BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000733
(1324 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3FMO|A Chain A, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
pdb|3FMP|A Chain A, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
pdb|3FMP|C Chain C, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
Length = 450
Score = 47.0 bits (110), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 104/443 (23%), Positives = 184/443 (41%), Gaps = 84/443 (18%)
Query: 26 DEIGESIPIIRDDDSQFD-------LQNPPSLP------LAVSQLSHQLIFAAHSSGFCV 72
DE+ IP D QF +P LP LAVS + L+FA +SG +
Sbjct: 3 DEMDAMIPEREMKDFQFRALKKVRIFDSPEELPKERSSLLAVSN-KYGLVFAGGASGLQI 61
Query: 73 ARTNDVIDAAKEMKENGTRCCVQELSVVDVPFENENVDILSLSNDESTLAVSLYQSPH-- 130
T +++ K + V ++ + VP + + L+LS D TL+ + S +
Sbjct: 62 FPTKNLLIQNKPGDDPNK--IVDKVQGLLVPMKFP-IHHLALSCDNLTLSACMMSSEYGS 118
Query: 131 -IHFFSVHSLLN--KEIKPSFSCSL---NGSTYVKDIRWRKK-PENSFLALSNVGRLYRG 183
I FF V + N K+ K F+ + V D++W P + L++ G +
Sbjct: 119 IIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLAD-GSIAVL 177
Query: 184 GVNGPLEDVMD-----NVDAVEWSVKGKFVAVAKKN---VLSILTSKLKERLPISLSFKS 235
V ++ V +V WS KGK +AV K+N V + T + K+ +P ++S
Sbjct: 178 QVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPTLQEKKVIPCPPFYES 237
Query: 236 WVGDCDVNCSVKVDSIRWVRRDCIIIGCFQLTEDGKEE---NYLVQVIQSKDGK---ITD 289
+ V+V + W+ + DG E + ++ ++ K+ K I
Sbjct: 238 -------DHPVRVLDVLWI--GTYVFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFV 288
Query: 290 ASSEPXXXXXXXXXXXXXXXXXPSGTGPYLFLTYVERWGLAISANRKNIDDHVVLLRWSL 349
EP + +L+Y+E W L ++A+ + + + L R S
Sbjct: 289 NFMEPCYGSCTERQH-------------HYYLSYIEEWDLVLAASAASTEVSI-LARQS- 333
Query: 350 DDEKNDIAVVDINRDKWI------PRIKLQDNGNDNLIMGLCIDKVSLCGKVKVQLGVEE 403
D+ IN + W+ + + D +D+L MG+ +D + +V++ + +E
Sbjct: 334 -DQ--------INWESWLLEDSSRAELPVTDKSDDSLPMGVVVDYTN---QVEITIS-DE 380
Query: 404 KELSPYFILMCLTLDGKLNMFHV 426
K L P +LM L+ DG L F++
Sbjct: 381 KTLPPAPVLMLLSTDGVLCPFYM 403
>pdb|2OIT|A Chain A, Crystal Structure Of The N-Terminal Domain Of The Human
Proto-Oncogene Nup214CAN
Length = 434
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 104/443 (23%), Positives = 184/443 (41%), Gaps = 84/443 (18%)
Query: 26 DEIGESIPIIRDDDSQFD-------LQNPPSLP------LAVSQLSHQLIFAAHSSGFCV 72
DE+ IP D QF +P LP LAVS + L+FA +SG +
Sbjct: 3 DEMDAMIPEREMKDFQFRALKKVRIFDSPEELPKERSSLLAVSN-KYGLVFAGGASGLQI 61
Query: 73 ARTNDVIDAAKEMKENGTRCCVQELSVVDVPFENENVDILSLSNDESTLAVSLYQSPH-- 130
T +++ K + V ++ + VP + + L+LS D TL+ + S +
Sbjct: 62 FPTKNLLIQNKPGDDPNK--IVDKVQGLLVPMKFP-IHHLALSCDNLTLSACMMSSEYGS 118
Query: 131 -IHFFSVHSLLN--KEIKPSFSCSL---NGSTYVKDIRWRKK-PENSFLALSNVGRLYRG 183
I FF V + N K+ K F+ + V D++W P + L++ G +
Sbjct: 119 IIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLAD-GSIAVL 177
Query: 184 GVNGPLEDVMD-----NVDAVEWSVKGKFVAVAKKN---VLSILTSKLKERLPISLSFKS 235
V ++ V +V WS KGK +AV K+N V + T + K+ +P ++S
Sbjct: 178 QVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPTLQEKKVIPCPPFYES 237
Query: 236 WVGDCDVNCSVKVDSIRWVRRDCIIIGCFQLTEDGKEE---NYLVQVIQSKDGK---ITD 289
+ V+V + W+ + DG E + ++ ++ K+ K I
Sbjct: 238 -------DHPVRVLDVLWI--GTYVFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFV 288
Query: 290 ASSEPXXXXXXXXXXXXXXXXXPSGTGPYLFLTYVERWGLAISANRKNIDDHVVLLRWSL 349
EP + +L+Y+E W L ++A+ + + + L R S
Sbjct: 289 NFMEPCYGSCTERQH-------------HYYLSYIEEWDLVLAASAASTEVSI-LARQS- 333
Query: 350 DDEKNDIAVVDINRDKWI------PRIKLQDNGNDNLIMGLCIDKVSLCGKVKVQLGVEE 403
D+ IN + W+ + + D +D+L MG+ +D + +V++ + +E
Sbjct: 334 -DQ--------INWESWLLEDSSRAELPVTDKSDDSLPMGVVVDYTN---QVEITIS-DE 380
Query: 404 KELSPYFILMCLTLDGKLNMFHV 426
K L P +LM L+ DG L F++
Sbjct: 381 KTLPPAPVLMLLSTDGVLCPFYM 403
>pdb|3FHC|A Chain A, Crystal Structure Of Human Dbp5 In Complex With Nup214
Length = 405
Score = 43.9 bits (102), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 104/443 (23%), Positives = 184/443 (41%), Gaps = 84/443 (18%)
Query: 26 DEIGESIPIIRDDDSQFD-------LQNPPSLP------LAVSQLSHQLIFAAHSSGFCV 72
DE+ IP D QF +P LP LAVS + L+FA +SG +
Sbjct: 3 DEMDAMIPEREMKDFQFRALKKVRIFDSPEELPKERSSLLAVSN-KYGLVFAGGASGLQI 61
Query: 73 ARTNDVIDAAKEMKENGTRCCVQELSVVDVPFENENVDILSLSNDESTLAVSLYQSPH-- 130
T +++ K + V ++ + VP + + L+LS D TL+ + S +
Sbjct: 62 FPTKNLLIQNKPGDDPNK--IVDKVQGLLVPMKFP-IHHLALSCDNLTLSACMMSSEYGS 118
Query: 131 -IHFFSVHSLLN--KEIKPSFSCSL---NGSTYVKDIRWRKK-PENSFLALSNVGRLYRG 183
I FF V + N K+ K F+ + V D++W P + L++ G +
Sbjct: 119 IIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLAD-GSIAVL 177
Query: 184 GVNGPLEDVMD-----NVDAVEWSVKGKFVAVAKKN---VLSILTSKLKERLPISLSFKS 235
V ++ V +V WS KGK +AV K+N V + T + K+ +P ++S
Sbjct: 178 QVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPTLQEKKVIPCPPFYES 237
Query: 236 WVGDCDVNCSVKVDSIRWVRRDCIIIGCFQLTEDGKEE---NYLVQVIQSKDGK---ITD 289
+ V+V + W+ + DG E + ++ ++ K+ K I
Sbjct: 238 -------DHPVRVLDVLWIGT--YVFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFV 288
Query: 290 ASSEPXXXXXXXXXXXXXXXXXPSGTGPYLFLTYVERWGLAISANRKNIDDHVVLLRWSL 349
EP + +L+Y+E W L ++A+ + + + L R S
Sbjct: 289 NFMEPCYGSCTERQH-------------HYYLSYIEEWDLVLAASAASTEVSI-LARQS- 333
Query: 350 DDEKNDIAVVDINRDKWI------PRIKLQDNGNDNLIMGLCIDKVSLCGKVKVQLGVEE 403
D+ IN + W+ + + D +D+L MG+ +D + +V++ + +E
Sbjct: 334 -DQ--------INWESWLLEDSSRAELPVTDKSDDSLPMGVVVDYTN---QVEITIS-DE 380
Query: 404 KELSPYFILMCLTLDGKLNMFHV 426
K L P +LM L+ DG L F++
Sbjct: 381 KTLPPAPVLMLLSTDGVLCPFYM 403
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.129 0.369
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,263,400
Number of Sequences: 62578
Number of extensions: 1367643
Number of successful extensions: 2191
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 2188
Number of HSP's gapped (non-prelim): 6
length of query: 1324
length of database: 14,973,337
effective HSP length: 110
effective length of query: 1214
effective length of database: 8,089,757
effective search space: 9820964998
effective search space used: 9820964998
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 57 (26.6 bits)