Query 000731
Match_columns 1325
No_of_seqs 450 out of 1722
Neff 7.1
Searched_HMMs 29240
Date Tue Mar 26 16:54:05 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000731.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_502-505//hhsearch_pdb/000731hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mkq_A Coatomer beta'-subunit; 1.0 1 1 389.1 75.5 703 22-1107 15-779 (814)
2 1nr0_A Actin interacting prote 1.0 1 1 330.5 57.1 241 22-309 20-273 (611)
3 2ymu_A WD-40 repeat protein; u 1.0 1 1 316.0 64.4 437 22-552 18-496 (577)
4 3mkq_A Coatomer beta'-subunit; 1.0 1 1 311.6 64.7 688 22-1072 57-805 (814)
5 2ymu_A WD-40 repeat protein; u 1.0 1 1 309.7 55.1 198 67-304 12-209 (577)
6 1nr0_A Actin interacting prote 1.0 1 1 305.5 53.5 199 76-305 19-220 (611)
7 3sfz_A APAF-1, apoptotic pepti 1.0 1 1 300.0 56.2 276 22-348 617-910 (1249)
8 3sfz_A APAF-1, apoptotic pepti 1.0 1 1 294.5 61.0 234 76-345 616-865 (1249)
9 2oaj_A Protein SNI1; WD40 repe 1.0 1 1 284.3 57.0 463 22-552 19-659 (902)
10 2oaj_A Protein SNI1; WD40 repe 1.0 1 1 282.1 44.5 434 75-554 17-605 (902)
No 1
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=1.00 E-value=1 Score=389.08 Aligned_cols=703 Identities=13% Similarity=0.092 Sum_probs=424.7
Q ss_pred CEEEEEEECCCCEEEEEECCCCEEEEECCCCCCCCCCEEECCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCCEEE
Q ss_conf 21579662589889998379728998234433433311201222222235799997899999049998999978995999
Q 000731 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1325)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~V~~i~~spd~~~La~as~dG~I~l 101 (1325)
.+.+++|.+++..+++++.++.|..|+. .++.. +.+ +.++ .+.|.++.|+|+++.|++++.||.|.+
T Consensus 15 ~v~~i~~sp~~~~la~~~~~g~v~iwd~--~~~~~---~~~----~~~~----~~~v~~~~~s~~~~~l~~~~~dg~i~v 81 (814)
T 3mkq_A 15 RVKGIDFHPTEPWVLTTLYSGRVEIWNY--ETQVE---VRS----IQVT----ETPVRAGKFIARKNWIIVGSDDFRIRV 81 (814)
T ss_dssp CEEEEEECSSSSEEEEEETTSEEEEEET--TTTEE---EEE----EECC----SSCEEEEEEEGGGTEEEEEETTSEEEE
T ss_pred CEEEEEECCCCCEEEEEECCCEEEEEEC--CCCCE---EEE----EECC----CCCEEEEEEECCCCEEEEEECCCEEEE
T ss_conf 5689998899998999947998999989--99916---778----7338----996889999689998999928994999
Q ss_pred EECCCCE-EEEECEECCCEEEEEECCCCCEEEEEECCCCEEEEEECCCEEEEEECCCCCCCCEECCCCCCCCCCCEEEEE
Q ss_conf 9689981-999100259699999937899699996896399995037200012103467974001475236899857899
Q 000731 102 HSVDGNA-TEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPIS 180 (1325)
Q Consensus 102 w~~~~~~-~e~vg~~~~gI~~~awSPDGe~LA~~s~d~tI~i~s~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~v~~is 180 (1325)
|+..+++ +.....|.+.|.+++|||||..|++++.|++|.+|+..-...... .+.+|...+.+++
T Consensus 82 w~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~--------------~~~~~~~~v~~~~ 147 (814)
T 3mkq_A 82 FNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQ--------------TFEGHEHFVMCVA 147 (814)
T ss_dssp EETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEE--------------EEECCSSCEEEEE
T ss_pred EECCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEECCCCCEEEE--------------EECCCCCCEEEEE
T ss_conf 98999958799816899789999958999899992899899998999954879--------------9837998688999
Q ss_pred EEC-CCCEEEEEECCCCCCCCCCEEEEEECCCCCEEEEECCC-CCCEEEEEECC--CCCEEEEEECCCCCCCCCEEEEEE
Q ss_conf 906-88579992255445588988999979999366641578-99645899925--999699986289999999499991
Q 000731 181 WRG-DGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELK-AFMGAVLEWMP--SGANIAAVYDRKSENKCPSIVFYE 256 (1325)
Q Consensus 181 Ws~-DG~~lAtvss~d~~~~~~~~irVWd~~~G~l~~t~e~~-~g~~~slawsP--dG~~IAs~~~d~~~~~~~~V~l~e 256 (1325)
|+| ||.+|+ +++ .++.|++|+..++........+ ...+.+++|+| +|.+|++++.+ ..|.+|+
T Consensus 148 ~~p~~~~~l~-~~~------~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d------g~i~~~d 214 (814)
T 3mkq_A 148 FNPKDPSTFA-SGC------LDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDD------LTIKIWD 214 (814)
T ss_dssp EETTEEEEEE-EEE------TTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTT------SEEEEEE
T ss_pred EECCCCCEEE-EEE------CCCEEEEEECCCCCCEEEEECCCCCCEEEEEEEECCCCCEEEEEECC------CEEEEEE
T ss_conf 9769999999-994------88949999899996106983588897799999977999899999389------9799999
Q ss_pred CC-CCEEEEEEECCCCCCCEEEEEECCCCCEEEEEECCCCCCEEEEEEEECCEEEEEEEEEEECCCCEEEEECCCCCCE-
Q ss_conf 79-8047799950588774899999358972589971588774999992077567776999825982999992599927-
Q 000731 257 RN-GLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQ- 334 (1325)
Q Consensus 257 ~n-Gl~~~ef~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~VqlW~~~n~~wyLkqel~~~~~~~~~v~W~p~~~~~- 334 (1325)
.. +.... .+.. +...|..++|+|||.+|++++.|+ .|++|+..++.. .+.+..+......+.|+|++...
T Consensus 215 ~~~~~~~~--~~~~-~~~~v~~~~~~~~~~~l~~~~~dg---~v~vwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~ 286 (814)
T 3mkq_A 215 YQTKSCVA--TLEG-HMSNVSFAVFHPTLPIIISGSEDG---TLKIWNSSTYKV--EKTLNVGLERSWCIATHPTGRKNY 286 (814)
T ss_dssp TTTTEEEE--EEEC-CSSCEEEEEECSSSSEEEEEETTS---CEEEEETTTCSE--EEEECCSSSSEEEEEECTTCGGGE
T ss_pred CCCCCEEE--EECC-CCCCEEEEEECCCCCEEEEEECCC---EEEEEECCCCCE--EEEEECCCCCEEEEEECCCCCCEE
T ss_conf 99991889--9847-888878999859999999990899---699998999947--778406888679999924999509
Q ss_pred EEEEECCCCEEEEEEEEEEE-------ECCCEEEEEEEC-----CEEEEEECC-CCCC----CCCCEEEEE-CCCCCEEE
Q ss_conf 99994499499999999521-------089906999919-----979994257-7679----998301210-18998899
Q 000731 335 LICWTLDGQITTYNFIWTTA-------VMENSTALVIDG-----SKILVTPLS-LSLM----PPPMYLFSL-KFPTAVTE 396 (1325)
Q Consensus 335 L~~~~~~g~~~~~~~~~~~~-------~~d~~~v~viDG-----~~i~lt~l~-~~~v----PpPm~~~~l-~~~~~V~~ 396 (1325)
+.... ++.+.. |... .+..+......+ ..+....++ .+.+ +.......+ .+...+.+
T Consensus 287 ~~~~~-~~~~~~----~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (814)
T 3mkq_A 287 IASGF-DNGFTV----LSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQS 361 (814)
T ss_dssp EEEEE-TTEEEE----EECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSE
T ss_pred EEEEE-CCCEEE----EECCCCCCEEEECCCCCEEEECCCCCCCEEEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCCE
T ss_conf 99990-798799----9767997416777998789977636641124665304655555676201465117887657740
Q ss_pred EEEECCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEEEECCCEEEEEEECCCCCCEEEE
Q ss_conf 99912999999999988980999968999853233587125743024456683789999449849999825998711899
Q 000731 397 MAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFR 476 (1325)
Q Consensus 397 VaFspdg~~~~LAs~s~Dg~I~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~~~~~~~~~ 476 (1325)
++|+|+| +.+++++ ||.+.+|+...... .+.+.+..++|+|++.++|++..+ ..+.+|
T Consensus 362 ~~~spdg--~~la~~~-~~~~~i~~~~~~~~-----------------~~~~~i~~~~~spdg~~la~~~~~--g~v~l~ 419 (814)
T 3mkq_A 362 LAHSPNG--RFVTVVG-DGEYVIYTALAWRN-----------------KAFGKCQDFVWGPDSNSYALIDET--GQIKYY 419 (814)
T ss_dssp EEECTTS--SEEEEEE-TTEEEEEETTTTEE-----------------EEEEECSEEEECTTSSCEEEECTT--CCEEEE
T ss_pred EEECCCC--CEEEEEC-CCEEEEEECCCCCC-----------------CCCCCEEEEEEECCCCEEEEEECC--CCEEEE
T ss_conf 6899999--9899942-98899998745445-----------------679954799994799859999689--839999
Q ss_pred EEECCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEECCCCC---CEEEEEEECCEEEEEECC
Q ss_conf 94126686444113444421144552342224553203432103577089981078887---669999518759998154
Q 000731 477 GATLNEDGLLGFYAQEIELACSEDHVQGLLTCAGWHAKVSTQIPLEGLVIAIAPNNAKK---YSAFLQFHGGKISEYMSR 553 (1325)
Q Consensus 477 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~---~~~~~q~~dG~v~~~~~~ 553 (1325)
..- .+ ..+.+..+.+++ ++ ..++....+|+|..|+..
T Consensus 420 ~~~-~~--------------------------------------~~~~v~~~~~s~-dg~~~~~l~~~~~d~~v~~~d~~ 459 (814)
T 3mkq_A 420 KNF-KE--------------------------------------VTSWSVPMHSAI-DRLFSGALLGVKSDGFVYFFDWD 459 (814)
T ss_dssp ETT-EE--------------------------------------CTTCCCCCSSCC-CEEECSSSEEEEETTEEEEECTT
T ss_pred ECC-CC--------------------------------------CCCEEECCCCCC-CCEECCEEEEEECCCEEEEEECC
T ss_conf 777-77--------------------------------------524397378675-52365469999669989999987
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEEC----CCCCEE-E----------------------CC---
Q ss_conf 45568887788777898777136997237999742599974----897246-4----------------------89---
Q 000731 554 VGLTGGALTHDDASFPSSCPWMNVVSVGTNGPLKPLLFGLD----DGGRLH-V----------------------SG--- 603 (1325)
Q Consensus 554 ~~~~~~~~~~~~~~fp~~c~~~~~~~~~~~~~~~~~~~gL~----~~~~L~-~----------------------~~--- 603 (1325)
.+ .....++..+. .+...++| +.++++=. .....| + ++
T Consensus 460 ~~-------~~~~~~~~~~~---~v~~s~dg--~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 527 (814)
T 3mkq_A 460 NG-------TLVRRIDVNAK---DVIWSDNG--ELVMIVNTNSNGDEASGYTLLFNKDAYLEAANNGNIDDSEGVDEAFD 527 (814)
T ss_dssp TC-------CEEEEESSCEE---EEEECTTS--SEEEEEECCCSSCSCSEEEEEECHHHHHHHHHHTCCBTTTBCTTTEE
T ss_pred CC-------CEEEEEECCCC---EEEECCCC--CEEEEEECCCCCCCCEEEEEEECHHHHHHHHHCCCCCCCCCHHHHEE
T ss_conf 69-------59999735888---79996999--99999986766677428999954688666664168762125022213
Q ss_pred --EEEECCCEEEEEECCCCCCCCEEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf --752048046998516865631189999307819999868633222112223433346766445553333356897799
Q 000731 604 --KIVCNNCSSFSFYSKSAGQAMSHLILATKQNLLFIVDISDILHGELALKYENFTHVGNRRKEENISYINIWERGAKVI 681 (1325)
Q Consensus 604 --~~i~~~~tSf~~~~~~~~~~~~~Ll~tT~~h~l~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~de~~R~vErGs~iV 681 (1325)
..+...+.|....++ .++|+|..+.+.++...+ ...++..+..-.++
T Consensus 528 ~~~~~~~~i~s~~w~~~-------~~i~~t~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~ 576 (814)
T 3mkq_A 528 VLYELSESITSGKWVGD-------VFIFTTATNRLNYFVGGK------------------------TYNLAHYTKEMYLL 576 (814)
T ss_dssp EEEEECSCCSEEEEETT-------EEEEECTTSEEEEEETTE------------------------EEEEEECSSCCEEE
T ss_pred EEEEECCEEEEEEEECC-------EEEEECCCCEEEEEECCE------------------------EEEEEECCCCEEEE
T ss_conf 64576427876598088-------899976887089996986------------------------68999989667999
Q ss_pred EEECCCCCEEEEEECCCCEEECCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHCCC
Q ss_conf 99479971899990898232103303249999999820238999999864220242588546677998728888764289
Q 000731 682 GVLHGDEAAVILQTNRGNLECMYPRKLVLTSIVNALIQGRFRDALVMVRRHRINFNVIVDHCGWQAFLQSASEFVRQVNN 761 (1325)
Q Consensus 682 ~~~p~~~~~vVLQmpRGNLEtI~PR~lvL~~i~~~l~~~~y~~Af~~~R~hRIdlNll~D~~~p~~Fl~~i~~Fv~qv~~ 761 (1325)
...|.. .+++++...|+...+. -+ +..+.
T Consensus 577 ~~~~~~-~~l~~~d~~~~~~~~~-------------------------------------l~-~~~~~------------ 605 (814)
T 3mkq_A 577 GYLARD-NKVYLADREVHVYGYE-------------------------------------IS-LEVLE------------ 605 (814)
T ss_dssp EEEGGG-TEEEEECTTCCEEEEE-------------------------------------CC-HHHHH------------
T ss_pred EEEECC-CEEEEECCCCCEEEEE-------------------------------------EC-CHHHH------------
T ss_conf 998329-9999992888879999-------------------------------------89-09999------------
Q ss_pred CCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
Q ss_conf 64065787312577321124445433457865455689765566658872689999999998512999987224765676
Q 000731 762 LSYITEFVCAINNENITETLYKKFQFLSLPCREEFKDLPAKDFKASECNKVSSVLLAIRKALEEKVPESPSRELCILTTL 841 (1325)
Q Consensus 762 ~~~l~lFls~L~~edvt~t~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~KV~~iC~a~~~~l~~~~~~~~~~~~~ilT~~ 841 (1325)
|-..+.+.| .. .|....+..
T Consensus 606 ------~~~~~~~~~-----------------------------------~~---~a~~~~l~~---------------- 625 (814)
T 3mkq_A 606 ------FQTLTLRGE-----------------------------------IE---EAIENVLPN---------------- 625 (814)
T ss_dssp ------HHHHHHTTC-----------------------------------HH---HHHHHTGGG----------------
T ss_pred ------HHHHHHHCC-----------------------------------HH---HHHHHHHHC----------------
T ss_conf ------969987079-----------------------------------99---999888742----------------
Q ss_pred HCCCC-H-HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCC
Q ss_conf 31898-0-099999999999862015999978899344999999998551579999999711692589999998317921
Q 000731 842 ARSDP-P-ALEEALERIKIIRETELLGSDEPRRMSYPSAEEALKHLLWLADSEAVYEAALGLYDLNLAAIVALNSQRDPK 919 (1325)
Q Consensus 842 v~~~p-p-~le~aL~~i~~l~~~~~~~~~~~~~~~~~~ae~alkyl~~L~d~n~Ly~~ALg~YD~~Lal~VAq~sqkDPk 919 (1325)
-| + .+..+... +.+. ...|+|++ .. +||
T Consensus 626 ---i~~~~~~~~~~~~---l~~~-------------~~~~~a~~-----------------~~-------------~~~- 655 (814)
T 3mkq_A 626 ---VEGKDSLTKIARF---LEGQ-------------EYYEEALN-----------------IS-------------PDQ- 655 (814)
T ss_dssp ---CCCHHHHHHHHHH---HHHT-------------TCHHHHHH-----------------HC-------------CCH-
T ss_pred ---CCCHHHHHHHHHH---HHHC-------------CCHHHHEE-----------------CC-------------CCC-
T ss_conf ---8846789999999---9868-------------98689605-----------------27-------------893-
Q ss_pred CCHHHHHHHHCCCCHHCCCCHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 10486899841990010430878601999999999980999589999999997067589985017947799999999988
Q 000731 920 EFLPYLQELESMPPLLMRYTIDLRLQRFENALKHIVSMGDSYHADCLNLMKKYAQLFPLGLKLITDPAKMEQVLEAWADH 999 (1325)
Q Consensus 920 eYLpfL~~L~~l~~~~~~~~Id~~L~rye~Al~~l~~~g~~~~~eale~~~~~~~ly~~AL~L~~d~~~~~~i~~~ya~~ 999 (1325)
.++|.+ .... +.|+.|++++ ..
T Consensus 656 ---------------~~~f~~----------------------------~l~~-~~~~~A~~~~--------------~~ 677 (814)
T 3mkq_A 656 ---------------DQKFEL----------------------------ALKV-GQLTLARDLL--------------TD 677 (814)
T ss_dssp ---------------HHHHHH----------------------------HHHH-TCHHHHHHHH--------------TT
T ss_pred ---------------CHHEEH----------------------------HHHC-CCHHHHHHHH--------------HH
T ss_conf ---------------142502----------------------------1450-9999999999--------------86
Q ss_pred HHCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCC
Q ss_conf 73113679999999976999999999999099999999983318997899999999999999859958999999995099
Q 000731 1000 LSDVKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCGD 1079 (1325)
Q Consensus 1000 L~~~~~~~eAa~~y~~ag~~~kAl~~y~~ag~W~~al~lA~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~yl~d 1079 (1325)
+.+...|+++|.++...++++.|.+||.++++|+.+..+....+ +. +....+++.....+++..|..+|++ +||
T Consensus 678 ~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~-~~----~~~~~~~~~a~~~~~~~~A~~~~~~-~g~ 751 (814)
T 3mkq_A 678 ESAEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFN-NK----EGLVTLAKDAETTGKFNLAFNAYWI-AGD 751 (814)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTT-CH----HHHHHHHHHHHHTTCHHHHHHHHHH-HTC
T ss_pred HCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHCC-CH----HHHHHHHHHHHHCCCHHHHHHHHHH-CCC
T ss_conf 17676899999999984998999999987027135589987729-99----9999999999985866799999988-099
Q ss_pred HHHHHHHHHHHCCHHHHHHHHHHCCCCH
Q ss_conf 9999999997149999999998518711
Q 000731 1080 VTNGISLLIDARDWEEALRVAFMHRRED 1107 (1325)
Q Consensus 1080 ~e~Ai~~~i~~~~w~eA~rla~~~~~~d 1107 (1325)
+++|+++|++.++|++|+.+|..|...+
T Consensus 752 ~~~a~~~~~~~~~~~~A~~lA~~~~~~~ 779 (814)
T 3mkq_A 752 IQGAKDLLIKSQRFSEAAFLGSTYGLGD 779 (814)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHCCCH
T ss_conf 9999999998699478999998709975
No 2
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=1.00 E-value=1 Score=330.46 Aligned_cols=241 Identities=11% Similarity=0.129 Sum_probs=188.2
Q ss_pred CEEEEEEECCCCEEEEEECCCCEEEEECCCCCCCCCCEEECCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCCEEE
Q ss_conf 21579662589889998379728998234433433311201222222235799997899999049998999978995999
Q 000731 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1325)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~V~~i~~spd~~~La~as~dG~I~l 101 (1325)
.+...+|+++++.|++++++ .++.|++ .++.. ..+ +.+| .+.|.+++|+|||+.||+++.||+|++
T Consensus 20 ~~~~~~~spdg~~l~~~~~~-~v~l~~~--~~~~~---~~~----~~~h----~~~v~~~~~spdg~~lasg~~d~~v~l 85 (611)
T 1nr0_A 20 TAVVLGNTPAGDKIQYCNGT-SVYTVPV--GSLTD---TEI----YTEH----SHQTTVAKTSPSGYYCASGDVHGNVRI 85 (611)
T ss_dssp CCCCCEECTTSSEEEEEETT-EEEEEET--TCSSC---CEE----ECCC----SSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred CEEEEEECCCCCEEEECCCC-EEEEECC--CCCCC---CEE----ECCC----CCCEEEEEECCCCCEEEEEECCCCEEE
T ss_conf 23697667999979967999-7999457--87242---737----6589----986599999999968999948997899
Q ss_pred EECCCC--EE-EEECEECCCEEEEEECCCCCEEEEEECC----CCEEEEEECCCEEEEEECCCCCCCCEECCCCCCCCCC
Q ss_conf 968998--19-9910025969999993789969999689----6399995037200012103467974001475236899
Q 000731 102 HSVDGN--AT-EVVGRVEGGVRFISPSPDGDLLGVTTGF----GQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFS 174 (1325)
Q Consensus 102 w~~~~~--~~-e~vg~~~~gI~~~awSPDGe~LA~~s~d----~tI~i~s~~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~ 174 (1325)
|+..++ .. ..+..|.+.|.+++|||||+.||+++.+ ++|.+ |+. +.... .+.+|..
T Consensus 86 Wd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~----wd~--~~~~~-----------~l~gh~~ 148 (611)
T 1nr0_A 86 WDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFL----FDT--GTSNG-----------NLTGQAR 148 (611)
T ss_dssp EESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEE----TTT--CCBCB-----------CCCCCSS
T ss_pred EECCCCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCCEEEEEE----EEC--CCCCC-----------EECCCCC
T ss_conf 489898415667622557844899989999979999899773669999----638--99763-----------2547889
Q ss_pred CEEEEEEECCCCE-EEEEECCCCCCCCCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCCCCCCEEE
Q ss_conf 8578999068857-999225544558898899997999936664157899645899925999699986289999999499
Q 000731 175 FKSPISWRGDGKY-FATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIV 253 (1325)
Q Consensus 175 ~v~~isWs~DG~~-lAtvss~d~~~~~~~~irVWd~~~G~l~~t~e~~~g~~~slawsPdG~~IAs~~~d~~~~~~~~V~ 253 (1325)
.+.+++|+|||.+ |+ +++ .|++|++|+..++++..++..|.+.+.+++|+|+|++||+++.| ..|+
T Consensus 149 ~v~~v~f~p~~~~~l~-s~s------~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D------~~i~ 215 (611)
T 1nr0_A 149 AMNSVDFKPSRPFRII-SGS------DDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGD------GTIV 215 (611)
T ss_dssp CEEEEEECSSSSCEEE-EEE------TTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETT------SCEE
T ss_pred CCEEEEECCCCCEEEE-EEE------CCCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECC------CCEE
T ss_conf 8369998899982999-992------89809999799975766520025716999997999989999899------9199
Q ss_pred EEE-CCCCEEEEEEEC----CCCCCCEEEEEECCCCCEEEEEECCCCCCEEEEEEEECCEE
Q ss_conf 991-798047799950----58877489999935897258997158877499999207756
Q 000731 254 FYE-RNGLERSSFDIN----EQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHW 309 (1325)
Q Consensus 254 l~e-~nGl~~~ef~l~----~~~~~~V~~laWSpDg~~LA~~~~d~~~~~VqlW~~~n~~w 309 (1325)
+|+ .+|.....+.-. ..+...|.+++|+|||+.||+++.|+ +|++|+..+...
T Consensus 216 lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~---~v~lWd~~~~~~ 273 (611)
T 1nr0_A 216 LYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADK---TIKIWNVATLKV 273 (611)
T ss_dssp EEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTS---EEEEEETTTTEE
T ss_pred EEECCCCCEEEEECCCCCCCCCCCCCEEEEEECCCCCEEEEEECCC---EEEEEECCCCCE
T ss_conf 9889998286651366432356678789999979999999990898---099996888701
No 3
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=1.00 E-value=1 Score=316.04 Aligned_cols=437 Identities=14% Similarity=0.140 Sum_probs=309.3
Q ss_pred CEEEEEEECCCCEEEEEECCCCEEEEECCCCCCCCCCEEECCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCCEEE
Q ss_conf 21579662589889998379728998234433433311201222222235799997899999049998999978995999
Q 000731 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1325)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~V~~i~~spd~~~La~as~dG~I~l 101 (1325)
.+.+++|.+|+..|++++.|+.|..||. . ++. +.+ +.+| .+.|.+++|+||++.|++++.||+|++
T Consensus 18 ~V~~~a~spdg~~las~~~d~~v~iWd~--~-~~~---~~~----l~gh----~~~V~~l~fspdg~~las~~~d~~i~v 83 (577)
T 2ymu_A 18 SVRGVAFSPDGQTIASASDDKTVKLWNR--N-GQL---LQT----LTGH----SSSVWGVAFSPDGQTIASASDDKTVKL 83 (577)
T ss_dssp CEEEEEECTTSSCEEEEETTSEEEEECT--T-SCE---EEE----EECC----SSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred CEEEEEECCCCCEEEEEECCCEEEEEEC--C-CCE---EEE----EECC----CCCEEEEEECCCCCEEEEEECCCEEEE
T ss_conf 5799999899899999938998999979--9-978---999----9689----899899999899999999969897999
Q ss_pred EECCCCEEEEECEECCCEEEEEECCCCCEEEEEECCCCEEEEEECCCEEEEEECCCCC--------CCCEEC--------
Q ss_conf 9689981999100259699999937899699996896399995037200012103467--------974001--------
Q 000731 102 HSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELA--------EGFDVH-------- 165 (1325)
Q Consensus 102 w~~~~~~~e~vg~~~~gI~~~awSPDGe~LA~~s~d~tI~i~s~~~d~~~e~~l~~~~--------~~~~Vs-------- 165 (1325)
|+..+..+..+..|.+.|.+++|||||+.|++++.|+++.+|............+... +...+.
T Consensus 84 Wd~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 163 (577)
T 2ymu_A 84 WNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTV 163 (577)
T ss_dssp EETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSEE
T ss_pred EECCCCEEEEEECCCCCEEEEEECCCCCEEEEECCCCCEEECCCCCCEEEECCCCCCCEEEEEEECCCCCCEECCCCCCE
T ss_conf 98999789999789998899999899998999807983352023552001104777743555420377632002555310
Q ss_pred ---------CCCCCCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCE
Q ss_conf ---------47523689985789990688579992255445588988999979999366641578996458999259996
Q 000731 166 ---------EPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGAN 236 (1325)
Q Consensus 166 ---------~tqf~~~~~~v~~isWs~DG~~lAtvss~d~~~~~~~~irVWd~~~G~l~~t~e~~~g~~~slawsPdG~~ 236 (1325)
......+...+..+.|+|||.+++ +++ .++.|++|+. ++++..+...+.+.+.+++|+|+|++
T Consensus 164 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~------~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~s~dg~~ 235 (577)
T 2ymu_A 164 KLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIA-SAS------DDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQT 235 (577)
T ss_dssp EEECTTSCEEEEEECCSSCEEEEEECTTSSCEE-EEE------TTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSC
T ss_pred ECCCCCEEEEEECCCCCCCEEEEEECCCCCEEE-EEC------CCCEEEEEEC-CCCEEEEEECCCCCEEEEEECCCCCE
T ss_conf 000000000000268776356654169977899-985------9998999949-99689999468898899999799999
Q ss_pred EEEEECCCCCCCCCEEEEEECCCCEEEEEEECCCCCCCEEEEEECCCCCEEEEEECCCCCCEEEEEEEECCEEEEEEEEE
Q ss_conf 99986289999999499991798047799950588774899999358972589971588774999992077567776999
Q 000731 237 IAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIR 316 (1325)
Q Consensus 237 IAs~~~d~~~~~~~~V~l~e~nGl~~~ef~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~VqlW~~~n~~wyLkqel~ 316 (1325)
|++++.+ ..|.+|+.++..... +.. +...|..++|+||++.|++++.|+ +|++|+.... +.+.+.
T Consensus 236 l~~~~~d------~~i~~w~~~~~~~~~--~~~-~~~~v~~v~~~~d~~~l~~~~~d~---~i~~w~~~~~---~~~~~~ 300 (577)
T 2ymu_A 236 IASASDD------KTVKLWNRNGQLLQT--LTG-HSSSVNGVAFRPDGQTIASASDDK---TVKLWNRNGQ---LLQTLT 300 (577)
T ss_dssp EEEEETT------SCEEEECTTSCEEEE--ECC-CSSCEEEEEECTTSSEEEEEETTS---CEEEEETTSC---EEEEEC
T ss_pred EEEEECC------CEEEEEECCCCEEEE--EEC-CCCCEEEEEECCCCCEEEEEECCC---EEEEEECCCC---EEEEEE
T ss_conf 9999189------989999599979999--806-889879999968999999995999---7999948995---899970
Q ss_pred EECCCCEEEEECCCCCCEEEEEECCCCEEEEEE--------------EEEEE--ECCCEEEEEEECCEEEEEECCCCCCC
Q ss_conf 825982999992599927999944994999999--------------99521--08990699991997999425776799
Q 000731 317 YLRRDGIRFMWHPTKPLQLICWTLDGQITTYNF--------------IWTTA--VMENSTALVIDGSKILVTPLSLSLMP 380 (1325)
Q Consensus 317 ~~~~~~~~v~W~p~~~~~L~~~~~~g~~~~~~~--------------~~~~~--~~d~~~v~viDG~~i~lt~l~~~~vP 380 (1325)
.+......+.|+|++.. +..++.+|.+..++. ++.++ |++..++...++..+.+|+....
T Consensus 301 ~h~~~v~~~~~~~~~~~-l~t~~~d~~i~~w~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~~--- 376 (577)
T 2ymu_A 301 GHSSSVWGVAFSPDGQT-IASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ--- 376 (577)
T ss_dssp CCSSCEEEEEECTTSSE-EEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTCC---
T ss_pred CCCCCEEEEEECCCCCE-EEEEECCCEEEEEECCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEECCCCC---
T ss_conf 68897699999999999-99996999599996999725787478897799999899999999969998999908997---
Q ss_pred CCCEEEEE-CCCCCEEEEEEECCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEEEECCC
Q ss_conf 98301210-18998899999129999999999889809999689998532335871257430244566837899994498
Q 000731 381 PPMYLFSL-KFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSH 459 (1325)
Q Consensus 381 pPm~~~~l-~~~~~V~~VaFspdg~~~~LAs~s~Dg~I~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~ 459 (1325)
....+ .|...|.+++|+|+| +.||+++.|++|++|+.... ....+ ..+...+..++|+|++
T Consensus 377 ---~~~~~~~~~~~v~~~~~s~dg--~~l~~~~~d~~v~~~~~~~~-~~~~~------------~~~~~~v~~~~~s~d~ 438 (577)
T 2ymu_A 377 ---LLQTLTGHSSSVRGVAFSPDG--QTIASASDDKTVKLWNRNGQ-LLQTL------------TGHSSSVWGVAFSPDD 438 (577)
T ss_dssp ---EEEEEECCSSCEEEEEECTTS--SCEEEEETTSEEEEECTTCC-EEEEE------------ECCSSCEEEEEECTTS
T ss_pred ---EEEEECCCCCCEEEEEECCCC--CEEEEEECCCEEEEEECCCC-EEEEE------------CCCCCCEEEEEECCCC
T ss_conf ---899852788974899998999--99999949998999969997-89896------------2889975799998999
Q ss_pred EEEEEEECCCCCCEEEEEEECCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEECCCCCCEEE
Q ss_conf 49999825998711899941266864441134444211445523422245532034321035770899810788876699
Q 000731 460 LLLSVSHHGPRHSNYFRGATLNEDGLLGFYAQEIELACSEDHVQGLLTCAGWHAKVSTQIPLEGLVIAIAPNNAKKYSAF 539 (1325)
Q Consensus 460 ~lla~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~ 539 (1325)
.++++++.+ ..+.+|... + . .+.....+.+.|..+.++| ++..++
T Consensus 439 ~~l~~~~~d--~~v~~w~~~--~-----------------~-------------~~~~~~~~~~~v~~~~~sp-d~~~la 483 (577)
T 2ymu_A 439 QTIASASDD--KTVKLWNRN--G-----------------Q-------------LLQTLTGHSSSVRGVAFSP-DGQTIA 483 (577)
T ss_dssp SEEEEEETT--SEEEEEETT--S-----------------C-------------EEEEEECCSSCEEEEEECT-TSCEEE
T ss_pred CEEEEECCC--CEEEEEECC--C-----------------C-------------EEEEECCCCCCEEEEEECC-CCCEEE
T ss_conf 999999399--989999799--9-----------------8-------------8999727899778999969-999999
Q ss_pred EEEECCEEEEEEC
Q ss_conf 9951875999815
Q 000731 540 LQFHGGKISEYMS 552 (1325)
Q Consensus 540 ~q~~dG~v~~~~~ 552 (1325)
....||+|..|+.
T Consensus 484 s~~~d~~i~iw~~ 496 (577)
T 2ymu_A 484 SASDDKTVKLWNR 496 (577)
T ss_dssp EEETTSEEEEEET
T ss_pred EEECCCEEEEECC
T ss_conf 9919897999939
No 4
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=1.00 E-value=1 Score=311.62 Aligned_cols=688 Identities=13% Similarity=0.067 Sum_probs=391.1
Q ss_pred CEEEEEEECCCCEEEEEECCCCEEEEECCCCCCCCCCEEECCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCCEEE
Q ss_conf 21579662589889998379728998234433433311201222222235799997899999049998999978995999
Q 000731 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1325)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~V~~i~~spd~~~La~as~dG~I~l 101 (1325)
.+.+++|.+++..+++++.++.|..|+. .+++. +.+ +.++ .+.|.+++|+|+++.|++++.||+|.+
T Consensus 57 ~v~~~~~s~~~~~l~~~~~dg~i~vw~~--~~~~~---~~~----~~~~----~~~v~~~~~s~~~~~l~~~~~dg~i~v 123 (814)
T 3mkq_A 57 PVRAGKFIARKNWIIVGSDDFRIRVFNY--NTGEK---VVD----FEAH----PDYIRSIAVHPTKPYVLSGSDDLTVKL 123 (814)
T ss_dssp CEEEEEEEGGGTEEEEEETTSEEEEEET--TTCCE---EEE----EECC----SSCEEEEEECSSSSEEEEEETTSEEEE
T ss_pred CEEEEEEECCCCEEEEEECCCEEEEEEC--CCCCE---EEE----EECC----CCCEEEEEEECCCCEEEEECCCCEEEE
T ss_conf 6889999689998999928994999989--99958---799----8168----997899999589998999928998999
Q ss_pred EECCCC-EE-EEECEECCCEEEEEECC-CCCEEEEEECCCCEEEEEE-CCCEEEEEECCCCCCCCEECCCCCCCCCCCEE
Q ss_conf 968998-19-99100259699999937-8996999968963999950-37200012103467974001475236899857
Q 000731 102 HSVDGN-AT-EVVGRVEGGVRFISPSP-DGDLLGVTTGFGQILVMTH-DWDLLYENPLEELAEGFDVHEPELSSSFSFKS 177 (1325)
Q Consensus 102 w~~~~~-~~-e~vg~~~~gI~~~awSP-DGe~LA~~s~d~tI~i~s~-~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~v~ 177 (1325)
|+.+++ .. .....|...|.+++||| ||..|++++.|++|.+|+. ...+...... .+...+.
T Consensus 124 w~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~---------------~~~~~v~ 188 (814)
T 3mkq_A 124 WNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTT---------------GQERGVN 188 (814)
T ss_dssp EEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEEC---------------CCTTCCC
T ss_pred EECCCCCEEEEEECCCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCCEEEEEC---------------CCCCCEE
T ss_conf 9899995487998379986889999769999999994889499998999961069835---------------8889779
Q ss_pred EEEEEC--CCCEEEEEECCCCCCCCCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEE
Q ss_conf 899906--885799922554455889889999799993666415789964589992599969998628999999949999
Q 000731 178 PISWRG--DGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFY 255 (1325)
Q Consensus 178 ~isWs~--DG~~lAtvss~d~~~~~~~~irVWd~~~G~l~~t~e~~~g~~~slawsPdG~~IAs~~~d~~~~~~~~V~l~ 255 (1325)
.++|+| ||.+++ +++ .++.|++|+..++....+...+.+.+.+++|+|+|++|++++.+ +.|.+|
T Consensus 189 ~~~~~~~~~~~~l~-~~~------~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~v~vw 255 (814)
T 3mkq_A 189 YVDYYPLPDKPYMI-TAS------DDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSED------GTLKIW 255 (814)
T ss_dssp EEEECCSTTCCEEE-EEC------TTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETT------SCEEEE
T ss_pred EEEEEECCCCCEEE-EEE------CCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECC------CEEEEE
T ss_conf 99999779998999-993------89979999999991889984788887899985999999999089------969999
Q ss_pred ECCC-CEEEEEEECCCCCCCEEEEEECCCCC--EEEEEECCCCCCEEEEEEEECCEEEEEEEEEEECCCCEEEEECCCCC
Q ss_conf 1798-04779995058877489999935897--25899715887749999920775677769998259829999925999
Q 000731 256 ERNG-LERSSFDINEQIDSTVELLKWNCMSD--LLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKP 332 (1325)
Q Consensus 256 e~nG-l~~~ef~l~~~~~~~V~~laWSpDg~--~LA~~~~d~~~~~VqlW~~~n~~wyLkqel~~~~~~~~~v~W~p~~~ 332 (1325)
+.+. .... .+..+ ...+..++|+|+|. +++++..+ .+.+|+..+... . +.|+|++.
T Consensus 256 d~~~~~~~~--~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~----~----------~~~~~~g~ 314 (814)
T 3mkq_A 256 NSSTYKVEK--TLNVG-LERSWCIATHPTGRKNYIASGFDN----GFTVLSLGNDEP----T----------LSLDPVGK 314 (814)
T ss_dssp ETTTCSEEE--EECCS-SSSEEEEEECTTCGGGEEEEEETT----EEEEEECSCCSC----C----------EEECSSSE
T ss_pred ECCCCCEEE--EEECC-CCCEEEEEECCCCCCEEEEEEECC----CEEEEECCCCCC----E----------EEECCCCC
T ss_conf 899994777--84068-886799999249995099999079----879997679974----1----------67779987
Q ss_pred CEEEEEECCC-------------------C-------------EEEEEEEEEEEECCCEEEEEEECCEEEEEECCCCCCC
Q ss_conf 2799994499-------------------4-------------9999999952108990699991997999425776799
Q 000731 333 LQLICWTLDG-------------------Q-------------ITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMP 380 (1325)
Q Consensus 333 ~~L~~~~~~g-------------------~-------------~~~~~~~~~~~~~d~~~v~viDG~~i~lt~l~~~~vP 380 (1325)
. +.....+. . .......|+ |++. .+++..+..+.+|.+..+.
T Consensus 315 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s--pdg~-~la~~~~~~~~i~~~~~~~-- 388 (814)
T 3mkq_A 315 L-VWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHS--PNGR-FVTVVGDGEYVIYTALAWR-- 388 (814)
T ss_dssp E-EEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEEC--TTSS-EEEEEETTEEEEEETTTTE--
T ss_pred E-EEECCCCCCCEEEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCCEEEEC--CCCC-EEEEECCCEEEEEECCCCC--
T ss_conf 8-99776366411246653046555556762014651178876577406899--9999-8999429889999874544--
Q ss_pred CCCEEEEECCCCCEEEEEEECCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEEEECCC-
Q ss_conf 9830121018998899999129999999999889809999689998532335871257430244566837899994498-
Q 000731 381 PPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSH- 459 (1325)
Q Consensus 381 pPm~~~~l~~~~~V~~VaFspdg~~~~LAs~s~Dg~I~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~- 459 (1325)
..+.+.+.+++|+|+| +.+|+++.+|+|++|+.-. + +...+..+.|+|++
T Consensus 389 -------~~~~~~i~~~~~spdg--~~la~~~~~g~v~l~~~~~--------~------------~~~~v~~~~~s~dg~ 439 (814)
T 3mkq_A 389 -------NKAFGKCQDFVWGPDS--NSYALIDETGQIKYYKNFK--------E------------VTSWSVPMHSAIDRL 439 (814)
T ss_dssp -------EEEEEECSEEEECTTS--SCEEEECTTCCEEEEETTE--------E------------CTTCCCCCSSCCCEE
T ss_pred -------CCCCCCEEEEEEECCC--CEEEEEECCCCEEEEECCC--------C------------CCCEEECCCCCCCCE
T ss_conf -------5679954799994799--8599996898399997777--------7------------524397378675523
Q ss_pred --EEEEEEECCCCCCEEEEEEECCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEECCCCCCE
Q ss_conf --499998259987118999412668644411344442114455234222455320343210357708998107888766
Q 000731 460 --LLLSVSHHGPRHSNYFRGATLNEDGLLGFYAQEIELACSEDHVQGLLTCAGWHAKVSTQIPLEGLVIAIAPNNAKKYS 537 (1325)
Q Consensus 460 --~lla~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~ 537 (1325)
..++++..+ ..+.+|.+.- + . ..... .+....+.++| ++..
T Consensus 440 ~~~~l~~~~~d--~~v~~~d~~~-~-----------------------------~--~~~~~--~~~~~~v~~s~-dg~~ 482 (814)
T 3mkq_A 440 FSGALLGVKSD--GFVYFFDWDN-G-----------------------------T--LVRRI--DVNAKDVIWSD-NGEL 482 (814)
T ss_dssp ECSSSEEEEET--TEEEEECTTT-C-----------------------------C--EEEEE--SSCEEEEEECT-TSSE
T ss_pred ECCEEEEEECC--CEEEEEECCC-C-----------------------------C--EEEEE--ECCCCEEEECC-CCCE
T ss_conf 65469999669--9899999876-9-----------------------------5--99997--35888799969-9999
Q ss_pred EEEE------EECCEEEEEECCC-C---CCCCC---CCCCCCCCCCCCCCE-EEEEECCCCCCCCEEEEECCCCCEEECC
Q ss_conf 9999------5187599981544-5---56888---778877789877713-6997237999742599974897246489
Q 000731 538 AFLQ------FHGGKISEYMSRV-G---LTGGA---LTHDDASFPSSCPWM-NVVSVGTNGPLKPLLFGLDDGGRLHVSG 603 (1325)
Q Consensus 538 ~~~q------~~dG~v~~~~~~~-~---~~~~~---~~~~~~~fp~~c~~~-~~~~~~~~~~~~~~~~gL~~~~~L~~~~ 603 (1325)
+++. ..++.++.+.... . +.... .++..-.|...|..- .+....|.+ .+.+--++.+++
T Consensus 483 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~w~~---~~~i~~t~~~~~---- 555 (814)
T 3mkq_A 483 VMIVNTNSNGDEASGYTLLFNKDAYLEAANNGNIDDSEGVDEAFDVLYELSESITSGKWVG---DVFIFTTATNRL---- 555 (814)
T ss_dssp EEEEECCCSSCSCSEEEEEECHHHHHHHHHHTCCBTTTBCTTTEEEEEEECSCCSEEEEET---TEEEEECTTSEE----
T ss_pred EEEEECCCCCCCCEEEEEEECHHHHHHHHHCCCCCCCCCHHHHEEEEEEECCEEEEEEEEC---CEEEEECCCCEE----
T ss_conf 9999867666774289999546886666641687621250222136457642787659808---889997688708----
Q ss_pred EEEECCCEEEEEECCCCCCCCEEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf 75204804699851686563118999930781999986863322211222343334676644555333335689779999
Q 000731 604 KIVCNNCSSFSFYSKSAGQAMSHLILATKQNLLFIVDISDILHGELALKYENFTHVGNRRKEENISYINIWERGAKVIGV 683 (1325)
Q Consensus 604 ~~i~~~~tSf~~~~~~~~~~~~~Ll~tT~~h~l~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~de~~R~vErGs~iV~~ 683 (1325)
.+.+..+ ...+.+..+.+.. ++-.-.|.+++.+
T Consensus 556 --------~~~~~~~-------~~~~~~~~~~~~~--------------------------------~~~~~~~~~l~~~ 588 (814)
T 3mkq_A 556 --------NYFVGGK-------TYNLAHYTKEMYL--------------------------------LGYLARDNKVYLA 588 (814)
T ss_dssp --------EEEETTE-------EEEEEECSSCCEE--------------------------------EEEEGGGTEEEEE
T ss_pred --------EEEECCE-------EEEEEECCCCEEE--------------------------------EEEEECCCEEEEE
T ss_conf --------9996986-------6899998966799--------------------------------9998329999999
Q ss_pred ECCCCCEEEEEECCCCEEECCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHCCCCC
Q ss_conf 47997189999089823210330324999999982023899999986422024258854667799872888876428964
Q 000731 684 LHGDEAAVILQTNRGNLECMYPRKLVLTSIVNALIQGRFRDALVMVRRHRINFNVIVDHCGWQAFLQSASEFVRQVNNLS 763 (1325)
Q Consensus 684 ~p~~~~~vVLQmpRGNLEtI~PR~lvL~~i~~~l~~~~y~~Af~~~R~hRIdlNll~D~~~p~~Fl~~i~~Fv~qv~~~~ 763 (1325)
-... .-.+++++-.-+ .....+..++|.+|.. .++..|++
T Consensus 589 d~~~-~~~~~~l~~~~~-----------~~~~~~~~~~~~~a~~--------------------------~~l~~i~~-- 628 (814)
T 3mkq_A 589 DREV-HVYGYEISLEVL-----------EFQTLTLRGEIEEAIE--------------------------NVLPNVEG-- 628 (814)
T ss_dssp CTTC-CEEEEECCHHHH-----------HHHHHHHTTCHHHHHH--------------------------HTGGGCCC--
T ss_pred CCCC-CEEEEEECCHHH-----------HHHHHHHHCCHHHHHH--------------------------HHHHCCCC--
T ss_conf 2888-879999890999-----------9969987079999998--------------------------88742884--
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHC
Q ss_conf 06578731257732112444543345786545568976556665887268999999999851299998722476567631
Q 000731 764 YITEFVCAINNENITETLYKKFQFLSLPCREEFKDLPAKDFKASECNKVSSVLLAIRKALEEKVPESPSRELCILTTLAR 843 (1325)
Q Consensus 764 ~l~lFls~L~~edvt~t~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~KV~~iC~a~~~~l~~~~~~~~~~~~~ilT~~v~ 843 (1325)
. +.+ +.+...|++.
T Consensus 629 ----------------------------~-----------------~~~----~~~~~~l~~~----------------- 642 (814)
T 3mkq_A 629 ----------------------------K-----------------DSL----TKIARFLEGQ----------------- 642 (814)
T ss_dssp ----------------------------H-----------------HHH----HHHHHHHHHT-----------------
T ss_pred ----------------------------H-----------------HHH----HHHHHHHHHC-----------------
T ss_conf ----------------------------6-----------------789----9999999868-----------------
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHH
Q ss_conf 89800999999999998620159999788993449999999985515799999997116925899999983179211048
Q 000731 844 SDPPALEEALERIKIIRETELLGSDEPRRMSYPSAEEALKHLLWLADSEAVYEAALGLYDLNLAAIVALNSQRDPKEFLP 923 (1325)
Q Consensus 844 ~~pp~le~aL~~i~~l~~~~~~~~~~~~~~~~~~ae~alkyl~~L~d~n~Ly~~ALg~YD~~Lal~VAq~sqkDPkeYLp 923 (1325)
.- .+.||+... + ...-|+.||.+-+|+.|+-+|+.. .+|
T Consensus 643 -~~--~~~a~~~~~----------------~----------------~~~~f~~~l~~~~~~~A~~~~~~~-~~~----- 681 (814)
T 3mkq_A 643 -EY--YEEALNISP----------------D----------------QDQKFELALKVGQLTLARDLLTDE-SAE----- 681 (814)
T ss_dssp -TC--HHHHHHHCC----------------C----------------HHHHHHHHHHHTCHHHHHHHHTTC-CCH-----
T ss_pred -CC--HHHHEECCC----------------C----------------CCHHEEHHHHCCCHHHHHHHHHHH-CCH-----
T ss_conf -98--689605278----------------9----------------314250214509999999999861-767-----
Q ss_pred HHHHHHCCCCHHCCCCHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCHHHHHHHC---CCCHHHHHHHHHHHHHH
Q ss_conf 689984199001043087860199999999998099958999999999706758998501---79477999999999887
Q 000731 924 YLQELESMPPLLMRYTIDLRLQRFENALKHIVSMGDSYHADCLNLMKKYAQLFPLGLKLI---TDPAKMEQVLEAWADHL 1000 (1325)
Q Consensus 924 fL~~L~~l~~~~~~~~Id~~L~rye~Al~~l~~~g~~~~~eale~~~~~~~ly~~AL~L~---~d~~~~~~i~~~ya~~L 1000 (1325)
..|+.+.+...+.|+ ++.|...+.+. +.|..+..|+ .+.+.. ...|+-.
T Consensus 682 ---------------------~~W~~la~~al~~~~--~~~A~~~y~~~-~d~~~l~~l~~~~~~~~~~----~~~~~~a 733 (814)
T 3mkq_A 682 ---------------------MKWRALGDASLQRFN--FKLAIEAFTNA-HDLESLFLLHSSFNNKEGL----VTLAKDA 733 (814)
T ss_dssp ---------------------HHHHHHHHHHHHTTC--HHHHHHHHHHH-TCHHHHHHHHHHTTCHHHH----HHHHHHH
T ss_pred ---------------------HHHHHHHHHHHHCCC--HHHHHHHHHHC-CCHHHHHHHHHHCCCHHHH----HHHHHHH
T ss_conf ---------------------689999999998499--89999999870-2713558998772999999----9999999
Q ss_pred HCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 311367999999997699999999999909999999998331899789999999999999985995899999
Q 000731 1001 SDVKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKI 1072 (1325)
Q Consensus 1001 ~~~~~~~eAa~~y~~ag~~~kAl~~y~~ag~W~~al~lA~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i 1072 (1325)
+..+++..|..+|.++|++++|+++|..++.|.+|+.+|+.++...+.+..+....++.|.+.+++..|..+
T Consensus 734 ~~~~~~~~A~~~~~~~g~~~~a~~~~~~~~~~~~A~~lA~~~~~~~~~i~~~~~~~~~~L~~~~~~~~a~~l 805 (814)
T 3mkq_A 734 ETTGKFNLAFNAYWIAGDIQGAKDLLIKSQRFSEAAFLGSTYGLGDNEVNDIVTKWKENLILNGKNTVSERV 805 (814)
T ss_dssp HHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTCHHHHTTB
T ss_pred HHCCCHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf 985866799999988099999999999869947899999870997578899999999998761646689863
No 5
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=1.00 E-value=1 Score=309.74 Aligned_cols=198 Identities=17% Similarity=0.220 Sum_probs=126.2
Q ss_pred CCCCCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEECEECCCEEEEEECCCCCEEEEEECCCCEEEEEEC
Q ss_conf 22235799997899999049998999978995999968998199910025969999993789969999689639999503
Q 000731 67 IEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHD 146 (1325)
Q Consensus 67 l~~~~~~~~~~V~~i~~spd~~~La~as~dG~I~lw~~~~~~~e~vg~~~~gI~~~awSPDGe~LA~~s~d~tI~i~s~~ 146 (1325)
|.+| .+.|.+++|+|||+.||+++.||+|++|+.++..+..+..|.+.|++++|||||++||+++.|++|.+|+..
T Consensus 12 L~GH----~~~V~~~a~spdg~~las~~~d~~v~iWd~~~~~~~~l~gh~~~V~~l~fspdg~~las~~~d~~i~vWd~~ 87 (577)
T 2ymu_A 12 LEAH----SSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN 87 (577)
T ss_dssp ECCC----SSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred ECCC----CCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECC
T ss_conf 8789----985799999899899999938998999979997899996898998999998999999999698979999899
Q ss_pred CCEEEEEECCCCCCCCEECCCCCCCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCEEEEEECCCCCEEEEECCCCCCEE
Q ss_conf 72000121034679740014752368998578999068857999225544558898899997999936664157899645
Q 000731 147 WDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGA 226 (1325)
Q Consensus 147 ~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~v~~isWs~DG~~lAtvss~d~~~~~~~~irVWd~~~G~l~~t~e~~~g~~~ 226 (1325)
...+.... +|...+.+++|+|||++++ +++ .++.+++|+. .+........+...+.
T Consensus 88 ~~~~~~~~----------------~~~~~v~~~~~s~d~~~l~-~~~------~d~~~~~~~~-~~~~~~~~~~~~~~v~ 143 (577)
T 2ymu_A 88 GQLLQTLT----------------GHSSSVRGVAFSPDGQTIA-SAS------DDKTVKLWNR-NGQLLQTLTGHSSSVW 143 (577)
T ss_dssp SCEEEEEC----------------CCSSCEEEEEECTTSSEEE-EEE------TTSCEEEEET-TCCEEEEECCCSSCEE
T ss_pred CCEEEEEE----------------CCCCCEEEEEECCCCCEEE-EEC------CCCCEEECCC-CCCEEEECCCCCCCEE
T ss_conf 97899997----------------8999889999989999899-980------7983352023-5520011047777435
Q ss_pred EEEECCCCCEEEEEECCCCCCCCCEEEEEECCCCEEEEEEECCCCCCCEEEEEECCCCCEEEEEECCCCCCEEEEEEE
Q ss_conf 899925999699986289999999499991798047799950588774899999358972589971588774999992
Q 000731 227 VLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFF 304 (1325)
Q Consensus 227 slawsPdG~~IAs~~~d~~~~~~~~V~l~e~nGl~~~ef~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~VqlW~~ 304 (1325)
.+.|+|++..+++...+ ..+.+|..++...... . .+...|..+.|+|||+.|++++.|+ .|++|+.
T Consensus 144 ~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~--~-~~~~~v~~~~~~~~~~~l~~~~~d~---~v~~w~~ 209 (577)
T 2ymu_A 144 GVAFSPDGQTIASASDD------KTVKLWNRNGQLLQTL--T-GHSSSVWGVAFSPDGQTIASASDDK---TVKLWNR 209 (577)
T ss_dssp EEEECTTSSCEEEEETT------SEEEEECTTSCEEEEE--E-CCSSCEEEEEECTTSSCEEEEETTS---EEEEECT
T ss_pred EEEEECCCCCCEECCCC------CCEECCCCCEEEEEEC--C-CCCCCEEEEEECCCCCEEEEECCCC---EEEEEEC
T ss_conf 55420377632002555------3100000000000002--6-8776356654169977899985999---8999949
No 6
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=1.00 E-value=1 Score=305.53 Aligned_cols=199 Identities=13% Similarity=0.103 Sum_probs=75.3
Q ss_pred CCEEEEEECCCCCEEEEEECCCCEEEEECCCC-EEEEECEECCCEEEEEECCCCCEEEEEECCCCEEEEEEC-CCEEEEE
Q ss_conf 97899999049998999978995999968998-199910025969999993789969999689639999503-7200012
Q 000731 76 DSITAFDYLMEKEALIVGTSSGLLLLHSVDGN-ATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHD-WDLLYEN 153 (1325)
Q Consensus 76 ~~V~~i~~spd~~~La~as~dG~I~lw~~~~~-~~e~vg~~~~gI~~~awSPDGe~LA~~s~d~tI~i~s~~-~d~~~e~ 153 (1325)
+.+..++|+|||+.|++++ +++|.+|+..++ ....+..|.+.|++++|||||++||+++.|++|++|+.. .......
T Consensus 19 g~~~~~~~spdg~~l~~~~-~~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~ 97 (611)
T 1nr0_A 19 GTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKT 97 (611)
T ss_dssp TCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEE
T ss_pred CCEEEEEECCCCCEEEECC-CCEEEEECCCCCCCCEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCEEEE
T ss_conf 8236976679999799679-997999457872427376589986599999999968999948997899489898415667
Q ss_pred ECCCCCCCCEECCCCCCCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCEEEEEECCCCCEEEEECCCCCCEEEEEECCC
Q ss_conf 10346797400147523689985789990688579992255445588988999979999366641578996458999259
Q 000731 154 PLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPS 233 (1325)
Q Consensus 154 ~l~~~~~~~~Vs~tqf~~~~~~v~~isWs~DG~~lAtvss~d~~~~~~~~irVWd~~~G~l~~t~e~~~g~~~slawsPd 233 (1325)
.+++|...+.+++|+|||+++| +++.+. ....+|++|+ .|....+..+|.+.+.+++|+|+
T Consensus 98 --------------~~~~~~~~v~~v~fs~dg~~l~-~~~~~~--~~~~~v~~wd--~~~~~~~l~gh~~~v~~v~f~p~ 158 (611)
T 1nr0_A 98 --------------TIPVFSGPVKDISWDSESKRIA-AVGEGR--ERFGHVFLFD--TGTSNGNLTGQARAMNSVDFKPS 158 (611)
T ss_dssp --------------EEECSSSCEEEEEECTTSCEEE-EEECCS--SCSEEEEETT--TCCBCBCCCCCSSCEEEEEECSS
T ss_pred --------------EECCCCCCEEEEEECCCCCEEE-EEECCC--CCEEEEEEEE--CCCCCCEECCCCCCCEEEEECCC
T ss_conf --------------6225578448999899999799-998997--7366999963--89976325478898369998899
Q ss_pred CC-EEEEEECCCCCCCCCEEEEEECCCCEEEEEEECCCCCCCEEEEEECCCCCEEEEEECCCCCCEEEEEEEE
Q ss_conf 99-6999862899999994999917980477999505887748999993589725899715887749999920
Q 000731 234 GA-NIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFS 305 (1325)
Q Consensus 234 G~-~IAs~~~d~~~~~~~~V~l~e~nGl~~~ef~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~VqlW~~~ 305 (1325)
|. .||+++.| ..|++|+....+. ...+.. +...|.+++|||||++||+++.|+ +|++|+..
T Consensus 159 ~~~~l~s~s~D------~~v~lwd~~~~~~-~~~l~~-H~~~V~~v~fspdg~~las~s~D~---~i~lwd~~ 220 (611)
T 1nr0_A 159 RPFRIISGSDD------NTVAIFEGPPFKF-KSTFGE-HTKFVHSVRYNPDGSLFASTGGDG---TIVLYNGV 220 (611)
T ss_dssp SSCEEEEEETT------SCEEEEETTTBEE-EEEECC-CSSCEEEEEECTTSSEEEEEETTS---CEEEEETT
T ss_pred CCEEEEEEECC------CEEEEEECCCCEE-EEEECC-CCCCEEEEEECCCCCEEEEEECCC---CEEEEECC
T ss_conf 98299999289------8099997999757-665200-257169999979999899998999---19998899
No 7
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=1.00 E-value=1 Score=300.00 Aligned_cols=276 Identities=9% Similarity=0.084 Sum_probs=208.0
Q ss_pred CEEEEEEECCCCEEEEEECCCCEEEEECCCCCCCCCCEEECCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCCEEE
Q ss_conf 21579662589889998379728998234433433311201222222235799997899999049998999978995999
Q 000731 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1325)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~V~~i~~spd~~~La~as~dG~I~l 101 (1325)
.+.+++|.+++..+++++.++.|..|+. .+++. +.+ +.+| .+.|.+++|+|+++.|++++.||+|.+
T Consensus 617 ~v~~~~~s~~~~~l~s~~~d~~i~vw~~--~~~~~---~~~----~~~h----~~~v~~~~~s~~~~~l~s~~~d~~v~v 683 (1249)
T 3sfz_A 617 AVYHACFSQDGQRIASCGADKTLQVFKA--ETGEK---LLD----IKAH----EDEVLCCAFSSDDSYIATCSADKKVKI 683 (1249)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEET--TTCCE---EEE----ECCC----SSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred CEEEEEECCCCCEEEEEECCCEEEEEEC--CCCCE---EEE----ECCC----CCCEEEEEEECCCCEEEEEECCCEEEE
T ss_conf 4899998799998999948894999998--99978---887----6067----777899999269998999818995999
Q ss_pred EECCCCEE-EEECEECCCEEEEEECC--CCCEEEEEECCCCEEEEEE-CCCEEEEEECCCCCCCCEECCCCCCCCCCCEE
Q ss_conf 96899819-99100259699999937--8996999968963999950-37200012103467974001475236899857
Q 000731 102 HSVDGNAT-EVVGRVEGGVRFISPSP--DGDLLGVTTGFGQILVMTH-DWDLLYENPLEELAEGFDVHEPELSSSFSFKS 177 (1325)
Q Consensus 102 w~~~~~~~-e~vg~~~~gI~~~awSP--DGe~LA~~s~d~tI~i~s~-~~d~~~e~~l~~~~~~~~Vs~tqf~~~~~~v~ 177 (1325)
|+..+++. ..+..|.+.|.+++|+| ++.++++++.|++|.+|+. .+..+.. +.+|.+.+.
T Consensus 684 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~----------------~~~h~~~v~ 747 (1249)
T 3sfz_A 684 WDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNT----------------MFGHTNSVN 747 (1249)
T ss_dssp EETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEE----------------ECCCSSCEE
T ss_pred EECCCCCEEEEECCCCCCEEEEEEECCCCCEEEEEEECCCEEEEEECCCCCHHHE----------------ECCCCCCEE
T ss_conf 8779993689995899737999984089965999980897099998999634220----------------127779788
Q ss_pred EEEEECCCCEEEEEECCCCCCCCCCEEEEEECCCCCEEEEECC-------------CCCCEEEEEECCCCCEEEEEECCC
Q ss_conf 8999068857999225544558898899997999936664157-------------899645899925999699986289
Q 000731 178 PISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSEL-------------KAFMGAVLEWMPSGANIAAVYDRK 244 (1325)
Q Consensus 178 ~isWs~DG~~lAtvss~d~~~~~~~~irVWd~~~G~l~~t~e~-------------~~g~~~slawsPdG~~IAs~~~d~ 244 (1325)
+++|+|||.+++ +++ .++.|++|+..++........ ....+.+++|+|+|+.+++++.
T Consensus 748 ~~~~sp~~~~l~-s~s------~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~-- 818 (1249)
T 3sfz_A 748 HCRFSPDDELLA-SCS------ADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAK-- 818 (1249)
T ss_dssp EEEECSSTTEEE-EEE------SSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEET--
T ss_pred EEEEECCCCEEE-EEE------CCCEEEEEECCCCCCCCEECCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEECC--
T ss_conf 999925999899-997------89859999688886553020232102467764456501799999789988999758--
Q ss_pred CCCCCCEEEEEECC-CCEEEEEEECCCCCCCEEEEEECCCCCEEEEEECCCCCCEEEEEEEECCEEEEEEEEEEECCCCE
Q ss_conf 99999949999179-80477999505887748999993589725899715887749999920775677769998259829
Q 000731 245 SENKCPSIVFYERN-GLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGI 323 (1325)
Q Consensus 245 ~~~~~~~V~l~e~n-Gl~~~ef~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~VqlW~~~n~~wyLkqel~~~~~~~~ 323 (1325)
..|.+|+.. +..... +...+...|..++|+|++..+++++.++ .|++|+..+... ...+..+.....
T Consensus 819 -----~~v~~~d~~~~~~~~~--~~~~~~~~v~~~~~sp~~~~l~~~~~dg---~v~vwd~~~~~~--~~~~~~h~~~v~ 886 (1249)
T 3sfz_A 819 -----NKVLLFDIHTSGLLAE--IHTGHHSTIQYCDFSPYDHLAVIALSQY---CVELWNIDSRLK--VADCRGHLSWVH 886 (1249)
T ss_dssp -----TEEEEEETTTCCEEEE--EECSSSSCCCEEEECSSTTEEEEECSSS---CEEEEETTTTEE--EEEECCCSSCEE
T ss_pred -----CCEEEEEECCCCCEEE--ECCCCCCCEEEEEECCCCCEEEEEECCC---EEEEEECCCCCE--EEECCCCCCCEE
T ss_conf -----9599999568972357--7478777607999827888899994798---699998678956--532278766568
Q ss_pred EEEECCCCCCEEEEEECCCCEEEEE
Q ss_conf 9999259992799994499499999
Q 000731 324 RFMWHPTKPLQLICWTLDGQITTYN 348 (1325)
Q Consensus 324 ~v~W~p~~~~~L~~~~~~g~~~~~~ 348 (1325)
.+.|+|++.. +..++.+|.+..++
T Consensus 887 ~v~~spdg~~-l~s~s~dg~v~vw~ 910 (1249)
T 3sfz_A 887 GVMFSPDGSS-FLTASDDQTIRVWE 910 (1249)
T ss_dssp EEEECTTSSE-EEEEETTSCEEEEE
T ss_pred EEEECCCCCE-EEEEECCCEEEEEE
T ss_conf 9999899998-99995897289887
No 8
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=1.00 E-value=1 Score=294.46 Aligned_cols=234 Identities=10% Similarity=0.086 Sum_probs=108.2
Q ss_pred CCEEEEEECCCCCEEEEEECCCCEEEEECCCCE-EEEECEECCCEEEEEECCCCCEEEEEECCCCEEEEEE-CCCEEEEE
Q ss_conf 978999990499989999789959999689981-9991002596999999378996999968963999950-37200012
Q 000731 76 DSITAFDYLMEKEALIVGTSSGLLLLHSVDGNA-TEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTH-DWDLLYEN 153 (1325)
Q Consensus 76 ~~V~~i~~spd~~~La~as~dG~I~lw~~~~~~-~e~vg~~~~gI~~~awSPDGe~LA~~s~d~tI~i~s~-~~d~~~e~ 153 (1325)
+.|.+++|+|+++.|++++.||+|++|+..++. +..+..|.+.|.+++|||||++||+++.|++|.+|+. .+..+..
T Consensus 616 ~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~- 694 (1249)
T 3sfz_A 616 DAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHT- 694 (1249)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE-
T ss_pred CCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEE-
T ss_conf 6489999879999899994889499999899978887606777789999926999899981899599987799936899-
Q ss_pred ECCCCCCCCEECCCCCCCCCCCEEEEEEECCC--CEEEEEECCCCCCCCCCEEEEEECCCCCEEEEECCCCCCEEEEEEC
Q ss_conf 10346797400147523689985789990688--5799922554455889889999799993666415789964589992
Q 000731 154 PLEELAEGFDVHEPELSSSFSFKSPISWRGDG--KYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWM 231 (1325)
Q Consensus 154 ~l~~~~~~~~Vs~tqf~~~~~~v~~isWs~DG--~~lAtvss~d~~~~~~~~irVWd~~~G~l~~t~e~~~g~~~slaws 231 (1325)
|.+|...+.+++|+|++ .+++ +++ .++.|++||..+|....+..+|.+.+.+++|+
T Consensus 695 ---------------~~~~~~~v~~~~~~~~~~~~~l~-sg~------~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~s 752 (1249)
T 3sfz_A 695 ---------------YDEHSEQVNCCHFTNKSNHLLLA-TGS------NDFFLKLWDLNQKECRNTMFGHTNSVNHCRFS 752 (1249)
T ss_dssp ---------------EECCSSCEEEEEECSSSSCCEEE-EEE------TTSCEEEEETTSSSEEEEECCCSSCEEEEEEC
T ss_pred ---------------ECCCCCCEEEEEEECCCCCEEEE-EEE------CCCEEEEEECCCCCHHHEECCCCCCEEEEEEE
T ss_conf ---------------95899737999984089965999-980------89709999899963422012777978899992
Q ss_pred CCCCEEEEEECCCCCCCCCEEEEEEC-CCCEEEEEEECC----------CCCCCEEEEEECCCCCEEEEEECCCCCCEEE
Q ss_conf 59996999862899999994999917-980477999505----------8877489999935897258997158877499
Q 000731 232 PSGANIAAVYDRKSENKCPSIVFYER-NGLERSSFDINE----------QIDSTVELLKWNCMSDLLAAVVRFEEYDSVK 300 (1325)
Q Consensus 232 PdG~~IAs~~~d~~~~~~~~V~l~e~-nGl~~~ef~l~~----------~~~~~V~~laWSpDg~~LA~~~~d~~~~~Vq 300 (1325)
|+|+++++++.| +.|.+|+. ++.....+.... .....+..++|+|||+.+++++.+ .+.
T Consensus 753 p~~~~l~s~s~d------g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~----~v~ 822 (1249)
T 3sfz_A 753 PDDELLASCSAD------GTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKN----KVL 822 (1249)
T ss_dssp SSTTEEEEEESS------SEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETT----EEE
T ss_pred CCCCEEEEEECC------CEEEEEECCCCCCCCEECCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEECCC----CEE
T ss_conf 599989999789------8599996888865530202321024677644565017999997899889997589----599
Q ss_pred EEEEECCEEEEEEEEEEECCCC-EEEEECCCCCCEEEEEECCCCEE
Q ss_conf 9992077567776999825982-99999259992799994499499
Q 000731 301 ICFFSNNHWYLKYEIRYLRRDG-IRFMWHPTKPLQLICWTLDGQIT 345 (1325)
Q Consensus 301 lW~~~n~~wyLkqel~~~~~~~-~~v~W~p~~~~~L~~~~~~g~~~ 345 (1325)
+|+..+... ...+....... ..+.|+|++.. +.+++.+|.+.
T Consensus 823 ~~d~~~~~~--~~~~~~~~~~~v~~~~~sp~~~~-l~~~~~dg~v~ 865 (1249)
T 3sfz_A 823 LFDIHTSGL--LAEIHTGHHSTIQYCDFSPYDHL-AVIALSQYCVE 865 (1249)
T ss_dssp EEETTTCCE--EEEEECSSSSCCCEEEECSSTTE-EEEECSSSCEE
T ss_pred EEEECCCCC--EEEECCCCCCCEEEEEECCCCCE-EEEEECCCEEE
T ss_conf 999568972--35774787776079998278888-99994798699
No 9
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=284.26 Aligned_cols=463 Identities=13% Similarity=0.102 Sum_probs=280.0
Q ss_pred CEEEEEEECCCCEEEEEECCCCEEEEECCCCCCCCCCEEECCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCCEEE
Q ss_conf 21579662589889998379728998234433433311201222222235799997899999049998999978995999
Q 000731 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1325)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~V~~i~~spd~~~La~as~dG~I~l 101 (1325)
.+.+++|++++..|++++.|+.|+.|+. ...+. ... +. + ...|.+++|+| ++.|++++.||+|++
T Consensus 19 ~V~~lafspdg~~lAsgs~Dg~I~lw~~--~~~~~---~~~----~~-~----~~~V~~l~fsp-g~~L~S~s~D~~v~l 83 (902)
T 2oaj_A 19 KPIAAAFDFTQNLLAIATVTGEVHIYGQ--QQVEV---VIK----LE-D----RSAIKEMRFVK-GIYLVVINAKDTVYV 83 (902)
T ss_dssp CEEEEEEETTTTEEEEEETTSEEEEECS--TTCEE---EEE----CS-S----CCCEEEEEEET-TTEEEEEETTCEEEE
T ss_pred CCEEEEECCCCCEEEEEECCCEEEEEEC--CCCEE---EEE----CC-C----CCCEEEEEECC-CCEEEEEECCCEEEE
T ss_conf 8489999799998999929798999968--99479---998----68-9----99779999908-988999989595999
Q ss_pred EECCCCEE-EEECEECCCEEEEEECCCCCEEEEEECCCCEEEEEECCCEEEEEECCCCCCCCEECC-CCCCCCCCCEEEE
Q ss_conf 96899819-991002596999999378996999968963999950372000121034679740014-7523689985789
Q 000731 102 HSVDGNAT-EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHE-PELSSSFSFKSPI 179 (1325)
Q Consensus 102 w~~~~~~~-e~vg~~~~gI~~~awSPDGe~LA~~s~d~tI~i~s~~~d~~~e~~l~~~~~~~~Vs~-tqf~~~~~~v~~i 179 (1325)
|+..+++. ..+. +.+.|++++|+|||++|++++.||+|.+|+..........+.... .. ..+++|...+.++
T Consensus 84 Wd~~~~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~-----~~~~~~~~h~~~V~sl 157 (902)
T 2oaj_A 84 LSLYSQKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQ-----KSSFFPAARLSPIVSI 157 (902)
T ss_dssp EETTTCSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHH-----HHHTCSSSCCCCCCEE
T ss_pred EECCCCCEEEEEC-CCCCEEEEEECCCCCEEEEECCCCCEEEEECCCCCCCCCEECCCC-----CCCCCCCCCCCCEEEE
T ss_conf 9899996899974-899879999879999899994999299999999962650304321-----0002544578973899
Q ss_pred EEECCC-CEEEEEECCCCCCCCCCEEEEEECCCCCEEEEECCC------------------CCCEEEEEECCCCCEEEEE
Q ss_conf 990688-579992255445588988999979999366641578------------------9964589992599969998
Q 000731 180 SWRGDG-KYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELK------------------AFMGAVLEWMPSGANIAAV 240 (1325)
Q Consensus 180 sWs~DG-~~lAtvss~d~~~~~~~~irVWd~~~G~l~~t~e~~------------------~g~~~slawsPdG~~IAs~ 240 (1325)
+|+|++ ..++ +++ .++.| +||..+++...+...+ .+.+.+++|+|+|++||++
T Consensus 158 ~~sp~~~~~l~-~g~------~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasg 229 (902)
T 2oaj_A 158 QWNPRDIGTVL-ISY------EYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITI 229 (902)
T ss_dssp EEETTEEEEEE-EEC------SSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEE
T ss_pred EECCCCCCEEE-EEE------CCCCE-EEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEE
T ss_conf 97669999899-991------89849-99877896579983355776777654433234567776899985999999999
Q ss_pred ECCCCCCCCCEEEEEEC-CCCEEEEEEEC---CC------------CCCCEEEEEEC----CCC-CEEEEEECCCC--CC
Q ss_conf 62899999994999917-98047799950---58------------87748999993----589-72589971588--77
Q 000731 241 YDRKSENKCPSIVFYER-NGLERSSFDIN---EQ------------IDSTVELLKWN----CMS-DLLAAVVRFEE--YD 297 (1325)
Q Consensus 241 ~~d~~~~~~~~V~l~e~-nGl~~~ef~l~---~~------------~~~~V~~laWS----pDg-~~LA~~~~d~~--~~ 297 (1325)
+.| ..|++|+. +|.......+. .+ +...|.+++|+ ||+ .+|++++.+.. ..
T Consensus 230 s~D------g~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~ 303 (902)
T 2oaj_A 230 HED------NSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQ 303 (902)
T ss_dssp ETT------CCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCC
T ss_pred ECC------CEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEECCCCCCCCCC
T ss_conf 899------93999987899688888501234578777678888555677457999734999887899968877778885
Q ss_pred EEEEEEEECCE-------------E---EEEEEEEEECCCC-EEEEECCC---------CCCEEEEEECCCCEEEEEE--
Q ss_conf 49999920775-------------6---7776999825982-99999259---------9927999944994999999--
Q 000731 298 SVKICFFSNNH-------------W---YLKYEIRYLRRDG-IRFMWHPT---------KPLQLICWTLDGQITTYNF-- 349 (1325)
Q Consensus 298 ~VqlW~~~n~~-------------w---yLkqel~~~~~~~-~~v~W~p~---------~~~~L~~~~~~g~~~~~~~-- 349 (1325)
.+++|+.+..- | ...+.+.+..... ..+.+.|+ .+..+.+.+.+|++..+++
T Consensus 304 ~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~ 383 (902)
T 2oaj_A 304 SLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPS 383 (902)
T ss_dssp CEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTT
T ss_pred EEEEEECCCCCCCCCCCHHHHHHHHCCCCCEEEEECCCCCCEEEEEECCCCCCCCCCCCCCEEEEEECCCCCEEEEECCC
T ss_conf 28999547898755542556546641745227874189995479999778898867787850699991798489997899
Q ss_pred ------------------------EEE------------------------------EE--ECCCEEEEEEECCEEEEEE
Q ss_conf ------------------------995------------------------------21--0899069999199799942
Q 000731 350 ------------------------IWT------------------------------TA--VMENSTALVIDGSKILVTP 373 (1325)
Q Consensus 350 ------------------------~~~------------------------------~~--~~d~~~v~viDG~~i~lt~ 373 (1325)
.+. ++ |++..++....+.+|++|+
T Consensus 384 g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd 463 (902)
T 2oaj_A 384 GIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYD 463 (902)
T ss_dssp CCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCEEEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEE
T ss_conf 98556555689852235897248999974999998888604699975457857787533366675899965898389997
Q ss_pred CCCCCCCCC-CEEEEE------CCCCCEEEEEEECCCCCCEEEEEECCCCEEEEECCCCCCCC--------C--------
Q ss_conf 577679998-301210------18998899999129999999999889809999689998532--------3--------
Q 000731 374 LSLSLMPPP-MYLFSL------KFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLE--------D-------- 430 (1325)
Q Consensus 374 l~~~~vPpP-m~~~~l------~~~~~V~~VaFspdg~~~~LAs~s~Dg~I~lw~~~~~~~~~--------~-------- 430 (1325)
+.......+ .....+ .|...|++|+|+||| +.||+++.||+|++|++.+..... .
T Consensus 464 ~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg--~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (902)
T 2oaj_A 464 ASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAET--LELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRF 541 (902)
T ss_dssp SSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTT--TEEEEEETTSCEEEEEEEECCC---------------CCSC
T ss_pred CCCCCCCCCCEEEEECHHHCCCCCCCCEEEEEECCCC--CEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCCCEEEEEC
T ss_conf 8776456773677501541377888764699963899--96999945857999992486555754557786651134551
Q ss_pred --CCCC----------------CEEEEEECCCCCCCCEEEEEEECCCEEEEEEECCCCCCEEEEEEECCCCCCCCCHHHH
Q ss_conf --3587----------------1257430244566837899994498499998259987118999412668644411344
Q 000731 431 --LEGT----------------EFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGATLNEDGLLGFYAQE 492 (1325)
Q Consensus 431 --~~g~----------------~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 492 (1325)
..++ ++.... ....+.+.+..++|+||| +||+++.+ .++.+|++. +
T Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~l~~h~~~V~svafSpdG-~lAsgs~D--~tv~lwd~~--~---------- 605 (902)
T 2oaj_A 542 SLNNTNGVLVDVRDRAPTGVRQGFMPST-AVHANKGKTSAINNSNIG-FVGIAYAA--GSLMLIDRR--G---------- 605 (902)
T ss_dssp CGGGSSCSEEECGGGCCTTCSEEEEEEE-EECCCSCSEEEEEECBTS-EEEEEETT--SEEEEEETT--T----------
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCEEE-EEECCCCCEEEEEECCCC-EEEEEECC--CCEEEEECC--C----------
T ss_conf 3467965432242368988777601469-998688867799964876-89999589--769999888--9----------
Q ss_pred HHHHCCCCCCCCCCCCCCCCEEEEEEC-CCCCCEEEEEEC-----CCC---CCEEEEEEECCEEEEEEC
Q ss_conf 442114455234222455320343210-357708998107-----888---766999951875999815
Q 000731 493 IELACSEDHVQGLLTCAGWHAKVSTQI-PLEGLVIAIAPN-----NAK---KYSAFLQFHGGKISEYMS 552 (1325)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~i~~~-----~~~---~~~~~~q~~dG~v~~~~~ 552 (1325)
..+ + ......... .+.+.|.++.++ + | +..++..+.||+|..|+.
T Consensus 606 -------~~~---~----~~~~~~~~~~gh~~~V~sv~Fs~~~~~~-Dg~~~~~l~sgs~D~tv~~wd~ 659 (902)
T 2oaj_A 606 -------PAI---I----YMENIREISGAQSACVTCIEFVIMEYGD-DGYSSILMVCGTDMGEVITYKI 659 (902)
T ss_dssp -------TEE---E----EEEEGGGTCSSCCCCEEEEEEEEEECTT-SSSEEEEEEEEETTSEEEEEEE
T ss_pred -------CEE---E----EEEEHHHHCCCCCCCEEEEEEEEEECCC-CCCCCEEEEEEECCCCEEEEEE
T ss_conf -------839---9----9702467264666613999999984178-9876338999956873999999
No 10
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=282.13 Aligned_cols=434 Identities=12% Similarity=0.061 Sum_probs=272.8
Q ss_pred CCCEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEECEECCCEEEEEECCCCCEEEEEECCCCEEEEEE-CCCEEEEE
Q ss_conf 99789999904999899997899599996899819991002596999999378996999968963999950-37200012
Q 000731 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTH-DWDLLYEN 153 (1325)
Q Consensus 75 ~~~V~~i~~spd~~~La~as~dG~I~lw~~~~~~~e~vg~~~~gI~~~awSPDGe~LA~~s~d~tI~i~s~-~~d~~~e~ 153 (1325)
.+.|.+++|+|+++.||+++.||+|++|+..+.+......|...|.+++||| |++|++++.|++|.+|+. ....+...
T Consensus 17 ~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~ 95 (902)
T 2oaj_A 17 SSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTV 95 (902)
T ss_dssp SSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECSSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEE
T ss_pred CCCCEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEECCCCCCEEEEEECC-CCEEEEEECCCEEEEEECCCCCEEEEE
T ss_conf 9984899997999989999297989999689947999868999779999908-988999989595999989999689997
Q ss_pred ECCCCCCCCEECCCCCCCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCEEEEEECCCCCEE-----------EEECCCC
Q ss_conf 10346797400147523689985789990688579992255445588988999979999366-----------6415789
Q 000731 154 PLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQ-----------ASSELKA 222 (1325)
Q Consensus 154 ~l~~~~~~~~Vs~tqf~~~~~~v~~isWs~DG~~lAtvss~d~~~~~~~~irVWd~~~G~l~-----------~t~e~~~ 222 (1325)
. +...+.+++|+|||++++ +++ .++.|++||..++.+. .....|.
T Consensus 96 ~-----------------~~~~V~~v~~sp~g~~l~-sgs------~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~ 151 (902)
T 2oaj_A 96 F-----------------VPGKITSIDTDASLDWML-IGL------QNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARL 151 (902)
T ss_dssp E-----------------CSSCEEEEECCTTCSEEE-EEE------TTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCC
T ss_pred C-----------------CCCCEEEEEECCCCCEEE-EEC------CCCCEEEEECCCCCCCCCEECCCCCCCCCCCCCC
T ss_conf 4-----------------899879999879999899-994------9992999999999626503043210002544578
Q ss_pred CCEEEEEECCC-CCEEEEEECCCCCCCCCEEEEEECCC-CEEEEEEEC---------------CCCCCCEEEEEECCCCC
Q ss_conf 96458999259-99699986289999999499991798-047799950---------------58877489999935897
Q 000731 223 FMGAVLEWMPS-GANIAAVYDRKSENKCPSIVFYERNG-LERSSFDIN---------------EQIDSTVELLKWNCMSD 285 (1325)
Q Consensus 223 g~~~slawsPd-G~~IAs~~~d~~~~~~~~V~l~e~nG-l~~~ef~l~---------------~~~~~~V~~laWSpDg~ 285 (1325)
+.+.+++|+|+ +..+++++.+ ..| +|+... .....|... ..+...|.+++|+|||.
T Consensus 152 ~~V~sl~~sp~~~~~l~~g~~d------g~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~ 224 (902)
T 2oaj_A 152 SPIVSIQWNPRDIGTVLISYEY------VTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSL 224 (902)
T ss_dssp CCCCEEEEETTEEEEEEEECSS------CEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSS
T ss_pred CCEEEEEECCCCCCEEEEEECC------CCE-EEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCC
T ss_conf 9738999766999989999189------849-998778965799833557767776544332345677768999859999
Q ss_pred EEEEEECCCCCCEEEEEEEECCEEEEEEEEE---EE------------CCCC-EEEEECC----CCCCEEEEEECC----
Q ss_conf 2589971588774999992077567776999---82------------5982-9999925----999279999449----
Q 000731 286 LLAAVVRFEEYDSVKICFFSNNHWYLKYEIR---YL------------RRDG-IRFMWHP----TKPLQLICWTLD---- 341 (1325)
Q Consensus 286 ~LA~~~~d~~~~~VqlW~~~n~~wyLkqel~---~~------------~~~~-~~v~W~p----~~~~~L~~~~~~---- 341 (1325)
.||+++.|+ +|++|+..+......+.+. .+ .... ..+.|+| +++..+..+..+
T Consensus 225 ~lasgs~Dg---~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~ 301 (902)
T 2oaj_A 225 HIITIHEDN---SLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGD 301 (902)
T ss_dssp EEEEEETTC---CEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSS
T ss_pred EEEEEECCC---EEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEECCCCCCCC
T ss_conf 999998999---39999878996888885012345787776788885556774579997349998878999688777788
Q ss_pred -CCEEEEEEE-------------------------EE---------EE--E----------CCCEEEEEEECCEEEEEEC
Q ss_conf -949999999-------------------------95---------21--0----------8990699991997999425
Q 000731 342 -GQITTYNFI-------------------------WT---------TA--V----------MENSTALVIDGSKILVTPL 374 (1325)
Q Consensus 342 -g~~~~~~~~-------------------------~~---------~~--~----------~d~~~v~viDG~~i~lt~l 374 (1325)
+.+..+++. +. .. + +...+++...+..+.+|++
T Consensus 302 ~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~ 381 (902)
T 2oaj_A 302 NQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLY 381 (902)
T ss_dssp CCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEET
T ss_pred CCEEEEEECCCCCCCCCCCHHHHHHHHCCCCCEEEEECCCCCCEEEEEECCCCCCCCCCCCCCEEEEEECCCCCEEEEEC
T ss_conf 85289995478987555425565466417452278741899954799997788988677878506999917984899978
Q ss_pred CCC-C-CC------------CCCEE----------------------EEE-CCCCCEEEEEEECCCCCCEEEEEECCCCE
Q ss_conf 776-7-99------------98301----------------------210-18998899999129999999999889809
Q 000731 375 SLS-L-MP------------PPMYL----------------------FSL-KFPTAVTEMAFYSKSSKNCLAAILSDGCL 417 (1325)
Q Consensus 375 ~~~-~-vP------------pPm~~----------------------~~l-~~~~~V~~VaFspdg~~~~LAs~s~Dg~I 417 (1325)
... . .+ |+... ..+ +|...+.+|+|+|+| +.||+++.||+|
T Consensus 382 ~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg--~~laSgs~DgtV 459 (902)
T 2oaj_A 382 PSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYG--TAFITGHSNGSV 459 (902)
T ss_dssp TTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEE--EEEEEEETTSEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC--CEEEEECCCCCE
T ss_conf 999855655568985223589724899997499999888860469997545785778753336667--589996589838
Q ss_pred EEEECCCCCCCCCCCCCCEEEEE--ECCCCCCCCEEEEEEECCCEEEEEEECCCCCCEEEEEEECCCC-------CCCC-
Q ss_conf 99968999853233587125743--0244566837899994498499998259987118999412668-------6444-
Q 000731 418 CVVDLPAPDMLEDLEGTEFVVEA--CISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGATLNED-------GLLG- 487 (1325)
Q Consensus 418 ~lw~~~~~~~~~~~~g~~~~~~~--~~~~~~~~~v~~l~~~~d~~lla~~~~~~~~~~~~~~~~~~~~-------~~~~- 487 (1325)
++|+..+.. ... ...+.... .....+...+..++|+||+++||+++.+ .++.+|.+.-... ....
T Consensus 460 rlWd~~~g~-~~~--~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~D--gtV~lwd~~~~~~~~~~~~~~~~~~ 534 (902)
T 2oaj_A 460 RIYDASHGD-IQD--NASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIET--GDVVLFKYEVNQFYSVENRPESGDL 534 (902)
T ss_dssp EEEESSCCT-TTT--TBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETT--SCEEEEEEEECCC------------
T ss_pred EEEECCCCC-CCC--CCEEEEECHHHCCCCCCCCEEEEEECCCCCEEEEEECC--CEEEEEEECCCCCCCCCCCCCCCCC
T ss_conf 999787764-567--73677501541377888764699963899969999458--5799999248655575455778665
Q ss_pred CHHH-HHHHHCCCCCCCCCCC-------CCCCCEEEEEECCCCCCEEEEEECCCCCCEEEEEEECCEEEEEECCC
Q ss_conf 1134-4442114455234222-------45532034321035770899810788876699995187599981544
Q 000731 488 FYAQ-EIELACSEDHVQGLLT-------CAGWHAKVSTQIPLEGLVIAIAPNNAKKYSAFLQFHGGKISEYMSRV 554 (1325)
Q Consensus 488 ~~~~-e~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~q~~dG~v~~~~~~~ 554 (1325)
.+.+ ...+..+.+.. ..+. ..+.+. +.....+.+.|.+++++| ++ .++....||+|..|+...
T Consensus 535 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~-~~~l~~h~~~V~svafSp-dG-~lAsgs~D~tv~lwd~~~ 605 (902)
T 2oaj_A 535 EMNFRRFSLNNTNGVL-VDVRDRAPTGVRQGFMP-STAVHANKGKTSAINNSN-IG-FVGIAYAAGSLMLIDRRG 605 (902)
T ss_dssp ---CCSCCGGGSSCSE-EECGGGCCTTCSEEEEE-EEEECCCSCSEEEEEECB-TS-EEEEEETTSEEEEEETTT
T ss_pred CEEEEECCCCCCCCCC-CCCCCCCCCCCCCCCCE-EEEEECCCCCEEEEEECC-CC-EEEEEECCCCEEEEECCC
T ss_conf 1134551346796543-22423689887776014-699986888677999648-76-899995897699998889
Done!