Query 000730
Match_columns 1326
No_of_seqs 245 out of 384
Neff 6.9
Searched_HMMs 29240
Date Tue Mar 26 16:23:35 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000730.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_502-505//hhsearch_pdb/000730hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fdd_A Transportin-1; heat rep 1.0 1 1 153.1 48.8 107 1028-1135 631-742 (852)
2 1b3u_A Protein (protein phosph 1.0 1 1 142.9 43.3 263 984-1296 322-586 (588)
3 4fdd_A Transportin-1; heat rep 1.0 1 1 139.5 51.6 142 1037-1181 597-743 (852)
4 2bpt_A Importin beta-1 subunit 1.0 1 1 138.1 55.9 214 968-1181 621-858 (861)
5 1u6g_C TIP120 protein, CAND1; 1.0 1 1 134.6 57.4 940 15-1180 47-1035(1230)
6 2bpt_A Importin beta-1 subunit 1.0 1 1 134.4 46.1 263 1002-1297 572-857 (861)
7 1u6g_C TIP120 protein, CAND1; 1.0 1 1 133.9 71.7 893 202-1311 127-1108(1230)
8 1qgr_A Protein (importin beta 1.0 1 1 128.2 41.4 231 1041-1299 623-873 (876)
9 1b3u_A Protein (protein phosph 1.0 1 1 125.9 34.6 267 985-1299 280-550 (588)
10 1qgr_A Protein (importin beta 1.0 1 1 119.6 59.9 213 965-1180 628-871 (876)
No 1
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=1.00 E-value=1 Score=153.07 Aligned_cols=107 Identities=15% Similarity=0.136 Sum_probs=46.1
Q ss_pred HHHHHHHCCCCCHHHHHHHHHHCCCCCCH---HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHH
Q ss_conf 99998530899935899985201577511---244328779999994204788368999999999985128968750257
Q 000730 1028 VEALCRHVSDESPTVRGLCLRGLVQIPSI---HIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPIL 1104 (1326)
Q Consensus 1028 i~~L~~~l~D~~~~VR~lalrGLgnl~~~---kv~~~~~~lL~all~gL~d~~~~V~leAm~~L~~iL~~l~~~~~~~~~ 1104 (1326)
+..+...+.|+++.||.-+..-+|.++.. +..+|.+.+++.++..+++.+..+...|..+++.+....+. .+.++.
T Consensus 631 ~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~l~~~lp~l~~~l~~~~~~v~~~a~~alg~i~~~~~~-~~~p~~ 709 (852)
T 4fdd_A 631 LTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMGI-EMQPYI 709 (852)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHGG-GGGGGT
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHH
T ss_conf 9999998389984499999999999999816888987999999999876942068999999999999997117-678789
Q ss_pred HHHHHHHCCCCCCC--CHHHHHHHHHHHHHHHH
Q ss_conf 86785312867679--95789999999998530
Q 000730 1105 LNLSVRLRNLQVSM--NVKMRRNAFAAFGALSN 1135 (1326)
Q Consensus 1105 ~~i~~~lrpffede--~~~vR~aAi~LfG~L~~ 1135 (1326)
..+...+-+.+++. +..+|..|+.++|.|+.
T Consensus 710 ~~il~~L~~~l~~~~~~~~~~~~a~~~igrl~~ 742 (852)
T 4fdd_A 710 PMVLHQLVEIINRPNTPKTLLENTAITIGRLGY 742 (852)
T ss_dssp HHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 999999999857998872077889999999998
No 2
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=1.00 E-value=1 Score=142.90 Aligned_cols=263 Identities=17% Similarity=0.157 Sum_probs=140.1
Q ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCH-HHHHHH
Q ss_conf 7999999944211456565089999999851067861108999999998530899935899985201577511-244328
Q 000730 984 VQTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI-HIHQYA 1062 (1326)
Q Consensus 984 ~~~i~~~L~~~L~s~~~~~Ri~a~aflsELl~~~~~~~~l~~~~i~~L~~~l~D~~~~VR~lalrGLgnl~~~-kv~~~~ 1062 (1326)
.+.++..+...+++++...|.+++..+.++...... ....+.++..+...++|+++.||..++.+|+.+... ....+.
T Consensus 322 ~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~-~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~ 400 (588)
T 1b3u_A 322 MSQILPCIKELVSDANQHVKSALASVIMGLSPILGK-DNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLS 400 (588)
T ss_dssp HHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCH-HHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHH
T ss_conf 999999999986199889999999999999888627-6788889999999837983689999999899999754989898
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCH
Q ss_conf 77999999420478836899999999998512896875025786785312867679957899999999985301788615
Q 000730 1063 TQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQR 1142 (1326)
Q Consensus 1063 ~~lL~all~gL~d~~~~V~leAm~~L~~iL~~l~~~~~~~~~~~i~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~ 1142 (1326)
+.+++.+...+.|.+..|+..++..++.+...++...+.+.+... +..++.|.+..||.+|+..+|.+....+.
T Consensus 401 ~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~---l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~--- 474 (588)
T 1b3u_A 401 QSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSL---CMAWLVDHVYAIREAATSNLKKLVEKFGK--- 474 (588)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGGCCHHHHHH---HHHGGGCSSHHHHHHHHHHHHHHHHHHCH---
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHH---HHHHHCCCCHHHHHHHHHHHHHHHHHHCC---
T ss_conf 888999999835998139999999999999880989899999999---99882598199999999999999999684---
Q ss_pred HHHHHHHHHHHHHHHH-HCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCH
Q ss_conf 8799999955667987-315899469999999999430213345664320356777888985899999999999959421
Q 000730 1143 EAFLEQIHAMLPRLIL-HIYDDDLSVRQACRNTLKQVAPFMEIGVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSR 1221 (1326)
Q Consensus 1143 ~~~~eQv~~~LvpLLl-HL~D~~~~V~~ack~tL~~~a~~L~~~l~~l~~~~~~~~~~~l~~~~f~~~l~~~L~~~~~~~ 1221 (1326)
+++ ...++|.+. .++|++..|+.++-.++..++..++- . ..
T Consensus 475 ~~~----~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~--------------------------------~--~~ 516 (588)
T 1b3u_A 475 EWA----HATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQ--------------------------------D--IT 516 (588)
T ss_dssp HHH----HHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHH--------------------------------H--HH
T ss_pred HHH----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCH--------------------------------H--HH
T ss_conf 457----888999999983189879999999999999976698--------------------------------9--99
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf 999999998752099936879999999653014813554100699999999998542998037889999999999
Q 000730 1222 IDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLL 1296 (1326)
Q Consensus 1222 ~~~~l~~~l~y~kS~~~~IR~aAa~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~ 1296 (1326)
...++...+..++++.+.+|.+|+..+|.+....+.+.. .+.+...|.. +..|+|+.||..|.+|++.+.
T Consensus 517 ~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~----~~~~~p~l~~-l~~d~d~~vr~~a~~al~~l~ 586 (588)
T 1b3u_A 517 TKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTL----QSEVKPILEK-LTQDQDVDVKYFAQEALTVLS 586 (588)
T ss_dssp HHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHHHH----HHHHHHHHHH-HTTCSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCHHHH----HHHHHHHHHH-HCCCCCHHHHHHHHHHHHHHH
T ss_conf 999999998667899862799999999999998653645----9999999998-747996669999999999763
No 3
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=1.00 E-value=1 Score=139.46 Aligned_cols=142 Identities=14% Similarity=0.122 Sum_probs=101.0
Q ss_pred CCCHHHHHHHHHHCCCCCCH---HHHHHH--HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
Q ss_conf 99935899985201577511---244328--7799999942047883689999999999851289687502578678531
Q 000730 1037 DESPTVRGLCLRGLVQIPSI---HIHQYA--TQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRL 1111 (1326)
Q Consensus 1037 D~~~~VR~lalrGLgnl~~~---kv~~~~--~~lL~all~gL~d~~~~V~leAm~~L~~iL~~l~~~~~~~~~~~i~~~l 1111 (1326)
.++..+|.-+++.+|.++.. +...|. +.+++.++..+.|.+..|+..+...++.+....+ ..+.+++..+..-+
T Consensus 597 ~~d~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~-~~~~~~l~~~lp~l 675 (852)
T 4fdd_A 597 APDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACF-QHVKPCIADFMPIL 675 (852)
T ss_dssp CCCTHHHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCG-GGTGGGHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
T ss_conf 87611999999999789998747699883677189999998389984499999999999999816-88898799999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCHH
Q ss_conf 2867679957899999999985301788615879999995566798731589946999999999943021
Q 000730 1112 RNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPF 1181 (1326)
Q Consensus 1112 rpffede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~~ 1181 (1326)
...++++..++|..|+...|+++...+ ..-.++.+.+...+++++-+ .+....|...+..|+++.+..
T Consensus 676 ~~~l~~~~~~v~~~a~~alg~i~~~~~-~~~~p~~~~il~~L~~~l~~-~~~~~~~~~~a~~~igrl~~~ 743 (852)
T 4fdd_A 676 GTNLNPEFISVCNNATWAIGEISIQMG-IEMQPYIPMVLHQLVEIINR-PNTPKTLLENTAITIGRLGYV 743 (852)
T ss_dssp HHTCCTTSHHHHHHHHHHHHHHHHHHG-GGGGGGTHHHHHHHHHHHTC-SSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHCC-CCCCCHHHHHHHHHHHHHHHH
T ss_conf 987694206899999999999999711-76787899999999998579-988720778899999999986
No 4
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=1.00 E-value=1 Score=138.11 Aligned_cols=214 Identities=13% Similarity=0.098 Sum_probs=112.0
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHCCCCC--HHHHH
Q ss_conf 9999998875109521799999994421145656508999999985106786-11089999999985308999--35899
Q 000730 968 LIGDVAGCVSIKRPKEVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGG-FDSLLEQMVEALCRHVSDES--PTVRG 1044 (1326)
Q Consensus 968 gV~~LAr~l~~~~~~~~~~i~~~L~~~L~s~~~~~Ri~a~aflsELl~~~~~-~~~l~~~~i~~L~~~l~D~~--~~VR~ 1044 (1326)
.++.++.++-..-.++++.++..+...+++.+...|..++..++.+...... .......++..+.+.+.|++ +.+|.
T Consensus 621 ~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~ 700 (861)
T 2bpt_A 621 AISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKP 700 (861)
T ss_dssp HHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGGGHHHHHHHHHHHHHHHHCTTCCTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCHHCCCHHHHHHHHHHHHHCCCCCCHHHHH
T ss_conf 99999999766099999999999998865566789999999999999874540311199999999997278655676659
Q ss_pred HHHHHCCCCCCH---HHHHHHHHHHHHHHHHCCCCC-----------HHHHHHHHHHHHHHHCCCCC--CCCCHHHHHHH
Q ss_conf 985201577511---244328779999994204788-----------36899999999998512896--87502578678
Q 000730 1045 LCLRGLVQIPSI---HIHQYATQVLSVILALLDDLD-----------ESVQLTAVSCLLTILKSSSK--DAVEPILLNLS 1108 (1326)
Q Consensus 1045 lalrGLgnl~~~---kv~~~~~~lL~all~gL~d~~-----------~~V~leAm~~L~~iL~~l~~--~~~~~~~~~i~ 1108 (1326)
.++.++|.++.. ....|.+.+++.++..+.... ..++..++.+++.++..++. ..+.++...+.
T Consensus 701 ~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~d~d~~~~~~~vr~~~l~~~~~i~~~l~~~~~~~~~~~~~i~ 780 (861)
T 2bpt_A 701 AVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLHDKPEALFPYVGTIF 780 (861)
T ss_dssp HHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHGGGHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 99999999999840508999999999999997367899975889999999999999999999998267788999999999
Q ss_pred HHHCCCCCCC----CHHHHHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCHH
Q ss_conf 5312867679----95789999999998530178861587999-9995566798731589946999999999943021
Q 000730 1109 VRLRNLQVSM----NVKMRRNAFAAFGALSNFGVGSQREAFLE-QIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPF 1181 (1326)
Q Consensus 1109 ~~lrpffede----~~~vR~aAi~LfG~L~~~~~~~~~~~~~e-Qv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~~ 1181 (1326)
..+.....|. ++.+|.+|+.++|+++...+|..-..|.. ++...++..+-+.++.+..|+..|+++++.++..
T Consensus 781 ~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~~~~~g~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~wa~~~~~~~ 858 (861)
T 2bpt_A 781 QFIAQVAEDPQLYSEDATSRAAVGLIGDIAAMFPDGSIKQFYGQDWVIDYIKRTRSGQLFSQATKDTARWAREQQKRQ 858 (861)
T ss_dssp HHHHHHHHCHHHHTSHHHHHHHHHHHHHHHHHCTTSTTGGGTTCHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 999998748555786999999999999999882882488987267999999988535578877899999999999987
No 5
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=1.00 E-value=1 Score=134.59 Aligned_cols=940 Identities=14% Similarity=0.120 Sum_probs=415.0
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 77999997752001579999999999998612542267565301022002333563111234444557888905799998
Q 000730 15 PLLLEAVKSLLDEQNLAVQKAISELIVVMASHCYLIGPSGELFVEYLVRHCALSDQKKYVNESSKVKIGAFCPTELRAIC 94 (1326)
Q Consensus 15 ~~i~~~vk~~l~d~~~kVr~al~~~I~ama~~~yl~~~~g~~~i~fiv~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~ 94 (1326)
..++..+-..+.|++.+||.+-+..+..++.+.. ...+++++..+.-. .. + +...+|..+
T Consensus 47 ~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~------~~~~~~i~~~Ll~~---l~-------d----~~~~vR~~a 106 (1230)
T 1u6g_C 47 RKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVK------EYQVETIVDTLCTN---ML-------S----DKEQLRDIS 106 (1230)
T ss_dssp HHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSC------HHHHHHHHHHHHHH---TT-------C----SSSHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCC------HHHHHHHHHHHHHH---HC-------C----CCHHHHHHH
T ss_conf 9999999998669998999999999999997587------98999999999998---66-------9----838899999
Q ss_pred HHHHHHHHCCCHHH------HHHHHHHHHHHCCCC----CCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 86788872140134------471589876210673----67421244889999999741368986434445778999879
Q 000730 95 EKGLLLLTITIPEM------QHILWPLLLKMIIPR----AYTSAAATVCRCISELCRHRSSSSNVMLSECKARDDIPNPE 164 (1326)
Q Consensus 95 ~~~L~lltttv~~m------~~~LWP~LL~~i~p~----~yT~al~~ick~l~~La~k~~~~~~~~~~~~~~~~~lPsp~ 164 (1326)
.++|..+....+.- ..-.||.++.++... +-...-...+.++..++... ++.. .|.-.
T Consensus 107 ~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~---~~~l---------~~~~~ 174 (1230)
T 1u6g_C 107 SIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQ---GGLL---------VNFHP 174 (1230)
T ss_dssp HHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHT---CSSC---------TTTHH
T ss_pred HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH---HHHH---------HHHHH
T ss_conf 99999999967974444411788999999999998757884679999999999999982---7677---------88799
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 99999999825974540459999999987088899401334775188787200257767789514742999999999983
Q 000730 165 ELFARLVVLLHDPLAREQQATQILMVLYYLSPLFPTNIDLFWQDEIPKMKAYVSDTEDLKLDPSYQETWDDMIINFLAES 244 (1326)
Q Consensus 165 ~llaRllvl~~~P~~~~~rg~~~L~lL~~l~~~ih~~l~~~W~~~Ip~L~~~L~~~~~~~~~~~~~~~We~~Ll~fL~~s 244 (1326)
.++..++-.+.+|... --..++..+..+........ .+..+|.|+++|....+ ......--+.+-.+....
T Consensus 175 ~ll~~l~~~L~~~~~~--vR~~a~~al~~l~~~~~~~~---~~~~l~~l~~~L~~~~~----~~~r~~a~~~l~~l~~~~ 245 (1230)
T 1u6g_C 175 SILTCLLPQLTSPRLA--VRKRTIIALGHLVMSCGNIV---FVDLIEHLLSELSKNDS----MSTTRTYIQCIAAISRQA 245 (1230)
T ss_dssp HHHHHHGGGGGCSSHH--HHHHHHHHHHHHTTTC-------CTTHHHHHHHHHHHTCS----SCSCTTHHHHHHHHHHHS
T ss_pred HHHHHHHHHHCCCCHH--HHHHHHHHHHHHHHHCCHHH---HHHHHHHHHHHHCCCCC----HHHHHHHHHHHHHHHHHH
T ss_conf 9999999987599689--99999999999998568999---99999999998616775----568999999999999986
Q ss_pred HHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCH--HHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf 401156708999999998422028999366779999999998712895--589999999988316688721146999999
Q 000730 245 LDVVQETDWLISLGNAFTEQYVLYTPDDDHSALLHRCLGILLQKVADR--NYVCDKIDWMYKQANIAIPTNRLGLAKAMG 322 (1326)
Q Consensus 245 l~~i~d~~W~~~L~~el~~q~~~y~~~~~eK~fL~k~lG~~L~~~~~~--~~V~~~L~~ll~~~~~~~~~ereG~A~~~G 322 (1326)
=+.+. .+...+...+.+.+. .+++.-+..-+.++|.....+... .++..-+..++....+.... . ..
T Consensus 246 ~~~~~--~~l~~l~~~ll~~l~--d~~~~vR~~a~~~l~~l~~~~~~~~~~~l~~li~~ll~~l~~d~~~-----~--~~ 314 (1230)
T 1u6g_C 246 GHRIG--EYLEKIIPLVVKFCN--VDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNY-----N--YD 314 (1230)
T ss_dssp SGGGT--TSCTTHHHHHHHHHS--SCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC-------------
T ss_pred HHHHH--HHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCC-----C--CC
T ss_conf 89899--889999999999866--8977899999999999999784877776899999999982789988-----8--76
Q ss_pred HHHHHCHHHHHHHHHH--HHHHHCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf 9962168999999999--88510122210011102565332005879999999899998309905699999776676779
Q 000730 323 LVAASHLDAVLEMLKG--ILDNIGQSLFQRLLSFFSNSYRMEESDDIHAALALMYGYAAKYAPSTVIEARIDALVGTNML 400 (1326)
Q Consensus 323 ~~A~~Hld~VL~~L~~--~~~~~~~~~~~~~l~~~k~~~~~~e~~~~ks~l~l~YG~va~~ap~~~il~~ve~~I~~~i~ 400 (1326)
-. +...+..++ ..... .... ..+.+. +.....+|.+.+.+.+.++...| +.+.+.++. ++..+.
T Consensus 315 ~d-----~~~~~~~~~~~~~~~~--~~~~---~~~~~~--~d~~~~vR~~A~~~l~~l~~~~~-~~~~~~~~~-l~~~l~ 380 (1230)
T 1u6g_C 315 DE-----DEDENAMDADGGDDDD--QGSD---DEYSDD--DDMSWKVRRAAAKCLDAVVSTRH-EMLPEFYKT-VSPALI 380 (1230)
T ss_dssp ------------------------------------------CTTHHHHHHHHHHHHHHTTCC-TTHHHHHTT-THHHHH
T ss_pred CC-----CCCCCCCCCCCCCCCH--HHCC---CCCCCC--CCCCHHHHHHHHHHHHHHHHHCH-HHHHHHHHH-HHHHHH
T ss_conf 44-----1101122334465301--1001---366645--55677999999999999997466-679999999-989999
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH-CCCCCCCCC-----------HHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 7651037546899999999999999763220-699768877-----------7999999999844688987788245667
Q 000730 401 SRLLHVRHHTAKQAVITAIDLLGRAVINAAE-NGASFPLKK-----------RDQLLDYILTLMGREENDSFADSSIELL 468 (1326)
Q Consensus 401 ~~~~~~kd~~~K~s~l~si~~i~~ai~~~~~-~~~~f~f~~-----------k~eLl~~l~~~i~~ep~~~l~s~~~~l~ 468 (1326)
.++ ...+..++.+.++++..+.+++..... ......+++ -++++..+...++.+. -
T Consensus 381 ~~l-~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~-----------~ 448 (1230)
T 1u6g_C 381 SRF-KEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKS-----------V 448 (1230)
T ss_dssp STT-SCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSC-----------H
T ss_pred HHC-CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC-----------H
T ss_conf 871-7986579999999999999972424343467520135645599999874699999999861377-----------8
Q ss_pred HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf 69999998841013247887846799998773513226899922179999999999999960158887663999999999
Q 000730 469 HTQALALSACTTLVTVEPKLTIETRNHVMKATLGFFALPNDPIDVVNPLIDNLITLLCAILLTSGEDGRSRADQLLHILR 548 (1326)
Q Consensus 469 ~~r~~al~a~t~L~~L~P~l~~e~~~~ll~~c~~~~~lp~~~~~l~~~~~~al~~lL~~ll~~~~~d~~~~~~~L~~~l~ 548 (1326)
++|+-++.++..+++.-|..-...-..++..++..+.-+.........+..++. .++...+. ......+..++.
T Consensus 449 ~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~----~~~~~~~~--~~~~~~l~~llp 522 (1230)
T 1u6g_C 449 KTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLY----VILCNHSP--QVFHPHVQALVP 522 (1230)
T ss_dssp HHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHH----HHHHSSCG--GGGHHHHTTTHH
T ss_pred HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH----HHHHHCCH--HHHHHHHHHHHH
T ss_conf 799999999999999761105777999999999997487885168999999999----99983898--878867999999
Q ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 77788519358876579999999999988322013445788887651234444210357789976567712333445688
Q 000730 549 QIDQYVSSPVEYQRRRSCLAVYEMLLKFRTLCVIGYCALGCHGSCTHIKQIDRAVLGNFSNLPSAYVLPSREALCLGNRV 628 (1326)
Q Consensus 549 ~l~pw~~S~~~~eR~ra~~~~~~lL~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~ps~f~~~~~~~~~lG~Lv 628 (1326)
.+..++......-|..|+.++..+.+.+... ....+..| .+-+..++
T Consensus 523 ~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~---------------------------~~~~~~~~------~~~~~~ll 569 (1230)
T 1u6g_C 523 PVVACVGDPFYKITSEALLVTQQLVKVIRPL---------------------------DQPSSFDA------TPYIKDLF 569 (1230)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHHHHHCCS---------------------------SSCCCCCC------HHHHHHHH
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHCCC---------------------------CCCCCCCH------HHHHHHHH
T ss_conf 9999971424689999999999999871675---------------------------55653232------78999999
Q ss_pred HHHHCCC--CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 9852465--68993599989999999999883099998898886212225552200799997404999990589999999
Q 000730 629 IMYLPRC--ADTDSEVRKISAQILDQLFSISLSLPRPVGSSSGIDLELSYGALSSLEDVIAILRSDASIDPSEVFNRIVS 706 (1326)
Q Consensus 629 g~l~prC--~D~~~~iR~~A~~~i~~Ll~I~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~~~i~~ 706 (1326)
..+...+ .|+++++|..|+.++..+..-... ... . .. ...+..+. +.+.. ........+...
T Consensus 570 ~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g~-----~~~-~---~~-~~~l~~L~---~~l~~---e~~r~~~~~al~ 633 (1230)
T 1u6g_C 570 TCTIKRLKAADIDQEVKERAISCMGQIICNLGD-----NLG-S---DL-PNTLQIFL---ERLKN---EITRLTTVKALT 633 (1230)
T ss_dssp HHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGG-----GCC-T---HH-HHHHHHHH---HHTTS---SSHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCC-----HHH-H---HH-HHHHHHHH---HHHCC---CHHHHHHHHHHH
T ss_conf 999998732699889999999999999998270-----324-4---38-89999999---88445---305999999999
Q ss_pred HHHCCC----CHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH-HH--CCCHHHH
Q ss_conf 997009----9568999999999832589901289999999999851036544010635999999987-31--1708899
Q 000730 707 SVCILL----TKDELVATLHSCTTAICDRTKQSAEGAIQAVVEFVTKRGNELSETDVSRTTQSLLSAA-VH--ITDKHLR 779 (1326)
Q Consensus 707 ~i~~~L----~~~el~~li~~ll~~L~d~~~~~~~aA~~~L~~~l~~rG~~L~e~~V~~i~~~I~~~l-~~--i~~~~~r 779 (1326)
.++... ...-+...+-.+...+.+.+......|+..+..+++..+..+.. ..+.. +...+ +. ..+.+..
T Consensus 634 ~i~~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~r~~a~~al~~l~~~~~~~~~~---~~v~~-~l~~ll~ll~~~D~~~~ 709 (1230)
T 1u6g_C 634 LIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTA---AMIDA-VLDELPPLISESDMHVS 709 (1230)
T ss_dssp HHTTCSSCCCCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHCCTTCCH---HHHHH-HHTTCGGGSCTTCHHHH
T ss_pred HHHHCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCH---HHHHH-HHHHHHHHCCCCHHHHH
T ss_conf 998185644368889999999999998678889999999999999604333898---99999-99998763575418789
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 99999999974105733589999842145410100000159988215899830081208999999999970599856777
Q 000730 780 LETLGAISCLAENTNSKIVFNEVLATAGKDIVTKDISRLRGGWPMQDAFHAFSQHAVLSFLFLEHLISALNQTPFVKGDM 859 (1326)
Q Consensus 780 ~~~l~ai~~La~~h~~~VV~~~Ll~~~~~~~~~~~~~~L~~~lP~d~~W~al~~d~~l~~~vL~~LL~~L~~~p~~~~~~ 859 (1326)
..++.++..+.+..+..+. . ....++..++..+.....
T Consensus 710 ~~~~~~L~~l~~~~~~~~~-~------------------------------------~~~~~l~~~~~~l~~~~~----- 747 (1230)
T 1u6g_C 710 QMAISFLTTLAKVYPSSLS-K------------------------------------ISGSILNELIGLVRSPLL----- 747 (1230)
T ss_dssp HHHHHHHHHHTTSCGGGGG-G------------------------------------TTTTTHHHHHHHHTCTTC-----
T ss_pred HHHHHHHHHHHHHCCHHHH-H------------------------------------HHHHHHHHHHHHHCCCCC-----
T ss_conf 9999999999884912677-7------------------------------------677689999999758621-----
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC-HHH-HHHHHH
Q ss_conf 668888888888755247999999999987148821188899852799999999866204689889987-479-999999
Q 000730 860 EKGDYSSHSADTWIDDDILQAAILALTAFFRGGGKVGKKAVEKSYAPVLAALTLQLGSCHGLASSGQHE-PLR-AILTSF 937 (1326)
Q Consensus 860 ~~~~~~~~~~~~~~~~~~~laA~~aL~Ell~~~~~~~~~av~~~fp~Ll~aLL~ql~~~~~~~~~~~~~-P~~-~aleal 937 (1326)
....+.+...+...+...+.. ...|+.++-.|+..+.. ..++... ..+ .+-.++
T Consensus 748 ---------------~~~~~~~l~~~~~~l~~~~~~-----~~~~~~ll~~l~~~~~~----~~~~~~~~~~~~~~a~~i 803 (1230)
T 1u6g_C 748 ---------------QGGALSAMLDFFQALVVTGTN-----NLGYMDLLRMLTGPVYS----QSTALTHKQSYYSIAKCV 803 (1230)
T ss_dssp ---------------CHHHHHHHHHHHHHHHTTCCT-----TCSHHHHHHHHSTTTTT----C----CCHHHHHHHHHHH
T ss_pred ---------------CHHHHHHHHHHHHHHHHCCCC-----CCCHHHHHHHHHCCCCC----CCCCCCCCHHHHHHHHHH
T ss_conf ---------------057899999999999834788-----78899999998500357----887320001048999999
Q ss_pred HHHHHHHCCHHHHHHHHHC-CCCCC---HHHH----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHH
Q ss_conf 9999861566899999751-99987---5549----99999999887510952179999999442114565650899999
Q 000730 938 QAFCECVGDLEMRKILARD-GEQND---KEKW----INLIGDVAGCVSIKRPKEVQTICLILTKSINRQQRFQREAAAAA 1009 (1326)
Q Consensus 938 k~ll~~~g~~~~~~~L~~~-~~W~~---~~~~----~~gV~~LAr~l~~~~~~~~~~i~~~L~~~L~s~~~~~Ri~a~af 1009 (1326)
-.++...|.... ..++.- ..-.+ .+.- ..+++.+++.. .. .+ .+.+...+.+.++++.+..|..|...
T Consensus 804 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~-~~-~~-~~~l~~~~~~~l~~~~~~Vr~aAa~a 879 (1230)
T 1u6g_C 804 AALTRACPKEGP-AVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHHI-DL-SG-QLELKSVILEAFSSPSEEVKSAASYA 879 (1230)
T ss_dssp HHHHHHSCCCSH-HHHTTTTTTTTTTTCCHHHHHHHHHHHHHHHHHS-CC-CS-CTHHHHHHHHGGGCSCHHHHHHHHHH
T ss_pred HHHHHHCCHHHH-HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCC-CC-CC-CCCHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 999984656668-9999999983788766799999999999861567-87-65-64189999998479977899999999
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 9985106786110899999999853089993589998520157751----124432877999999420478836899999
Q 000730 1010 LSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPS----IHIHQYATQVLSVILALLDDLDESVQLTAV 1085 (1326)
Q Consensus 1010 lsELl~~~~~~~~l~~~~i~~L~~~l~D~~~~VR~lalrGLgnl~~----~kv~~~~~~lL~all~gL~d~~~~V~leAm 1085 (1326)
+..+.... ++..+..+.+.+.+. +.+|...+++|..+.. .....+.+++++.++..+.+.++.+...+.
T Consensus 880 Lg~l~~~~------~~~~lp~ll~~l~~~-~~~~~~~l~al~e~i~~~~~~~~~~~~~~i~~~L~~~~~~~~~~~r~~~a 952 (1230)
T 1u6g_C 880 LGSISVGN------LPEYLPFVLQEITSQ-PKRQYLLLHSLKEIISSASVVGLKPYVENIWALLLKHCECAEEGTRNVVA 952 (1230)
T ss_dssp HHHHHHHT------HHHHHHHHHHHHHSC-GGGHHHHHHHHHHHHHSSCSTTTHHHHHHHHHHHTTCCCCSSTTHHHHHH
T ss_pred HHHHHCCC------HHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 68775269------998899999987266-03249889999999823876667766999999999873383044689999
Q ss_pred HHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCH
Q ss_conf 99999851289687502578678531286767995789999999998530178861587999999556679873158994
Q 000730 1086 SCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDL 1165 (1326)
Q Consensus 1086 ~~L~~iL~~l~~~~~~~~~~~i~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~LvpLLlHL~D~~~ 1165 (1326)
.+|+++..... .. +..++..++.+.++.+|..++..++.+...... .+...+...+.+++.+|+|+++
T Consensus 953 ~~lg~l~~~~~----~~----l~p~l~~~l~~~~~~~R~~~~~~l~~~~~~~~~----~~~~~l~~~~~~ll~~l~d~~~ 1020 (1230)
T 1u6g_C 953 ECLGKLTLIDP----ET----LLPRLKGYLISGSSYARSSVVTAVKFTISDHPQ----PIDPLLKNCIGDFLKTLEDPDL 1020 (1230)
T ss_dssp HHHHHHHHSSG----GG----THHHHTTTSSSSCHHHHHHHHHHTGGGCCSSCC----THHHHHHHHSTTTHHHHSSSST
T ss_pred HHHHHHHCCCH----HH----HHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHHHHHCCCCCH
T ss_conf 88756650676----88----889999985699788999999999999706823----3589899989999986489858
Q ss_pred HHHHHHHHHHHHHCH
Q ss_conf 699999999994302
Q 000730 1166 SVRQACRNTLKQVAP 1180 (1326)
Q Consensus 1166 ~V~~ack~tL~~~a~ 1180 (1326)
+|++++-.+|..++.
T Consensus 1021 ~vr~~a~~~l~~~~~ 1035 (1230)
T 1u6g_C 1021 NVRRVALVTFNSAAH 1035 (1230)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 799999999999984
No 6
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=1.00 E-value=1 Score=134.36 Aligned_cols=263 Identities=12% Similarity=0.090 Sum_probs=164.7
Q ss_pred CHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHCCCCCH-HHHHHHHHHCCCCCCH---HHHHHHHHHHHHHHHHCCCC
Q ss_conf 508999999985106786-110899999999853089993-5899985201577511---24432877999999420478
Q 000730 1002 QREAAAAALSEFVRYSGG-FDSLLEQMVEALCRHVSDESP-TVRGLCLRGLVQIPSI---HIHQYATQVLSVILALLDDL 1076 (1326)
Q Consensus 1002 ~Ri~a~aflsELl~~~~~-~~~l~~~~i~~L~~~l~D~~~-~VR~lalrGLgnl~~~---kv~~~~~~lL~all~gL~d~ 1076 (1326)
.|..++..++.++..... .....+.++..+...+++.++ .||.-++..+++++.. ....|.+.+++.++..+.+.
T Consensus 572 ~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~ 651 (861)
T 2bpt_A 572 LQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQV 651 (861)
T ss_dssp HHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99999999999999855634789999999999997467887579999999999999976609999999999999886556
Q ss_pred CHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCC--HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q ss_conf 8368999999999985128968750257867853128676799--57899999999985301788615879999995566
Q 000730 1077 DESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMN--VKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLP 1154 (1326)
Q Consensus 1077 ~~~V~leAm~~L~~iL~~l~~~~~~~~~~~i~~~lrpffede~--~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~Lv 1154 (1326)
+..++..++..++.+....+. .+.++...+...+...+++++ .++|..++..+|+++...+. .-.++.+++...+.
T Consensus 652 ~~~vr~~a~~~l~~l~~~~~~-~~~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~-~~~~~l~~~l~~l~ 729 (861)
T 2bpt_A 652 DSPVSITAVGFIADISNSLEE-DFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGA-DFIPYLNDIMALCV 729 (861)
T ss_dssp TSHHHHHHHHHHHHHHHHTGG-GGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGG-GGHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHCH-HCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
T ss_conf 678999999999999987454-0311199999999997278655676659999999999998405-08999999999999
Q ss_pred HHHHHCC---CCC-----HHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 7987315---899-----46999999999943021334566432035677788898589999999999995942199999
Q 000730 1155 RLILHIY---DDD-----LSVRQACRNTLKQVAPFMEIGVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYM 1226 (1326)
Q Consensus 1155 pLLlHL~---D~~-----~~V~~ack~tL~~~a~~L~~~l~~l~~~~~~~~~~~l~~~~f~~~l~~~L~~~~~~~~~~~l 1226 (1326)
..+-+-. |++ ..|+.++-.++..++.-++-. ...| ..++..+...+..
T Consensus 730 ~~~~~~~~~~d~d~~~~~~~vr~~~l~~~~~i~~~l~~~-~~~~-------------~~~~~~i~~~l~~---------- 785 (861)
T 2bpt_A 730 AAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLHDK-PEAL-------------FPYVGTIFQFIAQ---------- 785 (861)
T ss_dssp HHHTCCCSSSSHHHHHHHHHHHHHHHHHHHHHHHHTTTC-HHHH-------------GGGHHHHHHHHHH----------
T ss_pred HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC-HHHH-------------HHHHHHHHHHHHH----------
T ss_conf 997367899975889999999999999999999998267-7889-------------9999999999999----------
Q ss_pred HHHHHHHCC---C-CHHHHHHHHHHHHHHHCCC-CHHHHHHCCHH-HHHHHHHHHHC--CCCCHHHHHHHHHHHHHHHH
Q ss_conf 999875209---9-9368799999996530148-13554100699-99999999854--29980378899999999998
Q 000730 1227 GSTIQAFEA---P-WPIIQANAIYFSSSILCLC-DDQHILSLFYT-QVFGLLVVKLS--QSADAIVRATCSSSLGWLLK 1297 (1326)
Q Consensus 1227 ~~~l~y~kS---~-~~~IR~aAa~fiG~l~~~~-~~~~~~~~~~e-~l~~~L~~~Ll--~Dpdp~VR~~Aa~aL~~l~k 1297 (1326)
.+.+ + ...+|.+|+..+|.+...+ +.+..... . .++..|...+. ++.+..|+..|+.|++.+.+
T Consensus 786 -----~~~d~~~~~~~~vr~~a~~~l~~l~~~~~g~~~~~~~--~~~~~~~ll~~l~~~~~~~~~~~~~~~wa~~~~~~ 857 (861)
T 2bpt_A 786 -----VAEDPQLYSEDATSRAAVGLIGDIAAMFPDGSIKQFY--GQDWVIDYIKRTRSGQLFSQATKDTARWAREQQKR 857 (861)
T ss_dssp -----HHHCHHHHTSHHHHHHHHHHHHHHHHHCTTSTTGGGT--TCHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred -----HHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHH--HCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
T ss_conf -----8748555786999999999999999882882488987--26799999998853557887789999999999998
No 7
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=1.00 E-value=1 Score=133.88 Aligned_cols=893 Identities=14% Similarity=0.098 Sum_probs=437.0
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 1334775188787200257767789514742999999999983401156--70899999999842202899936677999
Q 000730 202 IDLFWQDEIPKMKAYVSDTEDLKLDPSYQETWDDMIINFLAESLDVVQE--TDWLISLGNAFTEQYVLYTPDDDHSALLH 279 (1326)
Q Consensus 202 l~~~W~~~Ip~L~~~L~~~~~~~~~~~~~~~We~~Ll~fL~~sl~~i~d--~~W~~~L~~el~~q~~~y~~~~~eK~fL~ 279 (1326)
....|..-+|.|.+.++++.+ + .-.+.-+..+.+.+....+ ......+...+...+. .+.+.-+.--.
T Consensus 127 ~~~~~~~llp~L~~~l~~~~~------~--~~~~~al~~l~~~~~~~~~~l~~~~~~ll~~l~~~L~--~~~~~vR~~a~ 196 (1230)
T 1u6g_C 127 AANVCKKITGRLTSAIAKQED------V--SVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLT--SPRLAVRKRTI 196 (1230)
T ss_dssp HHHHHHHHHHHHHHHHSCCSC------H--HHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGG--CSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCC------H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHH
T ss_conf 788999999999998757884------6--7999999999999998276778879999999999875--99689999999
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCC-CCCCCCHHHHHHHHHHHHHHC-------HHHHHHHHHHHHHHHCCCCCHHH
Q ss_conf 9999998712895589999999988316-688721146999999996216-------89999999998851012221001
Q 000730 280 RCLGILLQKVADRNYVCDKIDWMYKQAN-IAIPTNRLGLAKAMGLVAASH-------LDAVLEMLKGILDNIGQSLFQRL 351 (1326)
Q Consensus 280 k~lG~~L~~~~~~~~V~~~L~~ll~~~~-~~~~~ereG~A~~~G~~A~~H-------ld~VL~~L~~~~~~~~~~~~~~~ 351 (1326)
+++|.+.....+. ++...+..++.... ..+...|.+.+.++|..+... ++.++.. +
T Consensus 197 ~al~~l~~~~~~~-~~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~---------------l 260 (1230)
T 1u6g_C 197 IALGHLVMSCGNI-VFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPL---------------V 260 (1230)
T ss_dssp HHHHHHTTTC-----CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHH---------------H
T ss_pred HHHHHHHHHCCHH-HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------H
T ss_conf 9999999856899-99999999999861677556899999999999998689899889999999---------------9
Q ss_pred HHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 11025653320058799999998999983099056999997766767797651037546899999999999999763220
Q 000730 352 LSFFSNSYRMEESDDIHAALALMYGYAAKYAPSTVIEARIDALVGTNMLSRLLHVRHHTAKQAVITAIDLLGRAVINAAE 431 (1326)
Q Consensus 352 l~~~k~~~~~~e~~~~ks~l~l~YG~va~~ap~~~il~~ve~~I~~~i~~~~~~~kd~~~K~s~l~si~~i~~ai~~~~~ 431 (1326)
+..+.+.. +.+|.+.+.+.|.++..++.+. .+.++. |+..++..+ ..|+... +-..-.. .........
T Consensus 261 l~~l~d~~-----~~vR~~a~~~l~~l~~~~~~~~-~~~l~~-li~~ll~~l--~~d~~~~--~~~d~~~-~~~~~~~~~ 328 (1230)
T 1u6g_C 261 VKFCNVDD-----DELREYCIQAFESFVRRCPKEV-YPHVST-IINICLKYL--TYDPNYN--YDDEDED-ENAMDADGG 328 (1230)
T ss_dssp HHHHSSCC-----TTTHHHHHHHHHHHHHCTTCCC-HHHHHH-HHHHHTTCC--CCC-----------------------
T ss_pred HHHHCCCC-----HHHHHHHHHHHHHHHHHCHHHH-HHHHHH-HHHHHHHHH--CCCCCCC--CCCCCCC-CCCCCCCCC
T ss_conf 99866897-----7899999999999999784877-776899-999999982--7899888--7644110-112233446
Q ss_pred CCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH-HCCCCCCCC
Q ss_conf 6997688777999999999844688987788245667699999988410132478878467999987735-132268999
Q 000730 432 NGASFPLKKRDQLLDYILTLMGREENDSFADSSIELLHTQALALSACTTLVTVEPKLTIETRNHVMKATL-GFFALPNDP 510 (1326)
Q Consensus 432 ~~~~f~f~~k~eLl~~l~~~i~~ep~~~l~s~~~~l~~~r~~al~a~t~L~~L~P~l~~e~~~~ll~~c~-~~~~lp~~~ 510 (1326)
....+.. - -.+. .+. +. .-.+|..|..++..++...|. .-..++...+ .+......+
T Consensus 329 ~~~~~~~------~---~~~~-~~~-d~-------~~~vR~~A~~~l~~l~~~~~~----~~~~~~~~l~~~l~~~l~d~ 386 (1230)
T 1u6g_C 329 DDDDQGS------D---DEYS-DDD-DM-------SWKVRRAAAKCLDAVVSTRHE----MLPEFYKTVSPALISRFKER 386 (1230)
T ss_dssp ---------------------------C-------TTHHHHHHHHHHHHHHTTCCT----THHHHHTTTHHHHHSTTSCS
T ss_pred CCCHHHC------C---CCCC-CCC-CC-------CHHHHHHHHHHHHHHHHHCHH----HHHHHHHHHHHHHHHHCCCC
T ss_conf 5301100------1---3666-455-56-------779999999999999974666----79999999989999871798
Q ss_pred CC-CHHHHHHHHHHHHHHHHHHCCC-CC-------CCCHHHHH----HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 22-1799999999999999601588-87-------66399999----999977788519358876579999999999988
Q 000730 511 ID-VVNPLIDNLITLLCAILLTSGE-DG-------RSRADQLL----HILRQIDQYVSSPVEYQRRRSCLAVYEMLLKFR 577 (1326)
Q Consensus 511 ~~-l~~~~~~al~~lL~~ll~~~~~-d~-------~~~~~~L~----~~l~~l~pw~~S~~~~eR~ra~~~~~~lL~~~~ 577 (1326)
.+ .-...+.++..++..+-...++ ++ +.....+. .+++.+.+.++++....|+.++.....+.....
T Consensus 387 ~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~ 466 (1230)
T 1u6g_C 387 EENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLP 466 (1230)
T ss_dssp SSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCH
T ss_conf 65799999999999999724243434675201356455999998746999999998613778799999999999999761
Q ss_pred HHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCH--HHHHHHHHHHHHHHH
Q ss_conf 322013445788887651234444210357789976567712333445688985246568993--599989999999999
Q 000730 578 TLCVIGYCALGCHGSCTHIKQIDRAVLGNFSNLPSAYVLPSREALCLGNRVIMYLPRCADTDS--EVRKISAQILDQLFS 655 (1326)
Q Consensus 578 ~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~ps~f~~~~~~~~~lG~Lvg~l~prC~D~~~--~iR~~A~~~i~~Ll~ 655 (1326)
. ... ..+..++..+.....|++. .+|..+...+..++.
T Consensus 467 ~------------------------------~l~----------~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~ 506 (1230)
T 1u6g_C 467 G------------------------------ALT----------QHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILC 506 (1230)
T ss_dssp T------------------------------TTG----------GGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHH
T ss_pred H------------------------------HHH----------HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 1------------------------------057----------779999999999974878851689999999999998
Q ss_pred HHHHCCCCCCCCCCCCHHHHHHHHHHC-HHHHHHHCCCCCCCHHHH-------HHHHHHHHHC-------CCCHHHHHHH
Q ss_conf 883099998898886212225552200-799997404999990589-------9999999970-------0995689999
Q 000730 656 ISLSLPRPVGSSSGIDLELSYGALSSL-EDVIAILRSDASIDPSEV-------FNRIVSSVCI-------LLTKDELVAT 720 (1326)
Q Consensus 656 I~l~~~~~~~~~~~~~~~~~~~~l~~l-~~~~~~l~~~~~~~~~~~-------~~~i~~~i~~-------~L~~~el~~l 720 (1326)
-. +. + .. ..-+..+ .-....+ .+ .. ..+ +..+++.++. .+ ..-+..+
T Consensus 507 ~~-------~~--~-~~---~~~l~~llp~L~~~l-~d--~~-~~v~~~al~~l~~l~~~~~~~~~~~~~~~-~~~~~~l 568 (1230)
T 1u6g_C 507 NH-------SP--Q-VF---HPHVQALVPPVVACV-GD--PF-YKITSEALLVTQQLVKVIRPLDQPSSFDA-TPYIKDL 568 (1230)
T ss_dssp SS-------CG--G-GG---HHHHTTTHHHHHHHH-TC--SS-HHHHHHHHHHHHHHHHHHCCSSSCCCCCC-HHHHHHH
T ss_pred HC-------CH--H-HH---HHHHHHHHHHHHHHH-CC--CC-HHHHHHHHHHHHHHHHHHCCCCCCCCCCH-HHHHHHH
T ss_conf 38-------98--8-78---867999999999997-14--24-68999999999999987167555653232-7899999
Q ss_pred HHHHHHHC--CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC----
Q ss_conf 99999832--589901289999999999851036544010635999999987311708899999999999741057----
Q 000730 721 LHSCTTAI--CDRTKQSAEGAIQAVVEFVTKRGNELSETDVSRTTQSLLSAAVHITDKHLRLETLGAISCLAENTN---- 794 (1326)
Q Consensus 721 i~~ll~~L--~d~~~~~~~aA~~~L~~~l~~rG~~L~e~~V~~i~~~I~~~l~~i~~~~~r~~~l~ai~~La~~h~---- 794 (1326)
+..++..+ .|.+.....+|...+..+.+.-|..+.. .++.+++.+...+. .+..|..+.+++..++....
T Consensus 569 l~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g~~~~~-~~~~~l~~L~~~l~---~e~~r~~~~~al~~i~~~~~~~~~ 644 (1230)
T 1u6g_C 569 FTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGS-DLPNTLQIFLERLK---NEITRLTTVKALTLIAGSPLKIDL 644 (1230)
T ss_dssp HHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGGCCT-HHHHHHHHHHHHTT---SSSHHHHHHHHHHHHTTCSSCCCC
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCHHHH-HHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHCCCCCCH
T ss_conf 99999987326998899999999999999982703244-38899999998844---530599999999999818564436
Q ss_pred ----CHHHHHHHHHHHCCCCHHHHHCCCCCCCCCHH-----HHHHHHCCC--CCHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf ----33589999842145410100000159988215-----899830081--2089999999999705998567776688
Q 000730 795 ----SKIVFNEVLATAGKDIVTKDISRLRGGWPMQD-----AFHAFSQHA--VLSFLFLEHLISALNQTPFVKGDMEKGD 863 (1326)
Q Consensus 795 ----~~VV~~~Ll~~~~~~~~~~~~~~L~~~lP~d~-----~W~al~~d~--~l~~~vL~~LL~~L~~~p~~~~~~~~~~ 863 (1326)
..++ ..+... +..+-+--+ .+..+.... .+. .+.+...+....+.-++.
T Consensus 645 ~~~~~~i~-~~L~~~------------l~~~~~~~r~~a~~al~~l~~~~~~~~~---~~~v~~~l~~ll~ll~~~---- 704 (1230)
T 1u6g_C 645 RPVLGEGV-PILASF------------LRKNQRALKLGTLSALDILIKNYSDSLT---AAMIDAVLDELPPLISES---- 704 (1230)
T ss_dssp HHHHHHHH-HHHHHH------------TTSCCHHHHHHHHHHHHHHHHHCCTTCC---HHHHHHHHTTCGGGSCTT----
T ss_pred HHHHHHHH-HHHHHH------------HHHCCHHHHHHHHHHHHHHHHCCCCCCC---HHHHHHHHHHHHHHCCCC----
T ss_conf 88899999-999999------------9867888999999999999960433389---899999999987635754----
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCH--HHHHHHHHHHHH
Q ss_conf 888888887552479999999999871488211888998527999999998662046898899874--799999999999
Q 000730 864 YSSHSADTWIDDDILQAAILALTAFFRGGGKVGKKAVEKSYAPVLAALTLQLGSCHGLASSGQHEP--LRAILTSFQAFC 941 (1326)
Q Consensus 864 ~~~~~~~~~~~~~~~laA~~aL~Ell~~~~~~~~~av~~~fp~Ll~aLL~ql~~~~~~~~~~~~~P--~~~alealk~ll 941 (1326)
+ ......+..+|..+....+ ..+...++.++-.++..+.... +.. ....+..++.+.
T Consensus 705 -------D---~~~~~~~~~~L~~l~~~~~----~~~~~~~~~~l~~~~~~l~~~~-------~~~~~~~~l~~~~~~l~ 763 (1230)
T 1u6g_C 705 -------D---MHVSQMAISFLTTLAKVYP----SSLSKISGSILNELIGLVRSPL-------LQGGALSAMLDFFQALV 763 (1230)
T ss_dssp -------C---HHHHHHHHHHHHHHTTSCG----GGGGGTTTTTHHHHHHHHTCTT-------CCHHHHHHHHHHHHHHH
T ss_pred -------H---HHHHHHHHHHHHHHHHHCC----HHHHHHHHHHHHHHHHHHCCCC-------CCHHHHHHHHHHHHHHH
T ss_conf -------1---8789999999999988491----2677767768999999975862-------10578999999999998
Q ss_pred HHHC-CHHHHHHHHHC-CCCCC-HH--HHHHHHHHHHHHH---HHCCCHHHHHHHHHHHHHHCCC--CCCCHHHHHHHHH
Q ss_conf 8615-66899999751-99987-55--4999999999887---5109521799999994421145--6565089999999
Q 000730 942 ECVG-DLEMRKILARD-GEQND-KE--KWINLIGDVAGCV---SIKRPKEVQTICLILTKSINRQ--QRFQREAAAAALS 1011 (1326)
Q Consensus 942 ~~~g-~~~~~~~L~~~-~~W~~-~~--~~~~gV~~LAr~l---~~~~~~~~~~i~~~L~~~L~s~--~~~~Ri~a~afls 1011 (1326)
.... .......++.- ..|.. .. .+.+....+++++ +...++....++..+...++++ .+..+..+..++.
T Consensus 764 ~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 843 (1230)
T 1u6g_C 764 VTGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKNSRSTDSIRLLALLSLG 843 (1230)
T ss_dssp TTCCTTCSHHHHHHHHSTTTTTC----CCHHHHHHHHHHHHHHHHHSCCCSHHHHTTTTTTTTTTTCCHHHHHHHHHHHH
T ss_pred HCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
T ss_conf 34788788999999985003578873200010489999999999846566689999999983788766799999999999
Q ss_pred HHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf 85106786110899999999853089993589998520157751124432877999999420478836899999999998
Q 000730 1012 EFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSIHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTI 1091 (1326)
Q Consensus 1012 ELl~~~~~~~~l~~~~i~~L~~~l~D~~~~VR~lalrGLgnl~~~kv~~~~~~lL~all~gL~d~~~~V~leAm~~L~~i 1091 (1326)
|+........ . ..+...+...+.|+++.||..+..+||.++.+... ..++.++.++.+. ...+..++.+|+.+
T Consensus 844 ~~g~~~~~~~-~-~~l~~~~~~~l~~~~~~Vr~aAa~aLg~l~~~~~~----~~lp~ll~~l~~~-~~~~~~~l~al~e~ 916 (1230)
T 1u6g_C 844 EVGHHIDLSG-Q-LELKSVILEAFSSPSEEVKSAASYALGSISVGNLP----EYLPFVLQEITSQ-PKRQYLLLHSLKEI 916 (1230)
T ss_dssp HHHHHSCCCS-C-THHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHTHH----HHHHHHHHHHHSC-GGGHHHHHHHHHHH
T ss_pred HHCCCCCCCC-C-CCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHH----HHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_conf 8615678765-6-41899999984799778999999996877526999----8899999987266-03249889999999
Q ss_pred HCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH-HHHHCCCCCHHHHHH
Q ss_conf 5128968750257867853128676799578999999999853017886158799999955667-987315899469999
Q 000730 1092 LKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPR-LILHIYDDDLSVRQA 1170 (1326)
Q Consensus 1092 L~~l~~~~~~~~~~~i~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~Lvp-LLlHL~D~~~~V~~a 1170 (1326)
+...+...+.++...|...+....+++.+.+|..+...+|.+..... ..++| |.-++.|+++.+|..
T Consensus 917 i~~~~~~~~~~~~~~i~~~L~~~~~~~~~~~r~~~a~~lg~l~~~~~------------~~l~p~l~~~l~~~~~~~R~~ 984 (1230)
T 1u6g_C 917 ISSASVVGLKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTLIDP------------ETLLPRLKGYLISGSSYARSS 984 (1230)
T ss_dssp HHSSCSTTTHHHHHHHHHHHTTCCCCSSTTHHHHHHHHHHHHHHSSG------------GGTHHHHTTTSSSSCHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCH------------HHHHHHHHHHHCCCCHHHHHH
T ss_conf 82387666776699999999987338304468999988756650676------------888899999856997889999
Q ss_pred HHHHHHHHCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 99999943021334566432035677788898589999999999995942199999999875209993687999999965
Q 000730 1171 CRNTLKQVAPFMEIGVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSS 1250 (1326)
Q Consensus 1171 ck~tL~~~a~~L~~~l~~l~~~~~~~~~~~l~~~~f~~~l~~~L~~~~~~~~~~~l~~~l~y~kS~~~~IR~aAa~fiG~ 1250 (1326)
|-.+++.+... ..-.++..+ ..++...+..++++...||++|+.-+|.
T Consensus 985 ~~~~l~~~~~~-----------------~~~~~~~~l---------------~~~~~~ll~~l~d~~~~vr~~a~~~l~~ 1032 (1230)
T 1u6g_C 985 VVTAVKFTISD-----------------HPQPIDPLL---------------KNCIGDFLKTLEDPDLNVRRVALVTFNS 1032 (1230)
T ss_dssp HHHHTGGGCCS-----------------SCCTHHHHH---------------HHHSTTTHHHHSSSSTHHHHHHHHHHHH
T ss_pred HHHHHHHHHCC-----------------CCHHHHHHH---------------HHHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 99999999706-----------------823358989---------------9989999986489858799999999999
Q ss_pred HHCCCCHHHHHHCCHHHHHHHHHHHHCCCCC------------------HHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 3014813554100699999999998542998------------------037889999999999871004445566543
Q 000730 1251 ILCLCDDQHILSLFYTQVFGLLVVKLSQSAD------------------AIVRATCSSSLGWLLKSINSHSWRSTRLER 1311 (1326)
Q Consensus 1251 l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpd------------------p~VR~~Aa~aL~~l~k~~~~~~~~~~~~~~ 1311 (1326)
.+++.+...... ...+...|.. ..+.++ -.||..|-++++.+.+++........-+++
T Consensus 1033 ~~~~~~~~~~~~--l~~~lp~l~~-~~~~~~~~~~~v~~gp~k~~vd~~l~~rk~a~~~~~~ll~~~~~~i~~~~~~~~ 1108 (1230)
T 1u6g_C 1033 AAHNKPSLIRDL--LDTVLPHLYN-ETKVRKELIREVEMGPFKHTVDDGLDIRKAAFECMYTLLDSCLDRLDIFEFLNH 1108 (1230)
T ss_dssp HHHHCGGGTGGG--HHHHHHHHHH-TTSCCGGGEEEEEETTEEEEEETHHHHHHHHHHHHHHHHHSSCSSSCHHHHHHH
T ss_pred HHHCCHHHHHHH--HHHHHHHHHH-HHCCCHHHHEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_conf 984285768977--9889899998-830268760133058960236774899999999999999988874789999999
No 8
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=1.00 E-value=1 Score=128.22 Aligned_cols=231 Identities=12% Similarity=0.063 Sum_probs=121.5
Q ss_pred HHHHHHHHHCCCCCCH---HHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCC
Q ss_conf 5899985201577511---24432877999999420478-8368999999999985128968750257867853128676
Q 000730 1041 TVRGLCLRGLVQIPSI---HIHQYATQVLSVILALLDDL-DESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQV 1116 (1326)
Q Consensus 1041 ~VR~lalrGLgnl~~~---kv~~~~~~lL~all~gL~d~-~~~V~leAm~~L~~iL~~l~~~~~~~~~~~i~~~lrpffe 1116 (1326)
.||.-+++.+++++.. +...|.+.+++.+..++.+. +..|+..|+.+++.+....+ ..+.++...+...+...+.
T Consensus 623 ~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~-~~~~~~~~~i~~~l~~~l~ 701 (876)
T 1qgr_A 623 GVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQ-SNIIPFCDEVMQLLLENLG 701 (876)
T ss_dssp HHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHG-GGGHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHC
T ss_conf 850899999999999987609999999999999987586508799999999999999887-8546459999999999748
Q ss_pred C--CCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCC----CH-------HHHHHHHHHHHHHCHHHH
Q ss_conf 7--9957899999999985301788615879999995566798731589----94-------699999999994302133
Q 000730 1117 S--MNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDD----DL-------SVRQACRNTLKQVAPFME 1183 (1326)
Q Consensus 1117 d--e~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~LvpLLlHL~D~----~~-------~V~~ack~tL~~~a~~L~ 1183 (1326)
+ .+.++|..++.++|.++...++.. ..+..++.. .++-.+++. ++ .++.++-.++..+...++
T Consensus 702 ~~~~~~~~~~~~~~~l~~i~~~~g~~~-~~~l~~~~~---~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~i~~~~~ 777 (876)
T 1qgr_A 702 NENVHRSVKPQILSVFGDIALAIGGEF-KKYLEVVLN---TLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLK 777 (876)
T ss_dssp CTTSCGGGHHHHHHHHHHHHHHHGGGG-GGGHHHHHH---HHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHCHHH-HHHHHHHHH---HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 712338763999999999999703527-999999999---9999985558999758899999999999999999999974
Q ss_pred HHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHCCCCH-HHH
Q ss_conf 45664320356777888985899999999999959421999999998752099--936879999999653014813-554
Q 000730 1184 IGVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAP--WPIIQANAIYFSSSILCLCDD-QHI 1260 (1326)
Q Consensus 1184 ~~l~~l~~~~~~~~~~~l~~~~f~~~l~~~L~~~~~~~~~~~l~~~l~y~kS~--~~~IR~aAa~fiG~l~~~~~~-~~~ 1260 (1326)
......+.+. . .+..++..+.. ++. ....++ +..+|.+|+..+|.+....+. +..
T Consensus 778 ~~~~~~~~~~-----~--~~~~~~~~i~~------------~l~---~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~ 835 (876)
T 1qgr_A 778 GDQENVHPDV-----M--LVQPRVEFILS------------FID---HIAGDEDHTDGVVACAAGLIGDLCTAFGKDVLK 835 (876)
T ss_dssp CSSSSCCGGG-----G--GSGGGHHHHHH------------HHH---HHHTCSCCCHHHHHHHHHHHHHHHHHHCTHHHH
T ss_pred CCCCCCCCHH-----H--HHHHHHHHHHH------------HHH---HHHCCCCCCHHHHHHHHHHHHHHHHHHCCHHHH
T ss_conf 5755555438-----8--99999999999------------999---986588888899999999999999882848899
Q ss_pred HHCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf 100699999999998542998037889999999999871
Q 000730 1261 LSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLLKSI 1299 (1326)
Q Consensus 1261 ~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k~~ 1299 (1326)
.......+..-+.. .++|+++.||..|+.|+|.+.+.-
T Consensus 836 ~~~~~~~i~~ll~~-~l~~~~~~~r~~a~~a~~~~~~~~ 873 (876)
T 1qgr_A 836 LVEARPMIHELLTE-GRRSKTNKAKTLARWATKELRKLK 873 (876)
T ss_dssp HHHTSHHHHHHHHH-HHHCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCHHHHHHHHH-HHHCCCHHHHHHHHHHHHHHHHHH
T ss_conf 99704899999998-754688768999999999999753
No 9
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=1.00 E-value=1 Score=125.88 Aligned_cols=267 Identities=15% Similarity=0.141 Sum_probs=189.1
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCH-HHHH
Q ss_conf 999999944211456565089999999851067861---108999999998530899935899985201577511-2443
Q 000730 985 QTICLILTKSINRQQRFQREAAAAALSEFVRYSGGF---DSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI-HIHQ 1060 (1326)
Q Consensus 985 ~~i~~~L~~~L~s~~~~~Ri~a~aflsELl~~~~~~---~~l~~~~i~~L~~~l~D~~~~VR~lalrGLgnl~~~-kv~~ 1060 (1326)
..++..+...+++++...|..|+..+.++....... ....+.++..+...++|+++.||..++..|+.++.. ....
T Consensus 280 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~ 359 (588)
T 1b3u_A 280 TDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDN 359 (588)
T ss_dssp HTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 58999999985899589999999879999997274443657999999999998619988999999999999988862767
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 28779999994204788368999999999985128968750257867853128676799578999999999853017886
Q 000730 1061 YATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGS 1140 (1326)
Q Consensus 1061 ~~~~lL~all~gL~d~~~~V~leAm~~L~~iL~~l~~~~~~~~~~~i~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~ 1140 (1326)
..+.+++.+...+.|.++.|+..++.+|+.+....+.... ...+...+..+++|.+..+|.+++..+|.++...+.
T Consensus 360 ~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~---~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~- 435 (588)
T 1b3u_A 360 TIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQL---SQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGV- 435 (588)
T ss_dssp HHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHHH---HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCG-
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHH---HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCH-
T ss_conf 8888999999983798368999999989999975498989---888899999983599813999999999999988098-
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf 15879999995566798731589946999999999943021334566432035677788898589999999999995942
Q 000730 1141 QREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEIGVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPS 1220 (1326)
Q Consensus 1141 ~~~~~~eQv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~~L~~~l~~l~~~~~~~~~~~l~~~~f~~~l~~~L~~~~~~ 1220 (1326)
+.+.+++ ++.++-.|+|+++.|+.++-.++..++..++.. .+...+
T Consensus 436 --~~~~~~l---~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~-------------------~~~~~l---------- 481 (588)
T 1b3u_A 436 --EFFDEKL---NSLCMAWLVDHVYAIREAATSNLKKLVEKFGKE-------------------WAHATI---------- 481 (588)
T ss_dssp --GGCCHHH---HHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH-------------------HHHHHT----------
T ss_pred --HHHHHHH---HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCH-------------------HHHHHH----------
T ss_conf --9899999---999998825981999999999999999996844-------------------578889----------
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf 1999999998752099936879999999653014813554100699999999998542998037889999999999871
Q 000730 1221 RIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLLKSI 1299 (1326)
Q Consensus 1221 ~~~~~l~~~l~y~kS~~~~IR~aAa~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k~~ 1299 (1326)
+.......+++...+|.+|+..+|.+....+.+. ..+.+...|.. +++|+++.||..|..+++.+.+..
T Consensus 482 -----lp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~----~~~~~~~~l~~-~l~d~~~~Vr~~a~~~l~~l~~~~ 550 (588)
T 1b3u_A 482 -----IPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDI----TTKHMLPTVLR-MAGDPVANVRFNVAKSLQKIGPIL 550 (588)
T ss_dssp -----HHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHH----HHHHTHHHHHH-GGGCSCHHHHHHHHHHHHHHGGGS
T ss_pred -----HHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHH----HHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf -----9999998318987999999999999997669899----99999999986-678998627999999999999986
No 10
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=1.00 E-value=1 Score=119.60 Aligned_cols=213 Identities=10% Similarity=0.047 Sum_probs=121.1
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CCCCHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHCCC--CCH
Q ss_conf 9999999998875109521799999994421145-656508999999985106786-110899999999853089--993
Q 000730 965 WINLIGDVAGCVSIKRPKEVQTICLILTKSINRQ-QRFQREAAAAALSEFVRYSGG-FDSLLEQMVEALCRHVSD--ESP 1040 (1326)
Q Consensus 965 ~~~gV~~LAr~l~~~~~~~~~~i~~~L~~~L~s~-~~~~Ri~a~aflsELl~~~~~-~~~l~~~~i~~L~~~l~D--~~~ 1040 (1326)
....++.++..+-..-.+++..++..+.+.++.. +..-|..|+..++.+...... .....+.++..+.+.+.+ .+.
T Consensus 628 a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~ 707 (876)
T 1qgr_A 628 ALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHR 707 (876)
T ss_dssp HHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCTTSCG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
T ss_conf 99999999999876099999999999999875865087999999999999998878546459999999999748712338
Q ss_pred HHHHHHHHHCCCCCCH---HHHHHHHHHHHHHHHHCCCCC----H-------HHHHHHHHHHHHHHCCCCC---------
Q ss_conf 5899985201577511---244328779999994204788----3-------6899999999998512896---------
Q 000730 1041 TVRGLCLRGLVQIPSI---HIHQYATQVLSVILALLDDLD----E-------SVQLTAVSCLLTILKSSSK--------- 1097 (1326)
Q Consensus 1041 ~VR~lalrGLgnl~~~---kv~~~~~~lL~all~gL~d~~----~-------~V~leAm~~L~~iL~~l~~--------- 1097 (1326)
.+|..++..+|+++.. ....|.+.+++.+..++.+.. + .++..++.++..++..++.
T Consensus 708 ~~~~~~~~~l~~i~~~~g~~~~~~l~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~i~~~~~~~~~~~~~~~ 787 (876)
T 1qgr_A 708 SVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENVHPDV 787 (876)
T ss_dssp GGHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCCGGG
T ss_pred HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHH
T ss_conf 76399999999999970352799999999999999855589997588999999999999999999999745755555438
Q ss_pred CCCCHHHHHHHHHHCCCCCCC--CHHHHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHHHHH-HCCCCCHHHHHHHHH
Q ss_conf 875025786785312867679--957899999999985301788-6158799999955667987-315899469999999
Q 000730 1098 DAVEPILLNLSVRLRNLQVSM--NVKMRRNAFAAFGALSNFGVG-SQREAFLEQIHAMLPRLIL-HIYDDDLSVRQACRN 1173 (1326)
Q Consensus 1098 ~~~~~~~~~i~~~lrpffede--~~~vR~aAi~LfG~L~~~~~~-~~~~~~~eQv~~~LvpLLl-HL~D~~~~V~~ack~ 1173 (1326)
..+.+++..+..-+....+|+ ++.+|.+|+..+|+++...++ .....+.+++ +.+|+- .+.|+++.|++++.+
T Consensus 788 ~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~---i~~ll~~~l~~~~~~~r~~a~~ 864 (876)
T 1qgr_A 788 MLVQPRVEFILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVLKLVEARPM---IHELLTEGRRSKTNKAKTLARW 864 (876)
T ss_dssp GGSGGGHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHCTHHHHHHHTSHH---HHHHHHHHHHCSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHCHH---HHHHHHHHHHCCCHHHHHHHHH
T ss_conf 8999999999999999865888888999999999999998828488999970489---9999998754688768999999
Q ss_pred HHHHHCH
Q ss_conf 9994302
Q 000730 1174 TLKQVAP 1180 (1326)
Q Consensus 1174 tL~~~a~ 1180 (1326)
+++.++.
T Consensus 865 a~~~~~~ 871 (876)
T 1qgr_A 865 ATKELRK 871 (876)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
T ss_conf 9999997
Done!