Query 000731
Match_columns 1325
No_of_seqs 509 out of 1722
Neff 7.1
Searched_HMMs 46136
Date Mon Apr 1 22:47:07 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000731.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000731hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1920 IkappaB kinase complex 100.0 6E-219 1E-223 1968.9 94.0 1212 1-1325 1-1264(1265)
2 PF04762 IKI3: IKI3 family; I 100.0 6E-181 1E-185 1726.4 96.5 871 1-958 1-928 (928)
3 COG5290 IkappaB kinase complex 100.0 4E-174 9E-179 1500.4 56.9 1150 1-1288 1-1209(1243)
4 KOG2041 WD40 repeat protein [G 100.0 1.5E-32 3.2E-37 318.3 63.8 823 13-1108 8-909 (1189)
5 KOG1538 Uncharacterized conser 100.0 1.5E-33 3.2E-38 324.8 42.2 758 76-1111 13-805 (1081)
6 KOG0271 Notchless-like WD40 re 100.0 1.5E-31 3.2E-36 294.4 26.5 321 20-421 115-479 (480)
7 KOG0271 Notchless-like WD40 re 100.0 1.3E-30 2.9E-35 286.9 28.3 344 113-547 112-475 (480)
8 KOG0272 U4/U6 small nuclear ri 100.0 2.5E-28 5.4E-33 272.9 23.8 278 76-421 176-458 (459)
9 KOG0318 WD40 repeat stress pro 100.0 2.1E-24 4.6E-29 246.5 48.1 442 22-552 20-559 (603)
10 KOG0273 Beta-transducin family 99.9 1.1E-25 2.5E-30 254.3 30.3 338 22-478 180-522 (524)
11 KOG0272 U4/U6 small nuclear ri 99.9 1.5E-26 3.3E-31 258.6 21.9 263 22-333 177-444 (459)
12 KOG0291 WD40-repeat-containing 99.9 9.3E-24 2E-28 249.2 44.8 388 22-479 191-612 (893)
13 KOG0645 WD40 repeat protein [G 99.9 7.9E-25 1.7E-29 233.4 31.5 280 112-423 10-311 (312)
14 KOG1538 Uncharacterized conser 99.9 1.2E-23 2.6E-28 243.5 43.1 781 22-1090 14-843 (1081)
15 KOG0276 Vesicle coat complex C 99.9 7.2E-22 1.6E-26 229.0 56.7 380 22-476 15-414 (794)
16 KOG0318 WD40 repeat stress pro 99.9 8.1E-24 1.8E-28 241.8 39.6 337 76-478 191-601 (603)
17 KOG0291 WD40-repeat-containing 99.9 5.4E-22 1.2E-26 234.4 55.4 448 25-554 19-551 (893)
18 KOG0306 WD40-repeat-containing 99.9 3E-23 6.6E-28 244.8 44.9 434 22-553 23-622 (888)
19 KOG0284 Polyadenylation factor 99.9 1E-25 2.2E-30 250.8 18.8 283 76-424 97-381 (464)
20 KOG0279 G protein beta subunit 99.9 5.6E-24 1.2E-28 227.9 31.0 280 22-345 17-308 (315)
21 KOG0292 Vesicle coat complex C 99.9 8.7E-23 1.9E-27 243.4 40.0 298 75-468 9-313 (1202)
22 KOG0973 Histone transcription 99.9 4.4E-24 9.5E-29 262.9 29.2 317 76-424 14-356 (942)
23 KOG0279 G protein beta subunit 99.9 3.3E-23 7.1E-28 222.0 31.3 298 111-478 10-312 (315)
24 KOG0319 WD40-repeat-containing 99.9 2.9E-22 6.2E-27 237.1 40.4 440 22-551 64-617 (775)
25 KOG0319 WD40-repeat-containing 99.9 3.7E-22 8.1E-27 236.1 37.1 434 26-554 25-578 (775)
26 KOG0306 WD40-repeat-containing 99.9 4E-22 8.7E-27 235.4 36.1 376 22-478 109-663 (888)
27 KOG0263 Transcription initiati 99.9 1.3E-23 2.8E-28 251.4 22.5 245 22-306 380-650 (707)
28 KOG0286 G-protein beta subunit 99.9 6.8E-22 1.5E-26 212.9 32.1 284 67-421 51-343 (343)
29 KOG0273 Beta-transducin family 99.9 3.2E-22 6.9E-27 226.6 30.3 327 75-550 178-520 (524)
30 cd00200 WD40 WD40 domain, foun 99.9 3.1E-21 6.7E-26 214.6 36.1 277 75-421 9-289 (289)
31 PLN00181 protein SPA1-RELATED; 99.9 2.6E-21 5.7E-26 252.5 39.8 293 75-422 483-792 (793)
32 KOG0263 Transcription initiati 99.9 8.6E-23 1.9E-27 244.4 23.4 238 75-424 378-650 (707)
33 KOG0266 WD40 repeat-containing 99.9 6.3E-22 1.4E-26 241.9 31.2 287 75-423 159-454 (456)
34 KOG0645 WD40 repeat protein [G 99.9 4E-21 8.6E-26 205.3 30.3 277 22-345 16-306 (312)
35 KOG0295 WD40 repeat-containing 99.9 1.5E-21 3.2E-26 215.5 24.9 292 76-476 109-403 (406)
36 KOG1920 IkappaB kinase complex 99.9 5.6E-18 1.2E-22 210.3 58.1 316 808-1139 656-1038(1265)
37 cd00200 WD40 WD40 domain, foun 99.9 3.5E-20 7.5E-25 206.1 34.6 273 22-345 11-286 (289)
38 KOG0266 WD40 repeat-containing 99.9 9E-21 2E-25 231.7 32.0 293 111-478 154-453 (456)
39 KOG0293 WD40 repeat-containing 99.9 3.5E-21 7.5E-26 214.7 23.2 284 75-424 224-514 (519)
40 KOG0973 Histone transcription 99.9 8E-21 1.7E-25 234.3 27.6 305 111-479 8-355 (942)
41 KOG0286 G-protein beta subunit 99.9 6.3E-20 1.4E-24 197.8 30.3 263 22-332 57-328 (343)
42 KOG1524 WD40 repeat-containing 99.9 3.5E-21 7.6E-26 219.8 20.6 231 22-294 16-278 (737)
43 PLN00181 protein SPA1-RELATED; 99.9 1.8E-19 3.8E-24 235.4 38.7 281 22-346 485-789 (793)
44 KOG0292 Vesicle coat complex C 99.9 1.8E-17 3.8E-22 198.7 50.8 347 22-424 11-398 (1202)
45 KOG0284 Polyadenylation factor 99.9 4.9E-21 1.1E-25 213.8 15.9 271 22-341 98-371 (464)
46 KOG0305 Anaphase promoting com 99.8 1.7E-19 3.7E-24 213.7 28.4 277 26-425 183-463 (484)
47 PTZ00421 coronin; Provisional 99.8 5.1E-19 1.1E-23 216.4 33.3 226 75-330 75-314 (493)
48 KOG0315 G-protein beta subunit 99.8 1.9E-19 4.2E-24 190.2 24.6 249 16-308 36-291 (311)
49 KOG0293 WD40 repeat-containing 99.8 1.1E-19 2.3E-24 202.9 21.4 292 109-478 217-512 (519)
50 KOG0265 U5 snRNP-specific prot 99.8 7.8E-19 1.7E-23 190.2 27.1 279 75-421 47-336 (338)
51 KOG0313 Microtubule binding pr 99.8 6.9E-19 1.5E-23 195.5 26.6 284 72-423 102-418 (423)
52 KOG1063 RNA polymerase II elon 99.8 5.8E-17 1.3E-21 191.2 42.9 452 24-553 18-648 (764)
53 KOG0295 WD40 repeat-containing 99.8 4.9E-19 1.1E-23 195.8 22.8 262 23-333 111-390 (406)
54 PTZ00420 coronin; Provisional 99.8 7.8E-18 1.7E-22 207.1 35.1 226 75-332 74-319 (568)
55 KOG0276 Vesicle coat complex C 99.8 4E-17 8.7E-22 190.0 38.7 235 75-346 13-253 (794)
56 KOG2048 WD40 repeat protein [G 99.8 1.9E-16 4E-21 187.0 44.4 446 22-553 27-548 (691)
57 KOG0772 Uncharacterized conser 99.8 5.2E-19 1.1E-23 201.9 21.7 300 76-424 168-488 (641)
58 KOG0641 WD40 repeat protein [G 99.8 1.6E-17 3.6E-22 172.6 30.6 289 75-423 32-349 (350)
59 KOG0315 G-protein beta subunit 99.8 8.5E-18 1.8E-22 177.8 27.8 281 88-433 11-298 (311)
60 KOG2096 WD40 repeat protein [G 99.8 5.2E-18 1.1E-22 184.4 26.7 294 67-467 82-393 (420)
61 KOG0296 Angio-associated migra 99.8 2.3E-17 5.1E-22 182.8 30.9 323 22-423 66-398 (399)
62 KOG1063 RNA polymerase II elon 99.8 1.4E-17 3E-22 196.4 30.7 368 21-423 268-763 (764)
63 TIGR03866 PQQ_ABC_repeats PQQ- 99.8 7.8E-17 1.7E-21 184.2 36.0 270 88-428 2-284 (300)
64 KOG0265 U5 snRNP-specific prot 99.8 1.2E-17 2.6E-22 181.1 27.1 285 110-468 41-329 (338)
65 PTZ00421 coronin; Provisional 99.8 1.3E-17 2.8E-22 204.1 31.0 243 78-345 23-285 (493)
66 KOG0772 Uncharacterized conser 99.8 3.2E-18 6.9E-23 195.6 23.4 286 22-346 169-483 (641)
67 KOG1407 WD40 repeat protein [F 99.8 1.3E-17 2.7E-22 177.8 26.2 266 22-339 22-291 (313)
68 KOG0296 Angio-associated migra 99.8 4.3E-17 9.4E-22 180.7 31.3 327 75-476 64-395 (399)
69 KOG1274 WD40 repeat protein [G 99.8 1.3E-17 2.8E-22 202.2 28.7 260 22-333 15-284 (933)
70 KOG0275 Conserved WD40 repeat- 99.8 3.9E-19 8.4E-24 192.5 12.8 269 116-421 213-507 (508)
71 PTZ00420 coronin; Provisional 99.8 7.2E-17 1.6E-21 198.6 33.5 228 93-345 50-288 (568)
72 KOG0278 Serine/threonine kinas 99.8 2.8E-18 6.2E-23 181.2 16.3 278 76-424 15-298 (334)
73 KOG2106 Uncharacterized conser 99.8 4.2E-15 9.2E-20 170.0 42.5 411 28-550 73-518 (626)
74 KOG0282 mRNA splicing factor [ 99.8 2.6E-18 5.7E-23 196.0 16.7 281 75-421 214-503 (503)
75 KOG2106 Uncharacterized conser 99.8 1.7E-15 3.8E-20 173.1 37.0 393 22-477 202-624 (626)
76 KOG0283 WD40 repeat-containing 99.8 5.7E-17 1.2E-21 196.5 26.6 264 111-425 262-578 (712)
77 KOG0305 Anaphase promoting com 99.8 6.6E-17 1.4E-21 191.9 26.3 277 119-478 180-460 (484)
78 KOG1332 Vesicle coat complex C 99.8 3E-17 6.4E-22 173.5 19.0 249 22-309 13-291 (299)
79 KOG1407 WD40 repeat protein [F 99.8 1.5E-16 3.3E-21 169.6 24.4 237 22-305 66-311 (313)
80 TIGR03866 PQQ_ABC_repeats PQQ- 99.8 2.5E-15 5.4E-20 171.7 36.5 255 33-337 2-265 (300)
81 KOG0282 mRNA splicing factor [ 99.8 1.6E-17 3.5E-22 189.6 17.6 276 23-345 217-500 (503)
82 KOG0285 Pleiotropic regulator 99.7 3.1E-16 6.7E-21 172.9 26.6 282 75-425 151-441 (460)
83 KOG3617 WD40 and TPR repeat-co 99.7 1.1E-14 2.3E-19 173.5 40.9 113 177-305 19-131 (1416)
84 KOG0275 Conserved WD40 repeat- 99.7 3.8E-17 8.2E-22 177.2 18.5 281 22-342 215-501 (508)
85 KOG2048 WD40 repeat protein [G 99.7 6.4E-14 1.4E-18 165.9 45.9 353 76-479 26-411 (691)
86 KOG0640 mRNA cleavage stimulat 99.7 1.9E-16 4.1E-21 171.6 21.8 283 75-423 112-426 (430)
87 KOG1332 Vesicle coat complex C 99.7 4.8E-17 1E-21 171.9 16.7 253 114-424 9-287 (299)
88 KOG0643 Translation initiation 99.7 2E-15 4.4E-20 161.4 26.9 296 76-423 11-317 (327)
89 KOG0299 U3 snoRNP-associated p 99.7 1E-15 2.3E-20 174.1 26.2 302 109-467 135-445 (479)
90 KOG1009 Chromatin assembly com 99.7 8.3E-16 1.8E-20 172.6 24.0 320 75-424 13-373 (434)
91 KOG1539 WD repeat protein [Gen 99.7 2.6E-14 5.7E-19 171.9 37.7 383 33-477 173-646 (910)
92 KOG0313 Microtubule binding pr 99.7 1.7E-15 3.6E-20 168.8 24.8 266 27-329 110-399 (423)
93 KOG3616 Selective LIM binding 99.7 2.4E-16 5.1E-21 184.7 18.9 254 879-1139 648-920 (1636)
94 PF04762 IKI3: IKI3 family; I 99.7 2.4E-12 5.3E-17 167.8 57.2 291 76-423 22-379 (928)
95 KOG1539 WD repeat protein [Gen 99.7 1.5E-13 3.3E-18 165.6 41.9 395 75-552 159-647 (910)
96 KOG0310 Conserved WD40 repeat- 99.7 2.7E-15 5.9E-20 172.0 25.7 278 76-421 27-307 (487)
97 KOG0288 WD40 repeat protein Ti 99.7 3.2E-16 7E-21 176.0 17.5 276 75-421 175-459 (459)
98 KOG2096 WD40 repeat protein [G 99.7 4.6E-15 1E-19 161.7 24.2 261 112-478 82-359 (420)
99 KOG0316 Conserved WD40 repeat- 99.7 1E-14 2.2E-19 153.6 25.5 240 172-478 16-256 (307)
100 KOG2055 WD40 repeat protein [G 99.7 7.1E-15 1.5E-19 167.2 25.7 230 22-294 215-457 (514)
101 KOG0285 Pleiotropic regulator 99.7 4.5E-15 9.8E-20 163.8 23.1 241 22-312 153-396 (460)
102 KOG0307 Vesicle coat complex C 99.7 1.1E-14 2.4E-19 181.2 29.3 291 120-478 10-326 (1049)
103 KOG0277 Peroxisomal targeting 99.7 3.3E-15 7.3E-20 158.9 21.0 279 78-422 11-308 (311)
104 KOG0650 WD40 repeat nucleolar 99.7 4.5E-15 9.7E-20 172.7 22.7 307 75-421 400-733 (733)
105 KOG1274 WD40 repeat protein [G 99.7 1.6E-14 3.4E-19 175.8 27.9 273 76-421 14-298 (933)
106 KOG0300 WD40 repeat-containing 99.7 7.1E-15 1.5E-19 159.5 21.8 304 75-425 148-478 (481)
107 KOG1446 Histone H3 (Lys4) meth 99.7 1.2E-13 2.6E-18 151.9 31.4 281 75-423 14-303 (311)
108 KOG1524 WD40 repeat-containing 99.7 1.4E-13 3E-18 158.3 32.8 259 77-421 16-284 (737)
109 KOG0289 mRNA splicing factor [ 99.7 2.9E-14 6.2E-19 161.1 26.2 249 23-316 222-473 (506)
110 KOG0310 Conserved WD40 repeat- 99.6 2E-14 4.3E-19 165.0 25.3 231 75-344 68-303 (487)
111 KOG0268 Sof1-like rRNA process 99.6 2E-15 4.4E-20 167.1 16.4 275 75-478 66-344 (433)
112 KOG0643 Translation initiation 99.6 2.3E-14 5E-19 153.5 23.3 244 22-305 12-317 (327)
113 KOG0647 mRNA export protein (c 99.6 2.7E-14 5.8E-19 155.4 23.5 252 15-292 21-313 (347)
114 KOG0647 mRNA export protein (c 99.6 6.3E-14 1.4E-18 152.6 26.0 285 108-466 19-312 (347)
115 KOG0288 WD40 repeat protein Ti 99.6 5E-15 1.1E-19 166.5 18.0 264 22-333 177-445 (459)
116 KOG0308 Conserved WD40 repeat- 99.6 1.1E-14 2.4E-19 171.1 21.5 251 27-307 31-287 (735)
117 KOG0283 WD40 repeat-containing 99.6 1.1E-14 2.4E-19 176.8 22.0 196 75-305 267-532 (712)
118 PRK01742 tolB translocation pr 99.6 1.1E-14 2.5E-19 177.3 22.3 218 76-330 204-426 (429)
119 KOG0281 Beta-TrCP (transducin 99.6 4.6E-15 9.9E-20 162.8 16.3 278 22-377 199-479 (499)
120 KOG0316 Conserved WD40 repeat- 99.6 1.4E-13 3E-18 145.1 26.1 266 22-340 19-290 (307)
121 KOG1408 WD40 repeat protein [F 99.6 1.2E-13 2.7E-18 162.6 28.5 327 22-424 326-714 (1080)
122 KOG0277 Peroxisomal targeting 99.6 1.7E-14 3.7E-19 153.6 18.8 236 75-344 60-303 (311)
123 KOG0281 Beta-TrCP (transducin 99.6 4.7E-15 1E-19 162.7 14.5 272 75-425 197-479 (499)
124 KOG2445 Nuclear pore complex c 99.6 1.3E-13 2.9E-18 150.3 24.2 257 22-309 15-323 (361)
125 KOG2041 WD40 repeat protein [G 99.6 5.3E-10 1.2E-14 132.3 54.9 205 22-242 73-328 (1189)
126 KOG0308 Conserved WD40 repeat- 99.6 2.4E-14 5.3E-19 168.3 18.6 273 85-423 35-327 (735)
127 KOG0641 WD40 repeat protein [G 99.6 1.4E-12 3.1E-17 136.2 29.4 218 75-331 89-331 (350)
128 KOG0278 Serine/threonine kinas 99.6 3E-14 6.4E-19 151.1 17.0 286 110-479 9-297 (334)
129 KOG0264 Nucleosome remodeling 99.6 4.9E-14 1.1E-18 161.0 19.8 265 72-424 121-405 (422)
130 KOG1446 Histone H3 (Lys4) meth 99.6 1.2E-12 2.6E-17 144.1 29.9 262 22-331 16-287 (311)
131 KOG0289 mRNA splicing factor [ 99.6 1.9E-13 4.1E-18 154.5 24.1 256 2-302 241-503 (506)
132 PRK03629 tolB translocation pr 99.6 2.5E-13 5.5E-18 165.3 27.4 223 76-329 199-427 (429)
133 KOG4497 Uncharacterized conser 99.6 1.3E-13 2.8E-18 150.9 21.9 304 22-415 50-424 (447)
134 COG2319 FOG: WD40 repeat [Gene 99.6 6.5E-11 1.4E-15 138.1 45.9 367 22-478 67-441 (466)
135 KOG1036 Mitotic spindle checkp 99.6 1.1E-12 2.4E-17 143.7 28.3 283 73-467 11-294 (323)
136 KOG1408 WD40 repeat protein [F 99.6 1.8E-12 4E-17 153.0 31.9 384 27-479 265-713 (1080)
137 KOG2445 Nuclear pore complex c 99.6 5E-13 1.1E-17 145.9 25.2 264 115-423 12-318 (361)
138 PRK05137 tolB translocation pr 99.6 3.6E-13 7.8E-18 164.5 27.4 203 76-306 202-413 (435)
139 KOG0301 Phospholipase A2-activ 99.6 3.7E-13 8E-18 159.7 25.3 254 33-345 26-283 (745)
140 KOG0299 U3 snoRNP-associated p 99.6 1E-12 2.2E-17 150.1 27.6 278 22-339 144-444 (479)
141 KOG0294 WD40 repeat-containing 99.6 4.1E-13 9E-18 147.0 22.8 241 112-424 39-282 (362)
142 KOG0639 Transducin-like enhanc 99.6 1.5E-13 3.3E-18 156.8 19.7 241 20-305 419-663 (705)
143 KOG2919 Guanine nucleotide-bin 99.5 4.4E-13 9.5E-18 146.9 22.4 285 119-467 52-360 (406)
144 PRK02889 tolB translocation pr 99.5 1.1E-12 2.4E-17 159.8 27.7 225 76-329 196-424 (427)
145 KOG1273 WD40 repeat protein [G 99.5 3.7E-13 8E-18 147.0 20.4 240 77-333 25-307 (405)
146 KOG0301 Phospholipase A2-activ 99.5 8.3E-13 1.8E-17 156.8 22.9 228 26-309 64-292 (745)
147 PRK04922 tolB translocation pr 99.5 1.6E-12 3.4E-17 158.8 25.9 223 76-329 204-432 (433)
148 KOG4283 Transcription-coupled 99.5 2.3E-12 5E-17 139.6 23.5 311 22-423 45-365 (397)
149 KOG0269 WD40 repeat-containing 99.5 3.7E-13 8E-18 161.2 18.6 280 23-344 42-334 (839)
150 KOG4497 Uncharacterized conser 99.5 1.4E-12 3E-17 143.0 21.6 359 25-468 13-423 (447)
151 KOG0274 Cdc4 and related F-box 99.5 2E-12 4.3E-17 159.1 25.7 233 23-308 211-444 (537)
152 KOG0269 WD40 repeat-containing 99.5 4.7E-13 1E-17 160.3 19.0 289 77-423 41-340 (839)
153 PF08662 eIF2A: Eukaryotic tra 99.5 1.2E-12 2.5E-17 142.2 20.5 161 79-263 9-184 (194)
154 KOG0274 Cdc4 and related F-box 99.5 6.1E-12 1.3E-16 154.9 28.7 271 76-428 209-487 (537)
155 COG2319 FOG: WD40 repeat [Gene 99.5 7.9E-10 1.7E-14 129.0 45.2 286 75-425 65-361 (466)
156 KOG0264 Nucleosome remodeling 99.5 1.6E-12 3.5E-17 148.8 21.2 238 33-306 138-405 (422)
157 KOG1036 Mitotic spindle checkp 99.5 5.3E-12 1.1E-16 138.5 24.0 275 15-339 7-293 (323)
158 KOG0640 mRNA cleavage stimulat 99.5 1.5E-12 3.2E-17 141.8 19.5 242 22-305 174-426 (430)
159 PRK11028 6-phosphogluconolacto 99.5 4.6E-11 9.9E-16 140.6 34.1 276 91-424 6-305 (330)
160 PRK05137 tolB translocation pr 99.5 8.3E-12 1.8E-16 152.6 28.8 205 98-333 183-390 (435)
161 PRK03629 tolB translocation pr 99.5 2.6E-12 5.7E-17 156.5 24.1 221 22-282 200-427 (429)
162 KOG2055 WD40 repeat protein [G 99.5 1.4E-12 3.1E-17 148.7 19.9 247 22-306 259-513 (514)
163 KOG0294 WD40 repeat-containing 99.5 3.8E-12 8.3E-17 139.5 22.4 227 22-306 45-282 (362)
164 KOG0639 Transducin-like enhanc 99.5 1.4E-12 3E-17 149.1 19.6 276 75-422 419-703 (705)
165 PRK11028 6-phosphogluconolacto 99.5 7.6E-11 1.6E-15 138.7 35.3 273 33-344 2-298 (330)
166 KOG3617 WD40 and TPR repeat-co 99.5 1.5E-09 3.2E-14 130.6 44.8 70 77-146 61-131 (1416)
167 KOG0267 Microtubule severing p 99.5 1.2E-13 2.7E-18 164.0 10.5 227 24-294 32-260 (825)
168 KOG0268 Sof1-like rRNA process 99.5 4.7E-13 1E-17 148.6 14.2 233 22-305 68-345 (433)
169 PRK01029 tolB translocation pr 99.5 1.4E-11 3E-16 149.8 28.4 233 77-330 186-425 (428)
170 PRK01742 tolB translocation pr 99.5 2.6E-12 5.7E-17 156.6 21.6 215 22-283 205-426 (429)
171 KOG0650 WD40 repeat nucleolar 99.5 8.1E-12 1.8E-16 146.0 24.1 280 167-476 394-732 (733)
172 KOG4378 Nuclear protein COP1 [ 99.5 4.7E-12 1E-16 144.9 21.5 297 90-462 5-308 (673)
173 KOG0646 WD40 repeat protein [G 99.4 5.3E-12 1.2E-16 144.6 20.7 209 75-306 81-308 (476)
174 KOG3616 Selective LIM binding 99.4 1.3E-12 2.9E-17 153.8 15.2 157 947-1108 664-822 (1636)
175 KOG4283 Transcription-coupled 99.4 6.2E-11 1.3E-15 128.7 26.5 228 114-425 41-278 (397)
176 PRK04922 tolB translocation pr 99.4 9.7E-12 2.1E-16 151.8 22.5 221 22-282 205-432 (433)
177 PRK02889 tolB translocation pr 99.4 1.2E-11 2.6E-16 150.7 23.2 221 22-282 197-424 (427)
178 PF08662 eIF2A: Eukaryotic tra 99.4 1.1E-11 2.4E-16 134.6 20.5 118 174-306 60-180 (194)
179 KOG0267 Microtubule severing p 99.4 4.1E-13 8.9E-18 159.6 9.3 215 77-332 30-251 (825)
180 PRK00178 tolB translocation pr 99.4 4.5E-11 9.8E-16 145.9 27.4 203 76-306 199-407 (430)
181 PRK04792 tolB translocation pr 99.4 1.7E-11 3.8E-16 150.0 23.4 223 76-329 218-446 (448)
182 KOG0307 Vesicle coat complex C 99.4 1.6E-12 3.4E-17 162.3 14.1 251 22-310 66-332 (1049)
183 KOG1445 Tumor-specific antigen 99.4 4.1E-12 8.9E-17 148.2 15.3 203 83-306 587-799 (1012)
184 TIGR02800 propeller_TolB tol-p 99.4 6.6E-11 1.4E-15 143.6 25.9 202 75-304 189-396 (417)
185 KOG2139 WD40 repeat protein [G 99.4 6.1E-11 1.3E-15 132.0 22.8 201 75-294 98-302 (445)
186 KOG2919 Guanine nucleotide-bin 99.3 1.2E-10 2.6E-15 128.0 22.2 278 22-333 51-354 (406)
187 KOG1273 WD40 repeat protein [G 99.3 1.9E-10 4.1E-15 126.1 22.9 247 23-305 26-322 (405)
188 KOG0300 WD40 repeat-containing 99.3 8.7E-11 1.9E-15 128.2 20.1 275 171-478 146-475 (481)
189 KOG1963 WD40 repeat protein [G 99.3 2E-09 4.4E-14 132.0 34.2 335 24-425 164-540 (792)
190 KOG1523 Actin-related protein 99.3 1.5E-10 3.2E-15 127.6 21.9 250 174-468 11-270 (361)
191 KOG2110 Uncharacterized conser 99.3 5.8E-10 1.3E-14 125.1 26.4 239 22-306 7-249 (391)
192 KOG1009 Chromatin assembly com 99.3 2.3E-10 5.1E-15 129.4 23.5 273 34-343 28-365 (434)
193 KOG0302 Ribosome Assembly prot 99.3 8.2E-11 1.8E-15 131.7 19.6 198 76-305 152-378 (440)
194 KOG0303 Actin-binding protein 99.3 1E-10 2.3E-15 131.4 19.8 228 75-332 81-322 (472)
195 PRK01029 tolB translocation pr 99.3 5.1E-10 1.1E-14 136.2 27.0 210 97-333 165-384 (428)
196 KOG0771 Prolactin regulatory e 99.3 3.4E-11 7.4E-16 137.1 15.5 198 79-304 148-353 (398)
197 PRK04792 tolB translocation pr 99.3 1.8E-10 4E-15 141.0 22.4 219 22-282 219-446 (448)
198 KOG0302 Ribosome Assembly prot 99.3 2.6E-10 5.7E-15 127.7 21.2 269 115-420 150-435 (440)
199 KOG1007 WD repeat protein TSSC 99.3 1.5E-10 3.2E-15 125.7 18.3 292 96-423 39-361 (370)
200 TIGR02800 propeller_TolB tol-p 99.2 1.1E-09 2.5E-14 132.8 26.9 206 98-334 171-379 (417)
201 KOG0270 WD40 repeat-containing 99.2 7.1E-10 1.5E-14 126.8 22.5 297 1-340 101-439 (463)
202 KOG1445 Tumor-specific antigen 99.2 4.4E-11 9.5E-16 139.8 12.7 164 22-210 629-798 (1012)
203 KOG1034 Transcriptional repres 99.2 9E-10 1.9E-14 121.7 22.0 312 114-476 36-380 (385)
204 PRK00178 tolB translocation pr 99.2 1.9E-09 4.2E-14 131.7 27.6 205 98-333 180-387 (430)
205 KOG0321 WD40 repeat-containing 99.2 5.4E-10 1.2E-14 132.1 21.3 259 24-307 56-349 (720)
206 KOG0303 Actin-binding protein 99.2 5.9E-10 1.3E-14 125.5 19.7 211 111-347 76-291 (472)
207 KOG0646 WD40 repeat protein [G 99.2 9.1E-10 2E-14 126.6 21.6 219 174-430 82-314 (476)
208 KOG1523 Actin-related protein 99.2 2.5E-10 5.3E-15 125.9 15.9 195 76-306 11-237 (361)
209 KOG1963 WD40 repeat protein [G 99.2 8.1E-09 1.8E-13 126.9 29.9 258 22-305 207-487 (792)
210 KOG4378 Nuclear protein COP1 [ 99.2 3.1E-09 6.8E-14 122.2 24.6 290 35-403 5-305 (673)
211 KOG0270 WD40 repeat-containing 99.2 6.7E-10 1.5E-14 126.9 19.2 240 31-308 191-452 (463)
212 KOG1007 WD repeat protein TSSC 99.2 2.7E-09 5.8E-14 116.1 22.6 201 75-305 63-289 (370)
213 KOG0321 WD40 repeat-containing 99.2 1.3E-09 2.9E-14 128.9 21.1 274 121-424 54-392 (720)
214 KOG4328 WD40 protein [Function 99.2 1.7E-09 3.6E-14 124.1 21.1 250 75-344 186-489 (498)
215 PF10282 Lactonase: Lactonase, 99.2 1E-07 2.2E-12 113.2 37.4 250 22-309 38-328 (345)
216 PF10282 Lactonase: Lactonase, 99.2 1.1E-07 2.4E-12 112.8 37.4 283 34-344 1-316 (345)
217 KOG2394 WD40 protein DMR-N9 [G 99.2 6.5E-10 1.4E-14 129.2 17.2 170 32-232 185-384 (636)
218 COG2706 3-carboxymuconate cycl 99.2 1.3E-07 2.9E-12 106.9 35.1 308 34-385 4-342 (346)
219 PRK04043 tolB translocation pr 99.1 6.5E-09 1.4E-13 126.0 26.2 203 76-305 188-400 (419)
220 KOG2139 WD40 repeat protein [G 99.1 2.7E-09 5.9E-14 119.1 20.1 252 117-413 99-365 (445)
221 KOG1587 Cytoplasmic dynein int 99.1 1.7E-08 3.8E-13 123.9 27.6 268 96-424 221-517 (555)
222 KOG1034 Transcriptional repres 99.1 1.1E-08 2.3E-13 113.4 22.8 230 76-344 90-377 (385)
223 PF02239 Cytochrom_D1: Cytochr 99.1 8.9E-08 1.9E-12 114.2 31.1 324 33-425 6-349 (369)
224 KOG2111 Uncharacterized conser 99.1 1.7E-07 3.6E-12 104.0 30.5 238 23-306 8-257 (346)
225 PRK04043 tolB translocation pr 99.1 1.4E-08 3.1E-13 123.0 24.5 205 22-263 189-405 (419)
226 PF02239 Cytochrom_D1: Cytochr 99.1 1.7E-07 3.7E-12 111.8 33.0 318 91-477 10-345 (369)
227 KOG0290 Conserved WD40 repeat- 99.1 2.7E-08 5.9E-13 108.5 23.5 287 77-419 46-361 (364)
228 KOG1188 WD40 repeat protein [G 99.0 5E-09 1.1E-13 116.6 17.4 288 88-423 41-346 (376)
229 KOG2394 WD40 protein DMR-N9 [G 99.0 4.9E-09 1.1E-13 122.1 14.7 122 22-144 221-360 (636)
230 KOG0771 Prolactin regulatory e 99.0 9.9E-09 2.1E-13 117.4 16.8 179 120-333 148-338 (398)
231 KOG2110 Uncharacterized conser 99.0 9.5E-09 2.1E-13 115.6 16.3 152 26-211 91-249 (391)
232 KOG2315 Predicted translation 98.9 3.3E-07 7.1E-12 108.2 27.2 246 77-339 75-373 (566)
233 KOG0322 G-protein beta subunit 98.9 1.7E-08 3.8E-13 108.9 15.3 253 75-422 14-322 (323)
234 KOG0642 Cell-cycle nuclear pro 98.9 1E-08 2.3E-13 120.4 14.8 209 22-257 296-560 (577)
235 KOG4227 WD40 repeat protein [G 98.9 7.7E-08 1.7E-12 108.0 20.5 284 111-423 52-387 (609)
236 KOG0322 G-protein beta subunit 98.9 8.1E-09 1.7E-13 111.4 9.9 157 76-256 151-321 (323)
237 KOG0642 Cell-cycle nuclear pro 98.9 2.1E-08 4.6E-13 117.9 13.9 240 75-344 294-555 (577)
238 KOG1188 WD40 repeat protein [G 98.8 1.9E-07 4E-12 104.4 20.3 193 201-426 49-245 (376)
239 KOG1517 Guanine nucleotide bin 98.8 4.8E-07 1E-11 112.5 25.3 295 77-424 1066-1382(1387)
240 KOG1587 Cytoplasmic dynein int 98.8 2.4E-07 5.1E-12 114.1 22.9 252 22-305 244-516 (555)
241 KOG2314 Translation initiation 98.8 3.4E-06 7.4E-11 99.2 30.8 322 88-479 179-525 (698)
242 KOG0290 Conserved WD40 repeat- 98.8 5.3E-07 1.2E-11 98.7 22.3 266 176-467 47-356 (364)
243 PF04053 Coatomer_WDAD: Coatom 98.8 9.5E-06 2.1E-10 98.6 34.2 91 605-729 194-284 (443)
244 PLN02919 haloacid dehalogenase 98.8 3.1E-06 6.8E-11 113.3 32.6 261 22-307 569-890 (1057)
245 KOG0644 Uncharacterized conser 98.8 1.2E-08 2.7E-13 123.4 8.9 255 22-306 192-469 (1113)
246 KOG4328 WD40 protein [Function 98.8 1.3E-07 2.7E-12 109.0 16.2 200 22-256 281-493 (498)
247 KOG2315 Predicted translation 98.7 8.2E-06 1.8E-10 96.7 30.4 323 98-478 12-389 (566)
248 KOG4227 WD40 repeat protein [G 98.7 8.9E-07 1.9E-11 99.6 21.1 275 171-477 54-385 (609)
249 COG2706 3-carboxymuconate cycl 98.7 5.2E-05 1.1E-09 86.4 32.4 248 22-306 41-322 (346)
250 KOG2111 Uncharacterized conser 98.6 3.1E-05 6.7E-10 86.4 29.4 231 77-348 7-254 (346)
251 COG5290 IkappaB kinase complex 98.6 1.9E-06 4.1E-11 104.3 21.5 242 879-1146 864-1116(1243)
252 COG5354 Uncharacterized protei 98.6 1.1E-05 2.5E-10 94.4 27.3 325 101-478 16-394 (561)
253 COG4946 Uncharacterized protei 98.6 6.3E-05 1.4E-09 87.2 32.8 177 86-292 331-508 (668)
254 KOG1240 Protein kinase contain 98.6 2.9E-06 6.3E-11 107.4 23.7 217 76-306 1049-1335(1431)
255 KOG0649 WD40 repeat protein [G 98.6 1.3E-05 2.7E-10 86.2 24.8 202 78-308 13-238 (325)
256 KOG2114 Vacuolar assembly/sort 98.6 0.0022 4.8E-08 79.9 47.2 98 368-478 93-200 (933)
257 KOG2321 WD40 repeat protein [G 98.6 4.4E-07 9.4E-12 106.8 14.4 186 22-243 135-334 (703)
258 PF08450 SGL: SMP-30/Gluconola 98.6 6E-05 1.3E-09 85.0 31.6 219 24-292 3-245 (246)
259 KOG4547 WD40 repeat-containing 98.6 7.2E-06 1.6E-10 97.8 23.5 131 86-241 69-208 (541)
260 KOG0974 WD-repeat protein WDR6 98.6 9.8E-07 2.1E-11 110.6 16.7 196 76-306 88-289 (967)
261 KOG0649 WD40 repeat protein [G 98.5 5.5E-05 1.2E-09 81.5 26.4 256 23-329 13-295 (325)
262 KOG1354 Serine/threonine prote 98.5 2.2E-06 4.7E-11 95.9 16.5 213 75-305 25-301 (433)
263 PF00930 DPPIV_N: Dipeptidyl p 98.5 6.2E-05 1.3E-09 89.8 30.2 193 84-306 1-219 (353)
264 KOG1272 WD40-repeat-containing 98.5 5.5E-07 1.2E-11 103.9 11.7 196 76-308 130-326 (545)
265 KOG0644 Uncharacterized conser 98.5 5.2E-07 1.1E-11 109.8 12.0 266 111-424 186-469 (1113)
266 TIGR02658 TTQ_MADH_Hv methylam 98.5 0.0002 4.4E-09 84.3 33.0 277 97-425 27-332 (352)
267 PF15492 Nbas_N: Neuroblastoma 98.5 6E-05 1.3E-09 83.7 26.3 145 122-294 3-169 (282)
268 COG0823 TolB Periplasmic compo 98.5 4.9E-06 1.1E-10 100.7 19.0 193 76-294 193-391 (425)
269 KOG2314 Translation initiation 98.4 6.1E-05 1.3E-09 89.0 25.6 231 76-333 250-506 (698)
270 COG5354 Uncharacterized protei 98.4 9.7E-05 2.1E-09 86.9 26.6 347 22-468 34-420 (561)
271 KOG1517 Guanine nucleotide bin 98.4 1E-05 2.2E-10 101.1 19.2 244 32-306 1123-1382(1387)
272 KOG1354 Serine/threonine prote 98.4 4.5E-06 9.8E-11 93.4 14.6 297 116-468 25-350 (433)
273 PF07433 DUF1513: Protein of u 98.3 0.00025 5.5E-09 80.9 27.8 214 76-309 5-251 (305)
274 TIGR02658 TTQ_MADH_Hv methylam 98.3 0.00025 5.5E-09 83.5 28.7 247 33-308 13-333 (352)
275 PLN02919 haloacid dehalogenase 98.3 7.2E-05 1.6E-09 100.5 27.1 214 22-260 625-890 (1057)
276 KOG2321 WD40 repeat protein [G 98.3 9.3E-05 2E-09 87.8 23.7 278 75-422 51-342 (703)
277 KOG1310 WD40 repeat protein [G 98.3 4.7E-06 1E-10 97.7 12.8 236 22-308 52-306 (758)
278 KOG3881 Uncharacterized conser 98.3 4.1E-05 8.8E-10 87.5 19.7 201 76-306 106-321 (412)
279 KOG0974 WD-repeat protein WDR6 98.3 1.5E-05 3.2E-10 100.3 16.8 193 28-260 95-290 (967)
280 COG4946 Uncharacterized protei 98.2 0.00019 4.1E-09 83.4 22.6 148 76-242 360-508 (668)
281 KOG1240 Protein kinase contain 98.2 0.00018 4E-09 91.8 23.8 179 102-305 1034-1225(1431)
282 KOG1310 WD40 repeat protein [G 98.1 4.4E-05 9.5E-10 89.8 15.3 157 168-341 45-222 (758)
283 KOG1272 WD40-repeat-containing 98.1 1.1E-05 2.4E-10 93.4 10.2 228 23-303 132-360 (545)
284 KOG1912 WD40 repeat protein [G 98.1 0.0016 3.4E-08 79.9 27.9 130 78-232 18-165 (1062)
285 COG0823 TolB Periplasmic compo 98.1 7.6E-05 1.6E-09 90.5 17.1 170 98-294 174-347 (425)
286 PF07433 DUF1513: Protein of u 98.1 0.0015 3.1E-08 74.9 25.9 232 22-291 6-275 (305)
287 PF11768 DUF3312: Protein of u 98.0 0.00014 3E-09 87.9 17.1 81 75-156 259-339 (545)
288 PF08450 SGL: SMP-30/Gluconola 98.0 0.0066 1.4E-07 68.5 30.1 229 80-339 4-244 (246)
289 KOG2066 Vacuolar assembly/sort 98.0 0.035 7.5E-07 69.4 36.9 209 869-1103 449-703 (846)
290 KOG4547 WD40 repeat-containing 98.0 0.00047 1E-08 82.8 20.5 188 85-306 3-221 (541)
291 KOG1409 Uncharacterized conser 97.9 0.0012 2.7E-08 74.6 21.8 237 23-307 27-272 (404)
292 PF15492 Nbas_N: Neuroblastoma 97.9 0.0021 4.6E-08 71.7 22.5 199 74-307 42-261 (282)
293 PLN03218 maturation of RBCL 1; 97.9 0.0069 1.5E-07 81.4 31.3 29 705-733 369-400 (1060)
294 COG5170 CDC55 Serine/threonine 97.9 0.00017 3.7E-09 79.9 13.3 216 75-307 26-311 (460)
295 PF00930 DPPIV_N: Dipeptidyl p 97.7 0.004 8.8E-08 74.3 24.0 246 76-333 43-341 (353)
296 KOG1912 WD40 repeat protein [G 97.7 0.0037 8E-08 76.9 22.5 151 176-350 18-186 (1062)
297 KOG3881 Uncharacterized conser 97.7 0.0017 3.6E-08 74.7 18.0 187 32-257 115-319 (412)
298 KOG1334 WD40 repeat protein [G 97.7 0.00036 7.8E-09 81.7 12.8 287 75-424 142-467 (559)
299 KOG4532 WD40-like repeat conta 97.7 0.004 8.6E-08 68.5 19.6 226 33-294 85-324 (344)
300 KOG3914 WD repeat protein WDR4 97.6 0.00058 1.3E-08 78.7 13.1 120 77-219 109-232 (390)
301 KOG1334 WD40 repeat protein [G 97.6 0.00068 1.5E-08 79.5 13.7 253 22-305 144-466 (559)
302 COG5170 CDC55 Serine/threonine 97.6 0.00097 2.1E-08 74.1 14.0 297 116-468 26-358 (460)
303 PLN03081 pentatricopeptide (PP 97.5 0.006 1.3E-07 79.6 21.7 159 937-1102 364-553 (697)
304 PLN03081 pentatricopeptide (PP 97.5 0.038 8.2E-07 72.2 29.0 158 943-1103 302-488 (697)
305 KOG2114 Vacuolar assembly/sort 97.5 0.0029 6.2E-08 79.0 17.1 140 962-1106 337-492 (933)
306 KOG3914 WD repeat protein WDR4 97.4 0.0013 2.8E-08 76.0 12.9 158 117-308 63-226 (390)
307 PF04053 Coatomer_WDAD: Coatom 97.4 0.02 4.3E-07 70.1 23.4 140 77-258 34-173 (443)
308 KOG4190 Uncharacterized conser 97.4 0.00079 1.7E-08 79.1 10.3 167 111-308 731-909 (1034)
309 PF10647 Gmad1: Lipoprotein Lp 97.4 0.008 1.7E-07 68.4 18.4 149 118-294 25-187 (253)
310 KOG2066 Vacuolar assembly/sort 97.3 0.0022 4.7E-08 79.5 13.9 130 84-238 80-221 (846)
311 PLN03218 maturation of RBCL 1; 97.3 0.037 8E-07 74.6 26.8 256 809-1102 485-779 (1060)
312 PF06977 SdiA-regulated: SdiA- 97.3 0.019 4E-07 64.9 20.3 193 22-240 23-239 (248)
313 PF11768 DUF3312: Protein of u 97.3 0.0024 5.2E-08 77.5 13.8 109 77-209 207-328 (545)
314 PRK13616 lipoprotein LpqB; Pro 97.3 0.014 3E-07 74.0 21.0 181 76-282 350-550 (591)
315 PF00400 WD40: WD domain, G-be 97.3 0.00068 1.5E-08 53.2 5.8 34 111-144 6-39 (39)
316 PRK13616 lipoprotein LpqB; Pro 97.2 0.005 1.1E-07 77.9 16.4 150 117-293 350-516 (591)
317 PF02897 Peptidase_S9_N: Proly 97.2 0.12 2.6E-06 63.0 28.0 204 78-305 126-357 (414)
318 PF00400 WD40: WD domain, G-be 97.2 0.00077 1.7E-08 52.9 5.7 39 212-256 1-39 (39)
319 PRK11788 tetratricopeptide rep 97.2 0.031 6.7E-07 67.1 22.3 164 938-1102 114-307 (389)
320 KOG4626 O-linked N-acetylgluco 97.2 0.025 5.5E-07 68.6 19.9 141 976-1138 241-412 (966)
321 TIGR02917 PEP_TPR_lipo putativ 97.2 0.059 1.3E-06 71.2 26.2 183 916-1101 445-659 (899)
322 TIGR00990 3a0801s09 mitochondr 97.1 0.0072 1.6E-07 77.7 16.7 180 915-1099 378-590 (615)
323 TIGR02917 PEP_TPR_lipo putativ 97.1 0.033 7.2E-07 73.5 23.3 160 939-1100 541-726 (899)
324 PRK11788 tetratricopeptide rep 97.1 0.016 3.4E-07 69.6 18.1 187 908-1100 17-237 (389)
325 PLN03077 Protein ECB2; Provisi 97.0 0.084 1.8E-06 70.7 25.8 97 944-1041 367-480 (857)
326 KOG0280 Uncharacterized conser 97.0 0.037 8.1E-07 61.9 18.2 207 95-332 44-266 (339)
327 PF14938 SNAP: Soluble NSF att 97.0 0.004 8.7E-08 72.0 11.1 129 946-1102 30-180 (282)
328 PRK10049 pgaA outer membrane p 96.9 0.065 1.4E-06 70.8 23.3 106 996-1101 278-417 (765)
329 PRK15174 Vi polysaccharide exp 96.9 0.081 1.8E-06 68.5 23.6 159 941-1102 187-377 (656)
330 PLN03077 Protein ECB2; Provisi 96.9 0.057 1.2E-06 72.3 22.9 155 939-1100 530-714 (857)
331 PRK11447 cellulose synthase su 96.9 0.052 1.1E-06 75.0 22.8 182 915-1099 508-733 (1157)
332 TIGR00990 3a0801s09 mitochondr 96.9 0.1 2.3E-06 67.1 23.9 185 913-1100 342-565 (615)
333 KOG1064 RAVE (regulator of V-A 96.9 0.0034 7.3E-08 83.3 9.9 185 76-307 2209-2400(2439)
334 KOG0309 Conserved WD40 repeat- 96.8 0.011 2.3E-07 72.6 13.1 275 115-424 23-340 (1081)
335 KOG1840 Kinesin light chain [C 96.8 0.074 1.6E-06 65.8 20.6 138 938-1075 206-392 (508)
336 KOG4532 WD40-like repeat conta 96.8 0.044 9.5E-07 60.6 16.3 128 200-340 136-271 (344)
337 PF06977 SdiA-regulated: SdiA- 96.8 0.5 1.1E-05 53.5 25.4 206 174-419 22-246 (248)
338 PF10647 Gmad1: Lipoprotein Lp 96.8 0.13 2.8E-06 58.6 21.0 147 77-242 25-185 (253)
339 TIGR03300 assembly_YfgL outer 96.8 1.9 4.2E-05 51.8 32.3 98 31-144 64-161 (377)
340 COG3391 Uncharacterized conser 96.7 0.3 6.4E-06 59.1 24.8 200 22-258 75-283 (381)
341 KOG0280 Uncharacterized conser 96.7 0.046 9.9E-07 61.3 15.8 184 24-243 125-322 (339)
342 KOG2247 WD40 repeat-containing 96.7 9.2E-05 2E-09 86.8 -5.2 156 933-1098 47-219 (615)
343 KOG0547 Translocase of outer m 96.7 0.017 3.6E-07 68.6 12.8 129 890-1022 344-494 (606)
344 PF04841 Vps16_N: Vps16, N-ter 96.6 0.34 7.3E-06 59.2 24.5 189 76-290 81-277 (410)
345 KOG4640 Anaphase-promoting com 96.6 0.0064 1.4E-07 73.9 9.3 80 115-216 19-98 (665)
346 PRK11447 cellulose synthase su 96.5 0.077 1.7E-06 73.3 19.9 158 937-1101 467-661 (1157)
347 KOG1897 Damage-specific DNA bi 96.5 4.9 0.00011 52.2 43.0 344 74-479 486-856 (1096)
348 PF04840 Vps16_C: Vps16, C-ter 96.5 0.46 1E-05 55.9 23.1 83 1023-1112 215-297 (319)
349 PF14583 Pectate_lyase22: Olig 96.4 1.8 3.8E-05 51.7 27.6 246 26-294 41-372 (386)
350 PF14870 PSII_BNR: Photosynthe 96.4 2.2 4.7E-05 49.8 28.1 226 22-294 18-254 (302)
351 TIGR03300 assembly_YfgL outer 96.4 0.92 2E-05 54.5 26.3 227 31-307 104-340 (377)
352 PF12234 Rav1p_C: RAVE protein 96.3 0.11 2.3E-06 65.5 17.7 141 962-1105 353-507 (631)
353 PF04097 Nic96: Nup93/Nic96; 96.3 0.085 1.8E-06 67.6 17.2 128 973-1104 394-532 (613)
354 PF00780 CNH: CNH domain; Int 96.3 1.6 3.5E-05 49.8 26.3 228 27-317 2-265 (275)
355 PF14938 SNAP: Soluble NSF att 96.3 0.17 3.6E-06 58.6 18.0 28 1049-1076 154-181 (282)
356 PF06433 Me-amine-dh_H: Methyl 96.3 0.92 2E-05 53.1 23.6 128 97-243 17-156 (342)
357 PRK02888 nitrous-oxide reducta 96.2 0.17 3.7E-06 63.3 18.3 178 81-306 198-405 (635)
358 KOG4626 O-linked N-acetylgluco 96.2 0.079 1.7E-06 64.5 14.6 152 939-1097 260-455 (966)
359 KOG3621 WD40 repeat-containing 96.2 0.28 6.1E-06 60.9 19.6 109 22-142 35-150 (726)
360 PF04841 Vps16_N: Vps16, N-ter 96.2 3.1 6.6E-05 50.9 29.0 51 98-149 62-112 (410)
361 PF13360 PQQ_2: PQQ-like domai 96.2 0.87 1.9E-05 50.5 22.6 219 41-308 2-233 (238)
362 KOG1064 RAVE (regulator of V-A 96.1 0.03 6.5E-07 74.9 11.8 186 88-306 2181-2367(2439)
363 KOG1840 Kinesin light chain [C 96.0 0.14 3E-06 63.4 16.5 65 975-1039 305-390 (508)
364 PF08596 Lgl_C: Lethal giant l 96.0 1.2 2.6E-05 54.1 24.2 250 22-305 3-335 (395)
365 KOG1645 RING-finger-containing 96.0 0.3 6.6E-06 57.0 17.8 150 114-293 191-351 (463)
366 KOG1008 Uncharacterized conser 96.0 0.0035 7.7E-08 75.9 2.6 200 76-305 57-275 (783)
367 KOG1832 HIV-1 Vpr-binding prot 96.0 0.0067 1.5E-07 75.3 4.9 182 76-308 1102-1294(1516)
368 PRK15174 Vi polysaccharide exp 96.0 0.87 1.9E-05 59.2 24.5 145 940-1088 221-398 (656)
369 KOG2247 WD40 repeat-containing 96.0 0.0026 5.7E-08 75.0 1.3 164 11-189 66-267 (615)
370 COG3391 Uncharacterized conser 96.0 3.3 7.1E-05 50.1 27.8 243 22-307 32-285 (381)
371 TIGR02521 type_IV_pilW type IV 95.9 0.089 1.9E-06 57.0 13.1 25 992-1016 101-125 (234)
372 PRK02888 nitrous-oxide reducta 95.9 0.22 4.7E-06 62.4 17.1 101 96-211 295-405 (635)
373 KOG4640 Anaphase-promoting com 95.9 0.027 5.8E-07 68.7 9.0 73 225-308 23-95 (665)
374 PF02897 Peptidase_S9_N: Proly 95.8 0.13 2.8E-06 62.8 14.9 126 177-306 127-261 (414)
375 PF15390 DUF4613: Domain of un 95.8 3.6 7.8E-05 50.9 26.1 109 22-137 58-176 (671)
376 COG3204 Uncharacterized protei 95.8 0.3 6.6E-06 55.3 16.1 141 78-242 45-200 (316)
377 PF13429 TPR_15: Tetratricopep 95.8 0.019 4.2E-07 66.0 7.3 196 936-1136 13-236 (280)
378 PF13360 PQQ_2: PQQ-like domai 95.7 1.6 3.5E-05 48.3 22.1 190 31-258 35-230 (238)
379 PF12931 Sec16_C: Sec23-bindin 95.6 0.082 1.8E-06 61.2 11.8 119 954-1078 5-143 (284)
380 KOG0309 Conserved WD40 repeat- 95.5 0.048 1E-06 67.1 9.4 193 22-257 26-231 (1081)
381 KOG1409 Uncharacterized conser 95.4 1 2.2E-05 51.8 18.7 233 76-344 25-264 (404)
382 PF14870 PSII_BNR: Photosynthe 95.3 7.8 0.00017 45.3 26.7 218 27-294 66-296 (302)
383 KOG2076 RNA polymerase III tra 95.2 0.24 5.2E-06 63.2 14.5 117 985-1102 203-341 (895)
384 PF12234 Rav1p_C: RAVE protein 95.2 0.37 8E-06 60.9 16.2 106 985-1091 447-555 (631)
385 KOG0882 Cyclophilin-related pe 95.2 0.13 2.8E-06 60.5 11.3 191 86-308 19-234 (558)
386 KOG0985 Vesicle coat protein c 95.2 1.1 2.3E-05 57.8 19.6 155 942-1102 1115-1304(1666)
387 COG3386 Gluconolactonase [Carb 95.2 2.7 5.8E-05 49.3 22.2 233 23-293 27-276 (307)
388 KOG4190 Uncharacterized conser 95.2 0.16 3.5E-06 60.6 11.8 202 27-264 743-955 (1034)
389 PF14583 Pectate_lyase22: Olig 95.1 10 0.00022 45.4 27.3 192 82-292 42-257 (386)
390 KOG1585 Protein required for f 95.0 1.2 2.5E-05 49.5 17.1 108 984-1098 45-171 (308)
391 COG3386 Gluconolactonase [Carb 95.0 4 8.7E-05 47.8 22.8 145 82-242 31-182 (307)
392 KOG2003 TPR repeat-containing 94.9 11 0.00024 44.9 26.6 133 943-1099 502-648 (840)
393 PF15390 DUF4613: Domain of un 94.9 0.71 1.5E-05 56.7 16.5 150 223-422 20-185 (671)
394 COG2956 Predicted N-acetylgluc 94.9 1.8 4E-05 49.8 18.7 136 987-1123 104-262 (389)
395 PRK10049 pgaA outer membrane p 94.9 6.9 0.00015 51.9 27.5 157 942-1100 248-450 (765)
396 KOG1586 Protein required for f 94.9 0.74 1.6E-05 50.7 14.9 43 1051-1093 101-143 (288)
397 PRK10115 protease 2; Provision 94.8 4.2 9E-05 53.2 24.8 58 77-137 128-192 (686)
398 PF13429 TPR_15: Tetratricopep 94.6 0.071 1.5E-06 61.4 7.3 161 942-1135 88-269 (280)
399 KOG2076 RNA polymerase III tra 94.5 7.4 0.00016 50.4 24.6 121 907-1028 340-508 (895)
400 PF07995 GSDH: Glucose / Sorbo 94.5 2.4 5.3E-05 50.2 20.0 159 119-290 4-199 (331)
401 KOG1008 Uncharacterized conser 94.5 0.027 5.9E-07 68.6 3.4 194 22-257 60-274 (783)
402 smart00320 WD40 WD40 repeats. 94.4 0.094 2E-06 38.5 5.3 33 112-144 8-40 (40)
403 PRK09782 bacteriophage N4 rece 94.4 4.1 8.9E-05 55.1 23.8 159 939-1101 517-701 (987)
404 KOG2034 Vacuolar sorting prote 94.4 0.42 9.2E-06 61.0 13.6 57 1059-1116 513-569 (911)
405 KOG3621 WD40 repeat-containing 94.1 0.14 3E-06 63.5 8.4 114 78-209 36-153 (726)
406 PRK12370 invasion protein regu 94.0 0.96 2.1E-05 57.5 16.2 110 992-1102 340-466 (553)
407 KOG1275 PAB-dependent poly(A) 94.0 0.7 1.5E-05 58.9 14.1 187 86-305 146-342 (1118)
408 PRK10115 protease 2; Provision 93.9 10 0.00023 49.5 25.4 120 118-256 128-253 (686)
409 KOG2376 Signal recognition par 93.9 1.2 2.6E-05 54.8 15.3 130 944-1075 59-200 (652)
410 PF12894 Apc4_WD40: Anaphase-p 93.8 0.13 2.8E-06 42.7 5.1 33 116-148 11-43 (47)
411 PF12894 Apc4_WD40: Anaphase-p 93.7 0.15 3.2E-06 42.4 5.3 33 76-108 12-44 (47)
412 KOG1832 HIV-1 Vpr-binding prot 93.7 0.1 2.2E-06 65.5 6.2 145 169-338 1097-1247(1516)
413 PRK10747 putative protoheme IX 93.5 3.2 6.8E-05 50.6 18.8 160 940-1101 127-318 (398)
414 PF13449 Phytase-like: Esteras 93.4 3.4 7.5E-05 48.9 18.5 110 178-289 89-231 (326)
415 COG3490 Uncharacterized protei 93.4 1.9 4E-05 48.8 14.7 113 180-295 120-248 (366)
416 KOG1586 Protein required for f 93.4 0.98 2.1E-05 49.7 12.2 80 1002-1096 26-112 (288)
417 KOG1916 Nuclear protein, conta 93.4 0.086 1.9E-06 66.4 4.9 92 43-144 156-263 (1283)
418 PRK12370 invasion protein regu 93.4 1.5 3.3E-05 55.7 16.4 86 992-1078 374-469 (553)
419 KOG0882 Cyclophilin-related pe 93.4 0.52 1.1E-05 55.7 10.9 196 117-341 10-222 (558)
420 TIGR00540 hemY_coli hemY prote 93.3 0.63 1.4E-05 56.8 12.3 109 933-1042 86-213 (409)
421 PRK10747 putative protoheme IX 93.3 1.4 3E-05 53.7 15.2 108 934-1042 87-213 (398)
422 PF12895 Apc3: Anaphase-promot 93.2 0.12 2.6E-06 48.0 4.6 51 1024-1075 33-83 (84)
423 COG3490 Uncharacterized protei 93.0 1.1 2.5E-05 50.4 12.3 54 82-136 120-181 (366)
424 PRK14574 hmsH outer membrane p 93.0 2.4 5.2E-05 56.1 17.5 186 916-1104 48-257 (822)
425 PLN00033 photosystem II stabil 92.9 28 0.00061 42.4 26.0 255 22-310 89-361 (398)
426 COG3204 Uncharacterized protei 92.9 8.4 0.00018 44.2 19.0 166 22-217 87-269 (316)
427 PF07995 GSDH: Glucose / Sorbo 92.8 2.4 5.3E-05 50.2 16.0 58 77-135 3-71 (331)
428 TIGR02604 Piru_Ver_Nterm putat 92.8 2.7 5.8E-05 50.6 16.5 153 76-239 14-200 (367)
429 TIGR03606 non_repeat_PQQ dehyd 92.7 5.3 0.00011 49.2 18.7 53 76-128 30-90 (454)
430 KOG2695 WD40 repeat protein [G 92.7 0.49 1.1E-05 54.3 9.1 131 72-219 249-385 (425)
431 KOG1645 RING-finger-containing 92.4 6.3 0.00014 46.6 17.7 92 251-351 174-267 (463)
432 TIGR03302 OM_YfiO outer membra 92.4 3 6.6E-05 46.3 15.3 22 935-956 37-58 (235)
433 PLN00033 photosystem II stabil 92.3 33 0.00072 41.8 26.7 217 23-291 139-389 (398)
434 PRK15179 Vi polysaccharide bio 92.2 0.71 1.5E-05 59.9 11.0 114 934-1075 89-213 (694)
435 PRK11138 outer membrane biogen 92.1 34 0.00075 41.4 30.2 106 31-144 68-176 (394)
436 COG3063 PilF Tfp pilus assembl 92.0 1.1 2.3E-05 49.5 10.4 101 975-1079 91-202 (250)
437 PF12688 TPR_5: Tetratrico pep 92.0 0.81 1.8E-05 46.0 9.0 59 1008-1076 6-64 (120)
438 PF13424 TPR_12: Tetratricopep 92.0 0.69 1.5E-05 42.0 7.9 60 1010-1075 12-71 (78)
439 PRK15363 pathogenicity island 92.0 2.1 4.6E-05 44.8 12.2 50 1066-1129 106-155 (157)
440 PF12569 NARP1: NMDA receptor- 92.0 33 0.00072 43.2 24.9 56 1051-1107 229-292 (517)
441 KOG1275 PAB-dependent poly(A) 91.9 0.99 2.2E-05 57.6 11.2 157 182-422 184-341 (1118)
442 KOG2079 Vacuolar assembly/sort 91.9 1.9 4.1E-05 56.3 13.8 99 233-344 98-199 (1206)
443 COG2956 Predicted N-acetylgluc 91.7 15 0.00033 42.6 19.3 166 905-1076 86-275 (389)
444 PRK09782 bacteriophage N4 rece 91.7 3 6.5E-05 56.4 16.4 25 1051-1075 248-272 (987)
445 PRK13684 Ycf48-like protein; P 91.7 33 0.00071 40.8 23.6 164 92-292 147-322 (334)
446 KOG4714 Nucleoporin [Nuclear s 91.6 0.29 6.2E-06 54.3 5.6 72 76-147 180-255 (319)
447 TIGR02521 type_IV_pilW type IV 91.6 2.3 4.9E-05 45.9 12.9 52 1051-1102 136-194 (234)
448 PF08553 VID27: VID27 cytoplas 91.5 1.1 2.5E-05 58.1 11.7 101 33-143 543-644 (794)
449 smart00320 WD40 WD40 repeats. 91.5 0.49 1.1E-05 34.4 5.4 38 213-256 3-40 (40)
450 KOG2168 Cullins [Cell cycle co 91.5 1.5 3.3E-05 56.2 12.5 112 987-1102 619-732 (835)
451 PRK13613 lipoprotein LpqB; Pro 91.4 11 0.00025 48.1 20.2 154 118-291 364-525 (599)
452 KOG1126 DNA-binding cell divis 91.3 1.7 3.7E-05 54.2 12.3 30 988-1017 419-448 (638)
453 KOG2003 TPR repeat-containing 91.3 1.2 2.5E-05 52.7 10.3 128 913-1042 535-686 (840)
454 PF00780 CNH: CNH domain; Int 91.2 31 0.00068 39.3 25.7 138 127-306 6-166 (275)
455 PF04097 Nic96: Nup93/Nic96; 91.1 4.2 9E-05 52.4 16.3 150 938-1090 265-453 (613)
456 KOG2002 TPR-containing nuclear 91.0 2.9 6.2E-05 54.3 14.1 70 1030-1099 660-738 (1018)
457 PF14783 BBS2_Mid: Ciliary BBS 90.9 5.4 0.00012 39.4 13.0 96 26-140 8-108 (111)
458 PF12931 Sec16_C: Sec23-bindin 90.7 1.9 4.1E-05 50.0 11.6 94 1012-1107 4-114 (284)
459 PF05096 Glu_cyclase_2: Glutam 90.6 36 0.00078 38.9 22.0 184 23-242 47-250 (264)
460 KOG3081 Vesicle coat complex C 90.6 14 0.0003 41.9 17.3 94 1006-1101 111-231 (299)
461 TIGR00540 hemY_coli hemY prote 90.5 15 0.00033 44.8 19.9 27 1051-1077 264-290 (409)
462 PF09976 TPR_21: Tetratricopep 90.5 1.5 3.3E-05 45.2 9.6 82 934-1016 51-144 (145)
463 PF09976 TPR_21: Tetratricopep 90.4 4.3 9.3E-05 41.8 12.9 84 991-1075 49-143 (145)
464 PRK14574 hmsH outer membrane p 90.3 7.9 0.00017 51.4 18.0 169 933-1104 36-230 (822)
465 KOG2695 WD40 repeat protein [G 90.3 0.86 1.9E-05 52.4 7.9 114 32-155 264-386 (425)
466 COG3071 HemY Uncharacterized e 90.2 3.5 7.5E-05 48.8 12.9 106 936-1042 89-213 (400)
467 PF09295 ChAPs: ChAPs (Chs5p-A 90.0 1 2.3E-05 54.3 8.9 101 922-1045 189-297 (395)
468 KOG1585 Protein required for f 89.9 2.8 6E-05 46.6 11.0 26 1050-1075 150-175 (308)
469 PRK13684 Ycf48-like protein; P 89.9 26 0.00056 41.7 20.5 142 75-242 172-322 (334)
470 PF04840 Vps16_C: Vps16, C-ter 89.7 28 0.00062 41.1 20.3 45 998-1043 245-289 (319)
471 smart00299 CLH Clathrin heavy 89.7 6.7 0.00015 40.0 13.5 43 999-1041 78-121 (140)
472 PF06433 Me-amine-dh_H: Methyl 89.6 17 0.00037 42.9 18.0 248 25-308 40-323 (342)
473 KOG0550 Molecular chaperone (D 89.5 2.2 4.7E-05 50.6 10.5 151 934-1100 172-344 (486)
474 PRK13615 lipoprotein LpqB; Pro 89.5 21 0.00046 45.2 20.1 158 120-305 337-502 (557)
475 PF05694 SBP56: 56kDa selenium 89.4 60 0.0013 39.6 22.6 226 184-428 86-347 (461)
476 PF10168 Nup88: Nuclear pore c 89.3 43 0.00093 43.9 23.2 79 220-306 82-180 (717)
477 PRK14720 transcript cleavage f 89.0 11 0.00025 49.9 17.7 156 968-1147 125-289 (906)
478 PF05096 Glu_cyclase_2: Glutam 89.0 48 0.001 37.9 23.1 188 67-291 36-249 (264)
479 PRK14720 transcript cleavage f 88.8 2.5 5.5E-05 55.7 11.7 94 987-1101 100-193 (906)
480 KOG2002 TPR-containing nuclear 88.6 22 0.00048 46.6 19.2 121 974-1096 660-801 (1018)
481 PRK11138 outer membrane biogen 88.5 66 0.0014 39.0 27.5 64 31-109 119-182 (394)
482 PF12688 TPR_5: Tetratrico pep 88.5 1.7 3.8E-05 43.6 7.9 92 934-1026 4-116 (120)
483 KOG2376 Signal recognition par 87.7 31 0.00067 43.1 18.8 66 1012-1077 184-251 (652)
484 KOG4714 Nucleoporin [Nuclear s 87.5 1.8 3.8E-05 48.3 7.6 71 275-353 182-253 (319)
485 TIGR03075 PQQ_enz_alc_DH PQQ-d 87.0 37 0.0008 43.1 20.3 81 25-109 238-337 (527)
486 TIGR03302 OM_YfiO outer membra 87.0 18 0.00038 40.2 15.8 25 1051-1075 204-228 (235)
487 PRK11189 lipoprotein NlpI; Pro 86.8 11 0.00024 43.8 14.6 77 935-1015 102-190 (296)
488 PRK10803 tol-pal system protei 86.7 3.4 7.3E-05 47.4 9.9 97 947-1075 146-242 (263)
489 PF03178 CPSF_A: CPSF A subuni 86.7 72 0.0016 37.4 24.3 139 87-258 42-202 (321)
490 PF13449 Phytase-like: Esteras 85.8 29 0.00062 41.1 17.5 108 22-136 21-166 (326)
491 PF10602 RPN7: 26S proteasome 85.8 7.3 0.00016 41.9 11.3 92 984-1075 30-138 (177)
492 KOG3630 Nuclear pore complex, 85.5 4 8.7E-05 53.6 10.4 102 75-189 155-259 (1405)
493 PF12657 TFIIIC_delta: Transcr 85.3 2.7 5.9E-05 44.9 7.8 30 118-147 87-122 (173)
494 KOG0985 Vesicle coat protein c 85.3 93 0.002 41.4 21.6 102 990-1091 1104-1247(1666)
495 KOG2079 Vacuolar assembly/sort 85.2 2.4 5.2E-05 55.4 8.2 90 87-189 99-191 (1206)
496 PF14783 BBS2_Mid: Ciliary BBS 85.1 7.2 0.00016 38.5 9.7 65 78-145 2-70 (111)
497 PRK15359 type III secretion sy 85.1 2.9 6.2E-05 43.3 7.6 23 1053-1075 61-83 (144)
498 KOG1155 Anaphase-promoting com 84.9 7.7 0.00017 46.8 11.6 105 989-1096 329-464 (559)
499 KOG2395 Protein involved in va 84.5 4.7 0.0001 49.2 9.7 64 79-144 434-498 (644)
500 TIGR02604 Piru_Ver_Nterm putat 84.3 5.7 0.00012 47.8 10.9 111 22-137 73-204 (367)
No 1
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=100.00 E-value=6.2e-219 Score=1968.92 Aligned_cols=1212 Identities=33% Similarity=0.472 Sum_probs=1008.7
Q ss_pred CcCceecccccccccccccccceeEEeeecCCCEEEEEeCC-C-----cEEEEecccccccccceeeccccccccccCCC
Q 000731 1 MNNLKLCAEVPLNLELQSKDEILQFSALDIEQNRLFFASSA-N-----NIYSAQLSSFQNERASIKTAISAEIEHIDLEP 74 (1325)
Q Consensus 1 MrNL~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~s~~-~-----~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 74 (1325)
||||++.++..++. ...++ .+.+|+...+.++++|+. + .+++.+. .+++ . -.+.++...+
T Consensus 1 MkNL~l~~~~~f~~-~~~~~---~~~~f~l~~~~~~~ass~~~~~~~~~~~ei~~---~~kv--~-----~~~~s~~~~~ 66 (1265)
T KOG1920|consen 1 MKNLKLRYMKTFEI-VAGPG---NAQAFILSPELVTVASSTINELLGLKIFEIES---VGKV--R-----LVAESFLPED 66 (1265)
T ss_pred CCceeeeeeeeecc-cCCCC---chhheeeccccceeeeceeeecccccceeeec---cccc--c-----ceeecccCcC
Confidence 99999999999973 33333 445555556666666551 1 2333333 1121 1 1123333334
Q ss_pred C-CCEEEEEEccCCCEEEEEECCCcEEEEeCCCCeEEEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeee
Q 000731 75 G-DSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYEN 153 (1325)
Q Consensus 75 ~-~~V~~v~~spdg~~La~as~dG~I~lw~~~~~~~e~vg~~~~~I~~~awSPDG~~LA~~s~dgtV~l~s~~~d~~~e~ 153 (1325)
+ +.|++++|+.|+..+|+++++|+|++.|+.+..++++|.+++||.+++||||+++||.+|+.+|+.+||++|+|+.|.
T Consensus 67 gd~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~ 146 (1265)
T KOG1920|consen 67 GDDEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEK 146 (1265)
T ss_pred CCcceEEEEEecccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhcc
Confidence 4 599999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccccC--CCceec------cCcccc---------------------CCCCeEEEEEecCCcEEEEeeccccccCCCCEE
Q 000731 154 PLEELA--EGFDVH------EPELSS---------------------SFSFKSPISWRGDGKYFATLSEFCNSSKLHKRL 204 (1325)
Q Consensus 154 ~l~~~~--~~~~Vs------~tqf~~---------------------~~~~i~~isWspDG~~lAtvss~d~~~~~d~~i 204 (1325)
+++.++ .+++|+ +|||+| .++..++|+||+||+||| ++++.++ .+.|+|
T Consensus 147 ~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fA-Vs~~~~~-~~~Rki 224 (1265)
T KOG1920|consen 147 PLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFA-VSFVESE-TGTRKI 224 (1265)
T ss_pred ccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEE-EEEEecc-CCceeE
Confidence 997666 678886 899992 456778899999999999 8887765 445999
Q ss_pred EEEECCCCceeeeecCCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeCCCceEEEEEeccCCCCc-EEEEEEccC
Q 000731 205 KVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDST-VELLKWNCM 283 (1325)
Q Consensus 205 rVWd~~~G~l~~t~e~~~~~v~~lawsPdG~~IAs~~~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~-V~~laWSpD 283 (1325)
||||+ +|.|.+++++..++.++++|+|+|++||+.+.+++ +.+|+||||||++||+|.++.+.+.. |..|+||.+
T Consensus 225 rV~dr-Eg~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~s---d~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~ 300 (1265)
T KOG1920|consen 225 RVYDR-EGALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTS---DSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSN 300 (1265)
T ss_pred EEecc-cchhhcccCcccccccceeecCCCCeEeeeeecCC---CCcEEEEecCCccccccccCCcccccchheeeecCC
Confidence 99999 69999999999999999999999999999999765 66899999999999999998765544 999999999
Q ss_pred CCeeEEEEccCCCCeEEEEEeeCCeeEEEeEEEEecCCcEEEEEccCCCcEEEEEecCCcEEEEEEEEeeee--CCCeeE
Q 000731 284 SDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAV--MENSTA 361 (1325)
Q Consensus 284 g~~LAs~~~d~~~~~VqLW~~~n~~wylkqel~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~--~d~~~v 361 (1325)
|++||+...+...+.|++|+++||||||||++.|++... ++|||..+++|+++..+|++.+++|.|.++. ++.+.+
T Consensus 301 sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~~~--~~W~p~~~~~L~v~~~sG~~~v~~~~~~t~~s~~d~S~~ 378 (1265)
T KOG1920|consen 301 SDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQKAL--LMWDPVTEKTLHVLRESGQRLVRDFAWTTDRSPNDGSTV 378 (1265)
T ss_pred CCceeeeecccccceEEEEEecCeEEEEEEEEecccccc--ccccCCCceeEEEEecCCcEEEEEEEEeeeccCCCCceE
Confidence 999999887776668999999999999999999976544 9999999999999999999999999999995 788999
Q ss_pred EEEeCCEEEEeecCCcCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccccccCCceeEee-
Q 000731 362 LVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEA- 440 (1325)
Q Consensus 362 ~viDG~~l~lt~l~~~~vPpPm~~~~l~~~~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~~~~~~~~~~~~g~~~~~~~- 440 (1325)
.||||+.+++|||+..+||||||.+.+.++.+ +...|..+...++...+|+.....-.+.+...+.+.++.|..-+
T Consensus 379 ~VIDgs~llvT~ls~~vvPPPM~~y~l~~~~~---~~~~~~~s~~~~~l~~sd~~~~~~~~~~~n~~~~~~~~~f~~f~~ 455 (1265)
T KOG1920|consen 379 YVIDGSRLLVTPLSLAVVPPPMCSYSLLFDSN---IVVMPAESKSALHLFASDIKSRWDGLDFPNSREFLKLKEFSEFIG 455 (1265)
T ss_pred EEEeCCEEEEecchhhcCCCCceeeeecCCcc---ceeecccccCchhhhhcccchhhhhccccCchhhcccccccccch
Confidence 99999999999999999999999988887664 11223322234555555544433333444444444554444111
Q ss_pred eccccccCcEEEEEEecCCeEEEEEecCCCCceEEEEeecccCccccchhhhhhhhcccccccccccccccceeeeeecc
Q 000731 441 CISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGATLNEDGLLGFYAQEIELACSEDHVQGLLTCAGWHAKVSTQIP 520 (1325)
Q Consensus 441 ~~~~~~~~~v~~l~~~~d~~lla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 520 (1325)
+....+.+.++.+.|+.+....+.. .+ ++...+..+.. +++. .+..+.....+.
T Consensus 456 ~~~t~~~~~~~~~~~~~~~~~~v~~-~~-~~~~k~~~~~~----------~~~~--------------~~~~l~~~~v~d 509 (1265)
T KOG1920|consen 456 SLVTPSGHKFYLLEFSVNEDTDVNA-NG-SNRSKIGEVGV----------QETT--------------EHHQLCQVEVYD 509 (1265)
T ss_pred hhhcCCcceEEEEEEecccceeeec-CC-cchhheeeece----------EEcc--------------cccEEEEEEEEe
Confidence 1112233456666666554333322 22 12222222211 1100 111111111111
Q ss_pred cCCcEEEEeeCCCCCceEEEEeeCCeEEEEeccc---cc-cCCCCCCCCCCCCCCCCceeEEEecCCCCCcceEEEEcCC
Q 000731 521 LEGLVIAIAPNNAKKYSAFLQFHGGKISEYMSRV---GL-TGGALTHDDASFPSSCPWMNVVSVGTNGPLKPLLFGLDDG 596 (1325)
Q Consensus 521 ~~~~v~~~~~~~~~~~~~~~q~~dG~v~~~~~~~---~~-~~~~~~~~~~~fp~~c~~~~~~~~~~~~~~~~~~~gL~~~ 596 (1325)
....+.. .++. ....++++.||+|+.++.++ .+ .....+....+.|.+|+|..+..++ + +.+.+||++.
T Consensus 510 ~~~~v~~-~~~~--~h~~~~~~~dg~Iv~~~~~~i~k~i~~~~s~ei~~~~sp~~~~d~~~~~v~--~--~~v~~glts~ 582 (1265)
T KOG1920|consen 510 HCVGVVS-SYNF--EHGLFLLAGDGVIVSLCDNGIHKGIGIAPSLEIVELKSPSPCHDGNVAFVD--E--DTVEFGLTSF 582 (1265)
T ss_pred ccccchh-eeec--cccchhhcCCceEEEcccCCccccccccccccEEEecCCccccccceeeec--c--ccccccccce
Confidence 1111111 1111 12277888899998886432 11 0012233456789999999999887 4 4578999999
Q ss_pred CceeeCCEeeecCceeEEEeccCccccceEEEEEecCCeEEEEEcCccccccccccccccccccCccccccccccccccC
Q 000731 597 GRLHVSGKIVCNNCSSFSFYSKSAGQAMSHLILATKQNLLFIVDISDILHGELALKYENFTHVGNRRKEENISYINIWER 676 (1325)
Q Consensus 597 ~~L~~~~~~~~~~~tSf~~~~~~~~~~~~~Ll~TT~~h~l~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~de~~R~vEr 676 (1325)
|+||+|++.|++||+||.++++ |+++||++|.|+|++|.+..+++++...++ ...+ +||++|.|||
T Consensus 583 ~~~~~n~~~l~~~~~sf~~~se-------~~~~~t~~~~l~~~~l~~~~fd~l~~~~~~----~~~~---~~E~vr~vEr 648 (1265)
T KOG1920|consen 583 GRLFINQILLSSNVSSFFFYSE-------FVLFTTTSHLLQFVCLVDFDFDTLQRVEDD----ESGR---HDERVRNVER 648 (1265)
T ss_pred eEEEEeeEEeecCceEEEEehh-------hhhHHHHHhhhhhheeeeeeecchhhcccc----cccc---cchhhhhhhh
Confidence 9999999999999999999999 999999999999999998888877764332 1112 6899999999
Q ss_pred CCEEEEEeCCCCcEEEEEeCCCceeeccchhhhHHHHHHHHhcccHHHHHHHHhhcccccceEEecccHHHHHHhHHHHH
Q 000731 677 GAKVIGVLHGDEAAVILQTNRGNLECMYPRKLVLTSIVNALIQGRFRDALVMVRRHRINFNVIVDHCGWQAFLQSASEFV 756 (1325)
Q Consensus 677 Gs~iV~~~p~~~~~vVLQmpRGNLEtI~PR~lvL~~i~~~l~~~~y~~Af~~~R~hRIdlNll~D~~~p~~Fl~~~~~Fv 756 (1325)
||+||+++|++ ++||||||||||||||||+|||+.||.+|++++|++||.+|||||||||+|+||+ |+.|++|++.||
T Consensus 649 GsklVa~~~~k-a~VvLQ~~RGNLEtI~pR~lVLa~vr~~l~~~~y~~AF~~~RkhRidlnii~d~~-~~~Fl~nv~afl 726 (1265)
T KOG1920|consen 649 GSKLVAVVPQK-AAVVLQMPRGNLETIYPRILVLAKVRTLLDRLRYKEAFEVMRKHRIDLNIIFDYD-PKRFLKNVPAFL 726 (1265)
T ss_pred cceEEEeccch-hhHhHhhcCCCceeechhhhHHHHHHHHHHHHHHHHHHHHHHHhccCccchhhcC-HHHHHhhHHHHh
Confidence 99999999999 9999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred hhcCCcchhhHHHhhccCCccccccccccccccCCccccccCCCcccccccCCCchHHHHHHHHHHHhhcCCCCCCchhH
Q 000731 757 RQVNNLSYITEFVCAINNENITETLYKKFQFLSLPCREEFKDLPAKDFKASECNKVSSVLLAIRKALEEKVPESPSRELC 836 (1325)
Q Consensus 757 ~qv~~~~~l~lFls~L~~edvt~t~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~KV~~iC~a~~~~l~~~~~~~~~~~~~ 836 (1325)
+||++++||+|||++|++||||+|||+.+ ..+.. +...+..+..+|||+||+++|.+|++ ..+++|.|+
T Consensus 727 ~~in~~~~l~lfl~~lk~eDvtk~~y~~~--~~s~k-------~~~~~r~~~d~kv~~vc~~vr~~l~~--~~~~~~~~~ 795 (1265)
T KOG1920|consen 727 KQINRVNHLELFLTELKEEDVTKTMYSST--SGSGK-------QVYMSRDPYDNKVNSVCDAVRNALER--RAPDKFNLF 795 (1265)
T ss_pred ccCCcHHHHHHHHhhcccchhhhhhcccc--ccccc-------eeEEeccchhhHHHHHHHHHHHHHhh--cCcchhhHH
Confidence 99999999999999999999999999988 52221 12233445569999999999999998 567799999
Q ss_pred hhhHhhcCCChhHHHHHHHHHHHHhhcccCCCCCCCCChhhHHHHHHHHHhhccHHHHHHHHHhccChhHHHHHHHHhcC
Q 000731 837 ILTTLARSDPPALEEALERIKIIRETELLGSDEPRRMSYPSAEEALKHLLWLADSEAVYEAALGLYDLNLAAIVALNSQR 916 (1325)
Q Consensus 837 ilT~~~~~~pp~le~aL~~i~~l~~~~~~~~~~~~~~~~~~ae~alkyl~~L~d~n~Ly~~ALg~YD~~lal~VAq~sqk 916 (1325)
|||+|||++||++|+||++|+++++.+ ..+++++||+|||||||+|.|||+|||+|||+||++|||+|||
T Consensus 796 ilTs~vk~~~~~ie~aL~kI~~l~~~~----------~~~~ad~al~hll~Lvdvn~lfn~ALgtYDl~Lal~VAq~Sqk 865 (1265)
T KOG1920|consen 796 ILTSYVKSNPPEIEEALQKIKELQLAQ----------VAVSADEALKHLLFLVDVNELFNSALGTYDLDLALLVAQKSQK 865 (1265)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHhcc----------cchhHHHHHHHHHhhccHHHHHHhhhcccchHHHHHHHHHhcc
Confidence 999999999999999999999998621 3679999999999999999999999999999999999999999
Q ss_pred CcccchHhHHHHhcCCchhccccHHHhhcCHHHHHHHHHHcCCCcHHHHHHHHHHHhcChHHHHhhc-CCcHHHHHHHHH
Q 000731 917 DPKEFLPYLQELESMPPLLMRYTIDLRLQRFENALKHIVSMGDSYHADCLNLMKKYAQLFPLGLKLI-TDPAKMEQVLEA 995 (1325)
Q Consensus 917 DPkeYLpfL~~L~~l~~~~~~~~Id~~L~rye~Al~~l~~~g~~~~d~ale~~~~~~~ly~~AL~L~-~d~~~~~~i~~~ 995 (1325)
||||||||||+|++||+++|||+||+|||||++|+.||.+||+.++++|++|+++| +||++||.|| +|+++++.++++
T Consensus 866 DPkEyLP~L~el~~m~~~~rkF~ID~~L~ry~~AL~hLs~~~~~~~~e~~n~I~kh-~Ly~~aL~ly~~~~e~~k~i~~~ 944 (1265)
T KOG1920|consen 866 DPKEYLPFLNELKKMETLLRKFKIDDYLKRYEDALSHLSECGETYFPECKNYIKKH-GLYDEALALYKPDSEKQKVIYEA 944 (1265)
T ss_pred ChHHHHHHHHHHhhchhhhhheeHHHHHHHHHHHHHHHHHcCccccHHHHHHHHhc-ccchhhhheeccCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999988999999999999 9999999999 999999999999
Q ss_pred HHHHHhccccHHHHHHHHHHcCCHHHHHHHHHHcCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000731 996 WADHLSDVKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALD 1075 (1325)
Q Consensus 996 ~a~~L~~~~~~~eAa~~y~~ag~~ekAl~~y~~ag~W~~al~la~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~ 1075 (1325)
||+||++.+.|++|+.+|++||+.+||++||.++|+|++|+++|.++..+++++..+|++|+..|.++|+|.|||++.++
T Consensus 945 ya~hL~~~~~~~~Aal~Ye~~GklekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e 1024 (1265)
T KOG1920|consen 945 YADHLREELMSDEAALMYERCGKLEKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLE 1024 (1265)
T ss_pred HHHHHHHhccccHHHHHHHHhccHHHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHhcCHHHHHHHHHhcCCchhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHhh
Q 000731 1076 YCGDVTNGISLLIDARDWEEALRVAFMHRREDLITK-VKHASLECASSLIGEYKEGLEKVGKYLTRYLAVRQRR-LLLVA 1153 (1325)
Q Consensus 1076 yl~d~e~Av~~~~~~~~w~eA~rLa~~~~~~dL~e~-v~~~l~e~~~~~~e~l~~~~~~~~k~~~Rl~~vR~~k-~~~~~ 1153 (1325)
||+|+++||.+||+|+.|++|+|+|..+++.|++++ ++|+|+|++++.+++|++++++|.+|++||++||++| ++|.+
T Consensus 1025 ~~sd~~~av~ll~ka~~~~eAlrva~~~~~~d~iee~l~~al~e~~~~~~~~L~~~k~~f~~yk~RLl~vRe~k~~~~~~ 1104 (1265)
T KOG1920|consen 1025 YLSDPEEAVALLCKAKEWEEALRVASKAKRDDIIEEVLKPALLEAFGEVLEFLEDVKEQFVKYKKRLLVVRENKEKRPEA 1104 (1265)
T ss_pred HhcCHHHHHHHHhhHhHHHHHHHHHHhcccchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhh
Confidence 999999999999999999999999999999999999 9999999999999999999999999999999999999 78888
Q ss_pred hccccCCCCCCCCCCccccccccccccceeccCCCcccCccccccccccccchhhHHHhhcCCCCCCChhhHHHHHHHhh
Q 000731 1154 KLQSEDRSMNDLDDDTVSETSSTFSGMSVYTTGSSTRKSSAASIKSTAASKARESKRQRNRGKIRPGSPGEEMALVDHLK 1233 (1325)
Q Consensus 1154 ~~~~~~~~~~~~~~D~~S~~ss~~s~~s~yt~~~~~~~~s~~s~~s~~rs~k~rrk~erK~~~~k~Gs~~Ee~~Lv~~l~ 1233 (1325)
|+++|. +.+.++|++|++||..+| |.||++ +. .|++| +||+|||||.||||+||||||||||+|||++|+
T Consensus 1105 -~~~~ev-~~d~d~dlas~ssS~~~~-s~ysG~---sr---~S~~s-~~tsKnrR~~ERKr~s~K~G~~yEd~aLl~~L~ 1174 (1265)
T KOG1920|consen 1105 -FADGEV-EHDLDDDLASESSSTNSG-SQYSGS---SR---SSAIS-ARTSKNRRKLERKRASLKEGGPYEDEALLNALS 1174 (1265)
T ss_pred -hhcccc-Cccccccccccccccccc-ccccCC---CC---ccccc-hhhhhcchhHHHHhhccCCCCchhHHHHHHHHH
Confidence 998887 347788999999888777 788743 22 33355 999999999999999999999999999999999
Q ss_pred c-ccccccchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcchhc----cccCcHHHHHHHHhhc
Q 000731 1234 G-MSLTVGAKQELKSLVVFLVMLGEVDTARKLQDTGETFQLSQMAAIKLAEDTMSIDIIN----EHAHNMERYVQIVKLE 1308 (1325)
Q Consensus 1234 ~-i~~~~~~~~e~~~L~~~L~~~~~~~~A~~lq~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 1308 (1325)
+ +.+++++++|+++|+++|+++||+|+|++||++|++ .+++|+.+++|.+.. ....+-.+++|+...+
T Consensus 1175 ~~~~~le~~r~E~~~Ll~~l~~~g~~eqa~~Lq~~f~e-------v~~~i~~~~~eI~~~~~s~~~~~~gpn~~qk~~~p 1247 (1265)
T KOG1920|consen 1175 EIARRLENIRNELKRLLEVLVTFGMDEQARALQKAFDE-------VLQAIQASLDEIWTVELSLNSHLLGPNDPQKTPRP 1247 (1265)
T ss_pred HHHHHhhcccHHHHHHHHHHHHcCCcHHHHHHHHHHHH-------HHHHHHhhhhhhcChhhhccccccCCcccccCcCC
Confidence 9 999999999999999999999999999999999999 556666666553322 1122233467765667
Q ss_pred cCCcccceeeeecccCC
Q 000731 1309 SQNSEAFSWRSKVFLSP 1325 (1325)
Q Consensus 1309 ~~~~~~~~w~~~~~~~~ 1325 (1325)
+++...++|..++..|+
T Consensus 1248 ~~~~p~~~~~~kl~i~~ 1264 (1265)
T KOG1920|consen 1248 ALDSPLFSPFPKLVIPD 1264 (1265)
T ss_pred CCCCcccccchhhhcCC
Confidence 77889999999988765
No 2
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=100.00 E-value=5.8e-181 Score=1726.37 Aligned_cols=871 Identities=35% Similarity=0.573 Sum_probs=740.6
Q ss_pred CcCceeccccccccccccccc-ceeEEeeecCCCEEEEEeCCCcE---EEEecccccccccce-eeccccccccccCCCC
Q 000731 1 MNNLKLCAEVPLNLELQSKDE-ILQFSALDIEQNRLFFASSANNI---YSAQLSSFQNERASI-KTAISAEIEHIDLEPG 75 (1325)
Q Consensus 1 MrNL~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~l~~~s~~~~i---~~~~~~~~~~~~~~~-~~~l~~~l~~~~~~~~ 75 (1325)
||||++++++.+++....+++ .+.+.+||+++|.+|++.+.+.+ +.++. ..+....+ +.+++.. .+..++
T Consensus 1 MRNL~~~~~~~~~~~~~~~~~~~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~--~~~~~~~~~l~s~~~~---~~~~~~ 75 (928)
T PF04762_consen 1 MRNLRLLRRGEFKLESQSGPDLPITATAFDSDSDSIYFVLGPNEIDYVIELDR--FSQDGSVEVLASWDAP---LPDDPN 75 (928)
T ss_pred CCCcEEeeeeeEeccccCCcccccceEEEecCCCeEEEEECCCCcceEEEEEe--eccCCceeEEEecccc---CCcCCC
Confidence 999999999999877765422 78999999999999999775544 55555 44443222 2222111 113347
Q ss_pred CCEEEEEEccCCCEEEEEECCCcEEEE----eCCCCeEEEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceee
Q 000731 76 DSITAFDYLMEKEALIVGTSSGLLLLH----SVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLY 151 (1325)
Q Consensus 76 ~~V~~v~~spdg~~La~as~dG~I~lw----~~~~~~~e~vg~~~~~I~~~awSPDG~~LA~~s~dgtV~l~s~~~d~~~ 151 (1325)
+.|++++|.+|...||+++++|+|.++ +.++..+|++|.+++||.|++||||+++||++|++++|++|+++||+++
T Consensus 76 ~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~ 155 (928)
T PF04762_consen 76 DKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDFDPIS 155 (928)
T ss_pred CcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEE
Confidence 899999999999999999999999999 7888899999999999999999999999999999999999999999999
Q ss_pred eeeccccC--CCceec------cCcccc------------------------CCCCeEEEEEecCCcEEEEeeccccccC
Q 000731 152 ENPLEELA--EGFDVH------EPELSS------------------------SFSFKSPISWRGDGKYFATLSEFCNSSK 199 (1325)
Q Consensus 152 e~~l~~~~--~~~~Vs------~tqf~~------------------------~~~~i~~isWspDG~~lAtvss~d~~~~ 199 (1325)
|.++++++ .+++|+ |||||| +|++.++|+|||||+||| +++.+++.+
T Consensus 156 E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFA-Vss~~~~~~ 234 (928)
T PF04762_consen 156 EVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFA-VSSVEPETG 234 (928)
T ss_pred EeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEE-EEEEEcCCC
Confidence 99999888 778998 999982 456788999999999999 888866522
Q ss_pred CCCEEEEEECCCCceeeeecCCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeCCCceEEEEEecc-CCCCcEEEE
Q 000731 200 LHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINE-QIDSTVELL 278 (1325)
Q Consensus 200 ~d~~irVWd~~~G~l~~t~e~~~~~v~~lawsPdG~~IAs~~~d~~~~~~~~V~~~e~nGl~~~~f~l~~-~~~~~V~~l 278 (1325)
..|+||||+| +|++++++|+.+|++.+++|+|+|++||++++.++ +.+|+||||||++||+|.++. +.+..|..|
T Consensus 235 ~~R~iRVy~R-eG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~---~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l 310 (928)
T PF04762_consen 235 SRRVIRVYSR-EGELQSTSEPVDGLEGALSWRPSGNLIASSQRLPD---RHDVVFFERNGLRHGEFTLRFDPEEEKVIEL 310 (928)
T ss_pred ceeEEEEECC-CceEEeccccCCCccCCccCCCCCCEEEEEEEcCC---CcEEEEEecCCcEeeeEecCCCCCCceeeEE
Confidence 2799999999 89999999999999999999999999999998654 799999999999999999985 556789999
Q ss_pred EEccCCCeeEEEEccCCCCeEEEEEeeCCeeEEEeEEEEecCCc-EEEEEccCCCcEEEEEecCCcEEEEEEEEeee---
Q 000731 279 KWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDG-IRFMWHPTKPLQLICWTLDGQITTYNFIWTTA--- 354 (1325)
Q Consensus 279 aWSpDg~~LAs~~~d~~~~~VqLW~~~n~~wylkqel~~~~~~~-~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~--- 354 (1325)
+||+||++||++..|. ||||+++||||||||++.|+.... ..+.|||+.+++|++++.+|++..++|.|.++
T Consensus 311 ~Wn~ds~iLAv~~~~~----vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~ 386 (928)
T PF04762_consen 311 AWNSDSEILAVWLEDR----VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSP 386 (928)
T ss_pred EECCCCCEEEEEecCC----ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecC
Confidence 9999999999999886 999999999999999999987655 66999999999999999989999999999998
Q ss_pred ---eCCCeeEEEEeCCEEEEeecCCcCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccccc
Q 000731 355 ---VMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDL 431 (1325)
Q Consensus 355 ---~~d~~~v~viDG~~l~lt~l~~~~vPpPm~~~~l~~~~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~~~~~~~~~~~ 431 (1325)
++|.++|+||||+++++|||+.++||||||.++++++++|++|+|++++ ..+|+.++||+|.+|.++....+...
T Consensus 387 ~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~--~~~avl~~d~~l~~~~~~~~~~~~~~ 464 (928)
T PF04762_consen 387 GSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSN--SRFAVLTSDGSLSIYEWDLKNMWSVK 464 (928)
T ss_pred CCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCC--CeEEEEECCCCEEEEEecCCCccccc
Confidence 4578999999999999999999999999999999999999999999999 77999999999999997654322100
Q ss_pred cC---CceeEe---eeccccccCcEEEEEEecCCeEEEEEecC-CCCceEEEEeecccCccccchhhhhhhhcccccccc
Q 000731 432 EG---TEFVVE---ACISETAFGSVIHLIWLGSHLLLSVSHHG-PRHSNYFRGATLNEDGLLGFYAQEIELACSEDHVQG 504 (1325)
Q Consensus 432 ~g---~~~~~~---~~~~~~~~~~v~~l~~~~d~~lla~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (1325)
.. ..+... ..........+++++|..++.++++...+ ..+.+.++.+.-
T Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~------------------------ 520 (928)
T PF04762_consen 465 PPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDD------------------------ 520 (928)
T ss_pred CcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEecCcccceEEEEEecc------------------------
Confidence 00 001000 00012234579999999999988877665 334555554411
Q ss_pred cccccccceeeeeecccCCcEEEEeeCCCCCceEEEEeeCCeEEEEeccccccCCCCCCCCCCCCCCCCceeEEEecCCC
Q 000731 505 LLTCAGWHAKVSTQIPLEGLVIAIAPNNAKKYSAFLQFHGGKISEYMSRVGLTGGALTHDDASFPSSCPWMNVVSVGTNG 584 (1325)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~q~~dG~v~~~~~~~~~~~~~~~~~~~~fp~~c~~~~~~~~~~~~ 584 (1325)
......+......++.+..+..++ ....+++|+.+|+|+.+...... ....+||++|+|++++.++ +
T Consensus 521 ----~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~q~~~G~v~~~~~~~~~------~~~~~fp~~c~~~~~~~~~--~ 587 (928)
T PF04762_consen 521 ----SENSASVESSTEVDGVVLIISSSP-DSGSLYIQTNDGKVFQLSSDGEL------SQIVKFPQPCPWMEVCQIN--G 587 (928)
T ss_pred ----CCCceeEEEEeccCceEEEEeeCC-CCcEEEEEECCCEEEEeecCCCc------cccccCCCCCcEEEEEEEC--C
Confidence 111334445566677777776655 44469999999999988654311 2237999999999999987 4
Q ss_pred C-CcceEEEEcCCCceeeCCEeeecCceeEEEeccCccccceEEEEEecCCeEEEEEcCccccccccccccccccccCcc
Q 000731 585 P-LKPLLFGLDDGGRLHVSGKIVCNNCSSFSFYSKSAGQAMSHLILATKQNLLFIVDISDILHGELALKYENFTHVGNRR 663 (1325)
Q Consensus 585 ~-~~~~~~gL~~~~~L~~~~~~~~~~~tSf~~~~~~~~~~~~~Ll~TT~~h~l~~v~l~~~~~~~~~~~~~~~~~~~~~~ 663 (1325)
. .+.++|||+++|+||+|+++||+|||||+++++ ||||||.+|+|+||||+ ....+++++.+. ..
T Consensus 588 ~~~~~~~~GLs~~~~Ly~n~~~la~~~tSF~v~~~-------~Ll~TT~~h~l~fv~L~-~~~~~l~~~~~~----~~-- 653 (928)
T PF04762_consen 588 SEDKRVLFGLSSNGRLYANSRLLASNCTSFAVTDS-------FLLFTTTQHTLKFVHLN-SSVEDLEIPPDS----PE-- 653 (928)
T ss_pred ccceeEEEEECCCCEEEECCEEEecCCceEEEEcC-------EEEEEecCceEEEEECc-CchhhcccccCc----cc--
Confidence 1 023899999999999999999999999999999 99999999999999998 233444543322 11
Q ss_pred ccccccccccccCCCEEEEEeCCCCcEEEEEeCCCceeeccchhhhHHHHHHHHhcccHHHHHHHHhhcccccceEEecc
Q 000731 664 KEENISYINIWERGAKVIGVLHGDEAAVILQTNRGNLECMYPRKLVLTSIVNALIQGRFRDALVMVRRHRINFNVIVDHC 743 (1325)
Q Consensus 664 ~~~~de~~R~vErGs~iV~~~p~~~~~vVLQmpRGNLEtI~PR~lvL~~i~~~l~~~~y~~Af~~~R~hRIdlNll~D~~ 743 (1325)
..+||++|+||||||||+|+|++ ++||||||||||||||||+|||+.||++|++++|++||.+|||||||||||||||
T Consensus 654 -~~~de~~R~VERGsriVt~vp~~-~~vVLQmPRGNLEtI~PR~LVL~~ir~~Ld~~~Y~~Af~~~RkhRIdlNll~Dh~ 731 (928)
T PF04762_consen 654 -NSYDERCRRVERGSRIVTAVPSD-TSVVLQMPRGNLETIYPRALVLAGIRKLLDAKDYKEAFELCRKHRIDLNLLYDHN 731 (928)
T ss_pred -cccccccccCccCCEEEEEeCCC-ceEEEEcCCCchhhhccHhHHHHHHHHHHhhccHHHHHHHHHHhccccceEEECC
Confidence 11589999999999999999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHhHHHHHhhcCCcchhhHHHhhccCCccccccccccccccCCccccccCCCcccccccCCCchHHHHHHHHHHH
Q 000731 744 GWQAFLQSASEFVRQVNNLSYITEFVCAINNENITETLYKKFQFLSLPCREEFKDLPAKDFKASECNKVSSVLLAIRKAL 823 (1325)
Q Consensus 744 ~p~~Fl~~~~~Fv~qv~~~~~l~lFls~L~~edvt~t~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~KV~~iC~a~~~~l 823 (1325)
|++||+||+.||+||++++|||||||+|+|||||+|||+++ +. ...... ..........++|||+||+|||++|
T Consensus 732 -p~~Fl~ni~~Fv~qi~~~~~lnLFls~L~~EDvt~tmY~~~--~~--~~~~~~-~~~~~~~~~~~~KVn~ICdair~~l 805 (928)
T PF04762_consen 732 -PEQFLENIELFVEQIKDVDYLNLFLSSLRNEDVTKTMYKDT--YP--PSSEAQ-PNSNSSTASSESKVNKICDAIRKAL 805 (928)
T ss_pred -HHHHHHHHHHHHHhcCCHHHHHHHHHhcccccccccccccc--cc--cccccc-cccccCCCccccHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999 61 111000 0111122236799999999999999
Q ss_pred hhcCCCCCCchhHhhhHhhcCCChhHHHHHHHHHHHHhhcccCCCCCCCCChhhHHHHHHHHHhhccHHHHHHHHHhccC
Q 000731 824 EEKVPESPSRELCILTTLARSDPPALEEALERIKIIRETELLGSDEPRRMSYPSAEEALKHLLWLADSEAVYEAALGLYD 903 (1325)
Q Consensus 824 ~~~~~~~~~~~~~ilT~~~~~~pp~le~aL~~i~~l~~~~~~~~~~~~~~~~~~ae~alkyl~~L~d~n~Ly~~ALg~YD 903 (1325)
++. .++.+|+||||||||||+||+||+||++|++||++ +++.||+||||||||+|+|+||++||||||
T Consensus 806 ~~~-~~~~~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~-----------~~~~ae~alkyl~fLvDvn~Ly~~ALG~YD 873 (928)
T PF04762_consen 806 EKP-KDKDKYLQPILTAYVKKSPPDLEEALQLIKELREE-----------DPESAEEALKYLCFLVDVNKLYDVALGTYD 873 (928)
T ss_pred ccc-ccchhhHHHHHHHHHhcCchhHHHHHHHHHHHHhc-----------ChHHHHHHHhHheeeccHHHHHHHHhhhcC
Confidence 943 78999999999999999999999999999999976 688999999999999999999999999999
Q ss_pred hhHHHHHHHHhcCCcccchHhHHHHhcCCchhccccHHHhhcCHHHHHHHHHHcC
Q 000731 904 LNLAAIVALNSQRDPKEFLPYLQELESMPPLLMRYTIDLRLQRFENALKHIVSMG 958 (1325)
Q Consensus 904 ~~lal~VAq~sqkDPkeYLpfL~~L~~l~~~~~~~~Id~~L~rye~Al~~l~~~g 958 (1325)
|+||+||||||||||||||||||+|++||+++|||+||+|||||++||+||++||
T Consensus 874 l~Lal~VAq~SQkDPKEYLPfL~~L~~l~~~~rry~ID~hLkRy~kAL~~L~~~G 928 (928)
T PF04762_consen 874 LELALMVAQQSQKDPKEYLPFLQELQKLPPLYRRYKIDDHLKRYEKALRHLSACG 928 (928)
T ss_pred HHHHHHHHHHhccChHHHHHHHHHHHhCChhheeeeHhhhhCCHHHHHHHHHhhC
Confidence 9999999999999999999999999999999999999999999999999999997
No 3
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=100.00 E-value=4e-174 Score=1500.44 Aligned_cols=1150 Identities=23% Similarity=0.273 Sum_probs=946.8
Q ss_pred CcCceecccccccccccccccceeEEeeecCCCEEEEE----eCCCcEEEEecccccccccceeeccccccccccCCC-C
Q 000731 1 MNNLKLCAEVPLNLELQSKDEILQFSALDIEQNRLFFA----SSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEP-G 75 (1325)
Q Consensus 1 MrNL~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~----s~~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~ 75 (1325)
||||..+....++ ... | ..-.++||..+|.||+. |.|.+|+....+ .....+ +++.+.+.. .
T Consensus 1 M~Nl~t~~~~~fp-t~s--g-~~~~l~fdsv~D~iyi~c~l~s~d~Giev~~~s---~~~d~s------~l~~F~ip~f~ 67 (1243)
T COG5290 1 MENLFTRYMSTFP-TAS--G-DEDELGFDSVGDWIYITCVLGSTDKGIEVAKES---SIYDES------GLKRFEIPFFP 67 (1243)
T ss_pred CcchHhhhhccCC-CCC--C-ChHHhcccccCceEEEEeecCCCCCCeeeeeec---cccchh------heeEeccCCcc
Confidence 9999999998884 333 4 55678889999999965 445666655542 211111 133333221 3
Q ss_pred CCEEEEEEccCCCEEEEEECCCcEEEEeCC-C---CeEEEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceee
Q 000731 76 DSITAFDYLMEKEALIVGTSSGLLLLHSVD-G---NATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLY 151 (1325)
Q Consensus 76 ~~V~~v~~spdg~~La~as~dG~I~lw~~~-~---~~~e~vg~~~~~I~~~awSPDG~~LA~~s~dgtV~l~s~~~d~~~ 151 (1325)
+.+.++.|+.+-..++..-..|+|+..-.+ + ..++++|.+++||.+++||.|.++++.++++.+|.+|++.||+++
T Consensus 68 dkl~s~~hf~~~~~~~f~~~~gDii~~~~dp~p~e~~~eivG~v~nGIvaa~wS~DE~~~cvvt~~r~il~~~k~fd~is 147 (1243)
T COG5290 68 DKLLSFKHFHVLTFEYFLIDEGDIIHLVNDPTPAELEMEIVGKVSNGIVAASWSADEKTWCVVTSTREILLFDKYFDPIS 147 (1243)
T ss_pred hHhhhhhhhhhhheeeEEecCCcEEEEEcCCCcccchhhhhccccCceEEEeeccCCceEEEEEcCceEEEEeccccccc
Confidence 789999999999999999999998764322 2 356799999999999999999999999999999999999999999
Q ss_pred eeeccccC---CCceec------cCcccc-----------------------CCCCeEEEEEecCCcEEEEeeccccccC
Q 000731 152 ENPLEELA---EGFDVH------EPELSS-----------------------SFSFKSPISWRGDGKYFATLSEFCNSSK 199 (1325)
Q Consensus 152 e~~l~~~~---~~~~Vs------~tqf~~-----------------------~~~~i~~isWspDG~~lAtvss~d~~~~ 199 (1325)
+..+...+ -+++|+ +|||+| -++....|+||||.+|++ ++.... .
T Consensus 148 e~~L~~~dl~ef~khi~VgWgkketqfrgk~~raqlrdptmp~~vD~G~l~avd~~k~~i~wrgD~~y~~-v~r~Ee--~ 224 (1243)
T COG5290 148 EYHLKKSDLVEFGKHIRVGWGKKETQFRGKGARAQLRDPTMPYMVDYGDLFAVDTNKKIIFWRGDTEYNL-VGRSEE--R 224 (1243)
T ss_pred hhhcchhHHHHhccceEeeecccchhccccchhhhccCCCCcccccccceeEeeCCceEEEEccCcceee-ecchhc--c
Confidence 99998776 567876 999993 234567899999999999 887653 4
Q ss_pred CCCEEEEEECCCCceeeeecCCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeCCCceEEEEEeccCCCCcEEEEE
Q 000731 200 LHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLK 279 (1325)
Q Consensus 200 ~d~~irVWd~~~G~l~~t~e~~~~~v~~lawsPdG~~IAs~~~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~la 279 (1325)
.+|.+|||.| +|++.+.+||.+|..+.++|.|+|..+|+.+.|. ......|+|||+||++||+|.++.+-+..+..++
T Consensus 225 prra~rvysr-eg~lds~sep~~g~e~~LSWkpqgS~~ati~td~-~~~S~~ViFfErNGLrHGef~lr~~~dEk~~~~~ 302 (1243)
T COG5290 225 PRRAFRVYSR-EGQLDSASEPVTGMEHQLSWKPQGSKYATIGTDG-CSTSESVIFFERNGLRHGEFDLRVGCDEKAFLEN 302 (1243)
T ss_pred cccceeeecc-ccccccccCCcccchhccccccCCceeeeeccCC-CCCcceEEEEccCCcccCCccccCCchhhhhhhh
Confidence 5789999999 9999999999999999999999999999998653 2335779999999999999998866667889999
Q ss_pred EccCCCeeEEEEccCCCCeEEEEEeeCCeeEEEeEEEEecCCcEEEEEccCCCcEEEEEecCCcEEEEEEEEeee-----
Q 000731 280 WNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTA----- 354 (1325)
Q Consensus 280 WSpDg~~LAs~~~d~~~~~VqLW~~~n~~wylkqel~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~----- 354 (1325)
|+..+++||++..+. |+||+++|||||||+++..+ +...+.|||+...+|.+.. .+.+....|.....
T Consensus 303 wn~~s~vlav~~~n~----~~lwttkNyhWYLK~e~~ip--~~s~vkwhpe~~nTl~f~d-~~~I~~V~f~~k~~~~~s~ 375 (1243)
T COG5290 303 WNLLSTVLAVAEGNL----LKLWTTKNYHWYLKVERQIP--GISYVKWHPEEKNTLLFRD-GERILRVFFSEKKTHHGSE 375 (1243)
T ss_pred hhHHHHHHHHhhcce----EEEEEccceEEEEEEeecCC--CcceeeeccccCcEEEEec-CCeEEEEEeehhhhcCCcc
Confidence 999999999998775 99999999999999999764 2367899999999887754 35555554443322
Q ss_pred -eCCCeeEEEEeCCEEEEeecCCcCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccccccC
Q 000731 355 -VMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEG 433 (1325)
Q Consensus 355 -~~d~~~v~viDG~~l~lt~l~~~~vPpPm~~~~l~~~~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~~~~~~~~~~~~g 433 (1325)
|.|.|+..||||+.+++|||..+++|||||.+.++++.+|.+|+-|... .++|++..| .+..+.++..+-+...
T Consensus 376 ~p~d~g~~~ViDGs~~l~Tplsl~n~PPPm~~~~~~~d~NV~dv~~s~~~--~~~aa~~~d-rli~f~~~s~e~i~k~-- 450 (1243)
T COG5290 376 YPFDNGTSYVIDGSYMLYTPLSLKNLPPPMFSVRVGFDTNVVDVFPSFAE--KKGAALLRD-RLIMFRWDSEEFINKR-- 450 (1243)
T ss_pred cCccCCceEEEcCceEEecchhhhcCCCCeEEEEecCCCceeeeccchhh--hhHhhhccc-eeEEEecCcHHHHHHh--
Confidence 8899999999999999999999999999999999999999999876666 678887666 4555666543222110
Q ss_pred CceeEeeeccccccC---cEEEEEEecCCeEEEEEecCCCCceEEEEeecccCccccchhhhhhhhcccccccccccccc
Q 000731 434 TEFVVEACISETAFG---SVIHLIWLGSHLLLSVSHHGPRHSNYFRGATLNEDGLLGFYAQEIELACSEDHVQGLLTCAG 510 (1325)
Q Consensus 434 ~~~~~~~~~~~~~~~---~v~~l~~~~d~~lla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (1325)
.+| +....+ -+.++++..+|..+...- .++-..++.+.. | | ...|
T Consensus 451 ~ef------~~sef~s~v~f~~~l~l~~~~v~ll~d--tnn~s~~~i~~~-~---------d-------~~e~------- 498 (1243)
T COG5290 451 TEF------LESEFDSIVLFDGFLVLKSGHVFLLKD--TNNESDTYITRN-G---------D-------VDER------- 498 (1243)
T ss_pred ccc------cHHhhhhhccccceEEecCceEEEEec--cCCCcceEEeec-C---------c-------ccch-------
Confidence 011 111111 356777777776544332 222222222211 1 1 1100
Q ss_pred cceeeeeecccCCcEEEEeeCCCCCceEEEEeeCCeEEEEeccccccCCCCCCCCCCCCCCCCceeEEEecCCCCCcceE
Q 000731 511 WHAKVSTQIPLEGLVIAIAPNNAKKYSAFLQFHGGKISEYMSRVGLTGGALTHDDASFPSSCPWMNVVSVGTNGPLKPLL 590 (1325)
Q Consensus 511 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~q~~dG~v~~~~~~~~~~~~~~~~~~~~fp~~c~~~~~~~~~~~~~~~~~~ 590 (1325)
..... ++....++. ..+. ....+++++.+|+|..|+....+ -..++||++|..+.+.++. . ..+.
T Consensus 499 ~k~~~---ve~~~~~~l-~~~~-c~~~l~y~t~~G~v~~yn~e~kl------~e~~kfp~~v~df~v~pVH--~--t~v~ 563 (1243)
T COG5290 499 KKRGT---VETRRTSTL-VHQL-CQTLLRYGTCVGVVKHYNFEEKL------YELLKFPNGVIDFSVDPVH--S--TLVA 563 (1243)
T ss_pred hhccc---eeeeeeehh-hHHH-HHHHHhhcccceeEEEecchhhh------HHHhhCCCceeEEEeeccc--c--ceee
Confidence 00000 111111111 1111 45677899999999999764322 1246899999999998876 3 4578
Q ss_pred EEEcCCCceeeCCEeeecCceeEEEeccCccccceEEEEEecCCeEEEEEcCccccccccccccccccccCccccccccc
Q 000731 591 FGLDDGGRLHVSGKIVCNNCSSFSFYSKSAGQAMSHLILATKQNLLFIVDISDILHGELALKYENFTHVGNRRKEENISY 670 (1325)
Q Consensus 591 ~gL~~~~~L~~~~~~~~~~~tSf~~~~~~~~~~~~~Ll~TT~~h~l~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~de~ 670 (1325)
||+++.|+||++..++++.|+||..|+. |++|||++|.|.||||... ++++..-.++.+ .-.||+
T Consensus 564 igit~~g~lfa~qvll~~~V~s~~~T~~-------FvlftTt~n~l~Fvhl~st-~~~l~~Veeg~v-------~~~dEr 628 (1243)
T COG5290 564 IGITDIGQLFALQVLLKKSVFSHNGTKL-------FVLFTTTENILSFVHLEST-FKPLITVEEGTV-------RFFDER 628 (1243)
T ss_pred eecccHHHHHHHHHHHHhhhheeeccee-------EEeecchhhhhheEEeecc-cccceeecccch-------hhhhhh
Confidence 9999999999999999999999999999 9999999999999999864 777765333211 125899
Q ss_pred cccccCCCEEEEEeCCCCcEEEEEeCCCceeeccchhhhHHHHHHHHhcccHHHHHHHHhhcccccceEEecccHHHHHH
Q 000731 671 INIWERGAKVIGVLHGDEAAVILQTNRGNLECMYPRKLVLTSIVNALIQGRFRDALVMVRRHRINFNVIVDHCGWQAFLQ 750 (1325)
Q Consensus 671 ~R~vErGs~iV~~~p~~~~~vVLQmpRGNLEtI~PR~lvL~~i~~~l~~~~y~~Af~~~R~hRIdlNll~D~~~p~~Fl~ 750 (1325)
+|.|||||++|.++|+. +.||||||||||||||||+|||+.||++|.+++|++||..||+|||||||++||+ |+.|++
T Consensus 629 ~r~vergs~~v~~lpsk-~~vVlq~tRGnLETiyPrImvLa~Vrk~i~akkYkdAf~vCrthrv~l~Il~Dyd-pelfie 706 (1243)
T COG5290 629 KRSVERGSHKVELLPSK-DFVVLQVTRGNLETIYPRIMVLAFVRKLIAAKKYKDAFDVCRTHRVPLGILLDYD-PELFIE 706 (1243)
T ss_pred HHHhhhcceeeEeeccc-ceEEEecccCcceeecceeeeHHHHHHHHHHhhhhHHHHHHHheeeccceeecCC-hHHHHh
Confidence 99999999999999999 9999999999999999999999999999999999999999999999999999999 999999
Q ss_pred hHHHHHhhcCCcchhhHHHhhccCCccccccccccccccCCccccccCCCcccccccCCCchHHHHHHHHHHHhhcCCCC
Q 000731 751 SASEFVRQVNNLSYITEFVCAINNENITETLYKKFQFLSLPCREEFKDLPAKDFKASECNKVSSVLLAIRKALEEKVPES 830 (1325)
Q Consensus 751 ~~~~Fv~qv~~~~~l~lFls~L~~edvt~t~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~KV~~iC~a~~~~l~~~~~~~ 830 (1325)
|++.||.|+.++|||+||+++|+++|||+|||... .++ . +.....+...+|||.+|+++|+.|++. .+.
T Consensus 707 nlevFv~~~~rvdyl~lF~~~L~~ddvt~~~ys~i--skS-~-------q~~~~~k~fD~kvnl~ck~~rehl~s~-~y~ 775 (1243)
T COG5290 707 NLEVFVTECRRVDYLSLFSEALQRDDVTKTDYSFI--SKS-E-------QARRFRKVFDLKVNLECKDTREHLESL-IYN 775 (1243)
T ss_pred hHHHHHHhhhhhhHHHHHHHhcChhhccccchhhh--hHH-H-------HHHHHHHHhcchhhhccHHHHHHHHhh-hcc
Confidence 99999999999999999999999999999999876 321 0 111112224589999999999999986 789
Q ss_pred CCchhHhhhHhhcCCChhHHHHHHHHHHHHhhcccCCCCCCCCChhhHHHHHHHHHhhccHHHHHHHHHhccChhHHHHH
Q 000731 831 PSRELCILTTLARSDPPALEEALERIKIIRETELLGSDEPRRMSYPSAEEALKHLLWLADSEAVYEAALGLYDLNLAAIV 910 (1325)
Q Consensus 831 ~~~~~~ilT~~~~~~pp~le~aL~~i~~l~~~~~~~~~~~~~~~~~~ae~alkyl~~L~d~n~Ly~~ALg~YD~~lal~V 910 (1325)
++|+|+|+|||++.+||++++||.+|+.|-. ..++.+++++|||||+|+|-+|+.||++||+.||++|
T Consensus 776 d~~~qtiitayl~~np~n~~aal~~is~l~r------------~se~~d~~v~~lCfl~dvn~~~~~aLsLyd~slalli 843 (1243)
T COG5290 776 DESIQTIITAYLIGNPGNGKAALMRISPLSR------------CSESLDEDVKNLCFLRDVNFFNEFALSLYDKSLALLI 843 (1243)
T ss_pred chhHHHHHHHHHhcCCcchHHHHhhhhhhhh------------ccccchHHHHhHhhhhhHHHHHHHHhHHHHHHHHHHH
Confidence 9999999999999999999999999998842 3567889999999999999999999999999999999
Q ss_pred HHHhcCCcccchHhHHHHhcCCchhccccHHHhhcCHHHHHHHHHHcCCCcHHHHHHHHHHHhcChHHHHhhc-CCcHHH
Q 000731 911 ALNSQRDPKEFLPYLQELESMPPLLMRYTIDLRLQRFENALKHIVSMGDSYHADCLNLMKKYAQLFPLGLKLI-TDPAKM 989 (1325)
Q Consensus 911 Aq~sqkDPkeYLpfL~~L~~l~~~~~~~~Id~~L~rye~Al~~l~~~g~~~~d~ale~~~~~~~ly~~AL~L~-~d~~~~ 989 (1325)
||+|||||+||||||++++++++.+++|.||+||++|++||.|+.+.. .-++|.++|+..| .+|+.+|.|| +|.+..
T Consensus 844 aq~sqkdpReylpfl~e~qd~e~lrrkf~Id~yl~~ye~ALghl~E~~-n~~~Ev~~yi~~h-dly~~~l~lyrYd~e~Q 921 (1243)
T COG5290 844 AQLSQKDPREYLPFLVERQDLEALRRKFSIDNYLSIYESALGHLNEDL-NVIREVMKYICRH-DLYDFLLLLYRYDGELQ 921 (1243)
T ss_pred HHHhccCchhhhhHHHHhhhhHHHHhHhchhhhHHHHHHHHHhhHhHH-HHHHHHHHHHHhc-cchHHHHHHHHhhhhhh
Confidence 999999999999999999999999999999999999999999999874 3479999999999 9999999999 999999
Q ss_pred HHHHHHHHHHHhccccHHHHHHHHHHcCCHHHHHHHHHHcCCHHHHHHHHhhcCCCHHHHHHHHHHHHHH-HHHcCChHH
Q 000731 990 EQVLEAWADHLSDVKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEE-LQALGKPGE 1068 (1325)
Q Consensus 990 ~~i~~~~a~~L~~~~~~~eAa~~y~~ag~~ekAl~~y~~ag~W~~al~la~~l~~~~~~~~~l~~~la~~-L~~~~~~~e 1068 (1325)
+.++..||.||.+.+.|.+|+.+|+..|++.+|+.+|..|+.|++|++|+.+-. ..+++..|+.|+.. +.+.++|.+
T Consensus 922 k~~~nifa~~l~~n~~~~~aa~aye~~gK~~Ea~gay~sA~mwrec~si~~q~~--~~e~~~~AE~L~S~l~ve~R~~~d 999 (1243)
T COG5290 922 KFKINIFAGNLVDNLYHISAAKAYEVEGKYIEAHGAYDSALMWRECGSISTQEK--GYEFNLCAELLPSDLLVEFRKAGD 999 (1243)
T ss_pred hhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhc--chHHHHHHHhhhhhHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999998743 45677788888874 456777999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhcCHHHHHHHHHhcCCchhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000731 1069 AAKIALDYCGDVTNGISLLIDARDWEEALRVAFMHRREDLITK-VKHASLECASSLIGEYKEGLEKVGKYLTRYLAVRQR 1147 (1325)
Q Consensus 1069 Aa~i~~~yl~d~e~Av~~~~~~~~w~eA~rLa~~~~~~dL~e~-v~~~l~e~~~~~~e~l~~~~~~~~k~~~Rl~~vR~~ 1147 (1325)
|+.+.+.|+.++.+|+.|+|+|.+|.+|+++|......++.+. +.|.|.|.++...|.+++++.|++.|..||+++|.+
T Consensus 1000 a~~i~l~yl~N~~eava~~ckgs~y~ea~~~a~~s~~~e~~k~~~~~~LgE~Fg~~~El~ad~~~qikSq~~rlrvlr~k 1079 (1243)
T COG5290 1000 AEKILLTYLENLYEAVAMDCKGSEYREAFCEAMVSRLVESEKHYEAGQLGEEFGGKPELAADEYVQIKSQGDRLRVLRDK 1079 (1243)
T ss_pred HHHHHHHHHhCHHHHHHHHcccccchHHHHHHHHhhhhhHHHHhhhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999998877788888 999999999999999999999999999999999999
Q ss_pred H-HhHhhhccccCCCCCCCCCCccccccc----cccccceeccCCCcccCccccccccccccchhhHHHhhcCCCCCCCh
Q 000731 1148 R-LLLVAKLQSEDRSMNDLDDDTVSETSS----TFSGMSVYTTGSSTRKSSAASIKSTAASKARESKRQRNRGKIRPGSP 1222 (1325)
Q Consensus 1148 k-~~~~~~~~~~~~~~~~~~~D~~S~~ss----~~s~~s~yt~~~~~~~~s~~s~~s~~rs~k~rrk~erK~~~~k~Gs~ 1222 (1325)
| ++|.+ ++.+-. .+...||+ |++++ ..|.+++||. +.++++ +| ++++||.||.||||++||||++
T Consensus 1080 k~e~p~a-~~~~~~-e~~t~dDv-s~a~~~~st~~s~~t~ytk----~~~~sk--~s-r~ttkN~rr~erkRargkkGt~ 1149 (1243)
T COG5290 1080 KCEMPEA-REILRE-ELLTLDDV-SEAFVKYSTRLSALTEYTK----DECMSK--TS-RSTTKNMRRGERKRARGKKGTR 1149 (1243)
T ss_pred hhcChHH-HHhhhh-hhcCccch-hhhhhhhhhHHHHHHHHhc----ccccch--hh-hhhhhhcccchhhhhcCCCCce
Confidence 9 99999 554211 13334454 55544 4444667772 222222 45 8999999999999999999999
Q ss_pred hhHHHHHHHhhc-ccccccchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCc
Q 000731 1223 GEEMALVDHLKG-MSLTVGAKQELKSLVVFLVMLGEVDTARKLQDTGETFQLSQMAAIKLAEDTMSI 1288 (1325)
Q Consensus 1223 ~Ee~~Lv~~l~~-i~~~~~~~~e~~~L~~~L~~~~~~~~A~~lq~~~~~~~~~~~~~~~~~~~~~~~ 1288 (1325)
|||||||++|++ |.|+.++++|+.+|+++|++|||.|||+++|++|.+ .+.+|+..+-+
T Consensus 1150 yEeEylv~sirrli~rl~~~rpe~~rlve~l~r~nM~eqa~~~q~nF~e-------V~~~ik~~V~~ 1209 (1243)
T COG5290 1150 YEEEYLVSSIRRLILRLVGWRPETERLVEILKRFNMEEQARAHQTNFDE-------VGRAIKTEVDS 1209 (1243)
T ss_pred ehHHHHHHHHHHHHHHHhccChhHHHHHHHHHHcChHHHHHHHhhhHHH-------HHHHHhhccce
Confidence 999999999999 999999999999999999999999999999999999 66666665544
No 4
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.5e-32 Score=318.35 Aligned_cols=823 Identities=16% Similarity=0.201 Sum_probs=478.3
Q ss_pred cccccccccceeEEeeecCCCEEEEEeCCCcEEEEeccccccccc----ceeecccc--ccccccCCCCCCEEEEEEccC
Q 000731 13 NLELQSKDEILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERA----SIKTAISA--EIEHIDLEPGDSITAFDYLME 86 (1325)
Q Consensus 13 ~~~~~~~~~~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~----~~~~~l~~--~l~~~~~~~~~~V~~v~~spd 86 (1325)
++.++.+. ...+.+|+.+++-|.++..|+.+...-+...+-+.. ...+.|.. -|.+| .+.|..+.|.-.
T Consensus 8 ki~iPnnv-kL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH----~~sV~vvTWNe~ 82 (1189)
T KOG2041|consen 8 KIGIPNNV-KLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGH----NASVMVVTWNEN 82 (1189)
T ss_pred ccCCCCCc-eEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccC----cceEEEEEeccc
Confidence 33455555 889999999999999999999665554421111110 01111111 13444 468999999999
Q ss_pred CCEEEEEECCCcEEEEeCCCCeE-E--EeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeeeccccC----
Q 000731 87 KEALIVGTSSGLLLLHSVDGNAT-E--VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELA---- 159 (1325)
Q Consensus 87 g~~La~as~dG~I~lw~~~~~~~-e--~vg~~~~~I~~~awSPDG~~LA~~s~dgtV~l~s~~~d~~~e~~l~~~~---- 159 (1325)
.+.|-+.-.+|-|++|-+-.+.+ | +-..-.+-|.+|+|+-||+.++++-.||.|++=+-+++-+-+..+....
T Consensus 83 ~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv 162 (1189)
T KOG2041|consen 83 NQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHV 162 (1189)
T ss_pred cccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchheccce
Confidence 99999999999999998865443 2 2223345689999999999999999999998865554444333222111
Q ss_pred --------------CCc-ee-----------------c-cCccccCCCCeEEEEEe--------cCCcEEEEeecccccc
Q 000731 160 --------------EGF-DV-----------------H-EPELSSSFSFKSPISWR--------GDGKYFATLSEFCNSS 198 (1325)
Q Consensus 160 --------------~~~-~V-----------------s-~tqf~~~~~~i~~isWs--------pDG~~lAtvss~d~~~ 198 (1325)
+++ ++ + ...|......+..+.|. ||.-.|| +...
T Consensus 163 ~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~la-vcy~---- 237 (1189)
T KOG2041|consen 163 LWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLA-VCYA---- 237 (1189)
T ss_pred eecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEE-EEEc----
Confidence 000 01 0 01111233456778884 5777888 6643
Q ss_pred CCCCEEEEEECCC-CceeeeecCCCCceeEEEEccCCCeEEEEecCCC---CCCCCeEEEEeCCCceEEEEEeccCCCCc
Q 000731 199 KLHKRLKVWERDS-GTLQASSELKAFMGAVLEWMPSGANIAAVYDRKS---ENKCPSIVFYERNGLERSSFDINEQIDST 274 (1325)
Q Consensus 199 ~~d~~irVWd~~~-G~l~~t~e~~~~~v~~lawsPdG~~IAs~~~d~~---~~~~~~V~~~e~nGl~~~~f~l~~~~~~~ 274 (1325)
+|.++|-..++ .+..-... .-.+...-|+|+|..+|.++.+.. +...+.|.|+..-|...|.|..+ ...
T Consensus 238 --nGr~QiMR~eND~~Pvv~dt--gm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~G~i~gtlkvp---g~~ 310 (1189)
T KOG2041|consen 238 --NGRMQIMRSENDPEPVVVDT--GMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPYGHIVGTLKVP---GSC 310 (1189)
T ss_pred --CceehhhhhcCCCCCeEEec--ccEeecceecCCCcEEEEccCcccccCccccceEEEeccchhheEEEecC---Cce
Confidence 35555543321 12211111 133567899999999999987643 22345799999999888876665 346
Q ss_pred EEEEEEccCCCeeEEEEccCCCCeEEEEEee-CCee-EEEeEEEEecCCcEEEEEccCCCc-EEEEEecCCcEEEEEEEE
Q 000731 275 VELLKWNCMSDLLAAVVRFEEYDSVKICFFS-NNHW-YLKYEIRYLRRDGIRFMWHPTKPL-QLICWTLDGQITTYNFIW 351 (1325)
Q Consensus 275 V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~-n~~w-ylkqel~~~~~~~~~v~Wsp~~~~-~L~~~~~~g~~~~~~~~~ 351 (1325)
|.+|+|-..|-.+|.+... .|.+=+.. +|.| |...++.|-- =-++.|. .++ .|
T Consensus 311 It~lsWEg~gLriA~Avds----fiyfanIRP~ykWgy~e~TvVy~y-------~~~e~p~y~i~-------------Fw 366 (1189)
T KOG2041|consen 311 ITGLSWEGTGLRIAIAVDS----FIYFANIRPEYKWGYIEETVVYVY-------QKEELPQYGIM-------------FW 366 (1189)
T ss_pred eeeeEEcCCceEEEEEecc----eEEEEeecccceEEEeeeEEEEEE-------ccCCCcceEEE-------------EE
Confidence 9999999999999988654 46665544 7888 4444444311 0122221 111 12
Q ss_pred eeeeCCCeeEEEEeCCEEEEeecCCcCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccccc
Q 000731 352 TTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDL 431 (1325)
Q Consensus 352 ~~~~~d~~~v~viDG~~l~lt~l~~~~vPpPm~~~~l~~~~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~~~~~~~~~~~ 431 (1325)
++.. +.+.++ +++ ...+++|+.+. -.|+.-..||.+.=++. ++..
T Consensus 367 dtk~---------nek~vK----------------~V~---~~~~~a~~~eh--CvL~~~~d~~~i~e~s~-----le~~ 411 (1189)
T KOG2041|consen 367 DTKT---------NEKTVK----------------TVT---HFENMAFYREH--CVLINRQDDGVIPEYST-----LENR 411 (1189)
T ss_pred eccc---------Chhhhh----------------hhc---ceeehheeccc--EEEEeccccCCCcchhh-----hhcc
Confidence 2110 001110 000 11233333333 33333333333322210 0000
Q ss_pred cCCceeEeeecc-----ccccCcEEE-EEEecCCeEEEEEecCCCCceEEEEeecccCc--c-ccchhhhhhhhcccccc
Q 000731 432 EGTEFVVEACIS-----ETAFGSVIH-LIWLGSHLLLSVSHHGPRHSNYFRGATLNEDG--L-LGFYAQEIELACSEDHV 502 (1325)
Q Consensus 432 ~g~~~~~~~~~~-----~~~~~~v~~-l~~~~d~~lla~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~ 502 (1325)
+ ..+...-|-+ +.....++. +... ++..+++++. ....+|.+.+.... . .....+|.. -+.+.+
T Consensus 412 ~-~~~~l~LCNSIGT~lD~kytdirP~Fv~v-n~~~vviAS~---e~~~iWhy~~pK~~s~l~~~k~rkegr--~h~Ddt 484 (1189)
T KOG2041|consen 412 S-RVYFLQLCNSIGTSLDYKYTDIRPKFVCV-NGICVVIASE---ERYFIWHYVLPKFNSVLAGVKIRKEGR--FHGDDT 484 (1189)
T ss_pred c-ceEEEeeecccCCcCCCCcceeeeeEEEe-cceEEEEecc---ccEEEEEEeccchhhhhhhhhhccccc--ccCCCC
Confidence 0 0011000000 000011211 1111 3344444443 35666665432100 0 000011111 011222
Q ss_pred cccccccccceeeeeecccCCcEEEEeeCCCCCceEEEEeeCCeEEEEeccccccCCCCCCCCCCCCCCCCceeEEEecC
Q 000731 503 QGLLTCAGWHAKVSTQIPLEGLVIAIAPNNAKKYSAFLQFHGGKISEYMSRVGLTGGALTHDDASFPSSCPWMNVVSVGT 582 (1325)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~q~~dG~v~~~~~~~~~~~~~~~~~~~~fp~~c~~~~~~~~~~ 582 (1325)
|.-.....-.+.-++..+..++|.+++-+ .+.+.+....|.|+.|+.+.. ....++|-.|...
T Consensus 485 p~ga~d~~l~ys~kt~~G~~DpICAl~~s---dk~l~vareSG~I~rySl~nv-------~l~n~y~~n~~~y------- 547 (1189)
T KOG2041|consen 485 PEGAQDRTLEYSTKTLLGSKDPICALCIS---DKFLMVARESGGIYRYSLNNV-------VLTNSYPVNPSIY------- 547 (1189)
T ss_pred ccchhhceeeccceeeccCCCcceeeeec---ceEEEEEeccCceEEEEecce-------eeeeccccCchhe-------
Confidence 21100000011123445667888888763 467778889999999975431 0112234333221
Q ss_pred CCCCcceEEEEcCCCceeeCCEeeecCceeEEEeccCccccceEEEEEecCCeEEEEEcCccccccccccccccccccCc
Q 000731 583 NGPLKPLLFGLDDGGRLHVSGKIVCNNCSSFSFYSKSAGQAMSHLILATKQNLLFIVDISDILHGELALKYENFTHVGNR 662 (1325)
Q Consensus 583 ~~~~~~~~~gL~~~~~L~~~~~~~~~~~tSf~~~~~~~~~~~~~Ll~TT~~h~l~~v~l~~~~~~~~~~~~~~~~~~~~~ 662 (1325)
.++=||+|=. |........+-|.+|.- .+
T Consensus 548 ----------------------~~~lNCnstR------------lAiId~~gv~tf~dLd~-d~---------------- 576 (1189)
T KOG2041|consen 548 ----------------------SIKLNCNSTR------------LAIIDLVGVVTFQDLDY-DF---------------- 576 (1189)
T ss_pred ----------------------eEeeccCcch------------hhhhhhhceeeeeeccc-cc----------------
Confidence 1234555421 22223334444444420 00
Q ss_pred cccccccccccccCCCEEEEEeCCCCcEEEEEeCCCceeeccchhhhHHHHHHHHhcccHHHHHHHHhhcccccceEEec
Q 000731 663 RKEENISYINIWERGAKVIGVLHGDEAAVILQTNRGNLECMYPRKLVLTSIVNALIQGRFRDALVMVRRHRINFNVIVDH 742 (1325)
Q Consensus 663 ~~~~~de~~R~vErGs~iV~~~p~~~~~vVLQmpRGNLEtI~PR~lvL~~i~~~l~~~~y~~Af~~~R~hRIdlNll~D~ 742 (1325)
+|-.++...-.+ -| -|-+ + ++ +++--.-|.+|-|.|+ .|++-
T Consensus 577 -------------~g~ql~~~~~~e-rr-----------------DVWd-~-~W--a~dNp~llAlmeKtrm---yifrg 618 (1189)
T KOG2041|consen 577 -------------DGDQLKLIYTSE-RR-----------------DVWD-Y-EW--AQDNPNLLALMEKTRM---YIFRG 618 (1189)
T ss_pred -------------Ccceeeeeehhh-hh-----------------hhhh-h-hh--ccCCchHHhhhhhceE---EEecC
Confidence 111111111111 00 0000 0 00 1122334667888887 56666
Q ss_pred ccHHHHHHhHHHHHhhcCCcchhhHHHhhccCCccccccccccccccCCccccccCCCcccccccCCCchHHHHHHHHHH
Q 000731 743 CGWQAFLQSASEFVRQVNNLSYITEFVCAINNENITETLYKKFQFLSLPCREEFKDLPAKDFKASECNKVSSVLLAIRKA 822 (1325)
Q Consensus 743 ~~p~~Fl~~~~~Fv~qv~~~~~l~lFls~L~~edvt~t~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~KV~~iC~a~~~~ 822 (1325)
|.| .+++.-.-||++|= +=.+|.-+-..- +..|+. + + ..--|+.--.++|+.
T Consensus 619 ndp----------eEp~s~sGyIc~Fe----dLeitsVlld~I--l~~pE~------p--n----k~~ii~~~ikslrD~ 670 (1189)
T KOG2041|consen 619 NDP----------EEPSSVSGYICLFE----DLEITSVLLDKI--LLTPEN------P--N----KTCIIEVMIKSLRDV 670 (1189)
T ss_pred cCc----------cccccccceEEEee----ceEEEEEEHhhH--hcCcCC------C--C----cceEEEEEehhhhhH
Confidence 634 36777778888771 101111000000 100110 0 0 000111112223333
Q ss_pred HhhcCCCCCCchhHhhhHhhcCCChhHHHHHHHHHHHHhhcccCCCCCCCCChhhHHHHHHHHHhhccHHHHHHHHHhcc
Q 000731 823 LEEKVPESPSRELCILTTLARSDPPALEEALERIKIIRETELLGSDEPRRMSYPSAEEALKHLLWLADSEAVYEAALGLY 902 (1325)
Q Consensus 823 l~~~~~~~~~~~~~ilT~~~~~~pp~le~aL~~i~~l~~~~~~~~~~~~~~~~~~ae~alkyl~~L~d~n~Ly~~ALg~Y 902 (1325)
+.= +-+. .||+|-+.|.. + | .|. + +.-|.+.||...
T Consensus 671 ~~L----------------ve~v--gledA~qfiEd---n-------P---Hpr---------L----WrllAe~Al~Kl 706 (1189)
T KOG2041|consen 671 MNL----------------VEAV--GLEDAIQFIED---N-------P---HPR---------L----WRLLAEYALFKL 706 (1189)
T ss_pred HHH----------------HHHh--chHHHHHHHhc---C-------C---chH---------H----HHHHHHHHHHHH
Confidence 210 0001 15555444320 0 0 111 1 234567777666
Q ss_pred ChhHHHHHHHHhcCCcccc--hHhHHHHhcC-CchhccccHHHhhcCHHHHHHHHHHcCCCcHHHHHHHHHHHhcChHHH
Q 000731 903 DLNLAAIVALNSQRDPKEF--LPYLQELESM-PPLLMRYTIDLRLQRFENALKHIVSMGDSYHADCLNLMKKYAQLFPLG 979 (1325)
Q Consensus 903 D~~lal~VAq~sqkDPkeY--LpfL~~L~~l-~~~~~~~~Id~~L~rye~Al~~l~~~g~~~~d~ale~~~~~~~ly~~A 979 (1325)
+|+ .|++|+..+++| +.|+++|+.+ .+..||++|-.|.|+||+|.+.|.++ +|.|.|++|+++. +.|.+.
T Consensus 707 ~l~----tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~--drrDLAielr~kl-gDwfrV 779 (1189)
T KOG2041|consen 707 ALD----TAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDA--DRRDLAIELRKKL-GDWFRV 779 (1189)
T ss_pred hhh----hHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhcc--chhhhhHHHHHhh-hhHHHH
Confidence 655 489999999999 9999999999 88999999999999999999999998 7799999999999 999999
Q ss_pred Hhhc------CCcHHHHHHHHHHHHHHhccccHHHHHHHHHHcCCHHHHHHHHHHcCCHHHHHHHHhhcCCCHHHHHHHH
Q 000731 980 LKLI------TDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLA 1053 (1325)
Q Consensus 980 L~L~------~d~~~~~~i~~~~a~~L~~~~~~~eAa~~y~~ag~~ekAl~~y~~ag~W~~al~la~~l~~~~~~~~~l~ 1053 (1325)
++|+ .|++......+..|+|+.+..+|++|+.+|.++|+.+.-++||++..++.++..+|+.++.+ .+++
T Consensus 780 ~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ecly~le~f~~LE~la~~Lpe~----s~ll 855 (1189)
T KOG2041|consen 780 YQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTENQIECLYRLELFGELEVLARTLPED----SELL 855 (1189)
T ss_pred HHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHHHHHhhhhHHHHHHhcCcc----cchH
Confidence 9999 25667888999999999999999999999999999999999999999999999999999855 5789
Q ss_pred HHHHHHHHHcCChHHHHHHHHHhcCCHHHHHHHHHHhcCHHHHHHHHHhcCCchh
Q 000731 1054 QELCEELQALGKPGEAAKIALDYCGDVTNGISLLIDARDWEEALRVAFMHRREDL 1108 (1325)
Q Consensus 1054 ~~la~~L~~~~~~~eAa~i~~~yl~d~e~Av~~~~~~~~w~eA~rLa~~~~~~dL 1108 (1325)
..+|+.|.+.|++++|.++|++ .++++.||..|++.++|.+|+.||..|..|++
T Consensus 856 p~~a~mf~svGMC~qAV~a~Lr-~s~pkaAv~tCv~LnQW~~avelaq~~~l~qv 909 (1189)
T KOG2041|consen 856 PVMADMFTSVGMCDQAVEAYLR-RSLPKAAVHTCVELNQWGEAVELAQRFQLPQV 909 (1189)
T ss_pred HHHHHHHHhhchHHHHHHHHHh-ccCcHHHHHHHHHHHHHHHHHHHHHhccchhH
Confidence 9999999999999999999999 99999999999999999999999999998774
No 5
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=100.00 E-value=1.5e-33 Score=324.77 Aligned_cols=758 Identities=17% Similarity=0.197 Sum_probs=441.5
Q ss_pred CCEEEEEEccCCCEEEEEECCCcEEEEeCCCC-eEEEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeee
Q 000731 76 DSITAFDYLMEKEALIVGTSSGLLLLHSVDGN-ATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENP 154 (1325)
Q Consensus 76 ~~V~~v~~spdg~~La~as~dG~I~lw~~~~~-~~e~vg~~~~~I~~~awSPDG~~LA~~s~dgtV~l~s~~~d~~~e~~ 154 (1325)
..|.+++|-|||..|+++. +..+.+||++.| .+..+..|.+.|.|++||.||++.|+|+.|+.|++|+..-+-+...
T Consensus 13 hci~d~afkPDGsqL~lAA-g~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~LkY- 90 (1081)
T KOG1538|consen 13 HCINDIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKY- 90 (1081)
T ss_pred cchheeEECCCCceEEEec-CCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccceeee-
Confidence 3799999999999998874 567899999765 5566666799999999999999999999999999987533322111
Q ss_pred ccccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeecCCCCceeEEEEccCC
Q 000731 155 LEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSG 234 (1325)
Q Consensus 155 l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~~~v~~lawsPdG 234 (1325)
.|.+.|.+++|+|=.+.+||++ . ..+-+|+.+. +-...-. ....+.+.+|..||
T Consensus 91 ----------------SH~D~IQCMsFNP~~h~LasCs-L-------sdFglWS~~q-K~V~K~k-ss~R~~~CsWtnDG 144 (1081)
T KOG1538|consen 91 ----------------SHNDAIQCMSFNPITHQLASCS-L-------SDFGLWSPEQ-KSVSKHK-SSSRIICCSWTNDG 144 (1081)
T ss_pred ----------------ccCCeeeEeecCchHHHhhhcc-h-------hhccccChhh-hhHHhhh-hheeEEEeeecCCC
Confidence 3667889999999999999554 3 3567898833 2222111 23346889999999
Q ss_pred CeEEEEecCCCCCCCCeEEEEeCCCceEEEEEeccCCCCcEEEEEEccCCC-----eeEEEEccCCCCeEEEEEeeCCee
Q 000731 235 ANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSD-----LLAAVVRFEEYDSVKICFFSNNHW 309 (1325)
Q Consensus 235 ~~IAs~~~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~-----~LAs~~~d~~~~~VqLW~~~n~~w 309 (1325)
+++|-|-.+ ++|.+-+++|...+...-|+.....|++|+|||.+. ++|+..... |+-+++++...-
T Consensus 145 qylalG~~n------GTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~q---TLSFy~LsG~~I 215 (1081)
T KOG1538|consen 145 QYLALGMFN------GTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQ---TLSFYQLSGKQI 215 (1081)
T ss_pred cEEEEeccC------ceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccc---eeEEEEecceee
Confidence 999999875 568888998877664444444457899999999874 455544443 444444433100
Q ss_pred EEEeEEEEecCCcEEEEEccCCCcEEEEEecCCcEEEEEEEEeeeeCCCeeEEEEeCCEEEEeecCCcCCCCCceeeee-
Q 000731 310 YLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSL- 388 (1325)
Q Consensus 310 ylkqel~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDG~~l~lt~l~~~~vPpPm~~~~l- 388 (1325)
-....+.| ++.++..-|.|-..| ++..++.+..+ .-+| |++. ++
T Consensus 216 gk~r~L~F---dP~CisYf~NGEy~L-iGGsdk~L~~f---------------TR~G--vrLG--------------Tvg 260 (1081)
T KOG1538|consen 216 GKDRALNF---DPCCISYFTNGEYIL-LGGSDKQLSLF---------------TRDG--VRLG--------------TVG 260 (1081)
T ss_pred cccccCCC---CchhheeccCCcEEE-EccCCCceEEE---------------eecC--eEEe--------------ecc
Confidence 00001111 123344444444322 22222222211 0122 2221 22
Q ss_pred cCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccccccCCceeEeeecc---------cccc-----CcEEEEE
Q 000731 389 KFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACIS---------ETAF-----GSVIHLI 454 (1325)
Q Consensus 389 ~~~~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~~~~~~~~~~~~g~~~~~~~~~~---------~~~~-----~~v~~l~ 454 (1325)
+++.|||.|+..|++ +..+++..||||.-|++... +.+.+....+..-.++. .+.. +-|..++
T Consensus 261 ~~D~WIWtV~~~PNs--Q~v~~GCqDGTiACyNl~fS-TVH~ly~~RYA~R~sMtDVivQhLi~~qkvrIkC~DLVkKia 337 (1081)
T KOG1538|consen 261 EQDSWIWTVQAKPNS--QYVVVGCQDGTIACYNLIFS-TVHGLYKDRYAYRDSMTDVIVQHLITEQKVRIKCKDLVKKIA 337 (1081)
T ss_pred ccceeEEEEEEccCC--ceEEEEEccCeeehhhhHHh-HhhhhhHHhhhhhhhhHHHHHHHHhhcceeeeeHHHHHHHHH
Confidence 357899999999999 99999999999999987531 11111110110000000 0000 0011111
Q ss_pred EecCCeEEEEEecCCCCceEEEEeecccCccccchhhhhhhhcccccccccccccccceeeeeecccCCcEEEEeeCCCC
Q 000731 455 WLGSHLLLSVSHHGPRHSNYFRGATLNEDGLLGFYAQEIELACSEDHVQGLLTCAGWHAKVSTQIPLEGLVIAIAPNNAK 534 (1325)
Q Consensus 455 ~~~d~~lla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 534 (1325)
... .-||+- -+..+.++.+.. + +. ..-++++...+.-+ -
T Consensus 338 iYr--nrLAVQ---Lpeki~iYel~s-e-----------------~~-------~~mhY~v~ekI~kk-----------f 376 (1081)
T KOG1538|consen 338 IYR--NRLAVQ---LPEKILIYELYS-E-----------------DL-------SDMHYRVKEKIIKK-----------F 376 (1081)
T ss_pred hhh--hhheec---ccceEEEEeccc-c-----------------cc-------ccchhHHHHHHHhh-----------c
Confidence 111 123432 224555665531 1 10 00112211110000 0
Q ss_pred CceEEEEeeCCeEEEEeccc-cccC-CCCCCCCCCCCCCCCceeEEEecCCCCCcceEEEEcCCCceeeCCEeeecCcee
Q 000731 535 KYSAFLQFHGGKISEYMSRV-GLTG-GALTHDDASFPSSCPWMNVVSVGTNGPLKPLLFGLDDGGRLHVSGKIVCNNCSS 612 (1325)
Q Consensus 535 ~~~~~~q~~dG~v~~~~~~~-~~~~-~~~~~~~~~fp~~c~~~~~~~~~~~~~~~~~~~gL~~~~~L~~~~~~~~~~~tS 612 (1325)
..++.+. ..|.++.....- .+-+ ..+....-....+-.++.|.- ++.| -+.+++||.+.+-+-+
T Consensus 377 ~cSLlVV-c~~HiVlCqekrLqClDF~Gvk~ReW~M~S~iRYikV~G-GP~g-REgL~vGlknGqV~ki----------- 442 (1081)
T KOG1538|consen 377 ECSLLVV-CANHIVLCQEKRLQCLDFSGVKEREWQMESLIRYIKVIG-GPPG-REGLLVGLKNGQVLKI----------- 442 (1081)
T ss_pred cceEEEE-EcCeEEEEcccceeeecccchhhhhhhHHHHHHhhhhhc-CCCC-cceeEEEecCCcEEEE-----------
Confidence 1122222 223333221100 0000 000000001111112222220 1112 1347999987654432
Q ss_pred EEEeccCccccceEEEEEecCCeEEEEEcCccccccccccccccccccCccccccccccccccCCCEEEEEeCCCCcEEE
Q 000731 613 FSFYSKSAGQAMSHLILATKQNLLFIVDISDILHGELALKYENFTHVGNRRKEENISYINIWERGAKVIGVLHGDEAAVI 692 (1325)
Q Consensus 613 f~~~~~~~~~~~~~Ll~TT~~h~l~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~de~~R~vErGs~iV~~~p~~~~~vV 692 (1325)
.+.++ . =+|++|+..-.+|++++..- +.+.+-. |.|--+|.=+-++ -+.
T Consensus 443 -F~dN~-----~-PiLl~~~~tAvrClDINA~R-~kLAvVD---------------------D~~~c~v~DI~t~--elL 491 (1081)
T KOG1538|consen 443 -FVDNL-----F-PILLLKQATAVRCLDINASR-KKLAVVD---------------------DNDTCLVYDIDTK--ELL 491 (1081)
T ss_pred -EecCC-----c-hhheecccceeEEeeccCCc-ceEEEEc---------------------cCCeEEEEEccCC--ceE
Confidence 33333 1 24566777789999987421 1111111 1122233333333 445
Q ss_pred EEeCCCceeeccchhhhHHHHHHHHhcccHHHHHHHHhhcccccceEEecccHHHHHHhHHHHHhhcCCcchhhHHHhhc
Q 000731 693 LQTNRGNLECMYPRKLVLTSIVNALIQGRFRDALVMVRRHRINFNVIVDHCGWQAFLQSASEFVRQVNNLSYITEFVCAI 772 (1325)
Q Consensus 693 LQmpRGNLEtI~PR~lvL~~i~~~l~~~~y~~Af~~~R~hRIdlNll~D~~~p~~Fl~~~~~Fv~qv~~~~~l~lFls~L 772 (1325)
+|-|--|==+.+-.- .. .+|=+|.=.||+=.--- |..- .+..-||=-
T Consensus 492 ~QEpg~nSV~wNT~~------E~-----------MlcfT~~g~L~VR~~~~-P~h~-qk~~G~VvG-------------- 538 (1081)
T KOG1538|consen 492 FQEPGANSVAWNTQC------ED-----------MLCFTGGGYLNVRASTF-PVHR-QKLQGFVVG-------------- 538 (1081)
T ss_pred eecCCCceEEeeccc------cc-----------eEEEecCCceEEEeccC-Ccch-hcceEEEEE--------------
Confidence 555544433322110 00 01112222222222211 1110 010011100
Q ss_pred cCCccccccccccccccCCccccccCCCcccccccCCCchHHHHHHH--HHHHhhcCCCCCCchhHhhhHhhcCCChhHH
Q 000731 773 NNENITETLYKKFQFLSLPCREEFKDLPAKDFKASECNKVSSVLLAI--RKALEEKVPESPSRELCILTTLARSDPPALE 850 (1325)
Q Consensus 773 ~~edvt~t~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~KV~~iC~a~--~~~l~~~~~~~~~~~~~ilT~~~~~~pp~le 850 (1325)
..++|+ .|-.. ..+++- +......|+ +-.. .+.
T Consensus 539 ----------------------------------~~gsk~--FCL~~~~i~~~ev--p~~~~m~q~-----Ieag--~f~ 573 (1081)
T KOG1538|consen 539 ----------------------------------YNGSKI--FCLHVFSISAVEV--PQSAPMYQY-----IERG--LFK 573 (1081)
T ss_pred ----------------------------------ecCceE--EEEEeeeeecccc--cccccchhh-----hhcc--chh
Confidence 000110 01100 000110 111111111 0000 022
Q ss_pred HHHHHHHHHHhhcccCCCCCCCCChhhHHHHHHHHHhhccHHHHHHHHHhccChhHHHHHHHHhcCCccc--chHhHHHH
Q 000731 851 EALERIKIIRETELLGSDEPRRMSYPSAEEALKHLLWLADSEAVYEAALGLYDLNLAAIVALNSQRDPKE--FLPYLQEL 928 (1325)
Q Consensus 851 ~aL~~i~~l~~~~~~~~~~~~~~~~~~ae~alkyl~~L~d~n~Ly~~ALg~YD~~lal~VAq~sqkDPke--YLpfL~~L 928 (1325)
+|++. .-+ . ....|+..|.+.||...||+. |++|.+.-++ ||-++-+|
T Consensus 574 ea~~i-acl--------------g-----------Vv~~DW~~LA~~ALeAL~f~~----ARkAY~rVRdl~~L~li~EL 623 (1081)
T KOG1538|consen 574 EAYQI-ACL--------------G-----------VTDTDWRELAMEALEALDFET----ARKAYIRVRDLRYLELISEL 623 (1081)
T ss_pred hhhcc-ccc--------------c-----------eecchHHHHHHHHHhhhhhHH----HHHHHHHHhccHHHHHHHHH
Confidence 22222 000 0 123488999999999999996 5666543333 57777788
Q ss_pred hcC------CchhccccHHHhhcCHHHHHHHHHHcCCCcHHHHHHHHHHHhcChHHHHhhc--CCcHHHHHHHHHHHHHH
Q 000731 929 ESM------PPLLMRYTIDLRLQRFENALKHIVSMGDSYHADCLNLMKKYAQLFPLGLKLI--TDPAKMEQVLEAWADHL 1000 (1325)
Q Consensus 929 ~~l------~~~~~~~~Id~~L~rye~Al~~l~~~g~~~~d~ale~~~~~~~ly~~AL~L~--~d~~~~~~i~~~~a~~L 1000 (1325)
+++ |....+++|.+|.|+|.+|.++|.++|.+ ..|+||+.+. ++|+.|-+.+ +++++.+.+.++.|+|.
T Consensus 624 ~~~k~rge~P~~iLlA~~~Ay~gKF~EAAklFk~~G~e--nRAlEmyTDl-RMFD~aQE~~~~g~~~eKKmL~RKRA~WA 700 (1081)
T KOG1538|consen 624 EERKKRGETPNDLLLADVFAYQGKFHEAAKLFKRSGHE--NRALEMYTDL-RMFDYAQEFLGSGDPKEKKMLIRKRADWA 700 (1081)
T ss_pred HHHHhcCCCchHHHHHHHHHhhhhHHHHHHHHHHcCch--hhHHHHHHHH-HHHHHHHHHhhcCChHHHHHHHHHHHHHh
Confidence 764 45788899999999999999999999984 9999999999 9999999998 89999999999999999
Q ss_pred hccccHHHHHHHHHHcCCHHHHHHHHHHcCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcCCH
Q 000731 1001 SDVKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCGDV 1080 (1325)
Q Consensus 1001 ~~~~~~~eAa~~y~~ag~~ekAl~~y~~ag~W~~al~la~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~yl~d~ 1080 (1325)
.+-++.+.||+|..++|+..||++.-...|.-+.++.|++++. ..++ +-+..+|..|...+.+.-|++||.+ +||.
T Consensus 701 r~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld--~~er-e~l~~~a~ylk~l~~~gLAaeIF~k-~gD~ 776 (1081)
T KOG1538|consen 701 RNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLD--KAER-EPLLLCATYLKKLDSPGLAAEIFLK-MGDL 776 (1081)
T ss_pred hhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcc--hhhh-hHHHHHHHHHhhccccchHHHHHHH-hccH
Confidence 9999999999999999999999999999998888899999885 4554 4677899999999999999999999 9999
Q ss_pred HHHHHHHHHhcCHHHHHHHHHhcCCchhHHH
Q 000731 1081 TNGISLLIDARDWEEALRVAFMHRREDLITK 1111 (1325)
Q Consensus 1081 e~Av~~~~~~~~w~eA~rLa~~~~~~dL~e~ 1111 (1325)
+.-|+|+++.++|.||++||++|+ +++++
T Consensus 777 ksiVqlHve~~~W~eAFalAe~hP--e~~~d 805 (1081)
T KOG1538|consen 777 KSLVQLHVETQRWDEAFALAEKHP--EFKDD 805 (1081)
T ss_pred HHHhhheeecccchHhHhhhhhCc--ccccc
Confidence 999999999999999999999994 77776
No 6
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.5e-31 Score=294.39 Aligned_cols=321 Identities=13% Similarity=0.114 Sum_probs=244.0
Q ss_pred ccceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcE
Q 000731 20 DEILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLL 99 (1325)
Q Consensus 20 ~~~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~V~~v~~spdg~~La~as~dG~I 99 (1325)
++.+.+..|.+++..|.++|.|..+..||+ .+..- ..+ .++| ...|.+|+|+|||+.||+|+.||+|
T Consensus 115 ~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~--~TeTp---~~t----~KgH----~~WVlcvawsPDgk~iASG~~dg~I 181 (480)
T KOG0271|consen 115 GEAVLSVQFSPTGSRLVTGSGDTTVRLWDL--DTETP---LFT----CKGH----KNWVLCVAWSPDGKKIASGSKDGSI 181 (480)
T ss_pred CCcEEEEEecCCCceEEecCCCceEEeecc--CCCCc---cee----ecCC----ccEEEEEEECCCcchhhccccCCeE
Confidence 448899999999999999999999999999 34321 111 4555 3589999999999999999999999
Q ss_pred EEEeCCCCeEE--EeceecCcEEEEEE-----cCCCCeEEEEeCCccEEEEeecCceeeeeeccccCCCceeccCccccC
Q 000731 100 LLHSVDGNATE--VVGRVEGGVRFISP-----SPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSS 172 (1325)
Q Consensus 100 ~lw~~~~~~~e--~vg~~~~~I~~~aw-----SPDG~~LA~~s~dgtV~l~s~~~d~~~e~~l~~~~~~~~Vs~tqf~~~ 172 (1325)
.+||+.+++.. .+..|..+|++++| .|.+.+||+++.||+|+||+ .....++.... +|
T Consensus 182 ~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd----~~~~~~~~~ls-----------gH 246 (480)
T KOG0271|consen 182 RLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWD----TKLGTCVRTLS-----------GH 246 (480)
T ss_pred EEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEE----ccCceEEEEec-----------cC
Confidence 99999886543 44457999999999 56789999999999998875 33333332222 66
Q ss_pred CCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeecCCCCceeEEEEc-----------cCCCe-----
Q 000731 173 FSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWM-----------PSGAN----- 236 (1325)
Q Consensus 173 ~~~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~~~v~~laws-----------PdG~~----- 236 (1325)
...|++|.|-|+| ++. ++| .||+||||+..+|.+..++.+|..+|+.|+.| |.|+.
T Consensus 247 T~~VTCvrwGG~g-liy-SgS------~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~s 318 (480)
T KOG0271|consen 247 TASVTCVRWGGEG-LIY-SGS------QDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFS 318 (480)
T ss_pred ccceEEEEEcCCc-eEE-ecC------CCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChH
Confidence 7788999999999 556 564 46999999999999999999999999999877 44544
Q ss_pred --------------------EEEEecCCCCCCCCeEEEEeCCCceEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCC
Q 000731 237 --------------------IAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEY 296 (1325)
Q Consensus 237 --------------------IAs~~~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~ 296 (1325)
++|+++| .++.+|+.+-...-.-.+ ..+..-|+.+.|||||.++|+++-|.
T Consensus 319 e~~~~Al~rY~~~~~~~~erlVSgsDd------~tlflW~p~~~kkpi~rm-tgHq~lVn~V~fSPd~r~IASaSFDk-- 389 (480)
T KOG0271|consen 319 EEQKKALERYEAVLKDSGERLVSGSDD------FTLFLWNPFKSKKPITRM-TGHQALVNHVSFSPDGRYIASASFDK-- 389 (480)
T ss_pred HHHHHHHHHHHHhhccCcceeEEecCC------ceEEEecccccccchhhh-hchhhheeeEEECCCccEEEEeeccc--
Confidence 9999986 579999865322110011 22356799999999999999999999
Q ss_pred CeEEEEEeeCCeeEEEeEEEEecCCcEEEEEccCCCcEEEEEecCCcEEEEEEEEeeeeCCCeeEEEEeCCEEEEeecCC
Q 000731 297 DSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSL 376 (1325)
Q Consensus 297 ~~VqLW~~~n~~wylkqel~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDG~~l~lt~l~~ 376 (1325)
.|+||+..+++. + ..++.|-.....++|+.|..+ |..++ .++++++|+++.
T Consensus 390 -SVkLW~g~tGk~-l-asfRGHv~~VYqvawsaDsRL-lVS~S-------------------------kDsTLKvw~V~t 440 (480)
T KOG0271|consen 390 -SVKLWDGRTGKF-L-ASFRGHVAAVYQVAWSADSRL-LVSGS-------------------------KDSTLKVWDVRT 440 (480)
T ss_pred -ceeeeeCCCcch-h-hhhhhccceeEEEEeccCccE-EEEcC-------------------------CCceEEEEEeee
Confidence 999999887642 2 234433333366788877643 22222 345677777664
Q ss_pred cCCCCCceeeee-cCCCCEEEEEEecCCCCCEEEEEECCCcEEEEe
Q 000731 377 SLMPPPMYLFSL-KFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVD 421 (1325)
Q Consensus 377 ~~vPpPm~~~~l-~~~~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~ 421 (1325)
.-+ .+.| .|.+.|.+|.||||| +.+|+++.|..++||.
T Consensus 441 kKl-----~~DLpGh~DEVf~vDwspDG--~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 441 KKL-----KQDLPGHADEVFAVDWSPDG--QRVASGGKDKVLRLWR 479 (480)
T ss_pred eee-----cccCCCCCceEEEEEecCCC--ceeecCCCceEEEeec
Confidence 322 1234 388899999999999 8999999999999995
No 7
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=1.3e-30 Score=286.91 Aligned_cols=344 Identities=14% Similarity=0.148 Sum_probs=243.0
Q ss_pred ceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeeeccccCCCceeccCccccCCCCeEEEEEecCCcEEEEee
Q 000731 113 GRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLS 192 (1325)
Q Consensus 113 g~~~~~I~~~awSPDG~~LA~~s~dgtV~l~s~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvs 192 (1325)
..|.+.|.|++|||||..||+|++|.|+++ ||+.++.++++-. +|++.|.+|+|||||+.|| ++
T Consensus 112 ~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~----WD~~TeTp~~t~K-----------gH~~WVlcvawsPDgk~iA-SG 175 (480)
T KOG0271|consen 112 AGHGEAVLSVQFSPTGSRLVTGSGDTTVRL----WDLDTETPLFTCK-----------GHKNWVLCVAWSPDGKKIA-SG 175 (480)
T ss_pred CCCCCcEEEEEecCCCceEEecCCCceEEe----eccCCCCcceeec-----------CCccEEEEEEECCCcchhh-cc
Confidence 346899999999999999999999999966 5666777776554 7888899999999999999 66
Q ss_pred ccccccCCCCEEEEEECCCCcee-eeecCCCCceeEEEEcc-----CCCeEEEEecCCCCCCCCeEEEEeCCCceEEEEE
Q 000731 193 EFCNSSKLHKRLKVWERDSGTLQ-ASSELKAFMGAVLEWMP-----SGANIAAVYDRKSENKCPSIVFYERNGLERSSFD 266 (1325)
Q Consensus 193 s~d~~~~~d~~irVWd~~~G~l~-~t~e~~~~~v~~lawsP-----dG~~IAs~~~d~~~~~~~~V~~~e~nGl~~~~f~ 266 (1325)
+ .+++|++||+.+|++. ..+.+|..+|.+|+|.| .++++||++.| ++|++|+.++. .-.++
T Consensus 176 ~------~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skD------g~vrIWd~~~~-~~~~~ 242 (480)
T KOG0271|consen 176 S------KDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKD------GSVRIWDTKLG-TCVRT 242 (480)
T ss_pred c------cCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCC------CCEEEEEccCc-eEEEE
Confidence 4 3589999998887654 46788999999999965 67899999986 57999998752 23445
Q ss_pred eccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeEEEeEEEEecCCcEEEE-----------EccCCCcEE
Q 000731 267 INEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFM-----------WHPTKPLQL 335 (1325)
Q Consensus 267 l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~n~~wylkqel~~~~~~~~~v~-----------Wsp~~~~~L 335 (1325)
+.+| +..|.+|.|--+| +|++++.|+ +|++|+...+. +..++..|..-...++ |+|.+.. .
T Consensus 243 lsgH-T~~VTCvrwGG~g-liySgS~Dr---tIkvw~a~dG~--~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~-~ 314 (480)
T KOG0271|consen 243 LSGH-TASVTCVRWGGEG-LIYSGSQDR---TIKVWRALDGK--LCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRK-P 314 (480)
T ss_pred eccC-ccceEEEEEcCCc-eEEecCCCc---eEEEEEccchh--HHHhhcccchheeeeeccchhhhhcccccccccc-C
Confidence 5544 7889999999887 899999999 99999987532 2334444433223333 3333221 0
Q ss_pred EEEecCC--cEEEEEEEEeeeeCCCeeEEEEeCCEEEEee-cCCcCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEE
Q 000731 336 ICWTLDG--QITTYNFIWTTAVMENSTALVIDGSKILVTP-LSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAIL 412 (1325)
Q Consensus 336 ~~~~~~g--~~~~~~~~~~~~~~d~~~v~viDG~~l~lt~-l~~~~vPpPm~~~~l~~~~~V~~VaFSpdg~~~~LAs~s 412 (1325)
...+... .+..|+.+-. -++..+|...|+.++.+|. +... .|.. +-..|..-|+.|+||||+ ..+|+++
T Consensus 315 ~~~se~~~~Al~rY~~~~~--~~~erlVSgsDd~tlflW~p~~~k---kpi~-rmtgHq~lVn~V~fSPd~--r~IASaS 386 (480)
T KOG0271|consen 315 KSFSEEQKKALERYEAVLK--DSGERLVSGSDDFTLFLWNPFKSK---KPIT-RMTGHQALVNHVSFSPDG--RYIASAS 386 (480)
T ss_pred CChHHHHHHHHHHHHHhhc--cCcceeEEecCCceEEEecccccc---cchh-hhhchhhheeeEEECCCc--cEEEEee
Confidence 0000000 0000000000 1223578888888988884 3221 1111 112578889999999999 9999999
Q ss_pred CCCcEEEEeCCCCCccccccCCceeEeeeccccccCcEEEEEEecCCeEEEEEecCCCCceEEEEeecccCccccchhhh
Q 000731 413 SDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGATLNEDGLLGFYAQE 492 (1325)
Q Consensus 413 ~Dgti~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (1325)
-|..|+||+-.+..-+..+-| |.+.|.+++|+.|.++|++++.+ +++++|.+.-.
T Consensus 387 FDkSVkLW~g~tGk~lasfRG------------Hv~~VYqvawsaDsRLlVS~SkD--sTLKvw~V~tk----------- 441 (480)
T KOG0271|consen 387 FDKSVKLWDGRTGKFLASFRG------------HVAAVYQVAWSADSRLLVSGSKD--STLKVWDVRTK----------- 441 (480)
T ss_pred cccceeeeeCCCcchhhhhhh------------ccceeEEEEeccCccEEEEcCCC--ceEEEEEeeee-----------
Confidence 999999999876544433444 46789999999999999988766 68888887311
Q ss_pred hhhhcccccccccccccccceeeeeecccCCcEEEEeeCCCCCceEEEEeeCCeE
Q 000731 493 IELACSEDHVQGLLTCAGWHAKVSTQIPLEGLVIAIAPNNAKKYSAFLQFHGGKI 547 (1325)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~q~~dG~v 547 (1325)
-.......+.+.|..+-++| |++.++.-..|.-+
T Consensus 442 --------------------Kl~~DLpGh~DEVf~vDwsp-DG~rV~sggkdkv~ 475 (480)
T KOG0271|consen 442 --------------------KLKQDLPGHADEVFAVDWSP-DGQRVASGGKDKVL 475 (480)
T ss_pred --------------------eecccCCCCCceEEEEEecC-CCceeecCCCceEE
Confidence 01122344677888999998 88877766555333
No 8
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=2.5e-28 Score=272.92 Aligned_cols=278 Identities=15% Similarity=0.128 Sum_probs=218.0
Q ss_pred CCEEEEEEccCCCEEEEEECCCcEEEEeCCCCe-EEEeceecCcEEEEEEcCC--CCeEEEEeCCccEEEEeecCceeee
Q 000731 76 DSITAFDYLMEKEALIVGTSSGLLLLHSVDGNA-TEVVGRVEGGVRFISPSPD--GDLLGVTTGFGQILVMTHDWDLLYE 152 (1325)
Q Consensus 76 ~~V~~v~~spdg~~La~as~dG~I~lw~~~~~~-~e~vg~~~~~I~~~awSPD--G~~LA~~s~dgtV~l~s~~~d~~~e 152 (1325)
..|..+.||+|++.||+||-+|++++|+..+.. +..+-.|.+.|.++.|+|. +..||+++.||+|++|.-+ .+
T Consensus 176 rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~----~e 251 (459)
T KOG0272|consen 176 RPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLS----QE 251 (459)
T ss_pred CcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccC----CC
Confidence 578899999999999999999999999998753 3344446899999999998 6799999999999987543 33
Q ss_pred eeccccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeecCCCCceeEEEEcc
Q 000731 153 NPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMP 232 (1325)
Q Consensus 153 ~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~~~v~~lawsP 232 (1325)
.++.... +|...|..++|.|+|+||+ ++++ |.+-|+||.+++..+--.|+|+..|.+++|.|
T Consensus 252 ~~l~~l~-----------gH~~RVs~VafHPsG~~L~-Tasf------D~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~ 313 (459)
T KOG0272|consen 252 TPLQDLE-----------GHLARVSRVAFHPSGKFLG-TASF------DSTWRLWDLETKSELLLQEGHSKGVFSIAFQP 313 (459)
T ss_pred cchhhhh-----------cchhhheeeeecCCCceee-eccc------ccchhhcccccchhhHhhcccccccceeEecC
Confidence 3443332 6667889999999999999 5655 48999999999998888899999999999999
Q ss_pred CCCeEEEEecCCCCCCCCeEEEEe-CCCceEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeEE
Q 000731 233 SGANIAAVYDRKSENKCPSIVFYE-RNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYL 311 (1325)
Q Consensus 233 dG~~IAs~~~d~~~~~~~~V~~~e-~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~n~~wyl 311 (1325)
||.++|||+-|. .=++|| |.|.. ...|.+ |...|.+|+|||+|-.||+++.|. ++++||+..-. .
T Consensus 314 DGSL~~tGGlD~------~~RvWDlRtgr~--im~L~g-H~k~I~~V~fsPNGy~lATgs~Dn---t~kVWDLR~r~--~ 379 (459)
T KOG0272|consen 314 DGSLAATGGLDS------LGRVWDLRTGRC--IMFLAG-HIKEILSVAFSPNGYHLATGSSDN---TCKVWDLRMRS--E 379 (459)
T ss_pred CCceeeccCccc------hhheeecccCcE--EEEecc-cccceeeEeECCCceEEeecCCCC---cEEEeeecccc--c
Confidence 999999999874 356799 45532 233444 356799999999999999999999 99999986432 1
Q ss_pred EeEEEEecCCcEEEEEccCCCcEEEEEecCCcEEEEEEEEeeeeCCCeeEEEEeCCEEEEeecCCcCCCCCceeeee-cC
Q 000731 312 KYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSL-KF 390 (1325)
Q Consensus 312 kqel~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDG~~l~lt~l~~~~vPpPm~~~~l-~~ 390 (1325)
...+..|.+-+..|.|+|+.+.-|...+-|+ ++++|.-..|. +.+++ .|
T Consensus 380 ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~-------------------------t~kiWs~~~~~-----~~ksLaGH 429 (459)
T KOG0272|consen 380 LYTIPAHSNLVSQVKYSPQEGYFLVTASYDN-------------------------TVKIWSTRTWS-----PLKSLAGH 429 (459)
T ss_pred ceecccccchhhheEecccCCeEEEEcccCc-------------------------ceeeecCCCcc-----cchhhcCC
Confidence 2355555555577999997665444433333 44455433332 23455 59
Q ss_pred CCCEEEEEEecCCCCCEEEEEECCCcEEEEe
Q 000731 391 PTAVTEMAFYSKSSKNCLAAILSDGCLCVVD 421 (1325)
Q Consensus 391 ~~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~ 421 (1325)
.+.|.+|+.|||+ +.+++++.|.+++||.
T Consensus 430 e~kV~s~Dis~d~--~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 430 EGKVISLDISPDS--QAIATSSFDRTIKLWR 458 (459)
T ss_pred ccceEEEEeccCC--ceEEEeccCceeeecc
Confidence 9999999999999 9999999999999996
No 9
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.95 E-value=2.1e-24 Score=246.53 Aligned_cols=442 Identities=12% Similarity=0.090 Sum_probs=284.0
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEE
Q 000731 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1325)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~V~~v~~spdg~~La~as~dG~I~l 101 (1325)
...-+..|+-+|.+..++..+ ++.-++ .+... ..+ ..+| ...++-..|||.|.++|+|-..|+|++
T Consensus 20 ~~~~ig~dpkgd~ilY~nGks-v~ir~i--~~~~~-~~i------YtEH----~~~vtVAkySPsG~yiASGD~sG~vRI 85 (603)
T KOG0318|consen 20 VPIIIGGDPKGDNILYTNGKS-VIIRNI--DNPAS-VDI------YTEH----AHQVTVAKYSPSGFYIASGDVSGKVRI 85 (603)
T ss_pred cceEeccCCCCCeEEEeCCCE-EEEEEC--CCccc-eee------eccc----cceeEEEEeCCCceEEeecCCcCcEEE
Confidence 566778899998887777666 555555 22221 111 3444 346888999999999999999999999
Q ss_pred EeCCCC-e-EE-EeceecCcEEEEEEcCCCCeEEEEeCC----ccEEEEeecCceeeeeeccccC---------------
Q 000731 102 HSVDGN-A-TE-VVGRVEGGVRFISPSPDGDLLGVTTGF----GQILVMTHDWDLLYENPLEELA--------------- 159 (1325)
Q Consensus 102 w~~~~~-~-~e-~vg~~~~~I~~~awSPDG~~LA~~s~d----gtV~l~s~~~d~~~e~~l~~~~--------------- 159 (1325)
|+.... . ++ .+.-+.+.|..++|++||+.||.+++- |.+.+|+. +..+-|+..|...
T Consensus 86 Wdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DS-G~SvGei~GhSr~ins~~~KpsRPfRi~ 164 (603)
T KOG0318|consen 86 WDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDS-GNSVGEITGHSRRINSVDFKPSRPFRIA 164 (603)
T ss_pred EeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEecC-CCccceeeccceeEeeeeccCCCceEEE
Confidence 997652 2 22 444467889999999999999988652 35666642 2222222222111
Q ss_pred ---CCceec---cC------ccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeec---CCCCc
Q 000731 160 ---EGFDVH---EP------ELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSE---LKAFM 224 (1325)
Q Consensus 160 ---~~~~Vs---~t------qf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e---~~~~~ 224 (1325)
+...|. -+ .|+.|...|.++.|+|||.+|||++ .|++|.+||-.+|+....++ +|.|.
T Consensus 165 T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~g-------sDgki~iyDGktge~vg~l~~~~aHkGs 237 (603)
T KOG0318|consen 165 TGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAG-------SDGKIYIYDGKTGEKVGELEDSDAHKGS 237 (603)
T ss_pred eccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEec-------CCccEEEEcCCCccEEEEecCCCCcccc
Confidence 111111 11 1226788899999999999999554 36999999998999988877 89999
Q ss_pred eeEEEEccCCCeEEEEecCCCCCCCCeEEEEeCCCc-eEEEEE---------------------e---------c-----
Q 000731 225 GAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGL-ERSSFD---------------------I---------N----- 268 (1325)
Q Consensus 225 v~~lawsPdG~~IAs~~~d~~~~~~~~V~~~e~nGl-~~~~f~---------------------l---------~----- 268 (1325)
+.+|+||||+..+++++.|+ ++++||.+-. ...+|. + .
T Consensus 238 IfalsWsPDs~~~~T~SaDk------t~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~ 311 (603)
T KOG0318|consen 238 IFALSWSPDSTQFLTVSADK------TIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPS 311 (603)
T ss_pred EEEEEECCCCceEEEecCCc------eEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCC
Confidence 99999999999999999975 4888874321 111111 0 0
Q ss_pred -----cCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeEEE---------eEEEEec-CCcEEEEEccCCCc
Q 000731 269 -----EQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLK---------YEIRYLR-RDGIRFMWHPTKPL 333 (1325)
Q Consensus 269 -----~~~~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~n~~wylk---------qel~~~~-~~~~~v~Wsp~~~~ 333 (1325)
..|...|.+|+-|||++.|-+++.|+ .|.=|+.+..+--.. ..+.... .+...+.|+..
T Consensus 312 ~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG---~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~--- 385 (603)
T KOG0318|consen 312 VLKVISGHNKSITALTVSPDGKTIYSGSYDG---HINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDT--- 385 (603)
T ss_pred hhheecccccceeEEEEcCCCCEEEeeccCc---eEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCe---
Confidence 01234699999999999999999999 999999876543211 1111111 11255666631
Q ss_pred EEEEEec-CCcEEEEEEEEeee-------eC-C-CeeEEEEeCCEEEEeecCCcCCCCCceeeeecCCCCEEEEEEecCC
Q 000731 334 QLICWTL-DGQITTYNFIWTTA-------VM-E-NSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKS 403 (1325)
Q Consensus 334 ~L~~~~~-~g~~~~~~~~~~~~-------~~-d-~~~v~viDG~~l~lt~l~~~~vPpPm~~~~l~~~~~V~~VaFSpdg 403 (1325)
|.+... ++.+.. ..+.... +. + ...+++.+...+.+.++..-. ++...=.+.+||++|++
T Consensus 386 -l~~~~~~~~~~t~-~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~--------~~~~~y~~s~vAv~~~~ 455 (603)
T KOG0318|consen 386 -LRVISLKDNGYTK-SEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVS--------SIPIGYESSAVAVSPDG 455 (603)
T ss_pred -EEEEecccCcccc-cceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcce--------eeccccccceEEEcCCC
Confidence 222221 111111 1111111 11 1 122333344444444444321 11122245789999999
Q ss_pred CCCEEEEEECCCcEEEEeCCCCCccccccCCceeEeeeccccccCcEEEEEEecCCeEEEEEecCCCCceEEEEeecccC
Q 000731 404 SKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGATLNED 483 (1325)
Q Consensus 404 ~~~~LAs~s~Dgti~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~~~~~~~~~~~~~~~~ 483 (1325)
+.+|+++.||.|++|.+.+....++.. ...+...+..++||||+.+||++- .+..+++|.+.-..
T Consensus 456 --~~vaVGG~Dgkvhvysl~g~~l~ee~~----------~~~h~a~iT~vaySpd~~yla~~D--a~rkvv~yd~~s~~- 520 (603)
T KOG0318|consen 456 --SEVAVGGQDGKVHVYSLSGDELKEEAK----------LLEHRAAITDVAYSPDGAYLAAGD--ASRKVVLYDVASRE- 520 (603)
T ss_pred --CEEEEecccceEEEEEecCCcccceee----------eecccCCceEEEECCCCcEEEEec--cCCcEEEEEcccCc-
Confidence 899999999999999997643221100 013556899999999999999753 34677888763100
Q ss_pred ccccchhhhhhhhcccccccccccccccceeeeeecccCCcEEEEeeCCCCCceEEEEeeCCeEEEEec
Q 000731 484 GLLGFYAQEIELACSEDHVQGLLTCAGWHAKVSTQIPLEGLVIAIAPNNAKKYSAFLQFHGGKISEYMS 552 (1325)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~q~~dG~v~~~~~ 552 (1325)
..-..-.-+.++|..++++| ++..++--.-|-.|+.|+.
T Consensus 521 -----------------------------~~~~~w~FHtakI~~~aWsP-~n~~vATGSlDt~Viiysv 559 (603)
T KOG0318|consen 521 -----------------------------VKTNRWAFHTAKINCVAWSP-NNKLVATGSLDTNVIIYSV 559 (603)
T ss_pred -----------------------------eecceeeeeeeeEEEEEeCC-CceEEEeccccceEEEEEc
Confidence 01111122567899999999 8888888888999999964
No 10
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.95 E-value=1.1e-25 Score=254.30 Aligned_cols=338 Identities=15% Similarity=0.190 Sum_probs=231.8
Q ss_pred ceeEEeeecCCCEEEE-EeCCCcEEEEecccccccccceeeccc--cccccccCCCCCCEEEEEEccCCCEEEEEECCCc
Q 000731 22 ILQFSALDIEQNRLFF-ASSANNIYSAQLSSFQNERASIKTAIS--AEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGL 98 (1325)
Q Consensus 22 ~~~~~~~d~~~~~l~~-~s~~~~i~~~~~~~~~~~~~~~~~~l~--~~l~~~~~~~~~~V~~v~~spdg~~La~as~dG~ 98 (1325)
.+.+++|+|..+.+|. ++.+.....|++.+...... +...|. -...+........|++++|+-||..||+|+.||.
T Consensus 180 ~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~-~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~~G~ 258 (524)
T KOG0273|consen 180 EVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGS-TQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSEDGE 258 (524)
T ss_pred ceEEEecCchhhhhhhccCCccceeeeeehhhccccc-hhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEeecCcE
Confidence 5788999999995554 56688888898842111100 000000 0001111112467999999999999999999999
Q ss_pred EEEEeCCCCeEEEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeeeccccCCCceeccCccccCCCCeEE
Q 000731 99 LLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSP 178 (1325)
Q Consensus 99 I~lw~~~~~~~e~vg~~~~~I~~~awSPDG~~LA~~s~dgtV~l~s~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~ 178 (1325)
+++|+.++..+..++.|.++|.++.|+-+|.+|++++-|+|+++|+. +++..-.. |.-|......
T Consensus 259 ~riw~~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~----~~g~~~q~-----------f~~~s~~~lD 323 (524)
T KOG0273|consen 259 ARIWNKDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDA----HTGTVKQQ-----------FEFHSAPALD 323 (524)
T ss_pred EEEEecCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEec----cCceEEEe-----------eeeccCCccc
Confidence 99999999999999999999999999999999999999999999753 23222111 1122233367
Q ss_pred EEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeecCCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeCC
Q 000731 179 ISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERN 258 (1325)
Q Consensus 179 isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~~~v~~lawsPdG~~IAs~~~d~~~~~~~~V~~~e~n 258 (1325)
|-|..+.. || +++. ++.|+|+-...-....++.+|.+.|.+|-|.|.|.+|||+++| .++++|.+.
T Consensus 324 VdW~~~~~-F~-ts~t------d~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD------~TlkiWs~~ 389 (524)
T KOG0273|consen 324 VDWQSNDE-FA-TSST------DGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDD------GTLKIWSMG 389 (524)
T ss_pred eEEecCce-Ee-ecCC------CceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCC------CeeEeeecC
Confidence 99998886 56 3432 5899999996667888999999999999999999999999997 569999843
Q ss_pred -CceEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeEEEeEEEEecCCcEEEEEccCCCcEEEE
Q 000731 259 -GLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLIC 337 (1325)
Q Consensus 259 -Gl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~n~~wylkqel~~~~~~~~~v~Wsp~~~~~L~~ 337 (1325)
+.--. .+..+ ...|..+.|||+|.. .|+|.....+..
T Consensus 390 ~~~~~~--~l~~H-skei~t~~wsp~g~v---------------------------------------~~n~~~~~~l~s 427 (524)
T KOG0273|consen 390 QSNSVH--DLQAH-SKEIYTIKWSPTGPV---------------------------------------TSNPNMNLMLAS 427 (524)
T ss_pred CCcchh--hhhhh-ccceeeEeecCCCCc---------------------------------------cCCCcCCceEEE
Confidence 21111 12222 456888999987631 111111111111
Q ss_pred EecCCcEEEEEEEEeeeeCCCeeEEEEeCCEEEEeecCCcCCCCCceeeee-cCCCCEEEEEEecCCCCCEEEEEECCCc
Q 000731 338 WTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSL-KFPTAVTEMAFYSKSSKNCLAAILSDGC 416 (1325)
Q Consensus 338 ~~~~g~~~~~~~~~~~~~~d~~~v~viDG~~l~lt~l~~~~vPpPm~~~~l-~~~~~V~~VaFSpdg~~~~LAs~s~Dgt 416 (1325)
.. -.++|++|+... +.+.+++ .|..+|.+|+|||+| .++|+++-||.
T Consensus 428 as-------------------------~dstV~lwdv~~-----gv~i~~f~kH~~pVysvafS~~g--~ylAsGs~dg~ 475 (524)
T KOG0273|consen 428 AS-------------------------FDSTVKLWDVES-----GVPIHTLMKHQEPVYSVAFSPNG--RYLASGSLDGC 475 (524)
T ss_pred ee-------------------------cCCeEEEEEccC-----CceeEeeccCCCceEEEEecCCC--cEEEecCCCCe
Confidence 11 112333333211 2223345 688999999999999 99999999999
Q ss_pred EEEEeCCCCCccccccCCceeEeeeccccccCcEEEEEEecCCeEEEEEecCCCCceEEEEe
Q 000731 417 LCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGA 478 (1325)
Q Consensus 417 i~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~~~~~~~~~~~ 478 (1325)
|++|+..+....+...| .+.|..++|+-+|..|+++..+ ..+++..+
T Consensus 476 V~iws~~~~~l~~s~~~-------------~~~Ifel~Wn~~G~kl~~~~sd--~~vcvldl 522 (524)
T KOG0273|consen 476 VHIWSTKTGKLVKSYQG-------------TGGIFELCWNAAGDKLGACASD--GSVCVLDL 522 (524)
T ss_pred eEeccccchheeEeecC-------------CCeEEEEEEcCCCCEEEEEecC--CCceEEEe
Confidence 99999986544433333 2468899999999887766544 45555544
No 11
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=1.5e-26 Score=258.63 Aligned_cols=263 Identities=14% Similarity=0.111 Sum_probs=216.0
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccC--CCEEEEEECCCcE
Q 000731 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLME--KEALIVGTSSGLL 99 (1325)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~V~~v~~spd--g~~La~as~dG~I 99 (1325)
++....|..+++.|.++|=++....|+. .+.+. +.+ |.+| .+.|.++.|+|. +..||+++.||+|
T Consensus 177 Pis~~~fS~ds~~laT~swsG~~kvW~~--~~~~~---~~~----l~gH----~~~v~~~~fhP~~~~~~lat~s~Dgtv 243 (459)
T KOG0272|consen 177 PISGCSFSRDSKHLATGSWSGLVKVWSV--PQCNL---LQT----LRGH----TSRVGAAVFHPVDSDLNLATASADGTV 243 (459)
T ss_pred cceeeEeecCCCeEEEeecCCceeEeec--CCcce---eEE----Eecc----ccceeeEEEccCCCccceeeeccCCce
Confidence 6788889999999999999999999998 44432 333 6677 468999999998 6799999999999
Q ss_pred EEEeCCCC-eEE-EeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeeeccccCCCceeccCccccCCCCeE
Q 000731 100 LLHSVDGN-ATE-VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKS 177 (1325)
Q Consensus 100 ~lw~~~~~-~~e-~vg~~~~~I~~~awSPDG~~LA~~s~dgtV~l~s~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~ 177 (1325)
+||+.++. .+. +.| |...|..++|.|+|++|++++-|.+-.+ ||.-+...+.... ||+.+|.
T Consensus 244 klw~~~~e~~l~~l~g-H~~RVs~VafHPsG~~L~TasfD~tWRl----WD~~tk~ElL~QE-----------GHs~~v~ 307 (459)
T KOG0272|consen 244 KLWKLSQETPLQDLEG-HLARVSRVAFHPSGKFLGTASFDSTWRL----WDLETKSELLLQE-----------GHSKGVF 307 (459)
T ss_pred eeeccCCCcchhhhhc-chhhheeeeecCCCceeeecccccchhh----cccccchhhHhhc-----------ccccccc
Confidence 99999884 333 445 5789999999999999999999998755 6666655554444 7778889
Q ss_pred EEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeecCCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeC
Q 000731 178 PISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYER 257 (1325)
Q Consensus 178 ~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~~~v~~lawsPdG~~IAs~~~d~~~~~~~~V~~~e~ 257 (1325)
+|+|.|||..++ +++. |..-||||.++|.++-.+++|...|.+|+|||+|-.||+|+.| +++++|+.
T Consensus 308 ~iaf~~DGSL~~-tGGl------D~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~D------nt~kVWDL 374 (459)
T KOG0272|consen 308 SIAFQPDGSLAA-TGGL------DSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSD------NTCKVWDL 374 (459)
T ss_pred eeEecCCCceee-ccCc------cchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCC------CcEEEeee
Confidence 999999999888 6654 5788999999999999999999999999999999999999986 56999996
Q ss_pred CCceEEEEEeccCCCCcEEEEEEcc-CCCeeEEEEccCCCCeEEEEEeeCCeeEEEeEEEEecCCcEEEEEccCCCc
Q 000731 258 NGLERSSFDINEQIDSTVELLKWNC-MSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPL 333 (1325)
Q Consensus 258 nGl~~~~f~l~~~~~~~V~~laWSp-Dg~~LAs~~~d~~~~~VqLW~~~n~~wylkqel~~~~~~~~~v~Wsp~~~~ 333 (1325)
-+.+. -++++.| .+-|..|.|+| -|.+|++++.|. +++||...+ |.+-+.+.+|...+.++.-+|++..
T Consensus 375 R~r~~-ly~ipAH-~nlVS~Vk~~p~~g~fL~TasyD~---t~kiWs~~~--~~~~ksLaGHe~kV~s~Dis~d~~~ 444 (459)
T KOG0272|consen 375 RMRSE-LYTIPAH-SNLVSQVKYSPQEGYFLVTASYDN---TVKIWSTRT--WSPLKSLAGHEGKVISLDISPDSQA 444 (459)
T ss_pred ccccc-ceecccc-cchhhheEecccCCeEEEEcccCc---ceeeecCCC--cccchhhcCCccceEEEEeccCCce
Confidence 54322 3456654 56799999999 789999999999 999999877 5566778877666677777777653
No 12
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.94 E-value=9.3e-24 Score=249.18 Aligned_cols=388 Identities=14% Similarity=0.125 Sum_probs=274.7
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccc---------------------cceeeccccc-cccccCCC-CCCE
Q 000731 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNER---------------------ASIKTAISAE-IEHIDLEP-GDSI 78 (1325)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~---------------------~~~~~~l~~~-l~~~~~~~-~~~V 78 (1325)
.+.+.-|-.++..+|++|.|+.|+.|..+ .... +-++.+.--. .+-+.+.. +..|
T Consensus 191 ~VvacfF~~~~~~l~tvskdG~l~~W~~~--~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kv 268 (893)
T KOG0291|consen 191 YVVACFFGANSLDLYTVSKDGALFVWTCD--LRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKV 268 (893)
T ss_pred ceEEEEeccCcceEEEEecCceEEEEEec--CCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccce
Confidence 78888899999999999999999999873 1100 0000000000 11122221 3789
Q ss_pred EEEEEccCCCEEEEEECCCcEEEEeCCCCeE-EEeceecCcEEEEEEcCCCCeEEEEeCC-ccEEEEeecCceeeeeecc
Q 000731 79 TAFDYLMEKEALIVGTSSGLLLLHSVDGNAT-EVVGRVEGGVRFISPSPDGDLLGVTTGF-GQILVMTHDWDLLYENPLE 156 (1325)
Q Consensus 79 ~~v~~spdg~~La~as~dG~I~lw~~~~~~~-e~vg~~~~~I~~~awSPDG~~LA~~s~d-gtV~l~s~~~d~~~e~~l~ 156 (1325)
++.+|++....||+|.++|.+.||.+.+-.+ ....--+..|..++|+--|++||.++.. |++.+|. | .+|.-+-
T Consensus 269 taa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVwe--W--qsEsYVl 344 (893)
T KOG0291|consen 269 TAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWE--W--QSESYVL 344 (893)
T ss_pred eeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEE--e--eccceee
Confidence 9999999999999999999999999887433 3333225789999999999999999764 7888874 3 2333221
Q ss_pred ccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeecCCCCceeEEEEccCCCe
Q 000731 157 ELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGAN 236 (1325)
Q Consensus 157 ~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~~~v~~lawsPdG~~ 236 (1325)
.. ++|.+.+.++++||||+++| .++ .|++|||||...|-|..|+..|...+..+.|+-.|+.
T Consensus 345 KQ-----------QgH~~~i~~l~YSpDgq~ia-TG~------eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~ 406 (893)
T KOG0291|consen 345 KQ-----------QGHSDRITSLAYSPDGQLIA-TGA------EDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNV 406 (893)
T ss_pred ec-----------cccccceeeEEECCCCcEEE-ecc------CCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCE
Confidence 11 26778999999999999999 553 4799999999999999999999999999999999999
Q ss_pred EEEEecCCCCCCCCeEEEEeCC-CceEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeEEEeEE
Q 000731 237 IAAVYDRKSENKCPSIVFYERN-GLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEI 315 (1325)
Q Consensus 237 IAs~~~d~~~~~~~~V~~~e~n-Gl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~n~~wylkqel 315 (1325)
+.|++-| ++|+.||.. +.--+.|+.|.+ ..-.+|+-.|.|+++..|+.|. --|.+|++++++ |...+
T Consensus 407 llssSLD------GtVRAwDlkRYrNfRTft~P~p--~QfscvavD~sGelV~AG~~d~--F~IfvWS~qTGq--llDiL 474 (893)
T KOG0291|consen 407 LLSSSLD------GTVRAWDLKRYRNFRTFTSPEP--IQFSCVAVDPSGELVCAGAQDS--FEIFVWSVQTGQ--LLDIL 474 (893)
T ss_pred EEEeecC------CeEEeeeecccceeeeecCCCc--eeeeEEEEcCCCCEEEeeccce--EEEEEEEeecCe--eeehh
Confidence 9999986 579999943 333345555433 3466788888899999988775 259999999986 45556
Q ss_pred EEecCCcEEEEEccCCCcEEEEEecCCcEEEEEEEEeeeeCCCeeEEEEeCCEEEEeecCCcCCCCCceeeeecCCCCEE
Q 000731 316 RYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVT 395 (1325)
Q Consensus 316 ~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDG~~l~lt~l~~~~vPpPm~~~~l~~~~~V~ 395 (1325)
.+|......++|+|++.. |+.++.|.++ ++|++-... -...++++.+-|.
T Consensus 475 sGHEgPVs~l~f~~~~~~-LaS~SWDkTV-------------------------RiW~if~s~----~~vEtl~i~sdvl 524 (893)
T KOG0291|consen 475 SGHEGPVSGLSFSPDGSL-LASGSWDKTV-------------------------RIWDIFSSS----GTVETLEIRSDVL 524 (893)
T ss_pred cCCCCcceeeEEccccCe-EEeccccceE-------------------------EEEEeeccC----ceeeeEeecccee
Confidence 665444477889998873 6655544433 333321110 0123566788899
Q ss_pred EEEEecCCCCCEEEEEECCCcEEEEeCCCCCccccccCC------ceeEeeeccc--cccCcEEEEEEecCCeEEEEEec
Q 000731 396 EMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGT------EFVVEACISE--TAFGSVIHLIWLGSHLLLSVSHH 467 (1325)
Q Consensus 396 ~VaFSpdg~~~~LAs~s~Dgti~lw~~~~~~~~~~~~g~------~~~~~~~~~~--~~~~~v~~l~~~~d~~lla~~~~ 467 (1325)
+|+|+||| ..||+++-||.|.+|+...........|. ......-..+ .....+..|++++||..+.++
T Consensus 525 ~vsfrPdG--~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAg-- 600 (893)
T KOG0291|consen 525 AVSFRPDG--KELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAG-- 600 (893)
T ss_pred EEEEcCCC--CeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEec--
Confidence 99999999 99999999999999998653333222221 1110000001 112378999999999977654
Q ss_pred CCCCceEEEEee
Q 000731 468 GPRHSNYFRGAT 479 (1325)
Q Consensus 468 ~~~~~~~~~~~~ 479 (1325)
+.++.+|++.+.
T Consensus 601 G~sn~iCiY~v~ 612 (893)
T KOG0291|consen 601 GESNSICIYDVP 612 (893)
T ss_pred CCcccEEEEECc
Confidence 455889999864
No 13
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=7.9e-25 Score=233.42 Aligned_cols=280 Identities=16% Similarity=0.204 Sum_probs=206.4
Q ss_pred eceecCcEEEEEEcCC-CCeEEEEeCCccEEEEeec-CceeeeeeccccCCCceeccCccccCCCCeEEEEEecCCcEEE
Q 000731 112 VGRVEGGVRFISPSPD-GDLLGVTTGFGQILVMTHD-WDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFA 189 (1325)
Q Consensus 112 vg~~~~~I~~~awSPD-G~~LA~~s~dgtV~l~s~~-~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lA 189 (1325)
+..|.+.|+.++|+|- |.+||++++|+.|++|+.. .+.......-. + +|.-.|.+|+|||.|+|||
T Consensus 10 ~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld-~-----------~hkrsVRsvAwsp~g~~La 77 (312)
T KOG0645|consen 10 LSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLD-D-----------GHKRSVRSVAWSPHGRYLA 77 (312)
T ss_pred ecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEecc-c-----------cchheeeeeeecCCCcEEE
Confidence 3446788999999999 9999999999999999754 33322222111 1 3455679999999999999
Q ss_pred EeeccccccCCCCEEEEEECCCC--ceeeeecCCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeCCCceEEEEEe
Q 000731 190 TLSEFCNSSKLHKRLKVWERDSG--TLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDI 267 (1325)
Q Consensus 190 tvss~d~~~~~d~~irVWd~~~G--~l~~t~e~~~~~v~~lawsPdG~~IAs~~~d~~~~~~~~V~~~e~nGl~~~~f~l 267 (1325)
++|. |.++-||...+| ++..++|+|..-|.+++||++|++||++++|+ .|-+||..+ ..+|..
T Consensus 78 -~aSF------D~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDK------SVWiWe~de--ddEfec 142 (312)
T KOG0645|consen 78 -SASF------DATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDK------SVWIWEIDE--DDEFEC 142 (312)
T ss_pred -Eeec------cceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCC------eEEEEEecC--CCcEEE
Confidence 7766 479999987655 57888999999999999999999999999975 599999763 234432
Q ss_pred c---cCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEee-CCeeEEEeEEEEecCCcEEEEEccCCCcEEEEEecCCc
Q 000731 268 N---EQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFS-NNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQ 343 (1325)
Q Consensus 268 ~---~~~~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~-n~~wylkqel~~~~~~~~~v~Wsp~~~~~L~~~~~~g~ 343 (1325)
- .+|...|..+.|.|.-.+|+++++|. +|++|... ...|-+.|.|..+.....++.|+|.+. +|...+.++.
T Consensus 143 ~aVL~~HtqDVK~V~WHPt~dlL~S~SYDn---TIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~-rl~s~sdD~t 218 (312)
T KOG0645|consen 143 IAVLQEHTQDVKHVIWHPTEDLLFSCSYDN---TIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGS-RLVSCSDDGT 218 (312)
T ss_pred EeeeccccccccEEEEcCCcceeEEeccCC---eEEEEeecCCCCeeEEEEecCccceEEEEEecCCCc-eEEEecCCcc
Confidence 2 34566799999999999999999999 99999988 788999999988765558999999884 4778888888
Q ss_pred EEEEEEE-----------EeeeeCCCeeEEEEeCCEEEEeecCCcCCCCCce---eeeecCCCCEEEEEEecCCCCCEEE
Q 000731 344 ITTYNFI-----------WTTAVMENSTALVIDGSKILVTPLSLSLMPPPMY---LFSLKFPTAVTEMAFYSKSSKNCLA 409 (1325)
Q Consensus 344 ~~~~~~~-----------~~~~~~d~~~v~viDG~~l~lt~l~~~~vPpPm~---~~~l~~~~~V~~VaFSpdg~~~~LA 409 (1325)
+.++... +++...+..++.+..+..+.+..-...+..|-.. .....|...|++|.|.|.+ +++|+
T Consensus 219 v~Iw~~~~~~~~~~sr~~Y~v~W~~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~-~~~L~ 297 (312)
T KOG0645|consen 219 VSIWRLYTDLSGMHSRALYDVPWDNGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKV-SNRLA 297 (312)
T ss_pred eEeeeeccCcchhcccceEeeeecccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCC-CCcee
Confidence 7654311 1121222223333334455554433322222211 1122377789999999953 28999
Q ss_pred EEECCCcEEEEeCC
Q 000731 410 AILSDGCLCVVDLP 423 (1325)
Q Consensus 410 s~s~Dgti~lw~~~ 423 (1325)
+++.||.|++|.+.
T Consensus 298 s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 298 SGGDDGIVNFWELE 311 (312)
T ss_pred ecCCCceEEEEEec
Confidence 99999999999874
No 14
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.94 E-value=1.2e-23 Score=243.47 Aligned_cols=781 Identities=15% Similarity=0.166 Sum_probs=441.9
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEE
Q 000731 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1325)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~V~~v~~spdg~~La~as~dG~I~l 101 (1325)
.+..+||-||+..|..+.++. ++.+|.| -+.. .+ + |++| .+.|.+|+|+.||+.+|+|++|..|++
T Consensus 14 ci~d~afkPDGsqL~lAAg~r-lliyD~n--dG~l-lq--t----LKgH----KDtVycVAys~dGkrFASG~aDK~VI~ 79 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGSR-LLVYDTS--DGTL-LQ--P----LKGH----KDTVYCVAYAKDGKRFASGSADKSVII 79 (1081)
T ss_pred chheeEECCCCceEEEecCCE-EEEEeCC--Cccc-cc--c----cccc----cceEEEEEEccCCceeccCCCceeEEE
Confidence 567799999999999988887 8899984 2221 12 2 5666 468999999999999999999999999
Q ss_pred EeCCC-CeEEEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeeeccccCCCceeccCccccCCCCeEEEE
Q 000731 102 HSVDG-NATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPIS 180 (1325)
Q Consensus 102 w~~~~-~~~e~vg~~~~~I~~~awSPDG~~LA~~s~dgtV~l~s~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~is 180 (1325)
|+..- |.+.- +|.+.|.||+|+|=...||+++-. ..-+|+.+-..+... -...++.+.+
T Consensus 80 W~~klEG~LkY--SH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V~K~-----------------kss~R~~~Cs 139 (1081)
T KOG1538|consen 80 WTSKLEGILKY--SHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKSVSKH-----------------KSSSRIICCS 139 (1081)
T ss_pred ecccccceeee--ccCCeeeEeecCchHHHhhhcchh-hccccChhhhhHHhh-----------------hhheeEEEee
Confidence 99753 22322 468899999999999999999754 244554321111110 0114678999
Q ss_pred EecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeec---CCCCceeEEEEccCC-----CeEEEEecCCCCCCCCeE
Q 000731 181 WRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSE---LKAFMGAVLEWMPSG-----ANIAAVYDRKSENKCPSI 252 (1325)
Q Consensus 181 WspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e---~~~~~v~~lawsPdG-----~~IAs~~~d~~~~~~~~V 252 (1325)
|..||+||| .+ .++++|-|.|. +|+..-.-+ +.+..+++|+|+|+. ..||+.... .++
T Consensus 140 WtnDGqyla-lG------~~nGTIsiRNk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~------qTL 205 (1081)
T KOG1538|consen 140 WTNDGQYLA-LG------MFNGTISIRNK-NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWG------QTL 205 (1081)
T ss_pred ecCCCcEEE-Ee------ccCceEEeecC-CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEecc------cee
Confidence 999999999 87 35689999998 776544333 356679999999974 367777663 568
Q ss_pred EEEeCCCceEE-EEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeEEEeEEEEecCCc--EEEEEcc
Q 000731 253 VFYERNGLERS-SFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDG--IRFMWHP 329 (1325)
Q Consensus 253 ~~~e~nGl~~~-~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~n~~wylkqel~~~~~~~--~~v~Wsp 329 (1325)
.|+...|...+ +-+| +..-..|++-|+|+++.+|+.|+ .+++++...-. -.++. +.+. ++|.-+|
T Consensus 206 SFy~LsG~~Igk~r~L----~FdP~CisYf~NGEy~LiGGsdk---~L~~fTR~Gvr---LGTvg--~~D~WIWtV~~~P 273 (1081)
T KOG1538|consen 206 SFYQLSGKQIGKDRAL----NFDPCCISYFTNGEYILLGGSDK---QLSLFTRDGVR---LGTVG--EQDSWIWTVQAKP 273 (1081)
T ss_pred EEEEecceeecccccC----CCCchhheeccCCcEEEEccCCC---ceEEEeecCeE---Eeecc--ccceeEEEEEEcc
Confidence 88988886655 2122 12345788999999999999998 78888876521 11211 1122 6677788
Q ss_pred CCCcEEEEEecCCcEEEEEEEEeeee--------CCCeeEEE-----EeCCEEEEeecCCcCCCCCceeeeecCCCCEEE
Q 000731 330 TKPLQLICWTLDGQITTYNFIWTTAV--------MENSTALV-----IDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTE 396 (1325)
Q Consensus 330 ~~~~~L~~~~~~g~~~~~~~~~~~~~--------~d~~~v~v-----iDG~~l~lt~l~~~~vPpPm~~~~l~~~~~V~~ 396 (1325)
.+. ...++++||++..++.++++-. .-.++.-| +-+..+. +...+-|..
T Consensus 274 NsQ-~v~~GCqDGTiACyNl~fSTVH~ly~~RYA~R~sMtDVivQhLi~~qkvr-----------------IkC~DLVkK 335 (1081)
T KOG1538|consen 274 NSQ-YVVVGCQDGTIACYNLIFSTVHGLYKDRYAYRDSMTDVIVQHLITEQKVR-----------------IKCKDLVKK 335 (1081)
T ss_pred CCc-eEEEEEccCeeehhhhHHhHhhhhhHHhhhhhhhhHHHHHHHHhhcceee-----------------eeHHHHHHH
Confidence 765 4889999999998888877540 00011000 1111111 111222333
Q ss_pred EEEecCCCCCEEEEEECCCcEEEEeCCCCCccccccCCceeEeeeccccccCcEEEEEEecCCeEEEEEecCCCCceEEE
Q 000731 397 MAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFR 476 (1325)
Q Consensus 397 VaFSpdg~~~~LAs~s~Dgti~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~~~~~~~~~ 476 (1325)
++... +.||+-..+ .|.+|.+...... .-.+++...+ ...+.| .++++.+. .+++.
T Consensus 336 iaiYr----nrLAVQLpe-ki~iYel~se~~~----~mhY~v~ekI-------~kkf~c----SLlVVc~~----HiVlC 391 (1081)
T KOG1538|consen 336 IAIYR----NRLAVQLPE-KILIYELYSEDLS----DMHYRVKEKI-------IKKFEC----SLLVVCAN----HIVLC 391 (1081)
T ss_pred HHhhh----hhheecccc-eEEEEeccccccc----cchhHHHHHH-------Hhhccc----eEEEEEcC----eEEEE
Confidence 44432 468888777 6788887642211 0001000000 001111 12333221 22222
Q ss_pred ------EeecccCccccchhhhhhhhcccccccccccccccceeeeeecccCCcEEEEeeCCCCCceEEEEeeCCeEEEE
Q 000731 477 ------GATLNEDGLLGFYAQEIELACSEDHVQGLLTCAGWHAKVSTQIPLEGLVIAIAPNNAKKYSAFLQFHGGKISEY 550 (1325)
Q Consensus 477 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~q~~dG~v~~~ 550 (1325)
-+++.| ...+| |+.. +.+. -+.|.-.|+..+++.+-+.||.|++.
T Consensus 392 qekrLqClDF~G-----vk~Re------------------W~M~--S~iR----YikV~GGP~gREgL~vGlknGqV~ki 442 (1081)
T KOG1538|consen 392 QEKRLQCLDFSG-----VKERE------------------WQME--SLIR----YIKVIGGPPGREGLLVGLKNGQVLKI 442 (1081)
T ss_pred cccceeeecccc-----hhhhh------------------hhHH--HHHH----hhhhhcCCCCcceeEEEecCCcEEEE
Confidence 122222 11112 1110 0000 01112234356889999999999987
Q ss_pred eccccccCCCCCCCCCCCCCCCCceeEEEecCCCCCcceEEEEcCCCceee----CCEeee--cCceeEEE---eccCcc
Q 000731 551 MSRVGLTGGALTHDDASFPSSCPWMNVVSVGTNGPLKPLLFGLDDGGRLHV----SGKIVC--NNCSSFSF---YSKSAG 621 (1325)
Q Consensus 551 ~~~~~~~~~~~~~~~~~fp~~c~~~~~~~~~~~~~~~~~~~gL~~~~~L~~----~~~~~~--~~~tSf~~---~~~~~~ 621 (1325)
-.+..+ ++-+...-.-+....|+.+ ...+--..+++++-+ ++.++- .+|.|.+. .++
T Consensus 443 F~dN~~--------PiLl~~~~tAvrClDINA~---R~kLAvVDD~~~c~v~DI~t~elL~QEpg~nSV~wNT~~E~--- 508 (1081)
T KOG1538|consen 443 FVDNLF--------PILLLKQATAVRCLDINAS---RKKLAVVDDNDTCLVYDIDTKELLFQEPGANSVAWNTQCED--- 508 (1081)
T ss_pred EecCCc--------hhheecccceeEEeeccCC---cceEEEEccCCeEEEEEccCCceEeecCCCceEEeeccccc---
Confidence 433211 1111111111111222211 223344455555543 233332 56777653 344
Q ss_pred ccceEEEEEecCCeEEEEEcCccccccccccccccccccCccccccccccccccCCC-EEEEEeCCCCcEEEEEeCCCce
Q 000731 622 QAMSHLILATKQNLLFIVDISDILHGELALKYENFTHVGNRRKEENISYINIWERGA-KVIGVLHGDEAAVILQTNRGNL 700 (1325)
Q Consensus 622 ~~~~~Ll~TT~~h~l~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~de~~R~vErGs-~iV~~~p~~~~~vVLQmpRGNL 700 (1325)
.|.||+. +-|..=-+. +++ |. .+|- -+|+..-+. +-+. |||.
T Consensus 509 ----MlcfT~~-g~L~VR~~~------~P~--------------------h~-qk~~G~VvG~~gsk-~FCL----~~~~ 551 (1081)
T KOG1538|consen 509 ----MLCFTGG-GYLNVRAST------FPV--------------------HR-QKLQGFVVGYNGSK-IFCL----HVFS 551 (1081)
T ss_pred ----eEEEecC-CceEEEecc------CCc--------------------ch-hcceEEEEEecCce-EEEE----Eeee
Confidence 6777665 343321111 000 11 2221 122222222 2222 1221
Q ss_pred eeccchhhhHHHHHHHHhcccHHHHHHHHhhcccccceEEecccHHHHHHhHHHHHhhcCCcchhhHHHhhccCCccccc
Q 000731 701 ECMYPRKLVLTSIVNALIQGRFRDALVMVRRHRINFNVIVDHCGWQAFLQSASEFVRQVNNLSYITEFVCAINNENITET 780 (1325)
Q Consensus 701 EtI~PR~lvL~~i~~~l~~~~y~~Af~~~R~hRIdlNll~D~~~p~~Fl~~~~~Fv~qv~~~~~l~lFls~L~~edvt~t 780 (1325)
-.--|.+++- ..-++|.++.|++| .||-===+++-| |+-.-..+=+ .|. -|+...
T Consensus 552 i~~~evp~~~-~m~q~Ieag~f~ea------~~iaclgVv~~D-W~~LA~~ALe----------------AL~-f~~ARk 606 (1081)
T KOG1538|consen 552 ISAVEVPQSA-PMYQYIERGLFKEA------YQIACLGVTDTD-WRELAMEALE----------------ALD-FETARK 606 (1081)
T ss_pred eecccccccc-cchhhhhccchhhh------hcccccceecch-HHHHHHHHHh----------------hhh-hHHHHH
Confidence 1112233332 46688999999999 555444455666 6443221110 000 011111
Q ss_pred cccccccccCCccccccCCCcccccccCCCchHHHHHHHHHHHh---hcCCCCCCchhHhhhHhhcCCChhHHHHHHHHH
Q 000731 781 LYKKFQFLSLPCREEFKDLPAKDFKASECNKVSSVLLAIRKALE---EKVPESPSRELCILTTLARSDPPALEEALERIK 857 (1325)
Q Consensus 781 ~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~KV~~iC~a~~~~l~---~~~~~~~~~~~~ilT~~~~~~pp~le~aL~~i~ 857 (1325)
-|..- .+ - +-.. +...|+ +....+...++.-+-||.+| +.+|-++.+
T Consensus 607 AY~rV-----Rd-----------------l---~~L~-li~EL~~~k~rge~P~~iLlA~~~Ay~gK----F~EAAklFk 656 (1081)
T KOG1538|consen 607 AYIRV-----RD-----------------L---RYLE-LISELEERKKRGETPNDLLLADVFAYQGK----FHEAAKLFK 656 (1081)
T ss_pred HHHHH-----hc-----------------c---HHHH-HHHHHHHHHhcCCCchHHHHHHHHHhhhh----HHHHHHHHH
Confidence 11100 00 0 0000 111111 11011222222222233222 334433321
Q ss_pred HHHhhcccCCCCCCCCChhhHHHHHHHHHhhccHHHHHHHHHhccC----hhHHHHHHHHhcCCcccchHhHHHHhcCCc
Q 000731 858 IIRETELLGSDEPRRMSYPSAEEALKHLLWLADSEAVYEAALGLYD----LNLAAIVALNSQRDPKEFLPYLQELESMPP 933 (1325)
Q Consensus 858 ~l~~~~~~~~~~~~~~~~~~ae~alkyl~~L~d~n~Ly~~ALg~YD----~~lal~VAq~sqkDPkeYLpfL~~L~~l~~ 933 (1325)
+. |. -+.||+||- |++|..+-. -.+|+|=-. -
T Consensus 657 ---~~------G~------------------------enRAlEmyTDlRMFD~aQE~~~--~g~~~eKKm---------L 692 (1081)
T KOG1538|consen 657 ---RS------GH------------------------ENRALEMYTDLRMFDYAQEFLG--SGDPKEKKM---------L 692 (1081)
T ss_pred ---Hc------Cc------------------------hhhHHHHHHHHHHHHHHHHHhh--cCChHHHHH---------H
Confidence 11 00 134566663 234322211 135554110 1
Q ss_pred hhccccHHHhhcCHHHHHHHHHHcCCCcHHHHHHHHHHHhcChHHHHhhc-CCcHHHHHHHHHHHHHHhccccHHHHHHH
Q 000731 934 LLMRYTIDLRLQRFENALKHIVSMGDSYHADCLNLMKKYAQLFPLGLKLI-TDPAKMEQVLEAWADHLSDVKCFEDAATT 1012 (1325)
Q Consensus 934 ~~~~~~Id~~L~rye~Al~~l~~~g~~~~d~ale~~~~~~~ly~~AL~L~-~d~~~~~~i~~~~a~~L~~~~~~~eAa~~ 1012 (1325)
-+.|++-.---+...-|.++|+.+|+ .++|++++.+| +--+.+.++. .=+..-++-++..|.||.....+--|+++
T Consensus 693 ~RKRA~WAr~~kePkaAAEmLiSaGe--~~KAi~i~~d~-gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeI 769 (1081)
T KOG1538|consen 693 IRKRADWARNIKEPKAAAEMLISAGE--HVKAIEICGDH-GWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEI 769 (1081)
T ss_pred HHHHHHHhhhcCCcHHHHHHhhcccc--hhhhhhhhhcc-cHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHH
Confidence 23444444456778889999999998 79999999999 8777777776 32333445667899999999999999999
Q ss_pred HHHcCCHHHHHHHHHHcCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcCCHHHHHHHHHHh
Q 000731 1013 YFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCGDVTNGISLLIDA 1090 (1325)
Q Consensus 1013 y~~ag~~ekAl~~y~~ag~W~~al~la~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~yl~d~e~Av~~~~~~ 1090 (1325)
|.+.|+....+++.+..++|.+|+.+|.+++.- +.+++...|..|.+..+|+||-+.|.+ +|.-++|+.++-+.
T Consensus 770 F~k~gD~ksiVqlHve~~~W~eAFalAe~hPe~---~~dVy~pyaqwLAE~DrFeEAqkAfhk-AGr~~EA~~vLeQL 843 (1081)
T KOG1538|consen 770 FLKMGDLKSLVQLHVETQRWDEAFALAEKHPEF---KDDVYMPYAQWLAENDRFEEAQKAFHK-AGRQREAVQVLEQL 843 (1081)
T ss_pred HHHhccHHHHhhheeecccchHhHhhhhhCccc---cccccchHHHHhhhhhhHHHHHHHHHH-hcchHHHHHHHHHh
Confidence 999999999999999999999999999998643 346788889999999999999999888 88888777776543
No 15
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=7.2e-22 Score=229.01 Aligned_cols=380 Identities=12% Similarity=0.119 Sum_probs=246.8
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEE
Q 000731 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1325)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~V~~v~~spdg~~La~as~dG~I~l 101 (1325)
.+.+..+-|-.--+..+-=++.+..|+. .++.. +.+++ +. .-+|.+..|.+..+.+++|+.|+.|++
T Consensus 15 RVKsVd~HPtePw~la~LynG~V~IWny--etqtm---Vksfe--V~------~~PvRa~kfiaRknWiv~GsDD~~IrV 81 (794)
T KOG0276|consen 15 RVKSVDFHPTEPWILAALYNGDVQIWNY--ETQTM---VKSFE--VS------EVPVRAAKFIARKNWIVTGSDDMQIRV 81 (794)
T ss_pred ceeeeecCCCCceEEEeeecCeeEEEec--cccee---eeeee--ec------ccchhhheeeeccceEEEecCCceEEE
Confidence 4444444444433444433667888998 45443 21111 11 236888999999999999999999999
Q ss_pred EeCCCC-eEEEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeeeccccCCCceeccCccccCCCCeEEEE
Q 000731 102 HSVDGN-ATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPIS 180 (1325)
Q Consensus 102 w~~~~~-~~e~vg~~~~~I~~~awSPDG~~LA~~s~dgtV~l~s~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~is 180 (1325)
+|.+|. ++..+..|++.|+|++-.|..-.+.++|.|-+|++|+.+.....++ .|.+|..-|.+|+
T Consensus 82 fnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~q--------------tfeGH~HyVMqv~ 147 (794)
T KOG0276|consen 82 FNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQ--------------TFEGHEHYVMQVA 147 (794)
T ss_pred EecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeee--------------EEcCcceEEEEEE
Confidence 999985 5678888999999999999999999999999999997432222222 2446777889999
Q ss_pred Eec-CCcEEEEeeccccccCCCCEEEEEECCCCceeeeecCCCCceeEEEEccCCC--eEEEEecCCCCCCCCeEEEEeC
Q 000731 181 WRG-DGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGA--NIAAVYDRKSENKCPSIVFYER 257 (1325)
Q Consensus 181 Wsp-DG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~~~v~~lawsPdG~--~IAs~~~d~~~~~~~~V~~~e~ 257 (1325)
|.| |...|| +++. |++||||+.....+-.|+++|...|++|.+=|-|. +|.||++| .+|++||-
T Consensus 148 fnPkD~ntFa-S~sL------DrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD------~tiKvWDy 214 (794)
T KOG0276|consen 148 FNPKDPNTFA-SASL------DRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADD------LTIKVWDY 214 (794)
T ss_pred ecCCCcccee-eeec------cccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCC------ceEEEeec
Confidence 999 568999 6665 59999999977788889999999999999988774 78888885 67999995
Q ss_pred CCceEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeEEEeEEEEecCCcEEEEEccCCCcEEEE
Q 000731 258 NGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLIC 337 (1325)
Q Consensus 258 nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~n~~wylkqel~~~~~~~~~v~Wsp~~~~~L~~ 337 (1325)
....- .-+|.+ |...|..+.|.|.=.++++|+.|+ ||+||+.++|. +-.++.+.-...++++=.+.+.. +.+
T Consensus 215 Qtk~C-V~TLeG-Ht~Nvs~v~fhp~lpiiisgsEDG---TvriWhs~Ty~--lE~tLn~gleRvW~I~~~k~~~~-i~v 286 (794)
T KOG0276|consen 215 QTKSC-VQTLEG-HTNNVSFVFFHPELPIIISGSEDG---TVRIWNSKTYK--LEKTLNYGLERVWCIAAHKGDGK-IAV 286 (794)
T ss_pred chHHH-HHHhhc-ccccceEEEecCCCcEEEEecCCc---cEEEecCccee--hhhhhhcCCceEEEEeecCCCCe-EEE
Confidence 32110 002333 356899999999999999999999 99999999875 33344442222255554444443 566
Q ss_pred EecCCcEEE--------------EEEEEeeeeCCCeeEEEEeCCEEEEe-ecCCcCCCCCceeeeecC-CCCEEEEEEec
Q 000731 338 WTLDGQITT--------------YNFIWTTAVMENSTALVIDGSKILVT-PLSLSLMPPPMYLFSLKF-PTAVTEMAFYS 401 (1325)
Q Consensus 338 ~~~~g~~~~--------------~~~~~~~~~~d~~~v~viDG~~l~lt-~l~~~~vPpPm~~~~l~~-~~~V~~VaFSp 401 (1325)
+...|.+.+ ...+|+.. +-+...+++.+.-- .+. ..-+-|++.+.+.. .=....++-||
T Consensus 287 G~Deg~i~v~lgreeP~vsMd~~gKIiwa~~----~ei~~~~~ks~~~~~ev~-DgErL~LsvKeLgs~eiyPq~L~hsP 361 (794)
T KOG0276|consen 287 GFDEGSVTVKLGREEPAVSMDSNGKIIWAVH----SEIQAVNLKSVGAQKEVT-DGERLPLSVKELGSVEIYPQTLAHSP 361 (794)
T ss_pred eccCCcEEEEccCCCCceeecCCccEEEEcC----ceeeeeeceeccCccccc-CCccccchhhhccccccchHHhccCC
Confidence 665555432 11234332 01111111111000 000 01122344444421 11234677789
Q ss_pred CCCCCEEEEEECCCcEEEEeCCCCCccccccCCceeEeeeccccccCcEEEEEEecCCeEEEEEecCCCCceEEE
Q 000731 402 KSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFR 476 (1325)
Q Consensus 402 dg~~~~LAs~s~Dgti~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~~~~~~~~~ 476 (1325)
+| .+++...||.-.+|..-. + .- ..++.-..+.|++|..-.|+-- +++.++++
T Consensus 362 NG---rfV~VcgdGEyiIyTala---~---Rn-----------K~fG~~~eFvw~~dsne~avRe--s~~~vki~ 414 (794)
T KOG0276|consen 362 NG---RFVVVCGDGEYIIYTALA---L---RN-----------KAFGSGLEFVWAADSNEFAVRE--SNGNVKIF 414 (794)
T ss_pred CC---cEEEEecCccEEEEEeee---h---hh-----------cccccceeEEEcCCCCeEEEEe--cCCceEEE
Confidence 98 677777999998887421 1 10 1234567789999944455431 22455555
No 16
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.94 E-value=8.1e-24 Score=241.80 Aligned_cols=337 Identities=14% Similarity=0.135 Sum_probs=233.9
Q ss_pred CCEEEEEEccCCCEEEEEECCCcEEEEeCCCCe-EEEec---eecCcEEEEEEcCCCCeEEEEeCCccEEEEeec-Ccee
Q 000731 76 DSITAFDYLMEKEALIVGTSSGLLLLHSVDGNA-TEVVG---RVEGGVRFISPSPDGDLLGVTTGFGQILVMTHD-WDLL 150 (1325)
Q Consensus 76 ~~V~~v~~spdg~~La~as~dG~I~lw~~~~~~-~e~vg---~~~~~I~~~awSPDG~~LA~~s~dgtV~l~s~~-~d~~ 150 (1325)
..|.++.|+|||+.+|+++.||+|.+||-.+++ +-.++ .|.++|.+++||||++.++++++|.++++|+-. -.++
T Consensus 191 kFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv 270 (603)
T KOG0318|consen 191 KFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLV 270 (603)
T ss_pred cceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceE
Confidence 469999999999999999999999999987754 33444 679999999999999999999999999999632 2333
Q ss_pred eeeeccccCCCc------------------eec---------cCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCE
Q 000731 151 YENPLEELAEGF------------------DVH---------EPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKR 203 (1325)
Q Consensus 151 ~e~~l~~~~~~~------------------~Vs---------~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~ 203 (1325)
.+......-+.+ .++ ..++.+|...|..++-+|||++|- ++++ |+.
T Consensus 271 ~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~-Sgsy------DG~ 343 (603)
T KOG0318|consen 271 STWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIY-SGSY------DGH 343 (603)
T ss_pred EEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEE-eecc------Cce
Confidence 333322211111 111 334558999999999999999998 6665 489
Q ss_pred EEEEECCCCceeee-ecCCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeC--CC---------------------
Q 000731 204 LKVWERDSGTLQAS-SELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYER--NG--------------------- 259 (1325)
Q Consensus 204 irVWd~~~G~l~~t-~e~~~~~v~~lawsPdG~~IAs~~~d~~~~~~~~V~~~e~--nG--------------------- 259 (1325)
|.=|+..+|...+. .++|...+..++=+-.|.++-++-+| +++.... +|
T Consensus 344 I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd-------~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d 416 (603)
T KOG0318|consen 344 INSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDD-------TLRVISLKDNGYTKSEVVKLGSQPKGLAVLSD 416 (603)
T ss_pred EEEEecCCccccccccccccceEEEEeecCCCcEEEEecCC-------eEEEEecccCcccccceeecCCCceeEEEcCC
Confidence 99999988876654 36677788777777767766655443 1222210 00
Q ss_pred --c----------e----EEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeEEEeEEEE--ecCC
Q 000731 260 --L----------E----RSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRY--LRRD 321 (1325)
Q Consensus 260 --l----------~----~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~n~~wylkqel~~--~~~~ 321 (1325)
. . .+.+.++ -...+.++|.+||++..|+|+.|+ .|+|+.++... ++.+... +...
T Consensus 417 ~~~avv~~~~~iv~l~~~~~~~~~~--~~y~~s~vAv~~~~~~vaVGG~Dg---kvhvysl~g~~--l~ee~~~~~h~a~ 489 (603)
T KOG0318|consen 417 GGTAVVACISDIVLLQDQTKVSSIP--IGYESSAVAVSPDGSEVAVGGQDG---KVHVYSLSGDE--LKEEAKLLEHRAA 489 (603)
T ss_pred CCEEEEEecCcEEEEecCCcceeec--cccccceEEEcCCCCEEEEecccc---eEEEEEecCCc--ccceeeeecccCC
Confidence 0 0 0011111 123467899999999999999999 89999998643 2333222 2223
Q ss_pred cEEEEEccCCCcEEEEEecCCcEEEEEEEEeeeeCCCeeEEEEeCCEEEEeecCCcCCCCCceeeeecCCCCEEEEEEec
Q 000731 322 GIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYS 401 (1325)
Q Consensus 322 ~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDG~~l~lt~l~~~~vPpPm~~~~l~~~~~V~~VaFSp 401 (1325)
.+.+++||++.+ |+.....+.+. .|++.... + +. .-|. -|.+.|++|||||
T Consensus 490 iT~vaySpd~~y-la~~Da~rkvv----~yd~~s~~---~------~~-----------~~w~----FHtakI~~~aWsP 540 (603)
T KOG0318|consen 490 ITDVAYSPDGAY-LAAGDASRKVV----LYDVASRE---V------KT-----------NRWA----FHTAKINCVAWSP 540 (603)
T ss_pred ceEEEECCCCcE-EEEeccCCcEE----EEEcccCc---e------ec-----------ceee----eeeeeEEEEEeCC
Confidence 488999999886 67766666654 34433100 0 00 0111 2788999999999
Q ss_pred CCCCCEEEEEECCCcEEEEeCCCCCccccccCCceeEeeeccccccCcEEEEEEecCCeEEEEEecCCCCceEEEEe
Q 000731 402 KSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGA 478 (1325)
Q Consensus 402 dg~~~~LAs~s~Dgti~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~~~~~~~~~~~ 478 (1325)
++ .++|+++-|.+|.+|+++.|....... ..|...|.++.|..+.+++-++.+ ..+++|++
T Consensus 541 ~n--~~vATGSlDt~Viiysv~kP~~~i~ik-----------nAH~~gVn~v~wlde~tvvSsG~D---a~iK~W~v 601 (603)
T KOG0318|consen 541 NN--KLVATGSLDTNVIIYSVKKPAKHIIIK-----------NAHLGGVNSVAWLDESTVVSSGQD---ANIKVWNV 601 (603)
T ss_pred Cc--eEEEeccccceEEEEEccChhhheEec-----------cccccCceeEEEecCceEEeccCc---ceeEEecc
Confidence 99 899999999999999998754432111 235557999999999987665554 46778875
No 17
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.94 E-value=5.4e-22 Score=234.44 Aligned_cols=448 Identities=14% Similarity=0.138 Sum_probs=318.7
Q ss_pred EEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEEEeC
Q 000731 25 FSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSV 104 (1325)
Q Consensus 25 ~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~V~~v~~spdg~~La~as~dG~I~lw~~ 104 (1325)
.++|++|+..|++-..+. +..+|+ ..++. -|+| +.....|..++.||+|..|++.-+.|...+.+.
T Consensus 19 nl~ft~dG~sviSPvGNr-vsv~dL--knN~S----~Tl~-------~e~~~NI~~ialSp~g~lllavdE~g~~~lvs~ 84 (893)
T KOG0291|consen 19 NLVFTKDGNSVISPVGNR-VSVFDL--KNNKS----YTLP-------LETRYNITRIALSPDGTLLLAVDERGRALLVSL 84 (893)
T ss_pred cEEECCCCCEEEeccCCE-EEEEEc--cCCcc----eeEE-------eecCCceEEEEeCCCceEEEEEcCCCcEEEEec
Confidence 478899999998877666 888888 33332 1222 333568999999999999999999999999987
Q ss_pred CCCeEEEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeeeccccCCCceeccCccccCCCCeEEEEEecC
Q 000731 105 DGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGD 184 (1325)
Q Consensus 105 ~~~~~e~vg~~~~~I~~~awSPDG~~LA~~s~dgtV~l~s~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspD 184 (1325)
....+--.-....+|-|+.|||||+.+|++.+. -+.+|-.- ..+.+ .+.+. +-...+.+|.+.+.+|.|+-|
T Consensus 85 ~~r~Vlh~f~fk~~v~~i~fSPng~~fav~~gn-~lqiw~~P-~~~~~-~~~pF-----vl~r~~~g~fddi~si~Ws~D 156 (893)
T KOG0291|consen 85 LSRSVLHRFNFKRGVGAIKFSPNGKFFAVGCGN-LLQIWHAP-GEIKN-EFNPF-----VLHRTYLGHFDDITSIDWSDD 156 (893)
T ss_pred ccceeeEEEeecCccceEEECCCCcEEEEEecc-eeEEEecC-cchhc-ccCcc-----eEeeeecCCccceeEEEeccC
Confidence 653221111347899999999999999998875 67787421 22221 11111 111234478899999999999
Q ss_pred CcEEEEeeccccccCCCCEEEEEECCCCc--eeeeecCCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeCC----
Q 000731 185 GKYFATLSEFCNSSKLHKRLKVWERDSGT--LQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERN---- 258 (1325)
Q Consensus 185 G~~lAtvss~d~~~~~d~~irVWd~~~G~--l~~t~e~~~~~v~~lawsPdG~~IAs~~~d~~~~~~~~V~~~e~n---- 258 (1325)
.++|+ +++ .|.++|||+.+.-+ ....+.+|...|-+.-|..+..-|.+.+.| +.+-+|+-+
T Consensus 157 Sr~l~-~gs------rD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskd------G~l~~W~~~~~P~ 223 (893)
T KOG0291|consen 157 SRLLV-TGS------RDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTVSKD------GALFVWTCDLRPP 223 (893)
T ss_pred CceEE-ecc------ccceEEEEEeccccccceEeccCCCcceEEEEeccCcceEEEEecC------ceEEEEEecCCCc
Confidence 99999 664 46899999984322 245577899999888899999999999885 457777644
Q ss_pred --------------------Cce--EEEE--Eec----cCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeE
Q 000731 259 --------------------GLE--RSSF--DIN----EQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWY 310 (1325)
Q Consensus 259 --------------------Gl~--~~~f--~l~----~~~~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~n~~wy 310 (1325)
|.. |.-| .+. ......|.+.+|++-..+||++-..+ ...|+.+....
T Consensus 224 ~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG---~f~LyelP~f~-- 298 (893)
T KOG0291|consen 224 ELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSG---EFGLYELPDFN-- 298 (893)
T ss_pred ccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCC---eeEEEecCCce--
Confidence 211 1111 111 11236799999999999999999888 78888887643
Q ss_pred EEeEEEEecCCcEEEEEccCCCcEEEEEec-CCcEEEEEEEEee---------------e--eCCCeeEEEEeCCEEEEe
Q 000731 311 LKYEIRYLRRDGIRFMWHPTKPLQLICWTL-DGQITTYNFIWTT---------------A--VMENSTALVIDGSKILVT 372 (1325)
Q Consensus 311 lkqel~~~~~~~~~v~Wsp~~~~~L~~~~~-~g~~~~~~~~~~~---------------~--~~d~~~v~viDG~~l~lt 372 (1325)
+.+.+..++.....+.|+..|.. |++++. -|++.+++|.-.. + |++.-+++..|+++|++|
T Consensus 299 lih~LSis~~~I~t~~~N~tGDW-iA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvW 377 (893)
T KOG0291|consen 299 LIHSLSISDQKILTVSFNSTGDW-IAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVW 377 (893)
T ss_pred EEEEeecccceeeEEEecccCCE-EEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEE
Confidence 55666665444578899987765 666664 3677666654211 1 455556777788899999
Q ss_pred ecCCcCCCCCceeeee-cCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccccccCCceeE------ee-----
Q 000731 373 PLSLSLMPPPMYLFSL-KFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVV------EA----- 440 (1325)
Q Consensus 373 ~l~~~~vPpPm~~~~l-~~~~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~~~~~~~~~~~~g~~~~~------~~----- 440 (1325)
+... ..|..++ +|.+.|..|.|+..| +.+.+.+-||+|+.||+..-.+..++.+++..- .+
T Consensus 378 n~~S-----gfC~vTFteHts~Vt~v~f~~~g--~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV 450 (893)
T KOG0291|consen 378 NTQS-----GFCFVTFTEHTSGVTAVQFTARG--NVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELV 450 (893)
T ss_pred eccC-----ceEEEEeccCCCceEEEEEEecC--CEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEE
Confidence 7643 4788888 599999999999999 999999999999999986533332222221110 00
Q ss_pred -------------e--------ccccccCcEEEEEEecCCeEEEEEecCCCCceEEEEeecccCccccchhhhhhhhccc
Q 000731 441 -------------C--------ISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGATLNEDGLLGFYAQEIELACSE 499 (1325)
Q Consensus 441 -------------~--------~~~~~~~~v~~l~~~~d~~lla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (1325)
+ ...+|-+.|..++|+|+|..||+++.+ .++.+|++- +.
T Consensus 451 ~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWD--kTVRiW~if-~s----------------- 510 (893)
T KOG0291|consen 451 CAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWD--KTVRIWDIF-SS----------------- 510 (893)
T ss_pred EeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEecccc--ceEEEEEee-cc-----------------
Confidence 0 113466689999999999999999988 689999862 00
Q ss_pred ccccccccccccceeeeeecccCCcEEEEeeCCCCCceEEEEeeCCeEEEEeccc
Q 000731 500 DHVQGLLTCAGWHAKVSTQIPLEGLVIAIAPNNAKKYSAFLQFHGGKISEYMSRV 554 (1325)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~q~~dG~v~~~~~~~ 554 (1325)
.+ .....++...|..++++| +++.+++.+.||.|-.|+...
T Consensus 511 ---------~~----~vEtl~i~sdvl~vsfrP-dG~elaVaTldgqItf~d~~~ 551 (893)
T KOG0291|consen 511 ---------SG----TVETLEIRSDVLAVSFRP-DGKELAVATLDGQITFFDIKE 551 (893)
T ss_pred ---------Cc----eeeeEeeccceeEEEEcC-CCCeEEEEEecceEEEEEhhh
Confidence 11 122456677899999999 999999999999999997654
No 18
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.94 E-value=3e-23 Score=244.79 Aligned_cols=434 Identities=15% Similarity=0.121 Sum_probs=307.3
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEE
Q 000731 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1325)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~V~~v~~spdg~~La~as~dG~I~l 101 (1325)
+++..+.|...+....++...++..||+ .+++.+..+..+.. ...|+++.-+||.-.||+|.+||.|+|
T Consensus 23 N~~~~~~~~~~Gr~va~~a~E~vn~Wdl--Rtge~~~~l~~~~~---------k~evt~l~~~~d~l~lAVGYaDGsVqi 91 (888)
T KOG0306|consen 23 NINFVVKRSGKGRAVAVSALEQVNIWDL--RTGEIEKKLILLKK---------KAEVTCLRSSDDILLLAVGYADGSVQI 91 (888)
T ss_pred ceeEEEeecCCCcEEEEeccccEeEEee--ecchhhhhhhhhcc---------cceEEEeeccCCcceEEEEecCceEEe
Confidence 6777888876555555655556999999 67754333321111 136889988999999999999999999
Q ss_pred EeCCCCeEE-EeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeeeccccCCCceeccCccccCCCCeEEEE
Q 000731 102 HSVDGNATE-VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPIS 180 (1325)
Q Consensus 102 w~~~~~~~e-~vg~~~~~I~~~awSPDG~~LA~~s~dgtV~l~s~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~is 180 (1325)
|+..++.+. ....|...|+++.|+-+|..||+||.|+.|++| |.+.|.-+-. .++|.+.++..-
T Consensus 92 f~~~s~~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvw----DlV~E~Gl~r-----------L~GHkd~iT~~~ 156 (888)
T KOG0306|consen 92 FSLESEEILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVW----DLVGEEGLFR-----------LRGHKDSITQAL 156 (888)
T ss_pred eccCCCceeeeecccccceEEEEEcccCceEeecCCCccEEEE----EeccceeeEE-----------eecchHHHhHHh
Confidence 999865433 344469999999999999999999999999986 5555543322 226777788888
Q ss_pred EecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeecCCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeC---
Q 000731 181 WRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYER--- 257 (1325)
Q Consensus 181 WspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~~~v~~lawsPdG~~IAs~~~d~~~~~~~~V~~~e~--- 257 (1325)
|..+..++++++ .|..||+||.++-.+..|--.|.+.++++++.+ +++.++..+ ..+.+|+.
T Consensus 157 F~~~~~~lvS~s-------KDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~--~~lvt~~~d------se~~v~~L~~~ 221 (888)
T KOG0306|consen 157 FLNGDSFLVSVS-------KDSMIKFWDLETQHCFETHVDHRGEIWALVLDE--KLLVTAGTD------SELKVWELAFE 221 (888)
T ss_pred ccCCCeEEEEec-------cCceEEEEecccceeeeEEecccceEEEEEEec--ceEEEEecC------CceEEEEeecc
Confidence 888777777343 468999999988888888777888888888877 222222221 11222211
Q ss_pred --------------------------------------------------------------------------------
Q 000731 258 -------------------------------------------------------------------------------- 257 (1325)
Q Consensus 258 -------------------------------------------------------------------------------- 257 (1325)
T Consensus 222 ~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~ 301 (888)
T KOG0306|consen 222 DDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENED 301 (888)
T ss_pred cccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhcccccccc
Confidence
Q ss_pred -----------------------------CCceEEE-----------EEec-----------------cCCCCcEEEEEE
Q 000731 258 -----------------------------NGLERSS-----------FDIN-----------------EQIDSTVELLKW 280 (1325)
Q Consensus 258 -----------------------------nGl~~~~-----------f~l~-----------------~~~~~~V~~laW 280 (1325)
.+..... +.++ ..|...|.++++
T Consensus 302 ~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~v 381 (888)
T KOG0306|consen 302 DVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCV 381 (888)
T ss_pred chhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEe
Confidence 0000000 0010 012345889999
Q ss_pred ccCCCeeEEEEccCCCCeEEEEEeeCCeeEEEeEEEEecCCcEEEEEccCCCcEEEEEecCCcEEEEEE-----------
Q 000731 281 NCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNF----------- 349 (1325)
Q Consensus 281 SpDg~~LAs~~~d~~~~~VqLW~~~n~~wylkqel~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~----------- 349 (1325)
|.|+.++++++.+. |++|+........ .+.........|-|-+. .+.+++.+|.+.+++.
T Consensus 382 S~d~~~~~Sga~~S----ikiWn~~t~kciR----Ti~~~y~l~~~Fvpgd~-~Iv~G~k~Gel~vfdlaS~~l~Eti~A 452 (888)
T KOG0306|consen 382 SSDSILLASGAGES----IKIWNRDTLKCIR----TITCGYILASKFVPGDR-YIVLGTKNGELQVFDLASASLVETIRA 452 (888)
T ss_pred ecCceeeeecCCCc----EEEEEccCcceeE----EeccccEEEEEecCCCc-eEEEeccCCceEEEEeehhhhhhhhhc
Confidence 99999999987665 9999998754322 22222336677877554 4788888898766544
Q ss_pred ----EEeee--eCCCeeEEEEeCCEEEEeecCCcC-CCCCce-------eeeecCCCCEEEEEEecCCCCCEEEEEECCC
Q 000731 350 ----IWTTA--VMENSTALVIDGSKILVTPLSLSL-MPPPMY-------LFSLKFPTAVTEMAFYSKSSKNCLAAILSDG 415 (1325)
Q Consensus 350 ----~~~~~--~~d~~~v~viDG~~l~lt~l~~~~-vPpPm~-------~~~l~~~~~V~~VaFSpdg~~~~LAs~s~Dg 415 (1325)
+|+++ |++.+.+.+..+++|++|+|.... +|-... .++|++++.|.+|++|||| ..||++.-|+
T Consensus 453 HdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdg--k~LaVsLLdn 530 (888)
T KOG0306|consen 453 HDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDG--KLLAVSLLDN 530 (888)
T ss_pred cccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCC--cEEEEEeccC
Confidence 48877 788899999999999999997543 332221 2567789999999999999 9999999999
Q ss_pred cEEEEeCCCCCccccccCCceeEeeeccccccCcEEEEEEecCCeEEEEEecCCCCceEEEEeecccCccccchhhhhhh
Q 000731 416 CLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGATLNEDGLLGFYAQEIEL 495 (1325)
Q Consensus 416 ti~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (1325)
||++|-+++..-.-.+.||. -.|.++--+||+.++++++.+ .++++|-+++.+
T Consensus 531 TVkVyflDtlKFflsLYGHk------------LPV~smDIS~DSklivTgSAD--KnVKiWGLdFGD------------- 583 (888)
T KOG0306|consen 531 TVKVYFLDTLKFFLSLYGHK------------LPVLSMDISPDSKLIVTGSAD--KNVKIWGLDFGD------------- 583 (888)
T ss_pred eEEEEEecceeeeeeecccc------------cceeEEeccCCcCeEEeccCC--CceEEeccccch-------------
Confidence 99999998743333345553 358888889999999999887 578899876632
Q ss_pred hcccccccccccccccceeeeeecccCCcEEEEeeCCCCCceEEEEeeCCeEEEEecc
Q 000731 496 ACSEDHVQGLLTCAGWHAKVSTQIPLEGLVIAIAPNNAKKYSAFLQFHGGKISEYMSR 553 (1325)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~q~~dG~v~~~~~~ 553 (1325)
| + ++...+++.|..|.+-| +..-+|....||+|-.|+..
T Consensus 584 -C---H--------------KS~fAHdDSvm~V~F~P-~~~~FFt~gKD~kvKqWDg~ 622 (888)
T KOG0306|consen 584 -C---H--------------KSFFAHDDSVMSVQFLP-KTHLFFTCGKDGKVKQWDGE 622 (888)
T ss_pred -h---h--------------hhhhcccCceeEEEEcc-cceeEEEecCcceEEeechh
Confidence 2 1 22455677888998888 66667778999999999753
No 19
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.93 E-value=1e-25 Score=250.84 Aligned_cols=283 Identities=16% Similarity=0.157 Sum_probs=219.5
Q ss_pred CCEEEEEEccCCCEEEEEECCCcEEEEeCCCCeEE-EeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeee
Q 000731 76 DSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATE-VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENP 154 (1325)
Q Consensus 76 ~~V~~v~~spdg~~La~as~dG~I~lw~~~~~~~e-~vg~~~~~I~~~awSPDG~~LA~~s~dgtV~l~s~~~d~~~e~~ 154 (1325)
-.|..|.|.|+|+.|++|+..|.+-|||..+--.| +...|+..|.+|.||++|.++++++.+|.|++|....+.+....
T Consensus 97 c~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~~ 176 (464)
T KOG0284|consen 97 CPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKIIQ 176 (464)
T ss_pred cceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHHhh
Confidence 46899999999999999999999999998654444 67789999999999999999999999999999876655544333
Q ss_pred ccccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeecCCCCceeEEEEccCC
Q 000731 155 LEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSG 234 (1325)
Q Consensus 155 l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~~~v~~lawsPdG 234 (1325)
.+ |+..|..++|||.-.-|+|+| +|++|+|||-..++.-+.+.+|...|.+++|.|.-
T Consensus 177 ah---------------h~eaIRdlafSpnDskF~t~S-------dDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~k 234 (464)
T KOG0284|consen 177 AH---------------HAEAIRDLAFSPNDSKFLTCS-------DDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTK 234 (464)
T ss_pred Hh---------------hhhhhheeccCCCCceeEEec-------CCCeEEEEeccCCchhheeccCCCCcceeccCCcc
Confidence 22 234679999999877788443 46999999987777777778899999999999999
Q ss_pred CeEEEEecCCCCCCCCeEEEEeC-CCceEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeEEEe
Q 000731 235 ANIAAVYDRKSENKCPSIVFYER-NGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKY 313 (1325)
Q Consensus 235 ~~IAs~~~d~~~~~~~~V~~~e~-nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~n~~wylkq 313 (1325)
.+|||++.| +.|+|||. .|... .++.. +...|..+.|+|+|..|++++.|. .++++|.....- -+
T Consensus 235 gLiasgskD------nlVKlWDprSg~cl--~tlh~-HKntVl~~~f~~n~N~Llt~skD~---~~kv~DiR~mkE--l~ 300 (464)
T KOG0284|consen 235 GLIASGSKD------NLVKLWDPRSGSCL--ATLHG-HKNTVLAVKFNPNGNWLLTGSKDQ---SCKVFDIRTMKE--LF 300 (464)
T ss_pred ceeEEccCC------ceeEeecCCCcchh--hhhhh-ccceEEEEEEcCCCCeeEEccCCc---eEEEEehhHhHH--HH
Confidence 999999986 47999994 44211 12222 346799999999999999999999 999999874320 12
Q ss_pred EEEEecCCcEEEEEccCCCcEEEEEecCCcEEEEEEEEeeeeCCCeeEEEEeCCEEEEeecCCcCCCCCceeeeecCCCC
Q 000731 314 EIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTA 393 (1325)
Q Consensus 314 el~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDG~~l~lt~l~~~~vPpPm~~~~l~~~~~ 393 (1325)
.++.|.++.+++.|||-.+..+..+..||.+.+ |.+ +. ......+|+ .|...
T Consensus 301 ~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh----~~v-----------~~--------~~p~~~i~~-----AHd~~ 352 (464)
T KOG0284|consen 301 TYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVH----WVV-----------GL--------EEPLGEIPP-----AHDGE 352 (464)
T ss_pred HhhcchhhheeeccccccccceeeccCCCceEE----Eec-----------cc--------cccccCCCc-----ccccc
Confidence 334455566999999998877777777777643 221 10 010111222 36889
Q ss_pred EEEEEEecCCCCCEEEEEECCCcEEEEeCCC
Q 000731 394 VTEMAFYSKSSKNCLAAILSDGCLCVVDLPA 424 (1325)
Q Consensus 394 V~~VaFSpdg~~~~LAs~s~Dgti~lw~~~~ 424 (1325)
|++++|+|=| -+||+++.|.++++|....
T Consensus 353 iwsl~~hPlG--hil~tgsnd~t~rfw~r~r 381 (464)
T KOG0284|consen 353 IWSLAYHPLG--HILATGSNDRTVRFWTRNR 381 (464)
T ss_pred eeeeeccccc--eeEeecCCCcceeeeccCC
Confidence 9999999999 8999999999999998764
No 20
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.93 E-value=5.6e-24 Score=227.85 Aligned_cols=280 Identities=15% Similarity=0.094 Sum_probs=212.0
Q ss_pred ceeEEeeecC-CCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEE
Q 000731 22 ILQFSALDIE-QNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLL 100 (1325)
Q Consensus 22 ~~~~~~~d~~-~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~V~~v~~spdg~~La~as~dG~I~ 100 (1325)
.+..+++-+. .++++++|-|..|+.|+++ ..+ ++.-..--.+.+| ...|.++..++||++..+++.||+++
T Consensus 17 ~Vt~la~~~~~~~~l~sasrDk~ii~W~L~--~dd--~~~G~~~r~~~GH----sH~v~dv~~s~dg~~alS~swD~~lr 88 (315)
T KOG0279|consen 17 WVTALAIKIKNSDILVSASRDKTIIVWKLT--SDD--IKYGVPVRRLTGH----SHFVSDVVLSSDGNFALSASWDGTLR 88 (315)
T ss_pred eEEEEEeecCCCceEEEcccceEEEEEEec--cCc--cccCceeeeeecc----ceEecceEEccCCceEEeccccceEE
Confidence 7788887766 7899999999999999995 222 1110000114554 24799999999999999999999999
Q ss_pred EEeCCCCeE--EEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeeeccccCCCceeccCccccCCCCeEE
Q 000731 101 LHSVDGNAT--EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSP 178 (1325)
Q Consensus 101 lw~~~~~~~--e~vg~~~~~I~~~awSPDG~~LA~~s~dgtV~l~s~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~ 178 (1325)
+||+.+++. ..+| |...|.+++||||...+++++.|.||++|+-.++...+..-. .+.+.|.+
T Consensus 89 lWDl~~g~~t~~f~G-H~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~--------------~~~~WVsc 153 (315)
T KOG0279|consen 89 LWDLATGESTRRFVG-HTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHED--------------SHREWVSC 153 (315)
T ss_pred EEEecCCcEEEEEEe-cCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecC--------------CCcCcEEE
Confidence 999998653 3666 588899999999999999999999999987665555444321 11357899
Q ss_pred EEEecC--CcEEEEeeccccccCCCCEEEEEECCCCceeeeecCCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEEEe
Q 000731 179 ISWRGD--GKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYE 256 (1325)
Q Consensus 179 isWspD--G~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~~~v~~lawsPdG~~IAs~~~d~~~~~~~~V~~~e 256 (1325)
+.|+|. .-+|+ +++ .|++|||||.++-++..++-+|.+.++.+++||||.++|+|+.| ..+.+|+
T Consensus 154 vrfsP~~~~p~Iv-s~s------~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkd------g~~~Lwd 220 (315)
T KOG0279|consen 154 VRFSPNESNPIIV-SAS------WDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKD------GEAMLWD 220 (315)
T ss_pred EEEcCCCCCcEEE-Ecc------CCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCC------ceEEEEE
Confidence 999998 55777 443 46999999998888888999999999999999999999999875 6799999
Q ss_pred CCCceEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCee--EEEeEEEEec---CCc--EEEEEcc
Q 000731 257 RNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHW--YLKYEIRYLR---RDG--IRFMWHP 329 (1325)
Q Consensus 257 ~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~n~~w--ylkqel~~~~---~~~--~~v~Wsp 329 (1325)
.|-.++- +.+ .+...|.+++|||+--.|+.+.... |+||+...... -|+.+...+. .++ .+++|++
T Consensus 221 L~~~k~l-ysl--~a~~~v~sl~fspnrywL~~at~~s----IkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~ 293 (315)
T KOG0279|consen 221 LNEGKNL-YSL--EAFDIVNSLCFSPNRYWLCAATATS----IKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSA 293 (315)
T ss_pred ccCCcee-Eec--cCCCeEeeEEecCCceeEeeccCCc----eEEEeccchhhhhhccccccccccccCCcEEEEEEEcC
Confidence 8755542 233 2346799999999999999888775 99999876432 1233333321 123 7899999
Q ss_pred CCCcEEEEEecCCcEE
Q 000731 330 TKPLQLICWTLDGQIT 345 (1325)
Q Consensus 330 ~~~~~L~~~~~~g~~~ 345 (1325)
++.. |..+..+|.+.
T Consensus 294 dG~t-Lf~g~td~~ir 308 (315)
T KOG0279|consen 294 DGQT-LFAGYTDNVIR 308 (315)
T ss_pred CCcE-EEeeecCCcEE
Confidence 9864 66666666664
No 21
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=8.7e-23 Score=243.41 Aligned_cols=298 Identities=12% Similarity=0.108 Sum_probs=213.3
Q ss_pred CCCEEEEEEccCCCEEEEEECCCcEEEEeCCCCe-EEEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeee
Q 000731 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNA-TEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYEN 153 (1325)
Q Consensus 75 ~~~V~~v~~spdg~~La~as~dG~I~lw~~~~~~-~e~vg~~~~~I~~~awSPDG~~LA~~s~dgtV~l~s~~~d~~~e~ 153 (1325)
..+|-+++|+|.-..+.++-.+|.|.+||-.-+. ++.+..|++.|..+.|.|++-+.++|+.|-+|++|+-. ...
T Consensus 9 SsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk----~rr 84 (1202)
T KOG0292|consen 9 SSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYK----TRR 84 (1202)
T ss_pred cccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecc----cce
Confidence 3589999999999999999999999999987654 45666789999999999999999999999999999732 222
Q ss_pred eccccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeecCCCCceeEEEEccC
Q 000731 154 PLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPS 233 (1325)
Q Consensus 154 ~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~~~v~~lawsPd 233 (1325)
++-+.. +|.+.|.++.|.+.=-++. ++| .|.||||||-.+++++.++.+|...|.+-.|.|.
T Consensus 85 clftL~-----------GHlDYVRt~~FHheyPWIl-SAS------DDQTIrIWNwqsr~~iavltGHnHYVMcAqFhpt 146 (1202)
T KOG0292|consen 85 CLFTLL-----------GHLDYVRTVFFHHEYPWIL-SAS------DDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPT 146 (1202)
T ss_pred ehhhhc-----------cccceeEEeeccCCCceEE-Ecc------CCCeEEEEeccCCceEEEEecCceEEEeeccCCc
Confidence 333322 7778899999999999998 554 3689999999999999999999999999999999
Q ss_pred CCeEEEEecCCCCCCCCeEEEEeCCCceEEEEEeccCCCCcEEEEEEccCCCeeE---EEEccCCCCeEEEEEeeCCeeE
Q 000731 234 GANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLA---AVVRFEEYDSVKICFFSNNHWY 310 (1325)
Q Consensus 234 G~~IAs~~~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LA---s~~~d~~~~~VqLW~~~n~~wy 310 (1325)
-.+|+|+|-| .+|++||..|++.+.. . ++ ++.=-+-|..+. .+..|- .|+.
T Consensus 147 EDlIVSaSLD------QTVRVWDisGLRkk~~--~-pg-----~~e~~~~~~~~~~dLfg~~Da---VVK~--------- 200 (1202)
T KOG0292|consen 147 EDLIVSASLD------QTVRVWDISGLRKKNK--A-PG-----SLEDQMRGQQGNSDLFGQTDA---VVKH--------- 200 (1202)
T ss_pred cceEEEeccc------ceEEEEeecchhccCC--C-CC-----CchhhhhccccchhhcCCcCe---eeee---------
Confidence 9999999996 5699999999886531 0 10 000001111111 111122 3321
Q ss_pred EEeEEEEecCCcEEEEEccCCCcEEEEEecCCcEEEEEEEEeeeeCCCeeEEEEeCCEEEEeecCC---cCCCCCceeee
Q 000731 311 LKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSL---SLMPPPMYLFS 387 (1325)
Q Consensus 311 lkqel~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDG~~l~lt~l~~---~~vPpPm~~~~ 387 (1325)
.+.+|.....-.+|||.-|. +..+. |+..|++|.... |-+. .|
T Consensus 201 ---VLEGHDRGVNwaAfhpTlpl-iVSG~-------------------------DDRqVKlWrmnetKaWEvD--tc--- 246 (1202)
T KOG0292|consen 201 ---VLEGHDRGVNWAAFHPTLPL-IVSGA-------------------------DDRQVKLWRMNETKAWEVD--TC--- 246 (1202)
T ss_pred ---eecccccccceEEecCCcce-EEecC-------------------------CcceeeEEEeccccceeeh--hh---
Confidence 23333333355677777664 22222 233333333321 1110 01
Q ss_pred ecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccccccCCceeEeeeccccccCcEEEEEEecCCeEEEEEec
Q 000731 388 LKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHH 467 (1325)
Q Consensus 388 l~~~~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~ 467 (1325)
-.|.++|.+|-|+|.- +.+.+.+.|++|++||.+.....+++. -..++.+-++-.|...++|.+++
T Consensus 247 rgH~nnVssvlfhp~q--~lIlSnsEDksirVwDm~kRt~v~tfr------------rendRFW~laahP~lNLfAAgHD 312 (1202)
T KOG0292|consen 247 RGHYNNVSSVLFHPHQ--DLILSNSEDKSIRVWDMTKRTSVQTFR------------RENDRFWILAAHPELNLFAAGHD 312 (1202)
T ss_pred hcccCCcceEEecCcc--ceeEecCCCccEEEEecccccceeeee------------ccCCeEEEEEecCCcceeeeecC
Confidence 1478899999999987 799999999999999998654443321 12468999999999999999887
Q ss_pred C
Q 000731 468 G 468 (1325)
Q Consensus 468 ~ 468 (1325)
+
T Consensus 313 s 313 (1202)
T KOG0292|consen 313 S 313 (1202)
T ss_pred C
Confidence 3
No 22
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.93 E-value=4.4e-24 Score=262.87 Aligned_cols=317 Identities=15% Similarity=0.171 Sum_probs=225.9
Q ss_pred CCEEEEEEccCCCEEEEEE--CCCcEEEEeCCC-------------CeEEEeceecCcEEEEEEcCCCCeEEEEeCCccE
Q 000731 76 DSITAFDYLMEKEALIVGT--SSGLLLLHSVDG-------------NATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQI 140 (1325)
Q Consensus 76 ~~V~~v~~spdg~~La~as--~dG~I~lw~~~~-------------~~~e~vg~~~~~I~~~awSPDG~~LA~~s~dgtV 140 (1325)
..|.+|+.+|||..+|+|+ .||.+.+|+.+. +.+-.+-.|.+.|+|+.|||||++||+||+|+-|
T Consensus 14 ~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v 93 (942)
T KOG0973|consen 14 KSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLV 93 (942)
T ss_pred eeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceE
Confidence 4689999999999999999 999999999752 0112445678999999999999999999999999
Q ss_pred EEEeecCceeeeeeccccCCCceec----cCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceee
Q 000731 141 LVMTHDWDLLYENPLEELAEGFDVH----EPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQA 216 (1325)
Q Consensus 141 ~l~s~~~d~~~e~~l~~~~~~~~Vs----~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~ 216 (1325)
.+|.+..-........+.. .+.|. -..+.+|+..|..+.|+||+.+|| +.+. |++|-|||..+.++..
T Consensus 94 ~iW~~~~~~~~~~fgs~g~-~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lv-S~s~------DnsViiwn~~tF~~~~ 165 (942)
T KOG0973|consen 94 MIWERAEIGSGTVFGSTGG-AKNVESWKVVSILRGHDSDVLDVNWSPDDSLLV-SVSL------DNSVIIWNAKTFELLK 165 (942)
T ss_pred EEeeecccCCccccccccc-ccccceeeEEEEEecCCCccceeccCCCccEEE-Eecc------cceEEEEccccceeee
Confidence 9998764122222211111 11110 123448999999999999999999 4444 5899999998999999
Q ss_pred eecCCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeCCCc--eEEEEEec---cCCCCcEEEEEEccCCCeeEEEE
Q 000731 217 SSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGL--ERSSFDIN---EQIDSTVELLKWNCMSDLLAAVV 291 (1325)
Q Consensus 217 t~e~~~~~v~~lawsPdG~~IAs~~~d~~~~~~~~V~~~e~nGl--~~~~f~l~---~~~~~~V~~laWSpDg~~LAs~~ 291 (1325)
++++|.++|..++|-|-|+++||-++| .+|++|..+.+ .|. .+-+ .+.+.....++|||||++||+.-
T Consensus 166 vl~~H~s~VKGvs~DP~Gky~ASqsdD------rtikvwrt~dw~i~k~-It~pf~~~~~~T~f~RlSWSPDG~~las~n 238 (942)
T KOG0973|consen 166 VLRGHQSLVKGVSWDPIGKYFASQSDD------RTLKVWRTSDWGIEKS-ITKPFEESPLTTFFLRLSWSPDGHHLASPN 238 (942)
T ss_pred eeecccccccceEECCccCeeeeecCC------ceEEEEEcccceeeEe-eccchhhCCCcceeeecccCCCcCeecchh
Confidence 999999999999999999999999986 57999985432 221 1111 12234688999999999999975
Q ss_pred c-cCCCCeEEEEEeeCCeeEEEeEEEEecCCcEEEEEccCCCcEEEEEecCCcEEEEEEEEeeeeCCCeeEEE-EeCCEE
Q 000731 292 R-FEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALV-IDGSKI 369 (1325)
Q Consensus 292 ~-d~~~~~VqLW~~~n~~wylkqel~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~v-iDG~~l 369 (1325)
. ++++.+++|-+.++ |.-.+.+..|......+.|+|-=-. --..+|.....+-.+ .++|+ .-+..|
T Consensus 239 A~n~~~~~~~IieR~t--Wk~~~~LvGH~~p~evvrFnP~lfe---~~~~ng~~~~~~~~y-------~i~AvgSqDrSl 306 (942)
T KOG0973|consen 239 AVNGGKSTIAIIERGT--WKVDKDLVGHSAPVEVVRFNPKLFE---RNNKNGTSTQPNCYY-------CIAAVGSQDRSL 306 (942)
T ss_pred hccCCcceeEEEecCC--ceeeeeeecCCCceEEEEeChHHhc---cccccCCccCCCcce-------EEEEEecCCccE
Confidence 4 34566999999976 5445667776654488899983210 000123221111000 12222 234457
Q ss_pred EEeecCCcCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCC
Q 000731 370 LVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPA 424 (1325)
Q Consensus 370 ~lt~l~~~~vPpPm~~~~l~~~~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~~~~ 424 (1325)
.+|... .|.||..-.=-+...|.+++||||| -.|.+++.||+|.+..++.
T Consensus 307 SVW~T~---~~RPl~vi~~lf~~SI~DmsWspdG--~~LfacS~DGtV~~i~Fee 356 (942)
T KOG0973|consen 307 SVWNTA---LPRPLFVIHNLFNKSIVDMSWSPDG--FSLFACSLDGTVALIHFEE 356 (942)
T ss_pred EEEecC---CCCchhhhhhhhcCceeeeeEcCCC--CeEEEEecCCeEEEEEcch
Confidence 777653 3677753211257789999999999 8899999999999999875
No 23
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.93 E-value=3.3e-23 Score=221.98 Aligned_cols=298 Identities=15% Similarity=0.156 Sum_probs=220.5
Q ss_pred EeceecCcEEEEEEcCC-CCeEEEEeCCccEEEEeecC-ceeeeeeccccCCCceeccCccccCCCCeEEEEEecCCcEE
Q 000731 111 VVGRVEGGVRFISPSPD-GDLLGVTTGFGQILVMTHDW-DLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYF 188 (1325)
Q Consensus 111 ~vg~~~~~I~~~awSPD-G~~LA~~s~dgtV~l~s~~~-d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~l 188 (1325)
....|.+.|.+++..|+ -++|.+++.|.++++|...- |..++.+... |.+|...|..+.-++||+|+
T Consensus 10 tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~-----------~~GHsH~v~dv~~s~dg~~a 78 (315)
T KOG0279|consen 10 TLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRR-----------LTGHSHFVSDVVLSSDGNFA 78 (315)
T ss_pred eecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeee-----------eeccceEecceEEccCCceE
Confidence 34457899999999998 57899999999999996322 2223333332 33677788999999999998
Q ss_pred EEeeccccccCCCCEEEEEECCCCceeeeecCCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeCCCceEEEEEec
Q 000731 189 ATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDIN 268 (1325)
Q Consensus 189 Atvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~~~v~~lawsPdG~~IAs~~~d~~~~~~~~V~~~e~nGl~~~~f~l~ 268 (1325)
. +++. |+++|+||..+|+....+.+|...|.+++|+||.+.|.||++|+ +|.+|+.-|.. .+++.
T Consensus 79 l-S~sw------D~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDk------Tiklwnt~g~c--k~t~~ 143 (315)
T KOG0279|consen 79 L-SASW------DGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDK------TIKLWNTLGVC--KYTIH 143 (315)
T ss_pred E-eccc------cceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcc------eeeeeeecccE--EEEEe
Confidence 8 5543 69999999999999999999999999999999999999999974 69999965533 34444
Q ss_pred cCC-CCcEEEEEEccC--CCeeEEEEccCCCCeEEEEEeeCCeeEEEeEEEEecCCcEEEEEccCCCcEEEEEecCCcEE
Q 000731 269 EQI-DSTVELLKWNCM--SDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQIT 345 (1325)
Q Consensus 269 ~~~-~~~V~~laWSpD--g~~LAs~~~d~~~~~VqLW~~~n~~wylkqel~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~ 345 (1325)
... .++|..+.|+|+ .-++++++.|+ +|++||..|.+ +++.+..+....+.+..|||+.++ ..+..+
T Consensus 144 ~~~~~~WVscvrfsP~~~~p~Ivs~s~Dk---tvKvWnl~~~~--l~~~~~gh~~~v~t~~vSpDGslc-asGgkd---- 213 (315)
T KOG0279|consen 144 EDSHREWVSCVRFSPNESNPIIVSASWDK---TVKVWNLRNCQ--LRTTFIGHSGYVNTVTVSPDGSLC-ASGGKD---- 213 (315)
T ss_pred cCCCcCcEEEEEEcCCCCCcEEEEccCCc---eEEEEccCCcc--hhhccccccccEEEEEECCCCCEE-ecCCCC----
Confidence 333 679999999999 67999999999 99999999864 456665655555889999998752 222222
Q ss_pred EEEEEEeeeeCCCeeEEEEeCCEEEEeecCCcCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCC
Q 000731 346 TYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAP 425 (1325)
Q Consensus 346 ~~~~~~~~~~~d~~~v~viDG~~l~lt~l~~~~vPpPm~~~~l~~~~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~~~~~ 425 (1325)
+.+.+|+++.. .+.+++++...|++++|+|+. ..|+.++.. .|+||++++.
T Consensus 214 ---------------------g~~~LwdL~~~-----k~lysl~a~~~v~sl~fspnr--ywL~~at~~-sIkIwdl~~~ 264 (315)
T KOG0279|consen 214 ---------------------GEAMLWDLNEG-----KNLYSLEAFDIVNSLCFSPNR--YWLCAATAT-SIKIWDLESK 264 (315)
T ss_pred ---------------------ceEEEEEccCC-----ceeEeccCCCeEeeEEecCCc--eeEeeccCC-ceEEEeccch
Confidence 34556666542 245788899999999999997 677777554 6999999987
Q ss_pred CccccccCCceeEeeeccccccCcEEEEEEecCCeEEEEEecCCCCceEEEEe
Q 000731 426 DMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGA 478 (1325)
Q Consensus 426 ~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~~~~~~~~~~~ 478 (1325)
.+..++.-...- ...+...-...+++|++||.-|..+..+ +-+.+|.+
T Consensus 265 ~~v~~l~~d~~g---~s~~~~~~~clslaws~dG~tLf~g~td--~~irv~qv 312 (315)
T KOG0279|consen 265 AVVEELKLDGIG---PSSKAGDPICLSLAWSADGQTLFAGYTD--NVIRVWQV 312 (315)
T ss_pred hhhhhccccccc---cccccCCcEEEEEEEcCCCcEEEeeecC--CcEEEEEe
Confidence 776554321110 0011112257789999999988877654 56666655
No 24
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.92 E-value=2.9e-22 Score=237.09 Aligned_cols=440 Identities=14% Similarity=0.059 Sum_probs=290.5
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEE
Q 000731 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1325)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~V~~v~~spdg~~La~as~dG~I~l 101 (1325)
.+.++++++|+..|+.++-...+..|++ .+++. +.. .+. ...++|.-++|.|.|-.|++|+.||.|++
T Consensus 64 ~ita~~l~~d~~~L~~a~rs~llrv~~L--~tgk~---irs----wKa---~He~Pvi~ma~~~~g~LlAtggaD~~v~V 131 (775)
T KOG0319|consen 64 EITALALTPDEEVLVTASRSQLLRVWSL--PTGKL---IRS----WKA---IHEAPVITMAFDPTGTLLATGGADGRVKV 131 (775)
T ss_pred hhheeeecCCccEEEEeeccceEEEEEc--ccchH---hHh----Hhh---ccCCCeEEEEEcCCCceEEeccccceEEE
Confidence 7899999999999999999998999999 45543 111 222 11368999999999999999999999999
Q ss_pred EeCCCCeEE-EeceecCcEEEEEEcCCCCe--EEEEeCCccEEEEeecCceeeeeeccccCCCceeccCccccCCCCeEE
Q 000731 102 HSVDGNATE-VVGRVEGGVRFISPSPDGDL--LGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSP 178 (1325)
Q Consensus 102 w~~~~~~~e-~vg~~~~~I~~~awSPDG~~--LA~~s~dgtV~l~s~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~ 178 (1325)
||..++.+. .+-.|.+-|.++.|.|+-.. |+++..|++|++|+-.-.. + +++.. ..|.+.+.+
T Consensus 132 Wdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~-t--cl~~~-----------~~H~S~vts 197 (775)
T KOG0319|consen 132 WDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKR-T--CLHTM-----------ILHKSAVTS 197 (775)
T ss_pred EEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCc-h--HHHHH-----------Hhhhhheee
Confidence 999887654 33335888999999999755 8889999999998632111 1 33332 256678899
Q ss_pred EEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeecCCCCceeEEEEccC-----CCeEEEEecCCC--------
Q 000731 179 ISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPS-----GANIAAVYDRKS-------- 245 (1325)
Q Consensus 179 isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~~~v~~lawsPd-----G~~IAs~~~d~~-------- 245 (1325)
+++++||..+.++ +.|+.+-|||..+-++..+.+-..+. .++.+-++ |.+|.+++....
T Consensus 198 L~~~~d~~~~ls~-------~RDkvi~vwd~~~~~~l~~lp~ye~~-E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es 269 (775)
T KOG0319|consen 198 LAFSEDSLELLSV-------GRDKVIIVWDLVQYKKLKTLPLYESL-ESVVRLREELGGKGEYIITAGGSGVVQYWDSES 269 (775)
T ss_pred eeeccCCceEEEe-------ccCcEEEEeehhhhhhhheechhhhe-eeEEEechhcCCcceEEEEecCCceEEEEeccc
Confidence 9999999888733 34689999998666655554433332 34444444 445544433210
Q ss_pred ---------C--------------------CCCCeEEEEeCCCc---------------------------------eEE
Q 000731 246 ---------E--------------------NKCPSIVFYERNGL---------------------------------ERS 263 (1325)
Q Consensus 246 ---------~--------------------~~~~~V~~~e~nGl---------------------------------~~~ 263 (1325)
+ ...+.+.|+|...+ ..+
T Consensus 270 ~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr 349 (775)
T KOG0319|consen 270 GKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELR 349 (775)
T ss_pred chhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceE
Confidence 0 00122333321110 001
Q ss_pred EEEec-------cCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeE--EEeEEEEecCCcEEEEEccCCCcE
Q 000731 264 SFDIN-------EQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWY--LKYEIRYLRRDGIRFMWHPTKPLQ 334 (1325)
Q Consensus 264 ~f~l~-------~~~~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~n~~wy--lkqel~~~~~~~~~v~Wsp~~~~~ 334 (1325)
-|+++ ..|+..|.+|.-..+|.+||+++.|. +|+||..+|..-. ..+....|.++...+..+.-++.-
T Consensus 350 ~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~---svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asf 426 (775)
T KOG0319|consen 350 LYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDK---SVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASF 426 (775)
T ss_pred EEecCCCceEEEeCchhheeeeeecccCcEEEEecCCc---eEEEEEecCCcchhhhhhhhcccccccceeeecccCccE
Confidence 11111 01245688888556679999999999 9999998553210 001112232333445554444433
Q ss_pred EEEEecCCcEEEEEE------------------------EEe--eeeCCCeeEEEEeCCEEEEeecCCcCCCCCceeeee
Q 000731 335 LICWTLDGQITTYNF------------------------IWT--TAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSL 388 (1325)
Q Consensus 335 L~~~~~~g~~~~~~~------------------------~~~--~~~~d~~~v~viDG~~l~lt~l~~~~vPpPm~~~~l 388 (1325)
+..+++|+++..+.. +.. ++|+|.-++...-+++.++|.+... .-..+|
T Consensus 427 fvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~-----~l~~vL 501 (775)
T KOG0319|consen 427 FVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQL-----RLLGVL 501 (775)
T ss_pred EEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCc-----eEEEEe
Confidence 444444444332111 011 1155555555667788888887421 223345
Q ss_pred -cCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccccccCCceeEeeeccccccCcEEEEEEecCCeEEEEEec
Q 000731 389 -KFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHH 467 (1325)
Q Consensus 389 -~~~~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~ 467 (1325)
.|...|++|.|+|.. +.+|++|.|+||+||..++..|++++.||. ..|....|..+|+.|.++..
T Consensus 502 sGH~RGvw~V~Fs~~d--q~laT~SgD~TvKIW~is~fSClkT~eGH~------------~aVlra~F~~~~~qliS~~a 567 (775)
T KOG0319|consen 502 SGHTRGVWCVSFSKND--QLLATCSGDKTVKIWSISTFSCLKTFEGHT------------SAVLRASFIRNGKQLISAGA 567 (775)
T ss_pred eCCccceEEEEecccc--ceeEeccCCceEEEEEeccceeeeeecCcc------------ceeEeeeeeeCCcEEEeccC
Confidence 488899999999998 999999999999999999999999998873 46788899999998887654
Q ss_pred CCCCceEEEEeecccCccccchhhhhhhhcccccccccccccccceeeeeecccCCcEEEEeeCCCCCceEEEEeeCCeE
Q 000731 468 GPRHSNYFRGATLNEDGLLGFYAQEIELACSEDHVQGLLTCAGWHAKVSTQIPLEGLVIAIAPNNAKKYSAFLQFHGGKI 547 (1325)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~q~~dG~v 547 (1325)
+ .-+++|+++-+. | +.+.-.++++|=++..++ ..+.++-...||+|
T Consensus 568 d--GliKlWnikt~e--------------C-----------------~~tlD~H~DrvWaL~~~~-~~~~~~tgg~Dg~i 613 (775)
T KOG0319|consen 568 D--GLIKLWNIKTNE--------------C-----------------EMTLDAHNDRVWALSVSP-LLDMFVTGGGDGRI 613 (775)
T ss_pred C--CcEEEEeccchh--------------h-----------------hhhhhhccceeEEEeecC-ccceeEecCCCeEE
Confidence 4 688999985322 1 112234577888888777 66666667889999
Q ss_pred EEEe
Q 000731 548 SEYM 551 (1325)
Q Consensus 548 ~~~~ 551 (1325)
..|.
T Consensus 614 ~~wk 617 (775)
T KOG0319|consen 614 IFWK 617 (775)
T ss_pred EEee
Confidence 9884
No 25
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.92 E-value=3.7e-22 Score=236.14 Aligned_cols=434 Identities=13% Similarity=0.094 Sum_probs=300.0
Q ss_pred EeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEEEeCC
Q 000731 26 SALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSVD 105 (1325)
Q Consensus 26 ~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~V~~v~~spdg~~La~as~dG~I~lw~~~ 105 (1325)
++|++.++.||+...+- |+..|+ .++.. . +|+. .....+.+++++..||++.|..++..+-+++|++.
T Consensus 25 ~~~s~nG~~L~t~~~d~-Vi~idv--~t~~~----~-l~s~----~~ed~d~ita~~l~~d~~~L~~a~rs~llrv~~L~ 92 (775)
T KOG0319|consen 25 VAWSSNGQHLYTACGDR-VIIIDV--ATGSI----A-LPSG----SNEDEDEITALALTPDEEVLVTASRSQLLRVWSLP 92 (775)
T ss_pred eeECCCCCEEEEecCce-EEEEEc--cCCce----e-cccC----CccchhhhheeeecCCccEEEEeeccceEEEEEcc
Confidence 89999999999999887 777887 45542 1 2222 11114789999999999999999999999999999
Q ss_pred CCeE-E-EeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeeeccccCCCceeccCccccCCCCeEEEEEec
Q 000731 106 GNAT-E-VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRG 183 (1325)
Q Consensus 106 ~~~~-e-~vg~~~~~I~~~awSPDG~~LA~~s~dgtV~l~s~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWsp 183 (1325)
++++ . ....|+++|.-++|+|-|.+||+|+.|+.|++|+- ..+.+.|. |++|.+.|+++.|.|
T Consensus 93 tgk~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi----~~~~~th~-----------fkG~gGvVssl~F~~ 157 (775)
T KOG0319|consen 93 TGKLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDI----KNGYCTHS-----------FKGHGGVVSSLLFHP 157 (775)
T ss_pred cchHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEe----eCCEEEEE-----------ecCCCceEEEEEeCC
Confidence 8764 2 45568999999999999999999999999999753 34444443 457778889999999
Q ss_pred CCcE--EEEeeccccccCCCCEEEEEECCCCce-eeeecCCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeCCCc
Q 000731 184 DGKY--FATLSEFCNSSKLHKRLKVWERDSGTL-QASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGL 260 (1325)
Q Consensus 184 DG~~--lAtvss~d~~~~~d~~irVWd~~~G~l-~~t~e~~~~~v~~lawsPdG~~IAs~~~d~~~~~~~~V~~~e~nGl 260 (1325)
+-.+ |+ ++. .|+++++||.+++.. ..+...|...+.+|+++|||..+.++++| ..+.+||.---
T Consensus 158 ~~~~~lL~-sg~------~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RD------kvi~vwd~~~~ 224 (775)
T KOG0319|consen 158 HWNRWLLA-SGA------TDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRD------KVIIVWDLVQY 224 (775)
T ss_pred ccchhhee-ecC------CCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccC------cEEEEeehhhh
Confidence 9865 44 442 368999999975655 77788899999999999999999999997 46889995110
Q ss_pred eEEEEEeccCCCCcEEEEEEccC-----CCeeEEEEccCCCCeEEEEEeeCCeeEEEe----------------------
Q 000731 261 ERSSFDINEQIDSTVELLKWNCM-----SDLLAAVVRFEEYDSVKICFFSNNHWYLKY---------------------- 313 (1325)
Q Consensus 261 ~~~~f~l~~~~~~~V~~laWSpD-----g~~LAs~~~d~~~~~VqLW~~~n~~wylkq---------------------- 313 (1325)
+ ..-++| .-..+.++.+-++ |+++.+++.++ .+|+|+........++
T Consensus 225 ~-~l~~lp--~ye~~E~vv~l~~~~~~~~~~~~TaG~~g---~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~ 298 (775)
T KOG0319|consen 225 K-KLKTLP--LYESLESVVRLREELGGKGEYIITAGGSG---VVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLL 298 (775)
T ss_pred h-hhheec--hhhheeeEEEechhcCCcceEEEEecCCc---eEEEEecccchhhhhhccCCchhhhcceeccccCceEE
Confidence 0 001222 2235777777777 77888888888 8999987654332211
Q ss_pred -----EEEEe--------------cCCcEEE-EEccCCCcEEEEEecCCcEEE---------------------------
Q 000731 314 -----EIRYL--------------RRDGIRF-MWHPTKPLQLICWTLDGQITT--------------------------- 346 (1325)
Q Consensus 314 -----el~~~--------------~~~~~~v-~Wsp~~~~~L~~~~~~g~~~~--------------------------- 346 (1325)
++-+- .++...+ -|-|+... |++.+.++.+..
T Consensus 299 vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~-laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g 377 (775)
T KOG0319|consen 299 VTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESH-LAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSG 377 (775)
T ss_pred EEccceEEEEEccccEEehhhcCCchhheeeeecCCccce-EEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccC
Confidence 11100 0001111 23343322 333333332221
Q ss_pred ----------EEEEEeee--------------------------eCCCeeEEEEeCCEEEEeecCC--cCCCCCce--ee
Q 000731 347 ----------YNFIWTTA--------------------------VMENSTALVIDGSKILVTPLSL--SLMPPPMY--LF 386 (1325)
Q Consensus 347 ----------~~~~~~~~--------------------------~~d~~~v~viDG~~l~lt~l~~--~~vPpPm~--~~ 386 (1325)
.-..|..+ -.....+.|..+.++++|++.. ..-+|+.- .+
T Consensus 378 ~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~ 457 (775)
T KOG0319|consen 378 DLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRY 457 (775)
T ss_pred cEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhH
Confidence 11234321 0112356677788999999976 22223221 11
Q ss_pred e-ecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccccccCCceeEeeeccccccCcEEEEEEecCCeEEEEE
Q 000731 387 S-LKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVS 465 (1325)
Q Consensus 387 ~-l~~~~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~ 465 (1325)
+ ..|+.-|++|+.+|+. ..+|+++.|.+.+||+++.....+++.|| ...|+++.|+|.++++|++
T Consensus 458 t~~aHdKdIN~Vaia~nd--kLiAT~SqDktaKiW~le~~~l~~vLsGH------------~RGvw~V~Fs~~dq~laT~ 523 (775)
T KOG0319|consen 458 TERAHDKDINCVAIAPND--KLIATGSQDKTAKIWDLEQLRLLGVLSGH------------TRGVWCVSFSKNDQLLATC 523 (775)
T ss_pred HHHhhcccccceEecCCC--ceEEecccccceeeecccCceEEEEeeCC------------ccceEEEEeccccceeEec
Confidence 1 2488899999999998 89999999999999999855445455554 4589999999999999999
Q ss_pred ecCCCCceEEEEeecccCccccchhhhhhhhcccccccccccccccceeeeeecccCCcEEEEeeCCCCCceEEEEeeCC
Q 000731 466 HHGPRHSNYFRGATLNEDGLLGFYAQEIELACSEDHVQGLLTCAGWHAKVSTQIPLEGLVIAIAPNNAKKYSAFLQFHGG 545 (1325)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~q~~dG 545 (1325)
+.+ .++++|.+.- . .| ..+.-++...|....+-. ++..++....||
T Consensus 524 SgD--~TvKIW~is~-f-------------SC-----------------lkT~eGH~~aVlra~F~~-~~~qliS~~adG 569 (775)
T KOG0319|consen 524 SGD--KTVKIWSIST-F-------------SC-----------------LKTFEGHTSAVLRASFIR-NGKQLISAGADG 569 (775)
T ss_pred cCC--ceEEEEEecc-c-------------ee-----------------eeeecCccceeEeeeeee-CCcEEEeccCCC
Confidence 877 6899998831 0 00 112223445566555544 678888899999
Q ss_pred eEEEEeccc
Q 000731 546 KISEYMSRV 554 (1325)
Q Consensus 546 ~v~~~~~~~ 554 (1325)
-+-.|+...
T Consensus 570 liKlWnikt 578 (775)
T KOG0319|consen 570 LIKLWNIKT 578 (775)
T ss_pred cEEEEeccc
Confidence 999997643
No 26
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.92 E-value=4e-22 Score=235.41 Aligned_cols=376 Identities=15% Similarity=0.131 Sum_probs=272.3
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEE
Q 000731 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1325)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~V~~v~~spdg~~La~as~dG~I~l 101 (1325)
.++.+-||..|..+.++|.|..|+.||+ ....+-.+ +++| .+.|+.+-|+-+...|++.+.|+.|++
T Consensus 109 AVt~l~fd~~G~rlaSGskDt~IIvwDl--V~E~Gl~r-------L~GH----kd~iT~~~F~~~~~~lvS~sKDs~iK~ 175 (888)
T KOG0306|consen 109 AVTTLKFDKIGTRLASGSKDTDIIVWDL--VGEEGLFR-------LRGH----KDSITQALFLNGDSFLVSVSKDSMIKF 175 (888)
T ss_pred ceEEEEEcccCceEeecCCCccEEEEEe--ccceeeEE-------eecc----hHHHhHHhccCCCeEEEEeccCceEEE
Confidence 5777889999999999999999999999 44443222 5666 468999999998899999999999999
Q ss_pred EeCCCCeE-EEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCce--------ee--------------eeecccc
Q 000731 102 HSVDGNAT-EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDL--------LY--------------ENPLEEL 158 (1325)
Q Consensus 102 w~~~~~~~-e~vg~~~~~I~~~awSPDG~~LA~~s~dgtV~l~s~~~d~--------~~--------------e~~l~~~ 158 (1325)
||++++.+ +..-.|.+.|+++++.+ +.+++++.|+.+++|.-.++. ++ +..+..+
T Consensus 176 WdL~tqhCf~Thvd~r~Eiw~l~~~~--~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d 253 (888)
T KOG0306|consen 176 WDLETQHCFETHVDHRGEIWALVLDE--KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTD 253 (888)
T ss_pred EecccceeeeEEecccceEEEEEEec--ceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeec
Confidence 99999876 33334588899999998 789999999999999652210 00 0000000
Q ss_pred CCCceec-------------------------------------------------------------------------
Q 000731 159 AEGFDVH------------------------------------------------------------------------- 165 (1325)
Q Consensus 159 ~~~~~Vs------------------------------------------------------------------------- 165 (1325)
....++.
T Consensus 254 ~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~ 333 (888)
T KOG0306|consen 254 FSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGG 333 (888)
T ss_pred CcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCC
Confidence 0000000
Q ss_pred -c-------------------------------CccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCc
Q 000731 166 -E-------------------------------PELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGT 213 (1325)
Q Consensus 166 -~-------------------------------tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~ 213 (1325)
+ ..+.+|-..|.++++|.|...++ ++ +.+.|+|||+.+++
T Consensus 334 ~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~-Sg-------a~~SikiWn~~t~k 405 (888)
T KOG0306|consen 334 TENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLA-SG-------AGESIKIWNRDTLK 405 (888)
T ss_pred cceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeee-ec-------CCCcEEEEEccCcc
Confidence 0 00114566678888888887777 43 24789999997777
Q ss_pred eeeeec----------------------------------------CCCCceeEEEEccCCCeEEEEecCCCCCCCCeEE
Q 000731 214 LQASSE----------------------------------------LKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIV 253 (1325)
Q Consensus 214 l~~t~e----------------------------------------~~~~~v~~lawsPdG~~IAs~~~d~~~~~~~~V~ 253 (1325)
++.|.+ .|+|.+++++-+|||...++++.| .+|+
T Consensus 406 ciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saD------ktVk 479 (888)
T KOG0306|consen 406 CIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSAD------KTVK 479 (888)
T ss_pred eeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCC------cEEE
Confidence 655432 356778999999999999999986 5699
Q ss_pred EEeC------CCceEEEEEec----cCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeEEEeEEEEecCCcE
Q 000731 254 FYER------NGLERSSFDIN----EQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGI 323 (1325)
Q Consensus 254 ~~e~------nGl~~~~f~l~----~~~~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~n~~wylkqel~~~~~~~~ 323 (1325)
||+- +|.+..-..+. ..-+..|.++++||||++||++.-|. ||+++.+.+...|+ .+.+|.-...
T Consensus 480 fWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdn---TVkVyflDtlKFfl--sLYGHkLPV~ 554 (888)
T KOG0306|consen 480 FWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDN---TVKVYFLDTLKFFL--SLYGHKLPVL 554 (888)
T ss_pred EEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccC---eEEEEEecceeeee--eeccccccee
Confidence 9972 34433222221 11245799999999999999999999 99999999977665 4555432337
Q ss_pred EEEEccCCCcEEEEEecCCcEEEEEEEEeeeeCCCeeEEEEeCCEEEEeecCCcCCCCCceeeee-cCCCCEEEEEEecC
Q 000731 324 RFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSL-KFPTAVTEMAFYSK 402 (1325)
Q Consensus 324 ~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDG~~l~lt~l~~~~vPpPm~~~~l-~~~~~V~~VaFSpd 402 (1325)
++.-|||+.. +..++ .+++|++|-+.=+ -|++++ .|++.|.+|-|-|+
T Consensus 555 smDIS~DSkl-ivTgS-------------------------ADKnVKiWGLdFG-----DCHKS~fAHdDSvm~V~F~P~ 603 (888)
T KOG0306|consen 555 SMDISPDSKL-IVTGS-------------------------ADKNVKIWGLDFG-----DCHKSFFAHDDSVMSVQFLPK 603 (888)
T ss_pred EEeccCCcCe-EEecc-------------------------CCCceEEeccccc-----hhhhhhhcccCceeEEEEccc
Confidence 7777787764 22222 2345666654322 366666 69999999999998
Q ss_pred CCCCEEEEEECCCcEEEEeCCCCCccccccCCceeEeeeccccccCcEEEEEEecCCeEEEEEecCCCCceEEEEe
Q 000731 403 SSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGA 478 (1325)
Q Consensus 403 g~~~~LAs~s~Dgti~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~~~~~~~~~~~ 478 (1325)
. ..+.+++.||.|+-||-....+.+.+.|| ...++.++-+|+|.++++++++ .++.+|..
T Consensus 604 ~--~~FFt~gKD~kvKqWDg~kFe~iq~L~~H------------~~ev~cLav~~~G~~vvs~shD--~sIRlwE~ 663 (888)
T KOG0306|consen 604 T--HLFFTCGKDGKVKQWDGEKFEEIQKLDGH------------HSEVWCLAVSPNGSFVVSSSHD--KSIRLWER 663 (888)
T ss_pred c--eeEEEecCcceEEeechhhhhhheeeccc------------hheeeeeEEcCCCCeEEeccCC--ceeEeeec
Confidence 7 78999999999999998876666666664 3479999999999999988876 57788875
No 27
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.91 E-value=1.3e-23 Score=251.36 Aligned_cols=245 Identities=14% Similarity=0.155 Sum_probs=196.0
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEeccccccc-----ccceeeccc---cc----------------cccccCCCCCC
Q 000731 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNE-----RASIKTAIS---AE----------------IEHIDLEPGDS 77 (1325)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~-----~~~~~~~l~---~~----------------l~~~~~~~~~~ 77 (1325)
.+.|..|..|+-.+.++..|+.|+.|.+. ..+ ....+..++ ++ +.+| .+.
T Consensus 380 ~v~ca~fSddssmlA~Gf~dS~i~~~Sl~--p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH----~GP 453 (707)
T KOG0263|consen 380 GVTCAEFSDDSSMLACGFVDSSVRVWSLT--PKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGH----SGP 453 (707)
T ss_pred cceeEeecCCcchhhccccccEEEEEecc--hhhhccccchhhhccccccccchhhhhccccCCceeEEeecC----CCc
Confidence 56777788888888888888889999983 211 000111111 00 2223 588
Q ss_pred EEEEEEccCCCEEEEEECCCcEEEEeCCCCeEE-EeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeeecc
Q 000731 78 ITAFDYLMEKEALIVGTSSGLLLLHSVDGNATE-VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLE 156 (1325)
Q Consensus 78 V~~v~~spdg~~La~as~dG~I~lw~~~~~~~e-~vg~~~~~I~~~awSPDG~~LA~~s~dgtV~l~s~~~d~~~e~~l~ 156 (1325)
|.+..|+||.+.|+++|+|++|+||++++..+- ....|..+|+.+.|+|-|=+.|++|.|+|-.+|+.+- ..++.
T Consensus 454 Vyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~----~~PlR 529 (707)
T KOG0263|consen 454 VYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDH----NKPLR 529 (707)
T ss_pred eeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeeccc----CCchh
Confidence 999999999999999999999999999986543 3334688999999999999999999999999987542 22222
Q ss_pred ccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeecCCCCceeEEEEccCCCe
Q 000731 157 ELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGAN 236 (1325)
Q Consensus 157 ~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~~~v~~lawsPdG~~ 236 (1325)
-|.+|-..+.+++|.|++.|+| .+| .|++||+||..+|.....+.+|.+.|.+|+|||+|++
T Consensus 530 -----------ifaghlsDV~cv~FHPNs~Y~a-TGS------sD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~ 591 (707)
T KOG0263|consen 530 -----------IFAGHLSDVDCVSFHPNSNYVA-TGS------SDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRY 591 (707)
T ss_pred -----------hhcccccccceEEECCcccccc-cCC------CCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCce
Confidence 2446777889999999999999 554 3699999999999999999999999999999999999
Q ss_pred EEEEecCCCCCCCCeEEEEeC-CCceEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeC
Q 000731 237 IAAVYDRKSENKCPSIVFYER-NGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSN 306 (1325)
Q Consensus 237 IAs~~~d~~~~~~~~V~~~e~-nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~n 306 (1325)
||||+.+ +.|.+||. +|.+..++ .+| ++.|.+|.||.||.+||+++.|. +|++||+..
T Consensus 592 LaSg~ed------~~I~iWDl~~~~~v~~l--~~H-t~ti~SlsFS~dg~vLasgg~Dn---sV~lWD~~~ 650 (707)
T KOG0263|consen 592 LASGDED------GLIKIWDLANGSLVKQL--KGH-TGTIYSLSFSRDGNVLASGGADN---SVRLWDLTK 650 (707)
T ss_pred EeecccC------CcEEEEEcCCCcchhhh--hcc-cCceeEEEEecCCCEEEecCCCC---eEEEEEchh
Confidence 9999985 57999994 56666543 344 78899999999999999999998 999999864
No 28
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.91 E-value=6.8e-22 Score=212.87 Aligned_cols=284 Identities=15% Similarity=0.158 Sum_probs=214.5
Q ss_pred cccccCCCCCCEEEEEEccCCCEEEEEECCCcEEEEeCCC-CeEEEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEee
Q 000731 67 IEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSVDG-NATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTH 145 (1325)
Q Consensus 67 l~~~~~~~~~~V~~v~~spdg~~La~as~dG~I~lw~~~~-~~~e~vg~~~~~I~~~awSPDG~~LA~~s~dgtV~l~s~ 145 (1325)
|++| .++|.+++|++|++.|+++|.||.+++||.-| .+...+.--..+|.+.||||.|+.+|.|+-|+...|+.-
T Consensus 51 LkGH----~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~l 126 (343)
T KOG0286|consen 51 LKGH----LNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPL 126 (343)
T ss_pred eccc----ccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEec
Confidence 6666 47999999999999999999999999999865 455444444678999999999999999999998877642
Q ss_pred cCceeeeeeccccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeecCCCCce
Q 000731 146 DWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMG 225 (1325)
Q Consensus 146 ~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~~~v 225 (1325)
...-. +....| ...+.+|.+.+.+..|-+|++.+- .| +|.+.-+||.++|+....+.+|.+-|
T Consensus 127 s~~d~--------~g~~~v-~r~l~gHtgylScC~f~dD~~ilT-~S-------GD~TCalWDie~g~~~~~f~GH~gDV 189 (343)
T KOG0286|consen 127 STRDA--------EGNVRV-SRELAGHTGYLSCCRFLDDNHILT-GS-------GDMTCALWDIETGQQTQVFHGHTGDV 189 (343)
T ss_pred ccccc--------ccccee-eeeecCccceeEEEEEcCCCceEe-cC-------CCceEEEEEcccceEEEEecCCcccE
Confidence 21100 000111 123447778889999999998764 32 57899999999999999999999999
Q ss_pred eEEEEcc-CCCeEEEEecCCCCCCCCeEEEEe-CCCceEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEE
Q 000731 226 AVLEWMP-SGANIAAVYDRKSENKCPSIVFYE-RNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICF 303 (1325)
Q Consensus 226 ~~lawsP-dG~~IAs~~~d~~~~~~~~V~~~e-~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~ 303 (1325)
-+|+++| +++..+||+.|+ ..++|| |.|.-.+.| ++ ++..|++|.|-|+|.-+|+++.|+ +.+++|
T Consensus 190 ~slsl~p~~~ntFvSg~cD~------~aklWD~R~~~c~qtF--~g-hesDINsv~ffP~G~afatGSDD~---tcRlyD 257 (343)
T KOG0286|consen 190 MSLSLSPSDGNTFVSGGCDK------SAKLWDVRSGQCVQTF--EG-HESDINSVRFFPSGDAFATGSDDA---TCRLYD 257 (343)
T ss_pred EEEecCCCCCCeEEeccccc------ceeeeeccCcceeEee--cc-cccccceEEEccCCCeeeecCCCc---eeEEEe
Confidence 9999999 999999999875 588999 566444444 33 366799999999999999999999 999999
Q ss_pred eeCCeeEEEeEEE-EecC---Cc-EEEEEccCCCcEEEEEecCCcEEEEEEEEeeeeCCCeeEEEEeCCEEEEeecCCcC
Q 000731 304 FSNNHWYLKYEIR-YLRR---DG-IRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSL 378 (1325)
Q Consensus 304 ~~n~~wylkqel~-~~~~---~~-~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDG~~l~lt~l~~~~ 378 (1325)
+...+ ++. |.+. .+ +++.||..+.+ |..+..+.... +|++- -|.++
T Consensus 258 lRaD~-----~~a~ys~~~~~~gitSv~FS~SGRl-Lfagy~d~~c~----vWDtl----------k~e~v--------- 308 (343)
T KOG0286|consen 258 LRADQ-----ELAVYSHDSIICGITSVAFSKSGRL-LFAGYDDFTCN----VWDTL----------KGERV--------- 308 (343)
T ss_pred ecCCc-----EEeeeccCcccCCceeEEEcccccE-EEeeecCCcee----Eeecc----------ccceE---------
Confidence 87643 333 3221 23 78889877654 44433333332 34322 11111
Q ss_pred CCCCceeeee-cCCCCEEEEEEecCCCCCEEEEEECCCcEEEEe
Q 000731 379 MPPPMYLFSL-KFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVD 421 (1325)
Q Consensus 379 vPpPm~~~~l-~~~~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~ 421 (1325)
-.| .|.+.|.++..+||| ..+|+++.|.+++||.
T Consensus 309 -------g~L~GHeNRvScl~~s~DG--~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 309 -------GVLAGHENRVSCLGVSPDG--MAVATGSWDSTLRIWA 343 (343)
T ss_pred -------EEeeccCCeeEEEEECCCC--cEEEecchhHheeecC
Confidence 112 589999999999999 8999999999999994
No 29
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.91 E-value=3.2e-22 Score=226.58 Aligned_cols=327 Identities=15% Similarity=0.165 Sum_probs=240.7
Q ss_pred CCCEEEEEEccCCC-EEEEEECCCcEEEEeCCC--CeEE----------Eece---ecCcEEEEEEcCCCCeEEEEeCCc
Q 000731 75 GDSITAFDYLMEKE-ALIVGTSSGLLLLHSVDG--NATE----------VVGR---VEGGVRFISPSPDGDLLGVTTGFG 138 (1325)
Q Consensus 75 ~~~V~~v~~spdg~-~La~as~dG~I~lw~~~~--~~~e----------~vg~---~~~~I~~~awSPDG~~LA~~s~dg 138 (1325)
...|...+|.|-.+ .|++++.|-+.++|++.. ...+ .-|. -...|++++||.||..||+|+.||
T Consensus 178 ~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~~G 257 (524)
T KOG0273|consen 178 ESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSEDG 257 (524)
T ss_pred CCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEeecCc
Confidence 35699999999887 899999999999999853 1111 0111 125699999999999999999999
Q ss_pred cEEEEeecCceeeeeeccccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeee
Q 000731 139 QILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASS 218 (1325)
Q Consensus 139 tV~l~s~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~ 218 (1325)
.+++|+.++..+.... .|.++|.++.|+++|.||+ ++++ |+++-+||.-+|+..+.+
T Consensus 258 ~~riw~~~G~l~~tl~----------------~HkgPI~slKWnk~G~yil-S~~v------D~ttilwd~~~g~~~q~f 314 (524)
T KOG0273|consen 258 EARIWNKDGNLISTLG----------------QHKGPIFSLKWNKKGTYIL-SGGV------DGTTILWDAHTGTVKQQF 314 (524)
T ss_pred EEEEEecCchhhhhhh----------------ccCCceEEEEEcCCCCEEE-eccC------CccEEEEeccCceEEEee
Confidence 9999998887665443 3456789999999999999 6654 589999999899998888
Q ss_pred cCCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeCCCceEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCe
Q 000731 219 ELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDS 298 (1325)
Q Consensus 219 e~~~~~v~~lawsPdG~~IAs~~~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~ 298 (1325)
+-|....-.|.|.-+-. +|+++-| ..|.++-..+.+-- -++.+ |.+.|..|.|+|.|.+||+++.|+ |
T Consensus 315 ~~~s~~~lDVdW~~~~~-F~ts~td------~~i~V~kv~~~~P~-~t~~G-H~g~V~alk~n~tg~LLaS~SdD~---T 382 (524)
T KOG0273|consen 315 EFHSAPALDVDWQSNDE-FATSSTD------GCIHVCKVGEDRPV-KTFIG-HHGEVNALKWNPTGSLLASCSDDG---T 382 (524)
T ss_pred eeccCCccceEEecCce-EeecCCC------ceEEEEEecCCCcc-eeeec-ccCceEEEEECCCCceEEEecCCC---e
Confidence 87777666789987765 4555543 46777754433221 12223 568899999999999999999999 9
Q ss_pred EEEEEeeCCeeEEEeEEEEecCCcEEEEEccCCCcEEEEEecCCcEEEEEEEEeeeeCCCeeEEEEeCCEEEEeecCCcC
Q 000731 299 VKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSL 378 (1325)
Q Consensus 299 VqLW~~~n~~wylkqel~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDG~~l~lt~l~~~~ 378 (1325)
++||++++... -+.+..|.++...+.|+|+++- + +
T Consensus 383 lkiWs~~~~~~--~~~l~~Hskei~t~~wsp~g~v-----~--~------------------------------------ 417 (524)
T KOG0273|consen 383 LKIWSMGQSNS--VHDLQAHSKEIYTIKWSPTGPV-----T--S------------------------------------ 417 (524)
T ss_pred eEeeecCCCcc--hhhhhhhccceeeEeecCCCCc-----c--C------------------------------------
Confidence 99999875321 1234444445577888887763 0 0
Q ss_pred CCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccccccCCceeEeeeccccccCcEEEEEEecC
Q 000731 379 MPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGS 458 (1325)
Q Consensus 379 vPpPm~~~~l~~~~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d 458 (1325)
.| -++ .+||+++.|++|++|+...+.++.++.+ |...|..++|+|+
T Consensus 418 --n~------------------~~~--~~l~sas~dstV~lwdv~~gv~i~~f~k------------H~~pVysvafS~~ 463 (524)
T KOG0273|consen 418 --NP------------------NMN--LMLASASFDSTVKLWDVESGVPIHTLMK------------HQEPVYSVAFSPN 463 (524)
T ss_pred --CC------------------cCC--ceEEEeecCCeEEEEEccCCceeEeecc------------CCCceEEEEecCC
Confidence 01 122 5899999999999999987766644433 3457999999999
Q ss_pred CeEEEEEecCCCCceEEEEeecccCccccchhhhhhhhcccccccccccccccceeeeeecccCCcEEEEeeCCCCCceE
Q 000731 459 HLLLSVSHHGPRHSNYFRGATLNEDGLLGFYAQEIELACSEDHVQGLLTCAGWHAKVSTQIPLEGLVIAIAPNNAKKYSA 538 (1325)
Q Consensus 459 ~~lla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 538 (1325)
|+++|+++-+ ..+.+|.... ..+-+...-.+-|..+++|. .++.+
T Consensus 464 g~ylAsGs~d--g~V~iws~~~--------------------------------~~l~~s~~~~~~Ifel~Wn~-~G~kl 508 (524)
T KOG0273|consen 464 GRYLASGSLD--GCVHIWSTKT--------------------------------GKLVKSYQGTGGIFELCWNA-AGDKL 508 (524)
T ss_pred CcEEEecCCC--CeeEeccccc--------------------------------hheeEeecCCCeEEEEEEcC-CCCEE
Confidence 9999998765 5777776531 11122333456688899998 77888
Q ss_pred EEEeeCCeEEEE
Q 000731 539 FLQFHGGKISEY 550 (1325)
Q Consensus 539 ~~q~~dG~v~~~ 550 (1325)
.+...||.|...
T Consensus 509 ~~~~sd~~vcvl 520 (524)
T KOG0273|consen 509 GACASDGSVCVL 520 (524)
T ss_pred EEEecCCCceEE
Confidence 888888877655
No 30
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.90 E-value=3.1e-21 Score=214.56 Aligned_cols=277 Identities=18% Similarity=0.259 Sum_probs=204.7
Q ss_pred CCCEEEEEEccCCCEEEEEECCCcEEEEeCCCCeE-EEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecC-ceeee
Q 000731 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNAT-EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDW-DLLYE 152 (1325)
Q Consensus 75 ~~~V~~v~~spdg~~La~as~dG~I~lw~~~~~~~-e~vg~~~~~I~~~awSPDG~~LA~~s~dgtV~l~s~~~-d~~~e 152 (1325)
.+.|.++.|+|+++.|++++.+|.|.+|+..++.. .....|...|.++.|+|+++.|++++.||+|.+|+..- ..+..
T Consensus 9 ~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~ 88 (289)
T cd00200 9 TGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRT 88 (289)
T ss_pred CCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEE
Confidence 36899999999999999999999999999987643 34444578899999999999999999999999986432 12111
Q ss_pred eeccccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeecCCCCceeEEEEcc
Q 000731 153 NPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMP 232 (1325)
Q Consensus 153 ~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~~~v~~lawsP 232 (1325)
+..|...+.++.|+|++++++ +++ .++.+++||..+++.......+.+.+.+++|+|
T Consensus 89 ----------------~~~~~~~i~~~~~~~~~~~~~-~~~------~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 145 (289)
T cd00200 89 ----------------LTGHTSYVSSVAFSPDGRILS-SSS------RDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSP 145 (289)
T ss_pred ----------------EeccCCcEEEEEEcCCCCEEE-Eec------CCCeEEEEECCCcEEEEEeccCCCcEEEEEEcC
Confidence 123445789999999999888 543 258999999977888888888888899999999
Q ss_pred CCCeEEEEecCCCCCCCCeEEEEeCC-CceEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeEE
Q 000731 233 SGANIAAVYDRKSENKCPSIVFYERN-GLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYL 311 (1325)
Q Consensus 233 dG~~IAs~~~d~~~~~~~~V~~~e~n-Gl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~n~~wyl 311 (1325)
++.+|++++.+ +.|.+|+.+ +.....+. .+...|.+++|+|+|+.|++++.++ .|++|+......
T Consensus 146 ~~~~l~~~~~~------~~i~i~d~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~~~---~i~i~d~~~~~~-- 211 (289)
T cd00200 146 DGTFVASSSQD------GTIKLWDLRTGKCVATLT---GHTGEVNSVAFSPDGEKLLSSSSDG---TIKLWDLSTGKC-- 211 (289)
T ss_pred cCCEEEEEcCC------CcEEEEEccccccceeEe---cCccccceEEECCCcCEEEEecCCC---cEEEEECCCCce--
Confidence 99999998753 569999965 33333332 2345799999999999999998887 899999976432
Q ss_pred EeEEEEecCCcEEEEEccCCCcEEEEEecCCcEEEEEEEEeeeeCCCeeEEEEeCCEEEEeecCCcCCCCCceeeee-cC
Q 000731 312 KYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSL-KF 390 (1325)
Q Consensus 312 kqel~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDG~~l~lt~l~~~~vPpPm~~~~l-~~ 390 (1325)
...+..+......+.|+|++. .+.....+|.+. +|+.. .+..+ ..+ .+
T Consensus 212 ~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~i~----i~~~~----------~~~~~----------------~~~~~~ 260 (289)
T cd00200 212 LGTLRGHENGVNSVAFSPDGY-LLASGSEDGTIR----VWDLR----------TGECV----------------QTLSGH 260 (289)
T ss_pred ecchhhcCCceEEEEEcCCCc-EEEEEcCCCcEE----EEEcC----------CceeE----------------EEcccc
Confidence 223323222337788998843 233333355543 22221 01111 112 35
Q ss_pred CCCEEEEEEecCCCCCEEEEEECCCcEEEEe
Q 000731 391 PTAVTEMAFYSKSSKNCLAAILSDGCLCVVD 421 (1325)
Q Consensus 391 ~~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~ 421 (1325)
...|.+++|+|++ +.|++++.||.|++|+
T Consensus 261 ~~~i~~~~~~~~~--~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 261 TNSVTSLAWSPDG--KRLASGSADGTIRIWD 289 (289)
T ss_pred CCcEEEEEECCCC--CEEEEecCCCeEEecC
Confidence 6789999999998 8999999999999996
No 31
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.90 E-value=2.6e-21 Score=252.52 Aligned_cols=293 Identities=11% Similarity=0.055 Sum_probs=206.0
Q ss_pred CCCEEEEEEccCCCEEEEEECCCcEEEEeCCCC----e-----EEEeceecCcEEEEEEcC-CCCeEEEEeCCccEEEEe
Q 000731 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDGN----A-----TEVVGRVEGGVRFISPSP-DGDLLGVTTGFGQILVMT 144 (1325)
Q Consensus 75 ~~~V~~v~~spdg~~La~as~dG~I~lw~~~~~----~-----~e~vg~~~~~I~~~awSP-DG~~LA~~s~dgtV~l~s 144 (1325)
.+.|.+++|+|+|+.||+|+.||+|+||+..+. . ..... +...|.+++|+| ++.+||+++.||+|++|+
T Consensus 483 ~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd 561 (793)
T PLN00181 483 SNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVVQVWD 561 (793)
T ss_pred CCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeEEEEE
Confidence 568999999999999999999999999997531 1 11122 246799999987 488999999999999986
Q ss_pred ec-CceeeeeeccccCCCceeccCccccCCCCeEEEEEec-CCcEEEEeeccccccCCCCEEEEEECCCCceeeeecCCC
Q 000731 145 HD-WDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRG-DGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKA 222 (1325)
Q Consensus 145 ~~-~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWsp-DG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~ 222 (1325)
.. +..+. .+.+|.+.|.+++|+| ||.+|+ +++ .|++|+|||..+|....+...+
T Consensus 562 ~~~~~~~~----------------~~~~H~~~V~~l~~~p~~~~~L~-Sgs------~Dg~v~iWd~~~~~~~~~~~~~- 617 (793)
T PLN00181 562 VARSQLVT----------------EMKEHEKRVWSIDYSSADPTLLA-SGS------DDGSVKLWSINQGVSIGTIKTK- 617 (793)
T ss_pred CCCCeEEE----------------EecCCCCCEEEEEEcCCCCCEEE-EEc------CCCEEEEEECCCCcEEEEEecC-
Confidence 32 22211 2235677899999996 899999 554 3689999999889888877644
Q ss_pred CceeEEEE-ccCCCeEEEEecCCCCCCCCeEEEEeCCCceEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEE
Q 000731 223 FMGAVLEW-MPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKI 301 (1325)
Q Consensus 223 ~~v~~law-sPdG~~IAs~~~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~VqL 301 (1325)
..+.+++| +|+|++||+|+.| +.|.+|+..........+.. +...|..++|+ |+..|++++.|+ +|+|
T Consensus 618 ~~v~~v~~~~~~g~~latgs~d------g~I~iwD~~~~~~~~~~~~~-h~~~V~~v~f~-~~~~lvs~s~D~---~iki 686 (793)
T PLN00181 618 ANICCVQFPSESGRSLAFGSAD------HKVYYYDLRNPKLPLCTMIG-HSKTVSYVRFV-DSSTLVSSSTDN---TLKL 686 (793)
T ss_pred CCeEEEEEeCCCCCEEEEEeCC------CeEEEEECCCCCccceEecC-CCCCEEEEEEe-CCCEEEEEECCC---EEEE
Confidence 56789999 4679999999985 57999995322211122332 35679999997 788999999999 9999
Q ss_pred EEeeCC----eeEEEeEEEEecCCcEEEEEccCCCcEEEEEecCCcEEEEEEEEeeeeCCCeeEEEEeCCEEEEeecCCc
Q 000731 302 CFFSNN----HWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLS 377 (1325)
Q Consensus 302 W~~~n~----~wylkqel~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDG~~l~lt~l~~~ 377 (1325)
|++... .|.....+..+......+.|+|++.. |++++.+|.+. +|+.... ..+..+.+...
T Consensus 687 Wd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~-lasgs~D~~v~----iw~~~~~----------~~~~s~~~~~~ 751 (793)
T PLN00181 687 WDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGY-IATGSETNEVF----VYHKAFP----------MPVLSYKFKTI 751 (793)
T ss_pred EeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCE-EEEEeCCCEEE----EEECCCC----------CceEEEecccC
Confidence 998632 23233344444333477899998764 77777788764 4443210 11111112111
Q ss_pred CCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeC
Q 000731 378 LMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDL 422 (1325)
Q Consensus 378 ~vPpPm~~~~l~~~~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~~ 422 (1325)
...+.+. .-.+...|.+|+|+|++ +.|++++.||+|++|++
T Consensus 752 ~~~~~~~--~~~~~~~V~~v~ws~~~--~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 752 DPVSGLE--VDDASQFISSVCWRGQS--STLVAANSTGNIKILEM 792 (793)
T ss_pred Ccccccc--cCCCCcEEEEEEEcCCC--CeEEEecCCCcEEEEec
Confidence 1000010 11245679999999999 89999999999999985
No 32
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.90 E-value=8.6e-23 Score=244.38 Aligned_cols=238 Identities=16% Similarity=0.181 Sum_probs=197.0
Q ss_pred CCCEEEEEEccCCCEEEEEECCCcEEEEeCCC--------------------------------CeEE-EeceecCcEEE
Q 000731 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDG--------------------------------NATE-VVGRVEGGVRF 121 (1325)
Q Consensus 75 ~~~V~~v~~spdg~~La~as~dG~I~lw~~~~--------------------------------~~~e-~vg~~~~~I~~ 121 (1325)
...+++..|++|+..||.|..|-.|++|++.. +..+ ..| |.+.|..
T Consensus 378 ~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~G-H~GPVyg 456 (707)
T KOG0263|consen 378 YQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYG-HSGPVYG 456 (707)
T ss_pred CCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeec-CCCceee
Confidence 35789999999999999999999999998751 1122 355 5999999
Q ss_pred EEEcCCCCeEEEEeCCccEEEEee-cCceeeeeeccccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCC
Q 000731 122 ISPSPDGDLLGVTTGFGQILVMTH-DWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKL 200 (1325)
Q Consensus 122 ~awSPDG~~LA~~s~dgtV~l~s~-~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~ 200 (1325)
.+||||-+.|+++|+|++|++|+. .|..+.. +++|...|+.+.|+|-|.||| +++ .
T Consensus 457 ~sFsPd~rfLlScSED~svRLWsl~t~s~~V~----------------y~GH~~PVwdV~F~P~GyYFa-tas------~ 513 (707)
T KOG0263|consen 457 CSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVI----------------YKGHLAPVWDVQFAPRGYYFA-TAS------H 513 (707)
T ss_pred eeecccccceeeccCCcceeeeecccceeEEE----------------ecCCCcceeeEEecCCceEEE-ecC------C
Confidence 999999999999999999999974 3332211 235667789999999999999 554 3
Q ss_pred CCEEEEEECCCCceeeeecCCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEEEe-CCCceEEEEEeccCCCCcEEEEE
Q 000731 201 HKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYE-RNGLERSSFDINEQIDSTVELLK 279 (1325)
Q Consensus 201 d~~irVWd~~~G~l~~t~e~~~~~v~~lawsPdG~~IAs~~~d~~~~~~~~V~~~e-~nGl~~~~f~l~~~~~~~V~~la 279 (1325)
|++-|+|..+.-.....+.+|-+-+.+++|+|+++++|+||.| .+|++|+ .+|...+.|+ + |.+.|.+|+
T Consensus 514 D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD------~tVRlWDv~~G~~VRiF~--G-H~~~V~al~ 584 (707)
T KOG0263|consen 514 DQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSD------RTVRLWDVSTGNSVRIFT--G-HKGPVTALA 584 (707)
T ss_pred CceeeeeecccCCchhhhcccccccceEEECCcccccccCCCC------ceEEEEEcCCCcEEEEec--C-CCCceEEEE
Confidence 6899999998888888999999999999999999999999986 5799999 5677766663 3 467899999
Q ss_pred EccCCCeeEEEEccCCCCeEEEEEeeCCeeEEEeEEEEecCCcEEEEEccCCCcEEEEEecCCcEEEEEEEEeeeeCCCe
Q 000731 280 WNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENS 359 (1325)
Q Consensus 280 WSpDg~~LAs~~~d~~~~~VqLW~~~n~~wylkqel~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~ 359 (1325)
|||+|.+||+|+.|+ .|+|||+.+..- + ++
T Consensus 585 ~Sp~Gr~LaSg~ed~---~I~iWDl~~~~~---------------------------v----~~---------------- 614 (707)
T KOG0263|consen 585 FSPCGRYLASGDEDG---LIKIWDLANGSL---------------------------V----KQ---------------- 614 (707)
T ss_pred EcCCCceEeecccCC---cEEEEEcCCCcc---------------------------h----hh----------------
Confidence 999999999999999 999999876310 0 00
Q ss_pred eEEEEeCCEEEEeecCCcCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCC
Q 000731 360 TALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPA 424 (1325)
Q Consensus 360 ~v~viDG~~l~lt~l~~~~vPpPm~~~~l~~~~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~~~~ 424 (1325)
-.+|.+.|.+|+||.|| +.||+++.|++|++||+..
T Consensus 615 ---------------------------l~~Ht~ti~SlsFS~dg--~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 615 ---------------------------LKGHTGTIYSLSFSRDG--NVLASGGADNSVRLWDLTK 650 (707)
T ss_pred ---------------------------hhcccCceeEEEEecCC--CEEEecCCCCeEEEEEchh
Confidence 02356789999999999 9999999999999999864
No 33
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.90 E-value=6.3e-22 Score=241.89 Aligned_cols=287 Identities=15% Similarity=0.138 Sum_probs=209.0
Q ss_pred CCCEEEEEEccCCCEEEEEECCCcEEEEeCCCCe--E-EEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceee
Q 000731 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNA--T-EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLY 151 (1325)
Q Consensus 75 ~~~V~~v~~spdg~~La~as~dG~I~lw~~~~~~--~-e~vg~~~~~I~~~awSPDG~~LA~~s~dgtV~l~s~~~d~~~ 151 (1325)
...|.++.|+|||+.|+.++.+++|++|+..+.. + .....|..+|..++|||||+.|++++.|++|++|+.. ..
T Consensus 159 ~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~---~~ 235 (456)
T KOG0266|consen 159 CPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLK---DD 235 (456)
T ss_pred cCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeecc---CC
Confidence 3679999999999999999999999999996654 3 2334568999999999999999999999999987641 11
Q ss_pred eeeccccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeecCCCCceeEEEEc
Q 000731 152 ENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWM 231 (1325)
Q Consensus 152 e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~~~v~~laws 231 (1325)
...+. .+++|.+.+.+++|+|+|++++ +++ .|++|||||..+|++..++.+|.+.+.+++|+
T Consensus 236 ~~~~~-----------~l~gH~~~v~~~~f~p~g~~i~-Sgs------~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~ 297 (456)
T KOG0266|consen 236 GRNLK-----------TLKGHSTYVTSVAFSPDGNLLV-SGS------DDGTVRIWDVRTGECVRKLKGHSDGISGLAFS 297 (456)
T ss_pred CeEEE-----------EecCCCCceEEEEecCCCCEEE-Eec------CCCcEEEEeccCCeEEEeeeccCCceEEEEEC
Confidence 12222 2337778899999999999888 554 46999999998999999999999999999999
Q ss_pred cCCCeEEEEecCCCCCCCCeEEEEeCCCceEE-EEEeccCCCC-cEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCee
Q 000731 232 PSGANIAAVYDRKSENKCPSIVFYERNGLERS-SFDINEQIDS-TVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHW 309 (1325)
Q Consensus 232 PdG~~IAs~~~d~~~~~~~~V~~~e~nGl~~~-~f~l~~~~~~-~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~n~~w 309 (1325)
|+|++|++++.| +.|++||..+.... ...+...... .+..+.|||+|++|++++.|+ ++++|++...+-
T Consensus 298 ~d~~~l~s~s~d------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~---~~~~w~l~~~~~ 368 (456)
T KOG0266|consen 298 PDGNLLVSASYD------GTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDR---TLKLWDLRSGKS 368 (456)
T ss_pred CCCCEEEEcCCC------ccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCC---eEEEEEccCCcc
Confidence 999999999875 57999996543321 0122222222 699999999999999999998 899999986542
Q ss_pred EEEeEEEEecCCcEEEEEccCCCcEEEEEecCCcEEEEEEEEeeeeCCCeeEEEEeCCEEEEeecCCcCCCCCceeeee-
Q 000731 310 YLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSL- 388 (1325)
Q Consensus 310 ylkqel~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDG~~l~lt~l~~~~vPpPm~~~~l- 388 (1325)
..++..+.... ...+++.. . +.+..++....+..|.+|++...... ..+
T Consensus 369 --~~~~~~~~~~~-~~~~~~~~-------~---------------~~~~~i~sg~~d~~v~~~~~~s~~~~-----~~l~ 418 (456)
T KOG0266|consen 369 --VGTYTGHSNLV-RCIFSPTL-------S---------------TGGKLIYSGSEDGSVYVWDSSSGGIL-----QRLE 418 (456)
T ss_pred --eeeecccCCcc-eeEecccc-------c---------------CCCCeEEEEeCCceEEEEeCCccchh-----hhhc
Confidence 22333222211 11111110 1 11122223334455667766532221 122
Q ss_pred cC-CCCEEEEEEecCCCCCEEEEEE--CCCcEEEEeCC
Q 000731 389 KF-PTAVTEMAFYSKSSKNCLAAIL--SDGCLCVVDLP 423 (1325)
Q Consensus 389 ~~-~~~V~~VaFSpdg~~~~LAs~s--~Dgti~lw~~~ 423 (1325)
.| ...|..++|+|.. +.+|+.+ .|+.+++|..+
T Consensus 419 ~h~~~~~~~~~~~~~~--~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 419 GHSKAAVSDLSSHPTE--NLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred CCCCCceeccccCCCc--CeeeecCcCCCceEEEecCC
Confidence 35 6788999999999 8999998 79999999864
No 34
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=4e-21 Score=205.29 Aligned_cols=277 Identities=13% Similarity=0.133 Sum_probs=205.9
Q ss_pred ceeEEeeecC-CCEEEEEeCCCcEEEEeccccccccccee-eccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcE
Q 000731 22 ILQFSALDIE-QNRLFFASSANNIYSAQLSSFQNERASIK-TAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLL 99 (1325)
Q Consensus 22 ~~~~~~~d~~-~~~l~~~s~~~~i~~~~~~~~~~~~~~~~-~~l~~~l~~~~~~~~~~V~~v~~spdg~~La~as~dG~I 99 (1325)
.+-.+||.+- +..|++|+.|..|..|+++ .+.. |.. ..|+.+ | .-.|.+|+|+|.|+.||+||-|+++
T Consensus 16 r~W~~awhp~~g~ilAscg~Dk~vriw~~~--~~~s-~~ck~vld~~---h----krsVRsvAwsp~g~~La~aSFD~t~ 85 (312)
T KOG0645|consen 16 RVWSVAWHPGKGVILASCGTDKAVRIWSTS--SGDS-WTCKTVLDDG---H----KRSVRSVAWSPHGRYLASASFDATV 85 (312)
T ss_pred cEEEEEeccCCceEEEeecCCceEEEEecC--CCCc-EEEEEecccc---c----hheeeeeeecCCCcEEEEeeccceE
Confidence 7889999998 7789999999999999994 2222 332 222222 2 3579999999999999999999999
Q ss_pred EEEeCCCCeEEE---eceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeeeccccCCCceeccCccccCCCCe
Q 000731 100 LLHSVDGNATEV---VGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFK 176 (1325)
Q Consensus 100 ~lw~~~~~~~e~---vg~~~~~I~~~awSPDG~~LA~~s~dgtV~l~s~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i 176 (1325)
.||...++..++ +..|+..|.|++||++|.+||++|.|+.|-+|..+-+--.+.. .-.++|...|
T Consensus 86 ~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~------------aVL~~HtqDV 153 (312)
T KOG0645|consen 86 VIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECI------------AVLQEHTQDV 153 (312)
T ss_pred EEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEE------------eeeccccccc
Confidence 999988777663 3457899999999999999999999999999864411111111 0112455567
Q ss_pred EEEEEecCCcEEEEeeccccccCCCCEEEEEECCCC---ceeeeecCCCCceeEEEEccCCCeEEEEecCCCCCCCCeEE
Q 000731 177 SPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSG---TLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIV 253 (1325)
Q Consensus 177 ~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G---~l~~t~e~~~~~v~~lawsPdG~~IAs~~~d~~~~~~~~V~ 253 (1325)
-.+.|.|--..|+ ++++ |.+||+|..+.+ ++..++.+|.+.+.+++|.|.|+.++++++| .+|+
T Consensus 154 K~V~WHPt~dlL~-S~SY------DnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD------~tv~ 220 (312)
T KOG0645|consen 154 KHVIWHPTEDLLF-SCSY------DNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDD------GTVS 220 (312)
T ss_pred cEEEEcCCcceeE-Eecc------CCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCC------cceE
Confidence 8899999888999 5555 489999988623 6888999999999999999999999999986 4699
Q ss_pred EEeCCCceEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeC----CeeEE--EeEEEEecCCcEEEEE
Q 000731 254 FYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSN----NHWYL--KYEIRYLRRDGIRFMW 327 (1325)
Q Consensus 254 ~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~n----~~wyl--kqel~~~~~~~~~v~W 327 (1325)
+|-.- ..++..+...++.++|. ...||+++.|+ .|+|+.... ..|-+ +++ ..|..+..++.|
T Consensus 221 Iw~~~------~~~~~~~sr~~Y~v~W~--~~~IaS~ggD~---~i~lf~~s~~~d~p~~~l~~~~~-~aHe~dVNsV~w 288 (312)
T KOG0645|consen 221 IWRLY------TDLSGMHSRALYDVPWD--NGVIASGGGDD---AIRLFKESDSPDEPSWNLLAKKE-GAHEVDVNSVQW 288 (312)
T ss_pred eeeec------cCcchhcccceEeeeec--ccceEeccCCC---EEEEEEecCCCCCchHHHHHhhh-cccccccceEEE
Confidence 99621 12333345679999999 44799999888 899998763 22211 111 123345589999
Q ss_pred ccCCCcEEEEEecCCcEE
Q 000731 328 HPTKPLQLICWTLDGQIT 345 (1325)
Q Consensus 328 sp~~~~~L~~~~~~g~~~ 345 (1325)
.|..+.+|..+..||.+.
T Consensus 289 ~p~~~~~L~s~~DDG~v~ 306 (312)
T KOG0645|consen 289 NPKVSNRLASGGDDGIVN 306 (312)
T ss_pred cCCCCCceeecCCCceEE
Confidence 996666677777677664
No 35
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=1.5e-21 Score=215.52 Aligned_cols=292 Identities=15% Similarity=0.125 Sum_probs=216.1
Q ss_pred CCEEEEEEccCCCEEEEEECCCcEEEEeCCCCeEE-EeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeee
Q 000731 76 DSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATE-VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENP 154 (1325)
Q Consensus 76 ~~V~~v~~spdg~~La~as~dG~I~lw~~~~~~~e-~vg~~~~~I~~~awSPDG~~LA~~s~dgtV~l~s~~~d~~~e~~ 154 (1325)
..|+.+-|+|+--..+++++|++|++||..+++++ .+-+|.++|..++|+..|+.||+++.|-++++|+.+ ... .+
T Consensus 109 ~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~--~~~-~c 185 (406)
T KOG0295|consen 109 SSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFD--TFF-RC 185 (406)
T ss_pred cceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHH--HHH-HH
Confidence 47999999999999999999999999999999886 344468889999999999999999999889887532 111 11
Q ss_pred ccccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeecCCCCceeEEEEccCC
Q 000731 155 LEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSG 234 (1325)
Q Consensus 155 l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~~~v~~lawsPdG 234 (1325)
+... ++|+..+.++.|.|-|.+++ +.+ .|++|+.|+..+|.+..++.+|..++..+.-+-||
T Consensus 186 ~ks~-----------~gh~h~vS~V~f~P~gd~il-S~s------rD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DG 247 (406)
T KOG0295|consen 186 IKSL-----------IGHEHGVSSVFFLPLGDHIL-SCS------RDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDG 247 (406)
T ss_pred HHHh-----------cCcccceeeEEEEecCCeee-ecc------cccceeEEecccceeEEeccCchHhEEEEEecCCe
Confidence 1111 15667889999999999999 554 36899999999999999999999999999999999
Q ss_pred CeEEEEecCCCCCCCCeEEEEeCCCc-eEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeEEEe
Q 000731 235 ANIAAVYDRKSENKCPSIVFYERNGL-ERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKY 313 (1325)
Q Consensus 235 ~~IAs~~~d~~~~~~~~V~~~e~nGl-~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~n~~wylkq 313 (1325)
.+|||++.| ++|++|-.+.. -.. .++. ++..|..++|-|...+=.+....+ +
T Consensus 248 ti~As~s~d------qtl~vW~~~t~~~k~--~lR~-hEh~vEci~wap~~~~~~i~~at~-----------~------- 300 (406)
T KOG0295|consen 248 TIIASCSND------QTLRVWVVATKQCKA--ELRE-HEHPVECIAWAPESSYPSISEATG-----------S------- 300 (406)
T ss_pred eEEEecCCC------ceEEEEEeccchhhh--hhhc-cccceEEEEecccccCcchhhccC-----------C-------
Confidence 999999985 57999974321 111 1232 255799999999775211110000 0
Q ss_pred EEEEecCCcEEEEEccCCCcEEEEEecCCcEEEEEEEEeeeeCCCeeEEEEeCCEEEEeecCCcCCCCCceeeee-cCCC
Q 000731 314 EIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSL-KFPT 392 (1325)
Q Consensus 314 el~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDG~~l~lt~l~~~~vPpPm~~~~l-~~~~ 392 (1325)
. ++..-+..++. ++++++|+ |+.|||..+| .|.+
T Consensus 301 ------~---------~~~~~l~s~Sr-------------------------DktIk~wd-----v~tg~cL~tL~ghdn 335 (406)
T KOG0295|consen 301 ------T---------NGGQVLGSGSR-------------------------DKTIKIWD-----VSTGMCLFTLVGHDN 335 (406)
T ss_pred ------C---------CCccEEEeecc-------------------------cceEEEEe-----ccCCeEEEEEecccc
Confidence 0 01111222222 23455554 4668999998 5999
Q ss_pred CEEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccccccCCceeEeeeccccccCcEEEEEEecCCeEEEEEecCCCCc
Q 000731 393 AVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHS 472 (1325)
Q Consensus 393 ~V~~VaFSpdg~~~~LAs~s~Dgti~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~~~~~ 472 (1325)
+|.+++|+|.| +.|++...|+++++|++.+..|+.+++.++ .-+..+.|..+--++.+++-+ .+
T Consensus 336 wVr~~af~p~G--kyi~ScaDDktlrvwdl~~~~cmk~~~ah~------------hfvt~lDfh~~~p~VvTGsVd--qt 399 (406)
T KOG0295|consen 336 WVRGVAFSPGG--KYILSCADDKTLRVWDLKNLQCMKTLEAHE------------HFVTSLDFHKTAPYVVTGSVD--QT 399 (406)
T ss_pred eeeeeEEcCCC--eEEEEEecCCcEEEEEeccceeeeccCCCc------------ceeEEEecCCCCceEEecccc--ce
Confidence 99999999999 999999999999999999988887766443 235666776666677766544 34
Q ss_pred eEEE
Q 000731 473 NYFR 476 (1325)
Q Consensus 473 ~~~~ 476 (1325)
+.+|
T Consensus 400 ~Kvw 403 (406)
T KOG0295|consen 400 VKVW 403 (406)
T ss_pred eeee
Confidence 4444
No 36
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=99.89 E-value=5.6e-18 Score=210.30 Aligned_cols=316 Identities=17% Similarity=0.150 Sum_probs=212.2
Q ss_pred CCCchHHHHHHHHHHHhhcCCCCCCchhHhhhHhhcCCChhHHHHHHHHHHHHhhcccCCCCCCCCChhhHHHHHHHHHh
Q 000731 808 ECNKVSSVLLAIRKALEEKVPESPSRELCILTTLARSDPPALEEALERIKIIRETELLGSDEPRRMSYPSAEEALKHLLW 887 (1325)
Q Consensus 808 ~~~KV~~iC~a~~~~l~~~~~~~~~~~~~ilT~~~~~~pp~le~aL~~i~~l~~~~~~~~~~~~~~~~~~ae~alkyl~~ 887 (1325)
.++|-+.||++.|.-||. .++..+.+.-++.+..... +-+|....+++|-.- .-.=+. ++..-.+.+. .|
T Consensus 656 ~~~ka~VvLQ~~RGNLEt--I~pR~lVLa~vr~~l~~~~--y~~AF~~~RkhRidl-nii~d~---~~~~Fl~nv~--af 725 (1265)
T KOG1920|consen 656 VPQKAAVVLQMPRGNLET--IYPRILVLAKVRTLLDRLR--YKEAFEVMRKHRIDL-NIIFDY---DPKRFLKNVP--AF 725 (1265)
T ss_pred ccchhhHhHhhcCCCcee--echhhhHHHHHHHHHHHHH--HHHHHHHHHHhccCc-cchhhc---CHHHHHhhHH--HH
Confidence 457889999999999998 7899999999999988887 999999988887321 000000 1111112211 22
Q ss_pred hccHH-----HHHHHHHhccCh-hHHHHHHHHhc------CCcc----cchH-h-HHHHhcC-CchhccccHHHhhcC--
Q 000731 888 LADSE-----AVYEAALGLYDL-NLAAIVALNSQ------RDPK----EFLP-Y-LQELESM-PPLLMRYTIDLRLQR-- 946 (1325)
Q Consensus 888 L~d~n-----~Ly~~ALg~YD~-~lal~VAq~sq------kDPk----eYLp-f-L~~L~~l-~~~~~~~~Id~~L~r-- 946 (1325)
|=+.| .||=.+|.-=|+ +.+.-.--.|+ +||- ++++ - ++-|.+- |..+..+-|-.|++.
T Consensus 726 l~~in~~~~l~lfl~~lk~eDvtk~~y~~~~~s~k~~~~~r~~~d~kv~~vc~~vr~~l~~~~~~~~~~~ilTs~vk~~~ 805 (1265)
T KOG1920|consen 726 LKQINRVNHLELFLTELKEEDVTKTMYSSTSGSGKQVYMSRDPYDNKVNSVCDAVRNALERRAPDKFNLFILTSYVKSNP 805 (1265)
T ss_pred hccCCcHHHHHHHHhhcccchhhhhhccccccccceeEEeccchhhHHHHHHHHHHHHHhhcCcchhhHHHHHHHHhcCc
Confidence 22111 244444443332 11110111111 3442 2221 1 1222222 335555566666664
Q ss_pred --HHHHHHHHHHcC----CCcHHHHHHHH----HHHhcChHHHHhhc-------------CCcHHHHHHHHHHHHHHhcc
Q 000731 947 --FENALKHIVSMG----DSYHADCLNLM----KKYAQLFPLGLKLI-------------TDPAKMEQVLEAWADHLSDV 1003 (1325)
Q Consensus 947 --ye~Al~~l~~~g----~~~~d~ale~~----~~~~~ly~~AL~L~-------------~d~~~~~~i~~~~a~~L~~~ 1003 (1325)
-+.||+.+.+.. ..-.++|++++ ... .+|+.||.+| +||++|.++++.+=..=
T Consensus 806 ~~ie~aL~kI~~l~~~~~~~~ad~al~hll~Lvdvn-~lfn~ALgtYDl~Lal~VAq~SqkDPkEyLP~L~el~~m~--- 881 (1265)
T KOG1920|consen 806 PEIEEALQKIKELQLAQVAVSADEALKHLLFLVDVN-ELFNSALGTYDLDLALLVAQKSQKDPKEYLPFLNELKKME--- 881 (1265)
T ss_pred HHHHHHHHHHHHHHhcccchhHHHHHHHHHhhccHH-HHHHhhhcccchHHHHHHHHHhccChHHHHHHHHHHhhch---
Confidence 577777777654 23368888887 556 7788888776 39999999997665322
Q ss_pred ccHHHHHHHHHHcCCHHHHHHHHHHcC--CHHHHHHHHhhcC----------CCHHHHHHHHHHHHHHHHHcCChHHHHH
Q 000731 1004 KCFEDAATTYFCCSSLEKAMKAYRASG--NWSGVLTVAGLLK----------LGKDEVAKLAQELCEELQALGKPGEAAK 1071 (1325)
Q Consensus 1004 ~~~~eAa~~y~~ag~~ekAl~~y~~ag--~W~~al~la~~l~----------~~~~~~~~l~~~la~~L~~~~~~~eAa~ 1071 (1325)
--..-..+-...++|++|+....++| .|.+++.+.++.+ .+++..+.++.-.|++|.+.++|.+||.
T Consensus 882 -~~~rkF~ID~~L~ry~~AL~hLs~~~~~~~~e~~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal 960 (1265)
T KOG1920|consen 882 -TLLRKFKIDDYLKRYEDALSHLSECGETYFPECKNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAAL 960 (1265)
T ss_pred -hhhhheeHHHHHHHHHHHHHHHHHcCccccHHHHHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHH
Confidence 23344477778888888888888887 5777777776643 4566777899999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHhcCHHHHHHHHHhcC--CchhH---HHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH
Q 000731 1072 IALDYCGDVTNGISLLIDARDWEEALRVAFMHR--REDLI---TKVKHAS------LECASSLIGEYKEGLEKVGKYLT 1139 (1325)
Q Consensus 1072 i~~~yl~d~e~Av~~~~~~~~w~eA~rLa~~~~--~~dL~---e~v~~~l------~e~~~~~~e~l~~~~~~~~k~~~ 1139 (1325)
.|+. +|+.++|+++|..+++|.+|+.+|.+-. ..++. +++...| .|++..+.|.+.+.+++|.-+|+
T Consensus 961 ~Ye~-~GklekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~~~av~ll~k 1038 (1265)
T KOG1920|consen 961 MYER-CGKLEKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLSDPEEAVALLCK 1038 (1265)
T ss_pred HHHH-hccHHHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcCHHHHHHHHhh
Confidence 9999 9999999999999999999999999644 33444 2244444 67888889999999998887775
No 37
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.88 E-value=3.5e-20 Score=206.10 Aligned_cols=273 Identities=15% Similarity=0.158 Sum_probs=206.8
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEE
Q 000731 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1325)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~V~~v~~spdg~~La~as~dG~I~l 101 (1325)
.+.+++|+++++.|++++.++.+..|+. .+++. ... +..+ ...+..+.|+|+++.|++++.+|.|.+
T Consensus 11 ~i~~~~~~~~~~~l~~~~~~g~i~i~~~--~~~~~---~~~----~~~~----~~~i~~~~~~~~~~~l~~~~~~~~i~i 77 (289)
T cd00200 11 GVTCVAFSPDGKLLATGSGDGTIKVWDL--ETGEL---LRT----LKGH----TGPVRDVAASADGTYLASGSSDKTIRL 77 (289)
T ss_pred CEEEEEEcCCCCEEEEeecCcEEEEEEe--eCCCc---EEE----EecC----CcceeEEEECCCCCEEEEEcCCCeEEE
Confidence 7899999999999999999999999998 34332 111 2222 346789999999999999999999999
Q ss_pred EeCCCC-eEEEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeec-CceeeeeeccccCCCceeccCccccCCCCeEEE
Q 000731 102 HSVDGN-ATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHD-WDLLYENPLEELAEGFDVHEPELSSSFSFKSPI 179 (1325)
Q Consensus 102 w~~~~~-~~e~vg~~~~~I~~~awSPDG~~LA~~s~dgtV~l~s~~-~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~i 179 (1325)
|+..++ .+.....+...|.+++|+|+++++++++.|+.|.+|+.. ....... ..|.+.+.++
T Consensus 78 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~----------------~~~~~~i~~~ 141 (289)
T cd00200 78 WDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTL----------------RGHTDWVNSV 141 (289)
T ss_pred EEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEe----------------ccCCCcEEEE
Confidence 999874 333444557789999999999999988889999998643 3322222 1344678999
Q ss_pred EEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeecCCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeCCC
Q 000731 180 SWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNG 259 (1325)
Q Consensus 180 sWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~~~v~~lawsPdG~~IAs~~~d~~~~~~~~V~~~e~nG 259 (1325)
+|+|++.+++ +++ .++.|++||..+++.......+.+.+.+++|+|+|+.|++++.+ +.|.+|+...
T Consensus 142 ~~~~~~~~l~-~~~------~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~------~~i~i~d~~~ 208 (289)
T cd00200 142 AFSPDGTFVA-SSS------QDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSD------GTIKLWDLST 208 (289)
T ss_pred EEcCcCCEEE-EEc------CCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCC------CcEEEEECCC
Confidence 9999999988 553 25899999997888888888888889999999999999888764 5699999653
Q ss_pred -ceEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeEEEeEEEEecCCcEEEEEccCCCcEEEEE
Q 000731 260 -LERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICW 338 (1325)
Q Consensus 260 -l~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~n~~wylkqel~~~~~~~~~v~Wsp~~~~~L~~~ 338 (1325)
.....+ . .+...|..++|+|++.++++++.++ .|++|+..+.. ....+..+......+.|+|++.. |.++
T Consensus 209 ~~~~~~~--~-~~~~~i~~~~~~~~~~~~~~~~~~~---~i~i~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~-l~~~ 279 (289)
T cd00200 209 GKCLGTL--R-GHENGVNSVAFSPDGYLLASGSEDG---TIRVWDLRTGE--CVQTLSGHTNSVTSLAWSPDGKR-LASG 279 (289)
T ss_pred Cceecch--h-hcCCceEEEEEcCCCcEEEEEcCCC---cEEEEEcCCce--eEEEccccCCcEEEEEECCCCCE-EEEe
Confidence 222222 1 2345799999999999999988777 89999997643 23344433333488999998654 6666
Q ss_pred ecCCcEE
Q 000731 339 TLDGQIT 345 (1325)
Q Consensus 339 ~~~g~~~ 345 (1325)
+.+|.+.
T Consensus 280 ~~d~~i~ 286 (289)
T cd00200 280 SADGTIR 286 (289)
T ss_pred cCCCeEE
Confidence 6666554
No 38
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.88 E-value=9e-21 Score=231.75 Aligned_cols=293 Identities=15% Similarity=0.154 Sum_probs=210.0
Q ss_pred EeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeeeccccCCCceeccCccccCCCCeEEEEEecCCcEEEE
Q 000731 111 VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFAT 190 (1325)
Q Consensus 111 ~vg~~~~~I~~~awSPDG~~LA~~s~dgtV~l~s~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAt 190 (1325)
..+++...|.++.|||||+.||+++.|+++++|.... .....+... .+|...|..++|+|||++++
T Consensus 154 ~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~--~~~~~~~~l-----------~~h~~~v~~~~fs~d~~~l~- 219 (456)
T KOG0266|consen 154 LAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEG--IKSNLLREL-----------SGHTRGVSDVAFSPDGSYLL- 219 (456)
T ss_pred ecccccCceEEEEEcCCCCeEEEccCCCcEEEeeccc--ccchhhccc-----------cccccceeeeEECCCCcEEE-
Confidence 3455578899999999999999999999999985411 110011111 15677899999999999999
Q ss_pred eeccccccCCCCEEEEEEC-CCCceeeeecCCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeCC-CceEEEEEec
Q 000731 191 LSEFCNSSKLHKRLKVWER-DSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERN-GLERSSFDIN 268 (1325)
Q Consensus 191 vss~d~~~~~d~~irVWd~-~~G~l~~t~e~~~~~v~~lawsPdG~~IAs~~~d~~~~~~~~V~~~e~n-Gl~~~~f~l~ 268 (1325)
+++ .|.+|||||. ..|..+.++.+|...+.+++|+|+|++|+||+.| .+|++|+.. |...+. +.
T Consensus 220 s~s------~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D------~tvriWd~~~~~~~~~--l~ 285 (456)
T KOG0266|consen 220 SGS------DDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDD------GTVRIWDVRTGECVRK--LK 285 (456)
T ss_pred Eec------CCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCC------CcEEEEeccCCeEEEe--ee
Confidence 554 3689999999 6678999999999999999999999999999997 569999964 444332 33
Q ss_pred cCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeEEEeEEEEecCC-c-EEEEEccCCCcEEEEEecCCcEEE
Q 000731 269 EQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRD-G-IRFMWHPTKPLQLICWTLDGQITT 346 (1325)
Q Consensus 269 ~~~~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~n~~wylkqel~~~~~~-~-~~v~Wsp~~~~~L~~~~~~g~~~~ 346 (1325)
. +...|..++|++||.+|++++.|+ .|++||+.+++-.+..++...... . ..+.|+|++.. +...+
T Consensus 286 ~-hs~~is~~~f~~d~~~l~s~s~d~---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~-ll~~~------- 353 (456)
T KOG0266|consen 286 G-HSDGISGLAFSPDGNLLVSASYDG---TIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKY-LLSAS------- 353 (456)
T ss_pred c-cCCceEEEEECCCCCEEEEcCCCc---cEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcE-EEEec-------
Confidence 3 356899999999999999999999 999999988652112334333333 3 67778877654 33333
Q ss_pred EEEEEeeeeCCCeeEEEEeCCEEEEeecCCcCCCCCceeeeecCCC---CEEEEEEecCCCCCEEEEEECCCcEEEEeCC
Q 000731 347 YNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPT---AVTEMAFYSKSSKNCLAAILSDGCLCVVDLP 423 (1325)
Q Consensus 347 ~~~~~~~~~~d~~~v~viDG~~l~lt~l~~~~vPpPm~~~~l~~~~---~V~~VaFSpdg~~~~LAs~s~Dgti~lw~~~ 423 (1325)
+++.+++|+++...++- +. -.|.. .+.+..+++.| ..+.+++.|+.|.+|+..
T Consensus 354 ------------------~d~~~~~w~l~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~--~~i~sg~~d~~v~~~~~~ 409 (456)
T KOG0266|consen 354 ------------------LDRTLKLWDLRSGKSVG--TY--TGHSNLVRCIFSPTLSTGG--KLIYSGSEDGSVYVWDSS 409 (456)
T ss_pred ------------------CCCeEEEEEccCCccee--ee--cccCCcceeEecccccCCC--CeEEEEeCCceEEEEeCC
Confidence 34455555555332211 10 01222 34455567788 899999999999999998
Q ss_pred CCCccccccCCceeEeeeccccccCcEEEEEEecCCeEEEEEecCCCCceEEEEe
Q 000731 424 APDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGA 478 (1325)
Q Consensus 424 ~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~~~~~~~~~~~ 478 (1325)
+......+.|+. ...+..+.|.+...++++.+......+.+|..
T Consensus 410 s~~~~~~l~~h~-----------~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~ 453 (456)
T KOG0266|consen 410 SGGILQRLEGHS-----------KAAVSDLSSHPTENLIASSSFEGDGLIRLWKY 453 (456)
T ss_pred ccchhhhhcCCC-----------CCceeccccCCCcCeeeecCcCCCceEEEecC
Confidence 765554555542 34678889999999999887554466777754
No 39
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=3.5e-21 Score=214.67 Aligned_cols=284 Identities=13% Similarity=0.069 Sum_probs=198.8
Q ss_pred CCCEEEEEEccCCCEEEEEECCCcEEEEeCCC-CeE----EEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCce
Q 000731 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDG-NAT----EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDL 149 (1325)
Q Consensus 75 ~~~V~~v~~spdg~~La~as~dG~I~lw~~~~-~~~----e~vg~~~~~I~~~awSPDG~~LA~~s~dgtV~l~s~~~d~ 149 (1325)
.+.|+-+.||++|+.||+||.|.+..+|.+.. ..+ .++| |..+|..+.||||.++|++++.|..+.+| |+
T Consensus 224 tdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvg-h~~~V~yi~wSPDdryLlaCg~~e~~~lw----Dv 298 (519)
T KOG0293|consen 224 TDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVG-HSQPVSYIMWSPDDRYLLACGFDEVLSLW----DV 298 (519)
T ss_pred CCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeec-ccCceEEEEECCCCCeEEecCchHheeec----cC
Confidence 57999999999999999999999999998743 232 2566 57899999999999999999999888665 44
Q ss_pred eeeeeccccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeecCCC-CceeEE
Q 000731 150 LYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKA-FMGAVL 228 (1325)
Q Consensus 150 ~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~-~~v~~l 228 (1325)
-++...+.... ++...+.+.+|.|||..|+ +++ .||+|..||. +|......+++. ..+.++
T Consensus 299 ~tgd~~~~y~~----------~~~~S~~sc~W~pDg~~~V-~Gs------~dr~i~~wdl-Dgn~~~~W~gvr~~~v~dl 360 (519)
T KOG0293|consen 299 DTGDLRHLYPS----------GLGFSVSSCAWCPDGFRFV-TGS------PDRTIIMWDL-DGNILGNWEGVRDPKVHDL 360 (519)
T ss_pred Ccchhhhhccc----------CcCCCcceeEEccCCceeE-ecC------CCCcEEEecC-CcchhhcccccccceeEEE
Confidence 44444433321 2235678999999999999 664 4699999999 999888877754 458999
Q ss_pred EEccCCCeEEEEecCCCCCCCCeEEEEeCCCceEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCe
Q 000731 229 EWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNH 308 (1325)
Q Consensus 229 awsPdG~~IAs~~~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~n~~ 308 (1325)
+.+|||+.+.+...| ..|+++++....... .+ ..+..|.+++.|.||++..+...+. .|++||...
T Consensus 361 ait~Dgk~vl~v~~d------~~i~l~~~e~~~dr~-li--se~~~its~~iS~d~k~~LvnL~~q---ei~LWDl~e-- 426 (519)
T KOG0293|consen 361 AITYDGKYVLLVTVD------KKIRLYNREARVDRG-LI--SEEQPITSFSISKDGKLALVNLQDQ---EIHLWDLEE-- 426 (519)
T ss_pred EEcCCCcEEEEEecc------cceeeechhhhhhhc-cc--cccCceeEEEEcCCCcEEEEEcccC---eeEEeecch--
Confidence 999999998777765 458888764322111 11 1245799999999999999988888 899999984
Q ss_pred eEEEeEEEEecCCcEEEEEccCCCcEEEEEecCCcEEEEEEEEeeeeCCCeeEEEEeCCEEEEeecCCcCCCCCceeeee
Q 000731 309 WYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSL 388 (1325)
Q Consensus 309 wylkqel~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDG~~l~lt~l~~~~vPpPm~~~~l 388 (1325)
|.+.+...++... ...++...+.+ ++.-++....+.+|.+|...... |.. ++
T Consensus 427 ~~lv~kY~Ghkq~----------~fiIrSCFgg~-------------~~~fiaSGSED~kvyIWhr~sgk---ll~--~L 478 (519)
T KOG0293|consen 427 NKLVRKYFGHKQG----------HFIIRSCFGGG-------------NDKFIASGSEDSKVYIWHRISGK---LLA--VL 478 (519)
T ss_pred hhHHHHhhccccc----------ceEEEeccCCC-------------CcceEEecCCCceEEEEEccCCc---eeE--ee
Confidence 3222222121111 11111111100 01111222344566666654322 222 34
Q ss_pred -cCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCC
Q 000731 389 -KFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPA 424 (1325)
Q Consensus 389 -~~~~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~~~~ 424 (1325)
+|...|++|+|+|... .++|+++.||||++|....
T Consensus 479 sGHs~~vNcVswNP~~p-~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 479 SGHSKTVNCVSWNPADP-EMFASASDDGTIRIWGPSD 514 (519)
T ss_pred cCCcceeeEEecCCCCH-HHhhccCCCCeEEEecCCc
Confidence 4788999999999864 7899999999999998764
No 40
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.87 E-value=8e-21 Score=234.34 Aligned_cols=305 Identities=16% Similarity=0.183 Sum_probs=210.5
Q ss_pred EeceecCcEEEEEEcCCCCeEEEEe--CCccEEEEeecCceee-eeeccccCCCceeccCccccCCCCeEEEEEecCCcE
Q 000731 111 VVGRVEGGVRFISPSPDGDLLGVTT--GFGQILVMTHDWDLLY-ENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKY 187 (1325)
Q Consensus 111 ~vg~~~~~I~~~awSPDG~~LA~~s--~dgtV~l~s~~~d~~~-e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~ 187 (1325)
.++|++..|.++..+|||..+|+++ .|+.+.+|+.+ ++. +.......-.+++ .|...|++.+.++.|+|||+|
T Consensus 8 wv~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~--~vl~~~~~~~~~l~k~l--~~m~~h~~sv~CVR~S~dG~~ 83 (942)
T KOG0973|consen 8 WVNHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQD--PVLDEKEEKNENLPKHL--CTMDDHDGSVNCVRFSPDGSY 83 (942)
T ss_pred ccccCCeeEEEEEecCCceeEecCCccccccceeeccc--cccchhhhhhcccchhh--eeeccccCceeEEEECCCCCe
Confidence 4677777899999999999999999 89999999764 221 1110000001111 233367889999999999999
Q ss_pred EEEeeccccccCCCCEEEEEECCC-------C-----------ceeeeecCCCCceeEEEEccCCCeEEEEecCCCCCCC
Q 000731 188 FATLSEFCNSSKLHKRLKVWERDS-------G-----------TLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKC 249 (1325)
Q Consensus 188 lAtvss~d~~~~~d~~irVWd~~~-------G-----------~l~~t~e~~~~~v~~lawsPdG~~IAs~~~d~~~~~~ 249 (1325)
|| +|+ .|+.|.||.+.+ | +...++.+|++-|..++|+|++.++||++-|
T Consensus 84 lA-sGS------DD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~D------ 150 (942)
T KOG0973|consen 84 LA-SGS------DDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLD------ 150 (942)
T ss_pred Ee-ecc------CcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEeccc------
Confidence 99 764 469999999952 1 1456678899999999999999999999996
Q ss_pred CeEEEEeCCCceEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeEEEeEEEEecC----Cc--E
Q 000731 250 PSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRR----DG--I 323 (1325)
Q Consensus 250 ~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~n~~wylkqel~~~~~----~~--~ 323 (1325)
++|.+|+..-. +..-++++ |...|..+.|.|-|+++|+.+.|+ +|++|.+.+ |-+-+.+..+-. .. .
T Consensus 151 nsViiwn~~tF-~~~~vl~~-H~s~VKGvs~DP~Gky~ASqsdDr---tikvwrt~d--w~i~k~It~pf~~~~~~T~f~ 223 (942)
T KOG0973|consen 151 NSVIIWNAKTF-ELLKVLRG-HQSLVKGVSWDPIGKYFASQSDDR---TLKVWRTSD--WGIEKSITKPFEESPLTTFFL 223 (942)
T ss_pred ceEEEEccccc-eeeeeeec-ccccccceEECCccCeeeeecCCc---eEEEEEccc--ceeeEeeccchhhCCCcceee
Confidence 57999983211 11112333 367899999999999999999999 999999876 655555543221 12 5
Q ss_pred EEEEccCCCcEEEEEecCCcEEEEEEEEeeeeCCCeeEEEEeCCEEEEeecCCcCCCCCceeee-ecCCCCEEEEEEecC
Q 000731 324 RFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFS-LKFPTAVTEMAFYSK 402 (1325)
Q Consensus 324 ~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDG~~l~lt~l~~~~vPpPm~~~~-l~~~~~V~~VaFSpd 402 (1325)
.+.|||||.. |+.... + . .+..+++.++-++ |.. ... ++|.+++..|+|+|.
T Consensus 224 RlSWSPDG~~-las~nA---~---------n-~~~~~~~IieR~t---Wk~----------~~~LvGH~~p~evvrFnP~ 276 (942)
T KOG0973|consen 224 RLSWSPDGHH-LASPNA---V---------N-GGKSTIAIIERGT---WKV----------DKDLVGHSAPVEVVRFNPK 276 (942)
T ss_pred ecccCCCcCe-ecchhh---c---------c-CCcceeEEEecCC---cee----------eeeeecCCCceEEEEeChH
Confidence 6889999875 333221 0 0 1223445554432 111 112 378999999999984
Q ss_pred --------CCC---C----EEEEEECCCcEEEEeCCCCCccccccCCceeEeeeccccccCcEEEEEEecCCeEEEEEec
Q 000731 403 --------SSK---N----CLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHH 467 (1325)
Q Consensus 403 --------g~~---~----~LAs~s~Dgti~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~ 467 (1325)
|.. + .+|+|+.|++|.+|....+.++ +--++ ....+|..++|+|||..|.+.+.
T Consensus 277 lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl--~vi~~---------lf~~SI~DmsWspdG~~LfacS~ 345 (942)
T KOG0973|consen 277 LFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPL--FVIHN---------LFNKSIVDMSWSPDGFSLFACSL 345 (942)
T ss_pred HhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCch--hhhhh---------hhcCceeeeeEcCCCCeEEEEec
Confidence 111 2 7899999999999998654333 11111 12348999999999987777776
Q ss_pred CCCCceEEEEee
Q 000731 468 GPRHSNYFRGAT 479 (1325)
Q Consensus 468 ~~~~~~~~~~~~ 479 (1325)
+ .++.++.+.
T Consensus 346 D--GtV~~i~Fe 355 (942)
T KOG0973|consen 346 D--GTVALIHFE 355 (942)
T ss_pred C--CeEEEEEcc
Confidence 5 467676664
No 41
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.87 E-value=6.3e-20 Score=197.80 Aligned_cols=263 Identities=13% Similarity=0.074 Sum_probs=204.8
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEE
Q 000731 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1325)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~V~~v~~spdg~~La~as~dG~I~l 101 (1325)
.+.++-|-+|+..|.++|.|+.++.||. ++.+. ++. + -+|...|...+|+|.|+.+|.|+-|....+
T Consensus 57 Ki~~~~ws~Dsr~ivSaSqDGklIvWDs--~TtnK---~ha-------i-pl~s~WVMtCA~sPSg~~VAcGGLdN~Csi 123 (343)
T KOG0286|consen 57 KIYAMDWSTDSRRIVSASQDGKLIVWDS--FTTNK---VHA-------I-PLPSSWVMTCAYSPSGNFVACGGLDNKCSI 123 (343)
T ss_pred ceeeeEecCCcCeEEeeccCCeEEEEEc--ccccc---eeE-------E-ecCceeEEEEEECCCCCeEEecCcCceeEE
Confidence 7889999999999999999999999999 55442 221 1 134569999999999999999999999999
Q ss_pred EeCCCC------eE-EEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeeeccccCCCceeccCccccCCC
Q 000731 102 HSVDGN------AT-EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFS 174 (1325)
Q Consensus 102 w~~~~~------~~-e~vg~~~~~I~~~awSPDG~~LA~~s~dgtV~l~s~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~ 174 (1325)
|++.+. .+ ..+..|.+.+.|..|-+|+ .|+++|+|.|.-+| |.-+++... .|++|.+
T Consensus 124 y~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~-~ilT~SGD~TCalW----Die~g~~~~-----------~f~GH~g 187 (343)
T KOG0286|consen 124 YPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDN-HILTGSGDMTCALW----DIETGQQTQ-----------VFHGHTG 187 (343)
T ss_pred EecccccccccceeeeeecCccceeEEEEEcCCC-ceEecCCCceEEEE----EcccceEEE-----------EecCCcc
Confidence 998753 22 2455579999999999985 57789999999876 433443322 3678899
Q ss_pred CeEEEEEec-CCcEEEEeeccccccCCCCEEEEEECCCCceeeeecCCCCceeEEEEccCCCeEEEEecCCCCCCCCeEE
Q 000731 175 FKSPISWRG-DGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIV 253 (1325)
Q Consensus 175 ~i~~isWsp-DG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~~~v~~lawsPdG~~IAs~~~d~~~~~~~~V~ 253 (1325)
.|.+++.+| |++.|+ +++- |+..+|||.++|.+..++++|+.-|++|.|-|+|.-+|+|++| .+.+
T Consensus 188 DV~slsl~p~~~ntFv-Sg~c------D~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD------~tcR 254 (343)
T KOG0286|consen 188 DVMSLSLSPSDGNTFV-SGGC------DKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDD------ATCR 254 (343)
T ss_pred cEEEEecCCCCCCeEE-eccc------ccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCC------ceeE
Confidence 999999999 999999 5543 5899999999999999999999999999999999999999997 4699
Q ss_pred EEeC-CCceEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeEEEeEEEEecCCcEEEEEccCCC
Q 000731 254 FYER-NGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKP 332 (1325)
Q Consensus 254 ~~e~-nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~n~~wylkqel~~~~~~~~~v~Wsp~~~ 332 (1325)
+||. .+.....|.- ......|.+++||-.|++|-.+..|. ++.+||+-...- ...+..|.+...++.-+||+-
T Consensus 255 lyDlRaD~~~a~ys~-~~~~~gitSv~FS~SGRlLfagy~d~---~c~vWDtlk~e~--vg~L~GHeNRvScl~~s~DG~ 328 (343)
T KOG0286|consen 255 LYDLRADQELAVYSH-DSIICGITSVAFSKSGRLLFAGYDDF---TCNVWDTLKGER--VGVLAGHENRVSCLGVSPDGM 328 (343)
T ss_pred EEeecCCcEEeeecc-CcccCCceeEEEcccccEEEeeecCC---ceeEeeccccce--EEEeeccCCeeEEEEECCCCc
Confidence 9993 3332222321 11234699999999999999999888 899999632211 123444433347777888774
No 42
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.87 E-value=3.5e-21 Score=219.77 Aligned_cols=231 Identities=11% Similarity=0.129 Sum_probs=173.2
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEcc-------CCCEEEEEE
Q 000731 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLM-------EKEALIVGT 94 (1325)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~V~~v~~sp-------dg~~La~as 94 (1325)
.+++..|-. +..+|++++|++++.|.- .+.+. ..+..+|.++ . .+++...| ..+.+++.+
T Consensus 16 ~vc~v~w~~-~eei~~~~dDh~~~~~~~--~~~~s-~~~~~~p~df-----~----pt~~h~~~rs~~~g~~~d~~~i~s 82 (737)
T KOG1524|consen 16 KVCCVDWSS-NEEIYFVSDDHQIFKWSD--VSRDS-VEVAKLPDDF-----V----PTDMHLGGRSSGGGKGSDTLLICS 82 (737)
T ss_pred eEEeecccc-cceEEEeccCceEEEeec--ccchh-hhhhhCCccc-----C----CccccccccccCCCCCcceEEEEc
Confidence 455666655 556666666666665543 23332 3344555542 1 22222222 236899999
Q ss_pred CCCcEEEEeCCCCeEEEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecC----------ceeeeeeccccC-----
Q 000731 95 SSGLLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDW----------DLLYENPLEELA----- 159 (1325)
Q Consensus 95 ~dG~I~lw~~~~~~~e~vg~~~~~I~~~awSPDG~~LA~~s~dgtV~l~s~~~----------d~~~e~~l~~~~----- 159 (1325)
.||.+.|.+..+..-..+..|.+.|.|.+|||||.-|.++++||.|++|++.+ .+++...+.+..
T Consensus 83 ~DGkf~il~k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~p~S~~vl~ 162 (737)
T KOG1524|consen 83 NDGRFVILNKSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCARWAPNSNSIVF 162 (737)
T ss_pred CCceEEEecccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchHHHHHhhcCceeEEEEECCCCCceEE
Confidence 99999999987643336778899999999999999999999999999999864 345555555544
Q ss_pred -CCceec---------cCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeecCCCCceeEEE
Q 000731 160 -EGFDVH---------EPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLE 229 (1325)
Q Consensus 160 -~~~~Vs---------~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~~~v~~la 229 (1325)
.+++++ ..+|++||+-|.+++|++....++ ++ ++|.++||||. .|+.+.++.+|+..++++|
T Consensus 163 c~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~-sg------GED~kfKvWD~-~G~~Lf~S~~~ey~ITSva 234 (737)
T KOG1524|consen 163 CQGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIA-SG------GEDFRFKIWDA-QGANLFTSAAEEYAITSVA 234 (737)
T ss_pred ecCCeEEEeecccccceeEEeccCcEEEEeecCcccccee-ec------CCceeEEeecc-cCcccccCChhccceeeee
Confidence 344543 457889999999999999999998 55 46799999999 9999999999999999999
Q ss_pred EccCCCeEEEEecCCCCCCCCeEEEEeCCCceEEEEEeccCCCCcEEEEEEccCCCeeEEEEccC
Q 000731 230 WMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFE 294 (1325)
Q Consensus 230 wsPdG~~IAs~~~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~ 294 (1325)
|.|+ ...|.++.. +.+ +..+..+.|..|+|||||+.+|+|+..|
T Consensus 235 ~npd-~~~~v~S~n-------t~R-------------~~~p~~GSifnlsWS~DGTQ~a~gt~~G 278 (737)
T KOG1524|consen 235 FNPE-KDYLLWSYN-------TAR-------------FSSPRVGSIFNLSWSADGTQATCGTSTG 278 (737)
T ss_pred eccc-cceeeeeee-------eee-------------ecCCCccceEEEEEcCCCceeeccccCc
Confidence 9999 888877762 343 2234457899999999999999999887
No 43
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.87 E-value=1.8e-19 Score=235.43 Aligned_cols=281 Identities=9% Similarity=0.064 Sum_probs=197.6
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEcc-CCCEEEEEECCCcEE
Q 000731 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLM-EKEALIVGTSSGLLL 100 (1325)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~V~~v~~sp-dg~~La~as~dG~I~ 100 (1325)
.+.+++|+++++.+++++.|+.|..|+........ ..+. .+ +. .+.....|.+++|+| ++..||+++.||+|+
T Consensus 485 ~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~-~~~~-~~--~~--~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~ 558 (793)
T PLN00181 485 LVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDG-RDIH-YP--VV--ELASRSKLSGICWNSYIKSQVASSNFEGVVQ 558 (793)
T ss_pred cEEEEEECCCCCEEEEEeCCCEEEEEECCcccccc-cccc-cc--eE--EecccCceeeEEeccCCCCEEEEEeCCCeEE
Confidence 78899999999999999999999999983100110 0000 00 00 011135789999987 478999999999999
Q ss_pred EEeCCCCeE-EEeceecCcEEEEEEcC-CCCeEEEEeCCccEEEEee-cCceeeeeeccccCCCceeccCccccCCCCeE
Q 000731 101 LHSVDGNAT-EVVGRVEGGVRFISPSP-DGDLLGVTTGFGQILVMTH-DWDLLYENPLEELAEGFDVHEPELSSSFSFKS 177 (1325)
Q Consensus 101 lw~~~~~~~-e~vg~~~~~I~~~awSP-DG~~LA~~s~dgtV~l~s~-~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~ 177 (1325)
+||..+++. ..+..|.+.|++++|+| ||.+|++++.|++|++|+. .+..+.... . ...+.
T Consensus 559 lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~----------------~-~~~v~ 621 (793)
T PLN00181 559 VWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIK----------------T-KANIC 621 (793)
T ss_pred EEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEe----------------c-CCCeE
Confidence 999987653 44555789999999997 8999999999999999873 233322221 1 13568
Q ss_pred EEEEe-cCCcEEEEeeccccccCCCCEEEEEECCCCc-eeeeecCCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEEE
Q 000731 178 PISWR-GDGKYFATLSEFCNSSKLHKRLKVWERDSGT-LQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFY 255 (1325)
Q Consensus 178 ~isWs-pDG~~lAtvss~d~~~~~d~~irVWd~~~G~-l~~t~e~~~~~v~~lawsPdG~~IAs~~~d~~~~~~~~V~~~ 255 (1325)
++.|+ ++|.+|| +++ .+++|++||..++. ...+..+|.+.+.+++|. +|..|++++.| ..|++|
T Consensus 622 ~v~~~~~~g~~la-tgs------~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D------~~ikiW 687 (793)
T PLN00181 622 CVQFPSESGRSLA-FGS------ADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTD------NTLKLW 687 (793)
T ss_pred EEEEeCCCCCEEE-EEe------CCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECC------CEEEEE
Confidence 99995 6799999 664 36899999986665 456677899999999997 78899999885 579999
Q ss_pred eCCC-------ceEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeEEEeE---------EEEec
Q 000731 256 ERNG-------LERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYE---------IRYLR 319 (1325)
Q Consensus 256 e~nG-------l~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~n~~wylkqe---------l~~~~ 319 (1325)
+... .... .+.+ +...+..++|+|+|.+||+++.|+ +|.+|+........... +....
T Consensus 688 d~~~~~~~~~~~~l~--~~~g-h~~~i~~v~~s~~~~~lasgs~D~---~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~ 761 (793)
T PLN00181 688 DLSMSISGINETPLH--SFMG-HTNVKNFVGLSVSDGYIATGSETN---EVFVYHKAFPMPVLSYKFKTIDPVSGLEVDD 761 (793)
T ss_pred eCCCCccccCCcceE--EEcC-CCCCeeEEEEcCCCCEEEEEeCCC---EEEEEECCCCCceEEEecccCCcccccccCC
Confidence 9631 1111 2222 356788999999999999999999 99999976432110000 00111
Q ss_pred -CC-cEEEEEccCCCcEEEEEecCCcEEE
Q 000731 320 -RD-GIRFMWHPTKPLQLICWTLDGQITT 346 (1325)
Q Consensus 320 -~~-~~~v~Wsp~~~~~L~~~~~~g~~~~ 346 (1325)
.. ...+.|+|++.. |..++.+|.+.+
T Consensus 762 ~~~~V~~v~ws~~~~~-lva~~~dG~I~i 789 (793)
T PLN00181 762 ASQFISSVCWRGQSST-LVAANSTGNIKI 789 (793)
T ss_pred CCcEEEEEEEcCCCCe-EEEecCCCcEEE
Confidence 11 266788887654 666666676653
No 44
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=1.8e-17 Score=198.65 Aligned_cols=347 Identities=12% Similarity=0.083 Sum_probs=243.4
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEE
Q 000731 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1325)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~V~~v~~spdg~~La~as~dG~I~l 101 (1325)
.+-+++|-|-.--|.+.--++.|-.||. .++.. +.. +.+| .+.|.+|+|+|++..+++|+.|-.|++
T Consensus 11 RvKglsFHP~rPwILtslHsG~IQlWDY--RM~tl---i~r----FdeH----dGpVRgv~FH~~qplFVSGGDDykIkV 77 (1202)
T KOG0292|consen 11 RVKGLSFHPKRPWILTSLHSGVIQLWDY--RMGTL---IDR----FDEH----DGPVRGVDFHPTQPLFVSGGDDYKIKV 77 (1202)
T ss_pred cccceecCCCCCEEEEeecCceeeeehh--hhhhH---Hhh----hhcc----CCccceeeecCCCCeEEecCCccEEEE
Confidence 5677888887877777766888999999 56543 221 3334 579999999999999999999999999
Q ss_pred EeCCCCeEE--EeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeeeccccCCCceeccCccccCCCCeEEE
Q 000731 102 HSVDGNATE--VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPI 179 (1325)
Q Consensus 102 w~~~~~~~e--~vg~~~~~I~~~awSPDG~~LA~~s~dgtV~l~s~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~i 179 (1325)
||..+.++- ..| |.+.|..+.|.|.-=++.++|.|+||++|+ |..-..+. ... ||...|.+.
T Consensus 78 WnYk~rrclftL~G-HlDYVRt~~FHheyPWIlSASDDQTIrIWN--wqsr~~ia--vlt-----------GHnHYVMcA 141 (1202)
T KOG0292|consen 78 WNYKTRRCLFTLLG-HLDYVRTVFFHHEYPWILSASDDQTIRIWN--WQSRKCIA--VLT-----------GHNHYVMCA 141 (1202)
T ss_pred Eecccceehhhhcc-ccceeEEeeccCCCceEEEccCCCeEEEEe--ccCCceEE--EEe-----------cCceEEEee
Confidence 999998764 566 588999999999999999999999999986 44333332 222 666778999
Q ss_pred EEecCCcEEEEeeccccccCCCCEEEEEECCCCc------------------------------eeeeecCCCCceeEEE
Q 000731 180 SWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGT------------------------------LQASSELKAFMGAVLE 229 (1325)
Q Consensus 180 sWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~------------------------------l~~t~e~~~~~v~~la 229 (1325)
.|.|--..++ ++|. |.+|||||. .|- .-..+|+|+..|+-+|
T Consensus 142 qFhptEDlIV-SaSL------DQTVRVWDi-sGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaA 213 (1202)
T KOG0292|consen 142 QFHPTEDLIV-SASL------DQTVRVWDI-SGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAA 213 (1202)
T ss_pred ccCCccceEE-Eecc------cceEEEEee-cchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEE
Confidence 9999888888 6766 479999997 330 1224678888899999
Q ss_pred EccCCCeEEEEecCCCCCCCCeEEEEeCCCceEEEE-EeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCe
Q 000731 230 WMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSF-DINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNH 308 (1325)
Q Consensus 230 wsPdG~~IAs~~~d~~~~~~~~V~~~e~nGl~~~~f-~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~n~~ 308 (1325)
|+|.--+|+||++| ..|++|..|-..--+. +.++ |.+.|.++-|.|.-+++.+.+.|+ +|++||+....
T Consensus 214 fhpTlpliVSG~DD------RqVKlWrmnetKaWEvDtcrg-H~nnVssvlfhp~q~lIlSnsEDk---sirVwDm~kRt 283 (1202)
T KOG0292|consen 214 FHPTLPLIVSGADD------RQVKLWRMNETKAWEVDTCRG-HYNNVSSVLFHPHQDLILSNSEDK---SIRVWDMTKRT 283 (1202)
T ss_pred ecCCcceEEecCCc------ceeeEEEeccccceeehhhhc-ccCCcceEEecCccceeEecCCCc---cEEEEeccccc
Confidence 99999999999996 5799998775332221 1223 357899999999999999999999 99999997532
Q ss_pred eEEEeEEEEec-CCc-EEEEEccCCCcEEEEEecCCcEEEEEEEEe---eeeCCCeeEEEEeCCEEEEeecCCcCCCCCc
Q 000731 309 WYLKYEIRYLR-RDG-IRFMWHPTKPLQLICWTLDGQITTYNFIWT---TAVMENSTALVIDGSKILVTPLSLSLMPPPM 383 (1325)
Q Consensus 309 wylkqel~~~~-~~~-~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~---~~~~d~~~v~viDG~~l~lt~l~~~~vPpPm 383 (1325)
- .-.|.. ++. +.++=||...+ +..+..+| +.++..-.. .+.+++++..| .++.|...+|+..---+-|
T Consensus 284 ~----v~tfrrendRFW~laahP~lNL-fAAgHDsG-m~VFkleRErpa~~v~~n~LfYv-kd~~i~~~d~~t~~d~~v~ 356 (1202)
T KOG0292|consen 284 S----VQTFRRENDRFWILAAHPELNL-FAAGHDSG-MIVFKLERERPAYAVNGNGLFYV-KDRFIRSYDLRTQKDTAVA 356 (1202)
T ss_pred c----eeeeeccCCeEEEEEecCCcce-eeeecCCc-eEEEEEcccCceEEEcCCEEEEE-ccceEEeeeccccccceeE
Confidence 1 112322 345 88888998764 55555444 433322111 11344444333 3677777777653211222
Q ss_pred eeeeec-CCCCEEEEEEecCCCCCE--EEEEECCCcEEEEeCCC
Q 000731 384 YLFSLK-FPTAVTEMAFYSKSSKNC--LAAILSDGCLCVVDLPA 424 (1325)
Q Consensus 384 ~~~~l~-~~~~V~~VaFSpdg~~~~--LAs~s~Dgti~lw~~~~ 424 (1325)
..+... .-.++.+++|+|.- +. |.+-..+|+..|+..+.
T Consensus 357 ~lr~~g~~~~~~~smsYNpae--~~vlics~~~n~~y~L~~ipk 398 (1202)
T KOG0292|consen 357 SLRRPGTLWQPPRSLSYNPAE--NAVLICSNLDNGEYELVQIPK 398 (1202)
T ss_pred eccCCCcccCCcceeeecccc--CeEEEEeccCCCeEEEEEecC
Confidence 222221 23567899999986 33 22333667777887753
No 45
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.85 E-value=4.9e-21 Score=213.82 Aligned_cols=271 Identities=15% Similarity=0.158 Sum_probs=204.3
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEE
Q 000731 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1325)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~V~~v~~spdg~~La~as~dG~I~l 101 (1325)
.+..+.|-+|+..|.++|+++-+.+|+...++.+. | +-+| .+.|.++.||++|..+++|..+|.|+.
T Consensus 98 ~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEt---i------lQaH----Ds~Vr~m~ws~~g~wmiSgD~gG~iKy 164 (464)
T KOG0284|consen 98 PVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFET---I------LQAH----DSPVRTMKWSHNGTWMISGDKGGMIKY 164 (464)
T ss_pred ceeeEEEcCCCceeEeecccccEEEecCceeeHHH---H------hhhh----cccceeEEEccCCCEEEEcCCCceEEe
Confidence 45667899999999999999999999984444332 2 2334 357999999999999999999999999
Q ss_pred EeCCCCeEE-EeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeeeccccCCCceeccCccccCCCCeEEEE
Q 000731 102 HSVDGNATE-VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPIS 180 (1325)
Q Consensus 102 w~~~~~~~e-~vg~~~~~I~~~awSPDG~~LA~~s~dgtV~l~s~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~is 180 (1325)
|+.+-.-+. +-++|...|++++|||...-++++++||+|+||+- ..... |.+..+|.-.+.++.
T Consensus 165 WqpnmnnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf----~~~ke-----------e~vL~GHgwdVksvd 229 (464)
T KOG0284|consen 165 WQPNMNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDF----RMPKE-----------ERVLRGHGWDVKSVD 229 (464)
T ss_pred cccchhhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEec----cCCch-----------hheeccCCCCcceec
Confidence 999865554 45566689999999999999999999999999752 11111 112235555678999
Q ss_pred EecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeecCCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeCCCc
Q 000731 181 WRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGL 260 (1325)
Q Consensus 181 WspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~~~v~~lawsPdG~~IAs~~~d~~~~~~~~V~~~e~nGl 260 (1325)
|.|.-..+| +++ .|..||+||+.+|.++.++..|...|..+.|+|+|++|+++++| ..+++||.. .
T Consensus 230 WHP~kgLia-sgs------kDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD------~~~kv~DiR-~ 295 (464)
T KOG0284|consen 230 WHPTKGLIA-SGS------KDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKD------QSCKVFDIR-T 295 (464)
T ss_pred cCCccceeE-Ecc------CCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCC------ceEEEEehh-H
Confidence 999988888 664 35799999999999999999999999999999999999999997 469999853 1
Q ss_pred eEEEEEeccCCCCcEEEEEEccCC-CeeEEEEccCCCCeEEEEEeeCCeeEEEeEEEEec-CCcEEEEEccCCCcEEEEE
Q 000731 261 ERSSFDINEQIDSTVELLKWNCMS-DLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLR-RDGIRFMWHPTKPLQLICW 338 (1325)
Q Consensus 261 ~~~~f~l~~~~~~~V~~laWSpDg-~~LAs~~~d~~~~~VqLW~~~n~~wylkqel~~~~-~~~~~v~Wsp~~~~~L~~~ 338 (1325)
...-|+.+++ ...|.+++|+|-- .+|++++.|+ .|..|.+....- .-++...+ ...++++|||-|.. |+.+
T Consensus 296 mkEl~~~r~H-kkdv~~~~WhP~~~~lftsgg~Dg---svvh~~v~~~~p--~~~i~~AHd~~iwsl~~hPlGhi-l~tg 368 (464)
T KOG0284|consen 296 MKELFTYRGH-KKDVTSLTWHPLNESLFTSGGSDG---SVVHWVVGLEEP--LGEIPPAHDGEIWSLAYHPLGHI-LATG 368 (464)
T ss_pred hHHHHHhhcc-hhhheeeccccccccceeeccCCC---ceEEEecccccc--ccCCCcccccceeeeecccccee-Eeec
Confidence 1112333433 4569999999954 5888999998 899998862110 11222222 23489999998754 4444
Q ss_pred ecC
Q 000731 339 TLD 341 (1325)
Q Consensus 339 ~~~ 341 (1325)
+.|
T Consensus 369 snd 371 (464)
T KOG0284|consen 369 SND 371 (464)
T ss_pred CCC
Confidence 433
No 46
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=1.7e-19 Score=213.74 Aligned_cols=277 Identities=17% Similarity=0.174 Sum_probs=200.6
Q ss_pred EeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEEEeCC
Q 000731 26 SALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSVD 105 (1325)
Q Consensus 26 ~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~V~~v~~spdg~~La~as~dG~I~lw~~~ 105 (1325)
+.|. -.+.|.++.... +|+|+. .++++ .. +..+. .+.|+++.|+++|..||+|..+|.|.|||..
T Consensus 183 ldWs-s~n~laValg~~-vylW~~--~s~~v----~~----l~~~~---~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~ 247 (484)
T KOG0305|consen 183 LDWS-SANVLAVALGQS-VYLWSA--SSGSV----TE----LCSFG---EELVTSVKWSPDGSHLAVGTSDGTVQIWDVK 247 (484)
T ss_pred hhcc-cCCeEEEEecce-EEEEec--CCCce----EE----eEecC---CCceEEEEECCCCCEEEEeecCCeEEEEehh
Confidence 3454 356777777666 999999 56653 11 22221 4689999999999999999999999999987
Q ss_pred CC-eEE-EeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeeeccccCCCceeccCccccCCCCeEEEEEec
Q 000731 106 GN-ATE-VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRG 183 (1325)
Q Consensus 106 ~~-~~e-~vg~~~~~I~~~awSPDG~~LA~~s~dgtV~l~s~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWsp 183 (1325)
.. .++ ..++|...|-+++|+ +..|.+|+.|+.|..++. ....... . ..++|...|+.+.|++
T Consensus 248 ~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dv----R~~~~~~---------~-~~~~H~qeVCgLkws~ 311 (484)
T KOG0305|consen 248 EQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDV----RISQHVV---------S-TLQGHRQEVCGLKWSP 311 (484)
T ss_pred hccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEE----ecchhhh---------h-hhhcccceeeeeEECC
Confidence 63 444 444488999999999 679999999999977542 1111111 0 1335667889999999
Q ss_pred CCcEEEEeeccccccCCCCEEEEEECCCCceeeeecCCCCceeEEEEcc-CCCeEEEEecCCCCCCCCeEEEEeCCC-ce
Q 000731 184 DGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMP-SGANIAAVYDRKSENKCPSIVFYERNG-LE 261 (1325)
Q Consensus 184 DG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~~~v~~lawsP-dG~~IAs~~~d~~~~~~~~V~~~e~nG-l~ 261 (1325)
||.+|| ++ +.|+.+.|||..+-+...+...|.+.|.+++|+| ...+||+|+.-+ +..|+||+.+. .+
T Consensus 312 d~~~lA-SG------gnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~----D~~i~fwn~~~g~~ 380 (484)
T KOG0305|consen 312 DGNQLA-SG------GNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSA----DRCIKFWNTNTGAR 380 (484)
T ss_pred CCCeec-cC------CCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCc----ccEEEEEEcCCCcE
Confidence 999999 65 4579999999866667777788999999999999 467899997644 58899999763 22
Q ss_pred EEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeEEEeEEEEecCCcEEEEEccCCCcEEEEEecC
Q 000731 262 RSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLD 341 (1325)
Q Consensus 262 ~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~n~~wylkqel~~~~~~~~~v~Wsp~~~~~L~~~~~~ 341 (1325)
... + .-...|.+|.||+..+-|+++.... .+.|+||+...+. .+..
T Consensus 381 i~~--v--dtgsQVcsL~Wsk~~kEi~sthG~s-~n~i~lw~~ps~~-------------------------~~~~---- 426 (484)
T KOG0305|consen 381 IDS--V--DTGSQVCSLIWSKKYKELLSTHGYS-ENQITLWKYPSMK-------------------------LVAE---- 426 (484)
T ss_pred ecc--c--ccCCceeeEEEcCCCCEEEEecCCC-CCcEEEEeccccc-------------------------eeee----
Confidence 221 1 1135799999999986555543322 1246666543210 0000
Q ss_pred CcEEEEEEEEeeeeCCCeeEEEEeCCEEEEeecCCcCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEe
Q 000731 342 GQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVD 421 (1325)
Q Consensus 342 g~~~~~~~~~~~~~~d~~~v~viDG~~l~lt~l~~~~vPpPm~~~~l~~~~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~ 421 (1325)
-..|...|..+++|||| ..+++++.|.|+++|+
T Consensus 427 ---------------------------------------------l~gH~~RVl~la~SPdg--~~i~t~a~DETlrfw~ 459 (484)
T KOG0305|consen 427 ---------------------------------------------LLGHTSRVLYLALSPDG--ETIVTGAADETLRFWN 459 (484)
T ss_pred ---------------------------------------------ecCCcceeEEEEECCCC--CEEEEecccCcEEecc
Confidence 01367789999999999 8999999999999999
Q ss_pred CCCC
Q 000731 422 LPAP 425 (1325)
Q Consensus 422 ~~~~ 425 (1325)
+-+.
T Consensus 460 ~f~~ 463 (484)
T KOG0305|consen 460 LFDE 463 (484)
T ss_pred ccCC
Confidence 8653
No 47
>PTZ00421 coronin; Provisional
Probab=99.85 E-value=5.1e-19 Score=216.36 Aligned_cols=226 Identities=13% Similarity=0.173 Sum_probs=163.6
Q ss_pred CCCEEEEEEcc-CCCEEEEEECCCcEEEEeCCCCe--------EEEeceecCcEEEEEEcCCC-CeEEEEeCCccEEEEe
Q 000731 75 GDSITAFDYLM-EKEALIVGTSSGLLLLHSVDGNA--------TEVVGRVEGGVRFISPSPDG-DLLGVTTGFGQILVMT 144 (1325)
Q Consensus 75 ~~~V~~v~~sp-dg~~La~as~dG~I~lw~~~~~~--------~e~vg~~~~~I~~~awSPDG-~~LA~~s~dgtV~l~s 144 (1325)
.+.|.+++|+| +++.|++|+.||+|++||+.++. +..+..|...|.+++|+|++ .+||+++.|++|++|+
T Consensus 75 ~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWD 154 (493)
T PTZ00421 75 EGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWD 154 (493)
T ss_pred CCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEE
Confidence 47899999999 89999999999999999986531 23344468899999999986 6999999999999986
Q ss_pred ecCceeeeeeccccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeecCCCCc
Q 000731 145 HDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFM 224 (1325)
Q Consensus 145 ~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~~~ 224 (1325)
.. .+..+. .+.+|.+.+.+++|+|||.+|| +++ .|++|+|||..+|+...+..+|.+.
T Consensus 155 l~----tg~~~~-----------~l~~h~~~V~sla~spdG~lLa-tgs------~Dg~IrIwD~rsg~~v~tl~~H~~~ 212 (493)
T PTZ00421 155 VE----RGKAVE-----------VIKCHSDQITSLEWNLDGSLLC-TTS------KDKKLNIIDPRDGTIVSSVEAHASA 212 (493)
T ss_pred CC----CCeEEE-----------EEcCCCCceEEEEEECCCCEEE-Eec------CCCEEEEEECCCCcEEEEEecCCCC
Confidence 32 111111 1224567789999999999999 553 3689999999899998888877664
Q ss_pred -eeEEEEccCCCeEEEEecCCCCCCCCeEEEEeCCCceEEEEEe-ccCCCCcEEEEEEccCCCeeEEEEc-cCCCCeEEE
Q 000731 225 -GAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDI-NEQIDSTVELLKWNCMSDLLAAVVR-FEEYDSVKI 301 (1325)
Q Consensus 225 -v~~lawsPdG~~IAs~~~d~~~~~~~~V~~~e~nGl~~~~f~l-~~~~~~~V~~laWSpDg~~LAs~~~-d~~~~~VqL 301 (1325)
...+.|.|++..|++++..+. .++.|++||...... .+.. ..+....+....|+||+.+|++++. |+ .|++
T Consensus 213 ~~~~~~w~~~~~~ivt~G~s~s--~Dr~VklWDlr~~~~-p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg---~Iri 286 (493)
T PTZ00421 213 KSQRCLWAKRKDLIITLGCSKS--QQRQIMLWDTRKMAS-PYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEG---NIRC 286 (493)
T ss_pred cceEEEEcCCCCeEEEEecCCC--CCCeEEEEeCCCCCC-ceeEeccCCCCceEEEEEcCCCCEEEEEEeCCC---eEEE
Confidence 357889999998887765321 246899999542211 1111 1122335667789999999999874 77 8999
Q ss_pred EEeeCCeeEEEeEEEEecCCc-EEEEEccC
Q 000731 302 CFFSNNHWYLKYEIRYLRRDG-IRFMWHPT 330 (1325)
Q Consensus 302 W~~~n~~wylkqel~~~~~~~-~~v~Wsp~ 330 (1325)
|++.+.+.+.. ..+...++ ..+.|.|.
T Consensus 287 wdl~~~~~~~~--~~~~s~~~~~g~~~~pk 314 (493)
T PTZ00421 287 FELMNERLTFC--SSYSSVEPHKGLCMMPK 314 (493)
T ss_pred EEeeCCceEEE--eeccCCCCCcceEeccc
Confidence 99998765432 23322233 45556654
No 48
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.85 E-value=1.9e-19 Score=190.16 Aligned_cols=249 Identities=11% Similarity=0.071 Sum_probs=189.0
Q ss_pred ccccccceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEEC
Q 000731 16 LQSKDEILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTS 95 (1325)
Q Consensus 16 ~~~~~~~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~V~~v~~spdg~~La~as~ 95 (1325)
++-+...+..+.+.+|..-|..+.--+ |..+|++ +++-. .+.+ +.++ ...|++|.|..||+.+.+|++
T Consensus 36 iqh~dsqVNrLeiTpdk~~LAaa~~qh-vRlyD~~--S~np~-Pv~t----~e~h----~kNVtaVgF~~dgrWMyTgse 103 (311)
T KOG0315|consen 36 IQHPDSQVNRLEITPDKKDLAAAGNQH-VRLYDLN--SNNPN-PVAT----FEGH----TKNVTAVGFQCDGRWMYTGSE 103 (311)
T ss_pred EecCccceeeEEEcCCcchhhhccCCe-eEEEEcc--CCCCC-ceeE----Eecc----CCceEEEEEeecCeEEEecCC
Confidence 333333788899999998888877666 9999995 32211 1221 3322 468999999999999999999
Q ss_pred CCcEEEEeCCCCeEE-EeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeeeccccCCCceeccCccccCCC
Q 000731 96 SGLLLLHSVDGNATE-VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFS 174 (1325)
Q Consensus 96 dG~I~lw~~~~~~~e-~vg~~~~~I~~~awSPDG~~LA~~s~dgtV~l~s~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~ 174 (1325)
||+++|||+..-.+. ... |...|+++...|++.-|.++..+|.|.+|+-.-+.-+...+ +++ +.
T Consensus 104 Dgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~li-Pe~-------------~~ 168 (311)
T KOG0315|consen 104 DGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELI-PED-------------DT 168 (311)
T ss_pred CceEEEEeccCcccchhcc-CCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccC-CCC-------------Cc
Confidence 999999999875554 343 46899999999999999999999999887643222222222 221 23
Q ss_pred CeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeee------ecCCCCceeEEEEccCCCeEEEEecCCCCCC
Q 000731 175 FKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQAS------SELKAFMGAVLEWMPSGANIAAVYDRKSENK 248 (1325)
Q Consensus 175 ~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t------~e~~~~~v~~lawsPdG~~IAs~~~d~~~~~ 248 (1325)
.+.+++--|||.+++ .+ ...|...||+.-+++..+- +..|.+.+...-+|||+++||+++.|
T Consensus 169 ~i~sl~v~~dgsml~-a~------nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssd----- 236 (311)
T KOG0315|consen 169 SIQSLTVMPDGSMLA-AA------NNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSD----- 236 (311)
T ss_pred ceeeEEEcCCCcEEE-Ee------cCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCC-----
Confidence 568999999999998 33 2358899999855443332 44578888999999999999999996
Q ss_pred CCeEEEEeCCCceEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCe
Q 000731 249 CPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNH 308 (1325)
Q Consensus 249 ~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~n~~ 308 (1325)
.+|++|+..+-...+..+..+ +.+|++.+||.||++|.+++.|. +++||++.+.+
T Consensus 237 -ktv~iwn~~~~~kle~~l~gh-~rWvWdc~FS~dg~YlvTassd~---~~rlW~~~~~k 291 (311)
T KOG0315|consen 237 -KTVKIWNTDDFFKLELVLTGH-QRWVWDCAFSADGEYLVTASSDH---TARLWDLSAGK 291 (311)
T ss_pred -ceEEEEecCCceeeEEEeecC-CceEEeeeeccCccEEEecCCCC---ceeecccccCc
Confidence 469999988764455555443 57999999999999999999998 99999998753
No 49
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=1.1e-19 Score=202.93 Aligned_cols=292 Identities=14% Similarity=0.196 Sum_probs=202.8
Q ss_pred EEEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeeeccccCCCceeccCccccCCCCeEEEEEecCCcEE
Q 000731 109 TEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYF 188 (1325)
Q Consensus 109 ~e~vg~~~~~I~~~awSPDG~~LA~~s~dgtV~l~s~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~l 188 (1325)
..++..|.+.|+-+.|||+|++||++|.|.|..+|.-..|.--+. .++.. +|...|..|.||||.+|+
T Consensus 217 ~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl-~~tlv-----------gh~~~V~yi~wSPDdryL 284 (519)
T KOG0293|consen 217 WQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKL-KKTLV-----------GHSQPVSYIMWSPDDRYL 284 (519)
T ss_pred hhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceee-eeeee-----------cccCceEEEEECCCCCeE
Confidence 346667899999999999999999999999999986544432111 11111 566788999999999999
Q ss_pred EEeeccccccCCCCEEEEEECCCCceeeeecC-CCCceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeCCCceEEEEEe
Q 000731 189 ATLSEFCNSSKLHKRLKVWERDSGTLQASSEL-KAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDI 267 (1325)
Q Consensus 189 Atvss~d~~~~~d~~irVWd~~~G~l~~t~e~-~~~~v~~lawsPdG~~IAs~~~d~~~~~~~~V~~~e~nGl~~~~f~l 267 (1325)
.+++. +..+++||..+|.+...... +...+.+.+|.|||..+.+|+.| ..+.-|+.+|...+.+.
T Consensus 285 laCg~-------~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~d------r~i~~wdlDgn~~~~W~- 350 (519)
T KOG0293|consen 285 LACGF-------DEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPD------RTIIMWDLDGNILGNWE- 350 (519)
T ss_pred EecCc-------hHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCC------CcEEEecCCcchhhccc-
Confidence 86653 35699999999999887653 35667999999999999999886 46999999987655442
Q ss_pred ccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeEEEeEEEEe-cCCc-EEEEEccCCCcEEEEEecCCcEE
Q 000731 268 NEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYL-RRDG-IRFMWHPTKPLQLICWTLDGQIT 345 (1325)
Q Consensus 268 ~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~n~~wylkqel~~~-~~~~-~~v~Wsp~~~~~L~~~~~~g~~~ 345 (1325)
+.....|.+++.++||+.+.+.+.|. .|++++..... +.... ...+ +++.-|.+ |.+.
T Consensus 351 -gvr~~~v~dlait~Dgk~vl~v~~d~---~i~l~~~e~~~-----dr~lise~~~its~~iS~d-----------~k~~ 410 (519)
T KOG0293|consen 351 -GVRDPKVHDLAITYDGKYVLLVTVDK---KIRLYNREARV-----DRGLISEEQPITSFSISKD-----------GKLA 410 (519)
T ss_pred -ccccceeEEEEEcCCCcEEEEEeccc---ceeeechhhhh-----hhccccccCceeEEEEcCC-----------CcEE
Confidence 11234699999999999999888888 79999876421 11000 0111 33333333 2221
Q ss_pred EEEEEEeeeeCCCeeEEEEeCCEEEEeecCCcCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCC
Q 000731 346 TYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAP 425 (1325)
Q Consensus 346 ~~~~~~~~~~~d~~~v~viDG~~l~lt~l~~~~vPpPm~~~~l~~~~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~~~~~ 425 (1325)
. .....+.+.+|++....++.--..+ .....|..-.|.--. ...+|+|+.|+.|++|+...+
T Consensus 411 L---------------vnL~~qei~LWDl~e~~lv~kY~Gh--kq~~fiIrSCFgg~~-~~fiaSGSED~kvyIWhr~sg 472 (519)
T KOG0293|consen 411 L---------------VNLQDQEIHLWDLEENKLVRKYFGH--KQGHFIIRSCFGGGN-DKFIASGSEDSKVYIWHRISG 472 (519)
T ss_pred E---------------EEcccCeeEEeecchhhHHHHhhcc--cccceEEEeccCCCC-cceEEecCCCceEEEEEccCC
Confidence 1 1123345677777644333211110 112335444554332 168999999999999999887
Q ss_pred CccccccCCceeEeeeccccccCcEEEEEEecCC-eEEEEEecCCCCceEEEEe
Q 000731 426 DMLEDLEGTEFVVEACISETAFGSVIHLIWLGSH-LLLSVSHHGPRHSNYFRGA 478 (1325)
Q Consensus 426 ~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~-~lla~~~~~~~~~~~~~~~ 478 (1325)
..+.++.|| ...|..++|.|.+ .++|+++++ +++.+|..
T Consensus 473 kll~~LsGH------------s~~vNcVswNP~~p~m~ASasDD--gtIRIWg~ 512 (519)
T KOG0293|consen 473 KLLAVLSGH------------SKTVNCVSWNPADPEMFASASDD--GTIRIWGP 512 (519)
T ss_pred ceeEeecCC------------cceeeEEecCCCCHHHhhccCCC--CeEEEecC
Confidence 777777775 3579999999965 678888877 78889865
No 50
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.84 E-value=7.8e-19 Score=190.20 Aligned_cols=279 Identities=13% Similarity=0.164 Sum_probs=202.7
Q ss_pred CCCEEEEEEccCCCEEEEEECCCcEEEEeCCCC---eEEEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceee
Q 000731 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDGN---ATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLY 151 (1325)
Q Consensus 75 ~~~V~~v~~spdg~~La~as~dG~I~lw~~~~~---~~e~vg~~~~~I~~~awSPDG~~LA~~s~dgtV~l~s~~~d~~~ 151 (1325)
.+.|..+.|+|||..||+|+.|..|.||++.+. .....| |.+.|..+.|++||..|.+++.|.+|..| |..+
T Consensus 47 ~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkg-HsgAVM~l~~~~d~s~i~S~gtDk~v~~w----D~~t 121 (338)
T KOG0265|consen 47 KGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKG-HSGAVMELHGMRDGSHILSCGTDKTVRGW----DAET 121 (338)
T ss_pred cceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeecc-ccceeEeeeeccCCCEEEEecCCceEEEE----eccc
Confidence 478999999999999999999999999998763 122334 69999999999999999999999999664 5556
Q ss_pred eeeccccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeecCCCCceeEEEEc
Q 000731 152 ENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWM 231 (1325)
Q Consensus 152 e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~~~v~~laws 231 (1325)
+....- |++|.+-+.++.=+.-|..++ ++. ..|+++||||.+.-....+.+ ....+.+++|+
T Consensus 122 G~~~rk-----------~k~h~~~vNs~~p~rrg~~lv-~Sg-----sdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~ 183 (338)
T KOG0265|consen 122 GKRIRK-----------HKGHTSFVNSLDPSRRGPQLV-CSG-----SDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFK 183 (338)
T ss_pred ceeeeh-----------hccccceeeecCccccCCeEE-Eec-----CCCceEEEEeecccchhhccc-cceeEEEEEec
Confidence 555443 235555566676555677777 443 246999999987777777765 34557999999
Q ss_pred cCCCeEEEEecCCCCCCCCeEEEEeC-CCceEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeE
Q 000731 232 PSGANIAAVYDRKSENKCPSIVFYER-NGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWY 310 (1325)
Q Consensus 232 PdG~~IAs~~~d~~~~~~~~V~~~e~-nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~n~~wy 310 (1325)
-++..+-+|+-| +.|++|+. ++ ++.+++.++ ...|..|+-||+|..|-+-+-|. +|++||+.-++--
T Consensus 184 d~s~qv~sggId------n~ikvWd~r~~--d~~~~lsGh-~DtIt~lsls~~gs~llsnsMd~---tvrvwd~rp~~p~ 251 (338)
T KOG0265|consen 184 DTSDQVISGGID------NDIKVWDLRKN--DGLYTLSGH-ADTITGLSLSRYGSFLLSNSMDN---TVRVWDVRPFAPS 251 (338)
T ss_pred ccccceeecccc------CceeeeccccC--cceEEeecc-cCceeeEEeccCCCccccccccc---eEEEEEecccCCC
Confidence 999999999985 57999995 22 233456655 46899999999999999999888 9999999876642
Q ss_pred EEeEEEE--ecC--C--cEEEEEccCCCcEEEEEecCCcEEEEEEEEeeeeCCCeeEEEEeCCEEEEeecCCcCCCCCce
Q 000731 311 LKYEIRY--LRR--D--GIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMY 384 (1325)
Q Consensus 311 lkqel~~--~~~--~--~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDG~~l~lt~l~~~~vPpPm~ 384 (1325)
..+...| +.. + -...+|+|++.. +..++.| ...++|++.. .+ .
T Consensus 252 ~R~v~if~g~~hnfeknlL~cswsp~~~~-i~ags~d----r~vyvwd~~~--r~--------~---------------- 300 (338)
T KOG0265|consen 252 QRCVKIFQGHIHNFEKNLLKCSWSPNGTK-ITAGSAD----RFVYVWDTTS--RR--------I---------------- 300 (338)
T ss_pred CceEEEeecchhhhhhhcceeeccCCCCc-ccccccc----ceEEEeeccc--cc--------E----------------
Confidence 2222222 111 1 266789998764 2222222 2334555431 01 1
Q ss_pred eeee-cCCCCEEEEEEecCCCCCEEEEEECCCcEEEEe
Q 000731 385 LFSL-KFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVD 421 (1325)
Q Consensus 385 ~~~l-~~~~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~ 421 (1325)
.+.+ .|.+.|++|+|+|.- ..|-++++|.+|.|=+
T Consensus 301 lyklpGh~gsvn~~~Fhp~e--~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 301 LYKLPGHYGSVNEVDFHPTE--PIILSCSSDKTIYLGE 336 (338)
T ss_pred EEEcCCcceeEEEeeecCCC--cEEEEeccCceeEeec
Confidence 1223 367889999999998 8999999999998743
No 51
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.83 E-value=6.9e-19 Score=195.47 Aligned_cols=284 Identities=13% Similarity=0.177 Sum_probs=208.6
Q ss_pred CCCCCCEEEEEEccCCCEEEEEECCCcEEEEeCCCCeEE-EeceecCcEEEEEE-cCC--CCeEEEEeCCccEEEEeecC
Q 000731 72 LEPGDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATE-VVGRVEGGVRFISP-SPD--GDLLGVTTGFGQILVMTHDW 147 (1325)
Q Consensus 72 ~~~~~~V~~v~~spdg~~La~as~dG~I~lw~~~~~~~e-~vg~~~~~I~~~aw-SPD--G~~LA~~s~dgtV~l~s~~~ 147 (1325)
++..|.|.+|.-. ++.+.+|+-||++++|+..|.... ++| |.+.|.+++| .+| ..++++++.|+++.+|. |
T Consensus 102 ~~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~Gk~~~~~~G-ht~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~--~ 176 (423)
T KOG0313|consen 102 FLHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKGKSIKTIVG-HTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWK--W 176 (423)
T ss_pred ccchhhhhhhccc--CceEEEeecCCeeEEEecCCceEEEEec-CCcceeeeEEEecCCccceEEEecCCceEEEEE--e
Confidence 3335778787777 789999999999999999997665 566 5899998888 344 34699999999999985 3
Q ss_pred cee--eeeeccccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECC---------------
Q 000731 148 DLL--YENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERD--------------- 210 (1325)
Q Consensus 148 d~~--~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~--------------- 210 (1325)
++- ....+ .+-+||...|.+|+-.+||..|+ ++++ |.+++||+.+
T Consensus 177 ~~~~~~~~~~-----------~~~~GHk~~V~sVsv~~sgtr~~-SgS~------D~~lkiWs~~~~~~~~~E~~s~~rr 238 (423)
T KOG0313|consen 177 NVGENKVKAL-----------KVCRGHKRSVDSVSVDSSGTRFC-SGSW------DTMLKIWSVETDEEDELESSSNRRR 238 (423)
T ss_pred cCchhhhhHH-----------hHhcccccceeEEEecCCCCeEE-eecc------cceeeecccCCCccccccccchhhh
Confidence 321 11111 11227888999999999999999 7765 4899999910
Q ss_pred ----------CCceeeeecCCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeCCCceEEEEEeccCCCCcEEEEEE
Q 000731 211 ----------SGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKW 280 (1325)
Q Consensus 211 ----------~G~l~~t~e~~~~~v~~lawsPdG~~IAs~~~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laW 280 (1325)
++..+.++++|...|.+|-|++ ...+.|++.| ++|+.||.. .+.............+++.
T Consensus 239 k~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwD------HTIk~WDle---tg~~~~~~~~~ksl~~i~~ 308 (423)
T KOG0313|consen 239 KKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWD------HTIKVWDLE---TGGLKSTLTTNKSLNCISY 308 (423)
T ss_pred hhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeeccc------ceEEEEEee---cccceeeeecCcceeEeec
Confidence 1334566789999999999999 4567788875 789999942 1111111112346889999
Q ss_pred ccCCCeeEEEEccCCCCeEEEEEeeCCe-eEEEeEEEEecCCcEEEEEccCCCcEEEEEecCCcEEEEEEEEeeeeCCCe
Q 000731 281 NCMSDLLAAVVRFEEYDSVKICFFSNNH-WYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENS 359 (1325)
Q Consensus 281 SpDg~~LAs~~~d~~~~~VqLW~~~n~~-wylkqel~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~ 359 (1325)
+|.+.+||+++.|. .++|||-.+.. -..+|.+..|.+-...+.|+|.+.++|..++-|
T Consensus 309 ~~~~~Ll~~gssdr---~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D------------------ 367 (423)
T KOG0313|consen 309 SPLSKLLASGSSDR---HIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYD------------------ 367 (423)
T ss_pred ccccceeeecCCCC---ceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecC------------------
Confidence 99999999999999 89999976432 234566666655457899999998766555433
Q ss_pred eEEEEeCCEEEEeecCCcCCCCCceeeee-cCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCC
Q 000731 360 TALVIDGSKILVTPLSLSLMPPPMYLFSL-KFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLP 423 (1325)
Q Consensus 360 ~v~viDG~~l~lt~l~~~~vPpPm~~~~l-~~~~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~~~ 423 (1325)
+++++|++|-.- .||+ .+ .|.+.|.+|.|+..+ .+++|+.|++|+++.-.
T Consensus 368 -------~t~klWDvRS~k--~ply--dI~~h~DKvl~vdW~~~~---~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 368 -------NTVKLWDVRSTK--APLY--DIAGHNDKVLSVDWNEGG---LIVSGGADNKLRIFKGS 418 (423)
T ss_pred -------CeEEEEEeccCC--Ccce--eeccCCceEEEEeccCCc---eEEeccCcceEEEeccc
Confidence 356677766432 2454 55 589999999998765 89999999999998764
No 52
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.83 E-value=5.8e-17 Score=191.19 Aligned_cols=452 Identities=14% Similarity=0.127 Sum_probs=270.1
Q ss_pred eEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCC---EEEEEECCCcEE
Q 000731 24 QFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKE---ALIVGTSSGLLL 100 (1325)
Q Consensus 24 ~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~V~~v~~spdg~---~La~as~dG~I~ 100 (1325)
...+| .-++.+.++++.. |..||+ ... . .+.+ +.+| ...|++++|.|+++ .+++|+.||.|+
T Consensus 18 ~v~sw-~~~~~vafGa~~~-Iav~dp--~k~-~--i~t~----l~GH----~a~VnC~~~l~~s~~~a~~vsG~sD~~v~ 82 (764)
T KOG1063|consen 18 KVSSW-GPGGLVAFGAGPA-IAVADP--EKI-L--IVTT----LDGH----VARVNCVHWLPTSEIVAEMVSGDSDGRVI 82 (764)
T ss_pred ccccc-cccceEEecCCce-EEEeCc--ccc-e--eEEe----ccCC----ccceEEEEEcccccccceEEEccCCCcEE
Confidence 34455 3355566665554 888888 222 1 1222 4555 46899999999998 899999999999
Q ss_pred EEeCCCCeE-EEeceecC-cEEEEEEcCCCCeEEEEeCCccEEEEeecCcee---ee----------eeccccC-CCcee
Q 000731 101 LHSVDGNAT-EVVGRVEG-GVRFISPSPDGDLLGVTTGFGQILVMTHDWDLL---YE----------NPLEELA-EGFDV 164 (1325)
Q Consensus 101 lw~~~~~~~-e~vg~~~~-~I~~~awSPDG~~LA~~s~dgtV~l~s~~~d~~---~e----------~~l~~~~-~~~~V 164 (1325)
+|.+....+ .+.+ +++ .+.|++++.--........|+++.+|++.-+-+ .. .++.... ++.++
T Consensus 83 lW~l~~~~~~~i~~-~~g~~~~~~cv~a~~~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~l 161 (764)
T KOG1063|consen 83 LWKLRDEYLIKIYT-IQGHCKECVCVVARSSVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFL 161 (764)
T ss_pred EEEEeehheEEEEe-ecCcceeEEEEEeeeeEEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEE
Confidence 999874322 2222 222 566777775444444447899999998732220 00 0111111 11111
Q ss_pred c---------------cCccc------cCCCCeEEEEEecCCc---EEEEeeccccccCCCCEEEEEECCCCc-------
Q 000731 165 H---------------EPELS------SSFSFKSPISWRGDGK---YFATLSEFCNSSKLHKRLKVWERDSGT------- 213 (1325)
Q Consensus 165 s---------------~tqf~------~~~~~i~~isWspDG~---~lAtvss~d~~~~~d~~irVWd~~~G~------- 213 (1325)
. ..+|+ ||.|.|.+|+|+.-|. ++| ++ ++|+.||||...-+.
T Consensus 162 la~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~la-S~------SQD~yIRiW~i~~~~~~~~~~~ 234 (764)
T KOG1063|consen 162 LACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLA-SS------SQDRYIRIWRIVLGDDEDSNER 234 (764)
T ss_pred EEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEE-ec------CCceEEEEEEEEecCCcccccc
Confidence 1 22444 8999999999986654 566 44 357999999753221
Q ss_pred ------------------ee------eeecCCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeCC---CceEEEEE
Q 000731 214 ------------------LQ------ASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERN---GLERSSFD 266 (1325)
Q Consensus 214 ------------------l~------~t~e~~~~~v~~lawsPdG~~IAs~~~d~~~~~~~~V~~~e~n---Gl~~~~f~ 266 (1325)
.. ....+|+.+|.++-|+|+|..|.|++.|+ ++.+|++. |.-.....
T Consensus 235 e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDk------smiiW~pd~~tGiWv~~vR 308 (764)
T KOG1063|consen 235 EDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADK------SMIIWKPDENTGIWVDVVR 308 (764)
T ss_pred ccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheecccCc------ceEEEecCCccceEEEEEE
Confidence 11 11238999999999999998888888864 58889864 22111111
Q ss_pred ec--cCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEe-eCCeeEEEeEEEEecCCcEEEEEccCCCcEEEEEecCCc
Q 000731 267 IN--EQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFF-SNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQ 343 (1325)
Q Consensus 267 l~--~~~~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~-~n~~wylkqel~~~~~~~~~v~Wsp~~~~~L~~~~~~g~ 343 (1325)
+- ++....-+..-|||+|..+.+.+..| ..++|-. ++..|.....+..|-++...+.|+|++...|.+.+ |.+
T Consensus 309 lGe~gg~a~GF~g~lw~~n~~~ii~~g~~G---g~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~-DQT 384 (764)
T KOG1063|consen 309 LGEVGGSAGGFWGGLWSPNSNVIIAHGRTG---GFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSL-DQT 384 (764)
T ss_pred eecccccccceeeEEEcCCCCEEEEecccC---cEEEEeccCccceeeccccccccccceeeeecCCCCEEEEecc-ccc
Confidence 21 11134578899999999988888877 7999994 45667654445555455689999999976333332 222
Q ss_pred EEE-EEE----EEe-ee---------------eCCCeeEEE---------------------------------------
Q 000731 344 ITT-YNF----IWT-TA---------------VMENSTALV--------------------------------------- 363 (1325)
Q Consensus 344 ~~~-~~~----~~~-~~---------------~~d~~~v~v--------------------------------------- 363 (1325)
-.. ..| .|. ++ ..+...|..
T Consensus 385 TRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~V 464 (764)
T KOG1063|consen 385 TRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANV 464 (764)
T ss_pred eeeecccccccceeeecccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhccccccc
Confidence 111 000 000 00 001111111
Q ss_pred ---------------EeCCEE---EEeecCCc---CCCCCceeee------------ecCCCCEEEEEEecCCCCCEEEE
Q 000731 364 ---------------IDGSKI---LVTPLSLS---LMPPPMYLFS------------LKFPTAVTEMAFYSKSSKNCLAA 410 (1325)
Q Consensus 364 ---------------iDG~~l---~lt~l~~~---~vPpPm~~~~------------l~~~~~V~~VaFSpdg~~~~LAs 410 (1325)
-+|..- .=+|+... ...||+-.+- ..|.--|.+++-||+| +.+|+
T Consensus 465 paLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~g--nliAS 542 (764)
T KOG1063|consen 465 PALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTG--NLIAS 542 (764)
T ss_pred ccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCC--CEEee
Confidence 112110 11122211 1125553211 1245569999999999 99999
Q ss_pred EECC-----CcEEEEeCCCCCccccccCCceeEeeeccccccCcEEEEEEecCCeEEEEEecCCCCceEEEEeecccCcc
Q 000731 411 ILSD-----GCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGATLNEDGL 485 (1325)
Q Consensus 411 ~s~D-----gti~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~~~~~~~~~~~~~~~~~~ 485 (1325)
+... ..|.||+..+-...+++.|| .-+|.+++|+|||++|++.+.+ .++.+|....+.
T Consensus 543 aCKS~~~ehAvI~lw~t~~W~~~~~L~~H------------sLTVT~l~FSpdg~~LLsvsRD--Rt~sl~~~~~~~--- 605 (764)
T KOG1063|consen 543 ACKSSLKEHAVIRLWNTANWLQVQELEGH------------SLTVTRLAFSPDGRYLLSVSRD--RTVSLYEVQEDI--- 605 (764)
T ss_pred hhhhCCccceEEEEEeccchhhhheeccc------------ceEEEEEEECCCCcEEEEeecC--ceEEeeeeeccc---
Confidence 7543 46899998765444445554 3479999999999999988876 577888763111
Q ss_pred ccchhhhhhhhcccccccccccccccceeeeeecccCCcEE-EEeeCCCCCceEEEEeeCCeEEEEecc
Q 000731 486 LGFYAQEIELACSEDHVQGLLTCAGWHAKVSTQIPLEGLVI-AIAPNNAKKYSAFLQFHGGKISEYMSR 553 (1325)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~q~~dG~v~~~~~~ 553 (1325)
.+ ...+... ....+|+ ...++| +...++-.++|.+|..|...
T Consensus 606 ----------------~~--------e~~fa~~-k~HtRIIWdcsW~p-de~~FaTaSRDK~VkVW~~~ 648 (764)
T KOG1063|consen 606 ----------------KD--------EFRFACL-KAHTRIIWDCSWSP-DEKYFATASRDKKVKVWEEP 648 (764)
T ss_pred ----------------ch--------hhhhccc-cccceEEEEcccCc-ccceeEEecCCceEEEEecc
Confidence 00 0001111 1123344 345677 77878889999999999654
No 53
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.83 E-value=4.9e-19 Score=195.79 Aligned_cols=262 Identities=14% Similarity=0.117 Sum_probs=206.9
Q ss_pred eeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEEE
Q 000731 23 LQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLH 102 (1325)
Q Consensus 23 ~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~V~~v~~spdg~~La~as~dG~I~lw 102 (1325)
+...-+-|.--.++++|+|..|+.||. .+++. ...|++|. +.|.+|+|..-|+.||++++|=.+++|
T Consensus 111 vt~v~~hp~~~~v~~as~d~tikv~D~--~tg~~-------e~~LrGHt----~sv~di~~~a~Gk~l~tcSsDl~~~LW 177 (406)
T KOG0295|consen 111 VTRVIFHPSEALVVSASEDATIKVFDT--ETGEL-------ERSLRGHT----DSVFDISFDASGKYLATCSSDLSAKLW 177 (406)
T ss_pred eeeeeeccCceEEEEecCCceEEEEEc--cchhh-------hhhhhccc----cceeEEEEecCccEEEecCCccchhhe
Confidence 344446677788888999999999999 78774 12377773 569999999999999999999999999
Q ss_pred eCCCC--eEE-EeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeeeccccCCCceeccCccccCCCCeEEE
Q 000731 103 SVDGN--ATE-VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPI 179 (1325)
Q Consensus 103 ~~~~~--~~e-~vg~~~~~I~~~awSPDG~~LA~~s~dgtV~l~s~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~i 179 (1325)
|.++. .+. ..| |+.+|.+++|=|-|..|++++.|++|+.| +.-++.++.+ |.+|...+..|
T Consensus 178 d~~~~~~c~ks~~g-h~h~vS~V~f~P~gd~ilS~srD~tik~W----e~~tg~cv~t-----------~~~h~ewvr~v 241 (406)
T KOG0295|consen 178 DFDTFFRCIKSLIG-HEHGVSSVFFLPLGDHILSCSRDNTIKAW----ECDTGYCVKT-----------FPGHSEWVRMV 241 (406)
T ss_pred eHHHHHHHHHHhcC-cccceeeEEEEecCCeeeecccccceeEE----ecccceeEEe-----------ccCchHhEEEE
Confidence 99872 233 344 58899999999999999999999999876 4445555443 44677778999
Q ss_pred EEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeecCCCCceeEEEEccC---------------CCeEEEEecCC
Q 000731 180 SWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPS---------------GANIAAVYDRK 244 (1325)
Q Consensus 180 sWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~~~v~~lawsPd---------------G~~IAs~~~d~ 244 (1325)
.-..||..|| +.+ .+.+++||-..++++...+..|...+.+++|.|. |..++++++|
T Consensus 242 ~v~~DGti~A-s~s------~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrD- 313 (406)
T KOG0295|consen 242 RVNQDGTIIA-SCS------NDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRD- 313 (406)
T ss_pred EecCCeeEEE-ecC------CCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeeccc-
Confidence 9999999999 443 4689999999999888888889999999999884 2478888886
Q ss_pred CCCCCCeEEEEeCCCceEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeEEEeEEEEecCCcEE
Q 000731 245 SENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIR 324 (1325)
Q Consensus 245 ~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~n~~wylkqel~~~~~~~~~ 324 (1325)
.+|++||.+-- .--|+|.++ +++|.+++|+|-|++|++...|+ ++++||.+|.... ..+..++.-.++
T Consensus 314 -----ktIk~wdv~tg-~cL~tL~gh-dnwVr~~af~p~Gkyi~ScaDDk---tlrvwdl~~~~cm--k~~~ah~hfvt~ 381 (406)
T KOG0295|consen 314 -----KTIKIWDVSTG-MCLFTLVGH-DNWVRGVAFSPGGKYILSCADDK---TLRVWDLKNLQCM--KTLEAHEHFVTS 381 (406)
T ss_pred -----ceEEEEeccCC-eEEEEEecc-cceeeeeEEcCCCeEEEEEecCC---cEEEEEeccceee--eccCCCcceeEE
Confidence 56999996521 223566554 67999999999999999999999 9999999997642 233333333478
Q ss_pred EEEccCCCc
Q 000731 325 FMWHPTKPL 333 (1325)
Q Consensus 325 v~Wsp~~~~ 333 (1325)
+.||.+.|+
T Consensus 382 lDfh~~~p~ 390 (406)
T KOG0295|consen 382 LDFHKTAPY 390 (406)
T ss_pred EecCCCCce
Confidence 888888774
No 54
>PTZ00420 coronin; Provisional
Probab=99.82 E-value=7.8e-18 Score=207.11 Aligned_cols=226 Identities=9% Similarity=0.022 Sum_probs=156.9
Q ss_pred CCCEEEEEEccC-CCEEEEEECCCcEEEEeCCCCe---------EEEeceecCcEEEEEEcCCCCe-EEEEeCCccEEEE
Q 000731 75 GDSITAFDYLME-KEALIVGTSSGLLLLHSVDGNA---------TEVVGRVEGGVRFISPSPDGDL-LGVTTGFGQILVM 143 (1325)
Q Consensus 75 ~~~V~~v~~spd-g~~La~as~dG~I~lw~~~~~~---------~e~vg~~~~~I~~~awSPDG~~-LA~~s~dgtV~l~ 143 (1325)
.+.|.+++|+|+ +..||+|+.||+|++|++.++. +..+..|...|.+++|+|++.. ||+++.|++|++|
T Consensus 74 ~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIW 153 (568)
T PTZ00420 74 TSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIW 153 (568)
T ss_pred CCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEE
Confidence 468999999997 7899999999999999986421 1234557889999999999986 5789999999998
Q ss_pred ee-cCceeeeeeccccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeecCCC
Q 000731 144 TH-DWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKA 222 (1325)
Q Consensus 144 s~-~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~ 222 (1325)
+. ....+.... +.+.+.+++|+|||.+|| +++ .+++|+|||..+|+...+..+|.
T Consensus 154 Dl~tg~~~~~i~-----------------~~~~V~SlswspdG~lLa-t~s------~D~~IrIwD~Rsg~~i~tl~gH~ 209 (568)
T PTZ00420 154 DIENEKRAFQIN-----------------MPKKLSSLKWNIKGNLLS-GTC------VGKHMHIIDPRKQEIASSFHIHD 209 (568)
T ss_pred ECCCCcEEEEEe-----------------cCCcEEEEEECCCCCEEE-EEe------cCCEEEEEECCCCcEEEEEeccc
Confidence 63 222221111 224679999999999999 553 35899999998999998888888
Q ss_pred Ccee-----EEEEccCCCeEEEEecCCCCCCCCeEEEEeCCCc--eEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCC
Q 000731 223 FMGA-----VLEWMPSGANIAAVYDRKSENKCPSIVFYERNGL--ERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEE 295 (1325)
Q Consensus 223 ~~v~-----~lawsPdG~~IAs~~~d~~~~~~~~V~~~e~nGl--~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~ 295 (1325)
+.+. ...|+|++++|++++.+.. ....|++||...+ ....+.+... .+.+.....+++|.++++|..|+
T Consensus 210 g~~~s~~v~~~~fs~d~~~IlTtG~d~~--~~R~VkLWDlr~~~~pl~~~~ld~~-~~~L~p~~D~~tg~l~lsGkGD~- 285 (568)
T PTZ00420 210 GGKNTKNIWIDGLGGDDNYILSTGFSKN--NMREMKLWDLKNTTSALVTMSIDNA-SAPLIPHYDESTGLIYLIGKGDG- 285 (568)
T ss_pred CCceeEEEEeeeEcCCCCEEEEEEcCCC--CccEEEEEECCCCCCceEEEEecCC-ccceEEeeeCCCCCEEEEEECCC-
Confidence 7543 3346799999999887631 1247999995421 1222222211 12233343456699999999998
Q ss_pred CCeEEEEEeeCCeeEEEeEEEEecCCc-EEEEEccCCC
Q 000731 296 YDSVKICFFSNNHWYLKYEIRYLRRDG-IRFMWHPTKP 332 (1325)
Q Consensus 296 ~~~VqLW~~~n~~wylkqel~~~~~~~-~~v~Wsp~~~ 332 (1325)
+|++|++.... +..--.+....+ ..+.|.|...
T Consensus 286 --tIr~~e~~~~~--~~~l~~~~s~~p~~g~~f~Pkr~ 319 (568)
T PTZ00420 286 --NCRYYQHSLGS--IRKVNEYKSCSPFRSFGFLPKQI 319 (568)
T ss_pred --eEEEEEccCCc--EEeecccccCCCccceEEccccc
Confidence 99999986542 111111222233 5677887654
No 55
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=4e-17 Score=190.02 Aligned_cols=235 Identities=12% Similarity=0.153 Sum_probs=192.2
Q ss_pred CCCEEEEEEccCCCEEEEEECCCcEEEEeCCCCeE-EEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEee-cCceeee
Q 000731 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNAT-EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTH-DWDLLYE 152 (1325)
Q Consensus 75 ~~~V~~v~~spdg~~La~as~dG~I~lw~~~~~~~-e~vg~~~~~I~~~awSPDG~~LA~~s~dgtV~l~s~-~~d~~~e 152 (1325)
.++|-+|+|+|....+..+--+|+|.|||.+++.+ ..+.-.+-+|+++.|=+--+++++|+.|..|++.+- ..+.+
T Consensus 13 SdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV-- 90 (794)
T KOG0276|consen 13 SDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKV-- 90 (794)
T ss_pred CCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceee--
Confidence 46999999999999999999999999999998654 333334678999999999999999999999988752 12211
Q ss_pred eeccccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCC-ceeeeecCCCCceeEEEEc
Q 000731 153 NPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSG-TLQASSELKAFMGAVLEWM 231 (1325)
Q Consensus 153 ~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G-~l~~t~e~~~~~v~~laws 231 (1325)
.+|.+|++-+.+|+-.|.--|+. +|| .|-+||+||-+.+ .+..++++|...|..|+|.
T Consensus 91 --------------~~FeAH~DyIR~iavHPt~P~vL-tsS------DDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fn 149 (794)
T KOG0276|consen 91 --------------KTFEAHSDYIRSIAVHPTLPYVL-TSS------DDMTIKLWDWENEWACEQTFEGHEHYVMQVAFN 149 (794)
T ss_pred --------------EEeeccccceeeeeecCCCCeEE-ecC------CccEEEEeeccCceeeeeEEcCcceEEEEEEec
Confidence 25678889999999999999998 553 3689999998433 5777899999999999999
Q ss_pred c-CCCeEEEEecCCCCCCCCeEEEEeCCCceEEEEEeccCCCCcEEEEEEccCC--CeeEEEEccCCCCeEEEEEeeCCe
Q 000731 232 P-SGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMS--DLLAAVVRFEEYDSVKICFFSNNH 308 (1325)
Q Consensus 232 P-dG~~IAs~~~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg--~~LAs~~~d~~~~~VqLW~~~n~~ 308 (1325)
| |-+..||++-| .+|++|.. |..+-.|+|.+| +..|+++.+=|-| -+|.+|+.|. +|++||..|..
T Consensus 150 PkD~ntFaS~sLD------rTVKVWsl-gs~~~nfTl~gH-ekGVN~Vdyy~~gdkpylIsgaDD~---tiKvWDyQtk~ 218 (794)
T KOG0276|consen 150 PKDPNTFASASLD------RTVKVWSL-GSPHPNFTLEGH-EKGVNCVDYYTGGDKPYLISGADDL---TIKVWDYQTKS 218 (794)
T ss_pred CCCccceeeeecc------ccEEEEEc-CCCCCceeeecc-ccCcceEEeccCCCcceEEecCCCc---eEEEeecchHH
Confidence 9 56899999997 46999985 455667888855 5679999998766 4899999998 99999988754
Q ss_pred eEEEeEEEEecCCcEEEEEccCCCcEEEEEecCCcEEE
Q 000731 309 WYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITT 346 (1325)
Q Consensus 309 wylkqel~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~ 346 (1325)
+ .|++..|.++...+.|||+-|. +..++.||++.+
T Consensus 219 C--V~TLeGHt~Nvs~v~fhp~lpi-iisgsEDGTvri 253 (794)
T KOG0276|consen 219 C--VQTLEGHTNNVSFVFFHPELPI-IISGSEDGTVRI 253 (794)
T ss_pred H--HHHhhcccccceEEEecCCCcE-EEEecCCccEEE
Confidence 3 4678888777788999999986 667777888754
No 56
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=1.9e-16 Score=187.05 Aligned_cols=446 Identities=15% Similarity=0.113 Sum_probs=264.7
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEE
Q 000731 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1325)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~V~~v~~spdg~~La~as~dG~I~l 101 (1325)
.++++||...++.|..+-.++.|-.|++. .+-..-.+ +.+ -+...|-+++|+ +|..|-+.+.+|.|.-
T Consensus 27 ~I~slA~s~kS~~lAvsRt~g~IEiwN~~--~~w~~~~v------i~g---~~drsIE~L~W~-e~~RLFS~g~sg~i~E 94 (691)
T KOG2048|consen 27 EIVSLAYSHKSNQLAVSRTDGNIEIWNLS--NNWFLEPV------IHG---PEDRSIESLAWA-EGGRLFSSGLSGSITE 94 (691)
T ss_pred ceEEEEEeccCCceeeeccCCcEEEEccC--CCceeeEE------Eec---CCCCceeeEEEc-cCCeEEeecCCceEEE
Confidence 79999999999999999889989999993 32211111 111 124789999999 5556778889999999
Q ss_pred EeCCCCeEE-EeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCcee-eeeeccccCCCceeccCccccCCCCeEEE
Q 000731 102 HSVDGNATE-VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLL-YENPLEELAEGFDVHEPELSSSFSFKSPI 179 (1325)
Q Consensus 102 w~~~~~~~e-~vg~~~~~I~~~awSPDG~~LA~~s~dgtV~l~s~~~d~~-~e~~l~~~~~~~~Vs~tqf~~~~~~i~~i 179 (1325)
||+.+.+.. ......+.||+++.+|-+..|++++.||.+...+-.-+.+ +...+. -..+++.++
T Consensus 95 wDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~--------------rq~sRvLsl 160 (691)
T KOG2048|consen 95 WDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLM--------------RQKSRVLSL 160 (691)
T ss_pred EecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecc--------------cccceEEEE
Confidence 999886443 3444457799999999999999999999665544332332 222222 123678999
Q ss_pred EEecCCcEEEEeeccccccCCCCEEEEEECCCCceeee--------ecCCCCceeEEEEccCCCeEEEEecCCCCCCCCe
Q 000731 180 SWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQAS--------SELKAFMGAVLEWMPSGANIAAVYDRKSENKCPS 251 (1325)
Q Consensus 180 sWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t--------~e~~~~~v~~lawsPdG~~IAs~~~d~~~~~~~~ 251 (1325)
+|.|+|..+| .|+. |+.||+||...|..... ++...-.+++|.|=.+| .||||.. .++
T Consensus 161 sw~~~~~~i~-~Gs~------Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS------~G~ 226 (691)
T KOG2048|consen 161 SWNPTGTKIA-GGSI------DGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDS------AGT 226 (691)
T ss_pred EecCCccEEE-eccc------CceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecC------Cce
Confidence 9999999888 6654 58999999988876652 11123345666665555 5776644 578
Q ss_pred EEEEeC-CCceEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCC-eeEEEeEEEEecCCcEEEEEcc
Q 000731 252 IVFYER-NGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNN-HWYLKYEIRYLRRDGIRFMWHP 329 (1325)
Q Consensus 252 V~~~e~-nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~n~-~wylkqel~~~~~~~~~v~Wsp 329 (1325)
|.|||. +|.....+.. +...|.+|+=++++..+.+++.|++ ++++-...|. .|.......+|..+..+++-.+
T Consensus 227 V~FWd~~~gTLiqS~~~---h~adVl~Lav~~~~d~vfsaGvd~~--ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~ 301 (691)
T KOG2048|consen 227 VTFWDSIFGTLIQSHSC---HDADVLALAVADNEDRVFSAGVDPK--IIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIE 301 (691)
T ss_pred EEEEcccCcchhhhhhh---hhcceeEEEEcCCCCeEEEccCCCc--eEEEEecCCccceeeeccccCCcccceeeeeec
Confidence 999994 4544332222 3567999999999999999999882 4444444332 2533222333434443333222
Q ss_pred CCCcEEEEEecCCcEEEEE--------EE-EeeeeCCC--------eeEEEEeCCEEEEeecCCcCCCC---C---ceee
Q 000731 330 TKPLQLICWTLDGQITTYN--------FI-WTTAVMEN--------STALVIDGSKILVTPLSLSLMPP---P---MYLF 386 (1325)
Q Consensus 330 ~~~~~L~~~~~~g~~~~~~--------~~-~~~~~~d~--------~~v~viDG~~l~lt~l~~~~vPp---P---m~~~ 386 (1325)
. .|..+..++.+.+.. .. -.+.+... .+...+-...+.+|.+. ..+|. + ++..
T Consensus 302 ~---~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~~~~L~~~w~~h~v~lwrlG-S~~~~g~~~~~~Llkl 377 (691)
T KOG2048|consen 302 N---ALISGGRDFTLAICSSREFKNMDHRQKNLFPASDRVSVAPENRLLVLWKAHGVDLWRLG-SVILQGEYNYIHLLKL 377 (691)
T ss_pred c---eEEecceeeEEEEccccccCchhhhccccccccceeecCccceEEEEeccccccceecc-CcccccccChhhheee
Confidence 2 122211122221100 00 00001111 12222333333344332 22222 1 1222
Q ss_pred eecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCcc---------ccc----------cCCc--------eeEe
Q 000731 387 SLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDML---------EDL----------EGTE--------FVVE 439 (1325)
Q Consensus 387 ~l~~~~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~~~~~~~~---------~~~----------~g~~--------~~~~ 439 (1325)
.+.-...|.+-|.||+| +.||.++-. .++||.+...... ..+ .++. +.+.
T Consensus 378 ~~k~~~nIs~~aiSPdg--~~Ia~st~~-~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le 454 (691)
T KOG2048|consen 378 FTKEKENISCAAISPDG--NLIAISTVS-RTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLE 454 (691)
T ss_pred ecCCccceeeeccCCCC--CEEEEeecc-ceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEEecccceeE
Confidence 22345679999999999 899888643 4555555320000 000 0000 0000
Q ss_pred e------------ecc-ccccCcEEEEEEecCCeEEEEEecCCCCceEEEEeecccCccccchhhhhhhhcccccccccc
Q 000731 440 A------------CIS-ETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGATLNEDGLLGFYAQEIELACSEDHVQGLL 506 (1325)
Q Consensus 440 ~------------~~~-~~~~~~v~~l~~~~d~~lla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (1325)
. ... ....+.+.+++-+++|.++|+.+.. ..+.+|++. + .
T Consensus 455 ~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~--g~I~v~nl~--~------------------~----- 507 (691)
T KOG2048|consen 455 EFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAISTR--GQIFVYNLE--T------------------L----- 507 (691)
T ss_pred EEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEecc--ceEEEEEcc--c------------------c-----
Confidence 0 000 1122478899999999999987743 455666552 1 0
Q ss_pred cccccceeeeee-cccCCcEEEEeeCCCCCceEEEEeeCCeEEEEecc
Q 000731 507 TCAGWHAKVSTQ-IPLEGLVIAIAPNNAKKYSAFLQFHGGKISEYMSR 553 (1325)
Q Consensus 507 ~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~q~~dG~v~~~~~~ 553 (1325)
..... ..++..|+....+|.+.+.+++.+.|++|++|+.+
T Consensus 508 -------~~~~l~~rln~~vTa~~~~~~~~~~lvvats~nQv~efdi~ 548 (691)
T KOG2048|consen 508 -------ESHLLKVRLNIDVTAAAFSPFVRNRLVVATSNNQVFEFDIE 548 (691)
T ss_pred -------eeecchhccCcceeeeeccccccCcEEEEecCCeEEEEecc
Confidence 01111 23456677777776689999999999999999774
No 57
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.82 E-value=5.2e-19 Score=201.92 Aligned_cols=300 Identities=15% Similarity=0.131 Sum_probs=198.6
Q ss_pred CCEEEEEEccCCCEEEEEECCCcEEEEeCCCCe-----EE-EeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCce
Q 000731 76 DSITAFDYLMEKEALIVGTSSGLLLLHSVDGNA-----TE-VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDL 149 (1325)
Q Consensus 76 ~~V~~v~~spdg~~La~as~dG~I~lw~~~~~~-----~e-~vg~~~~~I~~~awSPDG~~LA~~s~dgtV~l~s~~~d~ 149 (1325)
..|.++++-|.|-.|++|+-|-+|++||.++.- .. +...-...|++++|||.|+.|+.+++..+.+|.+|++-.
T Consensus 168 k~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~ 247 (641)
T KOG0772|consen 168 KIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFE 247 (641)
T ss_pred eEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEccCCce
Confidence 357889999999999999999999999998621 11 111112359999999999999999999999999998877
Q ss_pred eeeeeccccCCCceec-cCccccCCCCeEEEEEecCCc-EEEEeeccccccCCCCEEEEEECCCCc-eeeeec-----CC
Q 000731 150 LYENPLEELAEGFDVH-EPELSSSFSFKSPISWRGDGK-YFATLSEFCNSSKLHKRLKVWERDSGT-LQASSE-----LK 221 (1325)
Q Consensus 150 ~~e~~l~~~~~~~~Vs-~tqf~~~~~~i~~isWspDG~-~lAtvss~d~~~~~d~~irVWd~~~G~-l~~t~e-----~~ 221 (1325)
+.+..-.. +.|. -..-+||...+.+.+|.|+.+ .|.|+| .|+++||||.+.-+ ...... +.
T Consensus 248 ~~e~~KGD----QYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s-------~DgtlRiWdv~~~k~q~qVik~k~~~g~ 316 (641)
T KOG0772|consen 248 IVEFSKGD----QYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCS-------YDGTLRIWDVNNTKSQLQVIKTKPAGGK 316 (641)
T ss_pred eeeeeccc----hhhhhhhccCCceeeeeccccccCcccceEEec-------CCCcEEEEecCCchhheeEEeeccCCCc
Confidence 76654221 1121 011125667889999999975 455343 36899999985432 122222 12
Q ss_pred CCceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeCCCce-EEEEEeccCCC--CcEEEEEEccCCCeeEEEEccCCCCe
Q 000731 222 AFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLE-RSSFDINEQID--STVELLKWNCMSDLLAAVVRFEEYDS 298 (1325)
Q Consensus 222 ~~~v~~lawsPdG~~IAs~~~d~~~~~~~~V~~~e~nGl~-~~~f~l~~~~~--~~V~~laWSpDg~~LAs~~~d~~~~~ 298 (1325)
.-.+.+.+|+|||++||+|..| +.|.+|+.-++. +-.+.++..|. ..|.+|+||+||++|++.+.|. +
T Consensus 317 Rv~~tsC~~nrdg~~iAagc~D------GSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~---t 387 (641)
T KOG0772|consen 317 RVPVTSCAWNRDGKLIAAGCLD------GSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDD---T 387 (641)
T ss_pred ccCceeeecCCCcchhhhcccC------CceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCC---c
Confidence 2246899999999999999986 569999963322 22344442222 3799999999999999999998 9
Q ss_pred EEEEEeeCCeeEEEeEEEEec-CCcEEEEEccCCCcEEEEEecCCcEEEEEEEEeeeeCC--CeeEEEEeCCEEEEeecC
Q 000731 299 VKICFFSNNHWYLKYEIRYLR-RDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVME--NSTALVIDGSKILVTPLS 375 (1325)
Q Consensus 299 VqLW~~~n~~wylkqel~~~~-~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d--~~~v~viDG~~l~lt~l~ 375 (1325)
+++||+.|..--|.--.-... -..+.++|||+... +..++. + +.+ .+...+-|-.++-
T Consensus 388 LKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kl-i~TGtS---~----------~~~~~~g~L~f~d~~t~d----- 448 (641)
T KOG0772|consen 388 LKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKL-ILTGTS---A----------PNGMTAGTLFFFDRMTLD----- 448 (641)
T ss_pred eeeeeccccccchhhhcCCCccCCCCccccCCCceE-EEeccc---c----------cCCCCCceEEEEecccee-----
Confidence 999999986422211000000 12267899998753 323221 0 111 1122222222210
Q ss_pred CcCCCCCceeeeecC-CCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCC
Q 000731 376 LSLMPPPMYLFSLKF-PTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPA 424 (1325)
Q Consensus 376 ~~~vPpPm~~~~l~~-~~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~~~~ 424 (1325)
..+.+.. ...|..+.|+|.- +.|.+++.||++++|--++
T Consensus 449 --------~v~ki~i~~aSvv~~~WhpkL--NQi~~gsgdG~~~vyYdp~ 488 (641)
T KOG0772|consen 449 --------TVYKIDISTASVVRCLWHPKL--NQIFAGSGDGTAHVYYDPN 488 (641)
T ss_pred --------eEEEecCCCceEEEEeecchh--hheeeecCCCceEEEECcc
Confidence 0122222 4568899999998 8899999999999986543
No 58
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=1.6e-17 Score=172.63 Aligned_cols=289 Identities=15% Similarity=0.078 Sum_probs=204.3
Q ss_pred CCCEEEEEEccCCCEEEEEECCCcEEEEeCC------C-----C-----eEEEeceecCcEEEEEEcCCCCeEEEEeCCc
Q 000731 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVD------G-----N-----ATEVVGRVEGGVRFISPSPDGDLLGVTTGFG 138 (1325)
Q Consensus 75 ~~~V~~v~~spdg~~La~as~dG~I~lw~~~------~-----~-----~~e~vg~~~~~I~~~awSPDG~~LA~~s~dg 138 (1325)
...|.+|+|+|.|...|+|+...++++.... . . .+..-.+|.+.|.|.+|||+|++||+++.|+
T Consensus 32 sqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk 111 (350)
T KOG0641|consen 32 SQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDK 111 (350)
T ss_pred hhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCCc
Confidence 4679999999999999999999999986421 1 0 1233456789999999999999999999999
Q ss_pred cEEEEeecCceeeeeeccccCCCceeccCccccCCCCeEEEEEecC----CcEEEEeeccccccCCCCEEEEEECCCCce
Q 000731 139 QILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGD----GKYFATLSEFCNSSKLHKRLKVWERDSGTL 214 (1325)
Q Consensus 139 tV~l~s~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspD----G~~lAtvss~d~~~~~d~~irVWd~~~G~l 214 (1325)
+|++|--+-+ +...... +..|.-||+.|..++|--| |..|| +++ .+|+.|.+-|-.+|+-
T Consensus 112 ~ik~l~fn~d--t~~~~g~--------dle~nmhdgtirdl~fld~~~s~~~il~-s~g-----agdc~iy~tdc~~g~~ 175 (350)
T KOG0641|consen 112 TIKVLPFNAD--TCNATGH--------DLEFNMHDGTIRDLAFLDDPESGGAILA-SAG-----AGDCKIYITDCGRGQG 175 (350)
T ss_pred eEEEEecccc--cccccCc--------ceeeeecCCceeeeEEecCCCcCceEEE-ecC-----CCcceEEEeecCCCCc
Confidence 9999742212 1111111 2245568888999999543 56777 543 4678999989888998
Q ss_pred eeeecCCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeCCCc-eEEEEEec--cC----CCCcEEEEEEccCCCee
Q 000731 215 QASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGL-ERSSFDIN--EQ----IDSTVELLKWNCMSDLL 287 (1325)
Q Consensus 215 ~~t~e~~~~~v~~lawsPdG~~IAs~~~d~~~~~~~~V~~~e~nGl-~~~~f~l~--~~----~~~~V~~laWSpDg~~L 287 (1325)
.....+|.|.+-++ ++=+|.++||++.| .+|+||+..-. ... ++. .+ ....|.+++-.|.|++|
T Consensus 176 ~~a~sghtghilal-yswn~~m~~sgsqd------ktirfwdlrv~~~v~--~l~~~~~~~glessavaav~vdpsgrll 246 (350)
T KOG0641|consen 176 FHALSGHTGHILAL-YSWNGAMFASGSQD------KTIRFWDLRVNSCVN--TLDNDFHDGGLESSAVAAVAVDPSGRLL 246 (350)
T ss_pred ceeecCCcccEEEE-EEecCcEEEccCCC------ceEEEEeeeccceee--eccCcccCCCcccceeEEEEECCCccee
Confidence 88888999988665 34478999999986 46999994210 000 111 01 13569999999999999
Q ss_pred EEEEccCCCCeEEEEEeeCCeeEEEeEEEEecCCcEEEEEccCCCcEEEEEecCCcEEEEEEEEeeeeCCCeeEEEEeCC
Q 000731 288 AAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGS 367 (1325)
Q Consensus 288 As~~~d~~~~~VqLW~~~n~~wylkqel~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDG~ 367 (1325)
|++-.|. .-.|+|+....- .|.+.-+..+..+|.|+|...+.| ..+ + +.
T Consensus 247 ~sg~~ds---sc~lydirg~r~--iq~f~phsadir~vrfsp~a~yll-t~s----y---------------------d~ 295 (350)
T KOG0641|consen 247 ASGHADS---SCMLYDIRGGRM--IQRFHPHSADIRCVRFSPGAHYLL-TCS----Y---------------------DM 295 (350)
T ss_pred eeccCCC---ceEEEEeeCCce--eeeeCCCccceeEEEeCCCceEEE-Eec----c---------------------cc
Confidence 9999998 899999887642 233322223448899999654422 111 1 13
Q ss_pred EEEEeecCCcCC--CCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCC
Q 000731 368 KILVTPLSLSLM--PPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLP 423 (1325)
Q Consensus 368 ~l~lt~l~~~~v--PpPm~~~~l~~~~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~~~ 423 (1325)
.|++|++.+... -|-|- .-+|.+.+....|+|.. -.+.+.+.|.++.||.++
T Consensus 296 ~ikltdlqgdla~el~~~v--v~ehkdk~i~~rwh~~d--~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 296 KIKLTDLQGDLAHELPIMV--VAEHKDKAIQCRWHPQD--FSFISSSADKTATLWALN 349 (350)
T ss_pred eEEEeecccchhhcCceEE--EEeccCceEEEEecCcc--ceeeeccCcceEEEeccC
Confidence 567777765432 12232 23688999999999997 678899999999999764
No 59
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.81 E-value=8.5e-18 Score=177.84 Aligned_cols=281 Identities=14% Similarity=0.127 Sum_probs=194.0
Q ss_pred CEEEEEECCCcEEEEeCCCCeEE-EeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeeeccccCCCceecc
Q 000731 88 EALIVGTSSGLLLLHSVDGNATE-VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHE 166 (1325)
Q Consensus 88 ~~La~as~dG~I~lw~~~~~~~e-~vg~~~~~I~~~awSPDG~~LA~~s~dgtV~l~s~~~d~~~e~~l~~~~~~~~Vs~ 166 (1325)
-+|++++-|.||++|...+|.+. .+.+-++-|+++..+||++.||.|+.- .|++++ .-+..+- +|
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~q-hvRlyD----~~S~np~-------Pv-- 76 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQ-HVRLYD----LNSNNPN-------PV-- 76 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccCC-eeEEEE----ccCCCCC-------ce--
Confidence 47899999999999999999875 667667889999999999999988664 787754 2221110 01
Q ss_pred CccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeecCCCCceeEEEEccCCCeEEEEecCCCC
Q 000731 167 PELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSE 246 (1325)
Q Consensus 167 tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~~~v~~lawsPdG~~IAs~~~d~~~ 246 (1325)
..|-+|...|..|.|--||++.. +++ +|+++||||.+.-.++..++ +...|++|...|+-.-|.++..
T Consensus 77 ~t~e~h~kNVtaVgF~~dgrWMy-Tgs------eDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLis~dq---- 144 (311)
T KOG0315|consen 77 ATFEGHTKNVTAVGFQCDGRWMY-TGS------EDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQ---- 144 (311)
T ss_pred eEEeccCCceEEEEEeecCeEEE-ecC------CCceEEEEeccCcccchhcc-CCCCcceEEecCCcceEEeecC----
Confidence 12335666789999999999999 553 57999999987766666666 5588999999998777776655
Q ss_pred CCCCeEEEEeCCCceEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeEEEe-----EEEEecCC
Q 000731 247 NKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKY-----EIRYLRRD 321 (1325)
Q Consensus 247 ~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~n~~wylkq-----el~~~~~~ 321 (1325)
.+.|++||.-......--+|+. ...|.+++--|||++||.+...| ...+|++-+. -...+ .+..+...
T Consensus 145 --sg~irvWDl~~~~c~~~liPe~-~~~i~sl~v~~dgsml~a~nnkG---~cyvW~l~~~-~~~s~l~P~~k~~ah~~~ 217 (311)
T KOG0315|consen 145 --SGNIRVWDLGENSCTHELIPED-DTSIQSLTVMPDGSMLAAANNKG---NCYVWRLLNH-QTASELEPVHKFQAHNGH 217 (311)
T ss_pred --CCcEEEEEccCCccccccCCCC-CcceeeEEEcCCCcEEEEecCCc---cEEEEEccCC-CccccceEhhheecccce
Confidence 3569999953222221123333 35799999999999999998887 8999998762 11111 11122122
Q ss_pred cEEEEEccCCCcEEEEEecCCcEEEEEEEEeeeeCCCeeEEEEeCCEEEEeecCCcCCCCCceeeee-cCCCCEEEEEEe
Q 000731 322 GIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSL-KFPTAVTEMAFY 400 (1325)
Q Consensus 322 ~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDG~~l~lt~l~~~~vPpPm~~~~l-~~~~~V~~VaFS 400 (1325)
.....+||++.+ |+..+.+ +++++|....- + |-..++ .|..+|++.+||
T Consensus 218 il~C~lSPd~k~-lat~ssd-------------------------ktv~iwn~~~~-~---kle~~l~gh~rWvWdc~FS 267 (311)
T KOG0315|consen 218 ILRCLLSPDVKY-LATCSSD-------------------------KTVKIWNTDDF-F---KLELVLTGHQRWVWDCAFS 267 (311)
T ss_pred EEEEEECCCCcE-EEeecCC-------------------------ceEEEEecCCc-e---eeEEEeecCCceEEeeeec
Confidence 256677777654 4333333 33333332211 0 111223 367899999999
Q ss_pred cCCCCCEEEEEECCCcEEEEeCCCCCccccccC
Q 000731 401 SKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEG 433 (1325)
Q Consensus 401 pdg~~~~LAs~s~Dgti~lw~~~~~~~~~~~~g 433 (1325)
.|| .+|+++++|+++++|++..........|
T Consensus 268 ~dg--~YlvTassd~~~rlW~~~~~k~v~qy~g 298 (311)
T KOG0315|consen 268 ADG--EYLVTASSDHTARLWDLSAGKEVRQYQG 298 (311)
T ss_pred cCc--cEEEecCCCCceeecccccCceeeecCC
Confidence 999 8999999999999999986544433344
No 60
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=5.2e-18 Score=184.38 Aligned_cols=294 Identities=15% Similarity=0.132 Sum_probs=193.9
Q ss_pred cccccCCCCCCEEEEEEccCCCEEEEEECCCcEEEEeCCCCe------EE-EeceecCcEEEEEEcCCCCeEEEEeCCc-
Q 000731 67 IEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNA------TE-VVGRVEGGVRFISPSPDGDLLGVTTGFG- 138 (1325)
Q Consensus 67 l~~~~~~~~~~V~~v~~spdg~~La~as~dG~I~lw~~~~~~------~e-~vg~~~~~I~~~awSPDG~~LA~~s~dg- 138 (1325)
|++| ++.|++++||.||+.||+++.||+|+||+++.-. +. .+. -+.-+.++|+||-+-++..-..|
T Consensus 82 LKgH----~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve--~dhpT~V~FapDc~s~vv~~~~g~ 155 (420)
T KOG2096|consen 82 LKGH----KKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVE--YDHPTRVVFAPDCKSVVVSVKRGN 155 (420)
T ss_pred hhcc----CCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhcccc--CCCceEEEECCCcceEEEEEccCC
Confidence 5555 5799999999999999999999999999987511 11 122 12468899999988776664433
Q ss_pred cEEEEe--ecCceeeeeeccccCCCceeccCccc-cCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCcee
Q 000731 139 QILVMT--HDWDLLYENPLEELAEGFDVHEPELS-SSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQ 215 (1325)
Q Consensus 139 tV~l~s--~~~d~~~e~~l~~~~~~~~Vs~tqf~-~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~ 215 (1325)
++.++. +.-|- ..++ +.-++....|+ -|.-.+..|--.+.++|++ +++. +.+|.+|+. .|+++
T Consensus 156 ~l~vyk~~K~~dG--~~~~----~~v~~D~~~f~~kh~v~~i~iGiA~~~k~im-sas~------dt~i~lw~l-kGq~L 221 (420)
T KOG2096|consen 156 KLCVYKLVKKTDG--SGSH----HFVHIDNLEFERKHQVDIINIGIAGNAKYIM-SASL------DTKICLWDL-KGQLL 221 (420)
T ss_pred EEEEEEeeecccC--CCCc----ccccccccccchhcccceEEEeecCCceEEE-EecC------CCcEEEEec-CCcee
Confidence 454432 11110 0000 00111111122 2444567788889999999 4443 579999999 69998
Q ss_pred eeecCCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeC----CCceE---EEEEeccCCCCcEEEEEEccCCCeeE
Q 000731 216 ASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYER----NGLER---SSFDINEQIDSTVELLKWNCMSDLLA 288 (1325)
Q Consensus 216 ~t~e~~~~~v~~lawsPdG~~IAs~~~d~~~~~~~~V~~~e~----nGl~~---~~f~l~~~~~~~V~~laWSpDg~~LA 288 (1325)
.+-..........+-||+|++||+++.- .+|++||. .|.-. +-|.|.+| ...|.+++|||+|+..+
T Consensus 222 ~~idtnq~~n~~aavSP~GRFia~~gFT------pDVkVwE~~f~kdG~fqev~rvf~LkGH-~saV~~~aFsn~S~r~v 294 (420)
T KOG2096|consen 222 QSIDTNQSSNYDAAVSPDGRFIAVSGFT------PDVKVWEPIFTKDGTFQEVKRVFSLKGH-QSAVLAAAFSNSSTRAV 294 (420)
T ss_pred eeeccccccccceeeCCCCcEEEEecCC------CCceEEEEEeccCcchhhhhhhheeccc-hhheeeeeeCCCcceeE
Confidence 8755444444678999999999999984 57999984 44221 12455554 56799999999999999
Q ss_pred EEEccCCCCeEEEEEeeCCeeEEEeEEEEecCCcEEEEEccCCCcEEEEEecCCcEEEEEEEEeeeeCCCeeEEEEeCCE
Q 000731 289 AVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSK 368 (1325)
Q Consensus 289 s~~~d~~~~~VqLW~~~n~~wylkqel~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDG~~ 368 (1325)
+.+.|+ +++|||++- +++. .+.|+.|..+.
T Consensus 295 tvSkDG---~wriwdtdV---------rY~~---------~qDpk~Lk~g~----------------------------- 324 (420)
T KOG2096|consen 295 TVSKDG---KWRIWDTDV---------RYEA---------GQDPKILKEGS----------------------------- 324 (420)
T ss_pred EEecCC---cEEEeeccc---------eEec---------CCCchHhhcCC-----------------------------
Confidence 999999 999999862 1111 02233232211
Q ss_pred EEEeecCCcCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccccccCCceeEeeeccccccC
Q 000731 369 ILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFG 448 (1325)
Q Consensus 369 l~lt~l~~~~vPpPm~~~~l~~~~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 448 (1325)
.|.+. ..+....++.||+| +.||+. ...+++++...+.....+++ +.+..
T Consensus 325 ------------~pl~a----ag~~p~RL~lsP~g--~~lA~s-~gs~l~~~~se~g~~~~~~e-----------~~h~~ 374 (420)
T KOG2096|consen 325 ------------APLHA----AGSEPVRLELSPSG--DSLAVS-FGSDLKVFASEDGKDYPELE-----------DIHST 374 (420)
T ss_pred ------------cchhh----cCCCceEEEeCCCC--cEEEee-cCCceEEEEcccCccchhHH-----------HhhcC
Confidence 12221 11122267889999 788766 45589999887643332222 23456
Q ss_pred cEEEEEEecCCeEEEEEec
Q 000731 449 SVIHLIWLGSHLLLSVSHH 467 (1325)
Q Consensus 449 ~v~~l~~~~d~~lla~~~~ 467 (1325)
.+.+|+|+++|+++|+.++
T Consensus 375 ~Is~is~~~~g~~~atcGd 393 (420)
T KOG2096|consen 375 TISSISYSSDGKYIATCGD 393 (420)
T ss_pred ceeeEEecCCCcEEeeecc
Confidence 8999999999999998765
No 61
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.81 E-value=2.3e-17 Score=182.77 Aligned_cols=323 Identities=14% Similarity=0.137 Sum_probs=229.1
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEE
Q 000731 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1325)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~V~~v~~spdg~~La~as~dG~I~l 101 (1325)
.+-+.+.+|....+.++++|..-+.|++ .+++. -.. +.+| .+.|+++.||-||..||+|.-+|.|++
T Consensus 66 svFavsl~P~~~l~aTGGgDD~AflW~~--~~ge~--~~e-----ltgH----KDSVt~~~FshdgtlLATGdmsG~v~v 132 (399)
T KOG0296|consen 66 SVFAVSLHPNNNLVATGGGDDLAFLWDI--STGEF--AGE-----LTGH----KDSVTCCSFSHDGTLLATGDMSGKVLV 132 (399)
T ss_pred ceEEEEeCCCCceEEecCCCceEEEEEc--cCCcc--eeE-----ecCC----CCceEEEEEccCceEEEecCCCccEEE
Confidence 5667788897777778888888999999 56663 121 5566 579999999999999999999999999
Q ss_pred EeCCCCeE--EEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeeeccccCCCceeccCccccCCCCeEEE
Q 000731 102 HSVDGNAT--EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPI 179 (1325)
Q Consensus 102 w~~~~~~~--e~vg~~~~~I~~~awSPDG~~LA~~s~dgtV~l~s~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~i 179 (1325)
|...++.. .+.+. -+.|.-+.|.|-+.+|+.|+.||.|-+|...-.. .. ..|.+|...+.+=
T Consensus 133 ~~~stg~~~~~~~~e-~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~-~~--------------kv~~Gh~~~ct~G 196 (399)
T KOG0296|consen 133 FKVSTGGEQWKLDQE-VEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQA-LC--------------KVMSGHNSPCTCG 196 (399)
T ss_pred EEcccCceEEEeecc-cCceEEEEecccccEEEeecCCCcEEEEECCCcc-ee--------------eEecCCCCCcccc
Confidence 99998754 34444 3568889999999999999999999988542110 11 1133566677788
Q ss_pred EEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeecCCCCc-eeEEEEccCCCeEEEEecCCC----CCCCCeEEE
Q 000731 180 SWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFM-GAVLEWMPSGANIAAVYDRKS----ENKCPSIVF 254 (1325)
Q Consensus 180 sWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~~~-v~~lawsPdG~~IAs~~~d~~----~~~~~~V~~ 254 (1325)
.|.|||+.++ +++. +++|++||..+|+.+.......+. -++++++-.|.++.+|+.+.. ....+.|++
T Consensus 197 ~f~pdGKr~~-tgy~------dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~ 269 (399)
T KOG0296|consen 197 EFIPDGKRIL-TGYD------DGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVN 269 (399)
T ss_pred cccCCCceEE-EEec------CceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEE
Confidence 8999999999 6542 589999999999887765433332 378889999998888877532 111234444
Q ss_pred EeCC-CceEEEEEec-cCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeEEEeEEEEecCCcEEEEEccCCC
Q 000731 255 YERN-GLERSSFDIN-EQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKP 332 (1325)
Q Consensus 255 ~e~n-Gl~~~~f~l~-~~~~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~n~~wylkqel~~~~~~~~~v~Wsp~~~ 332 (1325)
...+ +-.. ... .+....|.++.||.+=.+.|+|+-|+ +|-|||... |.+.+... ++...+.+.|.+ ++
T Consensus 270 ~~n~~~~~l---~~~~e~~~esve~~~~ss~lpL~A~G~vdG---~i~iyD~a~--~~~R~~c~-he~~V~~l~w~~-t~ 339 (399)
T KOG0296|consen 270 CNNGTVPEL---KPSQEELDESVESIPSSSKLPLAACGSVDG---TIAIYDLAA--STLRHICE-HEDGVTKLKWLN-TD 339 (399)
T ss_pred ecCCCCccc---cccchhhhhhhhhcccccccchhhcccccc---eEEEEeccc--chhheecc-CCCceEEEEEcC-cc
Confidence 4332 1100 000 11235688888998889999999999 999999865 33333221 222338899998 44
Q ss_pred cEEEEEecCCcEEEEEEEEeeeeCCCeeEEEEeCCEEEEeecCCcCCCCCceeeee-cCCCCEEEEEEecCCCCCEEEEE
Q 000731 333 LQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSL-KFPTAVTEMAFYSKSSKNCLAAI 411 (1325)
Q Consensus 333 ~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDG~~l~lt~l~~~~vPpPm~~~~l-~~~~~V~~VaFSpdg~~~~LAs~ 411 (1325)
. |...+.+|.+. .|+ -|.. .+.+++ .|...|.+.+.+|+. +.+.++
T Consensus 340 ~-l~t~c~~g~v~----~wD---------------------aRtG-----~l~~~y~GH~~~Il~f~ls~~~--~~vvT~ 386 (399)
T KOG0296|consen 340 Y-LLTACANGKVR----QWD---------------------ARTG-----QLKFTYTGHQMGILDFALSPQK--RLVVTV 386 (399)
T ss_pred h-heeeccCceEE----eee---------------------cccc-----ceEEEEecCchheeEEEEcCCC--cEEEEe
Confidence 4 55556566553 232 2221 122333 588899999999999 899999
Q ss_pred ECCCcEEEEeCC
Q 000731 412 LSDGCLCVVDLP 423 (1325)
Q Consensus 412 s~Dgti~lw~~~ 423 (1325)
+.|++.++|+++
T Consensus 387 s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 387 SDDNTALVFEVP 398 (399)
T ss_pred cCCCeEEEEecC
Confidence 999999999875
No 62
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.81 E-value=1.4e-17 Score=196.37 Aligned_cols=368 Identities=14% Similarity=0.093 Sum_probs=243.2
Q ss_pred cceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEE
Q 000731 21 EILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLL 100 (1325)
Q Consensus 21 ~~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~V~~v~~spdg~~La~as~dG~I~ 100 (1325)
+.+....|-+++-.|.++|.|+.++.|-+ ..+.+.|... +--+-.+. ..+.-.+..|+|++..++.-+..|-.+
T Consensus 268 DWV~sv~W~p~~~~LLSASaDksmiiW~p--d~~tGiWv~~-vRlGe~gg---~a~GF~g~lw~~n~~~ii~~g~~Gg~h 341 (764)
T KOG1063|consen 268 DWVYSVWWHPEGLDLLSASADKSMIIWKP--DENTGIWVDV-VRLGEVGG---SAGGFWGGLWSPNSNVIIAHGRTGGFH 341 (764)
T ss_pred cceEEEEEccchhhheecccCcceEEEec--CCccceEEEE-EEeecccc---cccceeeEEEcCCCCEEEEecccCcEE
Confidence 37888899999999999999999999999 5655555432 11110110 023468899999999998889999999
Q ss_pred EEeCCC-Ce--EE-EeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeec-----CceeeeeeccccC---------CCc
Q 000731 101 LHSVDG-NA--TE-VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHD-----WDLLYENPLEELA---------EGF 162 (1325)
Q Consensus 101 lw~~~~-~~--~e-~vg~~~~~I~~~awSPDG~~LA~~s~dgtV~l~s~~-----~d~~~e~~l~~~~---------~~~ 162 (1325)
+|.... .. .+ ..+.|-++|..++|+|.|+.|.++|.|.|-++..+- |--+..=.+|..+ ..+
T Consensus 342 lWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~ 421 (764)
T KOG1063|consen 342 LWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQ 421 (764)
T ss_pred EEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCce
Confidence 998322 22 12 334467899999999999999999999999886542 2111111111111 112
Q ss_pred eec---cC---------------------ccc------------------------------------------------
Q 000731 163 DVH---EP---------------------ELS------------------------------------------------ 170 (1325)
Q Consensus 163 ~Vs---~t---------------------qf~------------------------------------------------ 170 (1325)
+|+ |. +|.
T Consensus 422 FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ 501 (764)
T KOG1063|consen 422 FVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELT 501 (764)
T ss_pred eeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhcc
Confidence 222 00 000
Q ss_pred ---------------------cCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeecCCCCceeEEE
Q 000731 171 ---------------------SSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLE 229 (1325)
Q Consensus 171 ---------------------~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~~~v~~la 229 (1325)
||.-.+.+++-+|+|+++| ++.-.. ......|++|++.+-...+..+.|+-.|+.|+
T Consensus 502 ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliA-SaCKS~-~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~ 579 (764)
T KOG1063|consen 502 EPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIA-SACKSS-LKEHAVIRLWNTANWLQVQELEGHSLTVTRLA 579 (764)
T ss_pred CCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEe-ehhhhC-CccceEEEEEeccchhhhheecccceEEEEEE
Confidence 6888899999999999999 442111 12346799999966666667889999999999
Q ss_pred EccCCCeEEEEecCCCCCCCCeEEEEeCCCceEEEEEec--cCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCC
Q 000731 230 WMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDIN--EQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNN 307 (1325)
Q Consensus 230 wsPdG~~IAs~~~d~~~~~~~~V~~~e~nGl~~~~f~l~--~~~~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~n~ 307 (1325)
|||||++|+++++| .++.+|++......+|... ..|..-|++..|+||+..+|+++.|. +|++|...+.
T Consensus 580 FSpdg~~LLsvsRD------Rt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK---~VkVW~~~~~ 650 (764)
T KOG1063|consen 580 FSPDGRYLLSVSRD------RTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDK---KVKVWEEPDL 650 (764)
T ss_pred ECCCCcEEEEeecC------ceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCc---eEEEEeccCc
Confidence 99999999999997 4699998633223333321 33456699999999999999999999 9999998865
Q ss_pred e-eEEEe--EEEEecCCcEEEEEcc----CCCcEEEEEecCCcEEEEEEEEeeeeCCCeeEEEEeCCEEEEeecCCcCCC
Q 000731 308 H-WYLKY--EIRYLRRDGIRFMWHP----TKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMP 380 (1325)
Q Consensus 308 ~-wylkq--el~~~~~~~~~v~Wsp----~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDG~~l~lt~l~~~~vP 380 (1325)
. -|..+ .+.+. ...+.+.|.| +....+.++...|.+..+.+ ... +....+ |...+ +.+. +
T Consensus 651 ~d~~i~~~a~~~~~-~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~--~~~-~~~~~~----~~~~~--~~~l---~ 717 (764)
T KOG1063|consen 651 RDKYISRFACLKFS-LAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRR--KRE-HRQVTV----GTFNL--DTRL---C 717 (764)
T ss_pred hhhhhhhhchhccC-CceeeEEeeccccccccceEEEEecccEEEEEec--ccc-cccccc----eeeee--cccc---c
Confidence 1 12222 12221 1226666665 33446788888888764432 111 000000 00000 1111 2
Q ss_pred CCceeeeecCCCCEEEEEEecCC--------CCCEEEEEECCCcEEEEeCC
Q 000731 381 PPMYLFSLKFPTAVTEMAFYSKS--------SKNCLAAILSDGCLCVVDLP 423 (1325)
Q Consensus 381 pPm~~~~l~~~~~V~~VaFSpdg--------~~~~LAs~s~Dgti~lw~~~ 423 (1325)
+ ++.+.+.|+.+.|+|.- +.-.||+++.|.++++++++
T Consensus 718 ~-----~~~~~~aV~rl~w~p~~~~~~~~~~~~l~la~~g~D~~vri~nv~ 763 (764)
T KOG1063|consen 718 A-----TIGPDSAVNRLLWRPTCSDDWVEDKEWLNLAVGGDDESVRIFNVD 763 (764)
T ss_pred c-----ccChHHhhheeEeccccccccccccceeEEeeecccceeEEeecc
Confidence 2 23356789999999862 11357999999999999874
No 63
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.80 E-value=7.8e-17 Score=184.20 Aligned_cols=270 Identities=12% Similarity=0.088 Sum_probs=169.6
Q ss_pred CEEEEEECCCcEEEEeCCCCeEE-EeceecCcEEEEEEcCCCCeE-EEEeCCccEEEEeec-CceeeeeeccccCCCcee
Q 000731 88 EALIVGTSSGLLLLHSVDGNATE-VVGRVEGGVRFISPSPDGDLL-GVTTGFGQILVMTHD-WDLLYENPLEELAEGFDV 164 (1325)
Q Consensus 88 ~~La~as~dG~I~lw~~~~~~~e-~vg~~~~~I~~~awSPDG~~L-A~~s~dgtV~l~s~~-~d~~~e~~l~~~~~~~~V 164 (1325)
..+++++.||+|.+||..++++. .... ...+.+++|+|||+.| ++++.+++|.+|+.. ...+.....+
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~-~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-------- 72 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFPV-GQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSG-------- 72 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEEC-CCCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCC--------
Confidence 46788999999999999876543 3332 3457889999999987 556778999988632 2222211111
Q ss_pred ccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeecCCCCceeEEEEccCCCeEEEEecCC
Q 000731 165 HEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRK 244 (1325)
Q Consensus 165 s~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~~~v~~lawsPdG~~IAs~~~d~ 244 (1325)
.....++|+|||++++ ++. ..++.+++||..+++.....+. .....+++|+|+|++++++..+.
T Consensus 73 ---------~~~~~~~~~~~g~~l~-~~~-----~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~ 136 (300)
T TIGR03866 73 ---------PDPELFALHPNGKILY-IAN-----EDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDGKIVVNTSETT 136 (300)
T ss_pred ---------CCccEEEECCCCCEEE-EEc-----CCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCCCEEEEEecCC
Confidence 1235789999999876 442 2357999999977777666542 22357899999999999887642
Q ss_pred CCCCCCeEEEEeCCCceEEEEEeccCCCCcEEEEEEccCCCeeEEEE-ccCCCCeEEEEEeeCCeeEEEeEEEEecC---
Q 000731 245 SENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVV-RFEEYDSVKICFFSNNHWYLKYEIRYLRR--- 320 (1325)
Q Consensus 245 ~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~-~d~~~~~VqLW~~~n~~wylkqel~~~~~--- 320 (1325)
..+.+|+.+....-. .+. ....+..++|+|||+.|++++ .++ .|++|+..+.... ..+.+...
T Consensus 137 -----~~~~~~d~~~~~~~~-~~~--~~~~~~~~~~s~dg~~l~~~~~~~~---~v~i~d~~~~~~~--~~~~~~~~~~~ 203 (300)
T TIGR03866 137 -----NMAHFIDTKTYEIVD-NVL--VDQRPRFAEFTADGKELWVSSEIGG---TVSVIDVATRKVI--KKITFEIPGVH 203 (300)
T ss_pred -----CeEEEEeCCCCeEEE-EEE--cCCCccEEEECCCCCEEEEEcCCCC---EEEEEEcCcceee--eeeeecccccc
Confidence 356677865322211 111 123456899999999886654 355 8999999875421 22322110
Q ss_pred --C--cEEEEEccCCCcEEEEEe-cCCcEEEEEEEEeeeeCCCeeEEEEeCCEEEEeecCCcCCCCCceeeeecCCCCEE
Q 000731 321 --D--GIRFMWHPTKPLQLICWT-LDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVT 395 (1325)
Q Consensus 321 --~--~~~v~Wsp~~~~~L~~~~-~~g~~~~~~~~~~~~~~d~~~v~viDG~~l~lt~l~~~~vPpPm~~~~l~~~~~V~ 395 (1325)
. ...+.|+|++.. +.+.. .++ .+.+|+.....+ ...+.+...+.
T Consensus 204 ~~~~~~~~i~~s~dg~~-~~~~~~~~~-------------------------~i~v~d~~~~~~-----~~~~~~~~~~~ 252 (300)
T TIGR03866 204 PEAVQPVGIKLTKDGKT-AFVALGPAN-------------------------RVAVVDAKTYEV-----LDYLLVGQRVW 252 (300)
T ss_pred cccCCccceEECCCCCE-EEEEcCCCC-------------------------eEEEEECCCCcE-----EEEEEeCCCcc
Confidence 1 134667777654 22211 111 122222211100 01122345688
Q ss_pred EEEEecCCCCCEEEEEE-CCCcEEEEeCCCCCcc
Q 000731 396 EMAFYSKSSKNCLAAIL-SDGCLCVVDLPAPDML 428 (1325)
Q Consensus 396 ~VaFSpdg~~~~LAs~s-~Dgti~lw~~~~~~~~ 428 (1325)
+++|+|+| +.|+++. .+|+|.+|+..+..+.
T Consensus 253 ~~~~~~~g--~~l~~~~~~~~~i~v~d~~~~~~~ 284 (300)
T TIGR03866 253 QLAFTPDE--KYLLTTNGVSNDVSVIDVAALKVI 284 (300)
T ss_pred eEEECCCC--CEEEEEcCCCCeEEEEECCCCcEE
Confidence 99999999 7888764 5899999999875443
No 64
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.80 E-value=1.2e-17 Score=181.06 Aligned_cols=285 Identities=13% Similarity=0.139 Sum_probs=201.3
Q ss_pred EEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeeeccccCCCceeccCccccCCCCeEEEEEecCCcEEE
Q 000731 110 EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFA 189 (1325)
Q Consensus 110 e~vg~~~~~I~~~awSPDG~~LA~~s~dgtV~l~s~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lA 189 (1325)
+...+|.+.|..+.|+|||..||+++.|..|.+|+-..|.-.-.. .++|.+.|..+.|.+||..+.
T Consensus 41 m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~--------------lkgHsgAVM~l~~~~d~s~i~ 106 (338)
T KOG0265|consen 41 MLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWV--------------LKGHSGAVMELHGMRDGSHIL 106 (338)
T ss_pred hhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceee--------------eccccceeEeeeeccCCCEEE
Confidence 344457999999999999999999999999999975544321111 126778899999999999998
Q ss_pred EeeccccccCCCCEEEEEECCCCceeeeecCCCCceeEEEEccCCC-eEEEEecCCCCCCCCeEEEEeCCCceEEEEEec
Q 000731 190 TLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGA-NIAAVYDRKSENKCPSIVFYERNGLERSSFDIN 268 (1325)
Q Consensus 190 tvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~~~v~~lawsPdG~-~IAs~~~d~~~~~~~~V~~~e~nGl~~~~f~l~ 268 (1325)
++| .|++|++||.++|+.......|...++++.=+--|. +|.|+++| .++++||.-- .+ .+.
T Consensus 107 S~g-------tDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD------~t~kl~D~R~---k~-~~~ 169 (338)
T KOG0265|consen 107 SCG-------TDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDD------GTLKLWDIRK---KE-AIK 169 (338)
T ss_pred Eec-------CCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCC------ceEEEEeecc---cc-hhh
Confidence 443 369999999999999999999999999988333344 56777775 5799999421 11 111
Q ss_pred c-CCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeEEEeEEEEecCCcEEEEEccCCCcEEEEEecCCcEEEE
Q 000731 269 E-QIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTY 347 (1325)
Q Consensus 269 ~-~~~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~n~~wylkqel~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~ 347 (1325)
. +....+.++.|+-+|+...+|+-|. .||+||..+.+- .+.+..|.+..+.+.-+|++.. +..-..+..+
T Consensus 170 t~~~kyqltAv~f~d~s~qv~sggIdn---~ikvWd~r~~d~--~~~lsGh~DtIt~lsls~~gs~-llsnsMd~tv--- 240 (338)
T KOG0265|consen 170 TFENKYQLTAVGFKDTSDQVISGGIDN---DIKVWDLRKNDG--LYTLSGHADTITGLSLSRYGSF-LLSNSMDNTV--- 240 (338)
T ss_pred ccccceeEEEEEecccccceeeccccC---ceeeeccccCcc--eEEeecccCceeeEEeccCCCc-cccccccceE---
Confidence 1 1235689999999999999999998 899999965542 3466666555588888888865 2222223333
Q ss_pred EEEEeeeeC--CCeeEEEEeCCEEEEeecCCcCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCC
Q 000731 348 NFIWTTAVM--ENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAP 425 (1325)
Q Consensus 348 ~~~~~~~~~--d~~~v~viDG~~l~lt~l~~~~vPpPm~~~~l~~~~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~~~~~ 425 (1325)
-+|++.|- ....+.+-.|.. ..+.-+....+|||++ +.+.++++|..+++|+....
T Consensus 241 -rvwd~rp~~p~~R~v~if~g~~-------------------hnfeknlL~cswsp~~--~~i~ags~dr~vyvwd~~~r 298 (338)
T KOG0265|consen 241 -RVWDVRPFAPSQRCVKIFQGHI-------------------HNFEKNLLKCSWSPNG--TKITAGSADRFVYVWDTTSR 298 (338)
T ss_pred -EEEEecccCCCCceEEEeecch-------------------hhhhhhcceeeccCCC--CccccccccceEEEeecccc
Confidence 24444411 112223222221 1123445688999999 89999999999999998764
Q ss_pred CccccccCCceeEeeeccccccCcEEEEEEecCCeEEEEEecC
Q 000731 426 DMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHG 468 (1325)
Q Consensus 426 ~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~ 468 (1325)
..+--++| +.+.|.++.|.|...+|.+++.+
T Consensus 299 ~~lyklpG------------h~gsvn~~~Fhp~e~iils~~sd 329 (338)
T KOG0265|consen 299 RILYKLPG------------HYGSVNEVDFHPTEPIILSCSSD 329 (338)
T ss_pred cEEEEcCC------------cceeEEEeeecCCCcEEEEeccC
Confidence 33322333 46789999999999998887665
No 65
>PTZ00421 coronin; Provisional
Probab=99.80 E-value=1.3e-17 Score=204.10 Aligned_cols=243 Identities=14% Similarity=0.109 Sum_probs=157.5
Q ss_pred EEEEEEccCCCEEEEEECCCcEEEEeCCCC----------eE----EEeceecCcEEEEEEcC-CCCeEEEEeCCccEEE
Q 000731 78 ITAFDYLMEKEALIVGTSSGLLLLHSVDGN----------AT----EVVGRVEGGVRFISPSP-DGDLLGVTTGFGQILV 142 (1325)
Q Consensus 78 V~~v~~spdg~~La~as~dG~I~lw~~~~~----------~~----e~vg~~~~~I~~~awSP-DG~~LA~~s~dgtV~l 142 (1325)
|....+++|+..++.++.+.....|+..++ +. ..+..|.+.|++++||| |+++||+++.|++|++
T Consensus 23 i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkI 102 (493)
T PTZ00421 23 VTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMG 102 (493)
T ss_pred cccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEE
Confidence 344445566555555555554455554332 21 12334688999999999 9999999999999999
Q ss_pred EeecCceeeeeeccccCCCceeccCccccCCCCeEEEEEecCC-cEEEEeeccccccCCCCEEEEEECCCCceeeeecCC
Q 000731 143 MTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDG-KYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELK 221 (1325)
Q Consensus 143 ~s~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG-~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~ 221 (1325)
|+..-....... ...+ ..+.+|...|..++|+|++ .+|| +++ .|++|+|||.++|+...+...|
T Consensus 103 Wdi~~~~~~~~~------~~~l--~~L~gH~~~V~~l~f~P~~~~iLa-Sgs------~DgtVrIWDl~tg~~~~~l~~h 167 (493)
T PTZ00421 103 WGIPEEGLTQNI------SDPI--VHLQGHTKKVGIVSFHPSAMNVLA-SAG------ADMVVNVWDVERGKAVEVIKCH 167 (493)
T ss_pred EecCCCcccccc------Ccce--EEecCCCCcEEEEEeCcCCCCEEE-EEe------CCCEEEEEECCCCeEEEEEcCC
Confidence 864211110000 0001 1244777889999999986 5888 554 3689999999899998888889
Q ss_pred CCceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeC-CCceEEEEEeccCCCCcEEEEEEccCCCeeEEEEccC-CCCeE
Q 000731 222 AFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYER-NGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFE-EYDSV 299 (1325)
Q Consensus 222 ~~~v~~lawsPdG~~IAs~~~d~~~~~~~~V~~~e~-nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~-~~~~V 299 (1325)
...+.+++|+|+|++||+++.| +.|++||. +|..... +..+....+..+.|+|++..|++++.++ ...+|
T Consensus 168 ~~~V~sla~spdG~lLatgs~D------g~IrIwD~rsg~~v~t--l~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~V 239 (493)
T PTZ00421 168 SDQITSLEWNLDGSLLCTTSKD------KKLNIIDPRDGTIVSS--VEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQI 239 (493)
T ss_pred CCceEEEEEECCCCEEEEecCC------CEEEEEECCCCcEEEE--EecCCCCcceEEEEcCCCCeEEEEecCCCCCCeE
Confidence 9999999999999999999986 57999994 4543332 3333333456788999988877665321 12289
Q ss_pred EEEEeeCCeeEEEeEEEEecCCc-EEEEEccCCCcEEEEEe-cCCcEE
Q 000731 300 KICFFSNNHWYLKYEIRYLRRDG-IRFMWHPTKPLQLICWT-LDGQIT 345 (1325)
Q Consensus 300 qLW~~~n~~wylkqel~~~~~~~-~~v~Wsp~~~~~L~~~~-~~g~~~ 345 (1325)
+|||..+...-+ +....+.... ....|+|++.. |.++. .+|.+.
T Consensus 240 klWDlr~~~~p~-~~~~~d~~~~~~~~~~d~d~~~-L~lggkgDg~Ir 285 (493)
T PTZ00421 240 MLWDTRKMASPY-STVDLDQSSALFIPFFDEDTNL-LYIGSKGEGNIR 285 (493)
T ss_pred EEEeCCCCCCce-eEeccCCCCceEEEEEcCCCCE-EEEEEeCCCeEE
Confidence 999997643211 1111222222 44567877664 44433 355443
No 66
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.80 E-value=3.2e-18 Score=195.59 Aligned_cols=286 Identities=13% Similarity=0.138 Sum_probs=198.6
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCC--CCCEEEEEEccCCCEEEEEECCCcE
Q 000731 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEP--GDSITAFDYLMEKEALIVGTSSGLL 99 (1325)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~--~~~V~~v~~spdg~~La~as~dG~I 99 (1325)
.+.++++|+-+-+++++|-|..+..||.. +- . .++++ ++. ++| +..|.+++|||.|.+|.+++..-..
T Consensus 169 ~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~---gM---d-as~~~-fr~--l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqa 238 (641)
T KOG0772|consen 169 IVSALAVDPSGARFVSGSLDYTVKFWDFQ---GM---D-ASMRS-FRQ--LQPCETHQINSLQYSVTGDQILVVSGSAQA 238 (641)
T ss_pred EEEEeeecCCCceeeeccccceEEEEecc---cc---c-ccchh-hhc--cCcccccccceeeecCCCCeEEEEecCcce
Confidence 68899999999999999999999999983 11 0 01111 221 334 5689999999999999999999999
Q ss_pred EEEeCCCCeE-EE-------------eceecCcEEEEEEcCCC-CeEEEEeCCccEEEEeecCceeeee-eccccC-CCc
Q 000731 100 LLHSVDGNAT-EV-------------VGRVEGGVRFISPSPDG-DLLGVTTGFGQILVMTHDWDLLYEN-PLEELA-EGF 162 (1325)
Q Consensus 100 ~lw~~~~~~~-e~-------------vg~~~~~I~~~awSPDG-~~LA~~s~dgtV~l~s~~~d~~~e~-~l~~~~-~~~ 162 (1325)
+|+|.++.++ |+ .| |-..++|.+|.|+. +.+.+++.||++++|+-+ +..... -+.+-. .++
T Consensus 239 kl~DRdG~~~~e~~KGDQYI~Dm~nTKG-Hia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~-~~k~q~qVik~k~~~g~ 316 (641)
T KOG0772|consen 239 KLLDRDGFEIVEFSKGDQYIRDMYNTKG-HIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVN-NTKSQLQVIKTKPAGGK 316 (641)
T ss_pred eEEccCCceeeeeeccchhhhhhhccCC-ceeeeeccccccCcccceEEecCCCcEEEEecC-CchhheeEEeeccCCCc
Confidence 9999998543 22 34 56789999999995 467788999999998632 111111 111111 122
Q ss_pred eeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCce----eeeecCCCC--ceeEEEEccCCCe
Q 000731 163 DVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTL----QASSELKAF--MGAVLEWMPSGAN 236 (1325)
Q Consensus 163 ~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l----~~t~e~~~~--~v~~lawsPdG~~ 236 (1325)
- -.+.+.+|+|||+.|| .+ ..|+.|++|+. .+.. ...-..|.+ .+++|+||+||++
T Consensus 317 R----------v~~tsC~~nrdg~~iA-ag------c~DGSIQ~W~~-~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~ 378 (641)
T KOG0772|consen 317 R----------VPVTSCAWNRDGKLIA-AG------CLDGSIQIWDK-GSRTVRPVMKVKDAHLPGQDITSISFSYDGNY 378 (641)
T ss_pred c----------cCceeeecCCCcchhh-hc------ccCCceeeeec-CCcccccceEeeeccCCCCceeEEEeccccch
Confidence 2 2468899999999999 55 34689999996 2222 223345666 6899999999999
Q ss_pred EEEEecCCCCCCCCeEEEEeCCCceEEEEEec-cCCCCcEEEEEEccCCCeeEEEEccCC---CCeEEEEEeeCCeeEEE
Q 000731 237 IAAVYDRKSENKCPSIVFYERNGLERSSFDIN-EQIDSTVELLKWNCMSDLLAAVVRFEE---YDSVKICFFSNNHWYLK 312 (1325)
Q Consensus 237 IAs~~~d~~~~~~~~V~~~e~nGl~~~~f~l~-~~~~~~V~~laWSpDg~~LAs~~~d~~---~~~VqLW~~~n~~wylk 312 (1325)
|+|=+.| .++++|+...-..--+... .+....-...+||||-++|.+|++-.. ..++.+++...+. ..
T Consensus 379 LlSRg~D------~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d--~v 450 (641)
T KOG0772|consen 379 LLSRGFD------DTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLD--TV 450 (641)
T ss_pred hhhccCC------CceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEecccee--eE
Confidence 9998886 5699999421110000000 111223457999999999999876432 2378888887764 56
Q ss_pred eEEEEecCCcEEEEEccCCCcEEEEEecCCcEEE
Q 000731 313 YEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITT 346 (1325)
Q Consensus 313 qel~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~ 346 (1325)
+.|.++..+...+.|||.-. ++.+++.+|...+
T Consensus 451 ~ki~i~~aSvv~~~WhpkLN-Qi~~gsgdG~~~v 483 (641)
T KOG0772|consen 451 YKIDISTASVVRCLWHPKLN-QIFAGSGDGTAHV 483 (641)
T ss_pred EEecCCCceEEEEeecchhh-heeeecCCCceEE
Confidence 77777644447899999654 4888888888764
No 67
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.80 E-value=1.3e-17 Score=177.75 Aligned_cols=266 Identities=16% Similarity=0.193 Sum_probs=190.2
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccC-CCEEEEEECCCcEE
Q 000731 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLME-KEALIVGTSSGLLL 100 (1325)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~V~~v~~spd-g~~La~as~dG~I~ 100 (1325)
.+...+|..++..|.++|-|+....|++ .-...... ...++| ++.|..+.|.|. ...+++++.|.+|+
T Consensus 22 ~v~Sv~wn~~g~~lasgs~dktv~v~n~--e~~r~~~~-----~~~~gh----~~svdql~w~~~~~d~~atas~dk~ir 90 (313)
T KOG1407|consen 22 KVHSVAWNCDGTKLASGSFDKTVSVWNL--ERDRFRKE-----LVYRGH----TDSVDQLCWDPKHPDLFATASGDKTIR 90 (313)
T ss_pred cceEEEEcccCceeeecccCCceEEEEe--cchhhhhh-----hcccCC----CcchhhheeCCCCCcceEEecCCceEE
Confidence 6888999999999999999998988988 33221000 012333 467888899875 46899999999999
Q ss_pred EEeCCCCeEE-EeceecCcEEEEEEcCCCCeEEEEeCCccEEEEe-ecCceeeeeeccccCCCceeccCccccCCCCeEE
Q 000731 101 LHSVDGNATE-VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMT-HDWDLLYENPLEELAEGFDVHEPELSSSFSFKSP 178 (1325)
Q Consensus 101 lw~~~~~~~e-~vg~~~~~I~~~awSPDG~~LA~~s~dgtV~l~s-~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~ 178 (1325)
+||...+++- .+.. .++=.-+.|||||+++|.++.|..|...+ +...+..+.... -.+..
T Consensus 91 ~wd~r~~k~~~~i~~-~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~-----------------~e~ne 152 (313)
T KOG1407|consen 91 IWDIRSGKCTARIET-KGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFK-----------------FEVNE 152 (313)
T ss_pred EEEeccCcEEEEeec-cCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhccc-----------------ceeee
Confidence 9998776543 2222 34455678999999999999998876643 333333322211 23478
Q ss_pred EEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeecCCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeCC
Q 000731 179 ISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERN 258 (1325)
Q Consensus 179 isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~~~v~~lawsPdG~~IAs~~~d~~~~~~~~V~~~e~n 258 (1325)
++|+-++.+|. .. .|.|+|.|-.--+-+.+.+...|+.---+|.|+|+|+++|+|+.|. .|.+||.+
T Consensus 153 ~~w~~~nd~Ff-lt------~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADA------lvSLWD~~ 219 (313)
T KOG1407|consen 153 ISWNNSNDLFF-LT------NGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADA------LVSLWDVD 219 (313)
T ss_pred eeecCCCCEEE-Ee------cCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccc------eeeccChh
Confidence 99998888765 32 3458999988657777777888888788999999999999999974 58999987
Q ss_pred CceEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeEEEeEEEEecCCc-EEEEEccCCCcEEEE
Q 000731 259 GLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDG-IRFMWHPTKPLQLIC 337 (1325)
Q Consensus 259 Gl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~n~~wylkqel~~~~~~~-~~v~Wsp~~~~~L~~ 337 (1325)
-+.=- -.+. ..+-.|..|+||.||++||++++|. .|-|=++.++.- -.++.. ..+ ..|+|||..++ |+.
T Consensus 220 ELiC~-R~is-RldwpVRTlSFS~dg~~lASaSEDh---~IDIA~vetGd~--~~eI~~--~~~t~tVAWHPk~~L-LAy 289 (313)
T KOG1407|consen 220 ELICE-RCIS-RLDWPVRTLSFSHDGRMLASASEDH---FIDIAEVETGDR--VWEIPC--EGPTFTVAWHPKRPL-LAY 289 (313)
T ss_pred Hhhhh-eeec-cccCceEEEEeccCcceeeccCccc---eEEeEecccCCe--EEEeec--cCCceeEEecCCCce-eeE
Confidence 54310 0111 2356799999999999999999998 777766665431 123332 344 88999998876 444
Q ss_pred Ee
Q 000731 338 WT 339 (1325)
Q Consensus 338 ~~ 339 (1325)
..
T Consensus 290 A~ 291 (313)
T KOG1407|consen 290 AC 291 (313)
T ss_pred Ee
Confidence 43
No 68
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.80 E-value=4.3e-17 Score=180.69 Aligned_cols=327 Identities=15% Similarity=0.134 Sum_probs=220.9
Q ss_pred CCCEEEEEEccCCCEEEEEECCCcEEEEeCCCCeE--EEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeec-Cceee
Q 000731 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNAT--EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHD-WDLLY 151 (1325)
Q Consensus 75 ~~~V~~v~~spdg~~La~as~dG~I~lw~~~~~~~--e~vg~~~~~I~~~awSPDG~~LA~~s~dgtV~l~s~~-~d~~~ 151 (1325)
.+.|-+++.+|+...+|+|+.|..-.||+..++.. ++.| |.+.|.|+.||.||.+||+|.-+|.|.+|.-+ ....
T Consensus 64 ~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltg-HKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~- 141 (399)
T KOG0296|consen 64 TDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTG-HKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQ- 141 (399)
T ss_pred CCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecC-CCCceEEEEEccCceEEEecCCCccEEEEEcccCceE-
Confidence 57899999999999999999999999999988753 5666 58999999999999999999999999998432 1110
Q ss_pred eeeccccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeecCCCCceeEEEEc
Q 000731 152 ENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWM 231 (1325)
Q Consensus 152 e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~~~v~~laws 231 (1325)
..+. +.+ +.+.=+.|.|-+.+|+ .++ .|+.+-+|...++....++.+|...+++-.|.
T Consensus 142 -~~~~-----~e~---------~dieWl~WHp~a~ill-AG~------~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~ 199 (399)
T KOG0296|consen 142 -WKLD-----QEV---------EDIEWLKWHPRAHILL-AGS------TDGSVWMWQIPSQALCKVMSGHNSPCTCGEFI 199 (399)
T ss_pred -EEee-----ccc---------CceEEEEecccccEEE-eec------CCCcEEEEECCCcceeeEecCCCCCccccccc
Confidence 1111 011 3456799999999988 554 46899999997778888899999999999999
Q ss_pred cCCCeEEEEecCCCCCCCCeEEEEeC-CCceEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeE
Q 000731 232 PSGANIAAVYDRKSENKCPSIVFYER-NGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWY 310 (1325)
Q Consensus 232 PdG~~IAs~~~d~~~~~~~~V~~~e~-nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~n~~wy 310 (1325)
|||++|+++..| ++|++|+. .|. ..+.+..........++++.+|..+..+..++ .+.+-.....+
T Consensus 200 pdGKr~~tgy~d------gti~~Wn~ktg~--p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~---~~~~~~~~sgK-- 266 (399)
T KOG0296|consen 200 PDGKRILTGYDD------GTIIVWNPKTGQ--PLHKITQAEGLELPCISLNLAGSTLTKGNSEG---VACGVNNGSGK-- 266 (399)
T ss_pred CCCceEEEEecC------ceEEEEecCCCc--eeEEecccccCcCCccccccccceeEeccCCc---cEEEEccccce--
Confidence 999999999985 57999994 452 23344322223455788889998888888877 44443322211
Q ss_pred EEeEEEEecCCcEEEEEccCCCcEEEEEecCCcEEEEEE-EEeeeeCCCeeEEEEeCCEEEEeecCCcCCCCCceeeeec
Q 000731 311 LKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNF-IWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLK 389 (1325)
Q Consensus 311 lkqel~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~-~~~~~~~d~~~v~viDG~~l~lt~l~~~~vPpPm~~~~l~ 389 (1325)
+.....|..|. |...... ......+ .|+.. -+...+...|| +|.+|++..+-+ .+..+
T Consensus 267 ------------Vv~~~n~~~~~-l~~~~e~-~~esve~~~~ss~-lpL~A~G~vdG-~i~iyD~a~~~~-----R~~c~ 325 (399)
T KOG0296|consen 267 ------------VVNCNNGTVPE-LKPSQEE-LDESVESIPSSSK-LPLAACGSVDG-TIAIYDLAASTL-----RHICE 325 (399)
T ss_pred ------------EEEecCCCCcc-ccccchh-hhhhhhhcccccc-cchhhcccccc-eEEEEecccchh-----heecc
Confidence 11111111111 0000000 0000000 01100 01111222344 456666654321 12457
Q ss_pred CCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccccccCCceeEeeeccccccCcEEEEEEecCCeEEEEEecCC
Q 000731 390 FPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGP 469 (1325)
Q Consensus 390 ~~~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~~ 469 (1325)
|+..|..+-|-++ ..|++++.||+|+.||.-+..+..+..|| ...|..++.+|+.+++.+.+++
T Consensus 326 he~~V~~l~w~~t---~~l~t~c~~g~v~~wDaRtG~l~~~y~GH------------~~~Il~f~ls~~~~~vvT~s~D- 389 (399)
T KOG0296|consen 326 HEDGVTKLKWLNT---DYLLTACANGKVRQWDARTGQLKFTYTGH------------QMGILDFALSPQKRLVVTVSDD- 389 (399)
T ss_pred CCCceEEEEEcCc---chheeeccCceEEeeeccccceEEEEecC------------chheeEEEEcCCCcEEEEecCC-
Confidence 8999999999995 58999999999999999876666455554 4578999999999999998876
Q ss_pred CCceEEE
Q 000731 470 RHSNYFR 476 (1325)
Q Consensus 470 ~~~~~~~ 476 (1325)
+...++
T Consensus 390 -~~a~VF 395 (399)
T KOG0296|consen 390 -NTALVF 395 (399)
T ss_pred -CeEEEE
Confidence 344444
No 69
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=1.3e-17 Score=202.17 Aligned_cols=260 Identities=17% Similarity=0.275 Sum_probs=195.8
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEE
Q 000731 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1325)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~V~~v~~spdg~~La~as~dG~I~l 101 (1325)
-.+.++||++++.|++|+.|+.|..|+-++.. ..|..+. . .+..|.++ .-++..|++++.+++|..
T Consensus 15 G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~--------e~P~ti~---~-~g~~v~~i--a~~s~~f~~~s~~~tv~~ 80 (933)
T KOG1274|consen 15 GLTLICYDPDGEFICTCGSDGDIRKWKTNSDE--------EEPETID---I-SGELVSSI--ACYSNHFLTGSEQNTVLR 80 (933)
T ss_pred ceEEEEEcCCCCEEEEecCCCceEEeecCCcc--------cCCchhh---c-cCceeEEE--eecccceEEeeccceEEE
Confidence 47889999999999999999999999874210 1111111 0 13455555 445669999999999999
Q ss_pred EeCCCCeEE-EeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeeeccccCCCceeccCccccCCCCeEEEE
Q 000731 102 HSVDGNATE-VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPIS 180 (1325)
Q Consensus 102 w~~~~~~~e-~vg~~~~~I~~~awSPDG~~LA~~s~dgtV~l~s~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~is 180 (1325)
|....++-. ++..+.-.++++++|-+|+++|.||.|-.|++.+-+ |.-.+. .+++|+..|.+++
T Consensus 81 y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~-D~s~~~--------------~lrgh~apVl~l~ 145 (933)
T KOG1274|consen 81 YKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLD-DSSQEK--------------VLRGHDAPVLQLS 145 (933)
T ss_pred eeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEecc-ccchhe--------------eecccCCceeeee
Confidence 998876654 666677889999999999999999999999886431 221222 2447888999999
Q ss_pred EecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeecCC--------CCceeEEEEccCCCeEEEEecCCCCCCCCeE
Q 000731 181 WRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELK--------AFMGAVLEWMPSGANIAAVYDRKSENKCPSI 252 (1325)
Q Consensus 181 WspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~--------~~~v~~lawsPdG~~IAs~~~d~~~~~~~~V 252 (1325)
+.|.|.+|| +++. +|+|+|||.++|.+..+..+. .....-++|+|+|..+|....| +.|
T Consensus 146 ~~p~~~fLA-vss~------dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d------~~V 212 (933)
T KOG1274|consen 146 YDPKGNFLA-VSSC------DGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVD------NTV 212 (933)
T ss_pred EcCCCCEEE-EEec------CceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccC------CeE
Confidence 999999999 6643 589999999999887775542 2345789999997777666653 679
Q ss_pred EEEeCCCceEEEEEeccC-CCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeEEEeEEEEecCCcEEEEEccCC
Q 000731 253 VFYERNGLERSSFDINEQ-IDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTK 331 (1325)
Q Consensus 253 ~~~e~nGl~~~~f~l~~~-~~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~n~~wylkqel~~~~~~~~~v~Wsp~~ 331 (1325)
++|.++|+.+. |.|+.. ....+..++|||.|++||+++-++ .|-+|++.. |- . ++. .....+.+|.|+.
T Consensus 213 kvy~r~~we~~-f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g---~I~vWnv~t-~~-~-~~~---~~~Vc~~aw~p~~ 282 (933)
T KOG1274|consen 213 KVYSRKGWELQ-FKLRDKLSSSKFSDLQWSPNGKYIAASTLDG---QILVWNVDT-HE-R-HEF---KRAVCCEAWKPNA 282 (933)
T ss_pred EEEccCCceeh-eeecccccccceEEEEEcCCCcEEeeeccCC---cEEEEeccc-ch-h-ccc---cceeEEEecCCCC
Confidence 99999998764 777733 234599999999999999999998 899999986 31 1 111 0123788999988
Q ss_pred Cc
Q 000731 332 PL 333 (1325)
Q Consensus 332 ~~ 333 (1325)
+.
T Consensus 283 n~ 284 (933)
T KOG1274|consen 283 NA 284 (933)
T ss_pred Ce
Confidence 74
No 70
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.79 E-value=3.9e-19 Score=192.47 Aligned_cols=269 Identities=16% Similarity=0.111 Sum_probs=181.3
Q ss_pred cCcEEEEEEcCCCCeEEEEeCCccEEEEee-cCceeeeeeccccCCCceeccCccccCCCCeEEEEEecCCcEEEEeecc
Q 000731 116 EGGVRFISPSPDGDLLGVTTGFGQILVMTH-DWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEF 194 (1325)
Q Consensus 116 ~~~I~~~awSPDG~~LA~~s~dgtV~l~s~-~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~ 194 (1325)
.+.+.|+.|||||++|++++-||-|.+|+- .+........... .+|--+++.+.+|+||.|...+| +++
T Consensus 213 KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAq--------d~fMMmd~aVlci~FSRDsEMlA-sGs- 282 (508)
T KOG0275|consen 213 KSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQ--------DNFMMMDDAVLCISFSRDSEMLA-SGS- 282 (508)
T ss_pred ccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhh--------cceeecccceEEEeecccHHHhh-ccC-
Confidence 567999999999999999999999999752 1221111111111 23446788999999999999999 664
Q ss_pred ccccCCCCEEEEEECCCCceeeeec-CCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEEEe-CCCceEEEEEeccCCC
Q 000731 195 CNSSKLHKRLKVWERDSGTLQASSE-LKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYE-RNGLERSSFDINEQID 272 (1325)
Q Consensus 195 d~~~~~d~~irVWd~~~G~l~~t~e-~~~~~v~~lawsPdG~~IAs~~~d~~~~~~~~V~~~e-~nGl~~~~f~l~~~~~ 272 (1325)
.|++||||..++|+++..++ .|...+.+++||.|+..|.|++.| ++|++.- +.|....+| ++ +.
T Consensus 283 -----qDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD------~tvRiHGlKSGK~LKEf--rG-Hs 348 (508)
T KOG0275|consen 283 -----QDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFD------QTVRIHGLKSGKCLKEF--RG-HS 348 (508)
T ss_pred -----cCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhccccc------ceEEEeccccchhHHHh--cC-cc
Confidence 46899999999999999987 688889999999999999999996 5688874 334333333 22 35
Q ss_pred CcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeEEEeEEEEecCC-c-EEEEEccCCCcEEEEEecCCcEEEEEEE
Q 000731 273 STVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRD-G-IRFMWHPTKPLQLICWTLDGQITTYNFI 350 (1325)
Q Consensus 273 ~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~n~~wylkqel~~~~~~-~-~~v~Wsp~~~~~L~~~~~~g~~~~~~~~ 350 (1325)
..|+...|++||..+.++++|+ +|++|+.++..+. +++...+.+ . .++.--|.+|..+.+.+.++++.+.+..
T Consensus 349 Syvn~a~ft~dG~~iisaSsDg---tvkvW~~KtteC~--~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q 423 (508)
T KOG0275|consen 349 SYVNEATFTDDGHHIISASSDG---TVKVWHGKTTECL--STFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ 423 (508)
T ss_pred ccccceEEcCCCCeEEEecCCc---cEEEecCcchhhh--hhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc
Confidence 6799999999999999999999 9999998865542 223222222 2 5566667776655555554444332211
Q ss_pred ----Eeee---------------eCCCeeEEEEeCCEEEEee-cCCcCCCCCceeeeec-CCCCEEEEEEecCCCCCEEE
Q 000731 351 ----WTTA---------------VMENSTALVIDGSKILVTP-LSLSLMPPPMYLFSLK-FPTAVTEMAFYSKSSKNCLA 409 (1325)
Q Consensus 351 ----~~~~---------------~~d~~~v~viDG~~l~lt~-l~~~~vPpPm~~~~l~-~~~~V~~VaFSpdg~~~~LA 409 (1325)
-+.. |.+.-+.++..+..+.-.. +.+. . .+++. |..-|..++-+|.. +.||
T Consensus 424 GQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~-L-----E~tl~VhEkdvIGl~HHPHq--NllA 495 (508)
T KOG0275|consen 424 GQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGK-L-----ERTLPVHEKDVIGLTHHPHQ--NLLA 495 (508)
T ss_pred ceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCc-e-----eeeeecccccccccccCccc--chhh
Confidence 1100 1111111121122221111 1111 1 12332 56667889999988 8999
Q ss_pred EEECCCcEEEEe
Q 000731 410 AILSDGCLCVVD 421 (1325)
Q Consensus 410 s~s~Dgti~lw~ 421 (1325)
+.+.||.+++|.
T Consensus 496 sYsEDgllKLWk 507 (508)
T KOG0275|consen 496 SYSEDGLLKLWK 507 (508)
T ss_pred hhcccchhhhcC
Confidence 999999999996
No 71
>PTZ00420 coronin; Provisional
Probab=99.79 E-value=7.2e-17 Score=198.63 Aligned_cols=228 Identities=12% Similarity=0.045 Sum_probs=150.4
Q ss_pred EECCCcEEEEeCCCCe-EEEeceecCcEEEEEEcCC-CCeEEEEeCCccEEEEeec-Cc-eeeeeeccccCCCceeccCc
Q 000731 93 GTSSGLLLLHSVDGNA-TEVVGRVEGGVRFISPSPD-GDLLGVTTGFGQILVMTHD-WD-LLYENPLEELAEGFDVHEPE 168 (1325)
Q Consensus 93 as~dG~I~lw~~~~~~-~e~vg~~~~~I~~~awSPD-G~~LA~~s~dgtV~l~s~~-~d-~~~e~~l~~~~~~~~Vs~tq 168 (1325)
|+.+|.|.+|+..... +..+..|.+.|.+++|||+ +.+||+++.|++|++|+.. .. ..... . .++ ..
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i--~-----~p~--~~ 120 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEI--K-----DPQ--CI 120 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcccccc--c-----cce--EE
Confidence 5667889999976543 3334456899999999997 8999999999999998632 11 01000 0 000 12
Q ss_pred cccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeecCCCCceeEEEEccCCCeEEEEecCCCCCC
Q 000731 169 LSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENK 248 (1325)
Q Consensus 169 f~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~~~v~~lawsPdG~~IAs~~~d~~~~~ 248 (1325)
+.+|...|.+++|+|+|.+++.+++ .|++|+|||..+|+...... +...+.+++|+|+|++||+++.|
T Consensus 121 L~gH~~~V~sVaf~P~g~~iLaSgS------~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D----- 188 (568)
T PTZ00420 121 LKGHKKKISIIDWNPMNYYIMCSSG------FDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVG----- 188 (568)
T ss_pred eecCCCcEEEEEECCCCCeEEEEEe------CCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecC-----
Confidence 4467788999999999987641443 36899999998888776665 45678999999999999999875
Q ss_pred CCeEEEEeC-CCceEEEEEeccCCCC----cEEEEEEccCCCeeEEEEccCC-CCeEEEEEeeCCeeEEEeEEEEecCCc
Q 000731 249 CPSIVFYER-NGLERSSFDINEQIDS----TVELLKWNCMSDLLAAVVRFEE-YDSVKICFFSNNHWYLKYEIRYLRRDG 322 (1325)
Q Consensus 249 ~~~V~~~e~-nGl~~~~f~l~~~~~~----~V~~laWSpDg~~LAs~~~d~~-~~~VqLW~~~n~~wylkqel~~~~~~~ 322 (1325)
..|++||. .|....+ +..|... .++...|++|+.+|++++.++. ..+|+|||+.+..--+ +.+..+....
T Consensus 189 -~~IrIwD~Rsg~~i~t--l~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl-~~~~ld~~~~ 264 (568)
T PTZ00420 189 -KHMHIIDPRKQEIASS--FHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSAL-VTMSIDNASA 264 (568)
T ss_pred -CEEEEEECCCCcEEEE--EecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCce-EEEEecCCcc
Confidence 57999994 4433333 3333211 2334457799999999887642 2279999988632111 1222211112
Q ss_pred -EEEEEccCCCcEEEEEecCCcEE
Q 000731 323 -IRFMWHPTKPLQLICWTLDGQIT 345 (1325)
Q Consensus 323 -~~v~Wsp~~~~~L~~~~~~g~~~ 345 (1325)
..-.|+++.+..+..+.+|+.+.
T Consensus 265 ~L~p~~D~~tg~l~lsGkGD~tIr 288 (568)
T PTZ00420 265 PLIPHYDESTGLIYLIGKGDGNCR 288 (568)
T ss_pred ceEEeeeCCCCCEEEEEECCCeEE
Confidence 34466666665555555565554
No 72
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.78 E-value=2.8e-18 Score=181.17 Aligned_cols=278 Identities=16% Similarity=0.163 Sum_probs=204.6
Q ss_pred CCEEEEEEcc---CCCEEEEEECCCcEEEEeCCCCeE-EEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceee
Q 000731 76 DSITAFDYLM---EKEALIVGTSSGLLLLHSVDGNAT-EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLY 151 (1325)
Q Consensus 76 ~~V~~v~~sp---dg~~La~as~dG~I~lw~~~~~~~-e~vg~~~~~I~~~awSPDG~~LA~~s~dgtV~l~s~~~d~~~ 151 (1325)
..|++++||| +|-.|++++.||.=.|-+-+|+.. -.+..|.+.|+....+.+-..-|+++.|=|-++ |+.++
T Consensus 15 rpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakv----w~a~t 90 (334)
T KOG0278|consen 15 RPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKV----WDAVT 90 (334)
T ss_pred cceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhh----hhhhh
Confidence 4799999986 888999999999999888888764 355557999999999999999999999988866 56667
Q ss_pred eeeccccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCc-eeeeecCCCCceeEEEE
Q 000731 152 ENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGT-LQASSELKAFMGAVLEW 230 (1325)
Q Consensus 152 e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~-l~~t~e~~~~~v~~law 230 (1325)
+-.++... |..-|..++|+.|.++|. .++ .+..+||||.+.-+ ......+|.+.|..+-|
T Consensus 91 gdelhsf~------------hkhivk~~af~~ds~~ll-tgg------~ekllrvfdln~p~App~E~~ghtg~Ir~v~w 151 (334)
T KOG0278|consen 91 GDELHSFE------------HKHIVKAVAFSQDSNYLL-TGG------QEKLLRVFDLNRPKAPPKEISGHTGGIRTVLW 151 (334)
T ss_pred hhhhhhhh------------hhheeeeEEecccchhhh-ccc------hHHHhhhhhccCCCCCchhhcCCCCcceeEEE
Confidence 66666653 334568999999999999 553 35789999974332 22235578899999999
Q ss_pred ccCCCeEEEEecCCCCCCCCeEEEEe-CCCceEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCee
Q 000731 231 MPSGANIAAVYDRKSENKCPSIVFYE-RNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHW 309 (1325)
Q Consensus 231 sPdG~~IAs~~~d~~~~~~~~V~~~e-~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~n~~w 309 (1325)
.-.-+.|.|+.+| .+|++|| +.|.+.....+ ...|.++..|+||++|.++... +|.+|+.++..-
T Consensus 152 c~eD~~iLSSadd------~tVRLWD~rTgt~v~sL~~----~s~VtSlEvs~dG~ilTia~gs----sV~Fwdaksf~~ 217 (334)
T KOG0278|consen 152 CHEDKCILSSADD------KTVRLWDHRTGTEVQSLEF----NSPVTSLEVSQDGRILTIAYGS----SVKFWDAKSFGL 217 (334)
T ss_pred eccCceEEeeccC------CceEEEEeccCcEEEEEec----CCCCcceeeccCCCEEEEecCc----eeEEeccccccc
Confidence 9999999998775 5699999 56766554333 2458999999999999988655 599999988652
Q ss_pred EEEeEEEEecCCcEEEEEccCCCcEEEEEecCCcEEEEEEEEeeeeCCCeeEEEEeCCEEEEeecCCcCCCCCceeeeec
Q 000731 310 YLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLK 389 (1325)
Q Consensus 310 ylkqel~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDG~~l~lt~l~~~~vPpPm~~~~l~ 389 (1325)
|| +... +....+.+-+|++. .+..+..++.+.. |-+.+ |..+- .+.-+
T Consensus 218 -lK-s~k~-P~nV~SASL~P~k~-~fVaGged~~~~k--fDy~T------------geEi~--------------~~nkg 265 (334)
T KOG0278|consen 218 -LK-SYKM-PCNVESASLHPKKE-FFVAGGEDFKVYK--FDYNT------------GEEIG--------------SYNKG 265 (334)
T ss_pred -ee-eccC-ccccccccccCCCc-eEEecCcceEEEE--EeccC------------Cceee--------------ecccC
Confidence 22 2222 12345667889884 3445444433322 22211 11110 01235
Q ss_pred CCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCC
Q 000731 390 FPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPA 424 (1325)
Q Consensus 390 ~~~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~~~~ 424 (1325)
|.++|.+|.||||| ...|+++.||+|+||+...
T Consensus 266 h~gpVhcVrFSPdG--E~yAsGSEDGTirlWQt~~ 298 (334)
T KOG0278|consen 266 HFGPVHCVRFSPDG--ELYASGSEDGTIRLWQTTP 298 (334)
T ss_pred CCCceEEEEECCCC--ceeeccCCCceEEEEEecC
Confidence 78999999999999 8999999999999999864
No 73
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.78 E-value=4.2e-15 Score=169.98 Aligned_cols=411 Identities=13% Similarity=0.080 Sum_probs=270.8
Q ss_pred eecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCc--------E
Q 000731 28 LDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGL--------L 99 (1325)
Q Consensus 28 ~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~V~~v~~spdg~~La~as~dG~--------I 99 (1325)
+=+-++.||++..=..+|-|.. ..+.. ..+| ++.|.+++.+||-..+++|-..|+ |
T Consensus 73 ~lptgE~vyfvA~V~Vl~n~ee--~~Qr~----------y~GH----~ddikc~~vHPdri~vatGQ~ag~~g~~~~phv 136 (626)
T KOG2106|consen 73 LLPTGELVYFVAAVGVLYNWEE--RSQRH----------YLGH----NDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHV 136 (626)
T ss_pred EccCccEEEEeccEEEEEeehh--hhccc----------ccCC----CCceEEEeecCCceeeccCcccccCCCcCCCee
Confidence 3356777888776655666644 22211 2223 578999999999988887766664 8
Q ss_pred EEEeCCC-CeEEEeceecCcEEEEEEcCC--CCeEEEEe--CCccEEEEeecCceeeeeeccccCCCceeccCccccCCC
Q 000731 100 LLHSVDG-NATEVVGRVEGGVRFISPSPD--GDLLGVTT--GFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFS 174 (1325)
Q Consensus 100 ~lw~~~~-~~~e~vg~~~~~I~~~awSPD--G~~LA~~s--~dgtV~l~s~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~ 174 (1325)
++||..+ ..+.++|..+.||.|++||+- |.+|+... .+..+.+|+..|. ..+.+-. ..+.
T Consensus 137 riWdsv~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~----~~~~~vk-----------~sne 201 (626)
T KOG2106|consen 137 RIWDSVTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKK----AKLGPVK-----------TSNE 201 (626)
T ss_pred eecccccceeeeeeccccccceeeeecccCCCceEEEecCCCccccchhhchhh----hccCcce-----------eccc
Confidence 9999765 345678888999999999984 45555553 2334555543222 2211110 1123
Q ss_pred CeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeee---ecCC-CCceeEEEEccCCCeEEEEecCCCCCCCC
Q 000731 175 FKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQAS---SELK-AFMGAVLEWMPSGANIAAVYDRKSENKCP 250 (1325)
Q Consensus 175 ~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t---~e~~-~~~v~~lawsPdG~~IAs~~~d~~~~~~~ 250 (1325)
.+.-..|.|-+.-+. +. .+.+.+..|+++.|.+... ++.+ ...|.+++|.|+|..|..=| .+
T Consensus 202 ~v~~a~FHPtd~nli-it------~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdviTgDS-------~G 267 (626)
T KOG2106|consen 202 VVFLATFHPTDPNLI-IT------CGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDVITGDS-------GG 267 (626)
T ss_pred eEEEEEeccCCCcEE-EE------eCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCCEEeecC-------Cc
Confidence 567889999887666 44 2458999999977766554 4443 25689999999999775322 46
Q ss_pred eEEEEeCCCceEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeEEEeEEEEecCCc--EEEEEc
Q 000731 251 SIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDG--IRFMWH 328 (1325)
Q Consensus 251 ~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~n~~wylkqel~~~~~~~--~~v~Ws 328 (1325)
.|.+|.+.+.+...-.. .+++.|.+|.---||++|- ++.|+ .|-+|| .||.-. +++..+...+ ..+.
T Consensus 268 ~i~Iw~~~~~~~~k~~~--aH~ggv~~L~~lr~GtllS-GgKDR---ki~~Wd-~~y~k~--r~~elPe~~G~iRtv~-- 336 (626)
T KOG2106|consen 268 NILIWSKGTNRISKQVH--AHDGGVFSLCMLRDGTLLS-GGKDR---KIILWD-DNYRKL--RETELPEQFGPIRTVA-- 336 (626)
T ss_pred eEEEEeCCCceEEeEee--ecCCceEEEEEecCccEee-cCccc---eEEecc-cccccc--ccccCchhcCCeeEEe--
Confidence 79999997766543222 3467899999999999887 88998 899999 776532 3444433322 2221
Q ss_pred cCCCcEEEEEecCCcEEE--------------EEEEEeee--eCCCeeEEEEeCCEEEEeecCCcCCCCCceeeeecCCC
Q 000731 329 PTKPLQLICWTLDGQITT--------------YNFIWTTA--VMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPT 392 (1325)
Q Consensus 329 p~~~~~L~~~~~~g~~~~--------------~~~~~~~~--~~d~~~v~viDG~~l~lt~l~~~~vPpPm~~~~l~~~~ 392 (1325)
+.++- |.+++..+.+.. .+-.|..+ |++...+.....+++.+|. .... .++....+
T Consensus 337 e~~~d-i~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~-~~k~------~wt~~~~d 408 (626)
T KOG2106|consen 337 EGKGD-ILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN-DHKL------EWTKIIED 408 (626)
T ss_pred cCCCc-EEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc-CCce------eEEEEecC
Confidence 22222 556654433322 12235544 5555555566667788887 2221 23445678
Q ss_pred CEEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccccccCCceeEeeeccccccCcEEEEEEecCCeEEEEEecCCCCc
Q 000731 393 AVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHS 472 (1325)
Q Consensus 393 ~V~~VaFSpdg~~~~LAs~s~Dgti~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~~~~~ 472 (1325)
++.+++|+|.| .+|+++..|...+.+..+...... . .....+.-+.|+|+|.+||+++.+ +.
T Consensus 409 ~~~~~~fhpsg---~va~Gt~~G~w~V~d~e~~~lv~~--------~-----~d~~~ls~v~ysp~G~~lAvgs~d--~~ 470 (626)
T KOG2106|consen 409 PAECADFHPSG---VVAVGTATGRWFVLDTETQDLVTI--------H-----TDNEQLSVVRYSPDGAFLAVGSHD--NH 470 (626)
T ss_pred ceeEeeccCcc---eEEEeeccceEEEEecccceeEEE--------E-----ecCCceEEEEEcCCCCEEEEecCC--Ce
Confidence 89999999998 999999999999999876433310 0 113468888999999999999876 67
Q ss_pred eEEEEeecccCccccchhhhhhhhcccccccccccccccceeeeeecccCCcEEEEeeCCCCCceEEEEeeCCeEEEE
Q 000731 473 NYFRGATLNEDGLLGFYAQEIELACSEDHVQGLLTCAGWHAKVSTQIPLEGLVIAIAPNNAKKYSAFLQFHGGKISEY 550 (1325)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~q~~dG~v~~~ 550 (1325)
+.++.++-+| ..+........ .+|+++-+|+ |++.+.-++.|=.+..|
T Consensus 471 iyiy~Vs~~g----------------------------~~y~r~~k~~g-s~ithLDwS~-Ds~~~~~~S~d~eiLyW 518 (626)
T KOG2106|consen 471 IYIYRVSANG----------------------------RKYSRVGKCSG-SPITHLDWSS-DSQFLVSNSGDYEILYW 518 (626)
T ss_pred EEEEEECCCC----------------------------cEEEEeeeecC-ceeEEeeecC-CCceEEeccCceEEEEE
Confidence 7788775433 23333333333 7889999988 88888888888888888
No 74
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.78 E-value=2.6e-18 Score=196.00 Aligned_cols=281 Identities=15% Similarity=0.134 Sum_probs=206.7
Q ss_pred CCCEEEEEEcc-CCCEEEEEECCCcEEEEeCCC-C-eEEEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceee
Q 000731 75 GDSITAFDYLM-EKEALIVGTSSGLLLLHSVDG-N-ATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLY 151 (1325)
Q Consensus 75 ~~~V~~v~~sp-dg~~La~as~dG~I~lw~~~~-~-~~e~vg~~~~~I~~~awSPDG~~LA~~s~dgtV~l~s~~~d~~~ 151 (1325)
...|.++.|+| .+..|++++.||.|+|||+-+ + .+...-+|..+|.+++||++|..+.++|-|++|++| |+-+
T Consensus 214 ~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlw----DtET 289 (503)
T KOG0282|consen 214 TKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLW----DTET 289 (503)
T ss_pred ccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeee----cccc
Confidence 35799999999 899999999999999999854 3 345555679999999999999999999999999776 4444
Q ss_pred eeeccccCCCceeccCccccCCCCeEEEEEecCC-cEEEEeeccccccCCCCEEEEEECCCCceeeeecCCCCceeEEEE
Q 000731 152 ENPLEELAEGFDVHEPELSSSFSFKSPISWRGDG-KYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEW 230 (1325)
Q Consensus 152 e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG-~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~~~v~~law 230 (1325)
+..+.... .+....++.|.||+ ..|. ++. .++.|+-||.++|+.......|-+.+..|.|
T Consensus 290 G~~~~~f~------------~~~~~~cvkf~pd~~n~fl-~G~------sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F 350 (503)
T KOG0282|consen 290 GQVLSRFH------------LDKVPTCVKFHPDNQNIFL-VGG------SDKKIRQWDIRSGKVVQEYDRHLGAILDITF 350 (503)
T ss_pred ceEEEEEe------------cCCCceeeecCCCCCcEEE-Eec------CCCcEEEEeccchHHHHHHHhhhhheeeeEE
Confidence 44432221 11235889999999 5666 553 4689999999899998888888999999999
Q ss_pred ccCCCeEEEEecCCCCCCCCeEEEEeCC-CceEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCC-e
Q 000731 231 MPSGANIAAVYDRKSENKCPSIVFYERN-GLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNN-H 308 (1325)
Q Consensus 231 sPdG~~IAs~~~d~~~~~~~~V~~~e~n-Gl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~n~-~ 308 (1325)
-|+|+..+++++++ .|++||-. +-.+. +... +......+|.-+|++..+|..+-|. .|-++.+.+. .
T Consensus 351 ~~~g~rFissSDdk------s~riWe~~~~v~ik-~i~~-~~~hsmP~~~~~P~~~~~~aQs~dN---~i~ifs~~~~~r 419 (503)
T KOG0282|consen 351 VDEGRRFISSSDDK------SVRIWENRIPVPIK-NIAD-PEMHTMPCLTLHPNGKWFAAQSMDN---YIAIFSTVPPFR 419 (503)
T ss_pred ccCCceEeeeccCc------cEEEEEcCCCccch-hhcc-hhhccCcceecCCCCCeehhhccCc---eEEEEecccccc
Confidence 99999999999974 59999832 11111 1111 1223567899999999999999888 7888886531 1
Q ss_pred eEEEeEEEEecCCc--EEEEEccCCCcEEEEEecCCcEEEEEEEEeeeeCCCeeEEEEeCCEEEEeecCCcCCCCCceee
Q 000731 309 WYLKYEIRYLRRDG--IRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLF 386 (1325)
Q Consensus 309 wylkqel~~~~~~~--~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDG~~l~lt~l~~~~vPpPm~~~ 386 (1325)
-..|..+..|.-.+ ..+.||||+.. |+.++.+|.+..++ |.+. ++ ..
T Consensus 420 ~nkkK~feGh~vaGys~~v~fSpDG~~-l~SGdsdG~v~~wd--wkt~---------------kl-------------~~ 468 (503)
T KOG0282|consen 420 LNKKKRFEGHSVAGYSCQVDFSPDGRT-LCSGDSDGKVNFWD--WKTT---------------KL-------------VS 468 (503)
T ss_pred cCHhhhhcceeccCceeeEEEcCCCCe-EEeecCCccEEEee--chhh---------------hh-------------hh
Confidence 11223333333333 77999999875 77877777664332 2211 00 01
Q ss_pred ee-cCCCCEEEEEEecCCCCCEEEEEECCCcEEEEe
Q 000731 387 SL-KFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVD 421 (1325)
Q Consensus 387 ~l-~~~~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~ 421 (1325)
.+ .|+.++..|.|+|.-. +.+|+++.||.|++|+
T Consensus 469 ~lkah~~~ci~v~wHP~e~-Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 469 KLKAHDQPCIGVDWHPVEP-SKVATCGWDGLIKIWD 503 (503)
T ss_pred ccccCCcceEEEEecCCCc-ceeEecccCceeEecC
Confidence 22 2677889999999864 7899999999999996
No 75
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.77 E-value=1.7e-15 Score=173.09 Aligned_cols=393 Identities=15% Similarity=0.158 Sum_probs=245.9
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEE
Q 000731 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1325)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~V~~v~~spdg~~La~as~dG~I~l 101 (1325)
.+....|-|-...|.+....+.|+.|++ ..+.. .+... +.+-.. ...|.++.|.++|+. ++|-++|+|.+
T Consensus 202 ~v~~a~FHPtd~nliit~Gk~H~~Fw~~--~~~~l-~k~~~----~fek~e--kk~Vl~v~F~engdv-iTgDS~G~i~I 271 (626)
T KOG2106|consen 202 VVFLATFHPTDPNLIITCGKGHLYFWTL--RGGSL-VKRQG----IFEKRE--KKFVLCVTFLENGDV-ITGDSGGNILI 271 (626)
T ss_pred eEEEEEeccCCCcEEEEeCCceEEEEEc--cCCce-EEEee----cccccc--ceEEEEEEEcCCCCE-EeecCCceEEE
Confidence 4555667665555555555455999998 33332 11111 111111 257999999999986 58999999999
Q ss_pred EeCCCCeEE-EeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeeeccccC-------CC--ce-ec-----
Q 000731 102 HSVDGNATE-VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELA-------EG--FD-VH----- 165 (1325)
Q Consensus 102 w~~~~~~~e-~vg~~~~~I~~~awSPDG~~LA~~s~dgtV~l~s~~~d~~~e~~l~~~~-------~~--~~-Vs----- 165 (1325)
|+..+.++. .+-.|++||.+++---||.+|- ++.|..|..|+.+...+.++.+...- ++ .. |.
T Consensus 272 w~~~~~~~~k~~~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~ 350 (626)
T KOG2106|consen 272 WSKGTNRISKQVHAHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNF 350 (626)
T ss_pred EeCCCceEEeEeeecCCceEEEEEecCccEee-cCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccce
Confidence 999887663 3338899999999999998776 99999999999887777776665432 11 11 10
Q ss_pred ------cCccc----cCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeecCCCCceeEEEEccCCC
Q 000731 166 ------EPELS----SSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGA 235 (1325)
Q Consensus 166 ------~tqf~----~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~~~v~~lawsPdG~ 235 (1325)
+.-|. +|.+..+.++-.|+...|+|++ .++.+++|+ +-++..+-. ......+++|.|.|
T Consensus 351 iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~g-------qdk~v~lW~--~~k~~wt~~-~~d~~~~~~fhpsg- 419 (626)
T KOG2106|consen 351 ILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCG-------QDKHVRLWN--DHKLEWTKI-IEDPAECADFHPSG- 419 (626)
T ss_pred EEEeeecCCceEEEEecccceeeEEcCCChhheeecc-------CcceEEEcc--CCceeEEEE-ecCceeEeeccCcc-
Confidence 22222 6788899999999999999442 469999998 344444322 45567899999999
Q ss_pred eEEEEecCCCCCCCCeEEEEeCCCceEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeC-CeeEEEeE
Q 000731 236 NIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSN-NHWYLKYE 314 (1325)
Q Consensus 236 ~IAs~~~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~n-~~wylkqe 314 (1325)
.||.|..- +...+.+... +...+++.. ...+..++|||||..||+++.|. .|.|+.++. ..-|-+.-
T Consensus 420 ~va~Gt~~------G~w~V~d~e~--~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~---~iyiy~Vs~~g~~y~r~~ 487 (626)
T KOG2106|consen 420 VVAVGTAT------GRWFVLDTET--QDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDN---HIYIYRVSANGRKYSRVG 487 (626)
T ss_pred eEEEeecc------ceEEEEeccc--ceeEEEEec-CCceEEEEEcCCCCEEEEecCCC---eEEEEEECCCCcEEEEee
Confidence 88887653 2333444321 222334433 56799999999999999999999 899999874 33232211
Q ss_pred EEEecCCc-EEEEEccCCCcEEEEEecCCcEEEEEEEEeeeeCCCeeEEEEeCCEEEEeecCCcCCCCCceeeee--cCC
Q 000731 315 IRYLRRDG-IRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSL--KFP 391 (1325)
Q Consensus 315 l~~~~~~~-~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDG~~l~lt~l~~~~vPpPm~~~~l--~~~ 391 (1325)
..+ ... +.+.||+|+.. |+.- +|.+.. ..|........ ..+ +.++...-+ .. .-+..+ .+.
T Consensus 488 -k~~-gs~ithLDwS~Ds~~-~~~~--S~d~ei--LyW~~~~~~~~-ts~---kDvkW~t~~-c~----lGF~v~g~s~~ 551 (626)
T KOG2106|consen 488 -KCS-GSPITHLDWSSDSQF-LVSN--SGDYEI--LYWKPSECKQI-TSV---KDVKWATYT-CT----LGFEVFGGSDG 551 (626)
T ss_pred -eec-CceeEEeeecCCCce-EEec--cCceEE--EEEccccCccc-cee---cceeeeeeE-EE----EEEEEecccCC
Confidence 122 244 88999999875 3333 344433 24532211100 011 111111100 00 000111 134
Q ss_pred CCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccccccCCceeEeeeccccccCcEEEEEEecCCeEEEEEecCCCC
Q 000731 392 TAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRH 471 (1325)
Q Consensus 392 ~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~~~~ 471 (1325)
..|+.++-|.+. +++|++...|+|+||..+-.... ..-++. ..+..-|.+++|+.++..+.+..- ..
T Consensus 552 t~i~a~~rs~~~--~~lA~gdd~g~v~lf~yPc~s~r--A~~he~-------~ghs~~vt~V~Fl~~d~~li~tg~--D~ 618 (626)
T KOG2106|consen 552 TDINAVARSHCE--KLLASGDDFGKVHLFSYPCSSPR--APSHEY-------GGHSSHVTNVAFLCKDSHLISTGK--DT 618 (626)
T ss_pred chHHHhhhhhhh--hhhhccccCceEEEEccccCCCc--ccceee-------ccccceeEEEEEeeCCceEEecCC--Cc
Confidence 557788888887 89999999999999998632111 111111 234557899999988876655442 24
Q ss_pred ceEEEE
Q 000731 472 SNYFRG 477 (1325)
Q Consensus 472 ~~~~~~ 477 (1325)
++..|.
T Consensus 619 Si~qW~ 624 (626)
T KOG2106|consen 619 SIMQWR 624 (626)
T ss_pred eEEEEE
Confidence 555554
No 76
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.77 E-value=5.7e-17 Score=196.51 Aligned_cols=264 Identities=9% Similarity=0.062 Sum_probs=176.6
Q ss_pred EeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeeeccc--------------------------cC-----
Q 000731 111 VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEE--------------------------LA----- 159 (1325)
Q Consensus 111 ~vg~~~~~I~~~awSPDG~~LA~~s~dgtV~l~s~~~d~~~e~~l~~--------------------------~~----- 159 (1325)
+-+.|.+.|+|+.|||||++||+|+.|+.|.||.-.-++........ ..
T Consensus 262 ~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~ 341 (712)
T KOG0283|consen 262 ISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRK 341 (712)
T ss_pred cccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccccc
Confidence 34478999999999999999999999999999853321110000000 00
Q ss_pred --C--Ccee-------ccCc---cccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeecCCCCce
Q 000731 160 --E--GFDV-------HEPE---LSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMG 225 (1325)
Q Consensus 160 --~--~~~V-------s~tq---f~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~~~v 225 (1325)
+ ...+ +++- |.||.+.|..|+||-++- |. +++. |+|||+|+...-+++.++. |...|
T Consensus 342 ~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~f-LL-SSSM------DKTVRLWh~~~~~CL~~F~-HndfV 412 (712)
T KOG0283|consen 342 GSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNF-LL-SSSM------DKTVRLWHPGRKECLKVFS-HNDFV 412 (712)
T ss_pred ccCCccccCCCccccccccchhhhhccchhheecccccCCe-eE-eccc------cccEEeecCCCcceeeEEe-cCCee
Confidence 0 0000 0221 338999999999998774 55 4543 6999999998889999998 77789
Q ss_pred eEEEEcc-CCCeEEEEecCCCCCCCCeEEEEeCCCceEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEe
Q 000731 226 AVLEWMP-SGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFF 304 (1325)
Q Consensus 226 ~~lawsP-dG~~IAs~~~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~ 304 (1325)
++|+|+| |-+++.||+-| +.|++|..-..+.-.+ ..-..-|.+++|+|||+...+|+.+| ..+++++
T Consensus 413 TcVaFnPvDDryFiSGSLD------~KvRiWsI~d~~Vv~W---~Dl~~lITAvcy~PdGk~avIGt~~G---~C~fY~t 480 (712)
T KOG0283|consen 413 TCVAFNPVDDRYFISGSLD------GKVRLWSISDKKVVDW---NDLRDLITAVCYSPDGKGAVIGTFNG---YCRFYDT 480 (712)
T ss_pred EEEEecccCCCcEeecccc------cceEEeecCcCeeEee---hhhhhhheeEEeccCCceEEEEEecc---EEEEEEc
Confidence 9999999 67899999986 6799998543322221 11124699999999999999999999 8999999
Q ss_pred eCCeeEEEeEEEEecC-----C-cEEEEEccCCCcEEEEEecCCcEEEEEEEEeeeeCCCeeEEEEeCCEEEEeecCCcC
Q 000731 305 SNNHWYLKYEIRYLRR-----D-GIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSL 378 (1325)
Q Consensus 305 ~n~~wylkqel~~~~~-----~-~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDG~~l~lt~l~~~~ 378 (1325)
.+........|..+.+ . .+.+.+.|..+..+.+.+.|.+ |++.+++...
T Consensus 481 ~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSr-------------------------IRI~d~~~~~ 535 (712)
T KOG0283|consen 481 EGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSR-------------------------IRIYDGRDKD 535 (712)
T ss_pred cCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCc-------------------------eEEEeccchh
Confidence 8865444444444321 1 2556666665554444443333 3333332111
Q ss_pred CCCCce-eeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCC
Q 000731 379 MPPPMY-LFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAP 425 (1325)
Q Consensus 379 vPpPm~-~~~l~~~~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~~~~~ 425 (1325)
+ .+ ++-+.-.+.-...+|+.|| +.|++++.|..|++|+.+..
T Consensus 536 l---v~KfKG~~n~~SQ~~Asfs~Dg--k~IVs~seDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 536 L---VHKFKGFRNTSSQISASFSSDG--KHIVSASEDSWVYIWKNDSF 578 (712)
T ss_pred h---hhhhcccccCCcceeeeEccCC--CEEEEeecCceEEEEeCCCC
Confidence 0 00 0001112223467899999 99999999999999998753
No 77
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=6.6e-17 Score=191.89 Aligned_cols=277 Identities=14% Similarity=0.125 Sum_probs=194.4
Q ss_pred EEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeeeccccCCCceeccCccccCCCCeEEEEEecCCcEEEEeecccccc
Q 000731 119 VRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSS 198 (1325)
Q Consensus 119 I~~~awSPDG~~LA~~s~dgtV~l~s~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~ 198 (1325)
.+-+.|| -...||+|.+. .|.+|+..-..+.... .. +.+.++++.|++||.+|| ++.
T Consensus 180 ~nlldWs-s~n~laValg~-~vylW~~~s~~v~~l~--~~-------------~~~~vtSv~ws~~G~~La-vG~----- 236 (484)
T KOG0305|consen 180 LNLLDWS-SANVLAVALGQ-SVYLWSASSGSVTELC--SF-------------GEELVTSVKWSPDGSHLA-VGT----- 236 (484)
T ss_pred hhHhhcc-cCCeEEEEecc-eEEEEecCCCceEEeE--ec-------------CCCceEEEEECCCCCEEE-Eee-----
Confidence 4568899 44688888775 6889874322222221 10 135789999999999999 875
Q ss_pred CCCCEEEEEECCCCceeeeecC-CCCceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeCC-CceEEEEEeccCCCCcEE
Q 000731 199 KLHKRLKVWERDSGTLQASSEL-KAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERN-GLERSSFDINEQIDSTVE 276 (1325)
Q Consensus 199 ~~d~~irVWd~~~G~l~~t~e~-~~~~v~~lawsPdG~~IAs~~~d~~~~~~~~V~~~e~n-Gl~~~~f~l~~~~~~~V~ 276 (1325)
.++.|.|||+.+.+...+... |.+.+.+++|+ +..+.+|+++ ..|..++.. +..+.. ++.+ +...|.
T Consensus 237 -~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~------~~I~~~dvR~~~~~~~-~~~~-H~qeVC 305 (484)
T KOG0305|consen 237 -SDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRD------GKILNHDVRISQHVVS-TLQG-HRQEVC 305 (484)
T ss_pred -cCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCC------CcEEEEEEecchhhhh-hhhc-ccceee
Confidence 458999999988777777777 99999999999 6778888885 568888843 222222 2332 356799
Q ss_pred EEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeEEEeEEEEecCCcEEEEEccCCCcEEEEEecCCcEEEEEEEEeeeeC
Q 000731 277 LLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVM 356 (1325)
Q Consensus 277 ~laWSpDg~~LAs~~~d~~~~~VqLW~~~n~~wylkqel~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~ 356 (1325)
.++||+|+.+||+++.|. .+.|||....++ ++.+.-|......++|+|=.+..|+++. |.-
T Consensus 306 gLkws~d~~~lASGgnDN---~~~Iwd~~~~~p--~~~~~~H~aAVKA~awcP~q~~lLAsGG--Gs~------------ 366 (484)
T KOG0305|consen 306 GLKWSPDGNQLASGGNDN---VVFIWDGLSPEP--KFTFTEHTAAVKALAWCPWQSGLLATGG--GSA------------ 366 (484)
T ss_pred eeEECCCCCeeccCCCcc---ceEeccCCCccc--cEEEeccceeeeEeeeCCCccCceEEcC--CCc------------
Confidence 999999999999999998 999999854332 2233333233477899997776566654 321
Q ss_pred CCeeEEEEeCCEEEEeecCCcCCCCCceeeeecCCCCEEEEEEecCCCCCEEEE--EECCCcEEEEeCCCCCccccccCC
Q 000731 357 ENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAA--ILSDGCLCVVDLPAPDMLEDLEGT 434 (1325)
Q Consensus 357 d~~~v~viDG~~l~lt~l~~~~vPpPm~~~~l~~~~~V~~VaFSpdg~~~~LAs--~s~Dgti~lw~~~~~~~~~~~~g~ 434 (1325)
+.+|++|+.... .....+...+.|.+|.||+.. +-|++ +..++.|.||+.++......+.||
T Consensus 367 ---------D~~i~fwn~~~g-----~~i~~vdtgsQVcsL~Wsk~~--kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH 430 (484)
T KOG0305|consen 367 ---------DRCIKFWNTNTG-----ARIDSVDTGSQVCSLIWSKKY--KELLSTHGYSENQITLWKYPSMKLVAELLGH 430 (484)
T ss_pred ---------ccEEEEEEcCCC-----cEecccccCCceeeEEEcCCC--CEEEEecCCCCCcEEEEeccccceeeeecCC
Confidence 123344433211 112234456789999999998 44444 567889999999875555445554
Q ss_pred ceeEeeeccccccCcEEEEEEecCCeEEEEEecCCCCceEEEEe
Q 000731 435 EFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGA 478 (1325)
Q Consensus 435 ~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~~~~~~~~~~~ 478 (1325)
...|.+++|+|||..++++..+ .++.||++
T Consensus 431 ------------~~RVl~la~SPdg~~i~t~a~D--ETlrfw~~ 460 (484)
T KOG0305|consen 431 ------------TSRVLYLALSPDGETIVTGAAD--ETLRFWNL 460 (484)
T ss_pred ------------cceeEEEEECCCCCEEEEeccc--CcEEeccc
Confidence 5689999999999999998876 68888876
No 78
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.75 E-value=3e-17 Score=173.48 Aligned_cols=249 Identities=16% Similarity=0.205 Sum_probs=183.2
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEcc--CCCEEEEEECCCcE
Q 000731 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLM--EKEALIVGTSSGLL 99 (1325)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~V~~v~~sp--dg~~La~as~dG~I 99 (1325)
.+-....|--+-+|..||.|+.|...... . +++ +++-.+|++| .+.|+-++|.- -|.+||+++-||.|
T Consensus 13 ~IHda~lDyygkrlATcsSD~tVkIf~v~--~-n~~---s~ll~~L~Gh----~GPVwqv~wahPk~G~iLAScsYDgkV 82 (299)
T KOG1332|consen 13 MIHDAQLDYYGKRLATCSSDGTVKIFEVR--N-NGQ---SKLLAELTGH----SGPVWKVAWAHPKFGTILASCSYDGKV 82 (299)
T ss_pred hhhHhhhhhhcceeeeecCCccEEEEEEc--C-CCC---ceeeeEecCC----CCCeeEEeecccccCcEeeEeecCceE
Confidence 45556667778999999999987777762 2 111 1122236666 57899999976 79999999999999
Q ss_pred EEEeCCCCeEE---EeceecCcEEEEEEcCC--CCeEEEEeCCccEEEEeecCceeeeeeccccCCCceeccCccccCCC
Q 000731 100 LLHSVDGNATE---VVGRVEGGVRFISPSPD--GDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFS 174 (1325)
Q Consensus 100 ~lw~~~~~~~e---~vg~~~~~I~~~awSPD--G~~LA~~s~dgtV~l~s~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~ 174 (1325)
+||...+++.. ....|+..|++++|-|. |=+||.++.||+|.+.+-+-+- ...++.-+..|.-
T Consensus 83 IiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g------------~w~t~ki~~aH~~ 150 (299)
T KOG1332|consen 83 IIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSG------------GWTTSKIVFAHEI 150 (299)
T ss_pred EEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCC------------Cccchhhhhcccc
Confidence 99999887543 44457899999999998 5689999999999887633220 0001111224666
Q ss_pred CeEEEEEecC---C-----------cEEEEeeccccccCCCCEEEEEECCCC--ceeeeecCCCCceeEEEEccCC----
Q 000731 175 FKSPISWRGD---G-----------KYFATLSEFCNSSKLHKRLKVWERDSG--TLQASSELKAFMGAVLEWMPSG---- 234 (1325)
Q Consensus 175 ~i~~isWspD---G-----------~~lAtvss~d~~~~~d~~irVWd~~~G--~l~~t~e~~~~~v~~lawsPdG---- 234 (1325)
++.+++|.|- | +.|| ++ +-|..|+||.-++| ++-.++++|.++|..+||.|.-
T Consensus 151 GvnsVswapa~~~g~~~~~~~~~~~krlv-Sg------GcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~ 223 (299)
T KOG1332|consen 151 GVNSVSWAPASAPGSLVDQGPAAKVKRLV-SG------GCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPK 223 (299)
T ss_pred ccceeeecCcCCCccccccCcccccceee-cc------CCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCc
Confidence 8899999997 6 4566 44 34789999998554 4556789999999999999986
Q ss_pred CeEEEEecCCCCCCCCeEEEEeCCCceEEEEEec--cCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEee-CCee
Q 000731 235 ANIAAVYDRKSENKCPSIVFYERNGLERSSFDIN--EQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFS-NNHW 309 (1325)
Q Consensus 235 ~~IAs~~~d~~~~~~~~V~~~e~nGl~~~~f~l~--~~~~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~-n~~w 309 (1325)
..|||++.| ++|.+|..+.. ..++... .+....++.++||+.|.+||+++.|. .|.+|--+ +++|
T Consensus 224 s~iAS~SqD------g~viIwt~~~e-~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdN---kvtlwke~~~Gkw 291 (299)
T KOG1332|consen 224 STIASCSQD------GTVIIWTKDEE-YEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDN---KVTLWKENVDGKW 291 (299)
T ss_pred eeeEEecCC------CcEEEEEecCc-cCcccccccccCCcceEEEEEeccccEEEEecCCc---EEEEEEeCCCCcE
Confidence 469999986 46999987632 2222221 22235699999999999999999888 89999876 4466
No 79
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.75 E-value=1.5e-16 Score=169.57 Aligned_cols=237 Identities=17% Similarity=0.145 Sum_probs=178.7
Q ss_pred ceeEEeeecC-CCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEE
Q 000731 22 ILQFSALDIE-QNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLL 100 (1325)
Q Consensus 22 ~~~~~~~d~~-~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~V~~v~~spdg~~La~as~dG~I~ 100 (1325)
.+..++||+- .|.++++|.+..|..||. .+.+- +.. +...+.-..+.|+|+|+++|++..|..|.
T Consensus 66 svdql~w~~~~~d~~atas~dk~ir~wd~--r~~k~---~~~---------i~~~~eni~i~wsp~g~~~~~~~kdD~it 131 (313)
T KOG1407|consen 66 SVDQLCWDPKHPDLFATASGDKTIRIWDI--RSGKC---TAR---------IETKGENINITWSPDGEYIAVGNKDDRIT 131 (313)
T ss_pred chhhheeCCCCCcceEEecCCceEEEEEe--ccCcE---EEE---------eeccCcceEEEEcCCCCEEEEecCcccEE
Confidence 5666778754 678888899999999999 44442 111 11123456789999999999999999999
Q ss_pred EEeCCCCeEEEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEe-ecCceeeeeeccccCCCceeccCccccCCCCeEEE
Q 000731 101 LHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMT-HDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPI 179 (1325)
Q Consensus 101 lw~~~~~~~e~vg~~~~~I~~~awSPDG~~LA~~s~dgtV~l~s-~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~i 179 (1325)
..|..+.++.......-.++-++|+-++.+....++.|+|.|++ ..-+|+..+. +|...-.+|
T Consensus 132 ~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~----------------AH~snCicI 195 (313)
T KOG1407|consen 132 FIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIK----------------AHPSNCICI 195 (313)
T ss_pred EEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccc----------------cCCcceEEE
Confidence 99987755532223345688899999999999999999998875 2223333322 445567899
Q ss_pred EEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeecCCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEEEe-CC
Q 000731 180 SWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYE-RN 258 (1325)
Q Consensus 180 sWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~~~v~~lawsPdG~~IAs~~~d~~~~~~~~V~~~e-~n 258 (1325)
.|+|||+||| +++. |..+-+||.++-.+..+...++.+|..|+||-||++|||++.| +-|-+=+ ..
T Consensus 196 ~f~p~GryfA-~GsA------DAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSED------h~IDIA~vet 262 (313)
T KOG1407|consen 196 EFDPDGRYFA-TGSA------DALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASED------HFIDIAEVET 262 (313)
T ss_pred EECCCCceEe-eccc------cceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCcc------ceEEeEeccc
Confidence 9999999999 8765 4789999998888888888899999999999999999999986 3444433 35
Q ss_pred CceEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCC------CeEEEEEee
Q 000731 259 GLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEY------DSVKICFFS 305 (1325)
Q Consensus 259 Gl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~------~~VqLW~~~ 305 (1325)
|.+.-+ + +.++.-..++|+|..-+||-++.|..+ ++|+|+-..
T Consensus 263 Gd~~~e--I--~~~~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiFG~~ 311 (313)
T KOG1407|consen 263 GDRVWE--I--PCEGPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIFGLS 311 (313)
T ss_pred CCeEEE--e--eccCCceeEEecCCCceeeEEecCCCCccccccceeEEecCC
Confidence 544333 2 235668899999999999999998754 467776543
No 80
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.75 E-value=2.5e-15 Score=171.74 Aligned_cols=255 Identities=9% Similarity=0.031 Sum_probs=161.2
Q ss_pred CEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEE-EEEECCCcEEEEeCCCCeEE-
Q 000731 33 NRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEAL-IVGTSSGLLLLHSVDGNATE- 110 (1325)
Q Consensus 33 ~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~V~~v~~spdg~~L-a~as~dG~I~lw~~~~~~~e- 110 (1325)
+.+++.+.++.++.||+ .+++. +.+ +. ....+.+++|+|||+.+ ++++.++.|.+||..+++..
T Consensus 2 ~~~~s~~~d~~v~~~d~--~t~~~---~~~----~~-----~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~ 67 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDT--ATLEV---TRT----FP-----VGQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIG 67 (300)
T ss_pred cEEEEecCCCEEEEEEC--CCCce---EEE----EE-----CCCCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEE
Confidence 34556677889999998 45442 111 11 12356789999999977 56678899999999886543
Q ss_pred EeceecCcEEEEEEcCCCCeEEEEe-CCccEEEEeec-CceeeeeeccccCCCceeccCccccCCCCeEEEEEecCCcEE
Q 000731 111 VVGRVEGGVRFISPSPDGDLLGVTT-GFGQILVMTHD-WDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYF 188 (1325)
Q Consensus 111 ~vg~~~~~I~~~awSPDG~~LA~~s-~dgtV~l~s~~-~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~l 188 (1325)
.+.. ...+..++|+|||+.|++++ .+++|.+|+.. ...+..... ......++|+|||+++
T Consensus 68 ~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-----------------~~~~~~~~~~~dg~~l 129 (300)
T TIGR03866 68 TLPS-GPDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-----------------GVEPEGMAVSPDGKIV 129 (300)
T ss_pred eccC-CCCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-----------------CCCcceEEECCCCCEE
Confidence 2222 23467889999999887664 58899888632 122211110 1124679999999999
Q ss_pred EEeeccccccCCCCEEEEEECCCCceeeeecCCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeCCC-ceEEEEEe
Q 000731 189 ATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNG-LERSSFDI 267 (1325)
Q Consensus 189 Atvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~~~v~~lawsPdG~~IAs~~~d~~~~~~~~V~~~e~nG-l~~~~f~l 267 (1325)
+ +++. ....+.+||..++++..... .......++|+|+|++|+.++.. .+.|.+|+... .....+..
T Consensus 130 ~-~~~~-----~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~-----~~~v~i~d~~~~~~~~~~~~ 197 (300)
T TIGR03866 130 V-NTSE-----TTNMAHFIDTKTYEIVDNVL-VDQRPRFAEFTADGKELWVSSEI-----GGTVSVIDVATRKVIKKITF 197 (300)
T ss_pred E-EEec-----CCCeEEEEeCCCCeEEEEEE-cCCCccEEEECCCCCEEEEEcCC-----CCEEEEEEcCcceeeeeeee
Confidence 8 5532 23567889997777765433 22334789999999988655432 35799999653 22232222
Q ss_pred ccC----CCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeEEEeEEEEecCCcEEEEEccCCCcEEEE
Q 000731 268 NEQ----IDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLIC 337 (1325)
Q Consensus 268 ~~~----~~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~n~~wylkqel~~~~~~~~~v~Wsp~~~~~L~~ 337 (1325)
..+ .......++|||||+.+.++..+. +.|.+|+..+++- ...+. .......+.|+|++.. |++
T Consensus 198 ~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~--~~i~v~d~~~~~~--~~~~~-~~~~~~~~~~~~~g~~-l~~ 265 (300)
T TIGR03866 198 EIPGVHPEAVQPVGIKLTKDGKTAFVALGPA--NRVAVVDAKTYEV--LDYLL-VGQRVWQLAFTPDEKY-LLT 265 (300)
T ss_pred cccccccccCCccceEECCCCCEEEEEcCCC--CeEEEEECCCCcE--EEEEE-eCCCcceEEECCCCCE-EEE
Confidence 211 112345799999999866554321 2699999976532 22221 1223377889998875 444
No 81
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.75 E-value=1.6e-17 Score=189.59 Aligned_cols=276 Identities=12% Similarity=0.104 Sum_probs=198.2
Q ss_pred eeEEeeec-CCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEE
Q 000731 23 LQFSALDI-EQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1325)
Q Consensus 23 ~~~~~~d~-~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~V~~v~~spdg~~La~as~dG~I~l 101 (1325)
+.++-|-+ -+..+.+++-|+.|+.|++ ..... . +.+ +.+| ...|.++.|+.+|..+.+++-|+.|++
T Consensus 217 vsai~~fp~~~hLlLS~gmD~~vklW~v--y~~~~-~-lrt----f~gH----~k~Vrd~~~s~~g~~fLS~sfD~~lKl 284 (503)
T KOG0282|consen 217 VSAIQWFPKKGHLLLSGGMDGLVKLWNV--YDDRR-C-LRT----FKGH----RKPVRDASFNNCGTSFLSASFDRFLKL 284 (503)
T ss_pred cchhhhccceeeEEEecCCCceEEEEEE--ecCcc-e-ehh----hhcc----hhhhhhhhccccCCeeeeeecceeeee
Confidence 44444555 5677778888999999999 44221 0 111 3334 357999999999999999999999999
Q ss_pred EeCCCCeEEEeceecCcEEEEEEcCCC-CeEEEEeCCccEEEEe-ecCceeeeeeccccCCCceeccCccccCCCCeEEE
Q 000731 102 HSVDGNATEVVGRVEGGVRFISPSPDG-DLLGVTTGFGQILVMT-HDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPI 179 (1325)
Q Consensus 102 w~~~~~~~e~vg~~~~~I~~~awSPDG-~~LA~~s~dgtV~l~s-~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~i 179 (1325)
||.+||++..-.+.+.-+.|+.|.||+ .++.+|+.|+.|+.|+ |..+.+.+..- |-+.+..|
T Consensus 285 wDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~----------------hLg~i~~i 348 (503)
T KOG0282|consen 285 WDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDR----------------HLGAILDI 348 (503)
T ss_pred eccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHh----------------hhhheeee
Confidence 999999887555556678999999999 7888888999998875 55554443321 22467999
Q ss_pred EEecCCcEEEEeeccccccCCCCEEEEEECCCCceeee-ecCCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeCC
Q 000731 180 SWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQAS-SELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERN 258 (1325)
Q Consensus 180 sWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t-~e~~~~~v~~lawsPdG~~IAs~~~d~~~~~~~~V~~~e~n 258 (1325)
.|.++|++|+ +++ .++++|||+-..+..++. ..+......+++-+|+|+.+|+=+-| +.|.+|..+
T Consensus 349 ~F~~~g~rFi-ssS------Ddks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~d------N~i~ifs~~ 415 (503)
T KOG0282|consen 349 TFVDEGRRFI-SSS------DDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMD------NYIAIFSTV 415 (503)
T ss_pred EEccCCceEe-eec------cCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccC------ceEEEEecc
Confidence 9999999999 553 358999999877766553 34444445789999999999977664 568888743
Q ss_pred CceEEE--EEeccCC-CCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeEEEeEEEEecCCc-EEEEEccCCCcE
Q 000731 259 GLERSS--FDINEQI-DSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDG-IRFMWHPTKPLQ 334 (1325)
Q Consensus 259 Gl~~~~--f~l~~~~-~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~n~~wylkqel~~~~~~~-~~v~Wsp~~~~~ 334 (1325)
-.-... -...++. .+--..+.|||||.+|++|..+| .+-+||+++-.- -..+..+ +.. +.+.|||..+..
T Consensus 416 ~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG---~v~~wdwkt~kl--~~~lkah-~~~ci~v~wHP~e~Sk 489 (503)
T KOG0282|consen 416 PPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDG---KVNFWDWKTTKL--VSKLKAH-DQPCIGVDWHPVEPSK 489 (503)
T ss_pred cccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCc---cEEEeechhhhh--hhccccC-CcceEEEEecCCCcce
Confidence 211000 0011111 24466899999999999999999 899999986432 1233333 233 889999999887
Q ss_pred EEEEecCCcEE
Q 000731 335 LICWTLDGQIT 345 (1325)
Q Consensus 335 L~~~~~~g~~~ 345 (1325)
++....+|.+.
T Consensus 490 vat~~w~G~Ik 500 (503)
T KOG0282|consen 490 VATCGWDGLIK 500 (503)
T ss_pred eEecccCceeE
Confidence 77777777664
No 82
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.75 E-value=3.1e-16 Score=172.89 Aligned_cols=282 Identities=10% Similarity=0.037 Sum_probs=204.5
Q ss_pred CCCEEEEEEccCCCEEEEEECCCcEEEEeCCCCeEE-EeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeee
Q 000731 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATE-VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYEN 153 (1325)
Q Consensus 75 ~~~V~~v~~spdg~~La~as~dG~I~lw~~~~~~~e-~vg~~~~~I~~~awSPDG~~LA~~s~dgtV~l~s~~~d~~~e~ 153 (1325)
.+.|.+|++-|-.+.+|+|+.|++|+|||+.++++. .+..|-..|..+++|+-.-+|.+++.|++|+.|+...+ .
T Consensus 151 lgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~n----k 226 (460)
T KOG0285|consen 151 LGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYN----K 226 (460)
T ss_pred cceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhh----h
Confidence 378999999999999999999999999999999876 34435678999999999999999999999998754322 1
Q ss_pred eccccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeecCCCCceeEEEEccC
Q 000731 154 PLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPS 233 (1325)
Q Consensus 154 ~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~~~v~~lawsPd 233 (1325)
-+. .+++|-.+|.+++-.|-=..|+ ++ +.|.++||||.++-....++.+|...|.++.+.|-
T Consensus 227 vIR-----------~YhGHlS~V~~L~lhPTldvl~-t~------grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~ 288 (460)
T KOG0285|consen 227 VIR-----------HYHGHLSGVYCLDLHPTLDVLV-TG------GRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPT 288 (460)
T ss_pred hHH-----------HhccccceeEEEeccccceeEE-ec------CCcceEEEeeecccceEEEecCCCCcceeEEeecC
Confidence 121 1236667899999999888888 44 34689999999899999999999999999999997
Q ss_pred CCeEEEEecCCCCCCCCeEEEEe-CCCceEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeEEE
Q 000731 234 GANIAAVYDRKSENKCPSIVFYE-RNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLK 312 (1325)
Q Consensus 234 G~~IAs~~~d~~~~~~~~V~~~e-~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~n~~wylk 312 (1325)
.-.|.+++.| .+|+||| ++|...- ++. ++...|.+++.+|.-..+|+++.|. |+-|++-.... -
T Consensus 289 dpqvit~S~D------~tvrlWDl~agkt~~--tlt-~hkksvral~lhP~e~~fASas~dn----ik~w~~p~g~f--~ 353 (460)
T KOG0285|consen 289 DPQVITGSHD------STVRLWDLRAGKTMI--TLT-HHKKSVRALCLHPKENLFASASPDN----IKQWKLPEGEF--L 353 (460)
T ss_pred CCceEEecCC------ceEEEeeeccCceeE--eee-cccceeeEEecCCchhhhhccCCcc----ceeccCCccch--h
Confidence 7778889886 4699999 5664432 232 3345799999999999999999997 98898765431 1
Q ss_pred eEEEEecCCcEEEEEccCCCcEEEEEecCCcEEEEEEEEeeeeCCCeeEEEEeCCEEEEeecCCc-------CCCCCcee
Q 000731 313 YEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLS-------LMPPPMYL 385 (1325)
Q Consensus 313 qel~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDG~~l~lt~l~~~-------~vPpPm~~ 385 (1325)
+.+..+...+..+.=..|+- +..+ .|.+.+..|+++.. .++.|-
T Consensus 354 ~nlsgh~~iintl~~nsD~v--~~~G-------------------------~dng~~~fwdwksg~nyQ~~~t~vqpG-- 404 (460)
T KOG0285|consen 354 QNLSGHNAIINTLSVNSDGV--LVSG-------------------------GDNGSIMFWDWKSGHNYQRGQTIVQPG-- 404 (460)
T ss_pred hccccccceeeeeeeccCce--EEEc-------------------------CCceEEEEEecCcCcccccccccccCC--
Confidence 22222111112222222211 1222 22333333333221 122222
Q ss_pred eeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCC
Q 000731 386 FSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAP 425 (1325)
Q Consensus 386 ~~l~~~~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~~~~~ 425 (1325)
++.-...|.+-+|...| ..|.++..|.+|++|.-+..
T Consensus 405 -Sl~sEagI~as~fDktg--~rlit~eadKtIk~~keDe~ 441 (460)
T KOG0285|consen 405 -SLESEAGIFASCFDKTG--SRLITGEADKTIKMYKEDEH 441 (460)
T ss_pred -ccccccceeEEeecccC--ceEEeccCCcceEEEecccc
Confidence 23445678889998888 89999999999999998764
No 83
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.75 E-value=1.1e-14 Score=173.52 Aligned_cols=113 Identities=17% Similarity=0.263 Sum_probs=86.5
Q ss_pred EEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeecCCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEEEe
Q 000731 177 SPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYE 256 (1325)
Q Consensus 177 ~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~~~v~~lawsPdG~~IAs~~~d~~~~~~~~V~~~e 256 (1325)
.-++|.|---+|| |++..++ ..|.|.||-- +|+.+.--+ .+-.+.+++|+|.--.+|++=. -+.+.+|.
T Consensus 19 ti~SWHPsePlfA-VA~fS~e--r~GSVtIfad-tGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe------~g~~~v~~ 87 (1416)
T KOG3617|consen 19 TISSWHPSEPLFA-VASFSPE--RGGSVTIFAD-TGEPQRDVT-YPVHATSLCWHPEEFVLAQGWE------MGVSDVQK 87 (1416)
T ss_pred cccccCCCCceeE-EEEecCC--CCceEEEEec-CCCCCcccc-cceehhhhccChHHHHHhhccc------cceeEEEe
Confidence 4578999999999 8888764 4578999976 888654321 2223478999999988998754 35688898
Q ss_pred CCCceEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEee
Q 000731 257 RNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFS 305 (1325)
Q Consensus 257 ~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~ 305 (1325)
.|..... +.+.++...|..|.|||||..|.++..-+ .|.+|...
T Consensus 88 ~~~~e~h--tv~~th~a~i~~l~wS~~G~~l~t~d~~g---~v~lwr~d 131 (1416)
T KOG3617|consen 88 TNTTETH--TVVETHPAPIQGLDWSHDGTVLMTLDNPG---SVHLWRYD 131 (1416)
T ss_pred cCCceee--eeccCCCCCceeEEecCCCCeEEEcCCCc---eeEEEEee
Confidence 7743322 45556677899999999999999998888 89999875
No 84
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.75 E-value=3.8e-17 Score=177.18 Aligned_cols=281 Identities=12% Similarity=0.137 Sum_probs=204.2
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCC-CCCEEEEEEccCCCEEEEEECCCcEE
Q 000731 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEP-GDSITAFDYLMEKEALIVGTSSGLLL 100 (1325)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~V~~v~~spdg~~La~as~dG~I~ 100 (1325)
.+.|..|.||++.|.++|-|+.|-.|+. .+++.. ..|... ....|.- .+.|.++.||.|+++||+|+.||.|+
T Consensus 215 h~EcA~FSPDgqyLvsgSvDGFiEVWny--~~GKlr---KDLkYQ-Aqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIK 288 (508)
T KOG0275|consen 215 HVECARFSPDGQYLVSGSVDGFIEVWNY--TTGKLR---KDLKYQ-AQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIK 288 (508)
T ss_pred chhheeeCCCCceEeeccccceeeeehh--ccchhh---hhhhhh-hhcceeecccceEEEeecccHHHhhccCcCCcEE
Confidence 4667789999999999999999999998 566531 111111 0011111 57899999999999999999999999
Q ss_pred EEeCCCCeEE--EeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeeeccccCCCceeccCccccCCCCeEE
Q 000731 101 LHSVDGNATE--VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSP 178 (1325)
Q Consensus 101 lw~~~~~~~e--~vg~~~~~I~~~awSPDG~~LA~~s~dgtV~l~s~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~ 178 (1325)
+|.+.++.+- .--.|..||+|++||.|+..+.+++-|.+|++- -..++..+. .|++|...+..
T Consensus 289 vWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiH----GlKSGK~LK-----------EfrGHsSyvn~ 353 (508)
T KOG0275|consen 289 VWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIH----GLKSGKCLK-----------EFRGHSSYVNE 353 (508)
T ss_pred EEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEe----ccccchhHH-----------HhcCccccccc
Confidence 9999998763 333688999999999999999999999999763 222333333 35578888899
Q ss_pred EEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeecC--CCCceeEEEEccCC-CeEEEEecCCCCCCCCeEEEE
Q 000731 179 ISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSEL--KAFMGAVLEWMPSG-ANIAAVYDRKSENKCPSIVFY 255 (1325)
Q Consensus 179 isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~--~~~~v~~lawsPdG-~~IAs~~~d~~~~~~~~V~~~ 255 (1325)
..|.+||.++. +++ .|++||||+..++++++++.+ .+..+.++-.=|.. ..+.++.+ .++|.+.
T Consensus 354 a~ft~dG~~ii-saS------sDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNr------sntv~im 420 (508)
T KOG0275|consen 354 ATFTDDGHHII-SAS------SDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNR------SNTVYIM 420 (508)
T ss_pred eEEcCCCCeEE-Eec------CCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcC------CCeEEEE
Confidence 99999999998 443 368999999999999999875 45567777666643 45555555 3678889
Q ss_pred eCCCceEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeEEEeEEEEecCCcEEEEEccCCCcEE
Q 000731 256 ERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQL 335 (1325)
Q Consensus 256 e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~n~~wylkqel~~~~~~~~~v~Wsp~~~~~L 335 (1325)
+..|.....|.--....+.-.+...||-|+.+-..+.|+ .+.-+.+..+. |...+..+..++..+.-||-... |
T Consensus 421 n~qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~---vlYCF~~~sG~--LE~tl~VhEkdvIGl~HHPHqNl-l 494 (508)
T KOG0275|consen 421 NMQGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDG---VLYCFSVLSGK--LERTLPVHEKDVIGLTHHPHQNL-L 494 (508)
T ss_pred eccceEEeeeccCCccCCceEEEEecCCCcEEEEEccCc---EEEEEEeecCc--eeeeeecccccccccccCcccch-h
Confidence 988877766643222234455677999999999999998 66656554442 44566666666666666775433 4
Q ss_pred EEEecCC
Q 000731 336 ICWTLDG 342 (1325)
Q Consensus 336 ~~~~~~g 342 (1325)
+..+.||
T Consensus 495 AsYsEDg 501 (508)
T KOG0275|consen 495 ASYSEDG 501 (508)
T ss_pred hhhcccc
Confidence 4444444
No 85
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=6.4e-14 Score=165.93 Aligned_cols=353 Identities=13% Similarity=0.090 Sum_probs=221.2
Q ss_pred CCEEEEEEccCCCEEEEEECCCcEEEEeCCCC---eEEEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeee
Q 000731 76 DSITAFDYLMEKEALIVGTSSGLLLLHSVDGN---ATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYE 152 (1325)
Q Consensus 76 ~~V~~v~~spdg~~La~as~dG~I~lw~~~~~---~~e~vg~~~~~I~~~awSPDG~~LA~~s~dgtV~l~s~~~d~~~e 152 (1325)
..|++++|+.++..||++-++|.|-+||+..+ +..+.|.-+..|.+++|+ +|..|.+++.+|.|.- ||+.+.
T Consensus 26 s~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~E----wDl~~l 100 (691)
T KOG2048|consen 26 SEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITE----WDLHTL 100 (691)
T ss_pred cceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEE----EecccC
Confidence 58999999999999999999999999999874 334667667889999999 5667889999999954 566555
Q ss_pred eeccccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeee--ecCCCCceeEEEE
Q 000731 153 NPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQAS--SELKAFMGAVLEW 230 (1325)
Q Consensus 153 ~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t--~e~~~~~v~~law 230 (1325)
.+....+ ...+.+++++-+|-+..++ ++.. ++.+..++...|++.+. +....+.+-+|+|
T Consensus 101 k~~~~~d-----------~~gg~IWsiai~p~~~~l~-Igcd------dGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw 162 (691)
T KOG2048|consen 101 KQKYNID-----------SNGGAIWSIAINPENTILA-IGCD------DGVLYDFSIGPDKITYKRSLMRQKSRVLSLSW 162 (691)
T ss_pred ceeEEec-----------CCCcceeEEEeCCccceEE-eecC------CceEEEEecCCceEEEEeecccccceEEEEEe
Confidence 4444333 2235689999999999999 8753 46888888877777654 3345578899999
Q ss_pred ccCCCeEEEEecCCCCCCCCeEEEEeCC-CceEEEEEe-----ccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEe
Q 000731 231 MPSGANIAAVYDRKSENKCPSIVFYERN-GLERSSFDI-----NEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFF 304 (1325)
Q Consensus 231 sPdG~~IAs~~~d~~~~~~~~V~~~e~n-Gl~~~~f~l-----~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~ 304 (1325)
+|+|..||+|+.| +.|++||.. |......+. ......-|++|.+=.||+ ||+|.+.| +|++||.
T Consensus 163 ~~~~~~i~~Gs~D------g~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~t-I~sgDS~G---~V~FWd~ 232 (691)
T KOG2048|consen 163 NPTGTKIAGGSID------GVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDST-IASGDSAG---TVTFWDS 232 (691)
T ss_pred cCCccEEEecccC------ceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCc-EEEecCCc---eEEEEcc
Confidence 9999999999985 579999942 221111111 111123488888888885 66777666 8999998
Q ss_pred eCCeeEEEeEEEEecCCcEEEEEccCCCcEEEEEecCCcEEEEEEE-----Eeee------eCCCeeEEEEe------CC
Q 000731 305 SNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFI-----WTTA------VMENSTALVID------GS 367 (1325)
Q Consensus 305 ~n~~wylkqel~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~-----~~~~------~~d~~~v~viD------G~ 367 (1325)
.+. .|.|....+..+..+++=.+++.. +.+..-++.+..+... |... ++|....+|++ |.
T Consensus 233 ~~g--TLiqS~~~h~adVl~Lav~~~~d~-vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~~l~sgG~ 309 (691)
T KOG2048|consen 233 IFG--TLIQSHSCHDADVLALAVADNEDR-VFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIENALISGGR 309 (691)
T ss_pred cCc--chhhhhhhhhcceeEEEEcCCCCe-EEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecceEEecce
Confidence 765 466666666566666666665543 5565556666553221 3332 33433444433 22
Q ss_pred --EEEEeecCCcCCCCCceeeeec--C-CCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccccccCCceeEeeec
Q 000731 368 --KILVTPLSLSLMPPPMYLFSLK--F-PTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACI 442 (1325)
Q Consensus 368 --~l~lt~l~~~~vPpPm~~~~l~--~-~~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~~~~~~~~~~~~g~~~~~~~~~ 442 (1325)
++.+.+.+.. ++..+... + .+.+ ++-+|. +.|...-....+.+|........++.+-. .+.. +
T Consensus 310 d~~l~i~~s~~~----~~~~h~~~~~~p~~~~--v~~a~~---~~L~~~w~~h~v~lwrlGS~~~~g~~~~~--~Llk-l 377 (691)
T KOG2048|consen 310 DFTLAICSSREF----KNMDHRQKNLFPASDR--VSVAPE---NRLLVLWKAHGVDLWRLGSVILQGEYNYI--HLLK-L 377 (691)
T ss_pred eeEEEEcccccc----Cchhhhccccccccce--eecCcc---ceEEEEeccccccceeccCcccccccChh--hhee-e
Confidence 2333333221 11111110 1 1111 122233 45666666667777776543221111100 0000 0
Q ss_pred cccccCcEEEEEEecCCeEEEEEecCCCCceEEEEee
Q 000731 443 SETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGAT 479 (1325)
Q Consensus 443 ~~~~~~~v~~l~~~~d~~lla~~~~~~~~~~~~~~~~ 479 (1325)
.-.....+.+-+-+|+|.++|.+.- +...++.+.
T Consensus 378 ~~k~~~nIs~~aiSPdg~~Ia~st~---~~~~iy~L~ 411 (691)
T KOG2048|consen 378 FTKEKENISCAAISPDGNLIAISTV---SRTKIYRLQ 411 (691)
T ss_pred ecCCccceeeeccCCCCCEEEEeec---cceEEEEec
Confidence 0112235777788999999998754 566777774
No 86
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.73 E-value=1.9e-16 Score=171.57 Aligned_cols=283 Identities=11% Similarity=0.065 Sum_probs=192.3
Q ss_pred CCCEEEEEEccCCCEEEEEECCCcEEEEeCCC------------C-------eEEEeceecCcEEEEEEcCCCCeEEEEe
Q 000731 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDG------------N-------ATEVVGRVEGGVRFISPSPDGDLLGVTT 135 (1325)
Q Consensus 75 ~~~V~~v~~spdg~~La~as~dG~I~lw~~~~------------~-------~~e~vg~~~~~I~~~awSPDG~~LA~~s 135 (1325)
.+...+-+|+|||..+|+|++|-.|+|.|+.- + .+..+=.|-+.|+++.|.|-..+|++++
T Consensus 112 K~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~s 191 (430)
T KOG0640|consen 112 KSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGS 191 (430)
T ss_pred ccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEecc
Confidence 35788999999999999999999999999751 0 1222333568899999999999999999
Q ss_pred CCccEEEEeecCceeeeeeccccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCcee
Q 000731 136 GFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQ 215 (1325)
Q Consensus 136 ~dgtV~l~s~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~ 215 (1325)
.|++|++++-. .+......... .....+.+|+|.|-|.|++ +++ ..-++|+||.++-++.
T Consensus 192 rD~tvKlFDfs-K~saKrA~K~~------------qd~~~vrsiSfHPsGefll-vgT------dHp~~rlYdv~T~Qcf 251 (430)
T KOG0640|consen 192 RDNTVKLFDFS-KTSAKRAFKVF------------QDTEPVRSISFHPSGEFLL-VGT------DHPTLRLYDVNTYQCF 251 (430)
T ss_pred CCCeEEEEecc-cHHHHHHHHHh------------hccceeeeEeecCCCceEE-Eec------CCCceeEEeccceeEe
Confidence 99999886421 11111111110 0113569999999999999 874 3579999999887776
Q ss_pred eeec---CCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeCC-CceEEEEEeccCCCCcEEEEEEccCCCeeEEEE
Q 000731 216 ASSE---LKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERN-GLERSSFDINEQIDSTVELLKWNCMSDLLAAVV 291 (1325)
Q Consensus 216 ~t~e---~~~~~v~~lawsPdG~~IAs~~~d~~~~~~~~V~~~e~n-Gl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~ 291 (1325)
.... .|.+.|.++-+||.|++-++++.| +.|++||-- +.-...| -+.|+...|.+..|..||+++.+.+
T Consensus 252 vsanPd~qht~ai~~V~Ys~t~~lYvTaSkD------G~IklwDGVS~rCv~t~-~~AH~gsevcSa~Ftkn~kyiLsSG 324 (430)
T KOG0640|consen 252 VSANPDDQHTGAITQVRYSSTGSLYVTASKD------GAIKLWDGVSNRCVRTI-GNAHGGSEVCSAVFTKNGKYILSSG 324 (430)
T ss_pred eecCcccccccceeEEEecCCccEEEEeccC------CcEEeeccccHHHHHHH-HhhcCCceeeeEEEccCCeEEeecC
Confidence 5543 477889999999999999999986 569999831 1101101 0134456799999999999999999
Q ss_pred ccCCCCeEEEEEeeCCeeEEEeEEEEecCCc-----EEEEEccCCCcEEEEEecCCcEEEEEEEEeeeeCCC-eeEEEEe
Q 000731 292 RFEEYDSVKICFFSNNHWYLKYEIRYLRRDG-----IRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMEN-STALVID 365 (1325)
Q Consensus 292 ~d~~~~~VqLW~~~n~~wylkqel~~~~~~~-----~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~-~~v~viD 365 (1325)
.|. +|+||.+++.... ++.......+ +...|.....+ + ..|+.. ..+..||
T Consensus 325 ~DS---~vkLWEi~t~R~l--~~YtGAg~tgrq~~rtqAvFNhtEdy----------------V--l~pDEas~slcsWd 381 (430)
T KOG0640|consen 325 KDS---TVKLWEISTGRML--KEYTGAGTTGRQKHRTQAVFNHTEDY----------------V--LFPDEASNSLCSWD 381 (430)
T ss_pred Ccc---eeeeeeecCCceE--EEEecCCcccchhhhhhhhhcCccce----------------E--EccccccCceeecc
Confidence 998 9999999887532 2222110000 11111111111 1 011111 1122233
Q ss_pred CC---EEEEeecCCcCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCC
Q 000731 366 GS---KILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLP 423 (1325)
Q Consensus 366 G~---~l~lt~l~~~~vPpPm~~~~l~~~~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~~~ 423 (1325)
.. ++.+ ..+.|.+.|..+.-||.+ .-+.+++.|..+++|--.
T Consensus 382 aRtadr~~l--------------~slgHn~a~R~i~HSP~~--p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 382 ARTADRVAL--------------LSLGHNGAVRWIVHSPVE--PAFMTCSDDFRARFWYRR 426 (430)
T ss_pred ccchhhhhh--------------cccCCCCCceEEEeCCCC--Cceeeecccceeeeeeec
Confidence 22 2222 245788999999999998 799999999999999753
No 87
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.73 E-value=4.8e-17 Score=171.93 Aligned_cols=253 Identities=17% Similarity=0.228 Sum_probs=182.6
Q ss_pred eecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeeeccccCCCceeccCccccCCCCeEEEEEec--CCcEEEEe
Q 000731 114 RVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRG--DGKYFATL 191 (1325)
Q Consensus 114 ~~~~~I~~~awSPDG~~LA~~s~dgtV~l~s~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWsp--DG~~lAtv 191 (1325)
.|++-|..+...--|+.||+++.|++|++....-+.. ...+. .+.+|.+.++.++|-. -|.+|| +
T Consensus 9 ~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~-s~ll~-----------~L~Gh~GPVwqv~wahPk~G~iLA-S 75 (299)
T KOG1332|consen 9 QHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQ-SKLLA-----------ELTGHSGPVWKVAWAHPKFGTILA-S 75 (299)
T ss_pred hhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCC-ceeee-----------EecCCCCCeeEEeecccccCcEee-E
Confidence 4677788777888899999999999998865321111 01111 1227778899999988 899999 5
Q ss_pred eccccccCCCCEEEEEECCCCceeee--ecCCCCceeEEEEccC--CCeEEEEecCCCCCCCCeEEEEeCCC---ceEEE
Q 000731 192 SEFCNSSKLHKRLKVWERDSGTLQAS--SELKAFMGAVLEWMPS--GANIAAVYDRKSENKCPSIVFYERNG---LERSS 264 (1325)
Q Consensus 192 ss~d~~~~~d~~irVWd~~~G~l~~t--~e~~~~~v~~lawsPd--G~~IAs~~~d~~~~~~~~V~~~e~nG---l~~~~ 264 (1325)
+++ |++|-||.-++|+-... ...|.+.+++|+|.|. |-+||+++.| ++|.+++-+. ....
T Consensus 76 csY------DgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSD------G~vsvl~~~~~g~w~t~- 142 (299)
T KOG1332|consen 76 CSY------DGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSD------GKVSVLTYDSSGGWTTS- 142 (299)
T ss_pred eec------CceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCC------CcEEEEEEcCCCCccch-
Confidence 555 48999999977754333 3458889999999997 5689999986 4577766332 2211
Q ss_pred EEeccCCCCcEEEEEEccC---C-----------CeeEEEEccCCCCeEEEEEeeCCeeEEEeEEEEecCCcEEEEEccC
Q 000731 265 FDINEQIDSTVELLKWNCM---S-----------DLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPT 330 (1325)
Q Consensus 265 f~l~~~~~~~V~~laWSpD---g-----------~~LAs~~~d~~~~~VqLW~~~n~~wylkqel~~~~~~~~~v~Wsp~ 330 (1325)
.+..-++..|++++|.|- | +.||+++-|. .|+||...+..|.+-+.+..|.+-...++|.|.
T Consensus 143 -ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn---~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~ 218 (299)
T KOG1332|consen 143 -KIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDN---LVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPS 218 (299)
T ss_pred -hhhhccccccceeeecCcCCCccccccCcccccceeeccCCcc---ceeeeecCCcchhhhhhhhhcchhhhhhhhccc
Confidence 122234567999999997 5 5699999888 999999999999887777776555588999998
Q ss_pred CCc---EEEEEecCCcEEEEEEEEeeeeCCCeeEEEEeCCEEEEeecCCcCCCCCceeeeecCCCCEEEEEEecCCCCCE
Q 000731 331 KPL---QLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNC 407 (1325)
Q Consensus 331 ~~~---~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDG~~l~lt~l~~~~vPpPm~~~~l~~~~~V~~VaFSpdg~~~~ 407 (1325)
.++ +++..++||.+. +|... . ++..=+.|.+ -+++..++.|+||+.| +.
T Consensus 219 ~gl~~s~iAS~SqDg~vi----Iwt~~-~--------e~e~wk~tll-------------~~f~~~~w~vSWS~sG--n~ 270 (299)
T KOG1332|consen 219 VGLPKSTIASCSQDGTVI----IWTKD-E--------EYEPWKKTLL-------------EEFPDVVWRVSWSLSG--NI 270 (299)
T ss_pred cCCCceeeEEecCCCcEE----EEEec-C--------ccCccccccc-------------ccCCcceEEEEEeccc--cE
Confidence 753 567777787764 45433 0 1111111111 0267889999999999 99
Q ss_pred EEEEECCCcEEEEeCCC
Q 000731 408 LAAILSDGCLCVVDLPA 424 (1325)
Q Consensus 408 LAs~s~Dgti~lw~~~~ 424 (1325)
||+...|+.|.+|.-+.
T Consensus 271 LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 271 LAVSGGDNKVTLWKENV 287 (299)
T ss_pred EEEecCCcEEEEEEeCC
Confidence 99999999999998764
No 88
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.72 E-value=2e-15 Score=161.45 Aligned_cols=296 Identities=13% Similarity=0.038 Sum_probs=198.4
Q ss_pred CCEEEEEEccCCCEEEEEECCCcEEEEeC-CCCeEEEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeee
Q 000731 76 DSITAFDYLMEKEALIVGTSSGLLLLHSV-DGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENP 154 (1325)
Q Consensus 76 ~~V~~v~~spdg~~La~as~dG~I~lw~~-~~~~~e~vg~~~~~I~~~awSPDG~~LA~~s~dgtV~l~s~~~d~~~e~~ 154 (1325)
-.++-|.|..+|..|-+++.|.++-+|-. ++.++-....|.+.|+|+..+-|.+.|++++.|.++++|+ +-++..
T Consensus 11 RplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWD----v~tGk~ 86 (327)
T KOG0643|consen 11 RPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWD----VETGKQ 86 (327)
T ss_pred cccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEE----cCCCcE
Confidence 47899999999999999999999999865 6666655555799999999999999999999999998874 334443
Q ss_pred ccccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCC-------ceeeeecCCCCceeE
Q 000731 155 LEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSG-------TLQASSELKAFMGAV 227 (1325)
Q Consensus 155 l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G-------~l~~t~e~~~~~v~~ 227 (1325)
+.... ....+..+.|+++|.+++ .++.+.. +..+.|-++|.+.. ++......++..+..
T Consensus 87 la~~k------------~~~~Vk~~~F~~~gn~~l-~~tD~~m-g~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~ 152 (327)
T KOG0643|consen 87 LATWK------------TNSPVKRVDFSFGGNLIL-ASTDKQM-GYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITS 152 (327)
T ss_pred EEEee------------cCCeeEEEeeccCCcEEE-EEehhhc-CcceEEEEEEccCChhhhcccCceEEecCCccceee
Confidence 33221 113568999999999888 5443322 34577889987532 212222234566788
Q ss_pred EEEccCCCeEEEEecCCCCCCCCeEEEEe-CCCceEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeC
Q 000731 228 LEWMPSGANIAAVYDRKSENKCPSIVFYE-RNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSN 306 (1325)
Q Consensus 228 lawsPdG~~IAs~~~d~~~~~~~~V~~~e-~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~n 306 (1325)
.-|+|-|+.|.+|..+ +.|..|+ +||...-+ -...+...|++|.+|||.++..+++.|. +-+|||+..
T Consensus 153 a~Wg~l~~~ii~Ghe~------G~is~~da~~g~~~v~--s~~~h~~~Ind~q~s~d~T~FiT~s~Dt---takl~D~~t 221 (327)
T KOG0643|consen 153 ALWGPLGETIIAGHED------GSISIYDARTGKELVD--SDEEHSSKINDLQFSRDRTYFITGSKDT---TAKLVDVRT 221 (327)
T ss_pred eeecccCCEEEEecCC------CcEEEEEcccCceeee--chhhhccccccccccCCcceEEecccCc---cceeeeccc
Confidence 8999999999999875 5699999 56644221 0112355899999999999999999999 999999987
Q ss_pred CeeEEEeEEEEecCCc-EEEEEccCCCcEEEEEecCCcEEEEEEEEeeeeCCCeeEEEEeCCEEEEe-ecCCcCCCCCce
Q 000731 307 NHWYLKYEIRYLRRDG-IRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVT-PLSLSLMPPPMY 384 (1325)
Q Consensus 307 ~~wylkqel~~~~~~~-~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDG~~l~lt-~l~~~~vPpPm~ 384 (1325)
.... ++ |....+ .+.+.+|-... +...+|+- ..+. . ..+++.=+.- .|-...... ..
T Consensus 222 l~v~--Kt--y~te~PvN~aaisP~~d~---VilgGGqe-A~dV----T--------TT~~r~GKFEArFyh~i~eE-Ei 280 (327)
T KOG0643|consen 222 LEVL--KT--YTTERPVNTAAISPLLDH---VILGGGQE-AMDV----T--------TTSTRAGKFEARFYHLIFEE-EI 280 (327)
T ss_pred eeeE--EE--eeecccccceecccccce---EEecCCce-eeee----e--------eecccccchhhhHHHHHHHH-Hh
Confidence 5421 12 211233 67778886654 22323432 1111 1 1111100000 000000000 00
Q ss_pred eeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCC
Q 000731 385 LFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLP 423 (1325)
Q Consensus 385 ~~~l~~~~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~~~ 423 (1325)
.+.-.|=++|++|||+|+| +..++++.||.|++.-++
T Consensus 281 grvkGHFGPINsvAfhPdG--ksYsSGGEDG~VR~h~Fd 317 (327)
T KOG0643|consen 281 GRVKGHFGPINSVAFHPDG--KSYSSGGEDGYVRLHHFD 317 (327)
T ss_pred ccccccccCcceeEECCCC--cccccCCCCceEEEEEec
Confidence 0011367899999999999 999999999999998765
No 89
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.72 E-value=1e-15 Score=174.14 Aligned_cols=302 Identities=14% Similarity=0.109 Sum_probs=198.4
Q ss_pred EEEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeeec----cccC-CCceeccCcc--ccCCCCeEEEEE
Q 000731 109 TEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPL----EELA-EGFDVHEPEL--SSSFSFKSPISW 181 (1325)
Q Consensus 109 ~e~vg~~~~~I~~~awSPDG~~LA~~s~dgtV~l~s~~~d~~~e~~l----~~~~-~~~~Vs~tqf--~~~~~~i~~isW 181 (1325)
+..++.|.-.|.|++.|||++.+.+++.+++|.=| +..++... ..+. ...+-.+.++ ..|...+.+++-
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw----~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~av 210 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKW----DVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAV 210 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeee----ehhcCcccccccccchhhhhccCCCCcccccccceeEEEEE
Confidence 45667788999999999999999999999999655 44443321 1110 0001112222 267788999999
Q ss_pred ecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeecCCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeCCCce
Q 000731 182 RGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLE 261 (1325)
Q Consensus 182 spDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~~~v~~lawsPdG~~IAs~~~d~~~~~~~~V~~~e~nGl~ 261 (1325)
|+||+||| .+ +.++.|.||+.++++.+.++.+|.+.|.+++|+-.-+.+.|++.| ..|++|+.+-+.
T Consensus 211 S~Dgkyla-tg------g~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~D------rsvkvw~~~~~s 277 (479)
T KOG0299|consen 211 SSDGKYLA-TG------GRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASAD------RSVKVWSIDQLS 277 (479)
T ss_pred cCCCcEEE-ec------CCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecC------CceEEEehhHhH
Confidence 99999999 65 346899999999999999999999999999999988888888886 469999865322
Q ss_pred EEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeEEEeEEEEecC--CcEEEEEccCCCcEEEEEe
Q 000731 262 RSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRR--DGIRFMWHPTKPLQLICWT 339 (1325)
Q Consensus 262 ~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~n~~wylkqel~~~~~--~~~~v~Wsp~~~~~L~~~~ 339 (1325)
.-+ ++.+| +..|.+|.-..-++.+.++..|+ +++||.+..- .|. .|.+. +.-+++|=.+.. +..++
T Consensus 278 ~ve-tlyGH-qd~v~~IdaL~reR~vtVGgrDr---T~rlwKi~ee----sql-ifrg~~~sidcv~~In~~H--fvsGS 345 (479)
T KOG0299|consen 278 YVE-TLYGH-QDGVLGIDALSRERCVTVGGRDR---TVRLWKIPEE----SQL-IFRGGEGSIDCVAFINDEH--FVSGS 345 (479)
T ss_pred HHH-HHhCC-ccceeeechhcccceEEeccccc---eeEEEecccc----cee-eeeCCCCCeeeEEEecccc--eeecc
Confidence 111 12233 45788998888888898998999 9999998542 122 22221 123333333221 34444
Q ss_pred cCCcEEEEEEEEeeeeCCCeeEEEEeCCEEEEeecCCcCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEE
Q 000731 340 LDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCV 419 (1325)
Q Consensus 340 ~~g~~~~~~~~~~~~~~d~~~v~viDG~~l~lt~l~~~~vPpPm~~~~l~~~~~V~~VaFSpdg~~~~LAs~s~Dgti~l 419 (1325)
.+|.+. .|++. --+.|-+.++...+.|-| ..+.++.||++||-.|.. +++|+++.+|.|+|
T Consensus 346 dnG~Ia----LWs~~----------KKkplf~~~~AHgv~~~~---~~~~~~~Witsla~i~~s--dL~asGS~~G~vrL 406 (479)
T KOG0299|consen 346 DNGSIA----LWSLL----------KKKPLFTSRLAHGVIPEL---DPVNGNFWITSLAVIPGS--DLLASGSWSGCVRL 406 (479)
T ss_pred CCceEE----Eeeec----------ccCceeEeeccccccCCc---cccccccceeeeEecccC--ceEEecCCCCceEE
Confidence 444432 23322 111122222333333322 123345699999999998 89999999999999
Q ss_pred EeCCCCCccccccCCceeEeeeccccccCcEEEEEEecCCeEEEEEec
Q 000731 420 VDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHH 467 (1325)
Q Consensus 420 w~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~ 467 (1325)
|...+..- .+.+..+.+ -.+.|..|+|+++|..|.++..
T Consensus 407 W~i~~g~r-------~i~~l~~ls--~~GfVNsl~f~~sgk~ivagiG 445 (479)
T KOG0299|consen 407 WKIEDGLR-------AINLLYSLS--LVGFVNSLAFSNSGKRIVAGIG 445 (479)
T ss_pred EEecCCcc-------ccceeeecc--cccEEEEEEEccCCCEEEEecc
Confidence 99875311 011111111 1347899999999996666543
No 90
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.71 E-value=8.3e-16 Score=172.65 Aligned_cols=320 Identities=13% Similarity=0.169 Sum_probs=195.1
Q ss_pred CCCEEEEEEccCCC-EEEEEECCCcEEEEeCCC----C---eEE---EeceecCcEEEEEEcCCCCeEEEEeCCccEEEE
Q 000731 75 GDSITAFDYLMEKE-ALIVGTSSGLLLLHSVDG----N---ATE---VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVM 143 (1325)
Q Consensus 75 ~~~V~~v~~spdg~-~La~as~dG~I~lw~~~~----~---~~e---~vg~~~~~I~~~awSPDG~~LA~~s~dgtV~l~ 143 (1325)
...|.++.|.+.+. .||+|+.|.+|+||-++. + .++ .++.|+..|+++.|||+|++||+|+.+|+|.+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW 92 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW 92 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence 35799999999888 999999999999998742 2 444 566789999999999999999999999999999
Q ss_pred eecCceee--eeeccccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeecCC
Q 000731 144 THDWDLLY--ENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELK 221 (1325)
Q Consensus 144 s~~~d~~~--e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~ 221 (1325)
...-..+. +.+.... ...++.--...+|...+..++|+|||.+++ +++. +..+++||...|.++.+...|
T Consensus 93 k~~~~~~~~~d~e~~~~-ke~w~v~k~lr~h~~diydL~Ws~d~~~l~-s~s~------dns~~l~Dv~~G~l~~~~~dh 164 (434)
T KOG1009|consen 93 KQGDVRIFDADTEADLN-KEKWVVKKVLRGHRDDIYDLAWSPDSNFLV-SGSV------DNSVRLWDVHAGQLLAILDDH 164 (434)
T ss_pred EecCcCCccccchhhhC-ccceEEEEEecccccchhhhhccCCCceee-eeec------cceEEEEEeccceeEeecccc
Confidence 64311111 0000000 111221112236788899999999999999 6654 589999999999999999999
Q ss_pred CCceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeCCCceEEEEEec----cCCC-------------CcEEEEEEccCC
Q 000731 222 AFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDIN----EQID-------------STVELLKWNCMS 284 (1325)
Q Consensus 222 ~~~v~~lawsPdG~~IAs~~~d~~~~~~~~V~~~e~nGl~~~~f~l~----~~~~-------------~~V~~laWSpDg 284 (1325)
...+..++|-|-+++||+-+.|.. ......-|.+-+..++.-.++ .+.+ .--..++|+|||
T Consensus 165 ~~yvqgvawDpl~qyv~s~s~dr~--~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG 242 (434)
T KOG1009|consen 165 EHYVQGVAWDPLNQYVASKSSDRH--PEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDG 242 (434)
T ss_pred ccccceeecchhhhhhhhhccCcc--cceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCC
Confidence 999999999999999999888742 011111122222222211111 0001 124578999999
Q ss_pred CeeEEEEccC--CCC----eEEEEEeeCCeeEEEeEEEEec--CCc-EEEEEccCCCcEEEEEecCCcE--EEEEEEEee
Q 000731 285 DLLAAVVRFE--EYD----SVKICFFSNNHWYLKYEIRYLR--RDG-IRFMWHPTKPLQLICWTLDGQI--TTYNFIWTT 353 (1325)
Q Consensus 285 ~~LAs~~~d~--~~~----~VqLW~~~n~~wylkqel~~~~--~~~-~~v~Wsp~~~~~L~~~~~~g~~--~~~~~~~~~ 353 (1325)
.+|.+...-- +++ +..+++.+. |++-..-.+ ... ..+.++|--- .|.-....+.+ .-|..++
T Consensus 243 ~llvtPag~~~~g~~~~~n~tYvfsrk~----l~rP~~~lp~~~k~~lavr~~pVy~-elrp~~~~~~~~~lpyrlvf-- 315 (434)
T KOG1009|consen 243 SLLVTPAGLFKVGGGVFRNTSYVFSRKD----LKRPAARLPSPKKPALAVRFSPVYY-ELRPLSSEKFLFVLPYRLVF-- 315 (434)
T ss_pred cEEEcccceeeeCCceeeceeEeecccc----ccCceeecCCCCcceEEEEeeeeEE-EeccccccccccccccceEE--
Confidence 9998754321 111 223333322 222111111 111 3444444210 01110100000 0122222
Q ss_pred eeCCCeeEEEEeCCEEEEeecCCcCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCC
Q 000731 354 AVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPA 424 (1325)
Q Consensus 354 ~~~d~~~v~viDG~~l~lt~l~~~~vPpPm~~~~l~~~~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~~~~ 424 (1325)
++.--+.|++.+- ..+-|.+.-.--|=.++++++||+|| +.|++.+.||-..+-.++.
T Consensus 316 --------aiAt~~svyvydt---q~~~P~~~v~nihy~~iTDiaws~dg--~~l~vSS~DGyCS~vtfe~ 373 (434)
T KOG1009|consen 316 --------AIATKNSVYVYDT---QTLEPLAVVDNIHYSAITDIAWSDDG--SVLLVSSTDGFCSLVTFEP 373 (434)
T ss_pred --------EEeecceEEEecc---ccccceEEEeeeeeeeecceeecCCC--cEEEEeccCCceEEEEEcc
Confidence 2333334444432 12335543222366789999999999 8999999999888887764
No 91
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.71 E-value=2.6e-14 Score=171.94 Aligned_cols=383 Identities=13% Similarity=0.151 Sum_probs=243.2
Q ss_pred CEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEEEeCCCCeEE-E
Q 000731 33 NRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATE-V 111 (1325)
Q Consensus 33 ~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~V~~v~~spdg~~La~as~dG~I~lw~~~~~~~e-~ 111 (1325)
+.|..+++.+.+..|+. .++++ +.+ +.++ .+.|+++.=+|--+.+|+|..+|+|++.|+..+++- .
T Consensus 173 NKIvvGs~~G~lql~Nv--rt~K~---v~~----f~~~----~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~s 239 (910)
T KOG1539|consen 173 NKIVVGSSQGRLQLWNV--RTGKV---VYT----FQEF----FSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMS 239 (910)
T ss_pred eeEEEeecCCcEEEEEe--ccCcE---EEE----eccc----ccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEE
Confidence 56778888888999999 56665 332 3333 368999999999999999999999999999877654 3
Q ss_pred eceec-CcEEEEEEcCCCCe-EEEEeCCccEEEEeecCceeeeeeccccCCCceeccCccccCCCCeEEEEEecCCcEEE
Q 000731 112 VGRVE-GGVRFISPSPDGDL-LGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFA 189 (1325)
Q Consensus 112 vg~~~-~~I~~~awSPDG~~-LA~~s~dgtV~l~s~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lA 189 (1325)
+. |+ +.|++++|.-||+- ||+++..|.+.+|+-+-..+..+... .|++++....|-|.-..+.
T Consensus 240 Fk-~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~n--------------ah~~sv~~~~fl~~epVl~ 304 (910)
T KOG1539|consen 240 FK-QDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRN--------------AHYGSVTGATFLPGEPVLV 304 (910)
T ss_pred EE-ccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeec--------------cccCCcccceecCCCceEe
Confidence 33 45 88999999999985 56666779999997654443322211 3445666777776555655
Q ss_pred EeeccccccCCCCEEEEE--ECCCC--ceeeeecCCCCceeEEEEc-cCCCeEEEEecCCC----------------C--
Q 000731 190 TLSEFCNSSKLHKRLKVW--ERDSG--TLQASSELKAFMGAVLEWM-PSGANIAAVYDRKS----------------E-- 246 (1325)
Q Consensus 190 tvss~d~~~~~d~~irVW--d~~~G--~l~~t~e~~~~~v~~laws-PdG~~IAs~~~d~~----------------~-- 246 (1325)
+++ .|+.+++| |..+| .++..-.+|..+-.+|.|- .+|..|-+++.|.+ .
T Consensus 305 -ta~------~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~ 377 (910)
T KOG1539|consen 305 -TAG------ADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLH 377 (910)
T ss_pred -ecc------CCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccc
Confidence 443 24555555 43344 4455556676666777776 66777766655531 0
Q ss_pred -----------------------------------------CCCCeEEEEeCCCceEEEEEecc----CCCCcEEEEEEc
Q 000731 247 -----------------------------------------NKCPSIVFYERNGLERSSFDINE----QIDSTVELLKWN 281 (1325)
Q Consensus 247 -----------------------------------------~~~~~V~~~e~nGl~~~~f~l~~----~~~~~V~~laWS 281 (1325)
..+....-|+-...+.|+|.|.. +.+..+.+++-|
T Consensus 378 ~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs 457 (910)
T KOG1539|consen 378 NKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVS 457 (910)
T ss_pred cccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEe
Confidence 00122333443333445666652 134679999999
Q ss_pred cCCCeeEEEEccCCCCeEEEEEeeCCeeEEEeEE---EEecCCcEEEEEccCCCcEEEEEecCCcEEEEEEEE-------
Q 000731 282 CMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEI---RYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIW------- 351 (1325)
Q Consensus 282 pDg~~LAs~~~d~~~~~VqLW~~~n~~wylkqel---~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~------- 351 (1325)
+.|....+|++.| +|-+++++.+-. ...+ ..+....+.++-|..+.. ++..+.+|.+..++|.-
T Consensus 458 ~CGNF~~IG~S~G---~Id~fNmQSGi~--r~sf~~~~ah~~~V~gla~D~~n~~-~vsa~~~Gilkfw~f~~k~l~~~l 531 (910)
T KOG1539|consen 458 FCGNFVFIGYSKG---TIDRFNMQSGIH--RKSFGDSPAHKGEVTGLAVDGTNRL-LVSAGADGILKFWDFKKKVLKKSL 531 (910)
T ss_pred ccCceEEEeccCC---eEEEEEcccCee--ecccccCccccCceeEEEecCCCce-EEEccCcceEEEEecCCcceeeee
Confidence 9999999999988 999999876421 1111 011122255655544332 34444456554433321
Q ss_pred eeee--------CCCe-eEEEEeCCEEEEeecCCcCCCCCceeeee-cCCCCEEEEEEecCCCCCEEEEEECCCcEEEEe
Q 000731 352 TTAV--------MENS-TALVIDGSKILVTPLSLSLMPPPMYLFSL-KFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVD 421 (1325)
Q Consensus 352 ~~~~--------~d~~-~v~viDG~~l~lt~l~~~~vPpPm~~~~l-~~~~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~ 421 (1325)
.+.. ...+ .+.+.|.-.|.+.+.....| .+.+ +|.+.|++.+||||| +.|++++-|++|++||
T Consensus 532 ~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kv-----vR~f~gh~nritd~~FS~Dg--rWlisasmD~tIr~wD 604 (910)
T KOG1539|consen 532 RLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKV-----VREFWGHGNRITDMTFSPDG--RWLISASMDSTIRTWD 604 (910)
T ss_pred ccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhh-----hHHhhccccceeeeEeCCCC--cEEEEeecCCcEEEEe
Confidence 1110 0011 12233444455544322111 2345 489999999999999 9999999999999999
Q ss_pred CCCCCccccccCCceeEeeeccccccCcEEEEEEecCCeEEEEEecCCCCceEEEE
Q 000731 422 LPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRG 477 (1325)
Q Consensus 422 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~~~~~~~~~~ 477 (1325)
+++..++ . .+. -.+.+..+.|+|+|.+||+.+-+. +.+++|.
T Consensus 605 lpt~~lI---D--~~~--------vd~~~~sls~SPngD~LAT~Hvd~-~gIylWs 646 (910)
T KOG1539|consen 605 LPTGTLI---D--GLL--------VDSPCTSLSFSPNGDFLATVHVDQ-NGIYLWS 646 (910)
T ss_pred ccCccee---e--eEe--------cCCcceeeEECCCCCEEEEEEecC-ceEEEEE
Confidence 9875333 1 111 013678999999999999998753 4566774
No 92
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.71 E-value=1.7e-15 Score=168.84 Aligned_cols=266 Identities=13% Similarity=0.137 Sum_probs=184.0
Q ss_pred eeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCC---EEEEEECCCcEEEEe
Q 000731 27 ALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKE---ALIVGTSSGLLLLHS 103 (1325)
Q Consensus 27 ~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~V~~v~~spdg~---~La~as~dG~I~lw~ 103 (1325)
+++.-++.|+++|-|+.+..||. .++. +.+ +.+| .+.|.+++|.--.+ .+++|+.|.+++||-
T Consensus 110 sv~~~~~~IltgsYDg~~riWd~---~Gk~---~~~----~~Gh----t~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~ 175 (423)
T KOG0313|consen 110 SVKGASKWILTGSYDGTSRIWDL---KGKS---IKT----IVGH----TGPIKSVAWVIKNSSSCLFVSASMDQTLRLWK 175 (423)
T ss_pred hhcccCceEEEeecCCeeEEEec---CCce---EEE----EecC----CcceeeeEEEecCCccceEEEecCCceEEEEE
Confidence 45555899999999999999998 3332 111 3444 46788888855444 499999999999997
Q ss_pred CCCCe--EE----EeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeeeccccC------------CCceec
Q 000731 104 VDGNA--TE----VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELA------------EGFDVH 165 (1325)
Q Consensus 104 ~~~~~--~e----~vg~~~~~I~~~awSPDG~~LA~~s~dgtV~l~s~~~d~~~e~~l~~~~------------~~~~Vs 165 (1325)
.+-+. .+ +-| |..+|.+++-++||..+++++.|.+|++|+..-++..+..-.... ...+
T Consensus 176 ~~~~~~~~~~~~~~~G-Hk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P-- 252 (423)
T KOG0313|consen 176 WNVGENKVKALKVCRG-HKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTP-- 252 (423)
T ss_pred ecCchhhhhHHhHhcc-cccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCc--
Confidence 76432 11 235 699999999999999999999999999998222222211111000 0011
Q ss_pred cCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeecCCCCceeEEEEccCCCeEEEEecCCC
Q 000731 166 EPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKS 245 (1325)
Q Consensus 166 ~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~~~v~~lawsPdG~~IAs~~~d~~ 245 (1325)
-....+|...|.+|-|++.+-.+ +++ .|.+||+||.++|.+..+.... ....+++.+|..++||+|+.|+
T Consensus 253 ~vtl~GHt~~Vs~V~w~d~~v~y--S~S------wDHTIk~WDletg~~~~~~~~~-ksl~~i~~~~~~~Ll~~gssdr- 322 (423)
T KOG0313|consen 253 LVTLEGHTEPVSSVVWSDATVIY--SVS------WDHTIKVWDLETGGLKSTLTTN-KSLNCISYSPLSKLLASGSSDR- 322 (423)
T ss_pred eEEecccccceeeEEEcCCCceE--eec------ccceEEEEEeecccceeeeecC-cceeEeecccccceeeecCCCC-
Confidence 12344899999999999955443 333 4689999999999988876533 3458999999999999999975
Q ss_pred CCCCCeEEEEeC-CCc-eEEEEEeccCCCCcEEEEEEccCCC-eeEEEEccCCCCeEEEEEeeCCeeEEEeEEEEecCCc
Q 000731 246 ENKCPSIVFYER-NGL-ERSSFDINEQIDSTVELLKWNCMSD-LLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDG 322 (1325)
Q Consensus 246 ~~~~~~V~~~e~-nGl-~~~~f~l~~~~~~~V~~laWSpDg~-~LAs~~~d~~~~~VqLW~~~n~~wylkqel~~~~~~~ 322 (1325)
.|++||+ +|. ..-.+.+-+| .++|.++.|||-.. +|++++.|+ ++++||+..-.--| ..|..|.+..
T Consensus 323 -----~irl~DPR~~~gs~v~~s~~gH-~nwVssvkwsp~~~~~~~S~S~D~---t~klWDvRS~k~pl-ydI~~h~DKv 392 (423)
T KOG0313|consen 323 -----HIRLWDPRTGDGSVVSQSLIGH-KNWVSSVKWSPTNEFQLVSGSYDN---TVKLWDVRSTKAPL-YDIAGHNDKV 392 (423)
T ss_pred -----ceeecCCCCCCCceeEEeeecc-hhhhhheecCCCCceEEEEEecCC---eEEEEEeccCCCcc-eeeccCCceE
Confidence 4999994 331 1112233344 57999999999776 689999999 99999987532111 2343432223
Q ss_pred EEEEEcc
Q 000731 323 IRFMWHP 329 (1325)
Q Consensus 323 ~~v~Wsp 329 (1325)
.++.|..
T Consensus 393 l~vdW~~ 399 (423)
T KOG0313|consen 393 LSVDWNE 399 (423)
T ss_pred EEEeccC
Confidence 6777764
No 93
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.71 E-value=2.4e-16 Score=184.67 Aligned_cols=254 Identities=17% Similarity=0.225 Sum_probs=202.9
Q ss_pred HHHHHHHHhhccHHHHHHHHHhcc----ChhHHHHHHHHh--cCCcccc--hHhHHHHhcCCchhccccHHHhhcCHHHH
Q 000731 879 EEALKHLLWLADSEAVYEAALGLY----DLNLAAIVALNS--QRDPKEF--LPYLQELESMPPLLMRYTIDLRLQRFENA 950 (1325)
Q Consensus 879 e~alkyl~~L~d~n~Ly~~ALg~Y----D~~lal~VAq~s--qkDPkeY--LpfL~~L~~l~~~~~~~~Id~~L~rye~A 950 (1325)
++-|+|+.--.=-.+||+.|=.+| ||+-|+.-..|- ++..-|. +.|-.++-++++.|..... +.|+|+.|
T Consensus 648 e~il~~ia~alik~elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~--~~~q~daa 725 (1636)
T KOG3616|consen 648 EEILEHIAAALIKGELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLE--QIGQLDAA 725 (1636)
T ss_pred HHHHHHHHHHHHhhHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHH--HHHhHHHH
Confidence 566777643333346777765555 444443322221 1111111 4566667777777777665 68999999
Q ss_pred HHHHHHcCCCcHHHHHHHHHHHhcChHHHHhhc---CCcHHHHHHHHHHHHHHhccccHHHHHHHHHHcCCHHHHHHHHH
Q 000731 951 LKHIVSMGDSYHADCLNLMKKYAQLFPLGLKLI---TDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSSLEKAMKAYR 1027 (1325)
Q Consensus 951 l~~l~~~g~~~~d~ale~~~~~~~ly~~AL~L~---~d~~~~~~i~~~~a~~L~~~~~~~eAa~~y~~ag~~ekAl~~y~ 1027 (1325)
++||+++.. .-+|++..... +.|++|+.+. .|.......+-..|+|+.+.++|+.|..+|..++.+..|+.||.
T Consensus 726 inhfiea~~--~~kaieaai~a-kew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~~~~dai~my~ 802 (1636)
T KOG3616|consen 726 INHFIEANC--LIKAIEAAIGA-KEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEADLFKDAIDMYG 802 (1636)
T ss_pred HHHHHHhhh--HHHHHHHHhhh-hhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcchhHHHHHHHh
Confidence 999999966 79999999999 9999999998 56666667788899999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcCCHHHHHHHHHHhcCHHHHHHHHHhcCCch
Q 000731 1028 ASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCGDVTNGISLLIDARDWEEALRVAFMHRRED 1107 (1325)
Q Consensus 1028 ~ag~W~~al~la~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~yl~d~e~Av~~~~~~~~w~eA~rLa~~~~~~d 1107 (1325)
++|.|..|+.++.... .++....++..-|+.|.+.|+|.||.++|.. .|.++.||.||-+.+..++.+||+.+|...-
T Consensus 803 k~~kw~da~kla~e~~-~~e~t~~~yiakaedldehgkf~eaeqlyit-i~~p~~aiqmydk~~~~ddmirlv~k~h~d~ 880 (1636)
T KOG3616|consen 803 KAGKWEDAFKLAEECH-GPEATISLYIAKAEDLDEHGKFAEAEQLYIT-IGEPDKAIQMYDKHGLDDDMIRLVEKHHGDH 880 (1636)
T ss_pred ccccHHHHHHHHHHhc-CchhHHHHHHHhHHhHHhhcchhhhhheeEE-ccCchHHHHHHHhhCcchHHHHHHHHhChhh
Confidence 9999999999999864 6778888999999999999999999999999 9999999999999999999999999998544
Q ss_pred hHHH---HHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
Q 000731 1108 LITK---VKHAS-----LECASSLIGEYKEGLEKVGKYLT 1139 (1325)
Q Consensus 1108 L~e~---v~~~l-----~e~~~~~~e~l~~~~~~~~k~~~ 1139 (1325)
+-++ ....+ +.+++.+.-...+++..++.|+.
T Consensus 881 l~dt~~~f~~e~e~~g~lkaae~~flea~d~kaavnmyk~ 920 (1636)
T KOG3616|consen 881 LHDTHKHFAKELEAEGDLKAAEEHFLEAGDFKAAVNMYKA 920 (1636)
T ss_pred hhHHHHHHHHHHHhccChhHHHHHHHhhhhHHHHHHHhhh
Confidence 4455 33333 45677777788999999999975
No 94
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.70 E-value=2.4e-12 Score=167.83 Aligned_cols=291 Identities=19% Similarity=0.232 Sum_probs=170.0
Q ss_pred CCEEEEEEccCCCEEEEEECCCcE----EEEeCC-CCeEEEece--------ecCcEEEEEEcCCCCeEEEEeCCccEEE
Q 000731 76 DSITAFDYLMEKEALIVGTSSGLL----LLHSVD-GNATEVVGR--------VEGGVRFISPSPDGDLLGVTTGFGQILV 142 (1325)
Q Consensus 76 ~~V~~v~~spdg~~La~as~dG~I----~lw~~~-~~~~e~vg~--------~~~~I~~~awSPDG~~LA~~s~dgtV~l 142 (1325)
..+...+|.++...+.++.....+ .+.... +...+.+-. -.+.|.++.+=+|.+.|..+..+|.|.+
T Consensus 22 ~~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~ 101 (928)
T PF04762_consen 22 LPITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSESLCIALASGDIIL 101 (928)
T ss_pred cccceEEEecCCCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCCcEEEEECCceEEE
Confidence 357778888877766555544433 222111 111121111 1356999999999999999999999987
Q ss_pred EeecCce---eeeeeccccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECC---------
Q 000731 143 MTHDWDL---LYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERD--------- 210 (1325)
Q Consensus 143 ~s~~~d~---~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~--------- 210 (1325)
...+-++ ..|.-. .-+++|.+++||||++.+| +.+ +++++-+-+++
T Consensus 102 ~~~~~~~~~~~~E~VG---------------~vd~GI~a~~WSPD~Ella-~vT------~~~~l~~mt~~fd~i~E~~l 159 (928)
T PF04762_consen 102 VREDPDPDEDEIEIVG---------------SVDSGILAASWSPDEELLA-LVT------GEGNLLLMTRDFDPISEVPL 159 (928)
T ss_pred EEccCCCCCceeEEEE---------------EEcCcEEEEEECCCcCEEE-EEe------CCCEEEEEeccceEEEEeec
Confidence 6322111 111110 1246899999999999999 553 23454443330
Q ss_pred ----CCc--eeee--------e-------------c---C--------CCCceeEEEEccCCCeEEEEecCCCCCCCCeE
Q 000731 211 ----SGT--LQAS--------S-------------E---L--------KAFMGAVLEWMPSGANIAAVYDRKSENKCPSI 252 (1325)
Q Consensus 211 ----~G~--l~~t--------~-------------e---~--------~~~~v~~lawsPdG~~IAs~~~d~~~~~~~~V 252 (1325)
-|+ ..+. + + + .+..-..|+|+.||+++|+.+-++..+....|
T Consensus 160 ~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~i 239 (928)
T PF04762_consen 160 DSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVI 239 (928)
T ss_pred CccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEE
Confidence 011 0000 0 0 0 12233689999999999999875432235789
Q ss_pred EEEeCCCceEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeEEEeEEEEecCC-c-EEEEEccC
Q 000731 253 VFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRD-G-IRFMWHPT 330 (1325)
Q Consensus 253 ~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~n~~wylkqel~~~~~~-~-~~v~Wsp~ 330 (1325)
++|+|+|..+..- ++-.+--..|+|-|.|.++|+.-.-.+.+.|-+|..++.+. -..++++.+.+ . ..+.|+++
T Consensus 240 RVy~ReG~L~stS---E~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrh-geF~l~~~~~~~~v~~l~Wn~d 315 (928)
T PF04762_consen 240 RVYSREGELQSTS---EPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRH-GEFTLRFDPEEEKVIELAWNSD 315 (928)
T ss_pred EEECCCceEEecc---ccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEe-eeEecCCCCCCceeeEEEECCC
Confidence 9999999765521 12122344799999999999988744445788888776432 11233332222 2 67889888
Q ss_pred CCcEEEEEecCCcEEEEEEEEeeeeCCCeeEEEEeCCEEEEeecCCcCCCCCceeeeecC--CCCEEEEEEecCCCCCEE
Q 000731 331 KPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKF--PTAVTEMAFYSKSSKNCL 408 (1325)
Q Consensus 331 ~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDG~~l~lt~l~~~~vPpPm~~~~l~~--~~~V~~VaFSpdg~~~~L 408 (1325)
+.. |+++..+. +. .|.+. + - =|-++ +++.+ ...+..+.|+|... ..|
T Consensus 316 s~i-LAv~~~~~-vq----LWt~~--N--------Y----HWYLK----------qei~~~~~~~~~~~~Wdpe~p-~~L 364 (928)
T PF04762_consen 316 SEI-LAVWLEDR-VQ----LWTRS--N--------Y----HWYLK----------QEIRFSSSESVNFVKWDPEKP-LRL 364 (928)
T ss_pred CCE-EEEEecCC-ce----EEEee--C--------C----EEEEE----------EEEEccCCCCCCceEECCCCC-CEE
Confidence 765 66665432 21 23221 0 0 01111 11222 22344588999753 778
Q ss_pred EEEECCCcEEEEeCC
Q 000731 409 AAILSDGCLCVVDLP 423 (1325)
Q Consensus 409 As~s~Dgti~lw~~~ 423 (1325)
.+++.+|.+..+++.
T Consensus 365 ~v~t~~g~~~~~~~~ 379 (928)
T PF04762_consen 365 HVLTSNGQYEIYDFA 379 (928)
T ss_pred EEEecCCcEEEEEEE
Confidence 899888888777663
No 95
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.70 E-value=1.5e-13 Score=165.55 Aligned_cols=395 Identities=13% Similarity=0.140 Sum_probs=250.9
Q ss_pred CCCEEEEEEccC-CCEEEEEECCCcEEEEeCCCCeE-EEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCce-ee
Q 000731 75 GDSITAFDYLME-KEALIVGTSSGLLLLHSVDGNAT-EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDL-LY 151 (1325)
Q Consensus 75 ~~~V~~v~~spd-g~~La~as~dG~I~lw~~~~~~~-e~vg~~~~~I~~~awSPDG~~LA~~s~dgtV~l~s~~~d~-~~ 151 (1325)
++.|+++.+-+. -+.+++|+..|.++|||+.++++ -...++.++|+++.=||-=..+|+|..+|+|.+.+--+|. +.
T Consensus 159 ~~~Ital~HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~ 238 (910)
T KOG1539|consen 159 GDFITALLHPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILM 238 (910)
T ss_pred CCceeeEecchhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEE
Confidence 345888854332 26788999999999999998764 4566678999999999999999999999999998744443 33
Q ss_pred eeeccccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeec-CCCCceeEEEE
Q 000731 152 ENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSE-LKAFMGAVLEW 230 (1325)
Q Consensus 152 e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e-~~~~~v~~law 230 (1325)
+.. ...+.|.+++||-||..+.+++ ...|.+-+||.+.-+++.... .|.+.+....|
T Consensus 239 sFk----------------~d~g~VtslSFrtDG~p~las~------~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~f 296 (910)
T KOG1539|consen 239 SFK----------------QDWGRVTSLSFRTDGNPLLASG------RSNGDMAFWDLEKKKLINVTRNAHYGSVTGATF 296 (910)
T ss_pred EEE----------------ccccceeEEEeccCCCeeEEec------cCCceEEEEEcCCCeeeeeeeccccCCccccee
Confidence 222 1126789999999999776244 234789999996666666655 57788888888
Q ss_pred ccCCCeEEEEecCCCCCCCCeEEEEeC-CCceEEEEEeccCCCCcEEEEEEc-cCCCeeEEEEccCC-------------
Q 000731 231 MPSGANIAAVYDRKSENKCPSIVFYER-NGLERSSFDINEQIDSTVELLKWN-CMSDLLAAVVRFEE------------- 295 (1325)
Q Consensus 231 sPdG~~IAs~~~d~~~~~~~~V~~~e~-nGl~~~~f~l~~~~~~~V~~laWS-pDg~~LAs~~~d~~------------- 295 (1325)
-|.--.+.+++.|+ ...+.+||. +|- -+....+..|..+...|.|- .+|..+-+++.|+.
T Consensus 297 l~~epVl~ta~~Dn----Slk~~vfD~~dg~-pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~ 371 (910)
T KOG1539|consen 297 LPGEPVLVTAGADN----SLKVWVFDSGDGV-PRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQ 371 (910)
T ss_pred cCCCceEeeccCCC----ceeEEEeeCCCCc-chheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhH
Confidence 88888888887763 233334441 110 00001111111222222222 22222222222220
Q ss_pred -------------------------------------------------CCeEEEEEeeCC---eeEEEeEEEEecC--C
Q 000731 296 -------------------------------------------------YDSVKICFFSNN---HWYLKYEIRYLRR--D 321 (1325)
Q Consensus 296 -------------------------------------------------~~~VqLW~~~n~---~wylkqel~~~~~--~ 321 (1325)
....+-|++.|. .|.|+.. ++... .
T Consensus 372 ~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~-~~~~~~~~ 450 (910)
T KOG1539|consen 372 ELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPK-RFKKDDIN 450 (910)
T ss_pred hhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCc-cccccCcc
Confidence 004556666542 2333211 00001 1
Q ss_pred cEEEEEccCCCcEEEEEecCCcEEEEEEEEeee------------------eCCCe--eEEEEeCCEEEEeecCCcCCCC
Q 000731 322 GIRFMWHPTKPLQLICWTLDGQITTYNFIWTTA------------------VMENS--TALVIDGSKILVTPLSLSLMPP 381 (1325)
Q Consensus 322 ~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~------------------~~d~~--~v~viDG~~l~lt~l~~~~vPp 381 (1325)
..++.-++-|.. ..+++..|.+..++..-.+. .++.. +++..-.+.++.|+|+....
T Consensus 451 ~~av~vs~CGNF-~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l-- 527 (910)
T KOG1539|consen 451 ATAVCVSFCGNF-VFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVL-- 527 (910)
T ss_pred eEEEEEeccCce-EEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcce--
Confidence 255555555544 34555567666554322111 12222 33333344689999987652
Q ss_pred CceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccccccCCceeEeeeccccccCcEEEEEEecCCeE
Q 000731 382 PMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLL 461 (1325)
Q Consensus 382 Pm~~~~l~~~~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~l 461 (1325)
..++.....+..+..+... ..+|++..|-.|.++|..+.....++.| |.+.+..++|||||+.
T Consensus 528 ---~~~l~l~~~~~~iv~hr~s--~l~a~~~ddf~I~vvD~~t~kvvR~f~g------------h~nritd~~FS~DgrW 590 (910)
T KOG1539|consen 528 ---KKSLRLGSSITGIVYHRVS--DLLAIALDDFSIRVVDVVTRKVVREFWG------------HGNRITDMTFSPDGRW 590 (910)
T ss_pred ---eeeeccCCCcceeeeeehh--hhhhhhcCceeEEEEEchhhhhhHHhhc------------cccceeeeEeCCCCcE
Confidence 2355667778888888877 7899999999999999986544444444 4578999999999999
Q ss_pred EEEEecCCCCceEEEEeecccCccccchhhhhhhhcccccccccccccccceeeeeecccCCcEEEEeeCCCCCceEEEE
Q 000731 462 LSVSHHGPRHSNYFRGATLNEDGLLGFYAQEIELACSEDHVQGLLTCAGWHAKVSTQIPLEGLVIAIAPNNAKKYSAFLQ 541 (1325)
Q Consensus 462 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~q 541 (1325)
|++++-+ +++..|++.. | ....-..++.+.+++++|| .++.++..
T Consensus 591 lisasmD--~tIr~wDlpt-~-------------------------------~lID~~~vd~~~~sls~SP-ngD~LAT~ 635 (910)
T KOG1539|consen 591 LISASMD--STIRTWDLPT-G-------------------------------TLIDGLLVDSPCTSLSFSP-NGDFLATV 635 (910)
T ss_pred EEEeecC--CcEEEEeccC-c-------------------------------ceeeeEecCCcceeeEECC-CCCEEEEE
Confidence 9998765 6888998732 1 1223455688899999999 89999877
Q ss_pred eeC-CeEEEEec
Q 000731 542 FHG-GKISEYMS 552 (1325)
Q Consensus 542 ~~d-G~v~~~~~ 552 (1325)
-.| .-||.|..
T Consensus 636 Hvd~~gIylWsN 647 (910)
T KOG1539|consen 636 HVDQNGIYLWSN 647 (910)
T ss_pred EecCceEEEEEc
Confidence 776 67888843
No 96
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.70 E-value=2.7e-15 Score=171.98 Aligned_cols=278 Identities=16% Similarity=0.144 Sum_probs=199.0
Q ss_pred CCEEEEEEccCCCE-EEEEECCCcEEEEeCCCCeE-EEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeee
Q 000731 76 DSITAFDYLMEKEA-LIVGTSSGLLLLHSVDGNAT-EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYEN 153 (1325)
Q Consensus 76 ~~V~~v~~spdg~~-La~as~dG~I~lw~~~~~~~-e~vg~~~~~I~~~awSPDG~~LA~~s~dgtV~l~s~~~d~~~e~ 153 (1325)
+.|.+++|+|.... +|++ .+-.+.||+..+... .....+...|.++.|=.||++||.|...|.|++. |.-+..
T Consensus 27 ~~vssl~fsp~~P~d~aVt-~S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vf----D~k~r~ 101 (487)
T KOG0310|consen 27 NSVSSLCFSPKHPYDFAVT-SSVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVF----DMKSRV 101 (487)
T ss_pred CcceeEecCCCCCCceEEe-cccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEe----ccccHH
Confidence 68999999996543 4443 456799999887543 3566788999999999999999999999999874 421111
Q ss_pred eccccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeecCCCCceeEEEEccC
Q 000731 154 PLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPS 233 (1325)
Q Consensus 154 ~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~~~v~~lawsPd 233 (1325)
.+. ++++|...+..+.|+|++...+ +++ +.|+.+++||..++..+....+|...|.+.+|+|-
T Consensus 102 iLR-----------~~~ah~apv~~~~f~~~d~t~l-~s~-----sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~ 164 (487)
T KOG0310|consen 102 ILR-----------QLYAHQAPVHVTKFSPQDNTML-VSG-----SDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPA 164 (487)
T ss_pred HHH-----------HHhhccCceeEEEecccCCeEE-Eec-----CCCceEEEEEcCCcEEEEEecCCcceeEeeccccC
Confidence 222 3446677789999999887766 443 34689999999788776678889999999999997
Q ss_pred C-CeEEEEecCCCCCCCCeEEEEeCCCceEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeEEE
Q 000731 234 G-ANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLK 312 (1325)
Q Consensus 234 G-~~IAs~~~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~n~~wylk 312 (1325)
. .+++||+.| +.|++||.--.. .......++..|.++.+=|.|+++|+++.+. |++||+..+.-.+
T Consensus 165 ~~hivvtGsYD------g~vrl~DtR~~~--~~v~elnhg~pVe~vl~lpsgs~iasAgGn~----vkVWDl~~G~qll- 231 (487)
T KOG0310|consen 165 NDHIVVTGSYD------GKVRLWDTRSLT--SRVVELNHGCPVESVLALPSGSLIASAGGNS----VKVWDLTTGGQLL- 231 (487)
T ss_pred CCeEEEecCCC------ceEEEEEeccCC--ceeEEecCCCceeeEEEcCCCCEEEEcCCCe----EEEEEecCCceeh-
Confidence 4 578888885 689999953221 1122223456899999999999999998765 9999987443211
Q ss_pred eEEEEecCCcEEEEEccCCCcEEEEEecCCcEEEEEEEEeeeeCCCeeEEEEeCCEEEEeecCCcCCCCCceeeeecCCC
Q 000731 313 YEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPT 392 (1325)
Q Consensus 313 qel~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDG~~l~lt~l~~~~vPpPm~~~~l~~~~ 392 (1325)
....-|.+..+++....++ .+|..+..||.+.+++ ++ + -+. .+.+..++
T Consensus 232 ~~~~~H~KtVTcL~l~s~~-~rLlS~sLD~~VKVfd----~t--~--------~Kv----------------v~s~~~~~ 280 (487)
T KOG0310|consen 232 TSMFNHNKTVTCLRLASDS-TRLLSGSLDRHVKVFD----TT--N--------YKV----------------VHSWKYPG 280 (487)
T ss_pred hhhhcccceEEEEEeecCC-ceEeecccccceEEEE----cc--c--------eEE----------------EEeeeccc
Confidence 1111133445777777765 4566766677665433 11 0 001 12345688
Q ss_pred CEEEEEEecCCCCCEEEEEECCCcEEEEe
Q 000731 393 AVTEMAFYSKSSKNCLAAILSDGCLCVVD 421 (1325)
Q Consensus 393 ~V~~VaFSpdg~~~~LAs~s~Dgti~lw~ 421 (1325)
+|.+++.||++ +.+++|.+||.+.+-+
T Consensus 281 pvLsiavs~dd--~t~viGmsnGlv~~rr 307 (487)
T KOG0310|consen 281 PVLSIAVSPDD--QTVVIGMSNGLVSIRR 307 (487)
T ss_pred ceeeEEecCCC--ceEEEecccceeeeeh
Confidence 99999999999 8999999999887653
No 97
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.70 E-value=3.2e-16 Score=175.96 Aligned_cols=276 Identities=13% Similarity=0.189 Sum_probs=199.6
Q ss_pred CCCEEEEEEccCCCEEEEEECCCcEEEEeCCCCeEEEecee---cCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceee
Q 000731 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATEVVGRV---EGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLY 151 (1325)
Q Consensus 75 ~~~V~~v~~spdg~~La~as~dG~I~lw~~~~~~~e~vg~~---~~~I~~~awSPDG~~LA~~s~dgtV~l~s~~~d~~~ 151 (1325)
.+.+.++.|.++...|++|+.|..|++|+..+.+.+..+.. -++|+++.|.||+..+..+|.|+++.+|+-+ .
T Consensus 175 ~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd----~ 250 (459)
T KOG0288|consen 175 EGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVD----S 250 (459)
T ss_pred ccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeecc----c
Confidence 57899999999999999999999999999998775533322 4669999999999999999999999888642 2
Q ss_pred eeeccccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeecCCCCceeEEEEc
Q 000731 152 ENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWM 231 (1325)
Q Consensus 152 e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~~~v~~laws 231 (1325)
....+ ++.+|.+.++++.|.-....++ +++ .|++||+||...+.+..+.-+.. ....|.-+
T Consensus 251 ~r~~~-----------TLsGHtdkVt~ak~~~~~~~vV-sgs------~DRtiK~WDl~k~~C~kt~l~~S-~cnDI~~~ 311 (459)
T KOG0288|consen 251 LRLRH-----------TLSGHTDKVTAAKFKLSHSRVV-SGS------ADRTIKLWDLQKAYCSKTVLPGS-QCNDIVCS 311 (459)
T ss_pred hhhhh-----------hhcccccceeeehhhcccccee-ecc------ccchhhhhhhhhhheeccccccc-cccceEec
Confidence 22223 2337888899999887766544 443 46999999997777766643322 23555555
Q ss_pred cCCCeEEEEecCCCCCCCCeEEEEe-CCCceEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeE
Q 000731 232 PSGANIAAVYDRKSENKCPSIVFYE-RNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWY 310 (1325)
Q Consensus 232 PdG~~IAs~~~d~~~~~~~~V~~~e-~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~n~~wy 310 (1325)
+..+.|+-.| .+|+||+ +.+....+ .+ ..+.|.+|..|+||.-|.+.+.|. ++.+.|+.++.
T Consensus 312 --~~~~~SgH~D------kkvRfwD~Rs~~~~~s--v~--~gg~vtSl~ls~~g~~lLsssRDd---tl~viDlRt~e-- 374 (459)
T KOG0288|consen 312 --ISDVISGHFD------KKVRFWDIRSADKTRS--VP--LGGRVTSLDLSMDGLELLSSSRDD---TLKVIDLRTKE-- 374 (459)
T ss_pred --ceeeeecccc------cceEEEeccCCceeeE--ee--cCcceeeEeeccCCeEEeeecCCC---ceeeeeccccc--
Confidence 5667787775 4599999 65544332 33 345899999999999998888887 99999998864
Q ss_pred EEeEEEEec----CCcEEEEEccCCCcEEEEEecCCcEEEEEEEEeeeeCCCeeEEEEeCCEEEEeecCCcCCCCCceee
Q 000731 311 LKYEIRYLR----RDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLF 386 (1325)
Q Consensus 311 lkqel~~~~----~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDG~~l~lt~l~~~~vPpPm~~~ 386 (1325)
..+.+.... .+.+.+.|||++.+ +..++.+|.+ ++|++. .|+..++-.
T Consensus 375 I~~~~sA~g~k~asDwtrvvfSpd~~Y-vaAGS~dgsv----~iW~v~----------tgKlE~~l~------------- 426 (459)
T KOG0288|consen 375 IRQTFSAEGFKCASDWTRVVFSPDGSY-VAAGSADGSV----YIWSVF----------TGKLEKVLS------------- 426 (459)
T ss_pred EEEEeeccccccccccceeEECCCCce-eeeccCCCcE----EEEEcc----------CceEEEEec-------------
Confidence 234443221 23367899999887 6677777776 467654 121111100
Q ss_pred eecC-CCCEEEEEEecCCCCCEEEEEECCCcEEEEe
Q 000731 387 SLKF-PTAVTEMAFYSKSSKNCLAAILSDGCLCVVD 421 (1325)
Q Consensus 387 ~l~~-~~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~ 421 (1325)
..+ +..|.+++|+|.| ..|++++.++.+.+|.
T Consensus 427 -~s~s~~aI~s~~W~~sG--~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 427 -LSTSNAAITSLSWNPSG--SGLLSADKQKAVTLWT 459 (459)
T ss_pred -cCCCCcceEEEEEcCCC--chhhcccCCcceEecC
Confidence 111 2269999999999 8999999999999994
No 98
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=4.6e-15 Score=161.68 Aligned_cols=261 Identities=17% Similarity=0.088 Sum_probs=170.7
Q ss_pred eceecCcEEEEEEcCCCCeEEEEeCCccEEEEe-ecCceeeeeeccccCCCceeccCccccCCCCeEEEEEecCCcEEEE
Q 000731 112 VGRVEGGVRFISPSPDGDLLGVTTGFGQILVMT-HDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFAT 190 (1325)
Q Consensus 112 vg~~~~~I~~~awSPDG~~LA~~s~dgtV~l~s-~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAt 190 (1325)
+..|.+.|++++||.||+.||++++|++|++|+ ++|......++...- ..+.-+.+.|+||.+-|+
T Consensus 82 LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nv------------e~dhpT~V~FapDc~s~v- 148 (420)
T KOG2096|consen 82 LKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNV------------EYDHPTRVVFAPDCKSVV- 148 (420)
T ss_pred hhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccc------------cCCCceEEEECCCcceEE-
Confidence 445789999999999999999999999999996 666543222222211 112447899999999887
Q ss_pred eeccccccCCCCEEEEEEC---CCCceeeeecC---------CCCceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeCC
Q 000731 191 LSEFCNSSKLHKRLKVWER---DSGTLQASSEL---------KAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERN 258 (1325)
Q Consensus 191 vss~d~~~~~d~~irVWd~---~~G~l~~t~e~---------~~~~v~~lawsPdG~~IAs~~~d~~~~~~~~V~~~e~n 258 (1325)
++-.. ..+++||-. .+|.....+-+ |.-.+.++...-.+.+|+|++.| .+|.+|+..
T Consensus 149 v~~~~-----g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~d------t~i~lw~lk 217 (420)
T KOG2096|consen 149 VSVKR-----GNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLD------TKICLWDLK 217 (420)
T ss_pred EEEcc-----CCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCC------CcEEEEecC
Confidence 65432 368888854 34544333322 33345667777888999999986 469999987
Q ss_pred CceEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeEEEeEEEEecCCcEEEEEccCCCcEEEEE
Q 000731 259 GLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICW 338 (1325)
Q Consensus 259 Gl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~n~~wylkqel~~~~~~~~~v~Wsp~~~~~L~~~ 338 (1325)
|...+..... ...-...+-||||+.||+++-.- -|++|..- |
T Consensus 218 Gq~L~~idtn---q~~n~~aavSP~GRFia~~gFTp---DVkVwE~~-----------f--------------------- 259 (420)
T KOG2096|consen 218 GQLLQSIDTN---QSSNYDAAVSPDGRFIAVSGFTP---DVKVWEPI-----------F--------------------- 259 (420)
T ss_pred Cceeeeeccc---cccccceeeCCCCcEEEEecCCC---CceEEEEE-----------e---------------------
Confidence 7665533221 22345678999999999988765 58877531 1
Q ss_pred ecCCcEEEEEEEEeeeeCCCeeEEEEeCCEEEEeecCCcCCCCCceeeee-cCCCCEEEEEEecCCCCCEEEEEECCCcE
Q 000731 339 TLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSL-KFPTAVTEMAFYSKSSKNCLAAILSDGCL 417 (1325)
Q Consensus 339 ~~~g~~~~~~~~~~~~~~d~~~v~viDG~~l~lt~l~~~~vPpPm~~~~l-~~~~~V~~VaFSpdg~~~~LAs~s~Dgti 417 (1325)
+.+|++....- .++| .|.+.|...+||++. .++++++.||++
T Consensus 260 ~kdG~fqev~r-----------------------------------vf~LkGH~saV~~~aFsn~S--~r~vtvSkDG~w 302 (420)
T KOG2096|consen 260 TKDGTFQEVKR-----------------------------------VFSLKGHQSAVLAAAFSNSS--TRAVTVSKDGKW 302 (420)
T ss_pred ccCcchhhhhh-----------------------------------hheeccchhheeeeeeCCCc--ceeEEEecCCcE
Confidence 12333211000 0123 478899999999999 899999999999
Q ss_pred EEEeCCCCCccccccCCceeEeeec--c-ccccCcEEEEEEecCCeEEEEEecCCCCceEEEEe
Q 000731 418 CVVDLPAPDMLEDLEGTEFVVEACI--S-ETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGA 478 (1325)
Q Consensus 418 ~lw~~~~~~~~~~~~g~~~~~~~~~--~-~~~~~~v~~l~~~~d~~lla~~~~~~~~~~~~~~~ 478 (1325)
++|+.+-.-. .|...+++... + .........+..+|+|..||+++. +++.++..
T Consensus 303 riwdtdVrY~----~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~g---s~l~~~~s 359 (420)
T KOG2096|consen 303 RIWDTDVRYE----AGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFG---SDLKVFAS 359 (420)
T ss_pred EEeeccceEe----cCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecC---CceEEEEc
Confidence 9999864211 11111211111 0 011123447899999999998775 35555543
No 99
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.68 E-value=1e-14 Score=153.56 Aligned_cols=240 Identities=15% Similarity=0.180 Sum_probs=167.7
Q ss_pred CCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeecCCCCceeEEEEccCCCeEEEEecCCCCCCCCe
Q 000731 172 SFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPS 251 (1325)
Q Consensus 172 ~~~~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~~~v~~lawsPdG~~IAs~~~d~~~~~~~~ 251 (1325)
+.+.|..+.|+.||+|..|++ .+++||+||+-.|.++.+..+|..-|-.++-+-|...+|+++.| ..
T Consensus 16 ~qgaV~avryN~dGnY~ltcG-------sdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgD------k~ 82 (307)
T KOG0316|consen 16 AQGAVRAVRYNVDGNYCLTCG-------SDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGD------KA 82 (307)
T ss_pred cccceEEEEEccCCCEEEEcC-------CCceEEeecccccceeeeecCCCceeeeccccccccccccCCCC------ce
Confidence 446789999999999988564 47999999999999999999999999999999999999999986 46
Q ss_pred EEEEeCC-CceEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeEEEeEEEEecCCcEEEEEccC
Q 000731 252 IVFYERN-GLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPT 330 (1325)
Q Consensus 252 V~~~e~n-Gl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~n~~wylkqel~~~~~~~~~v~Wsp~ 330 (1325)
|.+||.| |...+.| ++| .+.|+.++||.++.++++++-|. ++|+||......
T Consensus 83 v~vwDV~TGkv~Rr~--rgH-~aqVNtV~fNeesSVv~SgsfD~---s~r~wDCRS~s~--------------------- 135 (307)
T KOG0316|consen 83 VQVWDVNTGKVDRRF--RGH-LAQVNTVRFNEESSVVASGSFDS---SVRLWDCRSRSF--------------------- 135 (307)
T ss_pred EEEEEcccCeeeeec--ccc-cceeeEEEecCcceEEEeccccc---eeEEEEcccCCC---------------------
Confidence 9999965 5444433 333 57899999999999999999999 999999864211
Q ss_pred CCcEEEEEecCCcEEEEEEEEeeeeCCCeeEEEEeCCEEEEeecCCcCCCCCceeeeecCCCCEEEEEEecCCCCCEEEE
Q 000731 331 KPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAA 410 (1325)
Q Consensus 331 ~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDG~~l~lt~l~~~~vPpPm~~~~l~~~~~V~~VaFSpdg~~~~LAs 410 (1325)
.|.++.--..|| +-++...+.-+++-.-+.+++..+++...+ |+. -+..+|++|.||+|| +...+
T Consensus 136 ePiQildea~D~-------V~Si~v~~heIvaGS~DGtvRtydiR~G~l---~sD---y~g~pit~vs~s~d~--nc~La 200 (307)
T KOG0316|consen 136 EPIQILDEAKDG-------VSSIDVAEHEIVAGSVDGTVRTYDIRKGTL---SSD---YFGHPITSVSFSKDG--NCSLA 200 (307)
T ss_pred CccchhhhhcCc-------eeEEEecccEEEeeccCCcEEEEEeeccee---ehh---hcCCcceeEEecCCC--CEEEE
Confidence 111110000122 112222233344433333566666665432 111 256799999999999 88888
Q ss_pred EECCCcEEEEeCCCCCccccccCCceeEeeeccccccCcEEEEEEecCCeEEEEEecCCCCceEEEEe
Q 000731 411 ILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGA 478 (1325)
Q Consensus 411 ~s~Dgti~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~~~~~~~~~~~ 478 (1325)
++-|++|+|-|.++...++...|+.-. .-.+ .-++.+..+.+++++.+ ..+.+|.+
T Consensus 201 ~~l~stlrLlDk~tGklL~sYkGhkn~---------eykl-dc~l~qsdthV~sgSED--G~Vy~wdL 256 (307)
T KOG0316|consen 201 SSLDSTLRLLDKETGKLLKSYKGHKNM---------EYKL-DCCLNQSDTHVFSGSED--GKVYFWDL 256 (307)
T ss_pred eeccceeeecccchhHHHHHhcccccc---------eeee-eeeecccceeEEeccCC--ceEEEEEe
Confidence 889999999999887777666664211 0011 12345556667766654 57888887
No 100
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=7.1e-15 Score=167.21 Aligned_cols=230 Identities=15% Similarity=0.166 Sum_probs=166.1
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCC-EEEEEECCCcEE
Q 000731 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKE-ALIVGTSSGLLL 100 (1325)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~V~~v~~spdg~-~La~as~dG~I~ 100 (1325)
.++++.|-+-.-.|.+|.-|+.+..+++..-.+.. +..+. |. ...|....|+|+|+ .+++++...-..
T Consensus 215 ~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~---lqS~~--l~------~fPi~~a~f~p~G~~~i~~s~rrky~y 283 (514)
T KOG2055|consen 215 GITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPK---LQSIH--LE------KFPIQKAEFAPNGHSVIFTSGRRKYLY 283 (514)
T ss_pred CceEEEecCCCceEEEecCCCcEEEEEecCccChh---heeee--ec------cCccceeeecCCCceEEEecccceEEE
Confidence 78888999988999999888865555552133332 22111 33 33688999999999 888888888888
Q ss_pred EEeCCCCeEE----EeceecCcEEEEEEcCCCCeEEEEeCCccEEEEe-ecCceeeeeeccccCCCceeccCccccCCCC
Q 000731 101 LHSVDGNATE----VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMT-HDWDLLYENPLEELAEGFDVHEPELSSSFSF 175 (1325)
Q Consensus 101 lw~~~~~~~e----~vg~~~~~I~~~awSPDG~~LA~~s~dgtV~l~s-~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~ 175 (1325)
.||+.+.++. ..|.-...+.....||||.+||+++..|-|.+.. +..+.+....+. +.
T Consensus 284 syDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~Kie-----------------G~ 346 (514)
T KOG2055|consen 284 SYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIE-----------------GV 346 (514)
T ss_pred EeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeec-----------------cE
Confidence 9999987654 2333345688899999999999999999998864 344444444332 45
Q ss_pred eEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeecCCCC-ceeEEEEccCCCeEEEEecCCCCCCCCeEEE
Q 000731 176 KSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAF-MGAVLEWMPSGANIAAVYDRKSENKCPSIVF 254 (1325)
Q Consensus 176 i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~~-~v~~lawsPdG~~IAs~~~d~~~~~~~~V~~ 254 (1325)
+..+.|+.||+.|. ++ ++++.|.|||.+.-.++..+.-..+ ...+++-|++|.++|+|+. .+.|-+
T Consensus 347 v~~~~fsSdsk~l~-~~------~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~------~GiVNI 413 (514)
T KOG2055|consen 347 VSDFTFSSDSKELL-AS------GGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSD------SGIVNI 413 (514)
T ss_pred EeeEEEecCCcEEE-EE------cCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccC------cceEEE
Confidence 68999999999887 44 2457999999977777777642111 2368888999999999997 577889
Q ss_pred EeCCCceEEEEEeccC------CCCcEEEEEEccCCCeeEEEEccC
Q 000731 255 YERNGLERSSFDINEQ------IDSTVELLKWNCMSDLLAAVVRFE 294 (1325)
Q Consensus 255 ~e~nGl~~~~f~l~~~------~~~~V~~laWSpDg~~LAs~~~d~ 294 (1325)
|+.|.-..+. -|.| -...|.+|+||||+++||+++.-.
T Consensus 414 Yd~~s~~~s~--~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~ 457 (514)
T KOG2055|consen 414 YDGNSCFAST--NPKPIKTVDNLTTAITSLQFNHDAQILAIASRVK 457 (514)
T ss_pred eccchhhccC--CCCchhhhhhhheeeeeeeeCcchhhhhhhhhcc
Confidence 9976433221 1111 134699999999999999998654
No 101
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.68 E-value=4.5e-15 Score=163.79 Aligned_cols=241 Identities=13% Similarity=0.090 Sum_probs=189.9
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEE
Q 000731 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1325)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~V~~v~~spdg~~La~as~dG~I~l 101 (1325)
++-++++||-+.-+.++|.|..|..||+ -+++. +. + |.+| -..|..+++|+--.+|.+++.|+.|+-
T Consensus 153 WVr~vavdP~n~wf~tgs~DrtikIwDl--atg~L--kl-t----ltGh----i~~vr~vavS~rHpYlFs~gedk~VKC 219 (460)
T KOG0285|consen 153 WVRSVAVDPGNEWFATGSADRTIKIWDL--ATGQL--KL-T----LTGH----IETVRGVAVSKRHPYLFSAGEDKQVKC 219 (460)
T ss_pred eEEEEeeCCCceeEEecCCCceeEEEEc--ccCeE--EE-e----ecch----hheeeeeeecccCceEEEecCCCeeEE
Confidence 7899999998777777888999999999 67764 22 2 4544 247999999999999999999999999
Q ss_pred EeCCCCeE-E-EeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeeeccccCCCceeccCccccCCCCeEEE
Q 000731 102 HSVDGNAT-E-VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPI 179 (1325)
Q Consensus 102 w~~~~~~~-e-~vg~~~~~I~~~awSPDG~~LA~~s~dgtV~l~s~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~i 179 (1325)
||+...++ . -.| |-.+|.|++.-|--..|++++.|.++++|+ ..+...++.. .+|+..|.++
T Consensus 220 wDLe~nkvIR~YhG-HlS~V~~L~lhPTldvl~t~grDst~RvWD----iRtr~~V~~l-----------~GH~~~V~~V 283 (460)
T KOG0285|consen 220 WDLEYNKVIRHYHG-HLSGVYCLDLHPTLDVLVTGGRDSTIRVWD----IRTRASVHVL-----------SGHTNPVASV 283 (460)
T ss_pred EechhhhhHHHhcc-ccceeEEEeccccceeEEecCCcceEEEee----ecccceEEEe-----------cCCCCcceeE
Confidence 99987664 3 455 478899999999999999999999998864 3333333332 2777888999
Q ss_pred EEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeecCCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeCCC
Q 000731 180 SWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNG 259 (1325)
Q Consensus 180 sWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~~~v~~lawsPdG~~IAs~~~d~~~~~~~~V~~~e~nG 259 (1325)
.+.|-.-.+. ++|. |.+||+||...|+...++..|...+.+++.+|.-+.+||++.| .|+-|.
T Consensus 284 ~~~~~dpqvi-t~S~------D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d-------nik~w~--- 346 (460)
T KOG0285|consen 284 MCQPTDPQVI-TGSH------DSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD-------NIKQWK--- 346 (460)
T ss_pred EeecCCCceE-EecC------CceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCc-------cceecc---
Confidence 9987443455 4544 5899999999999999999999999999999999999999875 477776
Q ss_pred ceEEEEEec-cCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeEEE
Q 000731 260 LERSSFDIN-EQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLK 312 (1325)
Q Consensus 260 l~~~~f~l~-~~~~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~n~~wylk 312 (1325)
+-+++|.-. ..+..-|+.|+-+.|| ++.+|+.++ ++.+||+...|-|..
T Consensus 347 ~p~g~f~~nlsgh~~iintl~~nsD~-v~~~G~dng---~~~fwdwksg~nyQ~ 396 (460)
T KOG0285|consen 347 LPEGEFLQNLSGHNAIINTLSVNSDG-VLVSGGDNG---SIMFWDWKSGHNYQR 396 (460)
T ss_pred CCccchhhccccccceeeeeeeccCc-eEEEcCCce---EEEEEecCcCccccc
Confidence 334555322 1234578999999999 566777777 899999998776643
No 102
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.68 E-value=1.1e-14 Score=181.25 Aligned_cols=291 Identities=16% Similarity=0.171 Sum_probs=191.1
Q ss_pred EEEEEcCCCC-eEEEEeCCccEEEEeecCcee-----eeeeccccC-CCceeccCccccCCCCeEEEEEecCCcE----E
Q 000731 120 RFISPSPDGD-LLGVTTGFGQILVMTHDWDLL-----YENPLEELA-EGFDVHEPELSSSFSFKSPISWRGDGKY----F 188 (1325)
Q Consensus 120 ~~~awSPDG~-~LA~~s~dgtV~l~s~~~d~~-----~e~~l~~~~-~~~~Vs~tqf~~~~~~i~~isWspDG~~----l 188 (1325)
...+|||++. +||+|+..+.+- ..|..- .+....... +-+++... ..+.+...++|.+-|.- |
T Consensus 10 a~~awSp~~~~~laagt~aq~~D---~sfst~~slEifeld~~~~~~dlk~~~s~---~s~~rF~kL~W~~~g~~~~GlI 83 (1049)
T KOG0307|consen 10 ATFAWSPASPPLLAAGTAAQQFD---ASFSTSASLEIFELDFSDESSDLKPVGSL---QSSNRFNKLAWGSYGSHSHGLI 83 (1049)
T ss_pred ceEEecCCCchhhHHHhhhhccc---cccccccccceeeecccCccccccccccc---cccccceeeeecccCCCcccee
Confidence 3568999998 778777665541 122111 111111110 12333110 12345689999988876 5
Q ss_pred EEeeccccccCCCCEEEEEECCC---C---ceeeeecCCCCceeEEEEccCCC-eEEEEecCCCCCCCCeEEEEeCCCce
Q 000731 189 ATLSEFCNSSKLHKRLKVWERDS---G---TLQASSELKAFMGAVLEWMPSGA-NIAAVYDRKSENKCPSIVFYERNGLE 261 (1325)
Q Consensus 189 Atvss~d~~~~~d~~irVWd~~~---G---~l~~t~e~~~~~v~~lawsPdG~-~IAs~~~d~~~~~~~~V~~~e~nGl~ 261 (1325)
| ++ ..||.|-+||... + .++.+...|.|.|..|.|+|.+. ++|||+.+ +.|.|||.|...
T Consensus 84 a--GG-----~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~------geI~iWDlnn~~ 150 (1049)
T KOG0307|consen 84 A--GG-----LEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADD------GEILIWDLNKPE 150 (1049)
T ss_pred e--cc-----ccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCC------CcEEEeccCCcC
Confidence 5 33 4579999999843 1 24455667999999999999765 99999875 679999988632
Q ss_pred EEEEEeccC-CCCcEEEEEEcc-CCCeeEEEEccCCCCeEEEEEeeCCeeEEEeEEEEecC--Cc--EEEEEccCCCcEE
Q 000731 262 RSSFDINEQ-IDSTVELLKWNC-MSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRR--DG--IRFMWHPTKPLQL 335 (1325)
Q Consensus 262 ~~~f~l~~~-~~~~V~~laWSp-Dg~~LAs~~~d~~~~~VqLW~~~n~~wylkqel~~~~~--~~--~~v~Wsp~~~~~L 335 (1325)
..|+.... ....|..|+||- ...+||+++.++ .+-|||+.... +.+.+... .. ..+.|||+...++
T Consensus 151 -tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg---~~~iWDlr~~~----pii~ls~~~~~~~~S~l~WhP~~aTql 222 (1049)
T KOG0307|consen 151 -TPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSG---RAVIWDLRKKK----PIIKLSDTPGRMHCSVLAWHPDHATQL 222 (1049)
T ss_pred -CCCCCCCCCCcccceEeccchhhhHHhhccCCCC---CceeccccCCC----cccccccCCCccceeeeeeCCCCceee
Confidence 22333211 235799999996 577999999997 79999998642 34444322 12 5789999998888
Q ss_pred EEEecCCcEEEEEEEEeeeeCCCeeEEEEeCCEEEEeecCCcCCCCCceeeee-cCCCCEEEEEEecCCCCCEEEEEECC
Q 000731 336 ICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSL-KFPTAVTEMAFYSKSSKNCLAAILSD 414 (1325)
Q Consensus 336 ~~~~~~g~~~~~~~~~~~~~~d~~~v~viDG~~l~lt~l~~~~vPpPm~~~~l-~~~~~V~~VaFSpdg~~~~LAs~s~D 414 (1325)
.+.+.|.. ...|++|++|-...|- +.+ .|..-|.+++|++.++ .+|++.+.|
T Consensus 223 ~~As~dd~----------------------~PviqlWDlR~assP~----k~~~~H~~GilslsWc~~D~-~lllSsgkD 275 (1049)
T KOG0307|consen 223 LVASGDDS----------------------APVIQLWDLRFASSPL----KILEGHQRGILSLSWCPQDP-RLLLSSGKD 275 (1049)
T ss_pred eeecCCCC----------------------CceeEeecccccCCch----hhhcccccceeeeccCCCCc-hhhhcccCC
Confidence 77765421 1347888888776653 344 4788899999999873 678899999
Q ss_pred CcEEEEeCCCCCccccccCCceeEeeeccccccCcEEEEEEecCCe-EEEEEecCCCCceEEEEe
Q 000731 415 GCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHL-LLSVSHHGPRHSNYFRGA 478 (1325)
Q Consensus 415 gti~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~-lla~~~~~~~~~~~~~~~ 478 (1325)
+.|.+|+..+.+.+.++. ...+++..+.|.|..- ++|+++-+ +.+-++.+
T Consensus 276 ~~ii~wN~~tgEvl~~~p------------~~~nW~fdv~w~pr~P~~~A~asfd--gkI~I~sl 326 (1049)
T KOG0307|consen 276 NRIICWNPNTGEVLGELP------------AQGNWCFDVQWCPRNPSVMAAASFD--GKISIYSL 326 (1049)
T ss_pred CCeeEecCCCceEeeecC------------CCCcceeeeeecCCCcchhhhheec--cceeeeee
Confidence 999999998754432221 1346888899988654 45444432 34444444
No 103
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.67 E-value=3.3e-15 Score=158.86 Aligned_cols=279 Identities=13% Similarity=0.110 Sum_probs=191.4
Q ss_pred EEEEEEcc--CCCEEEEE-------ECCCcEEEEeCC-CCeEEEece--ecCcEEEEEEcCCCC-eEEEEeCCccEEEEe
Q 000731 78 ITAFDYLM--EKEALIVG-------TSSGLLLLHSVD-GNATEVVGR--VEGGVRFISPSPDGD-LLGVTTGFGQILVMT 144 (1325)
Q Consensus 78 V~~v~~sp--dg~~La~a-------s~dG~I~lw~~~-~~~~e~vg~--~~~~I~~~awSPDG~-~LA~~s~dgtV~l~s 144 (1325)
=.+++||| ++ .||+| ..+|.+.|-+++ .+.+..+-+ ..+++..++||+.-+ .++++++||++++|+
T Consensus 11 GysvqfSPf~~n-rLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d 89 (311)
T KOG0277|consen 11 GYSVQFSPFVEN-RLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFD 89 (311)
T ss_pred cceeEecccccc-hhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEec
Confidence 35788888 33 34443 257889999885 333332222 368899999999865 566779999998875
Q ss_pred ecCceeeeeeccccCCCceeccCccccCCCCeEEEEEecC-CcEEEEeeccccccCCCCEEEEEECCCCceeeeecCCCC
Q 000731 145 HDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGD-GKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAF 223 (1325)
Q Consensus 145 ~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspD-G~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~~ 223 (1325)
. +..+.+++ .|+.|...|.++.|++- ++.|. +||. |++||+|+..-++.+.|+.+|..
T Consensus 90 ~---~~~s~Pi~-----------~~kEH~~EV~Svdwn~~~r~~~l-tsSW------D~TiKLW~~~r~~Sv~Tf~gh~~ 148 (311)
T KOG0277|consen 90 L---TMPSKPIH-----------KFKEHKREVYSVDWNTVRRRIFL-TSSW------DGTIKLWDPNRPNSVQTFNGHNS 148 (311)
T ss_pred c---CCCCcchh-----------HHHhhhhheEEeccccccceeEE-eecc------CCceEeecCCCCcceEeecCCcc
Confidence 1 22223332 35677788999999985 45566 5554 58999999988999999999999
Q ss_pred ceeEEEEcc-CCCeEEEEecCCCCCCCCeEEEEeCC--CceEEEEEeccCCCCcEEEEEEcc-CCCeeEEEEccCCCCeE
Q 000731 224 MGAVLEWMP-SGANIAAVYDRKSENKCPSIVFYERN--GLERSSFDINEQIDSTVELLKWNC-MSDLLAAVVRFEEYDSV 299 (1325)
Q Consensus 224 ~v~~lawsP-dG~~IAs~~~d~~~~~~~~V~~~e~n--Gl~~~~f~l~~~~~~~V~~laWSp-Dg~~LAs~~~d~~~~~V 299 (1325)
.|...+||| .++++|+++.| ...+|||.. |... .++.| ...+.+..||. |-.+||+++.|. .|
T Consensus 149 ~Iy~a~~sp~~~nlfas~Sgd------~~l~lwdvr~~gk~~---~i~ah-~~Eil~cdw~ky~~~vl~Tg~vd~---~v 215 (311)
T KOG0277|consen 149 CIYQAAFSPHIPNLFASASGD------GTLRLWDVRSPGKFM---SIEAH-NSEILCCDWSKYNHNVLATGGVDN---LV 215 (311)
T ss_pred EEEEEecCCCCCCeEEEccCC------ceEEEEEecCCCcee---EEEec-cceeEeecccccCCcEEEecCCCc---eE
Confidence 999999999 57899999986 569999932 3221 23333 35799999996 567899999998 99
Q ss_pred EEEEeeCCeeEEEeEEEEecCCcEEEEEccCCCcEEEEEecCCcEEEEEEEEeeeeCCCeeEEEEeCCEEEEeecCCcCC
Q 000731 300 KICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLM 379 (1325)
Q Consensus 300 qLW~~~n~~wylkqel~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDG~~l~lt~l~~~~v 379 (1325)
+.||+.|+.-- ..++..|.-....++|||-....|+..+-|- ++.+|++...
T Consensus 216 r~wDir~~r~p-l~eL~gh~~AVRkvk~Sph~~~lLaSasYDm-------------------------T~riw~~~~~-- 267 (311)
T KOG0277|consen 216 RGWDIRNLRTP-LFELNGHGLAVRKVKFSPHHASLLASASYDM-------------------------TVRIWDPERQ-- 267 (311)
T ss_pred EEEehhhcccc-ceeecCCceEEEEEecCcchhhHhhhccccc-------------------------eEEecccccc--
Confidence 99999986421 1344333222377888887765444433221 1223322110
Q ss_pred CCCceeeee-cCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeC
Q 000731 380 PPPMYLFSL-KFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDL 422 (1325)
Q Consensus 380 PpPm~~~~l-~~~~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~~ 422 (1325)
--+..+. .|..-|..+.||+-. ...+|+.+.|+.+.+|+.
T Consensus 268 --ds~~e~~~~HtEFv~g~Dws~~~-~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 268 --DSAIETVDHHTEFVCGLDWSLFD-PGQVASTGWDELLYVWNP 308 (311)
T ss_pred --hhhhhhhhccceEEecccccccc-Cceeeecccccceeeecc
Confidence 0011122 367788999999874 278999999999999985
No 104
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.67 E-value=4.5e-15 Score=172.66 Aligned_cols=307 Identities=15% Similarity=0.145 Sum_probs=201.7
Q ss_pred CCCEEEEEEccCCCEEEEEECCCcEEEEeCCCCeEEEeceecCcEEEEEEcCCCCe--EEEEeCCccEEEEeec-Ccee-
Q 000731 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATEVVGRVEGGVRFISPSPDGDL--LGVTTGFGQILVMTHD-WDLL- 150 (1325)
Q Consensus 75 ~~~V~~v~~spdg~~La~as~dG~I~lw~~~~~~~e~vg~~~~~I~~~awSPDG~~--LA~~s~dgtV~l~s~~-~d~~- 150 (1325)
.+.|++|.-.|-|+.||+|+.||+|++|.+.|+.+--.-..++.|.|++|+|.+.+ ||.+.+.. +.+.+.. ++-+
T Consensus 400 tg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~-~~ivnp~~G~~~e 478 (733)
T KOG0650|consen 400 TGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGEC-VLIVNPIFGDRLE 478 (733)
T ss_pred CCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCc-eEEeCccccchhh
Confidence 47899999999999999999999999999999876422235788999999999875 66666654 5444322 1111
Q ss_pred ---eeeeccccC-----CCceec-----cCccc-------cCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECC
Q 000731 151 ---YENPLEELA-----EGFDVH-----EPELS-------SSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERD 210 (1325)
Q Consensus 151 ---~e~~l~~~~-----~~~~Vs-----~tqf~-------~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~ 210 (1325)
+...+.... ..+.|. ..+.. .|...|.+++|.++|.|||||.. + ++.+.|-|.+..
T Consensus 479 ~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~-~---~~~~~VliHQLS 554 (733)
T KOG0650|consen 479 VGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMP-D---SGNKSVLIHQLS 554 (733)
T ss_pred hcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEecc-C---CCcceEEEEecc
Confidence 011111110 111121 00011 36678899999999999996543 2 456889999986
Q ss_pred CCceeeeecCCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeCCCceEEEEEec-cCCCCcEEEEEEccCCCeeEE
Q 000731 211 SGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDIN-EQIDSTVELLKWNCMSDLLAA 289 (1325)
Q Consensus 211 ~G~l~~t~e~~~~~v~~lawsPdG~~IAs~~~d~~~~~~~~V~~~e~nGl~~~~f~l~-~~~~~~V~~laWSpDg~~LAs 289 (1325)
.+..+.-+....|.+..+.|+|.-.++..++. ..|++|+.- .++.+-. .++..+|.+++.+|.|+-|..
T Consensus 555 K~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-------~~vRiYdL~---kqelvKkL~tg~kwiS~msihp~GDnli~ 624 (733)
T KOG0650|consen 555 KRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-------RSVRIYDLS---KQELVKKLLTGSKWISSMSIHPNGDNLIL 624 (733)
T ss_pred cccccCchhhcCCceeEEEecCCCceEEEEec-------cceEEEehh---HHHHHHHHhcCCeeeeeeeecCCCCeEEE
Confidence 66666666667889999999999988776664 469999843 1211100 233457999999999999999
Q ss_pred EEccCCCCeEEEEEee-CCeeEEEeEEEEecCCcEEEEEccCCCcEEEEEecCCcEEEEEE-EEeeeeCCCeeEEEEeCC
Q 000731 290 VVRFEEYDSVKICFFS-NNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNF-IWTTAVMENSTALVIDGS 367 (1325)
Q Consensus 290 ~~~d~~~~~VqLW~~~-n~~wylkqel~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~-~~~~~~~d~~~v~viDG~ 367 (1325)
++.|+ .+..+|+. +..-| +.+..|......|++|+.-|+ ++.++.||.+.++.- ++ +|. -+
T Consensus 625 gs~d~---k~~WfDldlsskPy--k~lr~H~~avr~Va~H~ryPL-fas~sdDgtv~Vfhg~VY----~Dl-------~q 687 (733)
T KOG0650|consen 625 GSYDK---KMCWFDLDLSSKPY--KTLRLHEKAVRSVAFHKRYPL-FASGSDDGTVIVFHGMVY----NDL-------LQ 687 (733)
T ss_pred ecCCC---eeEEEEcccCcchh--HHhhhhhhhhhhhhhccccce-eeeecCCCcEEEEeeeee----hhh-------hc
Confidence 99998 67777765 11112 355666556688999998776 667777787754321 11 010 00
Q ss_pred EEEEeecCCcCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEe
Q 000731 368 KILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVD 421 (1325)
Q Consensus 368 ~l~lt~l~~~~vPpPm~~~~l~~~~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~ 421 (1325)
+-++-|++. +..+...-.--|.++.|+|.- -.|.+++.||+|++|.
T Consensus 688 npliVPlK~------L~gH~~~~~~gVLd~~wHP~q--pWLfsAGAd~tirlfT 733 (733)
T KOG0650|consen 688 NPLIVPLKR------LRGHEKTNDLGVLDTIWHPRQ--PWLFSAGADGTIRLFT 733 (733)
T ss_pred CCceEeeee------ccCceeecccceEeecccCCC--ceEEecCCCceEEeeC
Confidence 112223221 001111122348899999998 7999999999999983
No 105
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.66 E-value=1.6e-14 Score=175.79 Aligned_cols=273 Identities=18% Similarity=0.176 Sum_probs=191.7
Q ss_pred CCEEEEEEccCCCEEEEEECCCcEEEEeCCCC--eEEEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeee
Q 000731 76 DSITAFDYLMEKEALIVGTSSGLLLLHSVDGN--ATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYEN 153 (1325)
Q Consensus 76 ~~V~~v~~spdg~~La~as~dG~I~lw~~~~~--~~e~vg~~~~~I~~~awSPDG~~LA~~s~dgtV~l~s~~~d~~~e~ 153 (1325)
+.-+.|.|-|+|+.|+++++||.|++|+.... ..+..-. .+....+..-++..|++++.+++|.+.+.. ....+.
T Consensus 14 ~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~--~g~~v~~ia~~s~~f~~~s~~~tv~~y~fp-s~~~~~ 90 (933)
T KOG1274|consen 14 GGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDI--SGELVSSIACYSNHFLTGSEQNTVLRYKFP-SGEEDT 90 (933)
T ss_pred CceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhc--cCceeEEEeecccceEEeeccceEEEeeCC-CCCccc
Confidence 46899999999999999999999999997653 2222221 344555566678899999999999886531 100010
Q ss_pred eccccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeecCCCCceeEEEEccC
Q 000731 154 PLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPS 233 (1325)
Q Consensus 154 ~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~~~v~~lawsPd 233 (1325)
.+.. ..-.+..++++++|+++| .++ .|-.||+-+..++....++.+|++.|.+|+|.|.
T Consensus 91 iL~R--------------ftlp~r~~~v~g~g~~ia-ags------dD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~ 149 (933)
T KOG1274|consen 91 ILAR--------------FTLPIRDLAVSGSGKMIA-AGS------DDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPK 149 (933)
T ss_pred eeee--------------eeccceEEEEecCCcEEE-eec------CceeEEEEeccccchheeecccCCceeeeeEcCC
Confidence 1110 112457899999999999 664 3578999999888888999999999999999999
Q ss_pred CCeEEEEecCCCCCCCCeEEEEeCC-CceEEEEEecc--C----C-CCcEEEEEEccCCCeeEEEEccCCCCeEEEEEee
Q 000731 234 GANIAAVYDRKSENKCPSIVFYERN-GLERSSFDINE--Q----I-DSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFS 305 (1325)
Q Consensus 234 G~~IAs~~~d~~~~~~~~V~~~e~n-Gl~~~~f~l~~--~----~-~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~ 305 (1325)
|++||+++.+ +.|.+|+.. |... +++.+ + . ...+..++|+|+|-.||+.+.|+ +|++++..
T Consensus 150 ~~fLAvss~d------G~v~iw~~~~~~~~--~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~---~Vkvy~r~ 218 (933)
T KOG1274|consen 150 GNFLAVSSCD------GKVQIWDLQDGILS--KTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDN---TVKVYSRK 218 (933)
T ss_pred CCEEEEEecC------ceEEEEEcccchhh--hhcccCCccccccccceeeeeeecCCCCeEEeeccCC---eEEEEccC
Confidence 9999999985 679999954 2111 12220 1 1 23467899999988888888777 89999998
Q ss_pred CCeeEEEeEEEEecC-Cc-EEEEEccCCCcEEEEEecCCcEEEEEEEEeeeeCCCeeEEEEeCCEEEEeecCCcCCCCCc
Q 000731 306 NNHWYLKYEIRYLRR-DG-IRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPM 383 (1325)
Q Consensus 306 n~~wylkqel~~~~~-~~-~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDG~~l~lt~l~~~~vPpPm 383 (1325)
+|. +...++.... .. ..+.|+|.|.+ |+..+.+|++. +|++..+
T Consensus 219 ~we--~~f~Lr~~~~ss~~~~~~wsPnG~Y-iAAs~~~g~I~----vWnv~t~--------------------------- 264 (933)
T KOG1274|consen 219 GWE--LQFKLRDKLSSSKFSDLQWSPNGKY-IAASTLDGQIL----VWNVDTH--------------------------- 264 (933)
T ss_pred Cce--eheeecccccccceEEEEEcCCCcE-EeeeccCCcEE----EEecccc---------------------------
Confidence 853 3233332111 22 67899998665 77777777764 4443211
Q ss_pred eeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEe
Q 000731 384 YLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVD 421 (1325)
Q Consensus 384 ~~~~l~~~~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~ 421 (1325)
.+-++...|.+.+|-|+. +.+-..+..|+..+|-
T Consensus 265 --~~~~~~~~Vc~~aw~p~~--n~it~~~~~g~~~~~~ 298 (933)
T KOG1274|consen 265 --ERHEFKRAVCCEAWKPNA--NAITLITALGTLGVSP 298 (933)
T ss_pred --hhccccceeEEEecCCCC--CeeEEEeeccccccCh
Confidence 112345678999999998 7777777777666654
No 106
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.66 E-value=7.1e-15 Score=159.54 Aligned_cols=304 Identities=13% Similarity=0.091 Sum_probs=211.5
Q ss_pred CCCEEEEEEccCCCEEEEEECCCcEEEEeCCCCeEE-EeceecCcEEEEEEcCCCCeEEEEeCCccEEEEe--ecCceee
Q 000731 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATE-VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMT--HDWDLLY 151 (1325)
Q Consensus 75 ~~~V~~v~~spdg~~La~as~dG~I~lw~~~~~~~e-~vg~~~~~I~~~awSPDG~~LA~~s~dgtV~l~s--~~~d~~~ 151 (1325)
.+.|+.++--.....+.++|+|.+-.||.++++.+- ....|.+.|++++|+|.|.+++++++|++--+|. -.|++-.
T Consensus 148 kDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~ 227 (481)
T KOG0300|consen 148 KDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPS 227 (481)
T ss_pred ccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCC
Confidence 468999888777788999999999999999998764 3444689999999999999999999999998885 3454332
Q ss_pred eee---ccccC----CCc--------------eec--cCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEE
Q 000731 152 ENP---LEELA----EGF--------------DVH--EPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWE 208 (1325)
Q Consensus 152 e~~---l~~~~----~~~--------------~Vs--~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd 208 (1325)
... ....+ ..+ .+. ...|.+|...+....|-.-|+..+ .+++ ||+--+||
T Consensus 228 ~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~v-TaSW------DRTAnlwD 300 (481)
T KOG0300|consen 228 NNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMV-TASW------DRTANLWD 300 (481)
T ss_pred CCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceee-eeec------cccceeee
Confidence 110 00000 001 110 334557888888889999999988 5554 59999999
Q ss_pred CCCCceeeeecCCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeCCCceEEEEEeccCCCCcEEEEEEccCCCeeE
Q 000731 209 RDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLA 288 (1325)
Q Consensus 209 ~~~G~l~~t~e~~~~~v~~lawsPdG~~IAs~~~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LA 288 (1325)
.++|+++..+.+|+.-...++=.|..+++.++++|. +.++||----.+.--.+.+ ++..|.++.|+-|-+ ++
T Consensus 301 VEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDt------TFRLWDFReaI~sV~VFQG-HtdtVTS~vF~~dd~-vV 372 (481)
T KOG0300|consen 301 VETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDT------TFRLWDFREAIQSVAVFQG-HTDTVTSVVFNTDDR-VV 372 (481)
T ss_pred eccCceeccccCcchhccccccCCcceEEEEeccCc------eeEeccchhhcceeeeecc-cccceeEEEEecCCc-ee
Confidence 999999999999998888999999999999999974 6999984322222212223 467899999998765 56
Q ss_pred EEEccCCCCeEEEEEeeCCeeEEEeEEEEecCCcEEEEEccCCCcEEEEEecCCcEEEEEEEEeeeeCCCeeEEEEeCCE
Q 000731 289 AVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSK 368 (1325)
Q Consensus 289 s~~~d~~~~~VqLW~~~n~~wylkqel~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDG~~ 368 (1325)
+++.|. +|++|++.|+.--| .+|+. =+|- .++.+.. ++.++.. |+ |...
T Consensus 373 SgSDDr---TvKvWdLrNMRspl-ATIRt---------dS~~--NRvavs~-g~~iIAi-------Ph--------DNRq 421 (481)
T KOG0300|consen 373 SGSDDR---TVKVWDLRNMRSPL-ATIRT---------DSPA--NRVAVSK-GHPIIAI-------PH--------DNRQ 421 (481)
T ss_pred ecCCCc---eEEEeeeccccCcc-eeeec---------CCcc--ceeEeec-CCceEEe-------cc--------CCce
Confidence 888888 99999999975211 11211 0111 2233322 1212100 22 4556
Q ss_pred EEEeecCCcCCCC-CceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCC
Q 000731 369 ILVTPLSLSLMPP-PMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAP 425 (1325)
Q Consensus 369 l~lt~l~~~~vPp-Pm~~~~l~~~~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~~~~~ 425 (1325)
+.+.++.+.-+|. |-.. .-.|..-|.++||+-+..-.-|.+++-|..+.-|+...+
T Consensus 422 vRlfDlnG~RlaRlPrts-RqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 422 VRLFDLNGNRLARLPRTS-RQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred EEEEecCCCccccCCccc-ccccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence 7777776554432 2221 124677899999988764456788889999999998754
No 107
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=1.2e-13 Score=151.88 Aligned_cols=281 Identities=14% Similarity=0.163 Sum_probs=196.5
Q ss_pred CCCEEEEEEccCCCEEEEEECCCcEEEEeCCCCe-EEEeceecCcEEEEEEcCCCCeEEEEeC--CccEEEEeecCceee
Q 000731 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNA-TEVVGRVEGGVRFISPSPDGDLLGVTTG--FGQILVMTHDWDLLY 151 (1325)
Q Consensus 75 ~~~V~~v~~spdg~~La~as~dG~I~lw~~~~~~-~e~vg~~~~~I~~~awSPDG~~LA~~s~--dgtV~l~s~~~d~~~ 151 (1325)
++.|.+|.|+++|+.|++.++|.+++|||...++ ...+....-||..++|-.....+..++. |.+|+..+-. .
T Consensus 14 ~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~----d 89 (311)
T KOG1446|consen 14 NGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLH----D 89 (311)
T ss_pred CCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEee----c
Confidence 5799999999999999999999999999987654 5577766789999999877777777765 7788665321 1
Q ss_pred eeeccccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeecCCCCceeEEEEc
Q 000731 152 ENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWM 231 (1325)
Q Consensus 152 e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~~~v~~laws 231 (1325)
...+. -|.||.+.|.+|+-+|-+..|. +++. |++||+||.+.-+++-.... .+ -...||.
T Consensus 90 NkylR-----------YF~GH~~~V~sL~~sP~~d~Fl-S~S~------D~tvrLWDlR~~~cqg~l~~-~~-~pi~AfD 149 (311)
T KOG1446|consen 90 NKYLR-----------YFPGHKKRVNSLSVSPKDDTFL-SSSL------DKTVRLWDLRVKKCQGLLNL-SG-RPIAAFD 149 (311)
T ss_pred CceEE-----------EcCCCCceEEEEEecCCCCeEE-eccc------CCeEEeeEecCCCCceEEec-CC-CcceeEC
Confidence 11221 3668999999999999999998 6654 58999999865555443321 11 2568999
Q ss_pred cCCCeEEEEecCCCCCCCCeEEEEeCCCce---EEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCe
Q 000731 232 PSGANIAAVYDRKSENKCPSIVFYERNGLE---RSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNH 308 (1325)
Q Consensus 232 PdG~~IAs~~~d~~~~~~~~V~~~e~nGl~---~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~n~~ 308 (1325)
|+|-++|.+... ..|++||.---. -..|.+..+.......|.|||||+.|...+..+ .+.+.|.=.+
T Consensus 150 p~GLifA~~~~~------~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s---~~~~lDAf~G- 219 (311)
T KOG1446|consen 150 PEGLIFALANGS------ELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNAS---FIYLLDAFDG- 219 (311)
T ss_pred CCCcEEEEecCC------CeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCC---cEEEEEccCC-
Confidence 999999988762 479999942111 123444433356789999999999999988777 6777775433
Q ss_pred eEEEeEEEEecCCc---EEEEEccCCCcEEEEEecCCcEEEEEEEEeeeeCCCeeEEEEeCCEEEEeecCCcCCCCCcee
Q 000731 309 WYLKYEIRYLRRDG---IRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYL 385 (1325)
Q Consensus 309 wylkqel~~~~~~~---~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDG~~l~lt~l~~~~vPpPm~~ 385 (1325)
.+++.+...+... ....|.||+.. +..+..||.+. +|... .|..+..|. + |
T Consensus 220 -~~~~tfs~~~~~~~~~~~a~ftPds~F-vl~gs~dg~i~----vw~~~----------tg~~v~~~~--~----~---- 273 (311)
T KOG1446|consen 220 -TVKSTFSGYPNAGNLPLSATFTPDSKF-VLSGSDDGTIH----VWNLE----------TGKKVAVLR--G----P---- 273 (311)
T ss_pred -cEeeeEeeccCCCCcceeEEECCCCcE-EEEecCCCcEE----EEEcC----------CCcEeeEec--C----C----
Confidence 3677777766443 67889999875 55555667775 45432 333333221 0 0
Q ss_pred eeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCC
Q 000731 386 FSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLP 423 (1325)
Q Consensus 386 ~~l~~~~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~~~ 423 (1325)
+.+++.++-|+|.- .++|++ +..+.+|-.+
T Consensus 274 ----~~~~~~~~~fnP~~--~mf~sa--~s~l~fw~p~ 303 (311)
T KOG1446|consen 274 ----NGGPVSCVRFNPRY--AMFVSA--SSNLVFWLPD 303 (311)
T ss_pred ----CCCCccccccCCce--eeeeec--CceEEEEecc
Confidence 23456677799986 556555 4578888765
No 108
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.65 E-value=1.4e-13 Score=158.35 Aligned_cols=259 Identities=17% Similarity=0.176 Sum_probs=168.5
Q ss_pred CEEEEEEccCCCEEEEEECCCcEEEEe-CCCCeEEEeceecCcEEEEEE----c----CCCCeEEEEeCCccEEEEeecC
Q 000731 77 SITAFDYLMEKEALIVGTSSGLLLLHS-VDGNATEVVGRVEGGVRFISP----S----PDGDLLGVTTGFGQILVMTHDW 147 (1325)
Q Consensus 77 ~V~~v~~spdg~~La~as~dG~I~lw~-~~~~~~e~vg~~~~~I~~~aw----S----PDG~~LA~~s~dgtV~l~s~~~ 147 (1325)
.|.++.|+..-+.+-++ +|..+.+|+ +.+...++..-.++-|...-+ | -..+.++++|.||.+.+.++..
T Consensus 16 ~vc~v~w~~~eei~~~~-dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il~k~~ 94 (737)
T KOG1524|consen 16 KVCCVDWSSNEEIYFVS-DDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVILNKSA 94 (737)
T ss_pred eEEeecccccceEEEec-cCceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEecccc
Confidence 56789999887776554 555666654 433222211111111111100 0 1236899999999999988876
Q ss_pred ceeeeeeccccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeecCCCCceeE
Q 000731 148 DLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAV 227 (1325)
Q Consensus 148 d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~~~v~~ 227 (1325)
.+-..+. +|.+.+.+-.|+|||.-|. ++ ++|+.||+|++ +|-+.++.......+.+
T Consensus 95 rVE~sv~----------------AH~~A~~~gRW~~dGtgLl-t~------GEDG~iKiWSr-sGMLRStl~Q~~~~v~c 150 (737)
T KOG1524|consen 95 RVERSIS----------------AHAAAISSGRWSPDGAGLL-TA------GEDGVIKIWSR-SGMLRSTVVQNEESIRC 150 (737)
T ss_pred hhhhhhh----------------hhhhhhhhcccCCCCceee-ee------cCCceEEEEec-cchHHHHHhhcCceeEE
Confidence 5433332 3446678889999999888 44 45799999999 99999998877888999
Q ss_pred EEEccCCCeEEEEecCCCCCCCCeEEEEeCCCceEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCC
Q 000731 228 LEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNN 307 (1325)
Q Consensus 228 lawsPdG~~IAs~~~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~n~ 307 (1325)
++|-|+.+.|.-++.+. -.|+=.-.|-... ..+ .|++-|.++.|||.++++|+|++|- ..++||...-
T Consensus 151 ~~W~p~S~~vl~c~g~h-----~~IKpL~~n~k~i---~Wk-AHDGiiL~~~W~~~s~lI~sgGED~---kfKvWD~~G~ 218 (737)
T KOG1524|consen 151 ARWAPNSNSIVFCQGGH-----ISIKPLAANSKII---RWR-AHDGLVLSLSWSTQSNIIASGGEDF---RFKIWDAQGA 218 (737)
T ss_pred EEECCCCCceEEecCCe-----EEEeeccccccee---EEe-ccCcEEEEeecCccccceeecCCce---eEEeecccCc
Confidence 99999999888776541 1232222232111 111 2467799999999999999999998 8999997642
Q ss_pred eeEEEeEEEEecCCc-EEEEEccCCCcEEEEEecCCcEEEEEEEEeeeeCCCeeEEEEeCCEEEEeecCCcCCCCCceee
Q 000731 308 HWYLKYEIRYLRRDG-IRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLF 386 (1325)
Q Consensus 308 ~wylkqel~~~~~~~-~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDG~~l~lt~l~~~~vPpPm~~~ 386 (1325)
.-|-. ..+ ..+ ++++|.||.. ..+|+- . +++ |..
T Consensus 219 ~Lf~S---~~~-ey~ITSva~npd~~--~~v~S~----n----------------------t~R---~~~---------- 253 (737)
T KOG1524|consen 219 NLFTS---AAE-EYAITSVAFNPEKD--YLLWSY----N----------------------TAR---FSS---------- 253 (737)
T ss_pred ccccC---Chh-ccceeeeeeccccc--eeeeee----e----------------------eee---ecC----------
Confidence 21110 011 223 8999999943 234331 0 111 111
Q ss_pred eecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEe
Q 000731 387 SLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVD 421 (1325)
Q Consensus 387 ~l~~~~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~ 421 (1325)
...+.|..++||||| ..+|.+++.|.+.+--
T Consensus 254 --p~~GSifnlsWS~DG--TQ~a~gt~~G~v~~A~ 284 (737)
T KOG1524|consen 254 --PRVGSIFNLSWSADG--TQATCGTSTGQLIVAY 284 (737)
T ss_pred --CCccceEEEEEcCCC--ceeeccccCceEEEee
Confidence 123678899999999 8999999999776543
No 109
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.65 E-value=2.9e-14 Score=161.11 Aligned_cols=249 Identities=14% Similarity=0.132 Sum_probs=181.9
Q ss_pred eeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEEE
Q 000731 23 LQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLH 102 (1325)
Q Consensus 23 ~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~V~~v~~spdg~~La~as~dG~I~lw 102 (1325)
+..+.+-+..+.+.++..|...+.+|- ..++. ..+ +.+|. -.|+++.|+|+...+++++.|-.|++|
T Consensus 222 i~ald~~~s~~~ilTGG~d~~av~~d~--~s~q~---l~~----~~Gh~----kki~~v~~~~~~~~v~~aSad~~i~vw 288 (506)
T KOG0289|consen 222 ITALDIIPSSSKILTGGEDKTAVLFDK--PSNQI---LAT----LKGHT----KKITSVKFHKDLDTVITASADEIIRVW 288 (506)
T ss_pred eeEEeecCCCCcceecCCCCceEEEec--chhhh---hhh----ccCcc----eEEEEEEeccchhheeecCCcceEEee
Confidence 333333344588888888877888887 34432 222 45553 379999999999999999999999999
Q ss_pred eCCCCeE-EEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEee-cCceeeeeeccccCCCceeccCccccCCCCeEEEE
Q 000731 103 SVDGNAT-EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTH-DWDLLYENPLEELAEGFDVHEPELSSSFSFKSPIS 180 (1325)
Q Consensus 103 ~~~~~~~-e~vg~~~~~I~~~awSPDG~~LA~~s~dgtV~l~s~-~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~is 180 (1325)
+...... ...-.|+..|+.+.-.|.|++|.+++.||+.-+-+. ++..++ .+.+. ..+-.+.+.+
T Consensus 289 s~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt---~vs~~-----------~s~v~~ts~~ 354 (506)
T KOG0289|consen 289 SVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLT---VVSDE-----------TSDVEYTSAA 354 (506)
T ss_pred ccccccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEE---EEeec-----------cccceeEEee
Confidence 9865432 244557899999999999999999999999866432 222221 11111 0123578999
Q ss_pred EecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeecCCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeCCCc
Q 000731 181 WRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGL 260 (1325)
Q Consensus 181 WspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~~~v~~lawsPdG~~IAs~~~d~~~~~~~~V~~~e~nGl 260 (1325)
|.|||-.|+ .++ .|+.+||||..++.-.+.+.+|.+.|.+|+|+-+|-++|++.+| ..|++||.--+
T Consensus 355 fHpDgLifg-tgt------~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add------~~V~lwDLRKl 421 (506)
T KOG0289|consen 355 FHPDGLIFG-TGT------PDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADD------GSVKLWDLRKL 421 (506)
T ss_pred EcCCceEEe-ccC------CCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecC------CeEEEEEehhh
Confidence 999999999 664 46899999998888888899999999999999999999999986 45999994322
Q ss_pred e-EEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeEEEeEEE
Q 000731 261 E-RSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIR 316 (1325)
Q Consensus 261 ~-~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~n~~wylkqel~ 316 (1325)
+ ...|.+. ....|.++.|.+.|++|++++.+- +|.++.-....|....++.
T Consensus 422 ~n~kt~~l~--~~~~v~s~~fD~SGt~L~~~g~~l---~Vy~~~k~~k~W~~~~~~~ 473 (506)
T KOG0289|consen 422 KNFKTIQLD--EKKEVNSLSFDQSGTYLGIAGSDL---QVYICKKKTKSWTEIKELA 473 (506)
T ss_pred cccceeecc--ccccceeEEEcCCCCeEEeeccee---EEEEEecccccceeeehhh
Confidence 2 1223332 223599999999999999997765 5555555566675544443
No 110
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.65 E-value=2e-14 Score=164.98 Aligned_cols=231 Identities=14% Similarity=0.121 Sum_probs=168.0
Q ss_pred CCCEEEEEEccCCCEEEEEECCCcEEEEeCCCCeE-EEeceecCcEEEEEEcCCCCe-EEEEeCCccEEEEeecCceeee
Q 000731 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNAT-EVVGRVEGGVRFISPSPDGDL-LGVTTGFGQILVMTHDWDLLYE 152 (1325)
Q Consensus 75 ~~~V~~v~~spdg~~La~as~dG~I~lw~~~~~~~-e~vg~~~~~I~~~awSPDG~~-LA~~s~dgtV~l~s~~~d~~~e 152 (1325)
.+.|.++.|-.||+.||.|.+.|.|+++|..+..+ ...-.|+..|..+.|+|++.+ |++|+.|+.+++|+.+--.+ .
T Consensus 68 k~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v-~ 146 (487)
T KOG0310|consen 68 KDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYV-Q 146 (487)
T ss_pred ccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEE-E
Confidence 36799999999999999999999999999665322 345567999999999998665 55566667777765432211 1
Q ss_pred eeccccCCCceeccCccccCCCCeEEEEEecCCc-EEEEeeccccccCCCCEEEEEECCCC-ceeeeecCCCCceeEEEE
Q 000731 153 NPLEELAEGFDVHEPELSSSFSFKSPISWRGDGK-YFATLSEFCNSSKLHKRLKVWERDSG-TLQASSELKAFMGAVLEW 230 (1325)
Q Consensus 153 ~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~-~lAtvss~d~~~~~d~~irVWd~~~G-~l~~t~e~~~~~v~~law 230 (1325)
.. ..+|.|.|.+.+|+|-.. .++ ++++ |++||+||...- ..+..+ .|..+|.++.+
T Consensus 147 ~~--------------l~~htDYVR~g~~~~~~~hivv-tGsY------Dg~vrl~DtR~~~~~v~el-nhg~pVe~vl~ 204 (487)
T KOG0310|consen 147 AE--------------LSGHTDYVRCGDISPANDHIVV-TGSY------DGKVRLWDTRSLTSRVVEL-NHGCPVESVLA 204 (487)
T ss_pred EE--------------ecCCcceeEeeccccCCCeEEE-ecCC------CceEEEEEeccCCceeEEe-cCCCceeeEEE
Confidence 11 126778999999999866 555 6655 589999998544 333333 47888999999
Q ss_pred ccCCCeEEEEecCCCCCCCCeEEEEeCC-CceEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCee
Q 000731 231 MPSGANIAAVYDRKSENKCPSIVFYERN-GLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHW 309 (1325)
Q Consensus 231 sPdG~~IAs~~~d~~~~~~~~V~~~e~n-Gl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~n~~w 309 (1325)
-|+|.+||+++. +.|++||.. |.+. ......+.-.|++|.++.||+.|.+++-|+ .|+++++.||.
T Consensus 205 lpsgs~iasAgG-------n~vkVWDl~~G~ql--l~~~~~H~KtVTcL~l~s~~~rLlS~sLD~---~VKVfd~t~~K- 271 (487)
T KOG0310|consen 205 LPSGSLIASAGG-------NSVKVWDLTTGGQL--LTSMFNHNKTVTCLRLASDSTRLLSGSLDR---HVKVFDTTNYK- 271 (487)
T ss_pred cCCCCEEEEcCC-------CeEEEEEecCCcee--hhhhhcccceEEEEEeecCCceEeeccccc---ceEEEEccceE-
Confidence 999999999985 579999965 4221 111122345799999999999999999999 89999998864
Q ss_pred EEEeEEEEecCCcEEEEEccCCCcEEEEEecCCcE
Q 000731 310 YLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQI 344 (1325)
Q Consensus 310 ylkqel~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~ 344 (1325)
..+.+.|+ ....++.-+|++. ++.++-.+|-+
T Consensus 272 -vv~s~~~~-~pvLsiavs~dd~-t~viGmsnGlv 303 (487)
T KOG0310|consen 272 -VVHSWKYP-GPVLSIAVSPDDQ-TVVIGMSNGLV 303 (487)
T ss_pred -EEEeeecc-cceeeEEecCCCc-eEEEeccccee
Confidence 45666663 2237777777654 35665555533
No 111
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.65 E-value=2e-15 Score=167.05 Aligned_cols=275 Identities=13% Similarity=0.103 Sum_probs=189.3
Q ss_pred CCCEEEEEEccCC-CEEEEEECCCcEEEEeCCCCeE-EEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeee
Q 000731 75 GDSITAFDYLMEK-EALIVGTSSGLLLLHSVDGNAT-EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYE 152 (1325)
Q Consensus 75 ~~~V~~v~~spdg-~~La~as~dG~I~lw~~~~~~~-e~vg~~~~~I~~~awSPDG~~LA~~s~dgtV~l~s~~~d~~~e 152 (1325)
.+.|.+++=+|.. ..+++|+.||.|+|||+....+ ..+..|.|-|..++++- +.+.+++.|+||+.|..+..++..
T Consensus 66 rdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~~p~~t 143 (433)
T KOG0268|consen 66 RDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDGPPLHT 143 (433)
T ss_pred ccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeeccCCccee
Confidence 3688888888877 7899999999999999987544 36667889999999986 789999999999999877655444
Q ss_pred eeccccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeecCCCCceeEEEEcc
Q 000731 153 NPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMP 232 (1325)
Q Consensus 153 ~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~~~v~~lawsP 232 (1325)
+... ..+..|.=..-+..|||+| ..|-|||.+--..++.+......+.++.|+|
T Consensus 144 ilg~-----------------s~~~gIdh~~~~~~FaTcG---------e~i~IWD~~R~~Pv~smswG~Dti~svkfNp 197 (433)
T KOG0268|consen 144 ILGK-----------------SVYLGIDHHRKNSVFATCG---------EQIDIWDEQRDNPVSSMSWGADSISSVKFNP 197 (433)
T ss_pred eecc-----------------ccccccccccccccccccC---------ceeeecccccCCccceeecCCCceeEEecCC
Confidence 3221 1223343333455788443 5899999866666666665555679999999
Q ss_pred CCC-eEEEEecCCCCCCCCeEEEEeC-CCceEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeE
Q 000731 233 SGA-NIAAVYDRKSENKCPSIVFYER-NGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWY 310 (1325)
Q Consensus 233 dG~-~IAs~~~d~~~~~~~~V~~~e~-nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~n~~wy 310 (1325)
--. .||++..| ..|++||. .+.......+ .-.-+.|+|||.+-.+.++.+|. .+..+|+.+.+
T Consensus 198 vETsILas~~sD------rsIvLyD~R~~~Pl~KVi~----~mRTN~IswnPeafnF~~a~ED~---nlY~~DmR~l~-- 262 (433)
T KOG0268|consen 198 VETSILASCASD------RSIVLYDLRQASPLKKVIL----TMRTNTICWNPEAFNFVAANEDH---NLYTYDMRNLS-- 262 (433)
T ss_pred CcchheeeeccC------CceEEEecccCCccceeee----eccccceecCccccceeeccccc---cceehhhhhhc--
Confidence 764 67777665 56999983 3322222222 12345788888777777777766 45555444321
Q ss_pred EEeEEEEecCCcEEEEEccCCCcEEEEEecCCcEEEEEEEEeeeeCCCeeEEEEeCCEEEEeecCCcCCCCCceeeeecC
Q 000731 311 LKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKF 390 (1325)
Q Consensus 311 lkqel~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDG~~l~lt~l~~~~vPpPm~~~~l~~ 390 (1325)
.|. -. ...|
T Consensus 263 --------------------~p~--------------------------------------------------~v-~~dh 271 (433)
T KOG0268|consen 263 --------------------RPL--------------------------------------------------NV-HKDH 271 (433)
T ss_pred --------------------ccc--------------------------------------------------hh-hccc
Confidence 010 00 1135
Q ss_pred CCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccccccCCceeEeeeccccccCcEEEEEEecCCeEEEEEecCCC
Q 000731 391 PTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPR 470 (1325)
Q Consensus 391 ~~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~~~ 470 (1325)
-+.|.+|+|||.| +-+++++.|.+|+||.......-.... ...-..|.++.|+-|.+++.+++++
T Consensus 272 vsAV~dVdfsptG--~EfvsgsyDksIRIf~~~~~~SRdiYh-----------tkRMq~V~~Vk~S~Dskyi~SGSdd-- 336 (433)
T KOG0268|consen 272 VSAVMDVDFSPTG--QEFVSGSYDKSIRIFPVNHGHSRDIYH-----------TKRMQHVFCVKYSMDSKYIISGSDD-- 336 (433)
T ss_pred ceeEEEeccCCCc--chhccccccceEEEeecCCCcchhhhh-----------HhhhheeeEEEEeccccEEEecCCC--
Confidence 6778999999999 999999999999999987421110000 0011268899999999999999987
Q ss_pred CceEEEEe
Q 000731 471 HSNYFRGA 478 (1325)
Q Consensus 471 ~~~~~~~~ 478 (1325)
..+.+|..
T Consensus 337 ~nvRlWka 344 (433)
T KOG0268|consen 337 GNVRLWKA 344 (433)
T ss_pred cceeeeec
Confidence 46778864
No 112
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.64 E-value=2.3e-14 Score=153.48 Aligned_cols=244 Identities=12% Similarity=0.086 Sum_probs=176.0
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEE
Q 000731 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1325)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~V~~v~~spdg~~La~as~dG~I~l 101 (1325)
.++.+-|+.++|.||+|+.|+..-.|-. .+++. +-+ ..+| .+.|++++..-+.+.|++|++|.+++|
T Consensus 12 plTqiKyN~eGDLlFscaKD~~~~vw~s--~nGer---lGt----y~GH----tGavW~~Did~~s~~liTGSAD~t~kL 78 (327)
T KOG0643|consen 12 PLTQIKYNREGDLLFSCAKDSTPTVWYS--LNGER---LGT----YDGH----TGAVWCCDIDWDSKHLITGSADQTAKL 78 (327)
T ss_pred ccceEEecCCCcEEEEecCCCCceEEEe--cCCce---eee----ecCC----CceEEEEEecCCcceeeeccccceeEE
Confidence 6778899999999999999998888876 45553 332 4555 478999999999999999999999999
Q ss_pred EeCCCCeEEEeceecCcEEEEEEcCCCCeEEEEeCCc-----cEEEEeecCceeeeeeccccCCCceeccCc---cccCC
Q 000731 102 HSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFG-----QILVMTHDWDLLYENPLEELAEGFDVHEPE---LSSSF 173 (1325)
Q Consensus 102 w~~~~~~~e~vg~~~~~I~~~awSPDG~~LA~~s~dg-----tV~l~s~~~d~~~e~~l~~~~~~~~Vs~tq---f~~~~ 173 (1325)
||+.+++..-.-.....|+.+.||++|.+++..+.+. .|-+.. +...+ ...+++.- ...++
T Consensus 79 WDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fd----------i~~~~-~~~~s~ep~~kI~t~~ 147 (327)
T KOG0643|consen 79 WDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFD----------IRDDS-SDIDSEEPYLKIPTPD 147 (327)
T ss_pred EEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEE----------ccCCh-hhhcccCceEEecCCc
Confidence 9999987642223467899999999999887776542 232221 11000 01111111 11345
Q ss_pred CCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeee-cCCCCceeEEEEccCCCeEEEEecCCCCCCCCeE
Q 000731 174 SFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASS-ELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSI 252 (1325)
Q Consensus 174 ~~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~-e~~~~~v~~lawsPdG~~IAs~~~d~~~~~~~~V 252 (1325)
+.+++.-|.|-|++|+ .+ ..++.|.+||..+|...-.+ +-|...++.+.++||+.+..+++.|.+ -
T Consensus 148 skit~a~Wg~l~~~ii-~G------he~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dtt------a 214 (327)
T KOG0643|consen 148 SKITSALWGPLGETII-AG------HEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTT------A 214 (327)
T ss_pred cceeeeeecccCCEEE-Ee------cCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCcc------c
Confidence 7889999999999998 44 35789999999898655544 668888999999999999999998753 3
Q ss_pred EEEeCCCc----------------------------------------eEEEEEec-------------cCCCCcEEEEE
Q 000731 253 VFYERNGL----------------------------------------ERSSFDIN-------------EQIDSTVELLK 279 (1325)
Q Consensus 253 ~~~e~nGl----------------------------------------~~~~f~l~-------------~~~~~~V~~la 279 (1325)
++||-..+ +.|.|.-+ ..|-++|++|+
T Consensus 215 kl~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvA 294 (327)
T KOG0643|consen 215 KLVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVA 294 (327)
T ss_pred eeeeccceeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeE
Confidence 33432111 11112111 01236799999
Q ss_pred EccCCCeeEEEEccCCCCeEEEEEee
Q 000731 280 WNCMSDLLAAVVRFEEYDSVKICFFS 305 (1325)
Q Consensus 280 WSpDg~~LAs~~~d~~~~~VqLW~~~ 305 (1325)
|+|||+.-++|+.|+ .|+|-...
T Consensus 295 fhPdGksYsSGGEDG---~VR~h~Fd 317 (327)
T KOG0643|consen 295 FHPDGKSYSSGGEDG---YVRLHHFD 317 (327)
T ss_pred ECCCCcccccCCCCc---eEEEEEec
Confidence 999999999999999 99988765
No 113
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.64 E-value=2.7e-14 Score=155.41 Aligned_cols=252 Identities=11% Similarity=0.080 Sum_probs=180.4
Q ss_pred ccccccc-ceeEEeeecCCCEEEEEeC-CCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEE
Q 000731 15 ELQSKDE-ILQFSALDIEQNRLFFASS-ANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIV 92 (1325)
Q Consensus 15 ~~~~~~~-~~~~~~~d~~~~~l~~~s~-~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~V~~v~~spdg~~La~ 92 (1325)
++..|++ .+.+++|.+..+-+.++++ |+.+..|++. .++.. .|....++ .+.|.++.|+-||..+.+
T Consensus 21 ev~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq-~~g~~------~~ka~~~~----~~PvL~v~WsddgskVf~ 89 (347)
T KOG0647|consen 21 EVPNPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQ-NSGQL------VPKAQQSH----DGPVLDVCWSDDGSKVFS 89 (347)
T ss_pred ecCCCcccchheeEeccccCceEEecccCCceEEEEEe-cCCcc------cchhhhcc----CCCeEEEEEccCCceEEe
Confidence 3433433 8999999998888887766 9999999983 11221 11111222 578999999999999999
Q ss_pred EECCCcEEEEeCCCCeEEEeceecCcEEEEEEcCCCC--eEEEEeCCccEEEEe-ecCceeeeeeccccC----------
Q 000731 93 GTSSGLLLLHSVDGNATEVVGRVEGGVRFISPSPDGD--LLGVTTGFGQILVMT-HDWDLLYENPLEELA---------- 159 (1325)
Q Consensus 93 as~dG~I~lw~~~~~~~e~vg~~~~~I~~~awSPDG~--~LA~~s~dgtV~l~s-~~~d~~~e~~l~~~~---------- 159 (1325)
|+.||.+++||+.+++...+|.|+++|.++.|=+-.. .|++||.|+||+.|+ |.-.++..+.|..--
T Consensus 90 g~~Dk~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~ 169 (347)
T KOG0647|consen 90 GGCDKQAKLWDLASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMA 169 (347)
T ss_pred eccCCceEEEEccCCCeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCcee
Confidence 9999999999999999999999999999999977665 899999999999985 555555555443321
Q ss_pred ----CCcee---c----cCccccC----CCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCC--------ceee
Q 000731 160 ----EGFDV---H----EPELSSS----FSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSG--------TLQA 216 (1325)
Q Consensus 160 ----~~~~V---s----~tqf~~~----~~~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G--------~l~~ 216 (1325)
..++| + .++|+.+ .-.+.+|+-..|++-+| +++++ |++-|...+.+ ++++
T Consensus 170 vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~a-lGsiE------Grv~iq~id~~~~~~nFtFkCHR 242 (347)
T KOG0647|consen 170 VVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFA-LGSIE------GRVAIQYIDDPNPKDNFTFKCHR 242 (347)
T ss_pred EEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceE-eeeec------ceEEEEecCCCCccCceeEEEec
Confidence 01111 0 3344422 23468899999998888 88764 56777766555 2333
Q ss_pred eecCCC---CceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeCCCceEEEEEeccCCCCcEEEEEEccCCCeeEEEEc
Q 000731 217 SSELKA---FMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVR 292 (1325)
Q Consensus 217 t~e~~~---~~v~~lawsPdG~~IAs~~~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~ 292 (1325)
...+.. +.|++|+|.|.-..||+++.| ++..|||++- ++.-++- ..+...|...+||.+|.++|-+..
T Consensus 243 ~~~~~~~~VYaVNsi~FhP~hgtlvTaGsD------Gtf~FWDkda-r~kLk~s-~~~~qpItcc~fn~~G~ifaYA~g 313 (347)
T KOG0647|consen 243 STNSVNDDVYAVNSIAFHPVHGTLVTAGSD------GTFSFWDKDA-RTKLKTS-ETHPQPITCCSFNRNGSIFAYALG 313 (347)
T ss_pred cCCCCCCceEEecceEeecccceEEEecCC------ceEEEecchh-hhhhhcc-CcCCCccceeEecCCCCEEEEEee
Confidence 322223 347899999999999999886 6799999873 2221111 233567999999999999998764
No 114
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.64 E-value=6.3e-14 Score=152.57 Aligned_cols=285 Identities=15% Similarity=0.109 Sum_probs=174.8
Q ss_pred eEEEeceecCcEEEEEEcC-CCCeEEEEeCCccEEEEeecCceeeeeeccccCCCceeccCccccCCCCeEEEEEecCCc
Q 000731 108 ATEVVGRVEGGVRFISPSP-DGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGK 186 (1325)
Q Consensus 108 ~~e~vg~~~~~I~~~awSP-DG~~LA~~s~dgtV~l~s~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~ 186 (1325)
..++-+.-++.|.+++||| +..+++.+|.||+|++|.-.-+ +.... ..-+.|++.+.+++|+-||.
T Consensus 19 d~ev~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~---g~~~~----------ka~~~~~~PvL~v~Wsddgs 85 (347)
T KOG0647|consen 19 DYEVPNPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNS---GQLVP----------KAQQSHDGPVLDVCWSDDGS 85 (347)
T ss_pred ceecCCCcccchheeEeccccCceEEecccCCceEEEEEecC---Ccccc----------hhhhccCCCeEEEEEccCCc
Confidence 3455555678899999999 5556667889999988742211 01100 01124567789999999998
Q ss_pred EEEEeeccccccCCCCEEEEEECCCCceeeeecCCCCceeEEEEccCCC--eEEEEecCCCCCCCCeEEEEeC-CCceEE
Q 000731 187 YFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGA--NIAAVYDRKSENKCPSIVFYER-NGLERS 263 (1325)
Q Consensus 187 ~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~~~v~~lawsPdG~--~IAs~~~d~~~~~~~~V~~~e~-nGl~~~ 263 (1325)
.++ +++. |+.+|+||..+|+..... .|++.+..+.|=+-.+ .|++|+.|+ +|+|||. +-...
T Consensus 86 kVf-~g~~------Dk~~k~wDL~S~Q~~~v~-~Hd~pvkt~~wv~~~~~~cl~TGSWDK------TlKfWD~R~~~pv- 150 (347)
T KOG0647|consen 86 KVF-SGGC------DKQAKLWDLASGQVSQVA-AHDAPVKTCHWVPGMNYQCLVTGSWDK------TLKFWDTRSSNPV- 150 (347)
T ss_pred eEE-eecc------CCceEEEEccCCCeeeee-ecccceeEEEEecCCCcceeEeccccc------ceeecccCCCCee-
Confidence 777 6643 589999999999776654 4999999999988877 899999986 5999994 32221
Q ss_pred EEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeEEEeEEEEecCCc-EEEEEccCCCcEEEEEecCC
Q 000731 264 SFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDG-IRFMWHPTKPLQLICWTLDG 342 (1325)
Q Consensus 264 ~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~n~~wylkqel~~~~~~~-~~v~Wsp~~~~~L~~~~~~g 342 (1325)
+++..| +.|+++. ---.++++++.++ .|.++++.|.---.| .+..+-+-. .+++=.+++... .+++-.|
T Consensus 151 -~t~~LP--eRvYa~D--v~~pm~vVata~r---~i~vynL~n~~te~k-~~~SpLk~Q~R~va~f~d~~~~-alGsiEG 220 (347)
T KOG0647|consen 151 -ATLQLP--ERVYAAD--VLYPMAVVATAER---HIAVYNLENPPTEFK-RIESPLKWQTRCVACFQDKDGF-ALGSIEG 220 (347)
T ss_pred -eeeecc--ceeeehh--ccCceeEEEecCC---cEEEEEcCCCcchhh-hhcCcccceeeEEEEEecCCce-Eeeeecc
Confidence 223333 2344432 2245788888888 799999977421111 111111111 445444554432 4444444
Q ss_pred cEEEEEEEEeeeeCCCeeEEEEeCCEEEEeecCCcCCCCCceeeeec-CCC---CEEEEEEecCCCCCEEEEEECCCcEE
Q 000731 343 QITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLK-FPT---AVTEMAFYSKSSKNCLAAILSDGCLC 418 (1325)
Q Consensus 343 ~~~~~~~~~~~~~~d~~~v~viDG~~l~lt~l~~~~vPpPm~~~~l~-~~~---~V~~VaFSpdg~~~~LAs~s~Dgti~ 418 (1325)
.+.+ ..++ +++...-.+| -|+++-. ..+ .|++|+|+|.. .+|+++++||++.
T Consensus 221 rv~i----q~id----------~~~~~~nFtF--------kCHR~~~~~~~~VYaVNsi~FhP~h--gtlvTaGsDGtf~ 276 (347)
T KOG0647|consen 221 RVAI----QYID----------DPNPKDNFTF--------KCHRSTNSVNDDVYAVNSIAFHPVH--GTLVTAGSDGTFS 276 (347)
T ss_pred eEEE----EecC----------CCCccCceeE--------EEeccCCCCCCceEEecceEeeccc--ceEEEecCCceEE
Confidence 3321 1111 1110000011 1222111 111 48999999987 8999999999999
Q ss_pred EEeCCCCCccccccCCceeEeeeccccccCcEEEEEEecCCeEEEEEe
Q 000731 419 VVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSH 466 (1325)
Q Consensus 419 lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~ 466 (1325)
+||-+....+.+. +.+...|..-+|..+|.++|.+.
T Consensus 277 FWDkdar~kLk~s------------~~~~qpItcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 277 FWDKDARTKLKTS------------ETHPQPITCCSFNRNGSIFAYAL 312 (347)
T ss_pred Eecchhhhhhhcc------------CcCCCccceeEecCCCCEEEEEe
Confidence 9998764333111 12234677778999999988653
No 115
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.63 E-value=5e-15 Score=166.49 Aligned_cols=264 Identities=13% Similarity=0.072 Sum_probs=185.0
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEE
Q 000731 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1325)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~V~~v~~spdg~~La~as~dG~I~l 101 (1325)
.+..+.|=..+++++.+..|..|..|+. ..++. -.+.+ |.+- .+.|+++.|-+++..++.++.|+.+++
T Consensus 177 ev~~v~~l~~sdtlatgg~Dr~Ik~W~v--~~~k~-~~~~t----LaGs----~g~it~~d~d~~~~~~iAas~d~~~r~ 245 (459)
T KOG0288|consen 177 EVHDVEFLRNSDTLATGGSDRIIKLWNV--LGEKS-ELIST----LAGS----LGNITSIDFDSDNKHVIAASNDKNLRL 245 (459)
T ss_pred ccceeEEccCcchhhhcchhhhhhhhhc--ccchh-hhhhh----hhcc----CCCcceeeecCCCceEEeecCCCceee
Confidence 5666778788899999988888999998 33331 12333 2221 468999999999999999999999999
Q ss_pred EeCCCCeE-EEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeeeccccCCCceeccCccccCCCCeEEEE
Q 000731 102 HSVDGNAT-EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPIS 180 (1325)
Q Consensus 102 w~~~~~~~-e~vg~~~~~I~~~awSPDG~~LA~~s~dgtV~l~s~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~is 180 (1325)
||++..+. ..+..|.+.|+++.|.-+...+++++.|.||++ ||.....+..+.- .+ .....|.
T Consensus 246 Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~----WDl~k~~C~kt~l----------~~--S~cnDI~ 309 (459)
T KOG0288|consen 246 WNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKL----WDLQKAYCSKTVL----------PG--SQCNDIV 309 (459)
T ss_pred eeccchhhhhhhcccccceeeehhhccccceeeccccchhhh----hhhhhhheecccc----------cc--ccccceE
Confidence 99998654 333347999999999988777999999999965 5554444333211 00 1112233
Q ss_pred EecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeecCCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeCCCc
Q 000731 181 WRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGL 260 (1325)
Q Consensus 181 WspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~~~v~~lawsPdG~~IAs~~~d~~~~~~~~V~~~e~nGl 260 (1325)
-+ +..++ ++ ..|++||.||..++.+...-+ ..|.+.+|..+++|..|-++++| .++.+++.-+.
T Consensus 310 ~~--~~~~~-Sg------H~DkkvRfwD~Rs~~~~~sv~-~gg~vtSl~ls~~g~~lLsssRD------dtl~viDlRt~ 373 (459)
T KOG0288|consen 310 CS--ISDVI-SG------HFDKKVRFWDIRSADKTRSVP-LGGRVTSLDLSMDGLELLSSSRD------DTLKVIDLRTK 373 (459)
T ss_pred ec--ceeee-ec------ccccceEEEeccCCceeeEee-cCcceeeEeeccCCeEEeeecCC------Cceeeeecccc
Confidence 22 33444 33 346899999965777766644 55689999999999999988886 45888885443
Q ss_pred eE-EEEEeccC-CCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeEEEeEEEEecCC--cEEEEEccCCCc
Q 000731 261 ER-SSFDINEQ-IDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRD--GIRFMWHPTKPL 333 (1325)
Q Consensus 261 ~~-~~f~l~~~-~~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~n~~wylkqel~~~~~~--~~~v~Wsp~~~~ 333 (1325)
.. +.|.-..- -...+..+.|||||.++|.|+.|+ .|.||++.+.+. -..+..+... .+++.|+|.|..
T Consensus 374 eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dg---sv~iW~v~tgKl--E~~l~~s~s~~aI~s~~W~~sG~~ 445 (459)
T KOG0288|consen 374 EIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADG---SVYIWSVFTGKL--EKVLSLSTSNAAITSLSWNPSGSG 445 (459)
T ss_pred cEEEEeeccccccccccceeEECCCCceeeeccCCC---cEEEEEccCceE--EEEeccCCCCcceEEEEEcCCCch
Confidence 32 22332211 123478899999999999999999 999999987653 1222222223 388999998765
No 116
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.63 E-value=1.1e-14 Score=171.07 Aligned_cols=251 Identities=13% Similarity=0.066 Sum_probs=186.8
Q ss_pred eeecCCCE-EEEEeCCCcEEEEecccccccccce-eeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEEEeC
Q 000731 27 ALDIEQNR-LFFASSANNIYSAQLSSFQNERASI-KTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSV 104 (1325)
Q Consensus 27 ~~d~~~~~-l~~~s~~~~i~~~~~~~~~~~~~~~-~~~l~~~l~~~~~~~~~~V~~v~~spdg~~La~as~dG~I~lw~~ 104 (1325)
-.|+-++. ||+++-|+.|+.|+.+...++.+.. +.+ +..| .+.|.++...-+|+.|+++|.|-+|++|+.
T Consensus 31 q~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~as----me~H----sDWVNDiiL~~~~~tlIS~SsDtTVK~W~~ 102 (735)
T KOG0308|consen 31 QLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIAS----MEHH----SDWVNDIILCGNGKTLISASSDTTVKVWNA 102 (735)
T ss_pred cccCCCCceEEecCCCceEEEeccccccCCcccchhhh----hhhh----HhHHhhHHhhcCCCceEEecCCceEEEeec
Confidence 34655555 9999999999999984211110000 111 2223 478999999999999999999999999998
Q ss_pred CCC---eEEEeceecCcEEEEEE-cCCCCeEEEEeCCccEEEEeecCceeeeeeccccCCCceeccCccccCCCCeEEEE
Q 000731 105 DGN---ATEVVGRVEGGVRFISP-SPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPIS 180 (1325)
Q Consensus 105 ~~~---~~e~vg~~~~~I~~~aw-SPDG~~LA~~s~dgtV~l~s~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~is 180 (1325)
.-+ -+.++|.|.+.|.|++. -++.+++|+||-|+.|.+|+-. ...+..++... ...++.+ -.++.+.+.+++
T Consensus 103 ~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin--~~~~~l~~s~n-~~t~~sl-~sG~k~siYSLA 178 (735)
T KOG0308|consen 103 HKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDIN--TGTATLVASFN-NVTVNSL-GSGPKDSIYSLA 178 (735)
T ss_pred ccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEcc--Ccchhhhhhcc-ccccccC-CCCCccceeeee
Confidence 643 23588999999999999 9999999999999999998643 11111111111 0111100 015667899999
Q ss_pred EecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeecCCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeCCCc
Q 000731 181 WRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGL 260 (1325)
Q Consensus 181 WspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~~~v~~lawsPdG~~IAs~~~d~~~~~~~~V~~~e~nGl 260 (1325)
=.+.|..|+ .++ -.+.+|+||..+++-.-.+.+|..-|..|--++||+.+.|++.| ++|++|+.+ .
T Consensus 179 ~N~t~t~iv-sGg------tek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSD------gtIrlWdLg-q 244 (735)
T KOG0308|consen 179 MNQTGTIIV-SGG------TEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSD------GTIRLWDLG-Q 244 (735)
T ss_pred cCCcceEEE-ecC------cccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCC------ceEEeeecc-c
Confidence 999997777 443 24789999998999888889999999999999999999999986 579999975 4
Q ss_pred eEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCC
Q 000731 261 ERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNN 307 (1325)
Q Consensus 261 ~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~n~ 307 (1325)
++-.+++..|. ..|+++.=||+-+.+-+|+.|+ .|..=++.|+
T Consensus 245 QrCl~T~~vH~-e~VWaL~~~~sf~~vYsG~rd~---~i~~Tdl~n~ 287 (735)
T KOG0308|consen 245 QRCLATYIVHK-EGVWALQSSPSFTHVYSGGRDG---NIYRTDLRNP 287 (735)
T ss_pred cceeeeEEecc-CceEEEeeCCCcceEEecCCCC---cEEecccCCc
Confidence 45555555453 4599999999999999999998 6777777774
No 117
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.63 E-value=1.1e-14 Score=176.82 Aligned_cols=196 Identities=15% Similarity=0.144 Sum_probs=149.3
Q ss_pred CCCEEEEEEccCCCEEEEEECCCcEEEEeCCC------------------------------------C-----------
Q 000731 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDG------------------------------------N----------- 107 (1325)
Q Consensus 75 ~~~V~~v~~spdg~~La~as~dG~I~lw~~~~------------------------------------~----------- 107 (1325)
.+.|+++.||+||++||+|+.||-|+||.+.. .
T Consensus 267 ~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~s~ 346 (712)
T KOG0283|consen 267 KGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQSP 346 (712)
T ss_pred CCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccCCc
Confidence 58999999999999999999999999997633 0
Q ss_pred ---------------eEEEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeeeccccCCCceeccCccccC
Q 000731 108 ---------------ATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSS 172 (1325)
Q Consensus 108 ---------------~~e~vg~~~~~I~~~awSPDG~~LA~~s~dgtV~l~s~~~d~~~e~~l~~~~~~~~Vs~tqf~~~ 172 (1325)
.++..| |.+-|..++||-+ .+|.+++-|+||+|| .+-...+|... .|
T Consensus 347 ~~~~p~~~f~f~ekP~~ef~G-Ht~DILDlSWSKn-~fLLSSSMDKTVRLW----h~~~~~CL~~F------------~H 408 (712)
T KOG0283|consen 347 CVLLPLKAFVFSEKPFCEFKG-HTADILDLSWSKN-NFLLSSSMDKTVRLW----HPGRKECLKVF------------SH 408 (712)
T ss_pred cccCCCccccccccchhhhhc-cchhheecccccC-CeeEeccccccEEee----cCCCcceeeEE------------ec
Confidence 001244 5788999999977 689999999999775 45455666544 36
Q ss_pred CCCeEEEEEec-CCcEEEEeeccccccCCCCEEEEEECCCCceeeeecCCCCceeEEEEccCCCeEEEEecCCCCCCCCe
Q 000731 173 FSFKSPISWRG-DGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPS 251 (1325)
Q Consensus 173 ~~~i~~isWsp-DG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~~~v~~lawsPdG~~IAs~~~d~~~~~~~~ 251 (1325)
.+.|++|+|.| |-+||+ +|+.| +++|||+. ......-..-...+|++++|+|||+....|+.+ +.
T Consensus 409 ndfVTcVaFnPvDDryFi-SGSLD------~KvRiWsI-~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~------G~ 474 (712)
T KOG0283|consen 409 NDFVTCVAFNPVDDRYFI-SGSLD------GKVRLWSI-SDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFN------GY 474 (712)
T ss_pred CCeeEEEEecccCCCcEe-ecccc------cceEEeec-CcCeeEeehhhhhhheeEEeccCCceEEEEEec------cE
Confidence 67789999999 668999 78764 89999999 444444433356889999999999999999985 67
Q ss_pred EEEEeCCCceE-EEEEeccC-----CCCcEEEEEEccC-CCeeEEEEccCCCCeEEEEEee
Q 000731 252 IVFYERNGLER-SSFDINEQ-----IDSTVELLKWNCM-SDLLAAVVRFEEYDSVKICFFS 305 (1325)
Q Consensus 252 V~~~e~nGl~~-~~f~l~~~-----~~~~V~~laWSpD-g~~LAs~~~d~~~~~VqLW~~~ 305 (1325)
.+||+..|+.. ..+.+..+ ....|..+.|.|- .+.+.+.+.|. .|||+|..
T Consensus 475 C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDS---rIRI~d~~ 532 (712)
T KOG0283|consen 475 CRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDS---RIRIYDGR 532 (712)
T ss_pred EEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCC---ceEEEecc
Confidence 99999877754 33444422 1236999999864 33466667776 79999984
No 118
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.63 E-value=1.1e-14 Score=177.26 Aligned_cols=218 Identities=14% Similarity=0.064 Sum_probs=135.4
Q ss_pred CCEEEEEEccCCCEEEEEECC---CcEEEEeCCCCeEEEeceecCcEEEEEEcCCCCeEEEEe-CCccEEEEeecCceee
Q 000731 76 DSITAFDYLMEKEALIVGTSS---GLLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTT-GFGQILVMTHDWDLLY 151 (1325)
Q Consensus 76 ~~V~~v~~spdg~~La~as~d---G~I~lw~~~~~~~e~vg~~~~~I~~~awSPDG~~LA~~s-~dgtV~l~s~~~d~~~ 151 (1325)
..+.+..|||||+.|+.++.+ .+|.+||+.++....+....+...+++|||||+.||+++ .+|.+.+|..+-+.-.
T Consensus 204 ~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~ 283 (429)
T PRK01742 204 QPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGT 283 (429)
T ss_pred CccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECCCCCEEEEEEecCCcEEEEEEECCCCC
Confidence 468999999999999988754 369999998876554443445566899999999999875 5887766632211100
Q ss_pred eeeccccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECC-CCceeeeecCCCCceeEEEE
Q 000731 152 ENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERD-SGTLQASSELKAFMGAVLEW 230 (1325)
Q Consensus 152 e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~-~G~l~~t~e~~~~~v~~law 230 (1325)
...+. .+...+..++|+|||+.+++++. .++..+||+.+ .|...... .+.+ ..++|
T Consensus 284 ~~~lt--------------~~~~~~~~~~wSpDG~~i~f~s~------~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~ 340 (429)
T PRK01742 284 PSQLT--------------SGAGNNTEPSWSPDGQSILFTSD------RSGSPQVYRMSASGGGASLV-GGRG--YSAQI 340 (429)
T ss_pred eEeec--------------cCCCCcCCEEECCCCCEEEEEEC------CCCCceEEEEECCCCCeEEe-cCCC--CCccC
Confidence 01111 12234578999999998884432 23455666542 23222222 2333 45789
Q ss_pred ccCCCeEEEEecCCCCCCCCeEEEEeCCCceEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeE
Q 000731 231 MPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWY 310 (1325)
Q Consensus 231 sPdG~~IAs~~~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~n~~wy 310 (1325)
+|||+.||.++.+ .+..|+..+..... +..+ ....+++|||||+.|+.++.++ .+.+|.+-+....
T Consensus 341 SpDG~~ia~~~~~-------~i~~~Dl~~g~~~~--lt~~--~~~~~~~~sPdG~~i~~~s~~g---~~~~l~~~~~~G~ 406 (429)
T PRK01742 341 SADGKTLVMINGD-------NVVKQDLTSGSTEV--LSST--FLDESPSISPNGIMIIYSSTQG---LGKVLQLVSADGR 406 (429)
T ss_pred CCCCCEEEEEcCC-------CEEEEECCCCCeEE--ecCC--CCCCCceECCCCCEEEEEEcCC---CceEEEEEECCCC
Confidence 9999999988753 36668854322211 2111 1245788999999999999877 5666665322222
Q ss_pred EEeEEEEecCCcEEEEEccC
Q 000731 311 LKYEIRYLRRDGIRFMWHPT 330 (1325)
Q Consensus 311 lkqel~~~~~~~~~v~Wsp~ 330 (1325)
..+.+..+........|||-
T Consensus 407 ~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 407 FKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred ceEEccCCCCCCCCcccCCC
Confidence 34455433322366788874
No 119
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.63 E-value=4.6e-15 Score=162.77 Aligned_cols=278 Identities=12% Similarity=0.089 Sum_probs=192.0
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEE
Q 000731 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1325)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~V~~v~~spdg~~La~as~dG~I~l 101 (1325)
.+.|+-|| .+.+.+++-|+.|..||.+ +.+- ..+ |.+| .+.|.+++|.- +.|++||+|.||++
T Consensus 199 gVYClQYD--D~kiVSGlrDnTikiWD~n--~~~c-~~~------L~GH----tGSVLCLqyd~--rviisGSSDsTvrv 261 (499)
T KOG0281|consen 199 GVYCLQYD--DEKIVSGLRDNTIKIWDKN--SLEC-LKI------LTGH----TGSVLCLQYDE--RVIVSGSSDSTVRV 261 (499)
T ss_pred ceEEEEec--chhhhcccccCceEEeccc--cHHH-HHh------hhcC----CCcEEeeeccc--eEEEecCCCceEEE
Confidence 56666665 4678888999999999994 2221 112 4455 47899999864 59999999999999
Q ss_pred EeCCCCeE-EEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeeeccccCCCceeccCccccCCCCeEEEE
Q 000731 102 HSVDGNAT-EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPIS 180 (1325)
Q Consensus 102 w~~~~~~~-e~vg~~~~~I~~~awSPDG~~LA~~s~dgtV~l~s~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~is 180 (1325)
||.+++++ ...=+|-..|..+.||. .+++++|.|.++.+|... .|......+. ..||-..|..+.
T Consensus 262 WDv~tge~l~tlihHceaVLhlrf~n--g~mvtcSkDrsiaVWdm~-sps~it~rrV-----------LvGHrAaVNvVd 327 (499)
T KOG0281|consen 262 WDVNTGEPLNTLIHHCEAVLHLRFSN--GYMVTCSKDRSIAVWDMA-SPTDITLRRV-----------LVGHRAAVNVVD 327 (499)
T ss_pred EeccCCchhhHHhhhcceeEEEEEeC--CEEEEecCCceeEEEecc-CchHHHHHHH-----------Hhhhhhheeeec
Confidence 99999875 44445678899999994 489999999999998532 1111111111 114555667777
Q ss_pred EecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeecCCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeCC-C
Q 000731 181 WRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERN-G 259 (1325)
Q Consensus 181 WspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~~~v~~lawsPdG~~IAs~~~d~~~~~~~~V~~~e~n-G 259 (1325)
| |.+|++ ++ .+||+||+|+..+|++..+..+|...+.++.+ .|++++||+.| ++|++||.. |
T Consensus 328 f--d~kyIV-sA------SgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSD------ntIRlwdi~~G 390 (499)
T KOG0281|consen 328 F--DDKYIV-SA------SGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSD------NTIRLWDIECG 390 (499)
T ss_pred c--ccceEE-Ee------cCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCC------ceEEEEecccc
Confidence 7 456888 44 35799999999999999999998887777665 68999999986 679999953 3
Q ss_pred ceEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeEEEeEEEEecCCcEEEEEccCCCcEEEEEe
Q 000731 260 LERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWT 339 (1325)
Q Consensus 260 l~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~n~~wylkqel~~~~~~~~~v~Wsp~~~~~L~~~~ 339 (1325)
.... .|.+ ++.-|..|.|+ .+.+++|..|| +|++||..... + +.. |.+..+|....
T Consensus 391 ~cLR--vLeG-HEeLvRciRFd--~krIVSGaYDG---kikvWdl~aal----d-----pra-------~~~~~Cl~~lv 446 (499)
T KOG0281|consen 391 ACLR--VLEG-HEELVRCIRFD--NKRIVSGAYDG---KIKVWDLQAAL----D-----PRA-------PASTLCLRTLV 446 (499)
T ss_pred HHHH--HHhc-hHHhhhheeec--Cceeeeccccc---eEEEEeccccc----C-----Ccc-------cccchHHHhhh
Confidence 2111 1223 35678899984 57899999999 99999987521 0 000 11112221111
Q ss_pred -cCCcEEEEEEEEeeeeCCCeeEEEEeCCEEEEeecCCc
Q 000731 340 -LDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLS 377 (1325)
Q Consensus 340 -~~g~~~~~~~~~~~~~~d~~~v~viDG~~l~lt~l~~~ 377 (1325)
.+|. +|...+++..+++....++|++|+|-..
T Consensus 447 ~hsgR------VFrLQFD~fqIvsssHddtILiWdFl~~ 479 (499)
T KOG0281|consen 447 EHSGR------VFRLQFDEFQIISSSHDDTILIWDFLNG 479 (499)
T ss_pred hccce------eEEEeecceEEEeccCCCeEEEEEcCCC
Confidence 1232 3444455667788888889999998653
No 120
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.62 E-value=1.4e-13 Score=145.08 Aligned_cols=266 Identities=8% Similarity=-0.005 Sum_probs=192.2
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEE
Q 000731 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1325)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~V~~v~~spdg~~La~as~dG~I~l 101 (1325)
.+.+.-|+.|++-...|..|..+.+|++ ..+.. +.+ ..+| +..|.+++-+.|...+|+++.|..|.+
T Consensus 19 aV~avryN~dGnY~ltcGsdrtvrLWNp--~rg~l---ikt----Ysgh----G~EVlD~~~s~Dnskf~s~GgDk~v~v 85 (307)
T KOG0316|consen 19 AVRAVRYNVDGNYCLTCGSDRTVRLWNP--LRGAL---IKT----YSGH----GHEVLDAALSSDNSKFASCGGDKAVQV 85 (307)
T ss_pred ceEEEEEccCCCEEEEcCCCceEEeecc--cccce---eee----ecCC----CceeeeccccccccccccCCCCceEEE
Confidence 7888899999999999999999999999 34332 222 3444 458999999999999999999999999
Q ss_pred EeCCCCeE-EEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEe---ecCceeeeeeccccCCCceeccCccccCCCCeE
Q 000731 102 HSVDGNAT-EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMT---HDWDLLYENPLEELAEGFDVHEPELSSSFSFKS 177 (1325)
Q Consensus 102 w~~~~~~~-e~vg~~~~~I~~~awSPDG~~LA~~s~dgtV~l~s---~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~ 177 (1325)
||++++++ .-++.|.+.|++++|+-+...+++++-|.+|++|+ +.++|+.-. . ...++|.
T Consensus 86 wDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQil--d--------------ea~D~V~ 149 (307)
T KOG0316|consen 86 WDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQIL--D--------------EAKDGVS 149 (307)
T ss_pred EEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchh--h--------------hhcCcee
Confidence 99999876 46667799999999999999999999999999996 445554221 1 1225667
Q ss_pred EEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeecCCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeC
Q 000731 178 PISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYER 257 (1325)
Q Consensus 178 ~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~~~v~~lawsPdG~~IAs~~~d~~~~~~~~V~~~e~ 257 (1325)
+|.-+ +.-++ .++. |+++|.||.+.|++.+-. ...++++++|||||+....++-+ .++++.|+
T Consensus 150 Si~v~--~heIv-aGS~------DGtvRtydiR~G~l~sDy--~g~pit~vs~s~d~nc~La~~l~------stlrLlDk 212 (307)
T KOG0316|consen 150 SIDVA--EHEIV-AGSV------DGTVRTYDIRKGTLSSDY--FGHPITSVSFSKDGNCSLASSLD------STLRLLDK 212 (307)
T ss_pred EEEec--ccEEE-eecc------CCcEEEEEeecceeehhh--cCCcceeEEecCCCCEEEEeecc------ceeeeccc
Confidence 77654 33344 3544 589999998899876543 44568999999999987777764 57999986
Q ss_pred C-CceEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeEEEeEEEEecCC-cEEEEEccCCCcEE
Q 000731 258 N-GLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRD-GIRFMWHPTKPLQL 335 (1325)
Q Consensus 258 n-Gl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~n~~wylkqel~~~~~~-~~~v~Wsp~~~~~L 335 (1325)
. |...+.+.-.. ....=...+++..-+..+++++|+ .|.+||+-+.+-..|-+ .+..- ...+.+||..+. +
T Consensus 213 ~tGklL~sYkGhk-n~eykldc~l~qsdthV~sgSEDG---~Vy~wdLvd~~~~sk~~--~~~~v~v~dl~~hp~~~~-f 285 (307)
T KOG0316|consen 213 ETGKLLKSYKGHK-NMEYKLDCCLNQSDTHVFSGSEDG---KVYFWDLVDETQISKLS--VVSTVIVTDLSCHPTMDD-F 285 (307)
T ss_pred chhHHHHHhcccc-cceeeeeeeecccceeEEeccCCc---eEEEEEeccceeeeeec--cCCceeEEeeecccCccc-e
Confidence 4 43322221110 011122456777778899999999 89999998876433222 21111 267889998765 5
Q ss_pred EEEec
Q 000731 336 ICWTL 340 (1325)
Q Consensus 336 ~~~~~ 340 (1325)
++.+.
T Consensus 286 ~~A~~ 290 (307)
T KOG0316|consen 286 ITATG 290 (307)
T ss_pred eEecC
Confidence 55553
No 121
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.62 E-value=1.2e-13 Score=162.62 Aligned_cols=327 Identities=16% Similarity=0.152 Sum_probs=211.0
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEcc------------CCCE
Q 000731 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLM------------EKEA 89 (1325)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~V~~v~~sp------------dg~~ 89 (1325)
-+.++.||+.++.|-++-.|+.||.||+-...+-+ +.. + +--| ...|++|.-.| .+ .
T Consensus 326 D~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvg--k~~---s-~lyH----S~ciW~Ve~~p~nv~~~~~aclp~~-c 394 (1080)
T KOG1408|consen 326 DAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVG--KCS---S-MLYH----SACIWDVENLPCNVHSPTAACLPRG-C 394 (1080)
T ss_pred ceeEEEecCCCceEEEEEcCceEEEEecccccccc--cee---e-eeec----cceeeeeccccccccCcccccCCcc-c
Confidence 57788999999999999999999999994222211 000 0 0001 34555555444 33 4
Q ss_pred EEEEECCCcEEEEeCCCC---eE-----------EE--------------ece--------e--cCcEEEEEEcCCCCeE
Q 000731 90 LIVGTSSGLLLLHSVDGN---AT-----------EV--------------VGR--------V--EGGVRFISPSPDGDLL 131 (1325)
Q Consensus 90 La~as~dG~I~lw~~~~~---~~-----------e~--------------vg~--------~--~~~I~~~awSPDG~~L 131 (1325)
+.+.++||||+||+++.+ .+ .+ .|. . ..||.|++.||||+.|
T Consensus 395 F~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhL 474 (1080)
T KOG1408|consen 395 FTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHL 474 (1080)
T ss_pred eeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCccee
Confidence 678999999999998641 11 00 000 1 2579999999999999
Q ss_pred EEEeCCccEEEEeecCceeeeeeccccCCCceeccCccccCCCCeEEEEEecC---CcEEEEeeccccccCCCCEEEEEE
Q 000731 132 GVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGD---GKYFATLSEFCNSSKLHKRLKVWE 208 (1325)
Q Consensus 132 A~~s~dgtV~l~s~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspD---G~~lAtvss~d~~~~~d~~irVWd 208 (1325)
|+|..-|++.+.+.. -+.... ..-+|+..|.++.+|-- .++|| +++ .||.|.|+|
T Consensus 475 AsGDr~GnlrVy~Lq--~l~~~~-------------~~eAHesEilcLeyS~p~~~~kLLA-Sas------rdRlIHV~D 532 (1080)
T KOG1408|consen 475 ASGDRGGNLRVYDLQ--ELEYTC-------------FMEAHESEILCLEYSFPVLTNKLLA-SAS------RDRLIHVYD 532 (1080)
T ss_pred cccCccCceEEEEeh--hhhhhh-------------heecccceeEEEeecCchhhhHhhh-hcc------CCceEEEEe
Confidence 999999999875421 011110 01156778889988742 36788 553 469999999
Q ss_pred CC-CCceeeeecCCCCceeEEEEccCC--CeEEEEecCCCCCCCCeEEEEeCCCceEEEEEeccC---CCCcEEEEEEcc
Q 000731 209 RD-SGTLQASSELKAFMGAVLEWMPSG--ANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQ---IDSTVELLKWNC 282 (1325)
Q Consensus 209 ~~-~G~l~~t~e~~~~~v~~lawsPdG--~~IAs~~~d~~~~~~~~V~~~e~nGl~~~~f~l~~~---~~~~V~~laWSp 282 (1325)
.. +=.++.++.+|...+++|-|--+| ....+++.|+. ...+.+.+.|.- ..|. +.+ ....+++++--|
T Consensus 533 v~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADks----imFr~~qk~~~g-~~f~-r~t~t~~ktTlYDm~Vdp 606 (1080)
T KOG1408|consen 533 VKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKS----IMFRVNQKASSG-RLFP-RHTQTLSKTTLYDMAVDP 606 (1080)
T ss_pred cccccchhhhhcccccceeEEEEeecCCceEEEeccCchh----hheehhccccCc-eecc-ccccccccceEEEeeeCC
Confidence 73 334677888899999999999888 44555655532 111112222210 1121 111 124689999999
Q ss_pred CCCeeEEEEccCCCCeEEEEEeeCCeeEEEeEEEEecC-Cc--EEEEEccCCCcEEEEEecCCcEEEEEEEEeeeeCCCe
Q 000731 283 MSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRR-DG--IRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENS 359 (1325)
Q Consensus 283 Dg~~LAs~~~d~~~~~VqLW~~~n~~wylkqel~~~~~-~~--~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~ 359 (1325)
..+++++++.|+ .|+|+++.+.+ +++.+..++. ++ ..+.-+|.+-+ |+..+.|-++
T Consensus 607 ~~k~v~t~cQDr---nirif~i~sgK--q~k~FKgs~~~eG~lIKv~lDPSgiY-~atScsdktl--------------- 665 (1080)
T KOG1408|consen 607 TSKLVVTVCQDR---NIRIFDIESGK--QVKSFKGSRDHEGDLIKVILDPSGIY-LATSCSDKTL--------------- 665 (1080)
T ss_pred CcceEEEEeccc---ceEEEeccccc--eeeeecccccCCCceEEEEECCCccE-EEEeecCCce---------------
Confidence 999999999999 89999999874 3344444332 22 55666665543 3333333333
Q ss_pred eEEEEeCCEEEEeecCCcCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCC
Q 000731 360 TALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPA 424 (1325)
Q Consensus 360 ~v~viDG~~l~lt~l~~~~vPpPm~~~~l~~~~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~~~~ 424 (1325)
-+.+|...-.-.-| ..|...|+.|-|++|- ++|.+++.||.|.+|+++.
T Consensus 666 ----------~~~Df~sgEcvA~m----~GHsE~VTG~kF~nDC--kHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 666 ----------CFVDFVSGECVAQM----TGHSEAVTGVKFLNDC--KHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred ----------EEEEeccchhhhhh----cCcchheeeeeecccc--hhheeecCCceEEEEECch
Confidence 33333221111112 3588999999999999 9999999999999999975
No 122
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.62 E-value=1.7e-14 Score=153.58 Aligned_cols=236 Identities=14% Similarity=0.107 Sum_probs=170.2
Q ss_pred CCCEEEEEEccCC-CEEEEEECCCcEEEEeCCC--CeEEEeceecCcEEEEEEcCC-CCeEEEEeCCccEEEEeecCcee
Q 000731 75 GDSITAFDYLMEK-EALIVGTSSGLLLLHSVDG--NATEVVGRVEGGVRFISPSPD-GDLLGVTTGFGQILVMTHDWDLL 150 (1325)
Q Consensus 75 ~~~V~~v~~spdg-~~La~as~dG~I~lw~~~~--~~~e~vg~~~~~I~~~awSPD-G~~LA~~s~dgtV~l~s~~~d~~ 150 (1325)
.|.+-+|+|++.- .++++++.||.++|||..- +.+.+...|...|.++.|++- ++.+++.|-|+||++|. +.
T Consensus 60 ~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~----~~ 135 (311)
T KOG0277|consen 60 EDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWD----PN 135 (311)
T ss_pred ccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeec----CC
Confidence 5789999999976 4677889999999999532 345567778999999999984 66777779999998874 33
Q ss_pred eeeeccccCCCceeccCccccCCCCeEEEEEecC-CcEEEEeeccccccCCCCEEEEEECC-CCceeeeecCCCCceeEE
Q 000731 151 YENPLEELAEGFDVHEPELSSSFSFKSPISWRGD-GKYFATLSEFCNSSKLHKRLKVWERD-SGTLQASSELKAFMGAVL 228 (1325)
Q Consensus 151 ~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspD-G~~lAtvss~d~~~~~d~~irVWd~~-~G~l~~t~e~~~~~v~~l 228 (1325)
....+ ..|.+|.+.|.+..|+|- +..||++| +|++.|+||.+ .|+.+. .+.|+.-+-+.
T Consensus 136 r~~Sv-----------~Tf~gh~~~Iy~a~~sp~~~nlfas~S-------gd~~l~lwdvr~~gk~~~-i~ah~~Eil~c 196 (311)
T KOG0277|consen 136 RPNSV-----------QTFNGHNSCIYQAAFSPHIPNLFASAS-------GDGTLRLWDVRSPGKFMS-IEAHNSEILCC 196 (311)
T ss_pred CCcce-----------EeecCCccEEEEEecCCCCCCeEEEcc-------CCceEEEEEecCCCceeE-EEeccceeEee
Confidence 33322 236688899999999994 67888433 47999999964 577766 67788778899
Q ss_pred EEccCC-CeEEEEecCCCCCCCCeEEEEeCCCceEEEEEeccCCCCcEEEEEEccCC-CeeEEEEccCCCCeEEEEEeeC
Q 000731 229 EWMPSG-ANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMS-DLLAAVVRFEEYDSVKICFFSN 306 (1325)
Q Consensus 229 awsPdG-~~IAs~~~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg-~~LAs~~~d~~~~~VqLW~~~n 306 (1325)
.|+.-. +.+|+++.| +.|+.||.-.++.--|.|.++ +..|..|+|||-. .+||+++.|. |++||+...
T Consensus 197 dw~ky~~~vl~Tg~vd------~~vr~wDir~~r~pl~eL~gh-~~AVRkvk~Sph~~~lLaSasYDm---T~riw~~~~ 266 (311)
T KOG0277|consen 197 DWSKYNHNVLATGGVD------NLVRGWDIRNLRTPLFELNGH-GLAVRKVKFSPHHASLLASASYDM---TVRIWDPER 266 (311)
T ss_pred cccccCCcEEEecCCC------ceEEEEehhhccccceeecCC-ceEEEEEecCcchhhHhhhccccc---eEEeccccc
Confidence 998854 567887775 579999966566556666544 5679999999964 6899999999 999999763
Q ss_pred CeeEEEeEEEEecCCcEEEEEccCCCcEEEEEecCCcE
Q 000731 307 NHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQI 344 (1325)
Q Consensus 307 ~~wylkqel~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~ 344 (1325)
.+- ++....-|..-...+.|++-.+..++....|+.+
T Consensus 267 ~ds-~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l 303 (311)
T KOG0277|consen 267 QDS-AIETVDHHTEFVCGLDWSLFDPGQVASTGWDELL 303 (311)
T ss_pred chh-hhhhhhccceEEeccccccccCceeeecccccce
Confidence 321 1111111111124567887766655544444433
No 123
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.61 E-value=4.7e-15 Score=162.70 Aligned_cols=272 Identities=15% Similarity=0.195 Sum_probs=187.2
Q ss_pred CCCEEEEEEccCCCEEEEEECCCcEEEEeCCCCeEE-EeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeee
Q 000731 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATE-VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYEN 153 (1325)
Q Consensus 75 ~~~V~~v~~spdg~~La~as~dG~I~lw~~~~~~~e-~vg~~~~~I~~~awSPDG~~LA~~s~dgtV~l~s~~~d~~~e~ 153 (1325)
...|.+++| |.+.+++|+.|.||++||.++..+. ++-.|.+.|.|+.+ |.+.|++||.|.||++|+ .-++.
T Consensus 197 skgVYClQY--DD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqy--d~rviisGSSDsTvrvWD----v~tge 268 (499)
T KOG0281|consen 197 SKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQY--DERVIVSGSSDSTVRVWD----VNTGE 268 (499)
T ss_pred CCceEEEEe--cchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeec--cceEEEecCCCceEEEEe----ccCCc
Confidence 467999988 4567999999999999999986553 44446999999988 567999999999998874 33444
Q ss_pred eccccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCC---ceeeeecCCCCceeEEEE
Q 000731 154 PLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSG---TLQASSELKAFMGAVLEW 230 (1325)
Q Consensus 154 ~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G---~l~~t~e~~~~~v~~law 230 (1325)
++.+.- +|.+.|..+.|+. | |++|+| .|++++|||...- .+...+-+|...|+.+.|
T Consensus 269 ~l~tli-----------hHceaVLhlrf~n-g-~mvtcS-------kDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdf 328 (499)
T KOG0281|consen 269 PLNTLI-----------HHCEAVLHLRFSN-G-YMVTCS-------KDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF 328 (499)
T ss_pred hhhHHh-----------hhcceeEEEEEeC-C-EEEEec-------CCceeEEEeccCchHHHHHHHHhhhhhheeeecc
Confidence 443322 4556678888873 4 556343 4699999998432 233346678888999998
Q ss_pred ccCCCeEEEEecCCCCCCCCeEEEEeCCCceEEEEE--eccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCe
Q 000731 231 MPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFD--INEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNH 308 (1325)
Q Consensus 231 sPdG~~IAs~~~d~~~~~~~~V~~~e~nGl~~~~f~--l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~n~~ 308 (1325)
+. ++|+|++.| .+|++|+.. .++|. +.++ ...|-.+.+ .|+++++|++|. +|+||+...+.
T Consensus 329 d~--kyIVsASgD------RTikvW~~s---t~efvRtl~gH-kRGIAClQY--r~rlvVSGSSDn---tIRlwdi~~G~ 391 (499)
T KOG0281|consen 329 DD--KYIVSASGD------RTIKVWSTS---TCEFVRTLNGH-KRGIACLQY--RDRLVVSGSSDN---TIRLWDIECGA 391 (499)
T ss_pred cc--ceEEEecCC------ceEEEEecc---ceeeehhhhcc-cccceehhc--cCeEEEecCCCc---eEEEEeccccH
Confidence 54 599999986 579999965 35553 3233 334666654 588999999999 99999987654
Q ss_pred eEEEeEEEEecCCcEEEEEccCCCcEEEEEecCCcEEEEEEEEeeeeCCCeeEEEEeCCEEEEeecCCcCCCC----Cce
Q 000731 309 WYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPP----PMY 384 (1325)
Q Consensus 309 wylkqel~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDG~~l~lt~l~~~~vPp----Pm~ 384 (1325)
.. ..+.+|..-..++.|+.. ++..+.- || +|++|+|..+.-|. .+|
T Consensus 392 cL--RvLeGHEeLvRciRFd~k---rIVSGaY------------------------DG-kikvWdl~aaldpra~~~~~C 441 (499)
T KOG0281|consen 392 CL--RVLEGHEELVRCIRFDNK---RIVSGAY------------------------DG-KIKVWDLQAALDPRAPASTLC 441 (499)
T ss_pred HH--HHHhchHHhhhheeecCc---eeeeccc------------------------cc-eEEEEecccccCCcccccchH
Confidence 21 223333222245555532 1222222 22 56677766554442 356
Q ss_pred eeee-cCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCC
Q 000731 385 LFSL-KFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAP 425 (1325)
Q Consensus 385 ~~~l-~~~~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~~~~~ 425 (1325)
..++ +|.+.|..+-|. . ..+.+.+.|.+|-+|++.+.
T Consensus 442 l~~lv~hsgRVFrLQFD--~--fqIvsssHddtILiWdFl~~ 479 (499)
T KOG0281|consen 442 LRTLVEHSGRVFRLQFD--E--FQIISSSHDDTILIWDFLNG 479 (499)
T ss_pred HHhhhhccceeEEEeec--c--eEEEeccCCCeEEEEEcCCC
Confidence 6666 688899998884 3 57888899999999999753
No 124
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.60 E-value=1.3e-13 Score=150.32 Aligned_cols=257 Identities=13% Similarity=0.144 Sum_probs=182.4
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEcc--CCCEEEEEECCCcE
Q 000731 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLM--EKEALIVGTSSGLL 99 (1325)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~V~~v~~sp--dg~~La~as~dG~I 99 (1325)
.+.+.+||.-|+++..||.|..+..||.+ ...+.|.++ +.-+.| ++.|+.|.|.+ =|+.+|+++.|+++
T Consensus 15 lihdVs~D~~GRRmAtCSsDq~vkI~d~~--~~s~~W~~T---s~Wrah----~~Si~rV~WAhPEfGqvvA~cS~Drtv 85 (361)
T KOG2445|consen 15 LIHDVSFDFYGRRMATCSSDQTVKIWDST--SDSGTWSCT---SSWRAH----DGSIWRVVWAHPEFGQVVATCSYDRTV 85 (361)
T ss_pred eeeeeeecccCceeeeccCCCcEEEEecc--CCCCceEEe---eeEEec----CCcEEEEEecCccccceEEEEecCCce
Confidence 78999999999999999999999999973 333445543 123334 57899999965 38999999999999
Q ss_pred EEEeCCC-------CeE---E-EeceecCcEEEEEEcCC--CCeEEEEeCCccEEEEe-------ecCceeeeeeccccC
Q 000731 100 LLHSVDG-------NAT---E-VVGRVEGGVRFISPSPD--GDLLGVTTGFGQILVMT-------HDWDLLYENPLEELA 159 (1325)
Q Consensus 100 ~lw~~~~-------~~~---e-~vg~~~~~I~~~awSPD--G~~LA~~s~dgtV~l~s-------~~~d~~~e~~l~~~~ 159 (1325)
.||..+. .+. . ++.. .+.|+.+.|.|- |=.||+++.||+|+|+. +.|.++.|+..-..+
T Consensus 86 ~iWEE~~~~~~~~~~~Wv~~ttl~Ds-rssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~p 164 (361)
T KOG2445|consen 86 SIWEEQEKSEEAHGRRWVRRTTLVDS-RSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDP 164 (361)
T ss_pred eeeeecccccccccceeEEEEEeecC-CcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCC
Confidence 9998632 121 1 2222 567999999997 77899999999999864 346666666543332
Q ss_pred CCceeccCccccCCCCeEEEEEecCC---cEEEEeeccccccCCCCEEEEEECCCC--ceee--eecCCCCceeEEEEcc
Q 000731 160 EGFDVHEPELSSSFSFKSPISWRGDG---KYFATLSEFCNSSKLHKRLKVWERDSG--TLQA--SSELKAFMGAVLEWMP 232 (1325)
Q Consensus 160 ~~~~Vs~tqf~~~~~~i~~isWspDG---~~lAtvss~d~~~~~d~~irVWd~~~G--~l~~--t~e~~~~~v~~lawsP 232 (1325)
.++ +...-.+++|+|-- ++|| +++.+. +..-+.++||...++ +.+. ++..|..+|.+|+|.|
T Consensus 165 p~~---------~~~~~~CvsWn~sr~~~p~iA-vgs~e~-a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAP 233 (361)
T KOG2445|consen 165 PGK---------NKQPCFCVSWNPSRMHEPLIA-VGSDED-APHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAP 233 (361)
T ss_pred ccc---------ccCcceEEeeccccccCceEE-EEcccC-CccccceEEEEecCCcceeeeehhcCCCCCcceeeeecc
Confidence 111 12345799999643 4888 876542 134468999987543 2333 4557889999999999
Q ss_pred C-C---CeEEEEecCCCCCCCCeEEEEeCCCce-------------EEEEEec-----cCCCCcEEEEEEccCCCeeEEE
Q 000731 233 S-G---ANIAAVYDRKSENKCPSIVFYERNGLE-------------RSSFDIN-----EQIDSTVELLKWNCMSDLLAAV 290 (1325)
Q Consensus 233 d-G---~~IAs~~~d~~~~~~~~V~~~e~nGl~-------------~~~f~l~-----~~~~~~V~~laWSpDg~~LAs~ 290 (1325)
+ | .+||+++.| + |++|...+.+ .+.+.+. ..|.+.|+.+.||--|++|++.
T Consensus 234 n~Gr~y~~lAvA~kD------g-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsSt 306 (361)
T KOG2445|consen 234 NIGRSYHLLAVATKD------G-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSST 306 (361)
T ss_pred ccCCceeeEEEeecC------c-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeec
Confidence 7 3 479999875 2 8888644322 1112221 2345689999999999999999
Q ss_pred EccCCCCeEEEEEee-CCee
Q 000731 291 VRFEEYDSVKICFFS-NNHW 309 (1325)
Q Consensus 291 ~~d~~~~~VqLW~~~-n~~w 309 (1325)
+.|| .||||..+ |..|
T Consensus 307 GdDG---~VRLWkany~n~~ 323 (361)
T KOG2445|consen 307 GDDG---CVRLWKANYNNLW 323 (361)
T ss_pred CCCc---eeeehhhhhhhhh
Confidence 9999 99999975 4444
No 125
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.60 E-value=5.3e-10 Score=132.34 Aligned_cols=205 Identities=12% Similarity=0.150 Sum_probs=139.5
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEE
Q 000731 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1325)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~V~~v~~spdg~~La~as~dG~I~l 101 (1325)
.+....|+-....|.+...++.|+.|-+ +.+. |--. +. .-...+.|.++.|..||..+|++.+||.|++
T Consensus 73 sV~vvTWNe~~QKLTtSDt~GlIiVWml--ykgs--W~EE-----Mi--NnRnKSvV~SmsWn~dG~kIcIvYeDGavIV 141 (1189)
T KOG2041|consen 73 SVMVVTWNENNQKLTTSDTSGLIIVWML--YKGS--WCEE-----MI--NNRNKSVVVSMSWNLDGTKICIVYEDGAVIV 141 (1189)
T ss_pred eEEEEEeccccccccccCCCceEEEEee--eccc--HHHH-----Hh--hCcCccEEEEEEEcCCCcEEEEEEccCCEEE
Confidence 6777889988898988888999999988 5443 4211 10 0111356999999999999999999999999
Q ss_pred EeCCCCeE---EEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCcee----------------------eeeecc
Q 000731 102 HSVDGNAT---EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLL----------------------YENPLE 156 (1325)
Q Consensus 102 w~~~~~~~---e~vg~~~~~I~~~awSPDG~~LA~~s~dgtV~l~s~~~d~~----------------------~e~~l~ 156 (1325)
=++++.++ +..|.+ ...+-||||.+.+..+-..|.+.+.+..++.. .+..+.
T Consensus 142 GsvdGNRIwgKeLkg~~---l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~ 218 (1189)
T KOG2041|consen 142 GSVDGNRIWGKELKGQL---LAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWN 218 (1189)
T ss_pred Eeeccceecchhcchhe---ccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeec
Confidence 88888765 344443 23567999999988888888887765432211 111111
Q ss_pred ccC-----CCceec-----cC--ccc-----------cCCCCeEEEEEecCCcEEEEeeccccc---cCCCCEEEEEECC
Q 000731 157 ELA-----EGFDVH-----EP--ELS-----------SSFSFKSPISWRGDGKYFATLSEFCNS---SKLHKRLKVWERD 210 (1325)
Q Consensus 157 ~~~-----~~~~Vs-----~t--qf~-----------~~~~~i~~isWspDG~~lAtvss~d~~---~~~d~~irVWd~~ 210 (1325)
+.. ...++- .. |.- ...-.++.+.|+++|..|| +.+.+.. +...+.|..|.+
T Consensus 219 ~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dtgm~~vgakWnh~G~vLA-vcG~~~da~~~~d~n~v~Fysp- 296 (1189)
T KOG2041|consen 219 TGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDTGMKIVGAKWNHNGAVLA-VCGNDSDADEPTDSNKVHFYSP- 296 (1189)
T ss_pred cCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEecccEeecceecCCCcEEE-EccCcccccCccccceEEEecc-
Confidence 111 000000 00 000 1113467889999999999 6654321 123358999999
Q ss_pred CCceeeeecCCCCceeEEEEccCCCeEEEEec
Q 000731 211 SGTLQASSELKAFMGAVLEWMPSGANIAAVYD 242 (1325)
Q Consensus 211 ~G~l~~t~e~~~~~v~~lawsPdG~~IAs~~~ 242 (1325)
-|+...++.....-+++++|--.|-.||-+-+
T Consensus 297 ~G~i~gtlkvpg~~It~lsWEg~gLriA~Avd 328 (1189)
T KOG2041|consen 297 YGHIVGTLKVPGSCITGLSWEGTGLRIAIAVD 328 (1189)
T ss_pred chhheEEEecCCceeeeeEEcCCceEEEEEec
Confidence 99999999877788999999999999987754
No 126
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.59 E-value=2.4e-14 Score=168.29 Aligned_cols=273 Identities=14% Similarity=0.108 Sum_probs=182.4
Q ss_pred cCCCEEEEEECCCcEEEEeCCC--Ce-----EEEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeeeccc
Q 000731 85 MEKEALIVGTSSGLLLLHSVDG--NA-----TEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEE 157 (1325)
Q Consensus 85 pdg~~La~as~dG~I~lw~~~~--~~-----~e~vg~~~~~I~~~awSPDG~~LA~~s~dgtV~l~s~~~d~~~e~~l~~ 157 (1325)
|.+++|.+|+.||.|++|+... +. +....+|.++|+.++.--+|+.|+++|.|-||++|+..-+. ..+...
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~--~~c~st 112 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDN--TFCMST 112 (735)
T ss_pred CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCc--chhHhh
Confidence 4567799999999999999854 21 22456789999999999999999999999999998643221 122222
Q ss_pred cCCCceeccCccccCCCCeEEEEE-ecCCcEEEEeeccccccCCCCEEEEEECCCC--ceeeeec---------CCCCce
Q 000731 158 LAEGFDVHEPELSSSFSFKSPISW-RGDGKYFATLSEFCNSSKLHKRLKVWERDSG--TLQASSE---------LKAFMG 225 (1325)
Q Consensus 158 ~~~~~~Vs~tqf~~~~~~i~~isW-spDG~~lAtvss~d~~~~~d~~irVWd~~~G--~l~~t~e---------~~~~~v 225 (1325)
. +.|++.|.+++. -++...+| +++. |+.|.|||.++| ++..+++ ++...+
T Consensus 113 i-----------r~H~DYVkcla~~ak~~~lva-SgGL------D~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~si 174 (735)
T KOG0308|consen 113 I-----------RTHKDYVKCLAYIAKNNELVA-SGGL------DRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSI 174 (735)
T ss_pred h-----------hcccchheeeeecccCceeEE-ecCC------CccEEEEEccCcchhhhhhccccccccCCCCCccce
Confidence 2 256788899999 78888887 6654 589999999877 3333322 345567
Q ss_pred eEEEEccCCCeEEEEecCCCCCCCCeEEEEeC-CCceEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEe
Q 000731 226 AVLEWMPSGANIAAVYDRKSENKCPSIVFYER-NGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFF 304 (1325)
Q Consensus 226 ~~lawsPdG~~IAs~~~d~~~~~~~~V~~~e~-nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~ 304 (1325)
.++|-+|.|..|++|+-. ..++||+. .+.+. ..|++| +..|..|--++||+.+.++++|+ +|+||++
T Consensus 175 YSLA~N~t~t~ivsGgte------k~lr~wDprt~~ki--mkLrGH-TdNVr~ll~~dDGt~~ls~sSDg---tIrlWdL 242 (735)
T KOG0308|consen 175 YSLAMNQTGTIIVSGGTE------KDLRLWDPRTCKKI--MKLRGH-TDNVRVLLVNDDGTRLLSASSDG---TIRLWDL 242 (735)
T ss_pred eeeecCCcceEEEecCcc------cceEEeccccccce--eeeecc-ccceEEEEEcCCCCeEeecCCCc---eEEeeec
Confidence 999999999999998874 57999994 33332 345544 67899999999999999999999 9999999
Q ss_pred eCCeeEEEeEEEEecCCcEEEEEccCCCcEEEEEecCCcEEEEEEEEeeeeCCCeeEEEEeCCEEEEeecCCcCCCCCce
Q 000731 305 SNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMY 384 (1325)
Q Consensus 305 ~n~~wylkqel~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDG~~l~lt~l~~~~vPpPm~ 384 (1325)
+..++. +++..|.+..+.+.=+|.= ..++.+..+| .|..|+++.. --+
T Consensus 243 gqQrCl--~T~~vH~e~VWaL~~~~sf-~~vYsG~rd~-------------------------~i~~Tdl~n~----~~~ 290 (735)
T KOG0308|consen 243 GQQRCL--ATYIVHKEGVWALQSSPSF-THVYSGGRDG-------------------------NIYRTDLRNP----AKS 290 (735)
T ss_pred ccccee--eeEEeccCceEEEeeCCCc-ceEEecCCCC-------------------------cEEecccCCc----hhh
Confidence 876652 3344433222222111111 1122222222 3445555431 011
Q ss_pred eeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCC
Q 000731 385 LFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLP 423 (1325)
Q Consensus 385 ~~~l~~~~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~~~ 423 (1325)
..-.+-+.+|..+..+-+. +.+=+++.|+.|+-|...
T Consensus 291 tlick~daPv~~l~~~~~~--~~~WvtTtds~I~rW~~~ 327 (735)
T KOG0308|consen 291 TLICKEDAPVLKLHLHEHD--NSVWVTTTDSSIKRWKLE 327 (735)
T ss_pred eEeecCCCchhhhhhcccc--CCceeeeccccceecCCc
Confidence 1111335566666655433 345667788889888764
No 127
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.59 E-value=1.4e-12 Score=136.17 Aligned_cols=218 Identities=17% Similarity=0.254 Sum_probs=152.1
Q ss_pred CCCEEEEEEccCCCEEEEEECCCcEEEEeCC--CC-----eEEEeceecCcEEEEEEcCC----CCeEEEEeCCccEEEE
Q 000731 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVD--GN-----ATEVVGRVEGGVRFISPSPD----GDLLGVTTGFGQILVM 143 (1325)
Q Consensus 75 ~~~V~~v~~spdg~~La~as~dG~I~lw~~~--~~-----~~e~vg~~~~~I~~~awSPD----G~~LA~~s~dgtV~l~ 143 (1325)
.+.|.+.+|||+|+.||+|+.|.+|++...+ +. .+| +.-|++.|..++|=-| |.+||+++. |..+++
T Consensus 89 kgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle-~nmhdgtirdl~fld~~~s~~~il~s~ga-gdc~iy 166 (350)
T KOG0641|consen 89 KGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLE-FNMHDGTIRDLAFLDDPESGGAILASAGA-GDCKIY 166 (350)
T ss_pred CccEEEEEecCccCeEEecCCCceEEEEecccccccccCccee-eeecCCceeeeEEecCCCcCceEEEecCC-CcceEE
Confidence 4789999999999999999999999995443 32 233 3347899999999443 667887753 233333
Q ss_pred eecCceeeeeeccccCCCceeccCccccCCCCeEEE-EEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeecC--
Q 000731 144 THDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPI-SWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSEL-- 220 (1325)
Q Consensus 144 s~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~i-sWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~-- 220 (1325)
.. |.-.++.++... +|.+.|..+ +| +|.+|| +++ .|.+||.||.+-..+..+...
T Consensus 167 ~t--dc~~g~~~~a~s-----------ghtghilalysw--n~~m~~-sgs------qdktirfwdlrv~~~v~~l~~~~ 224 (350)
T KOG0641|consen 167 IT--DCGRGQGFHALS-----------GHTGHILALYSW--NGAMFA-SGS------QDKTIRFWDLRVNSCVNTLDNDF 224 (350)
T ss_pred Ee--ecCCCCcceeec-----------CCcccEEEEEEe--cCcEEE-ccC------CCceEEEEeeeccceeeeccCcc
Confidence 22 333444444433 555555554 56 478898 664 468999999866666665432
Q ss_pred CC-----CceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeCCCce-EEEEEeccCCCCcEEEEEEccCCCeeEEEEccC
Q 000731 221 KA-----FMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLE-RSSFDINEQIDSTVELLKWNCMSDLLAAVVRFE 294 (1325)
Q Consensus 221 ~~-----~~v~~lawsPdG~~IAs~~~d~~~~~~~~V~~~e~nGl~-~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~ 294 (1325)
|+ ..|.+++--|+|+++|++..|. .-.+|+..|.+ .+.| -|+...|.++.|||.--+|.+++.|.
T Consensus 225 ~~~glessavaav~vdpsgrll~sg~~ds------sc~lydirg~r~iq~f---~phsadir~vrfsp~a~yllt~syd~ 295 (350)
T KOG0641|consen 225 HDGGLESSAVAAVAVDPSGRLLASGHADS------SCMLYDIRGGRMIQRF---HPHSADIRCVRFSPGAHYLLTCSYDM 295 (350)
T ss_pred cCCCcccceeEEEEECCCcceeeeccCCC------ceEEEEeeCCceeeee---CCCccceeEEEeCCCceEEEEecccc
Confidence 22 3478999999999999999864 47789865544 3323 24567899999999999999999999
Q ss_pred CCCeEEEEEeeCCeeEEEeEEE----EecCCc-EEEEEccCC
Q 000731 295 EYDSVKICFFSNNHWYLKYEIR----YLRRDG-IRFMWHPTK 331 (1325)
Q Consensus 295 ~~~~VqLW~~~n~~wylkqel~----~~~~~~-~~v~Wsp~~ 331 (1325)
.|++=|+..- |.+++. ..+++. ..+.|||+.
T Consensus 296 ---~ikltdlqgd---la~el~~~vv~ehkdk~i~~rwh~~d 331 (350)
T KOG0641|consen 296 ---KIKLTDLQGD---LAHELPIMVVAEHKDKAIQCRWHPQD 331 (350)
T ss_pred ---eEEEeecccc---hhhcCceEEEEeccCceEEEEecCcc
Confidence 8999998752 333332 222344 777888865
No 128
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.59 E-value=3e-14 Score=151.10 Aligned_cols=286 Identities=13% Similarity=0.088 Sum_probs=201.0
Q ss_pred EEeceecCcEEEEEEc---CCCCeEEEEeCCccEEEEeecCceeeeeeccccCCCceeccCccccCCCCeEEEEEecCCc
Q 000731 110 EVVGRVEGGVRFISPS---PDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGK 186 (1325)
Q Consensus 110 e~vg~~~~~I~~~awS---PDG~~LA~~s~dgtV~l~s~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~ 186 (1325)
.+-| |...|..++|| |||=.|.+++.|+.=.+ |.+|. +.+| ..|-+|.+.|++.+-..+..
T Consensus 9 ~c~g-htrpvvdl~~s~itp~g~flisa~kd~~pml--r~g~t-----------gdwi--gtfeghkgavw~~~l~~na~ 72 (334)
T KOG0278|consen 9 TCHG-HTRPVVDLAFSPITPDGYFLISASKDGKPML--RNGDT-----------GDWI--GTFEGHKGAVWSATLNKNAT 72 (334)
T ss_pred EEcC-CCcceeEEeccCCCCCceEEEEeccCCCchh--ccCCC-----------CCcE--EeeeccCcceeeeecCchhh
Confidence 4566 48899999998 58999999999987533 43331 1222 24557888888888877765
Q ss_pred EEEEeeccccccCCCCEEEEEECCCCceeeeecCCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeCCCceEEEEE
Q 000731 187 YFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFD 266 (1325)
Q Consensus 187 ~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~~~v~~lawsPdG~~IAs~~~d~~~~~~~~V~~~e~nGl~~~~f~ 266 (1325)
.-| +++ .|-+-||||.-+|..+.+++ |...|.+++|+.|.+.|.+|+.+ .-+++|+.|-..-.--.
T Consensus 73 ~aa-saa------adftakvw~a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~e------kllrvfdln~p~App~E 138 (334)
T KOG0278|consen 73 RAA-SAA------ADFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQE------KLLRVFDLNRPKAPPKE 138 (334)
T ss_pred hhh-hhc------ccchhhhhhhhhhhhhhhhh-hhheeeeEEecccchhhhccchH------HHhhhhhccCCCCCchh
Confidence 555 544 35788999998999888887 77789999999999999999875 35888987743211001
Q ss_pred eccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeEEEeEEEEecCCcEEEEEccCCCcEEEEEecCCcEEE
Q 000731 267 INEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITT 346 (1325)
Q Consensus 267 l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~n~~wylkqel~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~ 346 (1325)
+ ..+.+.|..+-|-..-+.+.+.+.|+ +|||||..+.. ..|.|.+.. .+.++--|+++. +
T Consensus 139 ~-~ghtg~Ir~v~wc~eD~~iLSSadd~---tVRLWD~rTgt--~v~sL~~~s-~VtSlEvs~dG~-----------i-- 198 (334)
T KOG0278|consen 139 I-SGHTGGIRTVLWCHEDKCILSSADDK---TVRLWDHRTGT--EVQSLEFNS-PVTSLEVSQDGR-----------I-- 198 (334)
T ss_pred h-cCCCCcceeEEEeccCceEEeeccCC---ceEEEEeccCc--EEEEEecCC-CCcceeeccCCC-----------E--
Confidence 1 12357899999987666666668888 99999988764 345665521 124444444433 2
Q ss_pred EEEEEeeeeCCCeeEEEEeCCEEEEeecCCcCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCCC
Q 000731 347 YNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPD 426 (1325)
Q Consensus 347 ~~~~~~~~~~d~~~v~viDG~~l~lt~l~~~~vPpPm~~~~l~~~~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~~~~~~ 426 (1325)
+...+|+.|+.|+-..-.+ .+....|.+|.+.+.+|+. ..+++++.|+.++-||..+..
T Consensus 199 --------------lTia~gssV~Fwdaksf~~-----lKs~k~P~nV~SASL~P~k--~~fVaGged~~~~kfDy~Tge 257 (334)
T KOG0278|consen 199 --------------LTIAYGSSVKFWDAKSFGL-----LKSYKMPCNVESASLHPKK--EFFVAGGEDFKVYKFDYNTGE 257 (334)
T ss_pred --------------EEEecCceeEEeccccccc-----eeeccCccccccccccCCC--ceEEecCcceEEEEEeccCCc
Confidence 2223455555554321100 2344568899999999998 899999999999999998765
Q ss_pred ccccccCCceeEeeeccccccCcEEEEEEecCCeEEEEEecCCCCceEEEEee
Q 000731 427 MLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGAT 479 (1325)
Q Consensus 427 ~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~~~~~~~~~~~~ 479 (1325)
..+.. .+++.+.|.++.|+|||.+.|+++.+ .++.+|+..
T Consensus 258 Ei~~~-----------nkgh~gpVhcVrFSPdGE~yAsGSED--GTirlWQt~ 297 (334)
T KOG0278|consen 258 EIGSY-----------NKGHFGPVHCVRFSPDGELYASGSED--GTIRLWQTT 297 (334)
T ss_pred eeeec-----------ccCCCCceEEEEECCCCceeeccCCC--ceEEEEEec
Confidence 54221 13466789999999999999998866 689999875
No 129
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.58 E-value=4.9e-14 Score=160.95 Aligned_cols=265 Identities=12% Similarity=0.161 Sum_probs=185.5
Q ss_pred CCCCCCEEEEEEccCCC-EEEEEECCCcEEEEeCCC--------C----eEEEeceecCcEEEEEEcCCCC-eEEEEeCC
Q 000731 72 LEPGDSITAFDYLMEKE-ALIVGTSSGLLLLHSVDG--------N----ATEVVGRVEGGVRFISPSPDGD-LLGVTTGF 137 (1325)
Q Consensus 72 ~~~~~~V~~v~~spdg~-~La~as~dG~I~lw~~~~--------~----~~e~vg~~~~~I~~~awSPDG~-~LA~~s~d 137 (1325)
+...+.|..+.|.|... .+|+.+.+|+|.+||... + .+.+.|| .+.=..++||+..+ .|++++.|
T Consensus 121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH-~~eg~glsWn~~~~g~Lls~~~d 199 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGH-EKEGYGLSWNRQQEGTLLSGSDD 199 (422)
T ss_pred ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEee-cccccccccccccceeEeeccCC
Confidence 33457888888988764 666789999999999743 1 1245665 44346799999854 58888999
Q ss_pred ccEEEEeecCceeeeeeccccCCCceec-cCccccCCCCeEEEEEecCCc-EEEEeeccccccCCCCEEEEEECC--CCc
Q 000731 138 GQILVMTHDWDLLYENPLEELAEGFDVH-EPELSSSFSFKSPISWRGDGK-YFATLSEFCNSSKLHKRLKVWERD--SGT 213 (1325)
Q Consensus 138 gtV~l~s~~~d~~~e~~l~~~~~~~~Vs-~tqf~~~~~~i~~isWspDG~-~lAtvss~d~~~~~d~~irVWd~~--~G~ 213 (1325)
++|.+|+..-.... ++.+. -+-|++|.+.|..++|.+--+ .|++|+ .++.+.|||.+ +-+
T Consensus 200 ~~i~lwdi~~~~~~---------~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~-------dd~~L~iwD~R~~~~~ 263 (422)
T KOG0264|consen 200 HTICLWDINAESKE---------DKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVG-------DDGKLMIWDTRSNTSK 263 (422)
T ss_pred CcEEEEeccccccC---------CccccceEEeecCCcceehhhccccchhhheeec-------CCCeEEEEEcCCCCCC
Confidence 99988764321110 11111 234778999999999999654 566443 46899999987 445
Q ss_pred eeeeecCCCCceeEEEEccCC-CeEEEEecCCCCCCCCeEEEEeCCCceEEEEEeccCCCCcEEEEEEccCC-CeeEEEE
Q 000731 214 LQASSELKAFMGAVLEWMPSG-ANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMS-DLLAAVV 291 (1325)
Q Consensus 214 l~~t~e~~~~~v~~lawsPdG-~~IAs~~~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg-~~LAs~~ 291 (1325)
...+-..|++.+++++|+|-+ .+||+++.| .+|.+||+-.+.+.-.++.++ ...|..|.|||.- ++||+++
T Consensus 264 ~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D------~tV~LwDlRnL~~~lh~~e~H-~dev~~V~WSPh~etvLASSg 336 (422)
T KOG0264|consen 264 PSHSVKAHSAEVNCVAFNPFNEFILATGSAD------KTVALWDLRNLNKPLHTFEGH-EDEVFQVEWSPHNETVLASSG 336 (422)
T ss_pred CcccccccCCceeEEEeCCCCCceEEeccCC------CcEEEeechhcccCceeccCC-CcceEEEEeCCCCCceeEecc
Confidence 555667799999999999955 578999986 469999965555543334443 5679999999975 5899999
Q ss_pred ccCCCCeEEEEEeeCCeeEEEeEEEEecCCcEEEEEccCCCcEEEEEecCCcEEEEEEEEeeeeCCCeeEEEEeCCEEEE
Q 000731 292 RFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILV 371 (1325)
Q Consensus 292 ~d~~~~~VqLW~~~n~~wylkqel~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDG~~l~l 371 (1325)
.|+ .+.+||++.-. -+| + |+. +
T Consensus 337 ~D~---rl~vWDls~ig--~eq----------~----~ed----------a----------------------------- 358 (422)
T KOG0264|consen 337 TDR---RLNVWDLSRIG--EEQ----------S----PED----------A----------------------------- 358 (422)
T ss_pred cCC---cEEEEeccccc--ccc----------C----hhh----------h-----------------------------
Confidence 999 89999986410 000 0 000 0
Q ss_pred eecCCcCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCC
Q 000731 372 TPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPA 424 (1325)
Q Consensus 372 t~l~~~~vPpPm~~~~l~~~~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~~~~ 424 (1325)
..-||.+-+-.-+|.+.|++++|+|+.. -.+|+++.|+.+.||+...
T Consensus 359 -----~dgppEllF~HgGH~~kV~DfsWnp~eP-W~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 359 -----EDGPPELLFIHGGHTAKVSDFSWNPNEP-WTIASVAEDNILQIWQMAE 405 (422)
T ss_pred -----ccCCcceeEEecCcccccccccCCCCCC-eEEEEecCCceEEEeeccc
Confidence 0114433333335788899999999863 6899999999999999874
No 130
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=1.2e-12 Score=144.14 Aligned_cols=262 Identities=12% Similarity=0.071 Sum_probs=176.2
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEEC--CCcE
Q 000731 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTS--SGLL 99 (1325)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~V~~v~~spdg~~La~as~--dG~I 99 (1325)
.+..+.|+.+++.+..+|+|..+..+|. ..++. +.++.+- .-.|-.+.|-.....+.-++. |-+|
T Consensus 16 ~i~sl~fs~~G~~litss~dDsl~LYd~--~~g~~---~~ti~sk--------kyG~~~~~Fth~~~~~i~sStk~d~tI 82 (311)
T KOG1446|consen 16 KINSLDFSDDGLLLITSSEDDSLRLYDS--LSGKQ---VKTINSK--------KYGVDLACFTHHSNTVIHSSTKEDDTI 82 (311)
T ss_pred ceeEEEecCCCCEEEEecCCCeEEEEEc--CCCce---eeEeecc--------cccccEEEEecCCceEEEccCCCCCce
Confidence 7899999999999999999888999998 45443 2221111 113445555555555555555 7899
Q ss_pred EEEeCCCCe-EEEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeeeccccCCCceeccCccccCCCCeEE
Q 000731 100 LLHSVDGNA-TEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSP 178 (1325)
Q Consensus 100 ~lw~~~~~~-~e~vg~~~~~I~~~awSPDG~~LA~~s~dgtV~l~s~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~ 178 (1325)
+..++.+.+ +..++.|...|++++-||-++...+++-|++|++|+. -...+..-.. -.+..-
T Consensus 83 ryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDl----R~~~cqg~l~-------------~~~~pi 145 (311)
T KOG1446|consen 83 RYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDL----RVKKCQGLLN-------------LSGRPI 145 (311)
T ss_pred EEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEe----cCCCCceEEe-------------cCCCcc
Confidence 999998866 4566667999999999999999999999999988752 2111111100 113366
Q ss_pred EEEecCCcEEEEeeccccccCCCCEEEEEECCC--Cceeeeec---CCCCceeEEEEccCCCeEEEEecCCCCCCCCeEE
Q 000731 179 ISWRGDGKYFATLSEFCNSSKLHKRLKVWERDS--GTLQASSE---LKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIV 253 (1325)
Q Consensus 179 isWspDG~~lAtvss~d~~~~~d~~irVWd~~~--G~l~~t~e---~~~~~v~~lawsPdG~~IAs~~~d~~~~~~~~V~ 253 (1325)
++|.|.|-+|| ++. +...|++||.+. +..-.++. +...-...|.|||||+.|.-+... ..+.
T Consensus 146 ~AfDp~GLifA-~~~------~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~------s~~~ 212 (311)
T KOG1446|consen 146 AAFDPEGLIFA-LAN------GSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNA------SFIY 212 (311)
T ss_pred eeECCCCcEEE-Eec------CCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCC------CcEE
Confidence 89999999999 653 234999999852 22222222 112234789999999998877653 3466
Q ss_pred EEe-CCCceEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeEEEeEEEEecCCc-EEEEEccCC
Q 000731 254 FYE-RNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDG-IRFMWHPTK 331 (1325)
Q Consensus 254 ~~e-~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~n~~wylkqel~~~~~~~-~~v~Wsp~~ 331 (1325)
+.+ -.|.....|.........-.+-.|+|||+.+.+++.|+ +|.+|+..+.+-.. .+....... .++.|.|.-
T Consensus 213 ~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg---~i~vw~~~tg~~v~--~~~~~~~~~~~~~~fnP~~ 287 (311)
T KOG1446|consen 213 LLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDG---TIHVWNLETGKKVA--VLRGPNGGPVSCVRFNPRY 287 (311)
T ss_pred EEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCC---cEEEEEcCCCcEee--EecCCCCCCccccccCCce
Confidence 666 46777776765421111235788999999999999999 99999998876322 222211112 566677643
No 131
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.58 E-value=1.9e-13 Score=154.55 Aligned_cols=256 Identities=11% Similarity=0.104 Sum_probs=180.4
Q ss_pred cCceeccccccccccccccc--ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEE
Q 000731 2 NNLKLCAEVPLNLELQSKDE--ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSIT 79 (1325)
Q Consensus 2 rNL~~~~~~~~~~~~~~~~~--~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~V~ 79 (1325)
+|+++++...-++-...+|- .|+...+.++.+.+..+|.|..|+.|.....+.. .+ ++.| ...|+
T Consensus 241 ~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~---~~------~~~h----~~~V~ 307 (506)
T KOG0289|consen 241 KTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEP---TS------SRPH----EEPVT 307 (506)
T ss_pred CceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCc---cc------cccc----cccce
Confidence 35555554333322223332 6888889999999999999999999998411111 11 2222 46899
Q ss_pred EEEEccCCCEEEEEECCCcEEEEeCCCCeEEEecee---cCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeeecc
Q 000731 80 AFDYLMEKEALIVGTSSGLLLLHSVDGNATEVVGRV---EGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLE 156 (1325)
Q Consensus 80 ~v~~spdg~~La~as~dG~I~lw~~~~~~~e~vg~~---~~~I~~~awSPDG~~LA~~s~dgtV~l~s~~~d~~~e~~l~ 156 (1325)
.++-+|.|++|.+++.||++...+..++..-++-.+ +-.+++++|.|||-++++++.|+.|++|+- -....
T Consensus 308 ~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdl----ks~~~-- 381 (506)
T KOG0289|consen 308 GLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDL----KSQTN-- 381 (506)
T ss_pred eeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEc----CCccc--
Confidence 999999999999999999999999988765544333 345999999999999999999999998752 11111
Q ss_pred ccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeecCCC-CceeEEEEccCCC
Q 000731 157 ELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKA-FMGAVLEWMPSGA 235 (1325)
Q Consensus 157 ~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~-~~v~~lawsPdG~ 235 (1325)
...|.+|.+.|..|+|+-+|.|+| ++. .|+.|++||.+.-+...+..-.+ ..+.+++|-++|.
T Consensus 382 ---------~a~Fpght~~vk~i~FsENGY~La-t~a------dd~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt 445 (506)
T KOG0289|consen 382 ---------VAKFPGHTGPVKAISFSENGYWLA-TAA------DDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGT 445 (506)
T ss_pred ---------cccCCCCCCceeEEEeccCceEEE-EEe------cCCeEEEEEehhhcccceeeccccccceeEEEcCCCC
Confidence 134667888999999999999999 653 35679999986666555543222 2578999999999
Q ss_pred eEEEEecCCCCCCCCeEEEEeCCCceEEEE-EeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEE
Q 000731 236 NIAAVYDRKSENKCPSIVFYERNGLERSSF-DINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKIC 302 (1325)
Q Consensus 236 ~IAs~~~d~~~~~~~~V~~~e~nGl~~~~f-~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW 302 (1325)
+++.++.+ ..|-.+.+....-.+. .+.. +.+....+.|..+-++||+++-|. .++|+
T Consensus 446 ~L~~~g~~------l~Vy~~~k~~k~W~~~~~~~~-~sg~st~v~Fg~~aq~l~s~smd~---~l~~~ 503 (506)
T KOG0289|consen 446 YLGIAGSD------LQVYICKKKTKSWTEIKELAD-HSGLSTGVRFGEHAQYLASTSMDA---ILRLY 503 (506)
T ss_pred eEEeecce------eEEEEEecccccceeeehhhh-cccccceeeecccceEEeeccchh---heEEe
Confidence 99988653 4455555321111110 1111 234677899999999999999988 56554
No 132
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.58 E-value=2.5e-13 Score=165.31 Aligned_cols=223 Identities=12% Similarity=0.046 Sum_probs=142.6
Q ss_pred CCEEEEEEccCCCEEEEEEC---CCcEEEEeCCCCeEEEeceecCcEEEEEEcCCCCeEEEEe-CCcc--EEEEeecCce
Q 000731 76 DSITAFDYLMEKEALIVGTS---SGLLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTT-GFGQ--ILVMTHDWDL 149 (1325)
Q Consensus 76 ~~V~~v~~spdg~~La~as~---dG~I~lw~~~~~~~e~vg~~~~~I~~~awSPDG~~LA~~s-~dgt--V~l~s~~~d~ 149 (1325)
+.+.+..|||||+.|+..+. +..|.+|++.+++.+.+....+.+.+.+|||||+.||.+. .+|. |.+|+.....
T Consensus 199 ~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~ 278 (429)
T PRK03629 199 QPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ 278 (429)
T ss_pred CceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCC
Confidence 46889999999999997652 3468999999887665554556677899999999999773 3554 5555432111
Q ss_pred eeeeeccccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeecCCCCceeEEE
Q 000731 150 LYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLE 229 (1325)
Q Consensus 150 ~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~~~v~~la 229 (1325)
. ..+. .+...+...+|+|||+.|++++. . .+.-.|.++|..+|+...... ..+.....+
T Consensus 279 ~--~~lt--------------~~~~~~~~~~wSPDG~~I~f~s~-~---~g~~~Iy~~d~~~g~~~~lt~-~~~~~~~~~ 337 (429)
T PRK03629 279 I--RQVT--------------DGRSNNTEPTWFPDSQNLAYTSD-Q---AGRPQVYKVNINGGAPQRITW-EGSQNQDAD 337 (429)
T ss_pred E--EEcc--------------CCCCCcCceEECCCCCEEEEEeC-C---CCCceEEEEECCCCCeEEeec-CCCCccCEE
Confidence 1 1111 11123578999999999984442 1 122356666875665544322 233346789
Q ss_pred EccCCCeEEEEecCCCCCCCCeEEEEeCCCceEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCee
Q 000731 230 WMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHW 309 (1325)
Q Consensus 230 wsPdG~~IAs~~~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~n~~w 309 (1325)
|||||+.||.++.+.+ ...|.+|+..+..... +.. .....+.+|||||+.|+..+.++....+.+|++....
T Consensus 338 ~SpDG~~Ia~~~~~~g---~~~I~~~dl~~g~~~~--Lt~--~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~- 409 (429)
T PRK03629 338 VSSDGKFMVMVSSNGG---QQHIAKQDLATGGVQV--LTD--TFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRF- 409 (429)
T ss_pred ECCCCCEEEEEEccCC---CceEEEEECCCCCeEE--eCC--CCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCC-
Confidence 9999999998876432 4568888865433332 221 1224578899999999999988754467777775432
Q ss_pred EEEeEEEEecCCcEEEEEcc
Q 000731 310 YLKYEIRYLRRDGIRFMWHP 329 (1325)
Q Consensus 310 ylkqel~~~~~~~~~v~Wsp 329 (1325)
.+.+..+........|+|
T Consensus 410 --~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 410 --KARLPATDGQVKFPAWSP 427 (429)
T ss_pred --eEECccCCCCcCCcccCC
Confidence 233433222335677876
No 133
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.58 E-value=1.3e-13 Score=150.95 Aligned_cols=304 Identities=15% Similarity=0.252 Sum_probs=193.9
Q ss_pred ceeEEeeecCCCEEEEE-eCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEE-EEEECCCcE
Q 000731 22 ILQFSALDIEQNRLFFA-SSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEAL-IVGTSSGLL 99 (1325)
Q Consensus 22 ~~~~~~~d~~~~~l~~~-s~~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~V~~v~~spdg~~L-a~as~dG~I 99 (1325)
.++.+-|-.|+.-+.++ ..+..+..|++ .+.+ |. .++++| .+.+.++.|||||+.| .+..-+-.|
T Consensus 50 ki~yieW~ads~~ilC~~yk~~~vqvwsl--~Qpe--w~-ckIdeg--------~agls~~~WSPdgrhiL~tseF~lri 116 (447)
T KOG4497|consen 50 KIVYIEWKADSCHILCVAYKDPKVQVWSL--VQPE--WY-CKIDEG--------QAGLSSISWSPDGRHILLTSEFDLRI 116 (447)
T ss_pred HhhheeeeccceeeeeeeeccceEEEEEe--ecce--eE-EEeccC--------CCcceeeeECCCcceEeeeecceeEE
Confidence 56677888888877776 55878999999 5555 33 223333 4679999999999655 455557778
Q ss_pred EEEeCCCCeEEEeceecCcEEEEEEcCCCCeEEEEeCCcc---EEEE-eecCceeeeeeccccCCCceeccCccccCCCC
Q 000731 100 LLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQ---ILVM-THDWDLLYENPLEELAEGFDVHEPELSSSFSF 175 (1325)
Q Consensus 100 ~lw~~~~~~~e~vg~~~~~I~~~awSPDG~~LA~~s~dgt---V~l~-s~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~ 175 (1325)
.+|++.+.....+.+...++..++|.|||+..|+++.-.. +.+. -++|..+.+..+.+.+
T Consensus 117 TVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~D---------------- 180 (447)
T KOG4497|consen 117 TVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTID---------------- 180 (447)
T ss_pred EEEEeccceeEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCccc----------------
Confidence 8999999888777777788999999999999999986432 2232 2467777666655443
Q ss_pred eEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeecCCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEE-
Q 000731 176 KSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVF- 254 (1325)
Q Consensus 176 i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~~~v~~lawsPdG~~IAs~~~d~~~~~~~~V~~- 254 (1325)
...|-|||||..+| |= |. .-+-+|..|.+..| +..++|||.|++||.|+.|. .+++
T Consensus 181 ltgieWsPdg~~la-Vw--d~--~Leykv~aYe~~lG------------~k~v~wsP~~qflavGsyD~------~lrvl 237 (447)
T KOG4497|consen 181 LTGIEWSPDGNWLA-VW--DN--VLEYKVYAYERGLG------------LKFVEWSPCNQFLAVGSYDQ------MLRVL 237 (447)
T ss_pred ccCceECCCCcEEE-Ee--cc--hhhheeeeeeeccc------------eeEEEeccccceEEeeccch------hhhhh
Confidence 36799999999999 52 21 12345556655232 46789999999999998872 1111
Q ss_pred ----EeCCC-------------------------ceEEE--E------------------------Eec--cC-----C-
Q 000731 255 ----YERNG-------------------------LERSS--F------------------------DIN--EQ-----I- 271 (1325)
Q Consensus 255 ----~e~nG-------------------------l~~~~--f------------------------~l~--~~-----~- 271 (1325)
|-.-| +.|+. | .++ .+ +
T Consensus 238 nh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnP 317 (447)
T KOG4497|consen 238 NHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNP 317 (447)
T ss_pred ceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCc
Confidence 10000 00110 0 000 00 0
Q ss_pred CCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeEEEeEEEEecCCc-EEEEEccCCCcEEEEEecCCcEEEEEEE
Q 000731 272 DSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDG-IRFMWHPTKPLQLICWTLDGQITTYNFI 350 (1325)
Q Consensus 272 ~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~n~~wylkqel~~~~~~~-~~v~Wsp~~~~~L~~~~~~g~~~~~~~~ 350 (1325)
--.+.-|+||+|++++|+....- -+.+.|||+.|.+- +. ...+..+ ..+.|||..|. |.+.++ ....| .
T Consensus 318 k~g~g~lafs~Ds~y~aTrnd~~-PnalW~Wdlq~l~l---~a-vLiQk~piraf~WdP~~pr-L~vctg--~srLY--~ 387 (447)
T KOG4497|consen 318 KCGAGKLAFSCDSTYAATRNDKY-PNALWLWDLQNLKL---HA-VLIQKHPIRAFEWDPGRPR-LVVCTG--KSRLY--F 387 (447)
T ss_pred ccccceeeecCCceEEeeecCCC-CceEEEEechhhhh---hh-hhhhccceeEEEeCCCCce-EEEEcC--CceEE--E
Confidence 12477899999999999976543 23799999987431 00 1112344 77899999886 555553 22222 3
Q ss_pred EeeeeCCCeeEEEEeCCEEEEeecCCcCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCC
Q 000731 351 WTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDG 415 (1325)
Q Consensus 351 ~~~~~~d~~~v~viDG~~l~lt~l~~~~vPpPm~~~~l~~~~~V~~VaFSpdg~~~~LAs~s~Dg 415 (1325)
|..+ +-..| .+|.| .-+|.++-|..+| ..++..+.|.
T Consensus 388 W~ps--g~~~V----------------~vP~~--------GF~i~~l~W~~~g--~~i~l~~kDa 424 (447)
T KOG4497|consen 388 WAPS--GPRVV----------------GVPKK--------GFNIQKLQWLQPG--EFIVLCGKDA 424 (447)
T ss_pred EcCC--CceEE----------------ecCCC--------CceeeeEEecCCC--cEEEEEcCCc
Confidence 4322 10000 11221 1257889999998 7888777774
No 134
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.58 E-value=6.5e-11 Score=138.09 Aligned_cols=367 Identities=16% Similarity=0.170 Sum_probs=229.8
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEE-ccCCC-EEEEEEC-CCc
Q 000731 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDY-LMEKE-ALIVGTS-SGL 98 (1325)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~V~~v~~-spdg~-~La~as~-dG~ 98 (1325)
.+....++..+..+.+.+.++.+..|+.. .... .+.. +.... ...+..+.+ ++++. .++..+. |+.
T Consensus 67 ~i~~~~~~~~~~~~~~~~~d~~~~~~~~~--~~~~--~~~~----~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~d~~ 135 (466)
T COG2319 67 SITSIAFSPDGELLLSGSSDGTIKLWDLD--NGEK--LIKS----LEGLH---DSSVSKLALSSPDGNSILLASSSLDGT 135 (466)
T ss_pred eEEEEEECCCCcEEEEecCCCcEEEEEcC--CCce--eEEE----EeccC---CCceeeEEEECCCcceEEeccCCCCcc
Confidence 67778899999999999888889999983 3320 1111 11110 135677777 88888 5555444 999
Q ss_pred EEEEeCCC--CeEEEeceecCcEEEEEEcCCCCeEEEEeC-CccEEEEeecC-ceeeeeeccccCCCceeccCccccCCC
Q 000731 99 LLLHSVDG--NATEVVGRVEGGVRFISPSPDGDLLGVTTG-FGQILVMTHDW-DLLYENPLEELAEGFDVHEPELSSSFS 174 (1325)
Q Consensus 99 I~lw~~~~--~~~e~vg~~~~~I~~~awSPDG~~LA~~s~-dgtV~l~s~~~-d~~~e~~l~~~~~~~~Vs~tqf~~~~~ 174 (1325)
+.+|+..+ ........|...|.+++|+|++..+++++. |+++.+|+... ..+.. +.+|..
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~ 199 (466)
T COG2319 136 VKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLST----------------LAGHTD 199 (466)
T ss_pred EEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEe----------------eccCCC
Confidence 99999986 344445556889999999999999999986 99999986432 11111 113556
Q ss_pred CeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceee-eecCCCCceeEEEEccCCCeEEEEecCCCCCCCCeEE
Q 000731 175 FKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQA-SSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIV 253 (1325)
Q Consensus 175 ~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~-t~e~~~~~v~~lawsPdG~~IAs~~~d~~~~~~~~V~ 253 (1325)
.+..++|+|+|.+++ ++. ..+++|++||...|.... ....|.... ...|+|+|..+++++.+ ..+.
T Consensus 200 ~v~~~~~~~~~~~~~-~~~-----~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d------~~~~ 266 (466)
T COG2319 200 PVSSLAFSPDGGLLI-ASG-----SSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSD------GTIR 266 (466)
T ss_pred ceEEEEEcCCcceEE-EEe-----cCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCC------CcEE
Confidence 789999999998444 231 246899999986788877 566666654 33899999888877775 5699
Q ss_pred EEeCCCceEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeEEEeEEEEecCCcEEEEEccCCCc
Q 000731 254 FYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPL 333 (1325)
Q Consensus 254 ~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~n~~wylkqel~~~~~~~~~v~Wsp~~~~ 333 (1325)
+|+..........+ ..+...|..+.|+|++..+++++.|+ .+++|+..+...........+......+.| +....
T Consensus 267 ~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~d~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 341 (466)
T COG2319 267 LWDLRSSSSLLRTL-SGHSSSVLSVAFSPDGKLLASGSSDG---TVRLWDLETGKLLSSLTLKGHEGPVSSLSF-SPDGS 341 (466)
T ss_pred EeeecCCCcEEEEE-ecCCccEEEEEECCCCCEEEEeeCCC---cEEEEEcCCCceEEEeeecccCCceEEEEE-CCCCC
Confidence 99865433311222 22356899999999999999988776 699998775432111110111111244555 32111
Q ss_pred EEEEEecCCcEEEEEEEEeeeeCCCeeEEEEeCCEEEEeecCCcCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEEC
Q 000731 334 QLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILS 413 (1325)
Q Consensus 334 ~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDG~~l~lt~l~~~~vPpPm~~~~l~~~~~V~~VaFSpdg~~~~LAs~s~ 413 (1325)
.+..... .| ..+.+|++.... ..........+..+.|++ . .........
T Consensus 342 ~~~~~~~-----------------------~d-~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~ 390 (466)
T COG2319 342 LLVSGGS-----------------------DD-GTIRLWDLRTGK-----PLKTLEGHSNVLSVSFSP-D-GRVVSSGST 390 (466)
T ss_pred EEEEeec-----------------------CC-CcEEeeecCCCc-----eeEEecCCceEEEEEECC-C-CCEEEEecC
Confidence 1222110 11 223333332221 111122223378899988 6 355666889
Q ss_pred CCcEEEEeCCCCCccccccCCceeEeeeccccccCcEEEEEEecCCeEEEEEecCCCCceEEEEe
Q 000731 414 DGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGA 478 (1325)
Q Consensus 414 Dgti~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~~~~~~~~~~~ 478 (1325)
++.+.+|+...........+ ....+....+++++..++.+..+ ..+.+|..
T Consensus 391 ~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 441 (466)
T COG2319 391 DGTVRLWDLSTGSLLRNLDG------------HTSRVTSLDFSPDGKSLASGSSD--NTIRLWDL 441 (466)
T ss_pred CCceEEEecccCeeeeeccC------------CCCcEEEEEECCCCcEEEEecCC--CcEEEEec
Confidence 99999999975432211110 00467888889998887763332 45555554
No 135
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.57 E-value=1.1e-12 Score=143.67 Aligned_cols=283 Identities=14% Similarity=0.134 Sum_probs=182.0
Q ss_pred CCCCCEEEEEEccCCCEEEEEECCCcEEEEeCCCCeEEEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeee
Q 000731 73 EPGDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYE 152 (1325)
Q Consensus 73 ~~~~~V~~v~~spdg~~La~as~dG~I~lw~~~~~~~e~vg~~~~~I~~~awSPDG~~LA~~s~dgtV~l~s~~~d~~~e 152 (1325)
.|.+.|.+|.|+|.+..|.+++-||++++|+..+..+...=.|...|.+.+|-++ ..+++++-||+|++.+.... .+
T Consensus 11 pP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~--~~ 87 (323)
T KOG1036|consen 11 PPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFADE-STIVTGGLDGQVRRYDLNTG--NE 87 (323)
T ss_pred CChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccCC-ceEEEeccCceEEEEEecCC--cc
Confidence 3568999999999999999999999999999988655433346889999999985 78899999999987543221 11
Q ss_pred eeccccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeecCCCCceeEEEEcc
Q 000731 153 NPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMP 232 (1325)
Q Consensus 153 ~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~~~v~~lawsP 232 (1325)
. +...|+..+.+|..++--..++ ++++ |++|++||..+-...-+++.. ..|.+ -+-
T Consensus 88 ~--------------~igth~~~i~ci~~~~~~~~vI-sgsW------D~~ik~wD~R~~~~~~~~d~~-kkVy~--~~v 143 (323)
T KOG1036|consen 88 D--------------QIGTHDEGIRCIEYSYEVGCVI-SGSW------DKTIKFWDPRNKVVVGTFDQG-KKVYC--MDV 143 (323)
T ss_pred e--------------eeccCCCceEEEEeeccCCeEE-Eccc------CccEEEEeccccccccccccC-ceEEE--Eec
Confidence 1 2224667889999986444444 3544 689999998543333333322 23444 345
Q ss_pred CCCeEEEEecCCCCCCCCeEEEEeCCCceEEEEEec-cCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeEE
Q 000731 233 SGANIAAVYDRKSENKCPSIVFYERNGLERSSFDIN-EQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYL 311 (1325)
Q Consensus 233 dG~~IAs~~~d~~~~~~~~V~~~e~nGl~~~~f~l~-~~~~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~n~~wyl 311 (1325)
.|+.|..|..+ ..|.+||.-.+.. -|..+ ..-...+.+|+.-|+++=.|+++-+| .|-+
T Consensus 144 ~g~~LvVg~~~------r~v~iyDLRn~~~-~~q~reS~lkyqtR~v~~~pn~eGy~~sSieG---RVav---------- 203 (323)
T KOG1036|consen 144 SGNRLVVGTSD------RKVLIYDLRNLDE-PFQRRESSLKYQTRCVALVPNGEGYVVSSIEG---RVAV---------- 203 (323)
T ss_pred cCCEEEEeecC------ceEEEEEcccccc-hhhhccccceeEEEEEEEecCCCceEEEeecc---eEEE----------
Confidence 67888776654 4688998422211 11111 11124588999999888888888777 3311
Q ss_pred EeEEEEecCCcEEEEEccCCCcEEEEEecCCcEEEEEEEEeeeeCCCeeEEEEeCCEEEEeecCCcCCCCCceeeeecCC
Q 000731 312 KYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFP 391 (1325)
Q Consensus 312 kqel~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDG~~l~lt~l~~~~vPpPm~~~~l~~~ 391 (1325)
.| +++. +. .....++|.-... .-+|..+ -
T Consensus 204 ----E~---------~d~s-~~----------~~skkyaFkCHr~------~~~~~~~---------------------~ 232 (323)
T KOG1036|consen 204 ----EY---------FDDS-EE----------AQSKKYAFKCHRL------SEKDTEI---------------------I 232 (323)
T ss_pred ----Ec---------cCCc-hH----------HhhhceeEEeeec------ccCCceE---------------------E
Confidence 11 0110 00 0000011110000 0011111 1
Q ss_pred CCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccccccCCceeEeeeccccccCcEEEEEEecCCeEEEEEec
Q 000731 392 TAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHH 467 (1325)
Q Consensus 392 ~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~ 467 (1325)
-+|++++|+|-. +.||++++||.|-+|+..+...+..+.+. ..+|..++|+.||..||++..
T Consensus 233 yPVNai~Fhp~~--~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~------------~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 233 YPVNAIAFHPIH--GTFATGGSDGIVNIWDLFNRKRLKQLAKY------------ETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred EEeceeEecccc--ceEEecCCCceEEEccCcchhhhhhccCC------------CCceEEEEeccCCCeEEEEec
Confidence 268999999997 89999999999999999765444233221 246899999999999999865
No 136
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.57 E-value=1.8e-12 Score=152.95 Aligned_cols=384 Identities=13% Similarity=0.091 Sum_probs=237.8
Q ss_pred eeecCCCEEEEEeCCCcEEEEecccccccccceeeccc------cccc---c---c--cCCC--CCCEEEEEEccCCCEE
Q 000731 27 ALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAIS------AEIE---H---I--DLEP--GDSITAFDYLMEKEAL 90 (1325)
Q Consensus 27 ~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~------~~l~---~---~--~~~~--~~~V~~v~~spdg~~L 90 (1325)
++-.-++.|++++.++.|..+++. +-+- +.||| ++.. . . ...| -..-+++.|.|..+.|
T Consensus 265 CIcVs~r~I~cgCa~g~vrlFnp~--tL~y---~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~kl 339 (1080)
T KOG1408|consen 265 CICVSSRLIACGCAKGMVRLFNPE--TLDY---AGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTDKL 339 (1080)
T ss_pred eeeeecceEEEeeccceeeecCcc--hhhh---ccccccccccccchhhcccccccccccCcccCCceeEEEecCCCceE
Confidence 444567889999999977777762 2221 33444 1110 0 0 0001 1235688999999999
Q ss_pred EEEECCCcEEEEeCCC----CeEEEeceecCcEEEEEEcC------C-----CCeEEEEeCCccEEEEeecC----ceee
Q 000731 91 IVGTSSGLLLLHSVDG----NATEVVGRVEGGVRFISPSP------D-----GDLLGVTTGFGQILVMTHDW----DLLY 151 (1325)
Q Consensus 91 a~as~dG~I~lw~~~~----~~~e~vg~~~~~I~~~awSP------D-----G~~LA~~s~dgtV~l~s~~~----d~~~ 151 (1325)
.....|..+.+||+.. +++...=.|..+||.+.-=| . ..-+.+++.|+||++|+..+ +...
T Consensus 340 scVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyr 419 (1080)
T KOG1408|consen 340 SCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYR 419 (1080)
T ss_pred EEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceee
Confidence 9999999999999975 34433334677788776544 1 12478899999999998766 2211
Q ss_pred eeeccccCCCceec---cCccc----------------cCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCC
Q 000731 152 ENPLEELAEGFDVH---EPELS----------------SSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSG 212 (1325)
Q Consensus 152 e~~l~~~~~~~~Vs---~tqf~----------------~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G 212 (1325)
.-.+..+ ..+-+. ++||- +...++.+|+-||||++|| ++ +.-+.+|||+..+-
T Consensus 420 RNils~~-l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLA-sG------Dr~GnlrVy~Lq~l 491 (1080)
T KOG1408|consen 420 RNILSAN-LSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLA-SG------DRGGNLRVYDLQEL 491 (1080)
T ss_pred cccchhh-hhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceec-cc------CccCceEEEEehhh
Confidence 1111111 011111 22222 1224688999999999999 55 23479999999777
Q ss_pred ceeeeecCCCCceeEEEEccC---CCeEEEEecCCCCCCCCeEEEEeC--CCceEEEEEeccCCCCcEEEEEEccCC--C
Q 000731 213 TLQASSELKAFMGAVLEWMPS---GANIAAVYDRKSENKCPSIVFYER--NGLERSSFDINEQIDSTVELLKWNCMS--D 285 (1325)
Q Consensus 213 ~l~~t~e~~~~~v~~lawsPd---G~~IAs~~~d~~~~~~~~V~~~e~--nGl~~~~f~l~~~~~~~V~~laWSpDg--~ 285 (1325)
+.....|.|+.-|-+|.||-- .++|||+++| .-|.+||. |=...+ ++.+ +...|.+|.|-..| .
T Consensus 492 ~~~~~~eAHesEilcLeyS~p~~~~kLLASasrd------RlIHV~Dv~rny~l~q--tld~-HSssITsvKFa~~gln~ 562 (1080)
T KOG1408|consen 492 EYTCFMEAHESEILCLEYSFPVLTNKLLASASRD------RLIHVYDVKRNYDLVQ--TLDG-HSSSITSVKFACNGLNR 562 (1080)
T ss_pred hhhhheecccceeEEEeecCchhhhHhhhhccCC------ceEEEEecccccchhh--hhcc-cccceeEEEEeecCCce
Confidence 777778999999999999753 4689999996 56999984 321111 2222 35689999999988 5
Q ss_pred eeEEEEccCCCCeEEEEEeeCCeeEEEeEEEEecCCcEEEEEccCCCcEEEEEecCCcEEEEEEEEeeeeCCCeeEEEEe
Q 000731 286 LLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVID 365 (1325)
Q Consensus 286 ~LAs~~~d~~~~~VqLW~~~n~~wylkqel~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viD 365 (1325)
...+.+.|. .| .+++.. |. .++.. .|.+.+++ +.-..|+. .++|...-++.+..
T Consensus 563 ~MiscGADk---si-mFr~~q-----k~------~~g~~---f~r~t~t~------~ktTlYDm--~Vdp~~k~v~t~cQ 616 (1080)
T KOG1408|consen 563 KMISCGADK---SI-MFRVNQ-----KA------SSGRL---FPRHTQTL------SKTTLYDM--AVDPTSKLVVTVCQ 616 (1080)
T ss_pred EEEeccCch---hh-heehhc-----cc------cCcee---cccccccc------ccceEEEe--eeCCCcceEEEEec
Confidence 666777776 22 333221 00 00100 01111111 11111211 12233333444555
Q ss_pred CCEEEEeecCCcCCCCCceeeee----cCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccccccCCceeEeee
Q 000731 366 GSKILVTPLSLSLMPPPMYLFSL----KFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEAC 441 (1325)
Q Consensus 366 G~~l~lt~l~~~~vPpPm~~~~l----~~~~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~~~~~~~~~~~~g~~~~~~~~ 441 (1325)
+.+|.+.++.-+- -.+++ .+.+....|...|.| .+||+..+|.++.++|+...+|.....||
T Consensus 617 Drnirif~i~sgK-----q~k~FKgs~~~eG~lIKv~lDPSg--iY~atScsdktl~~~Df~sgEcvA~m~GH------- 682 (1080)
T KOG1408|consen 617 DRNIRIFDIESGK-----QVKSFKGSRDHEGDLIKVILDPSG--IYLATSCSDKTLCFVDFVSGECVAQMTGH------- 682 (1080)
T ss_pred ccceEEEeccccc-----eeeeecccccCCCceEEEEECCCc--cEEEEeecCCceEEEEeccchhhhhhcCc-------
Confidence 5555555543211 01122 256677889999999 89999999999999999988888666665
Q ss_pred ccccccCcEEEEEEecCCeEEEEEecCCCCceEEEEee
Q 000731 442 ISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGAT 479 (1325)
Q Consensus 442 ~~~~~~~~v~~l~~~~d~~lla~~~~~~~~~~~~~~~~ 479 (1325)
...|..+-|++|-+.|.+.+.+ .-+.+|.+.
T Consensus 683 -----sE~VTG~kF~nDCkHlISvsgD--gCIFvW~lp 713 (1080)
T KOG1408|consen 683 -----SEAVTGVKFLNDCKHLISVSGD--GCIFVWKLP 713 (1080)
T ss_pred -----chheeeeeecccchhheeecCC--ceEEEEECc
Confidence 3478899999999888777654 456777764
No 137
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.57 E-value=5e-13 Score=145.91 Aligned_cols=264 Identities=17% Similarity=0.250 Sum_probs=174.5
Q ss_pred ecCcEEEEEEcCCCCeEEEEeCCccEEEEee-c----CceeeeeeccccCCCceeccCccccCCCCeEEEEEecC--CcE
Q 000731 115 VEGGVRFISPSPDGDLLGVTTGFGQILVMTH-D----WDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGD--GKY 187 (1325)
Q Consensus 115 ~~~~I~~~awSPDG~~LA~~s~dgtV~l~s~-~----~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspD--G~~ 187 (1325)
|.+=|.++.|.+-|+.+|+++.|++|++|+. + |... ..++.|++.|+.|.|-+- |+.
T Consensus 12 h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~T----------------s~Wrah~~Si~rV~WAhPEfGqv 75 (361)
T KOG2445|consen 12 HKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCT----------------SSWRAHDGSIWRVVWAHPEFGQV 75 (361)
T ss_pred CcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEe----------------eeEEecCCcEEEEEecCccccce
Confidence 4677999999999999999999999999962 1 2221 124567889999999764 899
Q ss_pred EEEeeccccccCCCCEEEEEECCCC---------ceeeeecCCCCceeEEEEccC--CCeEEEEecCCCCCCCCeEEEEe
Q 000731 188 FATLSEFCNSSKLHKRLKVWERDSG---------TLQASSELKAFMGAVLEWMPS--GANIAAVYDRKSENKCPSIVFYE 256 (1325)
Q Consensus 188 lAtvss~d~~~~~d~~irVWd~~~G---------~l~~t~e~~~~~v~~lawsPd--G~~IAs~~~d~~~~~~~~V~~~e 256 (1325)
+|+++ . ||+++||.-..- ....++....+.|.+|.|.|. |-.+|+++.| +.|++||
T Consensus 76 vA~cS-~------Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aD------G~lRIYE 142 (361)
T KOG2445|consen 76 VATCS-Y------DRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASAD------GILRIYE 142 (361)
T ss_pred EEEEe-c------CCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccC------cEEEEEe
Confidence 99554 3 599999976211 123334445567899999996 7789999986 6799998
Q ss_pred C-CCceEEEEEec----------cCCCCcEEEEEEccC---CCeeEEEEccCC--CCeEEEEEeeCC--eeEEEeEEEEe
Q 000731 257 R-NGLERSSFDIN----------EQIDSTVELLKWNCM---SDLLAAVVRFEE--YDSVKICFFSNN--HWYLKYEIRYL 318 (1325)
Q Consensus 257 ~-nGl~~~~f~l~----------~~~~~~V~~laWSpD---g~~LAs~~~d~~--~~~VqLW~~~n~--~wylkqel~~~ 318 (1325)
. +-....+++|. +.......+|.|||. ...||+++.+.. -+.++||..+.. +|....++..+
T Consensus 143 A~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~ 222 (361)
T KOG2445|consen 143 APDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDH 222 (361)
T ss_pred cCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCC
Confidence 3 22222223322 112345789999974 458999987732 226999997633 56555666643
Q ss_pred cCCc-EEEEEccCCCc---EEEEEecCCcEEEEEEEEeeeeCCCeeE--EEEeCCEEEEeecCCcCCCCCceeeee-cCC
Q 000731 319 RRDG-IRFMWHPTKPL---QLICWTLDGQITTYNFIWTTAVMENSTA--LVIDGSKILVTPLSLSLMPPPMYLFSL-KFP 391 (1325)
Q Consensus 319 ~~~~-~~v~Wsp~~~~---~L~~~~~~g~~~~~~~~~~~~~~d~~~v--~viDG~~l~lt~l~~~~vPpPm~~~~l-~~~ 391 (1325)
.++ ..++|.|.-+. .|++.+.+| +.+ |.+.+.-..+. -+.++. .++.|.... ...+ .|.
T Consensus 223 -~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I----~~v~~~~s~i~~ee~~~~~--~~~~l~v~~------vs~~~~H~ 288 (361)
T KOG2445|consen 223 -TDPIRDISWAPNIGRSYHLLAVATKDG-VRI----FKVKVARSAIEEEEVLAPD--LMTDLPVEK------VSELDDHN 288 (361)
T ss_pred -CCcceeeeeccccCCceeeEEEeecCc-EEE----EEEeeccchhhhhcccCCC--CccccceEE------eeeccCCC
Confidence 344 89999998763 577888888 543 33221000000 000010 111111110 1122 388
Q ss_pred CCEEEEEEecCCCCCEEEEEECCCcEEEEeCC
Q 000731 392 TAVTEMAFYSKSSKNCLAAILSDGCLCVVDLP 423 (1325)
Q Consensus 392 ~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~~~ 423 (1325)
+.|+.|.|.-.| .+|++.+.||+|++|+..
T Consensus 289 ~~VWrv~wNmtG--tiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 289 GEVWRVRWNMTG--TILSSTGDDGCVRLWKAN 318 (361)
T ss_pred CceEEEEEeeee--eEEeecCCCceeeehhhh
Confidence 899999999999 899999999999999875
No 138
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.57 E-value=3.6e-13 Score=164.51 Aligned_cols=203 Identities=16% Similarity=0.109 Sum_probs=135.7
Q ss_pred CCEEEEEEccCCCEEEEEEC---CCcEEEEeCCCCeEEEeceecCcEEEEEEcCCCCeEEEE-eCCcc--EEEEeecCce
Q 000731 76 DSITAFDYLMEKEALIVGTS---SGLLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVT-TGFGQ--ILVMTHDWDL 149 (1325)
Q Consensus 76 ~~V~~v~~spdg~~La~as~---dG~I~lw~~~~~~~e~vg~~~~~I~~~awSPDG~~LA~~-s~dgt--V~l~s~~~d~ 149 (1325)
..+.+..|||||+.|+.++. ++.|.+||+.+++...+..+.+.+.+.+|||||+.||.. +.++. |.+|+.....
T Consensus 202 ~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~ 281 (435)
T PRK05137 202 SLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGT 281 (435)
T ss_pred CCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCc
Confidence 47899999999999998764 467999999988776666567778899999999988755 45555 4443322111
Q ss_pred eeeeeccccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeecCCCCceeEEE
Q 000731 150 LYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLE 229 (1325)
Q Consensus 150 ~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~~~v~~la 229 (1325)
. ..+. .+.......+|+|||+++++++.. .+...|.+||..+|+...... ..+.....+
T Consensus 282 ~--~~Lt--------------~~~~~~~~~~~spDG~~i~f~s~~----~g~~~Iy~~d~~g~~~~~lt~-~~~~~~~~~ 340 (435)
T PRK05137 282 T--TRLT--------------DSPAIDTSPSYSPDGSQIVFESDR----SGSPQLYVMNADGSNPRRISF-GGGRYSTPV 340 (435)
T ss_pred e--EEcc--------------CCCCccCceeEcCCCCEEEEEECC----CCCCeEEEEECCCCCeEEeec-CCCcccCeE
Confidence 1 1111 111233568999999999844422 234678999986665555443 244456789
Q ss_pred EccCCCeEEEEecCCCCCCCCeEEEEeCCCceEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCC---CeEEEEEeeC
Q 000731 230 WMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEY---DSVKICFFSN 306 (1325)
Q Consensus 230 wsPdG~~IAs~~~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~---~~VqLW~~~n 306 (1325)
|||||+.||..+.+.+ ...|.+|+.+|..... +.. ...+.+++|||||+.|+..+.+.+. ..+.+.++.+
T Consensus 341 ~SpdG~~ia~~~~~~~---~~~i~~~d~~~~~~~~--lt~--~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g 413 (435)
T PRK05137 341 WSPRGDLIAFTKQGGG---QFSIGVMKPDGSGERI--LTS--GFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTG 413 (435)
T ss_pred ECCCCCEEEEEEcCCC---ceEEEEEECCCCceEe--ccC--CCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCC
Confidence 9999999998876432 3578888876543332 221 2246789999999999987765422 2355555544
No 139
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.57 E-value=3.7e-13 Score=159.67 Aligned_cols=254 Identities=14% Similarity=0.075 Sum_probs=189.2
Q ss_pred CEEEEEeCCCcEEEEecccccccccceeeccccccccccCC-CCCCEEE-EEEcc-CCCEEEEEECCCcEEEEeCCCCe-
Q 000731 33 NRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLE-PGDSITA-FDYLM-EKEALIVGTSSGLLLLHSVDGNA- 108 (1325)
Q Consensus 33 ~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~V~~-v~~sp-dg~~La~as~dG~I~lw~~~~~~- 108 (1325)
..+.++|.|+.+..|+. ..++ + +..+.+. |.+.|.. +.|.+ |+-.|++|+.|++|.+|.+.+..
T Consensus 26 ~~i~s~sRd~t~~vw~~--~~~~--~--------l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P 93 (745)
T KOG0301|consen 26 VCIISGSRDGTVKVWAK--KGKQ--Y--------LETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEP 93 (745)
T ss_pred eEEeecCCCCceeeeec--cCcc--c--------ccceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCc
Confidence 35677787888889987 2222 1 2223333 3455655 88885 66679999999999999998754
Q ss_pred EEEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeeeccccCCCceeccCccccCCCCeEEEEEecCCcEE
Q 000731 109 TEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYF 188 (1325)
Q Consensus 109 ~e~vg~~~~~I~~~awSPDG~~LA~~s~dgtV~l~s~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~l 188 (1325)
+.++-.|...|.|++.--|+. |+++|.|.|+++|. ..+..... ++|...|+.+..-|++.|+
T Consensus 94 ~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~-~~~l~~~l----------------~gH~asVWAv~~l~e~~~v 155 (745)
T KOG0301|consen 94 LYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWR-IGELVYSL----------------QGHTASVWAVASLPENTYV 155 (745)
T ss_pred hhhhhccccceeeeecCCcCc-eEecccccceEEec-chhhhccc----------------CCcchheeeeeecCCCcEE
Confidence 345555799999999988887 99999999999994 33443332 2566788999999999654
Q ss_pred EEeeccccccCCCCEEEEEECCCCceeeeecCCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeCCCceEEEEEec
Q 000731 189 ATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDIN 268 (1325)
Q Consensus 189 Atvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~~~v~~lawsPdG~~IAs~~~d~~~~~~~~V~~~e~nGl~~~~f~l~ 268 (1325)
+++ .|++||+|.- |++++++.+|..-|..|+.-|++.+ +|++.| +.|++|+..|....+ ..
T Consensus 156 --Tgs------aDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~f-lScsND------g~Ir~w~~~ge~l~~--~~ 216 (745)
T KOG0301|consen 156 --TGS------ADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSHF-LSCSND------GSIRLWDLDGEVLLE--MH 216 (745)
T ss_pred --ecc------CcceeeeccC--CchhhhhccchhheeeeEEecCCCe-EeecCC------ceEEEEeccCceeee--ee
Confidence 343 4699999975 8999999999999999999999775 566654 679999987754332 11
Q ss_pred cCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeEEEeEEEEecCCcEEEEEccCCCcEEEEEecCCcEE
Q 000731 269 EQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQIT 345 (1325)
Q Consensus 269 ~~~~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~n~~wylkqel~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~ 345 (1325)
+ +++.|++++-.++++.++++++|+ +++||... -+.|.|..+..+.+++..=+.+. +++++.||.+.
T Consensus 217 g-htn~vYsis~~~~~~~Ivs~gEDr---tlriW~~~----e~~q~I~lPttsiWsa~~L~NgD--Ivvg~SDG~Vr 283 (745)
T KOG0301|consen 217 G-HTNFVYSISMALSDGLIVSTGEDR---TLRIWKKD----ECVQVITLPTTSIWSAKVLLNGD--IVVGGSDGRVR 283 (745)
T ss_pred c-cceEEEEEEecCCCCeEEEecCCc---eEEEeecC----ceEEEEecCccceEEEEEeeCCC--EEEeccCceEE
Confidence 2 367899999889999999999999 99999987 36788887655555544444444 57777777664
No 140
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.56 E-value=1e-12 Score=150.07 Aligned_cols=278 Identities=13% Similarity=0.062 Sum_probs=198.8
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccc--cc--cccCC-----CCCCEEEEEEccCCCEEEE
Q 000731 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAE--IE--HIDLE-----PGDSITAFDYLMEKEALIV 92 (1325)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~--l~--~~~~~-----~~~~V~~v~~spdg~~La~ 92 (1325)
.+++++..++...+|++|.++.|.+|+. .++...-.+ ++.+ +. ..++. +...|.+++.||||++||+
T Consensus 144 s~~~vals~d~~~~fsask~g~i~kw~v--~tgk~~~~i--~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylat 219 (479)
T KOG0299|consen 144 SVTSVALSPDDKRVFSASKDGTILKWDV--LTGKKDRYI--IERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLAT 219 (479)
T ss_pred cceEEEeeccccceeecCCCcceeeeeh--hcCcccccc--cccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEe
Confidence 6889999999999999999999999999 666532111 1111 11 11111 2367999999999999999
Q ss_pred EECCCcEEEEeCCCCe-EEEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeeeccccCCCceeccCcccc
Q 000731 93 GTSSGLLLLHSVDGNA-TEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSS 171 (1325)
Q Consensus 93 as~dG~I~lw~~~~~~-~e~vg~~~~~I~~~awSPDG~~LA~~s~dgtV~l~s~~~d~~~e~~l~~~~~~~~Vs~tqf~~ 171 (1325)
|..|..|.||+.++.. +.....|.+.|.+++|=-.-..|-+++.|.+|++|+.+--... ..+.+
T Consensus 220 gg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~v---------------etlyG 284 (479)
T KOG0299|consen 220 GGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYV---------------ETLYG 284 (479)
T ss_pred cCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHH---------------HHHhC
Confidence 9999999999999864 4455567899999999877788999999999999975311111 12336
Q ss_pred CCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeecCCCCceeEEEEccCCCeEEEEecCCCCCCCCe
Q 000731 172 SFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPS 251 (1325)
Q Consensus 172 ~~~~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~~~v~~lawsPdG~~IAs~~~d~~~~~~~~ 251 (1325)
|.+.|..|.-..-++. +|++ +.||++|+|.. .-+.+-++.++.+.+.+++|=-+- .+++|+++ +.
T Consensus 285 Hqd~v~~IdaL~reR~-vtVG------grDrT~rlwKi-~eesqlifrg~~~sidcv~~In~~-HfvsGSdn------G~ 349 (479)
T KOG0299|consen 285 HQDGVLGIDALSRERC-VTVG------GRDRTVRLWKI-PEESQLIFRGGEGSIDCVAFINDE-HFVSGSDN------GS 349 (479)
T ss_pred Cccceeeechhcccce-EEec------cccceeEEEec-cccceeeeeCCCCCeeeEEEeccc-ceeeccCC------ce
Confidence 7788888887766665 4476 35799999998 666666777888888999987664 46778875 57
Q ss_pred EEEEeCCCceEEEEEeccC-----------CCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCe--eEEEeEEEEe
Q 000731 252 IVFYERNGLERSSFDINEQ-----------IDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNH--WYLKYEIRYL 318 (1325)
Q Consensus 252 V~~~e~nGl~~~~f~l~~~-----------~~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~n~~--wylkqel~~~ 318 (1325)
|.+|..--.+ --|+.+.. +..+|.+|+-.|.++++|+++.++ .|+||-++.+- -.+-+++.+.
T Consensus 350 IaLWs~~KKk-plf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G---~vrLW~i~~g~r~i~~l~~ls~~ 425 (479)
T KOG0299|consen 350 IALWSLLKKK-PLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSG---CVRLWKIEDGLRAINLLYSLSLV 425 (479)
T ss_pred EEEeeecccC-ceeEeeccccccCCccccccccceeeeEecccCceEEecCCCC---ceEEEEecCCccccceeeecccc
Confidence 9999843111 12322211 113899999999999999999999 99999998651 1223344321
Q ss_pred cCCcEEEEEccCCCcEEEEEe
Q 000731 319 RRDGIRFMWHPTKPLQLICWT 339 (1325)
Q Consensus 319 ~~~~~~v~Wsp~~~~~L~~~~ 339 (1325)
.-...+.|++++.. +.++.
T Consensus 426 -GfVNsl~f~~sgk~-ivagi 444 (479)
T KOG0299|consen 426 -GFVNSLAFSNSGKR-IVAGI 444 (479)
T ss_pred -cEEEEEEEccCCCE-EEEec
Confidence 12377899998874 44443
No 141
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.56 E-value=4.1e-13 Score=146.98 Aligned_cols=241 Identities=17% Similarity=0.174 Sum_probs=167.8
Q ss_pred eceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeeeccccCCCceeccCccccCCCCeEEEEEecCCc--EEE
Q 000731 112 VGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGK--YFA 189 (1325)
Q Consensus 112 vg~~~~~I~~~awSPDG~~LA~~s~dgtV~l~s~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~--~lA 189 (1325)
..+|.+.|+|+|-| |.++|+||.|.+|.+++ ......+.... .|.+.++.+.|.|+-. .|.
T Consensus 39 ~~aH~~sitavAVs--~~~~aSGssDetI~IYD----m~k~~qlg~ll-----------~HagsitaL~F~~~~S~shLl 101 (362)
T KOG0294|consen 39 FSAHAGSITALAVS--GPYVASGSSDETIHIYD----MRKRKQLGILL-----------SHAGSITALKFYPPLSKSHLL 101 (362)
T ss_pred ccccccceeEEEec--ceeEeccCCCCcEEEEe----ccchhhhccee-----------ccccceEEEEecCCcchhhee
Confidence 45678999999996 89999999999998754 33333332221 4567889999999985 555
Q ss_pred EeeccccccCCCCEEEEEECCCCceeeeecCCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeC-CCceEEEEEec
Q 000731 190 TLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYER-NGLERSSFDIN 268 (1325)
Q Consensus 190 tvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~~~v~~lawsPdG~~IAs~~~d~~~~~~~~V~~~e~-nGl~~~~f~l~ 268 (1325)
+++ .|+.|-||+...-++..++.+|.+.|+.|+.+|+|++-.+.++| +.++.|+. +| ++-|.++
T Consensus 102 -S~s------dDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D------~~lr~WNLV~G--r~a~v~~ 166 (362)
T KOG0294|consen 102 -SGS------DDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGD------QVLRTWNLVRG--RVAFVLN 166 (362)
T ss_pred -eec------CCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCC------ceeeeehhhcC--ccceeec
Confidence 342 36899999998889999999999999999999999998888885 57999994 44 2346666
Q ss_pred cCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeEEEeEEEEecCCcEEEEEccCCCcEEEEEecCCcEEEEE
Q 000731 269 EQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYN 348 (1325)
Q Consensus 269 ~~~~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~n~~wylkqel~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~ 348 (1325)
.... -..|.|+|.|+..++.+.++ |-+|.+.+-+-+ .++..+ ....++.|...+ .|.++.
T Consensus 167 L~~~--at~v~w~~~Gd~F~v~~~~~----i~i~q~d~A~v~--~~i~~~-~r~l~~~~l~~~--~L~vG~--------- 226 (362)
T KOG0294|consen 167 LKNK--ATLVSWSPQGDHFVVSGRNK----IDIYQLDNASVF--REIENP-KRILCATFLDGS--ELLVGG--------- 226 (362)
T ss_pred cCCc--ceeeEEcCCCCEEEEEeccE----EEEEecccHhHh--hhhhcc-ccceeeeecCCc--eEEEec---------
Confidence 4332 33599999999999999997 999999875421 122221 111333343222 122222
Q ss_pred EEEeeeeCCCeeEEEEeCCEEEEeecCCcCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCC
Q 000731 349 FIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPA 424 (1325)
Q Consensus 349 ~~~~~~~~d~~~v~viDG~~l~lt~l~~~~vPpPm~~~~l~~~~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~~~~ 424 (1325)
|...+.+++-.. .. |.+. -+.|+..|-+++|.-+....+|+++++||.|++|+.+.
T Consensus 227 ----------------d~~~i~~~D~ds-~~--~~~~-~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~ 282 (362)
T KOG0294|consen 227 ----------------DNEWISLKDTDS-DT--PLTE-FLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDM 282 (362)
T ss_pred ----------------CCceEEEeccCC-Cc--ccee-eecchhheeeeEEEecCCceEEEEeccCceEEEEEccc
Confidence 223333333222 12 2221 24799999999976664448999999999999999974
No 142
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.55 E-value=1.5e-13 Score=156.82 Aligned_cols=241 Identities=14% Similarity=0.140 Sum_probs=180.7
Q ss_pred ccceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCC-CCCCEEEEEEccCCCEEEEEECCCc
Q 000731 20 DEILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLE-PGDSITAFDYLMEKEALIVGTSSGL 98 (1325)
Q Consensus 20 ~~~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~V~~v~~spdg~~La~as~dG~ 98 (1325)
||.+.+.++...+..||.+..-+ |..||++ ......-+++|| .+ ++.+|.++..+|||+.|++|+.--+
T Consensus 419 GEvVcAvtIS~~trhVyTgGkgc-VKVWdis--~pg~k~PvsqLd-------cl~rdnyiRSckL~pdgrtLivGGeast 488 (705)
T KOG0639|consen 419 GEVVCAVTISNPTRHVYTGGKGC-VKVWDIS--QPGNKSPVSQLD-------CLNRDNYIRSCKLLPDGRTLIVGGEAST 488 (705)
T ss_pred CcEEEEEEecCCcceeEecCCCe-EEEeecc--CCCCCCcccccc-------ccCcccceeeeEecCCCceEEeccccce
Confidence 55788889999999999998777 9999994 222112244333 22 3678999999999999999999999
Q ss_pred EEEEeCCCCe--EE-EeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeeeccccCCCceeccCccccCCCC
Q 000731 99 LLLHSVDGNA--TE-VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSF 175 (1325)
Q Consensus 99 I~lw~~~~~~--~e-~vg~~~~~I~~~awSPDG~~LA~~s~dgtV~l~s~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~ 175 (1325)
+.|||+..-. +. .+..-.-.-.+++.|||.++..++..||+|.||+. ..+... .||++|.++
T Consensus 489 lsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDL----hnq~~V-----------rqfqGhtDG 553 (705)
T KOG0639|consen 489 LSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDL----HNQTLV-----------RQFQGHTDG 553 (705)
T ss_pred eeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEc----ccceee-----------ecccCCCCC
Confidence 9999997533 32 22221234567899999999999999999988753 222222 368899999
Q ss_pred eEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeecCCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEEE
Q 000731 176 KSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFY 255 (1325)
Q Consensus 176 i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~~~v~~lawsPdG~~IAs~~~d~~~~~~~~V~~~ 255 (1325)
+.+|..++||..|= +++ -|.+||-||.++|..+..-. ....|.+|..+|.|.++|.|-.. ..|.+.
T Consensus 554 ascIdis~dGtklW-TGG------lDntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMen------s~vevl 619 (705)
T KOG0639|consen 554 ASCIDISKDGTKLW-TGG------LDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMEN------SNVEVL 619 (705)
T ss_pred ceeEEecCCCceee-cCC------Cccceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeeccc------CcEEEE
Confidence 99999999999888 564 46899999988887554321 23457899999999999999764 346666
Q ss_pred eCCCceEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEee
Q 000731 256 ERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFS 305 (1325)
Q Consensus 256 e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~ 305 (1325)
..+|....+ +.. ++.-|.+|.|++-|+..++.+.|. -+-.|.+-
T Consensus 620 h~skp~kyq--lhl-heScVLSlKFa~cGkwfvStGkDn---lLnawrtP 663 (705)
T KOG0639|consen 620 HTSKPEKYQ--LHL-HESCVLSLKFAYCGKWFVSTGKDN---LLNAWRTP 663 (705)
T ss_pred ecCCcccee--ecc-cccEEEEEEecccCceeeecCchh---hhhhccCc
Confidence 666544433 332 367899999999999999999887 67777764
No 143
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.55 E-value=4.4e-13 Score=146.87 Aligned_cols=285 Identities=17% Similarity=0.141 Sum_probs=178.3
Q ss_pred EEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeeeccccCCCceeccCccc-cCCCCeEEEEEe-------cCCcEEEE
Q 000731 119 VRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELS-SSFSFKSPISWR-------GDGKYFAT 190 (1325)
Q Consensus 119 I~~~awSPDG~~LA~~s~dgtV~l~s~~~d~~~e~~l~~~~~~~~Vs~tqf~-~~~~~i~~isWs-------pDG~~lAt 190 (1325)
.....|||||..|.+-+.|+.+.+|+.-++...+..-....-.++. ..+ .....|...+|- |+..++|
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~---~~r~~eg~tvydy~wYs~M~s~qP~t~l~a- 127 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHL---SYRYQEGETVYDYCWYSRMKSDQPSTNLFA- 127 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccce---eEEeccCCEEEEEEeeeccccCCCccceee-
Confidence 4456899999999999999999998765554433210000000000 000 122457888997 8888999
Q ss_pred eeccccccCCCCEEEEEECCCCceeeeecCCCCc-----eeEEEEccCCCeEEEEecCCCCCCCCeEEEEeC--CCceEE
Q 000731 191 LSEFCNSSKLHKRLKVWERDSGTLQASSELKAFM-----GAVLEWMPSGANIAAVYDRKSENKCPSIVFYER--NGLERS 263 (1325)
Q Consensus 191 vss~d~~~~~d~~irVWd~~~G~l~~t~e~~~~~-----v~~lawsPdG~~IAs~~~d~~~~~~~~V~~~e~--nGl~~~ 263 (1325)
+++ .+.-|++||.-+|++.......+.. -.+|+|+|||..|-+|- +..|++|+. -|..-.
T Consensus 128 ~ss------r~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-------krcirvFdt~RpGr~c~ 194 (406)
T KOG2919|consen 128 VSS------RDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-------KRCIRVFDTSRPGRDCP 194 (406)
T ss_pred ecc------ccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-------cceEEEeeccCCCCCCc
Confidence 664 3578999999999998876654432 37999999999998764 368999984 342211
Q ss_pred EEEeccC----CCCcEEEEEEcc-CCCeeEEEEccCCCCeEEEEEeeCCeeEEEeEEEEecCCcEEEEEccCCCcEEEEE
Q 000731 264 SFDINEQ----IDSTVELLKWNC-MSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICW 338 (1325)
Q Consensus 264 ~f~l~~~----~~~~V~~laWSp-Dg~~LAs~~~d~~~~~VqLW~~~n~~wylkqel~~~~~~~~~v~Wsp~~~~~L~~~ 338 (1325)
.+....+ ..+-+..++||| |++.||+++... .+-|+...+... -+.+-.+...++.+.|++++.. |..+
T Consensus 195 vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q---~~giy~~~~~~p--l~llggh~gGvThL~~~edGn~-lfsG 268 (406)
T KOG2919|consen 195 VYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQ---RVGIYNDDGRRP--LQLLGGHGGGVTHLQWCEDGNK-LFSG 268 (406)
T ss_pred chhhhhcccccccceeeeeeccCCCCcceeeecccc---eeeeEecCCCCc--eeeecccCCCeeeEEeccCcCe-eccc
Confidence 1111111 124578899999 667999999877 677776655432 2333333333488999998874 4443
Q ss_pred ecCCcEEEEEEEEeeeeCCCeeEEEEeCCEEEEeecCCcCCCCCceeeeec-CCC-CEEEEEE--ecCCCCCEEEEEECC
Q 000731 339 TLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLK-FPT-AVTEMAF--YSKSSKNCLAAILSD 414 (1325)
Q Consensus 339 ~~~g~~~~~~~~~~~~~~d~~~v~viDG~~l~lt~l~~~~vPpPm~~~~l~-~~~-~V~~VaF--Spdg~~~~LAs~s~D 414 (1325)
.. -...|+.|++|...- |. +.|+ |-+ .-..|-| .|+| +.||+++.|
T Consensus 269 aR------------------------k~dkIl~WDiR~~~~--pv--~~L~rhv~~TNQRI~FDld~~~--~~LasG~td 318 (406)
T KOG2919|consen 269 AR------------------------KDDKILCWDIRYSRD--PV--YALERHVGDTNQRILFDLDPKG--EILASGDTD 318 (406)
T ss_pred cc------------------------CCCeEEEEeehhccc--hh--hhhhhhccCccceEEEecCCCC--ceeeccCCC
Confidence 21 123456666654322 11 2232 222 2223334 3666 999999999
Q ss_pred CcEEEEeCCCCCccccccCCceeEeeeccccccCcEEEEEEecCCeEEEEEec
Q 000731 415 GCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHH 467 (1325)
Q Consensus 415 gti~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~ 467 (1325)
|.|++|++.+...+ ..+. ....+.+..+++.|-=.++|+++.
T Consensus 319 G~V~vwdlk~~gn~-------~sv~----~~~sd~vNgvslnP~mpilatssG 360 (406)
T KOG2919|consen 319 GSVRVWDLKDLGNE-------VSVT----GNYSDTVNGVSLNPIMPILATSSG 360 (406)
T ss_pred ccEEEEecCCCCCc-------cccc----ccccccccceecCcccceeeeccC
Confidence 99999999763221 1110 123467888888888777887765
No 144
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.54 E-value=1.1e-12 Score=159.76 Aligned_cols=225 Identities=13% Similarity=0.084 Sum_probs=136.7
Q ss_pred CCEEEEEEccCCCEEEEEECC---CcEEEEeCCCCeEEEeceecCcEEEEEEcCCCCeEEEE-eCCccEEEEeecCceee
Q 000731 76 DSITAFDYLMEKEALIVGTSS---GLLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVT-TGFGQILVMTHDWDLLY 151 (1325)
Q Consensus 76 ~~V~~v~~spdg~~La~as~d---G~I~lw~~~~~~~e~vg~~~~~I~~~awSPDG~~LA~~-s~dgtV~l~s~~~d~~~ 151 (1325)
+.+.+.+|||||+.|+.++.. ..|.+||+.+++...+....+.+.+.+|||||+.||.+ +.+|...+|..+-+.-.
T Consensus 196 ~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~ 275 (427)
T PRK02889 196 EPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG 275 (427)
T ss_pred CCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC
Confidence 468899999999999987743 35999999988765444445667899999999999864 66777766643221101
Q ss_pred eeeccccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeecCCCCceeEEEEc
Q 000731 152 ENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWM 231 (1325)
Q Consensus 152 e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~~~v~~laws 231 (1325)
...+. .+.......+|+|||++|++++.. .+.-.|.+.+..+|....... ..+.....+||
T Consensus 276 ~~~lt--------------~~~~~~~~~~wSpDG~~l~f~s~~----~g~~~Iy~~~~~~g~~~~lt~-~g~~~~~~~~S 336 (427)
T PRK02889 276 LRRLT--------------QSSGIDTEPFFSPDGRSIYFTSDR----GGAPQIYRMPASGGAAQRVTF-TGSYNTSPRIS 336 (427)
T ss_pred cEECC--------------CCCCCCcCeEEcCCCCEEEEEecC----CCCcEEEEEECCCCceEEEec-CCCCcCceEEC
Confidence 11111 111233568899999999844321 122344444554555443322 12233468999
Q ss_pred cCCCeEEEEecCCCCCCCCeEEEEeCCCceEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeEE
Q 000731 232 PSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYL 311 (1325)
Q Consensus 232 PdG~~IAs~~~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~n~~wyl 311 (1325)
|||++||.++...+ ...|.+|+.++..... +.. .......+|||||+.|+..+.+++...+.+-+.... .
T Consensus 337 pDG~~Ia~~s~~~g---~~~I~v~d~~~g~~~~--lt~--~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~g~---~ 406 (427)
T PRK02889 337 PDGKLLAYISRVGG---AFKLYVQDLATGQVTA--LTD--TTRDESPSFAPNGRYILYATQQGGRSVLAAVSSDGR---I 406 (427)
T ss_pred CCCCEEEEEEccCC---cEEEEEEECCCCCeEE--ccC--CCCccCceECCCCCEEEEEEecCCCEEEEEEECCCC---c
Confidence 99999998876432 3468889865433222 221 123467899999999999887763333333333221 1
Q ss_pred EeEEEEecCCcEEEEEcc
Q 000731 312 KYEIRYLRRDGIRFMWHP 329 (1325)
Q Consensus 312 kqel~~~~~~~~~v~Wsp 329 (1325)
.+.+..+........|+|
T Consensus 407 ~~~l~~~~g~~~~p~wsp 424 (427)
T PRK02889 407 KQRLSVQGGDVREPSWGP 424 (427)
T ss_pred eEEeecCCCCCCCCccCC
Confidence 223322222234567776
No 145
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.54 E-value=3.7e-13 Score=146.96 Aligned_cols=240 Identities=14% Similarity=0.096 Sum_probs=165.5
Q ss_pred CEEEEEEccCCCEEEEEECCCcEEEEeCCCCeE-EEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEe-ecCceeeeee
Q 000731 77 SITAFDYLMEKEALIVGTSSGLLLLHSVDGNAT-EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMT-HDWDLLYENP 154 (1325)
Q Consensus 77 ~V~~v~~spdg~~La~as~dG~I~lw~~~~~~~-e~vg~~~~~I~~~awSPDG~~LA~~s~dgtV~l~s-~~~d~~~e~~ 154 (1325)
.-.++.|++-|..||+|-.||.|.|||..|..+ ..++.|-..|.+++|||||+.|.++|.|..|++|+ ..++++.++.
T Consensus 25 ~a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir 104 (405)
T KOG1273|consen 25 LAECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR 104 (405)
T ss_pred ccceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE
Confidence 378999999999999999999999999999665 47788889999999999999999999999999987 4455544433
Q ss_pred c---------cccCCCceec--------cCccc-------cC-CC-----CeEEEEEecCCcEEEEeeccccccCCCCEE
Q 000731 155 L---------EELAEGFDVH--------EPELS-------SS-FS-----FKSPISWRGDGKYFATLSEFCNSSKLHKRL 204 (1325)
Q Consensus 155 l---------~~~~~~~~Vs--------~tqf~-------~~-~~-----~i~~isWspDG~~lAtvss~d~~~~~d~~i 204 (1325)
+ |+....+.|- -.+|. +. ++ ......|.+-|+|+. +| ++.|.+
T Consensus 105 f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIi-tG------tsKGkl 177 (405)
T KOG1273|consen 105 FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYII-TG------TSKGKL 177 (405)
T ss_pred ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEE-Ee------cCcceE
Confidence 3 2222111110 00111 00 11 112234778889988 65 345899
Q ss_pred EEEECCCCceeeeecCCC-CceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeCCCceE----EEEEeccCCCC-----c
Q 000731 205 KVWERDSGTLQASSELKA-FMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLER----SSFDINEQIDS-----T 274 (1325)
Q Consensus 205 rVWd~~~G~l~~t~e~~~-~~v~~lawsPdG~~IAs~~~d~~~~~~~~V~~~e~nGl~~----~~f~l~~~~~~-----~ 274 (1325)
-|+|.++-++.+.+.-.. ..+..|-++-.|+.++.-+.| ..|+.+|.....+ ++....-.-.. .
T Consensus 178 lv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsD------RvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~ 251 (405)
T KOG1273|consen 178 LVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSD------RVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQ 251 (405)
T ss_pred EEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCC------ceEEEEehhhhcccCccCCcChhHHHHHHHhhhh
Confidence 999998888888766444 567899999999999887765 5799998532211 12111000011 2
Q ss_pred EEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeEEEeEEEEecCCc-EEEEEccCCCc
Q 000731 275 VELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDG-IRFMWHPTKPL 333 (1325)
Q Consensus 275 V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~n~~wylkqel~~~~~~~-~~v~Wsp~~~~ 333 (1325)
-..+.||.||.++..++. ..|.+.||..+.+. |.+.+.+..++- ..|.|||-.|.
T Consensus 252 Wk~ccfs~dgeYv~a~s~--~aHaLYIWE~~~Gs--LVKILhG~kgE~l~DV~whp~rp~ 307 (405)
T KOG1273|consen 252 WKKCCFSGDGEYVCAGSA--RAHALYIWEKSIGS--LVKILHGTKGEELLDVNWHPVRPI 307 (405)
T ss_pred hhheeecCCccEEEeccc--cceeEEEEecCCcc--eeeeecCCchhheeecccccceee
Confidence 346788999999988874 35789999987553 455555543333 77899998875
No 146
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.52 E-value=8.3e-13 Score=156.75 Aligned_cols=228 Identities=11% Similarity=0.100 Sum_probs=177.5
Q ss_pred Eeee-cCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEEEeC
Q 000731 26 SALD-IEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSV 104 (1325)
Q Consensus 26 ~~~d-~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~V~~v~~spdg~~La~as~dG~I~lw~~ 104 (1325)
.+|. .|+.++++++.|..|+.|.+ .+.+- .-+ |++| ...|.+++..-++. |++||-|.|+++|-.
T Consensus 64 i~y~e~~~~~l~~g~~D~~i~v~~~--~~~~P---~~~----LkgH----~snVC~ls~~~~~~-~iSgSWD~TakvW~~ 129 (745)
T KOG0301|consen 64 ICYAESDKGRLVVGGMDTTIIVFKL--SQAEP---LYT----LKGH----KSNVCSLSIGEDGT-LISGSWDSTAKVWRI 129 (745)
T ss_pred ceeccccCcceEeecccceEEEEec--CCCCc---hhh----hhcc----ccceeeeecCCcCc-eEecccccceEEecc
Confidence 4555 67788999999999999988 23221 122 5666 45899998888887 899999999999987
Q ss_pred CCCeEEEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeeeccccCCCceeccCccccCCCCeEEEEEecC
Q 000731 105 DGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGD 184 (1325)
Q Consensus 105 ~~~~~e~vg~~~~~I~~~awSPDG~~LA~~s~dgtV~l~s~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspD 184 (1325)
......+.| |...|++++.=|++ .+++|++|.+|++|.- ... +. .|.+|.+-|..++.=+|
T Consensus 130 ~~l~~~l~g-H~asVWAv~~l~e~-~~vTgsaDKtIklWk~-~~~-----l~-----------tf~gHtD~VRgL~vl~~ 190 (745)
T KOG0301|consen 130 GELVYSLQG-HTASVWAVASLPEN-TYVTGSADKTIKLWKG-GTL-----LK-----------TFSGHTDCVRGLAVLDD 190 (745)
T ss_pred hhhhcccCC-cchheeeeeecCCC-cEEeccCcceeeeccC-Cch-----hh-----------hhccchhheeeeEEecC
Confidence 543333444 69999999999998 8899999999999843 222 22 35578889999999999
Q ss_pred CcEEEEeeccccccCCCCEEEEEECCCCceeeeecCCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeCCCceEEE
Q 000731 185 GKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSS 264 (1325)
Q Consensus 185 G~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~~~v~~lawsPdG~~IAs~~~d~~~~~~~~V~~~e~nGl~~~~ 264 (1325)
+.++- ++ .|+.||.|+. +|+++....+|...+.+++-.+++..|+|++.| .++++|... ...+.
T Consensus 191 ~~flS-cs-------NDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gED------rtlriW~~~-e~~q~ 254 (745)
T KOG0301|consen 191 SHFLS-CS-------NDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGED------RTLRIWKKD-ECVQV 254 (745)
T ss_pred CCeEe-ec-------CCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCC------ceEEEeecC-ceEEE
Confidence 88765 53 4699999999 999999999999999999999999999999986 579999865 22233
Q ss_pred EEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCee
Q 000731 265 FDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHW 309 (1325)
Q Consensus 265 f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~n~~w 309 (1325)
.++| +..|+++..=++|++ ++|++|+ .|++|+.....|
T Consensus 255 I~lP---ttsiWsa~~L~NgDI-vvg~SDG---~VrVfT~~k~R~ 292 (745)
T KOG0301|consen 255 ITLP---TTSIWSAKVLLNGDI-VVGGSDG---RVRVFTVDKDRK 292 (745)
T ss_pred EecC---ccceEEEEEeeCCCE-EEeccCc---eEEEEEeccccc
Confidence 3333 346899988899985 5667777 899999875443
No 147
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.51 E-value=1.6e-12 Score=158.79 Aligned_cols=223 Identities=17% Similarity=0.146 Sum_probs=140.4
Q ss_pred CCEEEEEEccCCCEEEEEECC---CcEEEEeCCCCeEEEeceecCcEEEEEEcCCCCeEEEE-eCCc--cEEEEeecCce
Q 000731 76 DSITAFDYLMEKEALIVGTSS---GLLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVT-TGFG--QILVMTHDWDL 149 (1325)
Q Consensus 76 ~~V~~v~~spdg~~La~as~d---G~I~lw~~~~~~~e~vg~~~~~I~~~awSPDG~~LA~~-s~dg--tV~l~s~~~d~ 149 (1325)
..+.+.+|+|||+.|+.++.. ..|.+||+.+++...+..+.+...+.+|||||+.|+.+ +.+| .|.+|+.....
T Consensus 204 ~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~ 283 (433)
T PRK04922 204 EPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQ 283 (433)
T ss_pred CccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCC
Confidence 468899999999999988743 46999999987766544445556689999999988765 4455 46666432111
Q ss_pred eeeeeccccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeecCCCCceeEEE
Q 000731 150 LYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLE 229 (1325)
Q Consensus 150 ~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~~~v~~la 229 (1325)
+. .+. .+......++|+|||++|++++.. .+...|.++|..+|+...... .......++
T Consensus 284 ~~--~lt--------------~~~~~~~~~~~spDG~~l~f~sd~----~g~~~iy~~dl~~g~~~~lt~-~g~~~~~~~ 342 (433)
T PRK04922 284 LT--RLT--------------NHFGIDTEPTWAPDGKSIYFTSDR----GGRPQIYRVAASGGSAERLTF-QGNYNARAS 342 (433)
T ss_pred eE--ECc--------------cCCCCccceEECCCCCEEEEEECC----CCCceEEEEECCCCCeEEeec-CCCCccCEE
Confidence 11 111 111223578999999999844321 123467778876676544322 223345789
Q ss_pred EccCCCeEEEEecCCCCCCCCeEEEEeCCCceEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCee
Q 000731 230 WMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHW 309 (1325)
Q Consensus 230 wsPdG~~IAs~~~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~n~~w 309 (1325)
|||||+.||.++.+.+ ...|.+|+..+..... +. + .....+.+|||||+.|+..+.+++...+.+|+..+.
T Consensus 343 ~SpDG~~Ia~~~~~~~---~~~I~v~d~~~g~~~~--Lt-~-~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~-- 413 (433)
T PRK04922 343 VSPDGKKIAMVHGSGG---QYRIAVMDLSTGSVRT--LT-P-GSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGR-- 413 (433)
T ss_pred ECCCCCEEEEEECCCC---ceeEEEEECCCCCeEE--CC-C-CCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC--
Confidence 9999999998765422 3578899975433322 22 1 123557899999999998887654445777776542
Q ss_pred EEEeEEEEecCCcEEEEEcc
Q 000731 310 YLKYEIRYLRRDGIRFMWHP 329 (1325)
Q Consensus 310 ylkqel~~~~~~~~~v~Wsp 329 (1325)
..+.+..+........|+|
T Consensus 414 -~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 414 -VRQRLVSADGEVREPAWSP 432 (433)
T ss_pred -ceEEcccCCCCCCCCccCC
Confidence 1233332222225567776
No 148
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.51 E-value=2.3e-12 Score=139.56 Aligned_cols=311 Identities=12% Similarity=0.083 Sum_probs=193.0
Q ss_pred ceeEEeee-cCCCEEEEEeCCCcEEEEecccccccccce-eec-cccccccccCCCCCCEEEEEEcc-CCCEEEEEECCC
Q 000731 22 ILQFSALD-IEQNRLFFASSANNIYSAQLSSFQNERASI-KTA-ISAEIEHIDLEPGDSITAFDYLM-EKEALIVGTSSG 97 (1325)
Q Consensus 22 ~~~~~~~d-~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~-~~~-l~~~l~~~~~~~~~~V~~v~~sp-dg~~La~as~dG 97 (1325)
.+..+.+| +++..+.++..|+.|..||+-..+...... |.+ +-.--+.|+-...-.|.++.|.| |.-++.++|-|.
T Consensus 45 svNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDh 124 (397)
T KOG4283|consen 45 SVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDH 124 (397)
T ss_pred ccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecccccc
Confidence 78888898 567778888889999999983111100000 100 00000111111123699999999 556888999999
Q ss_pred cEEEEeCCCCeEEEeceecCcEEEEEEcCCC---CeEEEEeCCccEEEEeecCceeeeeeccccCCCceeccCccccCCC
Q 000731 98 LLLLHSVDGNATEVVGRVEGGVRFISPSPDG---DLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFS 174 (1325)
Q Consensus 98 ~I~lw~~~~~~~e~vg~~~~~I~~~awSPDG---~~LA~~s~dgtV~l~s~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~ 174 (1325)
++++||.+|-+.-..=..++.|.+-+|||=. .++|.|+.|-+|++ -|..++..-|... +|.+
T Consensus 125 tlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrL----CDi~SGs~sH~Ls-----------GHr~ 189 (397)
T KOG4283|consen 125 TLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRL----CDIASGSFSHTLS-----------GHRD 189 (397)
T ss_pred eEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEE----EeccCCcceeeec-----------cccC
Confidence 9999999986654333467889999999964 47888888888866 3444544444433 7889
Q ss_pred CeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCC-ceeeeecCCCCceeEEEEccCCCeEEEEecCCCCCCCCeEE
Q 000731 175 FKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSG-TLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIV 253 (1325)
Q Consensus 175 ~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G-~l~~t~e~~~~~v~~lawsPdG~~IAs~~~d~~~~~~~~V~ 253 (1325)
.|..+.|+|-..|+.++++ .|+.||+||.+.. -+..++..|.+
T Consensus 190 ~vlaV~Wsp~~e~vLatgs------aDg~irlWDiRrasgcf~~lD~hn~------------------------------ 233 (397)
T KOG4283|consen 190 GVLAVEWSPSSEWVLATGS------ADGAIRLWDIRRASGCFRVLDQHNT------------------------------ 233 (397)
T ss_pred ceEEEEeccCceeEEEecC------CCceEEEEEeecccceeEEeecccC------------------------------
Confidence 9999999999998764554 4689999997321 12222222221
Q ss_pred EEeCCCceEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeEEEeEEEEecCCcEEEEEccCCCc
Q 000731 254 FYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPL 333 (1325)
Q Consensus 254 ~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~n~~wylkqel~~~~~~~~~v~Wsp~~~~ 333 (1325)
.+......+..+.+.|+.++|++||.+|++.+.|. .+++|+..++.-.++.--....+......++
T Consensus 234 ------k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~---r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~----- 299 (397)
T KOG4283|consen 234 ------KRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDD---RIRVWNMESGRNTLREFGPIIHNQTTSFAVH----- 299 (397)
T ss_pred ------ccCccccccccccceeeeeeecccchhhhhccCcc---ceEEeecccCcccccccccccccccccceEE-----
Confidence 11000000112356799999999999999998887 7999999876544332211111111222222
Q ss_pred EEEEEecCCcEEEEEEEEeeeeCCCee--EEEEeCCEEEEeecCCcCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEE
Q 000731 334 QLICWTLDGQITTYNFIWTTAVMENST--ALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAI 411 (1325)
Q Consensus 334 ~L~~~~~~g~~~~~~~~~~~~~~d~~~--v~viDG~~l~lt~l~~~~vPpPm~~~~l~~~~~V~~VaFSpdg~~~~LAs~ 411 (1325)
+-+.+-.+ |+. -|.+.++ ..+..|..|.+|.. |-..|++-+|.|+- +..-++
T Consensus 300 ---~~~~~s~v----fv~--~p~~~~lall~~~sgs~ir~l~~---------------h~k~i~c~~~~~~f--q~~~tg 353 (397)
T KOG4283|consen 300 ---IQSMDSDV----FVL--FPNDGSLALLNLLEGSFVRRLST---------------HLKRINCAAYRPDF--EQCFTG 353 (397)
T ss_pred ---Eeecccce----EEE--EecCCeEEEEEccCceEEEeeec---------------ccceeeEEeecCch--hhhhcc
Confidence 11111111 111 1333232 23445666655543 34568888999998 788899
Q ss_pred ECCCcEEEEeCC
Q 000731 412 LSDGCLCVVDLP 423 (1325)
Q Consensus 412 s~Dgti~lw~~~ 423 (1325)
.-|+.|.-|...
T Consensus 354 ~~d~ni~~w~p~ 365 (397)
T KOG4283|consen 354 DMNGNIYMWSPA 365 (397)
T ss_pred ccCCcccccccc
Confidence 999999999873
No 149
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.50 E-value=3.7e-13 Score=161.23 Aligned_cols=280 Identities=13% Similarity=0.153 Sum_probs=178.2
Q ss_pred eeEEeeecCCCEEEEEeC-CCcEEEEecccccccccceeecccccccc-ccCCCCCCEEEEEEc-cCCCEEEEEECCCcE
Q 000731 23 LQFSALDIEQNRLFFASS-ANNIYSAQLSSFQNERASIKTAISAEIEH-IDLEPGDSITAFDYL-MEKEALIVGTSSGLL 99 (1325)
Q Consensus 23 ~~~~~~d~~~~~l~~~s~-~~~i~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~~~V~~v~~s-pdg~~La~as~dG~I 99 (1325)
..+++...+...|.++.- -..+|..+.+.+..+ +.+. .++ ... .-...+|.|. -+.+.||+++.+|.|
T Consensus 42 ~nAIs~nr~~~qiv~AGrs~lklyai~~~~~~~~--~~~~-----~k~kqn~--~~S~~DVkW~~~~~NlIAT~s~nG~i 112 (839)
T KOG0269|consen 42 ANAISVNRDINQIVVAGRSLLKLYAINPNDFSEK--CNHR-----FKTKQNK--FYSAADVKWGQLYSNLIATCSTNGVI 112 (839)
T ss_pred cceEeecCCcceeEEecccceeeEeeCcccCCcc--eeee-----cccccce--eeehhhcccccchhhhheeecCCCcE
Confidence 345555566555665543 334777776422222 2221 110 000 1234566665 356899999999999
Q ss_pred EEEeCCC----CeEEEeceecCcEEEEEEcCCC-CeEEEEeCCccEEEEeecCceeeeeeccccCCCceeccCccccCCC
Q 000731 100 LLHSVDG----NATEVVGRVEGGVRFISPSPDG-DLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFS 174 (1325)
Q Consensus 100 ~lw~~~~----~~~e~vg~~~~~I~~~awSPDG-~~LA~~s~dgtV~l~s~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~ 174 (1325)
.+||++- ..+..+-.|+..|+++.|++-. .+|++||.||+|++|+- -..... ..|.+...
T Consensus 113 ~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~Dl----R~~~S~-----------~t~~~nSE 177 (839)
T KOG0269|consen 113 SVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDL----RSKKSK-----------STFRSNSE 177 (839)
T ss_pred EEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEee----eccccc-----------ccccccch
Confidence 9999964 2334666789999999998864 67889999999988752 111111 11223445
Q ss_pred CeEEEEEec-CCcEEEEeeccccccCCCCEEEEEECC-CCceeeeecCCCCceeEEEEccCCCeEEEEecCCCCCCCCeE
Q 000731 175 FKSPISWRG-DGKYFATLSEFCNSSKLHKRLKVWERD-SGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSI 252 (1325)
Q Consensus 175 ~i~~isWsp-DG~~lAtvss~d~~~~~d~~irVWd~~-~G~l~~t~e~~~~~v~~lawsPdG~~IAs~~~d~~~~~~~~V 252 (1325)
.|..|.|+| +|.+|| +. .| .|.+++||.+ ..++...+..|.|.|.++.|+|++.+||+|++| ..|
T Consensus 178 SiRDV~fsp~~~~~F~-s~-~d-----sG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRD------K~v 244 (839)
T KOG0269|consen 178 SIRDVKFSPGYGNKFA-SI-HD-----SGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRD------KMV 244 (839)
T ss_pred hhhceeeccCCCceEE-Ee-cC-----CceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCC------ccE
Confidence 778999997 567787 33 22 4899999964 344455567899999999999999999999997 469
Q ss_pred EEEeCCCceEE-EEEeccCCCCcEEEEEEccCCCe-eEEEEccCCCCeEEEEEeeCCeeEEEe-EEEEecCCcEEEEEcc
Q 000731 253 VFYERNGLERS-SFDINEQIDSTVELLKWNCMSDL-LAAVVRFEEYDSVKICFFSNNHWYLKY-EIRYLRRDGIRFMWHP 329 (1325)
Q Consensus 253 ~~~e~nGl~~~-~f~l~~~~~~~V~~laWSpDg~~-LAs~~~d~~~~~VqLW~~~n~~wylkq-el~~~~~~~~~v~Wsp 329 (1325)
++|+..+-+-. ..++. ....|..|.|-|+-+. ||+.+.- ....|.+||+.- .|+.. .+.-|....+.+.|..
T Consensus 245 kiWd~t~~~~~~~~tIn--Tiapv~rVkWRP~~~~hLAtcsmv-~dtsV~VWDvrR--PYIP~~t~~eH~~~vt~i~W~~ 319 (839)
T KOG0269|consen 245 KIWDMTDSRAKPKHTIN--TIAPVGRVKWRPARSYHLATCSMV-VDTSVHVWDVRR--PYIPYATFLEHTDSVTGIAWDS 319 (839)
T ss_pred EEEeccCCCccceeEEe--ecceeeeeeeccCccchhhhhhcc-ccceEEEEeecc--ccccceeeeccCccccceeccC
Confidence 99997753322 12232 2357999999999775 5555432 233799999864 23332 2323322337788886
Q ss_pred CCCcEEEEEecCCcE
Q 000731 330 TKPLQLICWTLDGQI 344 (1325)
Q Consensus 330 ~~~~~L~~~~~~g~~ 344 (1325)
.....|...+.||.+
T Consensus 320 ~d~~~l~s~sKD~tv 334 (839)
T KOG0269|consen 320 GDRINLWSCSKDGTV 334 (839)
T ss_pred CCceeeEeecCccHH
Confidence 444444444445443
No 150
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.50 E-value=1.4e-12 Score=142.99 Aligned_cols=359 Identities=14% Similarity=0.128 Sum_probs=203.1
Q ss_pred EEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCC-EEEEEECCCcEEEEe
Q 000731 25 FSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKE-ALIVGTSSGLLLLHS 103 (1325)
Q Consensus 25 ~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~V~~v~~spdg~-~La~as~dG~I~lw~ 103 (1325)
..+|.++++-|.+++....++ =|. ++-+ +.+|..- -+.|.-|.|..|+. +||.++.+|.|.+|+
T Consensus 13 ~c~fSp~g~yiAs~~~yrlvi-Rd~--~tlq----~~qlf~c--------ldki~yieW~ads~~ilC~~yk~~~vqvws 77 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRYRLVI-RDS--ETLQ----LHQLFLC--------LDKIVYIEWKADSCHILCVAYKDPKVQVWS 77 (447)
T ss_pred ceeECCCCCeeeeeeeeEEEE-ecc--chhh----HHHHHHH--------HHHhhheeeeccceeeeeeeeccceEEEEE
Confidence 467899999999998876333 344 2322 3333322 25789999999986 678889999999999
Q ss_pred CCCCeEE--EeceecCcEEEEEEcCCCCeEEEEeC-CccEEEEeecCceeeeeeccccCCCceeccCccccCCCCeEEEE
Q 000731 104 VDGNATE--VVGRVEGGVRFISPSPDGDLLGVTTG-FGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPIS 180 (1325)
Q Consensus 104 ~~~~~~e--~vg~~~~~I~~~awSPDG~~LA~~s~-dgtV~l~s~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~is 180 (1325)
+...+.. +-.. ..|+.+++|||||+.|...|+ |-.|.+|+-.-. .+..+. +.+ ..+-.++
T Consensus 78 l~Qpew~ckIdeg-~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~--~~~~~~---~pK-----------~~~kg~~ 140 (447)
T KOG4497|consen 78 LVQPEWYCKIDEG-QAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQ--KGYLLP---HPK-----------TNVKGYA 140 (447)
T ss_pred eecceeEEEeccC-CCcceeeeECCCcceEeeeecceeEEEEEEeccc--eeEEec---ccc-----------cCceeEE
Confidence 9765432 3222 678999999999966666654 667888864321 111111 001 2346799
Q ss_pred EecCCcEEEEeeccccccCCCCE--EEEEECCCCceeeeecCCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeCC
Q 000731 181 WRGDGKYFATLSEFCNSSKLHKR--LKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERN 258 (1325)
Q Consensus 181 WspDG~~lAtvss~d~~~~~d~~--irVWd~~~G~l~~t~e~~~~~v~~lawsPdG~~IAs~~~d~~~~~~~~V~~~e~n 258 (1325)
|.|||+|-| +.+. .|+. +.|..-..-+++..+.-..-....|-|||||+.||+=..-- ...|-.+|+
T Consensus 141 f~~dg~f~a-i~sR-----rDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~L----eykv~aYe~- 209 (447)
T KOG4497|consen 141 FHPDGQFCA-ILSR-----RDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVL----EYKVYAYER- 209 (447)
T ss_pred ECCCCceee-eeec-----ccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchh----hheeeeeee-
Confidence 999999988 6541 1111 22211111122222222222236789999999998643210 122323332
Q ss_pred CceEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeEEEeEE----EEec-C-------------
Q 000731 259 GLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEI----RYLR-R------------- 320 (1325)
Q Consensus 259 Gl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~n~~wylkqel----~~~~-~------------- 320 (1325)
.-.+..++|||-|+.||+|+.|+ .+++-+- ..|---.++ .++. .
T Consensus 210 -------------~lG~k~v~wsP~~qflavGsyD~---~lrvlnh--~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~q 271 (447)
T KOG4497|consen 210 -------------GLGLKFVEWSPCNQFLAVGSYDQ---MLRVLNH--FTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQ 271 (447)
T ss_pred -------------ccceeEEEeccccceEEeeccch---hhhhhce--eeeeehhhhccchhccCchhhhhhhhhcchhh
Confidence 12478899999999999999998 5665432 223100000 0000 0
Q ss_pred -CcEEEEEccCCCcEEEEEecCCcE------------------------EEEEEEEeeeeCCCeeEEEEeC---CEEEEe
Q 000731 321 -DGIRFMWHPTKPLQLICWTLDGQI------------------------TTYNFIWTTAVMENSTALVIDG---SKILVT 372 (1325)
Q Consensus 321 -~~~~v~Wsp~~~~~L~~~~~~g~~------------------------~~~~~~~~~~~~d~~~v~viDG---~~l~lt 372 (1325)
....+.|-|...- .+.|-.+... -.....|+- |...++..++ +.+.+|
T Consensus 272 l~~~cLsf~p~~~~-a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~---Ds~y~aTrnd~~PnalW~W 347 (447)
T KOG4497|consen 272 LLHHCLSFTPTDLE-AHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSC---DSTYAATRNDKYPNALWLW 347 (447)
T ss_pred hcccccccCCCccc-cCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecC---CceEEeeecCCCCceEEEE
Confidence 0022333332210 1111111000 000111211 1222333332 346677
Q ss_pred ecCCcCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccccccCCceeEeeeccccccCcEEE
Q 000731 373 PLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIH 452 (1325)
Q Consensus 373 ~l~~~~vPpPm~~~~l~~~~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~ 452 (1325)
+++.--+ +..+....+|....|.|.. ..|++.+....+++|....+.+. -..+++| .+..
T Consensus 348 dlq~l~l-----~avLiQk~piraf~WdP~~--prL~vctg~srLY~W~psg~~~V-~vP~~GF------------~i~~ 407 (447)
T KOG4497|consen 348 DLQNLKL-----HAVLIQKHPIRAFEWDPGR--PRLVVCTGKSRLYFWAPSGPRVV-GVPKKGF------------NIQK 407 (447)
T ss_pred echhhhh-----hhhhhhccceeEEEeCCCC--ceEEEEcCCceEEEEcCCCceEE-ecCCCCc------------eeee
Confidence 7654221 1122356789999999987 78999988889999998764333 1233333 5778
Q ss_pred EEEecCCeEEEEEecC
Q 000731 453 LIWLGSHLLLSVSHHG 468 (1325)
Q Consensus 453 l~~~~d~~lla~~~~~ 468 (1325)
+.|..+|..++..+.+
T Consensus 408 l~W~~~g~~i~l~~kD 423 (447)
T KOG4497|consen 408 LQWLQPGEFIVLCGKD 423 (447)
T ss_pred EEecCCCcEEEEEcCC
Confidence 9999999988876543
No 151
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.50 E-value=2e-12 Score=159.12 Aligned_cols=233 Identities=10% Similarity=0.023 Sum_probs=174.3
Q ss_pred eeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEEE
Q 000731 23 LQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLH 102 (1325)
Q Consensus 23 ~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~V~~v~~spdg~~La~as~dG~I~lw 102 (1325)
+.+.-|. .+.+..++.++.|..|+. .++.. +...+.+| .+.|++++|..-+..|++|+.|.++++|
T Consensus 211 ~~~~q~~--~~~~~~~s~~~tl~~~~~--~~~~~------i~~~l~GH----~g~V~~l~~~~~~~~lvsgS~D~t~rvW 276 (537)
T KOG0274|consen 211 VLCLQLH--DGFFKSGSDDSTLHLWDL--NNGYL------ILTRLVGH----FGGVWGLAFPSGGDKLVSGSTDKTERVW 276 (537)
T ss_pred hhhheee--cCeEEecCCCceeEEeec--ccceE------EEeeccCC----CCCceeEEEecCCCEEEEEecCCcEEeE
Confidence 3444444 567788888998889999 55543 11225555 4789999999888999999999999999
Q ss_pred eCCCCeEE-EeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeeeccccCCCceeccCccccCCCCeEEEEE
Q 000731 103 SVDGNATE-VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISW 181 (1325)
Q Consensus 103 ~~~~~~~e-~vg~~~~~I~~~awSPDG~~LA~~s~dgtV~l~s~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isW 181 (1325)
|..++.+. +...|.+.|.++..- +-.+++||.|.||++|+-. +...++... +|.+.|.++..
T Consensus 277 d~~sg~C~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~----n~~~l~l~~-----------~h~~~V~~v~~ 339 (537)
T KOG0274|consen 277 DCSTGECTHSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVT----NGACLNLLR-----------GHTGPVNCVQL 339 (537)
T ss_pred ecCCCcEEEEecCCCceEEEEEcc--CceEeeccCCceEEEEecc----CcceEEEec-----------cccccEEEEEe
Confidence 99988875 444468889988775 4588889999999998533 344444332 46678888877
Q ss_pred ecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeecCCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeCCCce
Q 000731 182 RGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLE 261 (1325)
Q Consensus 182 spDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~~~v~~lawsPdG~~IAs~~~d~~~~~~~~V~~~e~nGl~ 261 (1325)
. +.+++ +++. |++|+|||..+|++++++.+|.+.|.++.+.+. +.+.+|+-| ..|+.|+..+.+
T Consensus 340 ~--~~~lv-sgs~------d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D------~~IkvWdl~~~~ 403 (537)
T KOG0274|consen 340 D--EPLLV-SGSY------DGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLD------TTIKVWDLRTKR 403 (537)
T ss_pred c--CCEEE-EEec------CceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeec------cceEeecCCchh
Confidence 6 66777 5544 479999999999999999999999999987666 899999986 469999987653
Q ss_pred EEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCe
Q 000731 262 RSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNH 308 (1325)
Q Consensus 262 ~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~n~~ 308 (1325)
.-..++..+ ...|.. ....++.|.+++.|+ +|++||..++.
T Consensus 404 ~c~~tl~~h-~~~v~~--l~~~~~~Lvs~~aD~---~Ik~WD~~~~~ 444 (537)
T KOG0274|consen 404 KCIHTLQGH-TSLVSS--LLLRDNFLVSSSADG---TIKLWDAEEGE 444 (537)
T ss_pred hhhhhhcCC-cccccc--cccccceeEeccccc---cEEEeecccCc
Confidence 111123332 344533 356789999999999 99999988764
No 152
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.50 E-value=4.7e-13 Score=160.35 Aligned_cols=289 Identities=15% Similarity=0.169 Sum_probs=196.2
Q ss_pred CEEEEEEccCCCEEEEEECCCcEEEEeCCC--Ce--EEE-ece---ecCcEEEEEEc-CCCCeEEEEeCCccEEEEeecC
Q 000731 77 SITAFDYLMEKEALIVGTSSGLLLLHSVDG--NA--TEV-VGR---VEGGVRFISPS-PDGDLLGVTTGFGQILVMTHDW 147 (1325)
Q Consensus 77 ~V~~v~~spdg~~La~as~dG~I~lw~~~~--~~--~e~-vg~---~~~~I~~~awS-PDG~~LA~~s~dgtV~l~s~~~ 147 (1325)
...+|+-.++-.++++|+. -..+||..+. .. +.. ++. ..-.+..+.|+ -+.++||+++..|.|.+|+-.
T Consensus 41 ~~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdln- 118 (839)
T KOG0269|consen 41 KANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLN- 118 (839)
T ss_pred ccceEeecCCcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecC-
Confidence 4667777788888888764 3567776543 11 211 121 11234567886 356899999999999998643
Q ss_pred ceeeeeeccccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeecCCCCceeE
Q 000731 148 DLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAV 227 (1325)
Q Consensus 148 d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~~~v~~ 227 (1325)
.++.+..+ +-|..|.-.+.++.|++--.++. +++ +.|++||+||.....-..++.+....+..
T Consensus 119 k~~rnk~l-----------~~f~EH~Rs~~~ldfh~tep~il-iSG-----SQDg~vK~~DlR~~~S~~t~~~nSESiRD 181 (839)
T KOG0269|consen 119 KSIRNKLL-----------TVFNEHERSANKLDFHSTEPNIL-ISG-----SQDGTVKCWDLRSKKSKSTFRSNSESIRD 181 (839)
T ss_pred ccccchhh-----------hHhhhhccceeeeeeccCCccEE-Eec-----CCCceEEEEeeecccccccccccchhhhc
Confidence 11222222 23456777889999998776666 443 46899999998777777777666677899
Q ss_pred EEEccC-CCeEEEEecCCCCCCCCeEEEEeCCCceEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeC
Q 000731 228 LEWMPS-GANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSN 306 (1325)
Q Consensus 228 lawsPd-G~~IAs~~~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~n 306 (1325)
|.|+|. |+.+|++.+ .+.+.+||.--...-++.+. .|.+.|..+.|+|++..||+|+.|+ .|+||++..
T Consensus 182 V~fsp~~~~~F~s~~d------sG~lqlWDlRqp~r~~~k~~-AH~GpV~c~nwhPnr~~lATGGRDK---~vkiWd~t~ 251 (839)
T KOG0269|consen 182 VKFSPGYGNKFASIHD------SGYLQLWDLRQPDRCEKKLT-AHNGPVLCLNWHPNREWLATGGRDK---MVKIWDMTD 251 (839)
T ss_pred eeeccCCCceEEEecC------CceEEEeeccCchhHHHHhh-cccCceEEEeecCCCceeeecCCCc---cEEEEeccC
Confidence 999995 677888766 46799999432222222222 3467899999999999999999999 999999986
Q ss_pred CeeEEEeEEEEecCCc-EEEEEccCCCcEEEEEecCCcEEEEEEEEeeeeCCCeeEEEEeCCEEEEeecCCcCCCCCcee
Q 000731 307 NHWYLKYEIRYLRRDG-IRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYL 385 (1325)
Q Consensus 307 ~~wylkqel~~~~~~~-~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDG~~l~lt~l~~~~vPpPm~~ 385 (1325)
.....+.++. ...+ ..|.|-|+.++.|+.. +.++...|.+|+++..-+|--+.
T Consensus 252 ~~~~~~~tIn--Tiapv~rVkWRP~~~~hLAtc-----------------------smv~dtsV~VWDvrRPYIP~~t~- 305 (839)
T KOG0269|consen 252 SRAKPKHTIN--TIAPVGRVKWRPARSYHLATC-----------------------SMVVDTSVHVWDVRRPYIPYATF- 305 (839)
T ss_pred CCccceeEEe--ecceeeeeeeccCccchhhhh-----------------------hccccceEEEEeeccccccceee-
Confidence 5443333332 2344 7899999988644332 23345568888888877765332
Q ss_pred eeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCC
Q 000731 386 FSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLP 423 (1325)
Q Consensus 386 ~~l~~~~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~~~ 423 (1325)
.+|.+.|..++|-... ...|-+++.||+|..-.+.
T Consensus 306 --~eH~~~vt~i~W~~~d-~~~l~s~sKD~tv~qh~~k 340 (839)
T KOG0269|consen 306 --LEHTDSVTGIAWDSGD-RINLWSCSKDGTVLQHLFK 340 (839)
T ss_pred --eccCccccceeccCCC-ceeeEeecCccHHHHhhhh
Confidence 3689999999996522 2567788888877654443
No 153
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.50 E-value=1.2e-12 Score=142.19 Aligned_cols=161 Identities=18% Similarity=0.287 Sum_probs=113.1
Q ss_pred EEEEEccCCCEEEEEEC----------CCcEEEEeC--CCCeEEEece-ecCcEEEEEEcCCCCeEEEEeC--CccEEEE
Q 000731 79 TAFDYLMEKEALIVGTS----------SGLLLLHSV--DGNATEVVGR-VEGGVRFISPSPDGDLLGVTTG--FGQILVM 143 (1325)
Q Consensus 79 ~~v~~spdg~~La~as~----------dG~I~lw~~--~~~~~e~vg~-~~~~I~~~awSPDG~~LA~~s~--dgtV~l~ 143 (1325)
..+.|+|+|+.||+-.. -|...||-+ .+...+.+.- .++.|.+++|||+|+.+|++.+ +++|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 57889999999887654 233445444 3334443321 2456999999999999988764 4689888
Q ss_pred eecCceeeeeeccccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeecCCCC
Q 000731 144 THDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAF 223 (1325)
Q Consensus 144 s~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~~ 223 (1325)
+...+++.... ...+..|.|||+|+++| +++.+ ...+.+.+||.++.+.+.+.+..
T Consensus 89 d~~~~~i~~~~------------------~~~~n~i~wsP~G~~l~-~~g~~---n~~G~l~~wd~~~~~~i~~~~~~-- 144 (194)
T PF08662_consen 89 DVKGKKIFSFG------------------TQPRNTISWSPDGRFLV-LAGFG---NLNGDLEFWDVRKKKKISTFEHS-- 144 (194)
T ss_pred cCcccEeEeec------------------CCCceEEEECCCCCEEE-EEEcc---CCCcEEEEEECCCCEEeeccccC--
Confidence 76555443332 12457899999999999 66543 23478999999888888776633
Q ss_pred ceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeCCCceEE
Q 000731 224 MGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERS 263 (1325)
Q Consensus 224 ~v~~lawsPdG~~IAs~~~d~~~~~~~~V~~~e~nGl~~~ 263 (1325)
....++|||||+++|++...+....++.+++|+-+|....
T Consensus 145 ~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~~l~ 184 (194)
T PF08662_consen 145 DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGRLLY 184 (194)
T ss_pred cEEEEEEcCCCCEEEEEEeccceeccccEEEEEecCeEeE
Confidence 3689999999999998875422223567899998886544
No 154
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.49 E-value=6.1e-12 Score=154.88 Aligned_cols=271 Identities=13% Similarity=0.064 Sum_probs=186.0
Q ss_pred CCEEEEEEccCCCEEEEEECCCcEEEEeCCCCeEE---EeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeee
Q 000731 76 DSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATE---VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYE 152 (1325)
Q Consensus 76 ~~V~~v~~spdg~~La~as~dG~I~lw~~~~~~~e---~vg~~~~~I~~~awSPDG~~LA~~s~dgtV~l~s~~~d~~~e 152 (1325)
..+++..|. ...+.+++.+++|++|+..++... ..| |.++|+++++.--+..|.+|+.|.|+++|+ ..++
T Consensus 209 ~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~G-H~g~V~~l~~~~~~~~lvsgS~D~t~rvWd----~~sg 281 (537)
T KOG0274|consen 209 HVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVG-HFGGVWGLAFPSGGDKLVSGSTDKTERVWD----CSTG 281 (537)
T ss_pred chhhhheee--cCeEEecCCCceeEEeecccceEEEeeccC-CCCCceeEEEecCCCEEEEEecCCcEEeEe----cCCC
Confidence 467777777 457889999999999999886543 455 699999999988788999999999999875 3344
Q ss_pred eeccccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeecCCCCceeEEEEcc
Q 000731 153 NPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMP 232 (1325)
Q Consensus 153 ~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~~~v~~lawsP 232 (1325)
.+.+.. .+|.+.+..+.-. +-+++ ++ +.|.+||||+.++|.++.+..+|.+.|.++...
T Consensus 282 ~C~~~l-----------~gh~stv~~~~~~--~~~~~-sg------s~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~- 340 (537)
T KOG0274|consen 282 ECTHSL-----------QGHTSSVRCLTID--PFLLV-SG------SRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD- 340 (537)
T ss_pred cEEEEe-----------cCCCceEEEEEcc--CceEe-ec------cCCceEEEEeccCcceEEEeccccccEEEEEec-
Confidence 444432 2555666666543 33444 33 356999999998899999999999999999988
Q ss_pred CCCeEEEEecCCCCCCCCeEEEEeCCCceEEEE--EeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeE
Q 000731 233 SGANIAAVYDRKSENKCPSIVFYERNGLERSSF--DINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWY 310 (1325)
Q Consensus 233 dG~~IAs~~~d~~~~~~~~V~~~e~nGl~~~~f--~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~n~~wy 310 (1325)
+.++.+|+.| ..|++|+.. .+++ .+.+ |...|.++.+.+. ..+.+++.|+ +|++||..+.. .
T Consensus 341 -~~~lvsgs~d------~~v~VW~~~---~~~cl~sl~g-H~~~V~sl~~~~~-~~~~Sgs~D~---~IkvWdl~~~~-~ 404 (537)
T KOG0274|consen 341 -EPLLVSGSYD------GTVKVWDPR---TGKCLKSLSG-HTGRVYSLIVDSE-NRLLSGSLDT---TIKVWDLRTKR-K 404 (537)
T ss_pred -CCEEEEEecC------ceEEEEEhh---hceeeeeecC-CcceEEEEEecCc-ceEEeeeecc---ceEeecCCchh-h
Confidence 8899999986 479999965 2332 2334 5778999987766 8999999998 99999998851 1
Q ss_pred EEeEEEEecCCcEEEEEccCCCcEEEEEecCCcEEEEEEEEeeeeCCCeeEE-EEeCCEEEEeecCCcCCCCCceeeeec
Q 000731 311 LKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTAL-VIDGSKILVTPLSLSLMPPPMYLFSLK 389 (1325)
Q Consensus 311 lkqel~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~-viDG~~l~lt~l~~~~vPpPm~~~~l~ 389 (1325)
+.+.+..|. .+.++ +.++ +.-++. ..|| +|++|+.... -|.++++
T Consensus 405 c~~tl~~h~----~~v~~------l~~~------------------~~~Lvs~~aD~-~Ik~WD~~~~-----~~~~~~~ 450 (537)
T KOG0274|consen 405 CIHTLQGHT----SLVSS------LLLR------------------DNFLVSSSADG-TIKLWDAEEG-----ECLRTLE 450 (537)
T ss_pred hhhhhcCCc----ccccc------cccc------------------cceeEeccccc-cEEEeecccC-----ceeeeec
Confidence 122222211 11100 1110 111111 1122 5666655432 2334443
Q ss_pred C--CCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCcc
Q 000731 390 F--PTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDML 428 (1325)
Q Consensus 390 ~--~~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~~~~~~~~ 428 (1325)
. ...|..+++. + ..+++++.||++++|++....+.
T Consensus 451 ~~~~~~v~~l~~~-~---~~il~s~~~~~~~l~dl~~~~~~ 487 (537)
T KOG0274|consen 451 GRHVGGVSALALG-K---EEILCSSDDGSVKLWDLRSGTLI 487 (537)
T ss_pred cCCcccEEEeecC-c---ceEEEEecCCeeEEEecccCchh
Confidence 3 3678888876 2 47888889999999999764333
No 155
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.49 E-value=7.9e-10 Score=128.96 Aligned_cols=286 Identities=19% Similarity=0.248 Sum_probs=185.4
Q ss_pred CCCEEEEEEccCCCEEEEEECCCcEEEEeCCCCe--EEEeceec-CcEEEEEE-cCCCC-eEEEEeC-CccEEEEeecC-
Q 000731 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNA--TEVVGRVE-GGVRFISP-SPDGD-LLGVTTG-FGQILVMTHDW- 147 (1325)
Q Consensus 75 ~~~V~~v~~spdg~~La~as~dG~I~lw~~~~~~--~e~vg~~~-~~I~~~aw-SPDG~-~LA~~s~-dgtV~l~s~~~- 147 (1325)
.+.+..+.|.+.+..++.++.|+.+.+|+...+. +..+.... ..+..+.+ +|++. .++..+. |+++.+|+...
T Consensus 65 ~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 144 (466)
T COG2319 65 EDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTP 144 (466)
T ss_pred cceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCC
Confidence 4689999999999999999999999999998763 44333322 36888888 99998 5555455 89999986542
Q ss_pred -ceeeeeeccccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeecCCCCcee
Q 000731 148 -DLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGA 226 (1325)
Q Consensus 148 -d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~~~v~ 226 (1325)
....... .|...+..++|+|+|.+++ +++. .++.+++|+..++....+..+|...+.
T Consensus 145 ~~~~~~~~----------------~~~~~v~~~~~~~~~~~~~-~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~v~ 202 (466)
T COG2319 145 GKLIRTLE----------------GHSESVTSLAFSPDGKLLA-SGSS-----LDGTIKLWDLRTGKPLSTLAGHTDPVS 202 (466)
T ss_pred CeEEEEEe----------------cCcccEEEEEECCCCCEEE-ecCC-----CCCceEEEEcCCCceEEeeccCCCceE
Confidence 2222222 3445678999999999877 4421 268999999977888888888999999
Q ss_pred EEEEccCCC-eEEEEecCCCCCCCCeEEEEeCC-CceEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEe
Q 000731 227 VLEWMPSGA-NIAAVYDRKSENKCPSIVFYERN-GLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFF 304 (1325)
Q Consensus 227 ~lawsPdG~-~IAs~~~d~~~~~~~~V~~~e~n-Gl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~ 304 (1325)
.++|+|+|. .+++++.+ ..|.+|+.. |..... .+..+ ...+ -..|+|++..+++++.|+ .+++|+.
T Consensus 203 ~~~~~~~~~~~~~~~~~d------~~i~~wd~~~~~~~~~-~~~~~-~~~~-~~~~~~~~~~~~~~~~d~---~~~~~~~ 270 (466)
T COG2319 203 SLAFSPDGGLLIASGSSD------GTIRLWDLSTGKLLRS-TLSGH-SDSV-VSSFSPDGSLLASGSSDG---TIRLWDL 270 (466)
T ss_pred EEEEcCCcceEEEEecCC------CcEEEEECCCCcEEee-ecCCC-Ccce-eEeECCCCCEEEEecCCC---cEEEeee
Confidence 999999998 55654553 568899744 322221 12222 2222 228999999999999888 9999998
Q ss_pred eCCeeEEEeEEEEecCCcEEEEEccCCCcEEEEEecCCcEEEEEEEEeeeeCCCeeEEEEeCCEEEEeecCCcCCCCCce
Q 000731 305 SNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMY 384 (1325)
Q Consensus 305 ~n~~wylkqel~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDG~~l~lt~l~~~~vPpPm~ 384 (1325)
..... ....+..+......+.|+|++.. +.....++. +.+|++........+.
T Consensus 271 ~~~~~-~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~d~~-------------------------~~~~~~~~~~~~~~~~ 323 (466)
T COG2319 271 RSSSS-LLRTLSGHSSSVLSVAFSPDGKL-LASGSSDGT-------------------------VRLWDLETGKLLSSLT 323 (466)
T ss_pred cCCCc-EEEEEecCCccEEEEEECCCCCE-EEEeeCCCc-------------------------EEEEEcCCCceEEEee
Confidence 75432 11112222122266788885544 333333332 2222222111111111
Q ss_pred eeeecCCCCEEEEEEecCCCCCEEEEE-ECCCcEEEEeCCCC
Q 000731 385 LFSLKFPTAVTEMAFYSKSSKNCLAAI-LSDGCLCVVDLPAP 425 (1325)
Q Consensus 385 ~~~l~~~~~V~~VaFSpdg~~~~LAs~-s~Dgti~lw~~~~~ 425 (1325)
...|...|..++|++++ ..++.+ ..|+.+.+|+....
T Consensus 324 --~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~ 361 (466)
T COG2319 324 --LKGHEGPVSSLSFSPDG--SLLVSGGSDDGTIRLWDLRTG 361 (466)
T ss_pred --ecccCCceEEEEECCCC--CEEEEeecCCCcEEeeecCCC
Confidence 12345568899994332 355555 68899999998753
No 156
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.49 E-value=1.6e-12 Score=148.76 Aligned_cols=238 Identities=14% Similarity=0.213 Sum_probs=163.6
Q ss_pred CEEEEEeCCCcEEEEecccccccccceee-c-cc-cccccccCCCCCCEEEEEEccCCC-EEEEEECCCcEEEEeCCCCe
Q 000731 33 NRLFFASSANNIYSAQLSSFQNERASIKT-A-IS-AEIEHIDLEPGDSITAFDYLMEKE-ALIVGTSSGLLLLHSVDGNA 108 (1325)
Q Consensus 33 ~~l~~~s~~~~i~~~~~~~~~~~~~~~~~-~-l~-~~l~~~~~~~~~~V~~v~~spdg~-~La~as~dG~I~lw~~~~~~ 108 (1325)
+.|.+.+..+.++.||.+ ......... . .| -.|++|. +.=.++.|++..+ .|++++.|++|.+||++...
T Consensus 138 ~iVAt~t~~~dv~Vfd~t--k~~s~~~~~~~~~Pdl~L~gH~----~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~ 211 (422)
T KOG0264|consen 138 NIVATKTSSGDVYVFDYT--KHPSKPKASGECRPDLRLKGHE----KEGYGLSWNRQQEGTLLSGSDDHTICLWDINAES 211 (422)
T ss_pred cEEEecCCCCCEEEEEec--cCCCcccccccCCCceEEEeec----ccccccccccccceeEeeccCCCcEEEEeccccc
Confidence 455556777789999983 222101110 0 00 0144442 2245688888654 78899999999999986421
Q ss_pred --------EEEeceecCcEEEEEEcCC-CCeEEEEeCCccEEEEe-ecCceeeeeeccccCCCceeccCccccCCCCeEE
Q 000731 109 --------TEVVGRVEGGVRFISPSPD-GDLLGVTTGFGQILVMT-HDWDLLYENPLEELAEGFDVHEPELSSSFSFKSP 178 (1325)
Q Consensus 109 --------~e~vg~~~~~I~~~awSPD-G~~LA~~s~dgtV~l~s-~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~ 178 (1325)
......|++.|..++|.|- ..++++++.|+.+.||+ |.| ...+-+.. .+|+..+.+
T Consensus 212 ~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~---~~~~~~~~-----------~ah~~~vn~ 277 (422)
T KOG0264|consen 212 KEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSN---TSKPSHSV-----------KAHSAEVNC 277 (422)
T ss_pred cCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCC---CCCCcccc-----------cccCCceeE
Confidence 1244457899999999995 56789999999999985 443 22222221 267788999
Q ss_pred EEEecCCcEEEEeeccccccCCCCEEEEEECCCC-ceeeeecCCCCceeEEEEccCCC-eEEEEecCCCCCCCCeEEEEe
Q 000731 179 ISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSG-TLQASSELKAFMGAVLEWMPSGA-NIAAVYDRKSENKCPSIVFYE 256 (1325)
Q Consensus 179 isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G-~l~~t~e~~~~~v~~lawsPdG~-~IAs~~~d~~~~~~~~V~~~e 256 (1325)
++|+|=+.++.++++ .|++|++||+++- +.+.++++|..-|..|.|||.-. .+||++.| +.+.+||
T Consensus 278 ~~fnp~~~~ilAT~S------~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D------~rl~vWD 345 (422)
T KOG0264|consen 278 VAFNPFNEFILATGS------ADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTD------RRLNVWD 345 (422)
T ss_pred EEeCCCCCceEEecc------CCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccC------CcEEEEe
Confidence 999997765542554 3689999998643 46778899999999999999876 56777764 5799998
Q ss_pred CC--CceEE---------E--EEeccCCCCcEEEEEEccCCC-eeEEEEccCCCCeEEEEEeeC
Q 000731 257 RN--GLERS---------S--FDINEQIDSTVELLKWNCMSD-LLAAVVRFEEYDSVKICFFSN 306 (1325)
Q Consensus 257 ~n--Gl~~~---------~--f~l~~~~~~~V~~laWSpDg~-~LAs~~~d~~~~~VqLW~~~n 306 (1325)
.+ |.... + | +.+.+...|..++|+|+-- .+|+++.|. ++|||.+..
T Consensus 346 ls~ig~eq~~eda~dgppEllF-~HgGH~~kV~DfsWnp~ePW~I~SvaeDN---~LqIW~~s~ 405 (422)
T KOG0264|consen 346 LSRIGEEQSPEDAEDGPPELLF-IHGGHTAKVSDFSWNPNEPWTIASVAEDN---ILQIWQMAE 405 (422)
T ss_pred ccccccccChhhhccCCcceeE-EecCcccccccccCCCCCCeEEEEecCCc---eEEEeeccc
Confidence 54 22110 0 2 2234567899999999876 577888887 999999975
No 157
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.48 E-value=5.3e-12 Score=138.46 Aligned_cols=275 Identities=11% Similarity=0.103 Sum_probs=190.3
Q ss_pred ccccc-ccceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEE
Q 000731 15 ELQSK-DEILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVG 93 (1325)
Q Consensus 15 ~~~~~-~~~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~V~~v~~spdg~~La~a 93 (1325)
+++.| .+.+..+-|++.++.|.+.|=|+.+..||.+ ..+. +.. +..+..+++.+|.++. .+++|
T Consensus 7 ~l~npP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~--~~~l--~~~----------~~~~~plL~c~F~d~~-~~~~G 71 (323)
T KOG1036|consen 7 ELENPPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVP--ANSL--KLK----------FKHGAPLLDCAFADES-TIVTG 71 (323)
T ss_pred ccCCCChhceeeEEEcCcCCcEEEEeccCcEEEEecc--chhh--hhh----------eecCCceeeeeccCCc-eEEEe
Confidence 34333 3388889999889999999889999999983 3321 111 2225689999999965 56789
Q ss_pred ECCCcEEEEeCCCCeEEEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeeeccccCCCceeccCccccCC
Q 000731 94 TSSGLLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSF 173 (1325)
Q Consensus 94 s~dG~I~lw~~~~~~~e~vg~~~~~I~~~awSPDG~~LA~~s~dgtV~l~s~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~ 173 (1325)
+.||.|+++|++++....+|.|+.+|.|+..+|--..+++||.|++|++|+ +-........+. .
T Consensus 72 ~~dg~vr~~Dln~~~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD----~R~~~~~~~~d~------------~ 135 (323)
T KOG1036|consen 72 GLDGQVRRYDLNTGNEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWD----PRNKVVVGTFDQ------------G 135 (323)
T ss_pred ccCceEEEEEecCCcceeeccCCCceEEEEeeccCCeEEEcccCccEEEEe----cccccccccccc------------C
Confidence 999999999999998889999999999999999988999999999999875 322222221111 1
Q ss_pred CCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeee--ecCCCCceeEEEEccCCCeEEEEecCCCCCCCCe
Q 000731 174 SFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQAS--SELKAFMGAVLEWMPSGANIAAVYDRKSENKCPS 251 (1325)
Q Consensus 174 ~~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t--~e~~~~~v~~lawsPdG~~IAs~~~d~~~~~~~~ 251 (1325)
..|.+++-+ |..|+ |+. .++.|.+||..+-..... -.+....+.+|+.-|+|.=.|+++-++ +..
T Consensus 136 kkVy~~~v~--g~~Lv-Vg~------~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieG----RVa 202 (323)
T KOG1036|consen 136 KKVYCMDVS--GNRLV-VGT------SDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEG----RVA 202 (323)
T ss_pred ceEEEEecc--CCEEE-Eee------cCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecc----eEE
Confidence 245666554 44566 653 369999999855433221 123556789999999888777777653 455
Q ss_pred EEEEeCC-CceEEEEEec-----cCC---CCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeEEEeEEEEecCCc
Q 000731 252 IVFYERN-GLERSSFDIN-----EQI---DSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDG 322 (1325)
Q Consensus 252 V~~~e~n-Gl~~~~f~l~-----~~~---~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~n~~wylkqel~~~~~~~ 322 (1325)
|-++|.. -.....|.++ ..+ -..|++|+|+|-...||+|+.|| .|-+|+..|.+- |+|--.+ +.+.
T Consensus 203 vE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG---~V~~Wd~~~rKr-l~q~~~~-~~SI 277 (323)
T KOG1036|consen 203 VEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDG---IVNIWDLFNRKR-LKQLAKY-ETSI 277 (323)
T ss_pred EEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCc---eEEEccCcchhh-hhhccCC-CCce
Confidence 6677643 1111223332 111 14699999999999999999999 999999988542 2221112 2334
Q ss_pred EEEEEccCCCcEEEEEe
Q 000731 323 IRFMWHPTKPLQLICWT 339 (1325)
Q Consensus 323 ~~v~Wsp~~~~~L~~~~ 339 (1325)
.+++|+-++.. |++++
T Consensus 278 ~slsfs~dG~~-LAia~ 293 (323)
T KOG1036|consen 278 SSLSFSMDGSL-LAIAS 293 (323)
T ss_pred EEEEeccCCCe-EEEEe
Confidence 77888887754 66665
No 158
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.48 E-value=1.5e-12 Score=141.77 Aligned_cols=242 Identities=14% Similarity=0.131 Sum_probs=176.6
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEE
Q 000731 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1325)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~V~~v~~spdg~~La~as~dG~I~l 101 (1325)
.+.++.|-|-..+|.++|.|+.+..+|.+..+-+.. ++ .|.....|.++.|+|.|++|++|+.--+++|
T Consensus 174 evn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA---------~K--~~qd~~~vrsiSfHPsGefllvgTdHp~~rl 242 (430)
T KOG0640|consen 174 EVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRA---------FK--VFQDTEPVRSISFHPSGEFLLVGTDHPTLRL 242 (430)
T ss_pred cccceeecchhheEEeccCCCeEEEEecccHHHHHH---------HH--HhhccceeeeEeecCCCceEEEecCCCceeE
Confidence 677888989889999999999999999842111111 11 1222457999999999999999999999999
Q ss_pred EeCCCCeEEE----eceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeeeccccCCCceeccCccccCC-CCe
Q 000731 102 HSVDGNATEV----VGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSF-SFK 176 (1325)
Q Consensus 102 w~~~~~~~e~----vg~~~~~I~~~awSPDG~~LA~~s~dgtV~l~s~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~-~~i 176 (1325)
||++|-++-. -..|.++|+++.+|+.|.+-++++.||.|++| |-++..++.+.. ..|+ ..|
T Consensus 243 Ydv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~Iklw----DGVS~rCv~t~~----------~AH~gsev 308 (430)
T KOG0640|consen 243 YDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLW----DGVSNRCVRTIG----------NAHGGSEV 308 (430)
T ss_pred EeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEee----ccccHHHHHHHH----------hhcCCcee
Confidence 9999876532 22468899999999999999999999999775 666666655433 0222 357
Q ss_pred EEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeecC--CCCc---eeEEEEccCCCeEEEEecCCCCCCCCe
Q 000731 177 SPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSEL--KAFM---GAVLEWMPSGANIAAVYDRKSENKCPS 251 (1325)
Q Consensus 177 ~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~--~~~~---v~~lawsPdG~~IAs~~~d~~~~~~~~ 251 (1325)
++.-|.-||+|+. +| +.|.++++|...+|..+....+ ..|. -..-.|+-.-.++...... .+.
T Consensus 309 cSa~Ftkn~kyiL-sS------G~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEa-----s~s 376 (430)
T KOG0640|consen 309 CSAVFTKNGKYIL-SS------GKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEA-----SNS 376 (430)
T ss_pred eeEEEccCCeEEe-ec------CCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccc-----cCc
Confidence 9999999999998 55 3468999999989998776433 2222 1233455444454443322 345
Q ss_pred EEEEe-CCCceEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEee
Q 000731 252 IVFYE-RNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFS 305 (1325)
Q Consensus 252 V~~~e-~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~ 305 (1325)
+.-|| ||+.+... +...+.+.|..+.-||.+..+.+++.|. .+++|...
T Consensus 377 lcsWdaRtadr~~l--~slgHn~a~R~i~HSP~~p~FmTcsdD~---raRFWyrr 426 (430)
T KOG0640|consen 377 LCSWDARTADRVAL--LSLGHNGAVRWIVHSPVEPAFMTCSDDF---RARFWYRR 426 (430)
T ss_pred eeeccccchhhhhh--cccCCCCCceEEEeCCCCCceeeecccc---eeeeeeec
Confidence 77787 66655442 2334567899999999999999999998 89999754
No 159
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.48 E-value=4.6e-11 Score=140.56 Aligned_cols=276 Identities=14% Similarity=0.077 Sum_probs=163.4
Q ss_pred EEEECCCcEEEEeCCC-CeEEEece--ecCcEEEEEEcCCCCeEEEEe-CCccEEEEeecCc-eeeeeeccccCCCceec
Q 000731 91 IVGTSSGLLLLHSVDG-NATEVVGR--VEGGVRFISPSPDGDLLGVTT-GFGQILVMTHDWD-LLYENPLEELAEGFDVH 165 (1325)
Q Consensus 91 a~as~dG~I~lw~~~~-~~~e~vg~--~~~~I~~~awSPDG~~LA~~s-~dgtV~l~s~~~d-~~~e~~l~~~~~~~~Vs 165 (1325)
++...+|.|.+|+.++ +.++.+.. +.++...+++||||+.|.+++ .++.|.+|..+-+ .+....-..
T Consensus 6 ~~~~~~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-------- 77 (330)
T PRK11028 6 IASPESQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-------- 77 (330)
T ss_pred EEcCCCCCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec--------
Confidence 3446789999999964 44443222 235688899999999997775 4777877754311 011110000
Q ss_pred cCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECC-CCce---eeeecCCCCceeEEEEccCCCeEEEEe
Q 000731 166 EPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERD-SGTL---QASSELKAFMGAVLEWMPSGANIAAVY 241 (1325)
Q Consensus 166 ~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~-~G~l---~~t~e~~~~~v~~lawsPdG~~IAs~~ 241 (1325)
..+....++|+|||+++. ++.. .++.|.+|+.+ +|.+ .....+.. ....++++|+|+++.++.
T Consensus 78 ------~~~~p~~i~~~~~g~~l~-v~~~-----~~~~v~v~~~~~~g~~~~~~~~~~~~~-~~~~~~~~p~g~~l~v~~ 144 (330)
T PRK11028 78 ------LPGSPTHISTDHQGRFLF-SASY-----NANCVSVSPLDKDGIPVAPIQIIEGLE-GCHSANIDPDNRTLWVPC 144 (330)
T ss_pred ------CCCCceEEEECCCCCEEE-EEEc-----CCCeEEEEEECCCCCCCCceeeccCCC-cccEeEeCCCCCEEEEee
Confidence 012346899999999988 5542 35899999885 3432 22222222 347789999999997766
Q ss_pred cCCCCCCCCeEEEEeCC--CceEEE--EEeccCCCCcEEEEEEccCCCeeEEEEc-cCCCCeEEEEEeeC--CeeEEEeE
Q 000731 242 DRKSENKCPSIVFYERN--GLERSS--FDINEQIDSTVELLKWNCMSDLLAAVVR-FEEYDSVKICFFSN--NHWYLKYE 314 (1325)
Q Consensus 242 ~d~~~~~~~~V~~~e~n--Gl~~~~--f~l~~~~~~~V~~laWSpDg~~LAs~~~-d~~~~~VqLW~~~n--~~wylkqe 314 (1325)
.. .+.|.+|+.+ |..... ...+.+.......++|+|||++|.++.. ++ +|.+|++.. ....+.+.
T Consensus 145 ~~-----~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~---~v~v~~~~~~~~~~~~~~~ 216 (330)
T PRK11028 145 LK-----EDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNS---SVDVWQLKDPHGEIECVQT 216 (330)
T ss_pred CC-----CCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCC---EEEEEEEeCCCCCEEEEEE
Confidence 54 4679999864 321100 0011111234678999999999988876 44 899999973 34334444
Q ss_pred EEEecCC------cEEEEEccCCCcEEEEEec-CCcEEEEEEEEeeeeCCCeeEEEEeCCEEEEeecCCcCCCCCceeee
Q 000731 315 IRYLRRD------GIRFMWHPTKPLQLICWTL-DGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFS 387 (1325)
Q Consensus 315 l~~~~~~------~~~v~Wsp~~~~~L~~~~~-~g~~~~~~~~~~~~~~d~~~v~viDG~~l~lt~l~~~~vPpPm~~~~ 387 (1325)
+...+.. +..+.++|++.. +.+... ++.+. +|+++. ++..+++... +|
T Consensus 217 ~~~~p~~~~~~~~~~~i~~~pdg~~-lyv~~~~~~~I~----v~~i~~---------~~~~~~~~~~----~~------- 271 (330)
T PRK11028 217 LDMMPADFSDTRWAADIHITPDGRH-LYACDRTASLIS----VFSVSE---------DGSVLSFEGH----QP------- 271 (330)
T ss_pred EecCCCcCCCCccceeEEECCCCCE-EEEecCCCCeEE----EEEEeC---------CCCeEEEeEE----Ee-------
Confidence 4322211 135778898764 555443 23332 233221 1222222110 11
Q ss_pred ecCCCCEEEEEEecCCCCCEEEEEEC-CCcEEEEeCCC
Q 000731 388 LKFPTAVTEMAFYSKSSKNCLAAILS-DGCLCVVDLPA 424 (1325)
Q Consensus 388 l~~~~~V~~VaFSpdg~~~~LAs~s~-Dgti~lw~~~~ 424 (1325)
.....+.++|+||| +.|+++.. +++|.+|+.+.
T Consensus 272 --~~~~p~~~~~~~dg--~~l~va~~~~~~v~v~~~~~ 305 (330)
T PRK11028 272 --TETQPRGFNIDHSG--KYLIAAGQKSHHISVYEIDG 305 (330)
T ss_pred --ccccCCceEECCCC--CEEEEEEccCCcEEEEEEcC
Confidence 11233467999999 78877665 89999998863
No 160
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.48 E-value=8.3e-12 Score=152.58 Aligned_cols=205 Identities=12% Similarity=0.057 Sum_probs=133.2
Q ss_pred cEEEEeCCCCeEEEeceecCcEEEEEEcCCCCeEEEEeC---CccEEEEeecCceeeeeeccccCCCceeccCccccCCC
Q 000731 98 LLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTG---FGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFS 174 (1325)
Q Consensus 98 ~I~lw~~~~~~~e~vg~~~~~I~~~awSPDG~~LA~~s~---dgtV~l~s~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~ 174 (1325)
.|.+||.++.....+..+...|.+.+|||||+.||.++. +.+|.+|+...... ..+. .+.+
T Consensus 183 ~l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~--~~l~--------------~~~g 246 (435)
T PRK05137 183 RLAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR--ELVG--------------NFPG 246 (435)
T ss_pred EEEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE--EEee--------------cCCC
Confidence 688899888766544445778999999999999999873 45677765321111 1111 1123
Q ss_pred CeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeecCCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEE
Q 000731 175 FKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVF 254 (1325)
Q Consensus 175 ~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~~~v~~lawsPdG~~IAs~~~d~~~~~~~~V~~ 254 (1325)
.+...+|||||+.|+.+.+. .+...|.+||..+|++... ..+.+.....+|+|||+.||.+++... ...|.+
T Consensus 247 ~~~~~~~SPDG~~la~~~~~----~g~~~Iy~~d~~~~~~~~L-t~~~~~~~~~~~spDG~~i~f~s~~~g---~~~Iy~ 318 (435)
T PRK05137 247 MTFAPRFSPDGRKVVMSLSQ----GGNTDIYTMDLRSGTTTRL-TDSPAIDTSPSYSPDGSQIVFESDRSG---SPQLYV 318 (435)
T ss_pred cccCcEECCCCCEEEEEEec----CCCceEEEEECCCCceEEc-cCCCCccCceeEcCCCCEEEEEECCCC---CCeEEE
Confidence 44678999999988733332 2345788889977766543 335556678999999999998875422 356878
Q ss_pred EeCCCceEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeEEEeEEEEecCCcEEEEEccCCCc
Q 000731 255 YERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPL 333 (1325)
Q Consensus 255 ~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~n~~wylkqel~~~~~~~~~v~Wsp~~~~ 333 (1325)
++.+|.....++. +...+...+|||||+.||....+.+...|.+|+..+... ..+.. ........|+|++..
T Consensus 319 ~d~~g~~~~~lt~---~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~---~~lt~-~~~~~~p~~spDG~~ 390 (435)
T PRK05137 319 MNADGSNPRRISF---GGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE---RILTS-GFLVEGPTWAPNGRV 390 (435)
T ss_pred EECCCCCeEEeec---CCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce---EeccC-CCCCCCCeECCCCCE
Confidence 8877644332221 133466789999999999987654334688888754321 11211 111245789998865
No 161
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.48 E-value=2.6e-12 Score=156.46 Aligned_cols=221 Identities=13% Similarity=0.126 Sum_probs=145.9
Q ss_pred ceeEEeeecCCCEEEEEeC---CCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEE-ECCC
Q 000731 22 ILQFSALDIEQNRLFFASS---ANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVG-TSSG 97 (1325)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~---~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~V~~v~~spdg~~La~a-s~dG 97 (1325)
.+...+|.+|+..|++++. ...|+.|++ .+++. +. +..+ .+.+.++.|||||+.|+.. +.+|
T Consensus 200 ~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl--~~G~~--~~------l~~~----~~~~~~~~~SPDG~~La~~~~~~g 265 (429)
T PRK03629 200 PLMSPAWSPDGSKLAYVTFESGRSALVIQTL--ANGAV--RQ------VASF----PRHNGAPAFSPDGSKLAFALSKTG 265 (429)
T ss_pred ceeeeEEcCCCCEEEEEEecCCCcEEEEEEC--CCCCe--EE------ccCC----CCCcCCeEECCCCCEEEEEEcCCC
Confidence 6778999999999988753 447999998 44432 11 1111 1234568999999999876 4455
Q ss_pred --cEEEEeCCCCeEEEeceecCcEEEEEEcCCCCeEEEEeCC-ccEEEEeecCceeeeeeccccCCCceeccCccccCCC
Q 000731 98 --LLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGF-GQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFS 174 (1325)
Q Consensus 98 --~I~lw~~~~~~~e~vg~~~~~I~~~awSPDG~~LA~~s~d-gtV~l~s~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~ 174 (1325)
+|.+||++++.+..+......+...+|||||+.|+.++.+ +...+|..+-+.-....+.. ...
T Consensus 266 ~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~--------------~~~ 331 (429)
T PRK03629 266 SLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITW--------------EGS 331 (429)
T ss_pred CcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeec--------------CCC
Confidence 4888999988776444335567899999999999998864 44445432211100011110 011
Q ss_pred CeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeecCCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEE
Q 000731 175 FKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVF 254 (1325)
Q Consensus 175 ~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~~~v~~lawsPdG~~IAs~~~d~~~~~~~~V~~ 254 (1325)
.....+|+|||+++|+++.. .+...|.+||.++|+....... ....+.+|+|||+.|+.++.+.. ...+.+
T Consensus 332 ~~~~~~~SpDG~~Ia~~~~~----~g~~~I~~~dl~~g~~~~Lt~~--~~~~~p~~SpDG~~i~~~s~~~~---~~~l~~ 402 (429)
T PRK03629 332 QNQDADVSSDGKFMVMVSSN----GGQQHIAKQDLATGGVQVLTDT--FLDETPSIAPNGTMVIYSSSQGM---GSVLNL 402 (429)
T ss_pred CccCEEECCCCCEEEEEEcc----CCCceEEEEECCCCCeEEeCCC--CCCCCceECCCCCEEEEEEcCCC---ceEEEE
Confidence 23568999999999844432 2346799999978876544432 23457899999999999887643 345777
Q ss_pred EeCCCceEEEEEeccCCCCcEEEEEEcc
Q 000731 255 YERNGLERSSFDINEQIDSTVELLKWNC 282 (1325)
Q Consensus 255 ~e~nGl~~~~f~l~~~~~~~V~~laWSp 282 (1325)
++.+|.... .++. +++.+...+|||
T Consensus 403 ~~~~G~~~~--~l~~-~~~~~~~p~Wsp 427 (429)
T PRK03629 403 VSTDGRFKA--RLPA-TDGQVKFPAWSP 427 (429)
T ss_pred EECCCCCeE--ECcc-CCCCcCCcccCC
Confidence 888876544 2433 245688999998
No 162
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.48 E-value=1.4e-12 Score=148.66 Aligned_cols=247 Identities=14% Similarity=0.125 Sum_probs=166.3
Q ss_pred ceeEEeeecCCC-EEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEE
Q 000731 22 ILQFSALDIEQN-RLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLL 100 (1325)
Q Consensus 22 ~~~~~~~d~~~~-~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~V~~v~~spdg~~La~as~dG~I~ 100 (1325)
.+...+|-+.+. .+++++-....|.||+ .+.+. .++. .+.++. ...+..+..|||+++|++++..|-|.
T Consensus 259 Pi~~a~f~p~G~~~i~~s~rrky~ysyDl--e~ak~-~k~~-~~~g~e------~~~~e~FeVShd~~fia~~G~~G~I~ 328 (514)
T KOG2055|consen 259 PIQKAEFAPNGHSVIFTSGRRKYLYSYDL--ETAKV-TKLK-PPYGVE------EKSMERFEVSHDSNFIAIAGNNGHIH 328 (514)
T ss_pred ccceeeecCCCceEEEecccceEEEEeec--ccccc-cccc-CCCCcc------cchhheeEecCCCCeEEEcccCceEE
Confidence 566777888888 5555555778999999 55553 1221 122211 23577888999999999999999999
Q ss_pred EEeCCCCeEEEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeeeccccCCCceeccCccccCCCCeEEEE
Q 000731 101 LHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPIS 180 (1325)
Q Consensus 101 lw~~~~~~~e~vg~~~~~I~~~awSPDG~~LA~~s~dgtV~l~s~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~is 180 (1325)
|....|+++-..=.+.+.|..+.||.||+.|.+.+++|.|.+|+-.-. .+++...+.+.| .-.+++
T Consensus 329 lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~----~~~~rf~D~G~v----------~gts~~ 394 (514)
T KOG2055|consen 329 LLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQN----SCLHRFVDDGSV----------HGTSLC 394 (514)
T ss_pred eehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEEecCCc----ceEEEEeecCcc----------ceeeee
Confidence 998877654321234677999999999999999999999999863211 222211111111 126788
Q ss_pred EecCCcEEEEeeccccccCCCCEEEEEECCCC------ceeeeecCCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEE
Q 000731 181 WRGDGKYFATLSEFCNSSKLHKRLKVWERDSG------TLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVF 254 (1325)
Q Consensus 181 WspDG~~lAtvss~d~~~~~d~~irVWd~~~G------~l~~t~e~~~~~v~~lawsPdG~~IAs~~~d~~~~~~~~V~~ 254 (1325)
-|++|+||| ++|- .|.|-|||.++. +.+.+.......|.+++|+||++++|-+|+.. +..+++
T Consensus 395 ~S~ng~ylA-~GS~------~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~----knalrL 463 (514)
T KOG2055|consen 395 ISLNGSYLA-TGSD------SGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVK----KNALRL 463 (514)
T ss_pred ecCCCceEE-eccC------cceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhcc----ccceEE
Confidence 899999999 7753 489999997332 12222223344579999999999999988753 455665
Q ss_pred EeCCCc-eEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeC
Q 000731 255 YERNGL-ERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSN 306 (1325)
Q Consensus 255 ~e~nGl-~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~n 306 (1325)
-..-.. .-..|..+...-+.|.+++|||.|-+||+|..++ .|.||.+..
T Consensus 464 VHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~g---rv~l~kL~h 513 (514)
T KOG2055|consen 464 VHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAG---RVHLFKLHH 513 (514)
T ss_pred EeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCC---ceeeEeecc
Confidence 431100 0011111111125699999999999999999988 899998754
No 163
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.48 E-value=3.8e-12 Score=139.52 Aligned_cols=227 Identities=16% Similarity=0.174 Sum_probs=160.3
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCC--EEEEEECCCcE
Q 000731 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKE--ALIVGTSSGLL 99 (1325)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~V~~v~~spdg~--~La~as~dG~I 99 (1325)
.+.++|. ++-.+.++|.|-.|..||. ..+.. ..+ |. .+.+.|+++.|.|... .|.+|++||.|
T Consensus 45 sitavAV--s~~~~aSGssDetI~IYDm--~k~~q-lg~------ll----~HagsitaL~F~~~~S~shLlS~sdDG~i 109 (362)
T KOG0294|consen 45 SITALAV--SGPYVASGSSDETIHIYDM--RKRKQ-LGI------LL----SHAGSITALKFYPPLSKSHLLSGSDDGHI 109 (362)
T ss_pred ceeEEEe--cceeEeccCCCCcEEEEec--cchhh-hcc------ee----ccccceEEEEecCCcchhheeeecCCCcE
Confidence 4555554 3455666677878999998 22221 111 22 2257999999999876 89999999999
Q ss_pred EEEeCCCCe-EEEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeee-----eccccCCCceeccCccccCC
Q 000731 100 LLHSVDGNA-TEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYEN-----PLEELAEGFDVHEPELSSSF 173 (1325)
Q Consensus 100 ~lw~~~~~~-~e~vg~~~~~I~~~awSPDG~~LA~~s~dgtV~l~s~~~d~~~e~-----~l~~~~~~~~Vs~tqf~~~~ 173 (1325)
.+|+...-. +...-.|.+.|+.++..|.|++-.++++|+.+.+| +.+.+. .+..
T Consensus 110 ~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~W----NLV~Gr~a~v~~L~~---------------- 169 (362)
T KOG0294|consen 110 IIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTW----NLVRGRVAFVLNLKN---------------- 169 (362)
T ss_pred EEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeee----hhhcCccceeeccCC----------------
Confidence 999986532 23444578889999999999999999999999765 444332 2222
Q ss_pred CCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeecCCCCceeEEEEccCCCeEEEEecCCCCCCCCeEE
Q 000731 174 SFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIV 253 (1325)
Q Consensus 174 ~~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~~~v~~lawsPdG~~IAs~~~d~~~~~~~~V~ 253 (1325)
....|.|+|.|.+|+ ++. .+.|-||..++..+....+.. ..+.++-|- +++.+++|.++ ..|.
T Consensus 170 -~at~v~w~~~Gd~F~-v~~-------~~~i~i~q~d~A~v~~~i~~~-~r~l~~~~l-~~~~L~vG~d~------~~i~ 232 (362)
T KOG0294|consen 170 -KATLVSWSPQGDHFV-VSG-------RNKIDIYQLDNASVFREIENP-KRILCATFL-DGSELLVGGDN------EWIS 232 (362)
T ss_pred -cceeeEEcCCCCEEE-EEe-------ccEEEEEecccHhHhhhhhcc-ccceeeeec-CCceEEEecCC------ceEE
Confidence 125599999999998 653 478999999666655544422 223444443 55667777775 4699
Q ss_pred EEeCCC-ceEEEEEeccCCCCcEEEEEE--ccCCCeeEEEEccCCCCeEEEEEeeC
Q 000731 254 FYERNG-LERSSFDINEQIDSTVELLKW--NCMSDLLAAVVRFEEYDSVKICFFSN 306 (1325)
Q Consensus 254 ~~e~nG-l~~~~f~l~~~~~~~V~~laW--SpDg~~LAs~~~d~~~~~VqLW~~~n 306 (1325)
+||.+. .-..+|. .++..|.++.+ +|++.+|+++++|| .|++|++.-
T Consensus 233 ~~D~ds~~~~~~~~---AH~~RVK~i~~~~~~~~~~lvTaSSDG---~I~vWd~~~ 282 (362)
T KOG0294|consen 233 LKDTDSDTPLTEFL---AHENRVKDIASYTNPEHEYLVTASSDG---FIKVWDIDM 282 (362)
T ss_pred EeccCCCccceeee---cchhheeeeEEEecCCceEEEEeccCc---eEEEEEccc
Confidence 999873 3333332 24678988884 79999999999999 999999863
No 164
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.48 E-value=1.4e-12 Score=149.14 Aligned_cols=276 Identities=14% Similarity=0.133 Sum_probs=190.5
Q ss_pred CCCEEEEEEccCCCEEEEEECCCcEEEEeCCCC-------eEEEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecC
Q 000731 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDGN-------ATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDW 147 (1325)
Q Consensus 75 ~~~V~~v~~spdg~~La~as~dG~I~lw~~~~~-------~~e~vg~~~~~I~~~awSPDG~~LA~~s~dgtV~l~s~~~ 147 (1325)
+.-|.++.+|-..+.+.+|+ .|.|++||+... ++.+... +..|++...+|||+.|.+|+.-.+|.||+
T Consensus 419 GEvVcAvtIS~~trhVyTgG-kgcVKVWdis~pg~k~PvsqLdcl~r-dnyiRSckL~pdgrtLivGGeastlsiWD--- 493 (705)
T KOG0639|consen 419 GEVVCAVTISNPTRHVYTGG-KGCVKVWDISQPGNKSPVSQLDCLNR-DNYIRSCKLLPDGRTLIVGGEASTLSIWD--- 493 (705)
T ss_pred CcEEEEEEecCCcceeEecC-CCeEEEeeccCCCCCCccccccccCc-ccceeeeEecCCCceEEeccccceeeeee---
Confidence 44567789999999988876 688999998641 2345544 67899999999999999999999998864
Q ss_pred ceeeeee-ccccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeecCCCCcee
Q 000731 148 DLLYENP-LEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGA 226 (1325)
Q Consensus 148 d~~~e~~-l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~~~v~ 226 (1325)
..+... +...... .......++-|||.+..-++- .|+.|+|||..+-.+...+.+|.....
T Consensus 494 -LAapTprikaelts----------sapaCyALa~spDakvcFscc-------sdGnI~vwDLhnq~~VrqfqGhtDGas 555 (705)
T KOG0639|consen 494 -LAAPTPRIKAELTS----------SAPACYALAISPDAKVCFSCC-------SDGNIAVWDLHNQTLVRQFQGHTDGAS 555 (705)
T ss_pred -ccCCCcchhhhcCC----------cchhhhhhhcCCccceeeeec-------cCCcEEEEEcccceeeecccCCCCCce
Confidence 332221 1110000 001235688899998543132 258999999988889999999999999
Q ss_pred EEEEccCCCeEEEEecCCCCCCCCeEEEEe-CCCceEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEee
Q 000731 227 VLEWMPSGANIAAVYDRKSENKCPSIVFYE-RNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFS 305 (1325)
Q Consensus 227 ~lawsPdG~~IAs~~~d~~~~~~~~V~~~e-~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~ 305 (1325)
+|..|+||..|=+|+-| ++|+-|| |.|....+..+ ...|.+|..+|.++.||+|-.++ .|.+-.++
T Consensus 556 cIdis~dGtklWTGGlD------ntvRcWDlregrqlqqhdF----~SQIfSLg~cP~~dWlavGMens---~vevlh~s 622 (705)
T KOG0639|consen 556 CIDISKDGTKLWTGGLD------NTVRCWDLREGRQLQQHDF----SSQIFSLGYCPTGDWLAVGMENS---NVEVLHTS 622 (705)
T ss_pred eEEecCCCceeecCCCc------cceeehhhhhhhhhhhhhh----hhhheecccCCCccceeeecccC---cEEEEecC
Confidence 99999999999999986 5799999 34432222111 35699999999999999999988 67777776
Q ss_pred CCeeEEEeEEEEecCCcEEEEEccCCCcEEEEEecCCcEEEEEEEEeeeeCCCeeEEEEeCCEEEEeecCCcCCCCCcee
Q 000731 306 NNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYL 385 (1325)
Q Consensus 306 n~~wylkqel~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDG~~l~lt~l~~~~vPpPm~~ 385 (1325)
..+-| .+..+..-..++.|.+-+.. .+.++ -++-+ ..|.+|-..+.
T Consensus 623 kp~ky---qlhlheScVLSlKFa~cGkw--fvStG------------------------kDnlL-----nawrtPyGasi 668 (705)
T KOG0639|consen 623 KPEKY---QLHLHESCVLSLKFAYCGKW--FVSTG------------------------KDNLL-----NAWRTPYGASI 668 (705)
T ss_pred Cccce---eecccccEEEEEEecccCce--eeecC------------------------chhhh-----hhccCccccce
Confidence 54432 23222111266777765432 11110 11111 12233444455
Q ss_pred eeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeC
Q 000731 386 FSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDL 422 (1325)
Q Consensus 386 ~~l~~~~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~~ 422 (1325)
++..-.++|.+...|.|. +++++++.|....+|.+
T Consensus 669 FqskE~SsVlsCDIS~dd--kyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 669 FQSKESSSVLSCDISFDD--KYIVTGSGDKKATVYEV 703 (705)
T ss_pred eeccccCcceeeeeccCc--eEEEecCCCcceEEEEE
Confidence 556667889998999998 89999999988888864
No 165
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.48 E-value=7.6e-11 Score=138.69 Aligned_cols=273 Identities=14% Similarity=0.087 Sum_probs=164.3
Q ss_pred CEEEEEe-CCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEE-CCCcEEEEeCC-CCeE
Q 000731 33 NRLFFAS-SANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGT-SSGLLLLHSVD-GNAT 109 (1325)
Q Consensus 33 ~~l~~~s-~~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~V~~v~~spdg~~La~as-~dG~I~lw~~~-~~~~ 109 (1325)
..+|+++ .+++|..|++. .+++. ..+.+ .+ .++.+..++++||++.|.+++ .++.|..|+.+ ++.+
T Consensus 2 ~~~y~~~~~~~~I~~~~~~-~~g~l-~~~~~-------~~--~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l 70 (330)
T PRK11028 2 QIVYIASPESQQIHVWNLN-HEGAL-TLLQV-------VD--VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGAL 70 (330)
T ss_pred eEEEEEcCCCCCEEEEEEC-CCCce-eeeeE-------Ee--cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCce
Confidence 3578874 47889999993 12221 01121 11 134677899999999987764 58889999986 3445
Q ss_pred EEece--ecCcEEEEEEcCCCCeEEEEe-CCccEEEEeecCceeeeeeccccCCCceeccCccccCCCCeEEEEEecCCc
Q 000731 110 EVVGR--VEGGVRFISPSPDGDLLGVTT-GFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGK 186 (1325)
Q Consensus 110 e~vg~--~~~~I~~~awSPDG~~LA~~s-~dgtV~l~s~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~ 186 (1325)
..++. ..+....++|+|||+.|.+++ .++.|.+|+.+-+.......... .+......++++|||+
T Consensus 71 ~~~~~~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~------------~~~~~~~~~~~~p~g~ 138 (330)
T PRK11028 71 TFAAESPLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQII------------EGLEGCHSANIDPDNR 138 (330)
T ss_pred EEeeeecCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeec------------cCCCcccEeEeCCCCC
Confidence 43332 234567899999999998887 47788887542111000011000 0011236788999999
Q ss_pred EEEEeeccccccCCCCEEEEEECCC-Cceee------eecCCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeCC-
Q 000731 187 YFATLSEFCNSSKLHKRLKVWERDS-GTLQA------SSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERN- 258 (1325)
Q Consensus 187 ~lAtvss~d~~~~~d~~irVWd~~~-G~l~~------t~e~~~~~v~~lawsPdG~~IAs~~~d~~~~~~~~V~~~e~n- 258 (1325)
++. ++. .++++|.|||.++ |.+.. ..... .....++|+|||++++++... .++|.+|+.+
T Consensus 139 ~l~-v~~-----~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g-~~p~~~~~~pdg~~lyv~~~~-----~~~v~v~~~~~ 206 (330)
T PRK11028 139 TLW-VPC-----LKEDRIRLFTLSDDGHLVAQEPAEVTTVEG-AGPRHMVFHPNQQYAYCVNEL-----NSSVDVWQLKD 206 (330)
T ss_pred EEE-Eee-----CCCCEEEEEEECCCCcccccCCCceecCCC-CCCceEEECCCCCEEEEEecC-----CCEEEEEEEeC
Confidence 887 443 2458999999855 44421 11112 223679999999999888653 4689999864
Q ss_pred --CceEEEEEec-cC----CCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeC--CeeEEEeEEEEecCCcEEEEEcc
Q 000731 259 --GLERSSFDIN-EQ----IDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSN--NHWYLKYEIRYLRRDGIRFMWHP 329 (1325)
Q Consensus 259 --Gl~~~~f~l~-~~----~~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~n--~~wylkqel~~~~~~~~~v~Wsp 329 (1325)
|...-.-.+. .+ +......+.++|||+.|.++... .++|.+|++.. ..+.+.+.+... ..+..+.|+|
T Consensus 207 ~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~--~~~I~v~~i~~~~~~~~~~~~~~~~-~~p~~~~~~~ 283 (330)
T PRK11028 207 PHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRT--ASLISVFSVSEDGSVLSFEGHQPTE-TQPRGFNIDH 283 (330)
T ss_pred CCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCC--CCeEEEEEEeCCCCeEEEeEEEecc-ccCCceEECC
Confidence 3221111111 11 12234579999999999997542 23899999853 233233333221 2235688999
Q ss_pred CCCcEEEEEec-CCcE
Q 000731 330 TKPLQLICWTL-DGQI 344 (1325)
Q Consensus 330 ~~~~~L~~~~~-~g~~ 344 (1325)
++.. |.+... +|.+
T Consensus 284 dg~~-l~va~~~~~~v 298 (330)
T PRK11028 284 SGKY-LIAAGQKSHHI 298 (330)
T ss_pred CCCE-EEEEEccCCcE
Confidence 8765 555443 4444
No 166
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.47 E-value=1.5e-09 Score=130.56 Aligned_cols=70 Identities=20% Similarity=0.177 Sum_probs=62.3
Q ss_pred CEEEEEEccCCCEEEEEECCCcEEEEeCCCCeEE-EeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeec
Q 000731 77 SITAFDYLMEKEALIVGTSSGLLLLHSVDGNATE-VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHD 146 (1325)
Q Consensus 77 ~V~~v~~spdg~~La~as~dG~I~lw~~~~~~~e-~vg~~~~~I~~~awSPDG~~LA~~s~dgtV~l~s~~ 146 (1325)
.++++.|+|+--.|+.|..-|.+.+|+.++.+.. .+..|...|..+.|||||..|.++..-|.|.+|.-+
T Consensus 61 hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 61 HATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred ehhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 6788999999999999999999999999886654 555678899999999999999999999999999643
No 167
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.46 E-value=1.2e-13 Score=163.99 Aligned_cols=227 Identities=11% Similarity=0.134 Sum_probs=167.9
Q ss_pred eEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEEEe
Q 000731 24 QFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHS 103 (1325)
Q Consensus 24 ~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~V~~v~~spdg~~La~as~dG~I~lw~ 103 (1325)
.+.-+..-+..+.++.++..+-+|..+ +. +.+.. +.+| ...|-++.|+++...|+.|+++|+|++||
T Consensus 32 ~~lk~~~s~r~~~~Gg~~~k~~L~~i~---kp--~~i~S----~~~h----espIeSl~f~~~E~LlaagsasgtiK~wD 98 (825)
T KOG0267|consen 32 GCLKIRKSSRSLVTGGEDEKVNLWAIG---KP--NAITS----LTGH----ESPIESLTFDTSERLLAAGSASGTIKVWD 98 (825)
T ss_pred ceeeeeccceeeccCCCceeecccccc---CC--chhhe----eecc----CCcceeeecCcchhhhcccccCCceeeee
Confidence 334444444556666667656667662 11 11111 3444 35799999999999999999999999999
Q ss_pred CCCCeE-EEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeeeccccCCCceeccCccccCCCCeEEEEEe
Q 000731 104 VDGNAT-EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWR 182 (1325)
Q Consensus 104 ~~~~~~-e~vg~~~~~I~~~awSPDG~~LA~~s~dgtV~l~s~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWs 182 (1325)
+...++ ..+-.|-..+..+.|+|=|++.|.++.|..+++|+.-. .-+.+. |.+|...+..+.|+
T Consensus 99 leeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk----~Gc~~~-----------~~s~~~vv~~l~ls 163 (825)
T KOG0267|consen 99 LEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRK----KGCSHT-----------YKSHTRVVDVLRLS 163 (825)
T ss_pred hhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhc----cCceee-----------ecCCcceeEEEeec
Confidence 987653 33333577889999999999999999999998875221 111121 22445567889999
Q ss_pred cCCcEEEEeeccccccCCCCEEEEEECCCCceeeeecCCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeCCCceE
Q 000731 183 GDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLER 262 (1325)
Q Consensus 183 pDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~~~v~~lawsPdG~~IAs~~~d~~~~~~~~V~~~e~nGl~~ 262 (1325)
|||++++ ++ +.|.+++|||...|++...++.|.+.+.++.|.|.--++|+|+.| .+|+||+.. .
T Consensus 164 P~Gr~v~-~g------~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d------~tv~f~dle---t 227 (825)
T KOG0267|consen 164 PDGRWVA-SG------GEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSD------RTVRFWDLE---T 227 (825)
T ss_pred CCCceee-cc------CCcceeeeecccccccccccccccccccccccCchhhhhccCCCC------ceeeeeccc---e
Confidence 9999999 65 346999999998999999999999999999999999999999986 569999842 1
Q ss_pred EEEEec-cCCCCcEEEEEEccCCCeeEEEEccC
Q 000731 263 SSFDIN-EQIDSTVELLKWNCMSDLLAAVVRFE 294 (1325)
Q Consensus 263 ~~f~l~-~~~~~~V~~laWSpDg~~LAs~~~d~ 294 (1325)
-+..-. .+....|.+++|+|||..+++|....
T Consensus 228 fe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 228 FEVISSGKPETDGVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred eEEeeccCCccCCceeeeecCCceeeecCchhh
Confidence 111111 23346799999999999999987664
No 168
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.46 E-value=4.7e-13 Score=148.55 Aligned_cols=233 Identities=12% Similarity=0.082 Sum_probs=163.5
Q ss_pred ceeEEeeecCC-CEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEE
Q 000731 22 ILQFSALDIEQ-NRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLL 100 (1325)
Q Consensus 22 ~~~~~~~d~~~-~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~V~~v~~spdg~~La~as~dG~I~ 100 (1325)
.+.++|-++.+ ..++++|-|+++..||+ .+.+..+. +..| .+.|.+|.+.- ..+.+++.|.+|+
T Consensus 68 GV~~lakhp~~ls~~aSGs~DG~VkiWnl--sqR~~~~~-------f~AH----~G~V~Gi~v~~--~~~~tvgdDKtvK 132 (433)
T KOG0268|consen 68 GVSCLAKHPNKLSTVASGSCDGEVKIWNL--SQRECIRT-------FKAH----EGLVRGICVTQ--TSFFTVGDDKTVK 132 (433)
T ss_pred ccchhhcCcchhhhhhccccCceEEEEeh--hhhhhhhe-------eecc----cCceeeEEecc--cceEEecCCccee
Confidence 68888999988 88899999999999999 45543222 2222 35688887776 6677888888888
Q ss_pred EEeCCCC----------------------------eEEE-------------eceecCcEEEEEEcCCCC-eEEEEeCCc
Q 000731 101 LHSVDGN----------------------------ATEV-------------VGRVEGGVRFISPSPDGD-LLGVTTGFG 138 (1325)
Q Consensus 101 lw~~~~~----------------------------~~e~-------------vg~~~~~I~~~awSPDG~-~LA~~s~dg 138 (1325)
.|..++. .+++ .| .+.|.++.|+|-.+ +||+++.|+
T Consensus 133 ~wk~~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG--~Dti~svkfNpvETsILas~~sDr 210 (433)
T KOG0268|consen 133 QWKIDGPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWG--ADSISSVKFNPVETSILASCASDR 210 (433)
T ss_pred eeeccCCcceeeeccccccccccccccccccccCceeeecccccCCccceeecC--CCceeEEecCCCcchheeeeccCC
Confidence 8873210 1111 11 24578888888764 567777999
Q ss_pred cEEEEe-ecCceeeeeeccccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCC-Cceee
Q 000731 139 QILVMT-HDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDS-GTLQA 216 (1325)
Q Consensus 139 tV~l~s-~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~-G~l~~ 216 (1325)
.|.+++ |...|+..+.+.- .-..|+|+|.+--|. ++ .+|..+..+|... -..+.
T Consensus 211 sIvLyD~R~~~Pl~KVi~~m-----------------RTN~IswnPeafnF~-~a------~ED~nlY~~DmR~l~~p~~ 266 (433)
T KOG0268|consen 211 SIVLYDLRQASPLKKVILTM-----------------RTNTICWNPEAFNFV-AA------NEDHNLYTYDMRNLSRPLN 266 (433)
T ss_pred ceEEEecccCCccceeeeec-----------------cccceecCcccccee-ec------cccccceehhhhhhcccch
Confidence 998875 4445554443332 337899999776666 55 3467888888632 12233
Q ss_pred eecCCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeCCCceEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCC
Q 000731 217 SSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEY 296 (1325)
Q Consensus 217 t~e~~~~~v~~lawsPdG~~IAs~~~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~ 296 (1325)
....|...|.+++|||-|+-++||+.|+ +|++|..|+-...+. ....--..|.++.||.|++++.+|+.|+
T Consensus 267 v~~dhvsAV~dVdfsptG~EfvsgsyDk------sIRIf~~~~~~SRdi-YhtkRMq~V~~Vk~S~Dskyi~SGSdd~-- 337 (433)
T KOG0268|consen 267 VHKDHVSAVMDVDFSPTGQEFVSGSYDK------SIRIFPVNHGHSRDI-YHTKRMQHVFCVKYSMDSKYIISGSDDG-- 337 (433)
T ss_pred hhcccceeEEEeccCCCcchhccccccc------eEEEeecCCCcchhh-hhHhhhheeeEEEEeccccEEEecCCCc--
Confidence 3455667789999999999999999975 599998775332221 0111124699999999999999999999
Q ss_pred CeEEEEEee
Q 000731 297 DSVKICFFS 305 (1325)
Q Consensus 297 ~~VqLW~~~ 305 (1325)
.|+||-.+
T Consensus 338 -nvRlWka~ 345 (433)
T KOG0268|consen 338 -NVRLWKAK 345 (433)
T ss_pred -ceeeeecc
Confidence 89999865
No 169
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.46 E-value=1.4e-11 Score=149.84 Aligned_cols=233 Identities=15% Similarity=0.128 Sum_probs=135.7
Q ss_pred CEEEEEEccCCCEEE---EEECCC--cEEEEeCCCCeEEEeceecCcEEEEEEcCCCCeEEEEeC-CccEEEEeecCcee
Q 000731 77 SITAFDYLMEKEALI---VGTSSG--LLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTG-FGQILVMTHDWDLL 150 (1325)
Q Consensus 77 ~V~~v~~spdg~~La---~as~dG--~I~lw~~~~~~~e~vg~~~~~I~~~awSPDG~~LA~~s~-dgtV~l~s~~~d~~ 150 (1325)
.+.+=.|||||+.++ +...+| .|.+.++++++...+....+.....+|||||+.||.++. +|.-.+|...|+.-
T Consensus 186 ~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~ 265 (428)
T PRK01029 186 LSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLE 265 (428)
T ss_pred CcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecc
Confidence 455678999998644 333444 577788988876655556677778999999999998864 34332332333321
Q ss_pred eeeeccccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECC-CCceeeeecCCCCceeEEE
Q 000731 151 YENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERD-SGTLQASSELKAFMGAVLE 229 (1325)
Q Consensus 151 ~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~-~G~l~~t~e~~~~~v~~la 229 (1325)
.... .....++. +........+|||||++||+++.. .+...|.+++.. .|..........+.+...+
T Consensus 266 ~g~~----g~~~~lt~----~~~~~~~~p~wSPDG~~Laf~s~~----~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~ 333 (428)
T PRK01029 266 TGAI----GKPRRLLN----EAFGTQGNPSFSPDGTRLVFVSNK----DGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPA 333 (428)
T ss_pred cCCC----CcceEeec----CCCCCcCCeEECCCCCEEEEEECC----CCCceEEEEECcccccceEEeccCCCCcccee
Confidence 1100 00001110 011223568999999999855432 122345555542 1221222222334457889
Q ss_pred EccCCCeEEEEecCCCCCCCCeEEEEeCCCceEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCee
Q 000731 230 WMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHW 309 (1325)
Q Consensus 230 wsPdG~~IAs~~~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~n~~w 309 (1325)
|||||+.||.++.+.+ ...|.+|+..+..... +.. ....+....|||||+.|+....+.+...|.+|++.+...
T Consensus 334 wSPDG~~Laf~~~~~g---~~~I~v~dl~~g~~~~--Lt~-~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~ 407 (428)
T PRK01029 334 WSPDGKKIAFCSVIKG---VRQICVYDLATGRDYQ--LTT-SPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKT 407 (428)
T ss_pred ECCCCCEEEEEEcCCC---CcEEEEEECCCCCeEE--ccC-CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence 9999999998876432 4578899976543332 221 123567899999999998776554344688888776542
Q ss_pred EEEeEEEEecCCcEEEEEccC
Q 000731 310 YLKYEIRYLRRDGIRFMWHPT 330 (1325)
Q Consensus 310 ylkqel~~~~~~~~~v~Wsp~ 330 (1325)
..+...........|+|-
T Consensus 408 ---~~Lt~~~g~~~~p~Ws~~ 425 (428)
T PRK01029 408 ---RKIVIGSGEKRFPSWGAF 425 (428)
T ss_pred ---EEeecCCCcccCceecCC
Confidence 122211112245677764
No 170
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.46 E-value=2.6e-12 Score=156.60 Aligned_cols=215 Identities=15% Similarity=0.135 Sum_probs=139.4
Q ss_pred ceeEEeeecCCCEEEEEeCC---CcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEE-CCC
Q 000731 22 ILQFSALDIEQNRLFFASSA---NNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGT-SSG 97 (1325)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~---~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~V~~v~~spdg~~La~as-~dG 97 (1325)
.+...+|.+|++.|++++.+ ..|+.||+ .+++.. .+.. +. +...+++|+|||+.|++++ .+|
T Consensus 205 ~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl--~tg~~~-~l~~----~~-------g~~~~~~wSPDG~~La~~~~~~g 270 (429)
T PRK01742 205 PLMSPAWSPDGSKLAYVSFENKKSQLVVHDL--RSGARK-VVAS----FR-------GHNGAPAFSPDGSRLAFASSKDG 270 (429)
T ss_pred ccccceEcCCCCEEEEEEecCCCcEEEEEeC--CCCceE-EEec----CC-------CccCceeECCCCCEEEEEEecCC
Confidence 57788999999999988653 36999998 454321 1111 11 2344689999999998875 688
Q ss_pred cEEEE--eCCCCeEEEeceecCcEEEEEEcCCCCeEEEEe-CCccEEEEeecCceeeeeeccccCCCceeccCccccCCC
Q 000731 98 LLLLH--SVDGNATEVVGRVEGGVRFISPSPDGDLLGVTT-GFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFS 174 (1325)
Q Consensus 98 ~I~lw--~~~~~~~e~vg~~~~~I~~~awSPDG~~LA~~s-~dgtV~l~s~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~ 174 (1325)
.+.|| |.+++.+..+..+...+.+.+|||||+.|+.++ .+|...+|..+-+.-....+ ++..
T Consensus 271 ~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l---------------~~~~ 335 (429)
T PRK01742 271 VLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV---------------GGRG 335 (429)
T ss_pred cEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe---------------cCCC
Confidence 76654 677766653333456688999999999988876 46777776432110000011 0111
Q ss_pred CeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeecCCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEE
Q 000731 175 FKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVF 254 (1325)
Q Consensus 175 ~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~~~v~~lawsPdG~~IAs~~~d~~~~~~~~V~~ 254 (1325)
...+|+|||++|+ ..+ .++ +.+||..+|+......+. ...+++|+|||++|++++.+.+ ...+.+
T Consensus 336 --~~~~~SpDG~~ia-~~~------~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~---~~~l~~ 400 (429)
T PRK01742 336 --YSAQISADGKTLV-MIN------GDN-VVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGL---GKVLQL 400 (429)
T ss_pred --CCccCCCCCCEEE-EEc------CCC-EEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCC---ceEEEE
Confidence 3578999999998 442 124 455898788765443332 2367899999999999987532 223444
Q ss_pred EeCCCceEEEEEeccCCCCcEEEEEEccC
Q 000731 255 YERNGLERSSFDINEQIDSTVELLKWNCM 283 (1325)
Q Consensus 255 ~e~nGl~~~~f~l~~~~~~~V~~laWSpD 283 (1325)
++.+|..... ++.+ ++.+...+|||-
T Consensus 401 ~~~~G~~~~~--l~~~-~g~~~~p~wsp~ 426 (429)
T PRK01742 401 VSADGRFKAR--LPGS-DGQVKFPAWSPY 426 (429)
T ss_pred EECCCCceEE--ccCC-CCCCCCcccCCC
Confidence 5677755443 3322 456889999983
No 171
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.45 E-value=8.1e-12 Score=145.97 Aligned_cols=280 Identities=20% Similarity=0.215 Sum_probs=184.7
Q ss_pred CccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeecCCCCceeEEEEccCCCe--EEEEecCC
Q 000731 167 PELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGAN--IAAVYDRK 244 (1325)
Q Consensus 167 tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~~~v~~lawsPdG~~--IAs~~~d~ 244 (1325)
.-|++|.+.+.+|+-.|-|.+|| +|+ .+|+||||...||.++.+.. .++.|.+|+|+|.+++ ||++-...
T Consensus 394 lvyrGHtg~Vr~iSvdp~G~wla-sGs------dDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~ 465 (733)
T KOG0650|consen 394 LVYRGHTGLVRSISVDPSGEWLA-SGS------DDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGEC 465 (733)
T ss_pred eeEeccCCeEEEEEecCCcceee-ecC------CCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEecCc
Confidence 34669999999999999999999 664 46999999999999999876 6778999999999874 55442211
Q ss_pred ----------------C----------CCCCCeEEEEeCCCceEEE--EEeccCCCCcEEEEEEccCCCeeEEEEccCCC
Q 000731 245 ----------------S----------ENKCPSIVFYERNGLERSS--FDINEQIDSTVELLKWNCMSDLLAAVVRFEEY 296 (1325)
Q Consensus 245 ----------------~----------~~~~~~V~~~e~nGl~~~~--f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~ 296 (1325)
+ ......|+.|.+..+..++ ..+...+...|.+|.|.-+|++||+...++..
T Consensus 466 ~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~ 545 (733)
T KOG0650|consen 466 VLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGN 545 (733)
T ss_pred eEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCc
Confidence 0 1123456677654221111 12222344679999999999999999987755
Q ss_pred CeEEEEEeeCCeeEEEeEEEEecC--CcEEEEEccCCCcEEEEEecCCcEEEEEEE---------------Eeee--eCC
Q 000731 297 DSVKICFFSNNHWYLKYEIRYLRR--DGIRFMWHPTKPLQLICWTLDGQITTYNFI---------------WTTA--VME 357 (1325)
Q Consensus 297 ~~VqLW~~~n~~wylkqel~~~~~--~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~---------------~~~~--~~d 357 (1325)
..|-|.+++... .| ..|... .+..+.|||..+. |.+.++ ..+.+|++. -+.+ +.+
T Consensus 546 ~~VliHQLSK~~---sQ-~PF~kskG~vq~v~FHPs~p~-lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msihp~G 619 (733)
T KOG0650|consen 546 KSVLIHQLSKRK---SQ-SPFRKSKGLVQRVKFHPSKPY-LFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIHPNG 619 (733)
T ss_pred ceEEEEeccccc---cc-CchhhcCCceeEEEecCCCce-EEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeecCCC
Confidence 578787776421 12 334222 2378999999986 667675 456666553 1222 433
Q ss_pred CeeEEEEeCCEEEEeecCCcCCCCCceeeeec-CCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCC-C--------c
Q 000731 358 NSTALVIDGSKILVTPLSLSLMPPPMYLFSLK-FPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAP-D--------M 427 (1325)
Q Consensus 358 ~~~v~viDG~~l~lt~l~~~~vPpPm~~~~l~-~~~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~~~~~-~--------~ 427 (1325)
..+++..-.+++.+.++....-| .+++. |...|.+|+|++.- .++|+++.||++.++--.-- + .
T Consensus 620 Dnli~gs~d~k~~WfDldlsskP----yk~lr~H~~avr~Va~H~ry--PLfas~sdDgtv~Vfhg~VY~Dl~qnpliVP 693 (733)
T KOG0650|consen 620 DNLILGSYDKKMCWFDLDLSSKP----YKTLRLHEKAVRSVAFHKRY--PLFASGSDDGTVIVFHGMVYNDLLQNPLIVP 693 (733)
T ss_pred CeEEEecCCCeeEEEEcccCcch----hHHhhhhhhhhhhhhhcccc--ceeeeecCCCcEEEEeeeeehhhhcCCceEe
Confidence 44555555566767777665432 23443 67889999999998 89999999999999864210 0 1
Q ss_pred cccccCCceeEeeeccccccCcEEEEEEecCCeEEEEEecCCCCceEEE
Q 000731 428 LEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFR 476 (1325)
Q Consensus 428 ~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~~~~~~~~~ 476 (1325)
+..+.||.. .....|.+..|.|..-.|.+++.+ +++.+|
T Consensus 694 lK~L~gH~~--------~~~~gVLd~~wHP~qpWLfsAGAd--~tirlf 732 (733)
T KOG0650|consen 694 LKRLRGHEK--------TNDLGVLDTIWHPRQPWLFSAGAD--GTIRLF 732 (733)
T ss_pred eeeccCcee--------ecccceEeecccCCCceEEecCCC--ceEEee
Confidence 111233211 112268888999988777766544 455544
No 172
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.45 E-value=4.7e-12 Score=144.89 Aligned_cols=297 Identities=15% Similarity=0.123 Sum_probs=188.3
Q ss_pred EEEEECCCcEEEEeCCCCeE-EEecee--cCcEEEEEEcCCCC-eEEEEeCCccEEEEeecCceeeeeeccccCCCceec
Q 000731 90 LIVGTSSGLLLLHSVDGNAT-EVVGRV--EGGVRFISPSPDGD-LLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVH 165 (1325)
Q Consensus 90 La~as~dG~I~lw~~~~~~~-e~vg~~--~~~I~~~awSPDG~-~LA~~s~dgtV~l~s~~~d~~~e~~l~~~~~~~~Vs 165 (1325)
|-+++...+++|||...... .++-++ +.||.++.|+..-. .+|+.++|..|.+|-+++. .-++++.....+
T Consensus 5 l~~aS~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~-~~~Vp~~~k~~g---- 79 (673)
T KOG4378|consen 5 LHVASTGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGK-TPEVPRVRKLTG---- 79 (673)
T ss_pred eeeeccCCceEEeecccccCccccccCCCCCcceeeeccccceEEEeecCCceeEEEecccCC-CCccceeecccc----
Confidence 44567777899999865322 122222 45799999998853 2334467888999987765 333433222200
Q ss_pred cCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeecCCCCceeEEEEccCCCeEEEEecCCC
Q 000731 166 EPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKS 245 (1325)
Q Consensus 166 ~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~~~v~~lawsPdG~~IAs~~~d~~ 245 (1325)
+...+++-.....|++ ++ +..+.|+|||...--++..+..|...|..+.++-.-.+||+++.
T Consensus 80 --------d~~~Cv~~~s~S~y~~-sg------G~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~--- 141 (673)
T KOG4378|consen 80 --------DNAFCVACASQSLYEI-SG------GQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSD--- 141 (673)
T ss_pred --------chHHHHhhhhcceeee-cc------CcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEecc---
Confidence 0112232222336777 44 33589999999544455567788899999999999999999987
Q ss_pred CCCCCeEEEEe-CCCceEEEEEeccCCCCcEEEEEEccCCCee-EEEEccCCCCeEEEEEeeCCeeEEEeEEEEecCCc-
Q 000731 246 ENKCPSIVFYE-RNGLERSSFDINEQIDSTVELLKWNCMSDLL-AAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDG- 322 (1325)
Q Consensus 246 ~~~~~~V~~~e-~nGl~~~~f~l~~~~~~~V~~laWSpDg~~L-As~~~d~~~~~VqLW~~~n~~wylkqel~~~~~~~- 322 (1325)
.++|.+.. ..+++..+|..+ ....|.-|.|||-.+.| .+++.+| +|.|||+.....|... ...| ..+
T Consensus 142 ---gGdiiih~~~t~~~tt~f~~~--sgqsvRll~ys~skr~lL~~asd~G---~VtlwDv~g~sp~~~~-~~~H-sAP~ 211 (673)
T KOG4378|consen 142 ---GGDIIIHGTKTKQKTTTFTID--SGQSVRLLRYSPSKRFLLSIASDKG---AVTLWDVQGMSPIFHA-SEAH-SAPC 211 (673)
T ss_pred ---CCcEEEEecccCccccceecC--CCCeEEEeecccccceeeEeeccCC---eEEEEeccCCCcccch-hhhc-cCCc
Confidence 36788776 456666666543 23468899999998865 5566666 9999999864322100 0011 223
Q ss_pred EEEEEccCCCcEEEEEecCCcEEEEEEEEeeeeCCCeeEEEEeCCEEEEeecCCcCCCCCceeeeecCCCCEEEEEEecC
Q 000731 323 IRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSK 402 (1325)
Q Consensus 323 ~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDG~~l~lt~l~~~~vPpPm~~~~l~~~~~V~~VaFSpd 402 (1325)
..++|+|.++..|+....|-.+..| +.+-. .+...|.-..+...|+|+++
T Consensus 212 ~gicfspsne~l~vsVG~Dkki~~y-------------------------D~~s~-----~s~~~l~y~~Plstvaf~~~ 261 (673)
T KOG4378|consen 212 RGICFSPSNEALLVSVGYDKKINIY-------------------------DIRSQ-----ASTDRLTYSHPLSTVAFSEC 261 (673)
T ss_pred CcceecCCccceEEEecccceEEEe-------------------------ecccc-----cccceeeecCCcceeeecCC
Confidence 5688999887655544444334332 22210 01112344567789999999
Q ss_pred CCCCEEEEEECCCcEEEEeCCCCCccccccCCceeEeeeccccccCcEEEEEEecCCeEE
Q 000731 403 SSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLL 462 (1325)
Q Consensus 403 g~~~~LAs~s~Dgti~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~ll 462 (1325)
| .+|+++++.|.|..||+-....+ ..+. -.+...|..++|-+..++|
T Consensus 262 G--~~L~aG~s~G~~i~YD~R~~k~P-------v~v~----sah~~sVt~vafq~s~tvl 308 (673)
T KOG4378|consen 262 G--TYLCAGNSKGELIAYDMRSTKAP-------VAVR----SAHDASVTRVAFQPSPTVL 308 (673)
T ss_pred c--eEEEeecCCceEEEEecccCCCC-------ceEe----eecccceeEEEeeecceee
Confidence 9 89999999999999998642111 1111 1234579999999987544
No 173
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.44 E-value=5.3e-12 Score=144.60 Aligned_cols=209 Identities=14% Similarity=0.054 Sum_probs=150.5
Q ss_pred CCCEEEEEEccCCCEEEEEECCCcEEEEeCCCCeE-EEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeee
Q 000731 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNAT-EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYEN 153 (1325)
Q Consensus 75 ~~~V~~v~~spdg~~La~as~dG~I~lw~~~~~~~-e~vg~~~~~I~~~awSPDG~~LA~~s~dgtV~l~s~~~d~~~e~ 153 (1325)
.+.|.+++-+|+|.+|+.|+..|.|.+|.+.+|.+ .+...|-..|+|+.||-||..+.++|.||-|.+|.-. +.+...
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~-~lv~a~ 159 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLT-DLVSAD 159 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEE-eecccc
Confidence 46899999999999999999999999999999875 4556678899999999999999999999999998532 111100
Q ss_pred eccccCCCceeccCccccCCCCeEEEEEecC--CcEEEEeeccccccCCCCEEEEEECCCCceeeeecCCCCceeEEEEc
Q 000731 154 PLEELAEGFDVHEPELSSSFSFKSPISWRGD--GKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWM 231 (1325)
Q Consensus 154 ~l~~~~~~~~Vs~tqf~~~~~~i~~isWspD--G~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~~~v~~laws 231 (1325)
. ....++ .-.|+.|.-.|+.+--.+- ..++. ++| .|+++|+||...|.++.+.. .+..+.+++..
T Consensus 160 ~---~~~~~p--~~~f~~HtlsITDl~ig~Gg~~~rl~-TaS------~D~t~k~wdlS~g~LLlti~-fp~si~av~lD 226 (476)
T KOG0646|consen 160 N---DHSVKP--LHIFSDHTLSITDLQIGSGGTNARLY-TAS------EDRTIKLWDLSLGVLLLTIT-FPSSIKAVALD 226 (476)
T ss_pred c---CCCccc--eeeeccCcceeEEEEecCCCccceEE-Eec------CCceEEEEEeccceeeEEEe-cCCcceeEEEc
Confidence 0 000011 1235566666666654433 34666 343 47999999998898887754 45567999999
Q ss_pred cCCCeEEEEecCCCCCCCCeEEEEeCCCce---E----EEEE--------eccCC-CCcEEEEEEccCCCeeEEEEccCC
Q 000731 232 PSGANIAAVYDRKSENKCPSIVFYERNGLE---R----SSFD--------INEQI-DSTVELLKWNCMSDLLAAVVRFEE 295 (1325)
Q Consensus 232 PdG~~IAs~~~d~~~~~~~~V~~~e~nGl~---~----~~f~--------l~~~~-~~~V~~laWSpDg~~LAs~~~d~~ 295 (1325)
|.+..+..|+.+ +.|-+...+++. . +.+. +.++. +..|.+|+.|-||++|++|+.|+
T Consensus 227 pae~~~yiGt~~------G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg- 299 (476)
T KOG0646|consen 227 PAERVVYIGTEE------GKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDG- 299 (476)
T ss_pred ccccEEEecCCc------ceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCC-
Confidence 999999998875 345443322221 1 1111 11221 23799999999999999999999
Q ss_pred CCeEEEEEeeC
Q 000731 296 YDSVKICFFSN 306 (1325)
Q Consensus 296 ~~~VqLW~~~n 306 (1325)
.|.+||...
T Consensus 300 --~VcvWdi~S 308 (476)
T KOG0646|consen 300 --KVCVWDIYS 308 (476)
T ss_pred --CEEEEecch
Confidence 899999875
No 174
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.43 E-value=1.3e-12 Score=153.75 Aligned_cols=157 Identities=18% Similarity=0.327 Sum_probs=144.9
Q ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHhcChHHHHhhc--CCcHHHHHHHHHHHHHHhccccHHHHHHHHHHcCCHHHHHH
Q 000731 947 FENALKHIVSMGDSYHADCLNLMKKYAQLFPLGLKLI--TDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSSLEKAMK 1024 (1325)
Q Consensus 947 ye~Al~~l~~~g~~~~d~ale~~~~~~~ly~~AL~L~--~d~~~~~~i~~~~a~~L~~~~~~~eAa~~y~~ag~~ekAl~ 1024 (1325)
|++|-..|-+..+ |++|++++++. .-|-+|++|. .-|++.-.+-++||+||+..++++.|..+|..|+...||++
T Consensus 664 ydkagdlfeki~d--~dkale~fkkg-daf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~~~kaie 740 (1636)
T KOG3616|consen 664 YDKAGDLFEKIHD--FDKALECFKKG-DAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKAIE 740 (1636)
T ss_pred HHhhhhHHHHhhC--HHHHHHHHHcc-cHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHHHH
Confidence 9999999999965 99999999999 9999999999 89999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcCCHHHHHHHHHHhcCHHHHHHHHHhcC
Q 000731 1025 AYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCGDVTNGISLLIDARDWEEALRVAFMHR 1104 (1325)
Q Consensus 1025 ~y~~ag~W~~al~la~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~yl~d~e~Av~~~~~~~~w~eA~rLa~~~~ 1104 (1325)
+.+.+..|.+|+.|...+. ++.-....+-++|++..+.|.|+-|.++|.+ ++-++.||.||-+++.|++|++|+.+..
T Consensus 741 aai~akew~kai~ildniq-dqk~~s~yy~~iadhyan~~dfe~ae~lf~e-~~~~~dai~my~k~~kw~da~kla~e~~ 818 (1636)
T KOG3616|consen 741 AAIGAKEWKKAISILDNIQ-DQKTASGYYGEIADHYANKGDFEIAEELFTE-ADLFKDAIDMYGKAGKWEDAFKLAEECH 818 (1636)
T ss_pred HHhhhhhhhhhHhHHHHhh-hhccccccchHHHHHhccchhHHHHHHHHHh-cchhHHHHHHHhccccHHHHHHHHHHhc
Confidence 9999999999999998664 3333345788999999999999999999999 9999999999999999999999999966
Q ss_pred Cchh
Q 000731 1105 REDL 1108 (1325)
Q Consensus 1105 ~~dL 1108 (1325)
+|+-
T Consensus 819 ~~e~ 822 (1636)
T KOG3616|consen 819 GPEA 822 (1636)
T ss_pred Cchh
Confidence 5553
No 175
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.42 E-value=6.2e-11 Score=128.69 Aligned_cols=228 Identities=16% Similarity=0.112 Sum_probs=153.0
Q ss_pred eecCcEEEEEEcCC-CCeEEEEeCCccEEEEeecCceeeeeeccccCCCceec--cC-ccccCCCCeEEEEEec-CCcEE
Q 000731 114 RVEGGVRFISPSPD-GDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVH--EP-ELSSSFSFKSPISWRG-DGKYF 188 (1325)
Q Consensus 114 ~~~~~I~~~awSPD-G~~LA~~s~dgtV~l~s~~~d~~~e~~l~~~~~~~~Vs--~t-qf~~~~~~i~~isWsp-DG~~l 188 (1325)
.|.++|+++..-|- |+++++|+.||.|.+|+-.--.-++...- ..+++. .. .-.+|.-.|.++-|-| |.-.|
T Consensus 41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~l---i~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmF 117 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGL---IAKHKCIVAKQHENGHKYAISSAIWYPIDTGMF 117 (397)
T ss_pred cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccc---eeheeeeccccCCccceeeeeeeEEeeecCcee
Confidence 35678999888774 89999999999999975321110111000 011111 00 0014556788999998 44566
Q ss_pred EEeeccccccCCCCEEEEEECCCCceeeeecCCCCceeEEEEccCC---CeEEEEecCCCCCCCCeEEEEeCC-CceEEE
Q 000731 189 ATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSG---ANIAAVYDRKSENKCPSIVFYERN-GLERSS 264 (1325)
Q Consensus 189 Atvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~~~v~~lawsPdG---~~IAs~~~d~~~~~~~~V~~~e~n-Gl~~~~ 264 (1325)
. +++. |.++||||..+-+....+. ..+.|.+-+|||=. -+||+|.++ ..|+++|.. |--..
T Consensus 118 t-ssSF------DhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~------~~VrLCDi~SGs~sH- 182 (397)
T KOG4283|consen 118 T-SSSF------DHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRD------VQVRLCDIASGSFSH- 182 (397)
T ss_pred e-cccc------cceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCC------CcEEEEeccCCccee-
Confidence 6 5654 5899999997777666654 56778889999954 489999885 579999953 32211
Q ss_pred EEeccCCCCcEEEEEEccCCC-eeEEEEccCCCCeEEEEEeeCCeeEEEeEEEEecCCcEEEEEccCCCcEEEEEecCCc
Q 000731 265 FDINEQIDSTVELLKWNCMSD-LLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQ 343 (1325)
Q Consensus 265 f~l~~~~~~~V~~laWSpDg~-~LAs~~~d~~~~~VqLW~~~n~~wylkqel~~~~~~~~~v~Wsp~~~~~L~~~~~~g~ 343 (1325)
+|.+| ...|.++.|||-++ +||+++.|+ +|+|||+..- .-++.+..+.+
T Consensus 183 -~LsGH-r~~vlaV~Wsp~~e~vLatgsaDg---~irlWDiRra------------------------sgcf~~lD~hn- 232 (397)
T KOG4283|consen 183 -TLSGH-RDGVLAVEWSPSSEWVLATGSADG---AIRLWDIRRA------------------------SGCFRVLDQHN- 232 (397)
T ss_pred -eeccc-cCceEEEEeccCceeEEEecCCCc---eEEEEEeecc------------------------cceeEEeeccc-
Confidence 34444 56899999999998 689999999 9999997531 01122322110
Q ss_pred EEEEEEEEeeeeCCCeeEEEEeCCEEEEeecCCcCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCC
Q 000731 344 ITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLP 423 (1325)
Q Consensus 344 ~~~~~~~~~~~~~d~~~v~viDG~~l~lt~l~~~~vPpPm~~~~l~~~~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~~~ 423 (1325)
++ -||-.. -...|.+.|+.+||+.|| .++++.+.|..+++|+..
T Consensus 233 ----------------------~k-----------~~p~~~-~n~ah~gkvngla~tSd~--~~l~~~gtd~r~r~wn~~ 276 (397)
T KOG4283|consen 233 ----------------------TK-----------RPPILK-TNTAHYGKVNGLAWTSDA--RYLASCGTDDRIRVWNME 276 (397)
T ss_pred ----------------------Cc-----------cCcccc-ccccccceeeeeeecccc--hhhhhccCccceEEeecc
Confidence 00 011111 123578899999999999 899999999999999986
Q ss_pred CC
Q 000731 424 AP 425 (1325)
Q Consensus 424 ~~ 425 (1325)
..
T Consensus 277 ~G 278 (397)
T KOG4283|consen 277 SG 278 (397)
T ss_pred cC
Confidence 53
No 176
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.41 E-value=9.7e-12 Score=151.83 Aligned_cols=221 Identities=14% Similarity=0.163 Sum_probs=141.9
Q ss_pred ceeEEeeecCCCEEEEEeC---CCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEE-ECCC
Q 000731 22 ILQFSALDIEQNRLFFASS---ANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVG-TSSG 97 (1325)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~---~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~V~~v~~spdg~~La~a-s~dG 97 (1325)
.+...+|.+|++.|++++. ...|+.||+ .+++. .. +..+ .+...+.+|+|||+.|+.+ +.+|
T Consensus 205 ~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl--~~g~~-~~-------l~~~----~g~~~~~~~SpDG~~l~~~~s~~g 270 (433)
T PRK04922 205 PILSPAWSPDGKKLAYVSFERGRSAIYVQDL--ATGQR-EL-------VASF----RGINGAPSFSPDGRRLALTLSRDG 270 (433)
T ss_pred ccccccCCCCCCEEEEEecCCCCcEEEEEEC--CCCCE-EE-------eccC----CCCccCceECCCCCEEEEEEeCCC
Confidence 5677899999999999874 346999999 44442 11 1111 1234578999999988754 5566
Q ss_pred --cEEEEeCCCCeEEEeceecCcEEEEEEcCCCCeEEEEeC-CccEEEEeecCceeeeeeccccCCCceeccCccccCCC
Q 000731 98 --LLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTG-FGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFS 174 (1325)
Q Consensus 98 --~I~lw~~~~~~~e~vg~~~~~I~~~awSPDG~~LA~~s~-dgtV~l~s~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~ 174 (1325)
+|.+||+.++.+..+..+.......+|||||+.|+.++. +|...+|..+.+.-....+. +.+ .
T Consensus 271 ~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt------------~~g--~ 336 (433)
T PRK04922 271 NPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLT------------FQG--N 336 (433)
T ss_pred CceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEee------------cCC--C
Confidence 599999998877654444444567899999999998875 44433332211100001111 111 1
Q ss_pred CeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeecCCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEE
Q 000731 175 FKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVF 254 (1325)
Q Consensus 175 ~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~~~v~~lawsPdG~~IAs~~~d~~~~~~~~V~~ 254 (1325)
....++|||||+++|.++. + .+...|.+||..+|+...... .+.....+|+|||+.|+.++.+.. ...|..
T Consensus 337 ~~~~~~~SpDG~~Ia~~~~-~---~~~~~I~v~d~~~g~~~~Lt~--~~~~~~p~~spdG~~i~~~s~~~g---~~~L~~ 407 (433)
T PRK04922 337 YNARASVSPDGKKIAMVHG-S---GGQYRIAVMDLSTGSVRTLTP--GSLDESPSFAPNGSMVLYATREGG---RGVLAA 407 (433)
T ss_pred CccCEEECCCCCEEEEEEC-C---CCceeEEEEECCCCCeEECCC--CCCCCCceECCCCCEEEEEEecCC---ceEEEE
Confidence 2246899999999994332 2 234579999997777654332 224467899999999988876532 456778
Q ss_pred EeCCCceEEEEEeccCCCCcEEEEEEcc
Q 000731 255 YERNGLERSSFDINEQIDSTVELLKWNC 282 (1325)
Q Consensus 255 ~e~nGl~~~~f~l~~~~~~~V~~laWSp 282 (1325)
++.+|..... +..+ .+.+...+|||
T Consensus 408 ~~~~g~~~~~--l~~~-~g~~~~p~wsp 432 (433)
T PRK04922 408 VSTDGRVRQR--LVSA-DGEVREPAWSP 432 (433)
T ss_pred EECCCCceEE--cccC-CCCCCCCccCC
Confidence 8887754332 3222 34577889997
No 177
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.41 E-value=1.2e-11 Score=150.70 Aligned_cols=221 Identities=17% Similarity=0.156 Sum_probs=140.8
Q ss_pred ceeEEeeecCCCEEEEEeCC---CcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEE-EECCC
Q 000731 22 ILQFSALDIEQNRLFFASSA---NNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIV-GTSSG 97 (1325)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~---~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~V~~v~~spdg~~La~-as~dG 97 (1325)
.+...+|.+|++.|++++.. ..|+.||+ .+++. .. +... .+.+.+.+|||||+.|+. .+.+|
T Consensus 197 ~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl--~~g~~-~~-------l~~~----~g~~~~~~~SPDG~~la~~~~~~g 262 (427)
T PRK02889 197 PIISPAWSPDGTKLAYVSFESKKPVVYVHDL--ATGRR-RV-------VANF----KGSNSAPAWSPDGRTLAVALSRDG 262 (427)
T ss_pred CcccceEcCCCCEEEEEEccCCCcEEEEEEC--CCCCE-EE-------eecC----CCCccceEECCCCCEEEEEEccCC
Confidence 67788999999999988753 36999999 45542 11 1111 234668999999999885 56678
Q ss_pred cEEEE--eCCCCeEEEeceecCcEEEEEEcCCCCeEEEEeC-CccEEEEeecCceeeeeeccccCCCceeccCccccCCC
Q 000731 98 LLLLH--SVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTG-FGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFS 174 (1325)
Q Consensus 98 ~I~lw--~~~~~~~e~vg~~~~~I~~~awSPDG~~LA~~s~-dgtV~l~s~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~ 174 (1325)
...|| |.+++.+..+..+.+.+...+|||||+.|+.++. +|...+|..+-+.-....+. |.+ .
T Consensus 263 ~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt------------~~g--~ 328 (427)
T PRK02889 263 NSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVT------------FTG--S 328 (427)
T ss_pred CceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEe------------cCC--C
Confidence 76665 5566666555444455677899999999998875 35555553221100000110 111 1
Q ss_pred CeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeecCCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEE
Q 000731 175 FKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVF 254 (1325)
Q Consensus 175 ~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~~~v~~lawsPdG~~IAs~~~d~~~~~~~~V~~ 254 (1325)
.....+|||||+++|.++ .+ ++...|.+||..+|+....... +.....+|+|||+.|+.++.+.+ ...+.+
T Consensus 329 ~~~~~~~SpDG~~Ia~~s-~~---~g~~~I~v~d~~~g~~~~lt~~--~~~~~p~~spdg~~l~~~~~~~g---~~~l~~ 399 (427)
T PRK02889 329 YNTSPRISPDGKLLAYIS-RV---GGAFKLYVQDLATGQVTALTDT--TRDESPSFAPNGRYILYATQQGG---RSVLAA 399 (427)
T ss_pred CcCceEECCCCCEEEEEE-cc---CCcEEEEEEECCCCCeEEccCC--CCccCceECCCCCEEEEEEecCC---CEEEEE
Confidence 224689999999999443 22 2345799999977776544332 23467899999999998887543 334555
Q ss_pred EeCCCceEEEEEeccCCCCcEEEEEEcc
Q 000731 255 YERNGLERSSFDINEQIDSTVELLKWNC 282 (1325)
Q Consensus 255 ~e~nGl~~~~f~l~~~~~~~V~~laWSp 282 (1325)
.+.+|.... .+..+ .+.+...+|||
T Consensus 400 ~~~~g~~~~--~l~~~-~g~~~~p~wsp 424 (427)
T PRK02889 400 VSSDGRIKQ--RLSVQ-GGDVREPSWGP 424 (427)
T ss_pred EECCCCceE--EeecC-CCCCCCCccCC
Confidence 567775433 23322 34577889998
No 178
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.41 E-value=1.1e-11 Score=134.56 Aligned_cols=118 Identities=15% Similarity=0.233 Sum_probs=86.1
Q ss_pred CCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeecCCCCceeEEEEccCCCeEEEEecCCCCCCCCeEE
Q 000731 174 SFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIV 253 (1325)
Q Consensus 174 ~~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~~~v~~lawsPdG~~IAs~~~d~~~~~~~~V~ 253 (1325)
+.|..++|+|+|+.||.+.+ ..++.|.+||. .++...++. ......|.|||+|++||.++.... .+.|.
T Consensus 60 ~~I~~~~WsP~g~~favi~g-----~~~~~v~lyd~-~~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~---~G~l~ 128 (194)
T PF08662_consen 60 GPIHDVAWSPNGNEFAVIYG-----SMPAKVTLYDV-KGKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNL---NGDLE 128 (194)
T ss_pred CceEEEEECcCCCEEEEEEc-----cCCcccEEEcC-cccEeEeec--CCCceEEEECCCCCEEEEEEccCC---CcEEE
Confidence 35899999999999984433 22469999999 688777764 345688999999999999986432 46799
Q ss_pred EEeCCCceEEEEEeccCCCCcEEEEEEccCCCeeEEEEccC---CCCeEEEEEeeC
Q 000731 254 FYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFE---EYDSVKICFFSN 306 (1325)
Q Consensus 254 ~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~---~~~~VqLW~~~n 306 (1325)
|||.+... .+.......+..++|||||++||+++... -...++||+...
T Consensus 129 ~wd~~~~~----~i~~~~~~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G 180 (194)
T PF08662_consen 129 FWDVRKKK----KISTFEHSDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQG 180 (194)
T ss_pred EEECCCCE----EeeccccCcEEEEEEcCCCCEEEEEEeccceeccccEEEEEecC
Confidence 99976221 11111223578999999999999987531 122689999865
No 179
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.41 E-value=4.1e-13 Score=159.62 Aligned_cols=215 Identities=16% Similarity=0.219 Sum_probs=164.4
Q ss_pred CEEEEEEccCCCEEEEEECCCcEEEEeCCCC--eEEEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeee
Q 000731 77 SITAFDYLMEKEALIVGTSSGLLLLHSVDGN--ATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENP 154 (1325)
Q Consensus 77 ~V~~v~~spdg~~La~as~dG~I~lw~~~~~--~~e~vg~~~~~I~~~awSPDG~~LA~~s~dgtV~l~s~~~d~~~e~~ 154 (1325)
.|.++..-..++.++.|+.|-.+-||...-- .+...| |+++|.|+.|++++.+||.|+.+|+|++| |......
T Consensus 30 av~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~-hespIeSl~f~~~E~LlaagsasgtiK~w----DleeAk~ 104 (825)
T KOG0267|consen 30 AVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTG-HESPIESLTFDTSERLLAAGSASGTIKVW----DLEEAKI 104 (825)
T ss_pred hhceeeeeccceeeccCCCceeeccccccCCchhheeec-cCCcceeeecCcchhhhcccccCCceeee----ehhhhhh
Confidence 4555555666788888888888888987431 222344 69999999999999999999999999886 4444444
Q ss_pred ccccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeecCCCCceeEEEEccCC
Q 000731 155 LEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSG 234 (1325)
Q Consensus 155 l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~~~v~~lawsPdG 234 (1325)
+++.. +|-..+.++.|+|=|.|+| .++. +..+++||..---|.++..+|.+.+..+.|+|+|
T Consensus 105 vrtLt-----------gh~~~~~sv~f~P~~~~~a-~gSt------dtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~G 166 (825)
T KOG0267|consen 105 VRTLT-----------GHLLNITSVDFHPYGEFFA-SGST------DTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDG 166 (825)
T ss_pred hhhhh-----------ccccCcceeeeccceEEec-cccc------cccceehhhhccCceeeecCCcceeEEEeecCCC
Confidence 44433 5556789999999999998 6653 5789999986566778888899999999999999
Q ss_pred CeEEEEecCCCCCCCCeEEEEeC-CCceEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeEEEe
Q 000731 235 ANIAAVYDRKSENKCPSIVFYER-NGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKY 313 (1325)
Q Consensus 235 ~~IAs~~~d~~~~~~~~V~~~e~-nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~n~~wylkq 313 (1325)
+++|++++| +.|++|+. .|....+|.- +++.|.++.|.|-.-+||.|+.|+ +|++|++.+..
T Consensus 167 r~v~~g~ed------~tvki~d~~agk~~~ef~~---~e~~v~sle~hp~e~Lla~Gs~d~---tv~f~dletfe----- 229 (825)
T KOG0267|consen 167 RWVASGGED------NTVKIWDLTAGKLSKEFKS---HEGKVQSLEFHPLEVLLAPGSSDR---TVRFWDLETFE----- 229 (825)
T ss_pred ceeeccCCc------ceeeeeccccccccccccc---ccccccccccCchhhhhccCCCCc---eeeeeccceeE-----
Confidence 999999885 67999994 4544444432 367899999999999999999999 99999998642
Q ss_pred EEEEec----CCcEEEEEccCCC
Q 000731 314 EIRYLR----RDGIRFMWHPTKP 332 (1325)
Q Consensus 314 el~~~~----~~~~~v~Wsp~~~ 332 (1325)
+.... ..+.+..|+|++.
T Consensus 230 -~I~s~~~~~~~v~~~~fn~~~~ 251 (825)
T KOG0267|consen 230 -VISSGKPETDGVRSLAFNPDGK 251 (825)
T ss_pred -EeeccCCccCCceeeeecCCce
Confidence 22111 1237888999874
No 180
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.40 E-value=4.5e-11 Score=145.89 Aligned_cols=203 Identities=13% Similarity=0.092 Sum_probs=129.8
Q ss_pred CCEEEEEEccCCCEEEEEECC---CcEEEEeCCCCeEEEeceecCcEEEEEEcCCCCeEEEE-eCCcc--EEEEeecCce
Q 000731 76 DSITAFDYLMEKEALIVGTSS---GLLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVT-TGFGQ--ILVMTHDWDL 149 (1325)
Q Consensus 76 ~~V~~v~~spdg~~La~as~d---G~I~lw~~~~~~~e~vg~~~~~I~~~awSPDG~~LA~~-s~dgt--V~l~s~~~d~ 149 (1325)
+.+.+..|||||+.|+..+.+ ..|.+|+++++..+.+....+.+.+.+|||||+.||.. +.+|. |.+|+.....
T Consensus 199 ~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~ 278 (430)
T PRK00178 199 EPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQ 278 (430)
T ss_pred CceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCC
Confidence 468899999999999877643 35888999988776555445556789999999999865 34553 5444422111
Q ss_pred eeeeeccccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeecCCCCceeEEE
Q 000731 150 LYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLE 229 (1325)
Q Consensus 150 ~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~~~v~~la 229 (1325)
.. .+.. +.......+|+|||+.++.++.. .+...|.+||..+|+....... .......+
T Consensus 279 ~~--~lt~--------------~~~~~~~~~~spDg~~i~f~s~~----~g~~~iy~~d~~~g~~~~lt~~-~~~~~~~~ 337 (430)
T PRK00178 279 LS--RVTN--------------HPAIDTEPFWGKDGRTLYFTSDR----GGKPQIYKVNVNGGRAERVTFV-GNYNARPR 337 (430)
T ss_pred eE--Eccc--------------CCCCcCCeEECCCCCEEEEEECC----CCCceEEEEECCCCCEEEeecC-CCCccceE
Confidence 11 1111 11223568999999998844321 2345788889877776543321 12234678
Q ss_pred EccCCCeEEEEecCCCCCCCCeEEEEeCCCceEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeC
Q 000731 230 WMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSN 306 (1325)
Q Consensus 230 wsPdG~~IAs~~~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~n 306 (1325)
|+|||+.|+..+.... ...|.+++..+..... +.. .......+|||||+.|+..+.+++...+.+++...
T Consensus 338 ~Spdg~~i~~~~~~~~---~~~l~~~dl~tg~~~~--lt~--~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g 407 (430)
T PRK00178 338 LSADGKTLVMVHRQDG---NFHVAAQDLQRGSVRI--LTD--TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSING 407 (430)
T ss_pred ECCCCCEEEEEEccCC---ceEEEEEECCCCCEEE--ccC--CCCCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence 9999999998876422 3468888865433222 221 11223568999999999988765434566666643
No 181
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.40 E-value=1.7e-11 Score=150.00 Aligned_cols=223 Identities=14% Similarity=0.097 Sum_probs=134.1
Q ss_pred CCEEEEEEccCCCEEEEEEC-CC--cEEEEeCCCCeEEEeceecCcEEEEEEcCCCCeEEEE-eCCcc--EEEEeecCce
Q 000731 76 DSITAFDYLMEKEALIVGTS-SG--LLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVT-TGFGQ--ILVMTHDWDL 149 (1325)
Q Consensus 76 ~~V~~v~~spdg~~La~as~-dG--~I~lw~~~~~~~e~vg~~~~~I~~~awSPDG~~LA~~-s~dgt--V~l~s~~~d~ 149 (1325)
..+.+..|||||+.|+.++. +| .|.+||+.+++...+....+...+.+|||||+.||.+ +.+|. |.+|+.....
T Consensus 218 ~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~ 297 (448)
T PRK04792 218 EPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKA 297 (448)
T ss_pred CcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCC
Confidence 45778999999999997754 33 4888899887665444445555688999999999875 45665 4443321111
Q ss_pred eeeeeccccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeecCCCCceeEEE
Q 000731 150 LYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLE 229 (1325)
Q Consensus 150 ~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~~~v~~la 229 (1325)
. ..+. .+.......+|+|||+++++++.. .+...|.++|..+|+...... ........+
T Consensus 298 ~--~~lt--------------~~~~~~~~p~wSpDG~~I~f~s~~----~g~~~Iy~~dl~~g~~~~Lt~-~g~~~~~~~ 356 (448)
T PRK04792 298 L--TRIT--------------RHRAIDTEPSWHPDGKSLIFTSER----GGKPQIYRVNLASGKVSRLTF-EGEQNLGGS 356 (448)
T ss_pred e--EECc--------------cCCCCccceEECCCCCEEEEEECC----CCCceEEEEECCCCCEEEEec-CCCCCcCee
Confidence 1 1111 111233678999999999844422 234578888987777654321 112234579
Q ss_pred EccCCCeEEEEecCCCCCCCCeEEEEeCCCceEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCee
Q 000731 230 WMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHW 309 (1325)
Q Consensus 230 wsPdG~~IAs~~~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~n~~w 309 (1325)
|+|||+.|+.++.... ...|..++..+..... +... ....+.+|||||+.|+..+.++....+.+++... .+
T Consensus 357 ~SpDG~~l~~~~~~~g---~~~I~~~dl~~g~~~~--lt~~--~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G-~~ 428 (448)
T PRK04792 357 ITPDGRSMIMVNRTNG---KFNIARQDLETGAMQV--LTST--RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDG-RF 428 (448)
T ss_pred ECCCCCEEEEEEecCC---ceEEEEEECCCCCeEE--ccCC--CCCCCceECCCCCEEEEEEecCCceEEEEEECCC-Cc
Confidence 9999999998876422 3456566755433221 2211 1223568999999999887765333566666543 22
Q ss_pred EEEeEEEEecCCcEEEEEcc
Q 000731 310 YLKYEIRYLRRDGIRFMWHP 329 (1325)
Q Consensus 310 ylkqel~~~~~~~~~v~Wsp 329 (1325)
++.+..+........|+|
T Consensus 429 --~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 429 --KARLPAGQGEVKSPAWSP 446 (448)
T ss_pred --eEECcCCCCCcCCCccCC
Confidence 223322222224566776
No 182
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.40 E-value=1.6e-12 Score=162.28 Aligned_cols=251 Identities=12% Similarity=0.088 Sum_probs=175.5
Q ss_pred ceeEEeeecCCCE----EEEEeCCCcEEEEecccccccccce-eeccccccccccCCCCCCEEEEEEccCCC-EEEEEEC
Q 000731 22 ILQFSALDIEQNR----LFFASSANNIYSAQLSSFQNERASI-KTAISAEIEHIDLEPGDSITAFDYLMEKE-ALIVGTS 95 (1325)
Q Consensus 22 ~~~~~~~d~~~~~----l~~~s~~~~i~~~~~~~~~~~~~~~-~~~l~~~l~~~~~~~~~~V~~v~~spdg~-~La~as~ 95 (1325)
.+..++|-.-++. |.-+.+|++|..||........... +.+ ...| .+.|.++.|.|.+. .||+|..
T Consensus 66 rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~----~~~h----~G~V~gLDfN~~q~nlLASGa~ 137 (1049)
T KOG0307|consen 66 RFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLAT----KSKH----TGPVLGLDFNPFQGNLLASGAD 137 (1049)
T ss_pred cceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhh----hccc----CCceeeeeccccCCceeeccCC
Confidence 6777888876655 7777889999999995321111011 111 1112 57899999999887 9999999
Q ss_pred CCcEEEEeCCCCeEE-Eece--ecCcEEEEEEcCC-CCeEEEEeCCccEEEEeec-CceeeeeeccccCCCceeccCccc
Q 000731 96 SGLLLLHSVDGNATE-VVGR--VEGGVRFISPSPD-GDLLGVTTGFGQILVMTHD-WDLLYENPLEELAEGFDVHEPELS 170 (1325)
Q Consensus 96 dG~I~lw~~~~~~~e-~vg~--~~~~I~~~awSPD-G~~LA~~s~dgtV~l~s~~-~d~~~e~~l~~~~~~~~Vs~tqf~ 170 (1325)
||+|.|||++.-... ..|. ..+.|.+++|+-. ...||+++.+|.+.+|+-. -.++.....+.
T Consensus 138 ~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~------------- 204 (1049)
T KOG0307|consen 138 DGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTP------------- 204 (1049)
T ss_pred CCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCC-------------
Confidence 999999999763221 2322 3467999999865 6789999999999887622 12222222111
Q ss_pred cCCCCeEEEEEecCCcE-EEEeeccccccCCCCEEEEEECC-CCceeeeecCCCCceeEEEEccCC-CeEEEEecCCCCC
Q 000731 171 SSFSFKSPISWRGDGKY-FATLSEFCNSSKLHKRLKVWERD-SGTLQASSELKAFMGAVLEWMPSG-ANIAAVYDRKSEN 247 (1325)
Q Consensus 171 ~~~~~i~~isWspDG~~-lAtvss~d~~~~~d~~irVWd~~-~G~l~~t~e~~~~~v~~lawsPdG-~~IAs~~~d~~~~ 247 (1325)
.......++|.||+.. ++ +++-| ...-.|++||.+ .-..+.++++|...+-+++|+|.+ .+++|++.|
T Consensus 205 -~~~~~S~l~WhP~~aTql~-~As~d---d~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD---- 275 (1049)
T KOG0307|consen 205 -GRMHCSVLAWHPDHATQLL-VASGD---DSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKD---- 275 (1049)
T ss_pred -CccceeeeeeCCCCceeee-eecCC---CCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCC----
Confidence 1123578999999963 44 55433 345689999953 445667778899999999999998 777888775
Q ss_pred CCCeEEEEeCC-CceEEEEEeccCCCCcEEEEEEccCCC-eeEEEEccCCCCeEEEEEeeCCeeE
Q 000731 248 KCPSIVFYERN-GLERSSFDINEQIDSTVELLKWNCMSD-LLAAVVRFEEYDSVKICFFSNNHWY 310 (1325)
Q Consensus 248 ~~~~V~~~e~n-Gl~~~~f~l~~~~~~~V~~laWSpDg~-~LAs~~~d~~~~~VqLW~~~n~~wy 310 (1325)
+.|..|+.| |...++ ++. ..+++..+.|+|--- ++|+++-|+ .|.|+.+.+..|+
T Consensus 276 --~~ii~wN~~tgEvl~~--~p~-~~nW~fdv~w~pr~P~~~A~asfdg---kI~I~sl~~~~~~ 332 (1049)
T KOG0307|consen 276 --NRIICWNPNTGEVLGE--LPA-QGNWCFDVQWCPRNPSVMAAASFDG---KISIYSLQGTDTD 332 (1049)
T ss_pred --CCeeEecCCCceEeee--cCC-CCcceeeeeecCCCcchhhhheecc---ceeeeeeecCCcc
Confidence 579999976 333333 232 357899999999655 899999998 8999998775543
No 183
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.38 E-value=4.1e-12 Score=148.21 Aligned_cols=203 Identities=17% Similarity=0.228 Sum_probs=140.1
Q ss_pred EccCCCEEEE--EECCCcEEEEeCCC-CeEE---Eecee-cCcEEEEEEcC-CCCeEEEEeCCccEEEEeecCceeeeee
Q 000731 83 YLMEKEALIV--GTSSGLLLLHSVDG-NATE---VVGRV-EGGVRFISPSP-DGDLLGVTTGFGQILVMTHDWDLLYENP 154 (1325)
Q Consensus 83 ~spdg~~La~--as~dG~I~lw~~~~-~~~e---~vg~~-~~~I~~~awSP-DG~~LA~~s~dgtV~l~s~~~d~~~e~~ 154 (1325)
|+.+.+..|+ ++..|.|-|++++. +++. +-|-+ ...|+.+.|.| |.+.||+++.||.|.+|-..-+-+.+..
T Consensus 587 fcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~ 666 (1012)
T KOG1445|consen 587 FCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENE 666 (1012)
T ss_pred eeeccceEEEEecCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCccc
Confidence 4555566653 56689999999863 3321 11211 23599999999 7899999999999999853222111111
Q ss_pred ccccCCCceeccCccccCCCCeEEEEEecCC-cEEEEeeccccccCCCCEEEEEECCCCceeeeecCCCCceeEEEEccC
Q 000731 155 LEELAEGFDVHEPELSSSFSFKSPISWRGDG-KYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPS 233 (1325)
Q Consensus 155 l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG-~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~~~v~~lawsPd 233 (1325)
..+ ++....|.+.|+++.|.|=. ..|| ++++ |-+|++||..++++...+.+|.+.+-++|||||
T Consensus 667 ~tP--------e~~lt~h~eKI~slRfHPLAadvLa-~asy------d~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpd 731 (1012)
T KOG1445|consen 667 MTP--------EKILTIHGEKITSLRFHPLAADVLA-VASY------DSTIELWDLANAKLYSRLVGHTDQIFGIAWSPD 731 (1012)
T ss_pred CCc--------ceeeecccceEEEEEecchhhhHhh-hhhc------cceeeeeehhhhhhhheeccCcCceeEEEECCC
Confidence 111 22333677889999999965 4566 6654 479999999999999999999999999999999
Q ss_pred CCeEEEEecCCCCCCCCeEEEEeCCCceEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCC-CCeEEEEEeeC
Q 000731 234 GANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEE-YDSVKICFFSN 306 (1325)
Q Consensus 234 G~~IAs~~~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~-~~~VqLW~~~n 306 (1325)
|++||+.+.| ++|++|+........+.-+++-...--.|.|-+||.++.+.+-|.. ...|++|+...
T Consensus 732 Gr~~AtVcKD------g~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~ 799 (1012)
T KOG1445|consen 732 GRRIATVCKD------GTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQT 799 (1012)
T ss_pred CcceeeeecC------ceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhh
Confidence 9999999986 5799998532111111111222233457899999999999887763 22688887653
No 184
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.37 E-value=6.6e-11 Score=143.58 Aligned_cols=202 Identities=18% Similarity=0.172 Sum_probs=130.6
Q ss_pred CCCEEEEEEccCCCEEEEEECC---CcEEEEeCCCCeEEEeceecCcEEEEEEcCCCCeEEEEe-CCc--cEEEEeecCc
Q 000731 75 GDSITAFDYLMEKEALIVGTSS---GLLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTT-GFG--QILVMTHDWD 148 (1325)
Q Consensus 75 ~~~V~~v~~spdg~~La~as~d---G~I~lw~~~~~~~e~vg~~~~~I~~~awSPDG~~LA~~s-~dg--tV~l~s~~~d 148 (1325)
++.+.+..|+|||+.|+.++.+ .+|.+|++.+++...+..+.+.+.+++|||||+.|+... .++ .|.+|+....
T Consensus 189 ~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~ 268 (417)
T TIGR02800 189 REPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGK 268 (417)
T ss_pred CCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCC
Confidence 3458889999999999987754 379999999876654444566678899999999888654 344 3555542211
Q ss_pred eeeeeeccccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeecCCCCceeEE
Q 000731 149 LLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVL 228 (1325)
Q Consensus 149 ~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~~~v~~l 228 (1325)
.. ..+. .+.......+|+|||++|++++.. .+...|.+||..+|+...... .......+
T Consensus 269 ~~--~~l~--------------~~~~~~~~~~~s~dg~~l~~~s~~----~g~~~iy~~d~~~~~~~~l~~-~~~~~~~~ 327 (417)
T TIGR02800 269 QL--TRLT--------------NGPGIDTEPSWSPDGKSIAFTSDR----GGSPQIYMMDADGGEVRRLTF-RGGYNASP 327 (417)
T ss_pred CE--EECC--------------CCCCCCCCEEECCCCCEEEEEECC----CCCceEEEEECCCCCEEEeec-CCCCccCe
Confidence 11 1111 111223467999999998844422 233578889986666544332 33445778
Q ss_pred EEccCCCeEEEEecCCCCCCCCeEEEEeCCCceEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEe
Q 000731 229 EWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFF 304 (1325)
Q Consensus 229 awsPdG~~IAs~~~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~ 304 (1325)
+|+|+|++|+.+..+.+ ...|.+|+.++.... .+.. .......+|+|||+.|+..+.++....+.+.+.
T Consensus 328 ~~spdg~~i~~~~~~~~---~~~i~~~d~~~~~~~--~l~~--~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~ 396 (417)
T TIGR02800 328 SWSPDGDLIAFVHREGG---GFNIAVMDLDGGGER--VLTD--TGLDESPSFAPNGRMILYATTRGGRGVLGLVST 396 (417)
T ss_pred EECCCCCEEEEEEccCC---ceEEEEEeCCCCCeE--EccC--CCCCCCceECCCCCEEEEEEeCCCcEEEEEEEC
Confidence 99999999999877532 456888886652222 1221 123456789999999999887663333444443
No 185
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.37 E-value=6.1e-11 Score=132.02 Aligned_cols=201 Identities=13% Similarity=0.191 Sum_probs=136.0
Q ss_pred CCCEEEEEEccCCCEEEEEECCCcEEEEeCCCCeEEEece-ecCcEEEEEEcCCCCe-EEEEeCCccEEEEeecCceeee
Q 000731 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATEVVGR-VEGGVRFISPSPDGDL-LGVTTGFGQILVMTHDWDLLYE 152 (1325)
Q Consensus 75 ~~~V~~v~~spdg~~La~as~dG~I~lw~~~~~~~e~vg~-~~~~I~~~awSPDG~~-LA~~s~dgtV~l~s~~~d~~~e 152 (1325)
.-.+..++|++---.+|+++.|-.|++|+.+......+.+ -...|+|++|-|-+.. ||+|.. +-|-+|+.+......
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~ksst~pt~Lks~sQrnvtclawRPlsaselavgCr-~gIciW~~s~tln~~ 176 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSSTCPTKLKSVSQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLNAN 176 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCCCCCceecchhhcceeEEEeccCCcceeeeeec-ceeEEEEcCcccccc
Confidence 3468899999988888999999999999987633222222 2467999999998755 555544 558899755332222
Q ss_pred eeccccC-CCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeecCCCCceeEEEEc
Q 000731 153 NPLEELA-EGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWM 231 (1325)
Q Consensus 153 ~~l~~~~-~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~~~v~~laws 231 (1325)
..+..-. +-..| .+-.+| ..|.++.|.+||..++ .++. +++.|+|||+++|..+..-....|.+.-+-||
T Consensus 177 r~~~~~s~~~~qv--l~~pgh-~pVtsmqwn~dgt~l~-tAS~-----gsssi~iWdpdtg~~~pL~~~glgg~slLkwS 247 (445)
T KOG2139|consen 177 RNIRMMSTHHLQV--LQDPGH-NPVTSMQWNEDGTILV-TASF-----GSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWS 247 (445)
T ss_pred cccccccccchhh--eeCCCC-ceeeEEEEcCCCCEEe-eccc-----CcceEEEEcCCCCCcccccccCCCceeeEEEc
Confidence 2111000 00001 111133 5789999999999999 5553 46899999999998776543344556889999
Q ss_pred cCCCeEEEEecCCCCCCCCeEEEEeCC-CceEEEEEeccCCCCcEEEEEEccCCCeeEEEEccC
Q 000731 232 PSGANIAAVYDRKSENKCPSIVFYERN-GLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFE 294 (1325)
Q Consensus 232 PdG~~IAs~~~d~~~~~~~~V~~~e~n-Gl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~ 294 (1325)
|||..|-++..| ..-++|..| -+....+.+ +.+.|..-.|||+|..|..++...
T Consensus 248 Pdgd~lfaAt~d------avfrlw~e~q~wt~erw~l---gsgrvqtacWspcGsfLLf~~sgs 302 (445)
T KOG2139|consen 248 PDGDVLFAATCD------AVFRLWQENQSWTKERWIL---GSGRVQTACWSPCGSFLLFACSGS 302 (445)
T ss_pred CCCCEEEEeccc------ceeeeehhcccceecceec---cCCceeeeeecCCCCEEEEEEcCC
Confidence 999998877775 458889433 222211222 245899999999999988877654
No 186
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.33 E-value=1.2e-10 Score=128.03 Aligned_cols=278 Identities=12% Similarity=0.082 Sum_probs=179.5
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccc--ccc--ccceeeccccccccccCCCCCCEEEEEEc-------cCCCEE
Q 000731 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSF--QNE--RASIKTAISAEIEHIDLEPGDSITAFDYL-------MEKEAL 90 (1325)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~--~~~--~~~~~~~l~~~l~~~~~~~~~~V~~v~~s-------pdg~~L 90 (1325)
-..++-|.||+..|.+-++|+.+-.|+++.. .++ ...... +. .+.-...++.|.+-.|- |+....
T Consensus 51 f~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~-~~---~~~r~~eg~tvydy~wYs~M~s~qP~t~l~ 126 (406)
T KOG2919|consen 51 FLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFS-KH---LSYRYQEGETVYDYCWYSRMKSDQPSTNLF 126 (406)
T ss_pred hhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccc-cc---eeEEeccCCEEEEEEeeeccccCCCcccee
Confidence 3455679999999999999998999998621 111 000000 00 01112225678888775 678899
Q ss_pred EEEECCCcEEEEeCCCCeEEE----eceec--CcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeeeccccCCCcee
Q 000731 91 IVGTSSGLLLLHSVDGNATEV----VGRVE--GGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDV 164 (1325)
Q Consensus 91 a~as~dG~I~lw~~~~~~~e~----vg~~~--~~I~~~awSPDG~~LA~~s~dgtV~l~s~~~d~~~e~~l~~~~~~~~V 164 (1325)
|+.+.+.-|+|||.-++++.. ..+.+ .+-.+++|||||+.|.. +-..+|++++. .. +....+ |
T Consensus 127 a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfa-GykrcirvFdt----~R--pGr~c~----v 195 (406)
T KOG2919|consen 127 AVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFA-GYKRCIRVFDT----SR--PGRDCP----V 195 (406)
T ss_pred eeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEee-cccceEEEeec----cC--CCCCCc----c
Confidence 999999999999998887642 11111 13458999999999864 55668977542 10 000000 0
Q ss_pred ccCccc---cCCCCeEEEEEecCC-cEEEEeeccccccCCCCEEEEEECCCCceeeeecCCCCceeEEEEccCCCeEEEE
Q 000731 165 HEPELS---SSFSFKSPISWRGDG-KYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAV 240 (1325)
Q Consensus 165 s~tqf~---~~~~~i~~isWspDG-~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~~~v~~lawsPdG~~IAs~ 240 (1325)
-.|.++ +..+-+.+++|+|-. ..+| +++.. +++-||+-..+.++.++-+|.|-|+.|.|.|+|+.+-||
T Consensus 196 y~t~~~~k~gq~giisc~a~sP~~~~~~a-~gsY~------q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsG 268 (406)
T KOG2919|consen 196 YTTVTKGKFGQKGIISCFAFSPMDSKTLA-VGSYG------QRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSG 268 (406)
T ss_pred hhhhhcccccccceeeeeeccCCCCccee-eeccc------ceeeeEecCCCCceeeecccCCCeeeEEeccCcCeeccc
Confidence 011111 234567899999954 5888 88763 678888876788888888999999999999999999999
Q ss_pred ecCCCCCCCCeEEEEeCCCceEEEEEeccCCCCcEEEE--EEccCCCeeEEEEccCCCCeEEEEEeeCC-eeEEEeEEEE
Q 000731 241 YDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELL--KWNCMSDLLAAVVRFEEYDSVKICFFSNN-HWYLKYEIRY 317 (1325)
Q Consensus 241 ~~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~l--aWSpDg~~LAs~~~d~~~~~VqLW~~~n~-~wylkqel~~ 317 (1325)
.+. +..|-.||.---+.--+.|..+-+..-..| ..-|+|++||+|+.|+ .|++||.+.+ .|. ..+
T Consensus 269 aRk-----~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG---~V~vwdlk~~gn~~----sv~ 336 (406)
T KOG2919|consen 269 ARK-----DDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDG---SVRVWDLKDLGNEV----SVT 336 (406)
T ss_pred ccC-----CCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCc---cEEEEecCCCCCcc----ccc
Confidence 885 467888984211111122221111112233 3469999999999999 9999999863 221 111
Q ss_pred ec-CCc-EEEEEccCCCc
Q 000731 318 LR-RDG-IRFMWHPTKPL 333 (1325)
Q Consensus 318 ~~-~~~-~~v~Wsp~~~~ 333 (1325)
.. .+. ..|+.+|--|.
T Consensus 337 ~~~sd~vNgvslnP~mpi 354 (406)
T KOG2919|consen 337 GNYSDTVNGVSLNPIMPI 354 (406)
T ss_pred ccccccccceecCcccce
Confidence 11 222 67889987553
No 187
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.32 E-value=1.9e-10 Score=126.06 Aligned_cols=247 Identities=11% Similarity=0.061 Sum_probs=160.3
Q ss_pred eeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEEE
Q 000731 23 LQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLH 102 (1325)
Q Consensus 23 ~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~V~~v~~spdg~~La~as~dG~I~lw 102 (1325)
-.++-|.+-|+.|.+++.++.++.||. .|... .++ +.+|. -.|.+++||+||+.|.++|.|-.|++|
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~--~T~~i-ar~------lsaH~----~pi~sl~WS~dgr~LltsS~D~si~lw 92 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDF--DTFRI-ARM------LSAHV----RPITSLCWSRDGRKLLTSSRDWSIKLW 92 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEc--cccch-hhh------hhccc----cceeEEEecCCCCEeeeecCCceeEEE
Confidence 456778899999999999999999999 45542 122 34442 379999999999999999999999999
Q ss_pred eCCCCeEEEeceecCcEEEEEEcCCCCeEEEEeC--C-ccEEEEeecCceeeeeeccccC---------------CCcee
Q 000731 103 SVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTG--F-GQILVMTHDWDLLYENPLEELA---------------EGFDV 164 (1325)
Q Consensus 103 ~~~~~~~e~vg~~~~~I~~~awSPDG~~LA~~s~--d-gtV~l~s~~~d~~~e~~l~~~~---------------~~~~V 164 (1325)
|+..+.+---=.++..|+.+.|.|--...++++- . -+|...+ ++... .+..++ .++.|
T Consensus 93 Dl~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s---~~~h~-~Lp~d~d~dln~sas~~~fdr~g~yI 168 (405)
T KOG1273|consen 93 DLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFS---DPKHS-VLPKDDDGDLNSSASHGVFDRRGKYI 168 (405)
T ss_pred eccCCCceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEec---CCcee-eccCCCccccccccccccccCCCCEE
Confidence 9976554211135788999999997766666652 1 1222111 12211 111111 11221
Q ss_pred -c------------cCc-----cccC-CCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceee--eecCC--
Q 000731 165 -H------------EPE-----LSSS-FSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQA--SSELK-- 221 (1325)
Q Consensus 165 -s------------~tq-----f~~~-~~~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~--t~e~~-- 221 (1325)
+ +|+ |+-. ...|-+|-++-.|.+|+ +.+ .||+||+|+..+ -... -.++.
T Consensus 169 itGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~li-iNt------sDRvIR~ye~~d-i~~~~r~~e~e~~ 240 (405)
T KOG1273|consen 169 ITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLI-INT------SDRVIRTYEISD-IDDEGRDGEVEPE 240 (405)
T ss_pred EEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEE-Eec------CCceEEEEehhh-hcccCccCCcChh
Confidence 0 110 1111 14567889999999999 764 479999998731 1111 00100
Q ss_pred ---CCce-----eEEEEccCCCeEEEEecCCCCCCCCeEEEEeCC-CceEEEEEeccCCCCcEEEEEEccCCCeeEEEEc
Q 000731 222 ---AFMG-----AVLEWMPSGANIAAVYDRKSENKCPSIVFYERN-GLERSSFDINEQIDSTVELLKWNCMSDLLAAVVR 292 (1325)
Q Consensus 222 ---~~~v-----~~lawsPdG~~IAs~~~d~~~~~~~~V~~~e~n-Gl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~ 292 (1325)
...| .+++||-+|.+|..++.. .+.+-+||++ |.... .|.+.......++.|.|-.-++|+-.+
T Consensus 241 ~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~-----aHaLYIWE~~~GsLVK--ILhG~kgE~l~DV~whp~rp~i~si~s 313 (405)
T KOG1273|consen 241 HKLQDVVNKLQWKKCCFSGDGEYVCAGSAR-----AHALYIWEKSIGSLVK--ILHGTKGEELLDVNWHPVRPIIASIAS 313 (405)
T ss_pred HHHHHHHhhhhhhheeecCCccEEEecccc-----ceeEEEEecCCcceee--eecCCchhheeecccccceeeeeeccC
Confidence 0011 578899999999877754 5789999986 43322 344433345788999999999999844
Q ss_pred cCCCCeEEEEEee
Q 000731 293 FEEYDSVKICFFS 305 (1325)
Q Consensus 293 d~~~~~VqLW~~~ 305 (1325)
+ +|.+|...
T Consensus 314 g----~v~iw~~~ 322 (405)
T KOG1273|consen 314 G----VVYIWAVV 322 (405)
T ss_pred C----ceEEEEee
Confidence 3 69999975
No 188
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.32 E-value=8.7e-11 Score=128.19 Aligned_cols=275 Identities=12% Similarity=0.096 Sum_probs=173.8
Q ss_pred cCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeecCCCCceeEEEEccCCCeEEEEecCCCCCCCC
Q 000731 171 SSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCP 250 (1325)
Q Consensus 171 ~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~~~v~~lawsPdG~~IAs~~~d~~~~~~~ 250 (1325)
+|.++|+.++--.--..++ .++ .|.+-+||..++|.++.+..+|.|.|++|.|+|+|.++++++.|.+
T Consensus 146 GHkDGiW~Vaa~~tqpi~g-tAS------ADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~t----- 213 (481)
T KOG0300|consen 146 GHKDGIWHVAADSTQPICG-TAS------ADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDET----- 213 (481)
T ss_pred ccccceeeehhhcCCccee-ecc------cccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcc-----
Confidence 7788999987654444555 343 3689999999999999999999999999999999999999988743
Q ss_pred eEEEEe-------------------------------CCCceEE---EEEec----cCCCCcEEEEEEccCCCeeEEEEc
Q 000731 251 SIVFYE-------------------------------RNGLERS---SFDIN----EQIDSTVELLKWNCMSDLLAAVVR 292 (1325)
Q Consensus 251 ~V~~~e-------------------------------~nGl~~~---~f~l~----~~~~~~V~~laWSpDg~~LAs~~~ 292 (1325)
-.+|. ++|.... ....| ..+.+.|....|-..|+.+++++.
T Consensus 214 -aHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSW 292 (481)
T KOG0300|consen 214 -AHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASW 292 (481)
T ss_pred -hHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeec
Confidence 22221 0000000 01111 123467888999999999999999
Q ss_pred cCCCCeEEEEEeeCCeeEEEeEEEEecCCcEEEEEccCCCcEEEEEecCCcEEEEEEEE---eee--------------e
Q 000731 293 FEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIW---TTA--------------V 355 (1325)
Q Consensus 293 d~~~~~VqLW~~~n~~wylkqel~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~---~~~--------------~ 355 (1325)
|+ +--|||+.... +-+.+..|..+-+.+.=||...+ +...+.|-++..++|.- +++ .
T Consensus 293 DR---TAnlwDVEtge--~v~~LtGHd~ELtHcstHptQrL-VvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~ 366 (481)
T KOG0300|consen 293 DR---TANLWDVETGE--VVNILTGHDSELTHCSTHPTQRL-VVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFN 366 (481)
T ss_pred cc---cceeeeeccCc--eeccccCcchhccccccCCcceE-EEEeccCceeEeccchhhcceeeeecccccceeEEEEe
Confidence 99 99999998764 23344443322244444443221 11112222222222210 000 1
Q ss_pred CCCeeEEEEeCCEEEEeecCCcCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccccccCCc
Q 000731 356 MENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTE 435 (1325)
Q Consensus 356 ~d~~~v~viDG~~l~lt~l~~~~vPpPm~~~~l~~~~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~~~~~~~~~~~~g~~ 435 (1325)
-|..+|...|+.++++|+|+. +-.|+. ++..+++++.|+.|..+ .++|.--.+..|+|||+.+.... .++.
T Consensus 367 ~dd~vVSgSDDrTvKvWdLrN--MRsplA--TIRtdS~~NRvavs~g~--~iIAiPhDNRqvRlfDlnG~Rla-RlPr-- 437 (481)
T KOG0300|consen 367 TDDRVVSGSDDRTVKVWDLRN--MRSPLA--TIRTDSPANRVAVSKGH--PIIAIPHDNRQVRLFDLNGNRLA-RLPR-- 437 (481)
T ss_pred cCCceeecCCCceEEEeeecc--ccCcce--eeecCCccceeEeecCC--ceEEeccCCceEEEEecCCCccc-cCCc--
Confidence 244567778999999999974 445554 67889999999999888 79999988899999998752111 1110
Q ss_pred eeEeeeccccccCcEEEEEEecCCeEEEEEecCCCCceEEEEe
Q 000731 436 FVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGA 478 (1325)
Q Consensus 436 ~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~~~~~~~~~~~ 478 (1325)
+...+|..-|.+.+|+.+.-..-.-..+....+.-|.+
T Consensus 438 -----tsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~i 475 (481)
T KOG0300|consen 438 -----TSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKI 475 (481)
T ss_pred -----ccccccceeeeeeeccccCcccccccccccceeeeeEe
Confidence 11123444577889988775422222233244444444
No 189
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.32 E-value=2e-09 Score=132.01 Aligned_cols=335 Identities=12% Similarity=0.095 Sum_probs=202.3
Q ss_pred eEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEEEe
Q 000731 24 QFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHS 103 (1325)
Q Consensus 24 ~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~V~~v~~spdg~~La~as~dG~I~lw~ 103 (1325)
..+++...++..+++-..+ |+.|... .+. +....-+. -..|.+ .++++++||.++.+|+|-.||.|.+|.
T Consensus 164 ~~I~~~~~ge~~~i~~~~~-~~~~~v~--~~~--~~~~~~~~-~~~Htf----~~t~~~~spn~~~~Aa~d~dGrI~vw~ 233 (792)
T KOG1963|consen 164 KSIVDNNSGEFKGIVHMCK-IHIYFVP--KHT--KHTSSRDI-TVHHTF----NITCVALSPNERYLAAGDSDGRILVWR 233 (792)
T ss_pred ccEEEcCCceEEEEEEeee-EEEEEec--ccc--eeeccchh-hhhhcc----cceeEEeccccceEEEeccCCcEEEEe
Confidence 3445555555555555555 7777773 211 11111000 122433 389999999999999999999999997
Q ss_pred CCC-----CeEEEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeeeccccCCCceeccCccccCCCCeEE
Q 000731 104 VDG-----NATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSP 178 (1325)
Q Consensus 104 ~~~-----~~~e~vg~~~~~I~~~awSPDG~~LA~~s~dgtV~l~s~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~ 178 (1325)
-.+ ..+.+..=|.+.|++++||+||..|.+|+..+-+.+|...-. ..+-|.- -...+..
T Consensus 234 d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~--~kqfLPR--------------Lgs~I~~ 297 (792)
T KOG1963|consen 234 DFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETG--KKQFLPR--------------LGSPILH 297 (792)
T ss_pred ccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCC--Ccccccc--------------cCCeeEE
Confidence 544 123455556788999999999999999999999999864211 1111111 1246789
Q ss_pred EEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeee---ecCC--------CCceeEEEEccCCCeEEEEecCCCCC
Q 000731 179 ISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQAS---SELK--------AFMGAVLEWMPSGANIAAVYDRKSEN 247 (1325)
Q Consensus 179 isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t---~e~~--------~~~v~~lawsPdG~~IAs~~~d~~~~ 247 (1325)
+.|||||.+.+ +. .+|..|.+-...+-+..++ ..+. .++...++..|.-+.++-.+.
T Consensus 298 i~vS~ds~~~s-l~------~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~----- 365 (792)
T KOG1963|consen 298 IVVSPDSDLYS-LV------LEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGH----- 365 (792)
T ss_pred EEEcCCCCeEE-EE------ecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCC-----
Confidence 99999999988 54 3468888887644443332 2222 456788999996555555544
Q ss_pred CCCeEEEEeCCC-ceEEEEEec--cCC------CCcEEEEEEccCCCeeEEEEccC-------CCCeEEEEEee--CCee
Q 000731 248 KCPSIVFYERNG-LERSSFDIN--EQI------DSTVELLKWNCMSDLLAAVVRFE-------EYDSVKICFFS--NNHW 309 (1325)
Q Consensus 248 ~~~~V~~~e~nG-l~~~~f~l~--~~~------~~~V~~laWSpDg~~LAs~~~d~-------~~~~VqLW~~~--n~~w 309 (1325)
.+.|.||+.-. ....++..- ... ...+.+++.+.+|..+|+.-... +...+|+|..+ ...|
T Consensus 366 -~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~ 444 (792)
T KOG1963|consen 366 -PGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTF 444 (792)
T ss_pred -CceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCccee
Confidence 46799998421 112222221 111 23578899999999999874322 12378999875 3456
Q ss_pred EEEeEEEEecCCc-EE-EEEccCCCcEEEEEecCCcEEEEEEEEeeeeCCCeeEEEEeCCEEEEeecCCc-CCCCCc---
Q 000731 310 YLKYEIRYLRRDG-IR-FMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLS-LMPPPM--- 383 (1325)
Q Consensus 310 ylkqel~~~~~~~-~~-v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDG~~l~lt~l~~~-~vPpPm--- 383 (1325)
.|.-.+.-++... .. +..+|....+....+.+|. +++|-|... ++-|--
T Consensus 445 ~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~-------------------------~KiW~~~~~~n~~k~~s~W 499 (792)
T KOG1963|consen 445 ILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGD-------------------------FKIWVFTDDSNIYKKSSNW 499 (792)
T ss_pred EEEEEEecCCCceeEEEEEecCcccceeEEeccCCe-------------------------EEEEEEecccccCcCccce
Confidence 6766666555443 22 2333332212333333343 333333110 000000
Q ss_pred eeeee--cCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCC
Q 000731 384 YLFSL--KFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAP 425 (1325)
Q Consensus 384 ~~~~l--~~~~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~~~~~ 425 (1325)
+..-+ -|..++++.+||.|| ..||++ .|++|.+|+..+.
T Consensus 500 ~c~~i~sy~k~~i~a~~fs~dG--slla~s-~~~~Itiwd~~~~ 540 (792)
T KOG1963|consen 500 TCKAIGSYHKTPITALCFSQDG--SLLAVS-FDDTITIWDYDTK 540 (792)
T ss_pred EEeeeeccccCcccchhhcCCC--cEEEEe-cCCEEEEecCCCh
Confidence 01111 156788999999999 666655 7789999999874
No 190
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.32 E-value=1.5e-10 Score=127.62 Aligned_cols=250 Identities=18% Similarity=0.301 Sum_probs=163.8
Q ss_pred CCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCc---eeeeecCCCCceeEEEEccCCCeEEEEecCCCCCCCC
Q 000731 174 SFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGT---LQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCP 250 (1325)
Q Consensus 174 ~~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~---l~~t~e~~~~~v~~lawsPdG~~IAs~~~d~~~~~~~ 250 (1325)
..|++.+|++|++.+| ++- ....|-||....+. ...++..|+..|+.|.|+|.++.|.+++.|.+
T Consensus 11 ~pitchAwn~drt~iA-v~~------~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drn----- 78 (361)
T KOG1523|consen 11 EPITCHAWNSDRTQIA-VSP------NNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRN----- 78 (361)
T ss_pred CceeeeeecCCCceEE-ecc------CCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCC-----
Confidence 4679999999999999 763 34678899873333 45677789999999999999999999998753
Q ss_pred eEEEEeC-CCce-EEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEee-CCeeEEEeEEEEecCCc-EEEE
Q 000731 251 SIVFYER-NGLE-RSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFS-NNHWYLKYEIRYLRRDG-IRFM 326 (1325)
Q Consensus 251 ~V~~~e~-nGl~-~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~-n~~wylkqel~~~~~~~-~~v~ 326 (1325)
--+|+. .|-. .....|- .....+..|.|||.+..+|+++..+ .|-+|... ...|...+.+.-+-.+. .++.
T Consensus 79 -ayVw~~~~~~~WkptlvLl-RiNrAAt~V~WsP~enkFAVgSgar---~isVcy~E~ENdWWVsKhikkPirStv~sld 153 (361)
T KOG1523|consen 79 -AYVWTQPSGGTWKPTLVLL-RINRAATCVKWSPKENKFAVGSGAR---LISVCYYEQENDWWVSKHIKKPIRSTVTSLD 153 (361)
T ss_pred -ccccccCCCCeeccceeEE-EeccceeeEeecCcCceEEeccCcc---EEEEEEEecccceehhhhhCCccccceeeee
Confidence 445775 3321 1112221 1234688999999999999999777 89999875 34564433343332333 8899
Q ss_pred EccCCCcEEEEEecCCcEEEEEEEEeeeeCCCeeEEEEeCCEEEEeecCCcCCCC--CceeeeecCCCCEEEEEEecCCC
Q 000731 327 WHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPP--PMYLFSLKFPTAVTEMAFYSKSS 404 (1325)
Q Consensus 327 Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDG~~l~lt~l~~~~vPp--Pm~~~~l~~~~~V~~VaFSpdg~ 404 (1325)
|||.+-+ |..++.|+...+ |+.- +--+|.+- .=+|. +..+|= -|..+. ...++|..|.|||+|
T Consensus 154 WhpnnVL-laaGs~D~k~rV----fSay------IK~Vdekp-ap~pW-gsk~PFG~lm~E~~-~~ggwvh~v~fs~sG- 218 (361)
T KOG1523|consen 154 WHPNNVL-LAAGSTDGKCRV----FSAY------IKGVDEKP-APTPW-GSKMPFGQLMSEAS-SSGGWVHGVLFSPSG- 218 (361)
T ss_pred ccCCcce-ecccccCcceeE----EEEe------eeccccCC-CCCCC-ccCCcHHHHHHhhc-cCCCceeeeEeCCCC-
Confidence 9998754 777777776643 2221 11112111 00000 001110 122111 347789999999999
Q ss_pred CCEEEEEECCCcEEEEeCCCCCc-cccccCCceeEeeeccccccCcEEEEEEecCCeEEEEEecC
Q 000731 405 KNCLAAILSDGCLCVVDLPAPDM-LEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHG 468 (1325)
Q Consensus 405 ~~~LAs~s~Dgti~lw~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~ 468 (1325)
+.||=.++|.++.+-+...+.. ...+ ....-..+.+.|..+..+++.+++.
T Consensus 219 -~~lawv~Hds~v~~~da~~p~~~v~~~------------~~~~lP~ls~~~ise~~vv~ag~~c 270 (361)
T KOG1523|consen 219 -NRLAWVGHDSTVSFVDAAGPSERVQSV------------ATAQLPLLSVSWISENSVVAAGYDC 270 (361)
T ss_pred -CEeeEecCCCceEEeecCCCchhccch------------hhccCCceeeEeecCCceeecCCCC
Confidence 9999999999999999876431 1010 1112367889999999988877663
No 191
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.31 E-value=5.8e-10 Score=125.14 Aligned_cols=239 Identities=15% Similarity=0.088 Sum_probs=164.0
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCc--E
Q 000731 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGL--L 99 (1325)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~V~~v~~spdg~~La~as~dG~--I 99 (1325)
.+.++.|+.|.-.|..++.++ ...+..+++.+- .+...++-.|+-+=||.. .+|+++.+.. +
T Consensus 7 ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~-------------~~~~~~~~~IvEmLFSSS--LvaiV~~~qpr~L 70 (391)
T KOG2110|consen 7 TINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKC-------------FSKDTEGVSIVEMLFSSS--LVAIVSIKQPRKL 70 (391)
T ss_pred ceeeeeeccceeEEEccCCCc-eeEEecCchHHh-------------hcccCCCeEEEEeecccc--eeEEEecCCCceE
Confidence 677788999998888889888 333333112221 111222456778877764 5666655444 7
Q ss_pred EEEeCCCCeEEEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEe-ecCceeeeeeccccCCCceeccCccccCCCCeEE
Q 000731 100 LLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMT-HDWDLLYENPLEELAEGFDVHEPELSSSFSFKSP 178 (1325)
Q Consensus 100 ~lw~~~~~~~e~vg~~~~~I~~~awSPDG~~LA~~s~dgtV~l~s-~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~ 178 (1325)
++++..-+..-+-=.....|.++.++-+ .|++.=.+ .|.+.+ ++-.++..+... .++..++..
T Consensus 71 kv~~~Kk~~~ICe~~fpt~IL~VrmNr~--RLvV~Lee-~IyIydI~~MklLhTI~t~-------------~~n~~gl~A 134 (391)
T KOG2110|consen 71 KVVHFKKKTTICEIFFPTSILAVRMNRK--RLVVCLEE-SIYIYDIKDMKLLHTIETT-------------PPNPKGLCA 134 (391)
T ss_pred EEEEcccCceEEEEecCCceEEEEEccc--eEEEEEcc-cEEEEecccceeehhhhcc-------------CCCccceEe
Confidence 8888764332222234678999999866 44444444 377765 233333222111 022346788
Q ss_pred EEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeecCCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEEEe-C
Q 000731 179 ISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYE-R 257 (1325)
Q Consensus 179 isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~~~v~~lawsPdG~~IAs~~~d~~~~~~~~V~~~e-~ 257 (1325)
++.+.++.|+|.=++ ...+.|.|||..+-+...+.+.|.+.+.+|+|+|+|.+||++++++ -.|++|. .
T Consensus 135 lS~n~~n~ylAyp~s-----~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKG-----TVIRVf~v~ 204 (391)
T KOG2110|consen 135 LSPNNANCYLAYPGS-----TTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKG-----TVIRVFSVP 204 (391)
T ss_pred eccCCCCceEEecCC-----CCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCc-----eEEEEEEcC
Confidence 888889999993333 2347899999988888888899999999999999999999999864 3677887 6
Q ss_pred CCceEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeC
Q 000731 258 NGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSN 306 (1325)
Q Consensus 258 nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~n 306 (1325)
+|.+..||. ++.-...|.+|+||||+++|++.+..+ ||.++-++.
T Consensus 205 ~G~kl~eFR-RG~~~~~IySL~Fs~ds~~L~~sS~Te---TVHiFKL~~ 249 (391)
T KOG2110|consen 205 EGQKLYEFR-RGTYPVSIYSLSFSPDSQFLAASSNTE---TVHIFKLEK 249 (391)
T ss_pred CccEeeeee-CCceeeEEEEEEECCCCCeEEEecCCC---eEEEEEecc
Confidence 888777763 222235799999999999999999888 999988764
No 192
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.31 E-value=2.3e-10 Score=129.38 Aligned_cols=273 Identities=12% Similarity=0.119 Sum_probs=164.8
Q ss_pred EEEEEeCCCcEEEEeccc-ccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEEEeCC-------
Q 000731 34 RLFFASSANNIYSAQLSS-FQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSVD------- 105 (1325)
Q Consensus 34 ~l~~~s~~~~i~~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~~~~V~~v~~spdg~~La~as~dG~I~lw~~~------- 105 (1325)
.++++..|+.|..|.++. ..+++..++. .-+.|..| ...|+.|.|+|+|+.||+|+++|+|.||-..
T Consensus 28 ~laT~G~D~~iriW~v~r~~~~~~~~~V~-y~s~Ls~H----~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~ 102 (434)
T KOG1009|consen 28 KLATAGGDKDIRIWKVNRSEPGGGDMKVE-YLSSLSRH----TRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDA 102 (434)
T ss_pred ceecccCccceeeeeeeecCCCCCceeEE-EeecccCC----cceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccc
Confidence 778888899999999851 1111112222 11223333 4689999999999999999999999999765
Q ss_pred -C-----C---e-EEEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeeeccccCCCceeccCccccCCCC
Q 000731 106 -G-----N---A-TEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSF 175 (1325)
Q Consensus 106 -~-----~---~-~e~vg~~~~~I~~~awSPDG~~LA~~s~dgtV~l~s~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~ 175 (1325)
+ . . ...++.|...|..++||||+..|++++.|+++.+|+ +-.+..+...+ +|...
T Consensus 103 d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~D----v~~G~l~~~~~-----------dh~~y 167 (434)
T KOG1009|consen 103 DTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWD----VHAGQLLAILD-----------DHEHY 167 (434)
T ss_pred cchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEE----eccceeEeecc-----------ccccc
Confidence 3 1 1 124555788899999999999999999999998764 33333322222 45556
Q ss_pred eEEEEEecCCcEEEEeeccccccCCCCEEEEEECC---------------------CCceeeeecCCCC----ceeEEEE
Q 000731 176 KSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERD---------------------SGTLQASSELKAF----MGAVLEW 230 (1325)
Q Consensus 176 i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~---------------------~G~l~~t~e~~~~----~v~~law 230 (1325)
+..++|-|-++|+++-+ .+ |..++++.. +|...+.+ |+. .-.-++|
T Consensus 168 vqgvawDpl~qyv~s~s-~d------r~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLf--hDeTlksFFrRlsf 238 (434)
T KOG1009|consen 168 VQGVAWDPLNQYVASKS-SD------RHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLF--HDETLKSFFRRLSF 238 (434)
T ss_pred cceeecchhhhhhhhhc-cC------cccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeee--ecCchhhhhhhccc
Confidence 78899999999999433 33 322222211 11111111 111 1256899
Q ss_pred ccCCCeEEEEecC--CCCC-CCCeEEEEeCCCceEEEEEeccCCCCcEEEEEEc------------------cCCCeeEE
Q 000731 231 MPSGANIAAVYDR--KSEN-KCPSIVFYERNGLERSSFDINEQIDSTVELLKWN------------------CMSDLLAA 289 (1325)
Q Consensus 231 sPdG~~IAs~~~d--~~~~-~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWS------------------pDg~~LAs 289 (1325)
+|||.++.+..+- .++. ..+..-+|.+.-+.+--+.++.+. ..+..+.++ |-+-+.|+
T Consensus 239 TPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~-k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfai 317 (434)
T KOG1009|consen 239 TPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPK-KPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAI 317 (434)
T ss_pred CCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCC-cceEEEEeeeeEEEeccccccccccccccceEEEE
Confidence 9999999876542 1111 123333455443333323333221 123333333 44557888
Q ss_pred EEccCCCCeEEEEEeeCCee-EEEeEEEEecCCcEEEEEccCCCcEEEEEecCCc
Q 000731 290 VVRFEEYDSVKICFFSNNHW-YLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQ 343 (1325)
Q Consensus 290 ~~~d~~~~~VqLW~~~n~~w-ylkqel~~~~~~~~~v~Wsp~~~~~L~~~~~~g~ 343 (1325)
++.+. |.++|+..... +.-..|.|+ ..+.++|++++.. |.+.+.||-
T Consensus 318 At~~s----vyvydtq~~~P~~~v~nihy~--~iTDiaws~dg~~-l~vSS~DGy 365 (434)
T KOG1009|consen 318 ATKNS----VYVYDTQTLEPLAVVDNIHYS--AITDIAWSDDGSV-LLVSSTDGF 365 (434)
T ss_pred eecce----EEEeccccccceEEEeeeeee--eecceeecCCCcE-EEEeccCCc
Confidence 88886 99999876322 122334442 2377899998876 555566773
No 193
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.31 E-value=8.2e-11 Score=131.67 Aligned_cols=198 Identities=12% Similarity=0.118 Sum_probs=132.3
Q ss_pred CCEEEEEEccC--CCEEEEEECCCcEEEEeCCC-----------------CeEEEeceecCcEEEEEEcCCCC-eEEEEe
Q 000731 76 DSITAFDYLME--KEALIVGTSSGLLLLHSVDG-----------------NATEVVGRVEGGVRFISPSPDGD-LLGVTT 135 (1325)
Q Consensus 76 ~~V~~v~~spd--g~~La~as~dG~I~lw~~~~-----------------~~~e~vg~~~~~I~~~awSPDG~-~LA~~s 135 (1325)
+.+.-+.-++- .-..|+=++.|.|.+|++.. ..+-.++.|.+.=.++.|||--. .|++|.
T Consensus 152 g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGD 231 (440)
T KOG0302|consen 152 GGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGD 231 (440)
T ss_pred cccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccCc
Confidence 44555544444 44555668999999999731 11224455566668999999311 255555
Q ss_pred CCccEEEEeecCceeeeeeccccCCCceeccCccccCCCCeEEEEEecCC-cEEEEeeccccccCCCCEEEEEECCCC--
Q 000731 136 GFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDG-KYFATLSEFCNSSKLHKRLKVWERDSG-- 212 (1325)
Q Consensus 136 ~dgtV~l~s~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG-~~lAtvss~d~~~~~d~~irVWd~~~G-- 212 (1325)
.-+.|.+|. +.++ .++.+ ..-|-+|...|-.+.|||.- ..|| ++|. |++|||||.+.|
T Consensus 232 c~~~I~lw~----~~~g-~W~vd-------~~Pf~gH~~SVEDLqWSptE~~vfa-ScS~------DgsIrIWDiRs~~~ 292 (440)
T KOG0302|consen 232 CVKGIHLWE----PSTG-SWKVD-------QRPFTGHTKSVEDLQWSPTEDGVFA-SCSC------DGSIRIWDIRSGPK 292 (440)
T ss_pred cccceEeee----eccC-ceeec-------CccccccccchhhhccCCccCceEE-eeec------CceEEEEEecCCCc
Confidence 556676654 3221 11111 12344677888999999965 4677 4433 589999998888
Q ss_pred -ceeeeecCCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeCCCceEE----EEEeccCCCCcEEEEEEccC-CCe
Q 000731 213 -TLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERS----SFDINEQIDSTVELLKWNCM-SDL 286 (1325)
Q Consensus 213 -~l~~t~e~~~~~v~~lawsPdG~~IAs~~~d~~~~~~~~V~~~e~nGl~~~----~f~l~~~~~~~V~~laWSpD-g~~ 286 (1325)
.++.+ ..|.+-|+.|+|+-.-.+||||+++ +++.+|+.--...+ +|+. |...|.+|.|+|. ..+
T Consensus 293 ~~~~~~-kAh~sDVNVISWnr~~~lLasG~Dd------Gt~~iwDLR~~~~~~pVA~fk~---Hk~pItsieW~p~e~s~ 362 (440)
T KOG0302|consen 293 KAAVST-KAHNSDVNVISWNRREPLLASGGDD------GTLSIWDLRQFKSGQPVATFKY---HKAPITSIEWHPHEDSV 362 (440)
T ss_pred cceeEe-eccCCceeeEEccCCcceeeecCCC------ceEEEEEhhhccCCCcceeEEe---ccCCeeEEEeccccCce
Confidence 44444 6688899999999998899999985 57999994322222 3433 4567999999984 446
Q ss_pred eEEEEccCCCCeEEEEEee
Q 000731 287 LAAVVRFEEYDSVKICFFS 305 (1325)
Q Consensus 287 LAs~~~d~~~~~VqLW~~~ 305 (1325)
+|+++.|. .|.|||++
T Consensus 363 iaasg~D~---QitiWDls 378 (440)
T KOG0302|consen 363 IAASGEDN---QITIWDLS 378 (440)
T ss_pred EEeccCCC---cEEEEEee
Confidence 66666666 79999986
No 194
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.30 E-value=1e-10 Score=131.40 Aligned_cols=228 Identities=14% Similarity=0.190 Sum_probs=158.5
Q ss_pred CCCEEEEEEcc-CCCEEEEEECCCcEEEEeCCCC---------eEEEeceecCcEEEEEEcCCC-CeEEEEeCCccEEEE
Q 000731 75 GDSITAFDYLM-EKEALIVGTSSGLLLLHSVDGN---------ATEVVGRVEGGVRFISPSPDG-DLLGVTTGFGQILVM 143 (1325)
Q Consensus 75 ~~~V~~v~~sp-dg~~La~as~dG~I~lw~~~~~---------~~e~vg~~~~~I~~~awSPDG-~~LA~~s~dgtV~l~ 143 (1325)
.+.|.+++|.| +.+.||+||+|-+|++|....+ ..++.| |...|--++|.|-- ..|+++++|++|.+|
T Consensus 81 t~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~g-H~rrVg~V~wHPtA~NVLlsag~Dn~v~iW 159 (472)
T KOG0303|consen 81 TAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYG-HQRRVGLVQWHPTAPNVLLSAGSDNTVSIW 159 (472)
T ss_pred cccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEee-cceeEEEEeecccchhhHhhccCCceEEEE
Confidence 46899999999 4578999999999999997431 124555 58899999999974 678999999999998
Q ss_pred eecCceeeeeeccccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeecCCCC
Q 000731 144 THDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAF 223 (1325)
Q Consensus 144 s~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~~ 223 (1325)
+-. ++..+-.. .|.+.|++++|+-||.+|+|++ .|++|||||..+|++.+...+|.|
T Consensus 160 nv~----tgeali~l------------~hpd~i~S~sfn~dGs~l~Ttc-------kDKkvRv~dpr~~~~v~e~~~heG 216 (472)
T KOG0303|consen 160 NVG----TGEALITL------------DHPDMVYSMSFNRDGSLLCTTC-------KDKKVRVIDPRRGTVVSEGVAHEG 216 (472)
T ss_pred ecc----CCceeeec------------CCCCeEEEEEeccCCceeeeec-------ccceeEEEcCCCCcEeeecccccC
Confidence 642 22221111 2567899999999999999432 479999999999999988766766
Q ss_pred ce-eEEEEccCCCeEEEEecCCCCCCCCeEEEEeCCCceEEEEEec-cCCCCcEEEEEEccCCCeeEEEEccCCCCeEEE
Q 000731 224 MG-AVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDIN-EQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKI 301 (1325)
Q Consensus 224 ~v-~~lawsPdG~~IAs~~~d~~~~~~~~V~~~e~nGl~~~~f~l~-~~~~~~V~~laWSpDg~~LAs~~~d~~~~~VqL 301 (1325)
.- .-+-|=-+|. |++++..+ -+...+.+|+.+.+.... .+. ....+.|.==-|.||..++-.++... +.|+-
T Consensus 217 ~k~~Raifl~~g~-i~tTGfsr--~seRq~aLwdp~nl~eP~-~~~elDtSnGvl~PFyD~dt~ivYl~GKGD--~~IRY 290 (472)
T KOG0303|consen 217 AKPARAIFLASGK-IFTTGFSR--MSERQIALWDPNNLEEPI-ALQELDTSNGVLLPFYDPDTSIVYLCGKGD--SSIRY 290 (472)
T ss_pred CCcceeEEeccCc-eeeecccc--ccccceeccCcccccCcc-eeEEeccCCceEEeeecCCCCEEEEEecCC--cceEE
Confidence 42 4466888999 77666532 235679999987654331 111 11234566667999999887766422 27999
Q ss_pred EEeeCCeeEEEeEEEEecCCc-EEEEEccCCC
Q 000731 302 CFFSNNHWYLKYEIRYLRRDG-IRFMWHPTKP 332 (1325)
Q Consensus 302 W~~~n~~wylkqel~~~~~~~-~~v~Wsp~~~ 332 (1325)
+.+.|-.-|+-.--.|...++ ..+.+-|..+
T Consensus 291 yEit~d~P~~hyln~f~S~epQRG~g~mPKRG 322 (472)
T KOG0303|consen 291 FEITNEPPFVHYLNTFSSKEPQRGMGFMPKRG 322 (472)
T ss_pred EEecCCCceeEEecccccCCcccccccccccc
Confidence 999876544432223433333 4455555443
No 195
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.29 E-value=5.1e-10 Score=136.22 Aligned_cols=210 Identities=10% Similarity=0.047 Sum_probs=118.7
Q ss_pred CcEEEEeCCCCeEEEeceecCcEEEEEEcCCCCeEEE--EeC-Ccc--EEEEeecCceeeeeeccccCCCceeccCcccc
Q 000731 97 GLLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGV--TTG-FGQ--ILVMTHDWDLLYENPLEELAEGFDVHEPELSS 171 (1325)
Q Consensus 97 G~I~lw~~~~~~~e~vg~~~~~I~~~awSPDG~~LA~--~s~-dgt--V~l~s~~~d~~~e~~l~~~~~~~~Vs~tqf~~ 171 (1325)
+.|.+.|.+++....+......+.+.+|||||+.++. .+. +|. |.+++.... ....+. .|.
T Consensus 165 ~~l~~~d~dG~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g--~~~~lt-----------~~~- 230 (428)
T PRK01029 165 GELWSVDYDGQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENP--AGKKIL-----------ALQ- 230 (428)
T ss_pred ceEEEEcCCCCCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCC--CceEee-----------cCC-
Confidence 3577778887654433333455778999999987443 443 333 433332211 111111 111
Q ss_pred CCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCC---CceeeeecCCCCceeEEEEccCCCeEEEEecCCCCCC
Q 000731 172 SFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDS---GTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENK 248 (1325)
Q Consensus 172 ~~~~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~---G~l~~t~e~~~~~v~~lawsPdG~~IAs~~~d~~~~~ 248 (1325)
+.....+|||||+.||.++...+ ..+-.+.+|+... |..........+.....+|||||+.||.+++..+
T Consensus 231 --g~~~~p~wSPDG~~Laf~s~~~g--~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g--- 303 (428)
T PRK01029 231 --GNQLMPTFSPRKKLLAFISDRYG--NPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDG--- 303 (428)
T ss_pred --CCccceEECCCCCEEEEEECCCC--CcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCC---
Confidence 22356899999999995543221 1233455577644 3444444333344567899999999998875321
Q ss_pred CCeEEEEeCCC--ceEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeEEEeEEEEecCCcEEEE
Q 000731 249 CPSIVFYERNG--LERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFM 326 (1325)
Q Consensus 249 ~~~V~~~e~nG--l~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~n~~wylkqel~~~~~~~~~v~ 326 (1325)
...|.+++.++ .... .+.. ....+...+|||||+.||....+.+...|.+|+..+... ..+...........
T Consensus 304 ~~~ly~~~~~~~g~~~~--~lt~-~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~---~~Lt~~~~~~~~p~ 377 (428)
T PRK01029 304 RPRIYIMQIDPEGQSPR--LLTK-KYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRD---YQLTTSPENKESPS 377 (428)
T ss_pred CceEEEEECcccccceE--Eecc-CCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCe---EEccCCCCCccceE
Confidence 23454444432 1111 1221 123567899999999999887654344699999876543 12221111225678
Q ss_pred EccCCCc
Q 000731 327 WHPTKPL 333 (1325)
Q Consensus 327 Wsp~~~~ 333 (1325)
|+|++..
T Consensus 378 wSpDG~~ 384 (428)
T PRK01029 378 WAIDSLH 384 (428)
T ss_pred ECCCCCE
Confidence 9998765
No 196
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.29 E-value=3.4e-11 Score=137.11 Aligned_cols=198 Identities=17% Similarity=0.101 Sum_probs=131.4
Q ss_pred EEEEEccCCCEEEEEECCCcEEEEeC-CCCeEEEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeeeccc
Q 000731 79 TAFDYLMEKEALIVGTSSGLLLLHSV-DGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEE 157 (1325)
Q Consensus 79 ~~v~~spdg~~La~as~dG~I~lw~~-~~~~~e~vg~~~~~I~~~awSPDG~~LA~~s~dgtV~l~s~~~d~~~e~~l~~ 157 (1325)
..|+|++||..|++++.||++++|+. +-..+...-.|.+.|.++.|||||+.||+.|.| ...+|+. ..+.++..
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~----~~g~~~a~ 222 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSV----NTGAALAR 222 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEe----ccCchhhh
Confidence 78999999999999999999999994 433332333457889999999999999999999 7888753 22222222
Q ss_pred cC-CCceeccCccccCCCCeEEEEEecCC---c-EEEEeeccccccCCCCEEEEEECCCCceeeeecC--CCCceeEEEE
Q 000731 158 LA-EGFDVHEPELSSSFSFKSPISWRGDG---K-YFATLSEFCNSSKLHKRLKVWERDSGTLQASSEL--KAFMGAVLEW 230 (1325)
Q Consensus 158 ~~-~~~~Vs~tqf~~~~~~i~~isWspDG---~-~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~--~~~~v~~law 230 (1325)
.. . ..+-....+.|+-|+ . ++|++- ..........+.+|+. + ..+..... ....+.+++-
T Consensus 223 ~t~~----------~k~~~~~~cRF~~d~~~~~l~laa~~-~~~~~v~~~~~~~w~~-~-~~l~~~~~~~~~~siSsl~V 289 (398)
T KOG0771|consen 223 KTPF----------SKDEMFSSCRFSVDNAQETLRLAASQ-FPGGGVRLCDISLWSG-S-NFLRLRKKIKRFKSISSLAV 289 (398)
T ss_pred cCCc----------ccchhhhhceecccCCCceEEEEEec-CCCCceeEEEeeeecc-c-cccchhhhhhccCcceeEEE
Confidence 11 0 111234567777777 2 334132 1110011123455666 3 33333222 2234799999
Q ss_pred ccCCCeEEEEecCCCCCCCCeEEEEeCCCceEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEe
Q 000731 231 MPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFF 304 (1325)
Q Consensus 231 sPdG~~IAs~~~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~ 304 (1325)
|+||+++|.|+-+ +.|.+++..-++.-++ .+.-|...|..|.|+||++.+++.+.+. ...+-.+
T Consensus 290 S~dGkf~AlGT~d------GsVai~~~~~lq~~~~-vk~aH~~~VT~ltF~Pdsr~~~svSs~~---~~~v~~l 353 (398)
T KOG0771|consen 290 SDDGKFLALGTMD------GSVAIYDAKSLQRLQY-VKEAHLGFVTGLTFSPDSRYLASVSSDN---EAAVTKL 353 (398)
T ss_pred cCCCcEEEEeccC------CcEEEEEeceeeeeEe-ehhhheeeeeeEEEcCCcCcccccccCC---ceeEEEE
Confidence 9999999999985 5799998766655544 3333456899999999999999988776 4555443
No 197
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.28 E-value=1.8e-10 Score=141.00 Aligned_cols=219 Identities=13% Similarity=0.106 Sum_probs=137.3
Q ss_pred ceeEEeeecCCCEEEEEeCC---CcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEE-ECCC
Q 000731 22 ILQFSALDIEQNRLFFASSA---NNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVG-TSSG 97 (1325)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~---~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~V~~v~~spdg~~La~a-s~dG 97 (1325)
.+...+|.+|+..|++++.+ ..|+.||+ .+++. ..+ ... .+...+..|||||+.|+.+ +.+|
T Consensus 219 ~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl--~tg~~-~~l-------t~~----~g~~~~~~wSPDG~~La~~~~~~g 284 (448)
T PRK04792 219 PLMSPAWSPDGRKLAYVSFENRKAEIFVQDI--YTQVR-EKV-------TSF----PGINGAPRFSPDGKKLALVLSKDG 284 (448)
T ss_pred cccCceECCCCCEEEEEEecCCCcEEEEEEC--CCCCe-EEe-------cCC----CCCcCCeeECCCCCEEEEEEeCCC
Confidence 45678999999999888653 36999998 44442 111 111 1233468999999988764 5667
Q ss_pred c--EEEEeCCCCeEEEeceecCcEEEEEEcCCCCeEEEEeC-CccEEEE--eecCceeeeeeccccCCCceeccCccccC
Q 000731 98 L--LLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTG-FGQILVM--THDWDLLYENPLEELAEGFDVHEPELSSS 172 (1325)
Q Consensus 98 ~--I~lw~~~~~~~e~vg~~~~~I~~~awSPDG~~LA~~s~-dgtV~l~--s~~~d~~~e~~l~~~~~~~~Vs~tqf~~~ 172 (1325)
. |.+||+++++...+..+...+...+|||||+.|+..+. ++...+| +....... .+. |.+.
T Consensus 285 ~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~--~Lt------------~~g~ 350 (448)
T PRK04792 285 QPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVS--RLT------------FEGE 350 (448)
T ss_pred CeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEE--EEe------------cCCC
Confidence 5 77789888877644444455678999999999998874 3443333 32111111 111 1111
Q ss_pred CCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeecCCCCceeEEEEccCCCeEEEEecCCCCCCCCeE
Q 000731 173 FSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSI 252 (1325)
Q Consensus 173 ~~~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~~~v~~lawsPdG~~IAs~~~d~~~~~~~~V 252 (1325)
.....+|+|||++++.++ .. .+...|.++|..+|+....... ......+|+|||+.|+.++.+.. ...+
T Consensus 351 --~~~~~~~SpDG~~l~~~~-~~---~g~~~I~~~dl~~g~~~~lt~~--~~d~~ps~spdG~~I~~~~~~~g---~~~l 419 (448)
T PRK04792 351 --QNLGGSITPDGRSMIMVN-RT---NGKFNIARQDLETGAMQVLTST--RLDESPSVAPNGTMVIYSTTYQG---KQVL 419 (448)
T ss_pred --CCcCeeECCCCCEEEEEE-ec---CCceEEEEEECCCCCeEEccCC--CCCCCceECCCCCEEEEEEecCC---ceEE
Confidence 124579999999998443 22 1234566788877776543332 22345689999999988776432 3457
Q ss_pred EEEeCCCceEEEEEeccCCCCcEEEEEEcc
Q 000731 253 VFYERNGLERSSFDINEQIDSTVELLKWNC 282 (1325)
Q Consensus 253 ~~~e~nGl~~~~f~l~~~~~~~V~~laWSp 282 (1325)
.+++.+|..... ++.+ .+.+...+|||
T Consensus 420 ~~~~~~G~~~~~--l~~~-~g~~~~p~Wsp 446 (448)
T PRK04792 420 AAVSIDGRFKAR--LPAG-QGEVKSPAWSP 446 (448)
T ss_pred EEEECCCCceEE--CcCC-CCCcCCCccCC
Confidence 778888865443 3322 34577889998
No 198
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.28 E-value=2.6e-10 Score=127.68 Aligned_cols=269 Identities=21% Similarity=0.270 Sum_probs=167.9
Q ss_pred ecCcEEEEEEcCCC--CeEEEEeCCccEEEEeecCceeeeee---ccccC-CCceeccCccccCCCCeEEEEEec--CCc
Q 000731 115 VEGGVRFISPSPDG--DLLGVTTGFGQILVMTHDWDLLYENP---LEELA-EGFDVHEPELSSSFSFKSPISWRG--DGK 186 (1325)
Q Consensus 115 ~~~~I~~~awSPDG--~~LA~~s~dgtV~l~s~~~d~~~e~~---l~~~~-~~~~Vs~tqf~~~~~~i~~isWsp--DG~ 186 (1325)
|.++|+.+.-+|-| -+.|+=+..|.|.||+.. ..+.... +.... ...+| -.|.+|.+.-..+.||| .|.
T Consensus 150 h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~-~~l~~l~~~~~~~~~s~~~Pl--~t~~ghk~EGy~LdWSp~~~g~ 226 (440)
T KOG0302|consen 150 HYGGINRVRVSRLGNEVLCASWSENGRVQVWDLA-PHLNALSEPGLEVKDSEFRPL--FTFNGHKGEGYGLDWSPIKTGR 226 (440)
T ss_pred cccccceeeecccCCcceeeeecccCcEEEEEch-hhhhhhcCccccccccccCce--EEecccCccceeeecccccccc
Confidence 46778877777765 455555788999998632 1111110 00000 11111 12446666678999999 443
Q ss_pred EEEEeeccccccCCCCEEEEEECCCCceeee---ecCCCCceeEEEEccCC-CeEEEEecCCCCCCCCeEEEEe-CCCce
Q 000731 187 YFATLSEFCNSSKLHKRLKVWERDSGTLQAS---SELKAFMGAVLEWMPSG-ANIAAVYDRKSENKCPSIVFYE-RNGLE 261 (1325)
Q Consensus 187 ~lAtvss~d~~~~~d~~irVWd~~~G~l~~t---~e~~~~~v~~lawsPdG-~~IAs~~~d~~~~~~~~V~~~e-~nGl~ 261 (1325)
. + ++ .-.+.|++|.+.+|.-... +.+|...|..|.|||.- ..+|||+.| +.|++|| |+|..
T Consensus 227 L-l-sG------Dc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~D------gsIrIWDiRs~~~ 292 (440)
T KOG0302|consen 227 L-L-SG------DCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCD------GSIRIWDIRSGPK 292 (440)
T ss_pred c-c-cC------ccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecC------ceEEEEEecCCCc
Confidence 2 2 22 1136799999977754332 44588889999999975 578999986 5799999 66644
Q ss_pred EEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeE-EEeEEEEecCCcEEEEEccCCCcEEEEEec
Q 000731 262 RSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWY-LKYEIRYLRRDGIRFMWHPTKPLQLICWTL 340 (1325)
Q Consensus 262 ~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~n~~wy-lkqel~~~~~~~~~v~Wsp~~~~~L~~~~~ 340 (1325)
....... .+...|+-|+||-+-.+||+|+.|| +++|||+.+..-- -..++.+|..-.+++.|||.....+++...
T Consensus 293 ~~~~~~k-Ah~sDVNVISWnr~~~lLasG~DdG---t~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~ 368 (440)
T KOG0302|consen 293 KAAVSTK-AHNSDVNVISWNRREPLLASGGDDG---TLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGE 368 (440)
T ss_pred cceeEee-ccCCceeeEEccCCcceeeecCCCc---eEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccC
Confidence 3322222 3356799999999999999999999 9999999874321 012455554444999999988888888888
Q ss_pred CCcEEEEEEEEeee--eCCCee-EEEEeCCEEEEeecCCcCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcE
Q 000731 341 DGQITTYNFIWTTA--VMENST-ALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCL 417 (1325)
Q Consensus 341 ~g~~~~~~~~~~~~--~~d~~~-v~viDG~~l~lt~l~~~~vPpPm~~~~l~~~~~V~~VaFSpdg~~~~LAs~s~Dgti 417 (1325)
|.++. .|+.+ .++... .-...| ...+||-+ .+.-+-+.-|..|.|++.-. .+|++.+.|| +
T Consensus 369 D~Qit----iWDlsvE~D~ee~~~~a~~~---------L~dlPpQL-LFVHqGQke~KevhWH~QiP-G~lvsTa~dG-f 432 (440)
T KOG0302|consen 369 DNQIT----IWDLSVEADEEEIDQEAAEG---------LQDLPPQL-LFVHQGQKEVKEVHWHRQIP-GLLVSTAIDG-F 432 (440)
T ss_pred CCcEE----EEEeeccCChhhhccccccc---------hhcCCcee-EEEecchhHhhhheeccCCC-CeEEEecccc-e
Confidence 88876 45554 221110 011111 12455532 22222344588999999863 4677776776 3
Q ss_pred EEE
Q 000731 418 CVV 420 (1325)
Q Consensus 418 ~lw 420 (1325)
.+|
T Consensus 433 nVf 435 (440)
T KOG0302|consen 433 NVF 435 (440)
T ss_pred eEE
Confidence 444
No 199
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.27 E-value=1.5e-10 Score=125.65 Aligned_cols=292 Identities=16% Similarity=0.183 Sum_probs=168.4
Q ss_pred CCcEEEEeCCC--CeE--EEeceecCcEEEEEEcCC-CCeEEEEeCC---c----cEEEEeecCceeeeeeccccCCCce
Q 000731 96 SGLLLLHSVDG--NAT--EVVGRVEGGVRFISPSPD-GDLLGVTTGF---G----QILVMTHDWDLLYENPLEELAEGFD 163 (1325)
Q Consensus 96 dG~I~lw~~~~--~~~--e~vg~~~~~I~~~awSPD-G~~LA~~s~d---g----tV~l~s~~~d~~~e~~l~~~~~~~~ 163 (1325)
|..|.+...+. +.+ +.+-++.+.|+.++=||- ..+||++..+ . .+-+|+.- ++.....-.+.. .
T Consensus 39 dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ip-e~~~~S~~~tlE---~ 114 (370)
T KOG1007|consen 39 DNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIP-EPLGQSNSSTLE---C 114 (370)
T ss_pred cceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecc-cccCccccchhh---H
Confidence 44555544432 222 345567788999999994 5667777542 2 13344321 111100000000 0
Q ss_pred ec--cCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCcee-ee---e--cCCCCceeEEEEcc--C
Q 000731 164 VH--EPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQ-AS---S--ELKAFMGAVLEWMP--S 233 (1325)
Q Consensus 164 Vs--~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~-~t---~--e~~~~~v~~lawsP--d 233 (1325)
|. .| .+-+.+.+|-|-|++.-+|++. +..|.+|+++++..+ .. + ..+...-.+-+||| |
T Consensus 115 v~~Ldt---eavg~i~cvew~Pns~klasm~--------dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHd 183 (370)
T KOG1007|consen 115 VASLDT---EAVGKINCVEWEPNSDKLASMD--------DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHD 183 (370)
T ss_pred hhcCCH---HHhCceeeEEEcCCCCeeEEec--------cCceEEEEcccCcchheeecccccccccceecccccCCCCc
Confidence 00 00 1114789999999999998332 578999999877652 21 1 11233346789999 8
Q ss_pred CCeEEEEecCCCCCCCCeEEEEeCCCceEEEEEeccCCCCcEEEEEEccCCC-eeEEEEccCCCCeEEEEEeeCCeeEEE
Q 000731 234 GANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSD-LLAAVVRFEEYDSVKICFFSNNHWYLK 312 (1325)
Q Consensus 234 G~~IAs~~~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~-~LAs~~~d~~~~~VqLW~~~n~~wylk 312 (1325)
|+.+|++++ .++.+||.- ..+..+.++..+...|.++.|||+-+ +||+++.|+ .|+|||+.+-.. --
T Consensus 184 gnqv~tt~d-------~tl~~~D~R-T~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdg---yvriWD~R~tk~-pv 251 (370)
T KOG1007|consen 184 GNQVATTSD-------STLQFWDLR-TMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDG---YVRIWDTRKTKF-PV 251 (370)
T ss_pred cceEEEeCC-------CcEEEEEcc-chhhhcchhhhhcceeeeccCCCCceEEEEEcCCCc---cEEEEeccCCCc-cc
Confidence 999999886 579999943 22233445433345799999999988 578888888 899999976432 12
Q ss_pred eEEEEecCCcEEEEEccCCCcEEEEEecCCcEEEEEEEEeeeeCCCeeEEEEeC-------CEEEEeecCCcCCCCCcee
Q 000731 313 YEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDG-------SKILVTPLSLSLMPPPMYL 385 (1325)
Q Consensus 313 qel~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDG-------~~l~lt~l~~~~vPpPm~~ 385 (1325)
+++..|..-.+.|.|+|...+.+..+..|-.+.. ...-+++ +...+..--|. ..-++-||.... .
T Consensus 252 ~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~L-sca~svS-SE~qi~~~~dese~e~~dseer~kpL~dg~------l 323 (370)
T KOG1007|consen 252 QELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNL-SCASSVS-SEQQIEFEDDESESEDEDSEERVKPLQDGQ------L 323 (370)
T ss_pred cccCCCceEEEEEEecCccceEEEecCCCceeEE-Eeccccc-cccccccccccccCcchhhHHhcccccccc------c
Confidence 3444433334889999998874444443433321 1111111 11111110010 011111222221 1
Q ss_pred eee-cCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCC
Q 000731 386 FSL-KFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLP 423 (1325)
Q Consensus 386 ~~l-~~~~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~~~ 423 (1325)
.++ +|.+.|.+++||.-.. =++|+++.||.+.|=+++
T Consensus 324 ~tydehEDSVY~~aWSsadP-WiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 324 ETYDEHEDSVYALAWSSADP-WIFASLSYDGRVIISSVP 361 (370)
T ss_pred ccccccccceEEEeeccCCC-eeEEEeccCceEEeecCC
Confidence 233 5899999999987542 689999999999987765
No 200
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.25 E-value=1.1e-09 Score=132.79 Aligned_cols=206 Identities=17% Similarity=0.134 Sum_probs=128.6
Q ss_pred cEEEEeCCCCeEEEeceecCcEEEEEEcCCCCeEEEEeCC---ccEEEEeecCceeeeeeccccCCCceeccCccccCCC
Q 000731 98 LLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGF---GQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFS 174 (1325)
Q Consensus 98 ~I~lw~~~~~~~e~vg~~~~~I~~~awSPDG~~LA~~s~d---gtV~l~s~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~ 174 (1325)
.|.++|.++.....+-.+...+.+.+|||||+.||.++.+ .+|.+|+..-... ..+. .+..
T Consensus 171 ~l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~--~~~~--------------~~~~ 234 (417)
T TIGR02800 171 ELQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQR--EKVA--------------SFPG 234 (417)
T ss_pred eEEEEcCCCCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCE--EEee--------------cCCC
Confidence 5778888765544333335568999999999999998743 3676664321100 1111 1112
Q ss_pred CeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeecCCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEE
Q 000731 175 FKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVF 254 (1325)
Q Consensus 175 ~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~~~v~~lawsPdG~~IAs~~~d~~~~~~~~V~~ 254 (1325)
....++|+|||+.|+.+.+. .+...|.+||..+|...... .+.+.....+|+|||+.|+.++.... ...|..
T Consensus 235 ~~~~~~~spDg~~l~~~~~~----~~~~~i~~~d~~~~~~~~l~-~~~~~~~~~~~s~dg~~l~~~s~~~g---~~~iy~ 306 (417)
T TIGR02800 235 MNGAPAFSPDGSKLAVSLSK----DGNPDIYVMDLDGKQLTRLT-NGPGIDTEPSWSPDGKSIAFTSDRGG---SPQIYM 306 (417)
T ss_pred CccceEECCCCCEEEEEECC----CCCccEEEEECCCCCEEECC-CCCCCCCCEEECCCCCEEEEEECCCC---CceEEE
Confidence 34678999999988733322 23467999999667654433 24444567899999999988776432 346777
Q ss_pred EeCCCceEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeEEEeEEEEecCCcEEEEEccCCCcE
Q 000731 255 YERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQ 334 (1325)
Q Consensus 255 ~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~n~~wylkqel~~~~~~~~~v~Wsp~~~~~ 334 (1325)
++.++.....+.. ....+..++|||||+.|+....+.+...|.+|+..+..+ +.+.- ........|+|++...
T Consensus 307 ~d~~~~~~~~l~~---~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~---~~l~~-~~~~~~p~~spdg~~l 379 (417)
T TIGR02800 307 MDADGGEVRRLTF---RGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE---RVLTD-TGLDESPSFAPNGRMI 379 (417)
T ss_pred EECCCCCEEEeec---CCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe---EEccC-CCCCCCceECCCCCEE
Confidence 7765533222211 123467889999999999988765444688888776432 11211 1111345799988753
No 201
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.24 E-value=7.1e-10 Score=126.78 Aligned_cols=297 Identities=11% Similarity=0.081 Sum_probs=177.4
Q ss_pred CcCceeccccccccccccccc-----ceeEEeeecCCCEEEEE-eCCC----cEEEEecccccccccceeeccccccccc
Q 000731 1 MNNLKLCAEVPLNLELQSKDE-----ILQFSALDIEQNRLFFA-SSAN----NIYSAQLSSFQNERASIKTAISAEIEHI 70 (1325)
Q Consensus 1 MrNL~~~~~~~~~~~~~~~~~-----~~~~~~~d~~~~~l~~~-s~~~----~i~~~~~~~~~~~~~~~~~~l~~~l~~~ 70 (1325)
|+|+........-|=+..+.+ ....+.+-+..+.|+++ .++. .+|.++.. +..+ ..-|
T Consensus 101 ~~g~~~y~sne~DPYvt~~d~e~deee~de~~V~psDnlIl~ar~eddvs~LEvYVyn~~----e~nl--------YvHH 168 (463)
T KOG0270|consen 101 LLGIAVYPSNEKDPYVTIPDDEDDEEEKDEEQVKPSDNLILCARNEDDVSYLEVYVYNEE----EENL--------YVHH 168 (463)
T ss_pred ccCceeccCCCCCCccccCCcccchhhcccceeccCCcEEEEeeccCCceEEEEEEEcCC----Ccce--------eEec
Confidence 456555544444332222211 23345566656666666 2322 24444441 1111 2234
Q ss_pred cCCCCCCEEEEEEccC-------CCEEEEEECCCcEEEEeCCCC-e---EEEec------------------eecCcEEE
Q 000731 71 DLEPGDSITAFDYLME-------KEALIVGTSSGLLLLHSVDGN-A---TEVVG------------------RVEGGVRF 121 (1325)
Q Consensus 71 ~~~~~~~V~~v~~spd-------g~~La~as~dG~I~lw~~~~~-~---~e~vg------------------~~~~~I~~ 121 (1325)
+++-...+.+++|+-- |+++|+|+-+-.|.|||++-. . +-.+| +|.+.|.+
T Consensus 169 D~ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~ 248 (463)
T KOG0270|consen 169 DFILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLA 248 (463)
T ss_pred ceeccCcchhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHH
Confidence 4444456777777543 579999999999999998621 1 11233 46788889
Q ss_pred EEEcCC-CCeEEEEeCCccEEEEeecCceeeeeeccccCCCceeccCccccCCCCeEEEEEecCC-cEEEEeeccccccC
Q 000731 122 ISPSPD-GDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDG-KYFATLSEFCNSSK 199 (1325)
Q Consensus 122 ~awSPD-G~~LA~~s~dgtV~l~s~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG-~~lAtvss~d~~~~ 199 (1325)
++|+-. -..||+||.|.||++|+- -.+.+-.... .|.+.|.++.|.|.- ++|. +|+.
T Consensus 249 Ls~n~~~~nVLaSgsaD~TV~lWD~----~~g~p~~s~~-----------~~~k~Vq~l~wh~~~p~~LL-sGs~----- 307 (463)
T KOG0270|consen 249 LSWNRNFRNVLASGSADKTVKLWDV----DTGKPKSSIT-----------HHGKKVQTLEWHPYEPSVLL-SGSY----- 307 (463)
T ss_pred HHhccccceeEEecCCCceEEEEEc----CCCCcceehh-----------hcCCceeEEEecCCCceEEE-eccc-----
Confidence 999876 467999999999999753 2333222211 244567999999975 5666 5544
Q ss_pred CCCEEEEEECCCCceeeeecCCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeCCCceEEEEEeccCCCCcEEEEE
Q 000731 200 LHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLK 279 (1325)
Q Consensus 200 ~d~~irVWd~~~G~l~~t~e~~~~~v~~lawsPdG~~IAs~~~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~la 279 (1325)
|++|++.|.+.-......=..++-|..++|.|.......++-+ +++|+-||.-....-.|++..| ++.|..|+
T Consensus 308 -D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~td-----dG~v~~~D~R~~~~~vwt~~AH-d~~ISgl~ 380 (463)
T KOG0270|consen 308 -DGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTD-----DGTVYYFDIRNPGKPVWTLKAH-DDEISGLS 380 (463)
T ss_pred -cceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEecC-----CceEEeeecCCCCCceeEEEec-cCCcceEE
Confidence 5899999975311111111256778999999988776666544 4689989832221334566554 56899999
Q ss_pred EccCCC-eeEEEEccCCCCeEEEEEeeCCeeEEEeEEEEecCCcEEEEEccCCCcEEEEEec
Q 000731 280 WNCMSD-LLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTL 340 (1325)
Q Consensus 280 WSpDg~-~LAs~~~d~~~~~VqLW~~~n~~wylkqel~~~~~~~~~v~Wsp~~~~~L~~~~~ 340 (1325)
+|+.-. +|++++.|+ +|+||++..-.-....+-.+.-.-..+++..|+.+..++++..
T Consensus 381 ~n~~~p~~l~t~s~d~---~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~ 439 (463)
T KOG0270|consen 381 VNIQTPGLLSTASTDK---VVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGE 439 (463)
T ss_pred ecCCCCcceeeccccc---eEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCc
Confidence 998654 688888888 9999998753221111111100001445666666665555443
No 202
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.23 E-value=4.4e-11 Score=139.81 Aligned_cols=164 Identities=19% Similarity=0.231 Sum_probs=121.1
Q ss_pred ceeEEeeec-CCCEEEEEeCCCcEEEEecccccccccceeeccccc-cccccCCCCCCEEEEEEccC-CCEEEEEECCCc
Q 000731 22 ILQFSALDI-EQNRLFFASSANNIYSAQLSSFQNERASIKTAISAE-IEHIDLEPGDSITAFDYLME-KEALIVGTSSGL 98 (1325)
Q Consensus 22 ~~~~~~~d~-~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~-l~~~~~~~~~~V~~v~~spd-g~~La~as~dG~ 98 (1325)
.+..+.||+ |...|.++++|++|..|.+ ..+... ....-|+. |..| +++|.++.|+|- ...|++++.|-|
T Consensus 629 ~vtDl~WdPFD~~rLAVa~ddg~i~lWr~--~a~gl~-e~~~tPe~~lt~h----~eKI~slRfHPLAadvLa~asyd~T 701 (1012)
T KOG1445|consen 629 LVTDLHWDPFDDERLAVATDDGQINLWRL--TANGLP-ENEMTPEKILTIH----GEKITSLRFHPLAADVLAVASYDST 701 (1012)
T ss_pred eeeecccCCCChHHeeecccCceEEEEEe--ccCCCC-cccCCcceeeecc----cceEEEEEecchhhhHhhhhhccce
Confidence 678889995 6788999999999999999 343321 11222222 3333 579999999995 478999999999
Q ss_pred EEEEeCCCCe--EEEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCcee-eeeeccccCCCceeccCccccCCCC
Q 000731 99 LLLHSVDGNA--TEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLL-YENPLEELAEGFDVHEPELSSSFSF 175 (1325)
Q Consensus 99 I~lw~~~~~~--~e~vg~~~~~I~~~awSPDG~~LA~~s~dgtV~l~s~~~d~~-~e~~l~~~~~~~~Vs~tqf~~~~~~ 175 (1325)
|+|||+.+.+ +..+| |.+.|..++|||||+.+|+++.||+|.+.. +. .+.++.... .+| ..+
T Consensus 702 i~lWDl~~~~~~~~l~g-HtdqIf~~AWSpdGr~~AtVcKDg~~rVy~----Prs~e~pv~Eg~--gpv--------gtR 766 (1012)
T KOG1445|consen 702 IELWDLANAKLYSRLVG-HTDQIFGIAWSPDGRRIATVCKDGTLRVYE----PRSREQPVYEGK--GPV--------GTR 766 (1012)
T ss_pred eeeeehhhhhhhheecc-CcCceeEEEECCCCcceeeeecCceEEEeC----CCCCCCccccCC--CCc--------cCc
Confidence 9999998865 45777 589999999999999999999999998864 22 122222111 112 123
Q ss_pred eEEEEEecCCcEEEEeeccccccCCCCEEEEEECC
Q 000731 176 KSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERD 210 (1325)
Q Consensus 176 i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~ 210 (1325)
-..|.|-=||.+++ +.+.|. ...|+|.+||.+
T Consensus 767 gARi~wacdgr~vi-v~Gfdk--~SeRQv~~Y~Aq 798 (1012)
T KOG1445|consen 767 GARILWACDGRIVI-VVGFDK--SSERQVQMYDAQ 798 (1012)
T ss_pred ceeEEEEecCcEEE-Eecccc--cchhhhhhhhhh
Confidence 46899999999999 776665 356899999985
No 203
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.23 E-value=9e-10 Score=121.73 Aligned_cols=312 Identities=13% Similarity=0.067 Sum_probs=183.3
Q ss_pred eecCcEEEEEEcC-----CCCeEEEEeCCccEEEEeecCceeeeee-ccccCCCceeccCccccCCCCeEEEEEecCCc-
Q 000731 114 RVEGGVRFISPSP-----DGDLLGVTTGFGQILVMTHDWDLLYENP-LEELAEGFDVHEPELSSSFSFKSPISWRGDGK- 186 (1325)
Q Consensus 114 ~~~~~I~~~awSP-----DG~~LA~~s~dgtV~l~s~~~d~~~e~~-l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~- 186 (1325)
.|...|..++|++ +-+.+|+++++ .+.+..-..|. +.. ++...+. .++.....++|+-|-.
T Consensus 36 d~~~~I~gv~fN~~~~~~e~~vfatvG~~-rvtiy~c~~d~--~ir~lq~y~D~---------d~~Esfytcsw~yd~~~ 103 (385)
T KOG1034|consen 36 DHNKPIFGVAFNSFLGCDEPQVFATVGGN-RVTIYECPGDG--GIRLLQSYADE---------DHDESFYTCSWSYDSNT 103 (385)
T ss_pred cCCCccceeeeehhcCCCCCceEEEeCCc-EEEEEEECCcc--ceeeeeeccCC---------CCCcceEEEEEEecCCC
Confidence 3456788888873 23456666554 67666543332 111 1111000 2445668999987754
Q ss_pred ---EEEEeeccccccCCCCEEEEEECCCCceeeeecCCCCceeEEEEccCC-CeEEEEecCCCCCCCCeEEEEeCC-Cce
Q 000731 187 ---YFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSG-ANIAAVYDRKSENKCPSIVFYERN-GLE 261 (1325)
Q Consensus 187 ---~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~~~v~~lawsPdG-~~IAs~~~d~~~~~~~~V~~~e~n-Gl~ 261 (1325)
++| +++ -.|.|||.|...+++.....+|.+.++.|-+.|+- ++|.|++.| +.|++|+.. +.-
T Consensus 104 ~~p~la-~~G------~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD------~svRlwnI~~~~C 170 (385)
T KOG1034|consen 104 GNPFLA-AGG------YLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKD------HSVRLWNIQTDVC 170 (385)
T ss_pred CCeeEE-eec------ceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCC------ceEEEEeccCCeE
Confidence 666 553 35899999999999999999999999999999986 688899885 679999943 222
Q ss_pred EEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeC--CeeEEEeEEEEecCCcEEEEEccCCCcE-----
Q 000731 262 RSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSN--NHWYLKYEIRYLRRDGIRFMWHPTKPLQ----- 334 (1325)
Q Consensus 262 ~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~n--~~wylkqel~~~~~~~~~v~Wsp~~~~~----- 334 (1325)
.-.|---+.|.+.|.++.||+||..+|+++-|. ++++|+++. .+-++. .+.-|+|++..+
T Consensus 171 v~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDh---slk~W~l~~~~f~~~lE----------~s~~~~~~~t~~pfpt~ 237 (385)
T KOG1034|consen 171 VAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDH---SLKLWRLNVKEFKNKLE----------LSITYSPNKTTRPFPTP 237 (385)
T ss_pred EEEecccccccCcEEEEEEcCCCCeeeccCCcc---eEEEEecChhHHhhhhh----------hhcccCCCCccCcCCcc
Confidence 111111123457899999999999999999998 999999983 221221 224455554320
Q ss_pred ---EEEE-ecCCcEEEEEEEEeeeeCCCeeEEEEeCCEEEEeec-CC----cCCCCCceeeee----cC-CCCEEEEEEe
Q 000731 335 ---LICW-TLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPL-SL----SLMPPPMYLFSL----KF-PTAVTEMAFY 400 (1325)
Q Consensus 335 ---L~~~-~~~g~~~~~~~~~~~~~~d~~~v~viDG~~l~lt~l-~~----~~vPpPm~~~~l----~~-~~~V~~VaFS 400 (1325)
+-.. +.+ .+.+.+--+-+-+.-++.-.-++.|..|-. .. -++-||-+.-++ .. ...||-|-|+
T Consensus 238 ~~~fp~fst~d---iHrnyVDCvrw~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~ 314 (385)
T KOG1034|consen 238 KTHFPDFSTTD---IHRNYVDCVRWFGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFA 314 (385)
T ss_pred ccccccccccc---cccchHHHHHHHhhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEe
Confidence 1110 000 011111000011112222233445555543 11 134344333333 12 3357777766
Q ss_pred cCCCCCEEEEEECCCcEEEEeCCCCCccccccCCceeEeeeccccccCcEEEEEEecCCeEEEEEecCCCCceEEE
Q 000731 401 SKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFR 476 (1325)
Q Consensus 401 pdg~~~~LAs~s~Dgti~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~~~~~~~~~ 476 (1325)
-|.-.++||.+...|.|.+|+++..+.. .. -+... ......|++.+|+.||.+|....++ .+++-|
T Consensus 315 ~d~~~~~la~gnq~g~v~vwdL~~~ep~--~~---ttl~~---s~~~~tVRQ~sfS~dgs~lv~vcdd--~~Vwrw 380 (385)
T KOG1034|consen 315 FDPWQKMLALGNQSGKVYVWDLDNNEPP--KC---TTLTH---SKSGSTVRQTSFSRDGSILVLVCDD--GTVWRW 380 (385)
T ss_pred ecHHHHHHhhccCCCcEEEEECCCCCCc--cC---ceEEe---ccccceeeeeeecccCcEEEEEeCC--CcEEEE
Confidence 6643378999999999999999763322 00 00000 1123489999999999887766554 344444
No 204
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.23 E-value=1.9e-09 Score=131.65 Aligned_cols=205 Identities=15% Similarity=0.077 Sum_probs=124.0
Q ss_pred cEEEEeCCCCeEEEeceecCcEEEEEEcCCCCeEEEEeCCc---cEEEEeecCceeeeeeccccCCCceeccCccccCCC
Q 000731 98 LLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFG---QILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFS 174 (1325)
Q Consensus 98 ~I~lw~~~~~~~e~vg~~~~~I~~~awSPDG~~LA~~s~dg---tV~l~s~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~ 174 (1325)
.|.++|.+++....+..+...+...+|||||+.||.++.++ .|.+|+.... ....+.. + .+
T Consensus 180 ~l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g--~~~~l~~-----------~---~g 243 (430)
T PRK00178 180 TLQRSDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTG--RREQITN-----------F---EG 243 (430)
T ss_pred EEEEECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCC--CEEEccC-----------C---CC
Confidence 37777888765443333466789999999999999987442 4555432111 1111111 1 12
Q ss_pred CeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeecCCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEE
Q 000731 175 FKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVF 254 (1325)
Q Consensus 175 ~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~~~v~~lawsPdG~~IAs~~~d~~~~~~~~V~~ 254 (1325)
.....+|||||+.||.+.+. .+...|.+||..+|+..... .+.+.....+|+|||+.|+.++.... ...|..
T Consensus 244 ~~~~~~~SpDG~~la~~~~~----~g~~~Iy~~d~~~~~~~~lt-~~~~~~~~~~~spDg~~i~f~s~~~g---~~~iy~ 315 (430)
T PRK00178 244 LNGAPAWSPDGSKLAFVLSK----DGNPEIYVMDLASRQLSRVT-NHPAIDTEPFWGKDGRTLYFTSDRGG---KPQIYK 315 (430)
T ss_pred CcCCeEECCCCCEEEEEEcc----CCCceEEEEECCCCCeEEcc-cCCCCcCCeEECCCCCEEEEEECCCC---CceEEE
Confidence 23468999999999833322 23457999999777665432 34445567899999999988775322 346766
Q ss_pred EeCCCceEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeEEEeEEEEecCCcEEEEEccCCCc
Q 000731 255 YERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPL 333 (1325)
Q Consensus 255 ~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~n~~wylkqel~~~~~~~~~v~Wsp~~~~ 333 (1325)
++.++......+.. .......+|||||+.|+....+.+...|.+|+..+.... .+.. ........|+|++..
T Consensus 316 ~d~~~g~~~~lt~~---~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~---~lt~-~~~~~~p~~spdg~~ 387 (430)
T PRK00178 316 VNVNGGRAERVTFV---GNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVR---ILTD-TSLDESPSVAPNGTM 387 (430)
T ss_pred EECCCCCEEEeecC---CCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEE---EccC-CCCCCCceECCCCCE
Confidence 77544322222221 122346789999999999876543335778887765431 1211 111134579998865
No 205
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.23 E-value=5.4e-10 Score=132.08 Aligned_cols=259 Identities=15% Similarity=0.098 Sum_probs=160.2
Q ss_pred eEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEEEe
Q 000731 24 QFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHS 103 (1325)
Q Consensus 24 ~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~V~~v~~spdg~~La~as~dG~I~lw~ 103 (1325)
.+.+-+.....||.+.+++.|.++|.. ......+..+ |.. +......|.++.|-|-...|++++.|.+|+.||
T Consensus 56 sFs~~~n~eHiLavadE~G~i~l~dt~--~~~fr~ee~~----lk~-~~aH~nAifDl~wapge~~lVsasGDsT~r~Wd 128 (720)
T KOG0321|consen 56 SFSAAPNKEHILAVADEDGGIILFDTK--SIVFRLEERQ----LKK-PLAHKNAIFDLKWAPGESLLVSASGDSTIRPWD 128 (720)
T ss_pred cccCCCCccceEEEecCCCceeeecch--hhhcchhhhh----hcc-cccccceeEeeccCCCceeEEEccCCceeeeee
Confidence 444555667889999999999999983 2221100111 221 122246899999999666888999999999999
Q ss_pred CCCCeEE----EeceecCcEEEEEEcCCC-CeEEEEeCCccEEEEeecCce---eeeeeccccC-C-C--ceec-----c
Q 000731 104 VDGNATE----VVGRVEGGVRFISPSPDG-DLLGVTTGFGQILVMTHDWDL---LYENPLEELA-E-G--FDVH-----E 166 (1325)
Q Consensus 104 ~~~~~~e----~vg~~~~~I~~~awSPDG-~~LA~~s~dgtV~l~s~~~d~---~~e~~l~~~~-~-~--~~Vs-----~ 166 (1325)
+.+.++. .+| |.+.|.+++|.|+. ..+++|+.||.|.||+..-.. ..+....... + + .+.. -
T Consensus 129 vk~s~l~G~~~~~G-H~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~ 207 (720)
T KOG0321|consen 129 VKTSRLVGGRLNLG-HTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRI 207 (720)
T ss_pred eccceeecceeecc-cccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccc
Confidence 9886553 566 58999999999985 457888899999999632111 1111110000 0 0 1111 1
Q ss_pred CccccCCCCeEE---EEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeecCC-----------CCceeEEEEcc
Q 000731 167 PELSSSFSFKSP---ISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELK-----------AFMGAVLEWMP 232 (1325)
Q Consensus 167 tqf~~~~~~i~~---isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~-----------~~~v~~lawsP 232 (1325)
..++.+...+.+ +-+.-|-..||+ ++ ..|+.|||||..........++. ...+.++.---
T Consensus 208 ~k~kA~s~ti~ssvTvv~fkDe~tlaS-ag-----a~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDs 281 (720)
T KOG0321|consen 208 RKWKAASNTIFSSVTVVLFKDESTLAS-AG-----AADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDS 281 (720)
T ss_pred cccccccCceeeeeEEEEEeccceeee-cc-----CCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecC
Confidence 112234444444 677788889994 43 24789999998554433332221 11245666666
Q ss_pred CCCeE-EEEecCCCCCCCCeEEEEeCCCceEEE-EEeccCC--CCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCC
Q 000731 233 SGANI-AAVYDRKSENKCPSIVFYERNGLERSS-FDINEQI--DSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNN 307 (1325)
Q Consensus 233 dG~~I-As~~~d~~~~~~~~V~~~e~nGl~~~~-f~l~~~~--~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~n~ 307 (1325)
.|.++ |++. | +.|-+|+.-++..+- +...+.. ...|.+ .-||||..|++++.|. ...+|.+++.
T Consensus 282 sGt~L~AsCt-D------~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks-~lSpd~~~l~SgSsd~---~ayiw~vs~~ 349 (720)
T KOG0321|consen 282 SGTYLFASCT-D------NSIYFYNMRSLSISPVAEFSGKLNSSFYVKS-ELSPDDCSLLSGSSDE---QAYIWVVSSP 349 (720)
T ss_pred CCCeEEEEec-C------CcEEEEeccccCcCchhhccCcccceeeeee-ecCCCCceEeccCCCc---ceeeeeecCc
Confidence 77765 6665 3 469999865543321 1111110 112333 4799999999999998 7899998863
No 206
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.21 E-value=5.9e-10 Score=125.48 Aligned_cols=211 Identities=11% Similarity=0.078 Sum_probs=140.0
Q ss_pred EeceecCcEEEEEEcCC-CCeEEEEeCCccEEEEeecCceeeeeeccccCCCceeccCccccCCCCeEEEEEecCCc-EE
Q 000731 111 VVGRVEGGVRFISPSPD-GDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGK-YF 188 (1325)
Q Consensus 111 ~vg~~~~~I~~~awSPD-G~~LA~~s~dgtV~l~s~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~-~l 188 (1325)
.+..|.+.|..++|+|- ...||++|+|-+|.+|..-.+-+. .. ...+|- .+.+|.-.+-.|.|.|-.. .|
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~-~~-----ltepvv--~L~gH~rrVg~V~wHPtA~NVL 147 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLT-RD-----LTEPVV--ELYGHQRRVGLVQWHPTAPNVL 147 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccc-cC-----cccceE--EEeecceeEEEEeecccchhhH
Confidence 56668999999999994 578999999999999963211110 00 011111 1125667788999999875 44
Q ss_pred EEeeccccccCCCCEEEEEECCCCceeeeecCCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEEEe-CCCceEEEEEe
Q 000731 189 ATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYE-RNGLERSSFDI 267 (1325)
Q Consensus 189 Atvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~~~v~~lawsPdG~~IAs~~~d~~~~~~~~V~~~e-~nGl~~~~f~l 267 (1325)
+ ++ +.|.+|.|||..+|+-+-++. |+..+.+++|+-||+++++++.| ..|++|| +.|....+-
T Consensus 148 l-sa------g~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckD------KkvRv~dpr~~~~v~e~-- 211 (472)
T KOG0303|consen 148 L-SA------GSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKD------KKVRVIDPRRGTVVSEG-- 211 (472)
T ss_pred h-hc------cCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeeccc------ceeEEEcCCCCcEeeec--
Confidence 4 33 357999999999999888877 99999999999999999999997 4699999 445433321
Q ss_pred ccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeE-EEeEEEEecCCc-EEEEEccCCCcEEEEEecCCcEE
Q 000731 268 NEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWY-LKYEIRYLRRDG-IRFMWHPTKPLQLICWTLDGQIT 345 (1325)
Q Consensus 268 ~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~n~~wy-lkqel~~~~~~~-~~v~Wsp~~~~~L~~~~~~g~~~ 345 (1325)
..|....-..+-|-.+|.++.+|-+......+-||+-.|..-- --+++ ...++ ..=-|+|++...-.++.+||.+.
T Consensus 212 ~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~el--DtSnGvl~PFyD~dt~ivYl~GKGD~~IR 289 (472)
T KOG0303|consen 212 VAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQEL--DTSNGVLLPFYDPDTSIVYLCGKGDSSIR 289 (472)
T ss_pred ccccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEe--ccCCceEEeeecCCCCEEEEEecCCcceE
Confidence 2232334556778899996655544333337999998874311 01222 11233 44468888776334444566655
Q ss_pred EE
Q 000731 346 TY 347 (1325)
Q Consensus 346 ~~ 347 (1325)
.+
T Consensus 290 Yy 291 (472)
T KOG0303|consen 290 YF 291 (472)
T ss_pred EE
Confidence 33
No 207
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.21 E-value=9.1e-10 Score=126.59 Aligned_cols=219 Identities=15% Similarity=0.140 Sum_probs=151.2
Q ss_pred CCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeecCCCCceeEEEEccCCCeEEEEecCCCCCCCCeEE
Q 000731 174 SFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIV 253 (1325)
Q Consensus 174 ~~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~~~v~~lawsPdG~~IAs~~~d~~~~~~~~V~ 253 (1325)
+.+.+++=+|+|.|++ .|+. .+.+.+|...+|.++.+...|-..+++|-|+-||.+|.|++.| +.|.
T Consensus 82 g~v~al~s~n~G~~l~-ag~i------~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskD------g~V~ 148 (476)
T KOG0646|consen 82 GPVHALASSNLGYFLL-AGTI------SGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKD------GAVL 148 (476)
T ss_pred cceeeeecCCCceEEE-eecc------cCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCC------ccEE
Confidence 4568899999999988 5533 4899999999999999998898899999999999999999986 5688
Q ss_pred EEeCCCce-----EEE--EEeccCCCCcEEEEEEccC--CCeeEEEEccCCCCeEEEEEeeCCeeEEEeEEEEecCCcEE
Q 000731 254 FYERNGLE-----RSS--FDINEQIDSTVELLKWNCM--SDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIR 324 (1325)
Q Consensus 254 ~~e~nGl~-----~~~--f~l~~~~~~~V~~laWSpD--g~~LAs~~~d~~~~~VqLW~~~n~~wylkqel~~~~~~~~~ 324 (1325)
+|...-+. |.. +..-..|.-.|.++.-.+- ...|++++.|. ++++|+++...-. ..+.|+ ....+
T Consensus 149 vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~---t~k~wdlS~g~LL--lti~fp-~si~a 222 (476)
T KOG0646|consen 149 VWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDR---TIKLWDLSLGVLL--LTITFP-SSIKA 222 (476)
T ss_pred EEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCc---eEEEEEeccceee--EEEecC-Cccee
Confidence 89632211 100 0001233556888776654 45799999999 9999999876532 344442 23377
Q ss_pred EEEccCCCcEEEEEecCCcEEEEEEEEeeeeCCCe---eEEEEeCCEEEEeecCCcCCCCCceeeeecCCC--CEEEEEE
Q 000731 325 FMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENS---TALVIDGSKILVTPLSLSLMPPPMYLFSLKFPT--AVTEMAF 399 (1325)
Q Consensus 325 v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~---~v~viDG~~l~lt~l~~~~vPpPm~~~~l~~~~--~V~~VaF 399 (1325)
+.-||-.. .+++++.+|.+....+. ...+...+ -....++.+++. -..|.+ +|++++.
T Consensus 223 v~lDpae~-~~yiGt~~G~I~~~~~~-~~~~~~~~v~~k~~~~~~t~~~~---------------~~Gh~~~~~ITcLai 285 (476)
T KOG0646|consen 223 VALDPAER-VVYIGTEEGKIFQNLLF-KLSGQSAGVNQKGRHEENTQINV---------------LVGHENESAITCLAI 285 (476)
T ss_pred EEEccccc-EEEecCCcceEEeeehh-cCCcccccccccccccccceeee---------------eccccCCcceeEEEE
Confidence 88898765 47899888877543321 11110000 011112221110 124555 8999999
Q ss_pred ecCCCCCEEEEEECCCcEEEEeCCCCCcccc
Q 000731 400 YSKSSKNCLAAILSDGCLCVVDLPAPDMLED 430 (1325)
Q Consensus 400 Spdg~~~~LAs~s~Dgti~lw~~~~~~~~~~ 430 (1325)
|-|| +.|++|+.||+|++|+.....++.+
T Consensus 286 s~Dg--tlLlSGd~dg~VcvWdi~S~Q~iRt 314 (476)
T KOG0646|consen 286 STDG--TLLLSGDEDGKVCVWDIYSKQCIRT 314 (476)
T ss_pred ecCc--cEEEeeCCCCCEEEEecchHHHHHH
Confidence 9999 9999999999999999987655533
No 208
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.20 E-value=2.5e-10 Score=125.89 Aligned_cols=195 Identities=14% Similarity=0.086 Sum_probs=149.0
Q ss_pred CCEEEEEEccCCCEEEEEECCCcEEEEeCCCCe-EE---EeceecCcEEEEEEcCCCCeEEEEeCCccEEEEee----cC
Q 000731 76 DSITAFDYLMEKEALIVGTSSGLLLLHSVDGNA-TE---VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTH----DW 147 (1325)
Q Consensus 76 ~~V~~v~~spdg~~La~as~dG~I~lw~~~~~~-~e---~vg~~~~~I~~~awSPDG~~LA~~s~dgtV~l~s~----~~ 147 (1325)
..|++.+|++|+..+|++-.+.+|.||...+.. .+ .+..|+..|+++.|+|.+..|++++.|.+-.+|+. .|
T Consensus 11 ~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~W 90 (361)
T KOG1523|consen 11 EPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTW 90 (361)
T ss_pred CceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCee
Confidence 479999999999999999999999999988765 33 56668999999999999999999999999999975 35
Q ss_pred ceeeeeeccccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceee-----eecCCC
Q 000731 148 DLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQA-----SSELKA 222 (1325)
Q Consensus 148 d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~-----t~e~~~ 222 (1325)
.+.-.+- .++....+|.|+|.+..|| +++ +.+.|-||-- +++-.- +-.|+.
T Consensus 91 kptlvLl----------------RiNrAAt~V~WsP~enkFA-VgS------gar~isVcy~-E~ENdWWVsKhikkPir 146 (361)
T KOG1523|consen 91 KPTLVLL----------------RINRAATCVKWSPKENKFA-VGS------GARLISVCYY-EQENDWWVSKHIKKPIR 146 (361)
T ss_pred ccceeEE----------------EeccceeeEeecCcCceEE-ecc------CccEEEEEEE-ecccceehhhhhCCccc
Confidence 4433221 1234568999999999999 774 4589999987 655444 456778
Q ss_pred CceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeC-----------C--------CceEEEEEeccCCCCcEEEEEEccC
Q 000731 223 FMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYER-----------N--------GLERSSFDINEQIDSTVELLKWNCM 283 (1325)
Q Consensus 223 ~~v~~lawsPdG~~IAs~~~d~~~~~~~~V~~~e~-----------n--------Gl~~~~f~l~~~~~~~V~~laWSpD 283 (1325)
..|.+++|.|++-++|.|+.| ...++|.. + |..-.|+. ...++|..+.|||+
T Consensus 147 Stv~sldWhpnnVLlaaGs~D------~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~---~~ggwvh~v~fs~s 217 (361)
T KOG1523|consen 147 STVTSLDWHPNNVLLAAGSTD------GKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEAS---SSGGWVHGVLFSPS 217 (361)
T ss_pred cceeeeeccCCcceecccccC------cceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhc---cCCCceeeeEeCCC
Confidence 889999999999999999976 34555531 1 11111111 23468999999999
Q ss_pred CCeeEEEEccCCCCeEEEEEeeC
Q 000731 284 SDLLAAVVRFEEYDSVKICFFSN 306 (1325)
Q Consensus 284 g~~LAs~~~d~~~~~VqLW~~~n 306 (1325)
|..||-.+.|. +|-+=|-.+
T Consensus 218 G~~lawv~Hds---~v~~~da~~ 237 (361)
T KOG1523|consen 218 GNRLAWVGHDS---TVSFVDAAG 237 (361)
T ss_pred CCEeeEecCCC---ceEEeecCC
Confidence 99999999998 666655443
No 209
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.19 E-value=8.1e-09 Score=126.85 Aligned_cols=258 Identities=15% Similarity=0.151 Sum_probs=171.5
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEeccccc-ccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEE
Q 000731 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQ-NERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLL 100 (1325)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~-~~~~~~~~~l~~~l~~~~~~~~~~V~~v~~spdg~~La~as~dG~I~ 100 (1325)
.+++.++.+.++.+.++..|+.|..|.-. . ......... +.+| .+.|.+++|++||..|.+|+.-|.+.
T Consensus 207 ~~t~~~~spn~~~~Aa~d~dGrI~vw~d~--~~~~~~~t~t~----lHWH----~~~V~~L~fS~~G~~LlSGG~E~VLv 276 (792)
T KOG1963|consen 207 NITCVALSPNERYLAAGDSDGRILVWRDF--GSSDDSETCTL----LHWH----HDEVNSLSFSSDGAYLLSGGREGVLV 276 (792)
T ss_pred cceeEEeccccceEEEeccCCcEEEEecc--ccccccccceE----EEec----ccccceeEEecCCceEeecccceEEE
Confidence 35778888988988888889999999872 2 111111111 5666 46899999999999999999999999
Q ss_pred EEeCCCCeEEEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeeeccccCCCceec-cCccccCCCCeEEE
Q 000731 101 LHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVH-EPELSSSFSFKSPI 179 (1325)
Q Consensus 101 lw~~~~~~~e~vg~~~~~I~~~awSPDG~~LA~~s~dgtV~l~s~~~d~~~e~~l~~~~~~~~Vs-~tqf~~~~~~i~~i 179 (1325)
+|...+++-+.+....+.|..+.|||||++.++..+|+.|.+.... +......+... .+.+ ++ =....+-...+
T Consensus 277 ~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~-dl~~k~tIsgi---~~~~~~~-k~~~~~l~t~~ 351 (792)
T KOG1963|consen 277 LWQLETGKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKAS-DLEIKSTISGI---KPPTPST-KTRPQSLTTGV 351 (792)
T ss_pred EEeecCCCcccccccCCeeEEEEEcCCCCeEEEEecCceEEEEecc-chhhhhhccCc---cCCCccc-cccccccceeE
Confidence 9999998766777777889999999999999999999999876431 11111111110 0000 00 00011233567
Q ss_pred EEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeec-----CCCC------ceeEEEEccCCCeEEEEecCCC---
Q 000731 180 SWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSE-----LKAF------MGAVLEWMPSGANIAAVYDRKS--- 245 (1325)
Q Consensus 180 sWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e-----~~~~------~v~~lawsPdG~~IAs~~~d~~--- 245 (1325)
+..|--..++ .. +..+.|++||..+-..++..+ .+++ .+.+++.+-.|+++|++.....
T Consensus 352 ~idpr~~~~v-ln------~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~ 424 (792)
T KOG1963|consen 352 SIDPRTNSLV-LN------GHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFN 424 (792)
T ss_pred EEcCCCCcee-ec------CCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhh
Confidence 7777444444 33 234799999986665555432 1222 2477888888999999854211
Q ss_pred -CCCCCeEEEEeCCCceEEEEEec----cCCCCc-EEEEEEccCCC-eeEEEEccCCCCeEEEEEee
Q 000731 246 -ENKCPSIVFYERNGLERSSFDIN----EQIDST-VELLKWNCMSD-LLAAVVRFEEYDSVKICFFS 305 (1325)
Q Consensus 246 -~~~~~~V~~~e~nGl~~~~f~l~----~~~~~~-V~~laWSpDg~-~LAs~~~d~~~~~VqLW~~~ 305 (1325)
.+....++||-.|+... .|.|. .||+.. |..+..+|-.. .+++++.|+ .+++|-..
T Consensus 425 ~~~~e~~LKFW~~n~~~k-t~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg---~~KiW~~~ 487 (792)
T KOG1963|consen 425 FFDGEVSLKFWQYNPNSK-TFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDG---DFKIWVFT 487 (792)
T ss_pred ccCceEEEEEEEEcCCcc-eeEEEEEEecCCCceeEEEEEecCcccceeEEeccCC---eEEEEEEe
Confidence 11246789999887553 35554 455544 44455555554 788898988 99999984
No 210
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.19 E-value=3.1e-09 Score=122.19 Aligned_cols=290 Identities=14% Similarity=0.160 Sum_probs=186.9
Q ss_pred EEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCc--EEEEeCCCC--eEE
Q 000731 35 LFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGL--LLLHSVDGN--ATE 110 (1325)
Q Consensus 35 l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~V~~v~~spdg~~La~as~dG~--I~lw~~~~~--~~e 110 (1325)
+-++|....+..||.+..+.. ..+..+.- ...+.+|.|..... |++++..|+ |.+|..++. ++.
T Consensus 5 l~~aS~gd~~kl~D~s~~~~~---------~~~~~~t~--~pg~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~~~~Vp 72 (673)
T KOG4378|consen 5 LHVASTGDKTKLSDFSDLETK---------SEYVHQTA--EPGDFSFNWQRRNF-LVVASMAGDKVMRIKEKDGKTPEVP 72 (673)
T ss_pred eeeeccCCceEEeecccccCc---------cccccCCC--CCcceeeeccccce-EEEeecCCceeEEEecccCCCCccc
Confidence 445555344999998421111 11222322 23489999998764 777766554 777887764 344
Q ss_pred Eecee----cCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeeeccccCCCceeccCccccCCCCeEEEEEecCCc
Q 000731 111 VVGRV----EGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGK 186 (1325)
Q Consensus 111 ~vg~~----~~~I~~~awSPDG~~LA~~s~dgtV~l~s~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~ 186 (1325)
.++.. .-.|.|+++| .++++++..++|+||+ .......... ++|.+.|..+.+.-...
T Consensus 73 ~~~k~~gd~~~Cv~~~s~S---~y~~sgG~~~~Vkiwd----l~~kl~hr~l-----------kdh~stvt~v~YN~~De 134 (673)
T KOG4378|consen 73 RVRKLTGDNAFCVACASQS---LYEISGGQSGCVKIWD----LRAKLIHRFL-----------KDHQSTVTYVDYNNTDE 134 (673)
T ss_pred eeeccccchHHHHhhhhcc---eeeeccCcCceeeehh----hHHHHHhhhc-----------cCCcceeEEEEecCCcc
Confidence 44432 1236677777 8899999999998864 3322222211 25667889999999999
Q ss_pred EEEEeeccccccCCCCEEEEEECCCCceeeeecCCCC-ceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeCCCceEEEE
Q 000731 187 YFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAF-MGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSF 265 (1325)
Q Consensus 187 ~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~~-~v~~lawsPdG~~IAs~~~d~~~~~~~~V~~~e~nGl~~~~f 265 (1325)
|||++ +. .+.|-|-+..++..-.++....| .+.-|.|||.-+.+.+...| ++.|.+||.+|.... |
T Consensus 135 yiAsv-s~------gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd-----~G~VtlwDv~g~sp~-~ 201 (673)
T KOG4378|consen 135 YIASV-SD------GGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASD-----KGAVTLWDVQGMSPI-F 201 (673)
T ss_pred eeEEe-cc------CCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeecc-----CCeEEEEeccCCCcc-c
Confidence 99944 32 25688888866665555543334 35689999999866554444 468999999986532 2
Q ss_pred EeccCCCCcEEEEEEccCCC-eeEEEEccCCCCeEEEEEeeCCeeEEEeEEEEecCCc-EEEEEccCCCcEEEEEecCCc
Q 000731 266 DINEQIDSTVELLKWNCMSD-LLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDG-IRFMWHPTKPLQLICWTLDGQ 343 (1325)
Q Consensus 266 ~l~~~~~~~V~~laWSpDg~-~LAs~~~d~~~~~VqLW~~~n~~wylkqel~~~~~~~-~~v~Wsp~~~~~L~~~~~~g~ 343 (1325)
.....|......|+|||-.+ +|++.+.|. .|.+||..... +...|.+ ..+ ..++|+++|.. |..++..|.
T Consensus 202 ~~~~~HsAP~~gicfspsne~l~vsVG~Dk---ki~~yD~~s~~--s~~~l~y--~~Plstvaf~~~G~~-L~aG~s~G~ 273 (673)
T KOG4378|consen 202 HASEAHSAPCRGICFSPSNEALLVSVGYDK---KINIYDIRSQA--STDRLTY--SHPLSTVAFSECGTY-LCAGNSKGE 273 (673)
T ss_pred chhhhccCCcCcceecCCccceEEEecccc---eEEEeeccccc--ccceeee--cCCcceeeecCCceE-EEeecCCce
Confidence 22233456778999999765 677788888 89999987432 2234444 234 67899998765 888888887
Q ss_pred EEEEEEEEeeeeCCCeeEEEEeCCEEEEeecCCcCCCCCceeeeecCCCCEEEEEEecCC
Q 000731 344 ITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKS 403 (1325)
Q Consensus 344 ~~~~~~~~~~~~~d~~~v~viDG~~l~lt~l~~~~vPpPm~~~~l~~~~~V~~VaFSpdg 403 (1325)
++.|+.. . .|.|.... -.|...|.+|||-|..
T Consensus 274 ~i~YD~R-------------------------~--~k~Pv~v~-sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 274 LIAYDMR-------------------------S--TKAPVAVR-SAHDASVTRVAFQPSP 305 (673)
T ss_pred EEEEecc-------------------------c--CCCCceEe-eecccceeEEEeeecc
Confidence 7655432 1 23344321 1477789999998885
No 211
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.19 E-value=6.7e-10 Score=126.94 Aligned_cols=240 Identities=10% Similarity=0.016 Sum_probs=162.7
Q ss_pred CCCEEEEEeCCCcEEEEecccccccccceeeccccc---------cccccCC-CCCCEEEEEEccCC-CEEEEEECCCcE
Q 000731 31 EQNRLFFASSANNIYSAQLSSFQNERASIKTAISAE---------IEHIDLE-PGDSITAFDYLMEK-EALIVGTSSGLL 99 (1325)
Q Consensus 31 ~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~---------l~~~~~~-~~~~V~~v~~spdg-~~La~as~dG~I 99 (1325)
-++.+.+++=+..|-.||+. ..... ....+|-+. -+.+... ..+.|.+++|.-.- ..||+||+|.||
T Consensus 191 ~gNyvAiGtmdp~IeIWDLD-I~d~v-~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV 268 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLD-IVDAV-LPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTV 268 (463)
T ss_pred CcceEEEeccCceeEEeccc-ccccc-ccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceE
Confidence 36788888889999999994 12111 111111100 0111000 03567777777654 589999999999
Q ss_pred EEEeCCCCeEE-EeceecCcEEEEEEcCC-CCeEEEEeCCccEEEEe-ecCceeeeeeccccCCCceeccCccccCCCCe
Q 000731 100 LLHSVDGNATE-VVGRVEGGVRFISPSPD-GDLLGVTTGFGQILVMT-HDWDLLYENPLEELAEGFDVHEPELSSSFSFK 176 (1325)
Q Consensus 100 ~lw~~~~~~~e-~vg~~~~~I~~~awSPD-G~~LA~~s~dgtV~l~s-~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i 176 (1325)
++||++++++. +..+|.+.|.+++|.|. .+.|.+||-|++|.+-+ |+ ---.+..+. .++.|
T Consensus 269 ~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~-~~~s~~~wk---------------~~g~V 332 (463)
T KOG0270|consen 269 KLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRD-PSNSGKEWK---------------FDGEV 332 (463)
T ss_pred EEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccC-ccccCceEE---------------eccce
Confidence 99999998875 66678889999999987 68899999999998854 21 000111111 23567
Q ss_pred EEEEEecCCcEEEEeeccccccCCCCEEEEEECC-CCceeeeecCCCCceeEEEEccCC-CeEEEEecCCCCCCCCeEEE
Q 000731 177 SPISWRGDGKYFATLSEFCNSSKLHKRLKVWERD-SGTLQASSELKAFMGAVLEWMPSG-ANIAAVYDRKSENKCPSIVF 254 (1325)
Q Consensus 177 ~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~-~G~l~~t~e~~~~~v~~lawsPdG-~~IAs~~~d~~~~~~~~V~~ 254 (1325)
-.++|.|-......++ +.+|+++=+|.+ .|++..+...|++.|.+|++++.- +++++++.+ ..|++
T Consensus 333 Ekv~w~~~se~~f~~~------tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d------~~Vkl 400 (463)
T KOG0270|consen 333 EKVAWDPHSENSFFVS------TDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTD------KVVKL 400 (463)
T ss_pred EEEEecCCCceeEEEe------cCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeecccc------ceEEE
Confidence 8999999887544244 346899999954 679999999999999999999975 467777775 57999
Q ss_pred EeCCCceEE-----EEEeccCCCCcEEEEEEccCCC-eeEEEEccCCCCeEEEEEeeCCe
Q 000731 255 YERNGLERS-----SFDINEQIDSTVELLKWNCMSD-LLAAVVRFEEYDSVKICFFSNNH 308 (1325)
Q Consensus 255 ~e~nGl~~~-----~f~l~~~~~~~V~~laWSpDg~-~LAs~~~d~~~~~VqLW~~~n~~ 308 (1325)
|+..+..-+ .|.+ +...+.++.|+-- .||.++... .+++|++.+++
T Consensus 401 w~~~~~~~~~v~~~~~~~-----~rl~c~~~~~~~a~~la~GG~k~---~~~vwd~~~~~ 452 (463)
T KOG0270|consen 401 WKFDVDSPKSVKEHSFKL-----GRLHCFALDPDVAFTLAFGGEKA---VLRVWDIFTNS 452 (463)
T ss_pred EeecCCCCcccccccccc-----cceeecccCCCcceEEEecCccc---eEEEeecccCh
Confidence 985443221 1211 2345566666643 577777766 89999987754
No 212
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.19 E-value=2.7e-09 Score=116.06 Aligned_cols=201 Identities=14% Similarity=0.125 Sum_probs=136.0
Q ss_pred CCCEEEEEEccCC-CEEEEEECC-------CcEEEEeCCC-------CeEEEeceec----CcEEEEEEcCCCCeEEEEe
Q 000731 75 GDSITAFDYLMEK-EALIVGTSS-------GLLLLHSVDG-------NATEVVGRVE----GGVRFISPSPDGDLLGVTT 135 (1325)
Q Consensus 75 ~~~V~~v~~spdg-~~La~as~d-------G~I~lw~~~~-------~~~e~vg~~~----~~I~~~awSPDG~~LA~~s 135 (1325)
.+.|+.++-+|-. +.|+++..+ -.+.||++.. ..+|++.+.+ +.|.|+.|-|++..||+..
T Consensus 63 agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~ 142 (370)
T KOG1007|consen 63 AGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMD 142 (370)
T ss_pred CcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec
Confidence 5789999999954 566666542 1367898743 1245554333 6799999999999999988
Q ss_pred CCccEEEEeecCce--eeeeeccccCCCceeccCccccCCCCeEEEEEec--CCcEEEEeeccccccCCCCEEEEEECCC
Q 000731 136 GFGQILVMTHDWDL--LYENPLEELAEGFDVHEPELSSSFSFKSPISWRG--DGKYFATLSEFCNSSKLHKRLKVWERDS 211 (1325)
Q Consensus 136 ~dgtV~l~s~~~d~--~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWsp--DG~~lAtvss~d~~~~~d~~irVWd~~~ 211 (1325)
|+.|.+|+.+-.+ ..++...... ++.....+-+||| ||..+| +. ++++++.||.++
T Consensus 143 -dn~i~l~~l~ess~~vaev~ss~s~-----------e~~~~ftsg~WspHHdgnqv~-tt-------~d~tl~~~D~RT 202 (370)
T KOG1007|consen 143 -DNNIVLWSLDESSKIVAEVLSSESA-----------EMRHSFTSGAWSPHHDGNQVA-TT-------SDSTLQFWDLRT 202 (370)
T ss_pred -cCceEEEEcccCcchheeecccccc-----------cccceecccccCCCCccceEE-Ee-------CCCcEEEEEccc
Confidence 6789999864222 1222211111 1223457788998 999999 42 368999999866
Q ss_pred Cceeee-ecCCCCceeEEEEccCCCe-EEEEecCCCCCCCCeEEEEeCCCceEEEEEeccCCCCcEEEEEEccCCC-eeE
Q 000731 212 GTLQAS-SELKAFMGAVLEWMPSGAN-IAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSD-LLA 288 (1325)
Q Consensus 212 G~l~~t-~e~~~~~v~~lawsPdG~~-IAs~~~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~-~LA 288 (1325)
-..... -..|...+.++.|+|+-+. ||++++| ..|+|||.-...---+.++. +..+|+++.|+|--+ ++.
T Consensus 203 ~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDd------gyvriWD~R~tk~pv~el~~-HsHWvW~VRfn~~hdqLiL 275 (370)
T KOG1007|consen 203 MKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDD------GYVRIWDTRKTKFPVQELPG-HSHWVWAVRFNPEHDQLIL 275 (370)
T ss_pred hhhhcchhhhhcceeeeccCCCCceEEEEEcCCC------ccEEEEeccCCCccccccCC-CceEEEEEEecCccceEEE
Confidence 544433 3457778999999999885 5666664 67999994322212223333 467999999999765 455
Q ss_pred EEEccCCCCeEEEEEee
Q 000731 289 AVVRFEEYDSVKICFFS 305 (1325)
Q Consensus 289 s~~~d~~~~~VqLW~~~ 305 (1325)
++++|. .|-||...
T Consensus 276 s~~SDs---~V~Lsca~ 289 (370)
T KOG1007|consen 276 SGGSDS---AVNLSCAS 289 (370)
T ss_pred ecCCCc---eeEEEecc
Confidence 667777 79999865
No 213
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.17 E-value=1.3e-09 Score=128.87 Aligned_cols=274 Identities=15% Similarity=0.126 Sum_probs=174.5
Q ss_pred EEEEcCC---CCeEEEEeCCccEEEEeecCceeeeeeccccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccc
Q 000731 121 FISPSPD---GDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNS 197 (1325)
Q Consensus 121 ~~awSPD---G~~LA~~s~dgtV~l~s~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~ 197 (1325)
+..|++- ...||.+.+||.|.+.+.. . +...... .++ -.|..|.+.|..+.|-| |+... ++.
T Consensus 54 ~~sFs~~~n~eHiLavadE~G~i~l~dt~----~-~~fr~ee-~~l---k~~~aH~nAifDl~wap-ge~~l-Vsa---- 118 (720)
T KOG0321|consen 54 ADSFSAAPNKEHILAVADEDGGIILFDTK----S-IVFRLEE-RQL---KKPLAHKNAIFDLKWAP-GESLL-VSA---- 118 (720)
T ss_pred cccccCCCCccceEEEecCCCceeeecch----h-hhcchhh-hhh---cccccccceeEeeccCC-CceeE-EEc----
Confidence 3566653 5689999999999876421 0 1111010 000 12337889999999999 87555 432
Q ss_pred cCCCCEEEEEECCCCceeee--ecCCCCceeEEEEccCCC-eEEEEecCCCCCCCCeEEEEeC--CCceEE-EEE-----
Q 000731 198 SKLHKRLKVWERDSGTLQAS--SELKAFMGAVLEWMPSGA-NIAAVYDRKSENKCPSIVFYER--NGLERS-SFD----- 266 (1325)
Q Consensus 198 ~~~d~~irVWd~~~G~l~~t--~e~~~~~v~~lawsPdG~-~IAs~~~d~~~~~~~~V~~~e~--nGl~~~-~f~----- 266 (1325)
.||.++|+||..++.+.-. .-+|.+.+.+++|+|... .+++|++| +.|.+||. |+..+- +|.
T Consensus 119 -sGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRD------g~illWD~R~n~~d~~e~~~~~~~~ 191 (720)
T KOG0321|consen 119 -SGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRD------GEILLWDCRCNGVDALEEFDNRIYG 191 (720)
T ss_pred -cCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCC------CcEEEEEEeccchhhHHHHhhhhhc
Confidence 4679999999988888777 778999999999999765 56888886 56999983 331100 010
Q ss_pred ---------------ec--cCCCCcEEE---EEEccCCCeeEEEEc-cCCCCeEEEEEee-CCeeEEEeEEEEe---cC-
Q 000731 267 ---------------IN--EQIDSTVEL---LKWNCMSDLLAAVVR-FEEYDSVKICFFS-NNHWYLKYEIRYL---RR- 320 (1325)
Q Consensus 267 ---------------l~--~~~~~~V~~---laWSpDg~~LAs~~~-d~~~~~VqLW~~~-n~~wylkqel~~~---~~- 320 (1325)
++ ..+...|.+ +-+.-|...||+++. |+ +|++||+. ||.-|.++.+..+ ..
T Consensus 192 ~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~---~iKVWDLRk~~~~~r~ep~~~~~~~t~s 268 (720)
T KOG0321|consen 192 RHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADS---TIKVWDLRKNYTAYRQEPRGSDKYPTHS 268 (720)
T ss_pred cccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCc---ceEEEeecccccccccCCCcccCccCcc
Confidence 00 001233555 666788888999887 77 99999986 6655554433221 11
Q ss_pred --C-c-EEEEEccCCCcEEEEEecCCcEEEEEEEE-eee--------------------eCCCeeEEEEeCCEEEEeecC
Q 000731 321 --D-G-IRFMWHPTKPLQLICWTLDGQITTYNFIW-TTA--------------------VMENSTALVIDGSKILVTPLS 375 (1325)
Q Consensus 321 --~-~-~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~-~~~--------------------~~d~~~v~viDG~~l~lt~l~ 375 (1325)
. + +.+.-|..|++ |..-+.|+.++.|+..- ++. +++..++...-....++|.+.
T Consensus 269 krs~G~~nL~lDssGt~-L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs 347 (720)
T KOG0321|consen 269 KRSVGQVNLILDSSGTY-LFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVS 347 (720)
T ss_pred cceeeeEEEEecCCCCe-EEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeec
Confidence 1 1 55666666665 55555688887654320 000 444444444334456777776
Q ss_pred CcCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCC
Q 000731 376 LSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPA 424 (1325)
Q Consensus 376 ~~~vPpPm~~~~l~~~~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~~~~ 424 (1325)
....||-.. +.|.-.|.+|.|.|... .-+|+++.|.++++|++..
T Consensus 348 ~~e~~~~~l---~Ght~eVt~V~w~pS~~-t~v~TcSdD~~~kiW~l~~ 392 (720)
T KOG0321|consen 348 SPEAPPALL---LGHTREVTTVRWLPSAT-TPVATCSDDFRVKIWRLSN 392 (720)
T ss_pred CccCChhhh---hCcceEEEEEeeccccC-CCceeeccCcceEEEeccC
Confidence 655555322 35777899999999863 4567779999999999954
No 214
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.17 E-value=1.7e-09 Score=124.06 Aligned_cols=250 Identities=14% Similarity=0.123 Sum_probs=156.5
Q ss_pred CCCEEEEEEccCCC--EEEEEECCCcEEEEeCCCCe-----EEEeceecCcEEEEEEcCCC-CeEEEEeCCccEEEEeec
Q 000731 75 GDSITAFDYLMEKE--ALIVGTSSGLLLLHSVDGNA-----TEVVGRVEGGVRFISPSPDG-DLLGVTTGFGQILVMTHD 146 (1325)
Q Consensus 75 ~~~V~~v~~spdg~--~La~as~dG~I~lw~~~~~~-----~e~vg~~~~~I~~~awSPDG-~~LA~~s~dgtV~l~s~~ 146 (1325)
.++|.+++|+|.-. .+|+|...|+|-+||..+.+ +.....|.+.|.++.|||.. ..+.+.|-||+|.+++-.
T Consensus 186 ~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~ 265 (498)
T KOG4328|consen 186 DRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFE 265 (498)
T ss_pred ccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeec
Confidence 47899999999764 78889999999999996421 22333467889999999975 457778899999987532
Q ss_pred Cceeeeeeccc---------cC---CCceec----cCccc---------------cCCCCeEEEEEecCCc-EEEEeecc
Q 000731 147 WDLLYENPLEE---------LA---EGFDVH----EPELS---------------SSFSFKSPISWRGDGK-YFATLSEF 194 (1325)
Q Consensus 147 ~d~~~e~~l~~---------~~---~~~~Vs----~tqf~---------------~~~~~i~~isWspDG~-~lAtvss~ 194 (1325)
... .+.-+.. .+ +.+.|- -.-|+ -|+..|.+|++.|-.. +|| +++.
T Consensus 266 ~~i-~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~la-T~s~ 343 (498)
T KOG4328|consen 266 GNI-SEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLA-TASL 343 (498)
T ss_pred chh-hHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchhee-eccc
Confidence 111 1111111 00 111110 00111 3667899999999875 566 5544
Q ss_pred ccccCCCCEEEEEECCC--Cc---eeeeecCCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeCCCceEE---EEE
Q 000731 195 CNSSKLHKRLKVWERDS--GT---LQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERS---SFD 266 (1325)
Q Consensus 195 d~~~~~d~~irVWd~~~--G~---l~~t~e~~~~~v~~lawsPdG~~IAs~~~d~~~~~~~~V~~~e~nGl~~~---~f~ 266 (1325)
|++.||||.+. ++ ++++. +|...|.+..|||+|-.|++.+.| ..|++|+-.-.... .-+
T Consensus 344 ------D~T~kIWD~R~l~~K~sp~lst~-~HrrsV~sAyFSPs~gtl~TT~~D------~~IRv~dss~~sa~~~p~~~ 410 (498)
T KOG4328|consen 344 ------DQTAKIWDLRQLRGKASPFLSTL-PHRRSVNSAYFSPSGGTLLTTCQD------NEIRVFDSSCISAKDEPLGT 410 (498)
T ss_pred ------CcceeeeehhhhcCCCCcceecc-cccceeeeeEEcCCCCceEeeccC------CceEEeecccccccCCccce
Confidence 58999999753 22 23333 478889999999999889888875 56999986210000 001
Q ss_pred ec-cCCC---CcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeEEEeEEEEecC-Cc-EEEEEccCCCcEEEEEec
Q 000731 267 IN-EQID---STVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRR-DG-IRFMWHPTKPLQLICWTL 340 (1325)
Q Consensus 267 l~-~~~~---~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~n~~wylkqel~~~~~-~~-~~v~Wsp~~~~~L~~~~~ 340 (1325)
++ .... -....-+|.||-.+++++-... -|-+++-++.+- -.++..+.. .. ....|||-+...+.-.+.
T Consensus 411 I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r---~IDv~~~~~~q~--v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s 485 (498)
T KOG4328|consen 411 IPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPR---PIDVFDGNGGQM--VCELHDPESSTIPSVNEFHPMRDTLAAGGNS 485 (498)
T ss_pred eeccCcccccccchhheeCCCccEEEEeccCc---ceeEEcCCCCEE--eeeccCccccccccceeecccccceeccCCc
Confidence 11 0001 1245678999999999998877 698998877431 112211111 12 457899987643333333
Q ss_pred CCcE
Q 000731 341 DGQI 344 (1325)
Q Consensus 341 ~g~~ 344 (1325)
.|.+
T Consensus 486 ~Gki 489 (498)
T KOG4328|consen 486 SGKI 489 (498)
T ss_pred cceE
Confidence 4433
No 215
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.17 E-value=1e-07 Score=113.22 Aligned_cols=250 Identities=17% Similarity=0.183 Sum_probs=157.2
Q ss_pred ceeEEeeecCCCEEEEEeCC----CcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEE-CC
Q 000731 22 ILQFSALDIEQNRLFFASSA----NNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGT-SS 96 (1325)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~----~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~V~~v~~spdg~~La~as-~d 96 (1325)
.+..+++|++++.||++++. +.|..|.....++.. ..+.+.+. .+..+..++++|+++.|.++. .+
T Consensus 38 ~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L-~~~~~~~~--------~g~~p~~i~~~~~g~~l~vany~~ 108 (345)
T PF10282_consen 38 NPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTL-TLLNSVPS--------GGSSPCHIAVDPDGRFLYVANYGG 108 (345)
T ss_dssp SECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEE-EEEEEEEE--------SSSCEEEEEECTTSSEEEEEETTT
T ss_pred CCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCccee-EEeeeecc--------CCCCcEEEEEecCCCEEEEEEccC
Confidence 67889999999999999774 467777763122222 11221111 256788999999999999886 69
Q ss_pred CcEEEEeCCC-CeEE-E---e---c-------eecCcEEEEEEcCCCCeEEEEe-CCccEEEEeecCce--eee---eec
Q 000731 97 GLLLLHSVDG-NATE-V---V---G-------RVEGGVRFISPSPDGDLLGVTT-GFGQILVMTHDWDL--LYE---NPL 155 (1325)
Q Consensus 97 G~I~lw~~~~-~~~e-~---v---g-------~~~~~I~~~awSPDG~~LA~~s-~dgtV~l~s~~~d~--~~e---~~l 155 (1325)
|+|.+++++. +.+. . + | .......++.|+|||+.|.++. +...|.++..+-+. +.. ..+
T Consensus 109 g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~ 188 (345)
T PF10282_consen 109 GSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKV 188 (345)
T ss_dssp TEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEEC
T ss_pred CeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeecccc
Confidence 9999999875 4432 1 1 1 0124578999999999888764 34467666432211 211 111
Q ss_pred cccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECC--CCceeee-----e-cCCC--Cce
Q 000731 156 EELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERD--SGTLQAS-----S-ELKA--FMG 225 (1325)
Q Consensus 156 ~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~--~G~l~~t-----~-e~~~--~~v 225 (1325)
. ...+-..+.|+|||+++- +.. ...++|.+++.. +|.+... . +... ...
T Consensus 189 ~---------------~G~GPRh~~f~pdg~~~Y-v~~-----e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 247 (345)
T PF10282_consen 189 P---------------PGSGPRHLAFSPDGKYAY-VVN-----ELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAP 247 (345)
T ss_dssp S---------------TTSSEEEEEE-TTSSEEE-EEE-----TTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSE
T ss_pred c---------------cCCCCcEEEEcCCcCEEE-Eec-----CCCCcEEEEeecccCCceeEEEEeeeccccccccCCc
Confidence 1 123457899999999876 442 235788888875 5654332 1 1111 146
Q ss_pred eEEEEccCCCeEEEEecCCCCCCCCeEEEEeCC---CceEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEE
Q 000731 226 AVLEWMPSGANIAAVYDRKSENKCPSIVFYERN---GLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKIC 302 (1325)
Q Consensus 226 ~~lawsPdG~~IAs~~~d~~~~~~~~V~~~e~n---Gl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW 302 (1325)
..|+++|||++|.++.+. ...|.+|+.+ |.....-.++.. ......++++|||++|+++..+. +.|.+|
T Consensus 248 ~~i~ispdg~~lyvsnr~-----~~sI~vf~~d~~~g~l~~~~~~~~~-G~~Pr~~~~s~~g~~l~Va~~~s--~~v~vf 319 (345)
T PF10282_consen 248 AEIAISPDGRFLYVSNRG-----SNSISVFDLDPATGTLTLVQTVPTG-GKFPRHFAFSPDGRYLYVANQDS--NTVSVF 319 (345)
T ss_dssp EEEEE-TTSSEEEEEECT-----TTEEEEEEECTTTTTEEEEEEEEES-SSSEEEEEE-TTSSEEEEEETTT--TEEEEE
T ss_pred eeEEEecCCCEEEEEecc-----CCEEEEEEEecCCCceEEEEEEeCC-CCCccEEEEeCCCCEEEEEecCC--CeEEEE
Confidence 789999999999888775 4689999863 433221122211 23478999999999999998765 478888
Q ss_pred Eee--CCee
Q 000731 303 FFS--NNHW 309 (1325)
Q Consensus 303 ~~~--n~~w 309 (1325)
+++ +..+
T Consensus 320 ~~d~~tG~l 328 (345)
T PF10282_consen 320 DIDPDTGKL 328 (345)
T ss_dssp EEETTTTEE
T ss_pred EEeCCCCcE
Confidence 875 4443
No 216
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.16 E-value=1.1e-07 Score=112.76 Aligned_cols=283 Identities=15% Similarity=0.141 Sum_probs=165.3
Q ss_pred EEEEEeCC----CcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEEC----CCcEEEEeCC
Q 000731 34 RLFFASSA----NNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTS----SGLLLLHSVD 105 (1325)
Q Consensus 34 ~l~~~s~~----~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~V~~v~~spdg~~La~as~----dG~I~lw~~~ 105 (1325)
++|+++-+ +.|+.++++..+++ +.... . +.....+..++++|+++.|.++.+ +|.|..|..+
T Consensus 1 ~~~vgsy~~~~~~gI~~~~~d~~~g~--l~~~~------~--~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~ 70 (345)
T PF10282_consen 1 TLYVGSYTNGKGGGIYVFRFDEETGT--LTLVQ------T--VAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRID 70 (345)
T ss_dssp EEEEEECCSSSSTEEEEEEEETTTTE--EEEEE------E--EEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEE
T ss_pred CEEEEcCCCCCCCcEEEEEEcCCCCC--ceEee------e--ecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEEC
Confidence 35666554 47888777323333 22110 0 111356788999999999999987 4688887765
Q ss_pred C--CeEEEecee---cCcEEEEEEcCCCCeEEEEe-CCccEEEEeecC--ceeeeeeccccCCCceeccCccccCCCCeE
Q 000731 106 G--NATEVVGRV---EGGVRFISPSPDGDLLGVTT-GFGQILVMTHDW--DLLYENPLEELAEGFDVHEPELSSSFSFKS 177 (1325)
Q Consensus 106 ~--~~~e~vg~~---~~~I~~~awSPDG~~LA~~s-~dgtV~l~s~~~--d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~ 177 (1325)
. +.++.++.. ..+-..++.+|||+.|.++. .+|+|.++..+- .+.............+....| ......
T Consensus 71 ~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq---~~~h~H 147 (345)
T PF10282_consen 71 PDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQ---EGPHPH 147 (345)
T ss_dssp TTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTT---SSTCEE
T ss_pred CCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCccccc---ccccce
Confidence 4 566544432 24467899999999999997 588888875432 111111110000000000001 113457
Q ss_pred EEEEecCCcEEEEeeccccccCCCCEEEEEECCCCc--eee----eecCCCCceeEEEEccCCCeEEEEecCCCCCCCCe
Q 000731 178 PISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGT--LQA----SSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPS 251 (1325)
Q Consensus 178 ~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~--l~~----t~e~~~~~v~~lawsPdG~~IAs~~~d~~~~~~~~ 251 (1325)
++.|+|||+++. +... +...|.+|+.+.+. +.. ......| -..++|+|||+++...... .+.
T Consensus 148 ~v~~~pdg~~v~-v~dl-----G~D~v~~~~~~~~~~~l~~~~~~~~~~G~G-PRh~~f~pdg~~~Yv~~e~-----s~~ 215 (345)
T PF10282_consen 148 QVVFSPDGRFVY-VPDL-----GADRVYVYDIDDDTGKLTPVDSIKVPPGSG-PRHLAFSPDGKYAYVVNEL-----SNT 215 (345)
T ss_dssp EEEE-TTSSEEE-EEET-----TTTEEEEEEE-TTS-TEEEEEEEECSTTSS-EEEEEE-TTSSEEEEEETT-----TTE
T ss_pred eEEECCCCCEEE-EEec-----CCCEEEEEEEeCCCceEEEeeccccccCCC-CcEEEEcCCcCEEEEecCC-----CCc
Confidence 899999999988 5532 34688998875443 533 1222333 3789999999999888765 467
Q ss_pred EEEEeCC---CceEEEEEec-c----CCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEee--CCeeEEEeEEEEecCC
Q 000731 252 IVFYERN---GLERSSFDIN-E----QIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFS--NNHWYLKYEIRYLRRD 321 (1325)
Q Consensus 252 V~~~e~n---Gl~~~~f~l~-~----~~~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~--n~~wylkqel~~~~~~ 321 (1325)
|..|+.+ |.....-.+. . ........|++||||+.|-++.... ++|-++++. +....+.+.+......
T Consensus 216 v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~--~sI~vf~~d~~~g~l~~~~~~~~~G~~ 293 (345)
T PF10282_consen 216 VSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGS--NSISVFDLDPATGTLTLVQTVPTGGKF 293 (345)
T ss_dssp EEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTT--TEEEEEEECTTTTTEEEEEEEEESSSS
T ss_pred EEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccC--CEEEEEEEecCCCceEEEEEEeCCCCC
Confidence 8888754 3221111222 1 1123688999999999998876543 589999984 3343334444443233
Q ss_pred cEEEEEccCCCcEEEEEec-CCcE
Q 000731 322 GIRFMWHPTKPLQLICWTL-DGQI 344 (1325)
Q Consensus 322 ~~~v~Wsp~~~~~L~~~~~-~g~~ 344 (1325)
+..+.++|++.. |.+.++ ++.+
T Consensus 294 Pr~~~~s~~g~~-l~Va~~~s~~v 316 (345)
T PF10282_consen 294 PRHFAFSPDGRY-LYVANQDSNTV 316 (345)
T ss_dssp EEEEEE-TTSSE-EEEEETTTTEE
T ss_pred ccEEEEeCCCCE-EEEEecCCCeE
Confidence 588999999876 555554 4444
No 217
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.16 E-value=6.5e-10 Score=129.21 Aligned_cols=170 Identities=19% Similarity=0.290 Sum_probs=117.6
Q ss_pred CCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCE-EEEEECCCcEEEEeCC-----
Q 000731 32 QNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEA-LIVGTSSGLLLLHSVD----- 105 (1325)
Q Consensus 32 ~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~V~~v~~spdg~~-La~as~dG~I~lw~~~----- 105 (1325)
+--|.++-..++++.+|+ ...+ ++.|- .+........|++|.|.|.++. +.++-.+|.+.+||..
T Consensus 185 g~dllIGf~tGqvq~idp--~~~~----~sklf---ne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~ 255 (636)
T KOG2394|consen 185 GLDLLIGFTTGQVQLIDP--INFE----VSKLF---NEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGA 255 (636)
T ss_pred CcceEEeeccCceEEecc--hhhH----HHHhh---hhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccC
Confidence 445666666677777777 3322 22211 1112223478999999997654 4456789999999652
Q ss_pred ----------CCeEEE---ec-----------eecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeeeccccCCC
Q 000731 106 ----------GNATEV---VG-----------RVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEG 161 (1325)
Q Consensus 106 ----------~~~~e~---vg-----------~~~~~I~~~awSPDG~~LA~~s~dgtV~l~s~~~d~~~e~~l~~~~~~ 161 (1325)
+.+..+ .+ .-.++|+..+|||||+.||+++.||.++|++ |+. +.-+..
T Consensus 256 t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~--fdt--~eLlg~---- 327 (636)
T KOG2394|consen 256 TAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFD--FDT--QELLGV---- 327 (636)
T ss_pred CCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEee--ccH--HHHHHH----
Confidence 111110 00 1146899999999999999999999998853 222 111110
Q ss_pred ceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeecCCCCceeEEEEcc
Q 000731 162 FDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMP 232 (1325)
Q Consensus 162 ~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~~~v~~lawsP 232 (1325)
++.--++..+++|||||+|+| ++ ++|--|.||...+++.+...++|..||..|+|-|
T Consensus 328 -------mkSYFGGLLCvcWSPDGKyIv-tG------GEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 328 -------MKSYFGGLLCVCWSPDGKYIV-TG------GEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred -------HHhhccceEEEEEcCCccEEE-ec------CCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence 111225678999999999999 66 3567999999999999999999999999999998
No 218
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.15 E-value=1.3e-07 Score=106.93 Aligned_cols=308 Identities=17% Similarity=0.158 Sum_probs=182.1
Q ss_pred EEEEEeC----CCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECC---CcEEEEeCC-
Q 000731 34 RLFFASS----ANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSS---GLLLLHSVD- 105 (1325)
Q Consensus 34 ~l~~~s~----~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~V~~v~~spdg~~La~as~d---G~I~lw~~~- 105 (1325)
.+|+++- +.+|+.|++ .++.+.....+ +... .+.++-++|+|+++.|.++-.+ |.|.-|..+
T Consensus 4 ~~YiGtyT~~~s~gI~v~~l--d~~~g~l~~~~----~v~~----~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~ 73 (346)
T COG2706 4 TVYIGTYTKRESQGIYVFNL--DTKTGELSLLQ----LVAE----LGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDP 73 (346)
T ss_pred EEEEeeecccCCCceEEEEE--eCcccccchhh----hccc----cCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcC
Confidence 4677743 457999999 44443222211 1111 3578999999999999877554 667775554
Q ss_pred -CCeEEEecee---cCcEEEEEEcCCCCeEEEEeC-CccEEEEee--cCceeeeeeccccCCCceeccCccccCCCCeEE
Q 000731 106 -GNATEVVGRV---EGGVRFISPSPDGDLLGVTTG-FGQILVMTH--DWDLLYENPLEELAEGFDVHEPELSSSFSFKSP 178 (1325)
Q Consensus 106 -~~~~e~vg~~---~~~I~~~awSPDG~~LA~~s~-dgtV~l~s~--~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~ 178 (1325)
++++..++.. ..+-.-++.++||+.|.++.- .|.|.+.-. ++.+..-...-.+. +.-..+.|-+ ..+..
T Consensus 74 ~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~-g~~p~~rQ~~---~h~H~ 149 (346)
T COG2706 74 DDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHT-GSGPHERQES---PHVHS 149 (346)
T ss_pred CCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecC-CCCCCccccC---Cccce
Confidence 4666544321 123378999999999999974 456655421 11111110000000 0000011211 12567
Q ss_pred EEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeee----cCCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEE
Q 000731 179 ISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASS----ELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVF 254 (1325)
Q Consensus 179 isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~----e~~~~~v~~lawsPdG~~IAs~~~d~~~~~~~~V~~ 254 (1325)
.-+.|||+|++ +-.. +.-+|.+|+.++|.+...- .+..|+ ..|+|+|+|++....... ..+|.+
T Consensus 150 a~~tP~~~~l~-v~DL-----G~Dri~~y~~~dg~L~~~~~~~v~~G~GP-RHi~FHpn~k~aY~v~EL-----~stV~v 217 (346)
T COG2706 150 ANFTPDGRYLV-VPDL-----GTDRIFLYDLDDGKLTPADPAEVKPGAGP-RHIVFHPNGKYAYLVNEL-----NSTVDV 217 (346)
T ss_pred eeeCCCCCEEE-Eeec-----CCceEEEEEcccCccccccccccCCCCCc-ceEEEcCCCcEEEEEecc-----CCEEEE
Confidence 88999999998 4332 3357899999899886642 233444 889999999999888776 468999
Q ss_pred EeCCCceEEEEE-------ec--cCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeEEEeE--EEEecCCcE
Q 000731 255 YERNGLERSSFD-------IN--EQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYE--IRYLRRDGI 323 (1325)
Q Consensus 255 ~e~nGl~~~~f~-------l~--~~~~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~n~~wylkqe--l~~~~~~~~ 323 (1325)
|+-|+. .++|. ++ -++..+.-+|..||||+.|-+.-. ..+.|-++.+...--.|.-. .......+.
T Consensus 218 ~~y~~~-~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNR--g~dsI~~f~V~~~~g~L~~~~~~~teg~~PR 294 (346)
T COG2706 218 LEYNPA-VGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNR--GHDSIAVFSVDPDGGKLELVGITPTEGQFPR 294 (346)
T ss_pred EEEcCC-CceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecC--CCCeEEEEEEcCCCCEEEEEEEeccCCcCCc
Confidence 987664 34332 22 123467889999999999987543 23467777776431111100 000011235
Q ss_pred EEEEccCCCcEEEEEecCCcEEEEEEEEeeeeCCCeeEEEEeCCEEEEeecCC-cCCCCCcee
Q 000731 324 RFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSL-SLMPPPMYL 385 (1325)
Q Consensus 324 ~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDG~~l~lt~l~~-~~vPpPm~~ 385 (1325)
.+.++|.+.. |.+..++ +|.-.+..+|..+=.|+.+.. ..+|.|+|.
T Consensus 295 ~F~i~~~g~~-Liaa~q~--------------sd~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv 342 (346)
T COG2706 295 DFNINPSGRF-LIAANQK--------------SDNITVFERDKETGRLTLLGRYAVVPEPVCV 342 (346)
T ss_pred cceeCCCCCE-EEEEccC--------------CCcEEEEEEcCCCceEEecccccCCCCcEEE
Confidence 5666666654 3333332 233445566777767776654 567888885
No 219
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.15 E-value=6.5e-09 Score=126.00 Aligned_cols=203 Identities=9% Similarity=0.010 Sum_probs=124.3
Q ss_pred CCEEEEEEccCCCE-EEEEECC---CcEEEEeCCCCeEEEeceecCcEEEEEEcCCCCeEEEEeC-C--ccEEEEeecCc
Q 000731 76 DSITAFDYLMEKEA-LIVGTSS---GLLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTG-F--GQILVMTHDWD 148 (1325)
Q Consensus 76 ~~V~~v~~spdg~~-La~as~d---G~I~lw~~~~~~~e~vg~~~~~I~~~awSPDG~~LA~~s~-d--gtV~l~s~~~d 148 (1325)
+.+.+-.|||||+. ++..+.. .+|.++|+.+++.+.+....+.+.+.+|||||+.||.... + ..|.+++....
T Consensus 188 ~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g 267 (419)
T PRK04043 188 GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK 267 (419)
T ss_pred CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence 35778999999985 6654443 4688899998877655444566778999999998887643 3 34544442211
Q ss_pred eeeeeeccccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeecCCCCceeEE
Q 000731 149 LLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVL 228 (1325)
Q Consensus 149 ~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~~~v~~l 228 (1325)
.. ..+... ........|+|||+.|+.++.. .+...|.+.|..+|+....... +. ...
T Consensus 268 ~~--~~LT~~--------------~~~d~~p~~SPDG~~I~F~Sdr----~g~~~Iy~~dl~~g~~~rlt~~--g~-~~~ 324 (419)
T PRK04043 268 TL--TQITNY--------------PGIDVNGNFVEDDKRIVFVSDR----LGYPNIFMKKLNSGSVEQVVFH--GK-NNS 324 (419)
T ss_pred cE--EEcccC--------------CCccCccEECCCCCEEEEEECC----CCCceEEEEECCCCCeEeCccC--CC-cCc
Confidence 11 111111 0112456899999999855532 2335788889977877444321 11 124
Q ss_pred EEccCCCeEEEEecCCCCC---CCCeEEEEeCCCceEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEee
Q 000731 229 EWMPSGANIAAVYDRKSEN---KCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFS 305 (1325)
Q Consensus 229 awsPdG~~IAs~~~d~~~~---~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~ 305 (1325)
+|||||+.||..+...... ....|.+.+..|..... |.. .......+|||||+.|+.....++...+.+.++.
T Consensus 325 ~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~--LT~--~~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~ 400 (419)
T PRK04043 325 SVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRR--LTA--NGVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLN 400 (419)
T ss_pred eECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEE--CCC--CCCcCCeEECCCCCEEEEEEccCCcEEEEEEecC
Confidence 8999999999887643211 12467777765433222 221 1223468999999999998776533234444443
No 220
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.13 E-value=2.7e-09 Score=119.11 Aligned_cols=252 Identities=12% Similarity=0.095 Sum_probs=151.1
Q ss_pred CcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeeeccccCCCceeccCccccCCCCeEEEEEecCCc-EEEEeeccc
Q 000731 117 GGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGK-YFATLSEFC 195 (1325)
Q Consensus 117 ~~I~~~awSPDG~~LA~~s~dgtV~l~s~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~-~lAtvss~d 195 (1325)
.-+..++|.|-=--+|+++.|.+|++.++.-+..... .. + ....+.+++|+|-+. -|| ++.
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~ksst~pt~L--ks------~-------sQrnvtclawRPlsasela-vgC-- 160 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSSTCPTKL--KS------V-------SQRNVTCLAWRPLSASELA-VGC-- 160 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCCCCCcee--cc------h-------hhcceeEEEeccCCcceee-eee--
Confidence 3477899999656678888899998887654322111 11 1 113568999999885 455 653
Q ss_pred cccCCCCEEEEEECC-CCceee-----------ee-cCCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeCCCceE
Q 000731 196 NSSKLHKRLKVWERD-SGTLQA-----------SS-ELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLER 262 (1325)
Q Consensus 196 ~~~~~d~~irVWd~~-~G~l~~-----------t~-e~~~~~v~~lawsPdG~~IAs~~~d~~~~~~~~V~~~e~nGl~~ 262 (1325)
..-|.||... ++..-. .+ .+...+|.++.|.|||..+++++.+ +..|.+||.+-..-
T Consensus 161 -----r~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~g-----sssi~iWdpdtg~~ 230 (445)
T KOG2139|consen 161 -----RAGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFG-----SSSIMIWDPDTGQK 230 (445)
T ss_pred -----cceeEEEEcCcccccccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccC-----cceEEEEcCCCCCc
Confidence 2568999752 221111 01 1223568999999999999999886 46899999753211
Q ss_pred EEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeEEEeEEEEecCCcEEEEEccCCCcEEEEEecCC
Q 000731 263 SSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDG 342 (1325)
Q Consensus 263 ~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~n~~wylkqel~~~~~~~~~v~Wsp~~~~~L~~~~~~g 342 (1325)
. .|+-.+-+.+.-|.|||||.+|-.+.-|+ +.++|+..+.-|..++.+ .+.....-.|+|+|...|.... |
T Consensus 231 ~--pL~~~glgg~slLkwSPdgd~lfaAt~da---vfrlw~e~q~wt~erw~l--gsgrvqtacWspcGsfLLf~~s--g 301 (445)
T KOG2139|consen 231 I--PLIPKGLGGFSLLKWSPDGDVLFAATCDA---VFRLWQENQSWTKERWIL--GSGRVQTACWSPCGSFLLFACS--G 301 (445)
T ss_pred c--cccccCCCceeeEEEcCCCCEEEEecccc---eeeeehhcccceecceec--cCCceeeeeecCCCCEEEEEEc--C
Confidence 1 12211235688999999999999999998 999998776544333332 2233367889999987555554 4
Q ss_pred cEEEEEEEEeeeeCCCeeEEEEeCCEE-EEeecCCcCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEEC
Q 000731 343 QITTYNFIWTTAVMENSTALVIDGSKI-LVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILS 413 (1325)
Q Consensus 343 ~~~~~~~~~~~~~~d~~~v~viDG~~l-~lt~l~~~~vPpPm~~~~l~~~~~V~~VaFSpdg~~~~LAs~s~ 413 (1325)
+-..|...++-.+.. .-.+.+-+.+ ++-+|....+-.+ ++ -.-+.+.++||.|.| .+||+.-.
T Consensus 302 sp~lysl~f~~~~~~--~~~~~~~k~~lliaDL~e~ti~ag---~~-l~cgeaq~lawDpsG--eyLav~fK 365 (445)
T KOG2139|consen 302 SPRLYSLTFDGEDSV--FLRPQSIKRVLLIADLQEVTICAG---QR-LCCGEAQCLAWDPSG--EYLAVIFK 365 (445)
T ss_pred CceEEEEeecCCCcc--ccCcccceeeeeeccchhhhhhcC---cc-cccCccceeeECCCC--CEEEEEEc
Confidence 444454444322100 0001111121 1222221111000 00 124568899999999 89998743
No 221
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.11 E-value=1.7e-08 Score=123.89 Aligned_cols=268 Identities=18% Similarity=0.154 Sum_probs=165.8
Q ss_pred CCcEEEEeCCCC-eEEEeceecCcEEEEEEcCC-CCeEEEEeCCccEEEEeec--Cce-eeeeeccccCCCceeccCccc
Q 000731 96 SGLLLLHSVDGN-ATEVVGRVEGGVRFISPSPD-GDLLGVTTGFGQILVMTHD--WDL-LYENPLEELAEGFDVHEPELS 170 (1325)
Q Consensus 96 dG~I~lw~~~~~-~~e~vg~~~~~I~~~awSPD-G~~LA~~s~dgtV~l~s~~--~d~-~~e~~l~~~~~~~~Vs~tqf~ 170 (1325)
++.+.+||.... ..+.+=.....|.|+.|+|. ..+||.|+.+|+|.+|+-. .++ .+..+. +-+
T Consensus 221 ~~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~------------~~~ 288 (555)
T KOG1587|consen 221 DGVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSA------------LEV 288 (555)
T ss_pred CceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCccccc------------ccc
Confidence 357899998764 44544445788999999996 5667777889999998521 111 122221 122
Q ss_pred cCCCCeEEEEEecCCc--EEEEeeccccccCCCCEEEEEECCC------Cceeeeec------CCCCceeEEEEccCC-C
Q 000731 171 SSFSFKSPISWRGDGK--YFATLSEFCNSSKLHKRLKVWERDS------GTLQASSE------LKAFMGAVLEWMPSG-A 235 (1325)
Q Consensus 171 ~~~~~i~~isWspDG~--~lAtvss~d~~~~~d~~irVWd~~~------G~l~~t~e------~~~~~v~~lawsPdG-~ 235 (1325)
.|.+.++.+.|-.+-. -|+++++ ||.|..|+.+- +.+..... .....+.+++|.|.- +
T Consensus 289 sh~~~v~~vvW~~~~~~~~f~s~ss-------DG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~ 361 (555)
T KOG1587|consen 289 SHSEPVTAVVWLQNEHNTEFFSLSS-------DGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPN 361 (555)
T ss_pred cCCcCeEEEEEeccCCCCceEEEec-------CCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCc
Confidence 5677889999965433 3663442 58999998731 11111111 112235788898854 3
Q ss_pred eEEEEecCCCCCCCCeEEEEeCCCceEEE---EEec---cCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEee-CCe
Q 000731 236 NIAAVYDRKSENKCPSIVFYERNGLERSS---FDIN---EQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFS-NNH 308 (1325)
Q Consensus 236 ~IAs~~~d~~~~~~~~V~~~e~nGl~~~~---f~l~---~~~~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~-n~~ 308 (1325)
....|++. +.|---.+.|.+.+. |... ..+.+.|..+.|||=+..+...+.|- +|+||... +..
T Consensus 362 ~FiVGTe~------G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW---~vriWs~~~~~~ 432 (555)
T KOG1587|consen 362 HFIVGTEE------GKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDW---TVRIWSEDVIAS 432 (555)
T ss_pred eEEEEcCC------cEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccc---eeEeccccCCCC
Confidence 34445443 445444666666553 1111 22457899999999998766666577 89999987 432
Q ss_pred eEEEeEEEEe-cCC-cEEEEEccCCCcEEEEEecCCcEEEEEEEEeeeeCCCeeEEEEeCCEEEEeecCCcCCCCCceee
Q 000731 309 WYLKYEIRYL-RRD-GIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLF 386 (1325)
Q Consensus 309 wylkqel~~~-~~~-~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDG~~l~lt~l~~~~vPpPm~~~ 386 (1325)
- .+.+. ..+ .+.++|||..|..+++...+|.+ .+|+|... ..-|++..
T Consensus 433 P----l~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l-------------------------~iWDLl~~-~~~Pv~s~ 482 (555)
T KOG1587|consen 433 P----LLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNL-------------------------DIWDLLQD-DEEPVLSQ 482 (555)
T ss_pred c----chhhhhccceeeeeEEcCcCceEEEEEcCCCce-------------------------ehhhhhcc-ccCCcccc
Confidence 1 11111 112 37799999998766666655554 34444322 22344432
Q ss_pred eecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCC
Q 000731 387 SLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPA 424 (1325)
Q Consensus 387 ~l~~~~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~~~~ 424 (1325)
.+. ....+.+.|+++| +.||+|...|++++|++..
T Consensus 483 ~~~-~~~l~~~~~s~~g--~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 483 KVC-SPALTRVRWSPNG--KLLAVGDANGTTHILKLSE 517 (555)
T ss_pred ccc-ccccceeecCCCC--cEEEEecCCCcEEEEEcCc
Confidence 222 3344678899989 9999999999999999964
No 222
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.10 E-value=1.1e-08 Score=113.36 Aligned_cols=230 Identities=15% Similarity=0.159 Sum_probs=146.5
Q ss_pred CCEEEEEEccCCC----EEEEEECCCcEEEEeCCCCeEE--EeceecCcEEEEEEcCCC-CeEEEEeCCccEEEEeecCc
Q 000731 76 DSITAFDYLMEKE----ALIVGTSSGLLLLHSVDGNATE--VVGRVEGGVRFISPSPDG-DLLGVTTGFGQILVMTHDWD 148 (1325)
Q Consensus 76 ~~V~~v~~spdg~----~La~as~dG~I~lw~~~~~~~e--~vg~~~~~I~~~awSPDG-~~LA~~s~dgtV~l~s~~~d 148 (1325)
..-..++|+-|.. .||+|+.-|-|++.|+..+++. .+| |.+.|+.+.+-|+- ++|+++|.|.+|++|+..
T Consensus 90 Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~g-hG~sINeik~~p~~~qlvls~SkD~svRlwnI~-- 166 (385)
T KOG1034|consen 90 ESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRG-HGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQ-- 166 (385)
T ss_pred cceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceec-cCccchhhhcCCCCCcEEEEecCCceEEEEecc--
Confidence 3456778877654 7999999999999999887763 566 47889999999994 689999999999887643
Q ss_pred eeeeeeccccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeecCCCCceeEE
Q 000731 149 LLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVL 228 (1325)
Q Consensus 149 ~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~~~v~~l 228 (1325)
++.++--.. -.-+|-+.|.+|.|++||.+|| ++ +-|.++++|+...-+. +..++.++
T Consensus 167 --~~~Cv~VfG--------G~egHrdeVLSvD~~~~gd~i~-Sc------GmDhslk~W~l~~~~f------~~~lE~s~ 223 (385)
T KOG1034|consen 167 --TDVCVAVFG--------GVEGHRDEVLSVDFSLDGDRIA-SC------GMDHSLKLWRLNVKEF------KNKLELSI 223 (385)
T ss_pred --CCeEEEEec--------ccccccCcEEEEEEcCCCCeee-cc------CCcceEEEEecChhHH------hhhhhhhc
Confidence 333221111 0016778899999999999999 44 3468999999832221 22333445
Q ss_pred EEccCCCe--------------------------------EEEEecCCCCCCCCeEEEEeCCCce---------------
Q 000731 229 EWMPSGAN--------------------------------IAAVYDRKSENKCPSIVFYERNGLE--------------- 261 (1325)
Q Consensus 229 awsPdG~~--------------------------------IAs~~~d~~~~~~~~V~~~e~nGl~--------------- 261 (1325)
.|+|++.. |.|-+. .+.|.+|...-+.
T Consensus 224 ~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~gd~ilSksc------enaI~~w~pgkl~e~~~~vkp~es~~Ti 297 (385)
T KOG1034|consen 224 TYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFGDFILSKSC------ENAIVCWKPGKLEESIHNVKPPESATTI 297 (385)
T ss_pred ccCCCCccCcCCccccccccccccccccchHHHHHHHhhheeeccc------CceEEEEecchhhhhhhccCCCccceee
Confidence 55555543 333332 4679999752110
Q ss_pred EEEEEeccCCCCcEE--EEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeEEEeEEEEecCCc--EEEEEccCCCcEEEE
Q 000731 262 RSSFDINEQIDSTVE--LLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDG--IRFMWHPTKPLQLIC 337 (1325)
Q Consensus 262 ~~~f~l~~~~~~~V~--~laWSpDg~~LAs~~~d~~~~~VqLW~~~n~~wylkqel~~~~~~~--~~v~Wsp~~~~~L~~ 337 (1325)
.++|.++ ...|+ ..+|.|=+++||.+...+ .|.+|++.|..--..-++.-+.... ...+|+.++.. |.+
T Consensus 298 ~~~~~~~---~c~iWfirf~~d~~~~~la~gnq~g---~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~-lv~ 370 (385)
T KOG1034|consen 298 LGEFDYP---MCDIWFIRFAFDPWQKMLALGNQSG---KVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSI-LVL 370 (385)
T ss_pred eeEeccC---ccceEEEEEeecHHHHHHhhccCCC---cEEEEECCCCCCccCceEEeccccceeeeeeecccCcE-EEE
Confidence 1112111 12344 445667799999999887 8999999876432112222221111 44567766654 444
Q ss_pred EecCCcE
Q 000731 338 WTLDGQI 344 (1325)
Q Consensus 338 ~~~~g~~ 344 (1325)
.+.+|.+
T Consensus 371 vcdd~~V 377 (385)
T KOG1034|consen 371 VCDDGTV 377 (385)
T ss_pred EeCCCcE
Confidence 4555654
No 223
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.07 E-value=8.9e-08 Score=114.20 Aligned_cols=324 Identities=15% Similarity=0.134 Sum_probs=168.9
Q ss_pred CEEEEE-eCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEEEeCCCCeEE-
Q 000731 33 NRLFFA-SSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATE- 110 (1325)
Q Consensus 33 ~~l~~~-s~~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~V~~v~~spdg~~La~as~dG~I~lw~~~~~~~e- 110 (1325)
+.+|++ .+++.+-.+|. .+++. +.+++.+ ++....+.|+|||+.+.+++.||.|.++|+.+.++-
T Consensus 6 ~l~~V~~~~~~~v~viD~--~t~~~---~~~i~~~--------~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~ 72 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDG--ATNKV---VARIPTG--------GAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVA 72 (369)
T ss_dssp GEEEEEEGGGTEEEEEET--TT-SE---EEEEE-S--------TTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEE
T ss_pred cEEEEEecCCCEEEEEEC--CCCeE---EEEEcCC--------CCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEE
Confidence 444444 34667778887 55554 2222222 122356789999999999999999999999987642
Q ss_pred EeceecCcEEEEEEcCCCCeEEEEe-CCccEEEEe-ecCceeeeeeccccCCCceeccCccccCCCCeEEEEEecCCcEE
Q 000731 111 VVGRVEGGVRFISPSPDGDLLGVTT-GFGQILVMT-HDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYF 188 (1325)
Q Consensus 111 ~vg~~~~~I~~~awSPDG~~LA~~s-~dgtV~l~s-~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~l 188 (1325)
.+. ....-.++++||||++|+++. .+++|.+++ ...+++..++....... ....++..|.-+|++..|
T Consensus 73 ~i~-~G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~---------~~~~Rv~aIv~s~~~~~f 142 (369)
T PF02239_consen 73 TIK-VGGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVD---------GPESRVAAIVASPGRPEF 142 (369)
T ss_dssp EEE--SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TT---------TS---EEEEEE-SSSSEE
T ss_pred EEe-cCCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeeccccccccc---------ccCCCceeEEecCCCCEE
Confidence 222 234568899999999999886 688999987 66777776655432200 012456788889999877
Q ss_pred EEeeccccccCCCCEEEEEECCCCc-eeeeecCCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeCC-CceEEEEE
Q 000731 189 ATLSEFCNSSKLHKRLKVWERDSGT-LQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERN-GLERSSFD 266 (1325)
Q Consensus 189 Atvss~d~~~~~d~~irVWd~~~G~-l~~t~e~~~~~v~~lawsPdG~~IAs~~~d~~~~~~~~V~~~e~n-Gl~~~~f~ 266 (1325)
+ ++--+ .+.|-+-|..+.. +..+.......-+...|.|+|+++..+... .+.|.+++.. +.......
T Consensus 143 V-v~lkd-----~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~-----sn~i~viD~~~~k~v~~i~ 211 (369)
T PF02239_consen 143 V-VNLKD-----TGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANG-----SNKIAVIDTKTGKLVALID 211 (369)
T ss_dssp E-EEETT-----TTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGG-----GTEEEEEETTTTEEEEEEE
T ss_pred E-EEEcc-----CCeEEEEEeccccccceeeecccccccccccCcccceeeecccc-----cceeEEEeeccceEEEEee
Confidence 6 55322 3566666764443 222333344445789999999987665443 2467777632 22211111
Q ss_pred e-ccCCCCcEE-------EEEEc--cCCCee-EEEEccCCCCeEEEEEeeCCeeEEEeEEEEecCCcEEEEEccCCCcEE
Q 000731 267 I-NEQIDSTVE-------LLKWN--CMSDLL-AAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQL 335 (1325)
Q Consensus 267 l-~~~~~~~V~-------~laWS--pDg~~L-As~~~d~~~~~VqLW~~~n~~wylkqel~~~~~~~~~v~Wsp~~~~~L 335 (1325)
. +.++...+. ...|. -.+... ...+.+ .+.+|+..+ |-..+++... ..+..+..||++++ +
T Consensus 212 ~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~----~v~v~d~~~--wkvv~~I~~~-G~glFi~thP~s~~-v 283 (369)
T PF02239_consen 212 TGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTD----PVSVHDDYA--WKVVKTIPTQ-GGGLFIKTHPDSRY-V 283 (369)
T ss_dssp -SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE------TTT-STTTB--TSEEEEEE-S-SSS--EE--TT-SE-E
T ss_pred ccccccccccccccCCCcceEEeeccccceecccccCC----ccccchhhc--CeEEEEEECC-CCcceeecCCCCcc-E
Confidence 1 011111111 12243 334443 333333 356677655 5455666653 23388888998874 2
Q ss_pred EEEecCCcEEEEEEEEeeeeCCCeeEEEEeCCEEEEeecCCcCCCCCceeeeec--CCCCEEEEEEecCCCCCEEEEEEC
Q 000731 336 ICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLK--FPTAVTEMAFYSKSSKNCLAAILS 413 (1325)
Q Consensus 336 ~~~~~~g~~~~~~~~~~~~~~d~~~v~viDG~~l~lt~l~~~~vPpPm~~~~l~--~~~~V~~VaFSpdg~~~~LAs~s~ 413 (1325)
.+-.. ...+...+.++|-.++.+. .++. ....+..+.|++||. ....|...
T Consensus 284 wvd~~-------------~~~~~~~v~viD~~tl~~~-------------~~i~~~~~~~~~h~ef~~dG~-~v~vS~~~ 336 (369)
T PF02239_consen 284 WVDTF-------------LNPDADTVQVIDKKTLKVV-------------KTITPGPGKRVVHMEFNPDGK-EVWVSVWD 336 (369)
T ss_dssp EEE-T-------------T-SSHT-EEEEECCGTEEE-------------E-HHHHHT--EEEEEE-TTSS-EEEEEEE-
T ss_pred Eeecc-------------CCCCCceEEEEECcCccee-------------EEEeccCCCcEeccEECCCCC-EEEEEEec
Confidence 22110 0122457788887765332 1221 122488999999992 34445444
Q ss_pred CC-cEEEEeCCCC
Q 000731 414 DG-CLCVVDLPAP 425 (1325)
Q Consensus 414 Dg-ti~lw~~~~~ 425 (1325)
++ .|.+||..+.
T Consensus 337 ~~~~i~v~D~~Tl 349 (369)
T PF02239_consen 337 GNGAIVVYDAKTL 349 (369)
T ss_dssp -TTEEEEEETTTT
T ss_pred CCCEEEEEECCCc
Confidence 44 8999998764
No 224
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.07 E-value=1.7e-07 Score=104.00 Aligned_cols=238 Identities=11% Similarity=0.093 Sum_probs=147.8
Q ss_pred eeEEeeecCCCEEEEEeCCC-cEEEEecccccccccceeeccccccccccCCC-CCCEEEEEEccCCCEEEEEECCC---
Q 000731 23 LQFSALDIEQNRLFFASSAN-NIYSAQLSSFQNERASIKTAISAEIEHIDLEP-GDSITAFDYLMEKEALIVGTSSG--- 97 (1325)
Q Consensus 23 ~~~~~~d~~~~~l~~~s~~~-~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~V~~v~~spdg~~La~as~dG--- 97 (1325)
..-.+|+-|..-..++.+++ .||-.|+ +.....- . +.+ |-.++-+ +--.+.||..+..+
T Consensus 8 ~lsvs~NQD~ScFava~~~Gfriyn~~P--~ke~~~r--~----------~~~~G~~~veM--LfR~N~laLVGGg~~pk 71 (346)
T KOG2111|consen 8 TLSVSFNQDHSCFAVATDTGFRIYNCDP--FKESASR--Q----------FIDGGFKIVEM--LFRSNYLALVGGGSRPK 71 (346)
T ss_pred eeEEEEccCCceEEEEecCceEEEecCc--hhhhhhh--c----------cccCchhhhhH--hhhhceEEEecCCCCCC
Confidence 34478888877777777777 3444444 3322100 0 101 1122222 33446677665333
Q ss_pred ----cEEEEeCCCCeEEEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeeeccccCCCceeccCccccCC
Q 000731 98 ----LLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSF 173 (1325)
Q Consensus 98 ----~I~lw~~~~~~~e~vg~~~~~I~~~awSPDG~~LA~~s~dgtV~l~s~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~ 173 (1325)
.|.+||-.-.++-+.-.....|.++.+++| .|+++.. ++|.+|+-.-++..-..+.+. ...
T Consensus 72 y~pNkviIWDD~k~~~i~el~f~~~I~~V~l~r~--riVvvl~-~~I~VytF~~n~k~l~~~et~------------~NP 136 (346)
T KOG2111|consen 72 YPPNKVIIWDDLKERCIIELSFNSEIKAVKLRRD--RIVVVLE-NKIYVYTFPDNPKLLHVIETR------------SNP 136 (346)
T ss_pred CCCceEEEEecccCcEEEEEEeccceeeEEEcCC--eEEEEec-CeEEEEEcCCChhheeeeecc------------cCC
Confidence 599999433222211235788999999988 6666665 478898743233211111111 011
Q ss_pred CCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCce--eeeecCCCCceeEEEEccCCCeEEEEecCCCCCCCCe
Q 000731 174 SFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTL--QASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPS 251 (1325)
Q Consensus 174 ~~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l--~~t~e~~~~~v~~lawsPdG~~IAs~~~d~~~~~~~~ 251 (1325)
.+.++++=.-+-.+|| .-+. ..|.|+|-|...-+. -..-..|++.+.+++.+-+|.+||++|..++ -
T Consensus 137 kGlC~~~~~~~k~~La-fPg~-----k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGT-----L 205 (346)
T KOG2111|consen 137 KGLCSLCPTSNKSLLA-FPGF-----KTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGT-----L 205 (346)
T ss_pred CceEeecCCCCceEEE-cCCC-----ccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcE-----E
Confidence 2345555444556777 4432 347899988733222 2445679999999999999999999998643 6
Q ss_pred EEEEe-CCCceEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeC
Q 000731 252 IVFYE-RNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSN 306 (1325)
Q Consensus 252 V~~~e-~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~n 306 (1325)
|++|+ .+|....||. ++.....|.+|+||||++.||+++..+ ||.++.+..
T Consensus 206 IRIFdt~~g~~l~E~R-RG~d~A~iy~iaFSp~~s~LavsSdKg---TlHiF~l~~ 257 (346)
T KOG2111|consen 206 IRIFDTEDGTLLQELR-RGVDRADIYCIAFSPNSSWLAVSSDKG---TLHIFSLRD 257 (346)
T ss_pred EEEEEcCCCcEeeeee-cCCchheEEEEEeCCCccEEEEEcCCC---eEEEEEeec
Confidence 89999 5787777653 233456799999999999999999888 899988753
No 225
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.07 E-value=1.4e-08 Score=122.97 Aligned_cols=205 Identities=11% Similarity=0.077 Sum_probs=126.6
Q ss_pred ceeEEeeecCCCE-EEEEeC---CCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEEC-C
Q 000731 22 ILQFSALDIEQNR-LFFASS---ANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTS-S 96 (1325)
Q Consensus 22 ~~~~~~~d~~~~~-l~~~s~---~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~V~~v~~spdg~~La~as~-d 96 (1325)
......|.+|++. +|+.+. ...|+.+|+ .+++. .. +.. ..+.+....|||||+.|+.... +
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl--~tg~~-~~-------lt~----~~g~~~~~~~SPDG~~la~~~~~~ 254 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNL--YTGKK-EK-------IAS----SQGMLVVSDVSKDGSKLLLTMAPK 254 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEEC--CCCcE-EE-------Eec----CCCcEEeeEECCCCCEEEEEEccC
Confidence 4567899999985 776544 347999999 55543 11 111 1244667889999998876543 3
Q ss_pred --CcEEEEeCCCCeEEEeceecCcEEEEEEcCCCCeEEEEeCC-c--cEEEEeecCceeeeeeccccCCCceeccCcccc
Q 000731 97 --GLLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGF-G--QILVMTHDWDLLYENPLEELAEGFDVHEPELSS 171 (1325)
Q Consensus 97 --G~I~lw~~~~~~~e~vg~~~~~I~~~awSPDG~~LA~~s~d-g--tV~l~s~~~d~~~e~~l~~~~~~~~Vs~tqf~~ 171 (1325)
++|.+++++++....+....+......|||||+.|+..+.. + .|.+++.+.... ..+. +.+
T Consensus 255 g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~--~rlt------------~~g 320 (419)
T PRK04043 255 GQPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSV--EQVV------------FHG 320 (419)
T ss_pred CCcEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCe--EeCc------------cCC
Confidence 46888898887765444333334467899999999999853 2 344433221110 0111 111
Q ss_pred CCCCeEEEEEecCCcEEEEeecccccc--CCCCEEEEEECCCCceeeeecCCCCceeEEEEccCCCeEEEEecCCCCCCC
Q 000731 172 SFSFKSPISWRGDGKYFATLSEFCNSS--KLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKC 249 (1325)
Q Consensus 172 ~~~~i~~isWspDG~~lAtvss~d~~~--~~d~~irVWd~~~G~l~~t~e~~~~~v~~lawsPdG~~IAs~~~d~~~~~~ 249 (1325)
. ...+|||||+++|.++.....+ .+...|.+.|.++|........ +.....+|+|||+.|+....... .
T Consensus 321 ~----~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~--~~~~~p~~SPDG~~I~f~~~~~~---~ 391 (419)
T PRK04043 321 K----NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTAN--GVNQFPRFSSDGGSIMFIKYLGN---Q 391 (419)
T ss_pred C----cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCCC--CCcCCeEECCCCCEEEEEEccCC---c
Confidence 1 2358999999999554321100 0124688889877776554432 33456899999999998876432 3
Q ss_pred CeEEEEeCCCceEE
Q 000731 250 PSIVFYERNGLERS 263 (1325)
Q Consensus 250 ~~V~~~e~nGl~~~ 263 (1325)
..+...+.+|....
T Consensus 392 ~~L~~~~l~g~~~~ 405 (419)
T PRK04043 392 SALGIIRLNYNKSF 405 (419)
T ss_pred EEEEEEecCCCeeE
Confidence 45777788885444
No 226
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.07 E-value=1.7e-07 Score=111.82 Aligned_cols=318 Identities=12% Similarity=0.030 Sum_probs=169.7
Q ss_pred EEEECCCcEEEEeCCCCeE-EEeceecCcE-EEEEEcCCCCeEEEEeCCccEEEEe-ecCceeeeeeccccCCCceeccC
Q 000731 91 IVGTSSGLLLLHSVDGNAT-EVVGRVEGGV-RFISPSPDGDLLGVTTGFGQILVMT-HDWDLLYENPLEELAEGFDVHEP 167 (1325)
Q Consensus 91 a~as~dG~I~lw~~~~~~~-e~vg~~~~~I-~~~awSPDG~~LA~~s~dgtV~l~s-~~~d~~~e~~l~~~~~~~~Vs~t 167 (1325)
++-..+|.|.+.|..+.++ ..+.. .+.+ ..+.+||||+++.+++.||.|.+++ .....+.++....
T Consensus 10 V~~~~~~~v~viD~~t~~~~~~i~~-~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~---------- 78 (369)
T PF02239_consen 10 VVERGSGSVAVIDGATNKVVARIPT-GGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG---------- 78 (369)
T ss_dssp EEEGGGTEEEEEETTT-SEEEEEE--STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS----------
T ss_pred EEecCCCEEEEEECCCCeEEEEEcC-CCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC----------
Confidence 3445689999999988653 23322 1233 3467999999999999999998876 3445555554432
Q ss_pred ccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeecC-------CCCceeEEEEccCCCeEEEE
Q 000731 168 ELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSEL-------KAFMGAVLEWMPSGANIAAV 240 (1325)
Q Consensus 168 qf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~-------~~~~v~~lawsPdG~~IAs~ 240 (1325)
....+++|+||+|++ ++... .+.+.|+|.++.+...+-.. ....+.+|--+|.+...+..
T Consensus 79 -------~~~~i~~s~DG~~~~-v~n~~-----~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~ 145 (369)
T PF02239_consen 79 -------NPRGIAVSPDGKYVY-VANYE-----PGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVN 145 (369)
T ss_dssp -------EEEEEEE--TTTEEE-EEEEE-----TTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEE
T ss_pred -------CcceEEEcCCCCEEE-EEecC-----CCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEE
Confidence 237899999999999 66443 47999999889888776331 22345678889998865555
Q ss_pred ecCCCCCCCCeEEEEeCCCce-EEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeEEEeEEEEec
Q 000731 241 YDRKSENKCPSIVFYERNGLE-RSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLR 319 (1325)
Q Consensus 241 ~~d~~~~~~~~V~~~e~nGl~-~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~n~~wylkqel~~~~ 319 (1325)
-.+ ...|.+-+-.... ...-.+. .........|+|||+++.++.... +.|-++|..+..- ...+....
T Consensus 146 lkd-----~~~I~vVdy~d~~~~~~~~i~--~g~~~~D~~~dpdgry~~va~~~s--n~i~viD~~~~k~--v~~i~~g~ 214 (369)
T PF02239_consen 146 LKD-----TGEIWVVDYSDPKNLKVTTIK--VGRFPHDGGFDPDGRYFLVAANGS--NKIAVIDTKTGKL--VALIDTGK 214 (369)
T ss_dssp ETT-----TTEEEEEETTTSSCEEEEEEE----TTEEEEEE-TTSSEEEEEEGGG--TEEEEEETTTTEE--EEEEE-SS
T ss_pred Ecc-----CCeEEEEEeccccccceeeec--ccccccccccCcccceeeeccccc--ceeEEEeeccceE--EEEeeccc
Confidence 554 3567665532211 1100111 123467899999999887765433 2688899877531 11222110
Q ss_pred CC---cEEEEEccCCCcEEEEEecCCcEEEEEEEEeeeeCCCeeEEEEeCCEEEEeecCCcCCCCCceeeeecCCCCEEE
Q 000731 320 RD---GIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTE 396 (1325)
Q Consensus 320 ~~---~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDG~~l~lt~l~~~~vPpPm~~~~l~~~~~V~~ 396 (1325)
.. +..-.=||.. ..+|.+.......+..+....+.+++...|-+ .+++...+.-.-
T Consensus 215 ~p~~~~~~~~php~~----------------g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkv-----v~~I~~~G~glF 273 (369)
T PF02239_consen 215 KPHPGPGANFPHPGF----------------GPVWATSGLGYFAIPLIGTDPVSVHDDYAWKV-----VKTIPTQGGGLF 273 (369)
T ss_dssp SBEETTEEEEEETTT----------------EEEEEEEBSSSSEEEEEE--TTT-STTTBTSE-----EEEEE-SSSS--
T ss_pred cccccccccccCCCc----------------ceEEeeccccceecccccCCccccchhhcCeE-----EEEEECCCCcce
Confidence 00 0111122221 23455553333444555555555555544432 234544444466
Q ss_pred EEEecCCCCCEEEEE----ECCCcEEEEeCCCCCccccccCCceeEeeeccccccCcEEEEEEecCCeEEEEEecCCCCc
Q 000731 397 MAFYSKSSKNCLAAI----LSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHS 472 (1325)
Q Consensus 397 VaFSpdg~~~~LAs~----s~Dgti~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~~~~~ 472 (1325)
+.-+|++ ..+.+. ..+++|.++|..+.... .++.......+.|+.|++||+.+-++..+....
T Consensus 274 i~thP~s--~~vwvd~~~~~~~~~v~viD~~tl~~~-----------~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~ 340 (369)
T PF02239_consen 274 IKTHPDS--RYVWVDTFLNPDADTVQVIDKKTLKVV-----------KTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGA 340 (369)
T ss_dssp EE--TT---SEEEEE-TT-SSHT-EEEEECCGTEEE-----------E-HHHHHT--EEEEEE-TTSSEEEEEEE--TTE
T ss_pred eecCCCC--ccEEeeccCCCCCceEEEEECcCccee-----------EEEeccCCCcEeccEECCCCCEEEEEEecCCCE
Confidence 7778998 788877 44589999998753211 111111112489999999999877766554335
Q ss_pred eEEEE
Q 000731 473 NYFRG 477 (1325)
Q Consensus 473 ~~~~~ 477 (1325)
+.+++
T Consensus 341 i~v~D 345 (369)
T PF02239_consen 341 IVVYD 345 (369)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 55554
No 227
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.06 E-value=2.7e-08 Score=108.54 Aligned_cols=287 Identities=14% Similarity=0.163 Sum_probs=181.3
Q ss_pred CEEEEEEcc--C-CCEEEEEEC----CCcEEEEeCC--CCeEEEec--eecCcEEEEEEcCCCC-----eEEEEeCCccE
Q 000731 77 SITAFDYLM--E-KEALIVGTS----SGLLLLHSVD--GNATEVVG--RVEGGVRFISPSPDGD-----LLGVTTGFGQI 140 (1325)
Q Consensus 77 ~V~~v~~sp--d-g~~La~as~----dG~I~lw~~~--~~~~e~vg--~~~~~I~~~awSPDG~-----~LA~~s~dgtV 140 (1325)
.+.++.||. + +..||+||- ...|.|..++ +++..... .|.-.++.+.|.||.+ +||+.+. .+
T Consensus 46 ~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~D--~L 123 (364)
T KOG0290|consen 46 PLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSSD--FL 123 (364)
T ss_pred ceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhcccC--eE
Confidence 466777773 2 357888863 3456665443 33332211 3567899999999984 6665443 69
Q ss_pred EEEeecCce---eeeeeccccCCCceeccCccccCCCCeEEEEEec-CCcEEEEeeccccccCCCCEEEEEECCCCce--
Q 000731 141 LVMTHDWDL---LYENPLEELAEGFDVHEPELSSSFSFKSPISWRG-DGKYFATLSEFCNSSKLHKRLKVWERDSGTL-- 214 (1325)
Q Consensus 141 ~l~s~~~d~---~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWsp-DG~~lAtvss~d~~~~~d~~irVWd~~~G~l-- 214 (1325)
++|....+- .-+..+.... .. .+...+++..|.- |-+++. +||.| .+-.|||.++|..
T Consensus 124 RlWri~~ee~~~~~~~~L~~~k------ns---~~~aPlTSFDWne~dp~~ig-tSSiD------TTCTiWdie~~~~~~ 187 (364)
T KOG0290|consen 124 RLWRIGDEESRVELQSVLNNNK------NS---EFCAPLTSFDWNEVDPNLIG-TSSID------TTCTIWDIETGVSGT 187 (364)
T ss_pred EEEeccCcCCceehhhhhccCc------cc---ccCCcccccccccCCcceeE-eeccc------CeEEEEEEeeccccc
Confidence 998654321 0011111111 11 1224678889985 567777 67664 6888999988733
Q ss_pred -eeeecCCCCceeEEEEccCCC-eEEEEecCCCCCCCCeEEEEeCCCceEEEEEeccCC-CCcEEEEEEccC-CCeeEEE
Q 000731 215 -QASSELKAFMGAVLEWMPSGA-NIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQI-DSTVELLKWNCM-SDLLAAV 290 (1325)
Q Consensus 215 -~~t~e~~~~~v~~lawsPdG~-~IAs~~~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~-~~~V~~laWSpD-g~~LAs~ 290 (1325)
...+-.|+..|..|+|.-.|. .+||++.| +.|++||.-.+.|.......+. ......|+||+. =.++|+-
T Consensus 188 vkTQLIAHDKEV~DIaf~~~s~~~FASvgaD------GSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf 261 (364)
T KOG0290|consen 188 VKTQLIAHDKEVYDIAFLKGSRDVFASVGAD------GSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATF 261 (364)
T ss_pred eeeEEEecCcceeEEEeccCccceEEEecCC------CcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhh
Confidence 333557999999999999775 67999986 5699999877888865544443 456889999974 5678877
Q ss_pred EccCCCCeEEEEEeeCCeeEEEeEEEEecCCcEEEEEccCCCcEEEEEecCCcEEEEEEEEeeeeCCCeeEEEEeCCEEE
Q 000731 291 VRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKIL 370 (1325)
Q Consensus 291 ~~d~~~~~VqLW~~~n~~wylkqel~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDG~~l~ 370 (1325)
..|. ..|+|.|+.... .-..+++.|+.....++|.|.+...|.... |+..++
T Consensus 262 ~~dS--~~V~iLDiR~P~-tpva~L~~H~a~VNgIaWaPhS~~hictaG-------------------------DD~qal 313 (364)
T KOG0290|consen 262 AMDS--NKVVILDIRVPC-TPVARLRNHQASVNGIAWAPHSSSHICTAG-------------------------DDCQAL 313 (364)
T ss_pred hcCC--ceEEEEEecCCC-cceehhhcCcccccceEecCCCCceeeecC-------------------------CcceEE
Confidence 6665 358899987532 112345555555588999998876433322 444555
Q ss_pred EeecCCc---CCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEE
Q 000731 371 VTPLSLS---LMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCV 419 (1325)
Q Consensus 371 lt~l~~~---~vPpPm~~~~l~~~~~V~~VaFSpdg~~~~LAs~s~Dgti~l 419 (1325)
+|++... ++..|+..++ ..+-|+.+.|+|.-. +-+|++..+ ++.+
T Consensus 314 iWDl~q~~~~~~~dPilay~--a~~EVNqi~Ws~~~~-Dwiai~~~k-klei 361 (364)
T KOG0290|consen 314 IWDLQQMPRENGEDPILAYT--AGGEVNQIQWSSSQP-DWIAICFGK-KLEI 361 (364)
T ss_pred EEecccccccCCCCchhhhh--ccceeeeeeecccCC-CEEEEEecC-eeeE
Confidence 5655432 2334665555 466799999997642 678877443 4443
No 228
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.05 E-value=5e-09 Score=116.60 Aligned_cols=288 Identities=12% Similarity=0.035 Sum_probs=167.4
Q ss_pred CEEEEEECCCcEEEEeCCCCe-EEEeceecCcEEEEEEcC--CCCeEEEEeCCccEEEEe-ecCceeeeeeccccCCCce
Q 000731 88 EALIVGTSSGLLLLHSVDGNA-TEVVGRVEGGVRFISPSP--DGDLLGVTTGFGQILVMT-HDWDLLYENPLEELAEGFD 163 (1325)
Q Consensus 88 ~~La~as~dG~I~lw~~~~~~-~e~vg~~~~~I~~~awSP--DG~~LA~~s~dgtV~l~s-~~~d~~~e~~l~~~~~~~~ 163 (1325)
..+|++.++|.|+|||..+++ ++.+..++..++.++|.- .+..+.+++.||+|++|+ |...-...+.....
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~----- 115 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQ----- 115 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCC-----
Confidence 568888999999999998854 454444578888899976 467899999999999986 44333322222211
Q ss_pred eccCccccCCCCeEEEEEec--CCcEEEEeeccccccCCCCEEEEEECCCCce-ee-eecCCCCceeEEEEccCC-CeEE
Q 000731 164 VHEPELSSSFSFKSPISWRG--DGKYFATLSEFCNSSKLHKRLKVWERDSGTL-QA-SSELKAFMGAVLEWMPSG-ANIA 238 (1325)
Q Consensus 164 Vs~tqf~~~~~~i~~isWsp--DG~~lAtvss~d~~~~~d~~irVWd~~~G~l-~~-t~e~~~~~v~~lawsPdG-~~IA 238 (1325)
.+..-+++-. .++.++ +++... ..+-.|.+||.+.-+. +. -.+.|..-|+.|.|.|+- ++|+
T Consensus 116 ----------~~~~f~~ld~nck~~ii~-~GtE~~--~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLl 182 (376)
T KOG1188|consen 116 ----------SGTPFICLDLNCKKNIIA-CGTELT--RSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLL 182 (376)
T ss_pred ----------CCCcceEeeccCcCCeEE-eccccc--cCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEE
Confidence 1123344444 677888 775321 3457899999754433 33 367899999999999964 7899
Q ss_pred EEecCCCCCCCCeEEEEeCCCceEEEEEec-cCCCCcEEEEEEccCC--CeeEEEEccCCCCeEEEEEeeCCeeEEEeEE
Q 000731 239 AVYDRKSENKCPSIVFYERNGLERSSFDIN-EQIDSTVELLKWNCMS--DLLAAVVRFEEYDSVKICFFSNNHWYLKYEI 315 (1325)
Q Consensus 239 s~~~d~~~~~~~~V~~~e~nGl~~~~f~l~-~~~~~~V~~laWSpDg--~~LAs~~~d~~~~~VqLW~~~n~~wylkqel 315 (1325)
||+-| +-|-+||.++....+--+. ......|..+.|..++ + |-+-+... +..+|+++... .+.
T Consensus 183 SGSvD------GLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykr-I~clTH~E---tf~~~ele~~~----~~~ 248 (376)
T KOG1188|consen 183 SGSVD------GLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKR-IMCLTHME---TFAIYELEDGS----EET 248 (376)
T ss_pred eeccc------ceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcce-EEEEEccC---ceeEEEccCCC----hhh
Confidence 99986 5688999765422111011 0123469999999999 5 43444444 68888876532 111
Q ss_pred EEecCCc-EEEEEccCCCcEEEEEecCCcEEEEEEEEeeeeCCCeeEEEEeC--CEEEEeecCC---cCCCCCceeeeec
Q 000731 316 RYLRRDG-IRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDG--SKILVTPLSL---SLMPPPMYLFSLK 389 (1325)
Q Consensus 316 ~~~~~~~-~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDG--~~l~lt~l~~---~~vPpPm~~~~l~ 389 (1325)
.+...+. ....|--+.. -+ ++-...+.+..+.+++.+ ++..+.|+.. ...-.|.....-.
T Consensus 249 ~~~~~~~~~~d~r~~~~~--dY------------~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~ 314 (376)
T KOG1188|consen 249 WLENPDVSADDLRKEDNC--DY------------VINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGG 314 (376)
T ss_pred cccCccchhhhHHhhhhh--hh------------eeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCC
Confidence 1111000 0011110000 00 011111333333333322 2333334331 1111111111112
Q ss_pred CCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCC
Q 000731 390 FPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLP 423 (1325)
Q Consensus 390 ~~~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~~~ 423 (1325)
|..-|.++.|-..+ ..+-+++.||.+.+|..+
T Consensus 315 ~~eiVR~i~~~~~~--~~l~TGGEDG~l~~Wk~~ 346 (376)
T KOG1188|consen 315 HEEIVRDILFDVKN--DVLYTGGEDGLLQAWKVE 346 (376)
T ss_pred cHHHHHHHhhhccc--ceeeccCCCceEEEEecC
Confidence 45567888888777 899999999999999964
No 229
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=98.98 E-value=4.9e-09 Score=122.05 Aligned_cols=122 Identities=16% Similarity=0.171 Sum_probs=88.9
Q ss_pred ceeEEeeecCCCEEEEEeC-CCcEEEEeccccccc---ccceeecccccc--------cc-ccCCC----CCCEEEEEEc
Q 000731 22 ILQFSALDIEQNRLFFASS-ANNIYSAQLSSFQNE---RASIKTAISAEI--------EH-IDLEP----GDSITAFDYL 84 (1325)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~-~~~i~~~~~~~~~~~---~~~~~~~l~~~l--------~~-~~~~~----~~~V~~v~~s 84 (1325)
.+++..|-+..+.+|.++- ++.+|.+|.. .... -.+.....++.+ .. .|..+ .+.|..++||
T Consensus 221 svT~ikWvpg~~~~Fl~a~~sGnlyly~~~-~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS 299 (636)
T KOG2394|consen 221 SVTCIKWVPGSDSLFLVAHASGNLYLYDKE-IVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFS 299 (636)
T ss_pred ceEEEEEEeCCCceEEEEEecCceEEeecc-ccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEc
Confidence 7899999999999998865 6678888663 1111 011111111111 00 11111 3689999999
Q ss_pred cCCCEEEEEECCCcEEEEeCCCCeEE-EeceecCcEEEEEEcCCCCeEEEEeCCccEEEEe
Q 000731 85 MEKEALIVGTSSGLLLLHSVDGNATE-VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMT 144 (1325)
Q Consensus 85 pdg~~La~as~dG~I~lw~~~~~~~e-~vg~~~~~I~~~awSPDG~~LA~~s~dgtV~l~s 144 (1325)
|||+.||++|.||.++|+|-++.++. +..+.=+|..|++|||||++||++++|.-|.||+
T Consensus 300 ~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwS 360 (636)
T KOG2394|consen 300 PDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWS 360 (636)
T ss_pred CCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEE
Confidence 99999999999999999999886554 2223347899999999999999999999999997
No 230
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.98 E-value=9.9e-09 Score=117.37 Aligned_cols=179 Identities=16% Similarity=0.149 Sum_probs=118.6
Q ss_pred EEEEEcCCCCeEEEEeCCccEEEEe-ecCceeeeeeccccCCCceeccCccccCCCCeEEEEEecCCcEEEEeecccccc
Q 000731 120 RFISPSPDGDLLGVTTGFGQILVMT-HDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSS 198 (1325)
Q Consensus 120 ~~~awSPDG~~LA~~s~dgtV~l~s-~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~ 198 (1325)
.+++|++||..||+++.||++++|+ .+-.++.+.. .|...|-.+.|||||++||+++.
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~----------------~~~~eV~DL~FS~dgk~lasig~----- 206 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEI----------------AHHAEVKDLDFSPDGKFLASIGA----- 206 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhH----------------hhcCccccceeCCCCcEEEEecC-----
Confidence 7899999999999999999999986 2222221111 33456789999999999996652
Q ss_pred CCCCEEEEEECCCCceeeeecC--CCCceeEEEEccCC---C-eEEEEecCCCCCCCCeEEEEeCCC-ceEEEEEeccCC
Q 000731 199 KLHKRLKVWERDSGTLQASSEL--KAFMGAVLEWMPSG---A-NIAAVYDRKSENKCPSIVFYERNG-LERSSFDINEQI 271 (1325)
Q Consensus 199 ~~d~~irVWd~~~G~l~~t~e~--~~~~v~~lawsPdG---~-~IAs~~~d~~~~~~~~V~~~e~nG-l~~~~f~l~~~~ 271 (1325)
+ ..+||+.++|..++...+ .+.....+-|+-|+ . +||+.+.+...-...++.+|.++. ++..++ ...
T Consensus 207 --d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~---~~~ 280 (398)
T KOG0771|consen 207 --D-SARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKK---IKR 280 (398)
T ss_pred --C-ceEEEEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhh---hhc
Confidence 3 789999999977776554 34455788898887 3 344443321111112233454431 111111 111
Q ss_pred CCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeEEEeEEEEec----CCcEEEEEccCCCc
Q 000731 272 DSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLR----RDGIRFMWHPTKPL 333 (1325)
Q Consensus 272 ~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~n~~wylkqel~~~~----~~~~~v~Wsp~~~~ 333 (1325)
...|.+++-|+||+++|.++-++ .|-+++...... +.+.+ ...+.+.|+|+...
T Consensus 281 ~~siSsl~VS~dGkf~AlGT~dG---sVai~~~~~lq~-----~~~vk~aH~~~VT~ltF~Pdsr~ 338 (398)
T KOG0771|consen 281 FKSISSLAVSDDGKFLALGTMDG---SVAIYDAKSLQR-----LQYVKEAHLGFVTGLTFSPDSRY 338 (398)
T ss_pred cCcceeEEEcCCCcEEEEeccCC---cEEEEEeceeee-----eEeehhhheeeeeeEEEcCCcCc
Confidence 24699999999999999999998 899999876432 22222 12378999998865
No 231
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.98 E-value=9.5e-09 Score=115.56 Aligned_cols=152 Identities=19% Similarity=0.277 Sum_probs=107.3
Q ss_pred EeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCC-C-CCCEEEEEEccCCCEEEE--EECCCcEEE
Q 000731 26 SALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLE-P-GDSITAFDYLMEKEALIV--GTSSGLLLL 101 (1325)
Q Consensus 26 ~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~-~~~V~~v~~spdg~~La~--as~dG~I~l 101 (1325)
+++.-..++|.++-++. ||.+|++ .++- +++ +... | ...+.++++++++..||- ....|+|.|
T Consensus 91 L~VrmNr~RLvV~Lee~-IyIydI~-~Mkl----LhT-------I~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l 157 (391)
T KOG2110|consen 91 LAVRMNRKRLVVCLEES-IYIYDIK-DMKL----LHT-------IETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVL 157 (391)
T ss_pred EEEEEccceEEEEEccc-EEEEecc-ccee----ehh-------hhccCCCccceEeeccCCCCceEEecCCCCCceEEE
Confidence 34555678899888887 9999994 3332 222 2222 2 345788888888888884 346899999
Q ss_pred EeCCCCe-EEEeceecCcEEEEEEcCCCCeEEEEeCCccEE-EEe-ecCceeeeeeccccCCCceeccCccccCCCCeEE
Q 000731 102 HSVDGNA-TEVVGRVEGGVRFISPSPDGDLLGVTTGFGQIL-VMT-HDWDLLYENPLEELAEGFDVHEPELSSSFSFKSP 178 (1325)
Q Consensus 102 w~~~~~~-~e~vg~~~~~I~~~awSPDG~~LA~~s~dgtV~-l~s-~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~ 178 (1325)
||..+-+ +.....|++.|.|++|||||.+||+||+.|||+ +.+ .+++.++|..-.. .. ..|.+
T Consensus 158 ~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~----~~----------~~IyS 223 (391)
T KOG2110|consen 158 FDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGT----YP----------VSIYS 223 (391)
T ss_pred EEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCc----ee----------eEEEE
Confidence 9998743 345567899999999999999999999999975 322 3344444433221 12 36899
Q ss_pred EEEecCCcEEEEeeccccccCCCCEEEEEECCC
Q 000731 179 ISWRGDGKYFATLSEFCNSSKLHKRLKVWERDS 211 (1325)
Q Consensus 179 isWspDG~~lAtvss~d~~~~~d~~irVWd~~~ 211 (1325)
++|+||++||+ +++ ..++|.||-.++
T Consensus 224 L~Fs~ds~~L~-~sS------~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 224 LSFSPDSQFLA-ASS------NTETVHIFKLEK 249 (391)
T ss_pred EEECCCCCeEE-Eec------CCCeEEEEEecc
Confidence 99999999999 553 247999998733
No 232
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.93 E-value=3.3e-07 Score=108.18 Aligned_cols=246 Identities=13% Similarity=0.122 Sum_probs=154.2
Q ss_pred CEEEEEEccCCCEEEE-----EECCC-----cEEEEeCCCCeE--EEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEe
Q 000731 77 SITAFDYLMEKEALIV-----GTSSG-----LLLLHSVDGNAT--EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMT 144 (1325)
Q Consensus 77 ~V~~v~~spdg~~La~-----as~dG-----~I~lw~~~~~~~--e~vg~~~~~I~~~awSPDG~~LA~~s~dgtV~l~s 144 (1325)
.+.++.|||-|..|++ ...++ .+++|+..++.. .+......+ |+..||+|..+.|-..+ +.|.+++
T Consensus 75 ~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~-W~~qfs~dEsl~arlv~-nev~f~~ 152 (566)
T KOG2315|consen 75 KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQNG-WVPQFSIDESLAARLVS-NEVQFYD 152 (566)
T ss_pred eeeeeeecccccccccccccccccCCCCCCCceeeeeeccceehhheehhhhcC-cccccccchhhhhhhhc-ceEEEEe
Confidence 7899999999988874 23333 466999988432 244444555 89999999766555443 3466654
Q ss_pred e-cCceee---------eeeccccCCCceec--------------------cCcccc------CCCCeEEEEEecCCcEE
Q 000731 145 H-DWDLLY---------ENPLEELAEGFDVH--------------------EPELSS------SFSFKSPISWRGDGKYF 188 (1325)
Q Consensus 145 ~-~~d~~~---------e~~l~~~~~~~~Vs--------------------~tqf~~------~~~~i~~isWspDG~~l 188 (1325)
. +++.+. ...+.+....-+|. +.+.+. .....+.+.|.+-|.-|
T Consensus 153 ~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~L 232 (566)
T KOG2315|consen 153 LGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTAL 232 (566)
T ss_pred cCCccceeeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceE
Confidence 2 222211 11122111001110 111110 11234789999888733
Q ss_pred E--Eeecccccc---CCCCEEEEEECCCCceeeeecCCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeCCCceEE
Q 000731 189 A--TLSEFCNSS---KLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERS 263 (1325)
Q Consensus 189 A--tvss~d~~~---~~d~~irVWd~~~G~l~~t~e~~~~~v~~lawsPdG~~IAs~~~d~~~~~~~~V~~~e~nGl~~~ 263 (1325)
. +++.+|..+ -+..++.+.+. +|.-....-...|+|+++.|+|+|+-.|++-... --.|.||+.+|....
T Consensus 233 LvLastdVDktn~SYYGEq~Lyll~t-~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfM----PAkvtifnlr~~~v~ 307 (566)
T KOG2315|consen 233 LVLASTDVDKTNASYYGEQTLYLLAT-QGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFM----PAKVTIFNLRGKPVF 307 (566)
T ss_pred EEEEEEeecCCCccccccceEEEEEe-cCceEEEecCCCCCceEEEECCCCCEEEEEEecc----cceEEEEcCCCCEeE
Confidence 2 133344320 14468899998 6877777666789999999999999887664332 257999999887654
Q ss_pred EEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeEEEeEEEEecCCcEEEEEccCCCcEEEEEe
Q 000731 264 SFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWT 339 (1325)
Q Consensus 264 ~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~n~~wylkqel~~~~~~~~~v~Wsp~~~~~L~~~~ 339 (1325)
+ ++ ++.=+.+-|||-|.+|+.++-+.-.+.|-+||+.|++ +...+...+.+.+.|+|+|.. +.+.+
T Consensus 308 d--f~---egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K----~i~~~~a~~tt~~eW~PdGe~-flTAT 373 (566)
T KOG2315|consen 308 D--FP---EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRK----LIAKFKAANTTVFEWSPDGEY-FLTAT 373 (566)
T ss_pred e--CC---CCCccceEECCCCCEEEEeecCCCCCceEEEeccchh----hccccccCCceEEEEcCCCcE-EEEEe
Confidence 3 33 3455689999999999999876534469999999964 233333334478999999876 44443
No 233
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=98.93 E-value=1.7e-08 Score=108.85 Aligned_cols=253 Identities=13% Similarity=0.159 Sum_probs=162.1
Q ss_pred CCCEEEEEEccCCCEEEEEECCCcEEEEeCCCCeE--EEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCce---
Q 000731 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNAT--EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDL--- 149 (1325)
Q Consensus 75 ~~~V~~v~~spdg~~La~as~dG~I~lw~~~~~~~--e~vg~~~~~I~~~awSPDG~~LA~~s~dgtV~l~s~~~d~--- 149 (1325)
.+.|+++-|-.+++ |.+|+..|-|++|.+++.+- -+-+.+...|+.+.--|+ ..|.+-+.|.++.+|+..+..
T Consensus 14 ~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~~i~ 91 (323)
T KOG0322|consen 14 SSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSAFIS 91 (323)
T ss_pred cchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccCcceEE
Confidence 45788888877766 78899999999999998542 233445678999999998 567788899999999866521
Q ss_pred eeeeeccccC--------CCcee----------------c----cCccc-------cCCCCeEEEEEecC-CcEEEEeec
Q 000731 150 LYENPLEELA--------EGFDV----------------H----EPELS-------SSFSFKSPISWRGD-GKYFATLSE 193 (1325)
Q Consensus 150 ~~e~~l~~~~--------~~~~V----------------s----~tqf~-------~~~~~i~~isWspD-G~~lAtvss 193 (1325)
+..+.+.... .++.. . .+|.+ +..+.+.+..|--+ |.+|.-.++
T Consensus 92 i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaG 171 (323)
T KOG0322|consen 92 IHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAG 171 (323)
T ss_pred EeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEe
Confidence 1111111111 01111 0 11111 23356677777543 444332554
Q ss_pred cccccCCCCEEEEEECCCCc----------eeeeecCCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeCCCc---
Q 000731 194 FCNSSKLHKRLKVWERDSGT----------LQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGL--- 260 (1325)
Q Consensus 194 ~d~~~~~d~~irVWd~~~G~----------l~~t~e~~~~~v~~lawsPdG~~IAs~~~d~~~~~~~~V~~~e~nGl--- 260 (1325)
. +.+.|-+||..+|. ..+.-..|.+.+.++.+-|.-+.=++++.+ ..++.|..|-.
T Consensus 172 y-----Esghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~------dkl~~~Sl~~s~gs 240 (323)
T KOG0322|consen 172 Y-----ESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGAD------DKLVMYSLNHSTGS 240 (323)
T ss_pred c-----cCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCcc------ccceeeeeccccCc
Confidence 4 35899999997772 222223467778889888765554455442 34666765421
Q ss_pred -eEE-EEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeEEEeEEEEecCCcEEEEEccCCCcEEEEE
Q 000731 261 -ERS-SFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICW 338 (1325)
Q Consensus 261 -~~~-~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~n~~wylkqel~~~~~~~~~v~Wsp~~~~~L~~~ 338 (1325)
.++ +.++..+ .|..+..-||+++||+++.|+ .|+++++.+. .| |++.
T Consensus 241 lq~~~e~~lknp---Gv~gvrIRpD~KIlATAGWD~---RiRVyswrtl-----------------------~p--LAVL 289 (323)
T KOG0322|consen 241 LQIRKEITLKNP---GVSGVRIRPDGKILATAGWDH---RIRVYSWRTL-----------------------NP--LAVL 289 (323)
T ss_pred ccccceEEecCC---CccceEEccCCcEEeecccCC---cEEEEEeccC-----------------------Cc--hhhh
Confidence 222 2233323 478889999999999999988 6777554321 11 1111
Q ss_pred ecCCcEEEEEEEEeeeeCCCeeEEEEeCCEEEEeecCCcCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEE
Q 000731 339 TLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLC 418 (1325)
Q Consensus 339 ~~~g~~~~~~~~~~~~~~d~~~v~viDG~~l~lt~l~~~~vPpPm~~~~l~~~~~V~~VaFSpdg~~~~LAs~s~Dgti~ 418 (1325)
. .|.+.|++|||||+. +.+|+++.|++|.
T Consensus 290 k-------------------------------------------------yHsagvn~vAfspd~--~lmAaaskD~rIS 318 (323)
T KOG0322|consen 290 K-------------------------------------------------YHSAGVNAVAFSPDC--ELMAAASKDARIS 318 (323)
T ss_pred h-------------------------------------------------hhhcceeEEEeCCCC--chhhhccCCceEE
Confidence 1 256779999999997 7999999999999
Q ss_pred EEeC
Q 000731 419 VVDL 422 (1325)
Q Consensus 419 lw~~ 422 (1325)
||++
T Consensus 319 LWkL 322 (323)
T KOG0322|consen 319 LWKL 322 (323)
T ss_pred eeec
Confidence 9985
No 234
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=98.93 E-value=1e-08 Score=120.39 Aligned_cols=209 Identities=12% Similarity=0.117 Sum_probs=148.6
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEec---cc-ccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCC
Q 000731 22 ILQFSALDIEQNRLFFASSANNIYSAQL---SS-FQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSG 97 (1325)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~---~~-~~~~~~~~~~~l~~~l~~~~~~~~~~V~~v~~spdg~~La~as~dG 97 (1325)
-+.++++-+-.-.|+.|++++.|..|++ .. ..+.. -.+-+ +++| .+.|.++.+++.++.+.+|+.||
T Consensus 296 ~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~-epi~t----fraH----~gPVl~v~v~~n~~~~ysgg~Dg 366 (577)
T KOG0642|consen 296 CIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDV-EPILT----FRAH----EGPVLCVVVPSNGEHCYSGGIDG 366 (577)
T ss_pred hhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccce-eeeEE----Eecc----cCceEEEEecCCceEEEeeccCc
Confidence 4555667677888999999999999998 21 11111 11211 3444 47899999999999999999999
Q ss_pred cEEEEeCC------C-C---eE-E-EeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeee--ccccC-CCc
Q 000731 98 LLLLHSVD------G-N---AT-E-VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENP--LEELA-EGF 162 (1325)
Q Consensus 98 ~I~lw~~~------~-~---~~-e-~vg~~~~~I~~~awSPDG~~LA~~s~dgtV~l~s~~~d~~~e~~--l~~~~-~~~ 162 (1325)
+|+.|++. . . .+ . +.| |.+.||.+++|+--..|++++.||||++|.. ..+.+ +.... ++.
T Consensus 367 ~I~~w~~p~n~dp~ds~dp~vl~~~l~G-htdavw~l~~s~~~~~Llscs~DgTvr~w~~----~~~~~~~f~~~~e~g~ 441 (577)
T KOG0642|consen 367 TIRCWNLPPNQDPDDSYDPSVLSGTLLG-HTDAVWLLALSSTKDRLLSCSSDGTVRLWEP----TEESPCTFGEPKEHGY 441 (577)
T ss_pred eeeeeccCCCCCcccccCcchhccceec-cccceeeeeecccccceeeecCCceEEeecc----CCcCccccCCccccCC
Confidence 99999652 1 1 11 2 445 5899999999999999999999999988742 22211 10000 111
Q ss_pred eec---------------------------cCccc----------cCCCCeEEEEEecCCcEEEEeeccccccCCCCEEE
Q 000731 163 DVH---------------------------EPELS----------SSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLK 205 (1325)
Q Consensus 163 ~Vs---------------------------~tqf~----------~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~ir 205 (1325)
+.+ ..+++ ...+.+..|.|.|.+-+.. .+ ..++.||
T Consensus 442 Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~-~~------hed~~Ir 514 (577)
T KOG0642|consen 442 PLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITF-TA------HEDRSIR 514 (577)
T ss_pred cceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeE-ec------ccCCcee
Confidence 111 01111 1235678899999987655 33 3579999
Q ss_pred EEECCCCceeeeecCCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeC
Q 000731 206 VWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYER 257 (1325)
Q Consensus 206 VWd~~~G~l~~t~e~~~~~v~~lawsPdG~~IAs~~~d~~~~~~~~V~~~e~ 257 (1325)
++|-.+|.++.....|...+.++++-|+|-++++++.| ..|.||..
T Consensus 515 ~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d------~sv~l~kl 560 (577)
T KOG0642|consen 515 FFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHD------GSVRLWKL 560 (577)
T ss_pred cccccccccchheeeccceecceeecCCCceEEeecCC------ceeehhhc
Confidence 99988999988877787888999999999999999986 56888864
No 235
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=98.92 E-value=7.7e-08 Score=107.95 Aligned_cols=284 Identities=10% Similarity=0.050 Sum_probs=172.0
Q ss_pred EeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeeeccccCCCceeccCccccCCCCeEEEEEecCCcEEEE
Q 000731 111 VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFAT 190 (1325)
Q Consensus 111 ~vg~~~~~I~~~awSPDG~~LA~~s~dgtV~l~s~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAt 190 (1325)
+.| |.+.|+++.||.+|++||+|+.|..+.+|.-+ +.+.... .++|. ..-+.|...|.+++|.-...++-
T Consensus 52 ~~~-H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~d-e~~~~k~------~KPI~-~~~~~H~SNIF~L~F~~~N~~~~- 121 (609)
T KOG4227|consen 52 VRE-HTGCINALQFSHNDRFLASGGDDMHGRVWNVD-ELMVRKT------PKPIG-VMEHPHRSNIFSLEFDLENRFLY- 121 (609)
T ss_pred hhh-hccccceeeeccCCeEEeecCCcceeeeechH-HHHhhcC------CCCce-eccCccccceEEEEEccCCeeEe-
Confidence 345 58899999999999999999999999998643 1111110 11110 00114557789999998776655
Q ss_pred eeccccccCCCCEEEEEECCCCceeeeecC--CCCceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeC-CCceEEEEEe
Q 000731 191 LSEFCNSSKLHKRLKVWERDSGTLQASSEL--KAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYER-NGLERSSFDI 267 (1325)
Q Consensus 191 vss~d~~~~~d~~irVWd~~~G~l~~t~e~--~~~~v~~lawsPdG~~IAs~~~d~~~~~~~~V~~~e~-nGl~~~~f~l 267 (1325)
++ +.+++|-.-|.++.+.+..... ..|.|..++-+|--+.+|+.+++ ..|.||+. ....|++..+
T Consensus 122 SG------~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~------~~V~~~D~Rd~~~~~~~~~ 189 (609)
T KOG4227|consen 122 SG------ERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRA------KLVSFIDNRDRQNPISLVL 189 (609)
T ss_pred cC------CCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecC------ceEEEEeccCCCCCCceee
Confidence 54 3467888889988887777643 34678999999999999999985 56889983 3333555444
Q ss_pred ccCCCCcEEEEEEccCCC-eeEEEEccCCCCeEEEEEeeCCeeEEEe--EEEEecC-C--cEEEEEccCCCcEEEEEecC
Q 000731 268 NEQIDSTVELLKWNCMSD-LLAAVVRFEEYDSVKICFFSNNHWYLKY--EIRYLRR-D--GIRFMWHPTKPLQLICWTLD 341 (1325)
Q Consensus 268 ~~~~~~~V~~laWSpDg~-~LAs~~~d~~~~~VqLW~~~n~~wylkq--el~~~~~-~--~~~v~Wsp~~~~~L~~~~~~ 341 (1325)
+......-.++-|+|--- +||+.+..+ -+-+||..-..--+-+ -...-+. . -..+.|+|.+.+.+.+ -.
T Consensus 190 ~AN~~~~F~t~~F~P~~P~Li~~~~~~~---G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msi-RR- 264 (609)
T KOG4227|consen 190 PANSGKNFYTAEFHPETPALILVNSETG---GPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSI-RR- 264 (609)
T ss_pred ecCCCccceeeeecCCCceeEEeccccC---CCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhh-hc-
Confidence 422223467889999764 567777665 5889997532110000 0000111 1 1568899988642221 11
Q ss_pred CcE-EEEEE------EEeee-----------------eCCCeeEEEEeCCEEEEeecCCcC--------------CCCCc
Q 000731 342 GQI-TTYNF------IWTTA-----------------VMENSTALVIDGSKILVTPLSLSL--------------MPPPM 383 (1325)
Q Consensus 342 g~~-~~~~~------~~~~~-----------------~~d~~~v~viDG~~l~lt~l~~~~--------------vPpPm 383 (1325)
|.. ..+++ ++..+ .+|..++...|.-.|.+|-+..++ +|...
T Consensus 265 ~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~ 344 (609)
T KOG4227|consen 265 GKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDYTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEI 344 (609)
T ss_pred cCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeecceeeeccCcccceEEEecCCCccccCccccCcchhhCchhh
Confidence 110 00111 11111 112222233444457777553221 11111
Q ss_pred ----eeeee-cCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCC
Q 000731 384 ----YLFSL-KFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLP 423 (1325)
Q Consensus 384 ----~~~~l-~~~~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~~~ 423 (1325)
.+-.| .|.+-++.|.|+|.. ++|++.+..+.++||..-
T Consensus 345 ~i~~~~~VLrGHRSv~NQVRF~~H~--~~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 345 FIEKELTVLRGHRSVPNQVRFSQHN--NLLVSSGVENSFKLWSDH 387 (609)
T ss_pred eecceeEEEecccccccceeecCCc--ceEeccchhhheeccccc
Confidence 01112 367778999999998 899999999999999754
No 236
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=98.86 E-value=8.1e-09 Score=111.38 Aligned_cols=157 Identities=14% Similarity=0.095 Sum_probs=118.3
Q ss_pred CCEEEEEEcc-CCC--EEEEEECCCcEEEEeCCCC----------eEE-EeceecCcEEEEEEcCCCCeEEEEeCCccEE
Q 000731 76 DSITAFDYLM-EKE--ALIVGTSSGLLLLHSVDGN----------ATE-VVGRVEGGVRFISPSPDGDLLGVTTGFGQIL 141 (1325)
Q Consensus 76 ~~V~~v~~sp-dg~--~La~as~dG~I~lw~~~~~----------~~e-~vg~~~~~I~~~awSPDG~~LA~~s~dgtV~ 141 (1325)
+.|.+..|-. ++. .|+.|.++|.|.+||..++ +++ -...|...|.++.+.|.-..=++++.+..+.
T Consensus 151 gsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~ 230 (323)
T KOG0322|consen 151 GSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLV 230 (323)
T ss_pred CceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccce
Confidence 5566666433 232 5668899999999999875 222 2345788999999988777777888888899
Q ss_pred EEeecCceeeeeeccccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeecCC
Q 000731 142 VMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELK 221 (1325)
Q Consensus 142 l~s~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~ 221 (1325)
+|+-+|+...-. +. +.+. -...++..+..||||+.|| +++ .|+.||||+-.+++.+..+.-|
T Consensus 231 ~~Sl~~s~gslq-~~-----~e~~-----lknpGv~gvrIRpD~KIlA-TAG------WD~RiRVyswrtl~pLAVLkyH 292 (323)
T KOG0322|consen 231 MYSLNHSTGSLQ-IR-----KEIT-----LKNPGVSGVRIRPDGKILA-TAG------WDHRIRVYSWRTLNPLAVLKYH 292 (323)
T ss_pred eeeeccccCccc-cc-----ceEE-----ecCCCccceEEccCCcEEe-ecc------cCCcEEEEEeccCCchhhhhhh
Confidence 998877643211 10 0000 0124678899999999999 554 4689999998899999999999
Q ss_pred CCceeEEEEccCCCeEEEEecCCCCCCCCeEEEEe
Q 000731 222 AFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYE 256 (1325)
Q Consensus 222 ~~~v~~lawsPdG~~IAs~~~d~~~~~~~~V~~~e 256 (1325)
.+.++++||+|+-+++|+++.| ..|.+|.
T Consensus 293 sagvn~vAfspd~~lmAaaskD------~rISLWk 321 (323)
T KOG0322|consen 293 SAGVNAVAFSPDCELMAAASKD------ARISLWK 321 (323)
T ss_pred hcceeEEEeCCCCchhhhccCC------ceEEeee
Confidence 9999999999999999999986 5699996
No 237
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=98.85 E-value=2.1e-08 Score=117.86 Aligned_cols=240 Identities=12% Similarity=0.079 Sum_probs=156.5
Q ss_pred CCCEEEEEEccCCCEEEEEECCCcEEEEeCCC------CeE---EEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEee
Q 000731 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDG------NAT---EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTH 145 (1325)
Q Consensus 75 ~~~V~~v~~spdg~~La~as~dG~I~lw~~~~------~~~---e~vg~~~~~I~~~awSPDG~~LA~~s~dgtV~l~s~ 145 (1325)
.+.|.+++|.|-...|++|+.||+|++|+++. +.+ -.+-.|.+.|.|++.++.|+.+-+||.||+|..|+-
T Consensus 294 ~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~ 373 (577)
T KOG0642|consen 294 DDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNL 373 (577)
T ss_pred hhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeecc
Confidence 36899999999999999999999999999931 222 245567999999999999999999999999988742
Q ss_pred cCceeeeeeccccC-CCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeecCC-C-
Q 000731 146 DWDLLYENPLEELA-EGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELK-A- 222 (1325)
Q Consensus 146 ~~d~~~e~~l~~~~-~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~-~- 222 (1325)
- -...+++ ..-.+-.+.+.||.+.++.+++|+--..|++++ .|+++|.|+. ++....++... .
T Consensus 374 p------~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs-------~DgTvr~w~~-~~~~~~~f~~~~e~ 439 (577)
T KOG0642|consen 374 P------PNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCS-------SDGTVRLWEP-TEESPCTFGEPKEH 439 (577)
T ss_pred C------CCCCcccccCcchhccceeccccceeeeeecccccceeeec-------CCceEEeecc-CCcCccccCCcccc
Confidence 1 1111111 111122455679999999999999998888443 2689999999 44433333221 1
Q ss_pred CceeEE---EEccCCCeEEEEecCCC------CCCCCeEEEEeCCCceEEEEEeccCC-CCcEEEEEEccCCCeeEEEEc
Q 000731 223 FMGAVL---EWMPSGANIAAVYDRKS------ENKCPSIVFYERNGLERSSFDINEQI-DSTVELLKWNCMSDLLAAVVR 292 (1325)
Q Consensus 223 ~~v~~l---awsPdG~~IAs~~~d~~------~~~~~~V~~~e~nGl~~~~f~l~~~~-~~~V~~laWSpDg~~LAs~~~ 292 (1325)
+.-.++ +|.|. ++.++.... ..-..++++++-.. .+++. -..++-+.|.|.+.+..++..
T Consensus 440 g~Plsvd~~ss~~a---~~~~s~~~~~~~~~~~ev~s~~~~~~s~~-------~~~~~~~~~in~vVs~~~~~~~~~~he 509 (577)
T KOG0642|consen 440 GYPLSVDRTSSRPA---HSLASFRFGYTSIDDMEVVSDLLIFESSA-------SPGPRRYPQINKVVSHPTADITFTAHE 509 (577)
T ss_pred CCcceEeeccchhH---hhhhhcccccccchhhhhhhheeeccccC-------CCcccccCccceEEecCCCCeeEeccc
Confidence 111233 33332 222221100 00012344443221 11111 135788999999999999999
Q ss_pred cCCCCeEEEEEeeCCeeEEEeEEEEecCCcEEEEEccCCCcEEEEEecCCcE
Q 000731 293 FEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQI 344 (1325)
Q Consensus 293 d~~~~~VqLW~~~n~~wylkqel~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~ 344 (1325)
|+ .|++.|..+.. +.++...+.....+++.+|.++. |+.+..+|.+
T Consensus 510 d~---~Ir~~dn~~~~--~l~s~~a~~~svtslai~~ng~~-l~s~s~d~sv 555 (577)
T KOG0642|consen 510 DR---SIRFFDNKTGK--ILHSMVAHKDSVTSLAIDPNGPY-LMSGSHDGSV 555 (577)
T ss_pred CC---ceecccccccc--cchheeeccceecceeecCCCce-EEeecCCcee
Confidence 99 89999987754 22344443334478899999886 6777666655
No 238
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=98.85 E-value=1.9e-07 Score=104.38 Aligned_cols=193 Identities=13% Similarity=0.230 Sum_probs=134.2
Q ss_pred CCEEEEEECCCCceeeeecCCCCceeEEEEcc--CCCeEEEEecCCCCCCCCeEEEEeCCCc-eEEEEEeccCCCCcEEE
Q 000731 201 HKRLKVWERDSGTLQASSELKAFMGAVLEWMP--SGANIAAVYDRKSENKCPSIVFYERNGL-ERSSFDINEQIDSTVEL 277 (1325)
Q Consensus 201 d~~irVWd~~~G~l~~t~e~~~~~v~~lawsP--dG~~IAs~~~d~~~~~~~~V~~~e~nGl-~~~~f~l~~~~~~~V~~ 277 (1325)
.+.||+||..+|+.+..+.++++.++.+.|.- ++..+-|++.| ++|++||.--. +...+....+....-.+
T Consensus 49 ngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssD------G~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ 122 (376)
T KOG1188|consen 49 NGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSD------GTVRLWDIRSQAESARISWTQQSGTPFIC 122 (376)
T ss_pred CCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccC------CeEEEEEeecchhhhheeccCCCCCcceE
Confidence 48999999999999999999999889999977 56778888875 57999994211 11111111121235678
Q ss_pred EEEccCCCeeEEEEccCCCC-eEEEEEeeCCeeEEEeEEEEecCCcEEEEEccCCCcEEEEEecCCcEEEEEEEEeeeeC
Q 000731 278 LKWNCMSDLLAAVVRFEEYD-SVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVM 356 (1325)
Q Consensus 278 laWSpDg~~LAs~~~d~~~~-~VqLW~~~n~~wylkqel~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~ 356 (1325)
++-++.+.++|.++.-.... .|.|||+.+..-.+.+-...|.++.+.+.|||.+|..|..++-||-+. +|++.-+
T Consensus 123 ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvn----lfD~~~d 198 (376)
T KOG1188|consen 123 LDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVN----LFDTKKD 198 (376)
T ss_pred eeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEE----eeecCCC
Confidence 88899999999997643222 799999987532222233345567799999999999887777777543 2333211
Q ss_pred CCeeEEEEeCCEEEEeecCCcCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCCC
Q 000731 357 ENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPD 426 (1325)
Q Consensus 357 d~~~v~viDG~~l~lt~l~~~~vPpPm~~~~l~~~~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~~~~~~ 426 (1325)
+-..++ ..++.+.+.|..+.|..++ -+.|-+.++.+++.+|++....
T Consensus 199 ---------------------~EeDaL-~~viN~~sSI~~igw~~~~-ykrI~clTH~Etf~~~ele~~~ 245 (376)
T KOG1188|consen 199 ---------------------NEEDAL-LHVINHGSSIHLIGWLSKK-YKRIMCLTHMETFAIYELEDGS 245 (376)
T ss_pred ---------------------cchhhH-HHhhcccceeeeeeeecCC-cceEEEEEccCceeEEEccCCC
Confidence 111111 1245567789999999887 2579999999999999997654
No 239
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.84 E-value=4.8e-07 Score=112.45 Aligned_cols=295 Identities=13% Similarity=0.098 Sum_probs=168.8
Q ss_pred CEEEEEEccCCCEEEEEECCCcEEEEeCCCCeE-EE--ec-eecCcEEEEEEc--CCCCeEEEEeCCccEEEEeecCcee
Q 000731 77 SITAFDYLMEKEALIVGTSSGLLLLHSVDGNAT-EV--VG-RVEGGVRFISPS--PDGDLLGVTTGFGQILVMTHDWDLL 150 (1325)
Q Consensus 77 ~V~~v~~spdg~~La~as~dG~I~lw~~~~~~~-e~--vg-~~~~~I~~~awS--PDG~~LA~~s~dgtV~l~s~~~d~~ 150 (1325)
....+.|+|=...++++...-.|.+||-+.+++ .- .| ....+|..+.+= -|-.+|.+++.||.|++|.. +...
T Consensus 1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~-y~~~ 1144 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKD-YADK 1144 (1387)
T ss_pred CCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecc-cccc
Confidence 356788899888999888788899999875443 21 11 224568888773 35678999999999999942 2211
Q ss_pred -eeeeccccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeee-ecCCCCceeEE
Q 000731 151 -YENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQAS-SELKAFMGAVL 228 (1325)
Q Consensus 151 -~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t-~e~~~~~v~~l 228 (1325)
....+.+.. ..+ +.+..+..+.-.-+.|--...+|. +++ +-+.|||||...-.+... --+.+..++++
T Consensus 1145 ~~~~eLVTaw--~~L-s~~~~~~r~~~~v~dWqQ~~G~Ll-~tG------d~r~IRIWDa~~E~~~~diP~~s~t~vTaL 1214 (1387)
T KOG1517|consen 1145 WKKPELVTAW--SSL-SDQLPGARGTGLVVDWQQQSGHLL-VTG------DVRSIRIWDAHKEQVVADIPYGSSTLVTAL 1214 (1387)
T ss_pred cCCceeEEee--ccc-cccCccCCCCCeeeehhhhCCeEE-ecC------CeeEEEEEecccceeEeecccCCCccceee
Confidence 111111100 000 111111112225678988777777 442 348999999943333332 12234455665
Q ss_pred EE-ccCCCeEEEEecCCCCCCCCeEEEEeCCCc-eEEEEEeccCCCCc--EEEEEEccCCCe-eEEEEccCCCCeEEEEE
Q 000731 229 EW-MPSGANIAAVYDRKSENKCPSIVFYERNGL-ERSSFDINEQIDST--VELLKWNCMSDL-LAAVVRFEEYDSVKICF 303 (1325)
Q Consensus 229 aw-sPdG~~IAs~~~d~~~~~~~~V~~~e~nGl-~~~~f~l~~~~~~~--V~~laWSpDg~~-LAs~~~d~~~~~VqLW~ 303 (1325)
+= .+.|++||+|-.| +.|++||+--- +..-.....++... |..+.+.+.|-- |++++.+| .|++||
T Consensus 1215 S~~~~~gn~i~AGfaD------GsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G---~I~~~D 1285 (1387)
T KOG1517|consen 1215 SADLVHGNIIAAGFAD------GSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDG---DIQLLD 1285 (1387)
T ss_pred cccccCCceEEEeecC------CceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCC---eEEEEe
Confidence 43 3457999999886 57999995311 11101111223333 999999998876 99999999 899999
Q ss_pred eeCCe--eEEEeEEEEec--CC-cEEEEEccCCCcEEEEEecCCcEEEEEEEEeeeeCCCeeEEEEeCCEEEEeecCCcC
Q 000731 304 FSNNH--WYLKYEIRYLR--RD-GIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSL 378 (1325)
Q Consensus 304 ~~n~~--wylkqel~~~~--~~-~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDG~~l~lt~l~~~~ 378 (1325)
..... -|+ .+..+- ++ .+.+.=|+..+. ++.+ .++.+++|++.+..
T Consensus 1286 lR~~~~e~~~--~iv~~~~yGs~lTal~VH~hapi-iAsG--------------------------s~q~ikIy~~~G~~ 1336 (1387)
T KOG1517|consen 1286 LRMSSKETFL--TIVAHWEYGSALTALTVHEHAPI-IASG--------------------------SAQLIKIYSLSGEQ 1336 (1387)
T ss_pred cccCcccccc--eeeeccccCccceeeeeccCCCe-eeec--------------------------CcceEEEEecChhh
Confidence 86410 011 111110 11 133333444332 2222 22334444433221
Q ss_pred C----CCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCC
Q 000731 379 M----PPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPA 424 (1325)
Q Consensus 379 v----PpPm~~~~l~~~~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~~~~ 424 (1325)
+ +.|... -+-.+.+.+++|+|.- -+||++..|.+|.||..+.
T Consensus 1337 l~~~k~n~~F~--~q~~gs~scL~FHP~~--~llAaG~~Ds~V~iYs~~k 1382 (1387)
T KOG1517|consen 1337 LNIIKYNPGFM--GQRIGSVSCLAFHPHR--LLLAAGSADSTVSIYSCEK 1382 (1387)
T ss_pred hcccccCcccc--cCcCCCcceeeecchh--HhhhhccCCceEEEeecCC
Confidence 1 112110 0123456899999997 7899999999999998864
No 240
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=98.84 E-value=2.4e-07 Score=114.09 Aligned_cols=252 Identities=12% Similarity=0.053 Sum_probs=158.6
Q ss_pred ceeEEeeecC-CCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCE--EEEEECCCc
Q 000731 22 ILQFSALDIE-QNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEA--LIVGTSSGL 98 (1325)
Q Consensus 22 ~~~~~~~d~~-~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~V~~v~~spdg~~--La~as~dG~ 98 (1325)
.+.++.|-+. .+.|..++.+++|..||+ ..+.. ++++.+..+.-...+.++.+.|..+-.- +++++.||.
T Consensus 244 ~v~~~~f~p~~p~ll~gG~y~GqV~lWD~--~~~~~-----~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~ 316 (555)
T KOG1587|consen 244 EVTCLKFCPFDPNLLAGGCYNGQVVLWDL--RKGSD-----TPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGS 316 (555)
T ss_pred ceeEEEeccCCcceEEeeccCceEEEEEc--cCCCC-----CCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCc
Confidence 5667777655 466666688999999999 33332 1112222111112468999999776555 889999999
Q ss_pred EEEEeCCCCe-------EEEec------eecCcEEEEEEcCC-CCeEEEEeCCccEEEEeecCc-eeeeeeccccCCCce
Q 000731 99 LLLHSVDGNA-------TEVVG------RVEGGVRFISPSPD-GDLLGVTTGFGQILVMTHDWD-LLYENPLEELAEGFD 163 (1325)
Q Consensus 99 I~lw~~~~~~-------~e~vg------~~~~~I~~~awSPD-G~~LA~~s~dgtV~l~s~~~d-~~~e~~l~~~~~~~~ 163 (1325)
|..|+.+.-. .+..- .-..++++++|.|- =..+.+||.+|.|.-=++..- +.-+.....
T Consensus 317 i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~------ 390 (555)
T KOG1587|consen 317 ICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKG------ 390 (555)
T ss_pred EeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccc------
Confidence 9999876411 11111 11357899999774 356788889998865333211 111010010
Q ss_pred eccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECC-CCceeeeecCCCCceeEEEEccCCC-eEEEEe
Q 000731 164 VHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERD-SGTLQASSELKAFMGAVLEWMPSGA-NIAAVY 241 (1325)
Q Consensus 164 Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~-~G~l~~t~e~~~~~v~~lawsPdG~-~IAs~~ 241 (1325)
..++..|.+.+..|.|+|=+.-+..++ +|-++|||.-. .-..+..++.....+.+++|||--- .+|++.
T Consensus 391 --~~~~~~h~g~v~~v~~nPF~~k~fls~-------gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d 461 (555)
T KOG1587|consen 391 --HSTFITHIGPVYAVSRNPFYPKNFLSV-------GDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVD 461 (555)
T ss_pred --cccccccCcceEeeecCCCccceeeee-------ccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEc
Confidence 012336788999999999886444132 35799999874 3334444455556689999999875 455555
Q ss_pred cCCCCCCCCeEEEEeCCCceEEEEEecc-CCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEee
Q 000731 242 DRKSENKCPSIVFYERNGLERSSFDINE-QIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFS 305 (1325)
Q Consensus 242 ~d~~~~~~~~V~~~e~nGl~~~~f~l~~-~~~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~ 305 (1325)
. ++.|-+||.+-...+- .+.. ........+.|+++|++||+|...| ++.+|++.
T Consensus 462 ~------~G~l~iWDLl~~~~~P-v~s~~~~~~~l~~~~~s~~g~~lavGd~~G---~~~~~~l~ 516 (555)
T KOG1587|consen 462 G------DGNLDIWDLLQDDEEP-VLSQKVCSPALTRVRWSPNGKLLAVGDANG---TTHILKLS 516 (555)
T ss_pred C------CCceehhhhhccccCC-cccccccccccceeecCCCCcEEEEecCCC---cEEEEEcC
Confidence 4 3679999964222111 1110 1123456889999999999999988 89999985
No 241
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.83 E-value=3.4e-06 Score=99.16 Aligned_cols=322 Identities=16% Similarity=0.175 Sum_probs=187.3
Q ss_pred CEEEEEECCCc--EEEEeCCCCeE-EEeceecC-cEEEEEEcCCCCeEEEEeCCccEEEEe-ecCceeeeeeccccCCCc
Q 000731 88 EALIVGTSSGL--LLLHSVDGNAT-EVVGRVEG-GVRFISPSPDGDLLGVTTGFGQILVMT-HDWDLLYENPLEELAEGF 162 (1325)
Q Consensus 88 ~~La~as~dG~--I~lw~~~~~~~-e~vg~~~~-~I~~~awSPDG~~LA~~s~dgtV~l~s-~~~d~~~e~~l~~~~~~~ 162 (1325)
.+.|+....++ ...||...... .+... .. .=+-+.|||-|.+|++--.-| |.+|. .+|+.+.... |
T Consensus 179 DQf~v~~d~~~~~svfwN~~~n~p~~ie~R-enWTetyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-H------ 249 (698)
T KOG2314|consen 179 DQFVVQDDVKTTVSVFWNSKFNEPSLIEER-ENWTETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-H------ 249 (698)
T ss_pred ceEEEEecCcceeEEEccccCCchhhhhhh-hcceeeeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-C------
Confidence 35666666665 55688654321 12221 12 235689999999999988776 77884 5565443321 2
Q ss_pred eeccCccccCCCCeEEEEEecCCcEEEEeeccccc-----cCCCCEEEEEECCCCceeeeecCCC--Cce-eEEEEccCC
Q 000731 163 DVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNS-----SKLHKRLKVWERDSGTLQASSELKA--FMG-AVLEWMPSG 234 (1325)
Q Consensus 163 ~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~-----~~~d~~irVWd~~~G~l~~t~e~~~--~~v-~~lawsPdG 234 (1325)
..+.-|.|||.-+||+|-|. .+. +.....++|||..+|.+..++.... ... .-.-||-|+
T Consensus 250 -----------p~Vq~idfSP~EkYLVT~s~-~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~Dd 317 (698)
T KOG2314|consen 250 -----------PGVQFIDFSPNEKYLVTYSP-EPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDD 317 (698)
T ss_pred -----------CCceeeecCCccceEEEecC-CccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCC
Confidence 24577999999999995442 222 1233689999999999988876422 222 456899999
Q ss_pred CeEEEEecCCCCCCCCeEEEEeCCCceEEEEEec-cC--CCCcEEEEEEccCCCeeEEEEccCCCC--eEEEEEeeCCee
Q 000731 235 ANIAAVYDRKSENKCPSIVFYERNGLERSSFDIN-EQ--IDSTVELLKWNCMSDLLAAVVRFEEYD--SVKICFFSNNHW 309 (1325)
Q Consensus 235 ~~IAs~~~d~~~~~~~~V~~~e~nGl~~~~f~l~-~~--~~~~V~~laWSpDg~~LAs~~~d~~~~--~VqLW~~~n~~w 309 (1325)
+++|.... +.|.+||.-. |.|- .. .-..|...+|||-|++||-++...... .+.|-.+-.
T Consensus 318 Ky~Arm~~-------~sisIyEtps-----f~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs--- 382 (698)
T KOG2314|consen 318 KYFARMTG-------NSISIYETPS-----FMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPS--- 382 (698)
T ss_pred ceeEEecc-------ceEEEEecCc-----eeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCc---
Confidence 99998765 4688898532 2221 00 124588999999999999998654211 344444432
Q ss_pred EEEeEEEEec-CCc--EEEEEccCCCcEEEEEecCCcEEEEEEEEeeeeCCCeeEEEEeCCEEEEeecCCcCCCCCceee
Q 000731 310 YLKYEIRYLR-RDG--IRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLF 386 (1325)
Q Consensus 310 ylkqel~~~~-~~~--~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDG~~l~lt~l~~~~vPpPm~~~ 386 (1325)
+++|+.-. -.. ..+.|-..+. +.+...-..+-..-.++. .++-+..++...||- -
T Consensus 383 --~~~iRt~nlfnVsDckLhWQk~gd-----------yLcvkvdR~tK~~~~g~f-----~n~eIfrireKdIpv----e 440 (698)
T KOG2314|consen 383 --KREIRTKNLFNVSDCKLHWQKSGD-----------YLCVKVDRHTKSKVKGQF-----SNLEIFRIREKDIPV----E 440 (698)
T ss_pred --cceeeeccceeeeccEEEeccCCc-----------EEEEEEEeeccccccceE-----eeEEEEEeeccCCCc----e
Confidence 23333200 000 2234444333 321111000000001111 123344455555542 2
Q ss_pred eecCCCCEEEEEEecCCCCCEEEEEECC---CcEEEEeCCCCCccccccCCceeEeeeccccccCcEEEEEEecCCeEEE
Q 000731 387 SLKFPTAVTEMAFYSKSSKNCLAAILSD---GCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLS 463 (1325)
Q Consensus 387 ~l~~~~~V~~VaFSpdg~~~~LAs~s~D---gti~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla 463 (1325)
.+++.+.|...+|-|.| +.+|+.+.+ .++.+|.+.+. ++.+.....+ ......++.|+|.|++++
T Consensus 441 ~velke~vi~FaWEP~g--dkF~vi~g~~~k~tvsfY~~e~~-------~~~~~lVk~~---dk~~~N~vfwsPkG~fvv 508 (698)
T KOG2314|consen 441 VVELKESVIAFAWEPHG--DKFAVISGNTVKNTVSFYAVETN-------IKKPSLVKEL---DKKFANTVFWSPKGRFVV 508 (698)
T ss_pred eeecchheeeeeeccCC--CeEEEEEccccccceeEEEeecC-------CCchhhhhhh---cccccceEEEcCCCcEEE
Confidence 35678899999999999 888887654 68888887631 1111111111 112577899999999988
Q ss_pred EEecC-CCCceEEEEee
Q 000731 464 VSHHG-PRHSNYFRGAT 479 (1325)
Q Consensus 464 ~~~~~-~~~~~~~~~~~ 479 (1325)
++.-. ....+.++..+
T Consensus 509 va~l~s~~g~l~F~D~~ 525 (698)
T KOG2314|consen 509 VAALVSRRGDLEFYDTD 525 (698)
T ss_pred EEEecccccceEEEecc
Confidence 87643 23455666553
No 242
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=98.82 E-value=5.3e-07 Score=98.69 Aligned_cols=266 Identities=15% Similarity=0.220 Sum_probs=172.5
Q ss_pred eEEEEEe--cCCc-EEEEeeccccccCCCCEEEEEE--CCCCceeeee-cCCCCceeEEEEccCC-----CeEEEEecCC
Q 000731 176 KSPISWR--GDGK-YFATLSEFCNSSKLHKRLKVWE--RDSGTLQASS-ELKAFMGAVLEWMPSG-----ANIAAVYDRK 244 (1325)
Q Consensus 176 i~~isWs--pDG~-~lAtvss~d~~~~~d~~irVWd--~~~G~l~~t~-e~~~~~v~~lawsPdG-----~~IAs~~~d~ 244 (1325)
...+.|| ||.+ ++| +++...+ ..++|.|-. -++|++.... -.|.++++.+.|.||. .+||++++
T Consensus 47 lya~~Ws~~~~~~~rla-~gS~~Ee--~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~D-- 121 (364)
T KOG0290|consen 47 LYAMNWSVRPDKKFRLA-VGSFIEE--YNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSSD-- 121 (364)
T ss_pred eeeeccccCCCcceeEE-Eeeeccc--cCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhcccC--
Confidence 4677787 5544 677 8876543 346666653 3466665543 2488899999999997 47898876
Q ss_pred CCCCCCeEEEEeCCC---ceEEEEEec----cCCCCcEEEEEEcc-CCCeeEEEEccCCCCeEEEEEeeCC-eeEEEeEE
Q 000731 245 SENKCPSIVFYERNG---LERSSFDIN----EQIDSTVELLKWNC-MSDLLAAVVRFEEYDSVKICFFSNN-HWYLKYEI 315 (1325)
Q Consensus 245 ~~~~~~~V~~~e~nG---l~~~~f~l~----~~~~~~V~~laWSp-Dg~~LAs~~~d~~~~~VqLW~~~n~-~wylkqel 315 (1325)
.+++|..+- ..+-+-.|. .+....+.+..||. |=.++.+.+-|. |-.+|++... --+.|-.+
T Consensus 122 ------~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDT---TCTiWdie~~~~~~vkTQL 192 (364)
T KOG0290|consen 122 ------FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDT---TCTIWDIETGVSGTVKTQL 192 (364)
T ss_pred ------eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccC---eEEEEEEeeccccceeeEE
Confidence 489997542 111111122 12235788999996 566777788888 9999999864 33566667
Q ss_pred EEecCCcEEEEEccCCCcEEEEEecCCcEEEEEEEE---eee----eC-------------C-CeeE-EEEeCCEEEEee
Q 000731 316 RYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIW---TTA----VM-------------E-NSTA-LVIDGSKILVTP 373 (1325)
Q Consensus 316 ~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~---~~~----~~-------------d-~~~v-~viDG~~l~lt~ 373 (1325)
..|.++...++|...+...++....||.+.+.+..- ++- |. | .-++ ..-|.+.|.+-+
T Consensus 193 IAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLD 272 (364)
T KOG0290|consen 193 IAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILD 272 (364)
T ss_pred EecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEE
Confidence 777677788999987777777777899987655421 111 11 1 1111 234777788877
Q ss_pred cCCcCCCCCceeeee-cCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccccccCCceeEeeeccccccCcEEE
Q 000731 374 LSLSLMPPPMYLFSL-KFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIH 452 (1325)
Q Consensus 374 l~~~~vPpPm~~~~l-~~~~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~ 452 (1325)
+|.- -+...+| .|.+.|+.++|.|.. ...|++++.|..+-+|++..... -.+. .+.+.-.....|.+
T Consensus 273 iR~P----~tpva~L~~H~a~VNgIaWaPhS-~~hictaGDD~qaliWDl~q~~~---~~~~----dPilay~a~~EVNq 340 (364)
T KOG0290|consen 273 IRVP----CTPVARLRNHQASVNGIAWAPHS-SSHICTAGDDCQALIWDLQQMPR---ENGE----DPILAYTAGGEVNQ 340 (364)
T ss_pred ecCC----CcceehhhcCcccccceEecCCC-CceeeecCCcceEEEEecccccc---cCCC----Cchhhhhccceeee
Confidence 7642 1222356 499999999999987 38999999999999999975211 0010 01111112247999
Q ss_pred EEEec-CCeEEEEEec
Q 000731 453 LIWLG-SHLLLSVSHH 467 (1325)
Q Consensus 453 l~~~~-d~~lla~~~~ 467 (1325)
+.|++ .+..+|++.+
T Consensus 341 i~Ws~~~~Dwiai~~~ 356 (364)
T KOG0290|consen 341 IQWSSSQPDWIAICFG 356 (364)
T ss_pred eeecccCCCEEEEEec
Confidence 99985 4556777654
No 243
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.79 E-value=9.5e-06 Score=98.55 Aligned_cols=91 Identities=18% Similarity=0.245 Sum_probs=54.9
Q ss_pred eeecCceeEEEeccCccccceEEEEEecCCeEEEEEcCccccccccccccccccccCccccccccccccccCCCEEEEEe
Q 000731 605 IVCNNCSSFSFYSKSAGQAMSHLILATKQNLLFIVDISDILHGELALKYENFTHVGNRRKEENISYINIWERGAKVIGVL 684 (1325)
Q Consensus 605 ~~~~~~tSf~~~~~~~~~~~~~Ll~TT~~h~l~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~de~~R~vErGs~iV~~~ 684 (1325)
++...|.|....++ -++|||.. .|++ -++. .-..++.+++---|+++.
T Consensus 194 E~~~~IkSg~W~~d-------~fiYtT~~-~lkY-l~~G-----------------------e~~~i~~ld~~~yllgy~ 241 (443)
T PF04053_consen 194 EISERIKSGCWVED-------CFIYTTSN-HLKY-LVNG-----------------------ETGIIAHLDKPLYLLGYL 241 (443)
T ss_dssp EE-S--SEEEEETT-------EEEEE-TT-EEEE-EETT-----------------------EEEEEEE-SS--EEEEEE
T ss_pred EecceeEEEEEEcC-------EEEEEcCC-eEEE-EEcC-----------------------CcceEEEcCCceEEEEEE
Confidence 44668999999999 99999988 6666 2221 013457888889999999
Q ss_pred CCCCcEEEEEeCCCceeeccchhhhHHHHHHHHhcccHHHHHHHH
Q 000731 685 HGDEAAVILQTNRGNLECMYPRKLVLTSIVNALIQGRFRDALVMV 729 (1325)
Q Consensus 685 p~~~~~vVLQmpRGNLEtI~PR~lvL~~i~~~l~~~~y~~Af~~~ 729 (1325)
|.. -+|.+-..-||+..+ +=.+..-.-+.+|-+++|.++..+.
T Consensus 242 ~~~-~~ly~~Dr~~~v~~~-~ld~~~~~fk~av~~~d~~~v~~~i 284 (443)
T PF04053_consen 242 PKE-NRLYLIDRDGNVISY-ELDLSELEFKTAVLRGDFEEVLRMI 284 (443)
T ss_dssp TTT-TEEEEE-TT--EEEE-E--HHHHHHHHHHHTT-HHH-----
T ss_pred ccC-CEEEEEECCCCEEEE-EECHHHHHHHHHHHcCChhhhhhhh
Confidence 987 789999999999988 4444444567777888888875555
No 244
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.78 E-value=3.1e-06 Score=113.31 Aligned_cols=261 Identities=14% Similarity=0.055 Sum_probs=154.8
Q ss_pred ceeEEeeecCCCEEEEEeC-CCcEEEEecccccccccceeecccc-cccccc---C--CCCCCEEEEEEccCCCEEEEEE
Q 000731 22 ILQFSALDIEQNRLFFASS-ANNIYSAQLSSFQNERASIKTAISA-EIEHID---L--EPGDSITAFDYLMEKEALIVGT 94 (1325)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~-~~~i~~~~~~~~~~~~~~~~~~l~~-~l~~~~---~--~~~~~V~~v~~spdg~~La~as 94 (1325)
.+..+++|..++.||++.. ++.|..+|.+ +.. +.++.. +-.+.. + ..-..+.+|++.+++..|.++.
T Consensus 569 ~P~gvavd~~~g~lyVaDs~n~rI~v~d~~---G~~---i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaD 642 (1057)
T PLN02919 569 FPGKLAIDLLNNRLFISDSNHNRIVVTDLD---GNF---IVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVAD 642 (1057)
T ss_pred CCceEEEECCCCeEEEEECCCCeEEEEeCC---CCE---EEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEe
Confidence 3457899999999999854 6679999982 221 111111 100000 0 0014579999999998776654
Q ss_pred -CCCcEEEEeCCCCeEEEe-ce------ec----------CcEEEEEEcC-CCCeEEEEeCCccEEEEeecCceeeeeec
Q 000731 95 -SSGLLLLHSVDGNATEVV-GR------VE----------GGVRFISPSP-DGDLLGVTTGFGQILVMTHDWDLLYENPL 155 (1325)
Q Consensus 95 -~dG~I~lw~~~~~~~e~v-g~------~~----------~~I~~~awSP-DG~~LA~~s~dgtV~l~s~~~d~~~e~~l 155 (1325)
.++.|+.+|..++.+..+ |. .. ..-+.++|+| +|.+.++.+++++|.+|+..-..+.....
T Consensus 643 t~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G 722 (1057)
T PLN02919 643 TENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSG 722 (1057)
T ss_pred CCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEec
Confidence 456789999988776533 21 00 1235789999 56666777788899888643222221111
Q ss_pred cccC---CCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeee--cC----------
Q 000731 156 EELA---EGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASS--EL---------- 220 (1325)
Q Consensus 156 ~~~~---~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~--e~---------- 220 (1325)
.... .+.......| .....|+|+|||.++. ++. .++++|++||..+|...... .+
T Consensus 723 ~G~~~~~~g~~~~~~~~----~~P~GIavspdG~~LY-VAD-----s~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG 792 (1057)
T PLN02919 723 DGYERNLNGSSGTSTSF----AQPSGISLSPDLKELY-IAD-----SESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFG 792 (1057)
T ss_pred CCccccCCCCccccccc----cCccEEEEeCCCCEEE-EEE-----CCCCeEEEEECCCCcEEEEEecccccCccccccc
Confidence 0000 0000000111 2346799999998655 442 34689999998666532110 00
Q ss_pred -CCC--------ceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeCCCceEEEEEeccC-----------CCCcEEEEEE
Q 000731 221 -KAF--------MGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQ-----------IDSTVELLKW 280 (1325)
Q Consensus 221 -~~~--------~v~~lawsPdG~~IAs~~~d~~~~~~~~V~~~e~nGl~~~~f~l~~~-----------~~~~V~~laW 280 (1325)
.++ .-..++|+|+|+++++-.. .+.|+.|+.++.....+.-.+. .-.....|++
T Consensus 793 ~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~------N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIav 866 (1057)
T PLN02919 793 DHDGVGSEVLLQHPLGVLCAKDGQIYVADSY------NHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLAL 866 (1057)
T ss_pred CCCCchhhhhccCCceeeEeCCCcEEEEECC------CCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEE
Confidence 011 1258999999997666544 4789999976543322211110 0124678999
Q ss_pred ccCCCeeEEEEccCCCCeEEEEEeeCC
Q 000731 281 NCMSDLLAAVVRFEEYDSVKICFFSNN 307 (1325)
Q Consensus 281 SpDg~~LAs~~~d~~~~~VqLW~~~n~ 307 (1325)
++||+++++-+.+. +|++|+..+.
T Consensus 867 d~dG~lyVaDt~Nn---~Irvid~~~~ 890 (1057)
T PLN02919 867 GENGRLFVADTNNS---LIRYLDLNKG 890 (1057)
T ss_pred eCCCCEEEEECCCC---EEEEEECCCC
Confidence 99999877766665 9999998764
No 245
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=98.78 E-value=1.2e-08 Score=123.39 Aligned_cols=255 Identities=15% Similarity=0.092 Sum_probs=174.6
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEE
Q 000731 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1325)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~V~~v~~spdg~~La~as~dG~I~l 101 (1325)
.+.|..+|.-+-.|+.+|+|..+..|.. .+..- ..++++| .+.|++++-+...-.+|++|.|..|++
T Consensus 192 aVyca~fDrtg~~Iitgsdd~lvKiwS~--et~~~-------lAs~rGh----s~ditdlavs~~n~~iaaaS~D~vIrv 258 (1113)
T KOG0644|consen 192 AVYCAIFDRTGRYIITGSDDRLVKIWSM--ETARC-------LASCRGH----SGDITDLAVSSNNTMIAAASNDKVIRV 258 (1113)
T ss_pred heeeeeeccccceEeecCccceeeeeec--cchhh-------hccCCCC----ccccchhccchhhhhhhhcccCceEEE
Confidence 5778889999999999999998888875 33321 1225565 468999999999999999999999999
Q ss_pred EeCCCCeE-EEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeeeccccC-CC-ceec---cC---ccc--
Q 000731 102 HSVDGNAT-EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELA-EG-FDVH---EP---ELS-- 170 (1325)
Q Consensus 102 w~~~~~~~-e~vg~~~~~I~~~awSPDG~~LA~~s~dgtV~l~s~~~d~~~e~~l~~~~-~~-~~Vs---~t---qf~-- 170 (1325)
|.+.++.. .++-.|.+.|++++|||-. +.+.|||+.+|+..|+++.-.+-.... .. ..++ +. .|.
T Consensus 259 Wrl~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tg 334 (1113)
T KOG0644|consen 259 WRLPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTG 334 (1113)
T ss_pred EecCCCchHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccc
Confidence 99987653 4444469999999999985 678999999999778876544222111 11 1111 11 111
Q ss_pred -----cCCCCeEEEEEecCCcEEEEeeccccc-----cCCCCEEEEEECCCCceeeeecCCCCceeEEEEccCCCeEE-E
Q 000731 171 -----SSFSFKSPISWRGDGKYFATLSEFCNS-----SKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIA-A 239 (1325)
Q Consensus 171 -----~~~~~i~~isWspDG~~lAtvss~d~~-----~~~d~~irVWd~~~G~l~~t~e~~~~~v~~lawsPdG~~IA-s 239 (1325)
...-....++|+..+-.|++.++ +.. +..+..+++|+..+|.+...+.+|...+..+.++|=...|| +
T Consensus 335 s~d~ea~n~e~~~l~~~~~~lif~t~ss-d~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~ms 413 (1113)
T KOG0644|consen 335 SRDGEARNHEFEQLAWRSNLLIFVTRSS-DLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMS 413 (1113)
T ss_pred cCCcccccchhhHhhhhccceEEEeccc-cccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhh
Confidence 11112345667666666663332 110 12346789999999999999999999999999999888776 4
Q ss_pred EecCCCCCCCCeEEEEeC-CCceEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeC
Q 000731 240 VYDRKSENKCPSIVFYER-NGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSN 306 (1325)
Q Consensus 240 ~~~d~~~~~~~~V~~~e~-nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~n 306 (1325)
++.| +...+|+. .|.....+.. + .+.+..-+||+||+.+|..-.-+ .++|..++.
T Consensus 414 ag~d------gst~iwdi~eg~pik~y~~--g-h~kl~d~kFSqdgts~~lsd~hg---ql~i~g~gq 469 (1113)
T KOG0644|consen 414 AGYD------GSTIIWDIWEGIPIKHYFI--G-HGKLVDGKFSQDGTSIALSDDHG---QLYILGTGQ 469 (1113)
T ss_pred ccCC------CceEeeecccCCcceeeec--c-cceeeccccCCCCceEecCCCCC---ceEEeccCC
Confidence 4554 45667773 3433332222 1 35677889999999988765444 566666553
No 246
>KOG4328 consensus WD40 protein [Function unknown]
Probab=98.77 E-value=1.3e-07 Score=108.96 Aligned_cols=200 Identities=14% Similarity=0.111 Sum_probs=136.6
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCC-CEEEEEECCCcEE
Q 000731 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEK-EALIVGTSSGLLL 100 (1325)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~V~~v~~spdg-~~La~as~dG~I~ 100 (1325)
.+..+-+..+...++++..=+..-.||. .+++.+..- ++-| .-+|.+|++.|-- ..||+++-|++.+
T Consensus 281 ~fs~~d~~~e~~~vl~~~~~G~f~~iD~--R~~~s~~~~------~~lh----~kKI~sv~~NP~~p~~laT~s~D~T~k 348 (498)
T KOG4328|consen 281 WFSSLDFSAESRSVLFGDNVGNFNVIDL--RTDGSEYEN------LRLH----KKKITSVALNPVCPWFLATASLDQTAK 348 (498)
T ss_pred eeeeccccCCCccEEEeecccceEEEEe--ecCCccchh------hhhh----hcccceeecCCCCchheeecccCccee
Confidence 3444556677888888877666778888 454431111 2212 2489999999965 5789999999999
Q ss_pred EEeCCC---Ce---EEEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEee----cCceeeeeeccccCCCceeccCccc
Q 000731 101 LHSVDG---NA---TEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTH----DWDLLYENPLEELAEGFDVHEPELS 170 (1325)
Q Consensus 101 lw~~~~---~~---~e~vg~~~~~I~~~awSPDG~~LA~~s~dgtV~l~s~----~~d~~~e~~l~~~~~~~~Vs~tqf~ 170 (1325)
|||+.. +. +..+. |...|.++.|||+|-.|++.+.|.+|.||+. .|+.......|....++++
T Consensus 349 IWD~R~l~~K~sp~lst~~-HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~Rwl------ 421 (498)
T KOG4328|consen 349 IWDLRQLRGKASPFLSTLP-HRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWL------ 421 (498)
T ss_pred eeehhhhcCCCCcceeccc-ccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccCcccccc------
Confidence 999853 21 33443 5788999999999999999999999999976 4555444444443333444
Q ss_pred cCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeee-ecCCCCce-eEEEEccCCCeEEEEecCCCCCC
Q 000731 171 SSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQAS-SELKAFMG-AVLEWMPSGANIAAVYDRKSENK 248 (1325)
Q Consensus 171 ~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t-~e~~~~~v-~~lawsPdG~~IAs~~~d~~~~~ 248 (1325)
......|-||-.+|+ ++-. -+.|-|+|...|++... ..+....| .-.+|+|-+..+|+|+.-
T Consensus 422 ----T~fKA~W~P~~~li~-vg~~------~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s----- 485 (498)
T KOG4328|consen 422 ----TPFKAAWDPDYNLIV-VGRY------PRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNS----- 485 (498)
T ss_pred ----cchhheeCCCccEEE-Eecc------CcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCc-----
Confidence 245789999999999 7754 36799999955654443 22222223 446999999977766543
Q ss_pred CCeEEEEe
Q 000731 249 CPSIVFYE 256 (1325)
Q Consensus 249 ~~~V~~~e 256 (1325)
.+.|-+|-
T Consensus 486 ~Gki~vft 493 (498)
T KOG4328|consen 486 SGKIYVFT 493 (498)
T ss_pred cceEEEEe
Confidence 34565554
No 247
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.74 E-value=8.2e-06 Score=96.69 Aligned_cols=323 Identities=14% Similarity=0.188 Sum_probs=181.4
Q ss_pred cEEEEeCCCCe--EEEecee--cCcEEEEEEcCCCCeEEEEeCCccEEEEeec-CceeeeeeccccCCCceeccCccccC
Q 000731 98 LLLLHSVDGNA--TEVVGRV--EGGVRFISPSPDGDLLGVTTGFGQILVMTHD-WDLLYENPLEELAEGFDVHEPELSSS 172 (1325)
Q Consensus 98 ~I~lw~~~~~~--~e~vg~~--~~~I~~~awSPDG~~LA~~s~dgtV~l~s~~-~d~~~e~~l~~~~~~~~Vs~tqf~~~ 172 (1325)
.+.+|+.-+.. ....+.. +...+..++||+|+++|..+++ .|+|.+.. .+++....+
T Consensus 12 ~~~l~~~~~~~~~~~~f~~~~~~~~~~v~~~S~~G~lfA~~~~~-~v~i~~~~~~~~~lt~~~----------------- 73 (566)
T KOG2315|consen 12 GFYLFNGPGSKDAVTVFEQNKTSRPCNVFAYSNNGRLFAYSDNQ-VVKVFEIATLKVVLCVEL----------------- 73 (566)
T ss_pred eeEEeccCCccccccccccCCCCCcceeEEEcCCCcEEEEEcCC-eEEEEEccCCcEEEEecc-----------------
Confidence 47788765421 1122221 2336788999999999998876 45554321 111111111
Q ss_pred CCCeEEEEEecCCcEEEEeeccccc------cCCCCEEEEEECCCCceeeeecCCCCceeEEEEccCCCeEEEEecCCCC
Q 000731 173 FSFKSPISWRGDGKYFATLSEFCNS------SKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSE 246 (1325)
Q Consensus 173 ~~~i~~isWspDG~~lAtvss~d~~------~~~d~~irVWd~~~G~l~~t~e~~~~~v~~lawsPdG~~IAs~~~d~~~ 246 (1325)
.....+-|||-|.|+. . ..+- ..+..-+++|+.++|...+.........+.+.||+|-.+.|=..
T Consensus 74 -~~~~~L~fSP~g~yL~-T--~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~arlv----- 144 (566)
T KOG2315|consen 74 -KKTYDLLFSPKGNYLL-T--WEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQNGWVPQFSIDESLAARLV----- 144 (566)
T ss_pred -ceeeeeeecccccccc-c--ccccccccCCCCCCCceeeeeeccceehhheehhhhcCcccccccchhhhhhhh-----
Confidence 1347899999999986 2 1111 01224588999988776665433222225889999988765322
Q ss_pred CCCCeEEEEeCCCceEEEEEeccCCCCcEEEEEEccCCC--eeEEEEccCCC--CeEEEEEee--CCeeEEEeEEEEecC
Q 000731 247 NKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSD--LLAAVVRFEEY--DSVKICFFS--NNHWYLKYEIRYLRR 320 (1325)
Q Consensus 247 ~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~--~LAs~~~d~~~--~~VqLW~~~--n~~wylkqel~~~~~ 320 (1325)
.+.|.||+.++-..-.-.|+ ...|..+++||-++ .+|+-.-..+| ..||||... +.|--+ ..-.|...
T Consensus 145 --~nev~f~~~~~f~~~~~kl~---~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~-a~ksFFka 218 (566)
T KOG2315|consen 145 --SNEVQFYDLGSFKTIQHKLS---VSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPV-ANKSFFKA 218 (566)
T ss_pred --cceEEEEecCCccceeeeee---ccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchh-hhcccccc
Confidence 35799999776322221232 34688999999866 44443322211 279999976 333111 11123333
Q ss_pred CcEEEEEccCCCcEEEEE--------------------ecCCcE---------EEEEEEEeeeeCCCeeEEEE--eCCEE
Q 000731 321 DGIRFMWHPTKPLQLICW--------------------TLDGQI---------TTYNFIWTTAVMENSTALVI--DGSKI 369 (1325)
Q Consensus 321 ~~~~v~Wsp~~~~~L~~~--------------------~~~g~~---------~~~~~~~~~~~~d~~~v~vi--DG~~l 369 (1325)
+.+.+.|.+-+.-.|.+. +.+|.- -++++.|+.+ ..-.++|- =-.++
T Consensus 219 dkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s--~~EF~VvyGfMPAkv 296 (566)
T KOG2315|consen 219 DKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPS--GREFAVVYGFMPAKV 296 (566)
T ss_pred ceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCCCceEEEECCC--CCEEEEEEecccceE
Confidence 456777886664333332 221111 1144455432 21122221 12334
Q ss_pred EEeecCCcCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECC---CcEEEEeCCCCCccccccCCceeEeeeccccc
Q 000731 370 LVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSD---GCLCVVDLPAPDMLEDLEGTEFVVEACISETA 446 (1325)
Q Consensus 370 ~lt~l~~~~vPpPm~~~~l~~~~~V~~VaFSpdg~~~~LAs~s~D---gti~lw~~~~~~~~~~~~g~~~~~~~~~~~~~ 446 (1325)
.+.+++..+| +.+ -+++=+++-|+|.| ++|+.++-+ |.+.+||+.+..++..+.
T Consensus 297 tifnlr~~~v------~df-~egpRN~~~fnp~g--~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~-------------- 353 (566)
T KOG2315|consen 297 TIFNLRGKPV------FDF-PEGPRNTAFFNPHG--NIILLAGFGNLPGDMEVWDVPNRKLIAKFK-------------- 353 (566)
T ss_pred EEEcCCCCEe------EeC-CCCCccceEECCCC--CEEEEeecCCCCCceEEEeccchhhccccc--------------
Confidence 4445544322 111 24556889999999 888887754 799999998754441111
Q ss_pred cCcEEEEEEecCCeEEEEEecCC----CCceEEEEe
Q 000731 447 FGSVIHLIWLGSHLLLSVSHHGP----RHSNYFRGA 478 (1325)
Q Consensus 447 ~~~v~~l~~~~d~~lla~~~~~~----~~~~~~~~~ 478 (1325)
.....-+.|+|||.++.++...+ .+.+.+|.+
T Consensus 354 a~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhy 389 (566)
T KOG2315|consen 354 AANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHY 389 (566)
T ss_pred cCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEe
Confidence 11344568999999998876532 267888887
No 248
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=98.74 E-value=8.9e-07 Score=99.60 Aligned_cols=275 Identities=13% Similarity=0.117 Sum_probs=167.8
Q ss_pred cCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCC------ceeee-ecCCCCceeEEEEccCCCeEEEEecC
Q 000731 171 SSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSG------TLQAS-SELKAFMGAVLEWMPSGANIAAVYDR 243 (1325)
Q Consensus 171 ~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G------~l~~t-~e~~~~~v~~lawsPdG~~IAs~~~d 243 (1325)
+|.+-|..|.||.+|++|| ++ +.|+.++||+.++. +.+.. .++|...+.+|+|.-....+.||.++
T Consensus 54 ~H~GCiNAlqFS~N~~~L~-SG------GDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~ 126 (609)
T KOG4227|consen 54 EHTGCINALQFSHNDRFLA-SG------GDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERW 126 (609)
T ss_pred hhccccceeeeccCCeEEe-ec------CCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCc
Confidence 6778899999999999999 65 35799999998432 22222 34566788999999988899999885
Q ss_pred CCCCCCCeEEEEeCCCceEEEEEec-cCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeEEEeEEEEecCCc
Q 000731 244 KSENKCPSIVFYERNGLERSSFDIN-EQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDG 322 (1325)
Q Consensus 244 ~~~~~~~~V~~~e~nGl~~~~f~l~-~~~~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~n~~wylkqel~~~~~~~ 322 (1325)
.+|...+...... .+... ....+.|+.+.-+|--.+||+.+.++ .|-+||.....- .-++....+.+
T Consensus 127 ------~~VI~HDiEt~qs-i~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~---~V~~~D~Rd~~~--~~~~~~~AN~~ 194 (609)
T KOG4227|consen 127 ------GTVIKHDIETKQS-IYVANENNNRGDVYHMDQHPTDNTLIVVTRAK---LVSFIDNRDRQN--PISLVLPANSG 194 (609)
T ss_pred ------ceeEeeeccccee-eeeecccCcccceeecccCCCCceEEEEecCc---eEEEEeccCCCC--CCceeeecCCC
Confidence 4577777542211 11111 12235799999999999999999998 899999753210 01333333333
Q ss_pred ---EEEEEccCCCcEEEEEecCCcEEEEEEEEeee---------------eCC----CeeEEEEeCCEEEEeecCCcCCC
Q 000731 323 ---IRFMWHPTKPLQLICWTLDGQITTYNFIWTTA---------------VME----NSTALVIDGSKILVTPLSLSLMP 380 (1325)
Q Consensus 323 ---~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~---------------~~d----~~~v~viDG~~l~lt~l~~~~vP 380 (1325)
.++.|+|+.|..|.+.+..|... +|+.- +.. .+......|+.++ .++...
T Consensus 195 ~~F~t~~F~P~~P~Li~~~~~~~G~~----~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~m--siRR~~-- 266 (609)
T KOG4227|consen 195 KNFYTAEFHPETPALILVNSETGGPN----VFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFM--SIRRGK-- 266 (609)
T ss_pred ccceeeeecCCCceeEEeccccCCCC----ceeeccccchHHhhhccccCcccchhhhheeeCCCCCeeh--hhhccC--
Confidence 67899999998777766555443 23322 110 0111122333322 222221
Q ss_pred CCcee-------eeecCC---------CCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCcc-c-cccCCc-------
Q 000731 381 PPMYL-------FSLKFP---------TAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDML-E-DLEGTE------- 435 (1325)
Q Consensus 381 pPm~~-------~~l~~~---------~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~~~~~~~~-~-~~~g~~------- 435 (1325)
||..+ ..++++ ..+.+..|--|- .+|+++.+-.|++|.++..... + +.-|+.
T Consensus 267 ~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~---~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~ 343 (609)
T KOG4227|consen 267 CPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDY---TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSE 343 (609)
T ss_pred CCEEeeeecccceeEeccCCCCcceeeeeeeeeeeecce---eeeccCcccceEEEecCCCccccCccccCcchhhCchh
Confidence 22211 112211 135677787664 6999999999999998642111 0 001210
Q ss_pred eeEee--eccccccCcEEEEEEecCCeEEEEEecCCCCceEEEE
Q 000731 436 FVVEA--CISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRG 477 (1325)
Q Consensus 436 ~~~~~--~~~~~~~~~v~~l~~~~d~~lla~~~~~~~~~~~~~~ 477 (1325)
+.+.. ..+.+|...+.++.|+|-..+|+++. ..+.+++|.
T Consensus 344 ~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSG--VE~~~KlWS 385 (609)
T KOG4227|consen 344 IFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSG--VENSFKLWS 385 (609)
T ss_pred heecceeEEEecccccccceeecCCcceEeccc--hhhheeccc
Confidence 11111 12256677889999999888776543 336778885
No 249
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.66 E-value=5.2e-05 Score=86.41 Aligned_cols=248 Identities=18% Similarity=0.206 Sum_probs=153.9
Q ss_pred ceeEEeeecCCCEEEEEeCC---CcE--EEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEE-C
Q 000731 22 ILQFSALDIEQNRLFFASSA---NNI--YSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGT-S 95 (1325)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~---~~i--~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~V~~v~~spdg~~La~as-~ 95 (1325)
.++.++|++++..||++..+ +.| |.||. ..+.. + +......++.....|+.+++|+.|.+|. .
T Consensus 41 nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~--~~G~L----t-----~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~ 109 (346)
T COG2706 41 NPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDP--DDGRL----T-----FLNRQTLPGSPPCYVSVDEDGRFVFVANYH 109 (346)
T ss_pred CCceEEECCCCCEEEEEEecCCcCcEEEEEEcC--CCCeE----E-----EeeccccCCCCCeEEEECCCCCEEEEEEcc
Confidence 78999999999999999654 445 45554 23332 2 2223344566779999999999998775 5
Q ss_pred CCcEEEEeCCC-CeEE-E--eceecCc----------EEEEEEcCCCCeEEEEe--CCccEEEEeecCceeeeeeccccC
Q 000731 96 SGLLLLHSVDG-NATE-V--VGRVEGG----------VRFISPSPDGDLLGVTT--GFGQILVMTHDWDLLYENPLEELA 159 (1325)
Q Consensus 96 dG~I~lw~~~~-~~~e-~--vg~~~~~----------I~~~awSPDG~~LA~~s--~dgtV~l~s~~~d~~~e~~l~~~~ 159 (1325)
.|.|.++-++. +.+. . +-.|.++ +-++.+.|||++|++.. .| .|.++.-+ | -.+....
T Consensus 110 ~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~D-ri~~y~~~-d----g~L~~~~ 183 (346)
T COG2706 110 SGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTD-RIFLYDLD-D----GKLTPAD 183 (346)
T ss_pred CceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCc-eEEEEEcc-c----Ccccccc
Confidence 68888887754 3321 1 1123444 88999999999999884 44 45554322 1 1111110
Q ss_pred CCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCC--Cceee--e---ec---CCCCceeEEE
Q 000731 160 EGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDS--GTLQA--S---SE---LKAFMGAVLE 229 (1325)
Q Consensus 160 ~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~--G~l~~--t---~e---~~~~~v~~la 229 (1325)
+..+ ....+-..|.|+|+|++.=.+.- -+.+|-||..+. |++.. + +. ..+.+..+|.
T Consensus 184 ------~~~v-~~G~GPRHi~FHpn~k~aY~v~E------L~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIh 250 (346)
T COG2706 184 ------PAEV-KPGAGPRHIVFHPNGKYAYLVNE------LNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIH 250 (346)
T ss_pred ------cccc-CCCCCcceEEEcCCCcEEEEEec------cCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEE
Confidence 0011 11234478999999996542332 357999998744 33211 1 11 1233458899
Q ss_pred EccCCCeEEEEecCCCCCCCCeEEEEe--CCCceEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeC
Q 000731 230 WMPSGANIAAVYDRKSENKCPSIVFYE--RNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSN 306 (1325)
Q Consensus 230 wsPdG~~IAs~~~d~~~~~~~~V~~~e--~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~n 306 (1325)
.+|||++|.++-+. -..|..|. .+|-+..-+.....+...-....++|+|++|+++..++ +.|.++.++.
T Consensus 251 is~dGrFLYasNRg-----~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~s--d~i~vf~~d~ 322 (346)
T COG2706 251 ISPDGRFLYASNRG-----HDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKS--DNITVFERDK 322 (346)
T ss_pred ECCCCCEEEEecCC-----CCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCC--CcEEEEEEcC
Confidence 99999999888664 24677775 34332221111111122367899999999999998876 3577777764
No 250
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.64 E-value=3.1e-05 Score=86.43 Aligned_cols=231 Identities=14% Similarity=0.150 Sum_probs=145.9
Q ss_pred CEEEEEEccCCCEEEEEECCCcEEEEeCCCC-eEEEeceecCc--EEEEEEcCCCCeEEEEeCCc-------cEEEEeec
Q 000731 77 SITAFDYLMEKEALIVGTSSGLLLLHSVDGN-ATEVVGRVEGG--VRFISPSPDGDLLGVTTGFG-------QILVMTHD 146 (1325)
Q Consensus 77 ~V~~v~~spdg~~La~as~dG~I~lw~~~~~-~~e~vg~~~~~--I~~~awSPDG~~LA~~s~dg-------tV~l~s~~ 146 (1325)
...+++|..|..-+|+|.++| .++|+.+-- +......+++| |.-|=| -.++||.+++-+ .|.+|+..
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLf--R~N~laLVGGg~~pky~pNkviIWDD~ 83 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLF--RSNYLALVGGGSRPKYPPNKVIIWDDL 83 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhh--hhceEEEecCCCCCCCCCceEEEEecc
Confidence 567799999999999999888 799987641 10011112222 222222 236788887644 67787511
Q ss_pred -CceeeeeeccccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECC-CCceeeeecCCCCc
Q 000731 147 -WDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERD-SGTLQASSELKAFM 224 (1325)
Q Consensus 147 -~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~-~G~l~~t~e~~~~~ 224 (1325)
..++.|..+. ..|..|..++|- ++.+- ..+|.||.-. +-+++...+....+
T Consensus 84 k~~~i~el~f~-----------------~~I~~V~l~r~r--iVvvl--------~~~I~VytF~~n~k~l~~~et~~NP 136 (346)
T KOG2111|consen 84 KERCIIELSFN-----------------SEIKAVKLRRDR--IVVVL--------ENKIYVYTFPDNPKLLHVIETRSNP 136 (346)
T ss_pred cCcEEEEEEec-----------------cceeeEEEcCCe--EEEEe--------cCeEEEEEcCCChhheeeeecccCC
Confidence 1222333222 456888888875 44132 3799999863 34555555433322
Q ss_pred eeEEEEccC--CCeEEEEecCCCCCCCCeEEEEeCCCceEE-EEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEE
Q 000731 225 GAVLEWMPS--GANIAAVYDRKSENKCPSIVFYERNGLERS-SFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKI 301 (1325)
Q Consensus 225 v~~lawsPd--G~~IAs~~~d~~~~~~~~V~~~e~nGl~~~-~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~VqL 301 (1325)
-.-.+..|. -.+||..+.. .+.|.+-+.+-...+ .+.++.| +..|..++.|-+|++||+++..|. .|||
T Consensus 137 kGlC~~~~~~~k~~LafPg~k-----~GqvQi~dL~~~~~~~p~~I~AH-~s~Iacv~Ln~~Gt~vATaStkGT--LIRI 208 (346)
T KOG2111|consen 137 KGLCSLCPTSNKSLLAFPGFK-----TGQVQIVDLASTKPNAPSIINAH-DSDIACVALNLQGTLVATASTKGT--LIRI 208 (346)
T ss_pred CceEeecCCCCceEEEcCCCc-----cceEEEEEhhhcCcCCceEEEcc-cCceeEEEEcCCccEEEEeccCcE--EEEE
Confidence 223445554 3467877775 467877775433331 2334443 578999999999999999998772 6999
Q ss_pred EEeeCCeeEEEeEEEEecC--CcEEEEEccCCCcEEEEEecCCcEEEEE
Q 000731 302 CFFSNNHWYLKYEIRYLRR--DGIRFMWHPTKPLQLICWTLDGQITTYN 348 (1325)
Q Consensus 302 W~~~n~~wylkqel~~~~~--~~~~v~Wsp~~~~~L~~~~~~g~~~~~~ 348 (1325)
||+.+.+ +.+|++-..+ +..+++|||+... |++.+..|++++..
T Consensus 209 Fdt~~g~--~l~E~RRG~d~A~iy~iaFSp~~s~-LavsSdKgTlHiF~ 254 (346)
T KOG2111|consen 209 FDTEDGT--LLQELRRGVDRADIYCIAFSPNSSW-LAVSSDKGTLHIFS 254 (346)
T ss_pred EEcCCCc--EeeeeecCCchheEEEEEeCCCccE-EEEEcCCCeEEEEE
Confidence 9999876 4567763222 2378999999876 78888788886543
No 251
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=98.64 E-value=1.9e-06 Score=104.26 Aligned_cols=242 Identities=17% Similarity=0.158 Sum_probs=172.9
Q ss_pred HHHHHHHHhhccHHHHHHHHHhccChhH--HHHHHH-HhcCCcccchHhHHHHhcCCchhccccHHHhhcCHHHHHHHHH
Q 000731 879 EEALKHLLWLADSEAVYEAALGLYDLNL--AAIVAL-NSQRDPKEFLPYLQELESMPPLLMRYTIDLRLQRFENALKHIV 955 (1325)
Q Consensus 879 e~alkyl~~L~d~n~Ly~~ALg~YD~~l--al~VAq-~sqkDPkeYLpfL~~L~~l~~~~~~~~Id~~L~rye~Al~~l~ 955 (1325)
-++|++..-.-+.-..|+.|||...-.+ .-.|.. -.|+|- -||+-.|.+.+...|++.|..|+|.-.+++.|..
T Consensus 864 ~e~lrrkf~Id~yl~~ye~ALghl~E~~n~~~Ev~~yi~~hdl---y~~~l~lyrYd~e~Qk~~~nifa~~l~~n~~~~~ 940 (1243)
T COG5290 864 LEALRRKFSIDNYLSIYESALGHLNEDLNVIREVMKYICRHDL---YDFLLLLYRYDGELQKFKINIFAGNLVDNLYHIS 940 (1243)
T ss_pred hHHHHhHhchhhhHHHHHHHHHhhHhHHHHHHHHHHHHHhccc---hHHHHHHHHhhhhhhhhhHHHHHHHHHhhhhhHH
Confidence 4579999888899999999999998655 333322 234444 4777888899999999999999999888888877
Q ss_pred Hc------CCCcHHHHHHHHHHHhcChHHHHhhc--CCcHHHHHHHHHHHHHHhccccHHHHHHHHHHcCCHHHHHHHHH
Q 000731 956 SM------GDSYHADCLNLMKKYAQLFPLGLKLI--TDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSSLEKAMKAYR 1027 (1325)
Q Consensus 956 ~~------g~~~~d~ale~~~~~~~ly~~AL~L~--~d~~~~~~i~~~~a~~L~~~~~~~eAa~~y~~ag~~ekAl~~y~ 1027 (1325)
++ |. .-||+..++.. .+|.+++.+. ..+.+ .+..|+-|.+. +...+.++|+-+++...|.
T Consensus 941 aa~aye~~gK--~~Ea~gay~sA-~mwrec~si~~q~~~~e----~~~~AE~L~S~-----l~ve~R~~~da~~i~l~yl 1008 (1243)
T COG5290 941 AAKAYEVEGK--YIEAHGAYDSA-LMWRECGSISTQEKGYE----FNLCAELLPSD-----LLVEFRKAGDAEKILLTYL 1008 (1243)
T ss_pred HHHHHHHHHH--HHHHHHHHHHH-HHHHHHhhHHhhhcchH----HHHHHHhhhhh-----HHHHHHHhcCHHHHHHHHH
Confidence 65 33 57888888888 8888888877 34444 45556666552 4444555555566665555
Q ss_pred HcCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcCCHHHHHHHHHHhcCHHHHHHHHHhcCCch
Q 000731 1028 ASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCGDVTNGISLLIDARDWEEALRVAFMHRRED 1107 (1325)
Q Consensus 1028 ~ag~W~~al~la~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~yl~d~e~Av~~~~~~~~w~eA~rLa~~~~~~d 1107 (1325)
..-.|..|+.+-.. .++ ...+..++..+.+.-++-+|..+-+.|++.+|.|.+.|.+.+.-.+++|++...+.
T Consensus 1009 ~N~~eava~~ckgs-~y~----ea~~~a~~s~~~e~~k~~~~~~LgE~Fg~~~El~ad~~~qikSq~~rlrvlr~kk~-- 1081 (1243)
T COG5290 1009 ENLYEAVAMDCKGS-EYR----EAFCEAMVSRLVESEKHYEAGQLGEEFGGKPELAADEYVQIKSQGDRLRVLRDKKC-- 1081 (1243)
T ss_pred hCHHHHHHHHcccc-cch----HHHHHHHHhhhhhHHHHhhhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHhhhhh--
Confidence 55555554432211 111 23444445555555567788899999999999999999999999999998876553
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000731 1108 LITKVKHASLECASSLIGEYKEGLEKVGKYLTRYLAVRQ 1146 (1325)
Q Consensus 1108 L~e~v~~~l~e~~~~~~e~l~~~~~~~~k~~~Rl~~vR~ 1146 (1325)
..|-.-+......+.+.|....+.+|..|+..+-+
T Consensus 1082 ----e~p~a~~~~~~e~~t~dDvs~a~~~~st~~s~~t~ 1116 (1243)
T COG5290 1082 ----EMPEAREILREELLTLDDVSEAFVKYSTRLSALTE 1116 (1243)
T ss_pred ----cChHHHHhhhhhhcCccchhhhhhhhhhHHHHHHH
Confidence 24555566666778889999999999999877753
No 252
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.64 E-value=1.1e-05 Score=94.38 Aligned_cols=325 Identities=14% Similarity=0.100 Sum_probs=186.8
Q ss_pred EEeCCCCeEE-EeceecCcEEEEEEcCCCCeEEEEeCCccEEEEe-ecCceeeeeeccccCCCceeccCccccCCCCeEE
Q 000731 101 LHSVDGNATE-VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMT-HDWDLLYENPLEELAEGFDVHEPELSSSFSFKSP 178 (1325)
Q Consensus 101 lw~~~~~~~e-~vg~~~~~I~~~awSPDG~~LA~~s~dgtV~l~s-~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~ 178 (1325)
.|+..+.... .+++..=.+..++|||-|..|++.+..| |.+|. ..|+.+.... + ..+..
T Consensus 16 f~~~~s~~~~~~~~~~~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~l~~~~-~-----------------~~V~~ 76 (561)
T COG5354 16 FWNSQSEVIHTRFESENWPVAYVSESPLGTYLFSEHAAG-VECWGGPSKAKLVRFR-H-----------------PDVKY 76 (561)
T ss_pred eecCccccccccccccCcchhheeecCcchheehhhccc-eEEccccchhheeeee-c-----------------CCcee
Confidence 3666554333 5565455689999999999999998874 77875 4455333222 1 24578
Q ss_pred EEEecCCcEEEEeecc---ccc----c-CCCCEEEEEECCCCceeeeecCCCCc--ee-EEEEccCCCeEEEEecCCCCC
Q 000731 179 ISWRGDGKYFATLSEF---CNS----S-KLHKRLKVWERDSGTLQASSELKAFM--GA-VLEWMPSGANIAAVYDRKSEN 247 (1325)
Q Consensus 179 isWspDG~~lAtvss~---d~~----~-~~d~~irVWd~~~G~l~~t~e~~~~~--v~-~lawsPdG~~IAs~~~d~~~~ 247 (1325)
+.|||.|+||.|=+.. +++ + +.+..+.|||..+|.+..++...... .+ -+-||-|-++.|=..
T Consensus 77 ~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv------ 150 (561)
T COG5354 77 LDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVV------ 150 (561)
T ss_pred cccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhc------
Confidence 9999999999843321 011 0 12346999999999999988765443 45 788999999887553
Q ss_pred CCCeEEEEeCCCce-EEEE-EeccCCCCcEEEEEEccC--CCeeEEEEccCCC--CeEEEEEeeCCeeEEEeEEEEecCC
Q 000731 248 KCPSIVFYERNGLE-RSSF-DINEQIDSTVELLKWNCM--SDLLAAVVRFEEY--DSVKICFFSNNHWYLKYEIRYLRRD 321 (1325)
Q Consensus 248 ~~~~V~~~e~nGl~-~~~f-~l~~~~~~~V~~laWSpD--g~~LAs~~~d~~~--~~VqLW~~~n~~wylkqel~~~~~~ 321 (1325)
.+.+.+++..+.. ...| .++ ...|...+|||- +..||.+.-...+ ..+++|.+.-..-...+.+ -.-+
T Consensus 151 -~~sl~i~e~t~n~~~~p~~~lr---~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~l--fk~~ 224 (561)
T COG5354 151 -GSSLYIHEITDNIEEHPFKNLR---PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNL--FKVS 224 (561)
T ss_pred -cCeEEEEecCCccccCchhhcc---ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeee--Eeec
Confidence 2468889853211 1112 111 246889999996 4568887654322 2899999873321111111 1123
Q ss_pred cEEEEEccCCCcEEEEEec---CCc-E------E------------------EEEEEEeeeeCCCeeEEEEeCCEEEEee
Q 000731 322 GIRFMWHPTKPLQLICWTL---DGQ-I------T------------------TYNFIWTTAVMENSTALVIDGSKILVTP 373 (1325)
Q Consensus 322 ~~~v~Wsp~~~~~L~~~~~---~g~-~------~------------------~~~~~~~~~~~d~~~v~viDG~~l~lt~ 373 (1325)
...+.|++.+...|...-. ++. + . +.+|.|....+..+++...-...+.+++
T Consensus 225 ~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~ 304 (561)
T COG5354 225 GVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFD 304 (561)
T ss_pred ccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceeccccccceeeeecccCCceeEEecccccceeecc
Confidence 4678899888754333211 110 1 0 1344554332222222212233344455
Q ss_pred cCCcCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECC---CcEEEEeCCCCCccccccCCceeEeeeccccccCcE
Q 000731 374 LSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSD---GCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSV 450 (1325)
Q Consensus 374 l~~~~vPpPm~~~~l~~~~~V~~VaFSpdg~~~~LAs~s~D---gti~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v 450 (1325)
+++.++ ....+..=+.+.|||.+ +.+..++-| |.+.+|+..+. |.+...+ .....
T Consensus 305 lr~Nl~-------~~~Pe~~rNT~~fsp~~--r~il~agF~nl~gni~i~~~~~r----------f~~~~~~---~~~n~ 362 (561)
T COG5354 305 LRGNLR-------FYFPEQKRNTIFFSPHE--RYILFAGFDNLQGNIEIFDPAGR----------FKVAGAF---NGLNT 362 (561)
T ss_pred cccceE-------EecCCcccccccccCcc--cEEEEecCCccccceEEeccCCc----------eEEEEEe---ecCCc
Confidence 544321 01112233567899998 777665554 68888887652 2222111 00123
Q ss_pred EEEEEecCCeEEEEEecCCC----CceEEEEe
Q 000731 451 IHLIWLGSHLLLSVSHHGPR----HSNYFRGA 478 (1325)
Q Consensus 451 ~~l~~~~d~~lla~~~~~~~----~~~~~~~~ 478 (1325)
.-.-|+||++++-++..+.- +.+.+|.+
T Consensus 363 s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v 394 (561)
T COG5354 363 SYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDV 394 (561)
T ss_pred eEeeccCCceEEEecCCCcccccCcceEEEEe
Confidence 34469999999877654221 56777776
No 253
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.64 E-value=6.3e-05 Score=87.24 Aligned_cols=177 Identities=15% Similarity=0.136 Sum_probs=127.7
Q ss_pred CCCEEEEEECCCcEEEEeCCCCeEEEeceecCcEEEEEEcCCCCeEEEEeCCc-cEEEEeecCceeeeeeccccCCCcee
Q 000731 86 EKEALIVGTSSGLLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFG-QILVMTHDWDLLYENPLEELAEGFDV 164 (1325)
Q Consensus 86 dg~~La~as~dG~I~lw~~~~~~~e~vg~~~~~I~~~awSPDG~~LA~~s~dg-tV~l~s~~~d~~~e~~l~~~~~~~~V 164 (1325)
+|+.++.+| -|...+.+...+-.-.+|+ .++|.-..++-|++-++.++.|| .+-+.+.+.-.+..+.
T Consensus 331 ~Gd~ia~VS-RGkaFi~~~~~~~~iqv~~-~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e---------- 398 (668)
T COG4946 331 NGDYIALVS-RGKAFIMRPWDGYSIQVGK-KGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIE---------- 398 (668)
T ss_pred CCcEEEEEe-cCcEEEECCCCCeeEEcCC-CCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEee----------
Confidence 688999887 5778888877665555675 88899999999999999999998 6777665432221111
Q ss_pred ccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeecCCCCceeEEEEccCCCeEEEEecCC
Q 000731 165 HEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRK 244 (1325)
Q Consensus 165 s~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~~~v~~lawsPdG~~IAs~~~d~ 244 (1325)
+.-+.|.++.-+|||++++ ++- .+..+-+.|.++|...-.-....+++..++|+|++++||-+=-.
T Consensus 399 ------~~lg~I~av~vs~dGK~~v-vaN------dr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~- 464 (668)
T COG4946 399 ------KDLGNIEAVKVSPDGKKVV-VAN------DRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPE- 464 (668)
T ss_pred ------CCccceEEEEEcCCCcEEE-EEc------CceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCc-
Confidence 1114678999999999988 662 24567777888998877766778999999999999999976221
Q ss_pred CCCCCCeEEEEeCCCceEEEEEeccCCCCcEEEEEEccCCCeeEEEEc
Q 000731 245 SENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVR 292 (1325)
Q Consensus 245 ~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~ 292 (1325)
+--.+.|++++..|..+-..+.+ .+.=.+-||.|||+.|---+.
T Consensus 465 -gy~tq~Iklydm~~~Kiy~vTT~---ta~DfsPaFD~d~ryLYfLs~ 508 (668)
T COG4946 465 -GYYTQSIKLYDMDGGKIYDVTTP---TAYDFSPAFDPDGRYLYFLSA 508 (668)
T ss_pred -ceeeeeEEEEecCCCeEEEecCC---cccccCcccCCCCcEEEEEec
Confidence 01135699999887666544333 223346789999998766543
No 254
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.63 E-value=2.9e-06 Score=107.45 Aligned_cols=217 Identities=11% Similarity=0.039 Sum_probs=130.7
Q ss_pred CCEEEEEEccCC-CEEEEEECCCcEEEEeCCC-----C--eEEE-eceecCcEEEEEEcCCCCeEEEEeCCccEEEEeec
Q 000731 76 DSITAFDYLMEK-EALIVGTSSGLLLLHSVDG-----N--ATEV-VGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHD 146 (1325)
Q Consensus 76 ~~V~~v~~spdg-~~La~as~dG~I~lw~~~~-----~--~~e~-vg~~~~~I~~~awSPDG~~LA~~s~dgtV~l~s~~ 146 (1325)
..|..++-+++. ..+++||.||+|++||... + +.+. ..-..+.+.++..=+.|+.+|.++.||.|.++.-+
T Consensus 1049 ~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id 1128 (1431)
T KOG1240|consen 1049 SAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRID 1128 (1431)
T ss_pred ccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEcc
Confidence 455666666554 9999999999999999742 1 1221 11134678888899999999999999999887543
Q ss_pred Ccee----eeeeccccC--CCceec---------------cC-------------------ccccCCCCeEEEEEecCCc
Q 000731 147 WDLL----YENPLEELA--EGFDVH---------------EP-------------------ELSSSFSFKSPISWRGDGK 186 (1325)
Q Consensus 147 ~d~~----~e~~l~~~~--~~~~Vs---------------~t-------------------qf~~~~~~i~~isWspDG~ 186 (1325)
-... .++....+. ++.-|+ .| ++....+.+++++-+|-|.
T Consensus 1129 ~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~ 1208 (1431)
T KOG1240|consen 1129 HYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCN 1208 (1431)
T ss_pred ccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCce
Confidence 2100 011111111 222121 11 1223457799999999999
Q ss_pred EEEEeeccccccCCCCEEEEEECCCCceeeeec-CCCCceeEEEEccC---CCeEEEEecCCCCCCCCeEEEEeC-CCce
Q 000731 187 YFATLSEFCNSSKLHKRLKVWERDSGTLQASSE-LKAFMGAVLEWMPS---GANIAAVYDRKSENKCPSIVFYER-NGLE 261 (1325)
Q Consensus 187 ~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e-~~~~~v~~lawsPd---G~~IAs~~~d~~~~~~~~V~~~e~-nGl~ 261 (1325)
+++ +|+ ..|.+-+||.+-+.+....+ |+..++..+.-.|- ...+.+++... .+.|..|+. +|.+
T Consensus 1209 Wlv-iGt------s~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~----~nevs~wn~~~g~~ 1277 (1431)
T KOG1240|consen 1209 WLV-IGT------SRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSS----NNEVSTWNMETGLR 1277 (1431)
T ss_pred EEE-Eec------CCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccC----CCceeeeecccCcc
Confidence 999 774 35889999987787777644 45556666666553 34555555422 467888984 6655
Q ss_pred EEEEEec-----------c-----CCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeC
Q 000731 262 RSSFDIN-----------E-----QIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSN 306 (1325)
Q Consensus 262 ~~~f~l~-----------~-----~~~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~n 306 (1325)
+..|-.. . ++.......++..-+..+.+++.|. .|+.||..+
T Consensus 1278 ~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~---kIR~wD~~~ 1335 (1431)
T KOG1240|consen 1278 QTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDM---KIRKWDPTR 1335 (1431)
T ss_pred eEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCcc---ceeeccCCC
Confidence 4433221 0 1111122233333344555555555 688888654
No 255
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=98.62 E-value=1.3e-05 Score=86.20 Aligned_cols=202 Identities=12% Similarity=0.087 Sum_probs=127.7
Q ss_pred EEEEEEccCCCEEEEEECCCcEEEEeCCC---------CeEEEe--ceecCcEEEEEEcCCCCeEEEEeCCccEEEEeec
Q 000731 78 ITAFDYLMEKEALIVGTSSGLLLLHSVDG---------NATEVV--GRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHD 146 (1325)
Q Consensus 78 V~~v~~spdg~~La~as~dG~I~lw~~~~---------~~~e~v--g~~~~~I~~~awSPDG~~LA~~s~dgtV~l~s~~ 146 (1325)
|.+=+|+|-+++|+.|+.+|+|.+.+++. ++..++ ..|++.|..++|- | ..|. .++||.|+-|-
T Consensus 13 vf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~-d-~~Ll-s~gdG~V~gw~-- 87 (325)
T KOG0649|consen 13 VFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH-D-DFLL-SGGDGLVYGWE-- 87 (325)
T ss_pred HHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee-h-hhee-eccCceEEEee--
Confidence 55567899999999999999999998753 233332 4679999999998 3 3444 45669998763
Q ss_pred Cceeee-eeccccC---CCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeecCCC
Q 000731 147 WDLLYE-NPLEELA---EGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKA 222 (1325)
Q Consensus 147 ~d~~~e-~~l~~~~---~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~ 222 (1325)
|.-..+ ....... ...++.. ..=..|..+.--|...-+. .+ ++|+.+.-||.++|+...++.+|.
T Consensus 88 W~E~~es~~~K~lwe~~~P~~~~~----~evPeINam~ldP~enSi~-~A------gGD~~~y~~dlE~G~i~r~~rGHt 156 (325)
T KOG0649|consen 88 WNEEEESLATKRLWEVKIPMQVDA----VEVPEINAMWLDPSENSIL-FA------GGDGVIYQVDLEDGRIQREYRGHT 156 (325)
T ss_pred ehhhhhhccchhhhhhcCccccCc----ccCCccceeEeccCCCcEE-Ee------cCCeEEEEEEecCCEEEEEEcCCc
Confidence 322221 1111100 0000100 0002356666666544333 22 357999999999999999999999
Q ss_pred CceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeCCCceEEEEEec--------cCC-CCcEEEEEEccCCCeeEEEEcc
Q 000731 223 FMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDIN--------EQI-DSTVELLKWNCMSDLLAAVVRF 293 (1325)
Q Consensus 223 ~~v~~lawsPdG~~IAs~~~d~~~~~~~~V~~~e~nGl~~~~f~l~--------~~~-~~~V~~laWSpDg~~LAs~~~d 293 (1325)
..++++.-+.....|.||+.| ++|++|+.....|-. .+. .|+ ..+|.+|+ -|.+.|..|...
T Consensus 157 DYvH~vv~R~~~~qilsG~ED------GtvRvWd~kt~k~v~-~ie~yk~~~~lRp~~g~wigala--~~edWlvCGgGp 227 (325)
T KOG0649|consen 157 DYVHSVVGRNANGQILSGAED------GTVRVWDTKTQKHVS-MIEPYKNPNLLRPDWGKWIGALA--VNEDWLVCGGGP 227 (325)
T ss_pred ceeeeeeecccCcceeecCCC------ccEEEEeccccceeE-EeccccChhhcCcccCceeEEEe--ccCceEEecCCC
Confidence 999999996666678888875 579999943223322 111 111 23456655 345567776555
Q ss_pred CCCCeEEEEEeeCCe
Q 000731 294 EEYDSVKICFFSNNH 308 (1325)
Q Consensus 294 ~~~~~VqLW~~~n~~ 308 (1325)
. +-||++....
T Consensus 228 ~----lslwhLrsse 238 (325)
T KOG0649|consen 228 K----LSLWHLRSSE 238 (325)
T ss_pred c----eeEEeccCCC
Confidence 4 8899876543
No 256
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.62 E-value=0.0022 Score=79.90 Aligned_cols=98 Identities=10% Similarity=0.055 Sum_probs=59.9
Q ss_pred EEEEeecCCc-CCCCCceeeee---cC-----CCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccccccCCceeE
Q 000731 368 KILVTPLSLS-LMPPPMYLFSL---KF-----PTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVV 438 (1325)
Q Consensus 368 ~l~lt~l~~~-~vPpPm~~~~l---~~-----~~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~~~~~~~~~~~~g~~~~~ 438 (1325)
.+++|++... ..-||.|.+++ ++ +.++.+++.|.+- +.+|+|-.||.|.++.-+-.... |..+.
T Consensus 93 llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l--~~Iv~Gf~nG~V~~~~GDi~RDr----gsr~~- 165 (933)
T KOG2114|consen 93 LLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDL--KTIVCGFTNGLVICYKGDILRDR----GSRQD- 165 (933)
T ss_pred EEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccc--cEEEEEecCcEEEEEcCcchhcc----cccee-
Confidence 4677777543 22337776332 22 4567889999997 89999999999999976531111 11111
Q ss_pred eeeccccccCcEEEEEEecCCeE-EEEEecCCCCceEEEEe
Q 000731 439 EACISETAFGSVIHLIWLGSHLL-LSVSHHGPRHSNYFRGA 478 (1325)
Q Consensus 439 ~~~~~~~~~~~v~~l~~~~d~~l-la~~~~~~~~~~~~~~~ 478 (1325)
.. ......|+.+++..|++. |.++. .+++.++.+
T Consensus 166 -~~--~~~~~pITgL~~~~d~~s~lFv~T---t~~V~~y~l 200 (933)
T KOG2114|consen 166 -YS--HRGKEPITGLALRSDGKSVLFVAT---TEQVMLYSL 200 (933)
T ss_pred -ee--ccCCCCceeeEEecCCceeEEEEe---cceeEEEEe
Confidence 01 112347999999999876 22222 246666666
No 257
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=98.61 E-value=4.4e-07 Score=106.84 Aligned_cols=186 Identities=18% Similarity=0.242 Sum_probs=136.3
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEE
Q 000731 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1325)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~V~~v~~spdg~~La~as~dG~I~l 101 (1325)
..-.++++.-+.-||++.....+|..++ .++.. |..+.. ..+.+++|...+.-..||+|+.+|.|-.
T Consensus 135 ~GRDm~y~~~scDly~~gsg~evYRlNL--EqGrf----------L~P~~~-~~~~lN~v~in~~hgLla~Gt~~g~VEf 201 (703)
T KOG2321|consen 135 FGRDMKYHKPSCDLYLVGSGSEVYRLNL--EQGRF----------LNPFET-DSGELNVVSINEEHGLLACGTEDGVVEF 201 (703)
T ss_pred CCccccccCCCccEEEeecCcceEEEEc--ccccc----------cccccc-ccccceeeeecCccceEEecccCceEEE
Confidence 4567888888888999877667999999 56653 221111 1468999999999999999999999999
Q ss_pred EeCCCC----eEEE---eceecCc-----EEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeeeccccCCCceeccCcc
Q 000731 102 HSVDGN----ATEV---VGRVEGG-----VRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPEL 169 (1325)
Q Consensus 102 w~~~~~----~~e~---vg~~~~~-----I~~~awSPDG~~LA~~s~dgtV~l~s~~~d~~~e~~l~~~~~~~~Vs~tqf 169 (1325)
||..+. .++. |.++.++ |++++|+-||=.+|+|+.+|.|.+.+ .-+..++-..+|+
T Consensus 202 wDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyD----LRa~~pl~~kdh~-------- 269 (703)
T KOG2321|consen 202 WDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYD----LRASKPLLVKDHG-------- 269 (703)
T ss_pred ecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEE----cccCCceeecccC--------
Confidence 999763 3332 3334444 99999999999999999999998864 3333333222211
Q ss_pred ccCCCCeEEEEEecC--CcEEEEeeccccccCCCCEEEEEECCCCceeeeecCCCCceeEEEEccCCCeEEEEecC
Q 000731 170 SSSFSFKSPISWRGD--GKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDR 243 (1325)
Q Consensus 170 ~~~~~~i~~isWspD--G~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~~~v~~lawsPdG~~IAs~~~d 243 (1325)
..-.|..+.|-+. +..++ + .| .+.+||||..+|+.....|+... +..+++=|++-++-++...
T Consensus 270 --~e~pi~~l~~~~~~~q~~v~--S-~D-----k~~~kiWd~~~Gk~~asiEpt~~-lND~C~~p~sGm~f~Ane~ 334 (703)
T KOG2321|consen 270 --YELPIKKLDWQDTDQQNKVV--S-MD-----KRILKIWDECTGKPMASIEPTSD-LNDFCFVPGSGMFFTANES 334 (703)
T ss_pred --CccceeeecccccCCCceEE--e-cc-----hHHhhhcccccCCceeeccccCC-cCceeeecCCceEEEecCC
Confidence 1235788999554 44555 2 22 37999999999999999887766 6899999999888877653
No 258
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.60 E-value=6e-05 Score=85.02 Aligned_cols=219 Identities=18% Similarity=0.204 Sum_probs=136.4
Q ss_pred eEEeeecCCCEEEEEeC-CCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEc-cCCCEEEEEECCCcEEE
Q 000731 24 QFSALDIEQNRLFFASS-ANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYL-MEKEALIVGTSSGLLLL 101 (1325)
Q Consensus 24 ~~~~~d~~~~~l~~~s~-~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~V~~v~~s-pdg~~La~as~dG~I~l 101 (1325)
.+.+||++++.||++.- .+.|+.|++ .++.. .+ +.. ....++.+. ++ ..|.++..+| +.+
T Consensus 3 Egp~~d~~~g~l~~~D~~~~~i~~~~~--~~~~~--~~---------~~~---~~~~G~~~~~~~-g~l~v~~~~~-~~~ 64 (246)
T PF08450_consen 3 EGPVWDPRDGRLYWVDIPGGRIYRVDP--DTGEV--EV---------IDL---PGPNGMAFDRPD-GRLYVADSGG-IAV 64 (246)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEET--TTTEE--EE---------EES---SSEEEEEEECTT-SEEEEEETTC-EEE
T ss_pred cceEEECCCCEEEEEEcCCCEEEEEEC--CCCeE--EE---------Eec---CCCceEEEEccC-CEEEEEEcCc-eEE
Confidence 57899999999999975 668999999 45442 11 111 238889998 66 4555555544 556
Q ss_pred EeCCCCeEEEece------ecCcEEEEEEcCCCCeEEEEeCC--------ccEEEEeecCceeeeeeccccCCCceeccC
Q 000731 102 HSVDGNATEVVGR------VEGGVRFISPSPDGDLLGVTTGF--------GQILVMTHDWDLLYENPLEELAEGFDVHEP 167 (1325)
Q Consensus 102 w~~~~~~~e~vg~------~~~~I~~~awSPDG~~LA~~s~d--------gtV~l~s~~~d~~~e~~l~~~~~~~~Vs~t 167 (1325)
+|..+++++.+-. .....+.++++|||.+.++.... |.|..++.+... . ......
T Consensus 65 ~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~~~~-~-~~~~~~--------- 133 (246)
T PF08450_consen 65 VDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPDGKV-T-VVADGL--------- 133 (246)
T ss_dssp EETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETTSEE-E-EEEEEE---------
T ss_pred EecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCCCeE-E-EEecCc---------
Confidence 6988887652221 23458899999999988777654 335444333111 1 111100
Q ss_pred ccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECC-CCc-eee-----eecCCCCceeEEEEccCCCeEEEE
Q 000731 168 ELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERD-SGT-LQA-----SSELKAFMGAVLEWMPSGANIAAV 240 (1325)
Q Consensus 168 qf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~-~G~-l~~-----t~e~~~~~v~~lawsPdG~~IAs~ 240 (1325)
.....|+|+|||+.|. ++. ...+.|..++.. ++. +.. ......+....+++.++|++.++.
T Consensus 134 ------~~pNGi~~s~dg~~ly-v~d-----s~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~ 201 (246)
T PF08450_consen 134 ------GFPNGIAFSPDGKTLY-VAD-----SFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVAD 201 (246)
T ss_dssp ------SSEEEEEEETTSSEEE-EEE-----TTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEE
T ss_pred ------ccccceEECCcchhee-ecc-----cccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEE
Confidence 1347899999999765 332 234678777763 232 221 122222345789999999977664
Q ss_pred ecCCCCCCCCeEEEEeCCCceEEEEEeccCCCCcEEEEEE-ccCCCeeEEEEc
Q 000731 241 YDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKW-NCMSDLLAAVVR 292 (1325)
Q Consensus 241 ~~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laW-SpDg~~LAs~~~ 292 (1325)
-. .+.|..++.+|.......++. ..+.+++| .||.+.|-+.+.
T Consensus 202 ~~------~~~I~~~~p~G~~~~~i~~p~---~~~t~~~fgg~~~~~L~vTta 245 (246)
T PF08450_consen 202 WG------GGRIVVFDPDGKLLREIELPV---PRPTNCAFGGPDGKTLYVTTA 245 (246)
T ss_dssp ET------TTEEEEEETTSCEEEEEE-SS---SSEEEEEEESTTSSEEEEEEB
T ss_pred cC------CCEEEEECCCccEEEEEcCCC---CCEEEEEEECCCCCEEEEEeC
Confidence 43 367999999998877666542 36899999 588888776653
No 259
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.57 E-value=7.2e-06 Score=97.84 Aligned_cols=131 Identities=15% Similarity=0.161 Sum_probs=106.6
Q ss_pred CCCEEEEEECCCcEEEEeCCCCeEE---EeceecCcEEEEEEcCCCCeEEEEeCCccEEEEee-cCceeeeeeccccCCC
Q 000731 86 EKEALIVGTSSGLLLLHSVDGNATE---VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTH-DWDLLYENPLEELAEG 161 (1325)
Q Consensus 86 dg~~La~as~dG~I~lw~~~~~~~e---~vg~~~~~I~~~awSPDG~~LA~~s~dgtV~l~s~-~~d~~~e~~l~~~~~~ 161 (1325)
|...|+.|+..|.|.+|+..++++. ..|.|+++|+++.|+.+-..|=++++|..+..|+- +...+..
T Consensus 69 ~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~--------- 139 (541)
T KOG4547|consen 69 DTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRI--------- 139 (541)
T ss_pred CceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeee---------
Confidence 4568899999999999999988774 44788999999999999999999999999988752 2111111
Q ss_pred ceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeecCCCCceeEEEEccC-----CCe
Q 000731 162 FDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPS-----GAN 236 (1325)
Q Consensus 162 ~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~~~v~~lawsPd-----G~~ 236 (1325)
|+.....+.+++.+|||+.++ +++ ++|++||.++++...++++|.+++.+++|--+ |.+
T Consensus 140 -------~~~~~~~~~sl~is~D~~~l~-~as--------~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~ 203 (541)
T KOG4547|consen 140 -------WKEQKPLVSSLCISPDGKILL-TAS--------RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKY 203 (541)
T ss_pred -------eccCCCccceEEEcCCCCEEE-ecc--------ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccce
Confidence 112223568899999999999 664 89999999999999999999999999999888 777
Q ss_pred EEEEe
Q 000731 237 IAAVY 241 (1325)
Q Consensus 237 IAs~~ 241 (1325)
+.++.
T Consensus 204 vLssa 208 (541)
T KOG4547|consen 204 VLSSA 208 (541)
T ss_pred eeecc
Confidence 65553
No 260
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=98.56 E-value=9.8e-07 Score=110.55 Aligned_cols=196 Identities=16% Similarity=0.160 Sum_probs=148.9
Q ss_pred CCEEEEEEccCCCEEEEEECCCcEEEEeCCCCeE-EEeceecC----cEEEEEEcCCCCeEEEEeCCccEEEEeecCcee
Q 000731 76 DSITAFDYLMEKEALIVGTSSGLLLLHSVDGNAT-EVVGRVEG----GVRFISPSPDGDLLGVTTGFGQILVMTHDWDLL 150 (1325)
Q Consensus 76 ~~V~~v~~spdg~~La~as~dG~I~lw~~~~~~~-e~vg~~~~----~I~~~awSPDG~~LA~~s~dgtV~l~s~~~d~~ 150 (1325)
+.|..-.++-+...+++++.+..+.+|+...+.+ ...++-+. ...-+-+|++.=++++++--+.|++|....+
T Consensus 88 ~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~d-- 165 (967)
T KOG0974|consen 88 DWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHED-- 165 (967)
T ss_pred ccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEecccc--
Confidence 5666667777888999999999999999876432 11221111 1223456888889999999999999743211
Q ss_pred eeeeccccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceee-eecCCCCceeEEE
Q 000731 151 YENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQA-SSELKAFMGAVLE 229 (1325)
Q Consensus 151 ~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~-t~e~~~~~v~~la 229 (1325)
. +++ ...+|.+.+.++.||-||.++|++| .||++|+|+.++++... +.=+|...++.+.
T Consensus 166 -n---------~p~---~l~GHeG~iF~i~~s~dg~~i~s~S-------dDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~ 225 (967)
T KOG0974|consen 166 -N---------KPI---RLKGHEGSIFSIVTSLDGRYIASVS-------DDRSIRLWPIDSREVLGCTGFGHSARVWACC 225 (967)
T ss_pred -C---------Ccc---eecccCCceEEEEEccCCcEEEEEe-------cCcceeeeecccccccCcccccccceeEEEE
Confidence 1 111 1237889999999999999999654 37999999998888776 5667999999999
Q ss_pred EccCCCeEEEEecCCCCCCCCeEEEEeCCCceEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeC
Q 000731 230 WMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSN 306 (1325)
Q Consensus 230 wsPdG~~IAs~~~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~n 306 (1325)
|.|+ .|++++.| -+.++|.-||.....| .++....++.++-.++.-++.+++.|+ ++++|+..+
T Consensus 226 ~~~n--~i~t~ged------ctcrvW~~~~~~l~~y--~~h~g~~iw~~~~~~~~~~~vT~g~Ds---~lk~~~l~~ 289 (967)
T KOG0974|consen 226 FLPN--RIITVGED------CTCRVWGVNGTQLEVY--DEHSGKGIWKIAVPIGVIIKVTGGNDS---TLKLWDLNG 289 (967)
T ss_pred eccc--eeEEeccc------eEEEEEecccceehhh--hhhhhcceeEEEEcCCceEEEeeccCc---chhhhhhhc
Confidence 9999 89999986 5688999898765533 333345699999999999999999999 899999764
No 261
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=98.53 E-value=5.5e-05 Score=81.46 Aligned_cols=256 Identities=14% Similarity=0.149 Sum_probs=151.3
Q ss_pred eeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCC-CCCEEEEEEccCCCEEEEEECCCcEEE
Q 000731 23 LQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEP-GDSITAFDYLMEKEALIVGTSSGLLLL 101 (1325)
Q Consensus 23 ~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~V~~v~~spdg~~La~as~dG~I~l 101 (1325)
+-.-+|.+-...++.++.++.|....+++.-....-.-.+ +.-.++.. .+.|.+++|. ...|.+++ ||.|+=
T Consensus 13 vf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk----~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~g 85 (325)
T KOG0649|consen 13 VFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGK----LKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYG 85 (325)
T ss_pred HHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCC----cceeeccccCCCeeeeeee--hhheeecc-CceEEE
Confidence 3344566667778888888888877774211110000001 11111111 4689999998 34566654 699998
Q ss_pred EeCCC-------Ce-EE-----Eeceec-CcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeeeccccCCCceeccC
Q 000731 102 HSVDG-------NA-TE-----VVGRVE-GGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEP 167 (1325)
Q Consensus 102 w~~~~-------~~-~e-----~vg~~~-~~I~~~awSPDG~~LA~~s~dgtV~l~s~~~d~~~e~~l~~~~~~~~Vs~t 167 (1325)
|.-+. ++ ++ .++..+ ..|++|..-|....|.++++|+.+.-|+-. .+..- -
T Consensus 86 w~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE----~G~i~-----------r 150 (325)
T KOG0649|consen 86 WEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLE----DGRIQ-----------R 150 (325)
T ss_pred eeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEec----CCEEE-----------E
Confidence 75432 11 11 222222 359999999999999999999999776532 21111 1
Q ss_pred ccccCCCCeEEEEE-ecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeecCCCC----------ceeEEEEccCCCe
Q 000731 168 ELSSSFSFKSPISW-RGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAF----------MGAVLEWMPSGAN 236 (1325)
Q Consensus 168 qf~~~~~~i~~isW-spDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~~----------~v~~lawsPdG~~ 236 (1325)
.|++|.+.+.++.= +..|+.|. + .+|+++||||..+++..++.++... ++.+++ -+..+
T Consensus 151 ~~rGHtDYvH~vv~R~~~~qils--G------~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala--~~edW 220 (325)
T KOG0649|consen 151 EYRGHTDYVHSVVGRNANGQILS--G------AEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALA--VNEDW 220 (325)
T ss_pred EEcCCcceeeeeeecccCcceee--c------CCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEe--ccCce
Confidence 24577888888887 45666553 4 3579999999999999998775432 233333 23346
Q ss_pred EEEEecCCCCCCCCeEEEEeC-CCceEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeEEEeEE
Q 000731 237 IAAVYDRKSENKCPSIVFYER-NGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEI 315 (1325)
Q Consensus 237 IAs~~~d~~~~~~~~V~~~e~-nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~n~~wylkqel 315 (1325)
+.+|+. ..+.+|.. .-.....|.++ ..|..+.|-.| .+|+.| ... .|+-|+.+. .++..+
T Consensus 221 lvCGgG-------p~lslwhLrsse~t~vfpip----a~v~~v~F~~d-~vl~~G-~g~---~v~~~~l~G---vl~a~i 281 (325)
T KOG0649|consen 221 LVCGGG-------PKLSLWHLRSSESTCVFPIP----ARVHLVDFVDD-CVLIGG-EGN---HVQSYTLNG---VLQANI 281 (325)
T ss_pred EEecCC-------CceeEEeccCCCceEEEecc----cceeEeeeecc-eEEEec-ccc---ceeeeeecc---EEEEec
Confidence 666654 45788973 22233344443 34777877544 344443 222 699999876 344445
Q ss_pred EEecCCcEEEEEcc
Q 000731 316 RYLRRDGIRFMWHP 329 (1325)
Q Consensus 316 ~~~~~~~~~v~Wsp 329 (1325)
.+....-.+..|+.
T Consensus 282 p~~s~~c~s~s~~~ 295 (325)
T KOG0649|consen 282 PVESTACYSASWQT 295 (325)
T ss_pred cCCccceeeecccC
Confidence 44322225566664
No 262
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.53 E-value=2.2e-06 Score=95.87 Aligned_cols=213 Identities=16% Similarity=0.110 Sum_probs=131.2
Q ss_pred CCCEEEEEEccCCCEEEEEECCCcEEEEeCCC---CeEE---Eece------------ecCcEEEEEEcCCCCe--EEEE
Q 000731 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDG---NATE---VVGR------------VEGGVRFISPSPDGDL--LGVT 134 (1325)
Q Consensus 75 ~~~V~~v~~spdg~~La~as~dG~I~lw~~~~---~~~e---~vg~------------~~~~I~~~awSPDG~~--LA~~ 134 (1325)
.+-|.+|.|.-+|+.||+|-.+|.|.++..+. ++.. .... ++..|+.++|-++|+. ..+.
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 35689999999999999999999999987542 1111 1111 2456999999998764 5667
Q ss_pred eCCccEEEEeecCceee--eeeccccCCCceec---cC----------------ccccCCCCeEEEEEecCCcEEEEeec
Q 000731 135 TGFGQILVMTHDWDLLY--ENPLEELAEGFDVH---EP----------------ELSSSFSFKSPISWRGDGKYFATLSE 193 (1325)
Q Consensus 135 s~dgtV~l~s~~~d~~~--e~~l~~~~~~~~Vs---~t----------------qf~~~~~~i~~isWspDG~~lAtvss 193 (1325)
+.|.||++|...-.-.. +..+........++ .. --++|+-.+.+|+.+.|+++|. ++
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~l-SA- 182 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFL-SA- 182 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEe-ec-
Confidence 89999999942100000 00000000111111 00 0116778899999999999998 43
Q ss_pred cccccCCCCEEEEEECCC-Cceeee--ecCC-----CCceeEEEEccCCC-eEEEEecCCCCCCCCeEEEEeCC--C--c
Q 000731 194 FCNSSKLHKRLKVWERDS-GTLQAS--SELK-----AFMGAVLEWMPSGA-NIAAVYDRKSENKCPSIVFYERN--G--L 260 (1325)
Q Consensus 194 ~d~~~~~d~~irVWd~~~-G~l~~t--~e~~-----~~~v~~lawsPdG~-~IAs~~~d~~~~~~~~V~~~e~n--G--l 260 (1325)
.|=.|-+|+.+- .+.-.+ -.|+ ...+++--|+|.-. +++-++. +++|++.|.- - .
T Consensus 183 ------DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSS------KGtIrLcDmR~~aLCd 250 (433)
T KOG1354|consen 183 ------DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSS------KGTIRLCDMRQSALCD 250 (433)
T ss_pred ------cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecC------CCcEEEeechhhhhhc
Confidence 246899999841 111111 1121 22357778999754 4444443 4789999832 1 1
Q ss_pred eEE-EEEeccCC---------CCcEEEEEEccCCCeeEEEEccCCCCeEEEEEee
Q 000731 261 ERS-SFDINEQI---------DSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFS 305 (1325)
Q Consensus 261 ~~~-~f~l~~~~---------~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~ 305 (1325)
.|. .|..+... -..|.++.||++|+++.+...- +|+|||.+
T Consensus 251 ~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDyl----tvk~wD~n 301 (433)
T KOG1354|consen 251 AHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYL----TVKLWDLN 301 (433)
T ss_pred chhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEeccc----eeEEEecc
Confidence 222 23333211 1358899999999999997665 69999984
No 263
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.52 E-value=6.2e-05 Score=89.78 Aligned_cols=193 Identities=12% Similarity=0.121 Sum_probs=102.0
Q ss_pred ccCCCEEEEE---------ECCCcEEEEeCCCCeEEEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeee
Q 000731 84 LMEKEALIVG---------TSSGLLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENP 154 (1325)
Q Consensus 84 spdg~~La~a---------s~dG~I~lw~~~~~~~e~vg~~~~~I~~~awSPDG~~LA~~s~dgtV~l~s~~~d~~~e~~ 154 (1325)
|||++.++++ +..+++.+||+.++++..+......+..+.|||||+.||.+.+ +.|.+++.... .+..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP~g~~~~~v~~-~nly~~~~~~~--~~~~ 77 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPPPPKLQDAKWSPDGKYIAFVRD-NNLYLRDLATG--QETQ 77 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-EETTBSEEEE-SSSTEEEEEET-TEEEEESSTTS--EEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCCccccccceeecCCCeeEEEec-CceEEEECCCC--CeEE
Confidence 6888888774 3457899999999888755544567899999999999999976 46777643222 2233
Q ss_pred ccccCCCceec---------cCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEEC---CCCceeeeecCCC
Q 000731 155 LEELAEGFDVH---------EPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWER---DSGTLQASSELKA 222 (1325)
Q Consensus 155 l~~~~~~~~Vs---------~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~---~~G~l~~t~e~~~ 222 (1325)
+..+. ...+. |..| +.-..+-|||||++||+ ...| ++.|+.+.. ..+.- .-
T Consensus 78 lT~dg-~~~i~nG~~dwvyeEEv~----~~~~~~~WSpd~~~la~-~~~d-----~~~v~~~~~~~~~~~~~------~y 140 (353)
T PF00930_consen 78 LTTDG-EPGIYNGVPDWVYEEEVF----DRRSAVWWSPDSKYLAF-LRFD-----EREVPEYPLPDYSPPDS------QY 140 (353)
T ss_dssp SES---TTTEEESB--HHHHHHTS----SSSBSEEE-TTSSEEEE-EEEE------TTS-EEEEEEESSSTE------SS
T ss_pred ecccc-ceeEEcCccceecccccc----ccccceEECCCCCEEEE-EEEC-----CcCCceEEeeccCCccc------cC
Confidence 33222 11110 1112 22367999999999994 4443 233433322 01100 00
Q ss_pred CceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeCCCceEEEEEec---cCCCCcEEEEEEccCCCeeEEEEccCCCC--
Q 000731 223 FMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDIN---EQIDSTVELLKWNCMSDLLAAVVRFEEYD-- 297 (1325)
Q Consensus 223 ~~v~~lawsPdG~~IAs~~~d~~~~~~~~V~~~e~nGl~~~~f~l~---~~~~~~V~~laWSpDg~~LAs~~~d~~~~-- 297 (1325)
..+..+.+---|.-.+ ...+.+++..+....+..++ ...+.-+..+.|++|++.|++...++..+
T Consensus 141 p~~~~~~YPk~G~~np----------~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~ 210 (353)
T PF00930_consen 141 PEVESIRYPKAGDPNP----------RVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRL 210 (353)
T ss_dssp -EEEEEE--BTTS-------------EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEE
T ss_pred CcccccccCCCCCcCC----------ceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEE
Confidence 0122333322233221 12355577655444344433 22345689999999999555555554444
Q ss_pred eEEEEEeeC
Q 000731 298 SVKICFFSN 306 (1325)
Q Consensus 298 ~VqLW~~~n 306 (1325)
.+.+++..+
T Consensus 211 ~l~~~d~~t 219 (353)
T PF00930_consen 211 DLVLCDAST 219 (353)
T ss_dssp EEEEEEECT
T ss_pred EEEEEECCC
Confidence 455556544
No 264
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.51 E-value=5.5e-07 Score=103.86 Aligned_cols=196 Identities=15% Similarity=0.013 Sum_probs=151.0
Q ss_pred CCEEEEEEccCCCEEEEEECCCcEEEEeCCCCeEEEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeeec
Q 000731 76 DSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPL 155 (1325)
Q Consensus 76 ~~V~~v~~spdg~~La~as~dG~I~lw~~~~~~~e~vg~~~~~I~~~awSPDG~~LA~~s~dgtV~l~s~~~d~~~e~~l 155 (1325)
-....+.|+.+|+.|++|+..|.|..+|..++.+.+--.+...|..+.|=...+++|++-.. -+.+++..+.-+..+.-
T Consensus 130 FGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~-y~yvYD~~GtElHClk~ 208 (545)
T KOG1272|consen 130 FGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQKK-YVYVYDNNGTELHCLKR 208 (545)
T ss_pred cCCeeeeecCCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhhc-eEEEecCCCcEEeehhh
Confidence 36789999999999999999999999999887765333445679999999999999988654 56777665544433221
Q ss_pred cccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeecCCCCceeEEEEccCCC
Q 000731 156 EELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGA 235 (1325)
Q Consensus 156 ~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~~~v~~lawsPdG~ 235 (1325)
+ ..+..+-|-|---+|| .++ ..+-++--|..+|++.+......|.+..++=+|-..
T Consensus 209 ~-----------------~~v~rLeFLPyHfLL~-~~~------~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~Na 264 (545)
T KOG1272|consen 209 H-----------------IRVARLEFLPYHFLLV-AAS------EAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNA 264 (545)
T ss_pred c-----------------Cchhhhcccchhheee-ecc------cCCceEEEeechhhhhHHHHccCCccchhhcCCccc
Confidence 1 3567788888777777 332 246788889989999998877788888899999988
Q ss_pred eEEEEecCCCCCCCCeEEEEeCCCceEEEEEec-cCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCe
Q 000731 236 NIAAVYDRKSENKCPSIVFYERNGLERSSFDIN-EQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNH 308 (1325)
Q Consensus 236 ~IAs~~~d~~~~~~~~V~~~e~nGl~~~~f~l~-~~~~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~n~~ 308 (1325)
.|-.|.. .++|.+|..|-. +.-.. .-+.+.|.+|++.++|.++|+++.|. .++|||+.++.
T Consensus 265 Vih~Ghs------nGtVSlWSP~sk---ePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr---~~kIWDlR~~~ 326 (545)
T KOG1272|consen 265 VIHLGHS------NGTVSLWSPNSK---EPLVKILCHRGPVSSIAVDRGGRYMATTGLDR---KVKIWDLRNFY 326 (545)
T ss_pred eEEEcCC------CceEEecCCCCc---chHHHHHhcCCCcceEEECCCCcEEeeccccc---ceeEeeecccc
Confidence 8887765 478999998742 11111 22457899999999999999999999 89999999863
No 265
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=98.51 E-value=5.2e-07 Score=109.76 Aligned_cols=266 Identities=12% Similarity=0.125 Sum_probs=169.6
Q ss_pred EeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeeeccccCCCceeccCccccCCCCeEEEEEecCCcEEEE
Q 000731 111 VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFAT 190 (1325)
Q Consensus 111 ~vg~~~~~I~~~awSPDG~~LA~~s~dgtV~l~s~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAt 190 (1325)
+.| |-..|.|+.|.--|..+.+++.|.-|+||+.. ++.++.... ||.+.+..++-+....++|
T Consensus 186 Llg-H~naVyca~fDrtg~~Iitgsdd~lvKiwS~e----t~~~lAs~r-----------Ghs~ditdlavs~~n~~ia- 248 (1113)
T KOG0644|consen 186 LLG-HRNAVYCAIFDRTGRYIITGSDDRLVKIWSME----TARCLASCR-----------GHSGDITDLAVSSNNTMIA- 248 (1113)
T ss_pred HHh-hhhheeeeeeccccceEeecCccceeeeeecc----chhhhccCC-----------CCccccchhccchhhhhhh-
Confidence 455 46889999999999999999999999998732 333443332 6777788888888888888
Q ss_pred eeccccccCCCCEEEEEECCCCceeeeecCCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeCCCceEEEEEec--
Q 000731 191 LSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDIN-- 268 (1325)
Q Consensus 191 vss~d~~~~~d~~irVWd~~~G~l~~t~e~~~~~v~~lawsPdG~~IAs~~~d~~~~~~~~V~~~e~nGl~~~~f~l~-- 268 (1325)
.+| .|..||||-..+|.+++.+.+|.|.|++|+|+|-- ++++| +++++|+.. +....|.-+
T Consensus 249 aaS------~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~----sss~d------gt~~~wd~r-~~~~~y~prp~ 311 (1113)
T KOG0644|consen 249 AAS------NDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDD------GTCRIWDAR-LEPRIYVPRPL 311 (1113)
T ss_pred hcc------cCceEEEEecCCCchHHHHhccccceeeeccCccc----cCCCC------CceEecccc-ccccccCCCCC
Confidence 554 35899999999999999999999999999999965 55554 579999854 222222111
Q ss_pred -cCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeEEEeEEEEecC-------------CcEEEEEccCCCcE
Q 000731 269 -EQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRR-------------DGIRFMWHPTKPLQ 334 (1325)
Q Consensus 269 -~~~~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~n~~wylkqel~~~~~-------------~~~~v~Wsp~~~~~ 334 (1325)
......+-++.|-..|.-.++++.|+ .-+.|...-..|--. -+.|... ......|.--.+..
T Consensus 312 ~~~~~~~~~s~~~~~~~~~f~Tgs~d~---ea~n~e~~~l~~~~~-~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l 387 (1113)
T KOG0644|consen 312 KFTEKDLVDSILFENNGDRFLTGSRDG---EARNHEFEQLAWRSN-LLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQL 387 (1113)
T ss_pred CcccccceeeeeccccccccccccCCc---ccccchhhHhhhhcc-ceEEEeccccccccceeeeeeeEeeeeecccchh
Confidence 11124577888888888888988887 555555443222100 0111110 01223343322222
Q ss_pred EEEEecCCcEEEEEEEEeeeeCCCe--eEEEEeCCEEEEeecCCcCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEE
Q 000731 335 LICWTLDGQITTYNFIWTTAVMENS--TALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAIL 412 (1325)
Q Consensus 335 L~~~~~~g~~~~~~~~~~~~~~d~~--~v~viDG~~l~lt~l~~~~vPpPm~~~~l~~~~~V~~VaFSpdg~~~~LAs~s 412 (1325)
+|+.. | +..+.++-++.|.+.. +-+--||+++ +|+.-.. .||-.+.+.| ..+.+-.||+|| +.++...
T Consensus 388 ~H~l~--g-hsd~~yvLd~Hpfn~ri~msag~dgst~-iwdi~eg---~pik~y~~gh-~kl~d~kFSqdg--ts~~lsd 457 (1113)
T KOG0644|consen 388 LHNLM--G-HSDEVYVLDVHPFNPRIAMSAGYDGSTI-IWDIWEG---IPIKHYFIGH-GKLVDGKFSQDG--TSIALSD 457 (1113)
T ss_pred hhhhc--c-cccceeeeeecCCCcHhhhhccCCCceE-eeecccC---Ccceeeeccc-ceeeccccCCCC--ceEecCC
Confidence 22222 1 1112334444433322 2334567654 5665432 3666666664 445677899999 8888887
Q ss_pred CCCcEEEEeCCC
Q 000731 413 SDGCLCVVDLPA 424 (1325)
Q Consensus 413 ~Dgti~lw~~~~ 424 (1325)
.-|.+.|.....
T Consensus 458 ~hgql~i~g~gq 469 (1113)
T KOG0644|consen 458 DHGQLYILGTGQ 469 (1113)
T ss_pred CCCceEEeccCC
Confidence 888888877643
No 266
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.50 E-value=0.0002 Score=84.27 Aligned_cols=277 Identities=12% Similarity=0.082 Sum_probs=145.1
Q ss_pred CcEEEEeCCCCeEE---EeceecCcEEEEEEcCCCCeEEEEeC----------CccEEEEe-ecCceeeeeeccccCCCc
Q 000731 97 GLLLLHSVDGNATE---VVGRVEGGVRFISPSPDGDLLGVTTG----------FGQILVMT-HDWDLLYENPLEELAEGF 162 (1325)
Q Consensus 97 G~I~lw~~~~~~~e---~vg~~~~~I~~~awSPDG~~LA~~s~----------dgtV~l~s-~~~d~~~e~~l~~~~~~~ 162 (1325)
|+|.+.|.++.++. -+|.-.. .+ +||||+.|.++.. ++.|.+|+ ....++.++.+...++.+
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~---~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~ 102 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPN---PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFL 102 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCc---ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhh
Confidence 78999999886542 2332122 23 9999999998866 67888886 566777777765442100
Q ss_pred eeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeecCCCCceeEEEE--------ccCC
Q 000731 163 DVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEW--------MPSG 234 (1325)
Q Consensus 163 ~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~~~v~~law--------sPdG 234 (1325)
+ ......++.+|||+++. ++..+ .+..|-|.|..+++.+..-.-.+ ...-..+ ++||
T Consensus 103 -~--------~~~~~~~~ls~dgk~l~-V~n~~----p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~t~e~~~~~~~~Dg 167 (352)
T TIGR02658 103 -V--------GTYPWMTSLTPDNKTLL-FYQFS----PSPAVGVVDLEGKAFVRMMDVPD-CYHIFPTANDTFFMHCRDG 167 (352)
T ss_pred -c--------cCccceEEECCCCCEEE-EecCC----CCCEEEEEECCCCcEEEEEeCCC-CcEEEEecCCccEEEeecC
Confidence 0 01235789999999888 66443 25899999998998887654322 2223333 3444
Q ss_pred CeEEEEecCCCCCCCCeEEEEeCCCceEEEEEeccCCCCcEEEEEEcc-CCCeeEEEEccCCCCeEEEEEeeCCeeEEEe
Q 000731 235 ANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNC-MSDLLAAVVRFEEYDSVKICFFSNNHWYLKY 313 (1325)
Q Consensus 235 ~~IAs~~~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSp-Dg~~LAs~~~d~~~~~VqLW~~~n~~wylkq 313 (1325)
.++-.+.++.+......+.+|+.+- .+. .... .+++ ||+.+-+... + +|.+-|.++..--...
T Consensus 168 ~~~~v~~d~~g~~~~~~~~vf~~~~-------~~v-~~rP----~~~~~dg~~~~vs~e-G---~V~~id~~~~~~~~~~ 231 (352)
T TIGR02658 168 SLAKVGYGTKGNPKIKPTEVFHPED-------EYL-INHP----AYSNKSGRLVWPTYT-G---KIFQIDLSSGDAKFLP 231 (352)
T ss_pred ceEEEEecCCCceEEeeeeeecCCc-------ccc-ccCC----ceEcCCCcEEEEecC-C---eEEEEecCCCcceecc
Confidence 4443332221100000111111000 000 0111 3455 8888877766 5 7888885432110011
Q ss_pred EEEEecCCcEEEEEccCCCcEEEEEecCCcEEEE-E---EEEeeeeCCCeeEEEEeCCEEEEeecCCcCCCCCceeeeec
Q 000731 314 EIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTY-N---FIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLK 389 (1325)
Q Consensus 314 el~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~-~---~~~~~~~~d~~~v~viDG~~l~lt~l~~~~vPpPm~~~~l~ 389 (1325)
.+.........=.|.|.+.+. ...+.+|..... . -.|+ ...+...++++|..+-++ ...+.
T Consensus 232 ~~~~~~~~~~~~~wrP~g~q~-ia~~~dg~~lyV~~~~~~~~t-hk~~~~~V~ViD~~t~kv-------------i~~i~ 296 (352)
T TIGR02658 232 AIEAFTEAEKADGWRPGGWQQ-VAYHRARDRIYLLADQRAKWT-HKTASRFLFVVDAKTGKR-------------LRKIE 296 (352)
T ss_pred eeeeccccccccccCCCccee-EEEcCCCCEEEEEecCCcccc-ccCCCCEEEEEECCCCeE-------------EEEEe
Confidence 111100000001244444322 222222221100 0 0011 012234677777654322 23445
Q ss_pred CCCCEEEEEEecCCCCC-EEEEEE-CCCcEEEEeCCCC
Q 000731 390 FPTAVTEMAFYSKSSKN-CLAAIL-SDGCLCVVDLPAP 425 (1325)
Q Consensus 390 ~~~~V~~VaFSpdg~~~-~LAs~s-~Dgti~lw~~~~~ 425 (1325)
....++.|+||||| + .|.+.. .++.|.+.|..+.
T Consensus 297 vG~~~~~iavS~Dg--kp~lyvtn~~s~~VsViD~~t~ 332 (352)
T TIGR02658 297 LGHEIDSINVSQDA--KPLLYALSTGDKTLYIFDAETG 332 (352)
T ss_pred CCCceeeEEECCCC--CeEEEEeCCCCCcEEEEECcCC
Confidence 56688999999999 6 666655 5789999998764
No 267
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.49 E-value=6e-05 Score=83.67 Aligned_cols=145 Identities=16% Similarity=0.162 Sum_probs=79.6
Q ss_pred EEEcCCCCeEEEEeCCccEEEEe--ecCceeeeeeccccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccC
Q 000731 122 ISPSPDGDLLGVTTGFGQILVMT--HDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSK 199 (1325)
Q Consensus 122 ~awSPDG~~LA~~s~dgtV~l~s--~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~ 199 (1325)
++-++||++||+..+ ..|.+=+ .+|..+.+.+-.+.+ . ..|| ..++|||||.+|| .+.
T Consensus 3 ~~~~~~Gk~lAi~qd-~~iEiRsa~Ddf~si~~kcqVpkD-~----~PQW-------Rkl~WSpD~tlLa-~a~------ 62 (282)
T PF15492_consen 3 LALSSDGKLLAILQD-QCIEIRSAKDDFSSIIGKCQVPKD-P----NPQW-------RKLAWSPDCTLLA-YAE------ 62 (282)
T ss_pred eeecCCCcEEEEEec-cEEEEEeccCCchheeEEEecCCC-C----Cchh-------eEEEECCCCcEEE-EEc------
Confidence 567899999998755 4565533 234444333322222 0 1122 6899999999999 653
Q ss_pred CCCEEEEEECCCCceeeeecCCC-------CceeEEEEccCC-------CeEEEEecCCCCCCCCeEEEEe------CCC
Q 000731 200 LHKRLKVWERDSGTLQASSELKA-------FMGAVLEWMPSG-------ANIAAVYDRKSENKCPSIVFYE------RNG 259 (1325)
Q Consensus 200 ~d~~irVWd~~~G~l~~t~e~~~-------~~v~~lawsPdG-------~~IAs~~~d~~~~~~~~V~~~e------~nG 259 (1325)
..++|+|+|. .|..+.+..+.. ..+..+.|-+-- .+|+..-+ +.++=|- .+.
T Consensus 63 S~G~i~vfdl-~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~-------G~L~Sy~vs~gt~q~y 134 (282)
T PF15492_consen 63 STGTIRVFDL-MGSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYR-------GQLRSYLVSVGTNQGY 134 (282)
T ss_pred CCCeEEEEec-ccceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEecc-------ceeeeEEEEcccCCcc
Confidence 3589999999 776666544322 112333333221 11221110 1111110 111
Q ss_pred ceEEEEEeccCCCCcEEEEEEccCCCeeEEEEccC
Q 000731 260 LERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFE 294 (1325)
Q Consensus 260 l~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~ 294 (1325)
.....|.+..+....|.++.|.|..++|.+++...
T Consensus 135 ~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~ 169 (282)
T PF15492_consen 135 QENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQ 169 (282)
T ss_pred eeeEEEEecccCCCceeEEEEcCCCCEEEEeccCC
Confidence 12223444333345799999999999998887544
No 268
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.47 E-value=4.9e-06 Score=100.73 Aligned_cols=193 Identities=13% Similarity=0.055 Sum_probs=120.3
Q ss_pred CCEEEEEEccCCCEEEEE---ECC-CcEEEEeCCCCeEEEeceecCcEEEEEEcCCCCeEEEEe-CCccEEEEeecCcee
Q 000731 76 DSITAFDYLMEKEALIVG---TSS-GLLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTT-GFGQILVMTHDWDLL 150 (1325)
Q Consensus 76 ~~V~~v~~spdg~~La~a---s~d-G~I~lw~~~~~~~e~vg~~~~~I~~~awSPDG~~LA~~s-~dgtV~l~s~~~d~~ 150 (1325)
..+..=.|+|+++.++-. ... ..|.++++++++-+.+....+.-...+|||||+.||.++ .||..-||.-+.+..
T Consensus 193 ~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~ 272 (425)
T COG0823 193 SLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGK 272 (425)
T ss_pred cceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCC
Confidence 457778899999987643 222 358999999887766665566667889999999999986 466665554332222
Q ss_pred eeeeccccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeecCCCCceeEEEE
Q 000731 151 YENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEW 230 (1325)
Q Consensus 151 ~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~~~v~~law 230 (1325)
....+.... + .-..-+|+|||+++++++.. .+.-.|-+.|++.+..........+. ..-.|
T Consensus 273 ~~~~Lt~~~-----------g---i~~~Ps~spdG~~ivf~Sdr----~G~p~I~~~~~~g~~~~riT~~~~~~-~~p~~ 333 (425)
T COG0823 273 NLPRLTNGF-----------G---INTSPSWSPDGSKIVFTSDR----GGRPQIYLYDLEGSQVTRLTFSGGGN-SNPVW 333 (425)
T ss_pred cceecccCC-----------c---cccCccCCCCCCEEEEEeCC----CCCcceEEECCCCCceeEeeccCCCC-cCccC
Confidence 211121111 1 12378999999999977643 23346778888544443333322222 36789
Q ss_pred ccCCCeEEEEecCCCCCCCCeEEEEeCCCce-EEEEEeccCCCCcEEEEEEccCCCeeEEEEccC
Q 000731 231 MPSGANIAAVYDRKSENKCPSIVFYERNGLE-RSSFDINEQIDSTVELLKWNCMSDLLAAVVRFE 294 (1325)
Q Consensus 231 sPdG~~IAs~~~d~~~~~~~~V~~~e~nGl~-~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~ 294 (1325)
||||++||..+...+ ...|...+.+.-. .. .+. .......-.|+|||+.+...+...
T Consensus 334 SpdG~~i~~~~~~~g---~~~i~~~~~~~~~~~~--~lt--~~~~~e~ps~~~ng~~i~~~s~~~ 391 (425)
T COG0823 334 SPDGDKIVFESSSGG---QWDIDKNDLASGGKIR--ILT--STYLNESPSWAPNGRMIMFSSGQG 391 (425)
T ss_pred CCCCCEEEEEeccCC---ceeeEEeccCCCCcEE--Ecc--ccccCCCCCcCCCCceEEEeccCC
Confidence 999999999885422 2556667653211 11 111 122344678999999887766543
No 269
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.42 E-value=6.1e-05 Score=88.99 Aligned_cols=231 Identities=17% Similarity=0.228 Sum_probs=139.7
Q ss_pred CCEEEEEEccCCCEEEEEE-----------CCCcEEEEeCCCCeEE-Eeceec--CcEE-EEEEcCCCCeEEEEeCCccE
Q 000731 76 DSITAFDYLMEKEALIVGT-----------SSGLLLLHSVDGNATE-VVGRVE--GGVR-FISPSPDGDLLGVTTGFGQI 140 (1325)
Q Consensus 76 ~~V~~v~~spdg~~La~as-----------~dG~I~lw~~~~~~~e-~vg~~~--~~I~-~~awSPDG~~LA~~s~dgtV 140 (1325)
..|.-+.|||.-++|++=+ +...++|||+.+|.+. .+..+. ..++ -..||.|++++|-.++++ |
T Consensus 250 p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~s-i 328 (698)
T KOG2314|consen 250 PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNS-I 328 (698)
T ss_pred CCceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccce-E
Confidence 4789999999999998754 2356899999988653 221111 2233 579999999999999974 5
Q ss_pred EEE-eecCceeeeeeccccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccc-cCCCCEEEEEECCCCceeeee
Q 000731 141 LVM-THDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNS-SKLHKRLKVWERDSGTLQASS 218 (1325)
Q Consensus 141 ~l~-s~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~-~~~d~~irVWd~~~G~l~~t~ 218 (1325)
.+. +..+.++-..++.. ++|...+|+|-++.||. +.++ .....++-+-..-+++.+.+-
T Consensus 329 sIyEtpsf~lld~Kslki----------------~gIr~FswsP~~~llAY---wtpe~~~~parvtL~evPs~~~iRt~ 389 (698)
T KOG2314|consen 329 SIYETPSFMLLDKKSLKI----------------SGIRDFSWSPTSNLLAY---WTPETNNIPARVTLMEVPSKREIRTK 389 (698)
T ss_pred EEEecCceeeecccccCC----------------ccccCcccCCCcceEEE---EcccccCCcceEEEEecCccceeeec
Confidence 443 33344433333322 46788999999999883 2222 011234555554455544442
Q ss_pred cCCCCceeEEEEccCCCeEEEEecCCCCCC-CC---eEEEEeCCCceEEEEEec---cCCCCcEEEEEEccCCCeeEEEE
Q 000731 219 ELKAFMGAVLEWMPSGANIAAVYDRKSENK-CP---SIVFYERNGLERSSFDIN---EQIDSTVELLKWNCMSDLLAAVV 291 (1325)
Q Consensus 219 e~~~~~v~~lawsPdG~~IAs~~~d~~~~~-~~---~V~~~e~nGl~~~~f~l~---~~~~~~V~~laWSpDg~~LAs~~ 291 (1325)
.-+.=.-..+-|..+|.+|+.--+..+... ++ .+-+|... .. .++ .+....|...+|-|.|...|+-+
T Consensus 390 nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrir---eK--dIpve~velke~vi~FaWEP~gdkF~vi~ 464 (698)
T KOG2314|consen 390 NLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIR---EK--DIPVEVVELKESVIAFAWEPHGDKFAVIS 464 (698)
T ss_pred cceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEee---cc--CCCceeeecchheeeeeeccCCCeEEEEE
Confidence 222212256889999999987654322111 11 12222210 00 111 11234689999999999999988
Q ss_pred ccCCCCeEEEEEee-C-CeeEEEeEEEEecCCcEEEEEccCCCc
Q 000731 292 RFEEYDSVKICFFS-N-NHWYLKYEIRYLRRDGIRFMWHPTKPL 333 (1325)
Q Consensus 292 ~d~~~~~VqLW~~~-n-~~wylkqel~~~~~~~~~v~Wsp~~~~ 333 (1325)
......+|+++... | ..|-|..++ .......+.|+|.|..
T Consensus 465 g~~~k~tvsfY~~e~~~~~~~lVk~~--dk~~~N~vfwsPkG~f 506 (698)
T KOG2314|consen 465 GNTVKNTVSFYAVETNIKKPSLVKEL--DKKFANTVFWSPKGRF 506 (698)
T ss_pred ccccccceeEEEeecCCCchhhhhhh--cccccceEEEcCCCcE
Confidence 77666689999887 3 333332322 2222378999999875
No 270
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.40 E-value=9.7e-05 Score=86.86 Aligned_cols=347 Identities=12% Similarity=0.128 Sum_probs=193.1
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCC----
Q 000731 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSG---- 97 (1325)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~V~~v~~spdg~~La~as~dG---- 97 (1325)
.....++.+-|--|+.....+ |..|.-. .+.. +..+ +...|..+.|||.+++|.+=+.-+
T Consensus 34 p~~~~~~SP~G~~l~~~~~~~-V~~~~g~--~~~~----------l~~~---~~~~V~~~~fSP~~kYL~tw~~~pi~~p 97 (561)
T COG5354 34 PVAYVSESPLGTYLFSEHAAG-VECWGGP--SKAK----------LVRF---RHPDVKYLDFSPNEKYLVTWSREPIIEP 97 (561)
T ss_pred chhheeecCcchheehhhccc-eEEcccc--chhh----------eeee---ecCCceecccCcccceeeeeccCCccCh
Confidence 455667777776666555555 8888762 2221 2222 135789999999999998754333
Q ss_pred -----------cEEEEeCCCCeEE-EeceecCc--EE-EEEEcCCCCeEEEEeCCccEEEEeecCceeeeeeccccCCCc
Q 000731 98 -----------LLLLHSVDGNATE-VVGRVEGG--VR-FISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGF 162 (1325)
Q Consensus 98 -----------~I~lw~~~~~~~e-~vg~~~~~--I~-~~awSPDG~~LA~~s~dgtV~l~s~~~d~~~e~~l~~~~~~~ 162 (1325)
.+.+||..++.+- ........ .+ -+.||-|..++|-..++ .+.+... .+-+.+.+.+..
T Consensus 98 e~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~-sl~i~e~-t~n~~~~p~~~l---- 171 (561)
T COG5354 98 EIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGS-SLYIHEI-TDNIEEHPFKNL---- 171 (561)
T ss_pred hhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhccC-eEEEEec-CCccccCchhhc----
Confidence 3889999887653 11112233 45 78999999999888665 3544321 111111111111
Q ss_pred eeccCccccCCCCeEEEEEecCCc--EEEEeeccccc-cCCCCEEEEEECCCCceeee--ecCCCCceeEEEEccCCCeE
Q 000731 163 DVHEPELSSSFSFKSPISWRGDGK--YFATLSEFCNS-SKLHKRLKVWERDSGTLQAS--SELKAFMGAVLEWMPSGANI 237 (1325)
Q Consensus 163 ~Vs~tqf~~~~~~i~~isWspDG~--~lAtvss~d~~-~~~d~~irVWd~~~G~l~~t--~e~~~~~v~~lawsPdG~~I 237 (1325)
...++...+|+|-|. -||+ .-++ .+..++++||..-.+..+.+ +-..++ -.+-|.+.|+.|
T Consensus 172 ---------r~~gi~dFsisP~~n~~~la~---~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~--~qLkW~~~g~~l 237 (561)
T COG5354 172 ---------RPVGILDFSISPEGNHDELAY---WTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSG--VQLKWQVLGKYL 237 (561)
T ss_pred ---------cccceeeEEecCCCCCceEEE---EccccCCCCcEEEEEEccCCCeeeeeeeEeecc--cEEEEecCCceE
Confidence 114678999999753 4552 2233 24568999999855555444 222222 578999999987
Q ss_pred EEEecCC--CCC---CCCeEEEEeCCCceEEEEEecc--CCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeE
Q 000731 238 AAVYDRK--SEN---KCPSIVFYERNGLERSSFDINE--QIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWY 310 (1325)
Q Consensus 238 As~~~d~--~~~---~~~~V~~~e~nGl~~~~f~l~~--~~~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~n~~wy 310 (1325)
.+--... ++. ....+-++... ++.++. ...+.|.+.+|+|+|+..|+.+.-.+ .++-+.++...-
T Consensus 238 l~l~~t~~ksnKsyfgesnLyl~~~~-----e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~p-a~~s~~~lr~Nl-- 309 (561)
T COG5354 238 LVLVMTHTKSNKSYFGESNLYLLRIT-----ERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMP-ASVSVFDLRGNL-- 309 (561)
T ss_pred EEEEEEeeecccceeccceEEEEeec-----ccccceeccccccceeeeecccCCceeEEecccc-cceeecccccce--
Confidence 5432210 000 01233334322 222331 12467999999999999998873221 156666665421
Q ss_pred EEeEEEEecCCcEEEEEccCCCcEEEEEe--cCCcEEEEEEEEeeeeCCCeeEE-EEeCCEEEEeecCCcCCCCCceeee
Q 000731 311 LKYEIRYLRRDGIRFMWHPTKPLQLICWT--LDGQITTYNFIWTTAVMENSTAL-VIDGSKILVTPLSLSLMPPPMYLFS 387 (1325)
Q Consensus 311 lkqel~~~~~~~~~v~Wsp~~~~~L~~~~--~~g~~~~~~~~~~~~~~d~~~v~-viDG~~l~lt~l~~~~vPpPm~~~~ 387 (1325)
...++++....+.|+|.+..-|..+- ..|.+ .+|+.. +.-.++ ..+|.
T Consensus 310 ---~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni----~i~~~~--~rf~~~~~~~~~-------------------- 360 (561)
T COG5354 310 ---RFYFPEQKRNTIFFSPHERYILFAGFDNLQGNI----EIFDPA--GRFKVAGAFNGL-------------------- 360 (561)
T ss_pred ---EEecCCcccccccccCcccEEEEecCCccccce----EEeccC--CceEEEEEeecC--------------------
Confidence 11222233367788887766443222 12222 233321 221111 22221
Q ss_pred ecCCCCEEEEEEecCCCCCEEEEE------ECCCcEEEEeCCCCCccccccCCceeEeeeccccccCcEEEEEEecCCeE
Q 000731 388 LKFPTAVTEMAFYSKSSKNCLAAI------LSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLL 461 (1325)
Q Consensus 388 l~~~~~V~~VaFSpdg~~~~LAs~------s~Dgti~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~l 461 (1325)
+-.-+.||||| +.+-+. -.|+.|+||+..+. . ...+.++.|-|.|++
T Consensus 361 -----n~s~~~wspd~--qF~~~~~ts~k~~~Dn~i~l~~v~g~-~-------------------~fel~~~~W~p~~~~ 413 (561)
T COG5354 361 -----NTSYCDWSPDG--QFYDTDTTSEKLRVDNSIKLWDVYGA-K-------------------VFELTNITWDPSGQY 413 (561)
T ss_pred -----CceEeeccCCc--eEEEecCCCcccccCcceEEEEecCc-h-------------------hhhhhhccccCCccc
Confidence 11234588888 555443 24789999998642 1 114667889888877
Q ss_pred EEEEecC
Q 000731 462 LSVSHHG 468 (1325)
Q Consensus 462 la~~~~~ 468 (1325)
.-+.+.+
T Consensus 414 ~ttsSs~ 420 (561)
T COG5354 414 VTTSSSC 420 (561)
T ss_pred ceeeccC
Confidence 6555443
No 271
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.39 E-value=1e-05 Score=101.07 Aligned_cols=244 Identities=14% Similarity=0.031 Sum_probs=154.8
Q ss_pred CCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEEEeCCCCeEE-
Q 000731 32 QNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATE- 110 (1325)
Q Consensus 32 ~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~V~~v~~spdg~~La~as~dG~I~lw~~~~~~~e- 110 (1325)
...+..+|+|+.|..|+.- ..+....++.+--.+|.+.-.-+.+.=.-++|-.....|.+++.-..|+|||....++.
T Consensus 1123 ~aLlLtas~dGvIRIwk~y-~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~ 1201 (1387)
T KOG1517|consen 1123 DALLLTASSDGVIRIWKDY-ADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVA 1201 (1387)
T ss_pred hhheeeeccCceEEEeccc-ccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEe
Confidence 3456778999999999872 23212122222112222211111112256789888888888877888999999875432
Q ss_pred -E-eceecCcEEEEEEcC-CCCeEEEEeCCccEEEEeecCceeeeeeccccCCCceeccCccccCCCC--eEEEEEecCC
Q 000731 111 -V-VGRVEGGVRFISPSP-DGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSF--KSPISWRGDG 185 (1325)
Q Consensus 111 -~-vg~~~~~I~~~awSP-DG~~LA~~s~dgtV~l~s~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~--i~~isWspDG 185 (1325)
+ .|. +..|++++=+- .|.++|.|-+||.|+++++--.+.. . .| ..++.|.+. |..+++.+.|
T Consensus 1202 diP~~s-~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~d-s---------~v--~~~R~h~~~~~Iv~~slq~~G 1268 (1387)
T KOG1517|consen 1202 DIPYGS-STLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPD-S---------LV--CVYREHNDVEPIVHLSLQRQG 1268 (1387)
T ss_pred ecccCC-CccceeecccccCCceEEEeecCCceEEeecccCCcc-c---------cc--eeecccCCcccceeEEeecCC
Confidence 2 232 55677665433 3699999999999998765322210 0 01 012234444 8889988766
Q ss_pred cE-EEEeeccccccCCCCEEEEEECCCCceeeeecCCC----C-ceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeCCC
Q 000731 186 KY-FATLSEFCNSSKLHKRLKVWERDSGTLQASSELKA----F-MGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNG 259 (1325)
Q Consensus 186 ~~-lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~----~-~v~~lawsPdG~~IAs~~~d~~~~~~~~V~~~e~nG 259 (1325)
-- ++ +++ .+|.|++||.+.......+.-.. | ..+++.-++.-..||+|+. ..|++|+..|
T Consensus 1269 ~~elv-Sgs------~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-------q~ikIy~~~G 1334 (1387)
T KOG1517|consen 1269 LGELV-SGS------QDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-------QLIKIYSLSG 1334 (1387)
T ss_pred Cccee-eec------cCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-------ceEEEEecCh
Confidence 43 44 343 35899999984322222222111 3 3689999999999999986 4699999888
Q ss_pred ceEEEEEec----cCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeC
Q 000731 260 LERSSFDIN----EQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSN 306 (1325)
Q Consensus 260 l~~~~f~l~----~~~~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~n 306 (1325)
...+.|.-. ++.-+.+.+|+|.|---+||+|+.|. +|-||...+
T Consensus 1335 ~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds---~V~iYs~~k 1382 (1387)
T KOG1517|consen 1335 EQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADS---TVSIYSCEK 1382 (1387)
T ss_pred hhhcccccCcccccCcCCCcceeeecchhHhhhhccCCc---eEEEeecCC
Confidence 766544322 12235689999999999999999888 999988765
No 272
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.39 E-value=4.5e-06 Score=93.38 Aligned_cols=297 Identities=12% Similarity=0.129 Sum_probs=154.2
Q ss_pred cCcEEEEEEcCCCCeEEEEeCCccEEEEeecCc------eeeeeeccccC-C-CceeccCccccCCCCeEEEEEecCCc-
Q 000731 116 EGGVRFISPSPDGDLLGVTTGFGQILVMTHDWD------LLYENPLEELA-E-GFDVHEPELSSSFSFKSPISWRGDGK- 186 (1325)
Q Consensus 116 ~~~I~~~awSPDG~~LA~~s~dgtV~l~s~~~d------~~~e~~l~~~~-~-~~~Vs~tqf~~~~~~i~~isWspDG~- 186 (1325)
.+-|.++.|..+|++||+|..+|.|.+..++-. ..++...|... + -+.+ .....|..|.|-++|.
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSl------eieEKinkIrw~~~~n~ 98 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSL------EIEEKINKIRWLDDGNL 98 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhh------hhhhhhhhceecCCCCc
Confidence 356899999999999999999999999865311 11111111111 0 0000 1124678999999886
Q ss_pred -EEEEeeccccccCCCCEEEEEECCCCceeeeecCCCCce-eEEEEccCCCeEEEEecCCCCCCCCeEEEEeCCCceEEE
Q 000731 187 -YFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMG-AVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSS 264 (1325)
Q Consensus 187 -~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~~~v-~~lawsPdG~~IAs~~~d~~~~~~~~V~~~e~nGl~~~~ 264 (1325)
.|. ++ +.+++||+|-..+-.... ++..-.. .....-++-++...+..+ ..| +.. -++.
T Consensus 99 a~FL-ls------tNdktiKlWKi~er~~k~--~~~~~~~~~~~~~~~~lr~p~~~~~~------~~v---ea~--prRv 158 (433)
T KOG1354|consen 99 AEFL-LS------TNDKTIKLWKIRERGSKK--EGYNLPEEGPPGTITSLRLPVEGRHD------LEV---EAS--PRRV 158 (433)
T ss_pred cEEE-Ee------cCCcceeeeeeecccccc--ccccccccCCCCccceeeceeecccc------cee---eee--eeee
Confidence 344 34 357999999763221111 1100000 000000000111111110 000 000 0011
Q ss_pred EEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeC-CeeEEEeEEE-EecC------Cc-EEEEEccCCCcEE
Q 000731 265 FDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSN-NHWYLKYEIR-YLRR------DG-IRFMWHPTKPLQL 335 (1325)
Q Consensus 265 f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~n-~~wylkqel~-~~~~------~~-~~v~Wsp~~~~~L 335 (1325)
| ...|+..|++|++|+|++.+.++..-+ |-||+..- .+-+ .|. .-+. .+ ++-.|||.....+
T Consensus 159 ~--aNaHtyhiNSIS~NsD~Et~lSADdLR----INLWnlei~d~sF---nIVDIKP~nmEeLteVITsaEFhp~~cn~f 229 (433)
T KOG1354|consen 159 Y--ANAHTYHINSISVNSDKETFLSADDLR----INLWNLEIIDQSF---NIVDIKPANMEELTEVITSAEFHPHHCNVF 229 (433)
T ss_pred c--cccceeEeeeeeecCccceEeecccee----eeeccccccCCce---eEEEccccCHHHHHHHHhhhccCHhHccEE
Confidence 1 112456799999999999999986665 99999762 1111 111 1111 23 6678999988877
Q ss_pred EEEecCCcEEEEEEEEeeeeCCCeeEEEEeCCEEEEeecCCcCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCC
Q 000731 336 ICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDG 415 (1325)
Q Consensus 336 ~~~~~~g~~~~~~~~~~~~~~d~~~v~viDG~~l~lt~l~~~~vPpPm~~~~l~~~~~V~~VaFSpdg~~~~LAs~s~Dg 415 (1325)
+..+..|++..++..-+ +..|... ++. ....-|.+.++++ +.-+.|.+|-||++| +++.+-.. -
T Consensus 230 ~YSSSKGtIrLcDmR~~---------aLCd~hs-Klf--Eepedp~~rsffs-eiIsSISDvKFs~sG--ryilsRDy-l 293 (433)
T KOG1354|consen 230 VYSSSKGTIRLCDMRQS---------ALCDAHS-KLF--EEPEDPSSRSFFS-EIISSISDVKFSHSG--RYILSRDY-L 293 (433)
T ss_pred EEecCCCcEEEeechhh---------hhhcchh-hhh--ccccCCcchhhHH-HHhhhhhceEEccCC--cEEEEecc-c
Confidence 77777788776554311 1112111 111 0001111122111 345678999999999 77765433 5
Q ss_pred cEEEEeCCCCCccccccCCceeEee------ecc---ccccCcEEEEEEecCCeEEEEEecC
Q 000731 416 CLCVVDLPAPDMLEDLEGTEFVVEA------CIS---ETAFGSVIHLIWLGSHLLLSVSHHG 468 (1325)
Q Consensus 416 ti~lw~~~~~~~~~~~~g~~~~~~~------~~~---~~~~~~v~~l~~~~d~~lla~~~~~ 468 (1325)
+|++||+.-...+ ...+++.. |.. ++-++. ...+|+.++..+++|++.
T Consensus 294 tvk~wD~nme~~p----v~t~~vh~~lr~kLc~lYEnD~IfdK-Fec~~sg~~~~v~TGsy~ 350 (433)
T KOG1354|consen 294 TVKLWDLNMEAKP----VETYPVHEYLRSKLCSLYENDAIFDK-FECSWSGNDSYVMTGSYN 350 (433)
T ss_pred eeEEEeccccCCc----ceEEeehHhHHHHHHHHhhccchhhe-eEEEEcCCcceEeccccc
Confidence 9999998531111 11122211 111 111222 356899999999988873
No 273
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.35 E-value=0.00025 Score=80.95 Aligned_cols=214 Identities=17% Similarity=0.111 Sum_probs=137.1
Q ss_pred CCEEEEEEcc-CCCEEEEEECCCcEEE-EeCCCCeEE-EeceecCcE--EEEEEcCCCCeEEEE-----eCCccEEEEee
Q 000731 76 DSITAFDYLM-EKEALIVGTSSGLLLL-HSVDGNATE-VVGRVEGGV--RFISPSPDGDLLGVT-----TGFGQILVMTH 145 (1325)
Q Consensus 76 ~~V~~v~~sp-dg~~La~as~dG~I~l-w~~~~~~~e-~vg~~~~~I--~~~awSPDG~~LA~~-----s~dgtV~l~s~ 145 (1325)
++.-+++.+| +.+.++++-.-|+..+ ||..+++.. .+-.-++.- =-..|||||++|-+. ++.|.|-||+.
T Consensus 5 ~RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~ 84 (305)
T PF07433_consen 5 ARGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDA 84 (305)
T ss_pred ccccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEEC
Confidence 3556788899 6788889999998654 898886543 222111111 135799999999876 45678888864
Q ss_pred c--CceeeeeeccccCCCceeccCccccCCCCeEEEEEecCCcEEEEee--cccccc-CCC---------CEEEEEECCC
Q 000731 146 D--WDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLS--EFCNSS-KLH---------KRLKVWERDS 211 (1325)
Q Consensus 146 ~--~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvs--s~d~~~-~~d---------~~irVWd~~~ 211 (1325)
. +..+.|.+.+.- +-..+.|.|||+.|+ |+ ++...+ .++ -.+-.-|..+
T Consensus 85 ~~~~~ri~E~~s~GI----------------GPHel~l~pDG~tLv-VANGGI~Thpd~GR~kLNl~tM~psL~~ld~~s 147 (305)
T PF07433_consen 85 ARGYRRIGEFPSHGI----------------GPHELLLMPDGETLV-VANGGIETHPDSGRAKLNLDTMQPSLVYLDARS 147 (305)
T ss_pred cCCcEEEeEecCCCc----------------ChhhEEEcCCCCEEE-EEcCCCccCcccCceecChhhcCCceEEEecCC
Confidence 3 444444443322 224588999998887 55 221110 111 1244457779
Q ss_pred Cceeeeec----CCCCceeEEEEccCCCeEEEEecCCCC-CCCCeEEEEeCCCceEEEEEecc----CCCCcEEEEEEcc
Q 000731 212 GTLQASSE----LKAFMGAVLEWMPSGANIAAVYDRKSE-NKCPSIVFYERNGLERSSFDINE----QIDSTVELLKWNC 282 (1325)
Q Consensus 212 G~l~~t~e----~~~~~v~~lawsPdG~~IAs~~~d~~~-~~~~~V~~~e~nGl~~~~f~l~~----~~~~~V~~laWSp 282 (1325)
|+++..-+ -+.-.+..|+|.++|..+...+..... ....-|.++.+.+.. ..+..+. ...+.|-+|++++
T Consensus 148 G~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~-~~~~~p~~~~~~l~~Y~gSIa~~~ 226 (305)
T PF07433_consen 148 GALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGAL-RLLPAPEEQWRRLNGYIGSIAADR 226 (305)
T ss_pred CceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcc-eeccCChHHHHhhCCceEEEEEeC
Confidence 99877632 244568999999999988777765431 223456677766532 2222221 1135699999999
Q ss_pred CCCeeEEEEccCCCCeEEEEEeeCCee
Q 000731 283 MSDLLAAVVRFEEYDSVKICFFSNNHW 309 (1325)
Q Consensus 283 Dg~~LAs~~~d~~~~~VqLW~~~n~~w 309 (1325)
||..+|+.+-.+ +.+.+||..+..|
T Consensus 227 ~g~~ia~tsPrG--g~~~~~d~~tg~~ 251 (305)
T PF07433_consen 227 DGRLIAVTSPRG--GRVAVWDAATGRL 251 (305)
T ss_pred CCCEEEEECCCC--CEEEEEECCCCCE
Confidence 999998887543 5899999988765
No 274
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.34 E-value=0.00025 Score=83.52 Aligned_cols=247 Identities=7% Similarity=-0.014 Sum_probs=137.8
Q ss_pred CEEEEEeCC-----CcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEEC----------CC
Q 000731 33 NRLFFASSA-----NNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTS----------SG 97 (1325)
Q Consensus 33 ~~l~~~s~~-----~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~V~~v~~spdg~~La~as~----------dG 97 (1325)
..+|+.... +.|+.+|. .+.+. +.+++.+ .....+ +||||+.|.++.. ++
T Consensus 13 ~~v~V~d~~~~~~~~~v~ViD~--~~~~v---~g~i~~G---------~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d 77 (352)
T TIGR02658 13 RRVYVLDPGHFAATTQVYTIDG--EAGRV---LGMTDGG---------FLPNPV-VASDGSFFAHASTVYSRIARGKRTD 77 (352)
T ss_pred CEEEEECCcccccCceEEEEEC--CCCEE---EEEEEcc---------CCCcee-ECCCCCEEEEEeccccccccCCCCC
Confidence 446655443 56888887 45553 3333433 233344 8999999988766 77
Q ss_pred cEEEEeCCCCeEE--E-ece-----ecCcEEEEEEcCCCCeEEEEe-C-CccEEEEe-ecCceeeeeeccccC------C
Q 000731 98 LLLLHSVDGNATE--V-VGR-----VEGGVRFISPSPDGDLLGVTT-G-FGQILVMT-HDWDLLYENPLEELA------E 160 (1325)
Q Consensus 98 ~I~lw~~~~~~~e--~-vg~-----~~~~I~~~awSPDG~~LA~~s-~-dgtV~l~s-~~~d~~~e~~l~~~~------~ 160 (1325)
.|.+||..+.+.. + +|. ....-...++||||++|.+.. . ++.|.+.+ .....+.++...... +
T Consensus 78 ~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e 157 (352)
T TIGR02658 78 YVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTAN 157 (352)
T ss_pred EEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecC
Confidence 8999999986542 1 111 011234789999999998876 3 67777765 345555555442211 0
Q ss_pred Ccee-----------c----------c-CccccCCCCeE-EEE-EecCCcEEEEeeccccccCCCCEEEEEEC-----CC
Q 000731 161 GFDV-----------H----------E-PELSSSFSFKS-PIS-WRGDGKYFATLSEFCNSSKLHKRLKVWER-----DS 211 (1325)
Q Consensus 161 ~~~V-----------s----------~-tqf~~~~~~i~-~is-WspDG~~lAtvss~d~~~~~d~~irVWd~-----~~ 211 (1325)
..+. + . .-|++.++.+. .-. +.+||+++- ++. .++|.+-|. ..
T Consensus 158 ~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~-vs~-------eG~V~~id~~~~~~~~ 229 (352)
T TIGR02658 158 DTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVW-PTY-------TGKIFQIDLSSGDAKF 229 (352)
T ss_pred CccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEE-Eec-------CCeEEEEecCCCccee
Confidence 0000 0 0 01111111000 002 333787665 543 278888884 12
Q ss_pred Cceeeeec---C----CCCceeEEEEccCCCeEEEEecCC----CCCCCCeEEEEeCC-CceEEEEEeccCCCCcEEEEE
Q 000731 212 GTLQASSE---L----KAFMGAVLEWMPSGANIAAVYDRK----SENKCPSIVFYERN-GLERSSFDINEQIDSTVELLK 279 (1325)
Q Consensus 212 G~l~~t~e---~----~~~~v~~lawsPdG~~IAs~~~d~----~~~~~~~V~~~e~n-Gl~~~~f~l~~~~~~~V~~la 279 (1325)
.+...+.. . ..+....++++|+|+.+-...... +......|.++|.. +..... ++. ...+..|+
T Consensus 230 ~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~--i~v--G~~~~~ia 305 (352)
T TIGR02658 230 LPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRK--IEL--GHEIDSIN 305 (352)
T ss_pred cceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEE--EeC--CCceeeEE
Confidence 22222211 1 122234599999999887643211 12234679889854 333332 221 34689999
Q ss_pred EccCCC-eeEEEEccCCCCeEEEEEeeCCe
Q 000731 280 WNCMSD-LLAAVVRFEEYDSVKICFFSNNH 308 (1325)
Q Consensus 280 WSpDg~-~LAs~~~d~~~~~VqLW~~~n~~ 308 (1325)
+||||+ .|.+..... +.|.+.|..+.+
T Consensus 306 vS~Dgkp~lyvtn~~s--~~VsViD~~t~k 333 (352)
T TIGR02658 306 VSQDAKPLLYALSTGD--KTLYIFDAETGK 333 (352)
T ss_pred ECCCCCeEEEEeCCCC--CcEEEEECcCCe
Confidence 999999 776665321 269999987753
No 275
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.33 E-value=7.2e-05 Score=100.47 Aligned_cols=214 Identities=14% Similarity=0.027 Sum_probs=127.4
Q ss_pred ceeEEeeecCCCEEEEEeC-CCcEEEEecccccccccceeecccc-ccccccCC--------CCCCEEEEEEcc-CCCEE
Q 000731 22 ILQFSALDIEQNRLFFASS-ANNIYSAQLSSFQNERASIKTAISA-EIEHIDLE--------PGDSITAFDYLM-EKEAL 90 (1325)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~-~~~i~~~~~~~~~~~~~~~~~~l~~-~l~~~~~~--------~~~~V~~v~~sp-dg~~L 90 (1325)
.+.++++|++++.||++.. .+.|..+|. .++. +.++.. +..+..+. ....+.+|+|+| ++...
T Consensus 625 ~P~GIavd~~gn~LYVaDt~n~~Ir~id~--~~~~----V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~Ly 698 (1057)
T PLN02919 625 RPQGLAYNAKKNLLYVADTENHALREIDF--VNET----VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVY 698 (1057)
T ss_pred CCcEEEEeCCCCEEEEEeCCCceEEEEec--CCCE----EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEE
Confidence 4688999999999999865 456778887 3433 222211 10000000 013567999999 45566
Q ss_pred EEEECCCcEEEEeCCCCeEEEecee---------------cCcEEEEEEcCCCCeEEEE-eCCccEEEEeec-Cceeeee
Q 000731 91 IVGTSSGLLLLHSVDGNATEVVGRV---------------EGGVRFISPSPDGDLLGVT-TGFGQILVMTHD-WDLLYEN 153 (1325)
Q Consensus 91 a~as~dG~I~lw~~~~~~~e~vg~~---------------~~~I~~~awSPDG~~LA~~-s~dgtV~l~s~~-~d~~~e~ 153 (1325)
++.+.++.|.+||..++.+..++.. -...+.++|+|||+.|.++ +++++|.+|+.. +.. . .
T Consensus 699 Vad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~-~-~ 776 (1057)
T PLN02919 699 IAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGS-R-L 776 (1057)
T ss_pred EEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcE-E-E
Confidence 6667789999999987765432210 0124569999999855544 667899888632 211 0 0
Q ss_pred eccccC-----------CCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeec-CC
Q 000731 154 PLEELA-----------EGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSE-LK 221 (1325)
Q Consensus 154 ~l~~~~-----------~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e-~~ 221 (1325)
...... ....-+..+| ..-..++|++||..++ +. ..+++|++||..+|.+..... +.
T Consensus 777 ~~gg~~~~~~~l~~fG~~dG~g~~~~l----~~P~Gvavd~dG~LYV-AD------s~N~rIrviD~~tg~v~tiaG~G~ 845 (1057)
T PLN02919 777 LAGGDPTFSDNLFKFGDHDGVGSEVLL----QHPLGVLCAKDGQIYV-AD------SYNHKIKKLDPATKRVTTLAGTGK 845 (1057)
T ss_pred EEecccccCcccccccCCCCchhhhhc----cCCceeeEeCCCcEEE-EE------CCCCEEEEEECCCCeEEEEeccCC
Confidence 000000 0000000011 1235799999998776 33 246899999996665543211 11
Q ss_pred ------------CCceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeCCCc
Q 000731 222 ------------AFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGL 260 (1325)
Q Consensus 222 ------------~~~v~~lawsPdG~~IAs~~~d~~~~~~~~V~~~e~nGl 260 (1325)
-.....|+++|+|+++++-+. .+.|++|+.+..
T Consensus 846 ~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~------Nn~Irvid~~~~ 890 (1057)
T PLN02919 846 AGFKDGKALKAQLSEPAGLALGENGRLFVADTN------NSLIRYLDLNKG 890 (1057)
T ss_pred cCCCCCcccccccCCceEEEEeCCCCEEEEECC------CCEEEEEECCCC
Confidence 013468999999997665544 468999997653
No 276
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=98.31 E-value=9.3e-05 Score=87.83 Aligned_cols=278 Identities=12% Similarity=0.069 Sum_probs=167.7
Q ss_pred CCCEEEEEEccCCCEE-EEEECCCcEEEEeCCCCeEEEeceecC-cEEEEEEcCCCCeEEEEeCCccEEEEeecCceeee
Q 000731 75 GDSITAFDYLMEKEAL-IVGTSSGLLLLHSVDGNATEVVGRVEG-GVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYE 152 (1325)
Q Consensus 75 ~~~V~~v~~spdg~~L-a~as~dG~I~lw~~~~~~~e~vg~~~~-~I~~~awSPDG~~LA~~s~dgtV~l~s~~~d~~~e 152 (1325)
...-+.|..+|||+++ |+|.-.-.|++||+..-.+..--+.+. .|.-.-.|-|-.-++.--.|.+|-+-.+.+ ....
T Consensus 51 p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G-~hy~ 129 (703)
T KOG2321|consen 51 PTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYG-RHYR 129 (703)
T ss_pred ccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcC-eeee
Confidence 3456789999999965 577777889999998755543333333 355555677766667677777764322111 0011
Q ss_pred eeccccCCCceeccCccccCCCCeEEEEE-ecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeecCCCCceeEEEEc
Q 000731 153 NPLEELAEGFDVHEPELSSSFSFKSPISW-RGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWM 231 (1325)
Q Consensus 153 ~~l~~~~~~~~Vs~tqf~~~~~~i~~isW-spDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~~~v~~laws 231 (1325)
..+... + ..+++ +|...++. +++ + ..|.-.|.+.|..+..++...+.++++..+
T Consensus 130 ~RIP~~---------------G--RDm~y~~~scDly~-~gs------g-~evYRlNLEqGrfL~P~~~~~~~lN~v~in 184 (703)
T KOG2321|consen 130 TRIPKF---------------G--RDMKYHKPSCDLYL-VGS------G-SEVYRLNLEQGRFLNPFETDSGELNVVSIN 184 (703)
T ss_pred eecCcC---------------C--ccccccCCCccEEE-eec------C-cceEEEEccccccccccccccccceeeeec
Confidence 111100 0 11222 23344443 332 1 345557998999999888777888999999
Q ss_pred cCCCeEEEEecCCCCCCCCeEEEEeCC-CceEEEEEecc-----CC---CCcEEEEEEccCCCeeEEEEccCCCCeEEEE
Q 000731 232 PSGANIAAVYDRKSENKCPSIVFYERN-GLERSSFDINE-----QI---DSTVELLKWNCMSDLLAAVVRFEEYDSVKIC 302 (1325)
Q Consensus 232 PdG~~IAs~~~d~~~~~~~~V~~~e~n-Gl~~~~f~l~~-----~~---~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW 302 (1325)
|-..+||+|+.+ +.|.|||.- -.+-+...... ++ ...|.+|+|+.||=.+|+|+++| .|-|+
T Consensus 185 ~~hgLla~Gt~~------g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G---~v~iy 255 (703)
T KOG2321|consen 185 EEHGLLACGTED------GVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTG---SVLIY 255 (703)
T ss_pred CccceEEecccC------ceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCC---cEEEE
Confidence 999999999874 679999942 22222222211 11 13599999999999999999999 89999
Q ss_pred EeeCCeeEEEeEEEEecCC-c-EEEEEccCCCcEEEEEecCCcEEEEEEEEeeeeCCCeeEEEEeCCEEEEeecCCcCCC
Q 000731 303 FFSNNHWYLKYEIRYLRRD-G-IRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMP 380 (1325)
Q Consensus 303 ~~~n~~wylkqel~~~~~~-~-~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDG~~l~lt~l~~~~vP 380 (1325)
|+..-..++... |... + ..+.|-+.+ +...++..|-..+++|+-.. .
T Consensus 256 DLRa~~pl~~kd---h~~e~pi~~l~~~~~~-------------------------~q~~v~S~Dk~~~kiWd~~~---G 304 (703)
T KOG2321|consen 256 DLRASKPLLVKD---HGYELPIKKLDWQDTD-------------------------QQNKVVSMDKRILKIWDECT---G 304 (703)
T ss_pred EcccCCceeecc---cCCccceeeecccccC-------------------------CCceEEecchHHhhhccccc---C
Confidence 987643222110 0001 1 334443321 12233444555666664322 2
Q ss_pred CCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeC
Q 000731 381 PPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDL 422 (1325)
Q Consensus 381 pPm~~~~l~~~~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~~ 422 (1325)
.||. .++-...++++.|-|++ -++.++..++.+.-|-+
T Consensus 305 k~~a--siEpt~~lND~C~~p~s--Gm~f~Ane~~~m~~yyi 342 (703)
T KOG2321|consen 305 KPMA--SIEPTSDLNDFCFVPGS--GMFFTANESSKMHTYYI 342 (703)
T ss_pred Ccee--eccccCCcCceeeecCC--ceEEEecCCCcceeEEc
Confidence 3444 34555668999999998 68877766665555444
No 277
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=98.30 E-value=4.7e-06 Score=97.68 Aligned_cols=236 Identities=13% Similarity=0.155 Sum_probs=142.6
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccC--CCEEEEEECCCcE
Q 000731 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLME--KEALIVGTSSGLL 99 (1325)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~V~~v~~spd--g~~La~as~dG~I 99 (1325)
-+.++.|..+|+.|.++|+|--++.||+ +..+. ...++++ | .+.|-++.|.|. .+++++|..|..|
T Consensus 52 CVN~LeWn~dG~lL~SGSDD~r~ivWd~--~~~Kl---lhsI~Tg---H----taNIFsvKFvP~tnnriv~sgAgDk~i 119 (758)
T KOG1310|consen 52 CVNCLEWNADGELLASGSDDTRLIVWDP--FEYKL---LHSISTG---H----TANIFSVKFVPYTNNRIVLSGAGDKLI 119 (758)
T ss_pred eecceeecCCCCEEeecCCcceEEeecc--hhcce---eeeeecc---c----ccceeEEeeeccCCCeEEEeccCcceE
Confidence 5788999999999999999999999999 66664 2322223 3 357999999995 4788999999999
Q ss_pred EEEeCCC--------C---eEEEeceecCcEEEEEEcCCC-CeEEEEeCCccEEEEeecCceeee--eeccccC-CCcee
Q 000731 100 LLHSVDG--------N---ATEVVGRVEGGVRFISPSPDG-DLLGVTTGFGQILVMTHDWDLLYE--NPLEELA-EGFDV 164 (1325)
Q Consensus 100 ~lw~~~~--------~---~~e~vg~~~~~I~~~awSPDG-~~LA~~s~dgtV~l~s~~~d~~~e--~~l~~~~-~~~~V 164 (1325)
+|+|++. + ++.+.+-|...|.-++--|+| .++-++++||+|+-. |. .| .+-+..+ ...-+
T Consensus 120 ~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQy----Di-REph~c~p~~~~~~~l~ 194 (758)
T KOG1310|consen 120 KLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQY----DI-REPHVCNPDEDCPSILV 194 (758)
T ss_pred EEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeee----cc-cCCccCCccccccHHHH
Confidence 9999973 1 122566678889999999999 999999999999543 32 12 1111111 00000
Q ss_pred ccCccccCCCCeEEEEEecCC-cEEEEeeccccccCCCCEEEEEECCCCceeeeecCCCCceeEEEEccCCCeEEEEecC
Q 000731 165 HEPELSSSFSFKSPISWRGDG-KYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDR 243 (1325)
Q Consensus 165 s~tqf~~~~~~i~~isWspDG-~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~~~v~~lawsPdG~~IAs~~~d 243 (1325)
+ ..+.--..-++..+|.. .||| |++.+ --.|+||+.- .+-+ +..+|..-++-
T Consensus 195 n---y~~~lielk~ltisp~rp~~la-VGgsd------pfarLYD~Rr-~lks-------------~~s~~~~~~~p--- 247 (758)
T KOG1310|consen 195 N---YNPQLIELKCLTISPSRPYYLA-VGGSD------PFARLYDRRR-VLKS-------------FRSDGTMNTCP--- 247 (758)
T ss_pred H---hchhhheeeeeeecCCCCceEE-ecCCC------chhhhhhhhh-hccC-------------CCCCccccCCC---
Confidence 0 00000134577888865 5778 87544 4678999511 1110 11111111110
Q ss_pred CCCCCCCeEEEEeCCCceEEEEEeccCCCCcEEEEEEccCCCe-eEEEEccCCCCeEEEEEeeCCe
Q 000731 244 KSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDL-LAAVVRFEEYDSVKICFFSNNH 308 (1325)
Q Consensus 244 ~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~-LAs~~~d~~~~~VqLW~~~n~~ 308 (1325)
+..+..|.-|-..++...+..+... --.+.-+.|||+|+- |++++.+ .|.|+++++..
T Consensus 248 --p~~~~cv~yf~p~hlkn~~gn~~~~-~~~~t~vtfnpNGtElLvs~~gE----hVYlfdvn~~~ 306 (758)
T KOG1310|consen 248 --PKDCRCVRYFSPGHLKNSQGNLDRY-ITCCTYVTFNPNGTELLVSWGGE----HVYLFDVNEDK 306 (758)
T ss_pred --CcccchhheecCccccCcccccccc-eeeeEEEEECCCCcEEEEeeCCe----EEEEEeecCCC
Confidence 0013345445443331111001000 113567999999975 4555444 59999998654
No 278
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.30 E-value=4.1e-05 Score=87.49 Aligned_cols=201 Identities=12% Similarity=0.084 Sum_probs=131.6
Q ss_pred CCEEEEEEccCCCEEEEEECCCcEEEEeCCC-----CeEEEeceecCcEEEEEEcCCCCeEEE-EeCC--ccEEEEeecC
Q 000731 76 DSITAFDYLMEKEALIVGTSSGLLLLHSVDG-----NATEVVGRVEGGVRFISPSPDGDLLGV-TTGF--GQILVMTHDW 147 (1325)
Q Consensus 76 ~~V~~v~~spdg~~La~as~dG~I~lw~~~~-----~~~e~vg~~~~~I~~~awSPDG~~LA~-~s~d--gtV~l~s~~~ 147 (1325)
..|.+++..- ..|.++..+|.+.+|+... ..+... ....++..+.=+|.-..++. |+.. +.+.+|+..-
T Consensus 106 ~~I~gl~~~d--g~Litc~~sG~l~~~~~k~~d~hss~l~~l-a~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~ 182 (412)
T KOG3881|consen 106 KSIKGLKLAD--GTLITCVSSGNLQVRHDKSGDLHSSKLIKL-ATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQ 182 (412)
T ss_pred ccccchhhcC--CEEEEEecCCcEEEEeccCCccccccceee-ecCCceeeeccCCCCCceEecCchhcccceeeeeccc
Confidence 4666666553 3566778899999999873 222211 12367888888877665554 6656 5677775321
Q ss_pred c-ee-eeeeccccC--CCceeccCccccCCCCeEEEEEecC--CcEEEEeeccccccCCCCEEEEEECCCCc-eeeeecC
Q 000731 148 D-LL-YENPLEELA--EGFDVHEPELSSSFSFKSPISWRGD--GKYFATLSEFCNSSKLHKRLKVWERDSGT-LQASSEL 220 (1325)
Q Consensus 148 d-~~-~e~~l~~~~--~~~~Vs~tqf~~~~~~i~~isWspD--G~~lAtvss~d~~~~~d~~irVWd~~~G~-l~~t~e~ 220 (1325)
. .+ .......+. -.-+| .+..+.|-++ .+.|||+. .-+.+|+||...|. ....+.-
T Consensus 183 ~~qiw~aKNvpnD~L~LrVPv----------W~tdi~Fl~g~~~~~fat~T-------~~hqvR~YDt~~qRRPV~~fd~ 245 (412)
T KOG3881|consen 183 SKQIWSAKNVPNDRLGLRVPV----------WITDIRFLEGSPNYKFATIT-------RYHQVRLYDTRHQRRPVAQFDF 245 (412)
T ss_pred ceeeeeccCCCCccccceeee----------eeccceecCCCCCceEEEEe-------cceeEEEecCcccCcceeEecc
Confidence 1 11 111111111 01112 4467778777 77888554 24789999986553 4445555
Q ss_pred CCCceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeCCCceEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEE
Q 000731 221 KAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVK 300 (1325)
Q Consensus 221 ~~~~v~~lawsPdG~~IAs~~~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~Vq 300 (1325)
....+.+++--|+|++|.++.. ...+..||.++..+.-..+. .-.+.|.+|.-.|.+.+||+++-|+ .|+
T Consensus 246 ~E~~is~~~l~p~gn~Iy~gn~------~g~l~~FD~r~~kl~g~~~k-g~tGsirsih~hp~~~~las~GLDR---yvR 315 (412)
T KOG3881|consen 246 LENPISSTGLTPSGNFIYTGNT------KGQLAKFDLRGGKLLGCGLK-GITGSIRSIHCHPTHPVLASCGLDR---YVR 315 (412)
T ss_pred ccCcceeeeecCCCcEEEEecc------cchhheecccCceeeccccC-CccCCcceEEEcCCCceEEeeccce---eEE
Confidence 5667899999999999998865 35688899665443321122 1256899999999999999999999 999
Q ss_pred EEEeeC
Q 000731 301 ICFFSN 306 (1325)
Q Consensus 301 LW~~~n 306 (1325)
|+|..+
T Consensus 316 IhD~kt 321 (412)
T KOG3881|consen 316 IHDIKT 321 (412)
T ss_pred Eeeccc
Confidence 999987
No 279
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=98.26 E-value=1.5e-05 Score=100.34 Aligned_cols=193 Identities=13% Similarity=0.069 Sum_probs=134.7
Q ss_pred eecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEEEeCCCC
Q 000731 28 LDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSVDGN 107 (1325)
Q Consensus 28 ~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~V~~v~~spdg~~La~as~dG~I~lw~~~~~ 107 (1325)
+--+.-.++.++.++.+..||.+ ... ....+..+=+ -+-....-+.++++.-.+++|+.-|.|++|.....
T Consensus 95 l~~e~k~i~l~~~~ns~~i~d~~--~~~---~~~~i~~~er----~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~d 165 (967)
T KOG0974|consen 95 LFEENKKIALVTSRNSLLIRDSK--NSS---VLSKIQSDER----CTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHED 165 (967)
T ss_pred hhhhcceEEEEEcCceEEEEecc--cCc---eehhcCCCce----EEEEeEEEEeccCcEEEEEeccccccEEEEecccc
Confidence 33455667777777778888872 211 1221111100 00123455667888889999999999999998642
Q ss_pred --eEEEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeeeccccCCCceeccCccccCCCCeEEEEEecCC
Q 000731 108 --ATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDG 185 (1325)
Q Consensus 108 --~~e~vg~~~~~I~~~awSPDG~~LA~~s~dgtV~l~s~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG 185 (1325)
.....| |++.|-++.||-||.++|++|.|.++++|.-+ +...+.. +-| +|..+++.+.+.|.
T Consensus 166 n~p~~l~G-HeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~----s~~~~~~---------~~f-gHsaRvw~~~~~~n- 229 (967)
T KOG0974|consen 166 NKPIRLKG-HEGSIFSIVTSLDGRYIASVSDDRSIRLWPID----SREVLGC---------TGF-GHSARVWACCFLPN- 229 (967)
T ss_pred CCcceecc-cCCceEEEEEccCCcEEEEEecCcceeeeecc----cccccCc---------ccc-cccceeEEEEeccc-
Confidence 234667 59999999999999999999999999988532 1111110 011 57789999999998
Q ss_pred cEEEEeeccccccCCCCEEEEEECCCCceeeeecCCC-CceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeCCCc
Q 000731 186 KYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKA-FMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGL 260 (1325)
Q Consensus 186 ~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~-~~v~~lawsPdG~~IAs~~~d~~~~~~~~V~~~e~nGl 260 (1325)
+++ +. +.|.+.|+|+. +|..+.+.+.|. ..++.++..++--.+.+++.| ..+++|+.+|.
T Consensus 230 -~i~-t~------gedctcrvW~~-~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~D------s~lk~~~l~~r 290 (967)
T KOG0974|consen 230 -RII-TV------GEDCTCRVWGV-NGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGND------STLKLWDLNGR 290 (967)
T ss_pred -eeE-Ee------ccceEEEEEec-ccceehhhhhhhhcceeEEEEcCCceEEEeeccC------cchhhhhhhcc
Confidence 677 33 34799999988 888777766554 467899888887777777775 56999998764
No 280
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.20 E-value=0.00019 Score=83.40 Aligned_cols=148 Identities=16% Similarity=0.245 Sum_probs=104.3
Q ss_pred CCEEEEEEccCCCEEEEEECCC-cEEEEeCCCCeEEEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeee
Q 000731 76 DSITAFDYLMEKEALIVGTSSG-LLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENP 154 (1325)
Q Consensus 76 ~~V~~v~~spdg~~La~as~dG-~I~lw~~~~~~~e~vg~~~~~I~~~awSPDG~~LA~~s~dgtV~l~s~~~d~~~e~~ 154 (1325)
+.|.-..+.-|++.+++|..|| .+-++|.+|++++....--+.|.++.-||||+.++.+..... +|.-+-+.-.-..
T Consensus 360 ~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~e--l~vididngnv~~ 437 (668)
T COG4946 360 GGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVANDRFE--LWVIDIDNGNVRL 437 (668)
T ss_pred CceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEcCceE--EEEEEecCCCeeE
Confidence 5688889999999999999999 688899999987743332467999999999999988766544 4543222111111
Q ss_pred ccccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeecCCCCceeEEEEccCC
Q 000731 155 LEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSG 234 (1325)
Q Consensus 155 l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~~~v~~lawsPdG 234 (1325)
+.. ...+-|+.+.|+|++++|| -+..+ +--.+.|+++|.++|+......+. +.-.+-||-|||
T Consensus 438 idk-------------S~~~lItdf~~~~nsr~iA-YafP~--gy~tq~Iklydm~~~Kiy~vTT~t-a~DfsPaFD~d~ 500 (668)
T COG4946 438 IDK-------------SEYGLITDFDWHPNSRWIA-YAFPE--GYYTQSIKLYDMDGGKIYDVTTPT-AYDFSPAFDPDG 500 (668)
T ss_pred ecc-------------cccceeEEEEEcCCceeEE-EecCc--ceeeeeEEEEecCCCeEEEecCCc-ccccCcccCCCC
Confidence 111 1235679999999999999 56432 123478999999666766554432 223567999999
Q ss_pred CeEEEEec
Q 000731 235 ANIAAVYD 242 (1325)
Q Consensus 235 ~~IAs~~~ 242 (1325)
++|.--+.
T Consensus 501 ryLYfLs~ 508 (668)
T COG4946 501 RYLYFLSA 508 (668)
T ss_pred cEEEEEec
Confidence 98876654
No 281
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.18 E-value=0.00018 Score=91.79 Aligned_cols=179 Identities=13% Similarity=0.095 Sum_probs=106.8
Q ss_pred EeCCCCeEEEeceecCcEEEEEEcCCC-CeEEEEeCCccEEEEeecCceeeeeeccccCCCceeccCccccCCCCeEEEE
Q 000731 102 HSVDGNATEVVGRVEGGVRFISPSPDG-DLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPIS 180 (1325)
Q Consensus 102 w~~~~~~~e~vg~~~~~I~~~awSPDG-~~LA~~s~dgtV~l~s~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~is 180 (1325)
|++.|..+-.+-.|...|...+-|++. .+++++|.||||++|+.. +...+. .. .=++..++.-.+.+..+.
T Consensus 1034 W~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~-k~~~~~----~s---~rS~ltys~~~sr~~~vt 1105 (1431)
T KOG1240|consen 1034 WNPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLR-KLEGEG----GS---ARSELTYSPEGSRVEKVT 1105 (1431)
T ss_pred CCccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeeh-hhhcCc----ce---eeeeEEEeccCCceEEEE
Confidence 777775555444456667776666554 999999999999999631 111110 00 000111222235678888
Q ss_pred EecCCcEEEEeeccccccCCCCEEEEEECCC--Cceeeeec------CCCC-ceeEEEEcc-CCC-eEEEEecCCCCCCC
Q 000731 181 WRGDGKYFATLSEFCNSSKLHKRLKVWERDS--GTLQASSE------LKAF-MGAVLEWMP-SGA-NIAAVYDRKSENKC 249 (1325)
Q Consensus 181 WspDG~~lAtvss~d~~~~~d~~irVWd~~~--G~l~~t~e------~~~~-~v~~lawsP-dG~-~IAs~~~d~~~~~~ 249 (1325)
.-+.|..|| +|+ .||.|++.+.+- +....... ..+| .+..-+|.- ++. .++.+...
T Consensus 1106 ~~~~~~~~A-v~t------~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~------ 1172 (1431)
T KOG1240|consen 1106 MCGNGDQFA-VST------KDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDL------ 1172 (1431)
T ss_pred eccCCCeEE-EEc------CCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEec------
Confidence 889999999 874 468888887632 21111110 1122 233334432 233 44444442
Q ss_pred CeEEEEeCCCceEEEEEecc-CCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEee
Q 000731 250 PSIVFYERNGLERSSFDINE-QIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFS 305 (1325)
Q Consensus 250 ~~V~~~e~nGl~~~~f~l~~-~~~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~ 305 (1325)
..|+.||.- .+|.-+++.. +..+.|.+++-+|-+..|++|+..| .+-+||+.
T Consensus 1173 ~~iv~~D~r-~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G---~l~lWDLR 1225 (1431)
T KOG1240|consen 1173 SRIVSWDTR-MRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRG---QLVLWDLR 1225 (1431)
T ss_pred cceEEecch-hhhhHHhhhcCccccceeEEEecCCceEEEEecCCc---eEEEEEee
Confidence 458888842 2233233331 2246799999999999999999988 89999985
No 282
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=98.11 E-value=4.4e-05 Score=89.81 Aligned_cols=157 Identities=13% Similarity=0.122 Sum_probs=110.0
Q ss_pred ccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCce-eeeecCCCCceeEEEEccC--CCeEEEEecCC
Q 000731 168 ELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTL-QASSELKAFMGAVLEWMPS--GANIAAVYDRK 244 (1325)
Q Consensus 168 qf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l-~~t~e~~~~~v~~lawsPd--G~~IAs~~~d~ 244 (1325)
.+.||.+-|.++.|+.||.+|| ++|. |-.+-|||.-.-++ +++..+|.+-|-++-|=|- .++|+||..|
T Consensus 45 eL~GH~GCVN~LeWn~dG~lL~-SGSD------D~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgD- 116 (758)
T KOG1310|consen 45 ELTGHTGCVNCLEWNADGELLA-SGSD------DTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGD- 116 (758)
T ss_pred hhccccceecceeecCCCCEEe-ecCC------cceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCc-
Confidence 3448999999999999999999 6653 46788999865444 5567889999999999994 3467888775
Q ss_pred CCCCCCeEEEEeCCCceEEEE------Eec--cCCCCcEEEEEEccCC-CeeEEEEccCCCCeEEEEEeeCCeeEEEeEE
Q 000731 245 SENKCPSIVFYERNGLERSSF------DIN--EQIDSTVELLKWNCMS-DLLAAVVRFEEYDSVKICFFSNNHWYLKYEI 315 (1325)
Q Consensus 245 ~~~~~~~V~~~e~nGl~~~~f------~l~--~~~~~~V~~laWSpDg-~~LAs~~~d~~~~~VqLW~~~n~~wylkqel 315 (1325)
..|++|+.+.+..+.. ++. .-+...|..|+=-|+| ..+-++++|| +|+=+|+...|- .++..
T Consensus 117 -----k~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDG---tirQyDiREph~-c~p~~ 187 (758)
T KOG1310|consen 117 -----KLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDG---TIRQYDIREPHV-CNPDE 187 (758)
T ss_pred -----ceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCc---ceeeecccCCcc-CCccc
Confidence 4699999764322210 011 1234578899999999 7888999999 999999875442 12221
Q ss_pred EEec-------C--CcEEEEEccCCCcEEEEEecC
Q 000731 316 RYLR-------R--DGIRFMWHPTKPLQLICWTLD 341 (1325)
Q Consensus 316 ~~~~-------~--~~~~v~Wsp~~~~~L~~~~~~ 341 (1325)
..+. . +-.++.-+|..|..|.++..+
T Consensus 188 ~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsd 222 (758)
T KOG1310|consen 188 DCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSD 222 (758)
T ss_pred cccHHHHHhchhhheeeeeeecCCCCceEEecCCC
Confidence 1111 1 114677889888888887643
No 283
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.11 E-value=1.1e-05 Score=93.44 Aligned_cols=228 Identities=10% Similarity=0.033 Sum_probs=155.6
Q ss_pred eeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEEE
Q 000731 23 LQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLH 102 (1325)
Q Consensus 23 ~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~V~~v~~spdg~~La~as~dG~I~lw 102 (1325)
+.-+-|...|.-+..+.-.+.+-..|- .+++....+. + ...|.++.|+-.-+++|+| ...-+.+|
T Consensus 132 PY~~~ytrnGrhlllgGrKGHlAa~Dw--~t~~L~~Ei~-----v-------~Etv~Dv~~LHneq~~AVA-QK~y~yvY 196 (545)
T KOG1272|consen 132 PYHLDYTRNGRHLLLGGRKGHLAAFDW--VTKKLHFEIN-----V-------METVRDVTFLHNEQFFAVA-QKKYVYVY 196 (545)
T ss_pred CeeeeecCCccEEEecCCccceeeeec--ccceeeeeee-----h-------hhhhhhhhhhcchHHHHhh-hhceEEEe
Confidence 344566667777777776665666665 4555433322 1 3578999999999999887 46678999
Q ss_pred eCCCCeEEEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEe-ecCceeeeeeccccCCCceeccCccccCCCCeEEEEE
Q 000731 103 SVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMT-HDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISW 181 (1325)
Q Consensus 103 ~~~~~~~e~vg~~~~~I~~~awSPDG~~LA~~s~dgtV~l~s-~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isW 181 (1325)
|-++.++-|+-. ..+|..+.|=|--=+||+++..|-+.--+ ..+..+.++. ...+.+..++=
T Consensus 197 D~~GtElHClk~-~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~----------------t~~G~~~vm~q 259 (545)
T KOG1272|consen 197 DNNGTELHCLKR-HIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIR----------------TGAGRTDVMKQ 259 (545)
T ss_pred cCCCcEEeehhh-cCchhhhcccchhheeeecccCCceEEEeechhhhhHHHH----------------ccCCccchhhc
Confidence 999988888876 46799999999999999999988775432 1122222211 11123345555
Q ss_pred ecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeecCCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeCCCce
Q 000731 182 RGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLE 261 (1325)
Q Consensus 182 spDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~~~v~~lawsPdG~~IAs~~~d~~~~~~~~V~~~e~nGl~ 261 (1325)
+|-...+- ++ ...|+|-+|++..-+.+...--|.+.|.+||+.|+|++.|+++-| ..|++||.-+..
T Consensus 260 NP~NaVih-~G------hsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~D------r~~kIWDlR~~~ 326 (545)
T KOG1272|consen 260 NPYNAVIH-LG------HSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLD------RKVKIWDLRNFY 326 (545)
T ss_pred CCccceEE-Ec------CCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccc------cceeEeeecccc
Confidence 66666555 44 346899999996666655555699999999999999999999986 579999954332
Q ss_pred EEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEE
Q 000731 262 RSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICF 303 (1325)
Q Consensus 262 ~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~ 303 (1325)
+- .++..+ .....+++|--| +||.+..+ .|+||-
T Consensus 327 ql-~t~~tp--~~a~~ls~Sqkg-lLA~~~G~----~v~iw~ 360 (545)
T KOG1272|consen 327 QL-HTYRTP--HPASNLSLSQKG-LLALSYGD----HVQIWK 360 (545)
T ss_pred cc-ceeecC--CCcccccccccc-ceeeecCC----eeeeeh
Confidence 11 112221 246678888777 56666555 488886
No 284
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.08 E-value=0.0016 Score=79.94 Aligned_cols=130 Identities=14% Similarity=0.125 Sum_probs=79.9
Q ss_pred EEEEEEccCCCEEEEEECCCcEEEEeCCC-CeEEEeceecCcEEEEEEcCC------C------CeEEEEeCCccEEEEe
Q 000731 78 ITAFDYLMEKEALIVGTSSGLLLLHSVDG-NATEVVGRVEGGVRFISPSPD------G------DLLGVTTGFGQILVMT 144 (1325)
Q Consensus 78 V~~v~~spdg~~La~as~dG~I~lw~~~~-~~~e~vg~~~~~I~~~awSPD------G------~~LA~~s~dgtV~l~s 144 (1325)
-.++.|+|.| .+|-|+. .-|.+.|..+ +.+..+..|...|+.+.|+|- + =+||++.-.|.|.+|+
T Consensus 18 ~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d 95 (1062)
T KOG1912|consen 18 RNAADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVD 95 (1062)
T ss_pred ccccccCccc-eEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEE
Confidence 5678899987 5565553 3566777665 445677788999999999874 1 2567777788998875
Q ss_pred e-cCceeeeeeccccCCCceeccCccccCCCCeEEEE---EecCCc-EEEEeeccccccCCCCEEEEEECCCCceeeeec
Q 000731 145 H-DWDLLYENPLEELAEGFDVHEPELSSSFSFKSPIS---WRGDGK-YFATLSEFCNSSKLHKRLKVWERDSGTLQASSE 219 (1325)
Q Consensus 145 ~-~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~is---WspDG~-~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e 219 (1325)
- ..-.+... +.+.+.+..+. |++|.+ +|+++. +..++-+||..+|++.....
T Consensus 96 ~~~~s~~~~l----------------~~~~~~~qdl~W~~~rd~Srd~LlaIh-------~ss~lvLwntdtG~k~Wk~~ 152 (1062)
T KOG1912|consen 96 FVLASVINWL----------------SHSNDSVQDLCWVPARDDSRDVLLAIH-------GSSTLVLWNTDTGEKFWKYD 152 (1062)
T ss_pred ehhhhhhhhh----------------cCCCcchhheeeeeccCcchheeEEec-------CCcEEEEEEccCCceeeccc
Confidence 2 11111111 12223334444 567784 444232 34799999999999877644
Q ss_pred CCCCceeEEEEcc
Q 000731 220 LKAFMGAVLEWMP 232 (1325)
Q Consensus 220 ~~~~~v~~lawsP 232 (1325)
..+....++.+-|
T Consensus 153 ys~~iLs~f~~DP 165 (1062)
T KOG1912|consen 153 YSHEILSCFRVDP 165 (1062)
T ss_pred cCCcceeeeeeCC
Confidence 3333334455555
No 285
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.07 E-value=7.6e-05 Score=90.50 Aligned_cols=170 Identities=16% Similarity=0.145 Sum_probs=103.7
Q ss_pred cEEEEeCCCCeEEEeceecCcEEEEEEcCCCCeEEEEeC--Cc--cEEEEeecCceeeeeeccccCCCceeccCccccCC
Q 000731 98 LLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTG--FG--QILVMTHDWDLLYENPLEELAEGFDVHEPELSSSF 173 (1325)
Q Consensus 98 ~I~lw~~~~~~~e~vg~~~~~I~~~awSPDG~~LA~~s~--dg--tV~l~s~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~ 173 (1325)
.+.+-|.++.....+..-...+...+|||||..++..+- .+ .+.+++..... .+.. + .|.+
T Consensus 174 ~l~~~D~dg~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~-~~~i---------~---~~~g-- 238 (425)
T COG0823 174 ELALGDYDGYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGK-RPVI---------L---NFNG-- 238 (425)
T ss_pred eEEEEccCCcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCc-ccee---------e---ccCC--
Confidence 344444443223334433456888999999999998842 22 24333321110 0010 1 1111
Q ss_pred CCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeecCCCCceeEEEEccCCCeEEEEecCCCCCCCCeEE
Q 000731 174 SFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIV 253 (1325)
Q Consensus 174 ~~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~~~v~~lawsPdG~~IAs~~~d~~~~~~~~V~ 253 (1325)
.-...+|||||+++|.++.- .+...|.+.|...++ ...+....+.-..-+|+|||+.|+.+++..+ ...|-
T Consensus 239 -~~~~P~fspDG~~l~f~~~r----dg~~~iy~~dl~~~~-~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G---~p~I~ 309 (425)
T COG0823 239 -NNGAPAFSPDGSKLAFSSSR----DGSPDIYLMDLDGKN-LPRLTNGFGINTSPSWSPDGSKIVFTSDRGG---RPQIY 309 (425)
T ss_pred -ccCCccCCCCCCEEEEEECC----CCCccEEEEcCCCCc-ceecccCCccccCccCCCCCCEEEEEeCCCC---CcceE
Confidence 22457899999999944432 244678888984444 3334444455557899999999999988654 56788
Q ss_pred EEeCCCceEEEEEeccCCCCcEEEEEEccCCCeeEEEEccC
Q 000731 254 FYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFE 294 (1325)
Q Consensus 254 ~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~ 294 (1325)
..+.+|......+..... .. .-.|||||+.||..+..+
T Consensus 310 ~~~~~g~~~~riT~~~~~--~~-~p~~SpdG~~i~~~~~~~ 347 (425)
T COG0823 310 LYDLEGSQVTRLTFSGGG--NS-NPVWSPDGDKIVFESSSG 347 (425)
T ss_pred EECCCCCceeEeeccCCC--Cc-CccCCCCCCEEEEEeccC
Confidence 888888655444333221 12 678999999999988653
No 286
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.06 E-value=0.0015 Score=74.89 Aligned_cols=232 Identities=13% Similarity=0.008 Sum_probs=131.9
Q ss_pred ceeEEeeec-CCCEEEEEeCCC-cEEEEecccccccccceeeccccc--cccccCCCCCCEEEEEEccCCCEEEEE----
Q 000731 22 ILQFSALDI-EQNRLFFASSAN-NIYSAQLSSFQNERASIKTAISAE--IEHIDLEPGDSITAFDYLMEKEALIVG---- 93 (1325)
Q Consensus 22 ~~~~~~~d~-~~~~l~~~s~~~-~i~~~~~~~~~~~~~~~~~~l~~~--l~~~~~~~~~~V~~v~~spdg~~La~a---- 93 (1325)
..-+.+..+ ....|+|+---+ ..+.+|. .++.....+. -+.+ +-+| -.|||||+.|.+.
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~--~~g~~~~~~~-a~~gRHFyGH----------g~fs~dG~~LytTEnd~ 72 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDC--RTGQLLQRLW-APPGRHFYGH----------GVFSPDGRLLYTTENDY 72 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEc--CCCceeeEEc-CCCCCEEecC----------EEEcCCCCEEEEecccc
Confidence 566677777 456666665433 4667787 5655311111 1111 1122 4599999999864
Q ss_pred -ECCCcEEEEeCCCC--eEEEeceecCcEEEEEEcCCCCeEEEEeCC-------ccEEE-----------E-eecCceee
Q 000731 94 -TSSGLLLLHSVDGN--ATEVVGRVEGGVRFISPSPDGDLLGVTTGF-------GQILV-----------M-THDWDLLY 151 (1325)
Q Consensus 94 -s~dG~I~lw~~~~~--~~e~vg~~~~~I~~~awSPDG~~LA~~s~d-------gtV~l-----------~-s~~~d~~~ 151 (1325)
+..|-|-+||...+ ++.....+--+---+.|.|||++|+++.+- |..++ + ..+++.+.
T Consensus 73 ~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~ 152 (305)
T PF07433_consen 73 ETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLE 152 (305)
T ss_pred CCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceee
Confidence 55678999999832 233332222334567899999999998541 22222 1 11222222
Q ss_pred eeeccccCCCceeccCccccCCCCeEEEEEecCCcEEEEeecccccc-CCCCEEEEEECCCCceeeeec------CCCCc
Q 000731 152 ENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSS-KLHKRLKVWERDSGTLQASSE------LKAFM 224 (1325)
Q Consensus 152 e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~-~~d~~irVWd~~~G~l~~t~e------~~~~~ 224 (1325)
...+.+. -|...+..++|++||..+. ..=..+.. ..--.+-++++ .+.+..... ...+.
T Consensus 153 q~~Lp~~------------~~~lSiRHLa~~~~G~V~~-a~Q~qg~~~~~~PLva~~~~-g~~~~~~~~p~~~~~~l~~Y 218 (305)
T PF07433_consen 153 QVELPPD------------LHQLSIRHLAVDGDGTVAF-AMQYQGDPGDAPPLVALHRR-GGALRLLPAPEEQWRRLNGY 218 (305)
T ss_pred eeecCcc------------ccccceeeEEecCCCcEEE-EEecCCCCCccCCeEEEEcC-CCcceeccCChHHHHhhCCc
Confidence 2222111 1345688999999997554 22121110 01124666766 443333221 24567
Q ss_pred eeEEEEccCCCeEEEEecCCCCCCCCeEEEEeC-CCceEEEEEeccCCCCcEEEEEEccCCCeeEEEE
Q 000731 225 GAVLEWMPSGANIAAVYDRKSENKCPSIVFYER-NGLERSSFDINEQIDSTVELLKWNCMSDLLAAVV 291 (1325)
Q Consensus 225 v~~lawsPdG~~IAs~~~d~~~~~~~~V~~~e~-nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~ 291 (1325)
+.+|+++++|.+||.++-. .+.+.+|+. +|...+...+ ..+..|+-.+++ .|++.+
T Consensus 219 ~gSIa~~~~g~~ia~tsPr-----Gg~~~~~d~~tg~~~~~~~l-----~D~cGva~~~~~-f~~ssG 275 (305)
T PF07433_consen 219 IGSIAADRDGRLIAVTSPR-----GGRVAVWDAATGRLLGSVPL-----PDACGVAPTDDG-FLVSSG 275 (305)
T ss_pred eEEEEEeCCCCEEEEECCC-----CCEEEEEECCCCCEeecccc-----CceeeeeecCCc-eEEeCC
Confidence 8999999999999888764 468999974 4544433222 247788888888 555544
No 287
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.00 E-value=0.00014 Score=87.85 Aligned_cols=81 Identities=16% Similarity=0.220 Sum_probs=66.8
Q ss_pred CCCEEEEEEccCCCEEEEEECCCcEEEEeCCCCeEEEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeee
Q 000731 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENP 154 (1325)
Q Consensus 75 ~~~V~~v~~spdg~~La~as~dG~I~lw~~~~~~~e~vg~~~~~I~~~awSPDG~~LA~~s~dgtV~l~s~~~d~~~e~~ 154 (1325)
...|++.+++|+.+.|++|..||.|++||...+..... ...--.+.++|.|||..++++++.|.+.+|+.--.++.-..
T Consensus 259 ~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~-ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALspi~~qL 337 (545)
T PF11768_consen 259 PSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA-KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSPIKMQL 337 (545)
T ss_pred CCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee-eecccceEEEEcCCCcEEEEEcCCceEEEEEeecCccceee
Confidence 56899999999999999999999999999987654433 22445788999999999999999999999987666665444
Q ss_pred cc
Q 000731 155 LE 156 (1325)
Q Consensus 155 l~ 156 (1325)
+.
T Consensus 338 ls 339 (545)
T PF11768_consen 338 LS 339 (545)
T ss_pred cc
Confidence 43
No 288
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.00 E-value=0.0066 Score=68.49 Aligned_cols=229 Identities=15% Similarity=0.077 Sum_probs=132.4
Q ss_pred EEEEcc-CCCEEEEEECCCcEEEEeCCCCeEEEeceecCcEEEEEEc-CCCCeEEEEeCCccEEEEe-ecC--ceeeeee
Q 000731 80 AFDYLM-EKEALIVGTSSGLLLLHSVDGNATEVVGRVEGGVRFISPS-PDGDLLGVTTGFGQILVMT-HDW--DLLYENP 154 (1325)
Q Consensus 80 ~v~~sp-dg~~La~as~dG~I~lw~~~~~~~e~vg~~~~~I~~~awS-PDG~~LA~~s~dgtV~l~s-~~~--d~~~e~~ 154 (1325)
++.|.+ ++..+++-...|.|.-|+..++....... .+...+++. |||.++ ++...+.. +++ ... .++....
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~--~~~~G~~~~~~~g~l~-v~~~~~~~-~~d~~~g~~~~~~~~~ 79 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDL--PGPNGMAFDRPDGRLY-VADSGGIA-VVDPDTGKVTVLADLP 79 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEES--SSEEEEEEECTTSEEE-EEETTCEE-EEETTTTEEEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEec--CCCceEEEEccCCEEE-EEEcCceE-EEecCCCcEEEEeecc
Confidence 567888 66677777789999999999987765432 237777888 775554 44555443 333 111 1111111
Q ss_pred ccccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCC--CEEEEEECCCCceeeeecCCCCceeEEEEcc
Q 000731 155 LEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLH--KRLKVWERDSGTLQASSELKAFMGAVLEWMP 232 (1325)
Q Consensus 155 l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d--~~irVWd~~~G~l~~t~e~~~~~v~~lawsP 232 (1325)
- . . ........+++.|||.+.++....... ... +.|..++. +|+.....+... ..+.|+|+|
T Consensus 80 ~---~-~---------~~~~~~ND~~vd~~G~ly~t~~~~~~~-~~~~~g~v~~~~~-~~~~~~~~~~~~-~pNGi~~s~ 143 (246)
T PF08450_consen 80 D---G-G---------VPFNRPNDVAVDPDGNLYVTDSGGGGA-SGIDPGSVYRIDP-DGKVTVVADGLG-FPNGIAFSP 143 (246)
T ss_dssp T---T-C---------SCTEEEEEEEE-TTS-EEEEEECCBCT-TCGGSEEEEEEET-TSEEEEEEEEES-SEEEEEEET
T ss_pred C---C-C---------cccCCCceEEEcCCCCEEEEecCCCcc-ccccccceEEECC-CCeEEEEecCcc-cccceEECC
Confidence 0 0 0 011245789999999988744322111 111 56777888 477665554433 348999999
Q ss_pred CCCeEEEEecCCCCCCCCeEEEEeCC--Cc-e-EEEEEeccCC-CCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCC
Q 000731 233 SGANIAAVYDRKSENKCPSIVFYERN--GL-E-RSSFDINEQI-DSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNN 307 (1325)
Q Consensus 233 dG~~IAs~~~d~~~~~~~~V~~~e~n--Gl-~-~~~f~l~~~~-~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~n~ 307 (1325)
||+.|..+... .+.|.-|+.+ +. . ........+. .+..-.+++.++|.+.++....+ .|+.++....
T Consensus 144 dg~~lyv~ds~-----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~---~I~~~~p~G~ 215 (246)
T PF08450_consen 144 DGKTLYVADSF-----NGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGG---RIVVFDPDGK 215 (246)
T ss_dssp TSSEEEEEETT-----TTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTT---EEEEEETTSC
T ss_pred cchheeecccc-----cceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCC---EEEEECCCcc
Confidence 99987765543 3567767653 32 1 1111122121 23477899999999877766555 6888887742
Q ss_pred eeEEEeEEEEecCCcEEEEEccCCCcEEEEEe
Q 000731 308 HWYLKYEIRYLRRDGIRFMWHPTKPLQLICWT 339 (1325)
Q Consensus 308 ~wylkqel~~~~~~~~~v~Wsp~~~~~L~~~~ 339 (1325)
+...+..+...++.++|......+|.+.+
T Consensus 216 ---~~~~i~~p~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 216 ---LLREIELPVPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp ---EEEEEE-SSSSEEEEEEESTTSSEEEEEE
T ss_pred ---EEEEEcCCCCCEEEEEEECCCCCEEEEEe
Confidence 34556665344478888544444566544
No 289
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.97 E-value=0.035 Score=69.37 Aligned_cols=209 Identities=20% Similarity=0.271 Sum_probs=123.2
Q ss_pred CCCCCChhhHHHHHHHHHhhccHHHHHHHHHhccChhHHHHHHHHhcCCcccchHhHHHHhcC--Cchhcc--ccHHHhh
Q 000731 869 EPRRMSYPSAEEALKHLLWLADSEAVYEAALGLYDLNLAAIVALNSQRDPKEFLPYLQELESM--PPLLMR--YTIDLRL 944 (1325)
Q Consensus 869 ~~~~~~~~~ae~alkyl~~L~d~n~Ly~~ALg~YD~~lal~VAq~sqkDPkeYLpfL~~L~~l--~~~~~~--~~Id~~L 944 (1325)
++.+.++.--|-.|-+.++ +--.=|...+..|+-+|=-.-++-+---|+ +++- +...++ ++..-|-
T Consensus 449 ~~~rL~p~vYemvLve~L~--~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q--------~~q~Se~~~L~e~La~LYl~d 518 (846)
T KOG2066|consen 449 GPPRLKPLVYEMVLVEFLA--SDVKGFLELIKEWPGHLYSVLTIISATEPQ--------IKQNSESTALLEVLAHLYLYD 518 (846)
T ss_pred CCcccCchHHHHHHHHHHH--HHHHHHHHHHHhCChhhhhhhHHHhhcchH--------HHhhccchhHHHHHHHHHHHc
Confidence 3444445555666665555 444456778888887662221222211121 3332 112222 2344455
Q ss_pred cCHHHHHHHHHHcCCCcHHHHHHHHHHHhcChHHHHhhc-----CCcHH-------------HHHHHHHHHHHHhccccH
Q 000731 945 QRFENALKHIVSMGDSYHADCLNLMKKYAQLFPLGLKLI-----TDPAK-------------MEQVLEAWADHLSDVKCF 1006 (1325)
Q Consensus 945 ~rye~Al~~l~~~g~~~~d~ale~~~~~~~ly~~AL~L~-----~d~~~-------------~~~i~~~~a~~L~~~~~~ 1006 (1325)
++|++|+++|.++-. .++.+++++| .||+++.+.. -+.++ -..+. +.++++.+|
T Consensus 519 ~~Y~~Al~~ylklk~---~~vf~lI~k~-nL~d~i~~~Iv~Lmll~skka~~lLldn~d~ip~a~Vv----eql~~~P~~ 590 (846)
T KOG2066|consen 519 NKYEKALPIYLKLQD---KDVFDLIKKH-NLFDQIKDQIVLLMLLDSKKAIDLLLDNRDSISPSEVV----EQLEDNPKL 590 (846)
T ss_pred cChHHHHHHHHhccC---hHHHHHHHHH-hhHHHHHHHHHHHHccchhhHHHHHhhccccCCHHHHH----HHHhcChHH
Confidence 889999999999865 7888999999 9999887643 12211 11111 222233333
Q ss_pred HHHHHHHHHcCC-------HHHHHHHHHHc------------C--CHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCC
Q 000731 1007 EDAATTYFCCSS-------LEKAMKAYRAS------------G--NWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGK 1065 (1325)
Q Consensus 1007 ~eAa~~y~~ag~-------~ekAl~~y~~a------------g--~W~~al~la~~l~~~~~~~~~l~~~la~~L~~~~~ 1065 (1325)
.-+-..+.--.+ .+++++.|.+- . +.++|+.++.+.+ .+.++.--|..+|.
T Consensus 591 l~~YL~kl~~rd~~~~~~y~dk~I~LYAEyDrk~LLPFLr~s~~Y~lekA~eiC~q~~--------~~~E~VYlLgrmGn 662 (846)
T KOG2066|consen 591 LYCYLHKLFKRDHFMGSEYHDKQIELYAEYDRKKLLPFLRKSQNYNLEKALEICSQKN--------FYEELVYLLGRMGN 662 (846)
T ss_pred HHHHHHHHhhcCccccchhhhHHHHHHHHHhHhhhhHHHHhcCCCCHHHHHHHHHhhC--------cHHHHHHHHHhhcc
Confidence 333333222222 24455555432 2 4778888887643 56677777888999
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhc---CHHHHHHHHHhc
Q 000731 1066 PGEAAKIALDYCGDVTNGISLLIDAR---DWEEALRVAFMH 1103 (1325)
Q Consensus 1066 ~~eAa~i~~~yl~d~e~Av~~~~~~~---~w~eA~rLa~~~ 1103 (1325)
..+|-.+-.+-++|++.||+.+.+-+ .|++-+.....+
T Consensus 663 ~k~AL~lII~el~die~AIefvKeq~D~eLWe~LI~~~ldk 703 (846)
T KOG2066|consen 663 AKEALKLIINELRDIEKAIEFVKEQDDSELWEDLINYSLDK 703 (846)
T ss_pred hHHHHHHHHHHhhCHHHHHHHHHhcCCHHHHHHHHHHhhcC
Confidence 99998888777999999999877554 488777654443
No 290
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.96 E-value=0.00047 Score=82.81 Aligned_cols=188 Identities=12% Similarity=0.084 Sum_probs=126.4
Q ss_pred cCCCEEEEEECCCcEEEEeCCCCeEE--Eec--eecCcEEEEEE--------------------cCCCCeEEEEeCCccE
Q 000731 85 MEKEALIVGTSSGLLLLHSVDGNATE--VVG--RVEGGVRFISP--------------------SPDGDLLGVTTGFGQI 140 (1325)
Q Consensus 85 pdg~~La~as~dG~I~lw~~~~~~~e--~vg--~~~~~I~~~aw--------------------SPDG~~LA~~s~dgtV 140 (1325)
|-+.++|..+.||.+++|+...+++. ... +..+.-.+..| |-|-..||.|+..|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 44678899999999999998776542 211 12233344444 3344567777777777
Q ss_pred EEEeecCceeeeeeccccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeecC
Q 000731 141 LVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSEL 220 (1325)
Q Consensus 141 ~l~s~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~ 220 (1325)
.+.+-...-++-. +.++ .|++.+..+.|+.+-..|= ++ +++.+|-.|+..+++.......
T Consensus 83 ~~ys~~~g~it~~-~st~------------~h~~~v~~~~~~~~~~ciy-S~------~ad~~v~~~~~~~~~~~~~~~~ 142 (541)
T KOG4547|consen 83 LLYSVAGGEITAK-LSTD------------KHYGNVNEILDAQRLGCIY-SV------GADLKVVYILEKEKVIIRIWKE 142 (541)
T ss_pred EEEEecCCeEEEE-EecC------------CCCCcceeeecccccCceE-ec------CCceeEEEEecccceeeeeecc
Confidence 7654322111111 1111 4778899999999888877 33 3468999999989999888888
Q ss_pred CCCceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeCCCce-EEEEEeccCCCCcEEEEEEccC-----CCe-eEEEEcc
Q 000731 221 KAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLE-RSSFDINEQIDSTVELLKWNCM-----SDL-LAAVVRF 293 (1325)
Q Consensus 221 ~~~~v~~lawsPdG~~IAs~~~d~~~~~~~~V~~~e~nGl~-~~~f~l~~~~~~~V~~laWSpD-----g~~-LAs~~~d 293 (1325)
....+.+++.+|||..++++++ .|++|+.+... ...| + +|.+.|..++|--+ |.+ |.+....
T Consensus 143 ~~~~~~sl~is~D~~~l~~as~--------~ik~~~~~~kevv~~f--t-gh~s~v~t~~f~~~~~g~~G~~vLssa~~~ 211 (541)
T KOG4547|consen 143 QKPLVSSLCISPDGKILLTASR--------QIKVLDIETKEVVITF--T-GHGSPVRTLSFTTLIDGIIGKYVLSSAAAE 211 (541)
T ss_pred CCCccceEEEcCCCCEEEeccc--------eEEEEEccCceEEEEe--c-CCCcceEEEEEEEeccccccceeeeccccc
Confidence 8888999999999999999986 59999976432 2222 2 34568999999877 443 4444433
Q ss_pred CCCCeEEEEEeeC
Q 000731 294 EEYDSVKICFFSN 306 (1325)
Q Consensus 294 ~~~~~VqLW~~~n 306 (1325)
. .+-+|-+.+
T Consensus 212 r---~i~~w~v~~ 221 (541)
T KOG4547|consen 212 R---GITVWVVEK 221 (541)
T ss_pred c---ceeEEEEEc
Confidence 3 466666654
No 291
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=97.93 E-value=0.0012 Score=74.55 Aligned_cols=237 Identities=12% Similarity=0.057 Sum_probs=154.3
Q ss_pred eeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEEE
Q 000731 23 LQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLH 102 (1325)
Q Consensus 23 ~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~V~~v~~spdg~~La~as~dG~I~lw 102 (1325)
+.+...-+-.+.|+.+|+|..+..|--- .+++- |.. +. + .. ...+.++.|.++...|.+|..+|+|.-+
T Consensus 27 vn~~~l~~~e~gv~~~s~drtvrv~lkr-ds~q~-wps------I~-~-~m-P~~~~~~~y~~e~~~L~vg~~ngtvtef 95 (404)
T KOG1409|consen 27 VNAAILIPKEEGVISVSEDRTVRVWLKR-DSGQY-WPS------IY-H-YM-PSPCSAMEYVSESRRLYVGQDNGTVTEF 95 (404)
T ss_pred hhhheeccCCCCeEEccccceeeeEEec-ccccc-Cch------hh-h-hC-CCCceEeeeeccceEEEEEEecceEEEE
Confidence 3334444556778889998877666320 12221 110 11 0 11 3578999999999999999999999988
Q ss_pred eCCC--Ce---EEEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEe-ecCceeeeeeccccCCCceeccCccccCCCCe
Q 000731 103 SVDG--NA---TEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMT-HDWDLLYENPLEELAEGFDVHEPELSSSFSFK 176 (1325)
Q Consensus 103 ~~~~--~~---~e~vg~~~~~I~~~awSPDG~~LA~~s~dgtV~l~s-~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i 176 (1325)
.... .+ +..--.|.+.|.++-|+---+++.+.|.|..+.-.. +...-+...
T Consensus 96 s~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y----------------------- 152 (404)
T KOG1409|consen 96 ALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGY----------------------- 152 (404)
T ss_pred EhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccce-----------------------
Confidence 7643 11 223345788899999999999999999998774322 111111111
Q ss_pred EEEEEecCCcEEE---EeeccccccCCCCEEEEEECCCCceeeeecCCCCceeEEEEccCCCeEEEEecCCCCCCCCeEE
Q 000731 177 SPISWRGDGKYFA---TLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIV 253 (1325)
Q Consensus 177 ~~isWspDG~~lA---tvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~~~v~~lawsPdG~~IAs~~~d~~~~~~~~V~ 253 (1325)
.-.+|--+-++.+ .++-.. +.--..|+... .-.+..+..+|.+.+.+++|-|-..++-|+..| +.|.
T Consensus 153 ~~~~~~t~~~~d~~~~fvGd~~---gqvt~lr~~~~-~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d------~~vi 222 (404)
T KOG1409|consen 153 NFETPASALQFDALYAFVGDHS---GQITMLKLEQN-GCQLITTFNGHTGEVTCLKWDPGQRLLFSGASD------HSVI 222 (404)
T ss_pred EeeccCCCCceeeEEEEecccc---cceEEEEEeec-CCceEEEEcCcccceEEEEEcCCCcEEEecccc------CceE
Confidence 1122222222222 122111 11123455544 667888899999999999999999999999875 6799
Q ss_pred EEeCCCceEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCC
Q 000731 254 FYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNN 307 (1325)
Q Consensus 254 ~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~n~ 307 (1325)
.|+.-|.+-..+.+.++ ...|..+..-+--+.|.++..|+ .|-+|++++.
T Consensus 223 ~wdigg~~g~~~el~gh-~~kV~~l~~~~~t~~l~S~~edg---~i~~w~mn~~ 272 (404)
T KOG1409|consen 223 MWDIGGRKGTAYELQGH-NDKVQALSYAQHTRQLISCGEDG---GIVVWNMNVK 272 (404)
T ss_pred EEeccCCcceeeeeccc-hhhhhhhhhhhhheeeeeccCCC---eEEEEeccce
Confidence 99976654433444433 35678887777788899999998 8999999863
No 292
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=97.89 E-value=0.0021 Score=71.65 Aligned_cols=199 Identities=12% Similarity=0.049 Sum_probs=103.5
Q ss_pred CCCCEEEEEEccCCCEEEEEECCCcEEEEeCCCCeEE-------EeceecCcEEEEEEcCCC------CeEEEEeCCccE
Q 000731 74 PGDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATE-------VVGRVEGGVRFISPSPDG------DLLGVTTGFGQI 140 (1325)
Q Consensus 74 ~~~~V~~v~~spdg~~La~as~dG~I~lw~~~~~~~e-------~vg~~~~~I~~~awSPDG------~~LA~~s~dgtV 140 (1325)
|...-.-++||||+..||.+.+.|+|.++|+.+..+- ..|.....|..+.|-+-- ..|.+.+-+|.+
T Consensus 42 ~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L 121 (282)
T PF15492_consen 42 PNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQL 121 (282)
T ss_pred CCchheEEEECCCCcEEEEEcCCCeEEEEecccceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEecccee
Confidence 3457789999999999999999999999999875432 223334556666664321 122222333333
Q ss_pred EEEeecCceeeeeeccccC--CCceeccCccccC-CCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeee
Q 000731 141 LVMTHDWDLLYENPLEELA--EGFDVHEPELSSS-FSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQAS 217 (1325)
Q Consensus 141 ~l~s~~~d~~~e~~l~~~~--~~~~Vs~tqf~~~-~~~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t 217 (1325)
+- +-+ ...+.. ...+ .-+|..| ..+|.++.|.|.-+.|. |++.... . +|.-.+.
T Consensus 122 ~S----y~v----s~gt~q~y~e~h--sfsf~~~yp~Gi~~~vy~p~h~LLl-VgG~~~~--~----------~~~s~a~ 178 (282)
T PF15492_consen 122 RS----YLV----SVGTNQGYQENH--SFSFSSHYPHGINSAVYHPKHRLLL-VGGCEQN--Q----------DGMSKAS 178 (282)
T ss_pred ee----EEE----EcccCCcceeeE--EEEecccCCCceeEEEEcCCCCEEE-EeccCCC--C----------Ccccccc
Confidence 11 110 000000 0000 0012122 35789999999989888 7764311 1 1110000
Q ss_pred ecCCCCceeEEEE-----ccCCCeEEEEecCCCCCCCCeEEEEeCCCceEEEEEeccCCCCcEEEEEEccCCCeeEEEEc
Q 000731 218 SELKAFMGAVLEW-----MPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVR 292 (1325)
Q Consensus 218 ~e~~~~~v~~law-----sPdG~~IAs~~~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~ 292 (1325)
..|+ -+| +|-.+.+.+..++-+ ....+-.||..-. -+-|.........|..++.||||+.||+...
T Consensus 179 ---~~GL---taWRiL~~~Pyyk~v~~~~~~~~-~~~~~~~~~~~~~--~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~ 249 (282)
T PF15492_consen 179 ---SCGL---TAWRILSDSPYYKQVTSSEDDIT-ASSKRRGLLRIPS--FKFFSRQGQEQDGIFKMSLSPDGSLLACIHF 249 (282)
T ss_pred ---ccCc---eEEEEcCCCCcEEEccccCcccc-ccccccceeeccc--eeeeeccccCCCceEEEEECCCCCEEEEEEc
Confidence 1111 233 233333332221100 0000112222110 0111111223467999999999999999999
Q ss_pred cCCCCeEEEEEeeCC
Q 000731 293 FEEYDSVKICFFSNN 307 (1325)
Q Consensus 293 d~~~~~VqLW~~~n~ 307 (1325)
+| .|-||++-+.
T Consensus 250 sG---~lsLW~iPsL 261 (282)
T PF15492_consen 250 SG---SLSLWEIPSL 261 (282)
T ss_pred CC---eEEEEecCcc
Confidence 99 9999999763
No 293
>PLN03218 maturation of RBCL 1; Provisional
Probab=97.87 E-value=0.0069 Score=81.41 Aligned_cols=29 Identities=14% Similarity=0.283 Sum_probs=22.8
Q ss_pred chhhhHHHHHHHHhcccHHHHHHH---Hhhcc
Q 000731 705 PRKLVLTSIVNALIQGRFRDALVM---VRRHR 733 (1325)
Q Consensus 705 PR~lvL~~i~~~l~~~~y~~Af~~---~R~hR 733 (1325)
+.+..+..+..+++.+++.+|+.+ |++..
T Consensus 369 ~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~g 400 (1060)
T PLN03218 369 KSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRG 400 (1060)
T ss_pred CchHHHHHHHHHHHCcCHHHHHHHHHHHHhCC
Confidence 477888889999999999999766 55444
No 294
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=97.86 E-value=0.00017 Score=79.90 Aligned_cols=216 Identities=18% Similarity=0.197 Sum_probs=133.4
Q ss_pred CCCEEEEEEccCCCEEEEEECCCcEEEEeCCCCe-EE-----Eece------------ecCcEEEEEEcCCCCe--EEEE
Q 000731 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNA-TE-----VVGR------------VEGGVRFISPSPDGDL--LGVT 134 (1325)
Q Consensus 75 ~~~V~~v~~spdg~~La~as~dG~I~lw~~~~~~-~e-----~vg~------------~~~~I~~~awSPDG~~--LA~~ 134 (1325)
.+.|++|.|--.|.+|++|-.+|.|.++..+... +| .+.+ +...|+++.|--|+.+ ....
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 4689999999999999999999999999765311 11 0111 2456899999877653 5667
Q ss_pred eCCccEEEEe---ecCceeeeeeccccC---CCceec------cCccc----------------cCCCCeEEEEEecCCc
Q 000731 135 TGFGQILVMT---HDWDLLYENPLEELA---EGFDVH------EPELS----------------SSFSFKSPISWRGDGK 186 (1325)
Q Consensus 135 s~dgtV~l~s---~~~d~~~e~~l~~~~---~~~~Vs------~tqf~----------------~~~~~i~~isWspDG~ 186 (1325)
+.|.||++|. +.-.++.+-.+...- .+++++ +.+.. .|.-.+.+|++..|-+
T Consensus 106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~e 185 (460)
T COG5170 106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKE 185 (460)
T ss_pred cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchh
Confidence 8899999994 333333333322111 122332 11211 4556788999999999
Q ss_pred EEEEeeccccccCCCCEEEEEECC--CCceee-eecCCC-----CceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeCC
Q 000731 187 YFATLSEFCNSSKLHKRLKVWERD--SGTLQA-SSELKA-----FMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERN 258 (1325)
Q Consensus 187 ~lAtvss~d~~~~~d~~irVWd~~--~G~l~~-t~e~~~-----~~v~~lawsPdG~~IAs~~~d~~~~~~~~V~~~e~n 258 (1325)
++. ++ .+=+|-+|+.+ +|..-- --.|+. ..+++--|+|.-..+-.-+.. ++.|++.+.-
T Consensus 186 t~l-Sa-------DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsS-----kG~Ikl~DlR 252 (460)
T COG5170 186 TLL-SA-------DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSS-----KGEIKLNDLR 252 (460)
T ss_pred eee-ec-------cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecC-----CCcEEehhhh
Confidence 998 43 24689999984 222111 112222 235777889976544322221 4678887621
Q ss_pred --Cc---eEEEEEeccC---------CCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCC
Q 000731 259 --GL---ERSSFDINEQ---------IDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNN 307 (1325)
Q Consensus 259 --Gl---~~~~f~l~~~---------~~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~n~ 307 (1325)
.+ ....|.+... ....|..+.||++|+++++.... +|+|||+++-
T Consensus 253 q~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyl----tvkiwDvnm~ 311 (460)
T COG5170 253 QSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYL----TVKIWDVNMA 311 (460)
T ss_pred hhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccc----eEEEEecccc
Confidence 11 0111211110 12468899999999999998766 6999999754
No 295
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.75 E-value=0.004 Score=74.33 Aligned_cols=246 Identities=13% Similarity=0.128 Sum_probs=126.1
Q ss_pred CCEEEEEEccCCCEEEEEECCCcEEEEeCCCCeEEEe---c-------ee--------cCcEEEEEEcCCCCeEEEEeCC
Q 000731 76 DSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATEVV---G-------RV--------EGGVRFISPSPDGDLLGVTTGF 137 (1325)
Q Consensus 76 ~~V~~v~~spdg~~La~as~dG~I~lw~~~~~~~e~v---g-------~~--------~~~I~~~awSPDG~~LA~~s~d 137 (1325)
..+....|||||+.+|.+. +++|.+++..++....+ | -- -+.-.++-|||||+.||...-|
T Consensus 43 ~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d 121 (353)
T PF00930_consen 43 PKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFD 121 (353)
T ss_dssp TTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE
T ss_pred cccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEEC
Confidence 4688899999999999886 68999999876533211 1 00 0112467899999999999654
Q ss_pred -ccEEEEeec-C----c--eeeeeeccccC-CC-ceec-------cC-----c----cccCCCCeEEEEEecCCcEEEEe
Q 000731 138 -GQILVMTHD-W----D--LLYENPLEELA-EG-FDVH-------EP-----E----LSSSFSFKSPISWRGDGKYFATL 191 (1325)
Q Consensus 138 -gtV~l~s~~-~----d--~~~e~~l~~~~-~~-~~Vs-------~t-----q----f~~~~~~i~~isWspDG~~lAtv 191 (1325)
..|..+... + . |.....-.+.. +. ..|. .. . +...+.-+..+.|++|++.|+ +
T Consensus 122 ~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~-~ 200 (353)
T PF00930_consen 122 EREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLW-V 200 (353)
T ss_dssp -TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEE-E
T ss_pred CcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEE-E
Confidence 344433211 0 0 01100000000 00 0010 00 0 113455688999999999554 3
Q ss_pred eccccccCCCCEEEEEECCCCceeeee-cCCCCce---eEEEEc-cCCCeEEEEecCCCCCCCCeEEEEeCCCceEEEEE
Q 000731 192 SEFCNSSKLHKRLKVWERDSGTLQASS-ELKAFMG---AVLEWM-PSGANIAAVYDRKSENKCPSIVFYERNGLERSSFD 266 (1325)
Q Consensus 192 ss~d~~~~~d~~irVWd~~~G~l~~t~-e~~~~~v---~~laws-PdG~~IAs~~~d~~~~~~~~V~~~e~nGl~~~~f~ 266 (1325)
...+-. .....+.++|..+|...... +..++++ ....|. |+|..+.-.+...+ -..|-+++.+|.....
T Consensus 201 ~~~nR~-q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G---~~hly~~~~~~~~~~~-- 274 (353)
T PF00930_consen 201 QWLNRD-QNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDG---YRHLYLYDLDGGKPRQ-- 274 (353)
T ss_dssp EEEETT-STEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTS---SEEEEEEETTSSEEEE--
T ss_pred EEcccC-CCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCC---CcEEEEEcccccceec--
Confidence 332210 12245677788777664432 2344444 356665 88887766555221 3457777777654331
Q ss_pred eccCCCCcEE-EEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeEEEeEEEEe-cCCc--EEEEEccCCCc
Q 000731 267 INEQIDSTVE-LLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYL-RRDG--IRFMWHPTKPL 333 (1325)
Q Consensus 267 l~~~~~~~V~-~laWSpDg~~LAs~~~d~~~~~VqLW~~~n~~wylkqel~~~-~~~~--~~v~Wsp~~~~ 333 (1325)
|. .+.-.|. -+.|+++++.|...+....-..-+||.++-. -..++..- .... ..+.|||++..
T Consensus 275 lT-~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~---~~~~~~~LT~~~~~~~~~~~Spdg~y 341 (353)
T PF00930_consen 275 LT-SGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLD---SGGEPKCLTCEDGDHYSASFSPDGKY 341 (353)
T ss_dssp SS--SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETT---ETTEEEESSTTSSTTEEEEE-TTSSE
T ss_pred cc-cCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeC---CCCCeEeccCCCCCceEEEECCCCCE
Confidence 22 2334564 5889999887765554321112455555422 00112111 1122 46777777665
No 296
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=97.72 E-value=0.0037 Score=76.88 Aligned_cols=151 Identities=17% Similarity=0.199 Sum_probs=99.3
Q ss_pred eEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeecCCCCceeEEEEccC------CC------eEEEEecC
Q 000731 176 KSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPS------GA------NIAAVYDR 243 (1325)
Q Consensus 176 i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~~~v~~lawsPd------G~------~IAs~~~d 243 (1325)
...+.|+|.| .|| -++. ..|-|-|..+-+++++.+.|...|..|-|.|- +. +||++..
T Consensus 18 ~~A~Dw~~~G-LiA-ygsh-------slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~- 87 (1062)
T KOG1912|consen 18 RNAADWSPSG-LIA-YGSH-------SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADI- 87 (1062)
T ss_pred ccccccCccc-eEE-EecC-------ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccc-
Confidence 5778999988 677 4442 57888888799999999999999999999873 22 4666654
Q ss_pred CCCCCCCeEEEEeCC-CceEEEEEeccCCCCcEEEEEEc---cCC-CeeEEEEccCCCCeEEEEEeeCCeeEEEeEEEEe
Q 000731 244 KSENKCPSIVFYERN-GLERSSFDINEQIDSTVELLKWN---CMS-DLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYL 318 (1325)
Q Consensus 244 ~~~~~~~~V~~~e~n-Gl~~~~f~l~~~~~~~V~~laWS---pDg-~~LAs~~~d~~~~~VqLW~~~n~~wylkqel~~~ 318 (1325)
.+.|.+||-- +-..- .+ .++...|.+++|= +|+ .+|+.-.... +|-||++.++.-+-|+...
T Consensus 88 -----~GrIil~d~~~~s~~~--~l-~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss---~lvLwntdtG~k~Wk~~ys-- 154 (1062)
T KOG1912|consen 88 -----SGRIILVDFVLASVIN--WL-SHSNDSVQDLCWVPARDDSRDVLLAIHGSS---TLVLWNTDTGEKFWKYDYS-- 154 (1062)
T ss_pred -----cCcEEEEEehhhhhhh--hh-cCCCcchhheeeeeccCcchheeEEecCCc---EEEEEEccCCceeeccccC--
Confidence 3678889832 11111 11 2234456666664 577 5666655544 8999987665433343321
Q ss_pred cCCc-EEEEEccCCCcEEEEEecCCcEEEEEEE
Q 000731 319 RRDG-IRFMWHPTKPLQLICWTLDGQITTYNFI 350 (1325)
Q Consensus 319 ~~~~-~~v~Wsp~~~~~L~~~~~~g~~~~~~~~ 350 (1325)
... .++.++|=.+..+.+.+..|.+...++.
T Consensus 155 -~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l 186 (1062)
T KOG1912|consen 155 -HEILSCFRVDPFDSRHFCVLGSKGFVLSCKDL 186 (1062)
T ss_pred -CcceeeeeeCCCCcceEEEEccCceEEEEecc
Confidence 233 5588999888888888777766655443
No 297
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.68 E-value=0.0017 Score=74.72 Aligned_cols=187 Identities=12% Similarity=0.061 Sum_probs=128.7
Q ss_pred CCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEE-EEECC--CcEEEEeCCCCe
Q 000731 32 QNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALI-VGTSS--GLLLLHSVDGNA 108 (1325)
Q Consensus 32 ~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~V~~v~~spdg~~La-~as~d--G~I~lw~~~~~~ 108 (1325)
.+.|..|-+++.+..|+. -.+...... +.. +..++.+..|.=+|....++ .|+.- ..+.+||+++.+
T Consensus 115 dg~Litc~~sG~l~~~~~--k~~d~hss~------l~~--la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~ 184 (412)
T KOG3881|consen 115 DGTLITCVSSGNLQVRHD--KSGDLHSSK------LIK--LATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSK 184 (412)
T ss_pred CCEEEEEecCCcEEEEec--cCCcccccc------cee--eecCCceeeeccCCCCCceEecCchhcccceeeeecccce
Confidence 356666666777888887 222211000 111 11145677777777766554 46666 678999998752
Q ss_pred -E-E--E-----ec-eecCcEEEEEEcCC--CCeEEEEeCCccEEEEee--cCceeeeeeccccCCCceeccCccccCCC
Q 000731 109 -T-E--V-----VG-RVEGGVRFISPSPD--GDLLGVTTGFGQILVMTH--DWDLLYENPLEELAEGFDVHEPELSSSFS 174 (1325)
Q Consensus 109 -~-e--~-----vg-~~~~~I~~~awSPD--G~~LA~~s~dgtV~l~s~--~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~ 174 (1325)
+ + . +| .+.-+++.+.|=|+ ...+|++|.-+.|++++. .-.|+.++.+. ..
T Consensus 185 qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~----------------E~ 248 (412)
T KOG3881|consen 185 QIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFL----------------EN 248 (412)
T ss_pred eeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccc----------------cC
Confidence 1 1 1 11 23456778999888 899999999999987641 11222222221 24
Q ss_pred CeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeee-ecCCCCceeEEEEccCCCeEEEEecCCCCCCCCeEE
Q 000731 175 FKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQAS-SELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIV 253 (1325)
Q Consensus 175 ~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t-~e~~~~~v~~lawsPdG~~IAs~~~d~~~~~~~~V~ 253 (1325)
.+.+++--|+|.++. ++. ..+.+..+|.+.|.++-. +.+..|.+.+|--.|.+.+||+++-| .-|+
T Consensus 249 ~is~~~l~p~gn~Iy-~gn------~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLD------RyvR 315 (412)
T KOG3881|consen 249 PISSTGLTPSGNFIY-TGN------TKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLD------RYVR 315 (412)
T ss_pred cceeeeecCCCcEEE-Eec------ccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccc------eeEE
Confidence 678999999999987 552 247899999989998887 78899999999999999999999986 5699
Q ss_pred EEeC
Q 000731 254 FYER 257 (1325)
Q Consensus 254 ~~e~ 257 (1325)
+||.
T Consensus 316 IhD~ 319 (412)
T KOG3881|consen 316 IHDI 319 (412)
T ss_pred Eeec
Confidence 9984
No 298
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=97.67 E-value=0.00036 Score=81.74 Aligned_cols=287 Identities=11% Similarity=-0.022 Sum_probs=163.8
Q ss_pred CCCEEEEEEccCCCEEEEEECCCcEEEEeCCCCe--EEEeceecCcEEEEEEcCC--CCeEEEEeCCccEEEEeecCcee
Q 000731 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNA--TEVVGRVEGGVRFISPSPD--GDLLGVTTGFGQILVMTHDWDLL 150 (1325)
Q Consensus 75 ~~~V~~v~~spdg~~La~as~dG~I~lw~~~~~~--~e~vg~~~~~I~~~awSPD--G~~LA~~s~dgtV~l~s~~~d~~ 150 (1325)
.+.|..|.|...|..||++|.|-.|.+||...+. +...+.|...|-...|=|. -..|++.+.||+|.+-... .
T Consensus 142 ~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~---~ 218 (559)
T KOG1334|consen 142 KGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEIL---E 218 (559)
T ss_pred CCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeec---c
Confidence 4799999999999999999999999999987654 3444556777777777654 4789999999999763211 0
Q ss_pred eeeeccccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceee---eecCCCC---c
Q 000731 151 YENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQA---SSELKAF---M 224 (1325)
Q Consensus 151 ~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~---t~e~~~~---~ 224 (1325)
++..-.+. ....|.+.+..++--|+..+-.-++ ++|+.++=.|+..+..-. +-+.... .
T Consensus 219 t~~~e~t~---------rl~~h~g~vhklav~p~sp~~f~S~------geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~ 283 (559)
T KOG1334|consen 219 TGYVENTK---------RLAPHEGPVHKLAVEPDSPKPFLSC------GEDAVVFHIDLRQDVPAEKFVCREADEKERVG 283 (559)
T ss_pred ccceecce---------ecccccCccceeeecCCCCCccccc------ccccceeeeeeccCCccceeeeeccCCcccee
Confidence 11110000 0113456677888888775433122 356788877775553322 2222222 2
Q ss_pred eeEEEEccCCC-eEEEEecCCCCCCCCeEEEEeC--------CCceEEEEEec---cCCCCcEEEEEEccC-CCeeEEEE
Q 000731 225 GAVLEWMPSGA-NIAAVYDRKSENKCPSIVFYER--------NGLERSSFDIN---EQIDSTVELLKWNCM-SDLLAAVV 291 (1325)
Q Consensus 225 v~~lawsPdG~-~IAs~~~d~~~~~~~~V~~~e~--------nGl~~~~f~l~---~~~~~~V~~laWSpD-g~~LAs~~ 291 (1325)
..+|+-.|... .+|+++.| .-+++++. ||.. ..|.-+ ......|..+++|.| |++||+..
T Consensus 284 L~~Ia~~P~nt~~faVgG~d------qf~RvYD~R~~~~e~~n~~~-~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYn 356 (559)
T KOG1334|consen 284 LYTIAVDPRNTNEFAVGGSD------QFARVYDQRRIDKEENNGVL-DKFCPHHLVEDDPVNITGLVYSHDGSELLASYN 356 (559)
T ss_pred eeeEecCCCCccccccCChh------hhhhhhcccchhhccccchh-hhcCCccccccCcccceeEEecCCccceeeeec
Confidence 37889999765 78888765 23555552 2311 123211 112346999999955 55666665
Q ss_pred ccCCCCeEEEEEeeCCe------------eEEEeEEEEecCCcE--EE-EEccCCCcEEEEEecCCcEEEEEEEEeeeeC
Q 000731 292 RFEEYDSVKICFFSNNH------------WYLKYEIRYLRRDGI--RF-MWHPTKPLQLICWTLDGQITTYNFIWTTAVM 356 (1325)
Q Consensus 292 ~d~~~~~VqLW~~~n~~------------wylkqel~~~~~~~~--~v-~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~ 356 (1325)
... |.|++. ++. -|.|+....|.+..+ .+ -|-|.
T Consensus 357 De~----IYLF~~-~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPr-------------------------- 405 (559)
T KOG1334|consen 357 DED----IYLFNK-SMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPR-------------------------- 405 (559)
T ss_pred ccc----eEEecc-ccccCCCCCCCcchhhccchhhcccccccccceeeeccCc--------------------------
Confidence 544 888743 221 122222222221110 01 12221
Q ss_pred CCeeEEEEeCCEEEEeecCCcCCCCCceeeeecC-CCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCC
Q 000731 357 ENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKF-PTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPA 424 (1325)
Q Consensus 357 d~~~v~viDG~~l~lt~l~~~~vPpPm~~~~l~~-~~~V~~VaFSpdg~~~~LAs~s~Dgti~lw~~~~ 424 (1325)
..-+|...|-.+|-+|.=+.+-+-. -++. ..-|+|+-=+|-- ..||+.+-|..|+||..-+
T Consensus 406 sEyVvSGSDCGhIFiW~K~t~eii~-----~MegDr~VVNCLEpHP~~--PvLAsSGid~DVKIWTP~~ 467 (559)
T KOG1334|consen 406 SEYVVSGSDCGHIFIWDKKTGEIIR-----FMEGDRHVVNCLEPHPHL--PVLASSGIDHDVKIWTPLT 467 (559)
T ss_pred cceEEecCccceEEEEecchhHHHH-----HhhcccceEeccCCCCCC--chhhccCCccceeeecCCc
Confidence 1222333444555566543321100 1111 2246787766665 6899999999999998744
No 299
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=97.66 E-value=0.004 Score=68.47 Aligned_cols=226 Identities=10% Similarity=-0.035 Sum_probs=129.6
Q ss_pred CEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEEEeCCCCeEEEe
Q 000731 33 NRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATEVV 112 (1325)
Q Consensus 33 ~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~V~~v~~spdg~~La~as~dG~I~lw~~~~~~~e~v 112 (1325)
++|+.+...++.-.|.. .++++...+.... ..+..+. ..+ +. ..--+-+++.|.|+++..++++.....
T Consensus 85 ~~la~gG~~g~fd~~~~--~tn~~h~~~cd~s--nn~v~~~--~r~-cd----~~~~~~i~sndht~k~~~~~~~s~~~~ 153 (344)
T KOG4532|consen 85 VTLADGGASGQFDLFAC--NTNDGHLYQCDVS--NNDVTLV--KRY-CD----LKFPLNIASNDHTGKTMVVSGDSNKFA 153 (344)
T ss_pred cEEEeccccceeeeecc--cCcccceeeeccc--ccchhhh--hhh-cc----cccceeeccCCcceeEEEEecCcccce
Confidence 44555556666777777 4565544432111 1111000 011 11 112355778899999988876544322
Q ss_pred ceec-CcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeeeccccCCCceeccCccccCCCCeEEEEEecCCcEEEEe
Q 000731 113 GRVE-GGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATL 191 (1325)
Q Consensus 113 g~~~-~~I~~~awSPDG~~LA~~s~dgtV~l~s~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtv 191 (1325)
-+.. -.+++++.|||++++++++....|-.+..+-+. +..... ...+..+.-.+.+|+.....|| +
T Consensus 154 ~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~s--ey~~~~----------~~a~t~D~gF~~S~s~~~~~FA-v 220 (344)
T KOG4532|consen 154 VHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDES--EYIENI----------YEAPTSDHGFYNSFSENDLQFA-V 220 (344)
T ss_pred eeccccceeeeEEcCCCceEEEecCCCcceEEEeCCcc--ceeeee----------EecccCCCceeeeeccCcceEE-E
Confidence 2222 348899999999999999999888776543221 111110 0001224457899999999999 7
Q ss_pred eccccccCCCCEEEEEECCC-Cceeee----ecCCCCceeEEEEccCCCe--EEEEecCCCCCCCCeEEEEe-CCCceEE
Q 000731 192 SEFCNSSKLHKRLKVWERDS-GTLQAS----SELKAFMGAVLEWMPSGAN--IAAVYDRKSENKCPSIVFYE-RNGLERS 263 (1325)
Q Consensus 192 ss~d~~~~~d~~irVWd~~~-G~l~~t----~e~~~~~v~~lawsPdG~~--IAs~~~d~~~~~~~~V~~~e-~nGl~~~ 263 (1325)
++ .|+++.|||.+. +.+... -..|.|.+..+-|+|-|.+ |--+.. -..+.+.| ||+..+.
T Consensus 221 ~~------Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEh------fs~~hv~D~R~~~~~q 288 (344)
T KOG4532|consen 221 VF------QDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEH------FSRVHVVDTRNYVNHQ 288 (344)
T ss_pred Ee------cCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecC------cceEEEEEcccCceee
Confidence 74 468999999753 333322 2347899999999997653 222221 13466666 6776665
Q ss_pred EEEec-----cCCCCcEEEEEEccCCCeeEEEEccC
Q 000731 264 SFDIN-----EQIDSTVELLKWNCMSDLLAAVVRFE 294 (1325)
Q Consensus 264 ~f~l~-----~~~~~~V~~laWSpDg~~LAs~~~d~ 294 (1325)
-..++ .|.+..|..-.|+.+++-.-+..++.
T Consensus 289 ~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~~ 324 (344)
T KOG4532|consen 289 VIVIPDDVERKHNTQHIFGTNFNNENESNDVKNELQ 324 (344)
T ss_pred EEecCccccccccccccccccccCCCcccccccchh
Confidence 43332 12223456666666666555555443
No 300
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=97.60 E-value=0.00058 Score=78.72 Aligned_cols=120 Identities=21% Similarity=0.239 Sum_probs=81.9
Q ss_pred CEEEEEEccCCCEEEEEECCCcEEE---EeCCCCeE-EEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeee
Q 000731 77 SITAFDYLMEKEALIVGTSSGLLLL---HSVDGNAT-EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYE 152 (1325)
Q Consensus 77 ~V~~v~~spdg~~La~as~dG~I~l---w~~~~~~~-e~vg~~~~~I~~~awSPDG~~LA~~s~dgtV~l~s~~~d~~~e 152 (1325)
...++.|..+.....++-.-|++.. |+...+.. .++|| -.-+..++||||++.|.++..|+.|++- |-|..
T Consensus 109 ~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~~~lGh-vSml~dVavS~D~~~IitaDRDEkIRvs---~ypa~- 183 (390)
T KOG3914|consen 109 RPTAISFIREDTSVLVADKAGDVYSFDILSADSGRCEPILGH-VSMLLDVAVSPDDQFIITADRDEKIRVS---RYPAT- 183 (390)
T ss_pred CcceeeeeeccceEEEEeecCCceeeeeecccccCcchhhhh-hhhhheeeecCCCCEEEEecCCceEEEE---ecCcc-
Confidence 4566667777666666666666555 55453444 47886 6779999999999999999999999763 22211
Q ss_pred eeccccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeec
Q 000731 153 NPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSE 219 (1325)
Q Consensus 153 ~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e 219 (1325)
..+ ++-+.||...|.+++-- |++.|+ ++ +||+++|+||..+|+++.+++
T Consensus 184 f~I----------esfclGH~eFVS~isl~-~~~~Ll-S~------sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 184 FVI----------ESFCLGHKEFVSTISLT-DNYLLL-SG------SGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred cch----------hhhccccHhheeeeeec-cCceee-ec------CCCCcEEEEecccCCcccccc
Confidence 001 11222566666777755 566677 44 468999999999999987764
No 301
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=97.60 E-value=0.00068 Score=79.53 Aligned_cols=253 Identities=12% Similarity=0.099 Sum_probs=155.5
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEcc--CCCEEEEEECCCcE
Q 000731 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLM--EKEALIVGTSSGLL 99 (1325)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~V~~v~~sp--dg~~La~as~dG~I 99 (1325)
-+..+-|...++.|.++|+|.+++.||- ..... +...+++ | ...|---.|.| +.+.|++.+.||.|
T Consensus 144 cVntV~FN~~Gd~l~SgSDD~~vv~WdW--~~~~~---~l~f~SG---H----~~NvfQaKFiP~s~d~ti~~~s~dgqv 211 (559)
T KOG1334|consen 144 CVNTVHFNQRGDVLASGSDDLQVVVWDW--VSGSP---KLSFESG---H----CNNVFQAKFIPFSGDRTIVTSSRDGQV 211 (559)
T ss_pred ccceeeecccCceeeccCccceEEeehh--hccCc---ccccccc---c----ccchhhhhccCCCCCcCceeccccCce
Confidence 5677889999999999999999999997 33332 1111222 1 11233333555 34788999999999
Q ss_pred EEEeCC-CCeE---EEeceecCcEEEEEEcCCC-CeEEEEeCCccEEEEeecCceeee-----------------eeccc
Q 000731 100 LLHSVD-GNAT---EVVGRVEGGVRFISPSPDG-DLLGVTTGFGQILVMTHDWDLLYE-----------------NPLEE 157 (1325)
Q Consensus 100 ~lw~~~-~~~~---e~vg~~~~~I~~~awSPDG-~~LA~~s~dgtV~l~s~~~d~~~e-----------------~~l~~ 157 (1325)
++=.+. ++.+ ..++.|.+.|.-++.-|+. .-+.++++|+.|.-.+..-+..++ +..++
T Consensus 212 r~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P 291 (559)
T KOG1334|consen 212 RVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDP 291 (559)
T ss_pred eeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCC
Confidence 986543 3433 3678889999999998885 457778889887643321111111 01100
Q ss_pred cCCCc-eec-cCccc---------------------c------CCCCeEEEEEecCC-cEEEEeeccccccCCCCEEEEE
Q 000731 158 LAEGF-DVH-EPELS---------------------S------SFSFKSPISWRGDG-KYFATLSEFCNSSKLHKRLKVW 207 (1325)
Q Consensus 158 ~~~~~-~Vs-~tqf~---------------------~------~~~~i~~isWspDG-~~lAtvss~d~~~~~d~~irVW 207 (1325)
..... .|. ..||. + ..-.|+++++|.|| .++| |.. |-.|.++
T Consensus 292 ~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLa--SYn------De~IYLF 363 (559)
T KOG1334|consen 292 RNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLA--SYN------DEDIYLF 363 (559)
T ss_pred CCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceee--eec------ccceEEe
Confidence 00000 010 11222 1 12458999999665 5665 332 4578888
Q ss_pred ECC--CCc----------eeee-ecCCCC--ceeEE-EEccCCCeEEEEecCCCCCCCCeEEEEeCCCceEEEEEeccCC
Q 000731 208 ERD--SGT----------LQAS-SELKAF--MGAVL-EWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQI 271 (1325)
Q Consensus 208 d~~--~G~----------l~~t-~e~~~~--~v~~l-awsPdG~~IAs~~~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~ 271 (1325)
+.. .|. .... ..+|.. .|..+ =|-|..+++.||++ ++.|-||++++-.+-.| +.+ .
T Consensus 364 ~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSD------CGhIFiW~K~t~eii~~-Meg-D 435 (559)
T KOG1334|consen 364 NKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSD------CGHIFIWDKKTGEIIRF-MEG-D 435 (559)
T ss_pred ccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCc------cceEEEEecchhHHHHH-hhc-c
Confidence 663 341 1111 223332 23333 36899999999998 67899999886443221 112 2
Q ss_pred CCcEEEEEEccCCCeeEEEEccCCCCeEEEEEee
Q 000731 272 DSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFS 305 (1325)
Q Consensus 272 ~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~ 305 (1325)
...|++|.=.|==-+||+.+-|. -||||+-.
T Consensus 436 r~VVNCLEpHP~~PvLAsSGid~---DVKIWTP~ 466 (559)
T KOG1334|consen 436 RHVVNCLEPHPHLPVLASSGIDH---DVKIWTPL 466 (559)
T ss_pred cceEeccCCCCCCchhhccCCcc---ceeeecCC
Confidence 23688898888888999999887 79999974
No 302
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=97.59 E-value=0.00097 Score=74.12 Aligned_cols=297 Identities=12% Similarity=0.155 Sum_probs=155.7
Q ss_pred cCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeeeccccCCCceeccCccccCC------------CCeEEEEEec
Q 000731 116 EGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSF------------SFKSPISWRG 183 (1325)
Q Consensus 116 ~~~I~~~awSPDG~~LA~~s~dgtV~l~s~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~------------~~i~~isWsp 183 (1325)
.+-|+++.|-.-|.+||+|..-|.|.++.+.-. .+. +.++. |.||+|+ ..|..|.|-.
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s--~~c------eykf~--teFQshe~EFDYLkSleieEKin~I~w~~ 95 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKS--YGC------EYKFF--TEFQSHELEFDYLKSLEIEEKINAIEWFD 95 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccc--ccc------chhhh--hhhcccccchhhhhhccHHHHhhheeeec
Confidence 356999999999999998887799988754311 110 12222 2233222 3578899988
Q ss_pred CCc--EEEEeeccccccCCCCEEEEEECCCCceeeeecCCCCceeEEEEccCCCeEEEEecCCC-CC--CCCeEEEEeCC
Q 000731 184 DGK--YFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKS-EN--KCPSIVFYERN 258 (1325)
Q Consensus 184 DG~--~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~~~v~~lawsPdG~~IAs~~~d~~-~~--~~~~V~~~e~n 258 (1325)
|+. .|. ++ +.+++||+|-..+..+.-..+ ..+..++. +|-|--+.|.+.-.- +- ..-.|....+
T Consensus 96 ~t~r~hFL-ls------tNdktiKlWKiyeknlk~va~--nnls~~~~-~~~~g~~~s~~~l~lprls~hd~iiaa~p~- 164 (460)
T COG5170 96 DTGRNHFL-LS------TNDKTIKLWKIYEKNLKVVAE--NNLSDSFH-SPMGGPLTSTKELLLPRLSEHDEIIAAKPC- 164 (460)
T ss_pred CCCcceEE-Ee------cCCceeeeeeeecccchhhhc--cccccccc-cccCCCcCCHHHhhcccccccceEEEeccc-
Confidence 775 233 34 357999999874443322222 11112222 232222222211000 00 0011111111
Q ss_pred CceEEEEEec-cCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCC-eeEEEeEEEEec----CCc-EEEEEccCC
Q 000731 259 GLERSSFDIN-EQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNN-HWYLKYEIRYLR----RDG-IRFMWHPTK 331 (1325)
Q Consensus 259 Gl~~~~f~l~-~~~~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~n~-~wylkqel~~~~----~~~-~~v~Wsp~~ 331 (1325)
.+. ..+...+++|+++.|-+.+.++..-+ |-||...-- +.+-.-.+.-+. ... ++..|||+.
T Consensus 165 -------rvyaNaH~yhiNSiS~NsD~et~lSaDdLr----INLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~ 233 (460)
T COG5170 165 -------RVYANAHPYHINSISFNSDKETLLSADDLR----INLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEM 233 (460)
T ss_pred -------eeccccceeEeeeeeecCchheeeecccee----eeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhH
Confidence 011 12345699999999999999886655 999997631 111111111110 123 677899998
Q ss_pred CcEEEEEecCCcEEEEEEEEeeeeCCCe--eEEEEeCCEEEEeecCCcCCCCCceeeeecCCCCEEEEEEecCCCCCEEE
Q 000731 332 PLQLICWTLDGQITTYNFIWTTAVMENS--TALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLA 409 (1325)
Q Consensus 332 ~~~L~~~~~~g~~~~~~~~~~~~~~d~~--~v~viDG~~l~lt~l~~~~vPpPm~~~~l~~~~~V~~VaFSpdg~~~~LA 409 (1325)
...++..+..|.+...+..-+.-++... ...-+||-.+ .++ -+.-+.|.++-||++| ..++
T Consensus 234 cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~--------------~ff-~eivsSISD~kFs~ng--ryIl 296 (460)
T COG5170 234 CNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDV--------------DFF-EEIVSSISDFKFSDNG--RYIL 296 (460)
T ss_pred cceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccc--------------hhH-HHHhhhhcceEEcCCC--cEEE
Confidence 8878877777877654433211111100 0011222110 000 0234678899999999 7777
Q ss_pred EEECCCcEEEEeCCCC-CccccccCCceeEeeecc------ccccCcE---EEEEEecCCeEEEEEecC
Q 000731 410 AILSDGCLCVVDLPAP-DMLEDLEGTEFVVEACIS------ETAFGSV---IHLIWLGSHLLLSVSHHG 468 (1325)
Q Consensus 410 s~s~Dgti~lw~~~~~-~~~~~~~g~~~~~~~~~~------~~~~~~v---~~l~~~~d~~lla~~~~~ 468 (1325)
+-+. .+|++|++.-. .++.+ +.+. +.. .-+.+.+ ..+.|+.|+.-+.++++.
T Consensus 297 sRdy-ltvkiwDvnm~k~pikT-----i~~h-~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~ 358 (460)
T COG5170 297 SRDY-LTVKIWDVNMAKNPIKT-----IPMH-CDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYS 358 (460)
T ss_pred Eecc-ceEEEEecccccCCcee-----echH-HHHHHHHHhhhhccceeeeEEEEecCCcccccccccc
Confidence 6544 49999998642 12211 1000 110 0122222 457899999988888774
No 303
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=97.46 E-value=0.006 Score=79.60 Aligned_cols=159 Identities=11% Similarity=-0.015 Sum_probs=121.7
Q ss_pred cccHHHh--hcCHHHHHHHHHHcCCC---cHHHHHHHHHHHhcChHHHHhhc-C--------CcHHHHHHHHHHHHHHhc
Q 000731 937 RYTIDLR--LQRFENALKHIVSMGDS---YHADCLNLMKKYAQLFPLGLKLI-T--------DPAKMEQVLEAWADHLSD 1002 (1325)
Q Consensus 937 ~~~Id~~--L~rye~Al~~l~~~g~~---~~d~ale~~~~~~~ly~~AL~L~-~--------d~~~~~~i~~~~a~~L~~ 1002 (1325)
...|++| .|++++|.+.|.++... -+...+..+.++ +.+++|++++ . |..-+..++ .-+..
T Consensus 364 ~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~-G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll----~a~~~ 438 (697)
T PLN03081 364 TALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNH-GRGTKAVEMFERMIAEGVAPNHVTFLAVL----SACRY 438 (697)
T ss_pred HHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCCCHHHHHHHH----HHHhc
Confidence 3467777 57899999999887421 256778888999 9999999998 1 222333344 55667
Q ss_pred cccHHHHHHHHHHcC----------CHHHHHHHHHHcCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHH
Q 000731 1003 VKCFEDAATTYFCCS----------SLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKI 1072 (1325)
Q Consensus 1003 ~~~~~eAa~~y~~ag----------~~ekAl~~y~~ag~W~~al~la~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i 1072 (1325)
.+..++|..+|.... -|.--+++|.++|++++|+.+....+..++. .....+...+...|+++.|..+
T Consensus 439 ~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~--~~~~~Ll~a~~~~g~~~~a~~~ 516 (697)
T PLN03081 439 SGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTV--NMWAALLTACRIHKNLELGRLA 516 (697)
T ss_pred CCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCH--HHHHHHHHHHHHcCCcHHHHHH
Confidence 899999999998763 2556789999999999999998887655443 3577888888889999999888
Q ss_pred HHHh-------cCCHHHHHHHHHHhcCHHHHHHHHHh
Q 000731 1073 ALDY-------CGDVTNGISLLIDARDWEEALRVAFM 1102 (1325)
Q Consensus 1073 ~~~y-------l~d~e~Av~~~~~~~~w~eA~rLa~~ 1102 (1325)
+.+. .+.+...+.+|++.++|++|.++...
T Consensus 517 ~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~ 553 (697)
T PLN03081 517 AEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVET 553 (697)
T ss_pred HHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHH
Confidence 7763 24577889999999999999987654
No 304
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=97.46 E-value=0.038 Score=72.20 Aligned_cols=158 Identities=15% Similarity=0.048 Sum_probs=106.9
Q ss_pred hhcCHHHHHHHHHHc---C--CC--cHHHHHHHHHHHhcChHHHHhhc-----CCcHHHHHHHHHHHHHHhccccHHHHH
Q 000731 943 RLQRFENALKHIVSM---G--DS--YHADCLNLMKKYAQLFPLGLKLI-----TDPAKMEQVLEAWADHLSDVKCFEDAA 1010 (1325)
Q Consensus 943 ~L~rye~Al~~l~~~---g--~~--~~d~ale~~~~~~~ly~~AL~L~-----~d~~~~~~i~~~~a~~L~~~~~~~eAa 1010 (1325)
..|++++|++.|.++ | ++ -+.-.+..+.+. +.+++|.+++ .+-..-..++....+-+...|++++|.
T Consensus 302 ~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~-g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~ 380 (697)
T PLN03081 302 LHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRL-ALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDAR 380 (697)
T ss_pred hCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-cchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHH
Confidence 357788888888765 2 11 134455566677 7788887776 111111123344445566678888888
Q ss_pred HHHHHcC-----CHHHHHHHHHHcCCHHHHHHHHhhc---CCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcCC---
Q 000731 1011 TTYFCCS-----SLEKAMKAYRASGNWSGVLTVAGLL---KLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCGD--- 1079 (1325)
Q Consensus 1011 ~~y~~ag-----~~ekAl~~y~~ag~W~~al~la~~l---~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~yl~d--- 1079 (1325)
.+|.... -|.-.+.+|.+.|++++|+.+-.++ +..++.. .+..+...+...|+.++|.++|..+..+
T Consensus 381 ~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~--T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~ 458 (697)
T PLN03081 381 NVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHV--TFLAVLSACRYSGLSEQGWEIFQSMSENHRI 458 (697)
T ss_pred HHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHH--HHHHHHHHHhcCCcHHHHHHHHHHHHHhcCC
Confidence 8888754 3456778888889988888776653 3334433 4667778888899999999998875432
Q ss_pred ------HHHHHHHHHHhcCHHHHHHHHHhc
Q 000731 1080 ------VTNGISLLIDARDWEEALRVAFMH 1103 (1325)
Q Consensus 1080 ------~e~Av~~~~~~~~w~eA~rLa~~~ 1103 (1325)
+.--|++|++++++++|..+..+-
T Consensus 459 ~p~~~~y~~li~~l~r~G~~~eA~~~~~~~ 488 (697)
T PLN03081 459 KPRAMHYACMIELLGREGLLDEAYAMIRRA 488 (697)
T ss_pred CCCccchHhHHHHHHhcCCHHHHHHHHHHC
Confidence 456789999999999998887653
No 305
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.45 E-value=0.0029 Score=78.99 Aligned_cols=140 Identities=17% Similarity=0.267 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHhcChHHHHhhc----CCcHHHHHHHHHHHHHHhccccHHHHHHHHHHcC---CHHHHHHHHHHcCCHHH
Q 000731 962 HADCLNLMKKYAQLFPLGLKLI----TDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCS---SLEKAMKAYRASGNWSG 1034 (1325)
Q Consensus 962 ~d~ale~~~~~~~ly~~AL~L~----~d~~~~~~i~~~~a~~L~~~~~~~eAa~~y~~ag---~~ekAl~~y~~ag~W~~ 1034 (1325)
.+.-++++.+. +||+.|+.|+ .|++..+.++++||+||..+|+|++|-..|.++= +...-+.-|..+...++
T Consensus 337 le~kL~iL~kK-~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~Vi~kfLdaq~Ikn 415 (933)
T KOG2114|consen 337 LETKLDILFKK-NLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSEVIKKFLDAQRIKN 415 (933)
T ss_pred HHHHHHHHHHh-hhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHHHHHHhcCHHHHHH
Confidence 35557788888 9999999998 5888999999999999999999999999998873 33334444444433333
Q ss_pred HHHHHhhc---CCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcC------CHHHHHHHHHHhcCHHHHHHHHHhcCC
Q 000731 1035 VLTVAGLL---KLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCG------DVTNGISLLIDARDWEEALRVAFMHRR 1105 (1325)
Q Consensus 1035 al~la~~l---~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~yl~------d~e~Av~~~~~~~~w~eA~rLa~~~~~ 1105 (1325)
+......| ++...+-..++..|=-.|....+..+ |.+.+. |++.|++.+.+.+..++|.+||.+++.
T Consensus 416 Lt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~e----fI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~~ 491 (933)
T KOG2114|consen 416 LTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTE----FISKCDKGEWFFDVETALEILRKSNYLDEAELLATKFKK 491 (933)
T ss_pred HHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHH----HHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHHhcc
Confidence 32222111 22222222333333333322222211 233233 699999999999999999999999886
Q ss_pred c
Q 000731 1106 E 1106 (1325)
Q Consensus 1106 ~ 1106 (1325)
.
T Consensus 492 h 492 (933)
T KOG2114|consen 492 H 492 (933)
T ss_pred C
Confidence 3
No 306
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=97.43 E-value=0.0013 Score=75.95 Aligned_cols=158 Identities=15% Similarity=0.073 Sum_probs=96.3
Q ss_pred CcEEEEEEcCCCCeEEEEeCCccEEEEeec-----CceeeeeeccccCCCceeccCccccCCCCeEEEEEecCCcEEEEe
Q 000731 117 GGVRFISPSPDGDLLGVTTGFGQILVMTHD-----WDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATL 191 (1325)
Q Consensus 117 ~~I~~~awSPDG~~LA~~s~dgtV~l~s~~-----~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtv 191 (1325)
.+++.+..||+|++||.++.+....+..-. +..+...++.. .-..+++-.+..... +
T Consensus 63 ~a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~-----------------~~~ai~~~~~~~sv~-v 124 (390)
T KOG3914|consen 63 LAPALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPK-----------------RPTAISFIREDTSVL-V 124 (390)
T ss_pred ccccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeeccc-----------------CcceeeeeeccceEE-E
Confidence 456677889999999999888775443211 11121122111 113455544444433 2
Q ss_pred eccccccCCCCEEEEEECCCCceeeeecCCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEEEe-CCCceEEEEEeccC
Q 000731 192 SEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYE-RNGLERSSFDINEQ 270 (1325)
Q Consensus 192 ss~d~~~~~d~~irVWd~~~G~l~~t~e~~~~~v~~lawsPdG~~IAs~~~d~~~~~~~~V~~~e-~nGl~~~~f~l~~~ 270 (1325)
.- .. +....+.+|+..+|.+..+ -+|-.++..|+|+||++.|.++.+|. .|++-+ .+--....|.+ .
T Consensus 125 ~d--ka-gD~~~~di~s~~~~~~~~~-lGhvSml~dVavS~D~~~IitaDRDE------kIRvs~ypa~f~Iesfcl--G 192 (390)
T KOG3914|consen 125 AD--KA-GDVYSFDILSADSGRCEPI-LGHVSMLLDVAVSPDDQFIITADRDE------KIRVSRYPATFVIESFCL--G 192 (390)
T ss_pred Ee--ec-CCceeeeeecccccCcchh-hhhhhhhheeeecCCCCEEEEecCCc------eEEEEecCcccchhhhcc--c
Confidence 21 11 3346788888755555443 34677789999999999999998864 465543 22111111222 3
Q ss_pred CCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCe
Q 000731 271 IDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNH 308 (1325)
Q Consensus 271 ~~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~n~~ 308 (1325)
|..-|..++--+ ++.|.+++.|+ +|++|+..++.
T Consensus 193 H~eFVS~isl~~-~~~LlS~sGD~---tlr~Wd~~sgk 226 (390)
T KOG3914|consen 193 HKEFVSTISLTD-NYLLLSGSGDK---TLRLWDITSGK 226 (390)
T ss_pred cHhheeeeeecc-CceeeecCCCC---cEEEEecccCC
Confidence 456688888765 45588999888 99999998764
No 307
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.39 E-value=0.02 Score=70.10 Aligned_cols=140 Identities=12% Similarity=0.089 Sum_probs=83.4
Q ss_pred CEEEEEEccCCCEEEEEECCCcEEEEeCCCCeEEEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeeecc
Q 000731 77 SITAFDYLMEKEALIVGTSSGLLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLE 156 (1325)
Q Consensus 77 ~V~~v~~spdg~~La~as~dG~I~lw~~~~~~~e~vg~~~~~I~~~awSPDG~~LA~~s~dgtV~l~s~~~d~~~e~~l~ 156 (1325)
.+.+++|+|.|+.+++ ..+|...|+.....+-...|. =..++|+++++ .|+....++|.+. ++++......+.
T Consensus 34 ~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k~~G~----g~~~vw~~~n~-yAv~~~~~~I~I~-kn~~~~~~k~i~ 106 (443)
T PF04053_consen 34 YPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNKAFGS----GLSFVWSSRNR-YAVLESSSTIKIY-KNFKNEVVKSIK 106 (443)
T ss_dssp --SEEEE-TTSSEEEE-EETTEEEEEETTTTEEEEEEE-----SEEEE-TSSE-EEEE-TTS-EEEE-ETTEE-TT----
T ss_pred CCeeEEECCCCCEEEE-EcCCEEEEEEccCCcccccCc----eeEEEEecCcc-EEEEECCCeEEEE-EcCccccceEEc
Confidence 5889999999999998 568999999865544444443 24578999655 7777778889886 444433211221
Q ss_pred ccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeecCCCCceeEEEEccCCCe
Q 000731 157 ELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGAN 236 (1325)
Q Consensus 157 ~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~~~v~~lawsPdG~~ 236 (1325)
.. ..+..|-- |..|+ +.+ ++.|.+||.++|+++...+-. + +..+.|||+|++
T Consensus 107 ~~---------------~~~~~If~---G~LL~-~~~-------~~~i~~yDw~~~~~i~~i~v~-~-vk~V~Ws~~g~~ 158 (443)
T PF04053_consen 107 LP---------------FSVEKIFG---GNLLG-VKS-------SDFICFYDWETGKLIRRIDVS-A-VKYVIWSDDGEL 158 (443)
T ss_dssp -S---------------S-EEEEE----SSSEE-EEE-------TTEEEEE-TTT--EEEEESS--E--EEEEE-TTSSE
T ss_pred CC---------------cccceEEc---CcEEE-EEC-------CCCEEEEEhhHcceeeEEecC-C-CcEEEEECCCCE
Confidence 11 01223322 99888 553 357999999899998886632 2 789999999999
Q ss_pred EEEEecCCCCCCCCeEEEEeCC
Q 000731 237 IAAVYDRKSENKCPSIVFYERN 258 (1325)
Q Consensus 237 IAs~~~d~~~~~~~~V~~~e~n 258 (1325)
+|-.+.+ .+.+++.|
T Consensus 159 val~t~~-------~i~il~~~ 173 (443)
T PF04053_consen 159 VALVTKD-------SIYILKYN 173 (443)
T ss_dssp EEEE-S--------SEEEEEE-
T ss_pred EEEEeCC-------eEEEEEec
Confidence 9999864 57777654
No 308
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.37 E-value=0.00079 Score=79.13 Aligned_cols=167 Identities=13% Similarity=0.115 Sum_probs=113.0
Q ss_pred EeceecCcEEEEEEcCCCCeEEEEeCCccEEEEee--cCceeeeeeccccCCCceeccCcc--ccCCCCeEEEEEecCCc
Q 000731 111 VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTH--DWDLLYENPLEELAEGFDVHEPEL--SSSFSFKSPISWRGDGK 186 (1325)
Q Consensus 111 ~vg~~~~~I~~~awSPDG~~LA~~s~dgtV~l~s~--~~d~~~e~~l~~~~~~~~Vs~tqf--~~~~~~i~~isWspDG~ 186 (1325)
.+| |...|.+++==.+.+..++++.|+||++|+. .+|-+.. +..|| +.|...|.++.|-.|-+
T Consensus 731 f~G-H~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~t------------saCQfTY~aHkk~i~~igfL~~lr 797 (1034)
T KOG4190|consen 731 FTG-HQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGT------------SACQFTYQAHKKPIHDIGFLADLR 797 (1034)
T ss_pred ccC-cHHHhHHHHhcccccceeeccCCceEEEEEeccccCcccc------------ceeeeEhhhccCcccceeeeeccc
Confidence 455 4777887665557788999999999999973 2222211 11232 25667789999999999
Q ss_pred EEEEeeccccccCCCCEEEEEECCCCceeeeec--CCCCceeEEEEccC-CC--eEEEEecCCCCCCCCeEEEEe-CCCc
Q 000731 187 YFATLSEFCNSSKLHKRLKVWERDSGTLQASSE--LKAFMGAVLEWMPS-GA--NIAAVYDRKSENKCPSIVFYE-RNGL 260 (1325)
Q Consensus 187 ~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e--~~~~~v~~lawsPd-G~--~IAs~~~d~~~~~~~~V~~~e-~nGl 260 (1325)
++| +. |+-|.+||+--|.+++..+ +..+.+..+-.-|+ -+ +||.++.. .+|++|| |.+.
T Consensus 798 ~i~-Sc--------D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsae------STVKl~DaRsce 862 (1034)
T KOG4190|consen 798 SIA-SC--------DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAE------STVKLFDARSCE 862 (1034)
T ss_pred eee-ec--------cCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccch------hhheeeeccccc
Confidence 998 32 4789999998888877432 34444445554454 22 35555553 5799998 4443
Q ss_pred eEEEEEec-cCC-CCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCe
Q 000731 261 ERSSFDIN-EQI-DSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNH 308 (1325)
Q Consensus 261 ~~~~f~l~-~~~-~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~n~~ 308 (1325)
-..++.+- .++ ...+..++--|.|..||.+.+++ +|-+.|..|+.
T Consensus 863 ~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnG---ci~~LDaR~G~ 909 (1034)
T KOG4190|consen 863 WTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNG---CIAILDARNGK 909 (1034)
T ss_pred ceeeEEeccCCCCchheeEEEeccCcchhhHHhcCC---cEEEEecCCCc
Confidence 34444333 222 35689999999999999999998 89888887753
No 309
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=97.36 E-value=0.008 Score=68.36 Aligned_cols=149 Identities=19% Similarity=0.179 Sum_probs=86.7
Q ss_pred cEEEEEEcCCCCeEEEEe--CCc-cEEEEeecCceeeeeeccccCCCceeccCccccCCCCeEEEEEecCCcEEEEeecc
Q 000731 118 GVRFISPSPDGDLLGVTT--GFG-QILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEF 194 (1325)
Q Consensus 118 ~I~~~awSPDG~~LA~~s--~dg-tV~l~s~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~ 194 (1325)
.+.++++||||+.+|.++ .++ .+.++... ...... + . .......+|++||...+ +..
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~-~~~~~~-~-~---------------g~~l~~PS~d~~g~~W~-v~~- 84 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG-GPVRPV-L-T---------------GGSLTRPSWDPDGWVWT-VDD- 84 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCC-Ccceee-c-c---------------CCccccccccCCCCEEE-EEc-
Confidence 689999999999999988 433 33333221 111111 0 0 12457889999998777 542
Q ss_pred ccccCCCCEEEEE-ECCCCceeee--ecC-CCCceeEEEEccCCCeEEEEecCCCCCCCCeEEE--EeC--CCceEE---
Q 000731 195 CNSSKLHKRLKVW-ERDSGTLQAS--SEL-KAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVF--YER--NGLERS--- 263 (1325)
Q Consensus 195 d~~~~~d~~irVW-d~~~G~l~~t--~e~-~~~~v~~lawsPdG~~IAs~~~d~~~~~~~~V~~--~e~--nGl~~~--- 263 (1325)
++...+++ +..+|..... .-+ ..+.|.++.+||||..+|....+.. ...|.+ -.+ +|..+.
T Consensus 85 -----~~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~---~~~v~va~V~r~~~g~~~~l~~ 156 (253)
T PF10647_consen 85 -----GSGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGG---GGRVYVAGVVRDGDGVPRRLTG 156 (253)
T ss_pred -----CCCceEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCC---CCeEEEEEEEeCCCCCcceecc
Confidence 23455555 3335544332 212 2227899999999999998875432 233333 333 341111
Q ss_pred EEEeccCCCCcEEEEEEccCCCeeEEEEccC
Q 000731 264 SFDINEQIDSTVELLKWNCMSDLLAAVVRFE 294 (1325)
Q Consensus 264 ~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~ 294 (1325)
...+.......+.+++|.+++++++.+...+
T Consensus 157 ~~~~~~~~~~~v~~v~W~~~~~L~V~~~~~~ 187 (253)
T PF10647_consen 157 PRRVAPPLLSDVTDVAWSDDSTLVVLGRSAG 187 (253)
T ss_pred ceEecccccCcceeeeecCCCEEEEEeCCCC
Confidence 0111111234689999999999877776544
No 310
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.33 E-value=0.0022 Score=79.54 Aligned_cols=130 Identities=15% Similarity=0.191 Sum_probs=88.4
Q ss_pred ccCCCEEEEEECCCcEEEEeCCCCeEEEeceecCcEEEEEEcCC-----CCeEEEEeCCccEEEEeecCceee-eeeccc
Q 000731 84 LMEKEALIVGTSSGLLLLHSVDGNATEVVGRVEGGVRFISPSPD-----GDLLGVTTGFGQILVMTHDWDLLY-ENPLEE 157 (1325)
Q Consensus 84 spdg~~La~as~dG~I~lw~~~~~~~e~vg~~~~~I~~~awSPD-----G~~LA~~s~dgtV~l~s~~~d~~~-e~~l~~ 157 (1325)
--+|+.++++|.||+|.+-.+.+.+-...-.+...|.+++++|| .+..++|+..| +++..|.|=--. ...++
T Consensus 80 ~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~- 157 (846)
T KOG2066|consen 80 ILEGEYVASCSDDGKVVIGSLFTDDEITQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLS- 157 (846)
T ss_pred ccCCceEEEecCCCcEEEeeccCCccceeEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeee-
Confidence 45799999999999999988876543333345778999999999 67788888888 777667662211 11122
Q ss_pred cCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeecCCCCce------eEEEEc
Q 000731 158 LAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMG------AVLEWM 231 (1325)
Q Consensus 158 ~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~~~v------~~laws 231 (1325)
...+.|.+|+|++ .++| =++ |--|||||+.+++.+..-++....+ ..+.|.
T Consensus 158 -------------~~eG~I~~i~W~g--~lIA-Wan-------d~Gv~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~ 214 (846)
T KOG2066|consen 158 -------------EGEGPIHSIKWRG--NLIA-WAN-------DDGVKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQ 214 (846)
T ss_pred -------------cCccceEEEEecC--cEEE-Eec-------CCCcEEEeccccceeeccCCCCCCCCcccCCCceEec
Confidence 2346789999985 5777 432 2348999997777666555433332 467777
Q ss_pred cCCCeEE
Q 000731 232 PSGANIA 238 (1325)
Q Consensus 232 PdG~~IA 238 (1325)
|+.+++.
T Consensus 215 ~~~~LVI 221 (846)
T KOG2066|consen 215 DEDRLVI 221 (846)
T ss_pred CCCeEEE
Confidence 7765543
No 311
>PLN03218 maturation of RBCL 1; Provisional
Probab=97.33 E-value=0.037 Score=74.63 Aligned_cols=256 Identities=13% Similarity=0.078 Sum_probs=152.6
Q ss_pred CCchHHHHHHHHHHHhhcCCCCCC-chhHhhhHhhcCCChhHHHHHHHHHHHHhhcccCCCCCCCCChhhHHHHHHHHHh
Q 000731 809 CNKVSSVLLAIRKALEEKVPESPS-RELCILTTLARSDPPALEEALERIKIIRETELLGSDEPRRMSYPSAEEALKHLLW 887 (1325)
Q Consensus 809 ~~KV~~iC~a~~~~l~~~~~~~~~-~~~~ilT~~~~~~pp~le~aL~~i~~l~~~~~~~~~~~~~~~~~~ae~alkyl~~ 887 (1325)
.+++......+.+..+.. ..++. ....+|.+|++..- +++|+.+...+++..... +...
T Consensus 485 ~G~vd~A~~vf~eM~~~G-v~PdvvTynaLI~gy~k~G~--~eeAl~lf~~M~~~Gv~P-------D~vT---------- 544 (1060)
T PLN03218 485 SGKVDAMFEVFHEMVNAG-VEANVHTFGALIDGCARAGQ--VAKAFGAYGIMRSKNVKP-------DRVV---------- 544 (1060)
T ss_pred CcCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHCcC--HHHHHHHHHHHHHcCCCC-------CHHH----------
Confidence 356666555444333321 12222 34577888888876 889998888887542211 2111
Q ss_pred hccHHHHHHHHHhccChhHHHHHHHHhcCCcccchHhHHHHhcCCchhccc--cHHH--hhcCHHHHHHHHHHcCC----
Q 000731 888 LADSEAVYEAALGLYDLNLAAIVALNSQRDPKEFLPYLQELESMPPLLMRY--TIDL--RLQRFENALKHIVSMGD---- 959 (1325)
Q Consensus 888 L~d~n~Ly~~ALg~YD~~lal~VAq~sqkDPkeYLpfL~~L~~l~~~~~~~--~Id~--~L~rye~Al~~l~~~g~---- 959 (1325)
.|.|-+.....-+++-|..+-+.-... -..+.++..-| .|+. ..|++++|.+.|.++.+
T Consensus 545 ---YnsLI~a~~k~G~~deA~~lf~eM~~~----------~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~ 611 (1060)
T PLN03218 545 ---FNALISACGQSGAVDRAFDVLAEMKAE----------THPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIK 611 (1060)
T ss_pred ---HHHHHHHHHHCCCHHHHHHHHHHHHHh----------cCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC
Confidence 122222222223344433332221000 00122221111 2322 35778888888876632
Q ss_pred ---CcHHHHHHHHHHHhcChHHHHhhc-C------CcHHHHHHHHHHHHHHhccccHHHHHHHHHHcCC---------HH
Q 000731 960 ---SYHADCLNLMKKYAQLFPLGLKLI-T------DPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSS---------LE 1020 (1325)
Q Consensus 960 ---~~~d~ale~~~~~~~ly~~AL~L~-~------d~~~~~~i~~~~a~~L~~~~~~~eAa~~y~~ag~---------~e 1020 (1325)
..+...+..+.+. +.+++|+++| . .|. ...+....+.+...+++++|..+|....+ |.
T Consensus 612 p~~~tynsLI~ay~k~-G~~deAl~lf~eM~~~Gv~PD--~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tyn 688 (1060)
T PLN03218 612 GTPEVYTIAVNSCSQK-GDWDFALSIYDDMKKKGVKPD--EVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYS 688 (1060)
T ss_pred CChHHHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 1246677777888 8888888887 1 222 12444555667778888888888877532 45
Q ss_pred HHHHHHHHcCCHHHHHHHHhhc---CCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcCC--------HHHHHHHHHH
Q 000731 1021 KAMKAYRASGNWSGVLTVAGLL---KLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCGD--------VTNGISLLID 1089 (1325)
Q Consensus 1021 kAl~~y~~ag~W~~al~la~~l---~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~yl~d--------~e~Av~~~~~ 1089 (1325)
-.+.+|.++|+|++|+.+-..+ +..++ ...+..|...+.+.|++++|.++|.++... +...+..|++
T Consensus 689 sLI~ay~k~G~~eeA~~lf~eM~~~g~~Pd--vvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k 766 (1060)
T PLN03218 689 SLMGACSNAKNWKKALELYEDIKSIKLRPT--VSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASER 766 (1060)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 6778888999988887776654 22232 245778888888999999999998875422 5677888999
Q ss_pred hcCHHHHHHHHHh
Q 000731 1090 ARDWEEALRVAFM 1102 (1325)
Q Consensus 1090 ~~~w~eA~rLa~~ 1102 (1325)
.+++++|..+-..
T Consensus 767 ~G~le~A~~l~~~ 779 (1060)
T PLN03218 767 KDDADVGLDLLSQ 779 (1060)
T ss_pred CCCHHHHHHHHHH
Confidence 9999999876543
No 312
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.32 E-value=0.019 Score=64.92 Aligned_cols=193 Identities=16% Similarity=0.138 Sum_probs=103.2
Q ss_pred ceeEEeeecCCCEEEEEeC-CCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEE-CCCcE
Q 000731 22 ILQFSALDIEQNRLFFASS-ANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGT-SSGLL 99 (1325)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~-~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~V~~v~~spdg~~La~as-~dG~I 99 (1325)
.+.+++||+++++||++.+ ...|++++. .++. ++.+++...+-.-+|+|.-++. ++++. .++++
T Consensus 23 e~SGLTy~pd~~tLfaV~d~~~~i~els~---~G~v----------lr~i~l~g~~D~EgI~y~g~~~-~vl~~Er~~~L 88 (248)
T PF06977_consen 23 ELSGLTYNPDTGTLFAVQDEPGEIYELSL---DGKV----------LRRIPLDGFGDYEGITYLGNGR-YVLSEERDQRL 88 (248)
T ss_dssp -EEEEEEETTTTEEEEEETTTTEEEEEET---T--E----------EEEEE-SS-SSEEEEEE-STTE-EEEEETTTTEE
T ss_pred CccccEEcCCCCeEEEEECCCCEEEEEcC---CCCE----------EEEEeCCCCCCceeEEEECCCE-EEEEEcCCCcE
Confidence 6899999999999999977 556777776 3443 2222222224578999987775 45555 48888
Q ss_pred EEEeCC--CCeE-----E--Eec---eecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeeeccccCCCceeccC
Q 000731 100 LLHSVD--GNAT-----E--VVG---RVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEP 167 (1325)
Q Consensus 100 ~lw~~~--~~~~-----e--~vg---~~~~~I~~~awSPDG~~LA~~s~dgtV~l~s~~~d~~~e~~l~~~~~~~~Vs~t 167 (1325)
.+...+ +..+ . .+| ....|+..++|+|.++.|.++-+.....++...... ....+.... ...+...
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~-~~~~~~~~~-~~~~~~~ 166 (248)
T PF06977_consen 89 YIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFP-GGFDLFVSD-DQDLDDD 166 (248)
T ss_dssp EEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT--SS--EEEE--HHHH-H
T ss_pred EEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEcccc-Cccceeecc-ccccccc
Confidence 888773 2211 1 122 234679999999999999998877666555322211 000000000 0000000
Q ss_pred ccccCCCCeEEEEEecCC-cEEEEeeccccccCCCCEEEEEECCCCceeeeecCCCC---------ceeEEEEccCCCeE
Q 000731 168 ELSSSFSFKSPISWRGDG-KYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAF---------MGAVLEWMPSGANI 237 (1325)
Q Consensus 168 qf~~~~~~i~~isWspDG-~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~~---------~v~~lawsPdG~~I 237 (1325)
. ..-.....+++.|.. .+++ .|. ..+.+-++|+ +|+..+...-..+ .-..|+|.|+|++.
T Consensus 167 ~--~~~~d~S~l~~~p~t~~lli-LS~------es~~l~~~d~-~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LY 236 (248)
T PF06977_consen 167 K--LFVRDLSGLSYDPRTGHLLI-LSD------ESRLLLELDR-QGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLY 236 (248)
T ss_dssp T----SS---EEEEETTTTEEEE-EET------TTTEEEEE-T-T--EEEEEE-STTGGG-SS---SEEEEEE-TT--EE
T ss_pred c--ceeccccceEEcCCCCeEEE-EEC------CCCeEEEECC-CCCEEEEEEeCCcccCcccccCCccEEEECCCCCEE
Confidence 0 011235788888874 5666 653 3588999998 9998776432221 23789999999876
Q ss_pred EEE
Q 000731 238 AAV 240 (1325)
Q Consensus 238 As~ 240 (1325)
.++
T Consensus 237 Ivs 239 (248)
T PF06977_consen 237 IVS 239 (248)
T ss_dssp EEE
T ss_pred EEc
Confidence 655
No 313
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.31 E-value=0.0024 Score=77.46 Aligned_cols=109 Identities=16% Similarity=0.190 Sum_probs=72.8
Q ss_pred CEEEEEEcc-CCCEEEE----EECCCcEEE----EeCCCCeEEEe--c--eecCcEEEEEEcCCCCeEEEEeCCccEEEE
Q 000731 77 SITAFDYLM-EKEALIV----GTSSGLLLL----HSVDGNATEVV--G--RVEGGVRFISPSPDGDLLGVTTGFGQILVM 143 (1325)
Q Consensus 77 ~V~~v~~sp-dg~~La~----as~dG~I~l----w~~~~~~~e~v--g--~~~~~I~~~awSPDG~~LA~~s~dgtV~l~ 143 (1325)
.+.++.||- +..++-+ .+.+|.+.+ |+...+++..+ - .+...|.|.++||+++.|++|..||+|++|
T Consensus 207 dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLy 286 (545)
T PF11768_consen 207 DPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILY 286 (545)
T ss_pred CcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEE
Confidence 457778876 3344433 356776544 55544444321 1 236789999999999999999999999998
Q ss_pred eecCceeeeeeccccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEEC
Q 000731 144 THDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWER 209 (1325)
Q Consensus 144 s~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~ 209 (1325)
+..-....-.... -....++|.|||.+|+ +++ ..|.+++||.
T Consensus 287 D~~~~~t~~~ka~-----------------~~P~~iaWHp~gai~~-V~s------~qGelQ~FD~ 328 (545)
T PF11768_consen 287 DTTRGVTLLAKAE-----------------FIPTLIAWHPDGAIFV-VGS------EQGELQCFDM 328 (545)
T ss_pred EcCCCeeeeeeec-----------------ccceEEEEcCCCcEEE-EEc------CCceEEEEEe
Confidence 6432221111100 1237899999999999 764 3589999998
No 314
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.28 E-value=0.014 Score=74.04 Aligned_cols=181 Identities=14% Similarity=0.094 Sum_probs=99.5
Q ss_pred CCEEEEEEccCCCEEEEEE------CCCcEEEE--eCCCCeEEEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEee-c
Q 000731 76 DSITAFDYLMEKEALIVGT------SSGLLLLH--SVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTH-D 146 (1325)
Q Consensus 76 ~~V~~v~~spdg~~La~as------~dG~I~lw--~~~~~~~e~vg~~~~~I~~~awSPDG~~LA~~s~dgtV~l~s~-~ 146 (1325)
..+.+.+.||||+.+|... .|+.-.|| +..+....... .....+.+|||||+.|++++....+..... .
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~--g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~ 427 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLE--GHSLTRPSWSLDADAVWVVVDGNTVVRVIRDP 427 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeec--CCCCCCceECCCCCceEEEecCcceEEEeccC
Confidence 4678999999999998776 24443444 54333322222 124889999999999999875434332211 1
Q ss_pred Cc-eeeeeeccccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEE---EECCCCceeee-----
Q 000731 147 WD-LLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKV---WERDSGTLQAS----- 217 (1325)
Q Consensus 147 ~d-~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~irV---Wd~~~G~l~~t----- 217 (1325)
.. .+....+.... . .+ ..+..|..+.|||||..+|.+. +++|.| =....|+ ...
T Consensus 428 ~~gql~~~~vd~ge----~--~~--~~~g~Issl~wSpDG~RiA~i~--------~g~v~Va~Vvr~~~G~-~~l~~~~~ 490 (591)
T PRK13616 428 ATGQLARTPVDASA----V--AS--RVPGPISELQLSRDGVRAAMII--------GGKVYLAVVEQTEDGQ-YALTNPRE 490 (591)
T ss_pred CCceEEEEeccCch----h--hh--ccCCCcCeEEECCCCCEEEEEE--------CCEEEEEEEEeCCCCc-eeecccEE
Confidence 11 11111111111 0 00 1235689999999999999443 145555 3334665 222
Q ss_pred -ecCCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeCCCceEEEEEeccC-CCCcEEEEEEcc
Q 000731 218 -SELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQ-IDSTVELLKWNC 282 (1325)
Q Consensus 218 -~e~~~~~v~~lawsPdG~~IAs~~~d~~~~~~~~V~~~e~nGl~~~~f~l~~~-~~~~V~~laWSp 282 (1325)
.........+++|.++|.++ .+..+. ...|...+.+|..... ++.. ....|.+|+=++
T Consensus 491 l~~~l~~~~~~l~W~~~~~L~-V~~~~~----~~~v~~v~vDG~~~~~--~~~~n~~~~v~~vaa~~ 550 (591)
T PRK13616 491 VGPGLGDTAVSLDWRTGDSLV-VGRSDP----EHPVWYVNLDGSNSDA--LPSRNLSAPVVAVAASP 550 (591)
T ss_pred eecccCCccccceEecCCEEE-EEecCC----CCceEEEecCCccccc--cCCCCccCceEEEecCC
Confidence 11223335789999999966 443332 2446555666654321 1211 123466777665
No 315
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=97.25 E-value=0.00068 Score=53.20 Aligned_cols=34 Identities=26% Similarity=0.332 Sum_probs=30.5
Q ss_pred EeceecCcEEEEEEcCCCCeEEEEeCCccEEEEe
Q 000731 111 VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMT 144 (1325)
Q Consensus 111 ~vg~~~~~I~~~awSPDG~~LA~~s~dgtV~l~s 144 (1325)
....|.+.|++++|+|++..||+++.|++|++|+
T Consensus 6 ~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 6 TFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 3445789999999999999999999999999984
No 316
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.24 E-value=0.005 Score=77.95 Aligned_cols=150 Identities=12% Similarity=0.060 Sum_probs=80.2
Q ss_pred CcEEEEEEcCCCCeEEEEeC------CccEEEEeecCceeeeeeccccCCCceeccCccccCCCCeEEEEEecCCcEEEE
Q 000731 117 GGVRFISPSPDGDLLGVTTG------FGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFAT 190 (1325)
Q Consensus 117 ~~I~~~awSPDG~~LA~~s~------dgtV~l~s~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAt 190 (1325)
..+.+++.||||+.+|.... |..-.||.-...--. ..+.. + .....-+|+|||..+++
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~-~~lt~-------------g--~~~t~PsWspDG~~lw~ 413 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVA-VQVLE-------------G--HSLTRPSWSLDADAVWV 413 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcc-eeeec-------------C--CCCCCceECCCCCceEE
Confidence 36789999999999999872 444444432111000 11100 1 12478999999998885
Q ss_pred eeccccc-----cCCCCEEEEEECCCCceeeeecCCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEE--EeC--CCce
Q 000731 191 LSEFCNS-----SKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVF--YER--NGLE 261 (1325)
Q Consensus 191 vss~d~~-----~~~d~~irVWd~~~G~l~~t~e~~~~~v~~lawsPdG~~IAs~~~d~~~~~~~~V~~--~e~--nGl~ 261 (1325)
++.-... ..+.+.+.+.+.+.|+... ...+.+.++.|||||..||.... ..|.+ -.+ .|..
T Consensus 414 v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~~-------g~v~Va~Vvr~~~G~~ 483 (591)
T PRK13616 414 VVDGNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMIIG-------GKVYLAVVEQTEDGQY 483 (591)
T ss_pred EecCcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEEC-------CEEEEEEEEeCCCCce
Confidence 5410000 0011223322333333322 23566899999999999998764 23433 222 3421
Q ss_pred E-EEE-EeccCCCCcEEEEEEccCCCeeEEEEcc
Q 000731 262 R-SSF-DINEQIDSTVELLKWNCMSDLLAAVVRF 293 (1325)
Q Consensus 262 ~-~~f-~l~~~~~~~V~~laWSpDg~~LAs~~~d 293 (1325)
+ ... .+.......+.++.|.+|++++ ++..+
T Consensus 484 ~l~~~~~l~~~l~~~~~~l~W~~~~~L~-V~~~~ 516 (591)
T PRK13616 484 ALTNPREVGPGLGDTAVSLDWRTGDSLV-VGRSD 516 (591)
T ss_pred eecccEEeecccCCccccceEecCCEEE-EEecC
Confidence 1 000 0111112346889999999955 55443
No 317
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.23 E-value=0.12 Score=62.99 Aligned_cols=204 Identities=13% Similarity=0.048 Sum_probs=108.8
Q ss_pred EEEEEEccCCCEEEEE-ECCCc----EEEEeCCCCeEE--EeceecCcEEEEEEcCCCCeEEEEeCCcc-----------
Q 000731 78 ITAFDYLMEKEALIVG-TSSGL----LLLHSVDGNATE--VVGRVEGGVRFISPSPDGDLLGVTTGFGQ----------- 139 (1325)
Q Consensus 78 V~~v~~spdg~~La~a-s~dG~----I~lw~~~~~~~e--~vg~~~~~I~~~awSPDG~~LA~~s~dgt----------- 139 (1325)
+..+.+||||+.||.+ +.+|. |++.|+.+++.- .+.... -..++|++||+.|....-+..
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~--~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~ 203 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPK--FSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ 203 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEE--SEEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccc--cceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence 3468899999999976 45565 899999988653 212111 123999999999988875442
Q ss_pred EEEEeecCceeeeeeccccCCCceeccCccccCC-CC-eEEEEEecCCcEEEEeeccccccCCC-CEEEEEECCCC----
Q 000731 140 ILVMTHDWDLLYENPLEELAEGFDVHEPELSSSF-SF-KSPISWRGDGKYFATLSEFCNSSKLH-KRLKVWERDSG---- 212 (1325)
Q Consensus 140 V~l~s~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~-~~-i~~isWspDG~~lAtvss~d~~~~~d-~~irVWd~~~G---- 212 (1325)
|..|.. +....+- .. -|...+ .. ...+.+++||+++. +.+.. +.. ..+.+-+..++
T Consensus 204 v~~~~~-gt~~~~d--------~l----vfe~~~~~~~~~~~~~s~d~~~l~-i~~~~---~~~~s~v~~~d~~~~~~~~ 266 (414)
T PF02897_consen 204 VYRHKL-GTPQSED--------EL----VFEEPDEPFWFVSVSRSKDGRYLF-ISSSS---GTSESEVYLLDLDDGGSPD 266 (414)
T ss_dssp EEEEET-TS-GGG---------EE----EEC-TTCTTSEEEEEE-TTSSEEE-EEEES---SSSEEEEEEEECCCTTTSS
T ss_pred EEEEEC-CCChHhC--------ee----EEeecCCCcEEEEEEecCcccEEE-EEEEc---cccCCeEEEEeccccCCCc
Confidence 333322 2222220 01 122212 22 57899999999987 55433 223 56888888554
Q ss_pred -ceeeeecCCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeCCCce--EEEEEeccCCCCcEEEEEEccCCCeeEE
Q 000731 213 -TLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLE--RSSFDINEQIDSTVELLKWNCMSDLLAA 289 (1325)
Q Consensus 213 -~l~~t~e~~~~~v~~lawsPdG~~IAs~~~d~~~~~~~~V~~~e~nGl~--~~~f~l~~~~~~~V~~laWSpDg~~LAs 289 (1325)
.........++....+... .+.++..+..+. ....|.-.+.+... +....+..+ ...+.--.++..+..|+.
T Consensus 267 ~~~~~l~~~~~~~~~~v~~~-~~~~yi~Tn~~a---~~~~l~~~~l~~~~~~~~~~~l~~~-~~~~~l~~~~~~~~~Lvl 341 (414)
T PF02897_consen 267 AKPKLLSPREDGVEYYVDHH-GDRLYILTNDDA---PNGRLVAVDLADPSPAEWWTVLIPE-DEDVSLEDVSLFKDYLVL 341 (414)
T ss_dssp -SEEEEEESSSS-EEEEEEE-TTEEEEEE-TT----TT-EEEEEETTSTSGGGEEEEEE---SSSEEEEEEEEETTEEEE
T ss_pred CCcEEEeCCCCceEEEEEcc-CCEEEEeeCCCC---CCcEEEEecccccccccceeEEcCC-CCceeEEEEEEECCEEEE
Confidence 4444445555555555555 444444443321 23455555543222 111112211 222333334556666776
Q ss_pred EEccCCCCeEEEEEee
Q 000731 290 VVRFEEYDSVKICFFS 305 (1325)
Q Consensus 290 ~~~d~~~~~VqLW~~~ 305 (1325)
.........|++|+..
T Consensus 342 ~~~~~~~~~l~v~~~~ 357 (414)
T PF02897_consen 342 SYRENGSSRLRVYDLD 357 (414)
T ss_dssp EEEETTEEEEEEEETT
T ss_pred EEEECCccEEEEEECC
Confidence 6655544568888877
No 318
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=97.21 E-value=0.00077 Score=52.90 Aligned_cols=39 Identities=15% Similarity=0.228 Sum_probs=35.1
Q ss_pred CceeeeecCCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEEEe
Q 000731 212 GTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYE 256 (1325)
Q Consensus 212 G~l~~t~e~~~~~v~~lawsPdG~~IAs~~~d~~~~~~~~V~~~e 256 (1325)
|++..++.+|.+.+.+++|+|++++||+++.| +.|++|+
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D------~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSD------GTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETT------SEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCC------CEEEEEC
Confidence 56778889999999999999999999999986 5799996
No 319
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=97.20 E-value=0.031 Score=67.14 Aligned_cols=164 Identities=12% Similarity=0.065 Sum_probs=108.6
Q ss_pred ccHHHhhcCHHHHHHHHHHcCCC--cHH----HHHHHHHHHhcChHHHHhhc-----CCcH----HHHHHHHHHHHHHhc
Q 000731 938 YTIDLRLQRFENALKHIVSMGDS--YHA----DCLNLMKKYAQLFPLGLKLI-----TDPA----KMEQVLEAWADHLSD 1002 (1325)
Q Consensus 938 ~~Id~~L~rye~Al~~l~~~g~~--~~d----~ale~~~~~~~ly~~AL~L~-----~d~~----~~~~i~~~~a~~L~~ 1002 (1325)
..+....|+|++|+..|.++-.. ... .-..+..+. +.|++|++++ .+|. ....++..+|..+..
T Consensus 114 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 192 (389)
T PRK11788 114 GQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQE-KDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALA 192 (389)
T ss_pred HHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHh-chHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHh
Confidence 44555678999999998877321 111 112344667 8899998887 1222 123355677888888
Q ss_pred cccHHHHHHHHHHcCCH--------HHHHHHHHHcCCHHHHHHHHhhcC-CCHHHHHHHHHHHHHHHHHcCChHHHHHHH
Q 000731 1003 VKCFEDAATTYFCCSSL--------EKAMKAYRASGNWSGVLTVAGLLK-LGKDEVAKLAQELCEELQALGKPGEAAKIA 1073 (1325)
Q Consensus 1003 ~~~~~eAa~~y~~ag~~--------ekAl~~y~~ag~W~~al~la~~l~-~~~~~~~~l~~~la~~L~~~~~~~eAa~i~ 1073 (1325)
++++++|..+|.++-.. -....+|...|++++|+.+..+.- .++.........++..+...|++.+|...+
T Consensus 193 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l 272 (389)
T PRK11788 193 RGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFL 272 (389)
T ss_pred CCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999988886321 123367778888998887766532 233333445667788888889999998888
Q ss_pred HHhcC---C---HHHHHHHHHHhcCHHHHHHHHHh
Q 000731 1074 LDYCG---D---VTNGISLLIDARDWEEALRVAFM 1102 (1325)
Q Consensus 1074 ~~yl~---d---~e~Av~~~~~~~~w~eA~rLa~~ 1102 (1325)
.+... + ...-+.+|++.+++++|+.+..+
T Consensus 273 ~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~ 307 (389)
T PRK11788 273 RRALEEYPGADLLLALAQLLEEQEGPEAAQALLRE 307 (389)
T ss_pred HHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 77432 1 22336678888888888876543
No 320
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.16 E-value=0.025 Score=68.56 Aligned_cols=141 Identities=18% Similarity=0.231 Sum_probs=96.4
Q ss_pred hHHHHhhcCCcHHHHHHHHHHHHHHhccccHHHHHHHHHHc---------------------CCHHHHHHHHHHcCCHHH
Q 000731 976 FPLGLKLITDPAKMEQVLEAWADHLSDVKCFEDAATTYFCC---------------------SSLEKAMKAYRASGNWSG 1034 (1325)
Q Consensus 976 y~~AL~L~~d~~~~~~i~~~~a~~L~~~~~~~eAa~~y~~a---------------------g~~ekAl~~y~~ag~W~~ 1034 (1325)
|++|++| ||. +.+.+-..|.-|.+-+.|++|...|++| |..+-|+++|.++
T Consensus 241 y~eAvkl--dP~-f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykra----- 312 (966)
T KOG4626|consen 241 YEEAVKL--DPN-FLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRA----- 312 (966)
T ss_pred HHHhhcC--CCc-chHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHH-----
Confidence 7777776 553 4556667899999999999999999987 5557777777543
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHH---hcCCHHHH----HHHHHHhcCHHHHHHHHHhcCCch
Q 000731 1035 VLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALD---YCGDVTNG----ISLLIDARDWEEALRVAFMHRRED 1107 (1325)
Q Consensus 1035 al~la~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~---yl~d~e~A----v~~~~~~~~w~eA~rLa~~~~~~d 1107 (1325)
+. .+.+ . .+-+..||..|++.|+-.||..+|.+ |+-....| -..|.+-+.+++|.|+=.+--
T Consensus 313 -l~--~~P~-F----~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al--- 381 (966)
T KOG4626|consen 313 -LE--LQPN-F----PDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKAL--- 381 (966)
T ss_pred -Hh--cCCC-c----hHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHH---
Confidence 33 2222 2 24567889999999999999999966 33344444 356778888899988643210
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Q 000731 1108 LITKVKHASLECASSLIGEYKE---GLEKVGKYL 1138 (1325)
Q Consensus 1108 L~e~v~~~l~e~~~~~~e~l~~---~~~~~~k~~ 1138 (1325)
.|-|...++.+++...+++ ..+.+..|.
T Consensus 382 ---~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Yk 412 (966)
T KOG4626|consen 382 ---EVFPEFAAAHNNLASIYKQQGNLDDAIMCYK 412 (966)
T ss_pred ---hhChhhhhhhhhHHHHHHhcccHHHHHHHHH
Confidence 1778888888777666654 334444443
No 321
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=97.16 E-value=0.059 Score=71.18 Aligned_cols=183 Identities=12% Similarity=0.011 Sum_probs=107.0
Q ss_pred CCcccchHhHHHHhcC-Cc----hhccccHHHhhcCHHHHHHHHHHc---CCCcHHHH---HHHHHHHhcChHHHHhhc-
Q 000731 916 RDPKEFLPYLQELESM-PP----LLMRYTIDLRLQRFENALKHIVSM---GDSYHADC---LNLMKKYAQLFPLGLKLI- 983 (1325)
Q Consensus 916 kDPkeYLpfL~~L~~l-~~----~~~~~~Id~~L~rye~Al~~l~~~---g~~~~d~a---le~~~~~~~ly~~AL~L~- 983 (1325)
.++.+-+..++++... |. ......+....|+|++|+++|.++ .+...... ..+.... +.|++|++++
T Consensus 445 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~ 523 (899)
T TIGR02917 445 GQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQE-GNPDDAIQRFE 523 (899)
T ss_pred CCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHC-CCHHHHHHHHH
Confidence 4444445555555543 21 233446666778888888888764 22222111 1233455 6777777776
Q ss_pred ----CCcHHHHHHHHHHHHHHhccccHHHHHHHHHHcC--------CHHHHHHHHHHcCCHHHHHHHHhhcC-CCHHHHH
Q 000731 984 ----TDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCS--------SLEKAMKAYRASGNWSGVLTVAGLLK-LGKDEVA 1050 (1325)
Q Consensus 984 ----~d~~~~~~i~~~~a~~L~~~~~~~eAa~~y~~ag--------~~ekAl~~y~~ag~W~~al~la~~l~-~~~~~~~ 1050 (1325)
.+|. ...++..+|..+...+++++|...|.++- .+-....+|...|++++|+.+....- ..+.. .
T Consensus 524 ~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~ 601 (899)
T TIGR02917 524 KVLTIDPK-NLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDS-P 601 (899)
T ss_pred HHHHhCcC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC-H
Confidence 2333 33456667777777888888888877651 12234466667777777776665431 11111 2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHhcC----C---HHHHHHHHHHhcCHHHHHHHHH
Q 000731 1051 KLAQELCEELQALGKPGEAAKIALDYCG----D---VTNGISLLIDARDWEEALRVAF 1101 (1325)
Q Consensus 1051 ~l~~~la~~L~~~~~~~eAa~i~~~yl~----d---~e~Av~~~~~~~~w~eA~rLa~ 1101 (1325)
.....++..+...|++++|...|.+.+. + ......+|...++|++|+....
T Consensus 602 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 659 (899)
T TIGR02917 602 EAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLK 659 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4566677777777888888777766431 1 2334456667777777766543
No 322
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=97.13 E-value=0.0072 Score=77.67 Aligned_cols=180 Identities=15% Similarity=0.153 Sum_probs=101.6
Q ss_pred cCCcccchHhHHHHhcCCc-----hhccccHHHhhcCHHHHHHHHHHc---CCCcH----HHHHHHHHHHhcChHHHHhh
Q 000731 915 QRDPKEFLPYLQELESMPP-----LLMRYTIDLRLQRFENALKHIVSM---GDSYH----ADCLNLMKKYAQLFPLGLKL 982 (1325)
Q Consensus 915 qkDPkeYLpfL~~L~~l~~-----~~~~~~Id~~L~rye~Al~~l~~~---g~~~~----d~ale~~~~~~~ly~~AL~L 982 (1325)
+.++.+.+..+++.-.+++ .+.+..+...+|+|++|+..|.++ .++.. ..+. ...+. +.|++|+..
T Consensus 378 ~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~-~~~~~-g~~~eA~~~ 455 (615)
T TIGR00990 378 LGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGV-TQYKE-GSIASSMAT 455 (615)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHH-HHHHC-CCHHHHHHH
Confidence 3455555555555544422 344556667788899999888765 22211 2222 22455 677777777
Q ss_pred c-----CCcHHHHHHHHHHHHHHhccccHHHHHHHHHHcCCH---------------HHHHHHHHHcCCHHHHHHHHhh-
Q 000731 983 I-----TDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSSL---------------EKAMKAYRASGNWSGVLTVAGL- 1041 (1325)
Q Consensus 983 ~-----~d~~~~~~i~~~~a~~L~~~~~~~eAa~~y~~ag~~---------------ekAl~~y~~ag~W~~al~la~~- 1041 (1325)
+ ..| ....++..+|.-+...++|++|...|.++-.. .++...|...|++++|+.+..+
T Consensus 456 ~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kA 534 (615)
T TIGR00990 456 FRRCKKNFP-EAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKA 534 (615)
T ss_pred HHHHHHhCC-CChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 6 222 23456677888888888888888888875432 2233344445777777766544
Q ss_pred cCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcCCHHHHHHHHHHhcCHHHHHHH
Q 000731 1042 LKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCGDVTNGISLLIDARDWEEALRV 1099 (1325)
Q Consensus 1042 l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~yl~d~e~Av~~~~~~~~w~eA~rL 1099 (1325)
+..+++.. .....+|..+...|++.+|...|.+ +-....-..-...+..|.+|.++
T Consensus 535 l~l~p~~~-~a~~~la~~~~~~g~~~eAi~~~e~-A~~l~~~~~e~~~a~~~~~a~~~ 590 (615)
T TIGR00990 535 LIIDPECD-IAVATMAQLLLQQGDVDEALKLFER-AAELARTEGELVQAISYAEATRT 590 (615)
T ss_pred HhcCCCcH-HHHHHHHHHHHHccCHHHHHHHHHH-HHHHhccHHHHHHHHHHHHHHHH
Confidence 22233222 2455667777777777777766655 22222222223344455555544
No 323
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=97.12 E-value=0.033 Score=73.54 Aligned_cols=160 Identities=14% Similarity=0.088 Sum_probs=81.4
Q ss_pred cHHHhhcCHHHHHHHHHHc---CCCcH---HHHHHHHHHHhcChHHHHhhc----CCcHHHHHHHHHHHHHHhccccHHH
Q 000731 939 TIDLRLQRFENALKHIVSM---GDSYH---ADCLNLMKKYAQLFPLGLKLI----TDPAKMEQVLEAWADHLSDVKCFED 1008 (1325)
Q Consensus 939 ~Id~~L~rye~Al~~l~~~---g~~~~---d~ale~~~~~~~ly~~AL~L~----~d~~~~~~i~~~~a~~L~~~~~~~e 1008 (1325)
.+....|++++|+..+.++ ++... -....++.+. +.|++|++++ ........++..+|.-+...+++++
T Consensus 541 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 619 (899)
T TIGR02917 541 GLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGK-GQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNK 619 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHC-CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHH
Confidence 4444466677777666554 11111 1122334555 6666666665 1111223455666666667777777
Q ss_pred HHHHHHHcC--------CHHHHHHHHHHcCCHHHHHHHHhhc-CCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcC-
Q 000731 1009 AATTYFCCS--------SLEKAMKAYRASGNWSGVLTVAGLL-KLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCG- 1078 (1325)
Q Consensus 1009 Aa~~y~~ag--------~~ekAl~~y~~ag~W~~al~la~~l-~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~yl~- 1078 (1325)
|...|.++- .+.....+|...|+|++|+.+..+. ...++. ......++..+...|++.+|..++.....
T Consensus 620 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 698 (899)
T TIGR02917 620 AVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDN-TEAQIGLAQLLLAAKRTESAKKIAKSLQKQ 698 (899)
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 776666541 1223335556666666665554332 111111 23445566666666666666666655321
Q ss_pred ---C---HHHHHHHHHHhcCHHHHHHHH
Q 000731 1079 ---D---VTNGISLLIDARDWEEALRVA 1100 (1325)
Q Consensus 1079 ---d---~e~Av~~~~~~~~w~eA~rLa 1100 (1325)
+ ......+|...++|++|+...
T Consensus 699 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 726 (899)
T TIGR02917 699 HPKAALGFELEGDLYLRQKDYPAAIQAY 726 (899)
T ss_pred CcCChHHHHHHHHHHHHCCCHHHHHHHH
Confidence 1 112234555666666665543
No 324
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=97.08 E-value=0.016 Score=69.65 Aligned_cols=187 Identities=17% Similarity=0.196 Sum_probs=96.1
Q ss_pred HHHHHHhcCCcccchHhHHHHhcCCchhccccHHHhhcCHHHHHHHHHHcC---CCcH---HHHHHHHHHHhcChHHHHh
Q 000731 908 AIVALNSQRDPKEFLPYLQELESMPPLLMRYTIDLRLQRFENALKHIVSMG---DSYH---ADCLNLMKKYAQLFPLGLK 981 (1325)
Q Consensus 908 l~VAq~sqkDPkeYLpfL~~L~~l~~~~~~~~Id~~L~rye~Al~~l~~~g---~~~~---d~ale~~~~~~~ly~~AL~ 981 (1325)
..|++.++.+-+| +...+.+..+.+..+....|+|++|+.+|.++- ++.. -..-.+.... +.|++|++
T Consensus 17 ~~~~~~~~~~~~~-----~~~~~~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~A~~ 90 (389)
T PRK11788 17 WYMGRRSARQDQQ-----KESNRLSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRR-GEVDRAIR 90 (389)
T ss_pred HHHHhchhhhhhh-----hhhhhccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHc-CcHHHHHH
Confidence 4445555444433 233344455555566666677777777776652 1111 1111233455 66667766
Q ss_pred hc----CCc----HHHHHHHHHHHHHHhccccHHHHHHHHHHcCC--------HHHHHHHHHHcCCHHHHHHHHhhcC-C
Q 000731 982 LI----TDP----AKMEQVLEAWADHLSDVKCFEDAATTYFCCSS--------LEKAMKAYRASGNWSGVLTVAGLLK-L 1044 (1325)
Q Consensus 982 L~----~d~----~~~~~i~~~~a~~L~~~~~~~eAa~~y~~ag~--------~ekAl~~y~~ag~W~~al~la~~l~-~ 1044 (1325)
++ ..+ .....++..+|..+...+++++|..+|.++-+ +..-..+|...|+|++|+.+...+- .
T Consensus 91 ~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 170 (389)
T PRK11788 91 IHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKL 170 (389)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHh
Confidence 65 111 12224555666777777777777777766632 1112345566667777765554431 0
Q ss_pred CH----HHHHHHHHHHHHHHHHcCChHHHHHHHHHhcC-C---H---HHHHHHHHHhcCHHHHHHHH
Q 000731 1045 GK----DEVAKLAQELCEELQALGKPGEAAKIALDYCG-D---V---TNGISLLIDARDWEEALRVA 1100 (1325)
Q Consensus 1045 ~~----~~~~~l~~~la~~L~~~~~~~eAa~i~~~yl~-d---~---e~Av~~~~~~~~w~eA~rLa 1100 (1325)
++ .........++..+...|++.+|...|.+.+. + . -....+|++.+++++|+.+.
T Consensus 171 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 237 (389)
T PRK11788 171 GGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEAL 237 (389)
T ss_pred cCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 00 01222344566666667777777766666432 1 1 12334566666666666543
No 325
>PLN03077 Protein ECB2; Provisional
Probab=97.02 E-value=0.084 Score=70.69 Aligned_cols=97 Identities=16% Similarity=0.130 Sum_probs=52.7
Q ss_pred hcCHHHHHHHHHHc---C--CC--cHHHHHHHHHHHhcChHHHHhhc-----CCcHHHHHHHHHHHHHHhccccHHHHHH
Q 000731 944 LQRFENALKHIVSM---G--DS--YHADCLNLMKKYAQLFPLGLKLI-----TDPAKMEQVLEAWADHLSDVKCFEDAAT 1011 (1325)
Q Consensus 944 L~rye~Al~~l~~~---g--~~--~~d~ale~~~~~~~ly~~AL~L~-----~d~~~~~~i~~~~a~~L~~~~~~~eAa~ 1011 (1325)
.|++++|++.|.++ | ++ -+...+....+. +.++.|.+++ .+......++...-+-+...+++++|..
T Consensus 367 ~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~-g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~ 445 (857)
T PLN03077 367 NGLPDKALETYALMEQDNVSPDEITIASVLSACACL-GDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALE 445 (857)
T ss_pred CCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhcc-chHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHH
Confidence 35566666666543 1 11 134444455555 6666666655 1111222344444455556667777777
Q ss_pred HHHHcCC-----HHHHHHHHHHcCCHHHHHHHHhh
Q 000731 1012 TYFCCSS-----LEKAMKAYRASGNWSGVLTVAGL 1041 (1325)
Q Consensus 1012 ~y~~ag~-----~ekAl~~y~~ag~W~~al~la~~ 1041 (1325)
+|.+..+ |.--+..|...|++.+|+.+-.+
T Consensus 446 vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~ 480 (857)
T PLN03077 446 VFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQ 480 (857)
T ss_pred HHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHH
Confidence 7766543 44556667777777777665544
No 326
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=97.02 E-value=0.037 Score=61.93 Aligned_cols=207 Identities=15% Similarity=0.050 Sum_probs=123.0
Q ss_pred CCCcEEEEeCCCCeE---EEec-eecCcEEEEEEc---CCCC-eEEEEeCCccEEEEeecCceeeeeeccccCCCceecc
Q 000731 95 SSGLLLLHSVDGNAT---EVVG-RVEGGVRFISPS---PDGD-LLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHE 166 (1325)
Q Consensus 95 ~dG~I~lw~~~~~~~---e~vg-~~~~~I~~~awS---PDG~-~LA~~s~dgtV~l~s~~~d~~~e~~l~~~~~~~~Vs~ 166 (1325)
..|.+.+|+....+. ..+. .-..++..|.|+ -||. .|+-+-..|+|.+.-.+.+. ....+.+.. .+.++.
T Consensus 44 R~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~-ss~~L~~ls-~~ki~~ 121 (339)
T KOG0280|consen 44 RSGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDE-SSVHLRGLS-SKKISV 121 (339)
T ss_pred eccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccce-eeeeecccc-hhhhhh
Confidence 346666666644211 1111 113456667775 3455 67777788888887555432 222222222 111110
Q ss_pred CccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceee--eecCCCCceeEEEEccC-CCeEEEEecC
Q 000731 167 PELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQA--SSELKAFMGAVLEWMPS-GANIAAVYDR 243 (1325)
Q Consensus 167 tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~--t~e~~~~~v~~lawsPd-G~~IAs~~~d 243 (1325)
....++-|++-|.-++ ++- .++.+-+-+-..+.+.. +.++|+...+..+|+-. -+++.+|++|
T Consensus 122 -------~~~lslD~~~~~~~i~-vs~------s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD 187 (339)
T KOG0280|consen 122 -------VEALSLDISTSGTKIF-VSD------SRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDD 187 (339)
T ss_pred -------eeeeEEEeeccCceEE-EEc------CCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCC
Confidence 0236889999998877 652 23556543433666666 67788887777777543 3678888886
Q ss_pred CCCCCCCeEEEEeCCCceEEEEEec--cCCCCcEEEEEEcc-CCCeeEEEEccCCCCeEEEEEeeCCeeEEEeEEEEec-
Q 000731 244 KSENKCPSIVFYERNGLERSSFDIN--EQIDSTVELLKWNC-MSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLR- 319 (1325)
Q Consensus 244 ~~~~~~~~V~~~e~nGl~~~~f~l~--~~~~~~V~~laWSp-Dg~~LAs~~~d~~~~~VqLW~~~n~~wylkqel~~~~- 319 (1325)
..+..||.-- -++|..+ .-++..|.+|.=|| ++.++|+|+.|. .|++||+.|.. +.+.-..
T Consensus 188 ------~~l~~~D~R~--p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe---~i~~~DtRnm~----kPl~~~~v 252 (339)
T KOG0280|consen 188 ------GSLSCWDIRI--PKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDE---CIRVLDTRNMG----KPLFKAKV 252 (339)
T ss_pred ------ceEEEEEecC--CcceeeecceeeecceEEEecCCCCCceEEEecccc---ceeeeehhccc----CccccCcc
Confidence 5699998431 1233332 12345688887775 688999999998 99999998853 2222111
Q ss_pred CCc-EEEEEccCCC
Q 000731 320 RDG-IRFMWHPTKP 332 (1325)
Q Consensus 320 ~~~-~~v~Wsp~~~ 332 (1325)
..+ +.+.|+|...
T Consensus 253 ~GGVWRi~~~p~~~ 266 (339)
T KOG0280|consen 253 GGGVWRIKHHPEIF 266 (339)
T ss_pred ccceEEEEecchhh
Confidence 123 8889998765
No 327
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.97 E-value=0.004 Score=71.95 Aligned_cols=129 Identities=21% Similarity=0.260 Sum_probs=61.2
Q ss_pred CHHHHHHHHHHcCCCcHHHHHHHHHHHhcChHHHHhhc-CCcHHHHHHHHHHHHHHhccccHHHHHHHHHHcCCHHHHH-
Q 000731 946 RFENALKHIVSMGDSYHADCLNLMKKYAQLFPLGLKLI-TDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSSLEKAM- 1023 (1325)
Q Consensus 946 rye~Al~~l~~~g~~~~d~ale~~~~~~~ly~~AL~L~-~d~~~~~~i~~~~a~~L~~~~~~~eAa~~y~~ag~~ekAl- 1023 (1325)
+|++|...|.++|. .++.. +.|++|.+.| . --.+....++....-+.|.+|+.+|.+. ++++|+
T Consensus 30 ~~e~Aa~~y~~Aa~--------~fk~~-~~~~~A~~ay~k----Aa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~ 95 (282)
T PF14938_consen 30 DYEEAADLYEKAAN--------CFKLA-KDWEKAAEAYEK----AADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIE 95 (282)
T ss_dssp HHHHHHHHHHHHHH--------HHHHT-T-CHHHHHHHHH----HHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHH
T ss_pred CHHHHHHHHHHHHH--------HHHHH-hccchhHHHHHH----HHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHH
Confidence 57777777666542 44444 5555555554 1 0111222223333344455566666554 444444
Q ss_pred ------HHHHHcCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHc-CChHHHHHHHHHh------cCC-------HHHH
Q 000731 1024 ------KAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQAL-GKPGEAAKIALDY------CGD-------VTNG 1083 (1325)
Q Consensus 1024 ------~~y~~ag~W~~al~la~~l~~~~~~~~~l~~~la~~L~~~-~~~~eAa~i~~~y------l~d-------~e~A 1083 (1325)
+.|...|+++.+ .....++|+.+.+. +++++|.+.|.+= -+. ...+
T Consensus 96 ~~~~A~~~y~~~G~~~~a--------------A~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~ 161 (282)
T PF14938_consen 96 CYEKAIEIYREAGRFSQA--------------AKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKA 161 (282)
T ss_dssp HHHHHHHHHHHCT-HHHH--------------HHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcHHHH--------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHH
Confidence 444455554444 33344444444444 4444444444330 011 1346
Q ss_pred HHHHHHhcCHHHHHHHHHh
Q 000731 1084 ISLLIDARDWEEALRVAFM 1102 (1325)
Q Consensus 1084 v~~~~~~~~w~eA~rLa~~ 1102 (1325)
..++++.++|++|+.+-.+
T Consensus 162 A~l~~~l~~y~~A~~~~e~ 180 (282)
T PF14938_consen 162 ADLYARLGRYEEAIEIYEE 180 (282)
T ss_dssp HHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHH
Confidence 6778888888888876544
No 328
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=96.94 E-value=0.065 Score=70.77 Aligned_cols=106 Identities=15% Similarity=-0.040 Sum_probs=53.1
Q ss_pred HHHHHhccccHHHHHHHHHHcC--C-------HHHHHH---HHHHcCCHHHHHHHHhhcCC-CH-------------H-H
Q 000731 996 WADHLSDVKCFEDAATTYFCCS--S-------LEKAMK---AYRASGNWSGVLTVAGLLKL-GK-------------D-E 1048 (1325)
Q Consensus 996 ~a~~L~~~~~~~eAa~~y~~ag--~-------~ekAl~---~y~~ag~W~~al~la~~l~~-~~-------------~-~ 1048 (1325)
+|+.+...+++++|..+|.++- + .+.... +|...|++++|+.....+.. .+ + .
T Consensus 278 la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~ 357 (765)
T PRK10049 278 VASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDD 357 (765)
T ss_pred HHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCch
Confidence 4666666666777766666542 1 111122 44566666666655443210 00 0 1
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHhcC----C---HHHHHHHHHHhcCHHHHHHHHH
Q 000731 1049 VAKLAQELCEELQALGKPGEAAKIALDYCG----D---VTNGISLLIDARDWEEALRVAF 1101 (1325)
Q Consensus 1049 ~~~l~~~la~~L~~~~~~~eAa~i~~~yl~----d---~e~Av~~~~~~~~w~eA~rLa~ 1101 (1325)
.......+|..+...|++.+|..++.+-+. + .-.-..+|...+++++|+.+..
T Consensus 358 ~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~ 417 (765)
T PRK10049 358 WLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELK 417 (765)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 123344566666777777777776665221 1 1122334445566666665443
No 329
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=96.93 E-value=0.081 Score=68.54 Aligned_cols=159 Identities=9% Similarity=-0.006 Sum_probs=102.5
Q ss_pred HHhhcCHHHHHHHHHHcCC----CcH---HHHHHHHHHHhcChHHHHhhc-----CCcHHHHHHHHHHHHHHhccccHHH
Q 000731 941 DLRLQRFENALKHIVSMGD----SYH---ADCLNLMKKYAQLFPLGLKLI-----TDPAKMEQVLEAWADHLSDVKCFED 1008 (1325)
Q Consensus 941 d~~L~rye~Al~~l~~~g~----~~~---d~ale~~~~~~~ly~~AL~L~-----~d~~~~~~i~~~~a~~L~~~~~~~e 1008 (1325)
....|++++|+..+.++-. +.. -......... +.|++|++.+ .+|. ...+...+|..+...+++++
T Consensus 187 l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~-g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~e 264 (656)
T PRK15174 187 FLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAV-GKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSRE 264 (656)
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHC-CCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchh
Confidence 4457899999988876311 101 1122344567 7888888877 2333 35666778999999999986
Q ss_pred ----HHHHHHHcCCH----HHH----HHHHHHcCCHHHHHHHHhhc-CCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000731 1009 ----AATTYFCCSSL----EKA----MKAYRASGNWSGVLTVAGLL-KLGKDEVAKLAQELCEELQALGKPGEAAKIALD 1075 (1325)
Q Consensus 1009 ----Aa~~y~~ag~~----ekA----l~~y~~ag~W~~al~la~~l-~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~ 1075 (1325)
|..+|.++-.. ..+ ..+|...|+|++|+...++. ..+++. ......++..+...|++.+|...|.+
T Consensus 265 A~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~-~~a~~~La~~l~~~G~~~eA~~~l~~ 343 (656)
T PRK15174 265 AKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDL-PYVRAMYARALRQVGQYTAASDEFVQ 343 (656)
T ss_pred hHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 67777776322 122 25566778888887665432 112222 24556688899999999999999887
Q ss_pred hcC-CHHH------HHHHHHHhcCHHHHHHHHHh
Q 000731 1076 YCG-DVTN------GISLLIDARDWEEALRVAFM 1102 (1325)
Q Consensus 1076 yl~-d~e~------Av~~~~~~~~w~eA~rLa~~ 1102 (1325)
.+. +++. +..+|...+++++|+....+
T Consensus 344 al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~ 377 (656)
T PRK15174 344 LAREKGVTSKWNRYAAAALLQAGKTSEAESVFEH 377 (656)
T ss_pred HHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 542 2221 23467888999999876443
No 330
>PLN03077 Protein ECB2; Provisional
Probab=96.92 E-value=0.057 Score=72.29 Aligned_cols=155 Identities=14% Similarity=0.095 Sum_probs=94.1
Q ss_pred cHHHh--hcCHHHHHHHHHHcCCC--cHHHHHHHHHHHhcChHHHHhhc---------CCcHHHHHHHHHHHHHHhcccc
Q 000731 939 TIDLR--LQRFENALKHIVSMGDS--YHADCLNLMKKYAQLFPLGLKLI---------TDPAKMEQVLEAWADHLSDVKC 1005 (1325)
Q Consensus 939 ~Id~~--L~rye~Al~~l~~~g~~--~~d~ale~~~~~~~ly~~AL~L~---------~d~~~~~~i~~~~a~~L~~~~~ 1005 (1325)
.|++| .|+.++|.+.|.++.++ -+...+..+.+| +.+++|+++| .|...+..++. -+...|.
T Consensus 530 Li~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~-G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~----a~~~~g~ 604 (857)
T PLN03077 530 LLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAH-GKGSMAVELFNRMVESGVNPDEVTFISLLC----ACSRSGM 604 (857)
T ss_pred HHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCCCcccHHHHHH----HHhhcCh
Confidence 45555 46788888877776221 145566667788 8888888887 13233444443 2445677
Q ss_pred HHHHHHHHHHcC----------CHHHHHHHHHHcCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000731 1006 FEDAATTYFCCS----------SLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALD 1075 (1325)
Q Consensus 1006 ~~eAa~~y~~ag----------~~ekAl~~y~~ag~W~~al~la~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~ 1075 (1325)
+++|..+|.... -|.--+++|.++|++++|..+...++..++. .+...|...+...++.+.|..+..+
T Consensus 605 v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~--~~~~aLl~ac~~~~~~e~~e~~a~~ 682 (857)
T PLN03077 605 VTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDP--AVWGALLNACRIHRHVELGELAAQH 682 (857)
T ss_pred HHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCH--HHHHHHHHHHHHcCChHHHHHHHHH
Confidence 788887777653 2345567778888888888877776554442 2444455555555555554444322
Q ss_pred h-------cCCHHHHHHHHHHhcCHHHHHHHH
Q 000731 1076 Y-------CGDVTNGISLLIDARDWEEALRVA 1100 (1325)
Q Consensus 1076 y-------l~d~e~Av~~~~~~~~w~eA~rLa 1100 (1325)
- .+-+-.-..+|...++|++|.++-
T Consensus 683 l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr 714 (857)
T PLN03077 683 IFELDPNSVGYYILLCNLYADAGKWDEVARVR 714 (857)
T ss_pred HHhhCCCCcchHHHHHHHHHHCCChHHHHHHH
Confidence 1 123444556788888888887664
No 331
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=96.91 E-value=0.052 Score=74.98 Aligned_cols=182 Identities=13% Similarity=0.087 Sum_probs=110.6
Q ss_pred cCCcccchHhHHHHhcCCc-----hhccccHHHhhcCHHHHHHHHHHcCCCcHH----------------HHHHHHHHHh
Q 000731 915 QRDPKEFLPYLQELESMPP-----LLMRYTIDLRLQRFENALKHIVSMGDSYHA----------------DCLNLMKKYA 973 (1325)
Q Consensus 915 qkDPkeYLpfL~~L~~l~~-----~~~~~~Id~~L~rye~Al~~l~~~g~~~~d----------------~ale~~~~~~ 973 (1325)
+.|+.+=+..++++-++.+ .+.........+++++|+.+|.++-..... +..+.+...
T Consensus 508 ~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~- 586 (1157)
T PRK11447 508 AGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDS- 586 (1157)
T ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHC-
Confidence 3445444555555544421 112223334467788888887765321110 011223556
Q ss_pred cChHHHHhhc-CCcHHHHHHHHHHHHHHhccccHHHHHHHHHHcCCH--------HHHHHHHHHcCCHHHHHHHHhhcC-
Q 000731 974 QLFPLGLKLI-TDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSSL--------EKAMKAYRASGNWSGVLTVAGLLK- 1043 (1325)
Q Consensus 974 ~ly~~AL~L~-~d~~~~~~i~~~~a~~L~~~~~~~eAa~~y~~ag~~--------ekAl~~y~~ag~W~~al~la~~l~- 1043 (1325)
+.+++|++++ ..|.. ..+...+|+.+...+++++|...|.++-.. -....+|...|++++|+.....+.
T Consensus 587 G~~~eA~~~l~~~p~~-~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~ 665 (1157)
T PRK11447 587 GKEAEAEALLRQQPPS-TRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPA 665 (1157)
T ss_pred CCHHHHHHHHHhCCCC-chHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 7788888888 44432 235567889999999999999888876321 233467778888888887666542
Q ss_pred CCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcCC----H---------HHHHHHHHHhcCHHHHHHH
Q 000731 1044 LGKDEVAKLAQELCEELQALGKPGEAAKIALDYCGD----V---------TNGISLLIDARDWEEALRV 1099 (1325)
Q Consensus 1044 ~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~yl~d----~---------e~Av~~~~~~~~w~eA~rL 1099 (1325)
..++. ......+|..+...|++.+|.++|.+-+.. + ..+..+|...+++++|+..
T Consensus 666 ~~p~~-~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~ 733 (1157)
T PRK11447 666 TANDS-LNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALET 733 (1157)
T ss_pred cCCCC-hHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 11222 234556788888899999999988874321 1 1234567788888888866
No 332
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=96.87 E-value=0.1 Score=67.10 Aligned_cols=185 Identities=16% Similarity=0.081 Sum_probs=115.4
Q ss_pred HhcCCcccchHhHHHHhcCCch-----hccccHHHhhcCHHHHHHHHHHc---CCCcH----HHHHHHHHHHhcChHHHH
Q 000731 913 NSQRDPKEFLPYLQELESMPPL-----LMRYTIDLRLQRFENALKHIVSM---GDSYH----ADCLNLMKKYAQLFPLGL 980 (1325)
Q Consensus 913 ~sqkDPkeYLpfL~~L~~l~~~-----~~~~~Id~~L~rye~Al~~l~~~---g~~~~----d~ale~~~~~~~ly~~AL 980 (1325)
..+.|+.+=+..+++.-.+++. .....+...+|+|++|+..|.++ .+++. ..+ .+.... +.|++|+
T Consensus 342 ~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg-~~~~~~-g~~~~A~ 419 (615)
T TIGR00990 342 CLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRA-QLHFIK-GEFAQAG 419 (615)
T ss_pred HHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHHc-CCHHHHH
Confidence 3456777777777777666432 45567777899999999998765 23222 222 233556 7888888
Q ss_pred hhc-----CCcHHHHHHHHHHHHHHhccccHHHHHHHHHHcCC--------HHHHHHHHHHcCCHHHHHHHHhh-cCCCH
Q 000731 981 KLI-----TDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSS--------LEKAMKAYRASGNWSGVLTVAGL-LKLGK 1046 (1325)
Q Consensus 981 ~L~-----~d~~~~~~i~~~~a~~L~~~~~~~eAa~~y~~ag~--------~ekAl~~y~~ag~W~~al~la~~-l~~~~ 1046 (1325)
+.| .+|... ..+..+|..+...+++++|...|.++-. +-..-.+|...|+|++|+....+ +.+.+
T Consensus 420 ~~~~kal~l~P~~~-~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p 498 (615)
T TIGR00990 420 KDYQKSIDLDPDFI-FSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEK 498 (615)
T ss_pred HHHHHHHHcCccCH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Confidence 877 355433 3466788999999999999999998732 11234667788888888654433 11111
Q ss_pred H------HHHHHHHHHHHHHHHcCChHHHHHHHHHhcC-CH------HHHHHHHHHhcCHHHHHHHH
Q 000731 1047 D------EVAKLAQELCEELQALGKPGEAAKIALDYCG-DV------TNGISLLIDARDWEEALRVA 1100 (1325)
Q Consensus 1047 ~------~~~~l~~~la~~L~~~~~~~eAa~i~~~yl~-d~------e~Av~~~~~~~~w~eA~rLa 1100 (1325)
+ .+..+.......+...|++.+|..+|.+-+. ++ .....+|.+.+++++|+...
T Consensus 499 ~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~ 565 (615)
T TIGR00990 499 ETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLF 565 (615)
T ss_pred ccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHH
Confidence 1 1112222233334456889999988877321 21 23455667777888887654
No 333
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=96.86 E-value=0.0034 Score=83.25 Aligned_cols=185 Identities=11% Similarity=0.134 Sum_probs=127.0
Q ss_pred CCEEEEEEccCCCEEEEEECCCcEEEEeCCCC-eE---EEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceee
Q 000731 76 DSITAFDYLMEKEALIVGTSSGLLLLHSVDGN-AT---EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLY 151 (1325)
Q Consensus 76 ~~V~~v~~spdg~~La~as~dG~I~lw~~~~~-~~---e~vg~~~~~I~~~awSPDG~~LA~~s~dgtV~l~s~~~d~~~ 151 (1325)
..|..|.=+|-...-++|+.||.|++|.-..+ .+ ...| ...|+.+.|+.+|.-..++.+||.+-+|...-.+..
T Consensus 2209 ~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g--~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~pk~~~ 2286 (2439)
T KOG1064|consen 2209 ENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAG--NSRVTRSRFNHQGNKFGIVDGDGDLSLWQASPKPYT 2286 (2439)
T ss_pred CceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccC--cchhhhhhhcccCCceeeeccCCceeecccCCccee
Confidence 35777777888889999999999999876543 22 2344 377999999999999999999999999865523222
Q ss_pred eeeccccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECC-CCceeeeecCCCCceeEEEE
Q 000731 152 ENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERD-SGTLQASSELKAFMGAVLEW 230 (1325)
Q Consensus 152 e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~-~G~l~~t~e~~~~~v~~law 230 (1325)
+.. -|+-....+.|=+ ..+| .++.. ..++.+.+||.. .+..-.....|++..+.+++
T Consensus 2287 s~q----------------chnk~~~Df~Fi~--s~~~-tag~s---~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~ 2344 (2439)
T KOG1064|consen 2287 SWQ----------------CHNKALSDFRFIG--SLLA-TAGRS---SDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAY 2344 (2439)
T ss_pred ccc----------------cCCccccceeeee--hhhh-ccccC---CCCCcccchhcccCcccceeeeecCCCceEEEE
Confidence 211 2222334444444 4556 33332 346899999963 23322233568888999999
Q ss_pred ccCCCeEEEEecCCCCCCCCeEEEEeCC-C-ceEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCC
Q 000731 231 MPSGANIAAVYDRKSENKCPSIVFYERN-G-LERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNN 307 (1325)
Q Consensus 231 sPdG~~IAs~~~d~~~~~~~~V~~~e~n-G-l~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~n~ 307 (1325)
-|.-++|.||+++ +.|.+||.- - ++|. | . . |. .-.++..++..+ .++||+++..
T Consensus 2345 ~P~~qllisggr~------G~v~l~D~rqrql~h~-~--------~--~--~~-~~~~f~~~ss~g---~ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2345 APKHQLLISGGRK------GEVCLFDIRQRQLRHT-F--------Q--A--LD-TREYFVTGSSEG---NIKIWRLSEF 2400 (2439)
T ss_pred cCcceEEEecCCc------CcEEEeehHHHHHHHH-h--------h--h--hh-hhheeeccCccc---ceEEEEcccc
Confidence 9999999999985 679999932 1 1221 1 1 1 33 455677888777 8999999864
No 334
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=96.84 E-value=0.011 Score=72.61 Aligned_cols=275 Identities=13% Similarity=0.169 Sum_probs=145.7
Q ss_pred ecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeee-eeccccCCCceeccCccccCCC-CeEEEEEecCCcEEEEee
Q 000731 115 VEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYE-NPLEELAEGFDVHEPELSSSFS-FKSPISWRGDGKYFATLS 192 (1325)
Q Consensus 115 ~~~~I~~~awSPDG~~LA~~s~dgtV~l~s~~~d~~~e-~~l~~~~~~~~Vs~tqf~~~~~-~i~~isWspDG~~lAtvs 192 (1325)
+++++.+++.+|-|+-+|+|+.-|-+.+ +.+ ++.+- ..++.. ..-.|..+||..|.. ..+-|+||+.-.
T Consensus 23 v~~~~~a~si~p~grdi~lAsr~gl~i~-dld-~p~~ppr~l~h~-tpw~vad~qws~h~a~~~wiVsts~qka------ 93 (1081)
T KOG0309|consen 23 VDGGFNAVSINPSGRDIVLASRQGLYII-DLD-DPFTPPRWLHHI-TPWQVADVQWSPHPAKPYWIVSTSNQKA------ 93 (1081)
T ss_pred ecCcccceeeccccchhhhhhhcCeEEE-ecc-CCCCCceeeecc-CcchhcceecccCCCCceeEEecCcchh------
Confidence 4788999999999999999999886544 111 11111 011110 011122334443332 234455555443
Q ss_pred ccccccCCCCEEEEEECC---CCceeeeecCCCCceeEEEEccCCC-eEEEEecCCCCCCCCeEEEEeCCCceEEEEEec
Q 000731 193 EFCNSSKLHKRLKVWERD---SGTLQASSELKAFMGAVLEWMPSGA-NIAAVYDRKSENKCPSIVFYERNGLERSSFDIN 268 (1325)
Q Consensus 193 s~d~~~~~d~~irVWd~~---~G~l~~t~e~~~~~v~~lawsPdG~-~IAs~~~d~~~~~~~~V~~~e~nGl~~~~f~l~ 268 (1325)
-||+.. +.......-+|...+..+.|.|+-. .+|+++.| -.|..|+...-..--+...
T Consensus 94 ------------iiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvd------t~vh~wd~rSp~~p~ys~~ 155 (1081)
T KOG0309|consen 94 ------------IIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVD------TYVHAWDMRSPHRPFYSTS 155 (1081)
T ss_pred ------------hhhhhhcCCccceEEEEecCccceeccccCCCCCcceeecccc------ccceeeeccCCCcceeeee
Confidence 234331 1122223445677788999999865 57888875 3588898543222111111
Q ss_pred cCCCCcEEEEEEcc-CCCeeEEEEccCCCCeEEEEEeeC----CeeEEEeEEEEec----CC-cEEEEEccCCCcEEEEE
Q 000731 269 EQIDSTVELLKWNC-MSDLLAAVVRFEEYDSVKICFFSN----NHWYLKYEIRYLR----RD-GIRFMWHPTKPLQLICW 338 (1325)
Q Consensus 269 ~~~~~~V~~laWSp-Dg~~LAs~~~d~~~~~VqLW~~~n----~~wylkqel~~~~----~~-~~~v~Wsp~~~~~L~~~ 338 (1325)
.- ...-..|+||- |+.+||++-... |.+|+... .+| +|..+...- .. .....|+++...++..|
T Consensus 156 ~w-~s~asqVkwnyk~p~vlasshg~~----i~vwd~r~gs~pl~s-~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw 229 (1081)
T KOG0309|consen 156 SW-RSAASQVKWNYKDPNVLASSHGND----IFVWDLRKGSTPLCS-LKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFW 229 (1081)
T ss_pred cc-cccCceeeecccCcchhhhccCCc----eEEEeccCCCcceEE-ecccceeeehHHHhhhhhhhhcccCCCCceeee
Confidence 11 12355799994 788999886554 99999863 233 343222100 00 13456888888888888
Q ss_pred ecCCcEEEEE-------EEEeee--eCCCeeEEE--EeCCEEEEeecC----CcC---CCCCceeeee-cCCCCEEEEEE
Q 000731 339 TLDGQITTYN-------FIWTTA--VMENSTALV--IDGSKILVTPLS----LSL---MPPPMYLFSL-KFPTAVTEMAF 399 (1325)
Q Consensus 339 ~~~g~~~~~~-------~~~~~~--~~d~~~v~v--iDG~~l~lt~l~----~~~---vPpPm~~~~l-~~~~~V~~VaF 399 (1325)
+.+......+ .+|... |-+.|.+.. ..|+.+.+...+ .|+ .|.|. +++ +|++.|...-|
T Consensus 230 ~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pV--h~F~GH~D~V~eFlW 307 (1081)
T KOG0309|consen 230 DYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPV--HTFVGHDDVVLEFLW 307 (1081)
T ss_pred cccccccccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcce--eeecCcchHHHHHhh
Confidence 7544332211 122221 222232221 223322222111 122 23444 344 57777766555
Q ss_pred ecCCC--------CCEEEEEECCCcEEEEeCCC
Q 000731 400 YSKSS--------KNCLAAILSDGCLCVVDLPA 424 (1325)
Q Consensus 400 Spdg~--------~~~LAs~s~Dgti~lw~~~~ 424 (1325)
-..++ +-.|++=+.|.++++|.++.
T Consensus 308 R~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 308 RKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred hhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 44432 14699999999999999875
No 335
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=96.81 E-value=0.074 Score=65.78 Aligned_cols=138 Identities=15% Similarity=0.085 Sum_probs=88.8
Q ss_pred ccHHHhhcCHHHHHHHHHHc--------CCCcHHHH--HH----HHHHH------hcChHHHHhhc-----CCcHHHHHH
Q 000731 938 YTIDLRLQRFENALKHIVSM--------GDSYHADC--LN----LMKKY------AQLFPLGLKLI-----TDPAKMEQV 992 (1325)
Q Consensus 938 ~~Id~~L~rye~Al~~l~~~--------g~~~~d~a--le----~~~~~------~~ly~~AL~L~-----~d~~~~~~i 992 (1325)
..+..+.|+|++|+..+-.+ |.++..-+ +. ++... -.+|++||.+. .+...+-.+
T Consensus 206 a~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~ 285 (508)
T KOG1840|consen 206 AEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAAT 285 (508)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 36677889999999887654 22222111 11 22233 04555566554 366678888
Q ss_pred HHHHHHHHhccccHHHHHHHHHHcCCHHHH----------------HHHHHHcCCHHHHHH-------HHhhc-CCCHHH
Q 000731 993 LEAWADHLSDVKCFEDAATTYFCCSSLEKA----------------MKAYRASGNWSGVLT-------VAGLL-KLGKDE 1048 (1325)
Q Consensus 993 ~~~~a~~L~~~~~~~eAa~~y~~ag~~ekA----------------l~~y~~ag~W~~al~-------la~~l-~~~~~~ 1048 (1325)
+...|.-+..+|+|++|..++++|-+.-+. ...+...+.+++|.. +.... +.+.-.
T Consensus 286 l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~ 365 (508)
T KOG1840|consen 286 LNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVN 365 (508)
T ss_pred HHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchH
Confidence 999999999999999999999887443222 122333344444433 33322 222225
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000731 1049 VAKLAQELCEELQALGKPGEAAKIALD 1075 (1325)
Q Consensus 1049 ~~~l~~~la~~L~~~~~~~eAa~i~~~ 1075 (1325)
+..+...||+.+..+|+|.||.++|.+
T Consensus 366 ~a~~~~nl~~l~~~~gk~~ea~~~~k~ 392 (508)
T KOG1840|consen 366 LAKIYANLAELYLKMGKYKEAEELYKK 392 (508)
T ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 677899999999999999999999877
No 336
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=96.80 E-value=0.044 Score=60.58 Aligned_cols=128 Identities=13% Similarity=-0.027 Sum_probs=82.7
Q ss_pred CCCEEEEEECCCCceeee-ecCCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeCCCceEEEEEec---cCCCCcE
Q 000731 200 LHKRLKVWERDSGTLQAS-SELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDIN---EQIDSTV 275 (1325)
Q Consensus 200 ~d~~irVWd~~~G~l~~t-~e~~~~~v~~lawsPdG~~IAs~~~d~~~~~~~~V~~~e~nGl~~~~f~l~---~~~~~~V 275 (1325)
.|+++|+.+. +|..... .-...-.+.+++.+|||++.++.++- ..|-+|+... .+++.++ .+.+..-
T Consensus 136 ndht~k~~~~-~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds------~~Vf~y~id~--~sey~~~~~~a~t~D~g 206 (344)
T KOG4532|consen 136 NDHTGKTMVV-SGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDS------RRVFRYAIDD--ESEYIENIYEAPTSDHG 206 (344)
T ss_pred CCcceeEEEE-ecCcccceeeccccceeeeEEcCCCceEEEecCC------CcceEEEeCC--ccceeeeeEecccCCCc
Confidence 3588888888 4443222 11111126899999999999999873 5688887542 2222222 2223445
Q ss_pred EEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeEEEeEEE---EecCCc-EEEEEccCCCcEEEEEec
Q 000731 276 ELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIR---YLRRDG-IRFMWHPTKPLQLICWTL 340 (1325)
Q Consensus 276 ~~laWSpDg~~LAs~~~d~~~~~VqLW~~~n~~wylkqel~---~~~~~~-~~v~Wsp~~~~~L~~~~~ 340 (1325)
...+||......|++..|+ ++-|||+.+..- .-.++. -+++.. ..+.|+|-++.-|...+.
T Consensus 207 F~~S~s~~~~~FAv~~Qdg---~~~I~DVR~~~t-pm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sE 271 (344)
T KOG4532|consen 207 FYNSFSENDLQFAVVFQDG---TCAIYDVRNMAT-PMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISE 271 (344)
T ss_pred eeeeeccCcceEEEEecCC---cEEEEEeccccc-chhhhcccCCCCCCceEEEEecCCCcceEEEEec
Confidence 7889999999999999999 999999986431 111111 111222 778899988776666553
No 337
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=96.79 E-value=0.5 Score=53.53 Aligned_cols=206 Identities=10% Similarity=0.071 Sum_probs=101.4
Q ss_pred CCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeecC-CCCceeEEEEccCCCeEEEEecCCCCCCCCeE
Q 000731 174 SFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSEL-KAFMGAVLEWMPSGANIAAVYDRKSENKCPSI 252 (1325)
Q Consensus 174 ~~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~-~~~~v~~lawsPdG~~IAs~~~d~~~~~~~~V 252 (1325)
+.+..|+|.||+..|++|. +..+.|--.+. +|+++....- ..+-...|++.-+|.++.+..+ .+.+
T Consensus 22 ~e~SGLTy~pd~~tLfaV~------d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er------~~~L 88 (248)
T PF06977_consen 22 DELSGLTYNPDTGTLFAVQ------DEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEER------DQRL 88 (248)
T ss_dssp S-EEEEEEETTTTEEEEEE------TTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETT------TTEE
T ss_pred CCccccEEcCCCCeEEEEE------CCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcC------CCcE
Confidence 3478999999866555365 34578888898 8998876432 1344589999888877665543 3567
Q ss_pred EEEeC--CC--ceE---EEEEeccC--CCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeC---CeeEEEeE---EE-
Q 000731 253 VFYER--NG--LER---SSFDINEQ--IDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSN---NHWYLKYE---IR- 316 (1325)
Q Consensus 253 ~~~e~--nG--l~~---~~f~l~~~--~~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~n---~~wylkqe---l~- 316 (1325)
.+++. ++ ... ..+.+..+ +...+..|+|+|.++.|-++-... -.+|+.+.. ........ +.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~---P~~l~~~~~~~~~~~~~~~~~~~~~~ 165 (248)
T PF06977_consen 89 YIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERK---PKRLYEVNGFPGGFDLFVSDDQDLDD 165 (248)
T ss_dssp EEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESS---SEEEEEEESTT-SS--EEEE-HHHH-
T ss_pred EEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCC---ChhhEEEccccCccceeecccccccc
Confidence 77764 21 111 12333322 334689999999988888876665 466777653 11110000 00
Q ss_pred --EecCCcEEEEEccCCCcEEEEEecCCcEEEEEEEEeeeeCCCeeEEEEeCCEEEEeecCCcCCCCCceeeeecCCCCE
Q 000731 317 --YLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAV 394 (1325)
Q Consensus 317 --~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDG~~l~lt~l~~~~vPpPm~~~~l~~~~~V 394 (1325)
..-.+...+.+||.++. |.+.+......+ .. -.+|+.+...+|....-..+- .+ ...
T Consensus 166 ~~~~~~d~S~l~~~p~t~~-lliLS~es~~l~---~~-----------d~~G~~~~~~~L~~g~~gl~~---~~---~Qp 224 (248)
T PF06977_consen 166 DKLFVRDLSGLSYDPRTGH-LLILSDESRLLL---EL-----------DRQGRVVSSLSLDRGFHGLSK---DI---PQP 224 (248)
T ss_dssp HT--SS---EEEEETTTTE-EEEEETTTTEEE---EE------------TT--EEEEEE-STTGGG-SS---------SE
T ss_pred ccceeccccceEEcCCCCe-EEEEECCCCeEE---EE-----------CCCCCEEEEEEeCCcccCccc---cc---CCc
Confidence 00112366888998876 444443332211 11 124555666666542110000 00 124
Q ss_pred EEEEEecCCCCCEEEEEECCCcEEE
Q 000731 395 TEMAFYSKSSKNCLAAILSDGCLCV 419 (1325)
Q Consensus 395 ~~VaFSpdg~~~~LAs~s~Dgti~l 419 (1325)
-.|||.++| + |-+.+.-+.++.
T Consensus 225 EGIa~d~~G--~-LYIvsEpNlfy~ 246 (248)
T PF06977_consen 225 EGIAFDPDG--N-LYIVSEPNLFYR 246 (248)
T ss_dssp EEEEE-TT-----EEEEETTTEEEE
T ss_pred cEEEECCCC--C-EEEEcCCceEEE
Confidence 578999988 4 444445444443
No 338
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.78 E-value=0.13 Score=58.64 Aligned_cols=147 Identities=16% Similarity=0.089 Sum_probs=87.5
Q ss_pred CEEEEEEccCCCEEEEEE--CCC-cEEEEeCCCCeEEEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEe--ecCceee
Q 000731 77 SITAFDYLMEKEALIVGT--SSG-LLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMT--HDWDLLY 151 (1325)
Q Consensus 77 ~V~~v~~spdg~~La~as--~dG-~I~lw~~~~~~~e~vg~~~~~I~~~awSPDG~~LA~~s~dgtV~l~s--~~~d~~~ 151 (1325)
.+.+.+.|+||+.+|... .++ .+.++...+....... ...+...+|+|||.+.+...++....++. ..... .
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~--g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~-~ 101 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLT--GGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTG-E 101 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeecc--CCccccccccCCCCEEEEEcCCCceEEEEecCCCcc-e
Confidence 689999999999998877 333 3444544443222222 24789999999999988888777666552 11111 1
Q ss_pred eeeccccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEE--CC-CCceeee------ecCCC
Q 000731 152 ENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWE--RD-SGTLQAS------SELKA 222 (1325)
Q Consensus 152 e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd--~~-~G~l~~t------~e~~~ 222 (1325)
...+... .....|..+.|||||..+|.+.. + .+++.|.|=- ++ +|..... .....
T Consensus 102 ~~~v~~~------------~~~~~I~~l~vSpDG~RvA~v~~-~---~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~ 165 (253)
T PF10647_consen 102 PVEVDWP------------GLRGRITALRVSPDGTRVAVVVE-D---GGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLL 165 (253)
T ss_pred eEEeccc------------ccCCceEEEEECCCCcEEEEEEe-c---CCCCeEEEEEEEeCCCCCcceeccceEeccccc
Confidence 1111110 11126799999999999994442 2 2235555532 21 4411111 11223
Q ss_pred CceeEEEEccCCCeEEEEec
Q 000731 223 FMGAVLEWMPSGANIAAVYD 242 (1325)
Q Consensus 223 ~~v~~lawsPdG~~IAs~~~ 242 (1325)
..+.+++|.+++.+++.+..
T Consensus 166 ~~v~~v~W~~~~~L~V~~~~ 185 (253)
T PF10647_consen 166 SDVTDVAWSDDSTLVVLGRS 185 (253)
T ss_pred CcceeeeecCCCEEEEEeCC
Confidence 45689999999998776654
No 339
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=96.77 E-value=1.9 Score=51.79 Aligned_cols=98 Identities=12% Similarity=0.152 Sum_probs=61.9
Q ss_pred CCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEEEeCCCCeEE
Q 000731 31 EQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATE 110 (1325)
Q Consensus 31 ~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~V~~v~~spdg~~La~as~dG~I~lw~~~~~~~e 110 (1325)
.++.||+++.++.++.+|. .+++..|+.. ++.. + ...+ ..++..+.+++.+|.+.-+|..++++.
T Consensus 64 ~~~~v~v~~~~g~v~a~d~--~tG~~~W~~~-~~~~-----~--~~~p-----~v~~~~v~v~~~~g~l~ald~~tG~~~ 128 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDA--ETGKRLWRVD-LDER-----L--SGGV-----GADGGLVFVGTEKGEVIALDAEDGKEL 128 (377)
T ss_pred ECCEEEEECCCCeEEEEEc--cCCcEeeeec-CCCC-----c--ccce-----EEcCCEEEEEcCCCEEEEEECCCCcEe
Confidence 3789999999888999998 6888777653 1211 1 1111 235678888889999999999876653
Q ss_pred EeceecCcEEEEEEcCCCCeEEEEeCCccEEEEe
Q 000731 111 VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMT 144 (1325)
Q Consensus 111 ~vg~~~~~I~~~awSPDG~~LA~~s~dgtV~l~s 144 (1325)
-.-...+.+.+.-.- ++..+..++.++.|..++
T Consensus 129 W~~~~~~~~~~~p~v-~~~~v~v~~~~g~l~a~d 161 (377)
T TIGR03300 129 WRAKLSSEVLSPPLV-ANGLVVVRTNDGRLTALD 161 (377)
T ss_pred eeeccCceeecCCEE-ECCEEEEECCCCeEEEEE
Confidence 111112223221111 345667777888887776
No 340
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=96.73 E-value=0.3 Score=59.13 Aligned_cols=200 Identities=12% Similarity=0.079 Sum_probs=126.6
Q ss_pred ceeEEeeecCCCEEEEEeC-CCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEEC---CC
Q 000731 22 ILQFSALDIEQNRLFFASS-ANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTS---SG 97 (1325)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~-~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~V~~v~~spdg~~La~as~---dG 97 (1325)
.....++++++..+|.... ++.|...|. .+... ... ...+..+..+++.|+++.+.++.. ++
T Consensus 75 ~p~~i~v~~~~~~vyv~~~~~~~v~vid~--~~~~~---~~~---------~~vG~~P~~~~~~~~~~~vYV~n~~~~~~ 140 (381)
T COG3391 75 YPAGVAVNPAGNKVYVTTGDSNTVSVIDT--ATNTV---LGS---------IPVGLGPVGLAVDPDGKYVYVANAGNGNN 140 (381)
T ss_pred cccceeeCCCCCeEEEecCCCCeEEEEcC--cccce---eeE---------eeeccCCceEEECCCCCEEEEEecccCCc
Confidence 4567888999999999865 355777775 23221 111 111447889999999998888776 68
Q ss_pred cEEEEeCCCCeEE---EeceecCcEEEEEEcCCCCeEEEEe-CCccEEEEeecCceeeeeeccccCCCceeccCccccCC
Q 000731 98 LLLLHSVDGNATE---VVGRVEGGVRFISPSPDGDLLGVTT-GFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSF 173 (1325)
Q Consensus 98 ~I~lw~~~~~~~e---~vg~~~~~I~~~awSPDG~~LA~~s-~dgtV~l~s~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~ 173 (1325)
+|.+.|..+.++- -+|. .+ ..++++|||+.+..+. .+++|.+.+-....+.+ ... ...+ +..
T Consensus 141 ~vsvid~~t~~~~~~~~vG~--~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~---~~~--~~~~------~~~ 206 (381)
T COG3391 141 TVSVIDAATNKVTATIPVGN--TP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR---GSV--GSLV------GVG 206 (381)
T ss_pred eEEEEeCCCCeEEEEEecCC--Cc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec---ccc--cccc------ccC
Confidence 8888888876543 3332 23 7899999999666665 67788775422222211 000 0001 111
Q ss_pred CCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeecCCCC-ceeEEEEccCCCeEEEEecCCCCCCCCeE
Q 000731 174 SFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAF-MGAVLEWMPSGANIAAVYDRKSENKCPSI 252 (1325)
Q Consensus 174 ~~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~~-~v~~lawsPdG~~IAs~~~d~~~~~~~~V 252 (1325)
..-..+.|+|||+++- +.-.. ..++++.+.|..++.....-.+... ....++..|+|+.+-+.... .+.|
T Consensus 207 ~~P~~i~v~~~g~~~y-V~~~~---~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~-----~~~V 277 (381)
T COG3391 207 TGPAGIAVDPDGNRVY-VANDG---SGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQ-----GGTV 277 (381)
T ss_pred CCCceEEECCCCCEEE-EEecc---CCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecC-----CCeE
Confidence 2347899999999654 33211 2236888899878877766333333 45678999999998877553 2466
Q ss_pred EEEeCC
Q 000731 253 VFYERN 258 (1325)
Q Consensus 253 ~~~e~n 258 (1325)
.+.+..
T Consensus 278 ~vid~~ 283 (381)
T COG3391 278 SVIDGA 283 (381)
T ss_pred EEEeCC
Confidence 666643
No 341
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=96.70 E-value=0.046 Score=61.25 Aligned_cols=184 Identities=11% Similarity=0.027 Sum_probs=112.4
Q ss_pred eEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccC-CCEEEEEECCCcEEEE
Q 000731 24 QFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLME-KEALIVGTSSGLLLLH 102 (1325)
Q Consensus 24 ~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~V~~v~~spd-g~~La~as~dG~I~lw 102 (1325)
..+.|++-+..+|+.-+++.+-.++.+ ....-++.+ .+.|.+ ..+-.+|+-. -+.+.+|+.||.+.-|
T Consensus 125 lslD~~~~~~~i~vs~s~G~~~~v~~t---~~~le~vq~----wk~He~----E~Wta~f~~~~pnlvytGgDD~~l~~~ 193 (339)
T KOG0280|consen 125 LSLDISTSGTKIFVSDSRGSISGVYET---EMVLEKVQT----WKVHEF----EAWTAKFSDKEPNLVYTGGDDGSLSCW 193 (339)
T ss_pred eEEEeeccCceEEEEcCCCcEEEEecc---eeeeeeccc----ccccce----eeeeeecccCCCceEEecCCCceEEEE
Confidence 345566777777777666655544441 111001111 344544 5666777653 3677899999999999
Q ss_pred eCCC-Ce-E-EEeceecCcEEEEEEcC-CCCeEEEEeCCccEEEEe-e-cCceeeeeeccccCCCceeccCccccCCCCe
Q 000731 103 SVDG-NA-T-EVVGRVEGGVRFISPSP-DGDLLGVTTGFGQILVMT-H-DWDLLYENPLEELAEGFDVHEPELSSSFSFK 176 (1325)
Q Consensus 103 ~~~~-~~-~-e~vg~~~~~I~~~awSP-DG~~LA~~s~dgtV~l~s-~-~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i 176 (1325)
|..- +. + .....|..||.++.=|| ++..||+|+-|.+|.+|+ | -.+|+....+ .++|
T Consensus 194 D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v-----------------~GGV 256 (339)
T KOG0280|consen 194 DIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKV-----------------GGGV 256 (339)
T ss_pred EecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCcc-----------------ccce
Confidence 9872 22 2 22334788999998876 588999999999998875 2 2333333222 2689
Q ss_pred EEEEEecCCc--EEEEeeccccccCCCCEEEEEECC--CCc---eeeeecCCCCceeEEEEccCCCeEEEEecC
Q 000731 177 SPISWRGDGK--YFATLSEFCNSSKLHKRLKVWERD--SGT---LQASSELKAFMGAVLEWMPSGANIAAVYDR 243 (1325)
Q Consensus 177 ~~isWspDG~--~lAtvss~d~~~~~d~~irVWd~~--~G~---l~~t~e~~~~~v~~lawsPdG~~IAs~~~d 243 (1325)
++|.|+|--. .+|++- + +-++|-+.+ -++ .+.+...|+++...-.|..--..||+++.-
T Consensus 257 WRi~~~p~~~~~lL~~CM-h-------~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFY 322 (339)
T KOG0280|consen 257 WRIKHHPEIFHRLLAACM-H-------NGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFY 322 (339)
T ss_pred EEEEecchhhhHHHHHHH-h-------cCceEEEecccccchheeeeccccccceeeccccccccceeeeeecc
Confidence 9999999644 344132 2 123333332 233 333445577777777885555679998763
No 342
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=96.70 E-value=9.2e-05 Score=86.78 Aligned_cols=156 Identities=13% Similarity=0.062 Sum_probs=130.6
Q ss_pred chhccccHHHhhcCHHHHHHHHHHcCCCcHHHHHHHHHHHhcChHHHHhhc--CCcHHHHHHHHHHHHHHhccccHHHHH
Q 000731 933 PLLMRYTIDLRLQRFENALKHIVSMGDSYHADCLNLMKKYAQLFPLGLKLI--TDPAKMEQVLEAWADHLSDVKCFEDAA 1010 (1325)
Q Consensus 933 ~~~~~~~Id~~L~rye~Al~~l~~~g~~~~d~ale~~~~~~~ly~~AL~L~--~d~~~~~~i~~~~a~~L~~~~~~~eAa 1010 (1325)
.++--..++--+.+|++|.+++.+... .-+|++|..+. .|+.|+-+. .+|.++..+-..|++.|+..+.+..+.
T Consensus 47 ~nlavaca~tiv~~YD~agq~~le~n~--tg~aldm~wDk--egdvlavlAek~~piylwd~n~eytqqLE~gg~~s~sl 122 (615)
T KOG2247|consen 47 HNLAVACANTIVIYYDKAGQVILELNP--TGKALDMAWDK--EGDVLAVLAEKTGPIYLWDVNSEYTQQLESGGTSSKSL 122 (615)
T ss_pred CceehhhhhhHHHhhhhhcceecccCC--chhHhhhhhcc--ccchhhhhhhcCCCeeechhhhhhHHHHhccCcchHHH
Confidence 467777888889999999999999965 79999999885 899999988 899999999999999999999999999
Q ss_pred HHHHHcCCH------HHHH--------HHHHHcC-CHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000731 1011 TTYFCCSSL------EKAM--------KAYRASG-NWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALD 1075 (1325)
Q Consensus 1011 ~~y~~ag~~------ekAl--------~~y~~ag-~W~~al~la~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~ 1075 (1325)
..|++.+.. ++-+ +.-...| +.|+..++|..+. + ..+..+++..|...+++.||+.+|..
T Consensus 123 l~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lE-d----~vil~dcd~~L~v~~qegeta~ltev 197 (615)
T KOG2247|consen 123 LAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLE-D----YVILCDCDNTLSVTTQEGETASLTEV 197 (615)
T ss_pred HhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEeccc-c----eeeecCcHHHHHHhhhccceeeeeec
Confidence 999987532 2222 3334445 6777777776643 2 35778999999999999999999999
Q ss_pred hcCCHHHHHHHHHHhcCHHHHHH
Q 000731 1076 YCGDVTNGISLLIDARDWEEALR 1098 (1325)
Q Consensus 1076 yl~d~e~Av~~~~~~~~w~eA~r 1098 (1325)
.+.++.|--.|.+.+.|..|=.
T Consensus 198 -ggepdnm~~~y~k~n~w~kage 219 (615)
T KOG2247|consen 198 -GGEPDNMDFFYGKVNGWGKAGE 219 (615)
T ss_pred -cCccchhhhheeeeeccccccc
Confidence 9999999999999999988743
No 343
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.66 E-value=0.017 Score=68.62 Aligned_cols=129 Identities=20% Similarity=0.287 Sum_probs=92.0
Q ss_pred cHHHHHHHHHhccC------hhHHHHHHHHhcCCcccchHhHHHHhcCCc-----hhccccHHHhhcCHHHHHHHHHHcC
Q 000731 890 DSEAVYEAALGLYD------LNLAAIVALNSQRDPKEFLPYLQELESMPP-----LLMRYTIDLRLQRFENALKHIVSMG 958 (1325)
Q Consensus 890 d~n~Ly~~ALg~YD------~~lal~VAq~sqkDPkeYLpfL~~L~~l~~-----~~~~~~Id~~L~rye~Al~~l~~~g 958 (1325)
++-..++.|..+-- +.++++.|++ -||-+|..+++.-.++++ .+.|..|.--|+.|+.|+.-|-++-
T Consensus 344 ~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~--~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai 421 (606)
T KOG0547|consen 344 GAQEDFDAAIKLDPAFNSLYIKRAAAYADE--NQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAI 421 (606)
T ss_pred hhhhhHHHHHhcCcccchHHHHHHHHHhhh--hccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHh
Confidence 66678888877643 2445555554 578889999999998843 6888999999999999999998874
Q ss_pred ---CC----cHHHHHHHHHHHhcChHHHHhhc-CCc---HHHHHHHHHHHHHHhccccHHHHHHHHHHcCCHHHH
Q 000731 959 ---DS----YHADCLNLMKKYAQLFPLGLKLI-TDP---AKMEQVLEAWADHLSDVKCFEDAATTYFCCSSLEKA 1022 (1325)
Q Consensus 959 ---~~----~~d~ale~~~~~~~ly~~AL~L~-~d~---~~~~~i~~~~a~~L~~~~~~~eAa~~y~~ag~~ekA 1022 (1325)
++ +.+.|.-.++.| -+..++..| .-. ....+++..+|+-|-++++|.+|..+|..|-..+.-
T Consensus 422 ~L~pe~~~~~iQl~~a~Yr~~--k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~ 494 (606)
T KOG0547|consen 422 SLDPENAYAYIQLCCALYRQH--KIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPR 494 (606)
T ss_pred hcChhhhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccc
Confidence 22 235555555444 344555555 100 124568889999999999999999999998766543
No 344
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.63 E-value=0.34 Score=59.18 Aligned_cols=189 Identities=16% Similarity=0.061 Sum_probs=96.2
Q ss_pred CCEEEEEEccCCCEEEEEECCCcEEEEeCCCCe-------EEEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCc
Q 000731 76 DSITAFDYLMEKEALIVGTSSGLLLLHSVDGNA-------TEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWD 148 (1325)
Q Consensus 76 ~~V~~v~~spdg~~La~as~dG~I~lw~~~~~~-------~e~vg~~~~~I~~~awSPDG~~LA~~s~dgtV~l~s~~~d 148 (1325)
+.|+++.|..+ +.|++...||.++++|..+.. ++..+-.+..|.+..+..+| +|..++++.+.+-+..-+
T Consensus 81 ~~iv~~~wt~~-e~LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~~G--ivvLt~~~~~~~v~n~~~ 157 (410)
T PF04841_consen 81 GRIVGMGWTDD-EELVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYKNG--IVVLTGNNRFYVVNNIDE 157 (410)
T ss_pred CCEEEEEECCC-CeEEEEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCCCC--EEEECCCCeEEEEeCccc
Confidence 78999999985 566677899999999997654 11222222333333334355 555667777755432111
Q ss_pred eeeeeeccccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeecCCCCceeEE
Q 000731 149 LLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVL 228 (1325)
Q Consensus 149 ~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~~~v~~l 228 (1325)
+.....+.... .. .+.++.+........++.++...+..+ . +..+.+-+....+. . ...+.+..+
T Consensus 158 ~~~~~~~~~~p--~~--~~~~~~~~~~~~i~~l~~~~~~~i~~~-~------g~~i~~i~~~~~~~---i-~~~~~i~~i 222 (410)
T PF04841_consen 158 PVKLRRLPEIP--GL--WTKFHWWPSWTVIPLLSSDRVVEILLA-N------GETIYIIDENSFKQ---I-DSDGPIIKI 222 (410)
T ss_pred cchhhccccCC--Cc--ccccccccccccceEeecCcceEEEEe-c------CCEEEEEEcccccc---c-cCCCCeEEE
Confidence 21111111100 00 001111111111145666666555222 1 24555333312111 1 124578999
Q ss_pred EEccCCCeEEEEecCCCCCCCCeEEEEeCCC-ceEEEEEeccCCCCcEEEEEEccCCCeeEEE
Q 000731 229 EWMPSGANIAAVYDRKSENKCPSIVFYERNG-LERSSFDINEQIDSTVELLKWNCMSDLLAAV 290 (1325)
Q Consensus 229 awsPdG~~IAs~~~d~~~~~~~~V~~~e~nG-l~~~~f~l~~~~~~~V~~laWSpDg~~LAs~ 290 (1325)
+.||+|+.||.-..+ +.+.+...+= ....++.+. .......+.|.-+..++..+
T Consensus 223 avSpng~~iAl~t~~------g~l~v~ssDf~~~~~e~~~~--~~~~p~~~~WCG~dav~l~~ 277 (410)
T PF04841_consen 223 AVSPNGKFIALFTDS------GNLWVVSSDFSEKLCEFDTD--SKSPPKQMAWCGNDAVVLSW 277 (410)
T ss_pred EECCCCCEEEEEECC------CCEEEEECcccceeEEeecC--cCCCCcEEEEECCCcEEEEe
Confidence 999999999988764 3454444321 122333332 12356688887776555444
No 345
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.63 E-value=0.0064 Score=73.88 Aligned_cols=80 Identities=21% Similarity=0.428 Sum_probs=61.4
Q ss_pred ecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeeeccccCCCceeccCccccCCCCeEEEEEecCCcEEEEeecc
Q 000731 115 VEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEF 194 (1325)
Q Consensus 115 ~~~~I~~~awSPDG~~LA~~s~dgtV~l~s~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~ 194 (1325)
...+|.-+.|+|-=+++|+++.+|.|.+---.|.-+-.++.+... ...+++|+|||+.+| ++..
T Consensus 19 l~~~i~~~ewnP~~dLiA~~t~~gelli~R~n~qRlwtip~p~~~---------------v~~sL~W~~DGklla-Vg~k 82 (665)
T KOG4640|consen 19 LPINIKRIEWNPKMDLIATRTEKGELLIHRLNWQRLWTIPIPGEN---------------VTASLCWRPDGKLLA-VGFK 82 (665)
T ss_pred cccceEEEEEcCccchhheeccCCcEEEEEeccceeEeccCCCCc---------------cceeeeecCCCCEEE-EEec
Confidence 346789999999999999999999988754446555555544332 125999999999999 8853
Q ss_pred ccccCCCCEEEEEECCCCceee
Q 000731 195 CNSSKLHKRLKVWERDSGTLQA 216 (1325)
Q Consensus 195 d~~~~~d~~irVWd~~~G~l~~ 216 (1325)
||+|++-|.+.|..+.
T Consensus 83 ------dG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 83 ------DGTIRLHDVEKGGRLV 98 (665)
T ss_pred ------CCeEEEEEccCCCcee
Confidence 5899999997776544
No 346
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=96.50 E-value=0.077 Score=73.35 Aligned_cols=158 Identities=11% Similarity=-0.038 Sum_probs=100.6
Q ss_pred cccHHHhhcCHHHHHHHHHHc---CCC----cHHHHHHHHHHHhcChHHHHhhc-----CCcHHHHHHHHHHHHHHhccc
Q 000731 937 RYTIDLRLQRFENALKHIVSM---GDS----YHADCLNLMKKYAQLFPLGLKLI-----TDPAKMEQVLEAWADHLSDVK 1004 (1325)
Q Consensus 937 ~~~Id~~L~rye~Al~~l~~~---g~~----~~d~ale~~~~~~~ly~~AL~L~-----~d~~~~~~i~~~~a~~L~~~~ 1004 (1325)
...+....|+|++|+..|.++ .++ ++..+. .+... +.|++|+..+ .+|. .......+|.++...+
T Consensus 467 ~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~-~~~~~-G~~~~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~ 543 (1157)
T PRK11447 467 QAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQ-DLRQA-GQRSQADALMRRLAQQKPN-DPEQVYAYGLYLSGSD 543 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH-HHHHc-CCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCC
Confidence 334455678999999988875 222 123343 34566 7888888876 2333 2344556788888899
Q ss_pred cHHHHHHHHHHcCCH------------------HHHHHHHHHcCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCCh
Q 000731 1005 CFEDAATTYFCCSSL------------------EKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKP 1066 (1325)
Q Consensus 1005 ~~~eAa~~y~~ag~~------------------ekAl~~y~~ag~W~~al~la~~l~~~~~~~~~l~~~la~~L~~~~~~ 1066 (1325)
++++|...+.++-.- -...++|...|+.++|+.+.+..+.+ ..+...+|..+.+.|++
T Consensus 544 ~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~----~~~~~~La~~~~~~g~~ 619 (1157)
T PRK11447 544 RDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPS----TRIDLTLADWAQQRGDY 619 (1157)
T ss_pred CHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCC----chHHHHHHHHHHHcCCH
Confidence 999998888765321 12235677778888888777654422 23455678888888888
Q ss_pred HHHHHHHHHhcC----CH---HHHHHHHHHhcCHHHHHHHHH
Q 000731 1067 GEAAKIALDYCG----DV---TNGISLLIDARDWEEALRVAF 1101 (1325)
Q Consensus 1067 ~eAa~i~~~yl~----d~---e~Av~~~~~~~~w~eA~rLa~ 1101 (1325)
++|..+|.+-+. ++ -....+|...+++++|+....
T Consensus 620 ~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~ 661 (1157)
T PRK11447 620 AAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLA 661 (1157)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 888888776432 11 123455667777777765544
No 347
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=96.47 E-value=4.9 Score=52.23 Aligned_cols=344 Identities=17% Similarity=0.116 Sum_probs=169.6
Q ss_pred CCCCEEEEEEccCCCEEEEEECCCcEEEEeCCCCeEEEece--ecCcEEEEEEcCCCC------eEEEEeCCccEEEEee
Q 000731 74 PGDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATEVVGR--VEGGVRFISPSPDGD------LLGVTTGFGQILVMTH 145 (1325)
Q Consensus 74 ~~~~V~~v~~spdg~~La~as~dG~I~lw~~~~~~~e~vg~--~~~~I~~~awSPDG~------~LA~~s~dgtV~l~s~ 145 (1325)
|.+.++...-+.+.-++++|+.++.+.......+.+..+.+ .+..|.|+.+||-|+ ++|+|..+.++.+.+.
T Consensus 486 ~p~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~ 565 (1096)
T KOG1897|consen 486 PPGKITIGVVSANASQVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTF 565 (1096)
T ss_pred CCCceEEEEEeecceEEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEE
Confidence 33455555556666688888877777766665443332222 357799999998643 7888888877766554
Q ss_pred cCceeeee--eccccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEE--EEECCCCceeeeecCC
Q 000731 146 DWDLLYEN--PLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLK--VWERDSGTLQASSELK 221 (1325)
Q Consensus 146 ~~d~~~e~--~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~ir--VWd~~~G~l~~t~e~~ 221 (1325)
.-|..... .+....- .-.+.--.+-+|+.||- ++. ++|.+. +.|..+|++...-..+
T Consensus 566 ~pd~~~~~~~~l~~~~i------------PRSIl~~~~e~d~~yLl-val------gdG~l~~fv~d~~tg~lsd~Kk~~ 626 (1096)
T KOG1897|consen 566 LPDLILITHEQLSGEII------------PRSILLTTFEGDIHYLL-VAL------GDGALLYFVLDINTGQLSDRKKVT 626 (1096)
T ss_pred CCCcceeeeeccCCCcc------------chheeeEEeeccceEEE-EEc------CCceEEEEEEEcccceEccccccc
Confidence 33322111 1111000 12345566778888888 764 346554 4566577664432211
Q ss_pred C--CceeEEEEccCC-CeEEEEecCCCCCCCCeEEEEeCCCceEEEEEeccCCCCcEEEEEEccC--CCeeEEEEccCCC
Q 000731 222 A--FMGAVLEWMPSG-ANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCM--SDLLAAVVRFEEY 296 (1325)
Q Consensus 222 ~--~~v~~lawsPdG-~~IAs~~~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpD--g~~LAs~~~d~~~ 296 (1325)
- .++.--.|+-.+ +.+-++++. +.+ +|--||..+-. .+..+.-..+ ..||.| .+-||++..+.
T Consensus 627 lGt~P~~Lr~f~sk~~t~vfa~sdr------P~v-iY~~n~kLv~s-pls~kev~~~--c~f~s~a~~d~l~~~~~~~-- 694 (1096)
T KOG1897|consen 627 LGTQPISLRTFSSKSRTAVFALSDR------PTV-IYSSNGKLVYS-PLSLKEVNHM--CPFNSDAYPDSLASANGGA-- 694 (1096)
T ss_pred cCCCCcEEEEEeeCCceEEEEeCCC------CEE-EEecCCcEEEe-ccchHHhhhh--cccccccCCceEEEecCCc--
Confidence 1 222333455544 344445543 345 45556644321 1111111112 224433 34577766554
Q ss_pred CeEEEEEeeCCeeEEEeEEEEecCCcEEEEEccCCCcEEEEEecCCcEEEEEEEEeeeeCCCeeEEEEeCCEEEEeecCC
Q 000731 297 DSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSL 376 (1325)
Q Consensus 297 ~~VqLW~~~n~~wylkqel~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDG~~l~lt~l~~ 376 (1325)
+++-+++.-.-...+++..+ ..+..+++++. .+++.+.+..+... .-... .......+.|.|.++..+..+..
T Consensus 695 --l~i~tid~iqkl~irtvpl~-~~prrI~~q~~-sl~~~v~s~r~e~~--~~~~~-ee~~~s~l~vlD~nTf~vl~~he 767 (1096)
T KOG1897|consen 695 --LTIGTIDEIQKLHIRTVPLG-ESPRRICYQES-SLTFGVLSNRIESS--AEYYG-EEYEVSFLRVLDQNTFEVLSSHE 767 (1096)
T ss_pred --eEEEEecchhhcceeeecCC-CChhheEeccc-ceEEEEEecccccc--hhhcC-CcceEEEEEEecCCceeEEeecc
Confidence 88888765321112232221 12255667763 34444544222111 10000 01223467788888866543321
Q ss_pred cCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEEC----------CCcEEEEeCCCCCccccccCCceeEeeeccccc
Q 000731 377 SLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILS----------DGCLCVVDLPAPDMLEDLEGTEFVVEACISETA 446 (1325)
Q Consensus 377 ~~vPpPm~~~~l~~~~~V~~VaFSpdg~~~~LAs~s~----------Dgti~lw~~~~~~~~~~~~g~~~~~~~~~~~~~ 446 (1325)
- .+. +.-..|.++.|..|. +..+++|+. .|.|.++.......+ .+.... .-
T Consensus 768 f-~~~-------E~~~Si~s~~~~~d~-~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L--------~~v~e~--~v 828 (1096)
T KOG1897|consen 768 F-ERN-------ETALSIISCKFTDDP-NTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSL--------ELVAET--VV 828 (1096)
T ss_pred c-ccc-------ceeeeeeeeeecCCC-ceEEEEEEEeeccCCCCcccceEEEEEEecCCce--------eeeeee--ee
Confidence 0 111 112246677798885 277888753 355555555431111 111100 00
Q ss_pred cCcEEEEEEecCCeEEEEEecCCCCceEEEEee
Q 000731 447 FGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGAT 479 (1325)
Q Consensus 447 ~~~v~~l~~~~d~~lla~~~~~~~~~~~~~~~~ 479 (1325)
.+.+..+.-. +|++||.- +++++++...
T Consensus 829 ~Gav~aL~~f-ngkllA~I----n~~vrLye~t 856 (1096)
T KOG1897|consen 829 KGAVYALVEF-NGKLLAGI----NQSVRLYEWT 856 (1096)
T ss_pred ccceeehhhh-CCeEEEec----CcEEEEEEcc
Confidence 1234444333 56777632 3678888774
No 348
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.46 E-value=0.46 Score=55.89 Aligned_cols=83 Identities=22% Similarity=0.320 Sum_probs=65.7
Q ss_pred HHHHHHcCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcCCHHHHHHHHHHhcCHHHHHHHHHh
Q 000731 1023 MKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCGDVTNGISLLIDARDWEEALRVAFM 1102 (1325)
Q Consensus 1023 l~~y~~ag~W~~al~la~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~yl~d~e~Av~~~~~~~~w~eA~rLa~~ 1102 (1325)
+++|...++|+++...|.. +-+| -=+.-.++.+...|...+|....-+ +.+ ++-|++|++.++|.+|...|.+
T Consensus 215 i~aLa~~~~w~eL~~fa~s-kKsP----IGyepFv~~~~~~~~~~eA~~yI~k-~~~-~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 215 IKALAENKDWDELEKFAKS-KKSP----IGYEPFVEACLKYGNKKEASKYIPK-IPD-EERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHHHHhcCCHHHHHHHHhC-CCCC----CChHHHHHHHHHCCCHHHHHHHHHh-CCh-HHHHHHHHHCCCHHHHHHHHHH
Confidence 3788888999999888864 2232 1144567788889999998876556 888 9999999999999999999999
Q ss_pred cCCchhHHHH
Q 000731 1103 HRREDLITKV 1112 (1325)
Q Consensus 1103 ~~~~dL~e~v 1112 (1325)
.+..+.+..|
T Consensus 288 ~kd~~~L~~i 297 (319)
T PF04840_consen 288 EKDIDLLKQI 297 (319)
T ss_pred cCCHHHHHHH
Confidence 9877777653
No 349
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=96.45 E-value=1.8 Score=51.70 Aligned_cols=246 Identities=16% Similarity=0.066 Sum_probs=108.1
Q ss_pred EeeecCCCEEEEEeC---CCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEEE
Q 000731 26 SALDIEQNRLFFASS---ANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLH 102 (1325)
Q Consensus 26 ~~~d~~~~~l~~~s~---~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~V~~v~~spdg~~La~as~dG~I~lw 102 (1325)
-+|..|++.|.++|+ ..++|..|+ .+++ +.+|-.+ +++...+...+|+++.|+-...+.+|+-.
T Consensus 41 ~~ft~dG~kllF~s~~dg~~nly~lDL--~t~~----i~QLTdg-------~g~~~~g~~~s~~~~~~~Yv~~~~~l~~v 107 (386)
T PF14583_consen 41 NCFTDDGRKLLFASDFDGNRNLYLLDL--ATGE----ITQLTDG-------PGDNTFGGFLSPDDRALYYVKNGRSLRRV 107 (386)
T ss_dssp --B-TTS-EEEEEE-TTSS-EEEEEET--TT-E----EEE---S-------S-B-TTT-EE-TTSSEEEEEETTTEEEEE
T ss_pred CCcCCCCCEEEEEeccCCCcceEEEEc--ccCE----EEECccC-------CCCCccceEEecCCCeEEEEECCCeEEEE
Confidence 478999999999887 448999999 6665 3443322 11112234568999998776667788889
Q ss_pred eCCCCeEEEecee-cCcEEEEEEc--CCCCeEEEEeCCccEEEEeecCceee------------------eeeccccC--
Q 000731 103 SVDGNATEVVGRV-EGGVRFISPS--PDGDLLGVTTGFGQILVMTHDWDLLY------------------ENPLEELA-- 159 (1325)
Q Consensus 103 ~~~~~~~e~vg~~-~~~I~~~awS--PDG~~LA~~s~dgtV~l~s~~~d~~~------------------e~~l~~~~-- 159 (1325)
|++|.+.+.+=.+ ++.+-...|+ .|+..+|-+-... .+|.+.. .+.+.+..
T Consensus 108 dL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~------~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~ 181 (386)
T PF14583_consen 108 DLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISR------EDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERK 181 (386)
T ss_dssp ETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEG------GG-----SHHHHHHHHHC---EEEEEEETTT--EE
T ss_pred ECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEee------hhccCccccHHHHHHHhhCCCceEEEEECCCCcee
Confidence 9999765433222 3445457774 4566655432111 1121111 11111110
Q ss_pred ----CCceec----------------cCccccCCCCe----------------------EEEEEecCCcEEEEeeccccc
Q 000731 160 ----EGFDVH----------------EPELSSSFSFK----------------------SPISWRGDGKYFATLSEFCNS 197 (1325)
Q Consensus 160 ----~~~~Vs----------------~tqf~~~~~~i----------------------~~isWspDG~~lAtvss~d~~ 197 (1325)
+..++. |.-++.-+.++ ..=-|.|||..+...+...+
T Consensus 182 ~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~- 260 (386)
T PF14583_consen 182 VVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPG- 260 (386)
T ss_dssp EEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETT-
T ss_pred EEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCC-
Confidence 000111 11111111122 22359999998875554221
Q ss_pred cCCCCEEEEEECCCCceeeeecCCCCceeEEEEccCCCeEEEEecCCCC----------CCCCeEEEEeCCCceEEEEE-
Q 000731 198 SKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSE----------NKCPSIVFYERNGLERSSFD- 266 (1325)
Q Consensus 198 ~~~d~~irVWd~~~G~l~~t~e~~~~~v~~lawsPdG~~IAs~~~d~~~----------~~~~~V~~~e~nGl~~~~f~- 266 (1325)
+.++.|.=.|..+|+-....+ .+ ....+--+|||+++|.=+.|... .....|.+|+..........
T Consensus 261 -~~~~~i~~~d~~t~~~~~~~~-~p-~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~ 337 (386)
T PF14583_consen 261 -GQDFWIAGYDPDTGERRRLME-MP-WCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLAR 337 (386)
T ss_dssp -T--EEEEEE-TTT--EEEEEE-E--SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE
T ss_pred -CCceEEEeeCCCCCCceEEEe-CC-ceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeee
Confidence 335677778887776443222 11 23456668999998765443210 11234555665433322111
Q ss_pred ------e-ccCCCCcEEEEEEccCCCeeEEEEccC
Q 000731 267 ------I-NEQIDSTVELLKWNCMSDLLAAVVRFE 294 (1325)
Q Consensus 267 ------l-~~~~~~~V~~laWSpDg~~LAs~~~d~ 294 (1325)
+ ..+....=....|||||+.+.-.+.-.
T Consensus 338 h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~ 372 (386)
T PF14583_consen 338 HDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDME 372 (386)
T ss_dssp -------BTTBSSTT----EE-TTSSEEEEEE-TT
T ss_pred ccCcceeecCCCccCCCCCccCCCCCEEEEECCCC
Confidence 1 111111124689999999988877654
No 350
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.42 E-value=2.2 Score=49.80 Aligned_cols=226 Identities=16% Similarity=0.164 Sum_probs=105.6
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEE
Q 000731 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1325)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~V~~v~~spdg~~La~as~dG~I~l 101 (1325)
.+.+++|. +.+.-|.+...+.|++-.- -+ ..|....++.+ . + ..-...+|.|.. .+. .+++..| +.+
T Consensus 18 ~l~dV~F~-d~~~G~~VG~~g~il~T~D---GG-~tW~~~~~~~~--~-~--~~~~l~~I~f~~-~~g-~ivG~~g-~ll 84 (302)
T PF14870_consen 18 PLLDVAFV-DPNHGWAVGAYGTILKTTD---GG-KTWQPVSLDLD--N-P--FDYHLNSISFDG-NEG-WIVGEPG-LLL 84 (302)
T ss_dssp -EEEEEES-SSS-EEEEETTTEEEEESS---TT-SS-EE-----S----------EEEEEEEET-TEE-EEEEETT-EEE
T ss_pred ceEEEEEe-cCCEEEEEecCCEEEEECC---CC-ccccccccCCC--c-c--ceeeEEEEEecC-Cce-EEEcCCc-eEE
Confidence 67778887 6667777777776765432 22 23554322211 0 0 012467787754 344 4455566 445
Q ss_pred EeCCCC-eEEEec---eecCcEEEEEEcCCCCeEEEEeCCccEEEEe---ecCceeeeeeccccCCCceeccCccccCCC
Q 000731 102 HSVDGN-ATEVVG---RVEGGVRFISPSPDGDLLGVTTGFGQILVMT---HDWDLLYENPLEELAEGFDVHEPELSSSFS 174 (1325)
Q Consensus 102 w~~~~~-~~e~vg---~~~~~I~~~awSPDG~~LA~~s~dgtV~l~s---~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~ 174 (1325)
...+++ ..+.+. ..++....+..-.++ ....++..|.|..=+ +.|..+..- ...
T Consensus 85 ~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~-~~~l~~~~G~iy~T~DgG~tW~~~~~~------------------~~g 145 (302)
T PF14870_consen 85 HTTDGGKTWERVPLSSKLPGSPFGITALGDG-SAELAGDRGAIYRTTDGGKTWQAVVSE------------------TSG 145 (302)
T ss_dssp EESSTTSS-EE----TT-SS-EEEEEEEETT-EEEEEETT--EEEESSTTSSEEEEE-S---------------------
T ss_pred EecCCCCCcEEeecCCCCCCCeeEEEEcCCC-cEEEEcCCCcEEEeCCCCCCeeEcccC------------------Ccc
Confidence 555654 344321 223333333333443 444456666664321 234332211 113
Q ss_pred CeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeecCCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEE
Q 000731 175 FKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVF 254 (1325)
Q Consensus 175 ~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~~~v~~lawsPdG~~IAs~~~d~~~~~~~~V~~ 254 (1325)
.+..+.-++||+|+| +++. ...++-||.-...-..........+.++.|+|+|++...+ + ...|.+
T Consensus 146 s~~~~~r~~dG~~va-vs~~------G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~------Gg~~~~ 211 (302)
T PF14870_consen 146 SINDITRSSDGRYVA-VSSR------GNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-R------GGQIQF 211 (302)
T ss_dssp -EEEEEE-TTS-EEE-EETT------SSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-T------TTEEEE
T ss_pred eeEeEEECCCCcEEE-EECc------ccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-C------CcEEEE
Confidence 567788899999999 7742 2566778762212222233345678999999999987765 3 245655
Q ss_pred EeCCCceEEEEEec---c-CCCCcEEEEEEccCCCeeEEEEccC
Q 000731 255 YERNGLERSSFDIN---E-QIDSTVELLKWNCMSDLLAAVVRFE 294 (1325)
Q Consensus 255 ~e~nGl~~~~f~l~---~-~~~~~V~~laWSpDg~~LAs~~~d~ 294 (1325)
=+ .+....+|.-+ . .....+.+++|.+++++.|++....
T Consensus 212 s~-~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~ 254 (302)
T PF14870_consen 212 SD-DPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSGT 254 (302)
T ss_dssp EE--TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT-
T ss_pred cc-CCCCccccccccCCcccCceeeEEEEecCCCCEEEEeCCcc
Confidence 55 22222333221 1 1223589999999999999887543
No 351
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=96.40 E-value=0.92 Score=54.52 Aligned_cols=227 Identities=10% Similarity=0.049 Sum_probs=112.4
Q ss_pred CCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEEEeCCCCeEE
Q 000731 31 EQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATE 110 (1325)
Q Consensus 31 ~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~V~~v~~spdg~~La~as~dG~I~lw~~~~~~~e 110 (1325)
+++.+|+++.++.++.+|. .+++..|+.. ++ +.+.+.-.. .+..+.+++.+|.|..||..++++.
T Consensus 104 ~~~~v~v~~~~g~l~ald~--~tG~~~W~~~-~~-----------~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~ 168 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDA--EDGKELWRAK-LS-----------SEVLSPPLV-ANGLVVVRTNDGRLTALDAATGERL 168 (377)
T ss_pred cCCEEEEEcCCCEEEEEEC--CCCcEeeeec-cC-----------ceeecCCEE-ECCEEEEECCCCeEEEEEcCCCcee
Confidence 4688999888888999998 6788767643 11 111111011 2456777788999999999876542
Q ss_pred -EeceecCcE------EEEEEcCCCCeEEEEeCCccEEEEe-ecCceeeeeeccccCCCceeccCccccCCCCeEEEEEe
Q 000731 111 -VVGRVEGGV------RFISPSPDGDLLGVTTGFGQILVMT-HDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWR 182 (1325)
Q Consensus 111 -~vg~~~~~I------~~~awSPDG~~LA~~s~dgtV~l~s-~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWs 182 (1325)
.... .... .+.... + ..+.+++.++.+..++ +++..+-+...........+ ........+...
T Consensus 169 W~~~~-~~~~~~~~~~~sp~~~-~-~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~-----~~~~~~~~~p~~- 239 (377)
T TIGR03300 169 WTYSR-VTPALTLRGSASPVIA-D-GGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTEL-----ERLVDVDGDPVV- 239 (377)
T ss_pred eEEcc-CCCceeecCCCCCEEE-C-CEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCch-----hhhhccCCccEE-
Confidence 1111 1111 011111 2 3566666677776554 22222211111100000000 000000011111
Q ss_pred cCCcEEEEeeccccccCCCCEEEEEECCCCceeeeecCCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeC-CCce
Q 000731 183 GDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYER-NGLE 261 (1325)
Q Consensus 183 pDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~~~v~~lawsPdG~~IAs~~~d~~~~~~~~V~~~e~-nGl~ 261 (1325)
.+|..++ ++ .++.+..||..+|+.....+. ... .. ...+|..|..++.+ +.|..++. +|..
T Consensus 240 ~~~~vy~-~~-------~~g~l~a~d~~tG~~~W~~~~-~~~-~~--p~~~~~~vyv~~~~------G~l~~~d~~tG~~ 301 (377)
T TIGR03300 240 DGGQVYA-VS-------YQGRVAALDLRSGRVLWKRDA-SSY-QG--PAVDDNRLYVTDAD------GVVVALDRRSGSE 301 (377)
T ss_pred ECCEEEE-EE-------cCCEEEEEECCCCcEEEeecc-CCc-cC--ceEeCCEEEEECCC------CeEEEEECCCCcE
Confidence 1454444 32 247899999989988776542 111 11 12345666555543 46777775 4533
Q ss_pred EEEE-EeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCC
Q 000731 262 RSSF-DINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNN 307 (1325)
Q Consensus 262 ~~~f-~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~n~ 307 (1325)
.-++ .+. ...+.+.. ..|..|.+++.++ .|.+|+..+.
T Consensus 302 ~W~~~~~~---~~~~ssp~--i~g~~l~~~~~~G---~l~~~d~~tG 340 (377)
T TIGR03300 302 LWKNDELK---YRQLTAPA--VVGGYLVVGDFEG---YLHWLSREDG 340 (377)
T ss_pred EEcccccc---CCccccCE--EECCEEEEEeCCC---EEEEEECCCC
Confidence 2221 111 11111111 2466788888887 7889887654
No 352
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=96.31 E-value=0.11 Score=65.54 Aligned_cols=141 Identities=13% Similarity=0.074 Sum_probs=111.4
Q ss_pred HHHHHHHHHHHhc-ChHHHHhhc-----CCcHHHHHHHHHHHHHHhc---cccHHHHHHHHHHcCCHHHHHHHHHH----
Q 000731 962 HADCLNLMKKYAQ-LFPLGLKLI-----TDPAKMEQVLEAWADHLSD---VKCFEDAATTYFCCSSLEKAMKAYRA---- 1028 (1325)
Q Consensus 962 ~d~ale~~~~~~~-ly~~AL~L~-----~d~~~~~~i~~~~a~~L~~---~~~~~eAa~~y~~ag~~ekAl~~y~~---- 1028 (1325)
.+..++++..+-+ .|+.+-++- .+.+.++.+++..|..-.. .++..+++++|..+|+-.-....|+.
T Consensus 353 qe~Ll~~~~~~~~~~W~~~r~~gv~~W~~~~~~Lr~~~E~iAr~~~~~~~~~dp~~~al~YlAl~Kk~vL~~L~k~a~~~ 432 (631)
T PF12234_consen 353 QEELLSLVPPQIKLSWEEARELGVGFWLRSIESLRSQFEKIARNEFQKNDTKDPSDCALFYLALGKKKVLAGLWKMASWH 432 (631)
T ss_pred HHHHHHHhhhhccCCHHHHHhhCCEEeecCHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHhccHHHHHHHHHhhhcc
Confidence 5778888877623 699987764 6779999999999975554 47888999999999998766677773
Q ss_pred cCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcCCHHHHHHHHH-HhcCHHHHHHHHHhcCC
Q 000731 1029 SGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCGDVTNGISLLI-DARDWEEALRVAFMHRR 1105 (1325)
Q Consensus 1029 ag~W~~al~la~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~yl~d~e~Av~~~~-~~~~w~eA~rLa~~~~~ 1105 (1325)
.++=+.+--++. +.++++.+.-|.+=|=.|..+++|..||..|+- +|+++.||..++ +.++..=|+.+|..+..
T Consensus 433 ~~~~k~~~Fl~n--dF~~~rwr~AAlKNAyaLlsk~Ry~~AAaFFLL-ag~l~dAv~V~~~~l~D~qLAi~i~Rl~e~ 507 (631)
T PF12234_consen 433 KEQQKMAKFLSN--DFTEPRWRTAALKNAYALLSKHRYEYAAAFFLL-AGSLKDAVNVCLRQLNDPQLAIAIARLYEG 507 (631)
T ss_pred cccHHHHHHHhh--cCCChHHHHHHHHhHHHHHhcccHHHHHHHHHh-cccHHHHHHHHHHHccChhHHHHHHHHHcC
Confidence 333333333333 446677788888999999999999999999999 999999999999 56999999999988764
No 353
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=96.29 E-value=0.085 Score=67.58 Aligned_cols=128 Identities=20% Similarity=0.190 Sum_probs=85.1
Q ss_pred hcChHHHHhhc---CCcHHHHHHHHHHHHHHhccccHHHHHHHHHHcCCHHHHHHHHHHcCCHHHHHHHHhh---cCCCH
Q 000731 973 AQLFPLGLKLI---TDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGL---LKLGK 1046 (1325)
Q Consensus 973 ~~ly~~AL~L~---~d~~~~~~i~~~~a~~L~~~~~~~eAa~~y~~ag~~ekAl~~y~~ag~W~~al~la~~---l~~~~ 1046 (1325)
|++.++=+.|. .+++..+.|.+.-|+.++++|++++|..+|..||+|+++++.....- .+++..... ..-..
T Consensus 394 ~G~i~~~~~Li~~~~~~~~~~~i~~~~A~~~e~~g~~~dAi~Ly~La~~~d~vl~lln~~L--s~~l~~~~~~~~~~s~~ 471 (613)
T PF04097_consen 394 PGLIERRLSLIKFDDDEDFLREIIEQAAREAEERGRFEDAILLYHLAEEYDKVLSLLNRLL--SQVLSQPSSSSLSDSER 471 (613)
T ss_dssp E-HHHHTGGGGT-SSSSHHHHHHHHHHHHHHHHCT-HHHHHHHHHHTT-HHHHHHHHHHHH--HHHHHCSSTSSSSSTTT
T ss_pred cceeeccccccCCCCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHhhHHHHHHHHHHHH--HHHHcCccccccccchh
Confidence 35566655665 46788999999999999999999999999999999999999986553 223321111 00123
Q ss_pred HHHHHHHHHHHHHHHHcCCh-----HHHHHHHHHhcCCHHHHHHHHHHhcCHHHHHHHHHhcC
Q 000731 1047 DEVAKLAQELCEELQALGKP-----GEAAKIALDYCGDVTNGISLLIDARDWEEALRVAFMHR 1104 (1325)
Q Consensus 1047 ~~~~~l~~~la~~L~~~~~~-----~eAa~i~~~yl~d~e~Av~~~~~~~~w~eA~rLa~~~~ 1104 (1325)
+++..++..+.+.+...+.. ..+...+.. |-++-++-..|-.+ +|++|+....+-+
T Consensus 472 ~~l~~la~~i~~~y~~~~~~~~~~~~~~~~t~~~-Ll~L~~ff~~~~~g-~~~~AL~~i~~L~ 532 (613)
T PF04097_consen 472 ERLIELAKEILERYKSNPHISSKVSRKNRETFQL-LLDLAEFFDLYHAG-QYEQALDIIEKLD 532 (613)
T ss_dssp TSHHHHHHHHHHHHTTSHHHHTTS-HHHHHHHHH-HHHHHHHHHHHHTT--HHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHhCcchHhhccHHHHHHHHH-HHHHHHHHHHHHcC-CHHHHHHHHHhCC
Confidence 56678888888888765443 233333333 55666666665544 7999998776643
No 354
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=96.29 E-value=1.6 Score=49.81 Aligned_cols=228 Identities=19% Similarity=0.206 Sum_probs=127.0
Q ss_pred eeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEEEeCCC
Q 000731 27 ALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSVDG 106 (1325)
Q Consensus 27 ~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~V~~v~~spdg~~La~as~dG~I~lw~~~~ 106 (1325)
+.+..++.|+++++++ ++.++.. ......++. ....|..+...|+-+.|++-+ ||.+.+++++.
T Consensus 2 c~~~~~~~L~vGt~~G-l~~~~~~--~~~~~~~i~------------~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~ 65 (275)
T PF00780_consen 2 CADSWGDRLLVGTEDG-LYVYDLS--DPSKPTRIL------------KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDS 65 (275)
T ss_pred CcccCCCEEEEEECCC-EEEEEec--CCccceeEe------------ecceEEEEEEecccCEEEEEc-CCccEEEEchh
Confidence 3466789999999988 8888872 211111111 112499999999988877664 69999999864
Q ss_pred CeE-E---------------EeceecCcEEEEE---EcCCCCeEEEEeCCccEEEEeec-----C-ceeeeeeccccCCC
Q 000731 107 NAT-E---------------VVGRVEGGVRFIS---PSPDGDLLGVTTGFGQILVMTHD-----W-DLLYENPLEELAEG 161 (1325)
Q Consensus 107 ~~~-e---------------~vg~~~~~I~~~a---wSPDG~~LA~~s~dgtV~l~s~~-----~-d~~~e~~l~~~~~~ 161 (1325)
-.. . .+.. ..++...+ -...+..|+.+.. .+|.++... | ....|..+.
T Consensus 66 l~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~f~~~~~~~~~~~L~va~k-k~i~i~~~~~~~~~f~~~~ke~~lp----- 138 (275)
T PF00780_consen 66 LEPVSTSAPLAFPKSRSLPTKLPE-TKGVSFFAVNGGHEGSRRLCVAVK-KKILIYEWNDPRNSFSKLLKEISLP----- 138 (275)
T ss_pred hccccccccccccccccccccccc-cCCeeEEeeccccccceEEEEEEC-CEEEEEEEECCcccccceeEEEEcC-----
Confidence 111 0 1111 23455544 3334455555554 478776432 2 333444333
Q ss_pred ceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeecCCCCc-----------eeEEEE
Q 000731 162 FDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFM-----------GAVLEW 230 (1325)
Q Consensus 162 ~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~~~-----------v~~law 230 (1325)
+.+..++|.+ ..++ ++. .+.+.+.|..+|............ ...+--
T Consensus 139 ------------~~~~~i~~~~--~~i~-v~~-------~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 196 (275)
T PF00780_consen 139 ------------DPPSSIAFLG--NKIC-VGT-------SKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQ 196 (275)
T ss_pred ------------CCcEEEEEeC--CEEE-EEe-------CCceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEE
Confidence 3558999994 4455 543 256888888777765544221111 112222
Q ss_pred ccCCCeEEEEecCCCCCCCCeEEEEeCCCceEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeE
Q 000731 231 MPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWY 310 (1325)
Q Consensus 231 sPdG~~IAs~~~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~n~~wy 310 (1325)
-+++.+|.+... .-.|.+.+|...+...+.-. ....++++ ...+|...+.+ .|.+|++.+..
T Consensus 197 ~~~~e~Ll~~~~--------~g~fv~~~G~~~r~~~i~W~--~~p~~~~~--~~pyli~~~~~----~iEV~~~~~~~-- 258 (275)
T PF00780_consen 197 LSDNEFLLCYDN--------IGVFVNKNGEPSRKSTIQWS--SAPQSVAY--SSPYLIAFSSN----SIEVRSLETGE-- 258 (275)
T ss_pred eCCceEEEEecc--------eEEEEcCCCCcCcccEEEcC--CchhEEEE--ECCEEEEECCC----EEEEEECcCCc--
Confidence 234666665322 34466777765432222211 12345555 23466555554 59999999875
Q ss_pred EEeEEEE
Q 000731 311 LKYEIRY 317 (1325)
Q Consensus 311 lkqel~~ 317 (1325)
+.|.+..
T Consensus 259 lvQ~i~~ 265 (275)
T PF00780_consen 259 LVQTIPL 265 (275)
T ss_pred EEEEEEC
Confidence 4666654
No 355
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.26 E-value=0.17 Score=58.60 Aligned_cols=28 Identities=21% Similarity=0.185 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHh
Q 000731 1049 VAKLAQELCEELQALGKPGEAAKIALDY 1076 (1325)
Q Consensus 1049 ~~~l~~~la~~L~~~~~~~eAa~i~~~y 1076 (1325)
.......+|..+...++|.+|..+|.+.
T Consensus 154 a~~~~~~~A~l~~~l~~y~~A~~~~e~~ 181 (282)
T PF14938_consen 154 AAECLLKAADLYARLGRYEEAIEIYEEV 181 (282)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3456777888888888899988888773
No 356
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=96.26 E-value=0.92 Score=53.12 Aligned_cols=128 Identities=13% Similarity=0.170 Sum_probs=72.0
Q ss_pred CcEEEEeCCCCeEEEeceecCc-EEEEEEcCCCCeEEEEeC----------CccEEEEe-ecCceeeeeeccccCCCcee
Q 000731 97 GLLLLHSVDGNATEVVGRVEGG-VRFISPSPDGDLLGVTTG----------FGQILVMT-HDWDLLYENPLEELAEGFDV 164 (1325)
Q Consensus 97 G~I~lw~~~~~~~e~vg~~~~~-I~~~awSPDG~~LA~~s~----------dgtV~l~s-~~~d~~~e~~l~~~~~~~~V 164 (1325)
+.|.++|.+++++ .|-++.| .-.+..||||+.+.+++. ..-|.+|+ ..-.+..|+.+.... .
T Consensus 17 ~rv~viD~d~~k~--lGmi~~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~--R-- 90 (342)
T PF06433_consen 17 SRVYVIDADSGKL--LGMIDTGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKP--R-- 90 (342)
T ss_dssp EEEEEEETTTTEE--EEEEEEESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS---B--
T ss_pred ceEEEEECCCCcE--EEEeecccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcc--h--
Confidence 3678888887765 3333332 334678999999998753 22466665 445566677665431 0
Q ss_pred ccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeecCCCCceeEEEEccCCCeEEEEecC
Q 000731 165 HEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDR 243 (1325)
Q Consensus 165 s~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~~~v~~lawsPdG~~IAs~~~d 243 (1325)
++. -.....++.|+||+++. +--..| ...|-|-|...++.....+ .+|-..-.-+.|+| +++.+.|
T Consensus 91 ----~~~-~~~~~~~~ls~dgk~~~-V~N~TP----a~SVtVVDl~~~kvv~ei~-~PGC~~iyP~~~~~--F~~lC~D 156 (342)
T PF06433_consen 91 ----AQV-VPYKNMFALSADGKFLY-VQNFTP----ATSVTVVDLAAKKVVGEID-TPGCWLIYPSGNRG--FSMLCGD 156 (342)
T ss_dssp ------B-S--GGGEEE-TTSSEEE-EEEESS----SEEEEEEETTTTEEEEEEE-GTSEEEEEEEETTE--EEEEETT
T ss_pred ----hee-cccccceEEccCCcEEE-EEccCC----CCeEEEEECCCCceeeeec-CCCEEEEEecCCCc--eEEEecC
Confidence 000 01234578899999887 554433 3689999997777765433 34433333344433 4444444
No 357
>PRK02888 nitrous-oxide reductase; Validated
Probab=96.20 E-value=0.17 Score=63.29 Aligned_cols=178 Identities=11% Similarity=0.045 Sum_probs=106.6
Q ss_pred EEEccCCCEEEEEE-CCCcEEEEeCCCCeEE-EeceecCcEEEEEEcCCCCeEEEEeCC----ccEEEEeecCceeeeee
Q 000731 81 FDYLMEKEALIVGT-SSGLLLLHSVDGNATE-VVGRVEGGVRFISPSPDGDLLGVTTGF----GQILVMTHDWDLLYENP 154 (1325)
Q Consensus 81 v~~spdg~~La~as-~dG~I~lw~~~~~~~e-~vg~~~~~I~~~awSPDG~~LA~~s~d----gtV~l~s~~~d~~~e~~ 154 (1325)
+=++|||+.+...+ ..+.+..+|.++.++. .+ .+++.-..++++|||+++.+.+.+ +++..|+.
T Consensus 198 ~PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV-~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a--------- 267 (635)
T PRK02888 198 IPLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQV-MVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMA--------- 267 (635)
T ss_pred cccCCCCCEeecccceeEEEEEEECccceEEEEE-EeCCCcccceECCCCCEEEEeccCcccCcceeeecc---------
Confidence 44567887664332 2355666787775442 11 123455678999999999888632 23333321
Q ss_pred ccccCCCceeccCccccCCCCeEEE------EEecCCcEEEEeeccccccCCCCEEEEEECCC----C-ceeeeecCCCC
Q 000731 155 LEELAEGFDVHEPELSSSFSFKSPI------SWRGDGKYFATLSEFCNSSKLHKRLKVWERDS----G-TLQASSELKAF 223 (1325)
Q Consensus 155 l~~~~~~~~Vs~tqf~~~~~~i~~i------sWspDG~~lAtvss~d~~~~~d~~irVWd~~~----G-~l~~t~e~~~~ 223 (1325)
... +.+..+ .+.+||++.- ++ +++|.|.|..+ | +.... -+...
T Consensus 268 -~e~---------------d~~vvfni~~iea~vkdGK~~~-V~--------gn~V~VID~~t~~~~~~~v~~y-IPVGK 321 (635)
T PRK02888 268 -AER---------------DWVVVFNIARIEEAVKAGKFKT-IG--------GSKVPVVDGRKAANAGSALTRY-VPVPK 321 (635)
T ss_pred -ccC---------------ceEEEEchHHHHHhhhCCCEEE-EC--------CCEEEEEECCccccCCcceEEE-EECCC
Confidence 111 111222 3346888765 53 26899999866 3 23322 23444
Q ss_pred ceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeCCCce-------------EEEEEeccCCCCcEEEEEEccCCCeeEEE
Q 000731 224 MGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLE-------------RSSFDINEQIDSTVELLKWNCMSDLLAAV 290 (1325)
Q Consensus 224 ~v~~lawsPdG~~IAs~~~d~~~~~~~~V~~~e~nGl~-------------~~~f~l~~~~~~~V~~laWSpDg~~LAs~ 290 (1325)
..+.+++||||+++.+++.. .++|.+.|..-.. ..+..+ ...-...+|.++|....+-
T Consensus 322 sPHGV~vSPDGkylyVankl-----S~tVSVIDv~k~k~~~~~~~~~~~~vvaevev----GlGPLHTaFDg~G~aytsl 392 (635)
T PRK02888 322 NPHGVNTSPDGKYFIANGKL-----SPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL----GLGPLHTAFDGRGNAYTTL 392 (635)
T ss_pred CccceEECCCCCEEEEeCCC-----CCcEEEEEChhhhhhhhccCCccceEEEeecc----CCCcceEEECCCCCEEEeE
Confidence 45889999999999888764 4678888754322 111111 1123467899999877777
Q ss_pred EccCCCCeEEEEEeeC
Q 000731 291 VRFEEYDSVKICFFSN 306 (1325)
Q Consensus 291 ~~d~~~~~VqLW~~~n 306 (1325)
.-|. .|--|++..
T Consensus 393 f~ds---qv~kwn~~~ 405 (635)
T PRK02888 393 FLDS---QIVKWNIEA 405 (635)
T ss_pred eecc---eeEEEehHH
Confidence 7777 788899764
No 358
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.17 E-value=0.079 Score=64.50 Aligned_cols=152 Identities=18% Similarity=0.197 Sum_probs=105.0
Q ss_pred cHHHhhcCHHHHHHHHHHcCCCcH---------------HHHHHHHHHHhcChHHHHhhcCCcHHHHHHHHHHHHHHhcc
Q 000731 939 TIDLRLQRFENALKHIVSMGDSYH---------------ADCLNLMKKYAQLFPLGLKLITDPAKMEQVLEAWADHLSDV 1003 (1325)
Q Consensus 939 ~Id~~L~rye~Al~~l~~~g~~~~---------------d~ale~~~~~~~ly~~AL~L~~d~~~~~~i~~~~a~~L~~~ 1003 (1325)
.|-.-+++|+.|+.-|.++-..+. +--+++..++ |++||++- | .....+...|.-|.+.
T Consensus 260 nV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~---Ykral~~~--P-~F~~Ay~NlanALkd~ 333 (966)
T KOG4626|consen 260 NVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDT---YKRALELQ--P-NFPDAYNNLANALKDK 333 (966)
T ss_pred HHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHH---HHHHHhcC--C-CchHHHhHHHHHHHhc
Confidence 455566778888888877532221 2225666677 88888764 2 3455667778899999
Q ss_pred ccHHHHHHHHHHcC----CHHHHH----HHHHHcCCHHHHHHHHhh-cCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHH
Q 000731 1004 KCFEDAATTYFCCS----SLEKAM----KAYRASGNWSGVLTVAGL-LKLGKDEVAKLAQELCEELQALGKPGEAAKIAL 1074 (1325)
Q Consensus 1004 ~~~~eAa~~y~~ag----~~ekAl----~~y~~ag~W~~al~la~~-l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~ 1074 (1325)
|+..||..+|.+|- ++..|+ .+|.+.|..++|..+-.. +... .+...-...||..++++|++.+|..+|.
T Consensus 334 G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~Yk 412 (966)
T KOG4626|consen 334 GSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYK 412 (966)
T ss_pred cchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHH
Confidence 99999999998763 445555 567777877777554332 1111 1344566778899999999999988876
Q ss_pred Hh--------------------cCCHHHHHHHHHHhcCHHHHH
Q 000731 1075 DY--------------------CGDVTNGISLLIDARDWEEAL 1097 (1325)
Q Consensus 1075 ~y--------------------l~d~e~Av~~~~~~~~w~eA~ 1097 (1325)
+- .||+.+|+.+|-++=+..-|+
T Consensus 413 ealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~ 455 (966)
T KOG4626|consen 413 EALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTF 455 (966)
T ss_pred HHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHH
Confidence 52 488999999998887655554
No 359
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=96.17 E-value=0.28 Score=60.92 Aligned_cols=109 Identities=17% Similarity=0.164 Sum_probs=82.2
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEE
Q 000731 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1325)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~V~~v~~spdg~~La~as~dG~I~l 101 (1325)
.+...++|.-.+.+.++++.+.+|.++- ..++. .+ ++.+- ..+.++....|++...+|.|+++|.|.+
T Consensus 35 ~v~lTc~dst~~~l~~GsS~G~lyl~~R--~~~~~--~~--~~~~~------~~~~~~~~~vs~~e~lvAagt~~g~V~v 102 (726)
T KOG3621|consen 35 RVKLTCVDATEEYLAMGSSAGSVYLYNR--HTGEM--RK--LKNEG------ATGITCVRSVSSVEYLVAAGTASGRVSV 102 (726)
T ss_pred eEEEEEeecCCceEEEecccceEEEEec--Cchhh--hc--ccccC------ccceEEEEEecchhHhhhhhcCCceEEe
Confidence 6777899999999999999999999987 45543 11 11110 1245777888999999999999999999
Q ss_pred EeCCCCe---EEEe----ceecCcEEEEEEcCCCCeEEEEeCCccEEE
Q 000731 102 HSVDGNA---TEVV----GRVEGGVRFISPSPDGDLLGVTTGFGQILV 142 (1325)
Q Consensus 102 w~~~~~~---~e~v----g~~~~~I~~~awSPDG~~LA~~s~dgtV~l 142 (1325)
+-++.+. ...+ ..|...|+|++||+||..|-+|...|+|.+
T Consensus 103 ~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~ 150 (726)
T KOG3621|consen 103 FQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVL 150 (726)
T ss_pred ehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEE
Confidence 8765421 1122 224678999999999999999999999865
No 360
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.16 E-value=3.1 Score=50.94 Aligned_cols=51 Identities=16% Similarity=0.084 Sum_probs=37.5
Q ss_pred cEEEEeCCCCeEEEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCce
Q 000731 98 LLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDL 149 (1325)
Q Consensus 98 ~I~lw~~~~~~~e~vg~~~~~I~~~awSPDG~~LA~~s~dgtV~l~s~~~d~ 149 (1325)
.|.+|+..|..+..+.--.+.|.++.|+.+ +.|+++..||++.+.+..++.
T Consensus 62 ~I~iys~sG~ll~~i~w~~~~iv~~~wt~~-e~LvvV~~dG~v~vy~~~G~~ 112 (410)
T PF04841_consen 62 SIQIYSSSGKLLSSIPWDSGRIVGMGWTDD-EELVVVQSDGTVRVYDLFGEF 112 (410)
T ss_pred EEEEECCCCCEeEEEEECCCCEEEEEECCC-CeEEEEEcCCEEEEEeCCCce
Confidence 499999999776533221378999999986 667788899999887644343
No 361
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=96.16 E-value=0.87 Score=50.49 Aligned_cols=219 Identities=11% Similarity=0.005 Sum_probs=110.3
Q ss_pred CCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEEEeCCCCeEEEeceecCcEE
Q 000731 41 ANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATEVVGRVEGGVR 120 (1325)
Q Consensus 41 ~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~V~~v~~spdg~~La~as~dG~I~lw~~~~~~~e~vg~~~~~I~ 120 (1325)
++.|..||+ .+++..|+.. +.. + .+..... ..+++..+.+++.+|.|..||..++++.-.-...+.+.
T Consensus 2 ~g~l~~~d~--~tG~~~W~~~-----~~~-~---~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~ 69 (238)
T PF13360_consen 2 DGTLSALDP--RTGKELWSYD-----LGP-G---IGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPIS 69 (238)
T ss_dssp TSEEEEEET--TTTEEEEEEE-----CSS-S---CSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGG
T ss_pred CCEEEEEEC--CCCCEEEEEE-----CCC-C---CCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeecccccc
Confidence 456777777 5666666653 210 0 1222222 34466777788899999999998876531111112111
Q ss_pred EEEEcCCCCeEEEEeCCccEEEEe-ecCceeeeeeccccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccC
Q 000731 121 FISPSPDGDLLGVTTGFGQILVMT-HDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSK 199 (1325)
Q Consensus 121 ~~awSPDG~~LA~~s~dgtV~l~s-~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~ 199 (1325)
..- ..++..+.+++.++.|..++ .+++.+-.......+. ..+ ......+.. |..++ ++.
T Consensus 70 ~~~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~-~~~---------~~~~~~~~~--~~~~~-~~~------ 129 (238)
T PF13360_consen 70 GAP-VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPP-AGV---------RSSSSPAVD--GDRLY-VGT------ 129 (238)
T ss_dssp SGE-EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCT-CST---------B--SEEEEE--TTEEE-EEE------
T ss_pred cee-eecccccccccceeeeEecccCCcceeeeeccccccc-ccc---------ccccCceEe--cCEEE-EEe------
Confidence 111 33556667777777777766 5555544421111110 000 011222222 55554 332
Q ss_pred CCCEEEEEECCCCceeeeecCCCCc-----------eeEEEEccCCCeEEEEecCCCCCCCCeEEEEe-CCCceEEEEEe
Q 000731 200 LHKRLKVWERDSGTLQASSELKAFM-----------GAVLEWMPSGANIAAVYDRKSENKCPSIVFYE-RNGLERSSFDI 267 (1325)
Q Consensus 200 ~d~~irVWd~~~G~l~~t~e~~~~~-----------v~~lawsPdG~~IAs~~~d~~~~~~~~V~~~e-~nGl~~~~f~l 267 (1325)
.++.|..+|..+|+.+......... ...+.+. +| .|..++.+ ...+.+ + .+|... +..
T Consensus 130 ~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~v~~~~~~-----g~~~~~-d~~tg~~~--w~~ 199 (238)
T PF13360_consen 130 SSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVIS-DG-RVYVSSGD-----GRVVAV-DLATGEKL--WSK 199 (238)
T ss_dssp TCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECC-TT-EEEEECCT-----SSEEEE-ETTTTEEE--EEE
T ss_pred ccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEE-CC-EEEEEcCC-----CeEEEE-ECCCCCEE--EEe
Confidence 2478999998899997765432211 1222222 44 44333332 123444 5 334321 222
Q ss_pred ccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCe
Q 000731 268 NEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNH 308 (1325)
Q Consensus 268 ~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~n~~ 308 (1325)
+ . ..+..+ ..+++..|.+.+.++ .|..||..+++
T Consensus 200 ~-~--~~~~~~-~~~~~~~l~~~~~~~---~l~~~d~~tG~ 233 (238)
T PF13360_consen 200 P-I--SGIYSL-PSVDGGTLYVTSSDG---RLYALDLKTGK 233 (238)
T ss_dssp C-S--S-ECEC-EECCCTEEEEEETTT---EEEEEETTTTE
T ss_pred c-C--CCccCC-ceeeCCEEEEEeCCC---EEEEEECCCCC
Confidence 2 1 112221 357777888877766 78888887753
No 362
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=96.13 E-value=0.03 Score=74.86 Aligned_cols=186 Identities=11% Similarity=0.067 Sum_probs=121.4
Q ss_pred CEEEEEECCCcEEEEeCCCCeEEEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeec-CceeeeeeccccCCCceecc
Q 000731 88 EALIVGTSSGLLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHD-WDLLYENPLEELAEGFDVHE 166 (1325)
Q Consensus 88 ~~La~as~dG~I~lw~~~~~~~e~vg~~~~~I~~~awSPDG~~LA~~s~dgtV~l~s~~-~d~~~e~~l~~~~~~~~Vs~ 166 (1325)
+....+..+++.--|...++-+-+. ++-.+|.++.=.|---.-.++++||.|++|-.. .+.+ .++.+.
T Consensus 2181 ~~~~~~n~~~~~~tq~~~~~~~~~k-~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v--~~~rt~-------- 2249 (2439)
T KOG1064|consen 2181 NRFTPSNLPWLGSTQTSRGASVMIK-HPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQV--VCFRTA-------- 2249 (2439)
T ss_pred ccCCcccCCccccceecccceeEee-cccCceeeecCCCCCceEEecCCCceEEEEeccCCCeE--EEeecc--------
Confidence 3444444555555555544333222 234568899889988999999999999887421 1221 112211
Q ss_pred CccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeecCCCCceeEEEEccCCCeEEEEecCCCC
Q 000731 167 PELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSE 246 (1325)
Q Consensus 167 tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~~~v~~lawsPdG~~IAs~~~d~~~ 246 (1325)
+. ..+..+.|+-.|.-|+ ++ .+|+.+-+|.. .-+......-|+..-+...|=- .++|++++...
T Consensus 2250 ----g~-s~vtr~~f~~qGnk~~-i~------d~dg~l~l~q~-~pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d- 2313 (2439)
T KOG1064|consen 2250 ----GN-SRVTRSRFNHQGNKFG-IV------DGDGDLSLWQA-SPKPYTSWQCHNKALSDFRFIG--SLLATAGRSSD- 2313 (2439)
T ss_pred ----Cc-chhhhhhhcccCCcee-ee------ccCCceeeccc-CCcceeccccCCccccceeeee--hhhhccccCCC-
Confidence 12 4678899999999888 65 46799999998 5444444444554445555543 67888876543
Q ss_pred CCCCeEEEEeCCCceEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeC
Q 000731 247 NKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSN 306 (1325)
Q Consensus 247 ~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~n 306 (1325)
...|.+||.+- .+...-++.-|.+.+..+++-|.-++|.+|+.+| -|.|||...
T Consensus 2314 --~~n~~lwDtl~-~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G---~v~l~D~rq 2367 (2439)
T KOG1064|consen 2314 --NRNVCLWDTLL-PPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKG---EVCLFDIRQ 2367 (2439)
T ss_pred --CCcccchhccc-CcccceeeeecCCCceEEEEcCcceEEEecCCcC---cEEEeehHH
Confidence 56799999531 1111122223456799999999999999999999 799999864
No 363
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=96.04 E-value=0.14 Score=63.44 Aligned_cols=65 Identities=12% Similarity=0.150 Sum_probs=44.6
Q ss_pred ChHHHHhhc-----CCcHHHHHHHHHHHHHHhccccHHHHHHHHHHcCCHH----------------HHHHHHHHcCCHH
Q 000731 975 LFPLGLKLI-----TDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSSLE----------------KAMKAYRASGNWS 1033 (1325)
Q Consensus 975 ly~~AL~L~-----~d~~~~~~i~~~~a~~L~~~~~~~eAa~~y~~ag~~e----------------kAl~~y~~ag~W~ 1033 (1325)
.+++|++|+ ..+.++...+...|.-+..+++|++|..+|.++...- .--++|...|.++
T Consensus 305 ~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ 384 (508)
T KOG1840|consen 305 YCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYK 384 (508)
T ss_pred HHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchh
Confidence 355566665 4677888888888999999999999999888664321 1225666666666
Q ss_pred HHHHHH
Q 000731 1034 GVLTVA 1039 (1325)
Q Consensus 1034 ~al~la 1039 (1325)
+|..+.
T Consensus 385 ea~~~~ 390 (508)
T KOG1840|consen 385 EAEELY 390 (508)
T ss_pred HHHHHH
Confidence 555444
No 364
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=96.03 E-value=1.2 Score=54.09 Aligned_cols=250 Identities=16% Similarity=0.147 Sum_probs=123.0
Q ss_pred ceeEEeeecCCCEEEEEeCCC--cEEEEecccccc--c----cc------------ceeeccc----cccccccCCC---
Q 000731 22 ILQFSALDIEQNRLFFASSAN--NIYSAQLSSFQN--E----RA------------SIKTAIS----AEIEHIDLEP--- 74 (1325)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~--~i~~~~~~~~~~--~----~~------------~~~~~l~----~~l~~~~~~~--- 74 (1325)
.+..+.+-.++.++.++..++ .|++|..|.+.+ + .+ -.+.++. .+++ ..|.|
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~-~gf~P~~l 81 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLK-EGFLPLTL 81 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-S-EEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccc-cccCchhh
Confidence 356677778888999986655 678888762221 0 00 0011111 1111 12444
Q ss_pred ----CCCEEEEEEccCCCEEEEEECCCcEEEEeCCCCeEEE---ece------ecCcEEEEEEc---CCC-----CeEEE
Q 000731 75 ----GDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATEV---VGR------VEGGVRFISPS---PDG-----DLLGV 133 (1325)
Q Consensus 75 ----~~~V~~v~~spdg~~La~as~dG~I~lw~~~~~~~e~---vg~------~~~~I~~~awS---PDG-----~~LA~ 133 (1325)
.+.|++++.| |--++|+|+++|.+.+.|+.+..+-. +.. ....|+++.|+ .++ =.|..
T Consensus 82 ~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~v 160 (395)
T PF08596_consen 82 LDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLV 160 (395)
T ss_dssp E---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEE
T ss_pred eeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEE
Confidence 4889999998 45599999999999999998865432 221 23468899997 333 35778
Q ss_pred EeCCccEEEEeec------CceeeeeeccccCCCceeccCccccCCCCeEEEE-EecC-C--------------------
Q 000731 134 TTGFGQILVMTHD------WDLLYENPLEELAEGFDVHEPELSSSFSFKSPIS-WRGD-G-------------------- 185 (1325)
Q Consensus 134 ~s~dgtV~l~s~~------~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~is-WspD-G-------------------- 185 (1325)
||..|++.++.-. |.....-.. ..+++.+.+|. +..| |
T Consensus 161 GTn~G~v~~fkIlp~~~g~f~v~~~~~~--------------~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~ 226 (395)
T PF08596_consen 161 GTNSGNVLTFKILPSSNGRFSVQFAGAT--------------TNHDSPILSIIPINADTGESALATISAMQGLSKGISIP 226 (395)
T ss_dssp EETTSEEEEEEEEE-GGG-EEEEEEEEE----------------SS----EEEEEETTT--B-B-BHHHHHGGGGT----
T ss_pred EeCCCCEEEEEEecCCCCceEEEEeecc--------------ccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcC
Confidence 8889998776421 111000000 01112222222 2111 1
Q ss_pred cEEEEeeccccccCCCCEEEEEECCCCceeeeecCCCCceeEEEE-----ccCCCeEEEEecCCCCCCCCeEEEEeCCCc
Q 000731 186 KYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEW-----MPSGANIAAVYDRKSENKCPSIVFYERNGL 260 (1325)
Q Consensus 186 ~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~~~v~~law-----sPdG~~IAs~~~d~~~~~~~~V~~~e~nGl 260 (1325)
.+++.++ .+.+||+..-+++.........-....+++ ...|..|++-..+ +.|++|..=+|
T Consensus 227 g~vVvvS--------e~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~------G~i~i~SLP~L 292 (395)
T PF08596_consen 227 GYVVVVS--------ESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNN------GSIRIYSLPSL 292 (395)
T ss_dssp EEEEEE---------SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETT------SEEEEEETTT-
T ss_pred cEEEEEc--------ccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECC------CcEEEEECCCc
Confidence 1333132 378999988677665554422223345556 3456666666553 57888876555
Q ss_pred eEE-EEEeccC-CCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEee
Q 000731 261 ERS-SFDINEQ-IDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFS 305 (1325)
Q Consensus 261 ~~~-~f~l~~~-~~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~ 305 (1325)
+.- +..++.. +...+...+++++|+++.-.+... +++|++-
T Consensus 293 kei~~~~l~~~~d~~~~~~ssis~~Gdi~~~~gpsE----~~l~sv~ 335 (395)
T PF08596_consen 293 KEIKSVSLPPPLDSRRLSSSSISRNGDIFYWTGPSE----IQLFSVW 335 (395)
T ss_dssp -EEEEEE-SS---HHHHTT-EE-TTS-EEEE-SSSE----EEEEEEE
T ss_pred hHhhcccCCCccccccccccEECCCCCEEEEeCccc----EEEEEEE
Confidence 532 3334311 112344667789999776665443 6666653
No 365
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.03 E-value=0.3 Score=56.99 Aligned_cols=150 Identities=14% Similarity=0.112 Sum_probs=85.2
Q ss_pred eecCcEEEEEEcCCCC-eEEEEeCCccEEEEeecCceeeeeeccccCCCceeccCccccCCCCeEEEEEecCCcEEEEee
Q 000731 114 RVEGGVRFISPSPDGD-LLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLS 192 (1325)
Q Consensus 114 ~~~~~I~~~awSPDG~-~LA~~s~dgtV~l~s~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvs 192 (1325)
.+..-|..++|||..+ +|.+++-+++|++++..-...... .. .+ ..+++.+|--|..-+...+
T Consensus 191 ~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vss----y~-----------a~-~~~wSC~wDlde~h~IYaG 254 (463)
T KOG1645|consen 191 GEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSS----YI-----------AY-NQIWSCCWDLDERHVIYAG 254 (463)
T ss_pred ccchhhhhhccCccccceeeeeccCceEEEEecccceeeeh----ee-----------cc-CCceeeeeccCCcceeEEe
Confidence 3456799999999998 788889999999986321111111 10 11 4579999999988776343
Q ss_pred ccccccCCCCEEEEEECCC--Cceee-eecCCCCceeEE------EEccCCCeEEEEecCCCCCCCCeEEEEeCCCceEE
Q 000731 193 EFCNSSKLHKRLKVWERDS--GTLQA-SSELKAFMGAVL------EWMPSGANIAAVYDRKSENKCPSIVFYERNGLERS 263 (1325)
Q Consensus 193 s~d~~~~~d~~irVWd~~~--G~l~~-t~e~~~~~v~~l------awsPdG~~IAs~~~d~~~~~~~~V~~~e~nGl~~~ 263 (1325)
..+|.|-|||... |-+.. +.+-...++..| .-.|.|-+++.+.. ...|||..+....
T Consensus 255 ------l~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt--------~l~f~ei~~s~~~ 320 (463)
T KOG1645|consen 255 ------LQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALT--------VLQFYEIVFSAEC 320 (463)
T ss_pred ------ccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeeh--------hhhhhhhhccccC
Confidence 3568999999743 22111 011111222222 34566777776654 3678875432111
Q ss_pred -EEEeccCCCCcEEEEEEccCCCeeEEEEcc
Q 000731 264 -SFDINEQIDSTVELLKWNCMSDLLAAVVRF 293 (1325)
Q Consensus 264 -~f~l~~~~~~~V~~laWSpDg~~LAs~~~d 293 (1325)
-..++....+...+++..+-++.+......
T Consensus 321 ~p~vlele~pG~cismqy~~~snh~l~tyRs 351 (463)
T KOG1645|consen 321 LPCVLELEPPGICISMQYHGVSNHLLLTYRS 351 (463)
T ss_pred CCcccccCCCcceeeeeecCccceEEEEecC
Confidence 011222223456666666655655554443
No 366
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=96.02 E-value=0.0035 Score=75.89 Aligned_cols=200 Identities=15% Similarity=0.150 Sum_probs=125.4
Q ss_pred CCEEEEEEccCC--CEEEEEECCCcEEEEeCCCC---eEEEeceecCcEEEEEEcC-CCCeEEEEe----CCccEEEEee
Q 000731 76 DSITAFDYLMEK--EALIVGTSSGLLLLHSVDGN---ATEVVGRVEGGVRFISPSP-DGDLLGVTT----GFGQILVMTH 145 (1325)
Q Consensus 76 ~~V~~v~~spdg--~~La~as~dG~I~lw~~~~~---~~e~vg~~~~~I~~~awSP-DG~~LA~~s----~dgtV~l~s~ 145 (1325)
..+.+++++-+. .+|++|.++|.|.+-+.... ..|.+..+...-++.||+| |-+.||.+- .|-.+.+|+.
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi 136 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI 136 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence 456777766654 58999999999999876432 2455555677789999988 556777663 2445666642
Q ss_pred cCceeeeeeccccCCCceeccCcccc-CCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeecCCCCc
Q 000731 146 DWDLLYENPLEELAEGFDVHEPELSS-SFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFM 224 (1325)
Q Consensus 146 ~~d~~~e~~l~~~~~~~~Vs~tqf~~-~~~~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~~~ 224 (1325)
-+.... + ....+|.+ .-++..+++|-.|-+.+. .|. ..|.+.++|. ...+.+..+-....
T Consensus 137 ----~s~ltv-P------ke~~~fs~~~l~gqns~cwlrd~klvl-aGm------~sr~~~ifdl-Rqs~~~~~svnTk~ 197 (783)
T KOG1008|consen 137 ----NSLLTV-P------KESPLFSSSTLDGQNSVCWLRDTKLVL-AGM------TSRSVHIFDL-RQSLDSVSSVNTKY 197 (783)
T ss_pred ----ccccCC-C------ccccccccccccCccccccccCcchhh-ccc------ccchhhhhhh-hhhhhhhhhhhhhh
Confidence 121110 0 01122332 234557999998888776 443 2478999997 43444444434446
Q ss_pred eeEEEEcc-CCCeEEEEecCCCCCCCCeEEEEeC--CCceEEEEEeccCCC----CcEEEEEEccCCC-eeEEEEccCCC
Q 000731 225 GAVLEWMP-SGANIAAVYDRKSENKCPSIVFYER--NGLERSSFDINEQID----STVELLKWNCMSD-LLAAVVRFEEY 296 (1325)
Q Consensus 225 v~~lawsP-dG~~IAs~~~d~~~~~~~~V~~~e~--nGl~~~~f~l~~~~~----~~V~~laWSpDg~-~LAs~~~d~~~ 296 (1325)
+..+..+| .++++|+-.+ ..|.+||. |-. .-|..-.+.+ ..+..++|.|-.+ +||+...|.
T Consensus 198 vqG~tVdp~~~nY~cs~~d-------g~iAiwD~~rnie--npl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS-- 266 (783)
T KOG1008|consen 198 VQGITVDPFSPNYFCSNSD-------GDIAIWDTYRNIE--NPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDS-- 266 (783)
T ss_pred cccceecCCCCCceecccc-------Cceeeccchhhhc--cHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCc--
Confidence 67888999 9999998774 47999982 210 0000001111 2489999999775 566666655
Q ss_pred CeEEEEEee
Q 000731 297 DSVKICFFS 305 (1325)
Q Consensus 297 ~~VqLW~~~ 305 (1325)
.+|++++..
T Consensus 267 ~tIrlydi~ 275 (783)
T KOG1008|consen 267 ITIRLYDIC 275 (783)
T ss_pred ceEEEeccc
Confidence 488888864
No 367
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=96.00 E-value=0.0067 Score=75.33 Aligned_cols=182 Identities=13% Similarity=0.153 Sum_probs=117.6
Q ss_pred CCEEEEEEccCCCEEEEEECCCcEEEEeCCCCeEE-EeceecCcEEEEEEcCCCCeEEEEeCCcc-EEEEeecCceeee-
Q 000731 76 DSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATE-VVGRVEGGVRFISPSPDGDLLGVTTGFGQ-ILVMTHDWDLLYE- 152 (1325)
Q Consensus 76 ~~V~~v~~spdg~~La~as~dG~I~lw~~~~~~~e-~vg~~~~~I~~~awSPDG~~LA~~s~dgt-V~l~s~~~d~~~e- 152 (1325)
..-++++||.+.+.|++|+-.|.|+++|+.+|..+ .+..|...|+-+.-|-||.++.+.+.... + +..|+.-..
T Consensus 1102 ~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pl---saLW~~~s~~ 1178 (1516)
T KOG1832|consen 1102 ALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPL---SALWDASSTG 1178 (1516)
T ss_pred cceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCch---HHHhcccccc
Confidence 46799999999999999999999999999998765 56667899999999999998877765432 1 123443221
Q ss_pred eeccccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeee-ecCCC---CceeEE
Q 000731 153 NPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQAS-SELKA---FMGAVL 228 (1325)
Q Consensus 153 ~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t-~e~~~---~~v~~l 228 (1325)
...|+.+ .-..+.|+.--++-| +|+ ......|||.+||..+.+ +.+.. +.-+..
T Consensus 1179 ~~~Hsf~---------------ed~~vkFsn~~q~r~-~gt------~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a 1236 (1516)
T KOG1832|consen 1179 GPRHSFD---------------EDKAVKFSNSLQFRA-LGT------EADDALLYDVQTCSPLQTYLTDTVTSSYSNNLA 1236 (1516)
T ss_pred Ccccccc---------------ccceeehhhhHHHHH-hcc------cccceEEEecccCcHHHHhcCcchhhhhhcccc
Confidence 1111111 124566665554444 553 235678999999877666 33322 223677
Q ss_pred EEccCCCeEEEEecCCCCCCCCeEEEEeCCCc--eE--EEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEe
Q 000731 229 EWMPSGANIAAVYDRKSENKCPSIVFYERNGL--ER--SSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFF 304 (1325)
Q Consensus 229 awsPdG~~IAs~~~d~~~~~~~~V~~~e~nGl--~~--~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~ 304 (1325)
.|||+-.+|.- +=++||.--. .| .+|+..+ .=.|.|.|..+.+-+ .|||+
T Consensus 1237 ~FsP~D~LIln-----------dGvLWDvR~~~aIh~FD~ft~~~-------~G~FHP~g~eVIINS--------EIwD~ 1290 (1516)
T KOG1832|consen 1237 HFSPCDTLILN-----------DGVLWDVRIPEAIHRFDQFTDYG-------GGGFHPSGNEVIINS--------EIWDM 1290 (1516)
T ss_pred ccCCCcceEee-----------CceeeeeccHHHHhhhhhheecc-------cccccCCCceEEeec--------hhhhh
Confidence 89999888752 2246774211 01 1122211 113889998887754 47999
Q ss_pred eCCe
Q 000731 305 SNNH 308 (1325)
Q Consensus 305 ~n~~ 308 (1325)
.++|
T Consensus 1291 RTF~ 1294 (1516)
T KOG1832|consen 1291 RTFK 1294 (1516)
T ss_pred HHHH
Confidence 8876
No 368
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=95.99 E-value=0.87 Score=59.15 Aligned_cols=145 Identities=14% Similarity=0.026 Sum_probs=89.9
Q ss_pred HHHhhcCHHHHHHHHHHcC---CCcH----HHHHHHHHHHhcChHH----HHhhc-----CCcHHHHHHHHHHHHHHhcc
Q 000731 940 IDLRLQRFENALKHIVSMG---DSYH----ADCLNLMKKYAQLFPL----GLKLI-----TDPAKMEQVLEAWADHLSDV 1003 (1325)
Q Consensus 940 Id~~L~rye~Al~~l~~~g---~~~~----d~ale~~~~~~~ly~~----AL~L~-----~d~~~~~~i~~~~a~~L~~~ 1003 (1325)
+-..+|+|++|+..|.++- ++.. ..+. ++... +.|+. |+.+| .+|. ...++..+|..|..+
T Consensus 221 ~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~-~l~~~-G~~~eA~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~ 297 (656)
T PRK15174 221 TLCAVGKYQEAIQTGESALARGLDGAALRRSLGL-AYYQS-GRSREAKLQAAEHWRHALQFNSD-NVRIVTLYADALIRT 297 (656)
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHH-HHHHc-CCchhhHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHC
Confidence 3345788888888777642 2111 1121 12333 44443 44444 2444 346778889999999
Q ss_pred ccHHHHHHHHHHcCCH--------HHHHHHHHHcCCHHHHHHHHhhcC-CCHHHHHHHHHHHHHHHHHcCChHHHHHHHH
Q 000731 1004 KCFEDAATTYFCCSSL--------EKAMKAYRASGNWSGVLTVAGLLK-LGKDEVAKLAQELCEELQALGKPGEAAKIAL 1074 (1325)
Q Consensus 1004 ~~~~eAa~~y~~ag~~--------ekAl~~y~~ag~W~~al~la~~l~-~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~ 1074 (1325)
+++++|...|.++-.. .....+|...|+|++|+....+.- ..++.. .....++..|...|++.+|...|.
T Consensus 298 g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~-~~~~~~a~al~~~G~~deA~~~l~ 376 (656)
T PRK15174 298 GQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTS-KWNRYAAAALLQAGKTSEAESVFE 376 (656)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccch-HHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999998876321 112367778899999987665431 222222 234446788889999999999988
Q ss_pred Hhc--------CCHHHHHHHHH
Q 000731 1075 DYC--------GDVTNGISLLI 1088 (1325)
Q Consensus 1075 ~yl--------~d~e~Av~~~~ 1088 (1325)
+.+ .++++|+..|.
T Consensus 377 ~al~~~P~~~~~~~~ea~~~~~ 398 (656)
T PRK15174 377 HYIQARASHLPQSFEEGLLALD 398 (656)
T ss_pred HHHHhChhhchhhHHHHHHHHH
Confidence 853 34455555444
No 369
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=95.98 E-value=0.0026 Score=75.03 Aligned_cols=164 Identities=14% Similarity=0.143 Sum_probs=112.9
Q ss_pred cccccccccccceeEEeeecCCCEEEEEeC-CCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCE
Q 000731 11 PLNLELQSKDEILQFSALDIEQNRLFFASS-ANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEA 89 (1325)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~d~~~~~l~~~s~-~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~V~~v~~spdg~~ 89 (1325)
...+++..|+ .+.+++||.++|.+.+..+ .+.|+.||++ +.. ..+|+.+-. +.-.-..|++-+..
T Consensus 66 q~~le~n~tg-~aldm~wDkegdvlavlAek~~piylwd~n--~ey----tqqLE~gg~-------~s~sll~wsKg~~e 131 (615)
T KOG2247|consen 66 QVILELNPTG-KALDMAWDKEGDVLAVLAEKTGPIYLWDVN--SEY----TQQLESGGT-------SSKSLLAWSKGTPE 131 (615)
T ss_pred ceecccCCch-hHhhhhhccccchhhhhhhcCCCeeechhh--hhh----HHHHhccCc-------chHHHHhhccCCcc
Confidence 3344666677 8999999999999999866 5579999994 222 233333211 11112789999999
Q ss_pred EEEEECCCcEEEEeCCCCe-EEEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeeeccccC---C-----
Q 000731 90 LIVGTSSGLLLLHSVDGNA-TEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELA---E----- 160 (1325)
Q Consensus 90 La~as~dG~I~lw~~~~~~-~e~vg~~~~~I~~~awSPDG~~LA~~s~dgtV~l~s~~~d~~~e~~l~~~~---~----- 160 (1325)
++++.-.|.+.+++..+.+ +...|.|...+.+.+|.|.+ +.+.++.|.++.+++...+.+......... +
T Consensus 132 l~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd-~vil~dcd~~L~v~~qegeta~ltevggepdnm~~~y~k 210 (615)
T KOG2247|consen 132 LVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLED-YVILCDCDNTLSVTTQEGETASLTEVGGEPDNMDFFYGK 210 (615)
T ss_pred ccccccccceEEEeccchhhhhhhcccccceeEEEecccc-eeeecCcHHHHHHhhhccceeeeeeccCccchhhhheee
Confidence 9999999999999998754 44678788999999999985 677788888877776655554332222211 0
Q ss_pred -------Cc---ee-c-----------------cCccccCCCCeEEEEEecCCcEEE
Q 000731 161 -------GF---DV-H-----------------EPELSSSFSFKSPISWRGDGKYFA 189 (1325)
Q Consensus 161 -------~~---~V-s-----------------~tqf~~~~~~i~~isWspDG~~lA 189 (1325)
+. +| + ..+|+...+.+.++.|-.||....
T Consensus 211 ~n~w~kage~m~sVvsgKkhl~yak~nE~D~pval~fq~~~gni~cyrwylDg~i~i 267 (615)
T KOG2247|consen 211 VNGWGKAGETMVSVVSGKKHLMYAKYNELDEPVALQFQEKYGNIHCYRWYLDGYILI 267 (615)
T ss_pred eeccccccceeeeeeecHHHHHHHhhcCCCCccceEeeecCCceeEEEEeccccccc
Confidence 00 00 0 236666677889999999997654
No 370
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=95.96 E-value=3.3 Score=50.15 Aligned_cols=243 Identities=11% Similarity=0.036 Sum_probs=139.5
Q ss_pred ceeEEeeecCCCEEEEEeCCCc-EEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCC-EEEEEECCCcE
Q 000731 22 ILQFSALDIEQNRLFFASSANN-IYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKE-ALIVGTSSGLL 99 (1325)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~-i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~V~~v~~spdg~-~La~as~dG~I 99 (1325)
.+...++++++..+|.....+. +...+. ..+. +.. .... +......++.++++. ..+....++.|
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~--~~n~----~~~----~~~~---g~~~p~~i~v~~~~~~vyv~~~~~~~v 98 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDA--TSNT----VTQ----SLSV---GGVYPAGVAVNPAGNKVYVTTGDSNTV 98 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeeccc--ccce----eee----eccC---CCccccceeeCCCCCeEEEecCCCCeE
Confidence 5667889999999999876443 333332 1111 110 0001 114567889999998 55555556899
Q ss_pred EEEeCCCCeEEEeceecCcEEEEEEcCCCCeEEEEeC---CccEEEEeecCceeeeeeccccCCCceeccCccccCCCCe
Q 000731 100 LLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTG---FGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFK 176 (1325)
Q Consensus 100 ~lw~~~~~~~e~vg~~~~~I~~~awSPDG~~LA~~s~---dgtV~l~s~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i 176 (1325)
.+.|..+.++.-.......-..++|+|||+.+-.+.. ++++.+.+..+..+... ... +...
T Consensus 99 ~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~-~~v-------------G~~P-- 162 (381)
T COG3391 99 SVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTAT-IPV-------------GNTP-- 162 (381)
T ss_pred EEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEE-Eec-------------CCCc--
Confidence 9999776544311112225678899999988777755 57776655444333222 111 1111
Q ss_pred EEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeee------ecCCCCceeEEEEccCCCeEEEEecCCCCCCCC
Q 000731 177 SPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQAS------SELKAFMGAVLEWMPSGANIAAVYDRKSENKCP 250 (1325)
Q Consensus 177 ~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t------~e~~~~~v~~lawsPdG~~IAs~~~d~~~~~~~ 250 (1325)
..++++|||+++. +.. ..+++|-+.|. ++..... .....+ -..++++|+|+.+-....... ..
T Consensus 163 ~~~a~~p~g~~vy-v~~-----~~~~~v~vi~~-~~~~v~~~~~~~~~~~~~~-P~~i~v~~~g~~~yV~~~~~~---~~ 231 (381)
T COG3391 163 TGVAVDPDGNKVY-VTN-----SDDNTVSVIDT-SGNSVVRGSVGSLVGVGTG-PAGIAVDPDGNRVYVANDGSG---SN 231 (381)
T ss_pred ceEEECCCCCeEE-EEe-----cCCCeEEEEeC-CCcceeccccccccccCCC-CceEEECCCCCEEEEEeccCC---Cc
Confidence 6899999999766 442 23588999997 4443331 111222 278999999997766654310 13
Q ss_pred eEEEEeCCCceEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCC
Q 000731 251 SIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNN 307 (1325)
Q Consensus 251 ~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~n~ 307 (1325)
.|...+...........+.... ....++.+|+|+..-+.... .+.|.+-+..+.
T Consensus 232 ~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~--~~~V~vid~~~~ 285 (381)
T COG3391 232 NVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQ--GGTVSVIDGATD 285 (381)
T ss_pred eEEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEecC--CCeEEEEeCCCC
Confidence 5555553321111111111111 35568999999988777543 236777666553
No 371
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=95.94 E-value=0.089 Score=56.97 Aligned_cols=25 Identities=20% Similarity=0.304 Sum_probs=14.6
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHc
Q 000731 992 VLEAWADHLSDVKCFEDAATTYFCC 1016 (1325)
Q Consensus 992 i~~~~a~~L~~~~~~~eAa~~y~~a 1016 (1325)
+...+|..+...+++++|...|.++
T Consensus 101 ~~~~~~~~~~~~g~~~~A~~~~~~~ 125 (234)
T TIGR02521 101 VLNNYGTFLCQQGKYEQAMQQFEQA 125 (234)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHH
Confidence 4445566666666666666665554
No 372
>PRK02888 nitrous-oxide reductase; Validated
Probab=95.87 E-value=0.22 Score=62.43 Aligned_cols=101 Identities=15% Similarity=0.139 Sum_probs=54.8
Q ss_pred CCcEEEEeCCC----C-eE-EEeceecCcEEEEEEcCCCCeEEEEeC-CccEEEEeecCceeee---eeccccCCCceec
Q 000731 96 SGLLLLHSVDG----N-AT-EVVGRVEGGVRFISPSPDGDLLGVTTG-FGQILVMTHDWDLLYE---NPLEELAEGFDVH 165 (1325)
Q Consensus 96 dG~I~lw~~~~----~-~~-e~vg~~~~~I~~~awSPDG~~LA~~s~-dgtV~l~s~~~d~~~e---~~l~~~~~~~~Vs 165 (1325)
++.|.++|..+ + .+ ..+. +......+++||||+++.+++. +++|.+.+- ..+.+ -.+...+ .-+.
T Consensus 295 gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv--~k~k~~~~~~~~~~~--~vva 369 (635)
T PRK02888 295 GSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDV--RKLDDLFDGKIKPRD--AVVA 369 (635)
T ss_pred CCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEC--hhhhhhhhccCCccc--eEEE
Confidence 35577777765 2 22 2221 2345778899999999988875 778877542 11110 0011111 0000
Q ss_pred cCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCC
Q 000731 166 EPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDS 211 (1325)
Q Consensus 166 ~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~ 211 (1325)
+. .-..+-...+|.++|..+. +-.. |..|-.||.++
T Consensus 370 ev---evGlGPLHTaFDg~G~ayt-slf~------dsqv~kwn~~~ 405 (635)
T PRK02888 370 EP---ELGLGPLHTAFDGRGNAYT-TLFL------DSQIVKWNIEA 405 (635)
T ss_pred ee---ccCCCcceEEECCCCCEEE-eEee------cceeEEEehHH
Confidence 00 0011225788999998665 3333 36788899844
No 373
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=95.86 E-value=0.027 Score=68.72 Aligned_cols=73 Identities=16% Similarity=0.187 Sum_probs=58.4
Q ss_pred eeEEEEccCCCeEEEEecCCCCCCCCeEEEEeCCCceEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEe
Q 000731 225 GAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFF 304 (1325)
Q Consensus 225 v~~lawsPdG~~IAs~~~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~ 304 (1325)
+.-+-|+|.=.+||.+..+ +.|.++..|- ++-++++.|+.....+++|.|||+.||+|..|| +|+|-|+
T Consensus 23 i~~~ewnP~~dLiA~~t~~------gelli~R~n~--qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG---~I~L~Dv 91 (665)
T KOG4640|consen 23 IKRIEWNPKMDLIATRTEK------GELLIHRLNW--QRLWTIPIPGENVTASLCWRPDGKLLAVGFKDG---TIRLHDV 91 (665)
T ss_pred eEEEEEcCccchhheeccC------CcEEEEEecc--ceeEeccCCCCccceeeeecCCCCEEEEEecCC---eEEEEEc
Confidence 4678899999999998774 5688888773 344566655544445999999999999999999 9999999
Q ss_pred eCCe
Q 000731 305 SNNH 308 (1325)
Q Consensus 305 ~n~~ 308 (1325)
...+
T Consensus 92 e~~~ 95 (665)
T KOG4640|consen 92 EKGG 95 (665)
T ss_pred cCCC
Confidence 8755
No 374
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=95.78 E-value=0.13 Score=62.78 Aligned_cols=126 Identities=13% Similarity=0.105 Sum_probs=77.2
Q ss_pred EEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeee-cCCCCceeEEEEccCCCeEEEEecCCCCC-----CCC
Q 000731 177 SPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASS-ELKAFMGAVLEWMPSGANIAAVYDRKSEN-----KCP 250 (1325)
Q Consensus 177 ~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~-e~~~~~v~~lawsPdG~~IAs~~~d~~~~-----~~~ 250 (1325)
..+++||||+++| .+- +..|....+++|+|.++|+.+... ....+ .+++|.+||+.+.....+.... ...
T Consensus 127 ~~~~~Spdg~~la-~~~-s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~--~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~ 202 (414)
T PF02897_consen 127 GGFSVSPDGKRLA-YSL-SDGGSEWYTLRVFDLETGKFLPDGIENPKF--SSVSWSDDGKGFFYTRFDEDQRTSDSGYPR 202 (414)
T ss_dssp EEEEETTTSSEEE-EEE-EETTSSEEEEEEEETTTTEEEEEEEEEEES--EEEEECTTSSEEEEEECSTTTSS-CCGCCE
T ss_pred eeeeECCCCCEEE-EEe-cCCCCceEEEEEEECCCCcCcCCccccccc--ceEEEeCCCCEEEEEEeCcccccccCCCCc
Confidence 4678999999999 542 222234468999999999876642 22211 2399999999887776654311 135
Q ss_pred eEEEEeCCCce-EEEEEeccCCCCc-EEEEEEccCCCeeEEEEccCCC-CeEEEEEeeC
Q 000731 251 SIVFYERNGLE-RSSFDINEQIDST-VELLKWNCMSDLLAAVVRFEEY-DSVKICFFSN 306 (1325)
Q Consensus 251 ~V~~~e~nGl~-~~~f~l~~~~~~~-V~~laWSpDg~~LAs~~~d~~~-~~VqLW~~~n 306 (1325)
.|.+|.+.... .-...+..+.... ...+.+|+||+.|.+.+..+.. ..|.+-+..+
T Consensus 203 ~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~ 261 (414)
T PF02897_consen 203 QVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDD 261 (414)
T ss_dssp EEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCC
T ss_pred EEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccc
Confidence 67777764322 2122333333333 6789999999999987776633 3455555443
No 375
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.77 E-value=3.6 Score=50.86 Aligned_cols=109 Identities=18% Similarity=0.179 Sum_probs=70.2
Q ss_pred ceeEEeeecC----CCEEEEEeCCCcEEEEeccc-ccccccceeecccccc-ccccCCCCCCEEEEEEccCCCEEEEEEC
Q 000731 22 ILQFSALDIE----QNRLFFASSANNIYSAQLSS-FQNERASIKTAISAEI-EHIDLEPGDSITAFDYLMEKEALIVGTS 95 (1325)
Q Consensus 22 ~~~~~~~d~~----~~~l~~~s~~~~i~~~~~~~-~~~~~~~~~~~l~~~l-~~~~~~~~~~V~~v~~spdg~~La~as~ 95 (1325)
.+.+++|-+. .-.+..+.-...+..|++-. .+....|-+++. -++ ..++.+|.+.| |+|....|++-+.
T Consensus 58 hV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQt-cEi~e~~pvLpQGCV----WHPk~~iL~VLT~ 132 (671)
T PF15390_consen 58 HVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQT-CEIREPFPVLPQGCV----WHPKKAILTVLTA 132 (671)
T ss_pred eeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeee-eeccCCcccCCCccc----ccCCCceEEEEec
Confidence 5777888765 44677776666688999841 111111222210 112 23666776554 9999999998887
Q ss_pred CCcEEEEeCC--CCeEE--EeceecCcEEEEEEcCCCCeEEEEeCC
Q 000731 96 SGLLLLHSVD--GNATE--VVGRVEGGVRFISPSPDGDLLGVTTGF 137 (1325)
Q Consensus 96 dG~I~lw~~~--~~~~e--~vg~~~~~I~~~awSPDG~~LA~~s~d 137 (1325)
...=.+.++. +.++. +-+ .|-|.|++|.+||+.|++|-+.
T Consensus 133 ~dvSV~~sV~~d~srVkaDi~~--~G~IhCACWT~DG~RLVVAvGS 176 (671)
T PF15390_consen 133 RDVSVLPSVHCDSSRVKADIKT--SGLIHCACWTKDGQRLVVAVGS 176 (671)
T ss_pred CceeEeeeeeeCCceEEEeccC--CceEEEEEecCcCCEEEEEeCC
Confidence 6655666663 34443 322 5779999999999999998765
No 376
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.77 E-value=0.3 Score=55.34 Aligned_cols=141 Identities=16% Similarity=0.192 Sum_probs=84.3
Q ss_pred EEEEEEccCCCEEEEEECCCcEEEEeCCCC-eE---EEeceecCcEEEEEEcCCCCeEEEEeCCccEEEE-eecCceeee
Q 000731 78 ITAFDYLMEKEALIVGTSSGLLLLHSVDGN-AT---EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVM-THDWDLLYE 152 (1325)
Q Consensus 78 V~~v~~spdg~~La~as~dG~I~lw~~~~~-~~---e~vg~~~~~I~~~awSPDG~~LA~~s~dgtV~l~-s~~~d~~~e 152 (1325)
+...+|.+-++..+. .....+.+|..+=. .+ ++.|. ...|.++.||||-++|.+++....-+++ +..++.+..
T Consensus 45 ~f~~a~~k~~~~~~~-~~~r~~~~~l~~y~~~i~akpi~g~-~~nvS~LTynp~~rtLFav~n~p~~iVElt~~Gdlirt 122 (316)
T COG3204 45 VFPCAWFKAGQTNGL-DLSRYIARYLLEYRARIDAKPILGE-TANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRT 122 (316)
T ss_pred eeeeEEEeccccccc-cccchhhhccCCceEEEeccccccc-cccccceeeCCCcceEEEecCCCceEEEEecCCceEEE
Confidence 455566666553321 11122445554321 12 23444 5669999999999999999887765554 788999998
Q ss_pred eeccccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCC-ceeee------ecC--C-C
Q 000731 153 NPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSG-TLQAS------SEL--K-A 222 (1325)
Q Consensus 153 ~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G-~l~~t------~e~--~-~ 222 (1325)
.++.... .--.|.|-++|+|.+ +. ..++++.++..+.+ ..... ++. + +
T Consensus 123 iPL~g~~---------------DpE~Ieyig~n~fvi-~d------ER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N 180 (316)
T COG3204 123 IPLTGFS---------------DPETIEYIGGNQFVI-VD------ERDRALYLFTVDADTTVISAKVQKIPLGTTNKKN 180 (316)
T ss_pred ecccccC---------------ChhHeEEecCCEEEE-Ee------hhcceEEEEEEcCCccEEeccceEEeccccCCCC
Confidence 8876532 225799999999876 43 24566766655322 11111 111 1 2
Q ss_pred CceeEEEEccCCCeEEEEec
Q 000731 223 FMGAVLEWMPSGANIAAVYD 242 (1325)
Q Consensus 223 ~~v~~lawsPdG~~IAs~~~ 242 (1325)
..-..+||.|....+-.+..
T Consensus 181 ~GfEGlA~d~~~~~l~~aKE 200 (316)
T COG3204 181 KGFEGLAWDPVDHRLFVAKE 200 (316)
T ss_pred cCceeeecCCCCceEEEEEc
Confidence 22367888887776655543
No 377
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=95.77 E-value=0.019 Score=66.03 Aligned_cols=196 Identities=16% Similarity=0.068 Sum_probs=62.0
Q ss_pred ccccHHHhhcCHHHHHHHHHHc-CC-------CcHHHHHHHHHHHhcChHHHHhhc----CCcHHHHHHHHHHHHHHhcc
Q 000731 936 MRYTIDLRLQRFENALKHIVSM-GD-------SYHADCLNLMKKYAQLFPLGLKLI----TDPAKMEQVLEAWADHLSDV 1003 (1325)
Q Consensus 936 ~~~~Id~~L~rye~Al~~l~~~-g~-------~~~d~ale~~~~~~~ly~~AL~L~----~d~~~~~~i~~~~a~~L~~~ 1003 (1325)
+-+.+.--.|+|++|++.|.+. .. +.....-++.... +.|+.|++.| .-+......+..++.+ ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~-~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSL-GDYDEAIEAYEKLLASDKANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccc-ccc
Confidence 3345555566677777777321 11 0111112333556 6677777666 1222234445555555 577
Q ss_pred ccHHHHHHHHHHc-------CCHHHHHHHHHHcCCHHHHHHHHhhcC-CC-HHHHHHHHHHHHHHHHHcCChHHHHHHHH
Q 000731 1004 KCFEDAATTYFCC-------SSLEKAMKAYRASGNWSGVLTVAGLLK-LG-KDEVAKLAQELCEELQALGKPGEAAKIAL 1074 (1325)
Q Consensus 1004 ~~~~eAa~~y~~a-------g~~ekAl~~y~~ag~W~~al~la~~l~-~~-~~~~~~l~~~la~~L~~~~~~~eAa~i~~ 1074 (1325)
+++++|..+++.+ .-+..++.+|...++|+++..+...+. .. ...-..+...+|..+.+.|++.+|.++|.
T Consensus 91 ~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 7777777766654 234567777888888888766554421 01 01123567778888888999999999887
Q ss_pred HhcC----CHH---HHHHHHHHhcCHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000731 1075 DYCG----DVT---NGISLLIDARDWEEALRVAFMHRREDLITKVKHASLECASSLIGEYKEGLEKVGK 1136 (1325)
Q Consensus 1075 ~yl~----d~e---~Av~~~~~~~~w~eA~rLa~~~~~~dL~e~v~~~l~e~~~~~~e~l~~~~~~~~k 1136 (1325)
+-+. |.+ .-+-++++.++.++|..+........ . -.|.+..........+.+.++.+.-
T Consensus 171 ~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~--~-~~~~~~~~la~~~~~lg~~~~Al~~ 236 (280)
T PF13429_consen 171 KALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA--P-DDPDLWDALAAAYLQLGRYEEALEY 236 (280)
T ss_dssp HHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---H-TSCCHCHHHHHHHHHHT-HHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC--c-CHHHHHHHHHHHhcccccccccccc
Confidence 7542 222 23556777888888666554432110 1 1344445555555566655555443
No 378
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=95.67 E-value=1.6 Score=48.29 Aligned_cols=190 Identities=18% Similarity=0.161 Sum_probs=108.3
Q ss_pred CCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEEEeCCCCeEE
Q 000731 31 EQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATE 110 (1325)
Q Consensus 31 ~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~V~~v~~spdg~~La~as~dG~I~lw~~~~~~~e 110 (1325)
+++.+|+++.++.++.||. .+++..|+.. ++..+. .. -..++..+++++.+|.|..+|..++++.
T Consensus 35 ~~~~v~~~~~~~~l~~~d~--~tG~~~W~~~-~~~~~~-------~~-----~~~~~~~v~v~~~~~~l~~~d~~tG~~~ 99 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDA--KTGKVLWRFD-LPGPIS-------GA-----PVVDGGRVYVGTSDGSLYALDAKTGKVL 99 (238)
T ss_dssp ETTEEEEEETTSEEEEEET--TTSEEEEEEE-CSSCGG-------SG-----EEEETTEEEEEETTSEEEEEETTTSCEE
T ss_pred eCCEEEEEcCCCEEEEEEC--CCCCEEEEee-cccccc-------ce-----eeecccccccccceeeeEecccCCccee
Confidence 5788999989999999999 6888777765 122211 11 1344566777778888999997776543
Q ss_pred -E--ecee--cCcEEEEEEcCCCCeEEEEeCCccEEEEe-ecCceeeeeeccccCCCceeccCccccCCCCeEEEEEecC
Q 000731 111 -V--VGRV--EGGVRFISPSPDGDLLGVTTGFGQILVMT-HDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGD 184 (1325)
Q Consensus 111 -~--vg~~--~~~I~~~awSPDG~~LA~~s~dgtV~l~s-~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspD 184 (1325)
. .... .......+...+|+.+++++.++.|..++ ++++.+-...+.......++. ...+....+.+. +
T Consensus 100 W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~-----~~~~~~~~~~~~-~ 173 (238)
T PF13360_consen 100 WSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPIS-----SFSDINGSPVIS-D 173 (238)
T ss_dssp EEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EE-----EETTEEEEEECC-T
T ss_pred eeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCccee-----eecccccceEEE-C
Confidence 1 1110 11233444555588899898888998887 556666555542211001000 000111233333 5
Q ss_pred CcEEEEeeccccccCCCCEEEEEECCCCceeeeecCCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeCC
Q 000731 185 GKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERN 258 (1325)
Q Consensus 185 G~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~~~v~~lawsPdG~~IAs~~~d~~~~~~~~V~~~e~n 258 (1325)
|..++ ++ . ..+.+.+ |..+|+.... ....+ ... ...++|..|..++.+ ..|..||+.
T Consensus 174 ~~v~~-~~-~-----~g~~~~~-d~~tg~~~w~-~~~~~-~~~-~~~~~~~~l~~~~~~------~~l~~~d~~ 230 (238)
T PF13360_consen 174 GRVYV-SS-G-----DGRVVAV-DLATGEKLWS-KPISG-IYS-LPSVDGGTLYVTSSD------GRLYALDLK 230 (238)
T ss_dssp TEEEE-EC-C-----TSSEEEE-ETTTTEEEEE-ECSS--ECE-CEECCCTEEEEEETT------TEEEEEETT
T ss_pred CEEEE-Ec-C-----CCeEEEE-ECCCCCEEEE-ecCCC-ccC-CceeeCCEEEEEeCC------CEEEEEECC
Confidence 55555 32 1 1236777 9888886642 22222 122 146788888887753 578888853
No 379
>PF12931 Sec16_C: Sec23-binding domain of Sec16; PDB: 3MZK_C.
Probab=95.65 E-value=0.082 Score=61.24 Aligned_cols=119 Identities=14% Similarity=0.169 Sum_probs=77.8
Q ss_pred HHHcCCCcHHHHHHHHHHHhcChHHHHhhc--CCcHHHHHHHHHHHHHHhccccH------HHHHHHHHHcCCHHHHHHH
Q 000731 954 IVSMGDSYHADCLNLMKKYAQLFPLGLKLI--TDPAKMEQVLEAWADHLSDVKCF------EDAATTYFCCSSLEKAMKA 1025 (1325)
Q Consensus 954 l~~~g~~~~d~ale~~~~~~~ly~~AL~L~--~d~~~~~~i~~~~a~~L~~~~~~------~eAa~~y~~ag~~ekAl~~ 1025 (1325)
++-.|+ +++|+++..++ ++|..||=|. .+++.++++...|.+.-...+.. --...+-..+|+.+.+++.
T Consensus 5 ~Ll~G~--~~~Av~~al~~-~~wa~ALlLAs~~g~e~~~~v~~~y~~~~~~~~~~~~~~~~~L~~l~~v~~g~~~~~v~~ 81 (284)
T PF12931_consen 5 LLLVGN--REEAVELALDN-GLWAHALLLASSLGPELWKKVVQEYFRREFSAGSPSSKITHLLRTLYQVFSGNSPEAVDE 81 (284)
T ss_dssp HHHTT---HHHHHHHHHHT-T-HHHHHHHHHTS-HHHHHHHHHHHHH--------THHHHHHHHHHHHHTTT-HHHHHHH
T ss_pred HHhCCC--HHHHHHHHHHC-CChHHHHHHHHhcCHHHHHHHHHHHHHHhccCCCCcchhhHHHHHHHHHHcCCcHHHHHH
Confidence 344576 89999999999 9999999998 89999999999998887543332 2234445668999999887
Q ss_pred HHHc------------CCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcC
Q 000731 1026 YRAS------------GNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCG 1078 (1325)
Q Consensus 1026 y~~a------------g~W~~al~la~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~yl~ 1078 (1325)
+... ++|++.+.+.-... .+++ ...+..|++.|.+.|+..+|-.+|+= +|
T Consensus 82 l~~~~~~~~~~~~~~~~~Wre~lA~il~N~-~~~~-~~~l~~LGd~L~~~g~~~aA~iCYll-ag 143 (284)
T PF12931_consen 82 LVPNSAAPPLEGEWDLDNWRETLAIILSNR-TPED-SQALCALGDRLWQRGRVEAAHICYLL-AG 143 (284)
T ss_dssp HHH-----HHHHHHHHHSHHHHHHHHHHTS----S-S-TT--HHHHHHHTT-HHHHHHHHHH-TT
T ss_pred hccccccccccccchhcCHHHHHHHHHhCC-Cccc-HHHHHHHHHHHHhCCCcchhHHHHhH-cC
Confidence 7654 47999988775532 3333 24556699999999987777777775 65
No 380
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=95.52 E-value=0.048 Score=67.13 Aligned_cols=193 Identities=17% Similarity=0.185 Sum_probs=116.4
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecc-cccccccceeeccccccccccCCCCCCEEEEEEccCC--CEEEEEECCCc
Q 000731 22 ILQFSALDIEQNRLFFASSANNIYSAQLS-SFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEK--EALIVGTSSGL 98 (1325)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~~~~V~~v~~spdg--~~La~as~dG~ 98 (1325)
.+.+.++.+-++-+..+|.-+ ++..|+. .++... |-.. +. .-.|-+++|+|.. .+-++.+...+
T Consensus 26 ~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr-~l~h----------~t-pw~vad~qws~h~a~~~wiVsts~qk 92 (1081)
T KOG0309|consen 26 GFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPR-WLHH----------IT-PWQVADVQWSPHPAKPYWIVSTSNQK 92 (1081)
T ss_pred cccceeeccccchhhhhhhcC-eEEEeccCCCCCce-eeec----------cC-cchhcceecccCCCCceeEEecCcch
Confidence 566777888887777777655 5555552 122221 2111 11 1256778888764 34455566677
Q ss_pred EEEEeCC---CCeEEE-eceecCcEEEEEEcCCC-CeEEEEeCCccEEEEee-cC-ceeeeeeccccCCCceeccCcccc
Q 000731 99 LLLHSVD---GNATEV-VGRVEGGVRFISPSPDG-DLLGVTTGFGQILVMTH-DW-DLLYENPLEELAEGFDVHEPELSS 171 (1325)
Q Consensus 99 I~lw~~~---~~~~e~-vg~~~~~I~~~awSPDG-~~LA~~s~dgtV~l~s~-~~-d~~~e~~l~~~~~~~~Vs~tqf~~ 171 (1325)
-++|++. ...+|. .-.|..+|+.+-|.|.. ..||+.+-|-.|-.|+. .- -+++.. ..
T Consensus 93 aiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~----------------~~ 156 (1081)
T KOG0309|consen 93 AIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYST----------------SS 156 (1081)
T ss_pred hhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeee----------------ec
Confidence 7789974 456773 33468899999998874 57899999988877642 10 111111 12
Q ss_pred CCCCeEEEEEec-CCcEEEEeeccccccCCCCEEEEEECCCC-ceeeeecCCCCceeEEEEccC-CCeEEEEecCCCCCC
Q 000731 172 SFSFKSPISWRG-DGKYFATLSEFCNSSKLHKRLKVWERDSG-TLQASSELKAFMGAVLEWMPS-GANIAAVYDRKSENK 248 (1325)
Q Consensus 172 ~~~~i~~isWsp-DG~~lAtvss~d~~~~~d~~irVWd~~~G-~l~~t~e~~~~~v~~lawsPd-G~~IAs~~~d~~~~~ 248 (1325)
+......|.|+- |+..+| + ++ .+.|+|||..-| ..+.+..++...+.+++|..- -..|-+++.
T Consensus 157 w~s~asqVkwnyk~p~vla-s-sh------g~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~------ 222 (1081)
T KOG0309|consen 157 WRSAASQVKWNYKDPNVLA-S-SH------GNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSN------ 222 (1081)
T ss_pred ccccCceeeecccCcchhh-h-cc------CCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCC------
Confidence 334568899985 677777 3 32 378999997544 455555566666666666432 122333333
Q ss_pred CCeEEEEeC
Q 000731 249 CPSIVFYER 257 (1325)
Q Consensus 249 ~~~V~~~e~ 257 (1325)
+++|+||+-
T Consensus 223 d~tvkfw~y 231 (1081)
T KOG0309|consen 223 DGTVKFWDY 231 (1081)
T ss_pred CCceeeecc
Confidence 356888863
No 381
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=95.42 E-value=1 Score=51.84 Aligned_cols=233 Identities=15% Similarity=0.083 Sum_probs=127.8
Q ss_pred CCEEEEEEccCCCEEEEEECCCcEEEEe-CCCCeE-E-EeceecCcEEEEEEcCCCCeEEEEeCCccEEEEe--ecCcee
Q 000731 76 DSITAFDYLMEKEALIVGTSSGLLLLHS-VDGNAT-E-VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMT--HDWDLL 150 (1325)
Q Consensus 76 ~~V~~v~~spdg~~La~as~dG~I~lw~-~~~~~~-e-~vg~~~~~I~~~awSPDG~~LA~~s~dgtV~l~s--~~~d~~ 150 (1325)
+.|.+....|.-+.+.+++.|.+|++|- .+.++. . +.-....++.+++++++-..|..+-..|++.-.. .+|+..
T Consensus 25 d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm 104 (404)
T KOG1409|consen 25 DDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKM 104 (404)
T ss_pred hhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhc
Confidence 4566777778788899999999999995 444442 2 4334467899999999999999999999885443 233322
Q ss_pred eeeeccccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeecCCCCce--eEE
Q 000731 151 YENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMG--AVL 228 (1325)
Q Consensus 151 ~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~~~v--~~l 228 (1325)
+.... +..|...+..+-|+---+.+. +.+.| ..+ .|-- ++...++. .-.
T Consensus 105 ~~~r~-------------~~~h~~~v~~~if~~~~e~V~-s~~~d------k~~-~~hc--------~e~~~~lg~Y~~~ 155 (404)
T KOG1409|consen 105 TFLKD-------------YLAHQARVSAIVFSLTHEWVL-STGKD------KQF-AWHC--------TESGNRLGGYNFE 155 (404)
T ss_pred chhhh-------------hhhhhcceeeEEecCCceeEE-Eeccc------cce-EEEe--------eccCCcccceEee
Confidence 22111 113445667777777777766 44332 222 3432 11111111 111
Q ss_pred EEccCCCeEEEEecCCCCCCCCeEEEEeCCCceEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCe
Q 000731 229 EWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNH 308 (1325)
Q Consensus 229 awsPdG~~IAs~~~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~n~~ 308 (1325)
++--+-..++....+.......++.=++.+++.. +.-..++.+.|..++|-|--.+|-++..|. .|-.|++....
T Consensus 156 ~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~--i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~---~vi~wdigg~~ 230 (404)
T KOG1409|consen 156 TPASALQFDALYAFVGDHSGQITMLKLEQNGCQL--ITTFNGHTGEVTCLKWDPGQRLLFSGASDH---SVIMWDIGGRK 230 (404)
T ss_pred ccCCCCceeeEEEEecccccceEEEEEeecCCce--EEEEcCcccceEEEEEcCCCcEEEeccccC---ceEEEeccCCc
Confidence 2222222222222211100112222233444321 111134567899999999999999999998 89999997543
Q ss_pred eEEEeEEEEecCCcEEEEEccCCCcEEEEEecCCcE
Q 000731 309 WYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQI 344 (1325)
Q Consensus 309 wylkqel~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~ 344 (1325)
- ...++.++.+. +...|..+..++|.....+|.+
T Consensus 231 g-~~~el~gh~~k-V~~l~~~~~t~~l~S~~edg~i 264 (404)
T KOG1409|consen 231 G-TAYELQGHNDK-VQALSYAQHTRQLISCGEDGGI 264 (404)
T ss_pred c-eeeeeccchhh-hhhhhhhhhheeeeeccCCCeE
Confidence 1 23455454322 2222333333444444444444
No 382
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=95.34 E-value=7.8 Score=45.32 Aligned_cols=218 Identities=13% Similarity=0.159 Sum_probs=99.7
Q ss_pred eeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEEEeCCC
Q 000731 27 ALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSVDG 106 (1325)
Q Consensus 27 ~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~V~~v~~spdg~~La~as~dG~I~lw~~~~ 106 (1325)
+++..++..+++.+.+.|+.-. ..+ ..|....+++.+ | +....|....++. ..+++..|.|.. ..++
T Consensus 66 ~I~f~~~~g~ivG~~g~ll~T~---DgG-~tW~~v~l~~~l------p-gs~~~i~~l~~~~-~~l~~~~G~iy~-T~Dg 132 (302)
T PF14870_consen 66 SISFDGNEGWIVGEPGLLLHTT---DGG-KTWERVPLSSKL------P-GSPFGITALGDGS-AELAGDRGAIYR-TTDG 132 (302)
T ss_dssp EEEEETTEEEEEEETTEEEEES---STT-SS-EE----TT-------S-S-EEEEEEEETTE-EEEEETT--EEE-ESST
T ss_pred EEEecCCceEEEcCCceEEEec---CCC-CCcEEeecCCCC------C-CCeeEEEEcCCCc-EEEEcCCCcEEE-eCCC
Confidence 3333456778887776444322 122 235543222221 2 3445566666654 444567777653 3344
Q ss_pred C-eEE-EeceecCcEEEEEEcCCCCeEEEEeCCccEEE-Eee---cCceeeeeeccccCCCceeccCccccCCCCeEEEE
Q 000731 107 N-ATE-VVGRVEGGVRFISPSPDGDLLGVTTGFGQILV-MTH---DWDLLYENPLEELAEGFDVHEPELSSSFSFKSPIS 180 (1325)
Q Consensus 107 ~-~~e-~vg~~~~~I~~~awSPDG~~LA~~s~dgtV~l-~s~---~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~is 180 (1325)
+ ..+ ++..-.+.|..+.-+|||++||++ ..|.+.+ |+. .|.+... .....+.++.
T Consensus 133 G~tW~~~~~~~~gs~~~~~r~~dG~~vavs-~~G~~~~s~~~G~~~w~~~~r------------------~~~~riq~~g 193 (302)
T PF14870_consen 133 GKTWQAVVSETSGSINDITRSSDGRYVAVS-SRGNFYSSWDPGQTTWQPHNR------------------NSSRRIQSMG 193 (302)
T ss_dssp TSSEEEEE-S----EEEEEE-TTS-EEEEE-TTSSEEEEE-TT-SS-EEEE--------------------SSS-EEEEE
T ss_pred CCCeeEcccCCcceeEeEEECCCCcEEEEE-CcccEEEEecCCCccceEEcc------------------Cccceehhce
Confidence 3 343 233335679999999999988766 4556643 321 1322211 1124678999
Q ss_pred EecCCcEEEEeeccccccCCCCEEEEEE-CCCCceeee--ec-CCCCc-eeEEEEccCCCeEEEEecCCCCCCCCeEEEE
Q 000731 181 WRGDGKYFATLSEFCNSSKLHKRLKVWE-RDSGTLQAS--SE-LKAFM-GAVLEWMPSGANIAAVYDRKSENKCPSIVFY 255 (1325)
Q Consensus 181 WspDG~~lAtvss~d~~~~~d~~irVWd-~~~G~l~~t--~e-~~~~~-v~~lawsPdG~~IAs~~~d~~~~~~~~V~~~ 255 (1325)
|+|||.... ++. .+.|+.=+ ...++.-.. .. ...+. +-+++|+|++...|+++. +.+..-
T Consensus 194 f~~~~~lw~-~~~-------Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~-------G~l~~S 258 (302)
T PF14870_consen 194 FSPDGNLWM-LAR-------GGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGS-------GTLLVS 258 (302)
T ss_dssp E-TTS-EEE-EET-------TTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEEST-------T-EEEE
T ss_pred ecCCCCEEE-EeC-------CcEEEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeCC-------ccEEEe
Confidence 999999866 441 25666554 212221111 11 12333 588999999999998875 334333
Q ss_pred eCCCceEEEEEecc--CCCCcEEEEEEccCCCeeEEEEccC
Q 000731 256 ERNGLERSSFDINE--QIDSTVELLKWNCMSDLLAAVVRFE 294 (1325)
Q Consensus 256 e~nGl~~~~f~l~~--~~~~~V~~laWSpDg~~LAs~~~d~ 294 (1325)
.-+|..=.. -+. +-....+.|.|.++.+-+|.+ .++
T Consensus 259 ~DgGktW~~--~~~~~~~~~n~~~i~f~~~~~gf~lG-~~G 296 (302)
T PF14870_consen 259 TDGGKTWQK--DRVGENVPSNLYRIVFVNPDKGFVLG-QDG 296 (302)
T ss_dssp SSTTSS-EE---GGGTTSSS---EEEEEETTEEEEE--STT
T ss_pred CCCCccceE--CccccCCCCceEEEEEcCCCceEEEC-CCc
Confidence 334432111 121 113458888888776666665 344
No 383
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=95.24 E-value=0.24 Score=63.17 Aligned_cols=117 Identities=14% Similarity=0.166 Sum_probs=77.6
Q ss_pred CcHHHHHHHHHHHHHHhccccHHHHHHHHHHcCC--------HHHHHHHHHHcCCHHHHHHH----HhhcC-CCHHHHHH
Q 000731 985 DPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSS--------LEKAMKAYRASGNWSGVLTV----AGLLK-LGKDEVAK 1051 (1325)
Q Consensus 985 d~~~~~~i~~~~a~~L~~~~~~~eAa~~y~~ag~--------~ekAl~~y~~ag~W~~al~l----a~~l~-~~~~~~~~ 1051 (1325)
+|..+ +++..+|+..++++++++|..+|.+|=. .-+=...|.+.|+..+|+.- ....+ .+=+...+
T Consensus 203 ~p~d~-e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d 281 (895)
T KOG2076|consen 203 NPKDY-ELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIED 281 (895)
T ss_pred CCCCh-HHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHH
Confidence 44444 6677777777777777777777766511 11223445555554444322 21212 11245567
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHhcC---------CHHHHHHHHHHhcCHHHHHHHHHh
Q 000731 1052 LAQELCEELQALGKPGEAAKIALDYCG---------DVTNGISLLIDARDWEEALRVAFM 1102 (1325)
Q Consensus 1052 l~~~la~~L~~~~~~~eAa~i~~~yl~---------d~e~Av~~~~~~~~w~eA~rLa~~ 1102 (1325)
++...+..+-..++.+-|+++++.|+. |++-.+++|++.++|+.|++....
T Consensus 282 ~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~ 341 (895)
T KOG2076|consen 282 LIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVD 341 (895)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHH
Confidence 888889999888888889999888754 788899999999999999987644
No 384
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.24 E-value=0.37 Score=60.93 Aligned_cols=106 Identities=20% Similarity=0.127 Sum_probs=73.7
Q ss_pred CcHHHHHHHHHHHHHHhccccHHHHHHHHHHcCCHHHHHHHHH-HcCCHHHHHHHHhhcCCCHH-HHHHHHHH-HHHHHH
Q 000731 985 DPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSSLEKAMKAYR-ASGNWSGVLTVAGLLKLGKD-EVAKLAQE-LCEELQ 1061 (1325)
Q Consensus 985 d~~~~~~i~~~~a~~L~~~~~~~eAa~~y~~ag~~ekAl~~y~-~ag~W~~al~la~~l~~~~~-~~~~l~~~-la~~L~ 1061 (1325)
..++-+....+=|=-|.++++|+.||-.|.-||..+.|++... ..+|.+-|+.+|+.+.-+.. .+..+.++ +-..-.
T Consensus 447 ~~~rwr~AAlKNAyaLlsk~Ry~~AAaFFLLag~l~dAv~V~~~~l~D~qLAi~i~Rl~e~d~gp~~~~ll~~~vLp~a~ 526 (631)
T PF12234_consen 447 TEPRWRTAALKNAYALLSKHRYEYAAAFFLLAGSLKDAVNVCLRQLNDPQLAIAIARLYEGDNGPVLKKLLEEHVLPEAI 526 (631)
T ss_pred CChHHHHHHHHhHHHHHhcccHHHHHHHHHhcccHHHHHHHHHHHccChhHHHHHHHHHcCCCchHHHHHHHHhhhcccc
Confidence 4556666666677789999999999999999999999998665 66899999999988753311 12233322 111112
Q ss_pred HcCChHHHHHHHHHhcCCHHHHHHHHHHhc
Q 000731 1062 ALGKPGEAAKIALDYCGDVTNGISLLIDAR 1091 (1325)
Q Consensus 1062 ~~~~~~eAa~i~~~yl~d~e~Av~~~~~~~ 1091 (1325)
+.|+.=.+.-+|-. +|++++|++.++..-
T Consensus 527 ~~~d~wl~s~~~W~-L~~~~~ai~~Li~~~ 555 (631)
T PF12234_consen 527 KEGDRWLASWAFWM-LGDYDEAIRALISPP 555 (631)
T ss_pred ccCCHHHHHHHHHh-cCCHHHHHHHHhcCc
Confidence 35555566666666 788888887777654
No 385
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.23 E-value=0.13 Score=60.54 Aligned_cols=191 Identities=14% Similarity=0.154 Sum_probs=129.0
Q ss_pred CCCEEEEEECCCcEEEEeCCC-CeEEEec---eecCcEEEEEEcCCCCeEEEEeC-CccEEEEe-ecCceeeeeeccccC
Q 000731 86 EKEALIVGTSSGLLLLHSVDG-NATEVVG---RVEGGVRFISPSPDGDLLGVTTG-FGQILVMT-HDWDLLYENPLEELA 159 (1325)
Q Consensus 86 dg~~La~as~dG~I~lw~~~~-~~~e~vg---~~~~~I~~~awSPDG~~LA~~s~-dgtV~l~s-~~~d~~~e~~l~~~~ 159 (1325)
-.+.+.+|+-||.++.|.... .-++.+- .|-+-|.+++-|-||-+..+++. |..+++.+ -++|.++.+.+...+
T Consensus 19 ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lP 98 (558)
T KOG0882|consen 19 KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLP 98 (558)
T ss_pred hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCC
Confidence 357888999999999998765 3344433 35567889999999999999887 99998865 467777666665443
Q ss_pred CCceeccCccccCCCCeEEEEEe---cCCc-EEEEeeccccccCCCCEEEEEECCCC--ceeeeecCCCCceeEEEEccC
Q 000731 160 EGFDVHEPELSSSFSFKSPISWR---GDGK-YFATLSEFCNSSKLHKRLKVWERDSG--TLQASSELKAFMGAVLEWMPS 233 (1325)
Q Consensus 160 ~~~~Vs~tqf~~~~~~i~~isWs---pDG~-~lAtvss~d~~~~~d~~irVWd~~~G--~l~~t~e~~~~~v~~lawsPd 233 (1325)
-.+.|- +|-. .+| ++..+ .+.+-|+|...+ +....-.-|...|..+-+.|.
T Consensus 99 -----------------g~a~wv~skGd~~s~IA-Vs~~~-----sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa 155 (558)
T KOG0882|consen 99 -----------------GFAEWVTSKGDKISLIA-VSLFK-----SGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQA 155 (558)
T ss_pred -----------------CceEEecCCCCeeeeEE-eeccc-----CCCcEEECCcCCcCccceecccccCceEEEEeecc
Confidence 122332 2222 455 66543 478999987322 223333457788999999999
Q ss_pred CCeEEEEecCCCCCCCCeEEEEeCCCce---EE--EEEec-------cC-CCCcEEEEEEccCCCeeEEEEccCCCCeEE
Q 000731 234 GANIAAVYDRKSENKCPSIVFYERNGLE---RS--SFDIN-------EQ-IDSTVELLKWNCMSDLLAAVVRFEEYDSVK 300 (1325)
Q Consensus 234 G~~IAs~~~d~~~~~~~~V~~~e~nGl~---~~--~f~l~-------~~-~~~~V~~laWSpDg~~LAs~~~d~~~~~Vq 300 (1325)
|..+.|... .+.|.-|...|.. .. .|.+. .+ .-....++.|||+|..++.-..|. .|+
T Consensus 156 ~Ds~vSiD~------~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~Dr---kVR 226 (558)
T KOG0882|consen 156 GDSAVSIDI------SGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDR---KVR 226 (558)
T ss_pred ccceeeccc------cceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCccc---EEE
Confidence 998776543 4678888765410 00 01111 00 113467899999999999999888 899
Q ss_pred EEEeeCCe
Q 000731 301 ICFFSNNH 308 (1325)
Q Consensus 301 LW~~~n~~ 308 (1325)
+....+..
T Consensus 227 ~F~~KtGk 234 (558)
T KOG0882|consen 227 GFVFKTGK 234 (558)
T ss_pred EEEeccch
Confidence 98887654
No 386
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.22 E-value=1.1 Score=57.83 Aligned_cols=155 Identities=16% Similarity=0.193 Sum_probs=113.0
Q ss_pred HhhcCHHHHHHHHHHcCC-CcHHHHHHHHHHHhcChHHHHhhc-------CCc----H------------HHH-------
Q 000731 942 LRLQRFENALKHIVSMGD-SYHADCLNLMKKYAQLFPLGLKLI-------TDP----A------------KME------- 990 (1325)
Q Consensus 942 ~~L~rye~Al~~l~~~g~-~~~d~ale~~~~~~~ly~~AL~L~-------~d~----~------------~~~------- 990 (1325)
..-++-.+|++.|+++.+ ..+.+.++...+- +-|+.-.+.. ..| + ++.
T Consensus 1115 L~~~~v~dAieSyikadDps~y~eVi~~a~~~-~~~edLv~yL~MaRkk~~E~~id~eLi~AyAkt~rl~elE~fi~gpN 1193 (1666)
T KOG0985|consen 1115 LQGGLVKDAIESYIKADDPSNYLEVIDVASRT-GKYEDLVKYLLMARKKVREPYIDSELIFAYAKTNRLTELEEFIAGPN 1193 (1666)
T ss_pred HhcCchHHHHHHHHhcCCcHHHHHHHHHHHhc-CcHHHHHHHHHHHHHhhcCccchHHHHHHHHHhchHHHHHHHhcCCC
Confidence 346778899999999863 3567788888787 8888766543 111 1 111
Q ss_pred -HHHHHHHHHHhccccHHHHHHHHHHcCCHHHHHHHHHHcCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHH
Q 000731 991 -QVLEAWADHLSDVKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEA 1069 (1325)
Q Consensus 991 -~i~~~~a~~L~~~~~~~eAa~~y~~ag~~ekAl~~y~~ag~W~~al~la~~l~~~~~~~~~l~~~la~~L~~~~~~~eA 1069 (1325)
.=....||-+.+.+.|+.|-++|....|+.|........|+++.|...|++-+ +..-.+ +.+-.+...+.|.-|
T Consensus 1194 ~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKAn-s~ktWK----~VcfaCvd~~EFrlA 1268 (1666)
T KOG0985|consen 1194 VANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKAN-STKTWK----EVCFACVDKEEFRLA 1268 (1666)
T ss_pred chhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhcc-chhHHH----HHHHHHhchhhhhHH
Confidence 11346789999999999999999999999999999999999999999998865 322334 444555556666665
Q ss_pred HHHHHH---hcCCHHHHHHHHHHhcCHHHHHHHHHh
Q 000731 1070 AKIALD---YCGDVTNGISLLIDARDWEEALRVAFM 1102 (1325)
Q Consensus 1070 a~i~~~---yl~d~e~Av~~~~~~~~w~eA~rLa~~ 1102 (1325)
-.+=+. ++.+.++-|..|-.-+.|+|-+.|.+.
T Consensus 1269 QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea 1304 (1666)
T KOG0985|consen 1269 QICGLNIIVHADELEELIEYYQDRGYFEELISLLEA 1304 (1666)
T ss_pred HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHh
Confidence 443222 257889999999999999998876543
No 387
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=95.18 E-value=2.7 Score=49.29 Aligned_cols=233 Identities=12% Similarity=0.066 Sum_probs=116.7
Q ss_pred eeEEeeecCCCEEEEEeC-CCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEE
Q 000731 23 LQFSALDIEQNRLFFASS-ANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1325)
Q Consensus 23 ~~~~~~d~~~~~l~~~s~-~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~V~~v~~spdg~~La~as~dG~I~l 101 (1325)
-.+..||+++..||.+.- .+.|..|++ .++.. .+- . . .+.+.++...-++..|++ ...| +.+
T Consensus 27 gEgP~w~~~~~~L~w~DI~~~~i~r~~~--~~g~~--~~~------~----~-p~~~~~~~~~d~~g~Lv~-~~~g-~~~ 89 (307)
T COG3386 27 GEGPVWDPDRGALLWVDILGGRIHRLDP--ETGKK--RVF------P----S-PGGFSSGALIDAGGRLIA-CEHG-VRL 89 (307)
T ss_pred ccCccCcCCCCEEEEEeCCCCeEEEecC--CcCce--EEE------E----C-CCCcccceeecCCCeEEE-Eccc-cEE
Confidence 345689999999988855 567999999 44431 111 1 1 123344433334444443 3333 556
Q ss_pred EeCCCCeE-E-E----eceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeee--eeccccCCCceeccCccccCC
Q 000731 102 HSVDGNAT-E-V----VGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYE--NPLEELAEGFDVHEPELSSSF 173 (1325)
Q Consensus 102 w~~~~~~~-e-~----vg~~~~~I~~~awSPDG~~LA~~s~dgtV~l~s~~~d~~~e--~~l~~~~~~~~Vs~tqf~~~~ 173 (1325)
++.+++.. . + .+.-...-+.+...|||.+-+....... .........+ ..+.+. +..+. .+..+-
T Consensus 90 ~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~---~~~~~~~~~G~lyr~~p~--g~~~~--l~~~~~ 162 (307)
T COG3386 90 LDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFD---LGKSEERPTGSLYRVDPD--GGVVR--LLDDDL 162 (307)
T ss_pred EeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccc---cCccccCCcceEEEEcCC--CCEEE--eecCcE
Confidence 67654322 2 1 1222344667788899877665444100 0001111111 001100 00000 000001
Q ss_pred CCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECC--CCceeee-----ecCCCCceeEEEEccCCCeEEEEecCCCC
Q 000731 174 SFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERD--SGTLQAS-----SELKAFMGAVLEWMPSGANIAAVYDRKSE 246 (1325)
Q Consensus 174 ~~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~--~G~l~~t-----~e~~~~~v~~lawsPdG~~IAs~~~d~~~ 246 (1325)
..-..|+|||||+.|- ++- +..+.|.-|+.. +|..... .....|.--.++---+|++-+++...
T Consensus 163 ~~~NGla~SpDg~tly-~aD-----T~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~--- 233 (307)
T COG3386 163 TIPNGLAFSPDGKTLY-VAD-----TPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWG--- 233 (307)
T ss_pred EecCceEECCCCCEEE-EEe-----CCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccC---
Confidence 1236899999998665 441 334666666552 2322111 11123333444555566665433332
Q ss_pred CCCCeEEEEeCCCceEEEEEeccCCCCcEEEEEE-ccCCCeeEEEEcc
Q 000731 247 NKCPSIVFYERNGLERSSFDINEQIDSTVELLKW-NCMSDLLAAVVRF 293 (1325)
Q Consensus 247 ~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laW-SpDg~~LAs~~~d 293 (1325)
...|..|+++|...+++.++. ..+.+++| .|+.+.|-+.+..
T Consensus 234 --g~~v~~~~pdG~l~~~i~lP~---~~~t~~~FgG~~~~~L~iTs~~ 276 (307)
T COG3386 234 --GGRVVRFNPDGKLLGEIKLPV---KRPTNPAFGGPDLNTLYITSAR 276 (307)
T ss_pred --CceEEEECCCCcEEEEEECCC---CCCccceEeCCCcCEEEEEecC
Confidence 247999999998888777762 24667777 4566666665544
No 388
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.15 E-value=0.16 Score=60.56 Aligned_cols=202 Identities=13% Similarity=0.132 Sum_probs=114.0
Q ss_pred eeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCC-CCCEEEEEEccCCCEEEEEECCCcEEEEeCC
Q 000731 27 ALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEP-GDSITAFDYLMEKEALIVGTSSGLLLLHSVD 105 (1325)
Q Consensus 27 ~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~V~~v~~spdg~~La~as~dG~I~lw~~~ 105 (1325)
++|.+ +...++|.|..+..|.+.+ .+.. ...+ ...+.... ...|.++.|..|.+.++ +-||-|.+||+-
T Consensus 743 AidNE-NSFiSASkDKTVKLWSik~-EgD~-~~ts-----aCQfTY~aHkk~i~~igfL~~lr~i~--ScD~giHlWDPF 812 (1034)
T KOG4190|consen 743 AIDNE-NSFISASKDKTVKLWSIKP-EGDE-IGTS-----ACQFTYQAHKKPIHDIGFLADLRSIA--SCDGGIHLWDPF 812 (1034)
T ss_pred hcccc-cceeeccCCceEEEEEecc-ccCc-cccc-----eeeeEhhhccCcccceeeeeccceee--eccCcceeeccc
Confidence 45554 4567788999999999831 1111 1111 11121211 35789999999998865 568999999985
Q ss_pred CCe----EEEecee--cCcEEEEEEcCCCCeEE-EEeCCccEEEEe-ecCceeeeeeccccCCCceeccCccccCCCCeE
Q 000731 106 GNA----TEVVGRV--EGGVRFISPSPDGDLLG-VTTGFGQILVMT-HDWDLLYENPLEELAEGFDVHEPELSSSFSFKS 177 (1325)
Q Consensus 106 ~~~----~e~vg~~--~~~I~~~awSPDG~~LA-~~s~dgtV~l~s-~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~ 177 (1325)
-++ ++--..+ .+.|.|+. |-|..+|. .++...||++.+ |..+...|...-... +.+..+.
T Consensus 813 igr~Laq~~dapk~~a~~~ikcl~-nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~-----------~Pna~~R 880 (1034)
T KOG4190|consen 813 IGRLLAQMEDAPKEGAGGNIKCLE-NVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAP-----------GPNALTR 880 (1034)
T ss_pred ccchhHhhhcCcccCCCceeEecc-cCcchheeeeccchhhheeeecccccceeeEEeccCC-----------CCchhee
Confidence 432 2211111 22355542 33444443 337888999875 333333333322111 1123457
Q ss_pred EEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeecCCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEE-Ee
Q 000731 178 PISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVF-YE 256 (1325)
Q Consensus 178 ~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~~~v~~lawsPdG~~IAs~~~d~~~~~~~~V~~-~e 256 (1325)
.++-.+.|+.+| ++- ..+.|-+-|.++|..+....+..-..-.++ .|+.+.+|++.- ++++.+ |.
T Consensus 881 ~iaVa~~GN~lA-a~L------SnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~sal------dHslaVnWh 946 (1034)
T KOG4190|consen 881 AIAVADKGNKLA-AAL------SNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSAL------DHSLAVNWH 946 (1034)
T ss_pred EEEeccCcchhh-HHh------cCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcc------cceeEeeeh
Confidence 899999999998 552 247888899889987765444322111222 345555555444 356666 65
Q ss_pred -CCCceEEE
Q 000731 257 -RNGLERSS 264 (1325)
Q Consensus 257 -~nGl~~~~ 264 (1325)
.+|..|-+
T Consensus 947 aldgimh~q 955 (1034)
T KOG4190|consen 947 ALDGIMHLQ 955 (1034)
T ss_pred hcCCeeeec
Confidence 45655543
No 389
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=95.10 E-value=10 Score=45.40 Aligned_cols=192 Identities=14% Similarity=0.080 Sum_probs=94.2
Q ss_pred EEccCCCEEEEEEC-CC--cEEEEeCCCCeEEEeceecC-cEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeeeccc
Q 000731 82 DYLMEKEALIVGTS-SG--LLLLHSVDGNATEVVGRVEG-GVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEE 157 (1325)
Q Consensus 82 ~~spdg~~La~as~-dG--~I~lw~~~~~~~e~vg~~~~-~I~~~awSPDG~~LA~~s~dgtV~l~s~~~d~~~e~~l~~ 157 (1325)
.|.+||+.|+.+++ +| .+.+.|+.++++..+...++ ......+||+++.|.......+|.-.+ -+...+..+..
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vd--L~T~e~~~vy~ 119 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVD--LDTLEERVVYE 119 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEE--TTT--EEEEEE
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEE--CCcCcEEEEEE
Confidence 46889988887776 44 46667888888763332221 122467899999998887666664432 12222222221
Q ss_pred cCCCceeccCccccCCCCeEEEEEe--cCCcEEEEeeccccc----------------cCCCCEEEEEECCCCceeeeec
Q 000731 158 LAEGFDVHEPELSSSFSFKSPISWR--GDGKYFATLSEFCNS----------------SKLHKRLKVWERDSGTLQASSE 219 (1325)
Q Consensus 158 ~~~~~~Vs~tqf~~~~~~i~~isWs--pDG~~lAtvss~d~~----------------~~~d~~irVWd~~~G~l~~t~e 219 (1325)
.+ ++.+-...|. .|+..++.+- ...+ +...+.|.--|..+|+.....+
T Consensus 120 ~p-------------~~~~g~gt~v~n~d~t~~~g~e-~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~ 185 (386)
T PF14583_consen 120 VP-------------DDWKGYGTWVANSDCTKLVGIE-ISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE 185 (386)
T ss_dssp ---------------TTEEEEEEEEE-TTSSEEEEEE-EEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE
T ss_pred CC-------------cccccccceeeCCCccEEEEEE-EeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe
Confidence 11 2233456774 5677665221 1111 0122345555777898877766
Q ss_pred CCCCceeEEEEcc-CCCeEEEEecCCCCCCCCeEEEEeCCCceEEEEEeccC-CCCcEEEEEEccCCCeeEEEEc
Q 000731 220 LKAFMGAVLEWMP-SGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQ-IDSTVELLKWNCMSDLLAAVVR 292 (1325)
Q Consensus 220 ~~~~~v~~lawsP-dG~~IAs~~~d~~~~~~~~V~~~e~nGl~~~~f~l~~~-~~~~V~~laWSpDg~~LAs~~~ 292 (1325)
...+...+-||| |..+|+-|-..+...-+..|.+.+.+|.... .+..+ ....+..=-|+|||..|.--+.
T Consensus 186 -~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~--~v~~~~~~e~~gHEfw~~DG~~i~y~~~ 257 (386)
T PF14583_consen 186 -DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVK--KVHRRMEGESVGHEFWVPDGSTIWYDSY 257 (386)
T ss_dssp -ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---E--ESS---TTEEEEEEEE-TTSS-EEEEEE
T ss_pred -cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcce--eeecCCCCcccccccccCCCCEEEEEee
Confidence 445567777777 6778888866443211234655566664322 22211 1235666679999998877554
No 390
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.04 E-value=1.2 Score=49.45 Aligned_cols=108 Identities=19% Similarity=0.163 Sum_probs=53.4
Q ss_pred CCcHHHHHHHHHHHHHHhccccHHHHHHHHHHcCCH--------------HHHHHHHHHcCCHHHH---HHHHhh-c-CC
Q 000731 984 TDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSSL--------------EKAMKAYRASGNWSGV---LTVAGL-L-KL 1044 (1325)
Q Consensus 984 ~d~~~~~~i~~~~a~~L~~~~~~~eAa~~y~~ag~~--------------ekAl~~y~~ag~W~~a---l~la~~-l-~~ 1044 (1325)
.+.++-+..+++=.+..+.++.+=.|+..|+.++.. +||...|.++|.-+-| +.-|.+ + +.
T Consensus 45 k~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv 124 (308)
T KOG1585|consen 45 KKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKALENV 124 (308)
T ss_pred ccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcC
Confidence 344444444444445555555555555555555432 4555556665542211 111111 0 22
Q ss_pred CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcCCHHHHHHHHHHhcCHHHHHH
Q 000731 1045 GKDEVAKLAQELCEELQALGKPGEAAKIALDYCGDVTNGISLLIDARDWEEALR 1098 (1325)
Q Consensus 1045 ~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~yl~d~e~Av~~~~~~~~w~eA~r 1098 (1325)
.|++--.++.+-+..+++.++-..|-.+|-+ +-..|++++.|.||-.
T Consensus 125 ~Pd~AlqlYqralavve~~dr~~ma~el~gk-------~sr~lVrl~kf~Eaa~ 171 (308)
T KOG1585|consen 125 KPDDALQLYQRALAVVEEDDRDQMAFELYGK-------CSRVLVRLEKFTEAAT 171 (308)
T ss_pred CHHHHHHHHHHHHHHHhccchHHHHHHHHHH-------hhhHhhhhHHhhHHHH
Confidence 3444445555555555555555555554433 3456677777777743
No 391
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=94.97 E-value=4 Score=47.83 Aligned_cols=145 Identities=13% Similarity=0.125 Sum_probs=74.0
Q ss_pred EEccCCCEEE-EEECCCcEEEEeCCCCeEEEeceecCcEEEEE-EcCCCCeEEEEeCCccEEEEe-ecCceeeeeecccc
Q 000731 82 DYLMEKEALI-VGTSSGLLLLHSVDGNATEVVGRVEGGVRFIS-PSPDGDLLGVTTGFGQILVMT-HDWDLLYENPLEEL 158 (1325)
Q Consensus 82 ~~spdg~~La-~as~dG~I~lw~~~~~~~e~vg~~~~~I~~~a-wSPDG~~LA~~s~dgtV~l~s-~~~d~~~e~~l~~~ 158 (1325)
.|.|+...|. +--..+.|.-|+..+++.+.... .+.+.++. ...+|.++++..+ +.++. ..+..++.. ...
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~~-p~~~~~~~~~d~~g~Lv~~~~g---~~~~~~~~~~~~t~~--~~~ 104 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKKRVFPS-PGGFSSGALIDAGGRLIACEHG---VRLLDPDTGGKITLL--AEP 104 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCceEEEEC-CCCcccceeecCCCeEEEEccc---cEEEeccCCceeEEe--ccc
Confidence 4777777444 44567788889998776665544 34444444 4555444433322 22222 111111111 111
Q ss_pred CCCceeccCccccCCCCeEEEEEecCCcEEEEeec---c-ccccCCCCEEEEEECCCCceeeeecCCCCceeEEEEccCC
Q 000731 159 AEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSE---F-CNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSG 234 (1325)
Q Consensus 159 ~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss---~-d~~~~~d~~irVWd~~~G~l~~t~e~~~~~v~~lawsPdG 234 (1325)
..+.. ...-..+.-.|||.+-++..+ . .++....+.+...|. .|........+-..-+.|+|||||
T Consensus 105 ~~~~~---------~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg 174 (307)
T COG3386 105 EDGLP---------LNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDG 174 (307)
T ss_pred cCCCC---------cCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCC
Confidence 11111 122345666889987763333 0 111112245555565 566555544322233789999999
Q ss_pred CeEEEEec
Q 000731 235 ANIAAVYD 242 (1325)
Q Consensus 235 ~~IAs~~~ 242 (1325)
+.+-.+-.
T Consensus 175 ~tly~aDT 182 (307)
T COG3386 175 KTLYVADT 182 (307)
T ss_pred CEEEEEeC
Confidence 98877654
No 392
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.94 E-value=11 Score=44.91 Aligned_cols=133 Identities=15% Similarity=0.166 Sum_probs=66.2
Q ss_pred hhcCHHHHHHHHHHcCCCcHHHHHHHH-------HHHhcChHHHHhhcCCcHHHHHHHHHHHHHHhccccHHHHHHHHHH
Q 000731 943 RLQRFENALKHIVSMGDSYHADCLNLM-------KKYAQLFPLGLKLITDPAKMEQVLEAWADHLSDVKCFEDAATTYFC 1015 (1325)
Q Consensus 943 ~L~rye~Al~~l~~~g~~~~d~ale~~-------~~~~~ly~~AL~L~~d~~~~~~i~~~~a~~L~~~~~~~eAa~~y~~ 1015 (1325)
--|.|++|++.|.++=.. -..|.+.. +.. +-.++||+.| +...|--|-+..-.-+-+.+|+.
T Consensus 502 ~ngd~dka~~~ykeal~n-dasc~ealfniglt~e~~-~~ldeald~f---------~klh~il~nn~evl~qianiye~ 570 (840)
T KOG2003|consen 502 ANGDLDKAAEFYKEALNN-DASCTEALFNIGLTAEAL-GNLDEALDCF---------LKLHAILLNNAEVLVQIANIYEL 570 (840)
T ss_pred ecCcHHHHHHHHHHHHcC-chHHHHHHHHhcccHHHh-cCHHHHHHHH---------HHHHHHHHhhHHHHHHHHHHHHH
Confidence 346677777777665211 12333333 333 3444444443 22222222222222345567777
Q ss_pred cCCHHHHHHHHHHcCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHH---h----cCCHHHHHHHHH
Q 000731 1016 CSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALD---Y----CGDVTNGISLLI 1088 (1325)
Q Consensus 1016 ag~~ekAl~~y~~ag~W~~al~la~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~---y----l~d~e~Av~~~~ 1088 (1325)
..+...|++.|.++.. .++-++ .++..||+-.-+.|+-++|-+++.+ | +.-++=-...|+
T Consensus 571 led~aqaie~~~q~~s---------lip~dp----~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyi 637 (840)
T KOG2003|consen 571 LEDPAQAIELLMQANS---------LIPNDP----AILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYI 637 (840)
T ss_pred hhCHHHHHHHHHHhcc---------cCCCCH----HHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHH
Confidence 7777777777654432 223332 4555666666666666666666554 1 112333445566
Q ss_pred HhcCHHHHHHH
Q 000731 1089 DARDWEEALRV 1099 (1325)
Q Consensus 1089 ~~~~w~eA~rL 1099 (1325)
+...|+.|+..
T Consensus 638 dtqf~ekai~y 648 (840)
T KOG2003|consen 638 DTQFSEKAINY 648 (840)
T ss_pred hhHHHHHHHHH
Confidence 66666666543
No 393
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=94.91 E-value=0.71 Score=56.65 Aligned_cols=150 Identities=17% Similarity=0.193 Sum_probs=88.3
Q ss_pred CceeEEEEccCCCeEEEEec-CCCCCCCCeEEEEeCCCceEEEEEeccCCCCcEEEEEEccCC-----CeeEEEEccCCC
Q 000731 223 FMGAVLEWMPSGANIAAVYD-RKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMS-----DLLAAVVRFEEY 296 (1325)
Q Consensus 223 ~~v~~lawsPdG~~IAs~~~-d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg-----~~LAs~~~d~~~ 296 (1325)
.+++.|||- ||+.+.-+.- .. .+.++|=|.+ ..|+| ..|..++|+|-+ .+||+....
T Consensus 20 HPvhGlaWT-DGkqVvLT~L~l~----~gE~kfGds~--viGqF-------EhV~GlsW~P~~~~~~paLLAVQHkk--- 82 (671)
T PF15390_consen 20 HPVHGLAWT-DGKQVVLTDLQLH----NGEPKFGDSK--VIGQF-------EHVHGLSWAPPCTADTPALLAVQHKK--- 82 (671)
T ss_pred ccccceEec-CCCEEEEEeeeee----CCccccCCcc--Eeecc-------ceeeeeeecCcccCCCCceEEEeccc---
Confidence 346889995 7776543321 11 1223333221 23443 359999999964 488887655
Q ss_pred CeEEEEEee-----CCeeEEEeEEEEecCCc---EEEEEccCCCcEEEEEecCCcEEEEEEEEeeeeCCCeeEEEEeCCE
Q 000731 297 DSVKICFFS-----NNHWYLKYEIRYLRRDG---IRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSK 368 (1325)
Q Consensus 297 ~~VqLW~~~-----n~~wylkqel~~~~~~~---~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDG~~ 368 (1325)
.|.+|.+. ..+|...|+-.....-+ ....|||.++. |.+.+....- ..+++. .|+.+
T Consensus 83 -hVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~i-L~VLT~~dvS----V~~sV~---------~d~sr 147 (671)
T PF15390_consen 83 -HVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAI-LTVLTARDVS----VLPSVH---------CDSSR 147 (671)
T ss_pred -eEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCce-EEEEecCcee----Eeeeee---------eCCce
Confidence 49999975 45777777655432222 45789999886 6666643211 122222 24455
Q ss_pred EEEeecCCcCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcE--EEEeC
Q 000731 369 ILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCL--CVVDL 422 (1325)
Q Consensus 369 l~lt~l~~~~vPpPm~~~~l~~~~~V~~VaFSpdg~~~~LAs~s~Dgti--~lw~~ 422 (1325)
|+. .+...+.|.+..|.+|| ++|+++-.+ .+ ++||-
T Consensus 148 Vka---------------Di~~~G~IhCACWT~DG--~RLVVAvGS-sLHSyiWd~ 185 (671)
T PF15390_consen 148 VKA---------------DIKTSGLIHCACWTKDG--QRLVVAVGS-SLHSYIWDS 185 (671)
T ss_pred EEE---------------eccCCceEEEEEecCcC--CEEEEEeCC-eEEEEEecC
Confidence 442 23346779999999999 777766433 45 45554
No 394
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=94.90 E-value=1.8 Score=49.80 Aligned_cols=136 Identities=17% Similarity=0.264 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHHHHhccccHHHHHHHHHHcCC-H-------HHHHHHHHHcCCHHHHHHHHhhc-CCC----HHHHHHHH
Q 000731 987 AKMEQVLEAWADHLSDVKCFEDAATTYFCCSS-L-------EKAMKAYRASGNWSGVLTVAGLL-KLG----KDEVAKLA 1053 (1325)
Q Consensus 987 ~~~~~i~~~~a~~L~~~~~~~eAa~~y~~ag~-~-------ekAl~~y~~ag~W~~al~la~~l-~~~----~~~~~~l~ 1053 (1325)
++..-.....|+-++..|-++.|..+|...-+ . +.-+..|....+|++|+.+|.++ .++ .-++...+
T Consensus 104 ~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfy 183 (389)
T COG2956 104 EQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFY 183 (389)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHH
Confidence 34455667889999999999999999999866 2 34457788889999999999865 111 23566777
Q ss_pred HHHHHHHHHcCChHHHHHHHHHhcCCHHHHH-------HHHHHhcCHHHHHHH---HHhcCCchhHHHHHHHHHHHHHHH
Q 000731 1054 QELCEELQALGKPGEAAKIALDYCGDVTNGI-------SLLIDARDWEEALRV---AFMHRREDLITKVKHASLECASSL 1123 (1325)
Q Consensus 1054 ~~la~~L~~~~~~~eAa~i~~~yl~d~e~Av-------~~~~~~~~w~eA~rL---a~~~~~~dL~e~v~~~l~e~~~~~ 1123 (1325)
-++|.......++..|-.++.+-+.--+..+ +++..-++|..|++. +.+++ ++.+..|.+.|.+++.++
T Consensus 184 CELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn-~~yl~evl~~L~~~Y~~l 262 (389)
T COG2956 184 CELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQN-PEYLSEVLEMLYECYAQL 262 (389)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHHh
Confidence 7888888777777777776665332111111 234445566655543 33444 566666777777776554
No 395
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=94.86 E-value=6.9 Score=51.94 Aligned_cols=157 Identities=12% Similarity=0.035 Sum_probs=98.6
Q ss_pred HhhcCHHHHHHHHHHcCCCc---HHH----HHHHHHHHhcChHHHHhhc-----CCcHH---HHHHHHHHHHHHhccccH
Q 000731 942 LRLQRFENALKHIVSMGDSY---HAD----CLNLMKKYAQLFPLGLKLI-----TDPAK---MEQVLEAWADHLSDVKCF 1006 (1325)
Q Consensus 942 ~~L~rye~Al~~l~~~g~~~---~d~----ale~~~~~~~ly~~AL~L~-----~d~~~---~~~i~~~~a~~L~~~~~~ 1006 (1325)
.-.|+|++|+..|.++-... .+. .-.++... +.+++|+++| .+|.. .......++.-+.+++++
T Consensus 248 l~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~-g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~ 326 (765)
T PRK10049 248 LARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKL-HQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENY 326 (765)
T ss_pred HHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhc-CCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccH
Confidence 45678999998888763221 111 22355667 8899998887 23221 123344445556888999
Q ss_pred HHHHHHHHHcCCH-------------------H----HHHHHHHHcCCHHHHHHHHhhc-CCCHHHHHHHHHHHHHHHHH
Q 000731 1007 EDAATTYFCCSSL-------------------E----KAMKAYRASGNWSGVLTVAGLL-KLGKDEVAKLAQELCEELQA 1062 (1325)
Q Consensus 1007 ~eAa~~y~~ag~~-------------------e----kAl~~y~~ag~W~~al~la~~l-~~~~~~~~~l~~~la~~L~~ 1062 (1325)
++|...+..+... . ....++...|++++|+.+..++ ...++. ..+...+|..+..
T Consensus 327 ~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n-~~l~~~lA~l~~~ 405 (765)
T PRK10049 327 PGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGN-QGLRIDYASVLQA 405 (765)
T ss_pred HHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHh
Confidence 9999888876432 1 2335777888899998777652 222333 4677888888888
Q ss_pred cCChHHHHHHHHHhcC-CHH------HHHHHHHHhcCHHHHHHHH
Q 000731 1063 LGKPGEAAKIALDYCG-DVT------NGISLLIDARDWEEALRVA 1100 (1325)
Q Consensus 1063 ~~~~~eAa~i~~~yl~-d~e------~Av~~~~~~~~w~eA~rLa 1100 (1325)
.|++.+|..++.+-+. +++ .....+...++|++|..+.
T Consensus 406 ~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~ 450 (765)
T PRK10049 406 RGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLT 450 (765)
T ss_pred cCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHH
Confidence 8999888888777322 121 2223566666777776543
No 396
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.86 E-value=0.74 Score=50.66 Aligned_cols=43 Identities=16% Similarity=0.089 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHhcCCHHHHHHHHHHhcCH
Q 000731 1051 KLAQELCEELQALGKPGEAAKIALDYCGDVTNGISLLIDARDW 1093 (1325)
Q Consensus 1051 ~l~~~la~~L~~~~~~~eAa~i~~~yl~d~e~Av~~~~~~~~w 1093 (1325)
+++.+++..=...+.|.+=+++|+.=+.|++.||..|-.+..|
T Consensus 101 eIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~ 143 (288)
T KOG1586|consen 101 EIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEY 143 (288)
T ss_pred HHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 3444444444444444455556655567777777777776666
No 397
>PRK10115 protease 2; Provisional
Probab=94.81 E-value=4.2 Score=53.15 Aligned_cols=58 Identities=7% Similarity=0.054 Sum_probs=41.5
Q ss_pred CEEEEEEccCCCEEEEEECC-C----cEEEEeCCCCe--EEEeceecCcEEEEEEcCCCCeEEEEeCC
Q 000731 77 SITAFDYLMEKEALIVGTSS-G----LLLLHSVDGNA--TEVVGRVEGGVRFISPSPDGDLLGVTTGF 137 (1325)
Q Consensus 77 ~V~~v~~spdg~~La~as~d-G----~I~lw~~~~~~--~e~vg~~~~~I~~~awSPDG~~LA~~s~d 137 (1325)
.+..+.|||||+.||.+.+. | +|.+.|+.++. .+.+.... ..++|+|||+.|..++.+
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~---~~~~w~~D~~~~~y~~~~ 192 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE---PSFVWANDSWTFYYVRKH 192 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc---eEEEEeeCCCEEEEEEec
Confidence 47789999999999876433 3 47788888765 23222211 458999999999888764
No 398
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=94.62 E-value=0.071 Score=61.37 Aligned_cols=161 Identities=18% Similarity=0.137 Sum_probs=54.7
Q ss_pred HhhcCHHHHHHHHHHc----C-CCcHHHHHHHHHHHhcChHHHHhhc-C---Cc--HHHHHHHHHHHHHHhccccHHHHH
Q 000731 942 LRLQRFENALKHIVSM----G-DSYHADCLNLMKKYAQLFPLGLKLI-T---DP--AKMEQVLEAWADHLSDVKCFEDAA 1010 (1325)
Q Consensus 942 ~~L~rye~Al~~l~~~----g-~~~~d~ale~~~~~~~ly~~AL~L~-~---d~--~~~~~i~~~~a~~L~~~~~~~eAa 1010 (1325)
...++|++|++.+.++ + +.....++.+.... +.|+++.+++ . .+ +.-..+ |...+
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~-------------~~~~a 153 (280)
T PF13429_consen 88 LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRL-GDYDEAEELLEKLEELPAAPDSARF-------------WLALA 153 (280)
T ss_dssp ------------------------------H-HHHT-T-HHHHHHHHHHHHH-T---T-HHH-------------HHHHH
T ss_pred cccccccccccccccccccccccchhhHHHHHHHHH-hHHHHHHHHHHHHHhccCCCCCHHH-------------HHHHH
Confidence 4567777777766543 1 22234455555555 5555555544 1 00 111222 33444
Q ss_pred HHHHHcCCHHHHHHHHHHcCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcCCH-------HHH
Q 000731 1011 TTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCGDV-------TNG 1083 (1325)
Q Consensus 1011 ~~y~~ag~~ekAl~~y~~ag~W~~al~la~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~yl~d~-------e~A 1083 (1325)
.+|.+.|++++|+++|.+ |+.+. +-+ .++...++-.|...|++.+|..++..|.... ..-
T Consensus 154 ~~~~~~G~~~~A~~~~~~------al~~~---P~~----~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~l 220 (280)
T PF13429_consen 154 EIYEQLGDPDKALRDYRK------ALELD---PDD----PDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDAL 220 (280)
T ss_dssp HHHHHCCHHHHHHHHHHH------HHHH----TT-----HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHH
T ss_pred HHHHHcCCHHHHHHHHHH------HHHcC---CCC----HHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 555555555555555532 22211 111 2344455556666666666555554432211 333
Q ss_pred HHHHHHhcCHHHHHHHHHh---cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000731 1084 ISLLIDARDWEEALRVAFM---HRREDLITKVKHASLECASSLIGEYKEGLEKVG 1135 (1325)
Q Consensus 1084 v~~~~~~~~w~eA~rLa~~---~~~~dL~e~v~~~l~e~~~~~~e~l~~~~~~~~ 1135 (1325)
..+|...++.++|+....+ .++. +|.........++......+...
T Consensus 221 a~~~~~lg~~~~Al~~~~~~~~~~p~------d~~~~~~~a~~l~~~g~~~~A~~ 269 (280)
T PF13429_consen 221 AAAYLQLGRYEEALEYLEKALKLNPD------DPLWLLAYADALEQAGRKDEALR 269 (280)
T ss_dssp HHHHHHHT-HHHHHHHHHHHHHHSTT-------HHHHHHHHHHHT----------
T ss_pred HHHhcccccccccccccccccccccc------ccccccccccccccccccccccc
Confidence 4455566666666654433 2211 34444444445444444444443
No 399
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=94.51 E-value=7.4 Score=50.35 Aligned_cols=121 Identities=17% Similarity=0.182 Sum_probs=75.4
Q ss_pred HHHHHHHhcCCcccc----------hHhHHHHhcCCchhccccHH---Hhhc--CHHHHHHHHHHcCCCcHHHHH-----
Q 000731 907 AAIVALNSQRDPKEF----------LPYLQELESMPPLLMRYTID---LRLQ--RFENALKHIVSMGDSYHADCL----- 966 (1325)
Q Consensus 907 al~VAq~sqkDPkeY----------LpfL~~L~~l~~~~~~~~Id---~~L~--rye~Al~~l~~~g~~~~d~al----- 966 (1325)
.-+....+++||.|+ .||...=+.++.+++-+.+. .||+ .-.+|+.|+.--....+++..
T Consensus 340 ~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d 419 (895)
T KOG2076|consen 340 VDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLD 419 (895)
T ss_pred HHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHH
Confidence 344557789999997 22222222233333332221 1333 355677777654322223333
Q ss_pred --HHHHHHhcChHHHHhhc---CCcH--HHHHHHHHHHHHHhccccHHHHHHHHHHc---------------------CC
Q 000731 967 --NLMKKYAQLFPLGLKLI---TDPA--KMEQVLEAWADHLSDVKCFEDAATTYFCC---------------------SS 1018 (1325)
Q Consensus 967 --e~~~~~~~ly~~AL~L~---~d~~--~~~~i~~~~a~~L~~~~~~~eAa~~y~~a---------------------g~ 1018 (1325)
+.+.+. +.|+.|+.++ .+.+ ....++-..|.-+++.+.|++|...|+++ |+
T Consensus 420 ~a~al~~~-~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~ 498 (895)
T KOG2076|consen 420 LADALTNI-GKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGN 498 (895)
T ss_pred HHHHHHhc-ccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCC
Confidence 334666 8899999998 2333 33558999999999999999999888764 88
Q ss_pred HHHHHHHHHH
Q 000731 1019 LEKAMKAYRA 1028 (1325)
Q Consensus 1019 ~ekAl~~y~~ 1028 (1325)
++||+++...
T Consensus 499 ~EkalEtL~~ 508 (895)
T KOG2076|consen 499 HEKALETLEQ 508 (895)
T ss_pred HHHHHHHHhc
Confidence 8888887765
No 400
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=94.51 E-value=2.4 Score=50.24 Aligned_cols=159 Identities=19% Similarity=0.137 Sum_probs=76.8
Q ss_pred EEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeeeccccCCCceeccCccccCCCCeEEEEEecC----CcEEEEeecc
Q 000731 119 VRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGD----GKYFATLSEF 194 (1325)
Q Consensus 119 I~~~awSPDG~~LA~~s~dgtV~l~s~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspD----G~~lAtvss~ 194 (1325)
-++|+|.|||+++++ ...|.|.+.+.+.+....+.-.. . | +.........+++.|+ |.++++.+..
T Consensus 4 P~~~a~~pdG~l~v~-e~~G~i~~~~~~g~~~~~v~~~~-~----v----~~~~~~gllgia~~p~f~~n~~lYv~~t~~ 73 (331)
T PF07995_consen 4 PRSMAFLPDGRLLVA-ERSGRIWVVDKDGSLKTPVADLP-E----V----FADGERGLLGIAFHPDFASNGYLYVYYTNA 73 (331)
T ss_dssp EEEEEEETTSCEEEE-ETTTEEEEEETTTEECEEEEE-T-T----T----BTSTTBSEEEEEE-TTCCCC-EEEEEEEEE
T ss_pred ceEEEEeCCCcEEEE-eCCceEEEEeCCCcCcceecccc-c----c----cccccCCcccceeccccCCCCEEEEEEEcc
Confidence 578999999988775 55899998875555411111000 0 0 1122346688999995 6655522211
Q ss_pred ccc-cCCCCEEEEEECCCC--cee-----eeecC----CCCceeEEEEccCCCeEEEEecCCC-------CCCCCeEEEE
Q 000731 195 CNS-SKLHKRLKVWERDSG--TLQ-----ASSEL----KAFMGAVLEWMPSGANIAAVYDRKS-------ENKCPSIVFY 255 (1325)
Q Consensus 195 d~~-~~~d~~irVWd~~~G--~l~-----~t~e~----~~~~v~~lawsPdG~~IAs~~~d~~-------~~~~~~V~~~ 255 (1325)
+.. ...+..|.-|....+ .+. -...+ .......|+|.|||.+.++.++... ......|.-.
T Consensus 74 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri 153 (331)
T PF07995_consen 74 DEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRI 153 (331)
T ss_dssp -TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEE
T ss_pred cCCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEe
Confidence 000 001112322333222 111 11111 1223467999999988777765432 1123445445
Q ss_pred eCCCce-------------EEEEEeccCCCCcEEEEEEccC-CCeeEEE
Q 000731 256 ERNGLE-------------RSSFDINEQIDSTVELLKWNCM-SDLLAAV 290 (1325)
Q Consensus 256 e~nGl~-------------~~~f~l~~~~~~~V~~laWSpD-g~~LAs~ 290 (1325)
+.+|.. ...|.. +-.....++|.|. |++.++=
T Consensus 154 ~~dG~~p~dnP~~~~~~~~~~i~A~---GlRN~~~~~~d~~tg~l~~~d 199 (331)
T PF07995_consen 154 DPDGSIPADNPFVGDDGADSEIYAY---GLRNPFGLAFDPNTGRLWAAD 199 (331)
T ss_dssp ETTSSB-TTSTTTTSTTSTTTEEEE-----SEEEEEEEETTTTEEEEEE
T ss_pred cccCcCCCCCccccCCCceEEEEEe---CCCccccEEEECCCCcEEEEc
Confidence 566531 111110 1123678999999 8777653
No 401
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=94.47 E-value=0.027 Score=68.55 Aligned_cols=194 Identities=12% Similarity=0.118 Sum_probs=117.9
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCC--CCCEEEEEEcc-CCCEEEEEE----
Q 000731 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEP--GDSITAFDYLM-EKEALIVGT---- 94 (1325)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~--~~~V~~v~~sp-dg~~La~as---- 94 (1325)
.|++.-++.++..+..++.++.|-.-.. ....- .++.+.| ...-++++|.+ |...||.|.
T Consensus 60 kcva~~y~~d~cIlavG~atG~I~l~s~--r~~hd-----------Ss~E~tp~~ar~Ct~lAwneLDtn~LAagldkhr 126 (783)
T KOG1008|consen 60 KCVASFYGNDRCILAVGSATGNISLLSV--RHPHD-----------SSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHR 126 (783)
T ss_pred eeehhhcCCchhhhhhccccCceEEeec--CCccc-----------ccceecccccccccccccccccHHHHHhhhhhhc
Confidence 5777778888888888888887766555 11111 0122233 24568888977 567787774
Q ss_pred CCCcEEEEeCCCCe------EEEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeeeccccCCCceeccCc
Q 000731 95 SSGLLLLHSVDGNA------TEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPE 168 (1325)
Q Consensus 95 ~dG~I~lw~~~~~~------~e~vg~~~~~I~~~awSPDG~~LA~~s~dgtV~l~s~~~d~~~e~~l~~~~~~~~Vs~tq 168 (1325)
.|-.+.|||+.++. ....+....+..+++|--|.++|.+|.....+.+.+--|...+...+.+ +
T Consensus 127 nds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svnT----k------ 196 (783)
T KOG1008|consen 127 NDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNT----K------ 196 (783)
T ss_pred ccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhhh----h------
Confidence 34568999998751 1233334567889999999998888888777765432233222222111 1
Q ss_pred cccCCCCeEEEEEec-CCcEEEEeeccccccCCCCEEEEEECC-C-Cceeeee-c---CCCCceeEEEEccCCC-eEEEE
Q 000731 169 LSSSFSFKSPISWRG-DGKYFATLSEFCNSSKLHKRLKVWERD-S-GTLQASS-E---LKAFMGAVLEWMPSGA-NIAAV 240 (1325)
Q Consensus 169 f~~~~~~i~~isWsp-DG~~lAtvss~d~~~~~d~~irVWd~~-~-G~l~~t~-e---~~~~~v~~lawsPdG~-~IAs~ 240 (1325)
.+..++-.| .+.||+ ..+ ++.|-+||.. . -.++.+. + +.......++|+|--. ++|+.
T Consensus 197 ------~vqG~tVdp~~~nY~c-s~~-------dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l 262 (783)
T KOG1008|consen 197 ------YVQGITVDPFSPNYFC-SNS-------DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVL 262 (783)
T ss_pred ------hcccceecCCCCCcee-ccc-------cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhh
Confidence 123445555 567888 432 5789999931 1 1111111 1 1222468999999653 67888
Q ss_pred ecCCCCCCCCeEEEEeC
Q 000731 241 YDRKSENKCPSIVFYER 257 (1325)
Q Consensus 241 ~~d~~~~~~~~V~~~e~ 257 (1325)
+++ ..+|++++.
T Consensus 263 ~Rd-----S~tIrlydi 274 (783)
T KOG1008|consen 263 SRD-----SITIRLYDI 274 (783)
T ss_pred ccC-----cceEEEecc
Confidence 887 468888873
No 402
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=94.44 E-value=0.094 Score=38.48 Aligned_cols=33 Identities=27% Similarity=0.360 Sum_probs=28.6
Q ss_pred eceecCcEEEEEEcCCCCeEEEEeCCccEEEEe
Q 000731 112 VGRVEGGVRFISPSPDGDLLGVTTGFGQILVMT 144 (1325)
Q Consensus 112 vg~~~~~I~~~awSPDG~~LA~~s~dgtV~l~s 144 (1325)
...+...|.+++|+|+++.+++++.|+.+.+|+
T Consensus 8 ~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 8 LKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 344678899999999999999999999998873
No 403
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=94.40 E-value=4.1 Score=55.14 Aligned_cols=159 Identities=11% Similarity=-0.043 Sum_probs=97.5
Q ss_pred cHHHhhcCHHHHHHHHHHcCCC------cHHHHHHHHHHHhcChHHHHhhc-----CCcHHHHHHHHHHHHHHhccccHH
Q 000731 939 TIDLRLQRFENALKHIVSMGDS------YHADCLNLMKKYAQLFPLGLKLI-----TDPAKMEQVLEAWADHLSDVKCFE 1007 (1325)
Q Consensus 939 ~Id~~L~rye~Al~~l~~~g~~------~~d~ale~~~~~~~ly~~AL~L~-----~d~~~~~~i~~~~a~~L~~~~~~~ 1007 (1325)
.+....|+|++|+.++.++... ++..+ ....+. +.++.|++++ .+|.. ..+...++..+...++++
T Consensus 517 ~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la-~all~~-Gd~~eA~~~l~qAL~l~P~~-~~l~~~La~~l~~~Gr~~ 593 (987)
T PRK09782 517 YQAYQVEDYATALAAWQKISLHDMSNEDLLAAA-NTAQAA-GNGAARDRWLQQAEQRGLGD-NALYWWLHAQRYIPGQPE 593 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHH-HHHHHC-CCHHHHHHHHHHHHhcCCcc-HHHHHHHHHHHHhCCCHH
Confidence 3444689999999999876421 11112 223445 7777777776 23332 233334455555668899
Q ss_pred HHHHHHHHcCC-------HHHHHHHHHHcCCHHHHHHHHhh-cCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcC-
Q 000731 1008 DAATTYFCCSS-------LEKAMKAYRASGNWSGVLTVAGL-LKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCG- 1078 (1325)
Q Consensus 1008 eAa~~y~~ag~-------~ekAl~~y~~ag~W~~al~la~~-l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~yl~- 1078 (1325)
+|..+|.++-. +-....++.+.|++++|+....+ +..+++.. .....++..|...|++.+|..+|.+-+.
T Consensus 594 eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~-~a~~nLG~aL~~~G~~eeAi~~l~~AL~l 672 (987)
T PRK09782 594 LALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNS-NYQAALGYALWDSGDIAQSREMLERAHKG 672 (987)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 99888877642 11223566677788877655443 22233333 5677888888899999999888877432
Q ss_pred ---CH---HHHHHHHHHhcCHHHHHHHHH
Q 000731 1079 ---DV---TNGISLLIDARDWEEALRVAF 1101 (1325)
Q Consensus 1079 ---d~---e~Av~~~~~~~~w~eA~rLa~ 1101 (1325)
++ .....+|...+++++|.....
T Consensus 673 ~P~~~~a~~nLA~al~~lGd~~eA~~~l~ 701 (987)
T PRK09782 673 LPDDPALIRQLAYVNQRLDDMAATQHYAR 701 (987)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 21 333456667777877765443
No 404
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.39 E-value=0.42 Score=61.01 Aligned_cols=57 Identities=26% Similarity=0.262 Sum_probs=42.8
Q ss_pred HHHHcCChHHHHHHHHHhcCCHHHHHHHHHHhcCHHHHHHHHHhcCCchhHHHHHHHH
Q 000731 1059 ELQALGKPGEAAKIALDYCGDVTNGISLLIDARDWEEALRVAFMHRREDLITKVKHAS 1116 (1325)
Q Consensus 1059 ~L~~~~~~~eAa~i~~~yl~d~e~Av~~~~~~~~w~eA~rLa~~~~~~dL~e~v~~~l 1116 (1325)
.+.+.|+.+++..+.-- .+|++.-|..+|+.++|++|+.+...+..++|.=...|.|
T Consensus 513 l~~~~~~~e~ll~fA~l-~~d~~~vv~~~~q~e~yeeaLevL~~~~~~el~yk~ap~L 569 (911)
T KOG2034|consen 513 LLASHGRQEELLQFANL-IKDYEFVVSYWIQQENYEEALEVLLNQRNPELFYKYAPEL 569 (911)
T ss_pred HHHHccCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHhhhHH
Confidence 34567888887776544 7999999999999999999998877766566543344444
No 405
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=94.11 E-value=0.14 Score=63.51 Aligned_cols=114 Identities=19% Similarity=0.118 Sum_probs=75.1
Q ss_pred EEEEEEccCCCEEEEEECCCcEEEEeCCCCeEE---EeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeee
Q 000731 78 ITAFDYLMEKEALIVGTSSGLLLLHSVDGNATE---VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENP 154 (1325)
Q Consensus 78 V~~v~~spdg~~La~as~dG~I~lw~~~~~~~e---~vg~~~~~I~~~awSPDG~~LA~~s~dgtV~l~s~~~d~~~e~~ 154 (1325)
|.-=.+...++.||+|++.|-+.|++..+++.. .-|. ++.+...+.|++..++|.|+..|.|.+.. ...+
T Consensus 36 v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~-~~~~~~~~vs~~e~lvAagt~~g~V~v~q----l~~~-- 108 (726)
T KOG3621|consen 36 VKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGA-TGITCVRSVSSVEYLVAAGTASGRVSVFQ----LNKE-- 108 (726)
T ss_pred EEEEEeecCCceEEEecccceEEEEecCchhhhcccccCc-cceEEEEEecchhHhhhhhcCCceEEeeh----hhcc--
Confidence 333345677899999999999999999987643 2232 45677889999999999999988886532 1111
Q ss_pred ccccCCCceeccCccc-cCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEEC
Q 000731 155 LEELAEGFDVHEPELS-SSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWER 209 (1325)
Q Consensus 155 l~~~~~~~~Vs~tqf~-~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~ 209 (1325)
+.+. -..++ .++ .|...|+.++|++||..|- +| +..|+|-.-..
T Consensus 109 ~p~~--~~~~t--~~d~~~~~rVTal~Ws~~~~k~y-sG------D~~Gkv~~~~L 153 (726)
T KOG3621|consen 109 LPRD--LDYVT--PCDKSHKCRVTALEWSKNGMKLY-SG------DSQGKVVLTEL 153 (726)
T ss_pred CCCc--ceeec--cccccCCceEEEEEecccccEEe-ec------CCCceEEEEEe
Confidence 1111 11111 011 2567899999999999887 55 22356654444
No 406
>PRK12370 invasion protein regulator; Provisional
Probab=93.99 E-value=0.96 Score=57.55 Aligned_cols=110 Identities=9% Similarity=-0.102 Sum_probs=57.7
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHcC----CHHHH----HHHHHHcCCHHHHHHHHhhc-CCCHHHHHHHHHHHHHHHHH
Q 000731 992 VLEAWADHLSDVKCFEDAATTYFCCS----SLEKA----MKAYRASGNWSGVLTVAGLL-KLGKDEVAKLAQELCEELQA 1062 (1325)
Q Consensus 992 i~~~~a~~L~~~~~~~eAa~~y~~ag----~~ekA----l~~y~~ag~W~~al~la~~l-~~~~~~~~~l~~~la~~L~~ 1062 (1325)
.+..+|.-+...+++++|...|.++= +...| -.+|...|++++|+....+. .+++.... ....++..+..
T Consensus 340 a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~-~~~~~~~~~~~ 418 (553)
T PRK12370 340 ALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAA-AGITKLWITYY 418 (553)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChh-hHHHHHHHHHh
Confidence 34455666667777777777776642 11111 24556667777776555431 22222211 11222333444
Q ss_pred cCChHHHHHHHHHhcC-----CHH---HHHHHHHHhcCHHHHHHHHHh
Q 000731 1063 LGKPGEAAKIALDYCG-----DVT---NGISLLIDARDWEEALRVAFM 1102 (1325)
Q Consensus 1063 ~~~~~eAa~i~~~yl~-----d~e---~Av~~~~~~~~w~eA~rLa~~ 1102 (1325)
.|+|++|...+.+.+. ++. ....+|...+++++|.....+
T Consensus 419 ~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~ 466 (553)
T PRK12370 419 HTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKE 466 (553)
T ss_pred ccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 6777777777766431 111 133445567777777766544
No 407
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=93.99 E-value=0.7 Score=58.91 Aligned_cols=187 Identities=13% Similarity=0.089 Sum_probs=112.0
Q ss_pred CCCEEEEEECCCcEEEEeCCCCeEE---EeceecCcEEEEEEcCCCCeEEEEeCCccEEEEe-ecCceeeeeeccccCCC
Q 000731 86 EKEALIVGTSSGLLLLHSVDGNATE---VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMT-HDWDLLYENPLEELAEG 161 (1325)
Q Consensus 86 dg~~La~as~dG~I~lw~~~~~~~e---~vg~~~~~I~~~awSPDG~~LA~~s~dgtV~l~s-~~~d~~~e~~l~~~~~~ 161 (1325)
++..+..|+-...+.-+|+++.+.. .++ .++|.-|+-+ ++.|-.|...|+|.+-+ +.+.++.++.
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~--a~~v~imR~N--nr~lf~G~t~G~V~LrD~~s~~~iht~~------- 214 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVS--ASGVTIMRYN--NRNLFCGDTRGTVFLRDPNSFETIHTFD------- 214 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeecc--CCceEEEEec--CcEEEeecccceEEeecCCcCceeeeee-------
Confidence 4567777777777777888875432 343 3467777764 78999999999998854 3445544443
Q ss_pred ceeccCccccCCCCeEEEEEecCCcEEEEeeccccc--cCCCCEEEEEECCCCceeeeecCCCCceeEEEEccCCC-eEE
Q 000731 162 FDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNS--SKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGA-NIA 238 (1325)
Q Consensus 162 ~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~--~~~d~~irVWd~~~G~l~~t~e~~~~~v~~lawsPdG~-~IA 238 (1325)
.|.+.+.. |.=.|+.|+|+|...-. -.-|+=|+|||.+.-..+.-..-+-++ .-+-|.|.-. .+|
T Consensus 215 ---------aHs~siSD--fDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~ 282 (1118)
T KOG1275|consen 215 ---------AHSGSISD--FDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLA 282 (1118)
T ss_pred ---------ccccceee--eeccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEE
Confidence 33344433 44567788867642100 012456999998543333221112222 4567888753 344
Q ss_pred EEecCCCCCCCCeEEEEeCCCce---EEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEee
Q 000731 239 AVYDRKSENKCPSIVFYERNGLE---RSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFS 305 (1325)
Q Consensus 239 s~~~d~~~~~~~~V~~~e~nGl~---~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~ 305 (1325)
+++. .+...|-|..++. .+.+-+ .+....+..+.+|++|+.||.+-.++ .|.+|.-.
T Consensus 283 V~S~------sGq~q~vd~~~lsNP~~~~~~v-~p~~s~i~~fDiSsn~~alafgd~~g---~v~~wa~~ 342 (1118)
T KOG1275|consen 283 VTSQ------SGQFQFVDTATLSNPPAGVKMV-NPNGSGISAFDISSNGDALAFGDHEG---HVNLWADR 342 (1118)
T ss_pred EEec------ccceeeccccccCCCccceeEE-ccCCCcceeEEecCCCceEEEecccC---cEeeecCC
Confidence 4443 2346666643322 111111 12234589999999999999999988 89999843
No 408
>PRK10115 protease 2; Provisional
Probab=93.87 E-value=10 Score=49.53 Aligned_cols=120 Identities=12% Similarity=0.044 Sum_probs=64.5
Q ss_pred cEEEEEEcCCCCeEEEEeCCc---cEEEEeecCceeeeeeccccCCCceeccCccccCCCCeEEEEEecCCcEEEEeecc
Q 000731 118 GVRFISPSPDGDLLGVTTGFG---QILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEF 194 (1325)
Q Consensus 118 ~I~~~awSPDG~~LA~~s~dg---tV~l~s~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~ 194 (1325)
.+..+.|||||++||.+...+ .-.++-++.+ ++..+.. .+ ++....++|++||+.|. .+..
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~--tg~~l~~-----~i--------~~~~~~~~w~~D~~~~~-y~~~ 191 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLE--TGNWYPE-----LL--------DNVEPSFVWANDSWTFY-YVRK 191 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECC--CCCCCCc-----cc--------cCcceEEEEeeCCCEEE-EEEe
Confidence 367789999999999985432 2222212211 1111100 00 11125699999999887 4443
Q ss_pred ccccCCCCEEEEEECCCC--ceeeeecCCCCceeEEEEcc-CCCeEEEEecCCCCCCCCeEEEEe
Q 000731 195 CNSSKLHKRLKVWERDSG--TLQASSELKAFMGAVLEWMP-SGANIAAVYDRKSENKCPSIVFYE 256 (1325)
Q Consensus 195 d~~~~~d~~irVWd~~~G--~l~~t~e~~~~~v~~lawsP-dG~~IAs~~~d~~~~~~~~V~~~e 256 (1325)
+........|..++..++ +-...++..++......|.+ ||+.+...+...+ ...+.+++
T Consensus 192 ~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~---~~~~~l~~ 253 (686)
T PRK10115 192 HPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASAT---TSEVLLLD 253 (686)
T ss_pred cCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCc---cccEEEEE
Confidence 321012357888888777 33333443444444345656 8887654444322 35577776
No 409
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.87 E-value=1.2 Score=54.81 Aligned_cols=130 Identities=17% Similarity=0.139 Sum_probs=76.6
Q ss_pred hcCHHHHHHHHHHcCC----Cc--HHHHHHHHHHHhcChHHHHhhc-CCcHHHHHHHHHHHHHHhccccHHHHHHHHHHc
Q 000731 944 LQRFENALKHIVSMGD----SY--HADCLNLMKKYAQLFPLGLKLI-TDPAKMEQVLEAWADHLSDVKCFEDAATTYFCC 1016 (1325)
Q Consensus 944 L~rye~Al~~l~~~g~----~~--~d~ale~~~~~~~ly~~AL~L~-~d~~~~~~i~~~~a~~L~~~~~~~eAa~~y~~a 1016 (1325)
+.+|++|++.+-+-+. .. |++|-=.+ +. +.-++||..+ .-+..-..+.+.+|++|+..++|++|..+|...
T Consensus 59 ~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Y-rl-nk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L 136 (652)
T KOG2376|consen 59 LDKYEDALKLIKKNGALLVINSFFFEKAYCEY-RL-NKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHL 136 (652)
T ss_pred hhHHHHHHHHHHhcchhhhcchhhHHHHHHHH-Hc-ccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 5566666644433321 01 35553222 23 4456677766 211222458889999999999999999999988
Q ss_pred -CCHHHHHHHHHHcCCHHHH--HH--HHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000731 1017 -SSLEKAMKAYRASGNWSGV--LT--VAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALD 1075 (1325)
Q Consensus 1017 -g~~ekAl~~y~~ag~W~~a--l~--la~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~ 1075 (1325)
.+..+-.+.-++++.-..+ +. +....+.-++...+++...|-.+.+.|+|.+|.+++..
T Consensus 137 ~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~k 200 (652)
T KOG2376|consen 137 AKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEK 200 (652)
T ss_pred HhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 4444444444333321111 11 12233333444567888888888888888888888766
No 410
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=93.83 E-value=0.13 Score=42.72 Aligned_cols=33 Identities=30% Similarity=0.495 Sum_probs=28.1
Q ss_pred cCcEEEEEEcCCCCeEEEEeCCccEEEEeecCc
Q 000731 116 EGGVRFISPSPDGDLLGVTTGFGQILVMTHDWD 148 (1325)
Q Consensus 116 ~~~I~~~awSPDG~~LA~~s~dgtV~l~s~~~d 148 (1325)
...|.+++|||...+||+++.+|.|.+.--+|.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~q 43 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLNWQ 43 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECCCc
Confidence 456999999999999999999999988654554
No 411
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=93.74 E-value=0.15 Score=42.38 Aligned_cols=33 Identities=12% Similarity=0.308 Sum_probs=29.7
Q ss_pred CCEEEEEEccCCCEEEEEECCCcEEEEeCCCCe
Q 000731 76 DSITAFDYLMEKEALIVGTSSGLLLLHSVDGNA 108 (1325)
Q Consensus 76 ~~V~~v~~spdg~~La~as~dG~I~lw~~~~~~ 108 (1325)
..|..++|+|..+.||+|+.+|.|.++.++..+
T Consensus 12 ~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~qr 44 (47)
T PF12894_consen 12 SRVSCMSWCPTMDLIALGTEDGEVLVYRLNWQR 44 (47)
T ss_pred CcEEEEEECCCCCEEEEEECCCeEEEEECCCcC
Confidence 469999999999999999999999999986543
No 412
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=93.71 E-value=0.1 Score=65.52 Aligned_cols=145 Identities=12% Similarity=0.141 Sum_probs=97.0
Q ss_pred cccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeecCCCCceeEEEEccCCCeEEEEecCCCCCC
Q 000731 169 LSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENK 248 (1325)
Q Consensus 169 f~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~~~v~~lawsPdG~~IAs~~~d~~~~~ 248 (1325)
|+.++...++++||++-++|+ +++. .|.|+++|..+|.-......|...++.|-=|-||.+..+.+.-.
T Consensus 1097 frd~~~~fTc~afs~~~~hL~-vG~~------~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S---- 1165 (1516)
T KOG1832|consen 1097 FRDETALFTCIAFSGGTNHLA-VGSH------AGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSS---- 1165 (1516)
T ss_pred hhccccceeeEEeecCCceEE-eeec------cceEEEEEccCccccccccccccccccccccCCcceeeeecccc----
Confidence 335677889999999999999 8865 37899999999987666666888888888888998765554321
Q ss_pred CCeEEEEeCC---CceEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeEEE---eEEEEecCCc
Q 000731 249 CPSIVFYERN---GLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLK---YEIRYLRRDG 322 (1325)
Q Consensus 249 ~~~V~~~e~n---Gl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~n~~wylk---qel~~~~~~~ 322 (1325)
.+...+|+.. |.+|. | ..-..+.||...+.=|+++... .+.|||+.+.+-.++ ..+.. +-..
T Consensus 1166 ~PlsaLW~~~s~~~~~Hs-f-------~ed~~vkFsn~~q~r~~gt~~d---~a~~YDvqT~~~l~tylt~~~~~-~y~~ 1233 (1516)
T KOG1832|consen 1166 SPLSALWDASSTGGPRHS-F-------DEDKAVKFSNSLQFRALGTEAD---DALLYDVQTCSPLQTYLTDTVTS-SYSN 1233 (1516)
T ss_pred CchHHHhccccccCcccc-c-------cccceeehhhhHHHHHhccccc---ceEEEecccCcHHHHhcCcchhh-hhhc
Confidence 3567789743 22221 2 1234788888776666666544 689999988765222 11110 0112
Q ss_pred EEEEEccCCCcEEEEE
Q 000731 323 IRFMWHPTKPLQLICW 338 (1325)
Q Consensus 323 ~~v~Wsp~~~~~L~~~ 338 (1325)
....|+|... |+++
T Consensus 1234 n~a~FsP~D~--LIln 1247 (1516)
T KOG1832|consen 1234 NLAHFSPCDT--LILN 1247 (1516)
T ss_pred cccccCCCcc--eEee
Confidence 5678888775 4554
No 413
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=93.52 E-value=3.2 Score=50.59 Aligned_cols=160 Identities=12% Similarity=0.019 Sum_probs=80.3
Q ss_pred HHHhhcCHHHHHHHHHHcCCCcH--H-----HHHHHHHHHhcChHHHHhhc-----CCcHHHHHHHHHHHHHHhccccHH
Q 000731 940 IDLRLQRFENALKHIVSMGDSYH--A-----DCLNLMKKYAQLFPLGLKLI-----TDPAKMEQVLEAWADHLSDVKCFE 1007 (1325)
Q Consensus 940 Id~~L~rye~Al~~l~~~g~~~~--d-----~ale~~~~~~~ly~~AL~L~-----~d~~~~~~i~~~~a~~L~~~~~~~ 1007 (1325)
+....|++++|.++|.++.+... . .+-++.... +.|+.|++.+ .+| ....+....++-+...++|+
T Consensus 127 aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~-g~~~~Al~~l~~~~~~~P-~~~~al~ll~~~~~~~gdw~ 204 (398)
T PRK10747 127 AAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLAR-NENHAARHGVDKLLEVAP-RHPEVLRLAEQAYIRTGAWS 204 (398)
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHC-CCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHhHH
Confidence 33455666666666665432100 1 112344555 6666666655 222 23345555556666666777
Q ss_pred HHHHHHHHcCCH-----HHHH----HHH-------HHcCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHH
Q 000731 1008 DAATTYFCCSSL-----EKAM----KAY-------RASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAK 1071 (1325)
Q Consensus 1008 eAa~~y~~ag~~-----ekAl----~~y-------~~ag~W~~al~la~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~ 1071 (1325)
+|..++.+..+. +.+- .+| ....+.+.+..+...++....+..++...+|..+...|++.+|..
T Consensus 205 ~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~ 284 (398)
T PRK10747 205 SLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQ 284 (398)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 776555554321 1111 111 111223333333333321111113466677888888888888888
Q ss_pred HHHHhcCC--HHHHHHHHH--HhcCHHHHHHHHH
Q 000731 1072 IALDYCGD--VTNGISLLI--DARDWEEALRVAF 1101 (1325)
Q Consensus 1072 i~~~yl~d--~e~Av~~~~--~~~~w~eA~rLa~ 1101 (1325)
+..+-++. .+..+.+|. ..++.++|+..++
T Consensus 285 ~L~~~l~~~~~~~l~~l~~~l~~~~~~~al~~~e 318 (398)
T PRK10747 285 IILDGLKRQYDERLVLLIPRLKTNNPEQLEKVLR 318 (398)
T ss_pred HHHHHHhcCCCHHHHHHHhhccCCChHHHHHHHH
Confidence 87775432 233334443 4477777777664
No 414
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=93.43 E-value=3.4 Score=48.87 Aligned_cols=110 Identities=15% Similarity=0.121 Sum_probs=59.6
Q ss_pred EEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeec-C--------------CCCceeEEEEccCCCeE-EEEe
Q 000731 178 PISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSE-L--------------KAFMGAVLEWMPSGANI-AAVY 241 (1325)
Q Consensus 178 ~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e-~--------------~~~~v~~lawsPdG~~I-As~~ 241 (1325)
+|++.+||.+++ +.-.+......-.|+.++. +|....... | .+.-..+|+++|||+.| +..+
T Consensus 89 gi~~~~~g~~~i-s~E~~~~~~~~p~I~~~~~-~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E 166 (326)
T PF13449_consen 89 GIAVPPDGSFWI-SSEGGRTGGIPPRIRRFDL-DGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAME 166 (326)
T ss_pred HeEEecCCCEEE-EeCCccCCCCCCEEEEECC-CCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEEC
Confidence 566678888776 4311100001156777777 577654431 1 22234899999999944 4443
Q ss_pred cCCCCC-------CCCeEEEEeCC----CceEEEEEeccC------CCCcEEEEEEccCCCeeEE
Q 000731 242 DRKSEN-------KCPSIVFYERN----GLERSSFDINEQ------IDSTVELLKWNCMSDLLAA 289 (1325)
Q Consensus 242 ~d~~~~-------~~~~V~~~e~n----Gl~~~~f~l~~~------~~~~V~~laWSpDg~~LAs 289 (1325)
.--.++ ....++++.-+ |....+|..+.. ....|.++.|=||+++|+.
T Consensus 167 ~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 167 SPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred ccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 210001 11125554432 433455655532 3457889999999987655
No 415
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.40 E-value=1.9 Score=48.81 Aligned_cols=113 Identities=11% Similarity=0.100 Sum_probs=75.0
Q ss_pred EEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeecCCCC--ceeEEEEccCCCeEEEEec------CCC------
Q 000731 180 SWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAF--MGAVLEWMPSGANIAAVYD------RKS------ 245 (1325)
Q Consensus 180 sWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~~--~v~~lawsPdG~~IAs~~~------d~~------ 245 (1325)
.|||||.+|- .. ....+.+.+.|-|||. +-.+....|-... --+.+.|.+||++++.+.. +-+
T Consensus 120 vfs~dG~~LY-AT-Endfd~~rGViGvYd~-r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNl 196 (366)
T COG3490 120 VFSPDGRLLY-AT-ENDFDPNRGVIGVYDA-REGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNL 196 (366)
T ss_pred ccCCCCcEEE-ee-cCCCCCCCceEEEEec-ccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccch
Confidence 4899999885 22 2222356789999999 5556665552221 2378999999999987743 110
Q ss_pred CCCCCeEEEEe-CCCceEEEEEecc-CCCCcEEEEEEccCCCeeEEEEccCC
Q 000731 246 ENKCPSIVFYE-RNGLERSSFDINE-QIDSTVELLKWNCMSDLLAAVVRFEE 295 (1325)
Q Consensus 246 ~~~~~~V~~~e-~nGl~~~~f~l~~-~~~~~V~~laWSpDg~~LAs~~~d~~ 295 (1325)
..-...+++.+ ..|....+-+|+. ....+|..++..+||++++.+-..++
T Consensus 197 dsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~ 248 (366)
T COG3490 197 DSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGP 248 (366)
T ss_pred hhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCC
Confidence 11245677777 6776655555651 12457999999999999988766553
No 416
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.36 E-value=0.98 Score=49.72 Aligned_cols=80 Identities=23% Similarity=0.254 Sum_probs=43.1
Q ss_pred ccccHHHHHHHHHHcCCHHHHHHHHHHcCCHHHH---HHHH----hhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHH
Q 000731 1002 DVKCFEDAATTYFCCSSLEKAMKAYRASGNWSGV---LTVA----GLLKLGKDEVAKLAQELCEELQALGKPGEAAKIAL 1074 (1325)
Q Consensus 1002 ~~~~~~eAa~~y~~ag~~ekAl~~y~~ag~W~~a---l~la----~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~ 1074 (1325)
-.++|++|+.+|++|+| +|..+.+|..| +.-| .+.+ ++.+...-+.+.+.-+ ...+.++|+.++.
T Consensus 26 g~~k~eeAadl~~~Aan------~yklaK~w~~AG~aflkaA~~h~k~~-skhDaat~YveA~~cy-kk~~~~eAv~cL~ 97 (288)
T KOG1586|consen 26 GSNKYEEAAELYERAAN------MYKLAKNWSAAGDAFLKAADLHLKAG-SKHDAATTYVEAANCY-KKVDPEEAVNCLE 97 (288)
T ss_pred CCcchHHHHHHHHHHHH------HHHHHHhHHHHHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHh-hccChHHHHHHHH
Confidence 34578888888876554 45555555544 2222 2222 2222222222222222 3346666666644
Q ss_pred HhcCCHHHHHHHHHHhcCHHHH
Q 000731 1075 DYCGDVTNGISLLIDARDWEEA 1096 (1325)
Q Consensus 1075 ~yl~d~e~Av~~~~~~~~w~eA 1096 (1325)
+ ||++|+..++|..|
T Consensus 98 ~-------aieIyt~~Grf~~a 112 (288)
T KOG1586|consen 98 K-------AIEIYTDMGRFTMA 112 (288)
T ss_pred H-------HHHHHHhhhHHHHH
Confidence 3 78888888988665
No 417
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=93.36 E-value=0.086 Score=66.39 Aligned_cols=92 Identities=17% Similarity=0.247 Sum_probs=59.7
Q ss_pred cEEEEecccccccccceeeccccccccccCCC-C---CCEEEEEEccCCCEEEEEECCCcEEEEeCCCCeEE-EeceecC
Q 000731 43 NIYSAQLSSFQNERASIKTAISAEIEHIDLEP-G---DSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATE-VVGRVEG 117 (1325)
Q Consensus 43 ~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~---~~V~~v~~spdg~~La~as~dG~I~lw~~~~~~~e-~vg~~~~ 117 (1325)
.+|.+|+ .+++.+.++. -++..| + +.|....|-+..-.+|.+-.+|+|++.+.+..... +.+ |..
T Consensus 156 fVy~vd~--l~G~iq~~l~-------v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~~l~rs-Hs~ 225 (1283)
T KOG1916|consen 156 FVYDVDV--LQGEIQPQLE-------VTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALRSLFRS-HSQ 225 (1283)
T ss_pred heeehHh--hccccccceE-------EeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHHHHHHh-cCC
Confidence 4666666 6666544432 122333 2 44666666678889999999999999666542222 222 333
Q ss_pred cE-----------EEEEEcCCCCeEEEEeCCccEEEEe
Q 000731 118 GV-----------RFISPSPDGDLLGVTTGFGQILVMT 144 (1325)
Q Consensus 118 ~I-----------~~~awSPDG~~LA~~s~dgtV~l~s 144 (1325)
++ .-...||||+.+|.+..||.+..|.
T Consensus 226 ~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Q 263 (1283)
T KOG1916|consen 226 RVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQ 263 (1283)
T ss_pred CcccHHHHhhchhhheeeCCCCcEEEEeecCCccceee
Confidence 33 3344799999999999999998774
No 418
>PRK12370 invasion protein regulator; Provisional
Probab=93.36 E-value=1.5 Score=55.74 Aligned_cols=86 Identities=15% Similarity=0.036 Sum_probs=56.9
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHcC-----C----HHHHHHHHHHcCCHHHHHHHHhhcC-CCHHHHHHHHHHHHHHHH
Q 000731 992 VLEAWADHLSDVKCFEDAATTYFCCS-----S----LEKAMKAYRASGNWSGVLTVAGLLK-LGKDEVAKLAQELCEELQ 1061 (1325)
Q Consensus 992 i~~~~a~~L~~~~~~~eAa~~y~~ag-----~----~ekAl~~y~~ag~W~~al~la~~l~-~~~~~~~~l~~~la~~L~ 1061 (1325)
.+..+|.-+...|++++|...|+++- + +..+ .++...|++++|+..+.+.- ..+.........+|..+.
T Consensus 374 a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~-~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~ 452 (553)
T PRK12370 374 IKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKL-WITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLS 452 (553)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHH-HHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHH
Confidence 45667888888899999999888872 1 1122 24556778888877765431 000111234566788888
Q ss_pred HcCChHHHHHHHHHhcC
Q 000731 1062 ALGKPGEAAKIALDYCG 1078 (1325)
Q Consensus 1062 ~~~~~~eAa~i~~~yl~ 1078 (1325)
..|++++|...+.+...
T Consensus 453 ~~G~~~eA~~~~~~~~~ 469 (553)
T PRK12370 453 LKGKHELARKLTKEIST 469 (553)
T ss_pred hCCCHHHHHHHHHHhhh
Confidence 89999999998887543
No 419
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=93.36 E-value=0.52 Score=55.71 Aligned_cols=196 Identities=14% Similarity=0.098 Sum_probs=117.9
Q ss_pred CcEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeeeccccCCCceeccCccccCCCCeEEEEEecCCcEEEEeecccc
Q 000731 117 GGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCN 196 (1325)
Q Consensus 117 ~~I~~~awSPDG~~LA~~s~dgtV~l~s~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~ 196 (1325)
+-|+-+.-+ --+.+.+|+-||.++.|.+.--...+.-. .|+.|-..+.+++-+-||..++|++
T Consensus 10 d~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVK------------hFraHL~~I~sl~~S~dg~L~~Sv~---- 72 (558)
T KOG0882|consen 10 DVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVK------------HFRAHLGVILSLAVSYDGWLFRSVE---- 72 (558)
T ss_pred ceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehh------------hhHHHHHHHHhhhccccceeEeecc----
Confidence 334433333 34789999999999988654312222221 2445556677888899999998444
Q ss_pred ccCCCCEEEEEECCCCceeeeecCCCCceeEEEEccCCC----eEEEEecCCCCCCCCeEEEEeCCCceEEEEEeccCCC
Q 000731 197 SSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGA----NIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQID 272 (1325)
Q Consensus 197 ~~~~d~~irVWd~~~G~l~~t~e~~~~~v~~lawsPdG~----~IAs~~~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~ 272 (1325)
..|..+|++|.++-....... ...+-..+.|--+-. +||.+..+ .+.|-++|.-|..-.......-+.
T Consensus 73 --d~Dhs~KvfDvEn~DminmiK-L~~lPg~a~wv~skGd~~s~IAVs~~~-----sg~i~VvD~~~d~~q~~~fkklH~ 144 (558)
T KOG0882|consen 73 --DPDHSVKVFDVENFDMINMIK-LVDLPGFAEWVTSKGDKISLIAVSLFK-----SGKIFVVDGFGDFCQDGYFKKLHF 144 (558)
T ss_pred --CcccceeEEEeeccchhhhcc-cccCCCceEEecCCCCeeeeEEeeccc-----CCCcEEECCcCCcCccceeccccc
Confidence 235789999985544333221 112223445543333 67777765 467888886443211101112245
Q ss_pred CcEEEEEEccCCCeeEEEEccCCCCeEEEEEee--------CCeeEEEeEEE---EecC--CcEEEEEccCCCcEEEEEe
Q 000731 273 STVELLKWNCMSDLLAAVVRFEEYDSVKICFFS--------NNHWYLKYEIR---YLRR--DGIRFMWHPTKPLQLICWT 339 (1325)
Q Consensus 273 ~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~--------n~~wylkqel~---~~~~--~~~~v~Wsp~~~~~L~~~~ 339 (1325)
..|..+..+|-|+...+....| .|.-|+.. +-+|-+|.+-. +... .+.++.++|++.. +....
T Consensus 145 sPV~~i~y~qa~Ds~vSiD~~g---mVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~q-istl~ 220 (558)
T KOG0882|consen 145 SPVKKIRYNQAGDSAVSIDISG---MVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQ-ISTLN 220 (558)
T ss_pred CceEEEEeeccccceeeccccc---eeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCc-ccccC
Confidence 7899999999999888876666 89999976 35666665421 2221 2378999999865 44444
Q ss_pred cC
Q 000731 340 LD 341 (1325)
Q Consensus 340 ~~ 341 (1325)
.+
T Consensus 221 ~D 222 (558)
T KOG0882|consen 221 PD 222 (558)
T ss_pred cc
Confidence 33
No 420
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=93.29 E-value=0.63 Score=56.84 Aligned_cols=109 Identities=14% Similarity=0.012 Sum_probs=60.0
Q ss_pred chhccccHHHhhcCHHHHHHHHHHcCCCc------HHHHHHHHHHHhcChHHHHhhc-C----CcHHHHHHHHHHHHHHh
Q 000731 933 PLLMRYTIDLRLQRFENALKHIVSMGDSY------HADCLNLMKKYAQLFPLGLKLI-T----DPAKMEQVLEAWADHLS 1001 (1325)
Q Consensus 933 ~~~~~~~Id~~L~rye~Al~~l~~~g~~~------~d~ale~~~~~~~ly~~AL~L~-~----d~~~~~~i~~~~a~~L~ 1001 (1325)
....++.+...-|+|+.|.+++.+..+.. .-.+-+..... +.|+.|.+++ . .|.....+...+|+.+.
T Consensus 86 ~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~-g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l 164 (409)
T TIGR00540 86 KQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQR-GDEARANQHLEEAAELAGNDNILVEIARTRILL 164 (409)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHH
Confidence 34556677777777777777777653211 11222334455 6666666665 1 22222233444566677
Q ss_pred ccccHHHHHHHHHHcCCH--------HHHHHHHHHcCCHHHHHHHHhhc
Q 000731 1002 DVKCFEDAATTYFCCSSL--------EKAMKAYRASGNWSGVLTVAGLL 1042 (1325)
Q Consensus 1002 ~~~~~~eAa~~y~~ag~~--------ekAl~~y~~ag~W~~al~la~~l 1042 (1325)
..++|++|...+...-.. .-+..+|...|+|++|..+...+
T Consensus 165 ~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l 213 (409)
T TIGR00540 165 AQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNM 213 (409)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 777777776666654211 23446666777777666555443
No 421
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=93.27 E-value=1.4 Score=53.73 Aligned_cols=108 Identities=11% Similarity=-0.019 Sum_probs=73.4
Q ss_pred hhccccHHHhhcCHHHHHHHHHHcCCC------cHHHHHHHHHHHhcChHHHHhhc-----CCcHHHHHHHHHHHHHHhc
Q 000731 934 LLMRYTIDLRLQRFENALKHIVSMGDS------YHADCLNLMKKYAQLFPLGLKLI-----TDPAKMEQVLEAWADHLSD 1002 (1325)
Q Consensus 934 ~~~~~~Id~~L~rye~Al~~l~~~g~~------~~d~ale~~~~~~~ly~~AL~L~-----~d~~~~~~i~~~~a~~L~~ 1002 (1325)
...+..+...-|+|++|.+.+.+.... ++-.+-++.... +.|+.|.+.+ .+|+......-..|+....
T Consensus 87 ~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~-g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~ 165 (398)
T PRK10747 87 QTEQALLKLAEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQR-GDEARANQHLERAAELADNDQLPVEITRVRIQLA 165 (398)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHC-CCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence 445566776679999999998875321 122333444667 8888888887 2443322222233888899
Q ss_pred cccHHHHHHHHHHcCCH--------HHHHHHHHHcCCHHHHHHHHhhc
Q 000731 1003 VKCFEDAATTYFCCSSL--------EKAMKAYRASGNWSGVLTVAGLL 1042 (1325)
Q Consensus 1003 ~~~~~eAa~~y~~ag~~--------ekAl~~y~~ag~W~~al~la~~l 1042 (1325)
.+++++|...+.+.-+. .-..++|...|+|++|+.+...+
T Consensus 166 ~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l 213 (398)
T PRK10747 166 RNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSM 213 (398)
T ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 99999999988886322 45668899999999998655543
No 422
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=93.18 E-value=0.12 Score=47.97 Aligned_cols=51 Identities=25% Similarity=0.303 Sum_probs=29.6
Q ss_pred HHHHHcCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000731 1024 KAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALD 1075 (1325)
Q Consensus 1024 ~~y~~ag~W~~al~la~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~ 1075 (1325)
.||.+.|+|++|+.+..+.+.++.. ......+|..+.+.|+|++|..+|.+
T Consensus 33 ~~~~~~~~y~~A~~~~~~~~~~~~~-~~~~~l~a~~~~~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 33 QCYFQQGKYEEAIELLQKLKLDPSN-PDIHYLLARCLLKLGKYEEAIKALEK 83 (84)
T ss_dssp HHHHHTTHHHHHHHHHHCHTHHHCH-HHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 5566666666666666443322222 23444557777777888887777665
No 423
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.00 E-value=1.1 Score=50.45 Aligned_cols=54 Identities=19% Similarity=0.200 Sum_probs=37.9
Q ss_pred EEccCCCEEEEE-----ECCCcEEEEeCCCCeEEEec---eecCcEEEEEEcCCCCeEEEEeC
Q 000731 82 DYLMEKEALIVG-----TSSGLLLLHSVDGNATEVVG---RVEGGVRFISPSPDGDLLGVTTG 136 (1325)
Q Consensus 82 ~~spdg~~La~a-----s~dG~I~lw~~~~~~~e~vg---~~~~~I~~~awSPDG~~LA~~s~ 136 (1325)
.|||||+.|... ..-|-|-+||...+ ..-+| .|.-|-..+.|.+||++|+.+.+
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~-fqrvgE~~t~GiGpHev~lm~DGrtlvvanG 181 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREG-FQRVGEFSTHGIGPHEVTLMADGRTLVVANG 181 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecccc-cceecccccCCcCcceeEEecCCcEEEEeCC
Confidence 389999998754 23366889998742 22222 23445678899999999999976
No 424
>PRK14574 hmsH outer membrane protein; Provisional
Probab=92.95 E-value=2.4 Score=56.15 Aligned_cols=186 Identities=15% Similarity=0.080 Sum_probs=110.7
Q ss_pred CCcccchHhHHHHhcCCchhccc-----cHHHhhcCHHHHHHHHHHcCCC----cHHHH--HHHHHHHhcChHHHHhhc-
Q 000731 916 RDPKEFLPYLQELESMPPLLMRY-----TIDLRLQRFENALKHIVSMGDS----YHADC--LNLMKKYAQLFPLGLKLI- 983 (1325)
Q Consensus 916 kDPkeYLpfL~~L~~l~~~~~~~-----~Id~~L~rye~Al~~l~~~g~~----~~d~a--le~~~~~~~ly~~AL~L~- 983 (1325)
.|..+-+..|+++-+..|+-... .+...+|++++|+.++.++-+. ..... -..+... +.|++|+++|
T Consensus 48 Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~-gdyd~Aiely~ 126 (822)
T PRK14574 48 GDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNE-KRWDQALALWQ 126 (822)
T ss_pred CCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHH
Confidence 44444466666665554443322 5556779999999999998531 11222 1255677 8899999988
Q ss_pred ----CCcHHHHHHHHHHHHHHhccccHHHHHHHHHHcCCHHH-----HHHHHHH--cCCHHHHHHHHhhc-CCCHHHHHH
Q 000731 984 ----TDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSSLEK-----AMKAYRA--SGNWSGVLTVAGLL-KLGKDEVAK 1051 (1325)
Q Consensus 984 ----~d~~~~~~i~~~~a~~L~~~~~~~eAa~~y~~ag~~ek-----Al~~y~~--ag~W~~al~la~~l-~~~~~~~~~ 1051 (1325)
.+|.. ..++...|.-+.+.+++++|...+.++..... -..+|.. .++..+|+...+++ ...+++ .+
T Consensus 127 kaL~~dP~n-~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~n-~e 204 (822)
T PRK14574 127 SSLKKDPTN-PDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPTS-EE 204 (822)
T ss_pred HHHhhCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCCC-HH
Confidence 46655 44444557777788899999888888743211 1123333 23333355444332 112222 35
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHhcCCHHHHHHHHHHhcCHHHHHHHHHhcC
Q 000731 1052 LAQELCEELQALGKPGEAAKIALDYCGDVTNGISLLIDARDWEEALRVAFMHR 1104 (1325)
Q Consensus 1052 l~~~la~~L~~~~~~~eAa~i~~~yl~d~e~Av~~~~~~~~w~eA~rLa~~~~ 1104 (1325)
++.++...|...|-..-|.++..+|=+-+...-..-++...-.+-+|.+....
T Consensus 205 ~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~ 257 (822)
T PRK14574 205 VLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPT 257 (822)
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhccccc
Confidence 77788888888888888888877754444444444455555555566554333
No 425
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=92.92 E-value=28 Score=42.39 Aligned_cols=255 Identities=15% Similarity=0.169 Sum_probs=122.6
Q ss_pred ceeEEeee-cCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEE
Q 000731 22 ILQFSALD-IEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLL 100 (1325)
Q Consensus 22 ~~~~~~~d-~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~V~~v~~spdg~~La~as~dG~I~ 100 (1325)
.+.++.|- .|.+.-+.+...+.|++-+- .++ .|....+|.... .++ .-...+|.|. +++ ..++++.|.|.
T Consensus 89 ~L~~V~F~~~d~~~GwAVG~~G~IL~T~D---GG~-tW~~~~~~~~~~-~~~--~~~l~~v~f~-~~~-g~~vG~~G~il 159 (398)
T PLN00033 89 VLLDIAFVPDDPTHGFLLGTRQTLLETKD---GGK-TWVPRSIPSAED-EDF--NYRFNSISFK-GKE-GWIIGKPAILL 159 (398)
T ss_pred ceEEEEeccCCCCEEEEEcCCCEEEEEcC---CCC-CceECccCcccc-ccc--ccceeeeEEE-CCE-EEEEcCceEEE
Confidence 45556652 35566677777776665332 222 255432221100 000 1135677775 444 54556777544
Q ss_pred EEeCCCC-eEEEece---ecCcEEEEEEcCCCCeEEEEeCCccEEEEe---ecCceeeeeecc-ccC--CCceec-cCcc
Q 000731 101 LHSVDGN-ATEVVGR---VEGGVRFISPSPDGDLLGVTTGFGQILVMT---HDWDLLYENPLE-ELA--EGFDVH-EPEL 169 (1325)
Q Consensus 101 lw~~~~~-~~e~vg~---~~~~I~~~awSPDG~~LA~~s~dgtV~l~s---~~~d~~~e~~l~-~~~--~~~~Vs-~tqf 169 (1325)
...+++ ..+.+.. .++.-..+..-.++. ...++..|+|..-+ ..|..+...... +.. ....++ .+
T Consensus 160 -~T~DgG~tW~~~~~~~~~p~~~~~i~~~~~~~-~~ivg~~G~v~~S~D~G~tW~~~~~~t~~~~l~~~~~s~~~g~~-- 235 (398)
T PLN00033 160 -HTSDGGETWERIPLSPKLPGEPVLIKATGPKS-AEMVTDEGAIYVTSNAGRNWKAAVEETVSATLNRTVSSGISGAS-- 235 (398)
T ss_pred -EEcCCCCCceECccccCCCCCceEEEEECCCc-eEEEeccceEEEECCCCCCceEcccccccccccccccccccccc--
Confidence 344443 3332211 111112222233333 33445777765433 245543111100 000 000000 00
Q ss_pred ccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCce-eeeecCCCCceeEEEEccCCCeEEEEecCCCCCC
Q 000731 170 SSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTL-QASSELKAFMGAVLEWMPSGANIAAVYDRKSENK 248 (1325)
Q Consensus 170 ~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l-~~t~e~~~~~v~~lawsPdG~~IAs~~~d~~~~~ 248 (1325)
..++....+.-++||.+++ ++.. ...++-||. .+.. .....+....+.+++|.++|.++.++..
T Consensus 236 -~y~Gsf~~v~~~~dG~~~~-vg~~------G~~~~s~d~-G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~~------ 300 (398)
T PLN00033 236 -YYTGTFSTVNRSPDGDYVA-VSSR------GNFYLTWEP-GQPYWQPHNRASARRIQNMGWRADGGLWLLTRG------ 300 (398)
T ss_pred -eeccceeeEEEcCCCCEEE-EECC------ccEEEecCC-CCcceEEecCCCccceeeeeEcCCCCEEEEeCC------
Confidence 1123346677889999988 7631 244555654 2222 3333344556789999999999887754
Q ss_pred CCeEEEEeCCCceEE---EEEe-ccC-CCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeE
Q 000731 249 CPSIVFYERNGLERS---SFDI-NEQ-IDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWY 310 (1325)
Q Consensus 249 ~~~V~~~e~nGl~~~---~f~l-~~~-~~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~n~~wy 310 (1325)
+. .++.+++-... +|.. +.. ....+.++.|.+|++.++++.. + .+....-...+|.
T Consensus 301 -G~-l~~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~-G---~v~~s~D~G~tW~ 361 (398)
T PLN00033 301 -GG-LYVSKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAGGS-G---ILLRSTDGGKSWK 361 (398)
T ss_pred -ce-EEEecCCCCcccccceeecccCCCCcceEEEEEcCCCcEEEEECC-C---cEEEeCCCCccee
Confidence 23 34544332211 2321 111 1235889999999998888754 3 3555444455663
No 426
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.85 E-value=8.4 Score=44.16 Aligned_cols=166 Identities=15% Similarity=0.121 Sum_probs=99.0
Q ss_pred ceeEEeeecCCCEEEEEeCCC-cEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEE
Q 000731 22 ILQFSALDIEQNRLFFASSAN-NIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLL 100 (1325)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~-~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~V~~v~~spdg~~La~as~dG~I~ 100 (1325)
.+.+++|++++++||++.+.. .|++.+. .++. +.++| |.++ .-.-+|.|.-+|+..++-=.++.+.
T Consensus 87 nvS~LTynp~~rtLFav~n~p~~iVElt~---~Gdl---irtiP--L~g~-----~DpE~Ieyig~n~fvi~dER~~~l~ 153 (316)
T COG3204 87 NVSSLTYNPDTRTLFAVTNKPAAIVELTK---EGDL---IRTIP--LTGF-----SDPETIEYIGGNQFVIVDERDRALY 153 (316)
T ss_pred cccceeeCCCcceEEEecCCCceEEEEec---CCce---EEEec--cccc-----CChhHeEEecCCEEEEEehhcceEE
Confidence 688899999999999997644 6777766 5554 34444 2221 3456788998888777666677777
Q ss_pred EEeCC--CCeE-----E-Eec---eecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCce-eeeeeccccC-CC--ceec
Q 000731 101 LHSVD--GNAT-----E-VVG---RVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDL-LYENPLEELA-EG--FDVH 165 (1325)
Q Consensus 101 lw~~~--~~~~-----e-~vg---~~~~~I~~~awSPDG~~LA~~s~dgtV~l~s~~~d~-~~e~~l~~~~-~~--~~Vs 165 (1325)
+..++ +..+ + .+| +-..|...+||+|+++.|-.+-+-+-+.+..-...+ .-..+..... .. -++
T Consensus 154 ~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~- 232 (316)
T COG3204 154 LFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFV- 232 (316)
T ss_pred EEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEe-
Confidence 75543 3211 1 112 115678899999999999999887766654322111 0011111110 00 011
Q ss_pred cCccccCCCCeEEEEEecC-CcEEEEeeccccccCCCCEEEEEECCCCceeee
Q 000731 166 EPELSSSFSFKSPISWRGD-GKYFATLSEFCNSSKLHKRLKVWERDSGTLQAS 217 (1325)
Q Consensus 166 ~tqf~~~~~~i~~isWspD-G~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t 217 (1325)
..+.++.+.+. |..++ .| .+.+.+.--|+ +|.....
T Consensus 233 --------~DvSgl~~~~~~~~LLV-LS------~ESr~l~Evd~-~G~~~~~ 269 (316)
T COG3204 233 --------LDVSGLEFNAITNSLLV-LS------DESRRLLEVDL-SGEVIEL 269 (316)
T ss_pred --------eccccceecCCCCcEEE-Ee------cCCceEEEEec-CCCeeee
Confidence 23466777654 45555 54 23577777788 7775443
No 427
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=92.83 E-value=2.4 Score=50.23 Aligned_cols=58 Identities=24% Similarity=0.291 Sum_probs=39.8
Q ss_pred CEEEEEEccCCCEEEEEECCCcEEEEeCCCCe---EEEe----ceecCcEEEEEEcCC----CCeEEEEe
Q 000731 77 SITAFDYLMEKEALIVGTSSGLLLLHSVDGNA---TEVV----GRVEGGVRFISPSPD----GDLLGVTT 135 (1325)
Q Consensus 77 ~V~~v~~spdg~~La~as~dG~I~lw~~~~~~---~e~v----g~~~~~I~~~awSPD----G~~LA~~s 135 (1325)
.+++|+|.|||+.++ +...|+|.+++.++.. +..+ ..-+.+...+++.|+ +.+.++-+
T Consensus 3 ~P~~~a~~pdG~l~v-~e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t 71 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLV-AERSGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYT 71 (331)
T ss_dssp SEEEEEEETTSCEEE-EETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEE
T ss_pred CceEEEEeCCCcEEE-EeCCceEEEEeCCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEE
Confidence 589999999998876 4669999999955533 2111 223568999999996 55555555
No 428
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=92.76 E-value=2.7 Score=50.63 Aligned_cols=153 Identities=15% Similarity=0.099 Sum_probs=78.8
Q ss_pred CCEEEEEEccCCCEEEEEE-----------CCC-cEEEEeCC-C-Ce---EEEeceecCcEEEEEEcCCCCeEEEEeCCc
Q 000731 76 DSITAFDYLMEKEALIVGT-----------SSG-LLLLHSVD-G-NA---TEVVGRVEGGVRFISPSPDGDLLGVTTGFG 138 (1325)
Q Consensus 76 ~~V~~v~~spdg~~La~as-----------~dG-~I~lw~~~-~-~~---~e~vg~~~~~I~~~awSPDG~~LA~~s~dg 138 (1325)
..++.|+|.++|+.+++-. ..| .|.+++-. + ++ .+.+..--.....++|.||| ++++ .. .
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV~-~~-~ 90 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYVA-TP-P 90 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEEe-CC-C
Confidence 4789999999999877642 234 67777542 2 22 23332212346789999999 5543 33 3
Q ss_pred cEEEE-eecCceee----eeeccccCCCceeccCccccCCCCeEEEEEecCCcEEEEeecccc----------c--cCCC
Q 000731 139 QILVM-THDWDLLY----ENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCN----------S--SKLH 201 (1325)
Q Consensus 139 tV~l~-s~~~d~~~----e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~----------~--~~~d 201 (1325)
.|..+ +.+.+-.. +.-+.... ..-..+......+.|.|||.+.++.++... . ....
T Consensus 91 ~i~~~~d~~gdg~ad~~~~~l~~~~~-------~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~ 163 (367)
T TIGR02604 91 DILFLRDKDGDDKADGEREVLLSGFG-------GQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLG 163 (367)
T ss_pred eEEEEeCCCCCCCCCCccEEEEEccC-------CCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccC
Confidence 45433 33322111 11111000 000001123578999999997664553100 0 0011
Q ss_pred CEEEEEECCCCceeeeecCCCCceeEEEEccCCCeEEE
Q 000731 202 KRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAA 239 (1325)
Q Consensus 202 ~~irVWd~~~G~l~~t~e~~~~~v~~lawsPdG~~IAs 239 (1325)
+.|.-++++++++.....+... ...++|+|+|+++++
T Consensus 164 g~i~r~~pdg~~~e~~a~G~rn-p~Gl~~d~~G~l~~t 200 (367)
T TIGR02604 164 GGLFRYNPDGGKLRVVAHGFQN-PYGHSVDSWGDVFFC 200 (367)
T ss_pred ceEEEEecCCCeEEEEecCcCC-CccceECCCCCEEEE
Confidence 4455567744444333333322 267888888888765
No 429
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=92.68 E-value=5.3 Score=49.22 Aligned_cols=53 Identities=13% Similarity=0.166 Sum_probs=38.8
Q ss_pred CCEEEEEEccCCCEEEEEECCCcEEEEeCCCCeEE-------Ee-ceecCcEEEEEEcCCC
Q 000731 76 DSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATE-------VV-GRVEGGVRFISPSPDG 128 (1325)
Q Consensus 76 ~~V~~v~~spdg~~La~as~dG~I~lw~~~~~~~e-------~v-g~~~~~I~~~awSPDG 128 (1325)
+.+++|+|.|||+.|++--..|.|++++..++... .+ ..-++|...++++||-
T Consensus 30 ~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 30 NKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 47899999999988766544699999987653221 11 1126889999999995
No 430
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=92.67 E-value=0.49 Score=54.35 Aligned_cols=131 Identities=11% Similarity=0.098 Sum_probs=81.9
Q ss_pred CCCCCCEEEEEEccCCCEEEEEECCCcEEEEeCCCC-----eEEEeceecCcEEEEEEcC-CCCeEEEEeCCccEEEEee
Q 000731 72 LEPGDSITAFDYLMEKEALIVGTSSGLLLLHSVDGN-----ATEVVGRVEGGVRFISPSP-DGDLLGVTTGFGQILVMTH 145 (1325)
Q Consensus 72 ~~~~~~V~~v~~spdg~~La~as~dG~I~lw~~~~~-----~~e~vg~~~~~I~~~awSP-DG~~LA~~s~dgtV~l~s~ 145 (1325)
|...+.|.+.+|.-.+..+..|-.+|.|..+|+..+ .....=.|+..|+++..=- +++.|...+-+|+|++|+.
T Consensus 249 f~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~ 328 (425)
T KOG2695|consen 249 FQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDL 328 (425)
T ss_pred cccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhccccceEeeccCcCceeEeee
Confidence 334467889999998999999999999999998642 1223334688899887765 6788888889999999863
Q ss_pred cCceeeeeeccccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeec
Q 000731 146 DWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSE 219 (1325)
Q Consensus 146 ~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e 219 (1325)
-.. ...+.+.+.. +||++.. -.-+--.+.-..++++ +.|.-.|||....|.++.+..
T Consensus 329 R~~-K~~~~V~qYe--GHvN~~a-------~l~~~v~~eeg~I~s~-------GdDcytRiWsl~~ghLl~tip 385 (425)
T KOG2695|consen 329 RAT-KCKKSVMQYE--GHVNLSA-------YLPAHVKEEEGSIFSV-------GDDCYTRIWSLDSGHLLCTIP 385 (425)
T ss_pred hhh-hcccceeeee--ccccccc-------ccccccccccceEEEc-------cCeeEEEEEecccCceeeccC
Confidence 211 0111122111 2232100 0001112222233313 357999999998999988754
No 431
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.43 E-value=6.3 Score=46.56 Aligned_cols=92 Identities=13% Similarity=0.182 Sum_probs=62.4
Q ss_pred eEEEEeCCCceEEEEEeccCCCCcEEEEEEccCCC-eeEEEEccCCCCeEEEEEeeCCeeEEEeEEEEecCCc-EEEEEc
Q 000731 251 SIVFYERNGLERSSFDINEQIDSTVELLKWNCMSD-LLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDG-IRFMWH 328 (1325)
Q Consensus 251 ~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~-~LAs~~~d~~~~~VqLW~~~n~~wylkqel~~~~~~~-~~v~Ws 328 (1325)
.|.+++.-.....+| ++.+ ...|.+|+|||..+ +|..++.+. +|+|.|+....- ...+..... ++.+|+
T Consensus 174 Gv~~l~~~~fkssq~-lp~~-g~~IrdlafSp~~~GLl~~asl~n---kiki~dlet~~~----vssy~a~~~~wSC~wD 244 (463)
T KOG1645|consen 174 GVQKLESHDFKSSQI-LPGE-GSFIRDLAFSPFNEGLLGLASLGN---KIKIMDLETSCV----VSSYIAYNQIWSCCWD 244 (463)
T ss_pred ceEEeccCCcchhhc-cccc-chhhhhhccCccccceeeeeccCc---eEEEEeccccee----eeheeccCCceeeeec
Confidence 366776543333332 3322 34699999999998 677777776 899999875321 222222233 999999
Q ss_pred cCCCcEEEEEecCCcEEEEEEEE
Q 000731 329 PTKPLQLICWTLDGQITTYNFIW 351 (1325)
Q Consensus 329 p~~~~~L~~~~~~g~~~~~~~~~ 351 (1325)
-+....++.+..+|.+.+++...
T Consensus 245 lde~h~IYaGl~nG~VlvyD~R~ 267 (463)
T KOG1645|consen 245 LDERHVIYAGLQNGMVLVYDMRQ 267 (463)
T ss_pred cCCcceeEEeccCceEEEEEccC
Confidence 99988888998899888776543
No 432
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=92.39 E-value=3 Score=46.33 Aligned_cols=22 Identities=14% Similarity=0.092 Sum_probs=12.0
Q ss_pred hccccHHHhhcCHHHHHHHHHH
Q 000731 935 LMRYTIDLRLQRFENALKHIVS 956 (1325)
Q Consensus 935 ~~~~~Id~~L~rye~Al~~l~~ 956 (1325)
+.........|+|++|+..|.+
T Consensus 37 ~~~g~~~~~~~~~~~A~~~~~~ 58 (235)
T TIGR03302 37 YEEAKEALDSGDYTEAIKYFEA 58 (235)
T ss_pred HHHHHHHHHcCCHHHHHHHHHH
Confidence 3333444445666666666653
No 433
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=92.34 E-value=33 Score=41.80 Aligned_cols=217 Identities=16% Similarity=0.183 Sum_probs=112.5
Q ss_pred eeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEEE
Q 000731 23 LQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLH 102 (1325)
Q Consensus 23 ~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~V~~v~~spdg~~La~as~dG~I~lw 102 (1325)
..+++++ ++..+++.+.+.|+.-.- .++ .|.....+ +..|. ....+....++... +++..|.|..-
T Consensus 139 l~~v~f~--~~~g~~vG~~G~il~T~D---gG~-tW~~~~~~------~~~p~-~~~~i~~~~~~~~~-ivg~~G~v~~S 204 (398)
T PLN00033 139 FNSISFK--GKEGWIIGKPAILLHTSD---GGE-TWERIPLS------PKLPG-EPVLIKATGPKSAE-MVTDEGAIYVT 204 (398)
T ss_pred eeeeEEE--CCEEEEEcCceEEEEEcC---CCC-CceECccc------cCCCC-CceEEEEECCCceE-EEeccceEEEE
Confidence 4555564 466888887775554332 222 25432111 01122 22344444444433 44478886553
Q ss_pred eCCCCeEEEe--c------------------eecCcEEEEEEcCCCCeEEEEeCCccEEE-Eee---cCceeeeeecccc
Q 000731 103 SVDGNATEVV--G------------------RVEGGVRFISPSPDGDLLGVTTGFGQILV-MTH---DWDLLYENPLEEL 158 (1325)
Q Consensus 103 ~~~~~~~e~v--g------------------~~~~~I~~~awSPDG~~LA~~s~dgtV~l-~s~---~~d~~~e~~l~~~ 158 (1325)
+-.+...+.+ + -..+....+.-+|||.+++.+.. |.+.. |+. .|.++. .
T Consensus 205 ~D~G~tW~~~~~~t~~~~l~~~~~s~~~g~~~y~Gsf~~v~~~~dG~~~~vg~~-G~~~~s~d~G~~~W~~~~---~--- 277 (398)
T PLN00033 205 SNAGRNWKAAVEETVSATLNRTVSSGISGASYYTGTFSTVNRSPDGDYVAVSSR-GNFYLTWEPGQPYWQPHN---R--- 277 (398)
T ss_pred CCCCCCceEcccccccccccccccccccccceeccceeeEEEcCCCCEEEEECC-ccEEEecCCCCcceEEec---C---
Confidence 3222222211 0 11234555678899887776543 44432 211 033221 1
Q ss_pred CCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceee--eec----C-CCCceeEEEEc
Q 000731 159 AEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQA--SSE----L-KAFMGAVLEWM 231 (1325)
Q Consensus 159 ~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~--t~e----~-~~~~v~~laws 231 (1325)
+....+..+.|++||..+. ++. .+.+ +|..+.|+.-. .+. + ....+.++.|.
T Consensus 278 ------------~~~~~l~~v~~~~dg~l~l-~g~-------~G~l-~~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~ 336 (398)
T PLN00033 278 ------------ASARRIQNMGWRADGGLWL-LTR-------GGGL-YVSKGTGLTEEDFDFEEADIKSRGFGILDVGYR 336 (398)
T ss_pred ------------CCccceeeeeEcCCCCEEE-EeC-------CceE-EEecCCCCcccccceeecccCCCCcceEEEEEc
Confidence 1123568899999999887 542 2343 45665664221 111 1 11246889999
Q ss_pred cCCCeEEEEecCCCCCCCCeEEEEeCCCceEEEEEec---cCCCCcEEEEEEccCCCeeEEEE
Q 000731 232 PSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDIN---EQIDSTVELLKWNCMSDLLAAVV 291 (1325)
Q Consensus 232 PdG~~IAs~~~d~~~~~~~~V~~~e~nGl~~~~f~l~---~~~~~~V~~laWSpDg~~LAs~~ 291 (1325)
++++.+++|.. + +++...+|-.+ |... ..-....+.+.|.++++..+++.
T Consensus 337 ~d~~~~a~G~~-------G-~v~~s~D~G~t--W~~~~~~~~~~~~ly~v~f~~~~~g~~~G~ 389 (398)
T PLN00033 337 SKKEAWAAGGS-------G-ILLRSTDGGKS--WKRDKGADNIAANLYSVKFFDDKKGFVLGN 389 (398)
T ss_pred CCCcEEEEECC-------C-cEEEeCCCCcc--eeEccccCCCCcceeEEEEcCCCceEEEeC
Confidence 99999998865 2 33444433222 2221 11134588999999888887764
No 434
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=92.16 E-value=0.71 Score=59.87 Aligned_cols=114 Identities=11% Similarity=-0.045 Sum_probs=72.1
Q ss_pred hhccccHHHhhcCHHHHHHHHHHcC---CCcHHHHHH---HHHHHhcChHHHHhhc-----CCcHHHHHHHHHHHHHHhc
Q 000731 934 LLMRYTIDLRLQRFENALKHIVSMG---DSYHADCLN---LMKKYAQLFPLGLKLI-----TDPAKMEQVLEAWADHLSD 1002 (1325)
Q Consensus 934 ~~~~~~Id~~L~rye~Al~~l~~~g---~~~~d~ale---~~~~~~~ly~~AL~L~-----~d~~~~~~i~~~~a~~L~~ 1002 (1325)
.+.-+.|-..+|||++|+.+|..+= +++...-+. ..++. +-|++|+..+ .+|+.. ......|.-|..
T Consensus 89 ~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~-~~~eeA~~~~~~~l~~~p~~~-~~~~~~a~~l~~ 166 (694)
T PRK15179 89 QVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQ-QGIEAGRAEIELYFSGGSSSA-REILLEAKSWDE 166 (694)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh-ccHHHHHHHHHHHhhcCCCCH-HHHHHHHHHHHH
Confidence 4555688889999999999998763 443332233 33677 8899999877 455433 344456666666
Q ss_pred cccHHHHHHHHHHcCCHHHHHHHHHHcCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000731 1003 VKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALD 1075 (1325)
Q Consensus 1003 ~~~~~eAa~~y~~ag~~ekAl~~y~~ag~W~~al~la~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~ 1075 (1325)
.++|++|..+|.++- . ..+-+ ......+|..|.+.|+.++|...|.+
T Consensus 167 ~g~~~~A~~~y~~~~-------------------~---~~p~~----~~~~~~~a~~l~~~G~~~~A~~~~~~ 213 (694)
T PRK15179 167 IGQSEQADACFERLS-------------------R---QHPEF----ENGYVGWAQSLTRRGALWRARDVLQA 213 (694)
T ss_pred hcchHHHHHHHHHHH-------------------h---cCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 666655555554432 1 21211 24556777788888888888777766
No 435
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=92.10 E-value=34 Score=41.42 Aligned_cols=106 Identities=11% Similarity=0.095 Sum_probs=57.7
Q ss_pred CCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCC--CEEEEEEccCCCEEEEEECCCcEEEEeCCCCe
Q 000731 31 EQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGD--SITAFDYLMEKEALIVGTSSGLLLLHSVDGNA 108 (1325)
Q Consensus 31 ~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~--~V~~v~~spdg~~La~as~dG~I~lw~~~~~~ 108 (1325)
.++.||+.+.++.++.+|. .+++..|+.. ++.. ..+.+.. ...+-.-.-++..+.+++.+|.+.-+|.++++
T Consensus 68 ~~~~vy~~~~~g~l~ald~--~tG~~~W~~~-~~~~---~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~ 141 (394)
T PRK11138 68 AYNKVYAADRAGLVKALDA--DTGKEIWSVD-LSEK---DGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGE 141 (394)
T ss_pred ECCEEEEECCCCeEEEEEC--CCCcEeeEEc-CCCc---ccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCC
Confidence 5789999999888999999 7888888754 1110 0010000 00000001135677788889999999988765
Q ss_pred EEEeceecCcEEE-EEEcCCCCeEEEEeCCccEEEEe
Q 000731 109 TEVVGRVEGGVRF-ISPSPDGDLLGVTTGFGQILVMT 144 (1325)
Q Consensus 109 ~e~vg~~~~~I~~-~awSPDG~~LA~~s~dgtV~l~s 144 (1325)
+.-.-...+.+.+ ... .+..|.+++.++.|.-++
T Consensus 142 ~~W~~~~~~~~~ssP~v--~~~~v~v~~~~g~l~ald 176 (394)
T PRK11138 142 VAWQTKVAGEALSRPVV--SDGLVLVHTSNGMLQALN 176 (394)
T ss_pred CcccccCCCceecCCEE--ECCEEEEECCCCEEEEEE
Confidence 4211111122221 111 134555566677665544
No 436
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=92.03 E-value=1.1 Score=49.47 Aligned_cols=101 Identities=17% Similarity=0.097 Sum_probs=73.5
Q ss_pred ChHHHHhhcCCcHHHHHHHHHHHHHHhccccHHHHHHHHHHc----------CCHHHHHHHHHHcCCHHHHHHHHhh-cC
Q 000731 975 LFPLGLKLITDPAKMEQVLEAWADHLSDVKCFEDAATTYFCC----------SSLEKAMKAYRASGNWSGVLTVAGL-LK 1043 (1325)
Q Consensus 975 ly~~AL~L~~d~~~~~~i~~~~a~~L~~~~~~~eAa~~y~~a----------g~~ekAl~~y~~ag~W~~al~la~~-l~ 1043 (1325)
.|.+||.+-. .--+|++-||-||..+++|++|-..|++| +-++-+--|..++|+...|...-++ +.
T Consensus 91 ~YrkAlsl~p---~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~ 167 (250)
T COG3063 91 SYRKALSLAP---NNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE 167 (250)
T ss_pred HHHHHHhcCC---CccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH
Confidence 3777888761 12358999999999999999999999987 4567778888888887777443332 22
Q ss_pred CCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcCC
Q 000731 1044 LGKDEVAKLAQELCEELQALGKPGEAAKIALDYCGD 1079 (1325)
Q Consensus 1044 ~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~yl~d 1079 (1325)
.++.. ..-..++|..+...|+|.+|-..+.+|.+-
T Consensus 168 ~dp~~-~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~ 202 (250)
T COG3063 168 LDPQF-PPALLELARLHYKAGDYAPARLYLERYQQR 202 (250)
T ss_pred hCcCC-ChHHHHHHHHHHhcccchHHHHHHHHHHhc
Confidence 22221 234567888888999999998888887543
No 437
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=92.03 E-value=0.81 Score=45.96 Aligned_cols=59 Identities=22% Similarity=0.231 Sum_probs=47.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHcCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHh
Q 000731 1008 DAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALDY 1076 (1325)
Q Consensus 1008 eAa~~y~~ag~~ekAl~~y~~ag~W~~al~la~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~y 1076 (1325)
+.+.+|...|+.++|+..|.++ +. .+++.+........++..|...|++++|..++.+-
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~A------l~----~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~ 64 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRA------LA----AGLSGADRRRALIQLASTLRNLGRYDEALALLEEA 64 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHH------HH----cCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5678899999999999999654 32 24455566678889999999999999999998773
No 438
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=91.98 E-value=0.69 Score=42.03 Aligned_cols=60 Identities=22% Similarity=0.196 Sum_probs=38.5
Q ss_pred HHHHHHcCCHHHHHHHHHHcCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000731 1010 ATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALD 1075 (1325)
Q Consensus 1010 a~~y~~ag~~ekAl~~y~~ag~W~~al~la~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~ 1075 (1325)
+.+|...|++++|+++| ++++.+.+.++-+..++...+..+|..+...|++++|.+.|.+
T Consensus 12 a~~~~~~~~~~~A~~~~------~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~ 71 (78)
T PF13424_consen 12 ARVYRELGRYDEALDYY------EKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQK 71 (78)
T ss_dssp HHHHHHTT-HHHHHHHH------HHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHH------HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 44555556666666665 4455554455433334566778888888888888888888766
No 439
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=91.96 E-value=2.1 Score=44.85 Aligned_cols=50 Identities=20% Similarity=0.304 Sum_probs=30.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhcCHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHH
Q 000731 1066 PGEAAKIALDYCGDVTNGISLLIDARDWEEALRVAFMHRREDLITKVKHASLECASSLIGEYKE 1129 (1325)
Q Consensus 1066 ~~eAa~i~~~yl~d~e~Av~~~~~~~~w~eA~rLa~~~~~~dL~e~v~~~l~e~~~~~~e~l~~ 1129 (1325)
|.-|+.+|+. +|+.+.|.+.+ +.|+..|..++ + ...+.+.++..++.|.|
T Consensus 106 ~~~ag~c~L~-lG~~~~A~~aF------~~Ai~~~~~~~--~-----~~~l~~~A~~~L~~l~~ 155 (157)
T PRK15363 106 PWAAAECYLA-CDNVCYAIKAL------KAVVRICGEVS--E-----HQILRQRAEKMLQQLSD 155 (157)
T ss_pred HHHHHHHHHH-cCCHHHHHHHH------HHHHHHhccCh--h-----HHHHHHHHHHHHHHhhc
Confidence 4457788888 88888888765 44555553332 2 23455666666665544
No 440
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=91.95 E-value=33 Score=43.23 Aligned_cols=56 Identities=27% Similarity=0.252 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHhcCC--------HHHHHHHHHHhcCHHHHHHHHHhcCCch
Q 000731 1051 KLAQELCEELQALGKPGEAAKIALDYCGD--------VTNGISLLIDARDWEEALRVAFMHRRED 1107 (1325)
Q Consensus 1051 ~l~~~la~~L~~~~~~~eAa~i~~~yl~d--------~e~Av~~~~~~~~w~eA~rLa~~~~~~d 1107 (1325)
+++..-|..|...|++.+|++.+.. +.. -..++..+.++++.++|..++....+.+
T Consensus 229 ely~~KarilKh~G~~~~Aa~~~~~-Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~ 292 (517)
T PF12569_consen 229 ELYMTKARILKHAGDLKEAAEAMDE-ARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTRED 292 (517)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHH-HHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCC
Confidence 5666666666666666666666544 321 1355666666666666666666655433
No 441
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=91.88 E-value=0.99 Score=57.62 Aligned_cols=157 Identities=11% Similarity=0.037 Sum_probs=97.1
Q ss_pred ecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeecCCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEEEeCCCce
Q 000731 182 RGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLE 261 (1325)
Q Consensus 182 spDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~~~v~~lawsPdG~~IAs~~~d~~~~~~~~V~~~e~nGl~ 261 (1325)
+-+|++|- ++. ..|+|-+-|..+-+.+.++..|.+.+.+ |.-.||+|++++.. -++..
T Consensus 184 R~Nnr~lf-~G~------t~G~V~LrD~~s~~~iht~~aHs~siSD--fDv~GNlLitCG~S--------~R~~~----- 241 (1118)
T KOG1275|consen 184 RYNNRNLF-CGD------TRGTVFLRDPNSFETIHTFDAHSGSISD--FDVQGNLLITCGYS--------MRRYN----- 241 (1118)
T ss_pred EecCcEEE-eec------ccceEEeecCCcCceeeeeeccccceee--eeccCCeEEEeecc--------ccccc-----
Confidence 45666665 542 3477888887777777777777776544 56678887777652 11110
Q ss_pred EEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeEEEeEEEEecCCcEEEEEccCCCcEEEEEecC
Q 000731 262 RSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLD 341 (1325)
Q Consensus 262 ~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~n~~wylkqel~~~~~~~~~v~Wsp~~~~~L~~~~~~ 341 (1325)
+ + -|. =|++||+.++... --+.++ .++..+.|+|.-+.++++.+++
T Consensus 242 -----l-----------~------------~D~---FvkVYDLRmmral--~PI~~~-~~P~flrf~Psl~t~~~V~S~s 287 (1118)
T KOG1275|consen 242 -----L-----------A------------MDP---FVKVYDLRMMRAL--SPIQFP-YGPQFLRFHPSLTTRLAVTSQS 287 (1118)
T ss_pred -----c-----------c------------ccc---hhhhhhhhhhhcc--CCcccc-cCchhhhhcccccceEEEEecc
Confidence 0 0 111 4888888876421 123332 2336788999888888888888
Q ss_pred CcEEEEEEEEeeeeCCCeeEEEEeCCEEEEeecCCcCCCCCceeeee-cCCCCEEEEEEecCCCCCEEEEEECCCcEEEE
Q 000731 342 GQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSL-KFPTAVTEMAFYSKSSKNCLAAILSDGCLCVV 420 (1325)
Q Consensus 342 g~~~~~~~~~~~~~~d~~~v~viDG~~l~lt~l~~~~vPpPm~~~~l-~~~~~V~~VaFSpdg~~~~LAs~s~Dgti~lw 420 (1325)
|+....+- +. +.- ||...+.+ ...+.+....+|++| +.||.+.++|.|.+|
T Consensus 288 Gq~q~vd~---~~----------------------lsN-P~~~~~~v~p~~s~i~~fDiSsn~--~alafgd~~g~v~~w 339 (1118)
T KOG1275|consen 288 GQFQFVDT---AT----------------------LSN-PPAGVKMVNPNGSGISAFDISSNG--DALAFGDHEGHVNLW 339 (1118)
T ss_pred cceeeccc---cc----------------------cCC-CccceeEEccCCCcceeEEecCCC--ceEEEecccCcEeee
Confidence 87643220 00 001 11221122 234458889999999 999999999999999
Q ss_pred eC
Q 000731 421 DL 422 (1325)
Q Consensus 421 ~~ 422 (1325)
.-
T Consensus 340 a~ 341 (1118)
T KOG1275|consen 340 AD 341 (1118)
T ss_pred cC
Confidence 83
No 442
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.87 E-value=1.9 Score=56.26 Aligned_cols=99 Identities=15% Similarity=0.101 Sum_probs=63.5
Q ss_pred CCCeEEEEecCCCCCCCCeEEEEeCCCceEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeCCeeEEE
Q 000731 233 SGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLK 312 (1325)
Q Consensus 233 dG~~IAs~~~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~n~~wylk 312 (1325)
.+..||.|++. +.|..++.+|... .+.-.....+.|.+++||.||++|+.|..+| .|.+||+.+..-+
T Consensus 98 ~~~~ivi~Ts~------ghvl~~d~~~nL~-~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G---~V~v~D~~~~k~l-- 165 (1206)
T KOG2079|consen 98 VVVPIVIGTSH------GHVLLSDMTGNLG-PLHQNERVQGPVTSVAFNQDGSLLLAGLGDG---HVTVWDMHRAKIL-- 165 (1206)
T ss_pred eeeeEEEEcCc------hhhhhhhhhcccc-hhhcCCccCCcceeeEecCCCceeccccCCC---cEEEEEccCCcce--
Confidence 34567777764 4477777666321 1111122356899999999999999999988 8999999885432
Q ss_pred eEEEEecC--Cc-EEEEEccCCCcEEEEEecCCcE
Q 000731 313 YEIRYLRR--DG-IRFMWHPTKPLQLICWTLDGQI 344 (1325)
Q Consensus 313 qel~~~~~--~~-~~v~Wsp~~~~~L~~~~~~g~~ 344 (1325)
+.+..+.. .+ ..+.|..++. .+......|.+
T Consensus 166 ~~i~e~~ap~t~vi~v~~t~~nS-~llt~D~~Gsf 199 (1206)
T KOG2079|consen 166 KVITEHGAPVTGVIFVGRTSQNS-KLLTSDTGGSF 199 (1206)
T ss_pred eeeeecCCccceEEEEEEeCCCc-EEEEccCCCce
Confidence 34444332 23 6677877766 34454445543
No 443
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=91.71 E-value=15 Score=42.65 Aligned_cols=166 Identities=15% Similarity=0.177 Sum_probs=98.9
Q ss_pred hHHHHHHHHhcCCcccchHhHHHHhcCCchhccccHHHhhcCHHHHHHHHHHcCC--CcH----HHHHHHHHHHhcChHH
Q 000731 905 NLAAIVALNSQRDPKEFLPYLQELESMPPLLMRYTIDLRLQRFENALKHIVSMGD--SYH----ADCLNLMKKYAQLFPL 978 (1325)
Q Consensus 905 ~lal~VAq~sqkDPkeYLpfL~~L~~l~~~~~~~~Id~~L~rye~Al~~l~~~g~--~~~----d~ale~~~~~~~ly~~ 978 (1325)
|=|+.|=|.--.-|. ++|=|++..+-..-+.|.. -|=|+.|...|...-+ +.. ...+..+..- +.|++
T Consensus 86 DRAIRiHQ~L~~spd--lT~~qr~lAl~qL~~Dym~---aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~t-reW~K 159 (389)
T COG2956 86 DRAIRIHQTLLESPD--LTFEQRLLALQQLGRDYMA---AGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQAT-REWEK 159 (389)
T ss_pred HHHHHHHHHHhcCCC--CchHHHHHHHHHHHHHHHH---hhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHh-hHHHH
Confidence 444555455445555 7777887776555555555 3557888888876632 222 3445667888 89999
Q ss_pred HHhhc-----CCc----HHHHHHHHHHHHHHhccccHHHHHHHHHHcCCH-HHHH-------HHHHHcCCHHHHHHHHh-
Q 000731 979 GLKLI-----TDP----AKMEQVLEAWADHLSDVKCFEDAATTYFCCSSL-EKAM-------KAYRASGNWSGVLTVAG- 1040 (1325)
Q Consensus 979 AL~L~-----~d~----~~~~~i~~~~a~~L~~~~~~~eAa~~y~~ag~~-ekAl-------~~y~~ag~W~~al~la~- 1040 (1325)
|++.. .++ -+...++.++|+.+.-..+++.|.....+|-.- .+.+ +.+..-|+++.|+..-.
T Consensus 160 AId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~ 239 (389)
T COG2956 160 AIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALER 239 (389)
T ss_pred HHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHH
Confidence 99865 222 357788999999999999999987776665110 0111 22223333444432111
Q ss_pred hcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHh
Q 000731 1041 LLKLGKDEVAKLAQELCEELQALGKPGEAAKIALDY 1076 (1325)
Q Consensus 1041 ~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~y 1076 (1325)
.+.-+++=+.+++..|.+...+.|+..+....+.++
T Consensus 240 v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~ 275 (389)
T COG2956 240 VLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRA 275 (389)
T ss_pred HHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 111144445566666666666677777766665553
No 444
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=91.69 E-value=3 Score=56.41 Aligned_cols=25 Identities=8% Similarity=0.102 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHH
Q 000731 1051 KLAQELCEELQALGKPGEAAKIALD 1075 (1325)
Q Consensus 1051 ~l~~~la~~L~~~~~~~eAa~i~~~ 1075 (1325)
.+...+++.+.+.|++.+|.+++.+
T Consensus 248 ~l~~ala~~yi~~G~~~~A~~~L~~ 272 (987)
T PRK09782 248 QSRITYATALAYRGEKARLQHYLIE 272 (987)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 3555666666666666666666655
No 445
>PRK13684 Ycf48-like protein; Provisional
Probab=91.67 E-value=33 Score=40.80 Aligned_cols=164 Identities=15% Similarity=0.166 Sum_probs=88.6
Q ss_pred EEECCCcEEEEeCCC-CeEEEe-ceecCcEEEEEEcCCCCeEEEEeCCccEEEEe----ecCceeeeeeccccCCCceec
Q 000731 92 VGTSSGLLLLHSVDG-NATEVV-GRVEGGVRFISPSPDGDLLGVTTGFGQILVMT----HDWDLLYENPLEELAEGFDVH 165 (1325)
Q Consensus 92 ~as~dG~I~lw~~~~-~~~e~v-g~~~~~I~~~awSPDG~~LA~~s~dgtV~l~s----~~~d~~~e~~l~~~~~~~~Vs 165 (1325)
+++..|.|.. ..++ ...+.+ ....+.+.++.++|||..++ ++..|.+..-. +.|..+..
T Consensus 147 ~~g~~G~i~~-S~DgG~tW~~~~~~~~g~~~~i~~~~~g~~v~-~g~~G~i~~s~~~gg~tW~~~~~------------- 211 (334)
T PRK13684 147 MATNVGAIYR-TTDGGKNWEALVEDAAGVVRNLRRSPDGKYVA-VSSRGNFYSTWEPGQTAWTPHQR------------- 211 (334)
T ss_pred eeeccceEEE-ECCCCCCceeCcCCCcceEEEEEECCCCeEEE-EeCCceEEEEcCCCCCeEEEeeC-------------
Confidence 4455666643 3333 344422 22246689999999986654 45556664321 12332211
Q ss_pred cCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeee-ecC---CCCceeEEEEccCCCeEEEEe
Q 000731 166 EPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQAS-SEL---KAFMGAVLEWMPSGANIAAVY 241 (1325)
Q Consensus 166 ~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t-~e~---~~~~v~~lawsPdG~~IAs~~ 241 (1325)
+....+..+.+.++|+.++ ++. .+.+++=+.+.|..-.. ..+ ......+++|.|+|..++++.
T Consensus 212 -----~~~~~l~~i~~~~~g~~~~-vg~-------~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~ 278 (334)
T PRK13684 212 -----NSSRRLQSMGFQPDGNLWM-LAR-------GGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGGG 278 (334)
T ss_pred -----CCcccceeeeEcCCCCEEE-Eec-------CCEEEEccCCCCCccccccCCccccccceeeEEEcCCCCEEEEcC
Confidence 1123568899999999877 652 25554323445543221 111 112357899999999888775
Q ss_pred cCCCCCCCCeEEEEeCCCceEEEEEecc--CCCCcEEEEEEccCCCeeEEEEc
Q 000731 242 DRKSENKCPSIVFYERNGLERSSFDINE--QIDSTVELLKWNCMSDLLAAVVR 292 (1325)
Q Consensus 242 ~d~~~~~~~~V~~~e~nGl~~~~f~l~~--~~~~~V~~laWSpDg~~LAs~~~ 292 (1325)
. + .++...+|-.+-+ .++. ........+.|-.+++.+|++..
T Consensus 279 ~-------G-~v~~S~d~G~tW~-~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ 322 (334)
T PRK13684 279 N-------G-TLLVSKDGGKTWE-KDPVGEEVPSNFYKIVFLDPEKGFVLGQR 322 (334)
T ss_pred C-------C-eEEEeCCCCCCCe-ECCcCCCCCcceEEEEEeCCCceEEECCC
Confidence 4 2 4455555422211 1111 11235777888888888776643
No 446
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=91.62 E-value=0.29 Score=54.27 Aligned_cols=72 Identities=15% Similarity=0.147 Sum_probs=58.0
Q ss_pred CCEEEEEEccCC-CEEEEEECCCcEEEEeCCCCeE--EEeceecCcEEEEEEcC-CCCeEEEEeCCccEEEEeecC
Q 000731 76 DSITAFDYLMEK-EALIVGTSSGLLLLHSVDGNAT--EVVGRVEGGVRFISPSP-DGDLLGVTTGFGQILVMTHDW 147 (1325)
Q Consensus 76 ~~V~~v~~spdg-~~La~as~dG~I~lw~~~~~~~--e~vg~~~~~I~~~awSP-DG~~LA~~s~dgtV~l~s~~~ 147 (1325)
+.|.+++-+|-. ..+|+|+.||.|-|||...... .....|+..|+-+-|.| +++.|.++++||.+..|+...
T Consensus 180 ~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 180 DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred ccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 568888888854 5778999999999999876533 35556789999999998 589999999999998776543
No 447
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=91.58 E-value=2.3 Score=45.86 Aligned_cols=52 Identities=10% Similarity=-0.093 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHhcC----C---HHHHHHHHHHhcCHHHHHHHHHh
Q 000731 1051 KLAQELCEELQALGKPGEAAKIALDYCG----D---VTNGISLLIDARDWEEALRVAFM 1102 (1325)
Q Consensus 1051 ~l~~~la~~L~~~~~~~eAa~i~~~yl~----d---~e~Av~~~~~~~~w~eA~rLa~~ 1102 (1325)
.....++..+...|++.+|...|.+.+. + ...-..+|...++|++|.....+
T Consensus 136 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 194 (234)
T TIGR02521 136 RSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLER 194 (234)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4566678888899999999988877432 1 12333567778888888776554
No 448
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=91.51 E-value=1.1 Score=58.11 Aligned_cols=101 Identities=14% Similarity=0.197 Sum_probs=64.5
Q ss_pred CEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEEEeCCCCeEE-E
Q 000731 33 NRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATE-V 111 (1325)
Q Consensus 33 ~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~V~~v~~spdg~~La~as~dG~I~lw~~~~~~~e-~ 111 (1325)
+..|.|-+++.++.||+ .... .++. .+ ..+.+..+..-.+++=..+| .||+||.+|+|+|||.-+.... .
T Consensus 543 e~tflGls~n~lfriDp--R~~~--~k~v--~~--~~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~ 613 (794)
T PF08553_consen 543 EQTFLGLSDNSLFRIDP--RLSG--NKLV--DS--QSKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTA 613 (794)
T ss_pred CceEEEECCCceEEecc--CCCC--Ccee--ec--cccccccCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhc
Confidence 44555655566999998 3321 0111 00 11122234456777777777 6899999999999997664332 2
Q ss_pred eceecCcEEEEEEcCCCCeEEEEeCCccEEEE
Q 000731 112 VGRVEGGVRFISPSPDGDLLGVTTGFGQILVM 143 (1325)
Q Consensus 112 vg~~~~~I~~~awSPDG~~LA~~s~dgtV~l~ 143 (1325)
+.+....|..+.-|.||++|+..+ +.-+.|+
T Consensus 614 lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi 644 (794)
T PF08553_consen 614 LPGLGDPIIGIDVTADGKWILATC-KTYLLLI 644 (794)
T ss_pred CCCCCCCeeEEEecCCCcEEEEee-cceEEEE
Confidence 333467899999999999987554 4456555
No 449
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=91.50 E-value=0.49 Score=34.42 Aligned_cols=38 Identities=16% Similarity=0.219 Sum_probs=29.1
Q ss_pred ceeeeecCCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEEEe
Q 000731 213 TLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYE 256 (1325)
Q Consensus 213 ~l~~t~e~~~~~v~~lawsPdG~~IAs~~~d~~~~~~~~V~~~e 256 (1325)
++......+...+.+++|.|+++++++++.+ ..|.+|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d------~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDD------GTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCC------CeEEEcC
Confidence 3344445577788999999999999999875 4688875
No 450
>KOG2168 consensus Cullins [Cell cycle control, cell division, chromosome partitioning]
Probab=91.50 E-value=1.5 Score=56.19 Aligned_cols=112 Identities=20% Similarity=0.225 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHHHhccccHHHHHHHHHHcCCHHHHHHHHHHcCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCCh
Q 000731 987 AKMEQVLEAWADHLSDVKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKP 1066 (1325)
Q Consensus 987 ~~~~~i~~~~a~~L~~~~~~~eAa~~y~~ag~~ekAl~~y~~ag~W~~al~la~~l~~~~~~~~~l~~~la~~L~~~~~~ 1066 (1325)
+....+...-|+.+.+.|.|++|+++|..||+|.+|++...++- .+++..-..-...++.+..++..+.+.+...+-+
T Consensus 619 ~~~~~i~~~vA~~a~~~G~~~~sI~LY~lag~yd~al~link~L--S~~l~~~~~~~~n~erl~~La~~~~~~y~~~~~~ 696 (835)
T KOG2168|consen 619 EDLQKIILEVASEADEDGLFEDAILLYHLAGDYDKALELINKLL--SQVLHSPTLGQSNKERLGDLALSMNDIYESNKGD 696 (835)
T ss_pred hhHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhhHHHHHHHHHH--HHHHhhcccCCcchhhHHHHHHHHHHHHHhccCc
Confidence 45677888999999999999999999999999999998776553 2333211111224567788999999999876544
Q ss_pred HHHHHHHHH--hcCCHHHHHHHHHHhcCHHHHHHHHHh
Q 000731 1067 GEAAKIALD--YCGDVTNGISLLIDARDWEEALRVAFM 1102 (1325)
Q Consensus 1067 ~eAa~i~~~--yl~d~e~Av~~~~~~~~w~eA~rLa~~ 1102 (1325)
.+- ..+.. -+-|+-.+-+.|- .++|++|+++.+.
T Consensus 697 ~~~-~~~~t~~lLl~~~~~f~~y~-~~~~e~aL~~le~ 732 (835)
T KOG2168|consen 697 SAK-VVVKTLSLLLDLVSFFDLYH-NGEWEEALSILEH 732 (835)
T ss_pred chh-hHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHH
Confidence 432 11111 1345555555554 4579999987765
No 451
>PRK13613 lipoprotein LpqB; Provisional
Probab=91.36 E-value=11 Score=48.13 Aligned_cols=154 Identities=13% Similarity=0.096 Sum_probs=85.7
Q ss_pred cEEEEEEcCCCCeEEEEeCCccEEEEeecCceeeeeeccccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccc
Q 000731 118 GVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNS 197 (1325)
Q Consensus 118 ~I~~~awSPDG~~LA~~s~dgtV~l~s~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~ 197 (1325)
.+.+++.|+||..+|..+.++........+.. .....+. ..+ -.......-+|.++|..-. + +..
T Consensus 364 ~~~s~avS~~g~~~A~v~~~~~~l~vg~~~~~-~~~~~~~----~~~------~~~~~Lt~PS~d~~g~vWt-v---d~~ 428 (599)
T PRK13613 364 PLRRVAVSRDESRAAGISADGDSVYVGSLTPG-ASIGVHS----WGV------TADGRLTSPSWDGRGDLWV-V---DRD 428 (599)
T ss_pred CccceEEcCCCceEEEEcCCCcEEEEeccCCC-Ccccccc----cee------eccCcccCCcCcCCCCEEE-e---cCC
Confidence 68899999999999999888764332111000 0000000 000 0012346788988884333 3 211
Q ss_pred cCCCCEEEEEECCCCceeeeec-CCCC-ceeEEEEccCCCeEEEEecCCCCCCCCeE--EEEeCC--Cc-eEEEE-Eecc
Q 000731 198 SKLHKRLKVWERDSGTLQASSE-LKAF-MGAVLEWMPSGANIAAVYDRKSENKCPSI--VFYERN--GL-ERSSF-DINE 269 (1325)
Q Consensus 198 ~~~d~~irVWd~~~G~l~~t~e-~~~~-~v~~lawsPdG~~IAs~~~d~~~~~~~~V--~~~e~n--Gl-~~~~f-~l~~ 269 (1325)
..+.+.+++... +|+....-. ...+ .|..+.-||||..+|....... +..| -.-+++ |. ...++ .+ .
T Consensus 429 ~~~~~vl~v~~~-~G~~~~V~~~~l~g~~I~~lrvSrDG~RvAvv~~~~g---~~~v~va~V~R~~~G~~~l~~~~~l-~ 503 (599)
T PRK13613 429 PADPRLLWLLQG-DGEPVEVRTPELDGHRVVAVRVARDGVRVALIVEKDG---RRSLQIGRIVRDAKAVVSVEEFRSL-A 503 (599)
T ss_pred CCCceEEEEEcC-CCcEEEeeccccCCCEeEEEEECCCccEEEEEEecCC---CcEEEEEEEEeCCCCcEEeeccEEe-c
Confidence 122345888876 777643211 2334 7899999999999998765321 2233 334443 32 11111 11 1
Q ss_pred CCCCcEEEEEEccCCCeeEEEE
Q 000731 270 QIDSTVELLKWNCMSDLLAAVV 291 (1325)
Q Consensus 270 ~~~~~V~~laWSpDg~~LAs~~ 291 (1325)
+.-..+.+++|..++++++.+.
T Consensus 504 ~~l~~v~~~~W~~~~sL~Vlg~ 525 (599)
T PRK13613 504 PELEDVTDMSWAGDSQLVVLGR 525 (599)
T ss_pred cCCCccceeEEcCCCEEEEEec
Confidence 2223489999999999877564
No 452
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=91.30 E-value=1.7 Score=54.25 Aligned_cols=30 Identities=13% Similarity=0.000 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHhccccHHHHHHHHHHcC
Q 000731 988 KMEQVLEAWADHLSDVKCFEDAATTYFCCS 1017 (1325)
Q Consensus 988 ~~~~i~~~~a~~L~~~~~~~eAa~~y~~ag 1017 (1325)
..++-+.+.|.-+.=+++|+.|.+.|++|-
T Consensus 419 ~sPesWca~GNcfSLQkdh~~Aik~f~RAi 448 (638)
T KOG1126|consen 419 NSPESWCALGNCFSLQKDHDTAIKCFKRAI 448 (638)
T ss_pred CCcHHHHHhcchhhhhhHHHHHHHHHHHhh
Confidence 466788899999999999999999999884
No 453
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=91.27 E-value=1.2 Score=52.71 Aligned_cols=128 Identities=14% Similarity=0.136 Sum_probs=88.9
Q ss_pred HhcCCcccchHhHHHHhcC-----CchhccccHHHhhcCHHHHHHHHHHcCC---C---cHHHHHHHHHHHhcChHHHHh
Q 000731 913 NSQRDPKEFLPYLQELESM-----PPLLMRYTIDLRLQRFENALKHIVSMGD---S---YHADCLNLMKKYAQLFPLGLK 981 (1325)
Q Consensus 913 ~sqkDPkeYLpfL~~L~~l-----~~~~~~~~Id~~L~rye~Al~~l~~~g~---~---~~d~ale~~~~~~~ly~~AL~ 981 (1325)
+++.+--|-|-|.=+|+.+ +-.+|-+.|...|..-..|+++|..+.. . -..+.-+++... +.=.+|.+
T Consensus 535 e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqe-gdksqafq 613 (840)
T KOG2003|consen 535 EALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQE-GDKSQAFQ 613 (840)
T ss_pred HHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcc-cchhhhhh
Confidence 3445555556666666653 4578888999999999999999998751 1 123344566555 66667777
Q ss_pred hcC-----CcHHHHHHHHHHHHHHhccccHHHHHHHHHHcCCH-------H-HHHHHHHHcCCHHHHHHHHhhc
Q 000731 982 LIT-----DPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSSL-------E-KAMKAYRASGNWSGVLTVAGLL 1042 (1325)
Q Consensus 982 L~~-----d~~~~~~i~~~~a~~L~~~~~~~eAa~~y~~ag~~-------e-kAl~~y~~ag~W~~al~la~~l 1042 (1325)
.++ -|-.. +..+-+|.|+.+.+=|+.|..+|++|.-. + ....||++.|+|++|+.+-+..
T Consensus 614 ~~ydsyryfp~ni-e~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~ 686 (840)
T KOG2003|consen 614 CHYDSYRYFPCNI-ETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDI 686 (840)
T ss_pred hhhhcccccCcch-HHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 653 33322 35566788999999999999999998533 2 2347999999999999876643
No 454
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=91.25 E-value=31 Score=39.25 Aligned_cols=138 Identities=16% Similarity=0.089 Sum_probs=76.4
Q ss_pred CCCeEEEEeCCccEEEEeecCceeeeeeccccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEE
Q 000731 127 DGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKV 206 (1325)
Q Consensus 127 DG~~LA~~s~dgtV~l~s~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~irV 206 (1325)
.|+.|++|+.+| |.++... ++.....+. +...|.++.--++=+.|...+ ++.+.+
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~-~~~~~~~i~---------------~~~~I~ql~vl~~~~~llvLs--------d~~l~~ 60 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLS-DPSKPTRIL---------------KLSSITQLSVLPELNLLLVLS--------DGQLYV 60 (275)
T ss_pred CCCEEEEEECCC-EEEEEec-CCccceeEe---------------ecceEEEEEEecccCEEEEEc--------CCccEE
Confidence 578999999998 6554330 111101100 012367888888776666343 378999
Q ss_pred EECCCCceeeeec------------CCCCceeEEEEc----cC-CCeEEEEecCCCCCCCCeEEEEeCCC------ceEE
Q 000731 207 WERDSGTLQASSE------------LKAFMGAVLEWM----PS-GANIAAVYDRKSENKCPSIVFYERNG------LERS 263 (1325)
Q Consensus 207 Wd~~~G~l~~t~e------------~~~~~v~~laws----Pd-G~~IAs~~~d~~~~~~~~V~~~e~nG------l~~~ 263 (1325)
++..+-....... .....-....|+ +. +..|+.+.. ..|.+|+.++ ....
T Consensus 61 ~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~k-------k~i~i~~~~~~~~~f~~~~k 133 (275)
T PF00780_consen 61 YDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVK-------KKILIYEWNDPRNSFSKLLK 133 (275)
T ss_pred EEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEEC-------CEEEEEEEECCcccccceeE
Confidence 9874333222110 111111222333 33 345555543 3688877543 2334
Q ss_pred EEEeccCCCCcEEEEEEccCCCeeEEEEccCCCCeEEEEEeeC
Q 000731 264 SFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSN 306 (1325)
Q Consensus 264 ~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~n 306 (1325)
+|.++ ..+.+++|. ++.|+++..++ ..+.|..+
T Consensus 134 e~~lp----~~~~~i~~~--~~~i~v~~~~~----f~~idl~~ 166 (275)
T PF00780_consen 134 EISLP----DPPSSIAFL--GNKICVGTSKG----FYLIDLNT 166 (275)
T ss_pred EEEcC----CCcEEEEEe--CCEEEEEeCCc----eEEEecCC
Confidence 55553 458899999 67788888776 77777764
No 455
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=91.07 E-value=4.2 Score=52.42 Aligned_cols=150 Identities=12% Similarity=0.206 Sum_probs=89.9
Q ss_pred ccHHHhhcCHHHHHHHHHHcCCCcHHHHHHHHHHH--hcChHHHHh----hc-C---CcH--HHHHHHHHHHHHHhcccc
Q 000731 938 YTIDLRLQRFENALKHIVSMGDSYHADCLNLMKKY--AQLFPLGLK----LI-T---DPA--KMEQVLEAWADHLSDVKC 1005 (1325)
Q Consensus 938 ~~Id~~L~rye~Al~~l~~~g~~~~d~ale~~~~~--~~ly~~AL~----L~-~---d~~--~~~~i~~~~a~~L~~~~~ 1005 (1325)
|.+-..-|.||.|+++|.+. +...-+|+-+..-. =+|....-. ++ . ++. .+-.+...|...+ ...+
T Consensus 265 f~~LlLtgqFE~AI~~L~~~-~~~~~dAVH~AIaL~~~gLL~~~~~~~~~lls~~~~~~~~ln~arLI~~Y~~~F-~~td 342 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYRN-EFNRVDAVHFAIALAYYGLLRVSDSSSAPLLSVDPGDPPPLNFARLIGQYTRSF-EITD 342 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT---T-HHHHHHHHHHHHHTT------------------------HHHHHHHHHHTT-TTT-
T ss_pred HHHHHHHhhHHHHHHHHHhh-ccCcccHHHHHHHHHHcCCCCCCCccccceeeecCCCCCCcCHHHHHHHHHHHH-hccC
Confidence 47777899999999999983 22345565555322 022222211 22 1 111 3456667777755 4668
Q ss_pred HHHHHHHHHHcCCHH---------HHH-HHHHHcCCHHHHHH------------HHh-----hcCCCHHHHHHHHHHHHH
Q 000731 1006 FEDAATTYFCCSSLE---------KAM-KAYRASGNWSGVLT------------VAG-----LLKLGKDEVAKLAQELCE 1058 (1325)
Q Consensus 1006 ~~eAa~~y~~ag~~e---------kAl-~~y~~ag~W~~al~------------la~-----~l~~~~~~~~~l~~~la~ 1058 (1325)
.++|..+|....... +++ +.-...++|...+- +-+ .+.-.++.+..++...|.
T Consensus 343 ~~~Al~Y~~li~~~~~~~~~~l~~~~l~eLvletref~~LLG~i~~dG~r~~G~i~~~~~Li~~~~~~~~~~~i~~~~A~ 422 (613)
T PF04097_consen 343 PREALQYLYLICLFKDPEQRNLFHECLRELVLETREFDLLLGDINPDGSRTPGLIERRLSLIKFDDDEDFLREIIEQAAR 422 (613)
T ss_dssp HHHHHHHHHGGGGS-SCCHHHHHHHHHHHHHHHH--HHHHHEEE-TTS-EEE-HHHHTGGGGT-SSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHccCCHHHHCCCCCCCCccccceeeccccccCCCCcHHHHHHHHHHHHH
Confidence 889999888776542 222 33335566666652 111 022245678899999999
Q ss_pred HHHHcCChHHHHHHHHHhcCCHHHHHHHHHHh
Q 000731 1059 ELQALGKPGEAAKIALDYCGDVTNGISLLIDA 1090 (1325)
Q Consensus 1059 ~L~~~~~~~eAa~i~~~yl~d~e~Av~~~~~~ 1090 (1325)
.+.+.|++.+|..+|.- +++++.+++++++.
T Consensus 423 ~~e~~g~~~dAi~Ly~L-a~~~d~vl~lln~~ 453 (613)
T PF04097_consen 423 EAEERGRFEDAILLYHL-AEEYDKVLSLLNRL 453 (613)
T ss_dssp HHHHCT-HHHHHHHHHH-TT-HHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHH-HhhHHHHHHHHHHH
Confidence 99999999999999988 99999999999875
No 456
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=91.00 E-value=2.9 Score=54.33 Aligned_cols=70 Identities=11% Similarity=0.115 Sum_probs=39.8
Q ss_pred CCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcCCH-----HHHHHH----HHHhcCHHHHHHH
Q 000731 1030 GNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCGDV-----TNGISL----LIDARDWEEALRV 1099 (1325)
Q Consensus 1030 g~W~~al~la~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~yl~d~-----e~Av~~----~~~~~~w~eA~rL 1099 (1325)
|+|.+|..|-.+....-.+..+....+|.-+.++|+|..|.+.|...+.++ .+-+.+ |-+++.|.+|.+-
T Consensus 660 g~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ 738 (1018)
T KOG2002|consen 660 GRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEA 738 (1018)
T ss_pred cCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHH
Confidence 357777666655432211222455567777888888888888887744332 233333 3345566666543
No 457
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=90.94 E-value=5.4 Score=39.40 Aligned_cols=96 Identities=17% Similarity=0.103 Sum_probs=62.7
Q ss_pred EeeecC-CCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEEEeC
Q 000731 26 SALDIE-QNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSV 104 (1325)
Q Consensus 26 ~~~d~~-~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~V~~v~~spdg~~La~as~dG~I~lw~~ 104 (1325)
+.||-| .+.|.++|+|.-|..++-. +. +.. +. ..+.|+++..+.. ..++-|.++|||-+|+.
T Consensus 8 ~d~d~dg~~eLlvGs~D~~IRvf~~~----e~---~~E----i~-----e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~ 70 (111)
T PF14783_consen 8 FDFDGDGENELLVGSDDFEIRVFKGD----EI---VAE----IT-----ETDKVTSLCSLGG-GRFAYALANGTVGVYDR 70 (111)
T ss_pred EecCCCCcceEEEecCCcEEEEEeCC----cE---EEE----Ee-----cccceEEEEEcCC-CEEEEEecCCEEEEEeC
Confidence 344544 3789999999988777651 11 111 11 1468999999988 56888999999999998
Q ss_pred CCCeEEEeceecCcEEEEEEcC-CC--C-eEEEEeCCccE
Q 000731 105 DGNATEVVGRVEGGVRFISPSP-DG--D-LLGVTTGFGQI 140 (1325)
Q Consensus 105 ~~~~~e~vg~~~~~I~~~awSP-DG--~-~LA~~s~dgtV 140 (1325)
....+.+... ..+.++++.. +| . -|++|=.+|.|
T Consensus 71 ~~RlWRiKSK--~~~~~~~~~D~~gdG~~eLI~GwsnGkv 108 (111)
T PF14783_consen 71 SQRLWRIKSK--NQVTSMAFYDINGDGVPELIVGWSNGKV 108 (111)
T ss_pred cceeeeeccC--CCeEEEEEEcCCCCCceEEEEEecCCeE
Confidence 7766665543 3366666543 32 1 45566566665
No 458
>PF12931 Sec16_C: Sec23-binding domain of Sec16; PDB: 3MZK_C.
Probab=90.66 E-value=1.9 Score=50.01 Aligned_cols=94 Identities=20% Similarity=0.360 Sum_probs=59.9
Q ss_pred HHHHcCCHHHHHHHHHHcCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCCh-----HHHHHHHHHhcCCHHHHHHH
Q 000731 1012 TYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKP-----GEAAKIALDYCGDVTNGISL 1086 (1325)
Q Consensus 1012 ~y~~ag~~ekAl~~y~~ag~W~~al~la~~l~~~~~~~~~l~~~la~~L~~~~~~-----~eAa~i~~~yl~d~e~Av~~ 1086 (1325)
-+...|+.++|+++..+.++|-.|+-||..+ +++...+...++.+.-...++. .-=..+|.=|.|+.+.+|+-
T Consensus 4 ~~Ll~G~~~~Av~~al~~~~wa~ALlLAs~~--g~e~~~~v~~~y~~~~~~~~~~~~~~~~~L~~l~~v~~g~~~~~v~~ 81 (284)
T PF12931_consen 4 QLLLVGNREEAVELALDNGLWAHALLLASSL--GPELWKKVVQEYFRREFSAGSPSSKITHLLRTLYQVFSGNSPEAVDE 81 (284)
T ss_dssp HHHHTT-HHHHHHHHHHTT-HHHHHHHHHTS---HHHHHHHHHHHHH--------THHHHHHHHHHHHHTTT-HHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHCCChHHHHHHHHhc--CHHHHHHHHHHHHHHhccCCCCcchhhHHHHHHHHHHcCCcHHHHHH
Confidence 4677899999999999999999999999886 4555555555554444222332 11234555568999999988
Q ss_pred HHHh------------cCHHHHHHHHHhcCCch
Q 000731 1087 LIDA------------RDWEEALRVAFMHRRED 1107 (1325)
Q Consensus 1087 ~~~~------------~~w~eA~rLa~~~~~~d 1107 (1325)
++.. .+|.|.+.++-.+..++
T Consensus 82 l~~~~~~~~~~~~~~~~~Wre~lA~il~N~~~~ 114 (284)
T PF12931_consen 82 LVPNSAAPPLEGEWDLDNWRETLAIILSNRTPE 114 (284)
T ss_dssp HHH-----HHHHHHHHHSHHHHHHHHHHTS---
T ss_pred hccccccccccccchhcCHHHHHHHHHhCCCcc
Confidence 8765 48999998887765443
No 459
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=90.62 E-value=36 Score=38.90 Aligned_cols=184 Identities=11% Similarity=0.084 Sum_probs=102.8
Q ss_pred eeEEeeecCCCEEEEEeC---CCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcE
Q 000731 23 LQFSALDIEQNRLFFASS---ANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLL 99 (1325)
Q Consensus 23 ~~~~~~d~~~~~l~~~s~---~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~V~~v~~spdg~~La~as~dG~I 99 (1325)
-+++.|+. ++.||-.+. .+.|..+|+ .+++.. ....||..+.+. .|+ .. +++..-....+|..
T Consensus 47 TQGL~~~~-~g~LyESTG~yG~S~l~~~d~--~tg~~~-~~~~l~~~~FgE------Git---~~-~d~l~qLTWk~~~~ 112 (264)
T PF05096_consen 47 TQGLEFLD-DGTLYESTGLYGQSSLRKVDL--ETGKVL-QSVPLPPRYFGE------GIT---IL-GDKLYQLTWKEGTG 112 (264)
T ss_dssp EEEEEEEE-TTEEEEEECSTTEEEEEEEET--TTSSEE-EEEE-TTT--EE------EEE---EE-TTEEEEEESSSSEE
T ss_pred CccEEecC-CCEEEEeCCCCCcEEEEEEEC--CCCcEE-EEEECCccccce------eEE---EE-CCEEEEEEecCCeE
Confidence 45566653 455666544 346899999 676642 223344433222 222 22 34566677889999
Q ss_pred EEEeCCCCeE-EEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEe-ecCceeeeeeccccCCCceeccCccccCCCCeE
Q 000731 100 LLHSVDGNAT-EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMT-HDWDLLYENPLEELAEGFDVHEPELSSSFSFKS 177 (1325)
Q Consensus 100 ~lw~~~~~~~-e~vg~~~~~I~~~awSPDG~~LA~~s~dgtV~l~s-~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~ 177 (1325)
.+||.++-+. ..+. .++.=+.++ .||+.|....+..++..++ .+|.....+.... .+++| ..+.
T Consensus 113 f~yd~~tl~~~~~~~-y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~--~g~pv---------~~LN 178 (264)
T PF05096_consen 113 FVYDPNTLKKIGTFP-YPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTD--NGRPV---------SNLN 178 (264)
T ss_dssp EEEETTTTEEEEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EE--TTEE------------EE
T ss_pred EEEccccceEEEEEe-cCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEE--CCEEC---------CCcE
Confidence 9999987432 2222 122224444 6889998888888898887 4677666655543 33444 2345
Q ss_pred EEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeec---------------CCCCceeEEEEccCCCeEEEEec
Q 000731 178 PISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSE---------------LKAFMGAVLEWMPSGANIAAVYD 242 (1325)
Q Consensus 178 ~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e---------------~~~~~v~~lawsPdG~~IAs~~~ 242 (1325)
-+-|- ||...| =-.. . ..|-+-|+++|+...... +...--+.|||.|.++.+-.++.
T Consensus 179 ELE~i-~G~IyA-NVW~-----t-d~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 179 ELEYI-NGKIYA-NVWQ-----T-DRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp EEEEE-TTEEEE-EETT-----S-SEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred eEEEE-cCEEEE-EeCC-----C-CeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence 56665 788777 3232 1 345555888888766421 01234589999999887766654
No 460
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.61 E-value=14 Score=41.95 Aligned_cols=94 Identities=19% Similarity=0.128 Sum_probs=59.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHcCC-------------------HHHHHHHHhhcCCCHHH-HHHHHHHHHHHHHHcCC
Q 000731 1006 FEDAATTYFCCSSLEKAMKAYRASGN-------------------WSGVLTVAGLLKLGKDE-VAKLAQELCEELQALGK 1065 (1325)
Q Consensus 1006 ~~eAa~~y~~ag~~ekAl~~y~~ag~-------------------W~~al~la~~l~~~~~~-~~~l~~~la~~L~~~~~ 1065 (1325)
..-|+++|...|+++.|+++....+. .++.+..+.++ +.+. +..||...........+
T Consensus 111 ~l~aa~i~~~~~~~deAl~~~~~~~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i--ded~tLtQLA~awv~la~ggek 188 (299)
T KOG3081|consen 111 LLLAAIIYMHDGDFDEALKALHLGENLEAAALNVQILLKMHRFDLAEKELKKMQQI--DEDATLTQLAQAWVKLATGGEK 188 (299)
T ss_pred HHHhhHHhhcCCChHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--chHHHHHHHHHHHHHHhccchh
Confidence 34688888888888888877665332 22233333333 3332 23456666666666788
Q ss_pred hHHHHHHHHHhcCCH-------HHHHHHHHHhcCHHHHHHHHH
Q 000731 1066 PGEAAKIALDYCGDV-------TNGISLLIDARDWEEALRVAF 1101 (1325)
Q Consensus 1066 ~~eAa~i~~~yl~d~-------e~Av~~~~~~~~w~eA~rLa~ 1101 (1325)
+.+|--+|.++.+.+ ..-.-+++..++|+||-.+..
T Consensus 189 ~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~ 231 (299)
T KOG3081|consen 189 IQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLE 231 (299)
T ss_pred hhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHH
Confidence 999999999966522 122335567788999976553
No 461
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=90.48 E-value=15 Score=44.79 Aligned_cols=27 Identities=26% Similarity=0.220 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHhc
Q 000731 1051 KLAQELCEELQALGKPGEAAKIALDYC 1077 (1325)
Q Consensus 1051 ~l~~~la~~L~~~~~~~eAa~i~~~yl 1077 (1325)
.+...+|..|...|++++|..++.+.+
T Consensus 264 ~l~~~~a~~l~~~g~~~~A~~~l~~~l 290 (409)
T TIGR00540 264 ALKIALAEHLIDCDDHDSAQEIIFDGL 290 (409)
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 455556666666677777666666644
No 462
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=90.48 E-value=1.5 Score=45.24 Aligned_cols=82 Identities=11% Similarity=0.043 Sum_probs=51.9
Q ss_pred hhccccHHHhhcCHHHHHHHHHHcCCCcHHHH---------HHHHHHHhcChHHHHhhc---CCcHHHHHHHHHHHHHHh
Q 000731 934 LLMRYTIDLRLQRFENALKHIVSMGDSYHADC---------LNLMKKYAQLFPLGLKLI---TDPAKMEQVLEAWADHLS 1001 (1325)
Q Consensus 934 ~~~~~~Id~~L~rye~Al~~l~~~g~~~~d~a---------le~~~~~~~ly~~AL~L~---~d~~~~~~i~~~~a~~L~ 1001 (1325)
.+..+.+....|+|++|...|.+.-....+.. -...... +.|++|+.++ .++.....+....|+-+.
T Consensus 51 ~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~-~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~ 129 (145)
T PF09976_consen 51 ALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQ-GQYDEALATLQQIPDEAFKALAAELLGDIYL 129 (145)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHhccCcchHHHHHHHHHHHHH
Confidence 44556777778999999999887642211111 1222566 8899999888 344445556666666666
Q ss_pred ccccHHHHHHHHHHc
Q 000731 1002 DVKCFEDAATTYFCC 1016 (1325)
Q Consensus 1002 ~~~~~~eAa~~y~~a 1016 (1325)
..|++++|...|.+|
T Consensus 130 ~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 130 AQGDYDEARAAYQKA 144 (145)
T ss_pred HCCCHHHHHHHHHHh
Confidence 666666666666543
No 463
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=90.43 E-value=4.3 Score=41.83 Aligned_cols=84 Identities=13% Similarity=0.041 Sum_probs=48.8
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHcCCHH-----------HHHHHHHHcCCHHHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 000731 991 QVLEAWADHLSDVKCFEDAATTYFCCSSLE-----------KAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEE 1059 (1325)
Q Consensus 991 ~i~~~~a~~L~~~~~~~eAa~~y~~ag~~e-----------kAl~~y~~ag~W~~al~la~~l~~~~~~~~~l~~~la~~ 1059 (1325)
......|..+.+.++|++|...|..+-+.. ....++...|++++|+....... ++.-........++.
T Consensus 49 ~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~-~~~~~~~~~~~~Gdi 127 (145)
T PF09976_consen 49 LAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIP-DEAFKALAAELLGDI 127 (145)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhcc-CcchHHHHHHHHHHH
Confidence 334457788888888888888887664321 12356666777777777665532 111112233445555
Q ss_pred HHHcCChHHHHHHHHH
Q 000731 1060 LQALGKPGEAAKIALD 1075 (1325)
Q Consensus 1060 L~~~~~~~eAa~i~~~ 1075 (1325)
+...|++.+|...|.+
T Consensus 128 ~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 128 YLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHCCCHHHHHHHHHH
Confidence 6666666666665543
No 464
>PRK14574 hmsH outer membrane protein; Provisional
Probab=90.32 E-value=7.9 Score=51.45 Aligned_cols=169 Identities=15% Similarity=0.030 Sum_probs=114.4
Q ss_pred chhccccHHHhhcCHHHHHHHHHHcCCCcHH------HHHHHHHHHhcChHHHHhhc---CCc-HHHHHHHHHHHHHHhc
Q 000731 933 PLLMRYTIDLRLQRFENALKHIVSMGDSYHA------DCLNLMKKYAQLFPLGLKLI---TDP-AKMEQVLEAWADHLSD 1002 (1325)
Q Consensus 933 ~~~~~~~Id~~L~rye~Al~~l~~~g~~~~d------~ale~~~~~~~ly~~AL~L~---~d~-~~~~~i~~~~a~~L~~ 1002 (1325)
..+-++-|....|+|+.|+..|.++-..... .-+.+.-.. +.+++|+..+ .+| ...-......|..+..
T Consensus 36 ~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~-G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~ 114 (822)
T PRK14574 36 TQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWA-GRDQEVIDVYERYQSSMNISSRGLASAARAYRN 114 (822)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHc-CCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHH
Confidence 4566777888889999999999887421112 224566677 8899999988 232 1223344456789999
Q ss_pred cccHHHHHHHHHHcC-----C---HHHHHHHHHHcCCHHHHHHHHhhcC-CCHHHHHHHHHHHHHHHHHcCChHHHHHHH
Q 000731 1003 VKCFEDAATTYFCCS-----S---LEKAMKAYRASGNWSGVLTVAGLLK-LGKDEVAKLAQELCEELQALGKPGEAAKIA 1073 (1325)
Q Consensus 1003 ~~~~~eAa~~y~~ag-----~---~ekAl~~y~~ag~W~~al~la~~l~-~~~~~~~~l~~~la~~L~~~~~~~eAa~i~ 1073 (1325)
.++|.+|..+|.++- + +-..+..|...++.++|+..+.++. .+++ . ..+.-++..+...+++.+|.+.|
T Consensus 115 ~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~-~-~~~l~layL~~~~~~~~~AL~~~ 192 (822)
T PRK14574 115 EKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPT-V-QNYMTLSYLNRATDRNYDALQAS 192 (822)
T ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcc-h-HHHHHHHHHHHhcchHHHHHHHH
Confidence 999999999999983 2 1222466778899999999888753 2222 2 22344455555678887798888
Q ss_pred HHhc----CCHHH---HHHHHHHhcCHHHHHHHHHhcC
Q 000731 1074 LDYC----GDVTN---GISLLIDARDWEEALRVAFMHR 1104 (1325)
Q Consensus 1074 ~~yl----~d~e~---Av~~~~~~~~w~eA~rLa~~~~ 1104 (1325)
.+.+ ++.+- =+..+.+.+.-.-|.+++.+|+
T Consensus 193 ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p 230 (822)
T PRK14574 193 SEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENP 230 (822)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCc
Confidence 8854 22322 2344557788889999999886
No 465
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=90.31 E-value=0.86 Score=52.44 Aligned_cols=114 Identities=17% Similarity=0.183 Sum_probs=71.4
Q ss_pred CCEEEEEeCCCcEEEEeccc-ccccccceeeccccccccccCCCCCCEEEEEEcc-CCCEEEEEECCCcEEEEeCCCCeE
Q 000731 32 QNRLFFASSANNIYSAQLSS-FQNERASIKTAISAEIEHIDLEPGDSITAFDYLM-EKEALIVGTSSGLLLLHSVDGNAT 109 (1325)
Q Consensus 32 ~~~l~~~s~~~~i~~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~~~~V~~v~~sp-dg~~La~as~dG~I~lw~~~~~~~ 109 (1325)
++.|+.++-++.|+.+|+-. .+++. |...- +-.+..|++++.+. +++.|.+.+-+|+|+|||..-.++
T Consensus 264 ~nLv~~GcRngeI~~iDLR~rnqG~~-~~a~r---------lyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~ 333 (425)
T KOG2695|consen 264 DNLVFNGCRNGEIFVIDLRCRNQGNG-WCAQR---------LYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKC 333 (425)
T ss_pred CCeeEecccCCcEEEEEeeecccCCC-cceEE---------EEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhc
Confidence 56777778888899999931 11122 33221 22246899999988 888888888999999999864222
Q ss_pred E-EeceecCcEEEEE-----EcCCCCeEEEEeCCccEEEEe-ecCceeeeeec
Q 000731 110 E-VVGRVEGGVRFIS-----PSPDGDLLGVTTGFGQILVMT-HDWDLLYENPL 155 (1325)
Q Consensus 110 e-~vg~~~~~I~~~a-----wSPDG~~LA~~s~dgtV~l~s-~~~d~~~e~~l 155 (1325)
. -|-..++.|+..+ ..|....+++++.|--.++|+ +++..+.+.+.
T Consensus 334 ~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf 386 (425)
T KOG2695|consen 334 KKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPF 386 (425)
T ss_pred ccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCC
Confidence 1 1111222233333 355666778888887778886 44555555543
No 466
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=90.17 E-value=3.5 Score=48.82 Aligned_cols=106 Identities=15% Similarity=0.053 Sum_probs=75.3
Q ss_pred ccccHHHhhcCHHHHHHHHHHcCCCc------HHHHHHHHHHHhcChHHHHhhc-----CCcHHHHHHHHHHHHHHhccc
Q 000731 936 MRYTIDLRLQRFENALKHIVSMGDSY------HADCLNLMKKYAQLFPLGLKLI-----TDPAKMEQVLEAWADHLSDVK 1004 (1325)
Q Consensus 936 ~~~~Id~~L~rye~Al~~l~~~g~~~------~d~ale~~~~~~~ly~~AL~L~-----~d~~~~~~i~~~~a~~L~~~~ 1004 (1325)
..+.++.+-|+|.+|++++.+.-+.. +-.|.++.... +.++.|=.+. ..+.....+....++-+..++
T Consensus 89 ~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qr-gd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~ 167 (400)
T COG3071 89 NEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQR-GDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRR 167 (400)
T ss_pred HHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhc-ccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCC
Confidence 34567778899999999999864221 23445555666 7888887765 111233445556789999999
Q ss_pred cHHHHHHHHHHcCC--------HHHHHHHHHHcCCHHHHHHHHhhc
Q 000731 1005 CFEDAATTYFCCSS--------LEKAMKAYRASGNWSGVLTVAGLL 1042 (1325)
Q Consensus 1005 ~~~eAa~~y~~ag~--------~ekAl~~y~~ag~W~~al~la~~l 1042 (1325)
+|..|..--.++-. ..-|+++|.+.|+|+.++.+...+
T Consensus 168 d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L 213 (400)
T COG3071 168 DYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKL 213 (400)
T ss_pred CchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 99998876665532 245789999999999999887655
No 467
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=90.00 E-value=1 Score=54.35 Aligned_cols=101 Identities=17% Similarity=0.221 Sum_probs=69.5
Q ss_pred hHhHHHHhcCCchhccccHHHhhcCHHHHHHHHHHcCCCcHHHHHHHHHHHhcChHHHHhhcCCcHHHHHHHHHHHHHHh
Q 000731 922 LPYLQELESMPPLLMRYTIDLRLQRFENALKHIVSMGDSYHADCLNLMKKYAQLFPLGLKLITDPAKMEQVLEAWADHLS 1001 (1325)
Q Consensus 922 LpfL~~L~~l~~~~~~~~Id~~L~rye~Al~~l~~~g~~~~d~ale~~~~~~~ly~~AL~L~~d~~~~~~i~~~~a~~L~ 1001 (1325)
+.++++|.+-++. +... -.+.+..+++ ..+|+.++.+. |+.. |.. -.++..+|++|.
T Consensus 189 i~lle~L~~~~pe-----v~~~------LA~v~l~~~~--E~~AI~ll~~a-------L~~~--p~d-~~LL~~Qa~fLl 245 (395)
T PF09295_consen 189 IELLEKLRERDPE-----VAVL------LARVYLLMNE--EVEAIRLLNEA-------LKEN--PQD-SELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHhcCCc-----HHHH------HHHHHHhcCc--HHHHHHHHHHH-------HHhC--CCC-HHHHHHHHHHHH
Confidence 7777777776432 2211 1333334443 46666555444 3333 211 678889999999
Q ss_pred ccccHHHHHHHHHHc--------CCHHHHHHHHHHcCCHHHHHHHHhhcCCC
Q 000731 1002 DVKCFEDAATTYFCC--------SSLEKAMKAYRASGNWSGVLTVAGLLKLG 1045 (1325)
Q Consensus 1002 ~~~~~~eAa~~y~~a--------g~~ekAl~~y~~ag~W~~al~la~~l~~~ 1045 (1325)
.+++|+.|..+..+| .-+....++|+..|+|++|+......++.
T Consensus 246 ~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCPML 297 (395)
T ss_pred hcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence 999999999999888 34578889999999999999877776654
No 468
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.90 E-value=2.8 Score=46.64 Aligned_cols=26 Identities=31% Similarity=0.147 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHH
Q 000731 1050 AKLAQELCEELQALGKPGEAAKIALD 1075 (1325)
Q Consensus 1050 ~~l~~~la~~L~~~~~~~eAa~i~~~ 1075 (1325)
-+++..++..|...++|.||+..+++
T Consensus 150 ~el~gk~sr~lVrl~kf~Eaa~a~lK 175 (308)
T KOG1585|consen 150 FELYGKCSRVLVRLEKFTEAATAFLK 175 (308)
T ss_pred HHHHHHhhhHhhhhHHhhHHHHHHHH
Confidence 46778888888888999999988877
No 469
>PRK13684 Ycf48-like protein; Provisional
Probab=89.88 E-value=26 Score=41.69 Aligned_cols=142 Identities=13% Similarity=0.088 Sum_probs=81.6
Q ss_pred CCCEEEEEEccCCCEEEEEECCCcEEEE-eCCCCeEEEe-ceecCcEEEEEEcCCCCeEEEEeCCccEEEEee----cCc
Q 000731 75 GDSITAFDYLMEKEALIVGTSSGLLLLH-SVDGNATEVV-GRVEGGVRFISPSPDGDLLGVTTGFGQILVMTH----DWD 148 (1325)
Q Consensus 75 ~~~V~~v~~spdg~~La~as~dG~I~lw-~~~~~~~e~v-g~~~~~I~~~awSPDG~~LA~~s~dgtV~l~s~----~~d 148 (1325)
.+.+.++.+.|++..++ ++..|.+..- +..+.....+ ..-...++++++.|+|+.++. +..|.+++-+. .|.
T Consensus 172 ~g~~~~i~~~~~g~~v~-~g~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~v-g~~G~~~~~s~d~G~sW~ 249 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVA-VSSRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWML-ARGGQIRFNDPDDLESWS 249 (334)
T ss_pred cceEEEEEECCCCeEEE-EeCCceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEE-ecCCEEEEccCCCCCccc
Confidence 35789999999986654 4567766532 2222334422 222467999999999987665 45577654322 233
Q ss_pred eeeeeeccccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeee---cCCCCce
Q 000731 149 LLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASS---ELKAFMG 225 (1325)
Q Consensus 149 ~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~---e~~~~~v 225 (1325)
.+. .... ...-.+..+.++|+|..++ ++. ++.+. ...+.|+.-... .......
T Consensus 250 ~~~---~~~~------------~~~~~l~~v~~~~~~~~~~-~G~-------~G~v~-~S~d~G~tW~~~~~~~~~~~~~ 305 (334)
T PRK13684 250 KPI---IPEI------------TNGYGYLDLAYRTPGEIWA-GGG-------NGTLL-VSKDGGKTWEKDPVGEEVPSNF 305 (334)
T ss_pred ccc---CCcc------------ccccceeeEEEcCCCCEEE-EcC-------CCeEE-EeCCCCCCCeECCcCCCCCcce
Confidence 211 0000 0012457899999999887 542 34443 455445443322 2222335
Q ss_pred eEEEEccCCCeEEEEec
Q 000731 226 AVLEWMPSGANIAAVYD 242 (1325)
Q Consensus 226 ~~lawsPdG~~IAs~~~ 242 (1325)
..+.|..+++.+|++..
T Consensus 306 ~~~~~~~~~~~~~~G~~ 322 (334)
T PRK13684 306 YKIVFLDPEKGFVLGQR 322 (334)
T ss_pred EEEEEeCCCceEEECCC
Confidence 67788888888887754
No 470
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=89.70 E-value=28 Score=41.09 Aligned_cols=45 Identities=13% Similarity=0.046 Sum_probs=25.6
Q ss_pred HHHhccccHHHHHHHHHHcCCHHHHHHHHHHcCCHHHHHHHHhhcC
Q 000731 998 DHLSDVKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLK 1043 (1325)
Q Consensus 998 ~~L~~~~~~~eAa~~y~~ag~~ekAl~~y~~ag~W~~al~la~~l~ 1043 (1325)
+.+...++..+|..+-.++.. ++-+++|.++|+|++|...|.+.+
T Consensus 245 ~~~~~~~~~~eA~~yI~k~~~-~~rv~~y~~~~~~~~A~~~A~~~k 289 (319)
T PF04840_consen 245 EACLKYGNKKEASKYIPKIPD-EERVEMYLKCGDYKEAAQEAFKEK 289 (319)
T ss_pred HHHHHCCCHHHHHHHHHhCCh-HHHHHHHHHCCCHHHHHHHHHHcC
Confidence 445555555555555555444 556666666666666666665543
No 471
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=89.68 E-value=6.7 Score=40.01 Aligned_cols=43 Identities=16% Similarity=0.187 Sum_probs=25.1
Q ss_pred HHhccccHHHHHHHHHHcCCHHHHHHHHHHc-CCHHHHHHHHhh
Q 000731 999 HLSDVKCFEDAATTYFCCSSLEKAMKAYRAS-GNWSGVLTVAGL 1041 (1325)
Q Consensus 999 ~L~~~~~~~eAa~~y~~ag~~ekAl~~y~~a-g~W~~al~la~~ 1041 (1325)
.+...+-|++|..+|.+.|++++|++.+... ++.+.|+..+.+
T Consensus 78 ~c~~~~l~~~~~~l~~k~~~~~~Al~~~l~~~~d~~~a~~~~~~ 121 (140)
T smart00299 78 LCEKAKLYEEAVELYKKDGNFKDAIVTLIEHLGNYEKAIEYFVK 121 (140)
T ss_pred HHHHcCcHHHHHHHHHhhcCHHHHHHHHHHcccCHHHHHHHHHh
Confidence 3344455566666666666666666666655 556666655554
No 472
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=89.63 E-value=17 Score=42.86 Aligned_cols=248 Identities=8% Similarity=0.036 Sum_probs=115.6
Q ss_pred EEeeecCCCEEEEEeC-----C-----CcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEE
Q 000731 25 FSALDIEQNRLFFASS-----A-----NNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGT 94 (1325)
Q Consensus 25 ~~~~d~~~~~l~~~s~-----~-----~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~V~~v~~spdg~~La~as 94 (1325)
.+++.+++..+|+++. . -.|-.||. .+-.....|. ||..-+ ++.......++.|+||+.+.+.-
T Consensus 40 ~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~--~TL~~~~EI~-iP~k~R---~~~~~~~~~~~ls~dgk~~~V~N 113 (342)
T PF06433_consen 40 NVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDT--QTLSPTGEIE-IPPKPR---AQVVPYKNMFALSADGKFLYVQN 113 (342)
T ss_dssp EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEET--TTTEEEEEEE-ETTS-B-----BS--GGGEEE-TTSSEEEEEE
T ss_pred ceeECCCCCEEEEEEEEEeccccccceeEEEEEec--CcCcccceEe-cCCcch---heecccccceEEccCCcEEEEEc
Confidence 3678899999999854 1 13677887 3333222222 232200 11112345578899999887653
Q ss_pred --CCCcEEEEeCCCCeEE-EeceecCcEEEEEEcCCCCeEEEEeCCccEEEEee--cCceeeeeeccccCCCceeccCcc
Q 000731 95 --SSGLLLLHSVDGNATE-VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTH--DWDLLYENPLEELAEGFDVHEPEL 169 (1325)
Q Consensus 95 --~dG~I~lw~~~~~~~e-~vg~~~~~I~~~awSPDG~~LA~~s~dgtV~l~s~--~~d~~~e~~l~~~~~~~~Vs~tqf 169 (1325)
=.-.|-+.|+..+++- .+. ..+....--+-|+ .+.+.++||++...+- ++++.. .. ...|
T Consensus 114 ~TPa~SVtVVDl~~~kvv~ei~-~PGC~~iyP~~~~--~F~~lC~DGsl~~v~Ld~~Gk~~~-~~-----------t~~F 178 (342)
T PF06433_consen 114 FTPATSVTVVDLAAKKVVGEID-TPGCWLIYPSGNR--GFSMLCGDGSLLTVTLDADGKEAQ-KS-----------TKVF 178 (342)
T ss_dssp ESSSEEEEEEETTTTEEEEEEE-GTSEEEEEEEETT--EEEEEETTSCEEEEEETSTSSEEE-EE-----------EEES
T ss_pred cCCCCeEEEEECCCCceeeeec-CCCEEEEEecCCC--ceEEEecCCceEEEEECCCCCEeE-ee-----------cccc
Confidence 2334788888887652 222 2344444444444 4778889998865432 233221 00 0122
Q ss_pred ccCCC-CeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeeecC---------CCCc----eeEEEEccCCC
Q 000731 170 SSSFS-FKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSEL---------KAFM----GAVLEWMPSGA 235 (1325)
Q Consensus 170 ~~~~~-~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~---------~~~~----v~~lawsPdG~ 235 (1325)
...++ -...-.|+.++..+..++. .+.|+--|. +|.......+ ..+| -.-+|+++..+
T Consensus 179 ~~~~dp~f~~~~~~~~~~~~~F~Sy-------~G~v~~~dl-sg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~ 250 (342)
T PF06433_consen 179 DPDDDPLFEHPAYSRDGGRLYFVSY-------EGNVYSADL-SGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASG 250 (342)
T ss_dssp STTTS-B-S--EEETTTTEEEEEBT-------TSEEEEEEE-TTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTT
T ss_pred CCCCcccccccceECCCCeEEEEec-------CCEEEEEec-cCCcccccCcccccCccccccCcCCcceeeeeeccccC
Confidence 22222 2234456555433332433 245555454 3332111110 0111 13455554444
Q ss_pred eEEEEecC----CCCCCCCeEEEEeC-CCceEEEEEeccCCCCcEEEEEEccCCCeeEEE-E-ccCCCCeEEEEEeeCCe
Q 000731 236 NIAAVYDR----KSENKCPSIVFYER-NGLERSSFDINEQIDSTVELLKWNCMSDLLAAV-V-RFEEYDSVKICFFSNNH 308 (1325)
Q Consensus 236 ~IAs~~~d----~~~~~~~~V~~~e~-nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~-~-~d~~~~~VqLW~~~n~~ 308 (1325)
+|...-.. .++.....|..+|. ++.+...+.+. ..+.+|+-|-|.+=+..+ + .++ .+.+||..+..
T Consensus 251 rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~----~~~~Si~Vsqd~~P~L~~~~~~~~---~l~v~D~~tGk 323 (342)
T PF06433_consen 251 RLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLE----HPIDSIAVSQDDKPLLYALSAGDG---TLDVYDAATGK 323 (342)
T ss_dssp EEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEE----EEESEEEEESSSS-EEEEEETTTT---EEEEEETTT--
T ss_pred eEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCC----CccceEEEccCCCcEEEEEcCCCC---eEEEEeCcCCc
Confidence 44332111 01222334656663 45554433332 347789999988833333 2 344 79999988764
No 473
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=89.54 E-value=2.2 Score=50.64 Aligned_cols=151 Identities=21% Similarity=0.198 Sum_probs=73.8
Q ss_pred hhccccHHHhhcCHHHHHHHHHHc---C------------CCcHHHHHHHHHHHhcChHHHHhhcCCcHHHHHHHHHHHH
Q 000731 934 LLMRYTIDLRLQRFENALKHIVSM---G------------DSYHADCLNLMKKYAQLFPLGLKLITDPAKMEQVLEAWAD 998 (1325)
Q Consensus 934 ~~~~~~Id~~L~rye~Al~~l~~~---g------------~~~~d~ale~~~~~~~ly~~AL~L~~d~~~~~~i~~~~a~ 998 (1325)
.+-+.+.-+++++|++|++.-+.. . .-++....++...| |.+||.|-.|-.+.+..+ ...+
T Consensus 172 ~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~h---f~qal~ldpdh~~sk~~~-~~~k 247 (486)
T KOG0550|consen 172 KLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINH---FQQALRLDPDHQKSKSAS-MMPK 247 (486)
T ss_pred HHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHH---HhhhhccChhhhhHHhHh-hhHH
Confidence 345567788999999988743321 1 11234444555556 888888752222222222 1111
Q ss_pred HHhccccHHHHHHHHHHcCCHHHHHHHHHHcCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHH-------HH
Q 000731 999 HLSDVKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEA-------AK 1071 (1325)
Q Consensus 999 ~L~~~~~~~eAa~~y~~ag~~ekAl~~y~~ag~W~~al~la~~l~~~~~~~~~l~~~la~~L~~~~~~~eA-------a~ 1071 (1325)
.|+ .+.+-+..--+-|+|.+|-+||.++-+.+ +...+-...++...|......|+..|| +.
T Consensus 248 ~le---~~k~~gN~~fk~G~y~~A~E~Yteal~id---------P~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~ 315 (486)
T KOG0550|consen 248 KLE---VKKERGNDAFKNGNYRKAYECYTEALNID---------PSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK 315 (486)
T ss_pred HHH---HHHhhhhhHhhccchhHHHHHHHHhhcCC---------ccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh
Confidence 111 12233333334455566666664433211 101111223444445444445554444 33
Q ss_pred HHHHhcCCHHHHHHHHHHhcCHHHHHHHH
Q 000731 1072 IALDYCGDVTNGISLLIDARDWEEALRVA 1100 (1325)
Q Consensus 1072 i~~~yl~d~e~Av~~~~~~~~w~eA~rLa 1100 (1325)
|=-.|+.-+-.+..+|...++|++|++=.
T Consensus 316 iD~syikall~ra~c~l~le~~e~AV~d~ 344 (486)
T KOG0550|consen 316 IDSSYIKALLRRANCHLALEKWEEAVEDY 344 (486)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33345555566667777777777777643
No 474
>PRK13615 lipoprotein LpqB; Provisional
Probab=89.53 E-value=21 Score=45.19 Aligned_cols=158 Identities=16% Similarity=0.086 Sum_probs=87.2
Q ss_pred EEEEEcCCCCeEEEEeCCccEEEEeecCceeeeeeccccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccC
Q 000731 120 RFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSK 199 (1325)
Q Consensus 120 ~~~awSPDG~~LA~~s~dgtV~l~s~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~ 199 (1325)
.+++.|+||..+|....++.+.++..... .... +. ......-+|.++|-.=. +. + +
T Consensus 337 ~s~avS~dg~~~A~v~~~~~l~vg~~~~~-~~~~-~~----------------~~~Lt~PS~d~~g~vWt-v~--~---g 392 (557)
T PRK13615 337 DAATLSADGRQAAVRNASGVWSVGDGDRD-AVLL-DT----------------RPGLVAPSLDAQGYVWS-TP--A---S 392 (557)
T ss_pred ccceEcCCCceEEEEcCCceEEEecCCCc-ceee-cc----------------CCccccCcCcCCCCEEE-Ee--C---C
Confidence 78999999999999988876655422101 1100 00 01346788888884322 32 1 1
Q ss_pred CCCEEEEEECCCCceeeeec--CCCCceeEEEEccCCCeEEEEecCCCCCCCCeEEE--EeCCCceEEEE-E--ec-cCC
Q 000731 200 LHKRLKVWERDSGTLQASSE--LKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVF--YERNGLERSSF-D--IN-EQI 271 (1325)
Q Consensus 200 ~d~~irVWd~~~G~l~~t~e--~~~~~v~~lawsPdG~~IAs~~~d~~~~~~~~V~~--~e~nGl~~~~f-~--l~-~~~ 271 (1325)
..+.+..... +|.....-- ...+.|..+..|+||..+|...+... +..|.+ -.|.|.....+ + +. .+.
T Consensus 393 ~~~~l~~~~~-~G~~~~v~v~~~~~~~I~~lrvSrDG~R~Avi~~~~g---~~~V~va~V~R~~~~P~~L~~~p~~l~~~ 468 (557)
T PRK13615 393 DPRGLVAWGP-DGVGHPVAVSWTATGRVVSLEVARDGARVLVQLETGA---GPQLLVASIVRDGGVPTSLTTTPLELLAS 468 (557)
T ss_pred CceEEEEecC-CCceEEeeccccCCCeeEEEEeCCCccEEEEEEecCC---CCEEEEEEEEeCCCcceEeeeccEEcccC
Confidence 1223333333 566543311 13357899999999999998765322 233433 45543311111 1 11 122
Q ss_pred CCcEEEEEEccCCCeeEEEEccCCCCeEEEEEee
Q 000731 272 DSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFS 305 (1325)
Q Consensus 272 ~~~V~~laWSpDg~~LAs~~~d~~~~~VqLW~~~ 305 (1325)
...+.+++|..|+++.+.+...+....+++-.+.
T Consensus 469 l~~v~sl~W~~~~~laVl~~~~~~~~~v~~v~v~ 502 (557)
T PRK13615 469 PGTPLDATWVDELDVATLTLAPDGERQVELHQVG 502 (557)
T ss_pred cCcceeeEEcCCCEEEEEeccCCCCceEEEEECC
Confidence 3478999999999977766433322245555544
No 475
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=89.44 E-value=60 Score=39.64 Aligned_cols=226 Identities=13% Similarity=0.165 Sum_probs=96.8
Q ss_pred CCcEEEEeeccccccCCCCEEEEEECC----CCceeeeecC-----CCCce--eEEEEccCCCeEEEEecCCCCCCCCeE
Q 000731 184 DGKYFATLSEFCNSSKLHKRLKVWERD----SGTLQASSEL-----KAFMG--AVLEWMPSGANIAAVYDRKSENKCPSI 252 (1325)
Q Consensus 184 DG~~lAtvss~d~~~~~d~~irVWd~~----~G~l~~t~e~-----~~~~v--~~lawsPdG~~IAs~~~d~~~~~~~~V 252 (1325)
+.++|. +.+.. ..+|.|.|.. .-++..+-|+ ..+.. +.+---|+|+.+.|+-.++.+..++.+
T Consensus 86 ~Rr~Li-~PgL~-----SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf 159 (461)
T PF05694_consen 86 ERRYLI-LPGLR-----SSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGF 159 (461)
T ss_dssp -S-EEE-EEBTT-----T--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EE
T ss_pred cCCcEE-eeeec-----cCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcE
Confidence 456777 66553 3678888874 3355665553 11221 445556899988887655554556677
Q ss_pred EEEeCCCc-eEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCC-----------------CCeEEEEEeeCCeeEEEeE
Q 000731 253 VFYERNGL-ERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEE-----------------YDSVKICFFSNNHWYLKYE 314 (1325)
Q Consensus 253 ~~~e~nGl-~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~-----------------~~~VqLW~~~n~~wylkqe 314 (1325)
.+.+.++. ..+.+.........-.++-|.|--.++.+..-..+ ++++.+||+.... ++|+
T Consensus 160 ~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~--~~Q~ 237 (461)
T PF05694_consen 160 VLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRK--LLQT 237 (461)
T ss_dssp EEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTE--EEEE
T ss_pred EEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCc--EeeE
Confidence 77776532 23333322222234568889998888887653321 4599999998754 5788
Q ss_pred EEEecCCc----EEEEEccCCCcEEEEEecCCcEEEEEEEEeeeeCCC-eeEEEEeCCEEEEeecCCcCCCCCceeeee-
Q 000731 315 IRYLRRDG----IRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMEN-STALVIDGSKILVTPLSLSLMPPPMYLFSL- 388 (1325)
Q Consensus 315 l~~~~~~~----~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~-~~v~viDG~~l~lt~l~~~~vPpPm~~~~l- 388 (1325)
+....+.. +...|+|+...-+.-.-.++++ |.|--+.++. ..=.||+-... +...+.+|+ |- +.+
T Consensus 238 idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i----~~~~k~~~g~W~a~kVi~ip~~---~v~~~~lp~-ml-~~~~ 308 (461)
T PF05694_consen 238 IDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSI----WRFYKDDDGEWAAEKVIDIPAK---KVEGWILPE-ML-KPFG 308 (461)
T ss_dssp EES-TTEEEEEEEEE-SSTT--EEEEEEE--EEE----EEEEE-ETTEEEEEEEEEE--E---E--SS---G-GG-GGG-
T ss_pred EecCCCCCceEEEEecCCCCccceEEEEeccceE----EEEEEcCCCCeeeeEEEECCCc---ccCcccccc-cc-cccc
Confidence 87754332 4456777776533222222222 2332211110 00112221111 122344432 21 111
Q ss_pred cCCCCEEEEEEecCCCCCE-EEEEECCCcEEEEeCCCCCcc
Q 000731 389 KFPTAVTEMAFYSKSSKNC-LAAILSDGCLCVVDLPAPDML 428 (1325)
Q Consensus 389 ~~~~~V~~VaFSpdg~~~~-LAs~s~Dgti~lw~~~~~~~~ 428 (1325)
..+.-|+++..|.|. +. .++.--+|.|+.||++++..+
T Consensus 309 ~~P~LitDI~iSlDD--rfLYvs~W~~GdvrqYDISDP~~P 347 (461)
T PF05694_consen 309 AVPPLITDILISLDD--RFLYVSNWLHGDVRQYDISDPFNP 347 (461)
T ss_dssp EE------EEE-TTS---EEEEEETTTTEEEEEE-SSTTS-
T ss_pred cCCCceEeEEEccCC--CEEEEEcccCCcEEEEecCCCCCC
Confidence 235678899999998 55 456667999999999876443
No 476
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=89.31 E-value=43 Score=43.94 Aligned_cols=79 Identities=15% Similarity=0.244 Sum_probs=51.5
Q ss_pred CCCCceeEEEEccCCCeEEEEecCCCCCCCCeEE-E---EeCCCceE-E--E-E--Eec-------cCCCCcEEEEEEcc
Q 000731 220 LKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIV-F---YERNGLER-S--S-F--DIN-------EQIDSTVELLKWNC 282 (1325)
Q Consensus 220 ~~~~~v~~lawsPdG~~IAs~~~d~~~~~~~~V~-~---~e~nGl~~-~--~-f--~l~-------~~~~~~V~~laWSp 282 (1325)
+...-|..|..||+|.++|-.+... ..|. + |-++|... | + . +.+ ......|..+.|.|
T Consensus 82 ~~~f~v~~i~~n~~g~~lal~G~~~-----v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP 156 (717)
T PF10168_consen 82 PPLFEVHQISLNPTGSLLALVGPRG-----VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHP 156 (717)
T ss_pred CCceeEEEEEECCCCCEEEEEcCCc-----EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcC
Confidence 3456689999999999999887632 1221 2 32233210 0 0 0 111 11234699999999
Q ss_pred CC---CeeEEEEccCCCCeEEEEEeeC
Q 000731 283 MS---DLLAAVVRFEEYDSVKICFFSN 306 (1325)
Q Consensus 283 Dg---~~LAs~~~d~~~~~VqLW~~~n 306 (1325)
.| ..|++-++|. ++++|++.+
T Consensus 157 ~s~~~~~l~vLtsdn---~lR~y~~~~ 180 (717)
T PF10168_consen 157 WSESDSHLVVLTSDN---TLRLYDISD 180 (717)
T ss_pred CCCCCCeEEEEecCC---EEEEEecCC
Confidence 85 7888888888 999999975
No 477
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=89.01 E-value=11 Score=49.93 Aligned_cols=156 Identities=13% Similarity=0.115 Sum_probs=93.3
Q ss_pred HHHHHhcChHHHHhhc-----CCcHHHHHHHHHHHHHHhccccHHHHHHHHHHcCCHHHHHHHHHHcCCHHHHHHHHhh-
Q 000731 968 LMKKYAQLFPLGLKLI-----TDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGL- 1041 (1325)
Q Consensus 968 ~~~~~~~ly~~AL~L~-----~d~~~~~~i~~~~a~~L~~~~~~~eAa~~y~~ag~~ekAl~~y~~ag~W~~al~la~~- 1041 (1325)
++.+. +.+++|.+.| .|| .-..+++.||.+|+.. +.++|..||. ||+..|+..+++.+++.+=..
T Consensus 125 ~Ydk~-g~~~ka~~~yer~L~~D~-~n~~aLNn~AY~~ae~-dL~KA~~m~~------KAV~~~i~~kq~~~~~e~W~k~ 195 (906)
T PRK14720 125 AYAKL-NENKKLKGVWERLVKADR-DNPEIVKKLATSYEEE-DKEKAITYLK------KAIYRFIKKKQYVGIEEIWSKL 195 (906)
T ss_pred HHHHc-CChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHh-hHHHHHHHHH------HHHHHHHhhhcchHHHHHHHHH
Confidence 44555 6666666665 354 3456889999999999 9999999885 588889888876666553322
Q ss_pred cCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcCCHHHHHHHHHHhcCHHHHHHHHHh---cCCchhHHHHHHHHHH
Q 000731 1042 LKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCGDVTNGISLLIDARDWEEALRVAFM---HRREDLITKVKHASLE 1118 (1325)
Q Consensus 1042 l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~yl~d~e~Av~~~~~~~~w~eA~rLa~~---~~~~dL~e~v~~~l~e 1118 (1325)
+...+++...+.+-+-..+.+.+ +..++.++ .--...|-+.++|++++.+.+. |...+ .+++.+
T Consensus 196 ~~~~~~d~d~f~~i~~ki~~~~~-~~~~~~~~-------~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n-----~~a~~~ 262 (906)
T PRK14720 196 VHYNSDDFDFFLRIERKVLGHRE-FTRLVGLL-------EDLYEPYKALEDWDEVIYILKKILEHDNKN-----NKAREE 262 (906)
T ss_pred HhcCcccchHHHHHHHHHHhhhc-cchhHHHH-------HHHHHHHhhhhhhhHHHHHHHHHHhcCCcc-----hhhHHH
Confidence 22344555554444444444444 33333333 3356788899999999876543 33221 122222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000731 1119 CASSLIGEYKEGLEKVGKYLTRYLAVRQR 1147 (1325)
Q Consensus 1119 ~~~~~~e~l~~~~~~~~k~~~Rl~~vR~~ 1147 (1325)
-+......+.+ ..+|+.++ |+..+|+.
T Consensus 263 l~~~y~~kY~~-~~~~ee~l-~~s~l~~~ 289 (906)
T PRK14720 263 LIRFYKEKYKD-HSLLEDYL-KMSDIGNN 289 (906)
T ss_pred HHHHHHHHccC-cchHHHHH-HHhccccC
Confidence 22222233444 55555554 67777776
No 478
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=88.98 E-value=48 Score=37.94 Aligned_cols=188 Identities=15% Similarity=0.142 Sum_probs=98.1
Q ss_pred cccccCCCCCCEEEEEEccCCCEEEEEECCC--cEEEEeCCCCeEEEeceec-----CcEEEEEEcCCCCeEEEEeCCcc
Q 000731 67 IEHIDLEPGDSITAFDYLMEKEALIVGTSSG--LLLLHSVDGNATEVVGRVE-----GGVRFISPSPDGDLLGVTTGFGQ 139 (1325)
Q Consensus 67 l~~~~~~~~~~V~~v~~spdg~~La~as~dG--~I~lw~~~~~~~e~vg~~~-----~~I~~~awSPDG~~LA~~s~dgt 139 (1325)
+..+|..+....-++.|..||..+-+.+.-| .|+.+|+.++++...-..+ .||+.+ ++++....=.+++
T Consensus 36 v~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~----~d~l~qLTWk~~~ 111 (264)
T PF05096_consen 36 VETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL----GDKLYQLTWKEGT 111 (264)
T ss_dssp EEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE----TTEEEEEESSSSE
T ss_pred EEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE----CCEEEEEEecCCe
Confidence 3445555667788999999998888888888 5777999987654221122 233332 2233333324555
Q ss_pred EEEEee-cCceeeeeeccccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEEEEECCCCceeeee
Q 000731 140 ILVMTH-DWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASS 218 (1325)
Q Consensus 140 V~l~s~-~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~ 218 (1325)
..++++ .++.+.+....... +.++ .||+.|. +| ++..++..+|+.+-+...+.
T Consensus 112 ~f~yd~~tl~~~~~~~y~~EG-----------------WGLt--~dg~~Li-~S------DGS~~L~~~dP~~f~~~~~i 165 (264)
T PF05096_consen 112 GFVYDPNTLKKIGTFPYPGEG-----------------WGLT--SDGKRLI-MS------DGSSRLYFLDPETFKEVRTI 165 (264)
T ss_dssp EEEEETTTTEEEEEEE-SSS-------------------EEE--ECSSCEE-EE-------SSSEEEEE-TTT-SEEEEE
T ss_pred EEEEccccceEEEEEecCCcc-----------------eEEE--cCCCEEE-EE------CCccceEEECCcccceEEEE
Confidence 555553 35555444443222 5666 6787777 55 34478888998665554432
Q ss_pred cCCC-----CceeEEEEccCCCeEEEEecCCCCCCCCeEEEEe-CCCceEEEEEec-------c-----CCCCcEEEEEE
Q 000731 219 ELKA-----FMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYE-RNGLERSSFDIN-------E-----QIDSTVELLKW 280 (1325)
Q Consensus 219 e~~~-----~~v~~lawsPdG~~IAs~~~d~~~~~~~~V~~~e-~nGl~~~~f~l~-------~-----~~~~~V~~laW 280 (1325)
.-.+ ...+-+-|- +|.+.|=.=. ...|...| .+|...+.+.+. . +.....+.|||
T Consensus 166 ~V~~~g~pv~~LNELE~i-~G~IyANVW~------td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAy 238 (264)
T PF05096_consen 166 QVTDNGRPVSNLNELEYI-NGKIYANVWQ------TDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAY 238 (264)
T ss_dssp E-EETTEE---EEEEEEE-TTEEEEEETT------SSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEE
T ss_pred EEEECCEECCCcEeEEEE-cCEEEEEeCC------CCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeE
Confidence 2111 123445553 5655553311 12344444 345555554433 0 11345789999
Q ss_pred ccCCCeeEEEE
Q 000731 281 NCMSDLLAAVV 291 (1325)
Q Consensus 281 SpDg~~LAs~~ 291 (1325)
.|+++.|-+.+
T Consensus 239 d~~~~~l~vTG 249 (264)
T PF05096_consen 239 DPETDRLFVTG 249 (264)
T ss_dssp ETTTTEEEEEE
T ss_pred eCCCCEEEEEe
Confidence 99887766654
No 479
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=88.84 E-value=2.5 Score=55.75 Aligned_cols=94 Identities=11% Similarity=0.069 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHHHhccccHHHHHHHHHHcCCHHHHHHHHHHcCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCCh
Q 000731 987 AKMEQVLEAWADHLSDVKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKP 1066 (1325)
Q Consensus 987 ~~~~~i~~~~a~~L~~~~~~~eAa~~y~~ag~~ekAl~~y~~ag~W~~al~la~~l~~~~~~~~~l~~~la~~L~~~~~~ 1066 (1325)
.-...+|...+++..++.-+..=|.+|.+.|++++|..+|.++-.|+ +++ ...+..+|..+... +.
T Consensus 100 ~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D------------~~n-~~aLNn~AY~~ae~-dL 165 (906)
T PRK14720 100 AIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD------------RDN-PEIVKKLATSYEEE-DK 165 (906)
T ss_pred hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC------------ccc-HHHHHHHHHHHHHh-hH
Confidence 34556666667766666556666677777777777777764444332 222 24667777777777 88
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhcCHHHHHHHHH
Q 000731 1067 GEAAKIALDYCGDVTNGISLLIDARDWEEALRVAF 1101 (1325)
Q Consensus 1067 ~eAa~i~~~yl~d~e~Av~~~~~~~~w~eA~rLa~ 1101 (1325)
+.|.+.+.+ ||..|+.-+++.++..+=.
T Consensus 166 ~KA~~m~~K-------AV~~~i~~kq~~~~~e~W~ 193 (906)
T PRK14720 166 EKAITYLKK-------AIYRFIKKKQYVGIEEIWS 193 (906)
T ss_pred HHHHHHHHH-------HHHHHHhhhcchHHHHHHH
Confidence 888887666 9999999999999987543
No 480
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=88.58 E-value=22 Score=46.61 Aligned_cols=121 Identities=13% Similarity=0.151 Sum_probs=74.7
Q ss_pred cChHHHHhhc----CCcHHHHHHHHHHHHHHhccccHHHHHHHHHHcC-------CH---HHHHHHHHHcCCHHHHHHHH
Q 000731 974 QLFPLGLKLI----TDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCS-------SL---EKAMKAYRASGNWSGVLTVA 1039 (1325)
Q Consensus 974 ~ly~~AL~L~----~d~~~~~~i~~~~a~~L~~~~~~~eAa~~y~~ag-------~~---ekAl~~y~~ag~W~~al~la 1039 (1325)
+-|..|+.+| .......+++.-.|.-+..+++|..|..+|+.|- +. --..++|.++|.|++|...+
T Consensus 660 g~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~l 739 (1018)
T KOG2002|consen 660 GRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEAL 739 (1018)
T ss_pred cCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 6677777777 1222344677778888888899999999998872 11 22347778888888885433
Q ss_pred ---hhcCCCHH----HHHHHHHHHHHHHHHcCChHHHHHHHHHhcCCHHHHHHHHHHhcCHHHH
Q 000731 1040 ---GLLKLGKD----EVAKLAQELCEELQALGKPGEAAKIALDYCGDVTNGISLLIDARDWEEA 1096 (1325)
Q Consensus 1040 ---~~l~~~~~----~~~~l~~~la~~L~~~~~~~eAa~i~~~yl~d~e~Av~~~~~~~~w~eA 1096 (1325)
..+..... .+..++.++|+...+..+ .-..++... .++.+.|+++++..+...+=
T Consensus 740 l~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k-~t~eev~~a-~~~le~a~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 740 LKARHLAPSNTSVKFNLALVLKKLAESILRLEK-RTLEEVLEA-VKELEEARRLFTELSKNGDK 801 (1018)
T ss_pred HHHHHhCCccchHHhHHHHHHHHHHHHHHhccc-ccHHHHHHH-HHHHHHHHHHHHHHHhcCCC
Confidence 33322211 223455566666554443 344455444 67888888888877655443
No 481
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=88.53 E-value=66 Score=38.97 Aligned_cols=64 Identities=17% Similarity=0.265 Sum_probs=42.1
Q ss_pred CCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEEEeCCCCeE
Q 000731 31 EQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNAT 109 (1325)
Q Consensus 31 ~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~V~~v~~spdg~~La~as~dG~I~lw~~~~~~~ 109 (1325)
+++.||+++.++.++.+|. .+++..|+.. ++.... ...+. .+..+.+++.+|.|.-+|..+++.
T Consensus 119 ~~~~v~v~~~~g~l~ald~--~tG~~~W~~~-~~~~~~------ssP~v------~~~~v~v~~~~g~l~ald~~tG~~ 182 (394)
T PRK11138 119 AGGKVYIGSEKGQVYALNA--EDGEVAWQTK-VAGEAL------SRPVV------SDGLVLVHTSNGMLQALNESDGAV 182 (394)
T ss_pred ECCEEEEEcCCCEEEEEEC--CCCCCccccc-CCCcee------cCCEE------ECCEEEEECCCCEEEEEEccCCCE
Confidence 4678999988889999999 7888888754 111110 01111 134566677788888888877654
No 482
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=88.51 E-value=1.7 Score=43.63 Aligned_cols=92 Identities=17% Similarity=0.096 Sum_probs=50.9
Q ss_pred hhccccHHHhhcCHHHHHHHHHHc---CCC---cHHHHHHHH---HHHhcChHHHHhhc-------CCcHHHHHHHHHHH
Q 000731 934 LLMRYTIDLRLQRFENALKHIVSM---GDS---YHADCLNLM---KKYAQLFPLGLKLI-------TDPAKMEQVLEAWA 997 (1325)
Q Consensus 934 ~~~~~~Id~~L~rye~Al~~l~~~---g~~---~~d~ale~~---~~~~~ly~~AL~L~-------~d~~~~~~i~~~~a 997 (1325)
.++.+...+.+|+.++|+.+|.++ |.+ +....|.+- +.. +.+++|+.++ .+++-...+..-+|
T Consensus 4 ~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~L-G~~deA~~~L~~~~~~~p~~~~~~~l~~f~A 82 (120)
T PF12688_consen 4 LYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNL-GRYDEALALLEEALEEFPDDELNAALRVFLA 82 (120)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHCCCccccHHHHHHHH
Confidence 345566677788888888887764 211 112222221 455 6777777666 12222344445566
Q ss_pred HHHhccccHHHHHHHHHHc-----CCHHHHHHHH
Q 000731 998 DHLSDVKCFEDAATTYFCC-----SSLEKAMKAY 1026 (1325)
Q Consensus 998 ~~L~~~~~~~eAa~~y~~a-----g~~ekAl~~y 1026 (1325)
.-|...+++++|...+..+ ..|++|+..|
T Consensus 83 l~L~~~gr~~eAl~~~l~~la~~~~~y~ra~~~y 116 (120)
T PF12688_consen 83 LALYNLGRPKEALEWLLEALAETLPRYRRAIRFY 116 (120)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6667777777776666543 3445555444
No 483
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.71 E-value=31 Score=43.09 Aligned_cols=66 Identities=17% Similarity=0.125 Sum_probs=39.5
Q ss_pred HHHHcCCHHHHHHHHHHcCC-HHHHHHHHhhc-CCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHhc
Q 000731 1012 TYFCCSSLEKAMKAYRASGN-WSGVLTVAGLL-KLGKDEVAKLAQELCEELQALGKPGEAAKIALDYC 1077 (1325)
Q Consensus 1012 ~y~~ag~~ekAl~~y~~ag~-W~~al~la~~l-~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~yl 1077 (1325)
.+...|+|.+|++....+.+ =++-+.--..- ..-++++..+-..||-.|+.+|+-+||-.+|...+
T Consensus 184 ~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i 251 (652)
T KOG2376|consen 184 ILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDII 251 (652)
T ss_pred HHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 34455677777766654421 01111100000 01134667788889999999999999999998853
No 484
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=87.45 E-value=1.8 Score=48.33 Aligned_cols=71 Identities=17% Similarity=0.185 Sum_probs=48.2
Q ss_pred EEEEEEccCC-CeeEEEEccCCCCeEEEEEeeCCeeEEEeEEEEecCCcEEEEEccCCCcEEEEEecCCcEEEEEEEEee
Q 000731 275 VELLKWNCMS-DLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTT 353 (1325)
Q Consensus 275 V~~laWSpDg-~~LAs~~~d~~~~~VqLW~~~n~~wylkqel~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~ 353 (1325)
|.+++=.|.- .+++.|+.|+ .|-|||+.|.. |-...+..+....+-+.|||..|..|.+.+.+|.+ |.|+.
T Consensus 182 v~~l~~hp~qq~~v~cgt~dg---~~~l~d~rn~~-~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGsl----w~wda 253 (319)
T KOG4714|consen 182 VTALCSHPAQQHLVCCGTDDG---IVGLWDARNVA-MPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSL----WHWDA 253 (319)
T ss_pred chhhhCCcccccEEEEecCCC---eEEEEEccccc-chHHHHHHhhhhhhheeccCCCchheeEecCCCcE----EEEcC
Confidence 6677766654 4666777777 89999998852 11111222222337799999999989898889987 56654
No 485
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=87.05 E-value=37 Score=43.09 Aligned_cols=81 Identities=14% Similarity=0.159 Sum_probs=57.3
Q ss_pred EEeeecCCCEEEEEeCC------------C----cEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCC
Q 000731 25 FSALDIEQNRLFFASSA------------N----NIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKE 88 (1325)
Q Consensus 25 ~~~~d~~~~~l~~~s~~------------~----~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~V~~v~~spdg~ 88 (1325)
..++|++.+.||+.+.+ + .|+..|+ .|++..|.-.+++-|+= ++.......-+..-.+|+
T Consensus 238 ~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~--~TG~~~W~~Q~~~~D~w--D~d~~~~p~l~d~~~~G~ 313 (527)
T TIGR03075 238 TGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDP--DTGKIKWHYQTTPHDEW--DYDGVNEMILFDLKKDGK 313 (527)
T ss_pred ceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEcc--ccCCEEEeeeCCCCCCc--cccCCCCcEEEEeccCCc
Confidence 45999999999998633 1 5888898 78888787666554431 222223334444445776
Q ss_pred ---EEEEEECCCcEEEEeCCCCeE
Q 000731 89 ---ALIVGTSSGLLLLHSVDGNAT 109 (1325)
Q Consensus 89 ---~La~as~dG~I~lw~~~~~~~ 109 (1325)
.++.++.+|.+.+.|..+++.
T Consensus 314 ~~~~v~~~~K~G~~~vlDr~tG~~ 337 (527)
T TIGR03075 314 PRKLLAHADRNGFFYVLDRTNGKL 337 (527)
T ss_pred EEEEEEEeCCCceEEEEECCCCce
Confidence 788999999999999988764
No 486
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=87.00 E-value=18 Score=40.21 Aligned_cols=25 Identities=24% Similarity=0.135 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHH
Q 000731 1051 KLAQELCEELQALGKPGEAAKIALD 1075 (1325)
Q Consensus 1051 ~l~~~la~~L~~~~~~~eAa~i~~~ 1075 (1325)
+....++..+...|++++|..++..
T Consensus 204 ~a~~~l~~~~~~lg~~~~A~~~~~~ 228 (235)
T TIGR03302 204 EALARLVEAYLKLGLKDLAQDAAAV 228 (235)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4556777777777777777776655
No 487
>PRK11189 lipoprotein NlpI; Provisional
Probab=86.85 E-value=11 Score=43.84 Aligned_cols=77 Identities=13% Similarity=0.025 Sum_probs=41.7
Q ss_pred hccccHHHhhcCHHHHHHHHHHc---CCCc----HHHHHHHHHHHhcChHHHHhhc-----CCcHHHHHHHHHHHHHHhc
Q 000731 935 LMRYTIDLRLQRFENALKHIVSM---GDSY----HADCLNLMKKYAQLFPLGLKLI-----TDPAKMEQVLEAWADHLSD 1002 (1325)
Q Consensus 935 ~~~~~Id~~L~rye~Al~~l~~~---g~~~----~d~ale~~~~~~~ly~~AL~L~-----~d~~~~~~i~~~~a~~L~~ 1002 (1325)
...+.+...+|+|++|+..|.++ .+++ ...++-+ ... +.|++|++.+ .+|... ....|...+..
T Consensus 102 ~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l-~~~-g~~~eA~~~~~~al~~~P~~~--~~~~~~~l~~~ 177 (296)
T PRK11189 102 NYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIAL-YYG-GRYELAQDDLLAFYQDDPNDP--YRALWLYLAES 177 (296)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHC-CCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHc
Confidence 34456777888899998887765 2322 1222222 345 6777777766 233221 11122223344
Q ss_pred cccHHHHHHHHHH
Q 000731 1003 VKCFEDAATTYFC 1015 (1325)
Q Consensus 1003 ~~~~~eAa~~y~~ 1015 (1325)
.+++++|...|.+
T Consensus 178 ~~~~~~A~~~l~~ 190 (296)
T PRK11189 178 KLDPKQAKENLKQ 190 (296)
T ss_pred cCCHHHHHHHHHH
Confidence 5567777776643
No 488
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=86.73 E-value=3.4 Score=47.42 Aligned_cols=97 Identities=13% Similarity=0.057 Sum_probs=51.3
Q ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHhcChHHHHhhcCCcHHHHHHHHHHHHHHhccccHHHHHHHHHHcCCHHHHHHHH
Q 000731 947 FENALKHIVSMGDSYHADCLNLMKKYAQLFPLGLKLITDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSSLEKAMKAY 1026 (1325)
Q Consensus 947 ye~Al~~l~~~g~~~~d~ale~~~~~~~ly~~AL~L~~d~~~~~~i~~~~a~~L~~~~~~~eAa~~y~~ag~~ekAl~~y 1026 (1325)
|+.|+.++.+.|. +++|++. |+..++.|.+......++-.+|+.+...++|++|...|..
T Consensus 146 Y~~A~~l~~~~~~--y~~Ai~a-------f~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~----------- 205 (263)
T PRK10803 146 YNAAIALVQDKSR--QDDAIVA-------FQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFAS----------- 205 (263)
T ss_pred HHHHHHHHHhcCC--HHHHHHH-------HHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHH-----------
Confidence 6666666555444 5666543 3333455534444455555666666666666555544322
Q ss_pred HHcCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000731 1027 RASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALD 1075 (1325)
Q Consensus 1027 ~~ag~W~~al~la~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~ 1075 (1325)
++ ..++.+ ....+....++..+...|++.+|..+|.+
T Consensus 206 --------vv---~~yP~s-~~~~dAl~klg~~~~~~g~~~~A~~~~~~ 242 (263)
T PRK10803 206 --------VV---KNYPKS-PKAADAMFKVGVIMQDKGDTAKAKAVYQQ 242 (263)
T ss_pred --------HH---HHCCCC-cchhHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 22 122311 12234455566666667777777777665
No 489
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=86.69 E-value=72 Score=37.42 Aligned_cols=139 Identities=19% Similarity=0.291 Sum_probs=78.4
Q ss_pred CCEEEEEEC----------CCcEEEEeCCCC-----eEEEec--eecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCce
Q 000731 87 KEALIVGTS----------SGLLLLHSVDGN-----ATEVVG--RVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDL 149 (1325)
Q Consensus 87 g~~La~as~----------dG~I~lw~~~~~-----~~e~vg--~~~~~I~~~awSPDG~~LA~~s~dgtV~l~s~~~d~ 149 (1325)
.+.||+|++ .|.|.+++.... +++.+. .++++|.+++-- +|. |+.+.+ ++|.++....+.
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~~-lv~~~g-~~l~v~~l~~~~ 118 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NGR-LVVAVG-NKLYVYDLDNSK 118 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TTE-EEEEET-TEEEEEEEETTS
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CCE-EEEeec-CEEEEEEccCcc
Confidence 467777764 289999998773 555432 357888887766 444 555555 478777543332
Q ss_pred -eeeeeccccCCCceeccCccccCCCCeEEEEEecCCcEEEEeeccccccCCCCEEE--EEECCCCc-eeeee-cCCCCc
Q 000731 150 -LYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLK--VWERDSGT-LQASS-ELKAFM 224 (1325)
Q Consensus 150 -~~e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lAtvss~d~~~~~d~~ir--VWd~~~G~-l~~t~-e~~~~~ 224 (1325)
+....... ....+.++...+| +++ ++.. .+.+. -|+. ++. +.... .....+
T Consensus 119 ~l~~~~~~~--------------~~~~i~sl~~~~~--~I~-vgD~------~~sv~~~~~~~-~~~~l~~va~d~~~~~ 174 (321)
T PF03178_consen 119 TLLKKAFYD--------------SPFYITSLSVFKN--YIL-VGDA------MKSVSLLRYDE-ENNKLILVARDYQPRW 174 (321)
T ss_dssp SEEEEEEE---------------BSSSEEEEEEETT--EEE-EEES------SSSEEEEEEET-TTE-EEEEEEESS-BE
T ss_pred cchhhheec--------------ceEEEEEEecccc--EEE-EEEc------ccCEEEEEEEc-cCCEEEEEEecCCCcc
Confidence 22111111 1124577776644 777 6643 23344 4576 444 43332 234556
Q ss_pred eeEEEEccCCCeEEEEecCCCCCCCCeEEEEeCC
Q 000731 225 GAVLEWMPSGANIAAVYDRKSENKCPSIVFYERN 258 (1325)
Q Consensus 225 v~~lawsPdG~~IAs~~~d~~~~~~~~V~~~e~n 258 (1325)
+.++.+=+|++.++++..+ +.|.++..+
T Consensus 175 v~~~~~l~d~~~~i~~D~~------gnl~~l~~~ 202 (321)
T PF03178_consen 175 VTAAEFLVDEDTIIVGDKD------GNLFVLRYN 202 (321)
T ss_dssp EEEEEEE-SSSEEEEEETT------SEEEEEEE-
T ss_pred EEEEEEecCCcEEEEEcCC------CeEEEEEEC
Confidence 7888998888877766653 568777654
No 490
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=85.80 E-value=29 Score=41.12 Aligned_cols=108 Identities=19% Similarity=0.228 Sum_probs=63.9
Q ss_pred ceeEEeeecCCCEEEEEeCCCc------EEEEecccccc-cccceeeccccccccccCCC-CC--------CEEEEEEcc
Q 000731 22 ILQFSALDIEQNRLFFASSANN------IYSAQLSSFQN-ERASIKTAISAEIEHIDLEP-GD--------SITAFDYLM 85 (1325)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~------i~~~~~~~~~~-~~~~~~~~l~~~l~~~~~~~-~~--------~V~~v~~sp 85 (1325)
.+.++++|++++.+|.+|+++. ++..++. .. .....+.- ...+++.. .+ -.-+|++.+
T Consensus 21 GlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~--~~~~~~~~~~~----~~~~~L~~~~G~~~~~~~~D~Egi~~~~ 94 (326)
T PF13449_consen 21 GLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRID--YDQGGIGGVTI----LDMIPLRDPDGQPFPKNGLDPEGIAVPP 94 (326)
T ss_pred cEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEee--ccCCCccceEe----ccceeccCCCCCcCCcCCCChhHeEEec
Confidence 6788999999999999999998 8877763 21 00001110 01111111 11 233788866
Q ss_pred CCCEEEEEECCC-------cEEEEeCCCCeEE-E-----e--------c-eecCcEEEEEEcCCCCeEEEEeC
Q 000731 86 EKEALIVGTSSG-------LLLLHSVDGNATE-V-----V--------G-RVEGGVRFISPSPDGDLLGVTTG 136 (1325)
Q Consensus 86 dg~~La~as~dG-------~I~lw~~~~~~~e-~-----v--------g-~~~~~I~~~awSPDG~~LA~~s~ 136 (1325)
+|..++ +++.+ .|.-++.++...+ + . + ....|..+++++|||+.|.++.+
T Consensus 95 ~g~~~i-s~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E 166 (326)
T PF13449_consen 95 DGSFWI-SSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAME 166 (326)
T ss_pred CCCEEE-EeCCccCCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEEC
Confidence 665554 45544 5666777653221 1 1 1 12468999999999997777654
No 491
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=85.79 E-value=7.3 Score=41.93 Aligned_cols=92 Identities=21% Similarity=0.160 Sum_probs=59.1
Q ss_pred CCcHHHHHHHHHHHHHHhccccHHHHHHHHHHcCCHH-----------HHHHHHHHcCCHHHHHHHHhhcC------CCH
Q 000731 984 TDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSSLE-----------KAMKAYRASGNWSGVLTVAGLLK------LGK 1046 (1325)
Q Consensus 984 ~d~~~~~~i~~~~a~~L~~~~~~~eAa~~y~~ag~~e-----------kAl~~y~~ag~W~~al~la~~l~------~~~ 1046 (1325)
...++.+..+...|+|+...|++++|...|.++-++- .-++..+..++|..+.....+.. .+.
T Consensus 30 ~~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~ 109 (177)
T PF10602_consen 30 LGKESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDW 109 (177)
T ss_pred cchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchH
Confidence 4667889999999999999999999999999986652 23456667778887765543321 111
Q ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000731 1047 DEVAKLAQELCEELQALGKPGEAAKIALD 1075 (1325)
Q Consensus 1047 ~~~~~l~~~la~~L~~~~~~~eAa~i~~~ 1075 (1325)
+..+.+----|=..-..|+|.+||+.|++
T Consensus 110 ~~~nrlk~~~gL~~l~~r~f~~AA~~fl~ 138 (177)
T PF10602_consen 110 ERRNRLKVYEGLANLAQRDFKEAAELFLD 138 (177)
T ss_pred HHHHHHHHHHHHHHHHhchHHHHHHHHHc
Confidence 11122211112222346777777777777
No 492
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=85.51 E-value=4 Score=53.65 Aligned_cols=102 Identities=13% Similarity=0.002 Sum_probs=67.5
Q ss_pred CCCEEEEEEccCCC-EEEEEECCCcEEEEeCCCC--eEEEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecCceee
Q 000731 75 GDSITAFDYLMEKE-ALIVGTSSGLLLLHSVDGN--ATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLY 151 (1325)
Q Consensus 75 ~~~V~~v~~spdg~-~La~as~dG~I~lw~~~~~--~~e~vg~~~~~I~~~awSPDG~~LA~~s~dgtV~l~s~~~d~~~ 151 (1325)
...+.++.|.|.=. ..|+...|+.|.+..+.-. .++. +.+...++|++|||-|+.|+++-..|+++-+.-..+...
T Consensus 155 ~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s-~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~ 233 (1405)
T KOG3630|consen 155 PVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTS-FPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKS 233 (1405)
T ss_pred ccccccccccCCccchhhhhccccchhhhhhhhhhhhhcc-cCcccceeeEEeccccceeeEecCCCeEEEeecccceee
Confidence 34577888988643 3455678888887665421 1222 234566899999999999999999999976544333333
Q ss_pred eeeccccCCCceeccCccccCCCCeEEEEEecCCcEEE
Q 000731 152 ENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFA 189 (1325)
Q Consensus 152 e~~l~~~~~~~~Vs~tqf~~~~~~i~~isWspDG~~lA 189 (1325)
+++-.+.. . ...|.+|+|=..-.|++
T Consensus 234 ~ip~Pp~~-----------e-~yrvl~v~Wl~t~eflv 259 (1405)
T KOG3630|consen 234 EIPEPPVE-----------E-NYRVLSVTWLSTQEFLV 259 (1405)
T ss_pred cccCCCcC-----------C-CcceeEEEEecceeEEE
Confidence 33322211 1 24679999999888877
No 493
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=85.34 E-value=2.7 Score=44.95 Aligned_cols=30 Identities=30% Similarity=0.230 Sum_probs=25.3
Q ss_pred cEEEEEEcCCC------CeEEEEeCCccEEEEeecC
Q 000731 118 GVRFISPSPDG------DLLGVTTGFGQILVMTHDW 147 (1325)
Q Consensus 118 ~I~~~awSPDG------~~LA~~s~dgtV~l~s~~~ 147 (1325)
.|.+++|||-| -+||+.|.++.|.+|....
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 79999999965 4799999999999986543
No 494
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.30 E-value=93 Score=41.36 Aligned_cols=102 Identities=13% Similarity=0.153 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHhccccHHHHHHHHHHcC---CHHHHHHHHHHcCCHHHHH---HHHhhc-C---CCHH------------
Q 000731 990 EQVLEAWADHLSDVKCFEDAATTYFCCS---SLEKAMKAYRASGNWSGVL---TVAGLL-K---LGKD------------ 1047 (1325)
Q Consensus 990 ~~i~~~~a~~L~~~~~~~eAa~~y~~ag---~~ekAl~~y~~ag~W~~al---~la~~l-~---~~~~------------ 1047 (1325)
..++...|.---+.+.-.+|...|.+|. +|.+-++...++|.|++++ .+|++- . .+.+
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyikadDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~AyAkt~rl~ 1183 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAYAKTNRLT 1183 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHhcCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHHHHhchHH
Confidence 4566667777777888899999999996 5677888889999999884 344431 1 1100
Q ss_pred HHH--------HHHHHHHHHHHHcCChHHHHHHHHH------------hcCCHHHHHHHHHHhc
Q 000731 1048 EVA--------KLAQELCEELQALGKPGEAAKIALD------------YCGDVTNGISLLIDAR 1091 (1325)
Q Consensus 1048 ~~~--------~l~~~la~~L~~~~~~~eAa~i~~~------------yl~d~e~Av~~~~~~~ 1091 (1325)
++. .-....++.+-+.|.|+.|.-+|-. |+|++..||+.-.+++
T Consensus 1184 elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKAn 1247 (1666)
T KOG0985|consen 1184 ELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKAN 1247 (1666)
T ss_pred HHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 110 1123455667778888777666543 4667777776666554
No 495
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.22 E-value=2.4 Score=55.40 Aligned_cols=90 Identities=22% Similarity=0.246 Sum_probs=64.1
Q ss_pred CCEEEEEECCCcEEEEeCCCCeE--EEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEeecC-ceeeeeeccccCCCce
Q 000731 87 KEALIVGTSSGLLLLHSVDGNAT--EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDW-DLLYENPLEELAEGFD 163 (1325)
Q Consensus 87 g~~La~as~dG~I~lw~~~~~~~--e~vg~~~~~I~~~awSPDG~~LA~~s~dgtV~l~s~~~-d~~~e~~l~~~~~~~~ 163 (1325)
+-.+++|++.|.|.+.|..+... -.-.+..++|++++||-||.+|+.|-++|.|.+|+-+- +++.....+..+
T Consensus 99 ~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap---- 174 (1206)
T KOG2079|consen 99 VVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAP---- 174 (1206)
T ss_pred eeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCc----
Confidence 45689999999999877766322 11123467899999999999999999999999997443 455554433322
Q ss_pred eccCccccCCCCeEEEEEecCCcEEE
Q 000731 164 VHEPELSSSFSFKSPISWRGDGKYFA 189 (1325)
Q Consensus 164 Vs~tqf~~~~~~i~~isWspDG~~lA 189 (1325)
..++..+-|.+++..+.
T Consensus 175 ---------~t~vi~v~~t~~nS~ll 191 (1206)
T KOG2079|consen 175 ---------VTGVIFVGRTSQNSKLL 191 (1206)
T ss_pred ---------cceEEEEEEeCCCcEEE
Confidence 13567788888887554
No 496
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=85.06 E-value=7.2 Score=38.53 Aligned_cols=65 Identities=15% Similarity=0.158 Sum_probs=48.0
Q ss_pred EEEEEEcc---CC-CEEEEEECCCcEEEEeCCCCeEEEeceecCcEEEEEEcCCCCeEEEEeCCccEEEEee
Q 000731 78 ITAFDYLM---EK-EALIVGTSSGLLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTH 145 (1325)
Q Consensus 78 V~~v~~sp---dg-~~La~as~dG~I~lw~~~~~~~e~vg~~~~~I~~~awSPDG~~LA~~s~dgtV~l~s~ 145 (1325)
|.+++++. || ..|++||+|..|++|+-+.-..|+.. .+.|.+++=.+. ..+|.+..+|||-++.+
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e~~~Ei~e--~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~ 70 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDEIVAEITE--TDKVTSLCSLGG-GRFAYALANGTVGVYDR 70 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCcEEEEEec--ccceEEEEEcCC-CEEEEEecCCEEEEEeC
Confidence 44454444 33 58899999999999997764444433 466888877776 67999999999998853
No 497
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=85.05 E-value=2.9 Score=43.28 Aligned_cols=23 Identities=13% Similarity=-0.062 Sum_probs=10.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHH
Q 000731 1053 AQELCEELQALGKPGEAAKIALD 1075 (1325)
Q Consensus 1053 ~~~la~~L~~~~~~~eAa~i~~~ 1075 (1325)
...+|..+...|+|.+|...|.+
T Consensus 61 ~~~lg~~~~~~g~~~~A~~~y~~ 83 (144)
T PRK15359 61 HIALAGTWMMLKEYTTAINFYGH 83 (144)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHH
Confidence 33444444444444444444433
No 498
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=84.86 E-value=7.7 Score=46.82 Aligned_cols=105 Identities=12% Similarity=-0.005 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHc---------------------CCHHHHHHHHHHcCC-----HHHHHHHHhh-
Q 000731 989 MEQVLEAWADHLSDVKCFEDAATTYFCC---------------------SSLEKAMKAYRASGN-----WSGVLTVAGL- 1041 (1325)
Q Consensus 989 ~~~i~~~~a~~L~~~~~~~eAa~~y~~a---------------------g~~ekAl~~y~~ag~-----W~~al~la~~- 1041 (1325)
..+-|..+|.|+.-+++++.|..+|.+| .|...|+++|++|-+ +|.=..+.+.
T Consensus 329 R~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaY 408 (559)
T KOG1155|consen 329 RPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAY 408 (559)
T ss_pred CccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHH
Confidence 4466778999999999999999999988 455889999987753 2211211111
Q ss_pred --cCCCHHHHHHHHHHHHHHHHH--cCChHHHHHHHHHhcCCHHHHHHHHHHhcCHHHH
Q 000731 1042 --LKLGKDEVAKLAQELCEELQA--LGKPGEAAKIALDYCGDVTNGISLLIDARDWEEA 1096 (1325)
Q Consensus 1042 --l~~~~~~~~~l~~~la~~L~~--~~~~~eAa~i~~~yl~d~e~Av~~~~~~~~w~eA 1096 (1325)
++|. .-.-.+..-|..|.- .+....-+++|.+ ++..++||.+|-++-...++
T Consensus 409 eim~Mh--~YaLyYfqkA~~~kPnDsRlw~aLG~CY~k-l~~~~eAiKCykrai~~~dt 464 (559)
T KOG1155|consen 409 EIMKMH--FYALYYFQKALELKPNDSRLWVALGECYEK-LNRLEEAIKCYKRAILLGDT 464 (559)
T ss_pred HHhcch--HHHHHHHHHHHhcCCCchHHHHHHHHHHHH-hccHHHHHHHHHHHHhcccc
Confidence 1111 001112222222221 1223445788888 88888888888776655544
No 499
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.47 E-value=4.7 Score=49.16 Aligned_cols=64 Identities=16% Similarity=0.259 Sum_probs=45.0
Q ss_pred EEEEEccCCCEEEEEECCCcEEEEeCCCCeEE-EeceecCcEEEEEEcCCCCeEEEEeCCccEEEEe
Q 000731 79 TAFDYLMEKEALIVGTSSGLLLLHSVDGNATE-VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMT 144 (1325)
Q Consensus 79 ~~v~~spdg~~La~as~dG~I~lw~~~~~~~e-~vg~~~~~I~~~awSPDG~~LA~~s~dgtV~l~s 144 (1325)
.+++=--+| .+|+||.+|+|+|||.-+.... .+.+....|.-+.-+.||++|. ||.+..+.+++
T Consensus 434 sc~aTT~sG-~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil-~Tc~tyLlLi~ 498 (644)
T KOG2395|consen 434 SCFATTESG-YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWIL-ATCKTYLLLID 498 (644)
T ss_pred ceeeecCCc-eEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEE-EecccEEEEEE
Confidence 344444444 7899999999999998543322 2233457899999999999986 55566777764
No 500
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=84.29 E-value=5.7 Score=47.80 Aligned_cols=111 Identities=12% Similarity=0.038 Sum_probs=63.3
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccc--eeeccccccccccCCCCCCEEEEEEccCCCEEEEEEC----
Q 000731 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERAS--IKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTS---- 95 (1325)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~--~~~~l~~~l~~~~~~~~~~V~~v~~spdg~~La~as~---- 95 (1325)
.+.++++..++ ||+++... |+.+... .+.... +...+-+++......+...+..+.|.|||...++.+.
T Consensus 73 ~p~Gi~~~~~G--lyV~~~~~-i~~~~d~--~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~ 147 (367)
T TIGR02604 73 MVTGLAVAVGG--VYVATPPD-ILFLRDK--DGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLAS 147 (367)
T ss_pred CccceeEecCC--EEEeCCCe-EEEEeCC--CCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCc
Confidence 45677887766 88776554 7766331 111100 0111111111100001244789999999987665442
Q ss_pred ---------------CCcEEEEeCCCCeEEEeceecCcEEEEEEcCCCCeEEEEeCC
Q 000731 96 ---------------SGLLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGF 137 (1325)
Q Consensus 96 ---------------dG~I~lw~~~~~~~e~vg~~~~~I~~~awSPDG~~LA~~s~d 137 (1325)
.|.|.-++++++.++++..--...+.++|+|+|+++++-.++
T Consensus 148 ~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 148 KVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred eeccCCCccCcccccCceEEEEecCCCeEEEEecCcCCCccceECCCCCEEEEccCC
Confidence 156777888888888655322345789999999987654433
Done!