Your job contains 1 sequence.
>000731
MNNLKLCAEVPLNLELQSKDEILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIK
TAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATEVVGRVEGGVR
FISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPIS
WRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAV
YDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVK
ICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENST
ALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVV
DLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGATL
NEDGLLGFYAQEIELACSEDHVQGLLTCAGWHAKVSTQIPLEGLVIAIAPNNAKKYSAFL
QFHGGKISEYMSRVGLTGGALTHDDASFPSSCPWMNVVSVGTNGPLKPLLFGLDDGGRLH
VSGKIVCNNCSSFSFYSKSAGQAMSHLILATKQNLLFIVDISDILHGELALKYENFTHVG
NRRKEENISYINIWERGAKVIGVLHGDEAAVILQTNRGNLECMYPRKLVLTSIVNALIQG
RFRDALVMVRRHRINFNVIVDHCGWQAFLQSASEFVRQVNNLSYITEFVCAINNENITET
LYKKFQFLSLPCREEFKDLPAKDFKASECNKVSSVLLAIRKALEEKVPESPSRELCILTT
LARSDPPALEEALERIKIIRETELLGSDEPRRMSYPSAEEALKHLLWLADSEAVYEAALG
LYDLNLAAIVALNSQRDPKEFLPYLQELESMPPLLMRYTIDLRLQRFENALKHIVSMGDS
YHADCLNLMKKYAQLFPLGLKLITDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSSLE
KAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCGDV
TNGISLLIDARDWEEALRVAFMHRREDLITKVKHASLECASSLIGEYKEGLEKVGKYLTR
YLAVRQRRLLLVAKLQSEDRSMNDLDDDTVSETSSTFSGMSVYTTGSSTRKSSAASIKST
AASKARESKRQRNRGKIRPGSPGEEMALVDHLKGMSLTVGAKQELKSLVVFLVMLGEVDT
ARKLQDTGETFQLSQMAAIKLAEDTMSIDIINEHAHNMERYVQIVKLESQNSEAFSWRSK
VFLSP
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 000731
(1325 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2173199 - symbol:ABO1 "ABA-OVERLY SENSITIVE 1"... 3842 0. 1
UNIPROTKB|F1SP27 - symbol:IKBKAP "Uncharacterized protein... 502 3.9e-89 4
UNIPROTKB|O95163 - symbol:IKBKAP "Elongator complex prote... 478 2.1e-87 4
MGI|MGI:1914544 - symbol:Ikbkap "inhibitor of kappa light... 492 4.1e-83 4
UNIPROTKB|E1BBQ3 - symbol:LOC505465 "Uncharacterized prot... 426 2.5e-81 4
UNIPROTKB|Q8WND5 - symbol:IKBKAP "Elongator complex prote... 463 1.7e-80 4
RGD|620072 - symbol:Ikbkap "inhibitor of kappa light poly... 469 7.0e-79 4
DICTYBASE|DDB_G0284075 - symbol:elp1 "elongation protein ... 588 5.7e-73 2
UNIPROTKB|F5H2T0 - symbol:IKBKAP "Elongator complex prote... 478 2.2e-64 3
SGD|S000004376 - symbol:IKI3 "Subunit of Elongator comple... 499 4.1e-62 2
UNIPROTKB|Q2TAQ1 - symbol:ikbkap "Putative elongator comp... 456 3.8e-59 2
FB|FBgn0037926 - symbol:Elp1 "Elongator complex protein 1... 337 1.7e-57 5
ASPGD|ASPL0000074831 - symbol:AN10551 species:162425 "Eme... 345 6.2e-57 5
UNIPROTKB|G4MTL1 - symbol:MGG_07174 "Elongator complex pr... 418 1.2e-52 3
POMBASE|SPBC36.07 - symbol:elp1 "elongator subunit Elp1 (... 308 2.0e-52 3
UNIPROTKB|F1P5L4 - symbol:IKBKAP "Uncharacterized protein... 214 1.6e-18 2
WB|WBGene00022463 - symbol:elpc-1 species:6239 "Caenorhab... 180 5.0e-18 3
UNIPROTKB|F1NJW8 - symbol:IKBKAP "Uncharacterized protein... 179 3.7e-15 2
>TAIR|locus:2173199 [details] [associations]
symbol:ABO1 "ABA-OVERLY SENSITIVE 1" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM]
[GO:0032784 "regulation of DNA-dependent transcription, elongation"
evidence=ISS] [GO:0008283 "cell proliferation" evidence=IMP]
[GO:0035265 "organ growth" evidence=IMP] [GO:0009787 "regulation of
abscisic acid mediated signaling pathway" evidence=IMP] [GO:0071215
"cellular response to abscisic acid stimulus" evidence=IMP]
[GO:0006979 "response to oxidative stress" evidence=IMP]
[GO:0008284 "positive regulation of cell proliferation"
evidence=IMP] [GO:0009737 "response to abscisic acid stimulus"
evidence=IMP] [GO:0031538 "negative regulation of anthocyanin
metabolic process" evidence=IMP] [GO:2000024 "regulation of leaf
development" evidence=IMP] [GO:0010928 "regulation of auxin
mediated signaling pathway" evidence=IMP] [GO:0033588 "Elongator
holoenzyme complex" evidence=IDA] [GO:0006400 "tRNA modification"
evidence=IMP] [GO:0009965 "leaf morphogenesis" evidence=IMP]
[GO:0048530 "fruit morphogenesis" evidence=IMP] [GO:0080178
"5-carbamoylmethyluridine metabolic process" evidence=IMP]
[GO:0005829 "cytosol" evidence=IDA] [GO:0006312 "mitotic
recombination" evidence=RCA] [GO:0009560 "embryo sac egg cell
differentiation" evidence=RCA] InterPro:IPR017986
InterPro:IPR015943 PROSITE:PS50082 PROSITE:PS50294 Pfam:PF04762
GO:GO:0005829 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0006979 GO:GO:0009738 GO:GO:0009734 GO:GO:0006355
Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678 GO:GO:0008284
GO:GO:0008283 GO:GO:0006351 EMBL:AB006704 GO:GO:0016746
GO:GO:0035265 GO:GO:0006400 GO:GO:0009965 GO:GO:0071215
GO:GO:0048530 IPI:IPI00517421 RefSeq:NP_196872.1 UniGene:At.6476
ProteinModelPortal:Q9FNA4 SMR:Q9FNA4 STRING:Q9FNA4 PaxDb:Q9FNA4
PRIDE:Q9FNA4 EnsemblPlants:AT5G13680.1 GeneID:831213
KEGG:ath:AT5G13680 TAIR:At5g13680 eggNOG:COG5290
HOGENOM:HOG000242374 InParanoid:Q9FNA4 KO:K11373 OMA:HPVNQVT
PhylomeDB:Q9FNA4 ProtClustDB:CLSN2687035 Genevestigator:Q9FNA4
GO:GO:0033588 GO:GO:0080178 GO:GO:0031538 GO:GO:0009787
GO:GO:0010928 GO:GO:2000024 InterPro:IPR006849 PANTHER:PTHR12747
PIRSF:PIRSF017233 Uniprot:Q9FNA4
Length = 1319
Score = 3842 (1357.5 bits), Expect = 0., P = 0.
Identities = 772/1328 (58%), Positives = 944/1328 (71%)
Query: 1 MNNLKLCAEVPLNLELQSKDEILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIK 60
M NLKL +EVP N++L S +E++QF+A DI+Q+RLFFASSAN +Y+ QLSSFQNE A K
Sbjct: 1 MKNLKLFSEVPQNIQLHSTEEVVQFAAYDIDQSRLFFASSANFVYALQLSSFQNESAGAK 60
Query: 61 TAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATXXXXXXXXXXX 120
+A+ E+ ID+EPGD ITAFDYL EKE+L++GTS GLLL+H+V+ + T
Sbjct: 61 SAMPVEVCSIDIEPGDFITAFDYLAEKESLLIGTSHGLLLVHNVESDVTELVGNIEGGVK 120
Query: 121 FISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELXXXXXXXXXXX 180
ISP+P GDLLG+ TG GQ+LVMT+DW L+YE L E+ EG V E
Sbjct: 121 CISPNPTGDLLGLITGLGQLLVMTYDWALMYEKALGEVPEGGYVRETNDLSVNCGGISIS 180
Query: 181 WRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAV 240
WRGDGKYFAT+ E S + K++K+WE DSG LQ+SSE K F +LEWMPSGA IAAV
Sbjct: 181 WRGDGKYFATMGEVYESGCMSKKIKIWESDSGALQSSSETKEFTQGILEWMPSGAKIAAV 240
Query: 241 YDRKSENKCPSIVFYERNGLERSSFDINEQIDST--VELLKWNCMSDLLAAVVRFEEYDS 298
Y RKS++ PSI F+ERNGLERSSF I E D+T E LKWN SDLLA VV + YD+
Sbjct: 241 YKRKSDDSSPSIAFFERNGLERSSFRIGEPEDATESCENLKWNSASDLLAGVVSCKTYDA 300
Query: 299 VKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMEN 358
+++ FFSNNHWYLK EIRY R G+ MW PTKPLQLICWTL GQ++ +F+W TAVME+
Sbjct: 301 IRVWFFSNNHWYLKQEIRYPREAGVTVMWDPTKPLQLICWTLSGQVSVRHFMWVTAVMED 360
Query: 359 STALVIDGSKILVTXXXXXXXXXXXXXXXXKFPTAVTEMAFYSKSSKNCLAAILSDGCLC 418
STA VID SKILVT F +AV ++A+YS++SKNCLA LSDG L
Sbjct: 361 STAFVIDNSKILVTPLSLSLMPPPMYLFSLSFSSAVRDIAYYSRNSKNCLAVFLSDGNLS 420
Query: 419 VVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGXXXXXXXXXXGPRHSNYFRGA 478
V+ PAP+ EDLEG +F VE +TA GS +HL+WL G H+
Sbjct: 421 FVEFPAPNTWEDLEGKDFSVEISDCKTALGSFVHLLWLDVHSLLCVSAYGSSHNKCLSSG 480
Query: 479 TLNEDGLLGFYAQEIELACSEDHVQGLLTCAGWHAKVSTQIPLEGLVIAIAPNNAKKYSA 538
+ + L G Y QE+E+ C EDHV +TC+G+ A ++ Q LE V+A+A N +K+ SA
Sbjct: 481 GYDTE-LHGSYLQEVEVVCHEDHVPDQVTCSGFKASITFQTLLESPVLALAWNPSKRDSA 539
Query: 539 FLQFHGGKISEYMSRVGLTGGALTHDDASFPSSCPWMNVVSVGTNGPLKPLLFGLDDGGR 598
F++F GGK+ Y SR + + D FPS+CPW+ V V +G KPL+ GLDD GR
Sbjct: 540 FVEFEGGKVLGYASRSEIMETRSSDDSVCFPSTCPWVRVAQVDASGVHKPLICGLDDMGR 599
Query: 599 LHVSGKIVCNNCSSFSFYSKSAGQAMSHLILATKQNLLFIVDISDILHGELALKYENFTH 658
L ++GK +CNNCSSFSFYS+ A + ++HLI+ TKQ+ LFIVD D+L+G++AL F
Sbjct: 600 LSINGKNLCNNCSSFSFYSELANEVVTHLIILTKQDFLFIVDTKDVLNGDVALGNVFFVI 659
Query: 659 VGNRRKEENISYINIWERGAKVIGVLHGDEAAVILQTNRGNLECMYPRKLVLTSIVNALI 718
G RR EEN+SY+NIWERGAKVIGVL+GDEAAVILQT RGNLEC+YPRKLVL+SI NAL
Sbjct: 660 DGRRRDEENMSYVNIWERGAKVIGVLNGDEAAVILQTMRGNLECIYPRKLVLSSITNALA 719
Query: 719 QGRFRDALVMVRRHRINFNVIVDHCGWQAFLQSASEFVRQVNNLSYITEFVCAINNENIT 778
Q RF+DA +VRRHRI+FNVIVD GWQAFLQSA FV QVNNL+++TEFVCA+ NE++T
Sbjct: 720 QQRFKDAFNLVRRHRIDFNVIVDLYGWQAFLQSAVAFVEQVNNLNHVTEFVCAMKNEDVT 779
Query: 779 ETLYKKFQFLSLPCREEFKDLPAKDFKASECNKVSSVLLAIRKALEEKVPESPSRELCIL 838
ETLYKKF F S E F+ KD S NKVSSVL AIRKALEE +PESPSRELCIL
Sbjct: 780 ETLYKKFSF-SKKGDEVFR---VKD---SCSNKVSSVLQAIRKALEEHIPESPSRELCIL 832
Query: 839 TTLARSDPPALEEALERIKIIRETELLGS-DEPRRMSYPSAEEALKHLLWLADSEAVYEA 897
TTLARSDPPA+EE+L RIK +RE ELL S D+ R+ S PSAEEALKHLLWL DSEAV+EA
Sbjct: 833 TTLARSDPPAIEESLLRIKSVREMELLNSSDDIRKKSCPSAEEALKHLLWLLDSEAVFEA 892
Query: 898 ALGLYDLNLAAIVALNSQRDPKEFLPYLQELESMPPLLMRYTIDLRLQRFENALKHIVSM 957
ALGLYDLNLAAIVALNSQRDPKEFLPYLQELE MP LM + ID++LQRF++AL++IVS
Sbjct: 893 ALGLYDLNLAAIVALNSQRDPKEFLPYLQELEKMPESLMHFKIDIKLQRFDSALRNIVSA 952
Query: 958 GDSYHADCLNLMKKYAQLFPLGLKLITDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCS 1017
G Y DC+NL+KK QLFPLGL LITDP K VLEAWADHL D K FEDAATTY CC
Sbjct: 953 GVGYFPDCMNLIKKNPQLFPLGLLLITDPEKKLVVLEAWADHLIDEKRFEDAATTYLCCC 1012
Query: 1018 SLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKXXXXXXXXXXXXGKPGEAAKIALDYC 1077
LEKA KAYR G+WSGVL V L+KLGKDE+ K GKP EAAKIAL+YC
Sbjct: 1013 KLEKASKAYRECGDWSGVLRVGALMKLGKDEILKLAYELCEEVNALGKPAEAAKIALEYC 1072
Query: 1078 GDVTNGISLLIDARDWEEALRVAFMHRREDLITKVKHASLECASSLIGEYKEGLEKVGKY 1137
D++ GISLLI+AR+WEEALRVAF+H +D I+ VK ++LECAS L+ E+KE +EKVGKY
Sbjct: 1073 SDISGGISLLINAREWEEALRVAFLHTADDRISVVKSSALECASGLVSEFKESIEKVGKY 1132
Query: 1138 LTRYXXXXXXXXXXXXXXXSEDRSMNDLDDDTVSETSSTFSGMSVYXXXXXXXXXXXXXX 1197
LTRY SE+RS+ DLDDDT SE SS SGMS Y
Sbjct: 1133 LTRYLAVRQRRLLLAAKLKSEERSVVDLDDDTASEASSNLSGMSAYTLGTRRGSAASVSS 1192
Query: 1198 XXXXXXXXRESKRQRNRGKIRPGSPGEEMALVDHLKGMSLTVGAKQELKSLVVFLVMLGE 1257
R+ +RQR GKIR GS GEEMALVDHLKGM +T G K+ELKSL++ LV LGE
Sbjct: 1193 SNATSRA-RDLRRQRKSGKIRAGSAGEEMALVDHLKGMRMTDGGKRELKSLLICLVTLGE 1251
Query: 1258 VDTARKLQDTGETFQLSQMAAIKLAEDTMSIDIINEHAHNMERYVQIVKLESQNSEAFSW 1317
+++A+KLQ T E FQ+SQ+AA++LA DT+S + ++E + ERY Q + +++S+AFSW
Sbjct: 1252 MESAQKLQQTAENFQVSQVAAVELAHDTVSSESVDEEVYCFERYAQKTRSTARDSDAFSW 1311
Query: 1318 RSKVFLSP 1325
KVF+SP
Sbjct: 1312 MLKVFISP 1319
>UNIPROTKB|F1SP27 [details] [associations]
symbol:IKBKAP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0033588 "Elongator holoenzyme complex" evidence=IEA]
[GO:0030335 "positive regulation of cell migration" evidence=IEA]
[GO:0016591 "DNA-directed RNA polymerase II, holoenzyme"
evidence=IEA] [GO:0008607 "phosphorylase kinase regulator activity"
evidence=IEA] [GO:0008023 "transcription elongation factor complex"
evidence=IEA] [GO:0006368 "transcription elongation from RNA
polymerase II promoter" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] Pfam:PF04762 GO:GO:0005737
GO:GO:0005730 GO:GO:0003677 Gene3D:2.120.10.30 InterPro:IPR011042
GO:GO:0008607 GO:GO:0006368 GO:GO:0016591 GO:GO:0008023 OMA:HPVNQVT
InterPro:IPR006849 PANTHER:PTHR12747 PIRSF:PIRSF017233
GeneTree:ENSGT00390000013344 EMBL:CU442740
Ensembl:ENSSSCT00000005985 Uniprot:F1SP27
Length = 1342
Score = 502 (181.8 bits), Expect = 3.9e-89, Sum P(4) = 3.9e-89
Identities = 143/472 (30%), Positives = 219/472 (46%)
Query: 811 KVSSVLLAIRKALEEKVPESPSRELCILTTLARSDPPALEEALERIKIIRETELLGSDEP 870
KV + A+R A+E P L ILT+ + P LE L+++ ++ L D
Sbjct: 825 KVDLICDAMRAAMENINPHKYC--LSILTSHVKKTTPELETVLQKVHELQGNAALVPDAV 882
Query: 871 RRMSYPSAEEALKHLLWLADSEAVYEAALGLYDLNLAAIVALNSQRDPKEFLPYLQELES 930
SAEEALK+LL L D +Y+ +LG Y+ +L +VA SQ+DPKE+LP+L L+
Sbjct: 883 ------SAEEALKYLLLLVDVNELYDHSLGTYNFDLVLMVAEKSQKDPKEYLPFLNTLKK 936
Query: 931 MPPLLMRYTIDLRLQRFENALKHIVSMGDSYHADCLNLMKKYAQLFPLGLKLIT-DPAKM 989
M R+TID L+R+E A+ H+ G Y +CLNL+K L+ L+L D +
Sbjct: 937 METNYQRFTIDKYLKRYEKAIGHLSKCGPEYFPECLNLIKD-KNLYNKALELYPPDSQQY 995
Query: 990 EQVLEAWADHLSDVKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEV 1049
+ + A+ +HL E A + C + EKA+ A+ A GNW L VA L+L KD++
Sbjct: 996 KDISIAYGEHLLQEHLHEPAGLVFARCGAHEKALSAFLACGNWRQALCVAAQLELNKDQL 1055
Query: 1050 AKXXXXXXXXXXXXGKPGEAAKIALDYCGDVTNGISLLIDARDWEEALRVAFMHRREDLI 1109
A K +AA + Y D + LL++ WEEALR+ + R D+I
Sbjct: 1056 ASLGRTLAGKLVEQRKYSDAAAVLEQYAQDYEEAVLLLLEGAAWEEALRLVHKYNRPDII 1115
Query: 1110 -TKVKHASLECASSLIGEYKEGLEKVGKYLTRYXXXXXXXXXXXXXXXS---EDRSMNDL 1165
T VK + LE + Y L+ +R+ +D + +
Sbjct: 1116 ETNVKPSILEAQKN----YMAFLDSQSSIFSRHKNRLLVVRELKEQAQQVNLDDEAPHGQ 1171
Query: 1166 DDDTVSETSSTFSGMSVYXXXXXXXXXXXXXXXXXXXXXXRESKRQRNRGKIRPGSPGEE 1225
+ D SETSS SG + K +R + ++ GSP E+
Sbjct: 1172 ESDLFSETSSVMSGSDM------SGRYSHSNSRISARSSKNRRKAERKKHSLKEGSPLED 1225
Query: 1226 MALVDHLKGM-SLTVGAKQELKSLVVFLVMLGEVDTARKLQDTGE-TFQLSQ 1275
+AL++ L + T K E+ ++ L + G + R+LQ T E T QL +
Sbjct: 1226 LALLEALSEVVQSTEQLKDEISHILKMLFLFGFDEQGRELQKTFEDTLQLME 1277
Score = 256 (95.2 bits), Expect = 3.9e-89, Sum P(4) = 3.9e-89
Identities = 97/357 (27%), Positives = 174/357 (48%)
Query: 515 VSTQIPLEGLVIAIAPNNAKKYSAFLQFHGGKISEYMSRVGLTGGALTHDDASFPSSCPW 574
+S+ + ++G +I++ N+ K S LQ GG+I +Y+ + FP P+
Sbjct: 557 ISSSVTVDGSIISLCCNSKSK-SVALQMTGGQILKYLWESPSPAVEPWKNPGGFPVRFPY 615
Query: 575 -MNVVSVGTNGPLKPLLFGLDDGGRLHVSGKIVCNNCSSFSFYSKSAGQAMSHLILATKQ 633
+ + G + +L GL D R ++ V +N +SF+ Y + L+L T
Sbjct: 616 PCTQMELAMIGGEECVL-GLTDRCRFFINDTEVASNVTSFAVYDE-------FLLLTTHS 667
Query: 634 N--LLFIVDISDILHGELALKYENFTHVGNRRKEENISYINIWERGAKVIGVLHGDEAAV 691
+ L F + + + + L + +HV N E++ + ERG++++ V+ D +
Sbjct: 668 HTCLCFCLREASLKTLQAGL---SSSHVPNG---ESLRKV---ERGSRIVTVVPQD-TKL 717
Query: 692 ILQTNRGNLECMYPRKLVLTSIVNALIQGRFRDALVMVRRHRINFNVIVDHCGWQAFLQS 751
ILQ RGNLE ++ R LVL I L + F++A +R+ RIN N+I DH + FL++
Sbjct: 718 ILQMPRGNLEVVHHRALVLAQIRKWLDKLMFKEAFECMRKLRINLNLIHDH-NPKVFLEN 776
Query: 752 ASEFVRQVNNLSYITEFVCAINNENITETLYKKFQFLSLPCREEFKDLPAKDFKASECNK 811
F+RQ++++++I F + E++T+T+Y S P + P+ D + K
Sbjct: 777 VDTFIRQIDSVNHINLFFTELKEEDVTKTMYPP---PSTPTVQ-----PSSD---PDGKK 825
Query: 812 VSSVLLAIRKALEEKVPESPSRELCILTTLARSDPPALEEALERIKIIRETELLGSD 868
V + A+R A+E P L ILT+ + P LE L+++ ++ L D
Sbjct: 826 VDLICDAMRAAMENINPHKYC--LSILTSHVKKTTPELETVLQKVHELQGNAALVPD 880
Score = 240 (89.5 bits), Expect = 3.9e-89, Sum P(4) = 3.9e-89
Identities = 76/265 (28%), Positives = 126/265 (47%)
Query: 128 GDLLGVTTGFGQILVMTHDWD---LLYENPLEELAEGFDVHEPELXXXXXXXXXXXWRGD 184
G+ +T G+G+ H + ++ + E A +D H P++ WRGD
Sbjct: 164 GESKFITVGWGRKETQFHGSEGRQAAFQVHMHESALPWDDHRPQIT----------WRGD 213
Query: 185 GKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRK 244
G++FA +S C + K ++VW R+ LQ++SE A +G L W PSG+ IA+ D+
Sbjct: 214 GQFFA-VSVVCPETGARK-VRVWSREFA-LQSTSEPVAGLGPALAWKPSGSLIASTQDKP 270
Query: 245 SENKCPSIVFYERNGLERSSFDINEQIDST-VELLKWNCMSDLLAAVV---RFEEYDSVK 300
++ +VF+E+NGL F + D V L WN S +LA + + EE ++K
Sbjct: 271 NQQ---DVVFFEKNGLLHGHFTLPFLKDEVKVNDLLWNADSAVLAVWLEDLQTEEKSTLK 327
Query: 301 ----ICFFSNNHWYLKYEIRYL---RRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTT 353
+ N HWYLK + + + + MW P P +L Y++ WTT
Sbjct: 328 SYVQLWTVGNYHWYLKQSLPFSSCGKSKIVSLMWDPVAPYRLHVLCQGWHYLCYDWHWTT 387
Query: 354 A------VMENSTALVIDGSKILVT 372
+ + + V+DG+++LVT
Sbjct: 388 DRSSGDNLSDMANVAVVDGNRVLVT 412
Score = 86 (35.3 bits), Expect = 3.9e-89, Sum P(4) = 3.9e-89
Identities = 37/158 (23%), Positives = 70/158 (44%)
Query: 1 MNNLKLCAEVPLNLELQSKDEILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIK 60
M NLKL + ++Q+ + FS L EQ + S + ++ + E +K
Sbjct: 11 MRNLKLLRTLEFR-DIQAPGKPQCFS-LRGEQGTVLIGSEHGLV---EVDAVTRE---VK 62
Query: 61 TAISAEIEHIDLEPGDS-ITAFDYLMEKEALIVGTSSGLLLLHSVDGNATXXXXXXXXXX 119
I E E G I L++ E++ V T+SG ++L ++ +
Sbjct: 63 NEIPLVAEGFLPEDGSGCIVGIQDLLDHESVCVATASGDVILCNLSTHQLECVGSVASGI 122
Query: 120 XFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEE 157
+S SPD +L+ + TG +++MT D++ + E + +
Sbjct: 123 SVMSWSPDQELVLLATGQQTLIMMTKDFEPIMEQQIHQ 160
>UNIPROTKB|O95163 [details] [associations]
symbol:IKBKAP "Elongator complex protein 1" species:9606
"Homo sapiens" [GO:0008023 "transcription elongation factor
complex" evidence=IDA] [GO:0006357 "regulation of transcription
from RNA polymerase II promoter" evidence=IDA;TAS] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0008607 "phosphorylase kinase
regulator activity" evidence=IDA] [GO:0033588 "Elongator holoenzyme
complex" evidence=IDA] [GO:0004871 "signal transducer activity"
evidence=TAS] [GO:0006461 "protein complex assembly" evidence=TAS]
[GO:0006468 "protein phosphorylation" evidence=TAS] [GO:0006955
"immune response" evidence=TAS] [GO:0030335 "positive regulation of
cell migration" evidence=ISS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0016591 "DNA-directed RNA polymerase II,
holoenzyme" evidence=IDA] [GO:0003677 "DNA binding" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0006368 "transcription
elongation from RNA polymerase II promoter" evidence=IDA]
[GO:0007165 "signal transduction" evidence=TAS] Pfam:PF04762
GO:GO:0005524 GO:GO:0005737 GO:GO:0006955 GO:GO:0005730
GO:GO:0006461 Gene3D:2.120.10.30 InterPro:IPR011042 GO:GO:0006468
GO:GO:0008607 GO:GO:0006357 GO:GO:0004672 GO:GO:0004871
EMBL:AL359692 EMBL:CH471105 GO:GO:0030335 GO:GO:0006368
GO:GO:0016591 GO:GO:0008023 EMBL:AL354797 eggNOG:COG5290 KO:K11373
OMA:HPVNQVT GO:GO:0033588 InterPro:IPR006849 PANTHER:PTHR12747
PIRSF:PIRSF017233 EMBL:AF044195 EMBL:AF153419 EMBL:AK001641
EMBL:AK289962 EMBL:AL049945 IPI:IPI00293735 RefSeq:NP_003631.2
UniGene:Hs.494738 ProteinModelPortal:O95163 SMR:O95163
DIP:DIP-27579N IntAct:O95163 MINT:MINT-1034584 STRING:O95163
PhosphoSite:O95163 PaxDb:O95163 PRIDE:O95163
Ensembl:ENST00000374647 GeneID:8518 KEGG:hsa:8518 UCSC:uc004bdl.3
CTD:8518 GeneCards:GC09M111629 HGNC:HGNC:5959 HPA:CAB021340
MIM:223900 MIM:603722 neXtProt:NX_O95163 Orphanet:1764
PharmGKB:PA29775 HOVERGEN:HBG019038 InParanoid:O95163
OrthoDB:EOG4KPT90 PhylomeDB:O95163 ChEMBL:CHEMBL1818
GenomeRNAi:8518 NextBio:31890 ArrayExpress:O95163 Bgee:O95163
CleanEx:HS_IKBKAP Genevestigator:O95163 GermOnline:ENSG00000070061
GO:GO:0007252 Uniprot:O95163
Length = 1332
Score = 478 (173.3 bits), Expect = 2.1e-87, Sum P(4) = 2.1e-87
Identities = 141/471 (29%), Positives = 216/471 (45%)
Query: 810 NKVSSVLLAIRKALEEKVPESPSRELCILTTLARSDPPALEEALERIKIIRETELLGSDE 869
NK+ V A+R +E P L ILT+ + P LE L+++ EL G+
Sbjct: 814 NKIDLVCDAMRAVMESINPHKYC--LSILTSHVKKTTPELEIVLQKVH-----ELQGN-A 865
Query: 870 PRRMSYPSAEEALKHLLWLADSEAVYEAALGLYDLNLAAIVALNSQRDPKEFLPYLQELE 929
P SAEEALK+LL L D +Y+ +LG YD +L +VA SQ+DPKE+LP+L L+
Sbjct: 866 PSDPDAVSAEEALKYLLHLVDVNELYDHSLGTYDFDLVLMVAEKSQKDPKEYLPFLNTLK 925
Query: 930 SMPPLLMRYTIDLRLQRFENALKHIVSMGDSYHADCLNLMKKYAQLFPLGLKLITDPAKM 989
M R+TID L+R+E A+ H+ G Y +CLNL+K L+ LKL + ++
Sbjct: 926 KMETNYQRFTIDKYLKRYEKAIGHLSKCGPEYFPECLNLIKD-KNLYNEALKLYSPSSQQ 984
Query: 990 EQVLE-AWADHLSDVKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDE 1048
Q + A+ +HL +E A + C + EKA+ A+ GNW L VA L KD+
Sbjct: 985 YQDISIAYGEHLMQEHMYEPAGLMFARCGAHEKALSAFLTCGNWKQALCVAAQLNFTKDQ 1044
Query: 1049 VAKXXXXXXXXXXXXGKPGEAAKIALDYCG-DVTNGISLLIDARDWEEALRVAFMHRRED 1107
+ K +AA + L+ C D + LL++ WEEALR+ + + R D
Sbjct: 1045 LVGLGRTLAGKLVEQRKHIDAAMV-LEECAQDYEEAVLLLLEGAAWEEALRLVYKYNRLD 1103
Query: 1108 LI-TKVKHASLECASSLIGEYKEGLEKVGKYLTRYXXXXXXXXXXXXXXXSEDRSMNDLD 1166
+I T VK + LE + + ++ R +D + +
Sbjct: 1104 IIETNVKPSILEAQKNYMAFLDSQTATFSRHKKRLLVVRELKEQAQQAGL-DDEVPHGQE 1162
Query: 1167 DDTVSETSSTFSGMSVYXXXXXXXXXXXXXXXXXXXXXXRESKRQRNRGKIRPGSPGEEM 1226
D SETSS SG + K +R + ++ GSP E++
Sbjct: 1163 SDLFSETSSVVSGSEM------SGKYSHSNSRISARSSKNRRKAERKKHSLKEGSPLEDL 1216
Query: 1227 ALVDHLKGM-SLTVGAKQELKSLVVFLVMLGEVDTARKLQDTGE-TFQLSQ 1275
AL++ L + T K E+ ++ L + + R+LQ E T QL +
Sbjct: 1217 ALLEALSEVVQNTENLKDEVYHILKVLFLFEFDEQGRELQKAFEDTLQLME 1267
Score = 271 (100.5 bits), Expect = 2.1e-87, Sum P(4) = 2.1e-87
Identities = 91/305 (29%), Positives = 140/305 (45%)
Query: 128 GDLLGVTTGFGQILVMTHDWD---LLYENPLEELAEGFDVHEPELXXXXXXXXXXXWRGD 184
G+ +T G+G+ H + ++ + E A +D H P++ WRGD
Sbjct: 154 GESKFITVGWGRKETQFHGSEGRQAAFQMQMHESALPWDDHRPQVT----------WRGD 203
Query: 185 GKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRK 244
G++FA +S C + K ++VW R+ LQ++SE A +G L W PSG+ IA+ D+
Sbjct: 204 GQFFA-VSVVCPETGARK-VRVWNREFA-LQSTSEPVAGLGPALAWKPSGSLIASTQDKP 260
Query: 245 SENKCPSIVFYERNGLERSSFDINEQIDST-VELLKWNCMSDLLAAVV---RFEEYDSVK 300
++ IVF+E+NGL F + D V L WN S +LA + + EE K
Sbjct: 261 NQQ---DIVFFEKNGLLHGHFTLPFLKDEVKVNDLLWNADSSVLAVWLEDLQREESSIPK 317
Query: 301 ICF----FSNNHWYLKYEIRYL---RRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTT 353
C N HWYLK + + + + MW P P +L Y++ WTT
Sbjct: 318 TCVQLWTVGNYHWYLKQSLSFSTCGKSKIVSLMWDPVTPYRLHVLCQGWHYLAYDWHWTT 377
Query: 354 --AVMENSTAL----VIDGSKILVTXXXXXXXXXXXXXXXXKFPTAVTEMAFYSKSSK-N 406
+V +NS+ L VIDG+++LVT FP V ++ F + K N
Sbjct: 378 DRSVGDNSSDLSNVAVIDGNRVLVTVFRQTVVPPPMCTYQLLFPHPVNQVTFLAHPQKSN 437
Query: 407 CLAAI 411
LA +
Sbjct: 438 DLAVL 442
Score = 227 (85.0 bits), Expect = 2.1e-87, Sum P(4) = 2.1e-87
Identities = 88/343 (25%), Positives = 157/343 (45%)
Query: 515 VSTQIPLEGLVIAIAPNNAKKYSAFLQFHGGKISEYMSRVGLTGGALTHDDASFPSSCPW 574
VS+ ++G++I++ N+ K S LQ G+I +Y+ + FP P+
Sbjct: 547 VSSSAAVDGVIISLCCNSKTK-SVVLQLADGQIFKYLWESPSLAIKPWKNSGGFPVRFPY 605
Query: 575 -MNVVSVGTNGPLKPLLFGLDDGGRLHVSGKIVCNNCSSFSFYSKSAGQAMSHLILATKQ 633
+ G + +L GL D R ++ V +N +SF+ Y + L+L T
Sbjct: 606 PCTQTELAMIGEEECVL-GLTDRCRFFINDIEVASNITSFAVYDE-------FLLLTTHS 657
Query: 634 NLLFIVDISDILHGELALKYENFTHVGNRRKEENISYINIWERGAKVIGVLHGDEAAVIL 693
+ + D L + HV + + ERG++++ V+ D ++L
Sbjct: 658 HTCQCFCLRDASFKTLQAGLSS-NHVSHGEVLRKV------ERGSRIVTVVPQD-TKLVL 709
Query: 694 QTNRGNLECMYPRKLVLTSIVNALIQGRFRDALVMVRRHRINFNVIVDHCGWQAFLQSAS 753
Q RGNLE ++ R LVL I L + F++A +R+ RIN N+I DH + FL +
Sbjct: 710 QMPRGNLEVVHHRALVLAQIRKWLDKLMFKEAFECMRKLRINLNLIYDH-NPKVFLGNVE 768
Query: 754 EFVRQVNNLSYITEFVCAINNENITETLYKKFQFLSLPCREEFKDLPAKDFKASECNKVS 813
F++Q++++++I F + E++T+T+Y P ++D + NK+
Sbjct: 769 TFIKQIDSVNHINLFFTELKEEDVTKTMY--------PAPVTSSVYLSRD---PDGNKID 817
Query: 814 SVLLAIRKALEEKVPESPSRELCILTTLARSDPPALEEALERI 856
V A+R +E P L ILT+ + P LE L+++
Sbjct: 818 LVCDAMRAVMESINPHKYC--LSILTSHVKKTTPELEIVLQKV 858
Score = 93 (37.8 bits), Expect = 2.1e-87, Sum P(4) = 2.1e-87
Identities = 39/158 (24%), Positives = 68/158 (43%)
Query: 1 MNNLKLCAEVPLNLELQSKDEILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIK 60
M NLKL + ++Q FS L EQ + S I ++ E +K
Sbjct: 1 MRNLKLFRTLEFR-DIQGPGNPQCFS-LRTEQGTVLIGSEHGLI---EVDPVSRE---VK 52
Query: 61 TAISAEIEHIDLEPGDS-ITAFDYLMEKEALIVGTSSGLLLLHSVDGNATXXXXXXXXXX 119
+S E E G I L+++E++ V T+SG ++L S+
Sbjct: 53 NEVSLVAEGFLPEDGSGRIVGVQDLLDQESVCVATASGDVILCSLSTQQLECVGSVASGI 112
Query: 120 XFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEE 157
+S SPD +L+ + TG +++MT D++ + E + +
Sbjct: 113 SVMSWSPDQELVLLATGQQTLIMMTKDFEPILEQQIHQ 150
Score = 37 (18.1 bits), Expect = 5.5e-63, Sum P(4) = 5.5e-63
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 323 IRFMWHPTKPLQLICWTLDGQITTY 347
+ F+ HP K L QI+ Y
Sbjct: 427 VTFLAHPQKSNDLAVLDASNQISVY 451
>MGI|MGI:1914544 [details] [associations]
symbol:Ikbkap "inhibitor of kappa light polypeptide enhancer
in B cells, kinase complex-associated protein" species:10090 "Mus
musculus" [GO:0004672 "protein kinase activity" evidence=ISO]
[GO:0005524 "ATP binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006357 "regulation
of transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0006368 "transcription elongation from RNA polymerase II
promoter" evidence=ISO] [GO:0007252 "I-kappaB phosphorylation"
evidence=ISO] [GO:0008023 "transcription elongation factor complex"
evidence=ISO] [GO:0008607 "phosphorylase kinase regulator activity"
evidence=ISO] [GO:0016591 "DNA-directed RNA polymerase II,
holoenzyme" evidence=ISO] [GO:0030335 "positive regulation of cell
migration" evidence=IMP] [GO:0033588 "Elongator holoenzyme complex"
evidence=ISO] MGI:MGI:1914544 Pfam:PF04762 GO:GO:0005524
GO:GO:0005737 GO:GO:0005730 GO:GO:0003677 Gene3D:2.120.10.30
InterPro:IPR011042 GO:GO:0008607 GO:GO:0006357 GO:GO:0004672
EMBL:AL807762 GO:GO:0030335 GO:GO:0006368 GO:GO:0016591
GO:GO:0008023 eggNOG:COG5290 KO:K11373 GO:GO:0033588
InterPro:IPR006849 PANTHER:PTHR12747 PIRSF:PIRSF017233
GeneTree:ENSGT00390000013344 CTD:8518 HOVERGEN:HBG019038
OrthoDB:EOG4KPT90 GO:GO:0007252 EMBL:AF367244 EMBL:AF387811
EMBL:AF140786 EMBL:AK004402 EMBL:AK076152 EMBL:AK035944
EMBL:AK147153 EMBL:AL929577 EMBL:BC052387 EMBL:BC054468
IPI:IPI00380780 RefSeq:NP_080355.2 UniGene:Mm.282743
ProteinModelPortal:Q7TT37 SMR:Q7TT37 STRING:Q7TT37
PhosphoSite:Q7TT37 PaxDb:Q7TT37 PRIDE:Q7TT37
Ensembl:ENSMUST00000030140 GeneID:230233 KEGG:mmu:230233
UCSC:uc012del.1 InParanoid:Q7TT37 OMA:NANLLCS ChiTaRS:IKBKAP
NextBio:379841 Bgee:Q7TT37 Genevestigator:Q7TT37 Uniprot:Q7TT37
Length = 1333
Score = 492 (178.3 bits), Expect = 4.1e-83, Sum P(4) = 4.1e-83
Identities = 144/473 (30%), Positives = 222/473 (46%)
Query: 811 KVSSVLLAIRKALEEKVPESPSRELC--ILTTLARSDPPALEEALERIKIIRETELLGSD 868
K+ + A+R A+E P R+ C ILT+ + P LE L++++ EL G+
Sbjct: 816 KLDLICDAMRAAMEAINP----RKFCLSILTSHVKKTTPELEIVLQKVQ-----ELQGN- 865
Query: 869 EPRRMSYPSAEEALKHLLWLADSEAVYEAALGLYDLNLAAIVALNSQRDPKEFLPYLQEL 928
P S EEALK+LL L D ++ +LG YD NL +VA SQ+DPKE+LP+L L
Sbjct: 866 LPFDPESVSVEEALKYLLLLVDVNELFNHSLGTYDFNLVLMVAEKSQKDPKEYLPFLNTL 925
Query: 929 ESMPPLLMRYTIDLRLQRFENALKHIVSMGDSYHADCLNLMKKYAQLFPLGLKLIT-DPA 987
+ M R+TID L+R+E AL H+ G Y +CLNL+K L+ LKL D
Sbjct: 926 KKMETNYQRFTIDKYLKRYEKALGHLSKCGPEYFTECLNLIKD-KNLYKEALKLYRPDSP 984
Query: 988 KMEQVLEAWADHLSDVKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKD 1047
+ + V A+ +HL +E A + C + EKA++A+ A G+W L VA L++ KD
Sbjct: 985 QYQAVSMAYGEHLMQEHLYEPAGLVFARCGAQEKALEAFLACGSWQQALCVAAQLQMSKD 1044
Query: 1048 EVAKXXXXXXXXXXXXGKPGEAAKIALDYCGDVTNGISLLIDARDWEEALRVAFMHRRED 1107
+VA K EAA + Y D + LL++ WEEALR+ + + R D
Sbjct: 1045 KVAGLARTLAGKLVEQRKHSEAATVLEQYAQDYEEAVLLLLEGSAWEEALRLVYKYDRVD 1104
Query: 1108 LI-TKVKHASLECASSLIGEYKEGLEKVGKYLTRYXXXXXXXXXXXXXXXSEDRSMNDLD 1166
+I T VK + LE + + ++ R + + +
Sbjct: 1105 IIETSVKPSILEAQKNYMDFLDSETATFIRHKNRLQVVRALRRQAPQVHVDHEVAHGP-E 1163
Query: 1167 DDTVSETSSTFSGMSVYXXXXXXXXXXXXXXXXXXXXXXRESKRQRNRGKIRPGSPGEEM 1226
D SETSS SG + K +R + ++ GSP E +
Sbjct: 1164 SDLFSETSSIMSGSEM------SGRYSHSNSRISARSSKNRRKAERKKHSLKEGSPLEGL 1217
Query: 1227 ALVDHLKGMSLTVGA-KQELKSLVVFLVMLGEVDTARKLQDTGE-TFQLSQMA 1277
AL++ L + +V K E+++++ L + + A++LQ E T QL + A
Sbjct: 1218 ALLEALSEVVQSVEKLKDEVRAILKVLFLFEFEEQAKELQRAFESTLQLMERA 1270
Score = 234 (87.4 bits), Expect = 4.1e-83, Sum P(4) = 4.1e-83
Identities = 66/209 (31%), Positives = 104/209 (49%)
Query: 181 WRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAV 240
WRGDG+YFA +S C ++ K ++VW R+ LQ++SE +G L W PSG+ IA+
Sbjct: 200 WRGDGQYFA-VSVVCRQTEARK-IRVWNREFA-LQSTSESVPGLGPALAWKPSGSLIAST 256
Query: 241 YDRKSENKCPSIVFYERNGLERSSFDINEQIDST-VELLKWNCMSDLLAAVVR-FEEYDS 298
D+ ++ +VF+E+NGL F + D V L WN S +LA + + DS
Sbjct: 257 QDKPNQQ---DVVFFEKNGLLHGHFTLPFLKDEVKVNDLLWNADSSVLAIWLEDLPKEDS 313
Query: 299 ------VKICFFSNNHWYLKYEIRYL---RRDGIRFMWHPTKPLQLICWTLDGQITTYNF 349
V++ N HWYLK + + + + +W P P +L + ++
Sbjct: 314 STLKSYVQLWTVGNYHWYLKQSLPFSTTGKNQIVSLLWDPVTPCRLHVLCTGWRYLCCDW 373
Query: 350 IWTTAVMENSTA------LVIDGSKILVT 372
WTT ++A VIDG+++LVT
Sbjct: 374 HWTTDRSSGNSANDLANVAVIDGNRVLVT 402
Score = 203 (76.5 bits), Expect = 4.1e-83, Sum P(4) = 4.1e-83
Identities = 88/346 (25%), Positives = 159/346 (45%)
Query: 515 VSTQIPLEGLVIAIAPNNAKKYSAFLQFHGGKISEYMSRVGLTGGALTHDDASFPSSCPW 574
VS+ + ++G+VI + + K S +Q G++ +Y+ + P
Sbjct: 548 VSSSVTVDGVVIGLCCCSKTK-SLAVQLADGQVLKYLWESPSLAVEPWKNSEGIPVRFVH 606
Query: 575 -MNVVSVGTNGPLKPLLFGLDDGGRLHVSGKIVCNNCSSFSFYSKSAGQAMSHLILATKQ 633
+ V T G + +L GL D R ++ V +N +SF+ L++ T
Sbjct: 607 PCTQMEVATIGGEECVL-GLTDRCRFFINDTEVASNITSFAVCD-------DFLLVTTHS 658
Query: 634 NLLFIVDISDILHGELALKYENFTHVGNRRKEENISYINIWERGAKVIGVLHGDEAAVIL 693
+ + +S +LK G+ I + ERG++++ V+ D +IL
Sbjct: 659 HTCQVFSLSGA-----SLKMLQAALSGSHEASGEI--LRKVERGSRIVTVVPQD-TKLIL 710
Query: 694 QTNRGNLECMYPRKLVLTSIVNALIQGRFRDALVMVRRHRINFNVIVDHCGWQAFLQSAS 753
Q RGNLE ++ R LVL I L + F++A +R+ RIN N+I DH + FL++
Sbjct: 711 QMPRGNLEVVHHRALVLAQIRKWLDKLMFKEAFECMRKLRINLNLIHDH-NPKVFLENVE 769
Query: 754 EFVRQVNNLSYITEFVCAINNENITETLYKKFQFLSLPCREEFKDLPAKDFKASECNKVS 813
FV+Q++++++I F + E++T+T+Y P + + D K K+
Sbjct: 770 TFVKQIDSVNHINLFFTELREEDVTKTMYPP------PITKSVQVSTHPDGK-----KLD 818
Query: 814 SVLLAIRKALEEKVPESPSRELC--ILTTLARSDPPALEEALERIK 857
+ A+R A+E P R+ C ILT+ + P LE L++++
Sbjct: 819 LICDAMRAAMEAINP----RKFCLSILTSHVKKTTPELEIVLQKVQ 860
Score = 98 (39.6 bits), Expect = 4.1e-83, Sum P(4) = 4.1e-83
Identities = 40/164 (24%), Positives = 72/164 (43%)
Query: 1 MNNLKLCAEVPLNLELQSKDEILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIK 60
M NLKL + ++Q+ + F L EQ + S L+ R +K
Sbjct: 1 MRNLKLHRTLEFR-DIQAPGKPQCF-CLRAEQGTVLIGSERG------LTEVDPVRREVK 52
Query: 61 TAISAEIEHIDLEPGDS-ITAFDYLMEKEALIVGTSSGLLLLHSVDGNATXXXXXXXXXX 119
T IS E E G I L+++E++ V T+SG +++ ++
Sbjct: 53 TEISLVAEGFLPEDGSGCIVGIQDLLDQESVCVATASGDVIVCNLSTQQLECVGSVASGI 112
Query: 120 XFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPL--EELAEG 161
+S SPD +LL + T +++MT D++++ E + ++ EG
Sbjct: 113 SVMSWSPDQELLLLATAQQTLIMMTKDFEVIAEEQIHQDDFGEG 156
>UNIPROTKB|E1BBQ3 [details] [associations]
symbol:LOC505465 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0033588 "Elongator holoenzyme complex"
evidence=IEA] [GO:0030335 "positive regulation of cell migration"
evidence=IEA] [GO:0016591 "DNA-directed RNA polymerase II,
holoenzyme" evidence=IEA] [GO:0008607 "phosphorylase kinase
regulator activity" evidence=IEA] [GO:0008023 "transcription
elongation factor complex" evidence=IEA] [GO:0006368 "transcription
elongation from RNA polymerase II promoter" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] Pfam:PF04762
GO:GO:0005737 GO:GO:0005730 GO:GO:0003677 Gene3D:2.120.10.30
InterPro:IPR011042 GO:GO:0008607 GO:GO:0006368 GO:GO:0016591
GO:GO:0008023 OMA:HPVNQVT InterPro:IPR006849 PANTHER:PTHR12747
PIRSF:PIRSF017233 GeneTree:ENSGT00390000013344 EMBL:DAAA02024462
EMBL:DAAA02024463 EMBL:DAAA02024464 IPI:IPI00707973
Ensembl:ENSBTAT00000006570 Uniprot:E1BBQ3
Length = 1191
Score = 426 (155.0 bits), Expect = 2.5e-81, Sum P(4) = 2.5e-81
Identities = 117/374 (31%), Positives = 180/374 (48%)
Query: 811 KVSSVLLAIRKALEEKVPESPSRELCILTTLARSDPPALEEALERIKIIRETELLGSDEP 870
KV + A+R A+E P L ILT+ + P LE AL+++ +L GS P
Sbjct: 815 KVDLICDAMRAAMENINPHKYC--LSILTSHVKKTTPELEIALQKVH-----KLQGSAPP 867
Query: 871 RRMSYPSAEEALKHLLWLADSEAVYEAALGLYDLNLAAIVALNSQRDPKEFLPYLQELES 930
+ SAEEALK+LL L D +Y+ +LG YD +L +VA SQ+DPKE+LP+L L+
Sbjct: 868 VPDTV-SAEEALKYLLLLVDVNELYDHSLGTYDFDLVLMVAEKSQKDPKEYLPFLNTLKK 926
Query: 931 MPPLLMRYTIDLRLQRFENALKHIVSMGDSYHADCLNLMKKYAQLFPLGLKLITDPAKM- 989
M R+TID L+R+E A+ H+ G Y +CLNL+K L+ LKL ++
Sbjct: 927 MEMNYQRFTIDKHLKRYEKAIGHLSKCGPEYFPECLNLIKD-KNLYNEALKLYPPNSQQY 985
Query: 990 EQVLEAWADHLSDVKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEV 1049
+ + A+ +HL E A + C + EKA+ A+ A G+W L A L L +++
Sbjct: 986 KDISIAYGEHLLQEHLHEPAGLVFARCGAHEKALSAFLACGSWQQALCAAAQLHLTAEQL 1045
Query: 1050 AKXXXXXXXXXXXXGKPGEAAKIALDYCGDVTNGISLLIDARDWEEALRVAFMHRREDLI 1109
A K +AA + Y D + +L++ WEEALR+ + R D+I
Sbjct: 1046 AGLGRTLAGKLVEQRKHSDAATVLEQYAQDHEEAVLVLLEGAAWEEALRLVHKYNRPDII 1105
Query: 1110 -TKVKHASLECASSLIGEYKEGLEKVGKYLTRYXXXXXXXXXXXXXXXSEDRSMNDLDDD 1168
T +K + LE + + ++ R +D + + + D
Sbjct: 1106 ETNIKPSILEGEKNYMAFLDSQTATFSRHKKRLLVVRELKEQAQPVSL-DDEAPHGPESD 1164
Query: 1169 TVSETSSTFSGMSV 1182
SETSS SG ++
Sbjct: 1165 LFSETSSVMSGSNL 1178
Score = 251 (93.4 bits), Expect = 2.5e-81, Sum P(4) = 2.5e-81
Identities = 84/305 (27%), Positives = 140/305 (45%)
Query: 128 GDLLGVTTGFGQILVMTHDWD---LLYENPLEELAEGFDVHEPELXXXXXXXXXXXWRGD 184
G+ +T G+G+ H + ++ + E A +D H P++ WRGD
Sbjct: 154 GESKFITVGWGRKETQFHGSEGRQAAFQMQMHESALPWDDHSPQVT----------WRGD 203
Query: 185 GKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRK 244
G++FA +S C + K ++VW R+ LQ++SE A +G L W PSG+ IA+ D+
Sbjct: 204 GQFFA-VSVVCPETGARK-VRVWSREFA-LQSTSEPVAGLGPALAWKPSGSLIASTQDKP 260
Query: 245 SENKCPSIVFYERNGLERSSFDINEQIDST-VELLKWNCMSDLLAA---VVRFEEYDSVK 300
++ +VF+E+NGL F + D V L WN S +LA ++ EE S+K
Sbjct: 261 NQQ---DVVFFEKNGLLHGQFTLPFFKDEVKVNGLFWNADSTVLAVWLEELQREENSSLK 317
Query: 301 ----ICFFSNNHWYLKYEIRYL---RRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTT 353
+ N HWYLK + + + + +W P P +L Y++ WTT
Sbjct: 318 TYVQLWTVGNYHWYLKQSLPFDTCGKSKIVSLLWDPVSPYRLHVLCQGWHYLCYDWHWTT 377
Query: 354 A------VMENSTALVIDGSKILVTXXXXXXXXXXXXXXXXKFPTAVTEMAFYSKSSK-N 406
+ + + VIDG+++LVT + P +V ++ F ++ K N
Sbjct: 378 DRSSGDNLSDMANVAVIDGNRVLVTVFRQSVVPPPMCTYRLQLPHSVNQVMFSARPEKSN 437
Query: 407 CLAAI 411
LA +
Sbjct: 438 DLAVL 442
Score = 242 (90.2 bits), Expect = 2.5e-81, Sum P(4) = 2.5e-81
Identities = 93/343 (27%), Positives = 163/343 (47%)
Query: 515 VSTQIPLEGLVIAIAPNNAKKYSAFLQFHGGKISEYMSRVGLTGGALTHDDASFPSSCPW 574
+S+ + ++G++I++ N K S LQ GG+I +Y+ + P P+
Sbjct: 547 ISSSVTVDGVIISLCCNPKTK-SVALQVAGGQIFKYLWESPSLAVEPWKNPGGLPVRFPY 605
Query: 575 -MNVVSVGTNGPLKPLLFGLDDGGRLHVSGKIVCNNCSSFSFYSKSAGQAMSHLILATKQ 633
+ G + +L GL D R ++ V +N +SF+ Y + L++ T
Sbjct: 606 PCTQTELAMVGGEECIL-GLTDRCRFFINDTEVASNITSFAVYDE-------FLLVTTHS 657
Query: 634 NLLFIVDISDILHGELALKYENFTHVGNRRKEENISYINIWERGAKVIGVLHGDEAAVIL 693
+ + D L + +HV N E++ + ERG++++ V+ D +IL
Sbjct: 658 HTCQCFCLRDASLKTLQAGLSS-SHVPNG---ESLRKV---ERGSRIVTVVPQD-TKLIL 709
Query: 694 QTNRGNLECMYPRKLVLTSIVNALIQGRFRDALVMVRRHRINFNVIVDHCGWQAFLQSAS 753
Q RGNLE ++ R LVL I L + F++A +R+ RIN N+I DH + FL++
Sbjct: 710 QMPRGNLEVVHHRALVLAQIRKWLDKLMFKEAFECMRKLRINLNLIHDH-NPKVFLENVE 768
Query: 754 EFVRQVNNLSYITEFVCAINNENITETLYKKFQFLSLPCREEFKDLPAKDFKASECNKVS 813
F+RQ++++++I F + E++T+T+Y +P P D K KV
Sbjct: 769 TFIRQIDSVNHINLFFTELKEEDVTKTMYPP----PVPSTVPLSSDP--DEK-----KVD 817
Query: 814 SVLLAIRKALEEKVPESPSRELCILTTLARSDPPALEEALERI 856
+ A+R A+E P L ILT+ + P LE AL+++
Sbjct: 818 LICDAMRAAMENINPHKYC--LSILTSHVKKTTPELEIALQKV 858
Score = 92 (37.4 bits), Expect = 2.5e-81, Sum P(4) = 2.5e-81
Identities = 39/159 (24%), Positives = 70/159 (44%)
Query: 1 MNNLKLCAEVPL-NLELQSKDEILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASI 59
M NLKL + +++ Q K L L EQ + S + ++ E +
Sbjct: 1 MRNLKLLRSLEFRDIQAQGKPRCL---CLRAEQATVLIGSEHGLV---EVDPVTRE---V 51
Query: 60 KTAISAEIEHIDLEPGDS-ITAFDYLMEKEALIVGTSSGLLLLHSVDGNATXXXXXXXXX 118
K I E E G I L+++E++ V T+SG +LL +++ +
Sbjct: 52 KHEIPLVAEGFLPEDGSGCIIGIQDLLDQESVCVATASGDVLLCNLNTHQLECVGSVASG 111
Query: 119 XXFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEE 157
+S SPD +LL + TG +++MT D++ + E + +
Sbjct: 112 ISVMSWSPDQELLLLATGQQTLIMMTKDFEPIMEQQIHQ 150
Score = 37 (18.1 bits), Expect = 5.8e-60, Sum P(4) = 5.8e-60
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 788 LSLPCREEFKDLPAKDFKASECNKVSSVLLA 818
L P ++ +P +D +A E N + LLA
Sbjct: 477 LRTPHLDKRYKIPIEDSEAEEVNPLKFSLLA 507
>UNIPROTKB|Q8WND5 [details] [associations]
symbol:IKBKAP "Elongator complex protein 1" species:9986
"Oryctolagus cuniculus" [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0008023 "transcription elongation
factor complex" evidence=ISS] [GO:0008607 "phosphorylase kinase
regulator activity" evidence=ISS] [GO:0030335 "positive regulation
of cell migration" evidence=ISS] [GO:0033588 "Elongator holoenzyme
complex" evidence=ISS] Pfam:PF04762 GO:GO:0005737
Gene3D:2.120.10.30 InterPro:IPR011042 GO:GO:0008607 GO:GO:0006357
GO:GO:0006351 GO:GO:0030335 GO:GO:0008023 eggNOG:COG5290
GO:GO:0033588 InterPro:IPR006849 PANTHER:PTHR12747
PIRSF:PIRSF017233 CTD:8518 HOVERGEN:HBG019038 OrthoDB:EOG4KPT90
EMBL:AF388202 RefSeq:NP_001076124.1 UniGene:Ocu.4098
ProteinModelPortal:Q8WND5 STRING:Q8WND5 GeneID:100009360
HOGENOM:HOG000007712 Uniprot:Q8WND5
Length = 1333
Score = 463 (168.0 bits), Expect = 1.7e-80, Sum P(4) = 1.7e-80
Identities = 135/468 (28%), Positives = 218/468 (46%)
Query: 811 KVSSVLLAIRKALEEKVPESPSRELCILTTLARSDPPALEEALERIKIIRETELLGSDEP 870
K+ + A+R A+E P L ILT+ + P LE L+++ EL G+ P
Sbjct: 816 KLDLICDALRVAMENINPHKYC--LPILTSHVKKTTPELEIVLQKVH-----ELQGN-AP 867
Query: 871 RRMSYPSAEEALKHLLWLADSEAVYEAALGLYDLNLAAIVALNSQRDPKEFLPYLQELES 930
SAEEALK+LL L D +Y+ +LG YD +L +VA SQ+DPKE+LP+L L+
Sbjct: 868 SDPDAVSAEEALKYLLLLVDVNELYDHSLGTYDFDLVLMVAEKSQKDPKEYLPFLNTLKK 927
Query: 931 MPPLLMRYTIDLRLQRFENALKHIVSMGDSYHADCLNLMKKYAQLFPLGLKLITDPAKME 990
M R+TID L+R+E A+ H+ G Y ++CLNL+K L+ LKL P E
Sbjct: 928 METNYQRFTIDKYLKRYEKAIGHLSKCGPEYFSECLNLIKD-KNLYNEALKLYP-PTSQE 985
Query: 991 --QVLEAWADHLSDVKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDE 1048
+ A+ +HL + +E A + C + EKA+ A+ G+W L +A L + +++
Sbjct: 986 YKDISIAYGEHLMEEHQYEPAGLVFARCGAHEKALSAFLTCGSWQQTLCMAAQLNMTEEQ 1045
Query: 1049 VAKXXXXXXXXXXXXGKPGEAAKIALDYCGDVTNGISLLIDARDWEEALRVAFMHRREDL 1108
+A K +AA + Y D + LL++ WEEALR+ + + R D+
Sbjct: 1046 LAGLGRTLAGKLAEQRKHSDAAIVLEQYTQDYEEAVLLLLEGAAWEEALRLVYKYNRLDI 1105
Query: 1109 I-TKVKHASLECASSLIGEYKEGLEKVGKYLTRYXXXXXXXXXXXXXXXSEDRSMNDLDD 1167
I T +K + LE + + + ++ R +D + +
Sbjct: 1106 IETNIKPSILEAYKNYMAFLESQSATFSRHKERLLEVRELKERAQQVDL-DDEMPHGQEA 1164
Query: 1168 DTVSETSSTFSGMSVYXXXXXXXXXXXXXXXXXXXXXXRESKRQRNRGKIRPGSPGEEMA 1227
D SETSS SG + K +R + ++ GSP E++A
Sbjct: 1165 DLFSETSSIVSGSEM------SSKYSHSNSRISARSSKNRRKAERKKHSLKEGSPLEDLA 1218
Query: 1228 LVDHLKGMSLTVGA-KQELKSLVVFLVMLGEVDTARKLQDT-GETFQL 1273
L++ L + ++ K E+ ++ L + + R+LQ T +T QL
Sbjct: 1219 LLEALNEVVQSLDKLKDEVYRILKVLFLFEFDEQGRELQKTFQDTLQL 1266
Score = 236 (88.1 bits), Expect = 1.7e-80, Sum P(4) = 1.7e-80
Identities = 93/344 (27%), Positives = 162/344 (47%)
Query: 515 VSTQIPLEGLVIAIAPNNAKKYSAFLQFHGGKISEYMSRVGLTGGALTHDDASFPSSCPW 574
VS+ I ++G++I++ N+ K S LQ G+I +Y+ + FP P+
Sbjct: 548 VSSSISVDGIIISMCCNSKTK-SVALQLADGQILKYIWESPSLAVEPWKNPGGFPIQFPY 606
Query: 575 MNV-VSVGTNGPLKPLLFGLDDGGRLHVSGKIVCNNCSSFSFYSKSAGQAMSHLILATKQ 633
+ + G + +L GL D R ++ V +N +SF+ Y + L+L T
Sbjct: 607 PCIQTELAMIGGEECVL-GLTDRCRFFINDTEVASNITSFAVYDE-------FLLLTTHS 658
Query: 634 NLLFIVDISDILHGELALKYENFTHVGNRRKEENISYINIWERGAKVIGVLHGDEAAVIL 693
+ + D L + +HV N + ERG++++ V+ D +IL
Sbjct: 659 HTCQCYCLKDASIKTLQAGLSS-SHVSNGEILRKV------ERGSRIVTVVPQD-TKLIL 710
Query: 694 QTNRGNLECMYPRKLVLTSIVNALIQGRFRDALVMVRRHRINFNVIVDHCGWQAFLQSAS 753
Q RGNLE ++ R LVL I L + F++A +R+ RIN N+I DH + FLQ+
Sbjct: 711 QMPRGNLEVVHHRALVLAQIRKWLDKIMFKEAFECMRKLRINLNLIHDH-NPEVFLQNVE 769
Query: 754 EFVRQVNNLSYITEFVCAINNENITETLYKKFQFLSLPCR-EEFKDLPAKDFKASECNKV 812
F+RQ++ +++I F + E++T+T+Y +P ++ +D P K+
Sbjct: 770 TFIRQIDCVNHINLFFTELKEEDVTKTMYPP----PVPSSVQQSRD-PGG-------TKL 817
Query: 813 SSVLLAIRKALEEKVPESPSRELCILTTLARSDPPALEEALERI 856
+ A+R A+E P L ILT+ + P LE L+++
Sbjct: 818 DLICDALRVAMENINPHKYC--LPILTSHVKKTTPELEIVLQKV 859
Score = 226 (84.6 bits), Expect = 1.7e-80, Sum P(4) = 1.7e-80
Identities = 86/305 (28%), Positives = 134/305 (43%)
Query: 128 GDLLGVTTGFGQILVMTHDWD---LLYENPLEELAEGFDVHEPELXXXXXXXXXXXWRGD 184
G+ +T G+G+ H + ++ E A +D H P + WRGD
Sbjct: 154 GESKFITVGWGKKETQFHGSEGRQAAFQIQTHESALPWDDHRPRVT----------WRGD 203
Query: 185 GKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRK 244
G++FA +S C + K ++VW R+ LQ++SE +G L W PSG+ IA+ ++
Sbjct: 204 GQFFA-VSVVCPETGARK-VRVWNREFA-LQSTSEPVPGLGPALAWKPSGSLIASTQNKP 260
Query: 245 SENKCPSIVFYERNGLERSSFDINEQIDST-VELLKWNCMSDLLAAVVRF--EEYDSV-- 299
++ +VF+E+NGL F + D V L WN S +LA + E DSV
Sbjct: 261 NQQ---DVVFFEKNGLLHGQFTLPFLKDEVKVNDLLWNADSSVLAVWLEDLQREEDSVLK 317
Query: 300 ---KICFFSNNHWYLKYEI---RYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTT 353
++ N HWYL + Y + + MW P P +L Y++ WTT
Sbjct: 318 TYVQLWTVGNYHWYLNECLPFSTYGKSKIVSLMWDPVIPYRLHVLCQGWHYLCYDWRWTT 377
Query: 354 --AVMENSTAL----VIDGSKILVTXXXXXXXXXXXXXXXXKFPTAVTEMAFYSKSSK-N 406
+ +N + L VIDG++ILVT P V ++ F + K N
Sbjct: 378 DRSSGDNESDLANVAVIDGNRILVTVFQQTVVPPPMCTYRLLLPHPVNQVTFCALPKKSN 437
Query: 407 CLAAI 411
LA +
Sbjct: 438 DLAVL 442
Score = 79 (32.9 bits), Expect = 1.7e-80, Sum P(4) = 1.7e-80
Identities = 18/80 (22%), Positives = 42/80 (52%)
Query: 78 ITAFDYLMEKEALIVGTSSGLLLLHSVDGNATXXXXXXXXXXXFISPSPDGDLLGVTTGF 137
I L+++E++ + T+SG ++L ++ + +S SPD +L+ + TG
Sbjct: 71 IVGIQDLLDQESVCIATASGDVILCNLSTHQLECVGSVASGISVMSWSPDQELVLLATGQ 130
Query: 138 GQILVMTHDWDLLYENPLEE 157
+++MT D++ + E + +
Sbjct: 131 QTLIMMTKDFEPIMEQQIHQ 150
>RGD|620072 [details] [associations]
symbol:Ikbkap "inhibitor of kappa light polypeptide gene enhancer
in B-cells, kinase complex-associated protein" species:10116
"Rattus norvegicus" [GO:0004672 "protein kinase activity"
evidence=IDA] [GO:0005524 "ATP binding" evidence=IDA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO;ISS] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=ISO;ISS] [GO:0006368 "transcription elongation from RNA
polymerase II promoter" evidence=ISO] [GO:0007252 "I-kappaB
phosphorylation" evidence=IDA] [GO:0008023 "transcription
elongation factor complex" evidence=ISO;ISS] [GO:0008607
"phosphorylase kinase regulator activity" evidence=ISO;ISS]
[GO:0016591 "DNA-directed RNA polymerase II, holoenzyme"
evidence=ISO] [GO:0030335 "positive regulation of cell migration"
evidence=ISO;ISS] [GO:0033588 "Elongator holoenzyme complex"
evidence=ISO;ISS] [GO:0003677 "DNA binding" evidence=ISO]
RGD:620072 Pfam:PF04762 GO:GO:0005524 GO:GO:0005737 GO:GO:0005730
GO:GO:0003677 Gene3D:2.120.10.30 InterPro:IPR011042 GO:GO:0008607
GO:GO:0006357 GO:GO:0004672 GO:GO:0030335 GO:GO:0006368
GO:GO:0016591 GO:GO:0008023 eggNOG:COG5290 KO:K11373 GO:GO:0033588
InterPro:IPR006849 PANTHER:PTHR12747 PIRSF:PIRSF017233 CTD:8518
HOVERGEN:HBG019038 OrthoDB:EOG4KPT90 GO:GO:0007252
HOGENOM:HOG000007712 EMBL:AF388201 IPI:IPI00389755
RefSeq:NP_543175.1 UniGene:Rn.162816 ProteinModelPortal:Q8VHU4
STRING:Q8VHU4 PRIDE:Q8VHU4 GeneID:140934 KEGG:rno:140934
InParanoid:Q8VHU4 NextBio:620811 ArrayExpress:Q8VHU4
Genevestigator:Q8VHU4 Uniprot:Q8VHU4
Length = 1331
Score = 469 (170.2 bits), Expect = 7.0e-79, Sum P(4) = 7.0e-79
Identities = 142/469 (30%), Positives = 219/469 (46%)
Query: 811 KVSSVLLAIRKALEEKVPESPSRELC--ILTTLARSDPPALEEALERIKIIRETELLGSD 868
KV + A+R A+E P R+ C ILT+ + P L+ L+++ EL G
Sbjct: 814 KVDLICDAMRVAMETINP----RKFCLSILTSHVKKTTPELDIVLQKVH-----ELQGKI 864
Query: 869 EPRRMSYPSAEEALKHLLWLADSEAVYEAALGLYDLNLAAIVALNSQRDPKEFLPYLQEL 928
P SAEEALK+LL L D ++ +LG YD +L +VA SQ+DPKE+LP+L L
Sbjct: 865 -PFVPESVSAEEALKYLLLLVDVNELFNHSLGTYDFDLVLMVAEKSQKDPKEYLPFLNTL 923
Query: 929 ESMPPLLMRYTIDLRLQRFENALKHIVSMGDSYHADCLNLMKKYAQLFPLGLKLIT-DPA 987
+ M R+TID L+R+E AL H+ G Y +CLNL+K L+ LKL D
Sbjct: 924 KKMETNYQRFTIDKYLKRYEKALGHLSKCGPEYFTECLNLIKD-KNLYKEALKLYRPDSP 982
Query: 988 KMEQVLEAWADHLSDVKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKD 1047
+ + V A+ +HL +E A + C + EKA++A+ A G+W L +A L++ KD
Sbjct: 983 QYQAVSVAYGEHLVQELLYEPAGLVFARCGAHEKALEAFLACGSWQQALCMAAQLQMAKD 1042
Query: 1048 EVAKXXXXXXXXXXXXGKPGEAAKIALDYCGDVTNGISLLIDARDWEEALRVAFMHRRED 1107
+VA K EAA + Y D + LL++ WEEALR+ + + R D
Sbjct: 1043 KVAGLARTLAGKLVEQRKHSEAATVLEQYALDYEEAVLLLLEGSAWEEALRLVYKYDRVD 1102
Query: 1108 LI-TKVKHASLECASSLIGEYKEGLEKVGKYLTRYXXXXXXXXXXXXXXXSEDRSMNDLD 1166
+I T VK + LE + + ++ R + + + +
Sbjct: 1103 IIETSVKPSILEAQKNYMDFLDSQTATFIRHKNRLKVVRELKSQRPRVHVDHEVA-HGRE 1161
Query: 1167 DDTVSETSSTFSGMSVYXXXXXXXXXXXXXXXXXXXXXXRESKRQRNRGKIRPGSPGEEM 1226
D SETSS SG + K +R + ++ GSP E +
Sbjct: 1162 TDLFSETSSIRSGSEM------SGRYSHSNSRISARSSKNRRKAERKKHSLKEGSPLEGL 1215
Query: 1227 ALVDHLKGMSLTVGA-KQELKSLVVFLVMLGEVDTARKLQDTGE-TFQL 1273
AL++ L + ++ K E+ +++ L + + AR+LQ E T QL
Sbjct: 1216 ALLEALSEVVQSIEKLKDEVHAILKVLFLFEFEEQARELQRAFESTLQL 1264
Score = 228 (85.3 bits), Expect = 7.0e-79, Sum P(4) = 7.0e-79
Identities = 77/264 (29%), Positives = 125/264 (47%)
Query: 133 VTTGFGQILVMTHDWD---LLYENPLEELAEGFDVHEPELXXXXXXXXXXXWRGDGKYFA 189
+T G+G H + + + + E A +D H P++ WRGDG++FA
Sbjct: 159 ITVGWGSKDTQFHGSEGRPITFPVQMHESALSWDDHRPQIT----------WRGDGQFFA 208
Query: 190 TLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKC 249
+S C+ + K ++VW R+ LQ++SE +G L W PSG+ IA+ D+ ++
Sbjct: 209 -VSVVCSQTGARK-IRVWNREFA-LQSTSESVPGLGPSLAWKPSGSLIASTQDKPNQQ-- 263
Query: 250 PSIVFYERNGLERSSFDINEQIDST-VELLKWNCMSDLLAAVVRF--EEYDS-----VKI 301
+VF+E+NGL F + D V L WN S +LA + +E S V++
Sbjct: 264 -DVVFFEKNGLLHGYFTLPFLKDEVKVNDLLWNADSSVLAVWLEDLPKEGSSTLKSYVQL 322
Query: 302 CFFSNNHWYLKYEIRYL---RRDGIRFMWHPTKP--LQLIC--WTLDGQITTYNFIWTTA 354
N HWYLK + + + + +W P P L ++C W + ++ WTT
Sbjct: 323 WTVGNYHWYLKQSLPFSTTGKNQIVSLLWDPVTPGRLHVLCQGW----RYLCCDWHWTTD 378
Query: 355 VMENSTA------LVIDGSKILVT 372
++A VIDG+K+LVT
Sbjct: 379 RSSGNSADDLANVAVIDGNKVLVT 402
Score = 192 (72.6 bits), Expect = 7.0e-79, Sum P(4) = 7.0e-79
Identities = 69/272 (25%), Positives = 131/272 (48%)
Query: 515 VSTQIPLEGLVIAIAPNNAKKYSAFLQFHGGKISEYMSRVGLTGGALTHDDAS----FPS 570
VS+ + ++G+VI + + K SA +Q G++ +Y+ + + F
Sbjct: 546 VSSSVTVDGVVIGLCCCSKTKSSA-VQLADGQVLKYLWESPSSAVEPWKNSEGRPVRFAR 604
Query: 571 SCPWMNVVSVGTNGPLKPLLFGLDDGGRLHVSGKIVCNNCSSFSFYSKSAGQAMSHLILA 630
C M ++G G + + GL D R ++ V +N +SF+ L++
Sbjct: 605 PCTQMEAAAIG--G--EECVLGLTDRCRFFINDTEVASNITSFAVCD-------DFLLVT 653
Query: 631 TKQNLLFIVDISDILHGELALKYENFTHVGNRRKEENISYINIWERGAKVIGVLHGDEAA 690
T + +S +LK G++ I + ERG++++ V+ D
Sbjct: 654 THSHTCQCFSLSGA-----SLKMLQAGLCGSQVPSGEI--LRKVERGSRIVTVVPQD-TK 705
Query: 691 VILQTNRGNLECMYPRKLVLTSIVNALIQGRFRDALVMVRRHRINFNVIVDHCGWQAFLQ 750
+ILQ RGNLE ++ R LVL I L + F++A +R+ RIN N+I DH + FL+
Sbjct: 706 LILQMPRGNLEVVHHRALVLAQIRKWLDKLMFKEAFECMRKLRINLNLIHDH-NPKVFLE 764
Query: 751 SASEFVRQVNNLSYITEFVCAINNENITETLY 782
+ F++Q+++++++ F + E++T+T+Y
Sbjct: 765 NVETFIKQIDSVNHLNLFFTELKEEDVTKTMY 796
Score = 190 (71.9 bits), Expect = 1.1e-78, Sum P(4) = 1.1e-78
Identities = 56/184 (30%), Positives = 99/184 (53%)
Query: 675 ERGAKVIGVLHGDEAAVILQTNRGNLECMYPRKLVLTSIVNALIQGRFRDALVMVRRHRI 734
ERG++++ V+ D +ILQ RGNLE ++ R LVL I L + F++A +R+ RI
Sbjct: 691 ERGSRIVTVVPQD-TKLILQMPRGNLEVVHHRALVLAQIRKWLDKLMFKEAFECMRKLRI 749
Query: 735 NFNVIVDHCGWQAFLQSASEFVRQVNNLSYITEFVCAINNENITETLYKKFQFLSLPCRE 794
N N+I DH + FL++ F++Q+++++++ F + E++T+T+Y P +
Sbjct: 750 NLNLIHDH-NPKVFLENVETFIKQIDSVNHLNLFFTELKEEDVTKTMYPP------PVTK 802
Query: 795 EFKDLPAKDFKASECNKVSSVLLAIRKALEEKVPESPSRELC--ILTTLARSDPPALEEA 852
+ D K KV + A+R A+E P R+ C ILT+ + P L+
Sbjct: 803 SVQVSTNPDGK-----KVDLICDAMRVAMETINP----RKFCLSILTSHVKKTTPELDIV 853
Query: 853 LERI 856
L+++
Sbjct: 854 LQKV 857
Score = 99 (39.9 bits), Expect = 7.0e-79, Sum P(4) = 7.0e-79
Identities = 40/164 (24%), Positives = 72/164 (43%)
Query: 1 MNNLKLCAEVPLNLELQSKDEILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIK 60
M NLKL + ++Q+ + F L EQ + S L+ + +K
Sbjct: 1 MRNLKLHQTLEFR-DIQAPGKPQCF-CLRAEQGTVLIGSERG------LTEVDPVKKEVK 52
Query: 61 TAISAEIEHIDLEPGDS-ITAFDYLMEKEALIVGTSSGLLLLHSVDGNATXXXXXXXXXX 119
T IS E E G I L+++E++ V T+SG +++ +V
Sbjct: 53 TEISLVAEGFLPEDGSGCIVGIQDLLDQESVCVATASGDVIVCNVSTQQLECVGNVASGI 112
Query: 120 XFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPL--EELAEG 161
+S SPD +LL + T +++MT D++++ E + ++ EG
Sbjct: 113 SVMSWSPDQELLLLATAQQTLIMMTRDYEVITEQQIHQDDFGEG 156
Score = 38 (18.4 bits), Expect = 1.1e-38, Sum P(2) = 1.1e-38
Identities = 12/53 (22%), Positives = 23/53 (43%)
Query: 661 NRRKEENISYINIWERGAKVIGVLHGDEAAVILQTNRGNLECMYPRKLVLTSI 713
N + + + + +I G L ++ V++ + RG E +K V T I
Sbjct: 3 NLKLHQTLEFRDIQAPGKPQCFCLRAEQGTVLIGSERGLTEVDPVKKEVKTEI 55
>DICTYBASE|DDB_G0284075 [details] [associations]
symbol:elp1 "elongation protein 1" species:44689
"Dictyostelium discoideum" [GO:0016591 "DNA-directed RNA polymerase
II, holoenzyme" evidence=ISS] [GO:0016573 "histone acetylation"
evidence=ISS] [GO:0008023 "transcription elongation factor complex"
evidence=ISS] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=ISS] [GO:0004402 "histone
acetyltransferase activity" evidence=ISS] dictyBase:DDB_G0284075
Pfam:PF04762 GenomeReviews:CM000153_GR Gene3D:2.120.10.30
InterPro:IPR011042 GO:GO:0006357 EMBL:AAFI02000063 GO:GO:0016591
GO:GO:0004402 GO:GO:0008023 eggNOG:COG5290 KO:K11373 OMA:HPVNQVT
InterPro:IPR006849 PANTHER:PTHR12747 PIRSF:PIRSF017233
RefSeq:XP_638731.1 ProteinModelPortal:Q54Q66 STRING:Q54Q66
EnsemblProtists:DDB0231757 GeneID:8624401 KEGG:ddi:DDB_G0284075
InParanoid:Q54Q66 ProtClustDB:CLSZ2430296 Uniprot:Q54Q66
Length = 1390
Score = 588 (212.0 bits), Expect = 5.7e-73, Sum P(2) = 5.7e-73
Identities = 169/595 (28%), Positives = 300/595 (50%)
Query: 568 FPSSCPWMNVVSVGTNGPLKPLLFGLDDGGRLHVSGKIVCNNCSSFSFYSKSA-GQAMSH 626
FP+ CPW + ++ + GL+D +L+++ ++C +C+SF+ ++K +SH
Sbjct: 587 FPTPCPWFSSCTINQEDSV----VGLNDRNKLYINQSLLCTDCNSFALHNKFLLFTTVSH 642
Query: 627 LILATKQNLLFIVDISDILHGELALKYENFTHVGNRRKEENISY---INIWERGAKVIGV 683
++ + +LL + + ++ N+ ++ ++ +Y I ERG++++ V
Sbjct: 643 VLRSV--SLLAPPPTQPLTYVPVSNVIGNYVGHKSQALQQQSNYDDSIRDVERGSRIVAV 700
Query: 684 LHGDEAAVILQTNRGNLECMYPRKLVLTSIVNALIQGRFRDALVMVRRHRINFNVIVDHC 743
+ D ++LQ RGNLE + PR L L +I + ++ A + +RR+RI+ N I DH
Sbjct: 701 VPHD-TRLVLQMPRGNLEAISPRSLTLATIREMINNHQYLSAFLTMRRNRIDMNFIYDHN 759
Query: 744 GWQAFLQSASEFVRQVNNLSYITEFVCAINNENITETLYKKFQFLSLPCREEFKDLPAKD 803
F++ EFV Q+ + Y+ F+ ++ +E+ T+TL F+ L + P
Sbjct: 760 PTD-FIRHIEEFVDQIQQIDYLNLFISSLRDEDTTKTL-----FIDLETKHLLP--PTNV 811
Query: 804 FKASEC--NKVSSVLLAIRKALEEKVPESPSRELCILTTLARSDPPALEEALERIKIIRE 861
K S KV+ V ++RK EK +S L ILTT + PP L++ L I+ +R
Sbjct: 812 VKPSSIVVGKVNLVCDSLRKVFMEK--DSIKFNLPILTTYVKKSPPELDQVLRLIQSLRG 869
Query: 862 TELLGSDEPRRMSYPSAEEALKHLLWLADSEAVYEAALGLYDLNLAAIVALNSQRDPKEF 921
E+ +++ + AEE+L ++++L D +Y+ ALG YD L +VA SQ+DPKE+
Sbjct: 870 EEI--NEQGETIVNRLAEESLDYIVFLVDVNKLYDIALGTYDFELVIMVAQKSQKDPKEY 927
Query: 922 LPYLQELESMPPLLMRYTIDLRLQRFENALKHIVSMGDSYHADCLNLM---KKYAQ-LFP 977
+P+LQEL+ M RY+ID L R+E AL ++ G Y DCL+L+ K Y + L
Sbjct: 928 IPFLQELQKMEKFYQRYSIDKYLSRWELALYNLSRAGKKYQQDCLDLIISNKIYKEALVN 987
Query: 978 LGLK-------LITDPAKM-EQVLEAWADHLSDVKCFEDAATTYFCCSSLEKAMKAYRAS 1029
G LI + +M ++VL + D+L + FEDAA + + +K++ A+R +
Sbjct: 988 YGGSAADSDDNLIEEKDEMFKKVLNIYGDYLLESNQFEDAAYLFLQANQEKKSINAFRDA 1047
Query: 1030 GNWSGVLTVAGLLKLGKDEVAKXXXXXXXXXXXXGKPGEAAKIALDYCGDVTNGISLLID 1089
G W ++ A L K+++ + K +AA+ L+ + I + +
Sbjct: 1048 GLWENAISQANKLSYTKEQLNQLVIELSEILKRNSKFQQAAQ-CLEKFQLIDQAIHMYCE 1106
Query: 1090 ARDWEEALRVAFM----HRREDLITKVKHASLECASSLIGEYKEGLEKVGKYLTR 1140
+ EAL ++ ++ E+ K+K + L+ S+ I E EK K TR
Sbjct: 1107 GYYFNEALLLSSSSSSSNQEEEQQIKIKKSLLDSLSNQINEINNNFEKYEKMSTR 1161
Score = 241 (89.9 bits), Expect = 5.7e-73, Sum P(2) = 5.7e-73
Identities = 91/397 (22%), Positives = 175/397 (44%)
Query: 1 MNNLKLCAEVPLNLELQSKDEILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIK 60
M N+ +E +L + + FS +D + N ++F + NN QL + +
Sbjct: 1 MKNITRLSEFN-DLIVDGNGDFKLFS-IDQQSNVVYFITE-NN----QLIIYSPSTKKVS 53
Query: 61 TAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATXXXXXXXXXXX 120
I + + I L G + + ++ + +A+ + ++ G +L++S
Sbjct: 54 MRIELDEQDI-LSEGAKVISIQFIPDLDAVCMASNKGDILMYSTSNGELECVGIIGSGIT 112
Query: 121 FISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELXXXXXXXXXX- 179
+S SPD +L + T ++ MT DW+++ E + G +P+
Sbjct: 113 CMSWSPDYELFILATESETLIQMTKDWEMINEVSINSYLPG----KPKTATTTTNNNNSK 168
Query: 180 --------XWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAF-MGAVLEW 230
WRGDG+YFA S + K+ +L++WER S L + +E + + W
Sbjct: 169 NINKIPIITWRGDGQYFACSSYEEDIGKI--QLRIWER-SLQLHSMNESDVTGLENQISW 225
Query: 231 MPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAV 290
P+G+ IA ++ E I F+ERNGL+ F + + ++ ++W+ S++L
Sbjct: 226 RPNGSMIAV--SQRLEQTRHDISFFERNGLKHGEFTLRSK--GEIQSIQWSSDSEILGIQ 281
Query: 291 VRFE-EYDSV-KICFFSNNHWYLKYEIRYLRRDG-------IRFMWHPTKPLQLICWTLD 341
+ E E SV ++ SN +W+LK EI+ + + W + P+ + T
Sbjct: 282 LYLEDEKRSVLQLWHRSNYYWFLKQEIQCGDSNNNNTNERIVNIQWDLSSPIVRVL-TQI 340
Query: 342 GQITTYNFIWTTAVMENS------TALVIDGSKILVT 372
G+ + Y W V + S T +++DG+++ +T
Sbjct: 341 GRFSEYRLCWDYDVSQGSSENNPTTVVMVDGNQLKLT 377
Score = 141 (54.7 bits), Expect = 7.4e-25, Sum P(2) = 7.4e-25
Identities = 76/350 (21%), Positives = 137/350 (39%)
Query: 990 EQVLEAWADHLSDVKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEV 1049
++VL + D+L + FEDAA + + +K++ A+R +G W ++ A L K+++
Sbjct: 1008 KKVLNIYGDYLLESNQFEDAAYLFLQANQEKKSINAFRDAGLWENAISQANKLSYTKEQL 1067
Query: 1050 AKXXXXXXXXXXXXGKPGEAAKIA-----LD-----YCGDVTNGISLLIDARDWEEALRV 1099
+ K +AA+ +D YC +LL+ +
Sbjct: 1068 NQLVIELSEILKRNSKFQQAAQCLEKFQLIDQAIHMYCEGYYFNEALLLSSSS------- 1120
Query: 1100 AFMHRREDLITKVKHASLECASSLIGEYKEGLEKVGKYLTRYXXXXXXXXXXXXXXXSED 1159
+ ++ E+ K+K + L+ S+ I E EK K TR
Sbjct: 1121 SSSNQEEEQQIKIKKSLLDSLSNQINEINNNFEKYEKMSTRIVIVRTNKLNYVPLLLP-- 1178
Query: 1160 RSMNDLDDDTV-SETSSTFS--GMSVYXXXXXXXXXXXXXXXX------XXXXXXRESKR 1210
R D + ++ S S FS GMSV R K+
Sbjct: 1179 RGQGDFETGSMMSGMSGMFSEGGMSVNSALSNVTTSSYVSTYSQQTGTFSTATKTRLKKK 1238
Query: 1211 QRNRG--KIR----PGSPGEEMALVDHLKGMSLTVGAKQELKSLVVFLVMLGEVDTARKL 1264
+ + K+R GSP EE LVD +K + + ++ + ++ LV+LG + AR+L
Sbjct: 1239 DKKQKPQKVRITGKEGSPYEEDYLVDQMKKLIPSSSQQESIGRIIKGLVLLGLFNDARQL 1298
Query: 1265 QDTGETF-QLSQMAAIKLAEDTMSIDIINEHAHNMERYVQIVKLESQNSE 1313
+ + L + L+ +I N+ E+ +Q+ +LE Q +
Sbjct: 1299 STLYQKYLNLIDSSLDDLSASATAILPENKKEKEREQRLQLEQLEEQQQQ 1348
>UNIPROTKB|F5H2T0 [details] [associations]
symbol:IKBKAP "Elongator complex protein 1" species:9606
"Homo sapiens" [GO:0030335 "positive regulation of cell migration"
evidence=IEA] Pfam:PF04762 GO:GO:0005524 GO:GO:0004672
EMBL:AL359692 EMBL:AL354797 InterPro:IPR006849 PANTHER:PTHR12747
HGNC:HGNC:5959 GO:GO:0007252 IPI:IPI00981273
ProteinModelPortal:F5H2T0 SMR:F5H2T0 Ensembl:ENST00000537196
ArrayExpress:F5H2T0 Bgee:F5H2T0 Uniprot:F5H2T0
Length = 983
Score = 478 (173.3 bits), Expect = 2.2e-64, Sum P(3) = 2.2e-64
Identities = 141/471 (29%), Positives = 216/471 (45%)
Query: 810 NKVSSVLLAIRKALEEKVPESPSRELCILTTLARSDPPALEEALERIKIIRETELLGSDE 869
NK+ V A+R +E P L ILT+ + P LE L+++ EL G+
Sbjct: 465 NKIDLVCDAMRAVMESINPHKYC--LSILTSHVKKTTPELEIVLQKVH-----ELQGN-A 516
Query: 870 PRRMSYPSAEEALKHLLWLADSEAVYEAALGLYDLNLAAIVALNSQRDPKEFLPYLQELE 929
P SAEEALK+LL L D +Y+ +LG YD +L +VA SQ+DPKE+LP+L L+
Sbjct: 517 PSDPDAVSAEEALKYLLHLVDVNELYDHSLGTYDFDLVLMVAEKSQKDPKEYLPFLNTLK 576
Query: 930 SMPPLLMRYTIDLRLQRFENALKHIVSMGDSYHADCLNLMKKYAQLFPLGLKLITDPAKM 989
M R+TID L+R+E A+ H+ G Y +CLNL+K L+ LKL + ++
Sbjct: 577 KMETNYQRFTIDKYLKRYEKAIGHLSKCGPEYFPECLNLIKD-KNLYNEALKLYSPSSQQ 635
Query: 990 EQVLE-AWADHLSDVKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDE 1048
Q + A+ +HL +E A + C + EKA+ A+ GNW L VA L KD+
Sbjct: 636 YQDISIAYGEHLMQEHMYEPAGLMFARCGAHEKALSAFLTCGNWKQALCVAAQLNFTKDQ 695
Query: 1049 VAKXXXXXXXXXXXXGKPGEAAKIALDYCG-DVTNGISLLIDARDWEEALRVAFMHRRED 1107
+ K +AA + L+ C D + LL++ WEEALR+ + + R D
Sbjct: 696 LVGLGRTLAGKLVEQRKHIDAAMV-LEECAQDYEEAVLLLLEGAAWEEALRLVYKYNRLD 754
Query: 1108 LI-TKVKHASLECASSLIGEYKEGLEKVGKYLTRYXXXXXXXXXXXXXXXSEDRSMNDLD 1166
+I T VK + LE + + ++ R +D + +
Sbjct: 755 IIETNVKPSILEAQKNYMAFLDSQTATFSRHKKRLLVVRELKEQAQQAGL-DDEVPHGQE 813
Query: 1167 DDTVSETSSTFSGMSVYXXXXXXXXXXXXXXXXXXXXXXRESKRQRNRGKIRPGSPGEEM 1226
D SETSS SG + K +R + ++ GSP E++
Sbjct: 814 SDLFSETSSVVSGSEM------SGKYSHSNSRISARSSKNRRKAERKKHSLKEGSPLEDL 867
Query: 1227 ALVDHLKGM-SLTVGAKQELKSLVVFLVMLGEVDTARKLQDTGE-TFQLSQ 1275
AL++ L + T K E+ ++ L + + R+LQ E T QL +
Sbjct: 868 ALLEALSEVVQNTENLKDEVYHILKVLFLFEFDEQGRELQKAFEDTLQLME 918
Score = 227 (85.0 bits), Expect = 2.2e-64, Sum P(3) = 2.2e-64
Identities = 88/343 (25%), Positives = 157/343 (45%)
Query: 515 VSTQIPLEGLVIAIAPNNAKKYSAFLQFHGGKISEYMSRVGLTGGALTHDDASFPSSCPW 574
VS+ ++G++I++ N+ K S LQ G+I +Y+ + FP P+
Sbjct: 198 VSSSAAVDGVIISLCCNSKTK-SVVLQLADGQIFKYLWESPSLAIKPWKNSGGFPVRFPY 256
Query: 575 -MNVVSVGTNGPLKPLLFGLDDGGRLHVSGKIVCNNCSSFSFYSKSAGQAMSHLILATKQ 633
+ G + +L GL D R ++ V +N +SF+ Y + L+L T
Sbjct: 257 PCTQTELAMIGEEECVL-GLTDRCRFFINDIEVASNITSFAVYDE-------FLLLTTHS 308
Query: 634 NLLFIVDISDILHGELALKYENFTHVGNRRKEENISYINIWERGAKVIGVLHGDEAAVIL 693
+ + D L + HV + + ERG++++ V+ D ++L
Sbjct: 309 HTCQCFCLRDASFKTLQAGLSS-NHVSHGEVLRKV------ERGSRIVTVVPQD-TKLVL 360
Query: 694 QTNRGNLECMYPRKLVLTSIVNALIQGRFRDALVMVRRHRINFNVIVDHCGWQAFLQSAS 753
Q RGNLE ++ R LVL I L + F++A +R+ RIN N+I DH + FL +
Sbjct: 361 QMPRGNLEVVHHRALVLAQIRKWLDKLMFKEAFECMRKLRINLNLIYDH-NPKVFLGNVE 419
Query: 754 EFVRQVNNLSYITEFVCAINNENITETLYKKFQFLSLPCREEFKDLPAKDFKASECNKVS 813
F++Q++++++I F + E++T+T+Y P ++D + NK+
Sbjct: 420 TFIKQIDSVNHINLFFTELKEEDVTKTMY--------PAPVTSSVYLSRD---PDGNKID 468
Query: 814 SVLLAIRKALEEKVPESPSRELCILTTLARSDPPALEEALERI 856
V A+R +E P L ILT+ + P LE L+++
Sbjct: 469 LVCDAMRAVMESINPHKYC--LSILTSHVKKTTPELEIVLQKV 509
Score = 88 (36.0 bits), Expect = 2.2e-64, Sum P(3) = 2.2e-64
Identities = 32/111 (28%), Positives = 48/111 (43%)
Query: 326 MWHPTKPLQLICWTLDGQITTYNFIWTT--AVMENSTAL----VIDGSKILVTXXXXXXX 379
MW P P +L Y++ WTT +V +NS+ L VIDG+++LVT
Sbjct: 1 MWDPVTPYRLHVLCQGWHYLAYDWHWTTDRSVGDNSSDLSNVAVIDGNRVLVTVFRQTVV 60
Query: 380 XXXXXXXXXKFPTAVTEMAFYSKSSK-NCLAAILSDGCLCVV---DLPAPD 426
FP V ++ F + K N LA + + + V D P+ D
Sbjct: 61 PPPMCTYQLLFPHPVNQVTFLAHPQKSNDLAVLDASNQISVYKCGDCPSAD 111
Score = 37 (18.1 bits), Expect = 4.7e-59, Sum P(3) = 4.7e-59
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 323 IRFMWHPTKPLQLICWTLDGQITTY 347
+ F+ HP K L QI+ Y
Sbjct: 78 VTFLAHPQKSNDLAVLDASNQISVY 102
>SGD|S000004376 [details] [associations]
symbol:IKI3 "Subunit of Elongator complex" species:4932
"Saccharomyces cerevisiae" [GO:0033588 "Elongator holoenzyme
complex" evidence=IDA] [GO:0002098 "tRNA wobble uridine
modification" evidence=IMP] [GO:0015031 "protein transport"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006810 "transport" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0003674 "molecular_function" evidence=ND]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IMP] InterPro:IPR015943 SGD:S000004376
Pfam:PF04762 GO:GO:0005634 GO:GO:0005737 Gene3D:2.130.10.10
GO:GO:0015031 GO:GO:0006357 GO:GO:0006351 EMBL:BK006945
GO:GO:0002098 EMBL:U19104 eggNOG:COG5290 KO:K11373 OMA:HPVNQVT
GO:GO:0033588 InterPro:IPR006849 PANTHER:PTHR12747
PIRSF:PIRSF017233 GeneTree:ENSGT00390000013344 HOGENOM:HOG000188454
OrthoDB:EOG4578G4 EMBL:D87841 PIR:S51471 RefSeq:NP_013488.3
RefSeq:NP_013490.3 ProteinModelPortal:Q06706 SMR:Q06706
DIP:DIP-2384N IntAct:Q06706 MINT:MINT-567397 STRING:Q06706
PaxDb:Q06706 PeptideAtlas:Q06706 EnsemblFungi:YLR384C GeneID:851100
GeneID:851102 KEGG:sce:YLR384C KEGG:sce:YLR386W CYGD:YLR384c
KO:K15305 NextBio:967788 Genevestigator:Q06706 GermOnline:YLR384C
Uniprot:Q06706
Length = 1349
Score = 499 (180.7 bits), Expect = 4.1e-62, Sum P(2) = 4.1e-62
Identities = 156/571 (27%), Positives = 269/571 (47%)
Query: 675 ERGAKVIGVLHGDEAAVILQTNRGNLECMYPRKLVLTSIVNALIQGRFRDALVMVRRHRI 734
ERG+ ++ V+ +++V+LQ RGNLE +YPR +VL + ++ R+++A ++ R HRI
Sbjct: 712 ERGSILVSVIPS-KSSVVLQATRGNLETIYPRIMVLAEVRKNIMAKRYKEAFIVCRTHRI 770
Query: 735 NFNVIVDHCGWQAFLQSASEFVRQVNNLSYITEFVCAINNENIT-----ETLY----KKF 785
N +++ D+ + F+++ F+ Q+ + Y+ F+ ++ +++T ETLY K F
Sbjct: 771 NLDILHDYAP-ELFIENLEVFINQIGRVDYLNLFISCLSEDDVTKTKYKETLYSGISKSF 829
Query: 786 QFLSLPCREEFKDLPAKDF--KASECNKVSSVLLAIRKALEEKVPESPSREL-CILTTLA 842
P E + K F K S+ NK+ +L + L PE + L I+T A
Sbjct: 830 GMEPAPLTEMQIYMKKKMFDPKTSKVNKICDAVLNV--LLSN--PEYKKKYLQTIITAYA 885
Query: 843 RSDPPALEEALERIKIIRETELLGSDEPRRMSYPSAEEALKHLLWLADSEAVYEAALGLY 902
+P L AL K+I E E S+E + + +L +L D VY++AL LY
Sbjct: 886 SQNPQNLSAAL---KLISELE--NSEEK--------DSCVTYLCFLQDVNVVYKSALSLY 932
Query: 903 DLNLAAIVALNSQRDPKEFLPYLQELESMPPLLMRYTIDLRLQRFENALKHI--VSMGDS 960
D++LA +VA SQ DP+E+LP+LQEL+ PL ++ ID L +E AL+H+ + +
Sbjct: 933 DVSLALLVAQKSQMDPREYLPFLQELQDNEPLRRKFLIDDYLGNYEKALEHLSEIDKDGN 992
Query: 961 YHADCLNLMKKYAQLFPLGLKLIT-DPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSSL 1019
+ ++ ++ + L+ GL L D K + +A HLS + + DAA Y L
Sbjct: 993 VSEEVIDYVESH-DLYKHGLALYRYDSEKQNVIYNIYAKHLSSNQMYTDAAVAYEMLGKL 1051
Query: 1020 EKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKXXXXXXXXXXXXGKPGEAAKIALDYCGD 1079
++AM AY+++ W +++A ++ +EV + +AA I L+Y +
Sbjct: 1052 KEAMGAYQSAKRWREAMSIA--VQKFPEEVESVAEELISSLTFEHRYVDAADIQLEYLDN 1109
Query: 1080 VTNGISLLIDARDWEEALRVAFMHRREDLITKVKHASLECASSLIGEYKEGLE-KVGKYL 1138
V ++L A ++ A VA ++++L+ +V L +I E + ++ L
Sbjct: 1110 VKEAVALYCKAYRYDIASLVAIKAKKDELLEEVVDPGLGEGFGIIAELLADCKGQINSQL 1169
Query: 1139 TRYXXXXXXXXXXXXXXXSEDRSMNDLDDDTVSETSSTFSGMSVYXXXXXXXXXXXXXXX 1198
R ++ D SETS+ S + Y
Sbjct: 1170 RRLRELRAKKEENPYAFYGQETEQADDVSVAPSETSTQESFFTRYTGKTGGTAKTGASRR 1229
Query: 1199 XXXXXXXRESKRQRNRGKIRPGSPGEEMALV 1229
R +R+R RGK G+ EE LV
Sbjct: 1230 TAKNK--RREERKRARGK--KGTIYEEEYLV 1256
Score = 230 (86.0 bits), Expect = 4.1e-62, Sum P(2) = 4.1e-62
Identities = 72/239 (30%), Positives = 110/239 (46%)
Query: 150 LYENPLEELAEGFDVHEPELXXXXXXXXXXXWRGDGKYFATLS------EFCNSSKLHKR 203
L N L + + V ++ WRGD YFA S E + + +R
Sbjct: 224 LVGNQLRDPTMPYMVDTGDVTALDSHEITISWRGDCDYFAVSSVEEVPDEDDETKSIKRR 283
Query: 204 -LKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKS---ENKCPSIVFYERNG 259
+V+ R+ G L ++SE M L W P G+ IA++ RK+ E ++F+ERNG
Sbjct: 284 AFRVFSRE-GQLDSASEPVTGMEHQLSWKPQGSLIASI-QRKTDLGEEDSVDVIFFERNG 341
Query: 260 LERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLR 319
L FD +D VE + WN S+ LA V+ + +++ N HWYLK E+ Y
Sbjct: 342 LRHGEFDTRLPLDEKVESVCWNSNSEALAVVLA----NRIQLWTSKNYHWYLKQEL-YAS 396
Query: 320 RDGIRFMWHPTKPLQLICWTLDGQITTYNFIW------TTAVMENSTALVIDGSKILVT 372
D WHP K L+ ++ G I +F + T +N T+LV+DG + +T
Sbjct: 397 -DISYVKWHPEKDFTLM-FSDAGFINIVDFAYKMAQGPTLEPFDNGTSLVVDGRTVNIT 453
Score = 41 (19.5 bits), Expect = 3.1e-42, Sum P(2) = 3.1e-42
Identities = 24/107 (22%), Positives = 43/107 (40%)
Query: 512 HAKVSTQIPLEGLVIAIAPN-NAKKYSAFL----QFHGGKISEYMSRVGLTGGALT---- 562
H + T++PL+ V ++ N N++ + L Q K + + L ++
Sbjct: 344 HGEFDTRLPLDEKVESVCWNSNSEALAVVLANRIQLWTSKNYHWYLKQELYASDISYVKW 403
Query: 563 HDDASFP---SSCPWMNVVSVGTNGPLKPLLFGLDDGGRLHVSGKIV 606
H + F S ++N+V P L D+G L V G+ V
Sbjct: 404 HPEKDFTLMFSDAGFINIVDFAYKMAQGPTLEPFDNGTSLVVDGRTV 450
>UNIPROTKB|Q2TAQ1 [details] [associations]
symbol:ikbkap "Putative elongator complex protein 1"
species:8355 "Xenopus laevis" [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0008023 "transcription elongation
factor complex" evidence=ISS] [GO:0008607 "phosphorylase kinase
regulator activity" evidence=ISS] InterPro:IPR015943 Pfam:PF04762
GO:GO:0005737 Gene3D:2.130.10.10 GO:GO:0008607 GO:GO:0006357
GO:GO:0006351 GO:GO:0008023 KO:K11373 InterPro:IPR006849
PANTHER:PTHR12747 PIRSF:PIRSF017233 CTD:8518 HOVERGEN:HBG019038
EMBL:BC110776 RefSeq:NP_001089940.1 UniGene:Xl.19566 GeneID:735009
KEGG:xla:735009 Xenbase:XB-GENE-5813405 Uniprot:Q2TAQ1
Length = 1170
Score = 456 (165.6 bits), Expect = 3.8e-59, Sum P(2) = 3.8e-59
Identities = 132/465 (28%), Positives = 226/465 (48%)
Query: 805 KASECNKVSSVLLAIRKALEEKVPESPSRELCILTTLARSDPPALEEALERIKIIRETEL 864
+ ++ KV V A+R A+E+ P+ L ILT+ R P LE AL+++ +RE+
Sbjct: 648 EGAKAKKVDIVCDAVRAAMEKWDPQKFC--LSILTSYVRRTIPQLEIALQKVHELRES-- 703
Query: 865 LGSDEPRRMSYPSAEEALKHLLWLADSEAVYEAALGLYDLNLAAIVALNSQRDPKEFLPY 924
P + SA+EALK+LL+L D +Y+ +LG YD +L +VA SQ+DPKE+LP+
Sbjct: 704 -----PST-TIVSADEALKYLLFLVDVNELYDHSLGTYDFDLVVMVAEKSQKDPKEYLPF 757
Query: 925 LQELESMPPLLMRYTIDLRLQRFENALKHIVSMGDSYHADCLNLMKKYAQLFPLGLKLIT 984
L +L+ M RYTID L+R++ AL ++ G Y + L+ +K + L+ L+L
Sbjct: 758 LNKLKKMETNYQRYTIDKHLKRYKKALSNLSKCGPDYFTEFLSFVKDQS-LYTEALELYP 816
Query: 985 D-PAKMEQVLEAWADHLSDVKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLK 1043
+ + + A+ DHL + +E A Y C+S+EKA+ A+ ASGNW V+ +A L+
Sbjct: 817 HGTVEYKAINAAYGDHLVSKQQYELAGLIYARCNSIEKALDAFIASGNWHQVMCMASQLE 876
Query: 1044 LGKDEVAKXXXXXXXXXXXXGKPGEAAKIALDYCGDVTNGISLLIDARDWEEALRVAFMH 1103
+++A K +AA + Y D I LL++ WEEALR+ + +
Sbjct: 877 YSGEKIAALARTVAGKLVEQRKQADAAVLLEQYAEDYEEAILLLLEGAHWEEALRLIYKY 936
Query: 1104 RREDLI-TKVKHASLECASSLIGEYKEGLEKVGKYLTRYXXXXXXXXXXXXXXXSEDRSM 1162
R D++ T +K A L+ + + + ++ R ED +
Sbjct: 937 IRLDILETNLKPALLDAQRNHMILFDNQKTTFTRHKERLSVVREMKEKARLGLLDEDVT- 995
Query: 1163 NDLDDDTVSETSSTFSGMSVYXXXXXXXXXXXXXXXXXXXXXXRESKRQRNRGKIRPGSP 1222
+ D S+TSS + K +R + ++ GSP
Sbjct: 996 GCAEADLFSDTSS------IMTASDASGKYSQSNSRISSRSSKNRRKAERKKHSLKEGSP 1049
Query: 1223 GEEMALVDHL-KGMSLTVGAKQELKSLVVFLVMLGEVDT-ARKLQ 1265
E++AL++ L + + + + ++ +L+ L++ E D A++LQ
Sbjct: 1050 LEDLALLEALAETIQMADKLRGDVHNLLKVLILF-EYDARAKELQ 1093
Score = 273 (101.2 bits), Expect = 2.7e-39, Sum P(2) = 2.7e-39
Identities = 117/430 (27%), Positives = 191/430 (44%)
Query: 475 FRGATLNEDGLLGFYAQEIELACSEDHVQGLLTCAGWHAKVSTQIPLEGLVIAIAPNNAK 534
FR T +D +QE + S H G V + G +I++ +
Sbjct: 346 FRLLTWVQDDTFLAVSQESNSSISTVHHMNTDQMDGQDINVRDVGTITGHIISLCYSPNT 405
Query: 535 KYSAFLQFHGGKISEYMSRVGLTGGALTHDDASFPSSCPWMNVVSVGTNGPLKPLLFGLD 594
K+ A LQ GKI +Y+ D P V + + + ++ GL
Sbjct: 406 KHCA-LQTSNGKIWKYLCEYPTPAVEPWIDSMGQEVKFPQPCVQTALASIEGEDMVIGLT 464
Query: 595 DGGRLHVSGKIVCNNCSSFSFYSKSAGQAMSHLILATKQNLLFIVDISDILHGELALK-Y 653
+ RL ++ V +N +SF Y + L+L T + V + D +LK
Sbjct: 465 ERSRLFINNSEVASNITSFHLYEE-------FLLLTTHSHTCRCVSLRDT-----SLKAL 512
Query: 654 ENFTHVGNRRKEENISYINIWERGAKVIGVLHGDEAAVILQTNRGNLECMYPRKLVLTSI 713
E + + +E I + ERG+++I V+ D +ILQ RGNLE ++ R LVL I
Sbjct: 513 ETQLNSASNPNDETIRKV---ERGSRIITVVPCD-TKLILQMPRGNLETIHHRALVLAQI 568
Query: 714 VNALIQGRFRDALVMVRRHRINFNVIVDHCGWQAFLQSASEFVRQVNNLSYITEFVCAIN 773
L + F++A +R+ RIN N++ DH +AFL + F++Q+ +++YI F+ I
Sbjct: 569 RKWLDRLLFKEAFECMRKLRINLNLLYDH-NPKAFLDNVDLFIKQIGSVNYINLFLTEIK 627
Query: 774 NENITETLYKKFQFLSLPCREEFKDLPAKDFKASECNKVSSVLLAIRKALEEKVPESPSR 833
E++T+T+Y ++ E K AK KV V A+R A+E+ P+
Sbjct: 628 EEDVTKTMYPTHALSTMQSSEGAK---AK--------KVDIVCDAVRAAMEKWDPQKFC- 675
Query: 834 ELCILTTLARSDPPALEEALERIKIIRE---TELLGSDEPRR--MSYPSAEEALKHLLWL 888
L ILT+ R P LE AL+++ +RE T ++ +DE + + E H L
Sbjct: 676 -LSILTSYVRRTIPQLEIALQKVHELRESPSTTIVSADEALKYLLFLVDVNELYDHSLGT 734
Query: 889 ADSEAVYEAA 898
D + V A
Sbjct: 735 YDFDLVVMVA 744
Score = 244 (91.0 bits), Expect = 3.8e-59, Sum P(2) = 3.8e-59
Identities = 78/247 (31%), Positives = 112/247 (45%)
Query: 181 WRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAV 240
WRGDG+ FA +S C S K ++VW R+ LQ++SE + L W PSGA IA+
Sbjct: 51 WRGDGQLFA-VSSVCKESGTRK-IRVWNRELA-LQSTSESIEGLEQALSWKPSGALIAS- 106
Query: 241 YDRKSENKCPSIVFYERNGLERSSFDI---NEQIDSTVELLKWNCMSDLLAAVVRFEEYD 297
+ NK S++F+E+NGL F + QI ELL WN S +LA + E D
Sbjct: 107 -SQSKPNK-HSVIFFEKNGLVHGEFTLPFTKGQI-KVKELL-WNSDSTILAIWLEDNEKD 162
Query: 298 S------VKICFFSNNHWYLKYEIRYLRRDGIR----FMWHPTKPLQLICWTLDGQITTY 347
V++ N HWYLK + + D ++ MW P +L ++ +
Sbjct: 163 ESSSGCCVQLWTVGNYHWYLKQSLNF-GTDEMKKIECLMWDPENAYRLHVFSTGWHYFCF 221
Query: 348 NFIWTTAVMENSTA--LVIDGSKILVTXXXXXXXXXXXXXXXXKFPTAVTEMAFYSKSSK 405
++ W T + VIDG K+LVT + AV E+ F + K
Sbjct: 222 DWFWGTDHSDGGQGDVAVIDGDKVLVTSFQQAVVPPPMSTYFIQLSCAVNEVTFQLEPKK 281
Query: 406 NCLAAIL 412
N AIL
Sbjct: 282 NSGIAIL 288
>FB|FBgn0037926 [details] [associations]
symbol:Elp1 "Elongator complex protein 1" species:7227
"Drosophila melanogaster" [GO:0007165 "signal transduction"
evidence=NAS] [GO:0006952 "defense response" evidence=NAS]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0008607 "phosphorylase kinase regulator
activity" evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0008023 "transcription elongation factor complex" evidence=ISS]
[GO:0016246 "RNA interference" evidence=IMP] Pfam:PF04762
EMBL:AE014297 GO:GO:0005737 GO:GO:0016246 Gene3D:2.120.10.30
InterPro:IPR011042 GO:GO:0008607 GO:GO:0006357 GO:GO:0006351
GO:GO:0008023 eggNOG:COG5290 KO:K11373 OMA:HPVNQVT
InterPro:IPR006849 PANTHER:PTHR12747 PIRSF:PIRSF017233
EMBL:AY119562 RefSeq:NP_650098.1 UniGene:Dm.6629
ProteinModelPortal:Q9VGK7 SMR:Q9VGK7 IntAct:Q9VGK7 MINT:MINT-937484
STRING:Q9VGK7 PaxDb:Q9VGK7 EnsemblMetazoa:FBtr0082420 GeneID:41399
KEGG:dme:Dmel_CG10535 UCSC:CG10535-RA CTD:41399 FlyBase:FBgn0037926
GeneTree:ENSGT00390000013344 InParanoid:Q9VGK7 OrthoDB:EOG4G1JXG
PhylomeDB:Q9VGK7 GenomeRNAi:41399 NextBio:823674 Bgee:Q9VGK7
Uniprot:Q9VGK7
Length = 1252
Score = 337 (123.7 bits), Expect = 1.7e-57, Sum P(5) = 1.7e-57
Identities = 96/370 (25%), Positives = 172/370 (46%)
Query: 878 AEEALKHLLWLADSEAVYEAALGLYDLNLAAIVALNSQRDPKEFLPYLQELESMPPLLMR 937
A++ L+HLL+L D +Y ALG YD L VA SQ+DPKEFLPYL +L+++P +
Sbjct: 803 ADQLLQHLLYLVDVNDLYNVALGTYDFGLVLFVAQKSQKDPKEFLPYLNDLKALPIDYRK 862
Query: 938 YTIDLRLQRFENALKHIVSMGDSYHADCLNLMKKYAQLFPLGLKLITDPAKMEQ-VLEAW 996
+ ID L+R+ +AL H+ + G+ ++ + L ++K+ L+ GL + + ++ + A+
Sbjct: 863 FRIDDHLKRYTSALSHLAACGEQHYEEALEYIRKHG-LYTDGLAFYREHIEFQKNIYVAY 921
Query: 997 ADHLSDVKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKXXXXX 1056
ADHL + ++A+ Y L++A+ + + + +W VL +A L D+VA+
Sbjct: 922 ADHLRAIAKLDNASLMYERGGQLQQALLSAKHTLDWQRVLVLAKKLSEPLDQVAQSLVGP 981
Query: 1057 XXXXXXXGKPGEAAKIALDYCGDVTNGISLLIDARDWEEALRVAFMHRREDLITKVKHAS 1116
G+ EA ++ ++C D +L++ + A+ A + +D+ K+ A
Sbjct: 982 LQQQ---GRHMEAYELVKEHCQDRKRQFDVLLEGHLYSRAIYEAGLED-DDVSEKIAPAL 1037
Query: 1117 LECASSLIGEYKEGLEKVGKYLTRYXXXXXXXXXXXXXXXSEDRSMNDLD--DDTVSETS 1174
L L + L+ Y R D ++ ++D DT S S
Sbjct: 1038 LAYGVQLESSLQADLQLFLDYKQRLLDIRRNQAKSGEGYIDTDVNLKEVDLLSDTTSLHS 1097
Query: 1175 STFSGMSVYXXXXXXXXXXXXXXXXXXXXXXRESKRQRNRGKIRPGSPGEEMALVDHLKG 1234
S +SG S K +R ++PG+P E++AL+D L
Sbjct: 1098 SQYSGTS-------------RRTGKTFRSSKNRRKHERKLFSLKPGNPFEDIALIDALHN 1144
Query: 1235 MSLTVGAKQE 1244
+ +Q+
Sbjct: 1145 HVTKIAQQQQ 1154
Score = 196 (74.1 bits), Expect = 1.7e-57, Sum P(5) = 1.7e-57
Identities = 45/128 (35%), Positives = 77/128 (60%)
Query: 655 NFTHVGNRRKEENISYINIWERGAKVIGVLHGDEAAVILQTNRGNLECMYPRKLVLTSIV 714
+F + +RR+ ++ NI ERGAK++ + +A V+LQ RGNLE + PR LVL +
Sbjct: 611 HFVQLDDRRQ---VASRNI-ERGAKIVTAV-ARKARVVLQLPRGNLEAICPRVLVLELVG 665
Query: 715 NALIQGRFRDALVMVRRHRINFNVIVDHCGWQAFLQSASEFVRQVNNLSYITEFVCAINN 774
+ L +G+++ A+ M R+ RIN N+I DH + F+ S F+ +N ++ F+ + N
Sbjct: 666 DLLERGKYQKAIEMSRKQRINLNIIFDH-DVKRFVSSVGAFLNDINEPQWLCLFLSELQN 724
Query: 775 ENITETLY 782
E+ T+ +Y
Sbjct: 725 EDFTKGMY 732
Score = 177 (67.4 bits), Expect = 1.7e-57, Sum P(5) = 1.7e-57
Identities = 65/229 (28%), Positives = 106/229 (46%)
Query: 181 WRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAV 240
WRGDG++F + +++L + KV++ + G L ++E A + + W P+G N AV
Sbjct: 195 WRGDGEFFVV--SYV-AAQLGRTFKVYDSE-GKLNHTAEKSANLKDSVVWRPTG-NWIAV 249
Query: 241 YDRKSENKCPSIVFYERNGLERSS----FDINEQIDSTVELLKWNCMSDLLAAVVRFEEY 296
++ NK +I +E+NGL FD+ E+ V L+W+ SD+LA +E
Sbjct: 250 -PQQFPNKS-TIALFEKNGLRHRELVLPFDLQEE---PVVQLRWSEDSDILAIRTCAKEE 304
Query: 297 DSVKICFFSNNHWYLKYEIRYLRRDGIRFM-WHPTKPLQLICWTL--DGQITTYNFIWTT 353
V + N HWYLK + + + D + + W + L G+ Y W
Sbjct: 305 QRVYLYTIGNYHWYLKQVLIFEQADPLALLHWDTRCGAEHTLHVLKESGKHLVYR--WAF 362
Query: 354 AVMENSTAL-VIDGSKILVTXXXXXXXXXXXXXXXXKFPTAVTEMAFYS 401
AV N++ + VIDG ++L+T KF T + AF S
Sbjct: 363 AVDRNNSIVGVIDGKRLLLTDFDEAIVPPPMSKIVLKFETYIN--AFIS 409
Score = 84 (34.6 bits), Expect = 1.7e-57, Sum P(5) = 1.7e-57
Identities = 35/156 (22%), Positives = 68/156 (43%)
Query: 1 MNNLKLCAEVPLNLELQSKDEILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIK 60
M NLKL LN + +LQ L+ + ++F + N IY+ Q E ++
Sbjct: 1 MRNLKLRYCKELNAVAHPQHLLLQ-PELNGGASDIYFVVADNKIYAVQ------ESGDVR 53
Query: 61 TAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATXXXXXXXXXXX 120
+ A++ P I ++L A+ V + +G ++L AT
Sbjct: 54 LKVIADL------P--DIVGVEFLQLDNAICVASGAGEVILVDPQTGATSEGTFCDVGIE 105
Query: 121 FISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLE 156
++ SP+ +++ T +++MT +D++ E PL+
Sbjct: 106 SMAWSPNQEVVAFVTRTHNVVLMTSTFDVIAEQPLD 141
Score = 41 (19.5 bits), Expect = 1.7e-57, Sum P(5) = 1.7e-57
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 511 WHAKVSTQIPLEGLV--IAIAP 530
W +V + + + GLV +A+AP
Sbjct: 491 WFYRVHSSVRINGLVNAVAVAP 512
Score = 41 (19.5 bits), Expect = 1.4e-41, Sum P(5) = 1.4e-41
Identities = 6/12 (50%), Positives = 12/12 (100%)
Query: 633 QNLLFIVDISDI 644
Q+LL++VD++D+
Sbjct: 808 QHLLYLVDVNDL 819
Score = 41 (19.5 bits), Expect = 4.8e-40, Sum P(3) = 4.8e-40
Identities = 15/65 (23%), Positives = 31/65 (47%)
Query: 42 NNIYSAQLSSFQNERASIKTAISAEIE--HIDL-EPGDSITAFDYLMEKEALIVGTSSGL 98
N Y +++ S+K + ++E ++ L EP D I D+++ K + G + L
Sbjct: 516 NEFYVQTVNNGHTYEVSLKADKTLKVERSYVQLHEPADQI---DWVIVKGCIWDGYTGAL 572
Query: 99 LLLHS 103
+ L +
Sbjct: 573 VTLRN 577
>ASPGD|ASPL0000074831 [details] [associations]
symbol:AN10551 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0033588 "Elongator holoenzyme complex"
evidence=IEA] [GO:0003674 "molecular_function" evidence=ND]
[GO:0002098 "tRNA wobble uridine modification" evidence=IEA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IEA] Pfam:PF04762 Gene3D:2.120.10.30
InterPro:IPR011042 EMBL:BN001303 OMA:HPVNQVT InterPro:IPR006849
PANTHER:PTHR12747 PIRSF:PIRSF017233 HOGENOM:HOG000188454
EnsemblFungi:CADANIAT00006043 Uniprot:C8V8S8
Length = 1338
Score = 345 (126.5 bits), Expect = 6.2e-57, Sum P(5) = 6.2e-57
Identities = 118/479 (24%), Positives = 218/479 (45%)
Query: 810 NKVSSVLLAIRKALEEKVPESPSRELCILTTLARSDPPALEEALERIKIIRETELLGSDE 869
+KV+ + ALE++ S + ++T PP LE L+ + +RE +
Sbjct: 806 SKVNRICDGFLTALEKR---SDTNLHNLITAHVCKLPPDLESGLQLVARLRE------ES 856
Query: 870 PRRMSYPSAEEALKHLLWLADSEAVYEAALGLYDLNLAAIVALNSQRDPKEFLPYLQELE 929
P + AE+A++H+ +L D+ +Y+ ALGLYDL L +VA +QRDP+E+LP+L++L+
Sbjct: 857 PEQ-----AEDAVEHMCFLTDANRLYDTALGLYDLELTLLVAQQAQRDPREYLPFLRKLQ 911
Query: 930 SMPPLLMRYTIDLRLQRFENALKHIVSMGDSYHADCLNLMKKYAQLFPLGLKLIT-DPAK 988
+P L + ID L R++ AL H+ G H + + K+ L+ + + +P +
Sbjct: 912 QLPDLRRFFEIDNYLGRWQKALGHL--HGLHAHDELREYVVKHV-LYKDAIDIYKYEPEQ 968
Query: 989 MEQVLEAWADHLSDVKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDE 1048
+ + +ADHL ++DA Y S A K Y+ + W L A L+ L +DE
Sbjct: 969 LRDITHLYADHLYQESQYKDAGIAYESLSMYTDAYKCYQLAHLWRESLYTAMLVPLSQDE 1028
Query: 1049 VAKXXXXXXXXXXXXGKPGEAA-KIALDYCGDVTNGISLLIDARDWEEALRVAFMHRRED 1107
+ K AA +I ++ D+ LL + EA R+ +H +
Sbjct: 1029 LTTHATDLATTLVEENKDYLAASQIHAEHLHDIPTAARLLCRGARYSEATRLLTLHSVQS 1088
Query: 1108 LITKVKHASLECA----SSLIGEYKEGLE----KVGKYLTRYXXXXXXXXXXXXXXXSED 1159
LI ++ +L A + L+ +++ L+ ++ + R
Sbjct: 1089 LIPEIVDVALADAMGSMTDLLADFRSQLQAQVPRIAELRVRRIQDPLAYFGGDPTATDGA 1148
Query: 1160 RSMNDLDDDTVSET-SSTFSGMSVYXXXXXXXXXXXXXXXXXXXXXXRESKRQRNRGKIR 1218
++ D+ +++ T +ST +G S++ R+ +R+R RGK
Sbjct: 1149 AGVDIPDNVSLAATDASTLAGKSMFTRYTGKTSSGKTTSSRQSSRNRRKEERKRARGK-- 1206
Query: 1219 PGSPGEEMALVDHLKGMSLTVGAK-QELKSLVVFLVMLGEVDTARKLQD-TGETFQLSQ 1275
G+ EE LV+ ++ + VG E+++LV L+ G + A ++ T + +L +
Sbjct: 1207 KGTVYEEEYLVNSVRRLIERVGTTVPEVENLVDSLLRRGMRERAAAIEKATRDVLKLCE 1265
Score = 205 (77.2 bits), Expect = 6.2e-57, Sum P(5) = 6.2e-57
Identities = 56/189 (29%), Positives = 98/189 (51%)
Query: 675 ERGAKVIGVLHGDEAAVILQTNRGNLECMYPRKLVLTSIVNALIQGRFRDALVMVRRHRI 734
ERG++++ V+ AV+LQ RGN+E +YPR LVL I + + + +R A + R +
Sbjct: 676 ERGSRLVTVMPS-AFAVVLQAPRGNIETIYPRALVLAGIRSFIDKKDYRSAFLTCRSQMV 734
Query: 735 NFNVIVDHCGWQAFLQSASEFVRQVNNLSYITEFVCAINNENITETLYKK-FQFLSLPCR 793
+ N+I D+ Q F++S + FV QV + ++ EF+ + E++++TLYK + L +
Sbjct: 735 DMNLIHDYAPEQ-FMESITLFVDQVKRVDFVDEFLSRLKEEDVSQTLYKDTLKALDMEVA 793
Query: 794 EEFKDLPAKDFKASECNKV-SSVLLAIRKALEEKVPESPSRELCILTTLARSDPPALEEA 852
E K S+ N++ L A+ K + + + +C L PP LE
Sbjct: 794 AE-TGFTMTGKKGSKVNRICDGFLTALEKRSDTNLHNLITAHVCKL-------PPDLESG 845
Query: 853 LERIKIIRE 861
L+ + +RE
Sbjct: 846 LQLVARLRE 854
Score = 173 (66.0 bits), Expect = 6.2e-57, Sum P(5) = 6.2e-57
Identities = 56/185 (30%), Positives = 87/185 (47%)
Query: 164 VHEPELXXXXXXXXXXXWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAF 223
V E +L WRGDG + A S + + ++V+ R+ GTL + SE
Sbjct: 205 VDEGKLSGNDDGRTTITWRGDGAFVAVNSIV---EGIRRAIRVYSRE-GTLDSVSEPVDG 260
Query: 224 MGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDIN--EQIDSTVEL---L 278
+ L W P G IA + ++ +++ +VF+ERNGL F + E+ ST L
Sbjct: 261 LEGALSWRPYGNLIAGI--QRLDDRI-DVVFFERNGLRHGQFTLRLTEEERSTWASNIHL 317
Query: 279 KWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYL-RRDG-IRFMWHPTKPLQLI 336
WN S +LA V+F+ D ++ N H+YLK EI + +G + WH K L+ +
Sbjct: 318 SWNVDSTVLA--VQFK--DRIQFWTSGNYHYYLKQEIPVIVSSEGPFAYKWHHEKALRFV 373
Query: 337 CWTLD 341
D
Sbjct: 374 AGASD 378
Score = 58 (25.5 bits), Expect = 6.2e-57, Sum P(5) = 6.2e-57
Identities = 17/53 (32%), Positives = 26/53 (49%)
Query: 589 LLFGLDDGGRLHVSGKIVCNNCSSFSFYSKSAGQAMSHLILATKQNLLFIVDI 641
+L L G L+ + K++ NC+SF S SH+I T +LL V +
Sbjct: 608 VLISLSRTGGLYANKKLLAKNCTSFLLTS-------SHVIFTTSLHLLKFVHL 653
Score = 50 (22.7 bits), Expect = 6.2e-57, Sum P(5) = 6.2e-57
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 125 SPDGDLLGVTTGFGQILVMTHDWDLLYE 152
SPD +LL +TT L MT +++ + E
Sbjct: 136 SPDEELLALTTSAHTFLYMTREFENVAE 163
>UNIPROTKB|G4MTL1 [details] [associations]
symbol:MGG_07174 "Elongator complex protein 1"
species:242507 "Magnaporthe oryzae 70-15" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0043581 "mycelium development" evidence=IEP]
InterPro:IPR015943 Pfam:PF04762 Gene3D:2.130.10.10 GO:GO:0043581
EMBL:CM001232 KO:K11373 InterPro:IPR006849 PANTHER:PTHR12747
PIRSF:PIRSF017233 RefSeq:XP_003715376.1 EnsemblFungi:MGG_07174T0
GeneID:2683157 KEGG:mgr:MGG_07174 Uniprot:G4MTL1
Length = 1305
Score = 418 (152.2 bits), Expect = 1.2e-52, Sum P(3) = 1.2e-52
Identities = 159/609 (26%), Positives = 267/609 (43%)
Query: 675 ERGAKVIGVLHGDEAAVILQTNRGNLECMYPRKLVLTSIVNALIQGRFRDALVMVRRHRI 734
ERGA+++ + + V+LQ RGNLE ++PR +V+ I + + A R R+
Sbjct: 649 ERGARLVTAVPSN-MNVVLQMPRGNLETIFPRAMVVAGIRKLINDKNYARAFSYCRTQRV 707
Query: 735 NFNVIVDHCGWQAFLQSASEFVRQVNNLSYITEFVCAINNENITETLYKKFQFLSLPCRE 794
+ N++ DH Q FL + F+ Q+ + SYI + ++ E++T+T+YK +
Sbjct: 708 DMNILYDHRPEQ-FLANVGLFLDQLGDTSYIDLVLSSLREEDVTQTMYKDTKKSKPAWAP 766
Query: 795 EFKDLPAKDFKAS------ECNKVSSVLLAIRKALEEKVPESPSRELCILTTLARSDPPA 848
LP+++ S +KV++V A+ K LE + P S I+T +PPA
Sbjct: 767 SSTPLPSQENPPSVSLSDPSSSKVNTVCDAVLKELEARNPASLQN---IITAHVCKNPPA 823
Query: 849 LEEALERIK-IIRETELLGSDEPRRMSYPSAEEALKHLLWLADSEAVYEAALGLYDLNLA 907
L++ L I +++E E L AE+A++H+ +L D +Y+ ALGLY+L LA
Sbjct: 824 LDDGLSVIAGLMKENEAL------------AEKAVEHICFLVDVNRLYDNALGLYNLELA 871
Query: 908 AIVALNSQRDPKEFLPYLQELESMPPLLMRYTIDLRLQRFENALKHIVSMGDSYHADCLN 967
+VA SQRDP+E+LP++Q L + L +TID L E AL H+ + DS +
Sbjct: 872 LLVAQQSQRDPREYLPFVQSLHQLSQLRRCFTIDDHLGNREKALGHLKA--DSDFEGVKD 929
Query: 968 LMKKYAQLFPLGLKLITDPAKMEQVLEA-WADHLSDVKCFEDAATTYFCCSSLEKAMKAY 1026
K++ L+ L L A+ + L A +A++L +A Y +AM Y
Sbjct: 930 YAVKHS-LYQDALGLYRYEAEQSRTLMALYAEYLESNSRNREAGLAYEALGKFAEAMSCY 988
Query: 1027 RASG--NWSGVLTVAGLLKLG--KDEVAKXXXXXXXXXXXXGKPGEAAKIALDYCGDVTN 1082
RA+G +W L A + K + + AA I D+ D
Sbjct: 989 RAAGPSSWRECLAAAQKQQPPPTKSSLTELAESLADALNEAKDYVGAATIQRDFLNDPAT 1048
Query: 1083 GISLLIDARDWEEALRVAFMHRREDLITKVKHASLEC-ASS--LIGEYKEGLEKVGKYLT 1139
I LL + +A+ +A L +V E ASS L+ + K L+ +
Sbjct: 1049 AIQLLCKGSLFADAMLLAATSSEAGLDGEVDSGLTEAFASSTELLADCKAQLKAQTPRIL 1108
Query: 1140 RYXXXXXXXXXXXXXXXSEDRSMNDLDDD-TVSETSSTFSGMSVYXXXXXXXXXXXXXXX 1198
D+ DD +V+ +S + S++
Sbjct: 1109 DLRRKAAEDPLGFYEGERPGGGDGDMPDDVSVAASSRLSTSASLFTRYTGKEGSIGTAGT 1168
Query: 1199 XXXXXXXRESKRQ-RNRGKIRPGSPGEEMALVDHLKGMSLTVGAKQ-ELKSLVVFLVMLG 1256
+ KR+ + R + R G+ EE LV+ + + V + E ++LV L G
Sbjct: 1169 GVSRATHKNRKREEKKRARGRKGTVYEEEYLVNSTRRLIERVNSVGGETEALVAGLFRRG 1228
Query: 1257 EVDTARKLQ 1265
++ AR ++
Sbjct: 1229 MLEQARAVE 1237
Score = 203 (76.5 bits), Expect = 1.2e-52, Sum P(3) = 1.2e-52
Identities = 69/236 (29%), Positives = 109/236 (46%)
Query: 181 WRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAV 240
WR DG Y A S S ++ ++V+ R+ G L ++SE + + W PSG N+ A
Sbjct: 219 WREDGAYVAINSVRAGSRRV---IRVYTRE-GVLDSASEPVDCLEGSMSWRPSG-NLIAG 273
Query: 241 YDRKSENKCPSIVFYERNGLERSSFDIN---EQIDSTVEL-LKWNCMSDLLAAVVRFEEY 296
R S+ +VF+ERNGL F + + + + + + L+WN S +LA V F
Sbjct: 274 IQRLSDRV--DVVFFERNGLRHGQFTLRFPPDLLSTNIPINLEWNPDSTVLA--VSFG-- 327
Query: 297 DSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKP--LQLICWTLDGQITTYNFIWTTA 354
+V++ N HWYLK EIR R WHP KP L L+C + +++ T+
Sbjct: 328 GTVQLWAMGNYHWYLKQEIR-CASTCFRPSWHPEKPMRLSLVC---KNSVAHTEWVFHTS 383
Query: 355 ---VM---ENSTALVIDGSKILVTXXXXXXXXXXXXXXXXKFPTAVTEMAFYSKSS 404
++ + VIDG+ I +T + T V ++AF +S
Sbjct: 384 RGSILPPHDYGAVAVIDGNNIKITPFRTATIPPPMAMFELEAATCVIDVAFTPNNS 439
Score = 71 (30.1 bits), Expect = 1.2e-52, Sum P(3) = 1.2e-52
Identities = 20/77 (25%), Positives = 36/77 (46%)
Query: 568 FPSSCPWMNVVSVGTNGPLKPLLFGLDDGGRLHVSGKIVCNNCSSFSFYSKSAGQAMSHL 627
F + PW V+ + L G+ GG+L+ + +++ NC+SF G HL
Sbjct: 564 FSTQLPWAEVILHDDS----TLAVGMSRGGQLYANTRLLAKNCTSFVV----TGD---HL 612
Query: 628 ILATKQNLLFIVDISDI 644
I T + L +V ++ +
Sbjct: 613 IFTTTNHFLKLVHLTGV 629
>POMBASE|SPBC36.07 [details] [associations]
symbol:elp1 "elongator subunit Elp1 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0002098 "tRNA wobble
uridine modification" evidence=ISO] [GO:0003674
"molecular_function" evidence=ND] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0015031 "protein transport"
evidence=IEA] [GO:0033588 "Elongator holoenzyme complex"
evidence=ISO] InterPro:IPR015943 PomBase:SPBC36.07 Pfam:PF04762
GO:GO:0005829 GO:GO:0006355 Gene3D:2.130.10.10 GO:GO:0015031
EMBL:CU329671 GO:GO:0006351 GenomeReviews:CU329671_GR GO:GO:0002098
eggNOG:COG5290 KO:K11373 OMA:HPVNQVT GO:GO:0033588
InterPro:IPR006849 PANTHER:PTHR12747 PIRSF:PIRSF017233 PIR:T40302
RefSeq:NP_595335.1 IntAct:O59704 STRING:O59704
EnsemblFungi:SPBC36.07.1 GeneID:2541017 KEGG:spo:SPBC36.07
HOGENOM:HOG000188454 OrthoDB:EOG4578G4 NextBio:20802131
Uniprot:O59704
Length = 1253
Score = 308 (113.5 bits), Expect = 2.0e-52, Sum P(3) = 2.0e-52
Identities = 110/462 (23%), Positives = 210/462 (45%)
Query: 810 NKVSSVLLAIRKALEEKVPESPSRELCILTTLARSDPPALEEALERIKIIRETELLGSDE 869
NKV+ + IR+ L K ++ + I+T+ PP +E AL I + + + S+
Sbjct: 764 NKVNLLCKIIREHLTSKYGDTHFQ--AIITSYLCESPPKIEAALGMISGLIKAQ---SE- 817
Query: 870 PRRMSYPSAEEALKHLLWLADSEAVYEAALGLYDLNLAAIVALNSQRDPKEFLPYLQELE 929
+ + A++H+ +L D +++ ALGLYDL LA ++A SQ+DP+E++P+L E +
Sbjct: 818 -------TVDLAIEHMCFLVDVNMLFDHALGLYDLKLALLIAQQSQKDPREYVPFLHEFQ 870
Query: 930 SMPPLLMRYTIDLRLQRFENALKHIVSMGDSYHADCLNLMKKYAQLFPLGLKLIT-DPAK 988
L ++ ID L+R+E AL H+ M +++ + N ++ +L+P L+L D
Sbjct: 871 KQESLRRKFNIDCYLKRYERALGHLKEMENAFD-EFKNFTIQH-KLYPRALELYKYDKEA 928
Query: 989 MEQVLEAWADHLSDVKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDE 1048
++VL +A +L + +AA Y + +A++AY+++G W L++ +D
Sbjct: 929 QKEVLIIFAQYLRENGKSNEAAIAYESVGKISEAIEAYKSAGMWRECLSILQQTTNSEDL 988
Query: 1049 VAKXXXXXXXXXXXXGKPGEAAKIALDYCGDVTNGISLLIDARDWEEALRVAFMHRR--- 1105
+ + + +A I L Y + + + + EA+R+A
Sbjct: 989 IRETAEDLASLCIEKREHCDAGSINLLYLSNPREAVIQMCKGSQYSEAIRIARATGDSSI 1048
Query: 1106 -EDLITKVKHASLECASSLIGEYKEGLEKVGKYLTRYXXXXXXXXXXXXXXXSEDRSMND 1164
+DL+ V S AS L+ +++ ++ + + ED++ +D
Sbjct: 1049 YKDLLISVLGESFGEASELVADFRNQIKSQTERILVLREKKKEDPISWMEGTMEDQTPDD 1108
Query: 1165 LDDDTVSETSSTFSGMSVYXXXXXXXXXXXXXXXXXXXXXXRESKRQRNRGKIRPGSPGE 1224
+ +++ TS + + S+Y R +R+R RGK G+ E
Sbjct: 1109 I---SLASTSLS-TNRSLYTQYTKSSNSSKMTRNTSKNN--RRLERKRARGK--KGTVFE 1160
Query: 1225 EMALVDHLKGMSLTVGA-KQELKSLVVFLVMLGEVDTARKLQ 1265
E LV+ L+ + V + E+ L+ LV A +LQ
Sbjct: 1161 EEYLVNSLRRLIARVEEIRPEVHRLLEALVRCNMTTQASELQ 1202
Score = 208 (78.3 bits), Expect = 2.0e-52, Sum P(3) = 2.0e-52
Identities = 59/197 (29%), Positives = 96/197 (48%)
Query: 181 WRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAV 240
WRGD +Y +++ + + ++V+ R+ G L + SE + ++L W PSG+ +A +
Sbjct: 215 WRGDSQY-VSINRLEKGPR--RAIRVYSRE-GLLDSISEPQDGQQSLLSWKPSGSVLATI 270
Query: 241 YDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVK 300
S+N ++F+ERNGL F + + D L WN S +LA V E +SV
Sbjct: 271 KSDSSDNSS-KVIFFERNGLRHGEFSLRRREDEKYTGLAWNVSSSILA--VSTE--NSVM 325
Query: 301 ICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWT---LDGQITTYNFIWTTAVME 357
+ N HWYLK EI + ++ + WHP L ++ + ++ +
Sbjct: 326 LWTTGNYHWYLKKEIN-IPQNAL-ISWHPEHANTLYITGKNHIEKVVFDLKYVTEFSTSP 383
Query: 358 NSTAL--VIDGSKILVT 372
N L VIDGS +LVT
Sbjct: 384 NDFGLIPVIDGSSLLVT 400
Score = 178 (67.7 bits), Expect = 2.0e-52, Sum P(3) = 2.0e-52
Identities = 67/265 (25%), Positives = 124/265 (46%)
Query: 592 GLDDGGRLHVSGKIVCNNCSSFSFYSKSAGQAMSHLILATKQNLLFIVDISDILHGELAL 651
GL GRL+ +++ SF F ++ ++ T +NLL V + + +L +
Sbjct: 574 GLTSYGRLYAEQRLLSTGVLSF-FCTER------FVLFTTTKNLLKFVHLVSTVD-DLQV 625
Query: 652 KYENFTHVGNRRKEENISYINIWERGAKVIGVLHGDEAAVILQTNRGNLECMYPRKLVLT 711
++ R +E + ERG+K++ + + AV+LQ RGNLE +YPR +VL
Sbjct: 626 VEDDAVD----RHDERCRVV---ERGSKIVASMPS-KMAVVLQMPRGNLETIYPRIMVLD 677
Query: 712 SIVNALIQGRFRDALVMVRRHRINFNVIVDHCGWQAFLQSASEFVRQVNNLSYITEFVCA 771
+ + ++ DA + R HR++ N++ D+ FL++ FV + + Y+ F+ +
Sbjct: 678 GVRTYIKALKYGDAFKVCRTHRLDLNILFDYDP-DLFLKNIPVFVDGLYRVDYLDLFLTS 736
Query: 772 INNENITETLYKKFQFLSLPCREEFKDLPAKDFKASECNKVSSVLLAIRKALEEKVPESP 831
+ EN+T +Y + K + + NKV+ + IR+ L K ++
Sbjct: 737 LKPENVTTGMYS----------DTSKSQSQQSVTTID-NKVNLLCKIIREHLTSKYGDTH 785
Query: 832 SRELCILTTLARSDPPALEEALERI 856
+ I+T+ PP +E AL I
Sbjct: 786 FQ--AIITSYLCESPPKIEAALGMI 808
Score = 37 (18.1 bits), Expect = 9.8e-38, Sum P(3) = 9.8e-38
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 610 CSSFSFYSKSAGQAMSH 626
CS F+ S+G+ +S+
Sbjct: 524 CSEMLFFQTSSGKLISY 540
Score = 37 (18.1 bits), Expect = 2.7e-21, Sum P(2) = 2.7e-21
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 760 NNLSYITEFVCAINNENITETLYK 783
N++S VC ++NEN +Y+
Sbjct: 25 NSISDKIYVVCGLDNENPGIEIYE 48
>UNIPROTKB|F1P5L4 [details] [associations]
symbol:IKBKAP "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006368 "transcription elongation from RNA polymerase II
promoter" evidence=IEA] [GO:0008023 "transcription elongation
factor complex" evidence=IEA] [GO:0008607 "phosphorylase kinase
regulator activity" evidence=IEA] [GO:0016591 "DNA-directed RNA
polymerase II, holoenzyme" evidence=IEA] [GO:0030335 "positive
regulation of cell migration" evidence=IEA] [GO:0033588 "Elongator
holoenzyme complex" evidence=IEA] InterPro:IPR015943 Pfam:PF04762
Gene3D:2.130.10.10 InterPro:IPR006849 PANTHER:PTHR12747
GeneTree:ENSGT00390000013344 EMBL:AADN02060093 IPI:IPI00584850
Ensembl:ENSGALT00000003013 OMA:GFKANVE Uniprot:F1P5L4
Length = 492
Score = 214 (80.4 bits), Expect = 1.6e-18, Sum P(2) = 1.6e-18
Identities = 76/266 (28%), Positives = 117/266 (43%)
Query: 181 WRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAV 240
WRGDG++ A +S C + K ++VW R+ LQ++SE + + L W PSG IA+
Sbjct: 201 WRGDGQFVA-VSAVCPETGARK-VRVWSREL-MLQSTSEPISRLEQALAWKPSGNLIAST 257
Query: 241 YDRKSENKCPSIVFYERNGLERSSFDINEQIDST-VELLKWNCMSDLLAA------VVRF 293
++ + + +VF E+NGL F + Q V L WN S +LA V
Sbjct: 258 QEKPNRH---DVVFLEKNGLLHGEFTLPFQKGQVKVNELIWNADSTVLAVWLEELKTVNS 314
Query: 294 EEYDSVKICFFSNNHWYLKYEIRY--LRRDG-IRFMWHPTKPLQLICWTLDGQITTYNFI 350
V++ N HWYLK + + L ++ + +W P +L Y++
Sbjct: 315 NPNSYVQLWTTGNYHWYLKQSLHFGNLEKNKLVSLLWDSVLPYRLHILCQGWHYLFYDWH 374
Query: 351 WTT--AVMENS----TALVIDGSKILVTXXXXXXXXXXXXXXXXKFPTAVTEMAFYSKSS 404
WTT + ENS VIDG+K+LVT + AV ++AF++
Sbjct: 375 WTTDRGMGENSLHVANVAVIDGAKVLVTAFQHAVVPPPMCTYELQLKQAVNQIAFHTDPK 434
Query: 405 KNCLAAILSDGCLCVVDLPAPDMLED 430
+ AIL V ML+D
Sbjct: 435 CSGDMAILDADNKIYVYRYGQSMLKD 460
Score = 94 (38.1 bits), Expect = 1.6e-18, Sum P(2) = 1.6e-18
Identities = 29/107 (27%), Positives = 50/107 (46%)
Query: 58 SIKTAISAEIEHIDLEPGDS-ITAFDYLMEKEALIVGTSSGLLLLHSVDGNATXXXXXXX 116
S+ +S E E G I +YL E E + V T++G +LL ++
Sbjct: 50 SVVREVSLTAEGFMPEDGSGCIVGIEYLPELECVCVATAAGDILLCNLSTKQVECVGSVD 109
Query: 117 XXXXFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPL--EELAEG 161
+S SPD +L+ + TG +++MT D++ + E + +E EG
Sbjct: 110 GGLSAMSWSPDQELVLLATGQQTLIMMTRDFEPITEKQIHQDEFGEG 156
>WB|WBGene00022463 [details] [associations]
symbol:elpc-1 species:6239 "Caenorhabditis elegans"
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0002098
"tRNA wobble uridine modification" evidence=IGI;IMP] [GO:0043025
"neuronal cell body" evidence=IDA] [GO:0006412 "translation"
evidence=IGI;IMP] [GO:0008355 "olfactory learning" evidence=IMP]
[GO:0048598 "embryonic morphogenesis" evidence=IGI] [GO:0040025
"vulval development" evidence=IGI] [GO:0048599 "oocyte development"
evidence=IGI] [GO:0007283 "spermatogenesis" evidence=IGI]
[GO:0043005 "neuron projection" evidence=IDA] [GO:0003968
"RNA-directed RNA polymerase activity" evidence=ISS] [GO:0001172
"transcription, RNA-dependent" evidence=ISS] InterPro:IPR015943
Pfam:PF04762 GO:GO:0009792 GO:GO:0005737 GO:GO:0008355
Gene3D:2.130.10.10 GO:GO:0006412 GO:GO:0048598 GO:GO:0043025
GO:GO:0043005 GO:GO:0007283 EMBL:FO080728 GO:GO:0040025
GO:GO:0048599 GO:GO:0002098 eggNOG:COG5290 KO:K11373
InterPro:IPR006849 PANTHER:PTHR12747 PIRSF:PIRSF017233
GeneTree:ENSGT00390000013344 OMA:NANLLCS GO:GO:0003968
RefSeq:NP_491524.1 ProteinModelPortal:Q9N595 SMR:Q9N595
STRING:Q9N595 PaxDb:Q9N595 EnsemblMetazoa:Y110A7A.16 GeneID:172143
KEGG:cel:CELE_Y110A7A.16 UCSC:Y110A7A.16 CTD:172143
WormBase:Y110A7A.16 HOGENOM:HOG000019279 InParanoid:Q9N595
NextBio:874199 GO:GO:0001172 Uniprot:Q9N595
Length = 1250
Score = 180 (68.4 bits), Expect = 5.0e-18, Sum P(3) = 5.0e-18
Identities = 99/466 (21%), Positives = 191/466 (40%)
Query: 837 ILTTLARSDPPALEEALERIKIIRETELLGSDEPRRMSYPSAEEALKHLLWLADSEAVYE 896
+LT L RS P + + L+ ++ E + R+ + +L H+ + ++ ++
Sbjct: 771 LLTALLRSKPSKVNDCLKEVQ--EHVEKIAD---RKDVF--TRNSLHHISFFVPAKELFN 823
Query: 897 AALGLYDLNLAAIVALNSQRDPKEFLPYLQELESMPPLLMR-YTIDLRLQRFENALKHIV 955
AL YDL LA VA S DPKE+LP L +L + L R Y I++ + + +A+ +
Sbjct: 824 CALSTYDLKLAQQVAEASNYDPKEYLPVLNKLNRVMCTLERQYRINVVREAWIDAVSSLF 883
Query: 956 SMGDS--------YHADCLNLMKKYAQLFPLGLKLITD-PAKMEQVLEAWADHLSDVKCF 1006
+ S + D +++++ +L+ L L+ + +Q E +A L +
Sbjct: 884 LLDSSKERGSEETWWNDIEDIIQR-EKLYQDALTLVKPGDRRYKQCCELYAAELERKVHW 942
Query: 1007 EDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKXXXXXXXXXXXXGKP 1066
+AA Y + EK +K + S + G+ A L + ++ +P
Sbjct: 943 REAALFYELSGNSEKTLKCWEMSRDVDGLAASARRLAVDAGKLKIHAIKMSTTLREARQP 1002
Query: 1067 GEAAKIALDYCGDV-TNGISLLIDARDWEEALRVAFMHRREDLITKVKHASLECASSLIG 1125
E AK AL G T + +L DA +W +A R + + E L K A+L ++
Sbjct: 1003 KELAK-ALKLAGSSSTQIVHVLCDAFEWLDASREVEVGKEEAL----KKAALSRNDQVLM 1057
Query: 1126 EYKEGLEKVGKYLTRYXXXXXXXXXXXXXXXSEDRSMNDLDDD-TVSETSSTFSGMSVYX 1184
+ + + Y R + + ++DL DD +V + S+ SG S
Sbjct: 1058 DLERRKTEFENYKKRLAVVRENKLKRVEQFAAGE--VDDLRDDISVISSISSRSGSS--- 1112
Query: 1185 XXXXXXXXXXXXXXXXXXXXXRESKRQRNRGKIRPGSPGEEMALVDHL-KGMSLTVGAKQ 1243
R + ++ + ++ G E+ AL++ L +
Sbjct: 1113 ------------KVSMASTVRRRKQIEKKKSSLKEGGEYEDSALLNVLSENYRWLENIGN 1160
Query: 1244 ELKSLVVFLVMLGEVDTARKLQDTGETFQLS-QMAAIKLAEDTMSI 1288
EL L++ L+ +G + KL+ + F Q + + +++S+
Sbjct: 1161 ELSQLILVLITVGNFPESLKLRSAYDEFATKLQKSKAAIWPESLSV 1206
Score = 96 (38.9 bits), Expect = 5.0e-18, Sum P(3) = 5.0e-18
Identities = 33/133 (24%), Positives = 62/133 (46%)
Query: 181 WRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANI--A 238
WR DG+ A F +S + L V++R+ L + ++ P+ AN+ +
Sbjct: 194 WRWDGEIVAV--SFYSSQNDTRNLTVFDRNGEILNNMNIRNIYLSHCFAHKPN-ANLLCS 250
Query: 239 AVYDRKSENKCPSIVFYERNGLERSSFDIN---EQIDST--VELLKWNCMSDLLAAVVRF 293
A+ + S+++ IV YERNG R+S+ + QI+ +E ++WN +L+
Sbjct: 251 AIQENGSDDR---IVIYERNGETRNSYVVKWPANQIEDRRIIEKIEWNSTGTILSMQTSL 307
Query: 294 EEYDSVKICFFSN 306
+ ++ SN
Sbjct: 308 GKKHQLEFWHLSN 320
Score = 91 (37.1 bits), Expect = 5.0e-18, Sum P(3) = 5.0e-18
Identities = 36/178 (20%), Positives = 75/178 (42%)
Query: 576 NVVSVGTNGPLKPLLFGLDDGGRLHVSGKIVCNNCSSFSFYSKSAGQAMSHLILATKQNL 635
N+ +G N K + +DG + ++ K F S +H ++ ++
Sbjct: 536 NIGWIGVNPSNKHVEIASNDGKFIDLNTKEELFKIDKFE--STEVHFIQNHHVIQVDNSM 593
Query: 636 LFIVD-------ISDILHGE--LALKYENFTHVGNRRKEENISYINIWERGAKVIGVLHG 686
LF+ IS + G L + ++N + + + + E G +++
Sbjct: 594 LFLDSERVSQDAISILTRGSDILLIDFDNKLRFIDAESGKTLEDVRNVEAGCELVAC-DS 652
Query: 687 DEAAVILQTNRGNLECMYPRKLVLTSIVNALIQGRFRDALVMVRRHRINFNVIVDHCG 744
A VILQ RGNLE + PR+ V+ + L + + + +++HR++ + + + G
Sbjct: 653 QSANVILQAARGNLETIQPRRYVMAHTRDLLDRKEYIASFKWMKKHRVDMSFAMKYKG 710
Score = 43 (20.2 bits), Expect = 1.3e-12, Sum P(3) = 1.3e-12
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 129 DLLGVTTGFGQILVMTHDWDLL 150
D++ TT + V+T DW ++
Sbjct: 406 DIVAYTTSTHHVHVITSDWKII 427
Score = 39 (18.8 bits), Expect = 3.3e-12, Sum P(3) = 3.3e-12
Identities = 17/48 (35%), Positives = 24/48 (50%)
Query: 394 VTEMAFYSKSSKNCLAAILSDG-CLCVVDLPAPDMLEDLEGTEFVVEA 440
V ++F ++ N + IL+DG L V D D LE E T+ V A
Sbjct: 63 VISLSF--RTDGNQIVVILADGRALIVEDGEVMD-LEIAELTDTTVSA 107
Score = 37 (18.1 bits), Expect = 5.2e-12, Sum P(3) = 5.2e-12
Identities = 9/28 (32%), Positives = 12/28 (42%)
Query: 261 ERSSFDINEQIDSTVELLKWNCMSDLLA 288
E +I E D+TV +W LA
Sbjct: 91 EVMDLEIAELTDTTVSAAEWTADEQTLA 118
>UNIPROTKB|F1NJW8 [details] [associations]
symbol:IKBKAP "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006368 "transcription elongation from RNA polymerase II
promoter" evidence=IEA] [GO:0008023 "transcription elongation
factor complex" evidence=IEA] [GO:0008607 "phosphorylase kinase
regulator activity" evidence=IEA] [GO:0016591 "DNA-directed RNA
polymerase II, holoenzyme" evidence=IEA] [GO:0030335 "positive
regulation of cell migration" evidence=IEA] [GO:0033588 "Elongator
holoenzyme complex" evidence=IEA] InterPro:IPR015943 Pfam:PF04762
Gene3D:2.130.10.10 InterPro:IPR006849 PANTHER:PTHR12747
GeneTree:ENSGT00390000013344 EMBL:AADN02060093 IPI:IPI00822815
Ensembl:ENSGALT00000037571 Uniprot:F1NJW8
Length = 381
Score = 179 (68.1 bits), Expect = 3.7e-15, Sum P(2) = 3.7e-15
Identities = 54/183 (29%), Positives = 85/183 (46%)
Query: 181 WRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAV 240
WRGDG++ A +S C + K ++VW R+ LQ++SE + + L W PSG IA+
Sbjct: 201 WRGDGQFVA-VSAVCPETGARK-VRVWSREL-MLQSTSEPISRLEQALAWKPSGNLIAST 257
Query: 241 YDRKSENKCPSIVFYERNGLERSSFDINEQIDST-VELLKWNCMSDLLAA------VVRF 293
++ + + +VF E+NGL F + Q V L WN S +LA V
Sbjct: 258 QEKPNRH---DVVFLEKNGLLHGEFTLPFQKGQVKVNELIWNADSTVLAVWLEELKTVNS 314
Query: 294 EEYDSVKICFFSNNHWYLKYEIRY--LRRDG-IRFMWHPTKPLQLICWTLDGQITTYNFI 350
V++ N HWYLK + + L ++ + +W P +L Y++
Sbjct: 315 NPNSYVQLWTTGNYHWYLKQSLHFGNLEKNKLVSLLWDSVLPYRLHILCQGWHYLFYDWH 374
Query: 351 WTT 353
WTT
Sbjct: 375 WTT 377
Score = 94 (38.1 bits), Expect = 3.7e-15, Sum P(2) = 3.7e-15
Identities = 29/107 (27%), Positives = 50/107 (46%)
Query: 58 SIKTAISAEIEHIDLEPGDS-ITAFDYLMEKEALIVGTSSGLLLLHSVDGNATXXXXXXX 116
S+ +S E E G I +YL E E + V T++G +LL ++
Sbjct: 50 SVVREVSLTAEGFMPEDGSGCIVGIEYLPELECVCVATAAGDILLCNLSTKQVECVGSVD 109
Query: 117 XXXXFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPL--EELAEG 161
+S SPD +L+ + TG +++MT D++ + E + +E EG
Sbjct: 110 GGLSAMSWSPDQELVLLATGQQTLIMMTRDFEPITEKQIHQDEFGEG 156
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.134 0.397 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 1325 1228 0.0010 123 3 11 22 0.39 34
39 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 18
No. of states in DFA: 634 (67 KB)
Total size of DFA: 555 KB (2251 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 97.13u 0.11s 97.24t Elapsed: 00:00:04
Total cpu time: 97.15u 0.11s 97.26t Elapsed: 00:00:04
Start: Tue May 21 03:57:06 2013 End: Tue May 21 03:57:10 2013