BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 000733
         (1324 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P35658|NU214_HUMAN Nuclear pore complex protein Nup214 OS=Homo sapiens GN=NUP214 PE=1
           SV=2
          Length = 2090

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 106/439 (24%), Positives = 188/439 (42%), Gaps = 79/439 (17%)

Query: 19  ESNDFFFDEIGESIPIIRDDDSQFDLQNPPSLPLAVSQLSHQLIFAAHSSGFCVARTNDV 78
           E  DF F  + +    +R  DS  +L    S  LAVS   + L+FA  +SG  +  T ++
Sbjct: 13  EMKDFQFRALKK----VRIFDSPEELPKERSSLLAVSN-KYGLVFAGGASGLQIFPTKNL 67

Query: 79  IDAAKEMKE-NGTRCCVQELSVVDVPFENENVDILSLSNDESTLAVSLYQSPH---IHFF 134
           +   K   + N     VQ L +V + F    +  L+LS D  TL+  +  S +   I FF
Sbjct: 68  LIQNKPGDDPNKIVDKVQGL-LVPMKFP---IHHLALSCDNLTLSACMMSSEYGSIIAFF 123

Query: 135 SVHSLLN--KEIKPSFSCSL---NGSTYVKDIRWRKK-PE-------NSFLALSNVGRLY 181
            V +  N  K+ K  F+      +    V D++W    P        +  +A+  V    
Sbjct: 124 DVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETV 183

Query: 182 RGGVNGPLEDVMDNVDAVEWSVKGKFVAVAKKN---VLSILTSKLKERLPISLSFKSWVG 238
           +  V   L   +  V +V WS KGK +AV K+N   V  + T + K+ +P    ++S   
Sbjct: 184 K--VCATLPSTVA-VTSVCWSPKGKQLAVGKQNGTVVQYLPTLQEKKVIPCPPFYES--- 237

Query: 239 DCDVNCSVKVDSIRWVRRDCIIIGCFQLTEDGKEE---NYLVQVIQSKDGKITDASSEPV 295
               +  V+V  + W+     +        DG  E   + ++ ++  K+ K         
Sbjct: 238 ----DHPVRVLDVLWI--GTYVFAIVYAAADGTLETSPDVVMALLPKKEEK--------- 282

Query: 296 VLSFSDVFSDVIDDILPSGT--GPYLFLTYVERWGLAISANRKNIDDHVVLLRWSLDDEK 353
                ++F + ++    S T    + +L+Y+E W L ++A+  + +  V +L    D   
Sbjct: 283 ---HPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTE--VSILARQSD--- 334

Query: 354 NDIAVVDINRDKWI------PRIKLQDNGNDNLIMGLCIDKVSLCGKVKVQLGVEEKELS 407
                  IN + W+        + + D  +D+L MG+ +D      +V++ +  +EK L 
Sbjct: 335 ------QINWESWLLEDSSRAELPVTDKSDDSLPMGVVVD---YTNQVEITIS-DEKTLP 384

Query: 408 PYFILMCLTLDGKLNMFHV 426
           P  +LM L+ DG L  F++
Sbjct: 385 PAPVLMLLSTDGVLCPFYM 403


>sp|Q80U93|NU214_MOUSE Nuclear pore complex protein Nup214 OS=Mus musculus GN=Nup214 PE=1
           SV=2
          Length = 2085

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 105/442 (23%), Positives = 188/442 (42%), Gaps = 85/442 (19%)

Query: 19  ESNDFFFDEIGESIPIIRDDDSQFDLQNPPSLPLAVSQLSHQLIFAAHSSGFCVARTNDV 78
           E  DF F  + +    +R  DS  +L    S  L +S   + ++FA  ++G  V  T  +
Sbjct: 13  EMKDFQFRALKK----VRIFDSPEELPKERSSVLTISN-KYGMLFAGGTNGLNVFPTKSL 67

Query: 79  IDAAKEMKENGTRCCVQELSVVDVPFENENVDILSLSNDESTLAVSLYQSPH---IHFFS 135
           +   K   +      V  +  ++VP +   V  L+LS D  TL+  +  S +   I FF 
Sbjct: 68  LIQNKPGDD--PNKIVDTIQGLNVPMKFP-VHHLALSCDSLTLSACMMSSEYGSIIAFFD 124

Query: 136 VHSLLN--KEIKPSFS---CSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGGVNGPLE 190
           V +  N  K +K  F+    S + S  V D++W      S +A+     L  G ++  + 
Sbjct: 125 VRTFSNQAKPLKRPFTYHKVSNDASGMVNDMKWNPT-VPSMVAVC----LADGSIS--VL 177

Query: 191 DVMD------------NVDAVEWSVKGKFVAVAKKN---VLSILTSKLKERLPISLSFKS 235
            V D             V  V WS KGK +AV K+N   V  + T + K+ +P    ++S
Sbjct: 178 QVTDVVKVCATLPPSTGVTCVCWSPKGKQLAVGKQNGTVVQYLPTLQEKKVIPCPPFYES 237

Query: 236 WVGDCDVNCSVKVDSIRWVRRDCIIIGCFQLTEDGKEE---NYLVQVIQSKDGKITDASS 292
                  +  V+V  + W+      I       DG  E   + ++ ++  K+ K      
Sbjct: 238 -------DHPVRVLDVLWIGTYVFTI--VYAGADGTLETCPDVVMALLPKKEEK------ 282

Query: 293 EPVVLSFSDVFSDVIDDILPSGT--GPYLFLTYVERWGLAISANRKNIDDHVVLLRWSLD 350
                   ++F + ++    S T    + +L+Y+E W L ++A+  + +  ++       
Sbjct: 283 ------HPEIFVNFMEPCYSSCTERQHHYYLSYIEEWDLVLAASAASTEVSILA------ 330

Query: 351 DEKNDIAVVDINRDKWI------PRIKLQDNGNDNLIMGLCIDKVSLCGKVKVQLGVEEK 404
             +ND      N + W+        + + D  +D+L MG+ ID  +   +V+V +  EEK
Sbjct: 331 -RQND----QTNWESWLLEDSSRAELPVTDKSDDSLPMGVAIDYTN---EVEVTIN-EEK 381

Query: 405 ELSPYFILMCLTLDGKLNMFHV 426
            L P  +L+ L+ DG L  F++
Sbjct: 382 TLPPAPVLLLLSTDGVLCPFYM 403


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.312    0.128    0.365 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 489,906,978
Number of Sequences: 539616
Number of extensions: 21193483
Number of successful extensions: 48830
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 227
Number of HSP's that attempted gapping in prelim test: 48132
Number of HSP's gapped (non-prelim): 786
length of query: 1324
length of database: 191,569,459
effective HSP length: 130
effective length of query: 1194
effective length of database: 121,419,379
effective search space: 144974738526
effective search space used: 144974738526
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 68 (30.8 bits)