730 1029 EALCRHVSDESPTVRGLCLRGLVQIPSI--HIHQYATQV-----LSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVE 1101 (1326)
Q Consensus 1029 ~~L~~~l~D~~~~VR~lsLrGLgnl~~~--~v~~~~~~l-----L~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~ 1101 (1326)
..|..+-.+|+-..= -|.|... +.......+ +.-+..-.+..+=+|.-+|+.++..++..= ..-++
T Consensus 128 ~~L~~gy~~~dial~------~g~mlRec~k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~h-k~~~a 200 (335)
T PF08569_consen 128 DILLRGYENPDIALN------CGDMLRECIKHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRH-KKLVA 200 (335)
T ss_dssp HHHHHGGGSTTTHHH------HHHHHHHHTTSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSS-HHHHH
T ss_pred HHHHHHhcCccccch------HHHHHHHHHhhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhcc-HHHHH
Confidence 555555555443211 0111111 111111111 112233333345579999999999999752 12222
Q ss_pred hhHH----hHHhhhcCcCcCCChHHHHHHHHHHHHhhhcCCCcchHHHHHHHH--hhhhHHHHhccCCChhHHHHH
Q 000730 1102 PILL----NLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIH--AMLPRLILHIYDDDLSVRQAC 1171 (1326)
Q Consensus 1102 ~~l~----~l~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~--~~LvpLLlHL~D~~~~V~~ac 1171 (1326)
.++. ......-.+.+.+|.-.|.-|+.|+|++.- .......|..=|- .+|--++.+|+|+...|.-.+
T Consensus 201 ~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkLL~elll--dr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eA 274 (335)
T PF08569_consen 201 EFLSNNYDRFFQKYNKLLESSNYVTKRQSLKLLGELLL--DRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEA 274 (335)
T ss_dssp HHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHHHHHHHH--SGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccCCCeEeehhhHHHHHHHHH--chhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHH
Confidence 3322 222344567788999999999999999995 2233333332222 577888899999999887766
No 240
>PRK09169 hypothetical protein; Validated
Probab=25.28 E-value=2.6e+03 Score=31.66 Aligned_cols=239 Identities=17% Similarity=0.123 Sum_probs=137.2
Q ss_pred CChHHHHHHHHH-------HHHHhhcchHHHHHHHhcCCCCChhhHHHHHHHHHHHHhhc-------CchhHHHHHHHHh
Q 000730 927 HEPLRAILTSFQ-------AFCECVGDLEMRKILARDGEQNDKEKWINLIGDVAGCVSIK-------RPKEVQTICLILT 992 (1326)
Q Consensus 927 ~~P~~~aleAlk-------~ll~~~g~~~~~~~L~~~g~W~~~e~~~~gV~lLAr~m~~~-------~~~~~~~i~~~L~ 992 (1326)
...|+.+.+++- .++....-+++.+.+.--..|-+....-.....||..++.. +++.+.++++-|.
T Consensus 514 ~~~c~~aA~aLA~rla~~~~l~~afnpQ~lAN~LnALSKWP~~~~cr~AA~aLA~~la~~~~l~~~~naQ~LAN~LnALS 593 (2316)
T PRK09169 514 SDACRAAAEALADRLAQDPALLQAMDAQGLANTLNALSKWPEEPDCRAAAEALAARLARRPDLRSALNAQGLANLLNALS 593 (2316)
T ss_pred cHHHHHHHHHHHHHHhcChhhhhhcCHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHhcChhhhhccCHHHHHHHHHHHh
Confidence 345667777662 34555666677777766667875444555666677765443 5667888888888
Q ss_pred hhhccccccchHHHHHHHHHhhhcCCch----hhHHHHHHHHHHhhcCCCChhHHHHHhhhccC-Ccch--hhhhhHHHH
Q 000730 993 KSINRQQRFQREAAAAALSEFVRYSGGF----DSLLEQMVEALCRHVSDESPTVRGLCLRGLVQ-IPSI--HIHQYATQV 1065 (1326)
Q Consensus 993 ~~L~s~~~~~Ri~a~aflsELl~~~~~~----~~l~~~~i~~L~~~l~D~~~~VR~lsLrGLgn-l~~~--~v~~~~~~l 1065 (1326)
+.-. ....|-++.+....+...+... .--+-++++.|.+|=. ......+...|.. ++.+ ....+.++-
T Consensus 594 KWP~--~~acr~Aa~aLA~rla~~~~~~~afn~Q~lAN~LnALSKWP~---~~~cr~Aa~aLA~~L~~~~~l~~af~aQ~ 668 (2316)
T PRK09169 594 KWPD--EDACRAAAEALAGRLARDAGLLDAFNAQDLANLLNGLSKWPD---EDDCRQAAEALAARLLRDAGLPRAFDAQG 668 (2316)
T ss_pred hCCC--chhHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHhcCCC---chhHHHHHHHHHHHHhhcchhHHhcCcHH
Confidence 8733 3455667777777777765331 1112346677777742 2222233333331 1111 122233333
Q ss_pred HHHHHhhccC-CChhHHHHHHHHHHHH-------hccCCcCCcchhHHhHHhhhcCcCcCCChHHHHHHHHHHHHhhhcC
Q 000730 1066 LSVILALLDD-LDESVQLTAVSCLLTI-------LKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFG 1137 (1326)
Q Consensus 1066 L~all~~L~d-~d~~V~leAm~~L~~l-------L~~l~~~~~~~~l~~l~~~lrpffede~~~vR~aAi~LfG~L~~~~ 1137 (1326)
|.-++.+|.. .+++.-.+|...|..- .+.++.+++...+-.+ --+.+. +.=|.++-.+.|.|..
T Consensus 669 LaN~LnALSKWp~~~~c~~Aa~aLA~rl~~~~~~~~~f~aq~lAn~LnAl----sKwp~~--~acr~A~~~LA~rL~~-- 740 (2316)
T PRK09169 669 LANALNALSKWPDEAACRAAALALAERLAREAGLRQAFDAQGVANALNAL----SKWPEE--EACRAAAEALAGRLAA-- 740 (2316)
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHhhcchhhhhhcCHHHHHHHHHHH----HhccCc--cHHHHHHHHHHHHHhc--
Confidence 4444445444 2455666666666433 3444444444433332 223333 4688999999999997
Q ss_pred CCcchHHHHHH-HHhhhhHHHHhccCCChhHHHHHHHHHHhhchhhhh
Q 000730 1138 VGSQREAFLEQ-IHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEI 1184 (1326)
Q Consensus 1138 ~~~~~~~~~eQ-v~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL~~ 1184 (1326)
+......|..| |-++|--|=-..+++ +|+.++-.++..+|.
T Consensus 741 ~~~l~~a~~aQ~lAnsLNaLsKwp~~~------~c~~a~~~La~~lg~ 782 (2316)
T PRK09169 741 DADLRQAMNPQGLANSLNALSKWPQEP------ACQQAALLLAERLGS 782 (2316)
T ss_pred ChHHHhhcCHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHhcc
Confidence 23344567655 667777766665544 788888888888777
No 241
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=24.81 E-value=1.2e+03 Score=27.60 Aligned_cols=113 Identities=14% Similarity=0.202 Sum_probs=70.3
Q ss_pred HHHHHHhccCCChhhHHHHHHHHHHHHhhhcccccccchhhHHHHHHHHHhhc--------Cc--------HHHHHHHHH
Q 000730 721 LHSCTTAICDRTKQSAEGAIQAVVEFVTKRGNELSETDVSRTTQSLLSAAVHI--------TD--------KHLRLETLG 784 (1326)
Q Consensus 721 l~~ll~~L~d~~~~~~~~A~~~L~~~l~~rg~~L~e~~V~~I~~~I~~~l~~i--------~~--------~~~r~~~l~ 784 (1326)
+..+..+|.........++-.+|+.++...|+.+. .+|-+-.+.-...++.+ .. +.+|...++
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a-~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~ 136 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALA-REVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIR 136 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHH-HHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHH
Confidence 55666777777777778888889999887776662 22332222222211111 11 278888888
Q ss_pred HHHHHhhccCchhHHHHHHhhhcccchhhhhccccCCCCchhHHHHhhcCc-ccHHHHHHHHHHHHc
Q 000730 785 AISCLAENTNSKIVFNEVLATAGKDIVTKDISRLRGGWPMQDAFHAFSQHA-VLSFLFLEHLISALN 850 (1326)
Q Consensus 785 ai~~La~~h~~~vV~~~Ll~~~~~~~~~~~~~~L~~~lP~d~~W~aLa~d~-~l~~~vL~~LL~~L~ 850 (1326)
=+..+-.+....+. ..+| -...+ +..+|+-+..|+ ++...||+.|-+.+-
T Consensus 137 F~Lsfl~~~~~~~~-~~lL--------------~~~~~-~~~l~k~l~~D~~~~v~~iL~~l~~~Vl 187 (330)
T PF11707_consen 137 FWLSFLSSGDPELK-RDLL--------------SQKKL-MSALFKGLRKDPPETVILILETLKDKVL 187 (330)
T ss_pred HHHHHHccCCHHHH-HHHH--------------HcCch-HHHHHhcccCCCHHHHHHHHHHHHHHhc
Confidence 88888877766555 4443 14444 667899999876 566666666665433
No 242
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=24.73 E-value=3.4e+02 Score=35.66 Aligned_cols=56 Identities=16% Similarity=0.242 Sum_probs=42.7
Q ss_pred ChhHHHHHHHHHhhhhccCchhhhhhccHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHHHH
Q 000730 1237 WPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSA-DAIVRATCSSSLGWLLK 1297 (1326)
Q Consensus 1237 ~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dp-dp~VR~~Aa~aL~~l~k 1297 (1326)
...||+--||++|.-+.---..+ -..-++.++.. |++|. |-.||-.|++|+.....
T Consensus 500 ~RiiRRRVa~ilg~Wvsvq~~~e----~k~l~Y~a~ln-LL~d~~D~vV~Ltt~~tlkl~vD 556 (978)
T KOG1993|consen 500 SRIIRRRVAWILGQWVSVQQKLE----LKPLLYCAFLN-LLQDQNDLVVRLTTARTLKLVVD 556 (978)
T ss_pred hhHHHHHHHHHHhhhhheechHh----HHHHHHHHHHH-hcCccccceeehHHHHHHHHhhh
Confidence 45689999999997765211111 12558899999 89998 99999999999988764
No 243
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=24.45 E-value=1e+03 Score=30.76 Aligned_cols=132 Identities=17% Similarity=0.176 Sum_probs=81.4
Q ss_pred HHhhccCCChhHHHHHHHHHHHHhccCCcCCcchhH--HhHHhhhcCcCcCCChHHHHHHHHHHHHhhhcCCCcchHHHH
Q 000730 1069 ILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPIL--LNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFL 1146 (1326)
Q Consensus 1069 ll~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l--~~l~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~~~~~ 1146 (1326)
++..+-|++..|--.++.++-+++-.-+ ...+.+ -+...++-....+....+|+.+...+.++.-.+....+..+.
T Consensus 424 lvqll~dp~~~i~~~~lgai~NlVmefs--~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~ 501 (678)
T KOG1293|consen 424 LVQLLMDPEIMIMGITLGAICNLVMEFS--NLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLL 501 (678)
T ss_pred HHHHhhCcchhHHHHHHHHHHHHHhhcc--cHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 3344456666777777777777764433 222222 233344555666778899999999999998755555555555
Q ss_pred HHHHhhhhHHHHhccCCChhHHHHHHHHHHhhchhhhhhhhhhhccccCCCCCCCChHHHHHHHHHHHHHhCcchHHHHH
Q 000730 1147 EQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEIGVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYM 1226 (1326)
Q Consensus 1147 eQv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL~~~l~~lf~~~~~~~~~~l~~~~f~~~i~k~L~~~~~~~~~~~l 1226 (1326)
..+....+ +-..+|+++.|-..|=.-|+.. ..+. ++...++.+++++.+..-.
T Consensus 502 ~ki~a~~i--~~l~nd~d~~Vqeq~fqllRNl-----------------~c~~--------~~svdfll~~~~~~ld~i~ 554 (678)
T KOG1293|consen 502 AKIPANLI--LDLINDPDWAVQEQCFQLLRNL-----------------TCNS--------RKSVDFLLEKFKDVLDKID 554 (678)
T ss_pred HHhhHHHH--HHHHhCCCHHHHHHHHHHHHHh-----------------hcCc--------HHHHHHHHHhhhHHHHHHH
Confidence 55655544 3445799999999884444331 1111 2345567777777776666
Q ss_pred HHH
Q 000730 1227 GST 1229 (1326)
Q Consensus 1227 ~~~ 1229 (1326)
.|.
T Consensus 555 l~l 557 (678)
T KOG1293|consen 555 LQL 557 (678)
T ss_pred HHH
Confidence 554
No 244
>PF10304 DUF2411: Domain of unknown function (DUF2411); InterPro: IPR019414 This entry represents a 38 residue domain of unknown function that is found at the extreme C-terminal end of some HEAT repeats.
Probab=23.64 E-value=1.5e+02 Score=23.49 Aligned_cols=31 Identities=23% Similarity=0.237 Sum_probs=24.2
Q ss_pred HHHHHHHHHHhccCCChhHHHHHHHHHHHHH
Q 000730 1266 TQVFGLLVVKLSQSADAIVRATCSSSLGWLL 1296 (1326)
Q Consensus 1266 e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~ 1296 (1326)
+.+.+.|.-.-..|+|+.||.-|..+|..|-
T Consensus 4 ~~l~r~Lk~V~~~D~D~lvr~hA~~~Le~Le 34 (36)
T PF10304_consen 4 EDLYRTLKYVESTDNDDLVREHAQDALEELE 34 (36)
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHh
Confidence 5566667664457999999999999987663
No 245
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=23.51 E-value=7e+02 Score=25.89 Aligned_cols=89 Identities=11% Similarity=0.090 Sum_probs=57.2
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHhhhcccccccchh--hHHHHHHHHHhhcCcHHHHH
Q 000730 703 RIVSSVCILLTKDELVATLHSCTTAICDRTKQSAEGAIQAVVEFVTKRGNELSETDVS--RTTQSLLSAAVHITDKHLRL 780 (1326)
Q Consensus 703 ~i~~~i~~~L~~~el~~ll~~ll~~L~d~~~~~~~~A~~~L~~~l~~rg~~L~e~~V~--~I~~~I~~~l~~i~~~~~r~ 780 (1326)
.||..|... +..=.+-+..+...|..++++...-|-.+|..+++..|..+..+ |+ +.++.+..-+...+.+.+|+
T Consensus 27 eicD~In~~--~~~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~e-vas~~fl~~l~~l~~~~~~~~Vk~ 103 (142)
T cd03569 27 EICDMIRSK--DVQPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDE-VASREFMDELKDLIKTTKNEEVRQ 103 (142)
T ss_pred HHHHHHhCC--CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHH-HhhHHHHHHHHHHHcccCCHHHHH
Confidence 556555432 23344566777778888888899999999999999999888422 43 22233332222245667777
Q ss_pred HHHHHHHHHhhccC
Q 000730 781 ETLGAISCLAENTN 794 (1326)
Q Consensus 781 ~~l~ai~~La~~h~ 794 (1326)
.++..|...+....
T Consensus 104 kil~li~~W~~~f~ 117 (142)
T cd03569 104 KILELIQAWALAFR 117 (142)
T ss_pred HHHHHHHHHHHHhC
Confidence 77777776665543
No 246
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=23.34 E-value=1.5e+03 Score=28.11 Aligned_cols=161 Identities=16% Similarity=0.108 Sum_probs=93.2
Q ss_pred HHhhhcCcCcCCChHHHHHHHHHHHHhhhcCCCcchHHHHHHHHhhhhHHHHh--ccCCChhHHHHHHHHHHhhchhhhh
Q 000730 1107 LSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILH--IYDDDLSVRQACRNTLKQVAPFMEI 1184 (1326)
Q Consensus 1107 l~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~LvpLLlH--L~D~~~~V~~ack~tL~~~a~lL~~ 1184 (1326)
+..++-..|+..+.++-.++.-..|++++. +.-+...+..+..+-|+.++.. -.|.|..+.-||-.||+..+.=
T Consensus 316 ~l~~~~sw~~S~d~~l~t~g~LaigNfaR~-D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IP--- 391 (604)
T KOG4500|consen 316 FLDFLESWFRSDDSNLITMGSLAIGNFARR-DDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIP--- 391 (604)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhhhcc-chHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhcccc---
Confidence 344567889999999999988889998873 3345667778888889888875 5556667778999999987631
Q ss_pred hhhhhhccccCCCCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHHhhcCCChhHHHHHHHHHhhhhccCchhhhhhcc
Q 000730 1185 GVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLF 1264 (1326)
Q Consensus 1185 ~l~~lf~~~~~~~~~~l~~~~f~~~i~k~L~~~~~~~~~~~l~~~l~y~kS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~ 1264 (1326)
+.++..+-. .+ ....+...+..+.| .+.+-+.-++....+.++.+-. +. .+
T Consensus 392 ----v~nka~~~~-----aG-vteaIL~~lk~~~p-pv~fkllgTlrM~~d~qe~~a~----------------eL--~k 442 (604)
T KOG4500|consen 392 ----VSNKAHFAP-----AG-VTEAILLQLKLASP-PVTFKLLGTLRMIRDSQEYIAC----------------EL--AK 442 (604)
T ss_pred ----CCchhhccc-----cc-hHHHHHHHHHhcCC-cchHHHHHHHHHHHhchHHHHH----------------HH--hc
Confidence 111110100 01 22233333333322 2222233334444443332211 00 11
Q ss_pred HHHHHHHHHHHhccCCChh-HHHHHHHHHHHHHHHccc
Q 000730 1265 YTQVFGLLVVKLSQSADAI-VRATCSSSLGWLLKSINS 1301 (1326)
Q Consensus 1265 ~e~l~~~L~~~Ll~Dpdp~-VR~~Aa~aL~~l~k~~~~ 1301 (1326)
-..++.-|.+ .-+.||-. |---.-+.|.-|-|.|++
T Consensus 443 n~~l~ekLv~-Wsks~D~aGv~gESnRll~~lIkHs~~ 479 (604)
T KOG4500|consen 443 NPELFEKLVD-WSKSPDFAGVAGESNRLLLGLIKHSKY 479 (604)
T ss_pred CHHHHHHHHH-hhhCCccchhhhhhhHHHHHHHHhhHh
Confidence 1345666777 77778766 766666777777777554
No 247
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=23.21 E-value=9.2e+02 Score=32.27 Aligned_cols=112 Identities=20% Similarity=0.167 Sum_probs=74.3
Q ss_pred HHHHHhhccCC-ChhHHHHHHHHHHHHhccCCcCCcchhHHh-HHhhhcCcCcC-CChHHHHHHHHHHHHhhhcCCCcch
Q 000730 1066 LSVILALLDDL-DESVQLTAVSCLLTILKSSSKDAVEPILLN-LSVRLRNLQVS-MNVKMRRNAFAAFGALSNFGVGSQR 1142 (1326)
Q Consensus 1066 L~all~~L~d~-d~~V~leAm~~L~~lL~~l~~~~~~~~l~~-l~~~lrpffed-e~~~vR~aAi~LfG~L~~~~~~~~~ 1142 (1326)
+..++.||... |+...++|+.-|...|--..+..++.|-++ +.-.|-.+..+ -|.++-.-|.+..-.|..+...+..
T Consensus 169 ~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a 248 (1051)
T KOG0168|consen 169 AKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSA 248 (1051)
T ss_pred HHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhh
Confidence 34567888876 788999999999999877666655543322 11122223333 3589999999999999987666554
Q ss_pred HHHHHHHHhhhhHHHHhccC-CChhHHHHHHHHHHhhch
Q 000730 1143 EAFLEQIHAMLPRLILHIYD-DDLSVRQACRNTLKQVAP 1180 (1326)
Q Consensus 1143 ~~~~eQv~~~LvpLLlHL~D-~~~~V~~ack~tL~~~a~ 1180 (1326)
....+++.- -|+-.|+- ++.+|++.|=.||..+..
T Consensus 249 ~vV~~~aIP---vl~~kL~~IeyiDvAEQ~LqALE~iSR 284 (1051)
T KOG0168|consen 249 IVVDEHAIP---VLLEKLLTIEYIDVAEQSLQALEKISR 284 (1051)
T ss_pred eeecccchH---HHHHhhhhhhhhHHHHHHHHHHHHHHh
Confidence 444444333 33333333 488999999999988764
No 248
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=23.11 E-value=1.1e+02 Score=31.95 Aligned_cols=40 Identities=25% Similarity=0.409 Sum_probs=32.0
Q ss_pred HHHHHHHHhhcCCCChhHHHHHhhhccCCcchhhhhhHHH
Q 000730 1025 EQMVEALCRHVSDESPTVRGLCLRGLVQIPSIHIHQYATQ 1064 (1326)
Q Consensus 1025 ~~~i~~L~~~l~D~~~~VR~lsLrGLgnl~~~~v~~~~~~ 1064 (1326)
+.+-+.+..-+.++++.|+++||+.+..--...+.+|.+.
T Consensus 16 ~~l~~~~~~LL~~~d~~vQklAL~cll~~k~~~l~pY~d~ 55 (141)
T PF07539_consen 16 DELYDALLRLLSSRDPEVQKLALDCLLTWKDPYLTPYKDN 55 (141)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcHHHHhHHHH
Confidence 4456677788899999999999999998766667777654
No 249
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=23.04 E-value=7.9e+02 Score=32.81 Aligned_cols=190 Identities=16% Similarity=0.156 Sum_probs=115.6
Q ss_pred hhhcc-ccccchHHHHHHHHHhhhcCC---chhhHHHHHHHHHHhhcCCC-ChhHHHHHhhhccCCcch-------hhhh
Q 000730 993 KSINR-QQRFQREAAAAALSEFVRYSG---GFDSLLEQMVEALCRHVSDE-SPTVRGLCLRGLVQIPSI-------HIHQ 1060 (1326)
Q Consensus 993 ~~L~s-~~~~~Ri~a~aflsELl~~~~---~~~~l~~~~i~~L~~~l~D~-~~~VR~lsLrGLgnl~~~-------~v~~ 1060 (1326)
-.|+. .++.+.+-|..=+.|.|--.. ......+.++-+|..-++++ |+.+-.+|+|+|.++-.. -|+.
T Consensus 174 ~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~ 253 (1051)
T KOG0168|consen 174 QGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDE 253 (1051)
T ss_pred HhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecc
Confidence 33444 377777877777777776321 23455688888888888886 899999999999987421 1221
Q ss_pred hHHHHHHHHHhhccCCC-hhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCcCCChHHHHHHHHHHHHhhhcCCC
Q 000730 1061 YATQVLSVILALLDDLD-ESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVG 1139 (1326)
Q Consensus 1061 ~~~~lL~all~~L~d~d-~~V~leAm~~L~~lL~~l~~~~~~~~l~~l~~~lrpffede~~~vR~aAi~LfG~L~~~~~~ 1139 (1326)
-.+|+++.-|.--. -+|+-.++.+|-+|-+.=+..-+.+--+..+..-..|| +-.+...|+..-.+.++.-.
T Consensus 254 ---~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~AiL~AG~l~a~LsylDFF---Si~aQR~AlaiaaN~Cksi~- 326 (1051)
T KOG0168|consen 254 ---HAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPKAILQAGALSAVLSYLDFF---SIHAQRVALAIAANCCKSIR- 326 (1051)
T ss_pred ---cchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccHHHHhcccHHHHHHHHHHH---HHHHHHHHHHHHHHHHhcCC-
Confidence 24666666665422 35888888888887665443333333344444444566 56888899998888887543
Q ss_pred cchHHHHHHHHhhhhHHHHhccCCChhHHHHHHHHHHhhc-hhhhh--hhhhhhcc
Q 000730 1140 SQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVA-PFMEI--GVYGIFNS 1192 (1326)
Q Consensus 1140 ~~~~~~~eQv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a-~lL~~--~l~~lf~~ 1192 (1326)
++...|.-.++-.|-|||-| .+..++.-.-.+|.+++ .+..- ++.+++..
T Consensus 327 sd~f~~v~ealPlL~~lLs~---~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~ 379 (1051)
T KOG0168|consen 327 SDEFHFVMEALPLLTPLLSY---QDKKPIESVCICLTRIADGFQHGPDKLDQLCSH 379 (1051)
T ss_pred CccchHHHHHHHHHHHHHhh---ccchhHHHHHHHHHHHHHhcccChHHHHHHhch
Confidence 33344444445555555544 34445544444455554 34444 55555543
No 250
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=22.90 E-value=1.9e+03 Score=29.13 Aligned_cols=303 Identities=12% Similarity=0.111 Sum_probs=141.9
Q ss_pred ChHHHHHHHHHHHHHhhcchHHHHHHHhcCCCC-----ChhhHHHHHH-------HHHHHHhhcCc---hhHHHHHHHHh
Q 000730 928 EPLRAILTSFQAFCECVGDLEMRKILARDGEQN-----DKEKWINLIG-------DVAGCVSIKRP---KEVQTICLILT 992 (1326)
Q Consensus 928 ~P~~~aleAlk~ll~~~g~~~~~~~L~~~g~W~-----~~e~~~~gV~-------lLAr~m~~~~~---~~~~~i~~~L~ 992 (1326)
.|....+.+|+.||++.|.. -|. ++....+.|- .|.++-..... ..++.++.-+.
T Consensus 229 ~~l~~lL~~l~~lL~k~~~~----------FW~~~~~~~p~~ild~If~np~f~~~L~~~~~~~~~~~~~~~~~~~sWi~ 298 (727)
T PF12726_consen 229 PPLPILLRCLSILLEKLGSD----------FWDAMGPISPQVILDQIFDNPAFKKLLLQSQEDEISESDDDLPDLLSWIS 298 (727)
T ss_pred hhHHHHHHHHHHHHHhCHHH----------HhcccCCCCHHHHHHHHhCChHHHHHHHhhccCCccccchhhHHHHHHHH
Confidence 36678999999999887652 133 2222222221 12221111100 01567777778
Q ss_pred hhhccccccchHHHHHHHHHhhhcCCchhhHHHHHHHHHHhhc-CCCChh-HHHHHhhhccCCcchhhhhhHHHHHHHHH
Q 000730 993 KSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHV-SDESPT-VRGLCLRGLVQIPSIHIHQYATQVLSVIL 1070 (1326)
Q Consensus 993 ~~L~s~~~~~Ri~a~aflsELl~~~~~~~~l~~~~i~~L~~~l-~D~~~~-VR~lsLrGLgnl~~~~v~~~~~~lL~all 1070 (1326)
|+++|-...+|.-++..+ +..|.+.+ +++.+. .|..|++.. ...++.++.
T Consensus 299 pf~~SL~~~~~~~~~~~l-----------------~~~Ll~~~q~~~~~~~~r~~c~~~~-----------~~~L~~~l~ 350 (727)
T PF12726_consen 299 PFLRSLSPSQRSQACRKL-----------------LHFLLERLQHDRFPDEARAACLRAG-----------LDALLSTLR 350 (727)
T ss_pred HHHHHhcccchhhHHHHH-----------------HHHHHHHHhccccchhHHHHHHHHH-----------HHHHHHHHH
Confidence 888877777775555443 33444444 334444 777777721 122333333
Q ss_pred hhccCCC--hhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCcCCChHHHHHHHHHHHHhhhc------------
Q 000730 1071 ALLDDLD--ESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNF------------ 1136 (1326)
Q Consensus 1071 ~~L~d~d--~~V~leAm~~L~~lL~~l~~~~~~~~l~~l~~~lrpffede~~~vR~aAi~LfG~L~~~------------ 1136 (1326)
.-.++.. ..+..-++.....++..-- +...... -...+-.+.....+..+|+.++.+..++
T Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~--~~~~~~~~~~~~~~~~~a~~vi~~~l~~D~~~l~~~~~~l 425 (727)
T PF12726_consen 351 SFNDNERSDFSTALITINDTRNLVSNYI---IRDAIIP--AAKFKIEGWSNSSVSNSAMKVIRNALALDILSLCEESQAL 425 (727)
T ss_pred hcccccccccchhHhhHHHHHHHHHhhh---hhhhccC--hhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3222211 1233333332222222111 0000000 0001112335677788888777766652
Q ss_pred -CCCcchHHHHHHHHhhhhHHHHhccCCChhHHHHHHHHHHhhchhhhhhhhhhhccccCCCCCCCC----hHHHHHHHH
Q 000730 1137 -GVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEIGVYGIFNSHCFNSDHRSD----YETFVRDLT 1211 (1326)
Q Consensus 1137 -~~~~~~~~~~eQv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL~~~l~~lf~~~~~~~~~~l~----~~~f~~~i~ 1211 (1326)
.++.........--..+-.++.|+..+++..+++-=.++..++.+..-..+. .+..+.. ...+ ++.+..-++
T Consensus 426 ~~~~~~~~~~~~~~~~lW~~l~~~~~~~~~~la~~lL~~~~~l~~l~~~~~~~--~~~~~~~-~~~~~N~~~~~~~~~~~ 502 (727)
T PF12726_consen 426 LRGKPLQPAVSRISPNLWKALLKSLDSDNPDLAKALLKSLSPLIGLEKFPPKK--EKDELDP-AKTQFNKSLGQITDLIS 502 (727)
T ss_pred hcCCCcCCcchhhhHHHHHHHHHhhcCCChHHHHHHHHHHHHhccccccCCcc--cccCcch-HHHHHHHHHHHHHHHHH
Confidence 1111112222222344556677788888886666655555555544441121 1111111 1111 233322222
Q ss_pred HH---HHHhCcchHHHHHH------HHHHhhcCCChhHHHHHHHHHhhhhccCchhhhhhccHHHHHHHHHHHhccCCCh
Q 000730 1212 RQ---FVQHFPSRIDSYMG------STIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADA 1282 (1326)
Q Consensus 1212 k~---L~~~~~~~~~~~l~------~~l~y~kS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp 1282 (1326)
+. +..-.|+.+..++. ..+..+=||...++.+|.-+++....- +.-.+++++++.+.|++
T Consensus 503 ~il~rls~~~~~~L~~l~~d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d~-----------~~R~e~i~~ll~~~~~~ 571 (727)
T PF12726_consen 503 QILERLSDFDPSHLKELLSDPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFDV-----------DGRLEAIQALLQSNFSP 571 (727)
T ss_pred HHHHHHhcCCHHHHHHHHcCcchhhHHHhheeCCChHHHHHHHHHHHHHhcC-----------CcHHHHHHHHHHHhHHH
Confidence 22 22333555555444 233455688889999999888866532 22233455544445666
Q ss_pred hHHHH
Q 000730 1283 IVRAT 1287 (1326)
Q Consensus 1283 ~VR~~ 1287 (1326)
.++..
T Consensus 572 tL~ai 576 (727)
T PF12726_consen 572 TLSAI 576 (727)
T ss_pred HHHHH
Confidence 66653
No 251
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.78 E-value=1.4e+03 Score=27.51 Aligned_cols=158 Identities=15% Similarity=0.098 Sum_probs=87.5
Q ss_pred cCcC-CChHHHHHHHHHHHHhhhcC-CCcchHH-HHHHHHhhhhHHHHhccCCChhHHHHHHHHHHhhchhhhh-hhhhh
Q 000730 1114 LQVS-MNVKMRRNAFAAFGALSNFG-VGSQREA-FLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEI-GVYGI 1189 (1326)
Q Consensus 1114 ffed-e~~~vR~aAi~LfG~L~~~~-~~~~~~~-~~eQv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL~~-~l~~l 1189 (1326)
+.+| ...++|..+=....-|.+.. ..+-|.. .+.+....++.|++.-.| +|.|.++.-.+++.++ |+. +=.+-
T Consensus 291 ~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~-~p~Vi~~~~a~i~~l~--LR~pdhsa~ 367 (461)
T KOG4199|consen 291 CIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSD-DPLVIQEVMAIISILC--LRSPDHSAK 367 (461)
T ss_pred HHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCC-ChHHHHHHHHHHHHHH--hcCcchHHH
Confidence 4555 44677855554444443322 2233333 455677888888887666 6777776544444333 222 11111
Q ss_pred hccccCCCCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHHhhcCCChhHHHHHHHHHhhhhccCchhhh--hhccHHH
Q 000730 1190 FNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHI--LSLFYTQ 1267 (1326)
Q Consensus 1190 f~~~~~~~~~~l~~~~f~~~i~k~L~~~~~~~~~~~l~~~l~y~kS~~~~IR~aA~~fiG~l~~~~~~~~~--~~~~~e~ 1267 (1326)
+ .+.| ..++.-.-|+.||-+ ..++++|++.|--++-....+.. ...+.|
T Consensus 368 ~----ie~G--------~a~~avqAmkahP~~----------------a~vQrnac~~IRNiv~rs~~~~~~~l~~GiE- 418 (461)
T KOG4199|consen 368 A----IEAG--------AADLAVQAMKAHPVA----------------AQVQRNACNMIRNIVVRSAENRTILLANGIE- 418 (461)
T ss_pred H----Hhcc--------hHHHHHHHHHhCcHH----------------HHHHHHHHHHHHHHHHhhhhccchHHhccHH-
Confidence 1 0011 123344445555543 34889999999888776653221 222334
Q ss_pred HHHHHHHHhccCCChhHHHHHHHHHHHHH-HHccccccccc
Q 000730 1268 VFGLLVVKLSQSADAIVRATCSSSLGWLL-KSINSHSWRST 1307 (1326)
Q Consensus 1268 l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~-k~~~~~~~~~~ 1307 (1326)
.|++ +-+-..+.++..|..||.-|+ ..-+.-.|.+.
T Consensus 419 ---~Li~-~A~~~h~tce~~akaALRDLGc~v~lre~wtg~ 455 (461)
T KOG4199|consen 419 ---KLIR-TAKANHETCEAAAKAALRDLGCDVYLREEWTGA 455 (461)
T ss_pred ---HHHH-HHHhcCccHHHHHHHHHHhcCcchhhHHHhccc
Confidence 3444 556689999999999998887 33334456553
No 252
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=22.60 E-value=4.5e+02 Score=31.16 Aligned_cols=72 Identities=14% Similarity=0.216 Sum_probs=47.3
Q ss_pred hHHHHHHHHHHhhcCCCChhHHHHHhhhccCCcch--h---------hhhhHHHHHHHHHhhccCCChh-HHHHHHHHHH
Q 000730 1022 SLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI--H---------IHQYATQVLSVILALLDDLDES-VQLTAVSCLL 1089 (1326)
Q Consensus 1022 ~l~~~~i~~L~~~l~D~~~~VR~lsLrGLgnl~~~--~---------v~~~~~~lL~all~~L~d~d~~-V~leAm~~L~ 1089 (1326)
...+.+++.+.-+.+++++.|-..||+.|..+... + .+.|.-.++.-++.-+-|++-. .--.-...|.
T Consensus 161 ~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~~~~~~~~~F~~~y~~~il~~if~vltD~~Hk~gf~~q~~iL~ 240 (319)
T PF08767_consen 161 EQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSKTNPEFANQFYQQYYLDILQDIFSVLTDSDHKSGFKLQSQILS 240 (319)
T ss_dssp HHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHHHHHHSTT-GGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCcccHHHHHHHHHHHH
Confidence 34566888999999999999999999999977532 1 1344455666666666665522 2223335555
Q ss_pred HHhc
Q 000730 1090 TILK 1093 (1326)
Q Consensus 1090 ~lL~ 1093 (1326)
+++.
T Consensus 241 ~Lf~ 244 (319)
T PF08767_consen 241 NLFR 244 (319)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5554
No 253
>PF14228 MOR2-PAG1_mid: Cell morphogenesis central region
Probab=22.19 E-value=2.3e+03 Score=29.96 Aligned_cols=295 Identities=12% Similarity=0.160 Sum_probs=0.0
Q ss_pred HHHHHHHhhhhccccccchHHHHHHHHHhhhcCCchhhHHHHHHHHHHhhcCCCChhHHHHHhhhccCCcch----hhhh
Q 000730 985 QTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI----HIHQ 1060 (1326)
Q Consensus 985 ~~i~~~L~~~L~s~~~~~Ri~a~aflsELl~~~~~~~~l~~~~i~~L~~~l~D~~~~VR~lsLrGLgnl~~~----~v~~ 1060 (1326)
+.++.+++|+|++.....|-+++..+.. ....+.+.++..|.--+.+-+...+.. .++.... .++.
T Consensus 195 R~LFk~ivPlLks~~~~~r~AaVlaLG~------~n~~v~~~LleeL~~~i~~~~~e~e~r----~~~k~rr~Rrd~LR~ 264 (1120)
T PF14228_consen 195 RELFKLIVPLLKSESSSFRDAAVLALGS------INLNVYRTLLEELQSYIEECNSEAESR----PKWKRRRRRRDRLRT 264 (1120)
T ss_pred HHHHHHHhhhhccCcHHHHHHHHHhcCC------CCHHHHHHHHHHHHHHHHHHHHHHhcc----cccccchhhhhhHHH
Q ss_pred hHHHHHHHHHhhccC---CChhHHH----HHHHHHHHHhc---cCCcCCcchhHHhHHhhhcCcCcC--------CChHH
Q 000730 1061 YATQVLSVILALLDD---LDESVQL----TAVSCLLTILK---SSSKDAVEPILLNLSVRLRNLQVS--------MNVKM 1122 (1326)
Q Consensus 1061 ~~~~lL~all~~L~d---~d~~V~l----eAm~~L~~lL~---~l~~~~~~~~l~~l~~~lrpffed--------e~~~v 1122 (1326)
..-.++.-+.+.+.+ .++.+.. +=+.....-+. .-....+..+-...|--++.++.. -..+.
T Consensus 265 ev~hVl~llAe~l~p~~l~~d~~L~~~lv~fIk~~~~fL~~~~~q~~~elQ~LR~~fc~ll~~l~~~~~~~~se~fpfe~ 344 (1120)
T PF14228_consen 265 EVTHVLRLLAEFLKPGVLNDDWILRNNLVEFIKETKQFLEDEEVQNDWELQRLRYHFCGLLRNLAVGIVKAKSEWFPFEA 344 (1120)
T ss_pred HHHHHHHHHHhhcChhhccchHHHHHHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHHhhhchhhcCCHHH
Q ss_pred HHHHHHHHHHhhhcCC----CcchHHHHHHHHhhhhHHHHhccCCChhHHHHH-----HHHHHhhc--------------
Q 000730 1123 RRNAFAAFGALSNFGV----GSQREAFLEQIHAMLPRLILHIYDDDLSVRQAC-----RNTLKQVA-------------- 1179 (1326)
Q Consensus 1123 R~aAi~LfG~L~~~~~----~~~~~~~~eQv~~~LvpLLlHL~D~~~~V~~ac-----k~tL~~~a-------------- 1179 (1326)
|.++|.+|.+=+.++. -.....++.++-.......-..+|+.....-+. +..|...|
T Consensus 345 RkslF~l~~eWCGy~~~~~~~~~~s~~rre~~r~~~~~~~r~kd~~~~~~~~~~Ie~~~~~L~~aAl~AMAaLc~GPif~ 424 (1120)
T PF14228_consen 345 RKSLFNLFEEWCGYSPSQWGQDGRSDYRREVERYKSSQLQREKDSRERATAEMEIEEQKRNLRTAALSAMAALCGGPIFD 424 (1120)
T ss_pred HHHHHHHHHHHhhhhcccccccchhhHHHHHHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc
Q ss_pred --------hhhhh--hhhhh------hccccCCCCCCCCh-----------------------HHHHHHHHHHHHHhCcc
Q 000730 1180 --------PFMEI--GVYGI------FNSHCFNSDHRSDY-----------------------ETFVRDLTRQFVQHFPS 1220 (1326)
Q Consensus 1180 --------~lL~~--~l~~l------f~~~~~~~~~~l~~-----------------------~~f~~~i~k~L~~~~~~ 1220 (1326)
..|.| .+-.. +.-.+... +.+.| ...-+.-.+.|..++++
T Consensus 425 ~~~~~~~grmlsWId~if~s~s~r~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lgr~AL~nLL~~N~d 503 (1120)
T PF14228_consen 425 DNASKPSGRMLSWIDSIFNSPSDRMPIGYSPLDP-RTMSYSKHAGEGPRGATGRDKQKSSHARHSLGRRALKNLLEHNPD 503 (1120)
T ss_pred cchhcccchHHHHHHHHHcCCCCCCcCCCCCCCc-cCcccccccCcccccccchhhhccchHHHHHHHHHHHHHHHhhHH
Q ss_pred hHHHHHHHHHHhhcCCChhHHHHHHHHHhhhhccCchhhhhhccHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHH
Q 000730 1221 RIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLLKS 1298 (1326)
Q Consensus 1221 ~~~~~l~~~l~y~kS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k~ 1298 (1326)
.+.+.+.+| |..+ ++.|..+-.-+..-+-.......+...+++--.- ..-||+..||..|.+=|..+-+.
T Consensus 504 Ll~~~IdrC--Yss~-----~~va~gYF~vlaev~~~~~~~~~~~~~LL~L~Lf-klg~~~~eIR~~A~qLL~~Le~R 573 (1120)
T PF14228_consen 504 LLDWVIDRC--YSSS-----PRVAEGYFTVLAEVFSEREYPPCPFWELLNLVLF-KLGDESSEIRSKAMQLLRALEER 573 (1120)
T ss_pred HHHHHHHHh--cCCC-----hhHHHHHHHHHHHHHHcCCCCCCCHHHhHHHHHH-hhcCCcHHHHHHHHHHHHHHHHH
No 254
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=21.23 E-value=3.8e+02 Score=37.74 Aligned_cols=30 Identities=13% Similarity=-0.065 Sum_probs=22.4
Q ss_pred hhhhhHHHHhhccccCCChhHHHHHHHHHH
Q 000730 622 LCLGNRVIMYLPRCADTDSEVRKISAQILD 651 (1326)
Q Consensus 622 ~~lG~Lvg~l~prC~D~~~~iR~~A~~~i~ 651 (1326)
.+||.|||+|.+.|.-.--.|-..|.-++-
T Consensus 481 GALaFLVg~LSY~~qs~tLaIIEsaGGILR 510 (2195)
T KOG2122|consen 481 GALAFLVGTLSYEGQSNTLAIIESAGGILR 510 (2195)
T ss_pred chHHHHHhhccccCCcchhhhhhcCccHHH
Confidence 389999999999998776666555544443
No 255
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.76 E-value=2.3e+02 Score=34.41 Aligned_cols=68 Identities=22% Similarity=0.285 Sum_probs=55.4
Q ss_pred HHHHhhccCCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCcCCChHHHHHHHHHHHHhhh
Q 000730 1067 SVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSN 1135 (1326)
Q Consensus 1067 ~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~l~~~lrpffede~~~vR~aAi~LfG~L~~ 1135 (1326)
.-++.-+...+..|..+|+.+|.+++.. -...+.+-.-.+...+++.+-|++..||..++.++-.++-
T Consensus 61 keLl~qlkHhNakvRkdal~glkd~l~s-~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~ 128 (393)
T KOG2149|consen 61 KELLSQLKHHNAKVRKDALNGLKDLLKS-HPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLIL 128 (393)
T ss_pred HHHHhhhcCchHhhhHHHHHHHHHHHHh-ChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHh
Confidence 3345556667889999999999999987 3344555667788899999999999999999999888664
No 256
>KOG2090 consensus Metalloendopeptidase family - mitochondrial intermediate peptidase [Posttranslational modification, protein turnover, chaperones]
Probab=20.39 E-value=2.3e+02 Score=35.92 Aligned_cols=79 Identities=19% Similarity=0.210 Sum_probs=45.8
Q ss_pred ccccCCChhHHHHHHHHHHHHHHHHhhCCCCCCCCCCcchhhhhhhhhhcHHHHHHhccCCCCChhH-HHHHHHHHH---
Q 000730 633 PRCADTDSEVRKISAQILDQLFSISLSLPRPVGSSSGIDLELSYGALSSLEDVIAILRSDASIDPSE-VFNRIVSSV--- 708 (1326)
Q Consensus 633 prC~D~~~~iR~~A~~~i~~Ll~I~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~-~~~~i~~~i--- 708 (1326)
-||++|+++.++.|-+|--.++.+.-.++.. ...+.+|++..+....++. .|+.. +-..+...|
T Consensus 104 vR~aHPd~~fv~aAe~a~~~~~e~ve~LNTn---------~~LY~~Lk~~l~~~~~l~~---~d~e~~v~~lll~DFE~s 171 (704)
T KOG2090|consen 104 VRQAHPDPEFVEAAEEACRSMFELVESLNTN---------VALYQKLKKVLQDSSRLDD---LDPETYVARLLLDDFEKS 171 (704)
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHHHHhccC---------HHHHHHHHHHhcCcccccc---cCHHHHHHHHHHHHHHhh
Confidence 3799999999999999999998887655431 1225555543221111211 24332 111122222
Q ss_pred HccCChhHHHHHHHH
Q 000730 709 CILLTKDELVATLHS 723 (1326)
Q Consensus 709 ~~~L~~~el~~ll~~ 723 (1326)
+.+|++++...|+.-
T Consensus 172 GIhL~~~kr~kfv~L 186 (704)
T KOG2090|consen 172 GIHLDPEKREKFVQL 186 (704)
T ss_pred cccCCHHHHHHHHHH
Confidence 368888888777754
No 257
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=20.21 E-value=5.6e+02 Score=26.61 Aligned_cols=88 Identities=10% Similarity=0.017 Sum_probs=64.2
Q ss_pred HHHHHHHHHhCcchHHHHHHHHHHhhcCCChhHHHHHHHHHhhhhccCchhhhhhccHHHHHHHHHHHhccCCChhHHHH
Q 000730 1208 RDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRAT 1287 (1326)
Q Consensus 1208 ~~i~k~L~~~~~~~~~~~l~~~l~y~kS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~ 1287 (1326)
.++|-.+- ..+.....-+...-..++++.+++..-|...+..++++.......++......+.|..++...+++.|+.+
T Consensus 26 leicD~In-~~~~~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~k 104 (142)
T cd03569 26 LEICDMIR-SKDVQPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQK 104 (142)
T ss_pred HHHHHHHh-CCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHH
Confidence 36666553 33455555566666688889999999999999999999876666667677778888884444789999998
Q ss_pred HHHHHHHHH
Q 000730 1288 CSSSLGWLL 1296 (1326)
Q Consensus 1288 Aa~aL~~l~ 1296 (1326)
+.+-+..-.
T Consensus 105 il~li~~W~ 113 (142)
T cd03569 105 ILELIQAWA 113 (142)
T ss_pred HHHHHHHHH
Confidence 877754443
No 258
>PRK09169 hypothetical protein; Validated
Probab=20.14 E-value=3.2e+03 Score=30.81 Aligned_cols=314 Identities=17% Similarity=0.108 Sum_probs=162.3
Q ss_pred ChHHHHHHHH-------HHHHHhhcchHHHHHHHhcCCCCChhhHHHHHHHHHHHHhhc-------CchhHHHHHHHHhh
Q 000730 928 EPLRAILTSF-------QAFCECVGDLEMRKILARDGEQNDKEKWINLIGDVAGCVSIK-------RPKEVQTICLILTK 993 (1326)
Q Consensus 928 ~P~~~aleAl-------k~ll~~~g~~~~~~~L~~~g~W~~~e~~~~gV~lLAr~m~~~-------~~~~~~~i~~~L~~ 993 (1326)
.+|+.+.+.+ ..++...+.+++...+.--..|.....--+|+..||.-+..- ++.++...++-+.|
T Consensus 179 ~~c~~aa~~lA~~la~~~~l~~al~~q~va~~lnalSKwp~~~~cr~a~~~lA~rL~~~~~l~~~l~~q~va~~LNAlSK 258 (2316)
T PRK09169 179 TDCQTAAEQLADRLASDSRLLQAMDAQEVANALNALSKWPDSPRCRNAAERLAERLADEPGLLQSLRAQEVALLLNALSK 258 (2316)
T ss_pred hHHHHHHHHHHHHhccCHHHHHhcchHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhcChHHHHhcCHHHHHHHHHHHhc
Confidence 3477777776 444555667777777777778987788888999898877642 35677777887777
Q ss_pred hhccccccchHHHHHHHHHhhhcCCchh----hHHHHHHHHHHhhcCCCC--hhHHHHHhhhccCCcchhhhhhHHHHHH
Q 000730 994 SINRQQRFQREAAAAALSEFVRYSGGFD----SLLEQMVEALCRHVSDES--PTVRGLCLRGLVQIPSIHIHQYATQVLS 1067 (1326)
Q Consensus 994 ~L~s~~~~~Ri~a~aflsELl~~~~~~~----~l~~~~i~~L~~~l~D~~--~~VR~lsLrGLgnl~~~~v~~~~~~lL~ 1067 (1326)
.-.+ +..|-++-++-.++-..+.... .-+-.++|.|.+|=.++. ..+..++-|=..... ....+-++-+.
T Consensus 259 Wp~~--~~c~~aa~~lA~rla~~~~lr~~~~~Q~vAN~LNALSKwp~~~~cr~aa~~LA~rL~~~~~--l~~~~~aQ~vA 334 (2316)
T PRK09169 259 WPDD--EACRQAAEALAARLAREPGLRLALDPQGVANALNALSKWPDTEACRQAAEALAERLAQERG--LLQAMNAQAVA 334 (2316)
T ss_pred CCCC--hHHHHHHHHHHHHHhcChhhhhhcCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhChh--hhhhCCHHHHH
Confidence 7333 3334444444334443343321 112346777777764432 123334333111111 12223344445
Q ss_pred HHHhhccC-CChhHHHHHHHHHHHHh-------ccCCcCCcchhHHhHHhhhcCcCcCCChHHHHHHHHHHHHhhhcCCC
Q 000730 1068 VILALLDD-LDESVQLTAVSCLLTIL-------KSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVG 1139 (1326)
Q Consensus 1068 all~~L~d-~d~~V~leAm~~L~~lL-------~~l~~~~~~~~l~~l~~~lrpffede~~~vR~aAi~LfG~L~~~~~~ 1139 (1326)
-.+++|.. .+...-..|+..|..-| +.+..+.+.+.+-.++. . .+.+..|.+|-.|.+.|.+- .
T Consensus 335 N~LNALSKWp~~~~c~~Aa~~LA~rL~~~~~l~~~~npQelANaLnALSK----w--p~~~~cr~AA~aLA~rL~~~--~ 406 (2316)
T PRK09169 335 NALNALSKWPDEEACRAAAEALAARLARDAGLRRALNAQELANALNALSK----W--PDEEACRAAAEALAARLARD--A 406 (2316)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHhChhhhhhCCHHHHHHHHHHHHc----C--CCchHHHHHHHHHHHHHHhc--h
Confidence 55555554 23444444555554443 44455555555544442 1 24566899999999998762 2
Q ss_pred cchHHHHHH-HHhhhhHHHHhccCCChhHHHHHHHHHHhhchhhhh--hhhhhhccccCCCCCCCChHHHHHHHHHHHHH
Q 000730 1140 SQREAFLEQ-IHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEI--GVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQ 1216 (1326)
Q Consensus 1140 ~~~~~~~eQ-v~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL~~--~l~~lf~~~~~~~~~~l~~~~f~~~i~k~L~~ 1216 (1326)
...+.|.-| |-+++-- +--+.|.. .|+.+...++.-+.- .+.. .++--+.-|.+ ..
T Consensus 407 ~l~~~fnaQ~vANaLnA-LsKWp~~~-----~c~~aa~aLA~rl~~~a~lr~-----------~fn~QeLaN~L-nA--- 465 (2316)
T PRK09169 407 GLRAALNAQGVANALNA-LSKWPGAE-----ACRQAALALAARLAADARLRN-----------ALSAQELANAL-NA--- 465 (2316)
T ss_pred hhhhhcChHHHHHHHHH-HhcCCCch-----HHHHHHHHHHHHHhhchhhhh-----------hCCHHHHHHHH-HH---
Confidence 234456656 3333333 22333322 233333333322211 1111 12211222111 11
Q ss_pred hCcchHHHHHHHHHHhhcCCC-hhHHHHHHHHHhhhhccCchhhhhhccHHHHHHHHHHHhccCCChhHHHHHHHHH
Q 000730 1217 HFPSRIDSYMGSTIQAFEAPW-PIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSL 1292 (1326)
Q Consensus 1217 ~~~~~~~~~l~~~l~y~kS~~-~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL 1292 (1326)
+-|-|. ...|.+|..+.+-+... ...+...+...+-++|-. |-|=|+......|+.+|
T Consensus 466 ---------------LsKWp~~~~c~~aa~~LA~rl~~~--~~l~~af~~Q~lAN~LnA-LsKwp~~~~c~~aA~aL 524 (2316)
T PRK09169 466 ---------------LSKWPDEAACRRAAEALAARLAGD--AELRQALDAQGLANALNA-LSKWPDSDACRAAAEAL 524 (2316)
T ss_pred ---------------HhcCCchHHHHHHHHHHHHHHhcC--hhhhhhcChHHHHHHHHH-HhcCCccHHHHHHHHHH
Confidence 223333 23677777777766442 233334455666666666 66668777777777766
Done!