Query 000733
Match_columns 1324
No_of_seqs 150 out of 219
Neff 3.7
Searched_HMMs 46136
Date Mon Apr 1 22:50:40 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000733.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000733hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3630 Nuclear pore complex, 100.0 1.5E-51 3.2E-56 493.5 22.9 382 11-434 6-419 (1405)
2 KOG2394 WD40 protein DMR-N9 [G 99.2 4.3E-11 9.3E-16 139.7 10.8 91 143-237 279-377 (636)
3 PTZ00421 coronin; Provisional 99.0 4.1E-08 8.9E-13 116.9 22.0 114 106-221 75-197 (493)
4 KOG1274 WD40 repeat protein [G 98.6 4.5E-07 9.7E-12 111.7 15.7 152 48-222 98-262 (933)
5 cd00200 WD40 WD40 domain, foun 98.6 2E-06 4.3E-11 85.8 17.2 105 107-219 178-288 (289)
6 PTZ00420 coronin; Provisional 98.6 2E-06 4.3E-11 104.5 20.4 119 102-222 70-197 (568)
7 cd00200 WD40 WD40 domain, foun 98.6 3.1E-06 6.7E-11 84.5 18.1 137 107-263 10-153 (289)
8 KOG0973 Histone transcription 98.5 7.3E-06 1.6E-10 102.6 23.4 309 51-429 16-357 (942)
9 KOG0318 WD40 repeat stress pro 98.5 3.1E-06 6.7E-11 100.0 19.0 176 43-258 403-586 (603)
10 PF08662 eIF2A: Eukaryotic tra 98.5 2.4E-06 5.2E-11 90.2 14.2 108 108-226 61-183 (194)
11 KOG0266 WD40 repeat-containing 98.4 6.4E-06 1.4E-10 97.0 17.6 144 107-264 204-353 (456)
12 PLN00181 protein SPA1-RELATED; 98.4 7.1E-06 1.5E-10 102.1 18.3 113 106-221 483-605 (793)
13 PF08662 eIF2A: Eukaryotic tra 98.4 1.2E-05 2.6E-10 85.0 16.3 137 111-265 10-163 (194)
14 KOG1407 WD40 repeat protein [F 98.3 5.4E-06 1.2E-10 92.0 13.5 106 108-219 22-133 (313)
15 KOG0269 WD40 repeat-containing 98.3 8.8E-06 1.9E-10 99.4 15.6 140 108-263 135-281 (839)
16 KOG0296 Angio-associated migra 98.3 1.1E-05 2.5E-10 92.3 14.6 152 44-221 60-219 (399)
17 KOG0315 G-protein beta subunit 98.3 6.7E-06 1.5E-10 90.8 12.1 150 45-220 39-195 (311)
18 PLN00181 protein SPA1-RELATED; 98.2 7.6E-05 1.6E-09 93.2 21.9 154 49-221 486-647 (793)
19 KOG1523 Actin-related protein 98.2 0.00014 3.1E-09 82.7 20.3 135 108-258 12-159 (361)
20 KOG0645 WD40 repeat protein [G 98.2 5.6E-05 1.2E-09 84.4 16.8 149 102-266 10-171 (312)
21 KOG0271 Notchless-like WD40 re 98.1 7.9E-06 1.7E-10 94.0 10.1 106 106-220 367-479 (480)
22 KOG0293 WD40 repeat-containing 98.1 2.6E-05 5.5E-10 90.6 13.7 115 107-227 225-347 (519)
23 KOG0318 WD40 repeat stress pro 98.1 6.4E-05 1.4E-09 89.3 15.7 148 48-220 445-600 (603)
24 KOG1446 Histone H3 (Lys4) meth 98.0 8.1E-05 1.8E-09 84.2 15.0 161 48-220 81-260 (311)
25 KOG1445 Tumor-specific antigen 98.0 3.8E-05 8.3E-10 92.3 13.1 146 107-263 628-782 (1012)
26 TIGR03866 PQQ_ABC_repeats PQQ- 98.0 5.7E-05 1.2E-09 79.3 12.5 119 108-231 158-289 (300)
27 KOG0307 Vesicle coat complex C 98.0 2.5E-05 5.4E-10 98.6 10.7 148 107-264 65-225 (1049)
28 KOG0266 WD40 repeat-containing 98.0 9.4E-05 2E-09 87.4 14.6 108 106-221 246-363 (456)
29 KOG1408 WD40 repeat protein [F 98.0 7.6E-05 1.6E-09 90.8 13.7 178 36-220 250-487 (1080)
30 PRK11028 6-phosphogluconolacto 98.0 0.003 6.6E-08 70.3 25.4 110 108-221 81-204 (330)
31 KOG0772 Uncharacterized conser 97.9 7.7E-05 1.7E-09 88.5 12.9 111 108-220 216-345 (641)
32 KOG0271 Notchless-like WD40 re 97.9 3.2E-05 6.9E-10 89.2 9.3 78 144-222 101-187 (480)
33 KOG0305 Anaphase promoting com 97.9 0.00015 3.2E-09 86.9 15.0 137 107-262 302-448 (484)
34 PTZ00420 coronin; Provisional 97.9 0.0003 6.5E-09 86.0 17.8 128 114-260 34-182 (568)
35 KOG0294 WD40 repeat-containing 97.9 0.0003 6.5E-09 80.0 15.9 181 42-262 37-225 (362)
36 PTZ00421 coronin; Provisional 97.9 0.0003 6.5E-09 84.6 17.1 133 114-261 36-184 (493)
37 KOG0273 Beta-transducin family 97.9 0.00024 5.1E-09 83.8 15.5 140 106-264 359-512 (524)
38 KOG0305 Anaphase promoting com 97.9 0.00024 5.1E-09 85.2 15.6 182 36-257 167-357 (484)
39 TIGR03866 PQQ_ABC_repeats PQQ- 97.9 0.00041 8.9E-09 72.9 15.8 107 108-221 32-144 (300)
40 KOG2110 Uncharacterized conser 97.8 0.00073 1.6E-08 78.1 18.3 188 49-259 8-232 (391)
41 KOG1274 WD40 repeat protein [G 97.8 0.00093 2E-08 83.6 20.3 179 49-263 57-250 (933)
42 KOG4378 Nuclear protein COP1 [ 97.8 0.00012 2.5E-09 86.7 11.6 107 108-219 166-277 (673)
43 KOG0291 WD40-repeat-containing 97.8 0.00037 8E-09 85.7 15.6 139 110-260 18-160 (893)
44 KOG0302 Ribosome Assembly prot 97.7 0.0014 3.1E-08 76.0 18.2 180 66-264 172-366 (440)
45 KOG0272 U4/U6 small nuclear ri 97.7 0.00024 5.2E-09 82.9 12.1 109 106-222 303-418 (459)
46 KOG0291 WD40-repeat-containing 97.7 0.0066 1.4E-07 75.2 24.5 263 107-427 266-550 (893)
47 KOG0268 Sof1-like rRNA process 97.7 0.0002 4.3E-09 82.5 11.0 138 108-263 189-333 (433)
48 KOG0284 Polyadenylation factor 97.7 0.00017 3.7E-09 83.9 10.2 139 105-263 137-282 (464)
49 KOG1587 Cytoplasmic dynein int 97.7 0.00019 4.2E-09 87.4 11.1 107 107-220 399-514 (555)
50 KOG0640 mRNA cleavage stimulat 97.7 0.00095 2.1E-08 76.0 15.5 195 48-262 114-322 (430)
51 KOG0283 WD40 repeat-containing 97.6 0.00024 5.1E-09 87.8 11.1 134 107-255 370-511 (712)
52 KOG1407 WD40 repeat protein [F 97.6 0.0023 4.9E-08 71.8 17.2 113 110-231 110-229 (313)
53 KOG1538 Uncharacterized conser 97.6 0.00051 1.1E-08 83.4 12.8 131 108-256 14-187 (1081)
54 KOG0279 G protein beta subunit 97.6 0.0011 2.5E-08 74.5 14.7 139 107-265 106-252 (315)
55 KOG0288 WD40 repeat protein Ti 97.6 0.00026 5.6E-09 82.5 10.0 116 100-220 336-459 (459)
56 KOG0315 G-protein beta subunit 97.6 0.0013 2.8E-08 73.4 14.8 150 98-264 32-186 (311)
57 KOG2055 WD40 repeat protein [G 97.6 0.0004 8.7E-09 81.8 11.5 176 40-220 297-510 (514)
58 KOG0639 Transducin-like enhanc 97.6 0.00058 1.3E-08 81.1 12.8 153 52-227 425-584 (705)
59 KOG2048 WD40 repeat protein [G 97.6 0.0039 8.4E-08 76.4 19.5 147 48-220 27-182 (691)
60 KOG0272 U4/U6 small nuclear ri 97.5 0.00051 1.1E-08 80.3 11.1 113 108-229 177-296 (459)
61 PF10282 Lactonase: Lactonase, 97.5 0.047 1E-06 62.4 26.2 252 47-344 37-320 (345)
62 PF10168 Nup88: Nuclear pore c 97.4 0.23 5E-06 63.1 33.7 131 47-187 32-180 (717)
63 PRK03629 tolB translocation pr 97.4 0.0029 6.2E-08 74.4 16.1 104 108-219 200-314 (429)
64 KOG0278 Serine/threonine kinas 97.4 0.00085 1.8E-08 74.8 10.7 103 107-219 185-294 (334)
65 PRK05137 tolB translocation pr 97.4 0.0017 3.7E-08 75.9 13.8 111 107-224 202-324 (435)
66 KOG0283 WD40 repeat-containing 97.4 0.0018 3.8E-08 80.4 14.4 160 48-221 391-575 (712)
67 KOG0306 WD40-repeat-containing 97.4 0.0023 5E-08 79.0 14.9 112 99-220 407-536 (888)
68 KOG0263 Transcription initiati 97.4 0.00072 1.6E-08 83.3 10.7 113 106-220 451-605 (707)
69 PRK11028 6-phosphogluconolacto 97.4 0.0033 7.2E-08 70.0 15.2 112 108-221 127-257 (330)
70 KOG0303 Actin-binding protein 97.4 0.005 1.1E-07 72.1 16.7 158 48-222 36-203 (472)
71 KOG0310 Conserved WD40 repeat- 97.4 0.0028 6.1E-08 75.3 14.8 170 49-259 29-210 (487)
72 KOG0307 Vesicle coat complex C 97.4 0.00036 7.7E-09 88.6 8.0 179 59-264 80-273 (1049)
73 KOG0264 Nucleosome remodeling 97.3 0.0014 3.1E-08 77.0 11.9 149 107-264 228-392 (422)
74 KOG2321 WD40 repeat protein [G 97.3 0.0021 4.6E-08 77.6 13.5 167 42-224 171-346 (703)
75 KOG0279 G protein beta subunit 97.3 0.0051 1.1E-07 69.6 15.6 147 107-264 149-302 (315)
76 KOG0285 Pleiotropic regulator 97.3 0.0028 6.2E-08 73.3 13.5 147 47-220 194-346 (460)
77 PF10282 Lactonase: Lactonase, 97.3 0.0056 1.2E-07 69.7 15.4 161 47-222 144-322 (345)
78 PRK03629 tolB translocation pr 97.2 0.0038 8.3E-08 73.3 14.1 113 109-229 245-370 (429)
79 KOG1063 RNA polymerase II elon 97.2 0.0022 4.7E-08 78.7 12.1 189 22-223 419-650 (764)
80 KOG2110 Uncharacterized conser 97.2 0.0056 1.2E-07 71.1 14.7 107 108-221 131-247 (391)
81 KOG0645 WD40 repeat protein [G 97.2 0.0058 1.3E-07 68.9 14.3 115 99-220 98-223 (312)
82 KOG1332 Vesicle coat complex C 97.2 0.0025 5.4E-08 71.0 11.0 134 108-256 13-160 (299)
83 KOG0264 Nucleosome remodeling 97.2 0.0035 7.6E-08 73.8 12.6 142 112-264 183-335 (422)
84 KOG1446 Histone H3 (Lys4) meth 97.2 0.0044 9.6E-08 70.6 13.0 148 58-222 150-303 (311)
85 KOG0265 U5 snRNP-specific prot 97.1 0.033 7.1E-07 63.8 19.5 136 102-256 43-185 (338)
86 KOG0310 Conserved WD40 repeat- 97.1 0.017 3.8E-07 68.9 18.0 112 108-227 112-228 (487)
87 KOG0306 WD40-repeat-containing 97.1 0.008 1.7E-07 74.5 15.7 144 101-265 504-654 (888)
88 KOG2106 Uncharacterized conser 97.1 0.029 6.2E-07 67.5 19.7 137 107-272 408-553 (626)
89 KOG0273 Beta-transducin family 97.1 0.0057 1.2E-07 72.7 13.7 113 107-220 236-387 (524)
90 KOG0268 Sof1-like rRNA process 97.1 0.0011 2.4E-08 76.7 7.7 113 108-227 231-350 (433)
91 KOG2096 WD40 repeat protein [G 97.1 0.0042 9.1E-08 71.2 12.1 142 108-263 230-391 (420)
92 KOG0263 Transcription initiati 97.1 0.0023 5E-08 79.1 10.8 105 107-219 536-646 (707)
93 KOG1034 Transcriptional repres 97.1 0.0022 4.9E-08 73.5 9.8 196 42-263 39-267 (385)
94 KOG0277 Peroxisomal targeting 97.1 0.0037 8E-08 70.0 10.8 110 110-223 12-136 (311)
95 KOG0771 Prolactin regulatory e 97.0 0.0049 1.1E-07 72.2 12.2 102 110-220 148-309 (398)
96 KOG0277 Peroxisomal targeting 97.0 0.018 3.9E-07 64.8 15.9 91 154-254 146-243 (311)
97 KOG2139 WD40 repeat protein [G 97.0 0.0043 9.4E-08 72.0 11.5 101 108-215 197-302 (445)
98 KOG1539 WD repeat protein [Gen 97.0 0.027 5.9E-07 70.7 18.9 94 127-230 180-281 (910)
99 KOG0293 WD40 repeat-containing 97.0 0.0024 5.1E-08 74.9 9.0 106 108-220 271-382 (519)
100 PRK01742 tolB translocation pr 97.0 0.0083 1.8E-07 70.3 13.6 106 109-221 250-360 (429)
101 KOG0288 WD40 repeat protein Ti 97.0 0.0068 1.5E-07 71.2 12.5 139 104-263 300-449 (459)
102 KOG1332 Vesicle coat complex C 97.0 0.0052 1.1E-07 68.6 10.8 115 101-220 51-191 (299)
103 KOG0265 U5 snRNP-specific prot 96.9 0.005 1.1E-07 70.1 10.9 114 101-221 85-203 (338)
104 PRK05137 tolB translocation pr 96.9 0.012 2.7E-07 68.8 14.5 132 108-260 247-391 (435)
105 KOG2055 WD40 repeat protein [G 96.9 0.0063 1.4E-07 72.2 11.7 116 108-232 305-427 (514)
106 PRK01742 tolB translocation pr 96.9 0.0043 9.4E-08 72.6 10.5 105 108-220 205-320 (429)
107 KOG0647 mRNA export protein (c 96.9 0.0054 1.2E-07 69.9 10.6 99 148-258 20-126 (347)
108 KOG0295 WD40 repeat-containing 96.9 0.02 4.2E-07 66.7 15.1 119 98-225 227-365 (406)
109 PRK01029 tolB translocation pr 96.9 0.024 5.2E-07 67.1 16.3 136 109-260 233-385 (428)
110 PRK04922 tolB translocation pr 96.9 0.016 3.6E-07 67.9 14.8 107 109-223 250-369 (433)
111 KOG0302 Ribosome Assembly prot 96.8 0.0066 1.4E-07 70.7 10.6 108 108-220 259-376 (440)
112 KOG2106 Uncharacterized conser 96.8 0.017 3.7E-07 69.4 13.9 136 108-264 370-510 (626)
113 KOG0284 Polyadenylation factor 96.8 0.029 6.3E-07 66.1 15.5 138 107-264 181-325 (464)
114 PRK02889 tolB translocation pr 96.8 0.0097 2.1E-07 69.8 12.0 118 109-232 286-413 (427)
115 KOG0650 WD40 repeat nucleolar 96.8 0.037 8E-07 67.7 16.6 140 106-264 400-585 (733)
116 KOG2111 Uncharacterized conser 96.7 0.0078 1.7E-07 69.0 10.4 81 101-188 176-258 (346)
117 PF04762 IKI3: IKI3 family; I 96.7 0.02 4.3E-07 74.1 15.3 138 109-255 24-176 (928)
118 KOG0649 WD40 repeat protein [G 96.7 0.024 5.3E-07 63.5 13.3 155 53-221 17-185 (325)
119 TIGR02800 propeller_TolB tol-p 96.7 0.017 3.7E-07 66.0 12.7 100 108-214 191-298 (417)
120 KOG0275 Conserved WD40 repeat- 96.7 0.015 3.3E-07 66.7 11.9 109 106-220 348-465 (508)
121 KOG0772 Uncharacterized conser 96.6 0.026 5.7E-07 68.0 14.0 110 108-220 270-392 (641)
122 PRK02889 tolB translocation pr 96.6 0.04 8.6E-07 64.8 15.6 109 108-222 241-360 (427)
123 KOG0278 Serine/threonine kinas 96.6 0.013 2.8E-07 65.7 10.6 118 108-232 102-224 (334)
124 KOG0646 WD40 repeat protein [G 96.6 0.023 4.9E-07 67.7 13.1 148 48-219 83-244 (476)
125 KOG0643 Translation initiation 96.6 0.025 5.3E-07 64.1 12.6 120 108-229 95-228 (327)
126 PRK04922 tolB translocation pr 96.6 0.018 4E-07 67.5 12.2 118 109-232 294-421 (433)
127 KOG0313 Microtubule binding pr 96.6 0.013 2.8E-07 68.4 10.7 108 108-220 302-416 (423)
128 KOG1188 WD40 repeat protein [G 96.6 0.037 7.9E-07 64.2 14.1 108 109-220 120-240 (376)
129 KOG0289 mRNA splicing factor [ 96.5 0.017 3.6E-07 68.4 11.4 104 108-219 349-459 (506)
130 TIGR02800 propeller_TolB tol-p 96.5 0.018 4E-07 65.7 11.8 116 109-232 280-407 (417)
131 PRK00178 tolB translocation pr 96.5 0.019 4.1E-07 66.7 11.9 107 108-221 200-318 (430)
132 KOG0275 Conserved WD40 repeat- 96.5 0.0033 7.3E-08 71.9 5.4 108 107-219 214-333 (508)
133 KOG0289 mRNA splicing factor [ 96.5 0.1 2.2E-06 62.2 17.4 138 106-263 303-450 (506)
134 KOG2315 Predicted translation 96.4 0.029 6.3E-07 68.0 13.0 110 101-220 264-388 (566)
135 PRK04792 tolB translocation pr 96.4 0.033 7.2E-07 66.1 13.2 107 108-221 219-337 (448)
136 KOG2048 WD40 repeat protein [G 96.4 0.066 1.4E-06 66.2 15.6 131 107-258 26-167 (691)
137 PF00780 CNH: CNH domain; Int 96.4 0.43 9.2E-06 52.0 20.4 182 59-263 7-206 (275)
138 KOG1273 WD40 repeat protein [G 96.4 0.054 1.2E-06 62.5 13.9 106 108-221 67-182 (405)
139 KOG2445 Nuclear pore complex c 96.3 0.071 1.5E-06 61.4 14.6 113 107-220 113-254 (361)
140 KOG0319 WD40-repeat-containing 96.3 0.024 5.1E-07 70.4 11.4 151 52-228 25-183 (775)
141 KOG0276 Vesicle coat complex C 96.3 0.1 2.2E-06 64.2 16.4 159 43-231 55-222 (794)
142 PF04762 IKI3: IKI3 family; I 96.3 0.094 2E-06 68.1 17.3 150 107-263 305-504 (928)
143 KOG0641 WD40 repeat protein [G 96.2 0.083 1.8E-06 58.8 14.1 75 144-219 20-116 (350)
144 KOG1524 WD40 repeat-containing 96.2 0.031 6.7E-07 67.6 11.6 135 109-265 107-247 (737)
145 KOG4640 Anaphase-promoting com 96.2 0.0097 2.1E-07 72.8 7.6 63 156-220 21-90 (665)
146 KOG0973 Histone transcription 96.2 0.027 5.9E-07 72.0 11.7 138 108-259 15-185 (942)
147 KOG2096 WD40 repeat protein [G 96.2 0.14 3.1E-06 59.3 16.2 123 104-229 84-224 (420)
148 KOG0643 Translation initiation 96.2 0.047 1E-06 61.9 12.2 106 107-221 53-176 (327)
149 KOG0640 mRNA cleavage stimulat 96.2 0.025 5.3E-07 65.0 9.9 106 108-219 218-332 (430)
150 PF04053 Coatomer_WDAD: Coatom 96.2 0.047 1E-06 65.6 12.9 143 108-256 34-207 (443)
151 KOG1063 RNA polymerase II elon 96.2 0.034 7.4E-07 68.7 11.7 110 108-221 574-698 (764)
152 KOG0286 G-protein beta subunit 96.1 0.037 8E-07 63.3 11.1 106 107-220 187-301 (343)
153 KOG1445 Tumor-specific antigen 96.1 0.022 4.8E-07 69.7 9.4 139 106-257 79-226 (1012)
154 KOG0299 U3 snoRNP-associated p 96.1 0.038 8.1E-07 65.9 11.0 137 107-263 203-345 (479)
155 KOG0296 Angio-associated migra 96.0 0.075 1.6E-06 62.1 12.7 101 109-219 289-395 (399)
156 COG2319 FOG: WD40 repeat [Gene 95.9 0.12 2.6E-06 53.8 13.0 110 106-222 155-271 (466)
157 KOG0308 Conserved WD40 repeat- 95.9 0.044 9.6E-07 67.5 11.1 123 106-231 117-250 (735)
158 KOG0286 G-protein beta subunit 95.9 0.26 5.6E-06 56.7 16.3 146 100-263 139-291 (343)
159 PF02239 Cytochrom_D1: Cytochr 95.9 0.088 1.9E-06 61.6 13.1 115 100-220 72-200 (369)
160 KOG0299 U3 snoRNP-associated p 95.9 0.057 1.2E-06 64.4 11.4 100 107-214 328-446 (479)
161 KOG0321 WD40 repeat-containing 95.9 0.082 1.8E-06 65.1 12.9 135 112-257 223-372 (720)
162 PRK01029 tolB translocation pr 95.9 0.099 2.2E-06 62.0 13.6 117 109-229 283-410 (428)
163 KOG4283 Transcription-coupled 95.8 0.13 2.7E-06 59.2 13.5 198 47-263 44-264 (397)
164 KOG0270 WD40 repeat-containing 95.8 0.099 2.1E-06 62.3 13.1 113 106-224 286-406 (463)
165 KOG0647 mRNA export protein (c 95.8 0.14 3.1E-06 58.9 13.9 122 106-232 27-156 (347)
166 PRK00178 tolB translocation pr 95.8 0.16 3.4E-06 59.3 14.8 106 109-222 245-363 (430)
167 KOG0301 Phospholipase A2-activ 95.8 0.13 2.9E-06 63.9 14.4 102 106-222 179-288 (745)
168 KOG2919 Guanine nucleotide-bin 95.7 0.058 1.2E-06 62.4 10.5 107 109-219 161-278 (406)
169 KOG0269 WD40 repeat-containing 95.7 0.035 7.6E-07 69.3 9.1 145 108-265 41-196 (839)
170 COG2706 3-carboxymuconate cycl 95.7 2.3 4.9E-05 50.2 23.0 207 106-343 88-318 (346)
171 KOG2445 Nuclear pore complex c 95.6 0.12 2.7E-06 59.5 12.5 110 108-220 15-142 (361)
172 COG2319 FOG: WD40 repeat [Gene 95.6 0.21 4.5E-06 52.1 13.1 105 109-219 112-226 (466)
173 PF11768 DUF3312: Protein of u 95.5 0.11 2.3E-06 63.7 12.3 79 97-186 251-329 (545)
174 PRK04792 tolB translocation pr 95.5 0.22 4.7E-06 59.4 14.7 103 109-219 264-377 (448)
175 KOG0282 mRNA splicing factor [ 95.5 0.067 1.5E-06 64.1 10.3 106 106-220 258-370 (503)
176 KOG0267 Microtubule severing p 95.5 0.016 3.5E-07 71.7 5.4 106 106-219 70-181 (825)
177 KOG1036 Mitotic spindle checkp 95.5 0.25 5.3E-06 57.0 14.2 139 108-266 137-296 (323)
178 KOG0292 Vesicle coat complex C 95.4 0.23 5E-06 63.3 14.7 200 47-260 293-543 (1202)
179 KOG0641 WD40 repeat protein [G 95.4 2.4 5.2E-05 47.7 20.7 223 14-266 12-294 (350)
180 KOG1539 WD repeat protein [Gen 95.4 0.11 2.4E-06 65.5 11.8 103 108-220 495-604 (910)
181 KOG0290 Conserved WD40 repeat- 95.4 0.18 4E-06 57.9 12.5 149 106-265 196-355 (364)
182 KOG1538 Uncharacterized conser 95.3 0.12 2.7E-06 63.9 11.5 116 108-230 134-260 (1081)
183 KOG0282 mRNA splicing factor [ 95.2 0.054 1.2E-06 64.9 8.3 141 106-263 214-360 (503)
184 KOG0639 Transducin-like enhanc 95.2 0.081 1.8E-06 63.8 9.7 108 107-219 420-536 (705)
185 PF11768 DUF3312: Protein of u 95.2 0.24 5.1E-06 60.9 13.7 85 132-220 239-327 (545)
186 KOG4497 Uncharacterized conser 95.1 0.17 3.7E-06 58.8 11.6 99 108-215 320-424 (447)
187 KOG4497 Uncharacterized conser 95.1 0.055 1.2E-06 62.7 7.6 101 111-220 13-120 (447)
188 KOG1524 WD40 repeat-containing 95.0 0.085 1.9E-06 64.0 9.2 130 109-257 17-157 (737)
189 KOG0301 Phospholipase A2-activ 95.0 0.21 4.6E-06 62.1 12.6 136 104-264 138-278 (745)
190 PF02239 Cytochrom_D1: Cytochr 95.0 0.24 5.3E-06 58.0 12.7 106 120-232 7-119 (369)
191 KOG0319 WD40-repeat-containing 95.0 0.3 6.6E-06 61.2 13.8 142 106-263 411-565 (775)
192 KOG1587 Cytoplasmic dynein int 94.9 2 4.3E-05 53.6 20.5 88 129-222 222-323 (555)
193 KOG4328 WD40 protein [Function 94.8 0.18 3.9E-06 60.5 10.9 118 109-232 282-414 (498)
194 KOG1240 Protein kinase contain 94.8 0.64 1.4E-05 61.1 16.4 157 50-219 1052-1222(1431)
195 PF15492 Nbas_N: Neuroblastoma 94.7 8.9 0.00019 44.4 23.3 232 171-441 11-273 (282)
196 KOG4378 Nuclear protein COP1 [ 94.7 0.36 7.8E-06 58.5 13.0 109 106-220 121-237 (673)
197 KOG0308 Conserved WD40 repeat- 94.6 0.48 1E-05 58.9 14.1 156 47-218 118-281 (735)
198 KOG0270 WD40 repeat-containing 94.6 0.19 4.2E-06 59.9 10.5 133 117-263 191-347 (463)
199 PF10214 Rrn6: RNA polymerase 94.5 21 0.00046 46.1 32.2 118 100-220 74-230 (765)
200 KOG2139 WD40 repeat protein [G 94.5 0.73 1.6E-05 54.4 14.5 140 108-260 142-295 (445)
201 KOG0294 WD40 repeat-containing 94.4 0.5 1.1E-05 54.9 12.9 103 108-219 45-154 (362)
202 PF00400 WD40: WD domain, G-be 94.4 0.052 1.1E-06 42.4 3.7 27 193-219 11-38 (39)
203 KOG0316 Conserved WD40 repeat- 94.4 0.32 6.9E-06 54.8 11.0 107 106-220 101-211 (307)
204 KOG1036 Mitotic spindle checkp 94.2 0.38 8.3E-06 55.5 11.5 106 107-222 14-124 (323)
205 KOG2111 Uncharacterized conser 94.2 1.1 2.4E-05 52.2 15.1 150 48-220 94-254 (346)
206 PF00780 CNH: CNH domain; Int 94.2 0.99 2.2E-05 49.2 14.4 123 116-263 5-155 (275)
207 KOG0321 WD40 repeat-containing 94.2 0.15 3.4E-06 62.9 8.8 103 115-220 61-173 (720)
208 KOG0646 WD40 repeat protein [G 94.2 0.68 1.5E-05 55.8 13.8 161 48-230 125-313 (476)
209 COG2706 3-carboxymuconate cycl 94.2 1.9 4.2E-05 50.8 17.1 163 45-220 87-272 (346)
210 KOG0313 Microtubule binding pr 94.1 0.61 1.3E-05 55.2 13.0 146 107-264 194-364 (423)
211 KOG0285 Pleiotropic regulator 94.0 0.3 6.5E-06 57.4 10.3 110 106-227 151-268 (460)
212 PRK13616 lipoprotein LpqB; Pro 94.0 0.54 1.2E-05 58.6 13.2 137 108-262 351-513 (591)
213 PF00930 DPPIV_N: Dipeptidyl p 94.0 0.15 3.3E-06 58.5 7.9 92 115-215 1-122 (353)
214 KOG0650 WD40 repeat nucleolar 94.0 0.5 1.1E-05 58.4 12.3 169 45-224 451-639 (733)
215 KOG1408 WD40 repeat protein [F 93.8 0.5 1.1E-05 59.3 12.2 163 46-234 37-208 (1080)
216 PRK04043 tolB translocation pr 93.8 0.28 6E-06 58.4 9.9 112 111-232 281-410 (419)
217 PRK04043 tolB translocation pr 93.7 0.77 1.7E-05 54.8 13.3 107 110-223 191-310 (419)
218 KOG0316 Conserved WD40 repeat- 93.6 0.36 7.7E-06 54.4 9.6 105 106-220 59-171 (307)
219 PF08450 SGL: SMP-30/Gluconola 93.5 5.1 0.00011 43.3 18.1 117 108-233 87-224 (246)
220 KOG2394 WD40 protein DMR-N9 [G 93.5 0.22 4.7E-06 60.7 8.2 86 108-203 292-384 (636)
221 KOG1007 WD repeat protein TSSC 93.4 0.8 1.7E-05 52.9 12.1 93 116-215 182-281 (370)
222 KOG0276 Vesicle coat complex C 93.4 0.49 1.1E-05 58.6 11.0 108 107-221 141-256 (794)
223 KOG4532 WD40-like repeat conta 93.4 0.71 1.5E-05 52.9 11.5 152 49-206 75-263 (344)
224 PF12894 Apc4_WD40: Anaphase-p 93.2 0.14 2.9E-06 44.3 4.4 31 193-223 11-42 (47)
225 KOG1963 WD40 repeat protein [G 93.1 0.78 1.7E-05 58.4 12.5 119 109-232 208-333 (792)
226 KOG4328 WD40 protein [Function 93.0 0.57 1.2E-05 56.4 10.6 110 107-219 187-306 (498)
227 KOG1273 WD40 repeat protein [G 93.0 0.56 1.2E-05 54.6 10.2 111 101-221 20-138 (405)
228 PF15492 Nbas_N: Neuroblastoma 93.0 0.74 1.6E-05 52.8 11.0 105 108-213 45-167 (282)
229 PF08450 SGL: SMP-30/Gluconola 93.0 4.5 9.9E-05 43.7 16.7 108 109-222 42-164 (246)
230 KOG3621 WD40 repeat-containing 93.0 0.3 6.6E-06 61.0 8.6 105 108-219 35-151 (726)
231 PF15390 DUF4613: Domain of un 92.8 1.2 2.6E-05 55.4 13.0 112 119-233 74-195 (671)
232 KOG0642 Cell-cycle nuclear pro 92.7 0.47 1E-05 58.1 9.6 137 107-253 295-450 (577)
233 KOG2321 WD40 repeat protein [G 92.7 0.66 1.4E-05 57.2 10.7 122 113-256 143-282 (703)
234 KOG2041 WD40 repeat protein [G 92.7 0.33 7.2E-06 60.7 8.3 190 50-255 18-219 (1189)
235 KOG2919 Guanine nucleotide-bin 92.6 0.77 1.7E-05 53.6 10.5 111 109-220 52-185 (406)
236 KOG2314 Translation initiation 92.5 3.4 7.5E-05 51.2 16.1 138 114-266 401-558 (698)
237 COG4946 Uncharacterized protei 92.4 1.4 3E-05 53.6 12.6 101 107-215 360-465 (668)
238 KOG1963 WD40 repeat protein [G 92.3 1.5 3.2E-05 56.1 13.3 132 109-257 163-304 (792)
239 KOG2315 Predicted translation 92.2 3.2 6.9E-05 51.3 15.5 115 130-265 252-374 (566)
240 KOG4714 Nucleoporin [Nuclear s 92.2 0.25 5.5E-06 56.1 6.1 75 108-187 181-255 (319)
241 KOG1188 WD40 repeat protein [G 92.2 1.1 2.4E-05 52.6 11.1 137 109-257 73-223 (376)
242 KOG1009 Chromatin assembly com 92.0 1.3 2.8E-05 52.9 11.6 140 108-260 15-180 (434)
243 KOG1310 WD40 repeat protein [G 92.0 0.71 1.5E-05 56.6 9.8 108 106-219 50-175 (758)
244 PF12657 TFIIIC_delta: Transcr 91.9 0.61 1.3E-05 49.0 8.2 30 194-223 86-122 (173)
245 KOG0295 WD40 repeat-containing 91.6 3.5 7.6E-05 49.0 14.4 92 119-219 305-403 (406)
246 KOG1517 Guanine nucleotide bin 91.6 1.4 2.9E-05 57.7 11.9 178 25-222 1179-1381(1387)
247 KOG1009 Chromatin assembly com 91.1 0.61 1.3E-05 55.5 7.8 106 108-215 67-187 (434)
248 PF00400 WD40: WD domain, G-be 90.8 0.77 1.7E-05 35.9 5.8 30 154-184 10-39 (39)
249 KOG1920 IkappaB kinase complex 90.6 3.6 7.9E-05 54.6 14.5 147 107-264 110-308 (1265)
250 KOG1920 IkappaB kinase complex 90.5 1.9 4.2E-05 56.9 12.1 69 156-225 69-142 (1265)
251 KOG1007 WD repeat protein TSSC 90.3 1.5 3.3E-05 50.7 9.8 111 108-220 125-243 (370)
252 KOG1517 Guanine nucleotide bin 90.3 3 6.6E-05 54.7 13.3 127 99-229 1200-1340(1387)
253 PF04841 Vps16_N: Vps16, N-ter 90.3 9.6 0.00021 45.6 16.9 58 194-261 217-275 (410)
254 KOG0771 Prolactin regulatory e 90.2 4.7 0.0001 48.4 13.8 104 108-214 188-345 (398)
255 KOG4283 Transcription-coupled 89.9 1.1 2.5E-05 51.8 8.4 107 107-220 144-274 (397)
256 KOG1523 Actin-related protein 89.6 1.2 2.6E-05 52.0 8.4 65 156-221 11-84 (361)
257 COG5354 Uncharacterized protei 89.4 2.6 5.6E-05 51.7 11.3 163 47-212 42-293 (561)
258 PF10647 Gmad1: Lipoprotein Lp 89.1 9.5 0.00021 42.7 14.8 143 108-263 25-183 (253)
259 TIGR02658 TTQ_MADH_Hv methylam 88.5 5.4 0.00012 47.3 12.9 75 108-188 48-138 (352)
260 smart00320 WD40 WD40 repeats. 88.2 0.79 1.7E-05 32.0 3.8 26 194-219 13-39 (40)
261 COG4946 Uncharacterized protei 87.9 8.2 0.00018 47.4 13.9 97 157-266 361-463 (668)
262 KOG1240 Protein kinase contain 87.8 1.2 2.6E-05 58.8 7.5 70 154-223 1047-1129(1431)
263 PF08553 VID27: VID27 cytoplas 87.6 10 0.00022 49.3 15.4 159 47-223 431-607 (794)
264 KOG0292 Vesicle coat complex C 87.4 5 0.00011 52.1 12.2 118 104-225 133-281 (1202)
265 KOG1916 Nuclear protein, conta 87.2 0.88 1.9E-05 58.5 5.8 105 128-233 152-276 (1283)
266 KOG1275 PAB-dependent poly(A) 87.0 1.6 3.4E-05 56.4 7.7 104 111-221 220-341 (1118)
267 PLN02919 haloacid dehalogenase 87.0 6.3 0.00014 52.6 13.6 114 108-222 741-888 (1057)
268 KOG0290 Conserved WD40 repeat- 86.9 3.3 7.1E-05 48.2 9.5 147 100-264 93-261 (364)
269 PLN02919 haloacid dehalogenase 86.6 7.3 0.00016 52.0 13.9 118 108-225 684-836 (1057)
270 KOG0267 Microtubule severing p 86.0 0.57 1.2E-05 58.9 3.3 65 153-219 68-139 (825)
271 COG0823 TolB Periplasmic compo 86.0 2.5 5.3E-05 51.0 8.5 112 111-230 197-322 (425)
272 KOG4190 Uncharacterized conser 85.5 2.2 4.7E-05 52.5 7.6 104 108-220 786-904 (1034)
273 KOG4227 WD40 repeat protein [G 84.3 2.8 6.1E-05 50.0 7.6 100 108-211 151-262 (609)
274 PF12894 Apc4_WD40: Anaphase-p 84.1 2.2 4.8E-05 37.0 5.1 31 156-187 12-42 (47)
275 PF04053 Coatomer_WDAD: Coatom 84.1 12 0.00026 45.7 13.0 110 118-265 117-242 (443)
276 COG0823 TolB Periplasmic compo 84.1 2.6 5.7E-05 50.8 7.6 105 109-221 240-357 (425)
277 PF06977 SdiA-regulated: SdiA- 83.9 28 0.00062 39.5 15.0 106 107-220 22-145 (248)
278 TIGR02658 TTQ_MADH_Hv methylam 83.7 14 0.00031 43.9 13.1 112 113-229 200-338 (352)
279 KOG3881 Uncharacterized conser 83.6 9.1 0.0002 45.9 11.3 105 109-220 205-318 (412)
280 KOG4547 WD40 repeat-containing 83.2 8.3 0.00018 47.9 11.2 105 116-229 67-177 (541)
281 KOG0274 Cdc4 and related F-box 83.1 13 0.00029 46.3 13.1 111 108-231 333-451 (537)
282 PRK02888 nitrous-oxide reducta 82.7 25 0.00053 44.9 15.1 84 100-187 315-405 (635)
283 PF03178 CPSF_A: CPSF A subuni 82.3 38 0.00083 38.5 15.5 99 118-222 42-159 (321)
284 KOG0300 WD40 repeat-containing 82.3 5.3 0.00011 46.9 8.6 90 106-204 357-455 (481)
285 KOG2041 WD40 repeat protein [G 82.1 9 0.0002 48.9 10.9 114 107-222 15-145 (1189)
286 KOG2066 Vacuolar assembly/sort 82.0 11 0.00024 48.6 11.8 133 115-264 80-224 (846)
287 KOG0303 Actin-binding protein 81.1 7.8 0.00017 46.6 9.6 133 116-262 42-190 (472)
288 PF08596 Lgl_C: Lethal giant l 80.5 31 0.00067 41.6 14.5 109 108-220 3-171 (395)
289 KOG1310 WD40 repeat protein [G 80.4 2.8 6.1E-05 51.8 5.9 110 108-220 95-229 (758)
290 KOG2114 Vacuolar assembly/sort 79.8 57 0.0012 42.9 16.9 156 36-222 115-273 (933)
291 KOG3881 Uncharacterized conser 79.2 20 0.00043 43.3 12.0 94 157-260 204-305 (412)
292 PF14783 BBS2_Mid: Ciliary BBS 78.2 65 0.0014 33.1 13.7 97 109-217 2-109 (111)
293 PF04841 Vps16_N: Vps16, N-ter 77.6 17 0.00037 43.6 11.2 98 112-223 184-288 (410)
294 KOG0281 Beta-TrCP (transducin 77.6 9.5 0.00021 45.4 8.7 99 111-221 240-347 (499)
295 smart00320 WD40 WD40 repeats. 77.6 7 0.00015 27.0 5.1 28 156-184 13-40 (40)
296 PF03178 CPSF_A: CPSF A subuni 77.2 70 0.0015 36.5 15.5 102 108-220 90-200 (321)
297 COG5354 Uncharacterized protei 75.8 26 0.00056 43.6 11.9 68 156-224 275-350 (561)
298 PF07433 DUF1513: Protein of u 74.6 93 0.002 36.8 15.6 152 103-268 2-185 (305)
299 KOG4640 Anaphase-promoting com 73.9 13 0.00029 46.9 9.1 87 108-203 22-115 (665)
300 PF08728 CRT10: CRT10; InterP 73.4 66 0.0014 41.9 15.2 168 48-220 40-244 (717)
301 KOG0300 WD40 repeat-containing 72.8 38 0.00082 40.3 11.8 137 106-257 314-456 (481)
302 KOG1272 WD40-repeat-containing 72.6 12 0.00025 46.0 8.0 104 108-220 253-360 (545)
303 KOG0322 G-protein beta subunit 72.1 19 0.00042 41.8 9.2 50 170-219 265-320 (323)
304 PF12234 Rav1p_C: RAVE protein 72.0 58 0.0012 41.8 14.2 113 100-221 25-155 (631)
305 KOG1354 Serine/threonine prote 71.7 6.6 0.00014 46.7 5.6 152 109-265 167-349 (433)
306 PF14781 BBS2_N: Ciliary BBSom 71.7 48 0.0011 35.1 11.3 99 123-223 14-126 (136)
307 PF02897 Peptidase_S9_N: Proly 70.9 2.2E+02 0.0048 33.5 21.0 96 108-214 80-190 (414)
308 KOG1645 RING-finger-containing 70.3 19 0.00041 43.7 9.0 87 128-220 172-264 (463)
309 PF10647 Gmad1: Lipoprotein Lp 70.0 89 0.0019 35.2 13.8 117 108-229 67-204 (253)
310 KOG0642 Cell-cycle nuclear pro 69.9 5.1 0.00011 49.7 4.4 64 155-219 294-371 (577)
311 KOG0649 WD40 repeat protein [G 68.0 20 0.00043 41.3 8.1 107 109-220 13-142 (325)
312 KOG0322 G-protein beta subunit 66.9 11 0.00024 43.7 6.0 70 108-185 253-322 (323)
313 COG3386 Gluconolactonase [Carb 66.8 26 0.00056 40.9 9.1 30 109-138 165-194 (307)
314 KOG0280 Uncharacterized conser 66.6 27 0.00058 41.1 9.0 86 128-217 45-146 (339)
315 KOG0274 Cdc4 and related F-box 66.3 82 0.0018 39.7 13.8 85 128-222 310-400 (537)
316 KOG0281 Beta-TrCP (transducin 65.8 17 0.00037 43.4 7.3 102 108-220 279-386 (499)
317 KOG2079 Vacuolar assembly/sort 64.9 11 0.00024 49.9 6.1 52 170-221 101-159 (1206)
318 PF07569 Hira: TUP1-like enhan 64.3 34 0.00073 38.0 9.0 64 157-224 14-97 (219)
319 KOG2114 Vacuolar assembly/sort 63.8 81 0.0018 41.6 13.1 113 107-223 126-244 (933)
320 KOG1064 RAVE (regulator of V-A 63.8 11 0.00024 52.4 5.9 115 100-228 2246-2370(2439)
321 KOG2314 Translation initiation 63.0 36 0.00079 42.8 9.6 107 102-213 442-557 (698)
322 KOG3914 WD repeat protein WDR4 62.1 1.2E+02 0.0025 37.1 13.2 103 110-219 66-178 (390)
323 PF07676 PD40: WD40-like Beta 61.6 13 0.00028 29.8 4.0 20 195-214 10-29 (39)
324 KOG1912 WD40 repeat protein [G 57.5 53 0.0011 42.9 9.9 156 99-266 265-489 (1062)
325 PF12657 TFIIIC_delta: Transcr 57.2 8.3 0.00018 40.7 2.7 26 196-222 7-35 (173)
326 PRK13616 lipoprotein LpqB; Pro 57.2 96 0.0021 39.5 12.3 108 107-220 448-565 (591)
327 KOG4227 WD40 repeat protein [G 56.6 68 0.0015 39.1 10.0 111 108-220 58-177 (609)
328 PF07433 DUF1513: Protein of u 56.5 1.3E+02 0.0028 35.7 12.3 123 108-232 100-258 (305)
329 KOG1354 Serine/threonine prote 56.0 29 0.00063 41.6 6.9 80 108-188 27-118 (433)
330 KOG4714 Nucleoporin [Nuclear s 55.9 1.2E+02 0.0026 35.7 11.5 67 157-223 181-255 (319)
331 KOG1034 Transcriptional repres 54.4 58 0.0013 39.0 9.0 80 100-185 301-382 (385)
332 PF14783 BBS2_Mid: Ciliary BBS 54.4 66 0.0014 33.0 8.3 50 169-219 16-68 (111)
333 KOG4460 Nuclear pore complex, 53.7 66 0.0014 40.6 9.6 77 109-188 106-200 (741)
334 KOG3630 Nuclear pore complex, 50.9 63 0.0014 43.8 9.3 156 43-204 48-254 (1405)
335 PF14870 PSII_BNR: Photosynthe 50.8 3.2E+02 0.0069 32.3 14.2 105 108-223 146-261 (302)
336 KOG3617 WD40 and TPR repeat-co 50.6 17 0.00037 47.3 4.3 86 161-258 21-114 (1416)
337 PF13449 Phytase-like: Esteras 50.6 3.6E+02 0.0079 31.5 14.7 21 195-215 148-168 (326)
338 PRK14068 exodeoxyribonuclease 50.3 65 0.0014 31.0 7.1 60 753-823 4-63 (76)
339 PF07569 Hira: TUP1-like enhan 48.9 63 0.0014 35.9 7.9 75 107-186 13-95 (219)
340 COG3391 Uncharacterized conser 48.3 1.7E+02 0.0036 34.9 11.8 106 108-215 161-274 (381)
341 KOG1272 WD40-repeat-containing 47.2 27 0.00059 43.1 5.1 105 108-220 211-321 (545)
342 KOG0644 Uncharacterized conser 47.1 44 0.00096 43.8 7.0 114 108-233 192-311 (1113)
343 KOG2066 Vacuolar assembly/sort 46.9 67 0.0015 42.0 8.6 85 167-264 82-176 (846)
344 KOG3914 WD repeat protein WDR4 46.8 1.6E+02 0.0035 36.0 11.1 105 109-220 110-221 (390)
345 KOG3617 WD40 and TPR repeat-co 46.5 31 0.00068 45.2 5.6 105 109-222 18-131 (1416)
346 KOG0974 WD-repeat protein WDR6 45.0 1.3E+02 0.0028 40.4 10.7 106 105-219 174-285 (967)
347 KOG0974 WD-repeat protein WDR6 45.0 1.5E+02 0.0032 39.9 11.2 101 112-222 139-246 (967)
348 PF06977 SdiA-regulated: SdiA- 44.5 61 0.0013 37.0 7.1 59 193-262 21-81 (248)
349 smart00036 CNH Domain found in 43.6 5.8E+02 0.013 29.6 19.5 179 61-263 15-220 (302)
350 PF13360 PQQ_2: PQQ-like domai 41.3 3.8E+02 0.0082 28.3 12.0 104 117-230 35-149 (238)
351 KOG1334 WD40 repeat protein [G 40.2 59 0.0013 40.5 6.5 117 108-228 338-472 (559)
352 PRK09841 cryptic autophosphory 39.9 1.6E+02 0.0034 38.2 10.6 75 871-965 314-389 (726)
353 PF00930 DPPIV_N: Dipeptidyl p 39.7 69 0.0015 37.3 6.8 46 175-220 20-69 (353)
354 PF07995 GSDH: Glucose / Sorbo 38.7 4.1E+02 0.0089 31.1 12.8 96 108-209 3-129 (331)
355 KOG2079 Vacuolar assembly/sort 38.2 1.9E+02 0.0042 39.3 10.8 52 108-165 132-185 (1206)
356 PF09862 DUF2089: Protein of u 37.9 36 0.00078 35.0 3.7 49 752-800 47-106 (113)
357 PRK14064 exodeoxyribonuclease 36.2 1.3E+02 0.0028 28.9 6.8 61 752-823 3-63 (75)
358 PF10168 Nup88: Nuclear pore c 35.4 5.3E+02 0.012 34.0 14.1 100 119-220 42-177 (717)
359 PF10392 COG5: Golgi transport 35.3 1.2E+02 0.0026 31.2 7.0 69 749-822 34-107 (132)
360 TIGR01280 xseB exodeoxyribonuc 34.5 1.6E+02 0.0035 27.6 7.0 57 756-823 2-58 (67)
361 KOG1912 WD40 repeat protein [G 33.0 3.3E+02 0.0071 36.3 11.3 126 48-190 15-147 (1062)
362 PF06433 Me-amine-dh_H: Methyl 32.7 5.7E+02 0.012 31.1 12.7 101 109-219 97-210 (342)
363 KOG4532 WD40-like repeat conta 32.7 2.5E+02 0.0054 33.3 9.5 63 157-220 160-231 (344)
364 PF12234 Rav1p_C: RAVE protein 32.6 1.7E+02 0.0037 37.9 9.0 86 169-263 41-146 (631)
365 COG3204 Uncharacterized protei 32.1 66 0.0014 38.1 5.0 59 193-262 85-145 (316)
366 KOG4659 Uncharacterized conser 32.0 8.3E+02 0.018 34.7 14.9 69 52-125 480-551 (1899)
367 PRK02888 nitrous-oxide reducta 31.9 4.7E+02 0.01 34.1 12.5 117 100-221 229-403 (635)
368 PRK14069 exodeoxyribonuclease 31.8 1.4E+02 0.0031 30.0 6.5 56 755-821 8-63 (95)
369 COG3386 Gluconolactonase [Carb 30.6 4.4E+02 0.0095 31.1 11.3 74 159-232 166-253 (307)
370 PRK14806 bifunctional cyclohex 30.3 69 0.0015 41.0 5.2 62 775-837 217-297 (735)
371 KOG1897 Damage-specific DNA bi 30.2 3.7E+02 0.0081 36.6 11.4 51 175-225 506-571 (1096)
372 PF14870 PSII_BNR: Photosynthe 29.9 2.6E+02 0.0057 33.0 9.4 104 107-219 187-301 (302)
373 KOG4547 WD40 repeat-containing 29.5 2.2E+02 0.0047 36.2 9.0 99 118-221 5-131 (541)
374 KOG1008 Uncharacterized conser 27.7 48 0.001 42.4 3.1 89 112-205 201-315 (783)
375 TIGR02171 Fb_sc_TIGR02171 Fibr 27.6 2.3E+02 0.0049 38.1 9.1 55 169-223 319-384 (912)
376 KOG1645 RING-finger-containing 27.0 1.1E+02 0.0023 37.8 5.6 76 106-188 193-268 (463)
377 PRK14066 exodeoxyribonuclease 26.5 2.2E+02 0.0047 27.5 6.5 55 756-821 5-59 (75)
378 KOG0309 Conserved WD40 repeat- 26.3 85 0.0019 41.0 4.9 108 107-221 159-276 (1081)
379 KOG2695 WD40 repeat protein [G 26.0 1.5E+02 0.0032 36.0 6.5 135 61-215 266-410 (425)
380 PF14727 PHTB1_N: PTHB1 N-term 25.3 7E+02 0.015 30.9 12.1 92 129-220 196-316 (418)
381 PF08728 CRT10: CRT10; InterP 25.2 1E+03 0.022 31.8 13.9 130 48-185 102-245 (717)
382 COG3391 Uncharacterized conser 25.0 1.1E+03 0.023 28.4 13.3 111 108-225 75-193 (381)
383 KOG3621 WD40 repeat-containing 24.9 1.7E+02 0.0036 38.2 7.0 85 168-257 45-136 (726)
384 PF10313 DUF2415: Uncharacteri 24.4 1.5E+02 0.0033 26.0 4.6 34 108-141 2-38 (43)
385 COG5170 CDC55 Serine/threonine 24.1 1.4E+02 0.0031 35.7 5.8 95 108-205 28-138 (460)
386 PRK10115 protease 2; Provision 24.0 1.7E+03 0.037 29.1 17.0 103 109-220 129-253 (686)
387 KOG0280 Uncharacterized conser 23.6 7.7E+02 0.017 29.8 11.3 77 168-256 178-264 (339)
388 PRK14067 exodeoxyribonuclease 23.4 2.9E+02 0.0063 27.0 6.8 48 751-806 3-50 (80)
389 KOG0882 Cyclophilin-related pe 22.9 2.9E+02 0.0063 34.7 8.2 90 125-219 118-228 (558)
390 PF02897 Peptidase_S9_N: Proly 22.3 1.3E+03 0.029 27.2 18.4 120 109-232 229-368 (414)
391 KOG0489 Transcription factor z 22.2 47 0.001 38.0 1.6 38 871-941 164-204 (261)
392 PRK14063 exodeoxyribonuclease 22.2 2.9E+02 0.0064 26.6 6.5 56 755-821 5-60 (76)
393 COG4590 ABC-type uncharacteriz 22.1 4.1E+02 0.0089 33.6 9.2 101 117-219 279-383 (733)
394 KOG0882 Cyclophilin-related pe 22.0 3E+02 0.0065 34.6 8.1 109 108-223 55-175 (558)
395 PRK13614 lipoprotein LpqB; Pro 22.0 9.5E+02 0.021 31.0 12.7 77 108-186 435-518 (573)
396 COG5170 CDC55 Serine/threonine 21.7 1.1E+02 0.0024 36.6 4.4 112 109-225 175-312 (460)
397 PF00482 T2SF: Type II secreti 21.6 3.5E+02 0.0076 25.3 7.1 43 757-800 28-70 (124)
398 PRK14070 exodeoxyribonuclease 21.4 2.3E+02 0.005 27.0 5.6 51 762-823 2-52 (69)
399 cd09238 V_Alix_like_1 Protein- 21.4 2.5E+02 0.0055 33.2 7.3 76 754-833 23-116 (339)
400 smart00108 B_lectin Bulb-type 21.2 3.9E+02 0.0085 26.3 7.5 49 170-223 56-105 (114)
401 cd08915 V_Alix_like Protein-in 21.0 1.9E+02 0.0042 33.9 6.2 69 752-824 21-103 (342)
402 PRK00977 exodeoxyribonuclease 20.5 3.7E+02 0.0079 26.1 6.9 58 755-823 10-67 (80)
403 PF10395 Utp8: Utp8 family; I 20.4 1.6E+03 0.034 29.8 14.2 148 102-263 126-295 (670)
404 KOG2280 Vacuolar assembly/sort 20.2 1.7E+03 0.037 30.0 14.3 160 108-285 85-307 (829)
405 TIGR02604 Piru_Ver_Nterm putat 20.2 1.5E+03 0.032 26.9 13.7 137 107-262 14-200 (367)
No 1
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.5e-51 Score=493.48 Aligned_cols=382 Identities=18% Similarity=0.205 Sum_probs=296.9
Q ss_pred cccccceeecccceeeecCCccccccCCCC----CCCCCCCCCcceEeeCCcceEEEEEcCCc-eEEEEehHHHHHHhhc
Q 000733 11 EEIEGGRIESNDFFFDEIGESIPIIRDDDS----QFDLQNPPSLPLAVSQLSHQLIFAAHSSG-FCVARTNDVIDAAKEM 85 (1324)
Q Consensus 11 ~eVegEeI~TeDFgFK~Lgk~vslLRLfss----~~dLP~~~sSLLAVSN~K~GLvfAAgpdG-LvVarTsDLr~a~ksa 85 (1324)
++++-++-+++||+|+.+++ + |+|++ .+.+|...+|+|||+| +|||+||++..+ |.|+.|..|+-.....
T Consensus 6 ~d~~p~~~~s~df~f~~l~k-~---riF~Sfa~~~e~lp~~~sn~la~sn-~ysl~Fa~~nsk~L~vfgtknlLi~~it~ 80 (1405)
T KOG3630|consen 6 KDEVPTETGSEDFGFKFLGK-K---RIFPSFAALNEKLPFASSNNLAISN-SYSLFFAASNSKSLAVFGTKNLLIDHITS 80 (1405)
T ss_pred cccCCccccccchhheeccc-e---eeecccccccccCchhhhhhhhccc-ccceEEEecCCcceeeeccccceeecccc
Confidence 45566667799999999999 4 88887 5778888999999999 999999999888 8898888886544332
Q ss_pred -ccCCcccccccc-eeeeecCCCCCeeEEEEecCCCEEEEEeec-CCeEEEEEcccccCC---CCcceeEEec--CCCcc
Q 000733 86 -KENGTRCCVQEL-SVVDVPFENENVDILSLSNDESTLAVSLYQ-SPHIHFFSVHSLLNK---EIKPSFSCSL--NGSTY 157 (1324)
Q Consensus 86 -~en~tv~~~~dl-~vi~VPLp~s~VshLAFSsDEs~LAVcaes-Gg~L~VYDV~SLlng---~t~P~~sisL--n~st~ 157 (1324)
..|.+++..+.+ ..|++.++ +.|++++||...++|..++ |-.|.+||++.|.+- ...|++...+ +-...
T Consensus 81 D~~n~~Vd~~~~~t~~v~k~~p---i~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf 157 (1405)
T KOG3630|consen 81 DSTNSLVDADENLTFKVEKEIP---IVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVF 157 (1405)
T ss_pred cccccccccccccceeeecccc---ceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccc
Confidence 245444444332 12556666 8899999998877766654 779999999999875 4788888766 33467
Q ss_pred eEEEEecCCCCCeEEEEEeCCeEEEEEeCCCcee-----eecceeEEEeccCCCEEEEEecCc-eEEEccCccccccccc
Q 000733 158 VKDIRWRKKPENSFLALSNVGRLYRGGVNGPLED-----VMDNVDAVEWSVKGKFVAVAKKNV-LSILTSKLKERLPISL 231 (1324)
Q Consensus 158 VrdLaWNP~~aslLAVVSsDGsL~Vldl~e~lk~-----VasgVScVcWSPKGKQLVVGlaDG-IsQyTPDgeeKkvIP~ 231 (1324)
..++.|||....++|+|+.|+.|.|+.++..... +...++||||||||||+++|.+|| ++||+|.+++|++|||
T Consensus 158 ~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~ 237 (1405)
T KOG3630|consen 158 QLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPE 237 (1405)
T ss_pred cccccccCCccchhhhhccccchhhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecccceeecccC
Confidence 8899999999999999999999999988754322 346789999999999999999999 9999999999999999
Q ss_pred CccccCCCCCCCCceeEEEEEEecCCeEEEEEEeec-CCCCcceeEEEEEecCCCCccCCCCCCeEEeecccccccccCC
Q 000733 232 SFKSWVGDCDVNCSVKVDSIRWVRRDCIIIGCFQLT-EDGKEENYLVQVIQSKDGKITDASSEPVVLSFSDVFSDVIDDI 310 (1324)
Q Consensus 232 Pf~S~I~D~d~d~sV~V~SI~WLeNd~yLFg~vysa-eDgseEsYvV~IIrkKdgk~~~~~ss~tf~~F~D~~~~~~DDi 310 (1324)
|+. .. +++|.+|+||++.+|++.|...+ ++++++.|.+ .+.+.+ .+. +.+|.+.| |-.
T Consensus 238 Pp~------~e--~yrvl~v~Wl~t~eflvvy~n~ts~~~dpd~y~~-~~~k~k---p~g-----~~nF~E~~----d~t 296 (1405)
T KOG3630|consen 238 PPV------EE--NYRVLSVTWLSTQEFLVVYGNVTSETDDPDSYDQ-KMYKIK---PDG-----SANFQETF----DIT 296 (1405)
T ss_pred CCc------CC--CcceeEEEEecceeEEEEecccccCcCCchhhhh-cccccc---Ccc-----eeeecccc----CCC
Confidence 961 11 57999999999966665554332 2333333543 222211 121 88999998 333
Q ss_pred CCCCCc---ceEEEeeecccc-----EEEEEecCcccceeEEe--eeccccCCCcceeeeccCCCccceeeCCCCCC-Cc
Q 000733 311 LPSGTG---PYLFLTYVERWG-----LAISANRKNIDDHVVLL--RWSLDDEKNDIAVVDINRDKWIPRIKLQDNGN-DN 379 (1324)
Q Consensus 311 ~PFGsg---P~~yl~~L~dWd-----LL~VASSaStDIgIL~~--~W~L~D~~~~~~vlEi~DDS~RAeLPLTED~D-DT 379 (1324)
.|||-. ||||+.+|.+|+ |+||+|++|+||+||+. +|...- .+|..||+||+++..| ||
T Consensus 297 ppfg~~~rq~h~y~~~L~~W~~~~~~vVvvansaSsEvsila~~~qW~~w~----------~vde~ra~LP~s~k~d~Dt 366 (1405)
T KOG3630|consen 297 PPFGQIVRQPHMYKVTLSGWIEPDANVVVVANSASSEVSILASMKQWIEWS----------QVDEKRAVLPISEKTDKDT 366 (1405)
T ss_pred CCccccCccchhHHHhhhhhcccccceEEEecccccchhhhhhhcceeecc----------ccccceeeecccccCCCCC
Confidence 458754 899999999998 99999999999999863 343221 2336899999998767 99
Q ss_pred ceeEEEEEecCCCceeeecCCCCc-ccCCCceEEEEEcCCccEEEEEEEeccCCCC
Q 000733 380 LIMGLCIDKVSLCGKVKVQLGVEE-KELSPYFILMCLTLDGKLNMFHVASVSGPSC 434 (1324)
Q Consensus 380 ~PIGLALDLSSTe~kVevpIg~DE-~eLPPlPiL~VLTnEGvL~sw~VVnL~~~~~ 434 (1324)
.|||+|+|++.++ ++.++.|. ..++|+|+||||||||+||++|+++......
T Consensus 367 ~PigVaVD~t~td---eIl~p~dg~~t~~PlPlV~~lnnDg~l~~~y~I~~aaa~s 419 (1405)
T KOG3630|consen 367 NPIGVAVDVTTTD---EILEPCDGVDTIEPLPLVYILNNDGSLQIVYLIHVAAAKS 419 (1405)
T ss_pred CcceEEEEeeecc---eEecCCCcccccCCCceEEEEcCCCceeEEEEEeeccccc
Confidence 9999999999976 44445443 6799999999999999999999998876543
No 2
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.21 E-value=4.3e-11 Score=139.71 Aligned_cols=91 Identities=16% Similarity=0.316 Sum_probs=78.3
Q ss_pred CCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEEEEeCCC-----ceeeecceeEEEeccCCCEEEEEecCc-e
Q 000733 143 EIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGGVNGP-----LEDVMDNVDAVEWSVKGKFVAVAKKNV-L 216 (1324)
Q Consensus 143 ~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl~e~-----lk~VasgVScVcWSPKGKQLVVGlaDG-I 216 (1324)
..+|++.|.+.. ..|+.++++| ....+|+|+.||.|+|+|+... ++-+..+..|||||||||+||+|.+|. |
T Consensus 279 ~rNPv~~w~~~~-g~in~f~FS~-DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLV 356 (636)
T KOG2394|consen 279 TRNPVARWHIGE-GSINEFAFSP-DGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLV 356 (636)
T ss_pred cCCccceeEecc-ccccceeEcC-CCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceE
Confidence 458999999865 4899999999 4458999999999999999643 234468999999999999999999999 9
Q ss_pred EEEccCcccccccccC--ccccC
Q 000733 217 SILTSKLKERLPISLS--FKSWV 237 (1324)
Q Consensus 217 sQyTPDgeeKkvIP~P--f~S~I 237 (1324)
++| .+.++++|++- +++|+
T Consensus 357 tVw--Sf~erRVVARGqGHkSWV 377 (636)
T KOG2394|consen 357 TVW--SFEERRVVARGQGHKSWV 377 (636)
T ss_pred EEE--EeccceEEEeccccccce
Confidence 999 58999999885 77776
No 3
>PTZ00421 coronin; Provisional
Probab=98.97 E-value=4.1e-08 Score=116.94 Aligned_cols=114 Identities=12% Similarity=0.130 Sum_probs=89.0
Q ss_pred CCCeeEEEEec-CCCEEEEEeecCCeEEEEEccccc--CCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEE
Q 000733 106 NENVDILSLSN-DESTLAVSLYQSPHIHFFSVHSLL--NKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYR 182 (1324)
Q Consensus 106 ~s~VshLAFSs-DEs~LAVcaesGg~L~VYDV~SLl--ng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~V 182 (1324)
.+.|..|+|++ |+.+|+++.. ++.|.+|++..-. .....++..+. ++...|..++|+|...+.||..+.||++.|
T Consensus 75 ~~~V~~v~fsP~d~~~LaSgS~-DgtIkIWdi~~~~~~~~~~~~l~~L~-gH~~~V~~l~f~P~~~~iLaSgs~DgtVrI 152 (493)
T PTZ00421 75 EGPIIDVAFNPFDPQKLFTASE-DGTIMGWGIPEEGLTQNISDPIVHLQ-GHTKKVGIVSFHPSAMNVLASAGADMVVNV 152 (493)
T ss_pred CCCEEEEEEcCCCCCEEEEEeC-CCEEEEEecCCCccccccCcceEEec-CCCCcEEEEEeCcCCCCEEEEEeCCCEEEE
Confidence 45799999998 8888877764 5799999987521 11223444433 345789999999987778999999999999
Q ss_pred EEeCCCce--e---eecceeEEEeccCCCEEEEEecCc-eEEEcc
Q 000733 183 GGVNGPLE--D---VMDNVDAVEWSVKGKFVAVAKKNV-LSILTS 221 (1324)
Q Consensus 183 ldl~e~lk--~---VasgVScVcWSPKGKQLVVGlaDG-IsQyTP 221 (1324)
||+..+.. . +...|.|++|+|+|++||+|+.|| |.+|.+
T Consensus 153 WDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~ 197 (493)
T PTZ00421 153 WDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDP 197 (493)
T ss_pred EECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEEC
Confidence 99975421 1 236799999999999999999999 999965
No 4
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=98.62 E-value=4.5e-07 Score=111.68 Aligned_cols=152 Identities=16% Similarity=0.170 Sum_probs=110.5
Q ss_pred CCcceEeeCCcceEEEEEcCC-ceEEEEehHHHHHHhhcccCCcccccccceeeeecCCCCCeeEEEEecCCCEEEEEee
Q 000733 48 PSLPLAVSQLSHQLIFAAHSS-GFCVARTNDVIDAAKEMKENGTRCCVQELSVVDVPFENENVDILSLSNDESTLAVSLY 126 (1324)
Q Consensus 48 ~sSLLAVSN~K~GLvfAAgpd-GLvVarTsDLr~a~ksa~en~tv~~~~dl~vi~VPLp~s~VshLAFSsDEs~LAVcae 126 (1324)
+.+-++|+- ..-++++|+.+ +++|..+.|.-.. ..++.. ++.|.+|.|.+.+.+|||.+.
T Consensus 98 p~r~~~v~g-~g~~iaagsdD~~vK~~~~~D~s~~---------------~~lrgh---~apVl~l~~~p~~~fLAvss~ 158 (933)
T KOG1274|consen 98 PIRDLAVSG-SGKMIAAGSDDTAVKLLNLDDSSQE---------------KVLRGH---DAPVLQLSYDPKGNFLAVSSC 158 (933)
T ss_pred cceEEEEec-CCcEEEeecCceeEEEEeccccchh---------------eeeccc---CCceeeeeEcCCCCEEEEEec
Confidence 688899988 66677777654 5777766654211 111222 235999999999999999886
Q ss_pred cCCeEEEEEcccccCC----CCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEEEEeCCCc-------eeeecc
Q 000733 127 QSPHIHFFSVHSLLNK----EIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGGVNGPL-------EDVMDN 195 (1324)
Q Consensus 127 sGg~L~VYDV~SLlng----~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl~e~l-------k~Vasg 195 (1324)
+ |.|.||++.+..-. .+.|-... +....+..++|.|... .||+...|+.+.|++..+.. +.+.++
T Consensus 159 d-G~v~iw~~~~~~~~~tl~~v~k~n~~--~~s~i~~~~aW~Pk~g-~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~ 234 (933)
T KOG1274|consen 159 D-GKVQIWDLQDGILSKTLTGVDKDNEF--ILSRICTRLAWHPKGG-TLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSK 234 (933)
T ss_pred C-ceEEEEEcccchhhhhcccCCccccc--cccceeeeeeecCCCC-eEEeeccCCeEEEEccCCceeheeecccccccc
Confidence 6 68999999865432 22222221 1135678899999766 58888999999999986531 234577
Q ss_pred eeEEEeccCCCEEEEEecCc-eEEEccC
Q 000733 196 VDAVEWSVKGKFVAVAKKNV-LSILTSK 222 (1324)
Q Consensus 196 VScVcWSPKGKQLVVGlaDG-IsQyTPD 222 (1324)
++++.|||.|||||+++.|| |.+|.-+
T Consensus 235 ~~~~~wsPnG~YiAAs~~~g~I~vWnv~ 262 (933)
T KOG1274|consen 235 FSDLQWSPNGKYIAASTLDGQILVWNVD 262 (933)
T ss_pred eEEEEEcCCCcEEeeeccCCcEEEEecc
Confidence 99999999999999999999 9999543
No 5
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=98.60 E-value=2e-06 Score=85.83 Aligned_cols=105 Identities=16% Similarity=0.149 Sum_probs=79.5
Q ss_pred CCeeEEEEecCCCEEEEEeecCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEEEEeC
Q 000733 107 ENVDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGGVN 186 (1324)
Q Consensus 107 s~VshLAFSsDEs~LAVcaesGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl~ 186 (1324)
..+..++|++|+..|+++.. ++.|.+||++.. .+...+.. +...+..+.|+|+ ...+++...||.|++|++.
T Consensus 178 ~~i~~~~~~~~~~~l~~~~~-~~~i~i~d~~~~-----~~~~~~~~-~~~~i~~~~~~~~-~~~~~~~~~~~~i~i~~~~ 249 (289)
T cd00200 178 GEVNSVAFSPDGEKLLSSSS-DGTIKLWDLSTG-----KCLGTLRG-HENGVNSVAFSPD-GYLLASGSEDGTIRVWDLR 249 (289)
T ss_pred cccceEEECCCcCEEEEecC-CCcEEEEECCCC-----ceecchhh-cCCceEEEEEcCC-CcEEEEEcCCCcEEEEEcC
Confidence 36899999999988888776 578999998752 22222211 2247999999997 4455555569999999997
Q ss_pred CCc--ee---eecceeEEEeccCCCEEEEEecCc-eEEE
Q 000733 187 GPL--ED---VMDNVDAVEWSVKGKFVAVAKKNV-LSIL 219 (1324)
Q Consensus 187 e~l--k~---VasgVScVcWSPKGKQLVVGlaDG-IsQy 219 (1324)
... .. ....+.+++|+|+|+.|++|..|| |.+|
T Consensus 250 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw 288 (289)
T cd00200 250 TGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIW 288 (289)
T ss_pred CceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEec
Confidence 431 11 136799999999999999999999 8887
No 6
>PTZ00420 coronin; Provisional
Probab=98.60 E-value=2e-06 Score=104.49 Aligned_cols=119 Identities=9% Similarity=0.106 Sum_probs=87.9
Q ss_pred ecCCCCCeeEEEEecC-CCEEEEEeecCCeEEEEEccccc---CCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeC
Q 000733 102 VPFENENVDILSLSND-ESTLAVSLYQSPHIHFFSVHSLL---NKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNV 177 (1324)
Q Consensus 102 VPLp~s~VshLAFSsD-Es~LAVcaesGg~L~VYDV~SLl---ng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsD 177 (1324)
+..+...|..|+|+++ +.+||++.. ++.|++|++.+-- ..-..|...+. ++...|.+++|+|.....+|..+.|
T Consensus 70 L~gH~~~V~~lafsP~~~~lLASgS~-DgtIrIWDi~t~~~~~~~i~~p~~~L~-gH~~~V~sVaf~P~g~~iLaSgS~D 147 (568)
T PTZ00420 70 LKGHTSSILDLQFNPCFSEILASGSE-DLTIRVWEIPHNDESVKEIKDPQCILK-GHKKKISIIDWNPMNYYIMCSSGFD 147 (568)
T ss_pred EcCCCCCEEEEEEcCCCCCEEEEEeC-CCeEEEEECCCCCccccccccceEEee-cCCCcEEEEEECCCCCeEEEEEeCC
Confidence 3334457999999997 677777664 5799999997521 11122333322 3346899999999876666788899
Q ss_pred CeEEEEEeCCCcee----eecceeEEEeccCCCEEEEEecCc-eEEEccC
Q 000733 178 GRLYRGGVNGPLED----VMDNVDAVEWSVKGKFVAVAKKNV-LSILTSK 222 (1324)
Q Consensus 178 GsL~Vldl~e~lk~----VasgVScVcWSPKGKQLVVGlaDG-IsQyTPD 222 (1324)
|+|.|||+...... ....|.|++|+|+|+.||++..|| |.+|.+.
T Consensus 148 gtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~R 197 (568)
T PTZ00420 148 SFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPR 197 (568)
T ss_pred CeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECC
Confidence 99999999755221 136799999999999999999999 9999763
No 7
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=98.59 E-value=3.1e-06 Score=84.48 Aligned_cols=137 Identities=12% Similarity=0.100 Sum_probs=97.2
Q ss_pred CCeeEEEEecCCCEEEEEeecCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEEEEeC
Q 000733 107 ENVDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGGVN 186 (1324)
Q Consensus 107 s~VshLAFSsDEs~LAVcaesGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl~ 186 (1324)
+.|..++|++|+.+|+++.. ++.|.+|++.... +...+.. +...+..+.|+|.. ..+++++.||.+++|++.
T Consensus 10 ~~i~~~~~~~~~~~l~~~~~-~g~i~i~~~~~~~-----~~~~~~~-~~~~i~~~~~~~~~-~~l~~~~~~~~i~i~~~~ 81 (289)
T cd00200 10 GGVTCVAFSPDGKLLATGSG-DGTIKVWDLETGE-----LLRTLKG-HTGPVRDVAASADG-TYLASGSSDKTIRLWDLE 81 (289)
T ss_pred CCEEEEEEcCCCCEEEEeec-CcEEEEEEeeCCC-----cEEEEec-CCcceeEEEECCCC-CEEEEEcCCCeEEEEEcC
Confidence 47999999999998887765 4799999987431 2222222 23567899999976 578888999999999997
Q ss_pred CC--ceee---ecceeEEEeccCCCEEEEEecCc-eEEEccC-cccccccccCccccCCCCCCCCceeEEEEEEecCCeE
Q 000733 187 GP--LEDV---MDNVDAVEWSVKGKFVAVAKKNV-LSILTSK-LKERLPISLSFKSWVGDCDVNCSVKVDSIRWVRRDCI 259 (1324)
Q Consensus 187 e~--lk~V---asgVScVcWSPKGKQLVVGlaDG-IsQyTPD-geeKkvIP~Pf~S~I~D~d~d~sV~V~SI~WLeNd~y 259 (1324)
.. ...+ ...+.|++|+++|+.|++|..+| |.+|... ++....+. .+ .-.|.++.|..++.+
T Consensus 82 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~-----------~~~i~~~~~~~~~~~ 149 (289)
T cd00200 82 TGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLR-GH-----------TDWVNSVAFSPDGTF 149 (289)
T ss_pred cccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEec-cC-----------CCcEEEEEEcCcCCE
Confidence 53 2222 25799999999999999888899 9999654 33222222 11 124788889875545
Q ss_pred EEEE
Q 000733 260 IIGC 263 (1324)
Q Consensus 260 LFg~ 263 (1324)
+++.
T Consensus 150 l~~~ 153 (289)
T cd00200 150 VASS 153 (289)
T ss_pred EEEE
Confidence 5443
No 8
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=98.54 E-value=7.3e-06 Score=102.64 Aligned_cols=309 Identities=17% Similarity=0.244 Sum_probs=190.5
Q ss_pred ceEeeCCcceEEEEEcCC----ceEEEEehHHHHHHhhcccCCcccccccceeeeecCCCCCeeEEEEecCCCEEEEEee
Q 000733 51 PLAVSQLSHQLIFAAHSS----GFCVARTNDVIDAAKEMKENGTRCCVQELSVVDVPFENENVDILSLSNDESTLAVSLY 126 (1324)
Q Consensus 51 LLAVSN~K~GLvfAAgpd----GLvVarTsDLr~a~ksa~en~tv~~~~dl~vi~VPLp~s~VshLAFSsDEs~LAVcae 126 (1324)
.++|.-...|.-||.++. |.+|-+.+.|.+-.++.+++ . ...+| .+.=+.+-|.+|-||+||.+||+..+
T Consensus 16 IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~--l--~k~l~--~m~~h~~sv~CVR~S~dG~~lAsGSD 89 (942)
T KOG0973|consen 16 IFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNEN--L--PKHLC--TMDDHDGSVNCVRFSPDGSYLASGSD 89 (942)
T ss_pred EEEEEecCCceeEecCCccccccceeeccccccchhhhhhcc--c--chhhe--eeccccCceeEEEECCCCCeEeeccC
Confidence 555544357777777663 34577788887555444333 1 12222 23222347999999999999999885
Q ss_pred cCCeEEEEEccc------ccC-C---CCcceeEEec--CCCcceEEEEecCCCCCeEEEEEeCCeEEEEEeCCC--ce--
Q 000733 127 QSPHIHFFSVHS------LLN-K---EIKPSFSCSL--NGSTYVKDIRWRKKPENSFLALSNVGRLYRGGVNGP--LE-- 190 (1324)
Q Consensus 127 sGg~L~VYDV~S------Lln-g---~t~P~~sisL--n~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl~e~--lk-- 190 (1324)
. ..|.+|+-.. +-. | +.+....+.+ ++...|.|+.|+|+. .++|.|+.|+++.|||.... .+
T Consensus 90 D-~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~-~~lvS~s~DnsViiwn~~tF~~~~vl 167 (942)
T KOG0973|consen 90 D-RLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDD-SLLVSVSLDNSVIIWNAKTFELLKVL 167 (942)
T ss_pred c-ceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCc-cEEEEecccceEEEEccccceeeeee
Confidence 4 6889998773 111 1 2222222222 667899999999954 48999999999999998643 22
Q ss_pred -eeecceeEEEeccCCCEEEEEecCc-eEEEc-cCcccccccccCccccCCCCCCCCceeEEEEEEecCCeEEEEEEeec
Q 000733 191 -DVMDNVDAVEWSVKGKFVAVAKKNV-LSILT-SKLKERLPISLSFKSWVGDCDVNCSVKVDSIRWVRRDCIIIGCFQLT 267 (1324)
Q Consensus 191 -~VasgVScVcWSPKGKQLVVGlaDG-IsQyT-PDgeeKkvIP~Pf~S~I~D~d~d~sV~V~SI~WLeNd~yLFg~vysa 267 (1324)
.+.+-|.-+.|=|-||++|.=..|. |.+|. -+....+.|..||.+ ..+.-++.-+.|--...|+.. .++.
T Consensus 168 ~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~------~~~~T~f~RlSWSPDG~~las-~nA~ 240 (942)
T KOG0973|consen 168 RGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEE------SPLTTFFLRLSWSPDGHHLAS-PNAV 240 (942)
T ss_pred ecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhh------CCCcceeeecccCCCcCeecc-hhhc
Confidence 2347899999999999999999999 99996 566677889999832 234458999999766666533 3221
Q ss_pred CCCCcceeEEEEEecCCCCcc----CCCCCCeEEeec-ccccccccCCCCCCCc----c-eEEEeeeccccEEEEEecCc
Q 000733 268 EDGKEENYLVQVIQSKDGKIT----DASSEPVVLSFS-DVFSDVIDDILPSGTG----P-YLFLTYVERWGLAISANRKN 337 (1324)
Q Consensus 268 eDgseEsYvV~IIrkKdgk~~----~~~ss~tf~~F~-D~~~~~~DDi~PFGsg----P-~~yl~~L~dWdLL~VASSaS 337 (1324)
. ...+.+.|+.+...+.. .-.+.+++..|. -++ ..|..+| + ++| .|+-..|
T Consensus 241 n---~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lf------e~~~~ng~~~~~~~~y----------~i~AvgS 301 (942)
T KOG0973|consen 241 N---GGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLF------ERNNKNGTSTQPNCYY----------CIAAVGS 301 (942)
T ss_pred c---CCcceeEEEecCCceeeeeeecCCCceEEEEeChHHh------ccccccCCccCCCcce----------EEEEEec
Confidence 1 11234445554332210 001245566663 111 0122322 2 333 2233345
Q ss_pred ccceeEEeeeccccCCCcceeeeccCCCccceeeCCCCCCCcceeEEEEEecCCCceeeecCCCCcccCCCceEEEEEcC
Q 000733 338 IDDHVVLLRWSLDDEKNDIAVVDINRDKWIPRIKLQDNGNDNLIMGLCIDKVSLCGKVKVQLGVEEKELSPYFILMCLTL 417 (1324)
Q Consensus 338 tDIgIL~~~W~L~D~~~~~~vlEi~DDS~RAeLPLTED~DDT~PIGLALDLSSTe~kVevpIg~DE~eLPPlPiL~VLTn 417 (1324)
.|-.| ..|... +++ |+=++.++..+- .+...+..|. -.|++-+.
T Consensus 302 qDrSl--SVW~T~----------------~~R-----------Pl~vi~~lf~~S-I~DmsWspdG------~~LfacS~ 345 (942)
T KOG0973|consen 302 QDRSL--SVWNTA----------------LPR-----------PLFVIHNLFNKS-IVDMSWSPDG------FSLFACSL 345 (942)
T ss_pred CCccE--EEEecC----------------CCC-----------chhhhhhhhcCc-eeeeeEcCCC------CeEEEEec
Confidence 55555 236543 222 444566666643 4555565444 67899999
Q ss_pred CccEEEEEEEec
Q 000733 418 DGKLNMFHVASV 429 (1324)
Q Consensus 418 EGvL~sw~VVnL 429 (1324)
||.|..++|-.-
T Consensus 346 DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 346 DGTVALIHFEEK 357 (942)
T ss_pred CCeEEEEEcchH
Confidence 999999998643
No 9
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=98.54 E-value=3.1e-06 Score=99.99 Aligned_cols=176 Identities=19% Similarity=0.201 Sum_probs=121.2
Q ss_pred CCCCCCCcceEeeCCcceEEEEEcCCceEEEEehHHHHHHhhcccCCcccccccceeeeecCCCCCeeEEEEecCCCEEE
Q 000733 43 DLQNPPSLPLAVSQLSHQLIFAAHSSGFCVARTNDVIDAAKEMKENGTRCCVQELSVVDVPFENENVDILSLSNDESTLA 122 (1324)
Q Consensus 43 dLP~~~sSLLAVSN~K~GLvfAAgpdGLvVarTsDLr~a~ksa~en~tv~~~~dl~vi~VPLp~s~VshLAFSsDEs~LA 122 (1324)
+|..++. -|||.+ --++.++++-.++++.+- .. . +..+|+. =.+..+|+++|+...|
T Consensus 403 ~lg~QP~-~lav~~-d~~~avv~~~~~iv~l~~--~~---------~---------~~~~~~~-y~~s~vAv~~~~~~va 459 (603)
T KOG0318|consen 403 KLGSQPK-GLAVLS-DGGTAVVACISDIVLLQD--QT---------K---------VSSIPIG-YESSAVAVSPDGSEVA 459 (603)
T ss_pred ecCCCce-eEEEcC-CCCEEEEEecCcEEEEec--CC---------c---------ceeeccc-cccceEEEcCCCCEEE
Confidence 5555565 567777 566888888888776621 00 0 1222322 2488999999999998
Q ss_pred EEeecCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEEEEeCCCc------eeeecce
Q 000733 123 VSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGGVNGPL------EDVMDNV 196 (1324)
Q Consensus 123 VcaesGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl~e~l------k~VasgV 196 (1324)
|..+. +-||+|.+..... .... ..+.+-+.|.+++++|+.. +||++...|.+.+||+.... .++...|
T Consensus 460 VGG~D-gkvhvysl~g~~l---~ee~-~~~~h~a~iT~vaySpd~~-yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI 533 (603)
T KOG0318|consen 460 VGGQD-GKVHVYSLSGDEL---KEEA-KLLEHRAAITDVAYSPDGA-YLAAGDASRKVVLYDVASREVKTNRWAFHTAKI 533 (603)
T ss_pred Eeccc-ceEEEEEecCCcc---ccee-eeecccCCceEEEECCCCc-EEEEeccCCcEEEEEcccCceecceeeeeeeeE
Confidence 88866 5699998775322 1111 1123346899999999766 89999999999999997542 2345899
Q ss_pred eEEEeccCCCEEEEEecCc-eEEEccCcccccccccC-ccccCCCCCCCCceeEEEEEEecCCe
Q 000733 197 DAVEWSVKGKFVAVAKKNV-LSILTSKLKERLPISLS-FKSWVGDCDVNCSVKVDSIRWVRRDC 258 (1324)
Q Consensus 197 ScVcWSPKGKQLVVGlaDG-IsQyTPDgeeKkvIP~P-f~S~I~D~d~d~sV~V~SI~WLeNd~ 258 (1324)
.|++|||+.+.+|.|+-|- |.+|+-+--.+..+.+- + ...|..+.|+.++.
T Consensus 534 ~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~iknAH-----------~~gVn~v~wlde~t 586 (603)
T KOG0318|consen 534 NCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIKNAH-----------LGGVNSVAWLDEST 586 (603)
T ss_pred EEEEeCCCceEEEeccccceEEEEEccChhhheEecccc-----------ccCceeEEEecCce
Confidence 9999999999999999999 99995321112222221 2 22499999998763
No 10
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=98.46 E-value=2.4e-06 Score=90.22 Aligned_cols=108 Identities=19% Similarity=0.264 Sum_probs=79.2
Q ss_pred CeeEEEEecCCCEEEEEee-cCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEE---eCCeEEEE
Q 000733 108 NVDILSLSNDESTLAVSLY-QSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALS---NVGRLYRG 183 (1324)
Q Consensus 108 ~VshLAFSsDEs~LAVcae-sGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVS---sDGsL~Vl 183 (1324)
.|..+++++++..+||+.. ....|.+||++ ..+.+.+. ...++.+.|||... .+|+.. ..|.|.+|
T Consensus 61 ~I~~~~WsP~g~~favi~g~~~~~v~lyd~~------~~~i~~~~---~~~~n~i~wsP~G~-~l~~~g~~n~~G~l~~w 130 (194)
T PF08662_consen 61 PIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK------GKKIFSFG---TQPRNTISWSPDGR-FLVLAGFGNLNGDLEFW 130 (194)
T ss_pred ceEEEEECcCCCEEEEEEccCCcccEEEcCc------ccEeEeec---CCCceEEEECCCCC-EEEEEEccCCCcEEEEE
Confidence 5999999999999999873 23479999985 33444332 24678999999755 566553 35889999
Q ss_pred EeCCCceee----ecceeEEEeccCCCEEEEEec-------CceEEEccCcccc
Q 000733 184 GVNGPLEDV----MDNVDAVEWSVKGKFVAVAKK-------NVLSILTSKLKER 226 (1324)
Q Consensus 184 dl~e~lk~V----asgVScVcWSPKGKQLVVGla-------DGIsQyTPDgeeK 226 (1324)
|+.+. +.+ ...+++++|||+|++|+++.. ||+.+|.=.|...
T Consensus 131 d~~~~-~~i~~~~~~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~~l 183 (194)
T PF08662_consen 131 DVRKK-KKISTFEHSDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGRLL 183 (194)
T ss_pred ECCCC-EEeeccccCcEEEEEEcCCCCEEEEEEeccceeccccEEEEEecCeEe
Confidence 99754 332 357899999999999998863 4578886555543
No 11
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.41 E-value=6.4e-06 Score=96.99 Aligned_cols=144 Identities=15% Similarity=0.203 Sum_probs=104.1
Q ss_pred CCeeEEEEecCCCEEEEEeecCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEEEEeC
Q 000733 107 ENVDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGGVN 186 (1324)
Q Consensus 107 s~VshLAFSsDEs~LAVcaesGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl~ 186 (1324)
..|+-++|++|+.+|+.+. .+..|++||+.. +..-+..+. ++...|.++.|+|.. ++++.++.||+++|||+.
T Consensus 204 ~~v~~~~fs~d~~~l~s~s-~D~tiriwd~~~----~~~~~~~l~-gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~ 276 (456)
T KOG0266|consen 204 RGVSDVAFSPDGSYLLSGS-DDKTLRIWDLKD----DGRNLKTLK-GHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVR 276 (456)
T ss_pred cceeeeEECCCCcEEEEec-CCceEEEeeccC----CCeEEEEec-CCCCceEEEEecCCC-CEEEEecCCCcEEEEecc
Confidence 3699999999999777666 457999999821 122222222 556889999999988 899999999999999998
Q ss_pred CC--ce---eeecceeEEEeccCCCEEEEEecCc-eEEEccCcccccccccCccccCCCCCCCCceeEEEEEEecCCeEE
Q 000733 187 GP--LE---DVMDNVDAVEWSVKGKFVAVAKKNV-LSILTSKLKERLPISLSFKSWVGDCDVNCSVKVDSIRWVRRDCII 260 (1324)
Q Consensus 187 e~--lk---~VasgVScVcWSPKGKQLVVGlaDG-IsQyTPDgeeKkvIP~Pf~S~I~D~d~d~sV~V~SI~WLeNd~yL 260 (1324)
.. .+ .+.++|++++++++|.+|++|..|| |.+|......+.++..-. ...... .|..+.|-.+..|+
T Consensus 277 ~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~------~~~~~~-~~~~~~fsp~~~~l 349 (456)
T KOG0266|consen 277 TGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLS------GAENSA-PVTSVQFSPNGKYL 349 (456)
T ss_pred CCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeeccc------CCCCCC-ceeEEEECCCCcEE
Confidence 63 12 2348999999999999999999999 999977554433111100 001111 47788887787776
Q ss_pred EEEE
Q 000733 261 IGCF 264 (1324)
Q Consensus 261 Fg~v 264 (1324)
+...
T Consensus 350 l~~~ 353 (456)
T KOG0266|consen 350 LSAS 353 (456)
T ss_pred EEec
Confidence 6553
No 12
>PLN00181 protein SPA1-RELATED; Provisional
Probab=98.39 E-value=7.1e-06 Score=102.14 Aligned_cols=113 Identities=13% Similarity=0.187 Sum_probs=87.1
Q ss_pred CCCeeEEEEecCCCEEEEEeecCCeEEEEEcccccCC-C--CcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEE
Q 000733 106 NENVDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNK-E--IKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYR 182 (1324)
Q Consensus 106 ~s~VshLAFSsDEs~LAVcaesGg~L~VYDV~SLlng-~--t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~V 182 (1324)
...|..|+|++|+.+||++.. ++.|.+|++...... . ..|... +.+...|.++.|+|.....+|....||.+++
T Consensus 483 ~~~V~~i~fs~dg~~latgg~-D~~I~iwd~~~~~~~~~~~~~~~~~--~~~~~~v~~l~~~~~~~~~las~~~Dg~v~l 559 (793)
T PLN00181 483 SNLVCAIGFDRDGEFFATAGV-NKKIKIFECESIIKDGRDIHYPVVE--LASRSKLSGICWNSYIKSQVASSNFEGVVQV 559 (793)
T ss_pred CCcEEEEEECCCCCEEEEEeC-CCEEEEEECCcccccccccccceEE--ecccCceeeEEeccCCCCEEEEEeCCCeEEE
Confidence 346899999999999888774 468999998765432 1 123333 2223578999999987778999999999999
Q ss_pred EEeCCCc--ee---eecceeEEEecc-CCCEEEEEecCc-eEEEcc
Q 000733 183 GGVNGPL--ED---VMDNVDAVEWSV-KGKFVAVAKKNV-LSILTS 221 (1324)
Q Consensus 183 ldl~e~l--k~---VasgVScVcWSP-KGKQLVVGlaDG-IsQyTP 221 (1324)
||+.... .. +...|.|++|+| +|..|++|+.|| |.+|..
T Consensus 560 Wd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~ 605 (793)
T PLN00181 560 WDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSI 605 (793)
T ss_pred EECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEEC
Confidence 9997542 11 236899999997 799999999999 999953
No 13
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=98.36 E-value=1.2e-05 Score=85.02 Aligned_cols=137 Identities=16% Similarity=0.241 Sum_probs=93.4
Q ss_pred EEEEecCCCEEEEEeec---------CCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEE--eCCe
Q 000733 111 ILSLSNDESTLAVSLYQ---------SPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALS--NVGR 179 (1324)
Q Consensus 111 hLAFSsDEs~LAVcaes---------Gg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVS--sDGs 179 (1324)
.+..+++|.+|++.+.. .+...+|-++. ...|...+.+.....|.+++|+|+.. .||||. .++.
T Consensus 10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~----~~~~~~~i~l~~~~~I~~~~WsP~g~-~favi~g~~~~~ 84 (194)
T PF08662_consen 10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNE----KNIPVESIELKKEGPIHDVAWSPNGN-EFAVIYGSMPAK 84 (194)
T ss_pred EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEec----CCCccceeeccCCCceEEEEECcCCC-EEEEEEccCCcc
Confidence 34567888888777751 33455665532 24566777775445699999999765 688885 4678
Q ss_pred EEEEEeCCCc-eee-ecceeEEEeccCCCEEEEEec---Cc-eEEEccCcccccccccCccccCCCCCCCCceeEEEEEE
Q 000733 180 LYRGGVNGPL-EDV-MDNVDAVEWSVKGKFVAVAKK---NV-LSILTSKLKERLPISLSFKSWVGDCDVNCSVKVDSIRW 253 (1324)
Q Consensus 180 L~Vldl~e~l-k~V-asgVScVcWSPKGKQLVVGla---DG-IsQyTPDgeeKkvIP~Pf~S~I~D~d~d~sV~V~SI~W 253 (1324)
+.+||+.... ..+ ...+.+++|||+|+.||+|+- +| |.+|. ......|.... . ..+..+.|
T Consensus 85 v~lyd~~~~~i~~~~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd--~~~~~~i~~~~--------~---~~~t~~~W 151 (194)
T PF08662_consen 85 VTLYDVKGKKIFSFGTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWD--VRKKKKISTFE--------H---SDATDVEW 151 (194)
T ss_pred cEEEcCcccEeEeecCCCceEEEECCCCCEEEEEEccCCCcEEEEEE--CCCCEEeeccc--------c---CcEEEEEE
Confidence 9999997331 112 356778999999999998753 37 99994 44545554321 1 13678999
Q ss_pred ecCCeEEEEEEe
Q 000733 254 VRRDCIIIGCFQ 265 (1324)
Q Consensus 254 LeNd~yLFg~vy 265 (1324)
-.+..|++++..
T Consensus 152 sPdGr~~~ta~t 163 (194)
T PF08662_consen 152 SPDGRYLATATT 163 (194)
T ss_pred cCCCCEEEEEEe
Confidence 988888877653
No 14
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=98.34 E-value=5.4e-06 Score=91.95 Aligned_cols=106 Identities=14% Similarity=0.211 Sum_probs=82.2
Q ss_pred CeeEEEEecCCCEEEEEeecCCeEEEEEcccccCCCCcceeEEec-CCCcceEEEEecCCCCCeEEEEEeCCeEEEEEeC
Q 000733 108 NVDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSL-NGSTYVKDIRWRKKPENSFLALSNVGRLYRGGVN 186 (1324)
Q Consensus 108 ~VshLAFSsDEs~LAVcaesGg~L~VYDV~SLlng~t~P~~sisL-n~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl~ 186 (1324)
.++.||++|||..|+... .+..+.+|++.-+- -...+.. +++..|-|++|.|..++.||+.+.|.++.+||+.
T Consensus 22 ~v~Sv~wn~~g~~lasgs-~dktv~v~n~e~~r-----~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r 95 (313)
T KOG1407|consen 22 KVHSVAWNCDGTKLASGS-FDKTVSVWNLERDR-----FRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIR 95 (313)
T ss_pred cceEEEEcccCceeeecc-cCCceEEEEecchh-----hhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEec
Confidence 699999999999998766 45789999987551 1111111 3446899999999999999999999999999997
Q ss_pred CCcee--e--ecceeEEEeccCCCEEEEEecCc-eEEE
Q 000733 187 GPLED--V--MDNVDAVEWSVKGKFVAVAKKNV-LSIL 219 (1324)
Q Consensus 187 e~lk~--V--asgVScVcWSPKGKQLVVGlaDG-IsQy 219 (1324)
.+... + ..+=--++|||+|+|+++|.+|. |+.+
T Consensus 96 ~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~i 133 (313)
T KOG1407|consen 96 SGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFI 133 (313)
T ss_pred cCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEE
Confidence 55211 1 12334689999999999999999 8877
No 15
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.31 E-value=8.8e-06 Score=99.39 Aligned_cols=140 Identities=16% Similarity=0.250 Sum_probs=104.7
Q ss_pred CeeEEEEecCCCEEEEEeecCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEEEEeCC
Q 000733 108 NVDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGGVNG 187 (1324)
Q Consensus 108 ~VshLAFSsDEs~LAVcaesGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl~e 187 (1324)
-++.|.|++-+-.+++...++|.|..||++.= +.+..++. .+..|||++|+|...+.||.+...|.|..||+..
T Consensus 135 s~~~ldfh~tep~iliSGSQDg~vK~~DlR~~--~S~~t~~~----nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRq 208 (839)
T KOG0269|consen 135 SANKLDFHSTEPNILISGSQDGTVKCWDLRSK--KSKSTFRS----NSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQ 208 (839)
T ss_pred ceeeeeeccCCccEEEecCCCceEEEEeeecc--cccccccc----cchhhhceeeccCCCceEEEecCCceEEEeeccC
Confidence 47889999999999999988999999999963 34444443 3578999999999999999999999999999975
Q ss_pred Cc----e--eeecceeEEEeccCCCEEEEEecCc-eEEEccCcccccccccCccccCCCCCCCCceeEEEEEEecCCeEE
Q 000733 188 PL----E--DVMDNVDAVEWSVKGKFVAVAKKNV-LSILTSKLKERLPISLSFKSWVGDCDVNCSVKVDSIRWVRRDCII 260 (1324)
Q Consensus 188 ~l----k--~VasgVScVcWSPKGKQLVVGlaDG-IsQyTPDgeeKkvIP~Pf~S~I~D~d~d~sV~V~SI~WLeNd~yL 260 (1324)
.- + .+.+.|.|+.|+|.+..||.|+.|+ |.+|.-+...++.+-+ ......|--|.|=-...|.
T Consensus 209 p~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~t----------InTiapv~rVkWRP~~~~h 278 (839)
T KOG0269|consen 209 PDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHT----------INTIAPVGRVKWRPARSYH 278 (839)
T ss_pred chhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeE----------EeecceeeeeeeccCccch
Confidence 41 2 2348999999999999999999999 9999544322222111 1112356777885443354
Q ss_pred EEE
Q 000733 261 IGC 263 (1324)
Q Consensus 261 Fg~ 263 (1324)
++.
T Consensus 279 LAt 281 (839)
T KOG0269|consen 279 LAT 281 (839)
T ss_pred hhh
Confidence 444
No 16
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=98.27 E-value=1.1e-05 Score=92.31 Aligned_cols=152 Identities=15% Similarity=0.140 Sum_probs=108.9
Q ss_pred CCCCCCcceEeeCC-cceEEEEEcCCceEEE-EehHHHHHHhhcccCCcccccccceeeeecCCCCCeeEEEEecCCCEE
Q 000733 44 LQNPPSLPLAVSQL-SHQLIFAAHSSGFCVA-RTNDVIDAAKEMKENGTRCCVQELSVVDVPFENENVDILSLSNDESTL 121 (1324)
Q Consensus 44 LP~~~sSLLAVSN~-K~GLvfAAgpdGLvVa-rTsDLr~a~ksa~en~tv~~~~dl~vi~VPLp~s~VshLAFSsDEs~L 121 (1324)
+.+...+++|||-- .+-|++.|+++.+.-. ++. +.++ +..++.+..-|++++||.||.+|
T Consensus 60 F~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~-------------~ge~-----~~eltgHKDSVt~~~FshdgtlL 121 (399)
T KOG0296|consen 60 FDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDIS-------------TGEF-----AGELTGHKDSVTCCSFSHDGTLL 121 (399)
T ss_pred hhhcCCceEEEEeCCCCceEEecCCCceEEEEEcc-------------CCcc-----eeEecCCCCceEEEEEccCceEE
Confidence 34456778887641 4778888877764322 110 0011 13344455679999999999999
Q ss_pred EEEeecCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEEEEeCCC-c-eeee---cce
Q 000733 122 AVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGGVNGP-L-EDVM---DNV 196 (1324)
Q Consensus 122 AVcaesGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl~e~-l-k~Va---sgV 196 (1324)
|....+ |.|.||.+.+-. ...++. .....|.=|.|-| .++.|++-+.||+|++|.+.++ . +++. ..+
T Consensus 122 ATGdms-G~v~v~~~stg~--~~~~~~----~e~~dieWl~WHp-~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~c 193 (399)
T KOG0296|consen 122 ATGDMS-GKVLVFKVSTGG--EQWKLD----QEVEDIEWLKWHP-RAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPC 193 (399)
T ss_pred EecCCC-ccEEEEEcccCc--eEEEee----cccCceEEEEecc-cccEEEeecCCCcEEEEECCCcceeeEecCCCCCc
Confidence 998877 589999988632 222222 1224577889999 6678999999999999999864 2 3332 689
Q ss_pred eEEEeccCCCEEEEEecCc-eEEEcc
Q 000733 197 DAVEWSVKGKFVAVAKKNV-LSILTS 221 (1324)
Q Consensus 197 ScVcWSPKGKQLVVGlaDG-IsQyTP 221 (1324)
+|-++.|+||.|++|..|| |..|.|
T Consensus 194 t~G~f~pdGKr~~tgy~dgti~~Wn~ 219 (399)
T KOG0296|consen 194 TCGEFIPDGKRILTGYDDGTIIVWNP 219 (399)
T ss_pred ccccccCCCceEEEEecCceEEEEec
Confidence 9999999999999999999 999976
No 17
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=98.26 E-value=6.7e-06 Score=90.78 Aligned_cols=150 Identities=11% Similarity=0.126 Sum_probs=114.2
Q ss_pred CCCCCcceEeeCCcceEEEEEcCCceEEEEehHHHHHHhhcccCCcccccccceeeeecCCCCCeeEEEEecCCCEEEEE
Q 000733 45 QNPPSLPLAVSQLSHQLIFAAHSSGFCVARTNDVIDAAKEMKENGTRCCVQELSVVDVPFENENVDILSLSNDESTLAVS 124 (1324)
Q Consensus 45 P~~~sSLLAVSN~K~GLvfAAgpdGLvVarTsDLr~a~ksa~en~tv~~~~dl~vi~VPLp~s~VshLAFSsDEs~LAVc 124 (1324)
+-...|-|.|.+ .++.++||+-.-+.++ ||+. ..++ .+++...+..+|..|+|-+||..++..
T Consensus 39 ~dsqVNrLeiTp-dk~~LAaa~~qhvRly---D~~S----~np~---------Pv~t~e~h~kNVtaVgF~~dgrWMyTg 101 (311)
T KOG0315|consen 39 PDSQVNRLEITP-DKKDLAAAGNQHVRLY---DLNS----NNPN---------PVATFEGHTKNVTAVGFQCDGRWMYTG 101 (311)
T ss_pred CccceeeEEEcC-CcchhhhccCCeeEEE---EccC----CCCC---------ceeEEeccCCceEEEEEeecCeEEEec
Confidence 334689999999 9999999988887777 3321 1111 124455555589999999999999988
Q ss_pred eecCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEEEEeCCCc---eee---ecceeE
Q 000733 125 LYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGGVNGPL---EDV---MDNVDA 198 (1324)
Q Consensus 125 aesGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl~e~l---k~V---asgVSc 198 (1324)
.+. |.+.+||++++.-+ . .+ +. .++|+++..+|+..+ +++++++|.++|||+.+.. .++ ...|.+
T Consensus 102 seD-gt~kIWdlR~~~~q-R--~~--~~--~spVn~vvlhpnQte-Lis~dqsg~irvWDl~~~~c~~~liPe~~~~i~s 172 (311)
T KOG0315|consen 102 SED-GTVKIWDLRSLSCQ-R--NY--QH--NSPVNTVVLHPNQTE-LISGDQSGNIRVWDLGENSCTHELIPEDDTSIQS 172 (311)
T ss_pred CCC-ceEEEEeccCcccc-h--hc--cC--CCCcceEEecCCcce-EEeecCCCcEEEEEccCCccccccCCCCCcceee
Confidence 866 68999999996422 1 11 12 268999999999885 8899999999999998652 122 267888
Q ss_pred EEeccCCCEEEEEecCc-eEEEc
Q 000733 199 VEWSVKGKFVAVAKKNV-LSILT 220 (1324)
Q Consensus 199 VcWSPKGKQLVVGlaDG-IsQyT 220 (1324)
+.--|+|+.|+++..-| +..|.
T Consensus 173 l~v~~dgsml~a~nnkG~cyvW~ 195 (311)
T KOG0315|consen 173 LTVMPDGSMLAAANNKGNCYVWR 195 (311)
T ss_pred EEEcCCCcEEEEecCCccEEEEE
Confidence 88889999999999999 88884
No 18
>PLN00181 protein SPA1-RELATED; Provisional
Probab=98.23 E-value=7.6e-05 Score=93.21 Aligned_cols=154 Identities=11% Similarity=0.137 Sum_probs=100.2
Q ss_pred CcceEeeCCcceEEEEEcCCc-eEEEEehHHHHHHhhcccCCcccccccceeeeecCCCCCeeEEEEec-CCCEEEEEee
Q 000733 49 SLPLAVSQLSHQLIFAAHSSG-FCVARTNDVIDAAKEMKENGTRCCVQELSVVDVPFENENVDILSLSN-DESTLAVSLY 126 (1324)
Q Consensus 49 sSLLAVSN~K~GLvfAAgpdG-LvVarTsDLr~a~ksa~en~tv~~~~dl~vi~VPLp~s~VshLAFSs-DEs~LAVcae 126 (1324)
..-++.+. .-.+++.|+.+| +.|..+..... .. ... ...+..+.. .+.|..++|++ ++.+||++..
T Consensus 486 V~~i~fs~-dg~~latgg~D~~I~iwd~~~~~~---~~--~~~-----~~~~~~~~~-~~~v~~l~~~~~~~~~las~~~ 553 (793)
T PLN00181 486 VCAIGFDR-DGEFFATAGVNKKIKIFECESIIK---DG--RDI-----HYPVVELAS-RSKLSGICWNSYIKSQVASSNF 553 (793)
T ss_pred EEEEEECC-CCCEEEEEeCCCEEEEEECCcccc---cc--ccc-----ccceEEecc-cCceeeEEeccCCCCEEEEEeC
Confidence 34455565 555677777666 56665433210 00 000 000112221 24688899986 4676666654
Q ss_pred cCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEEEEeCCCce--ee--ecceeEEEec
Q 000733 127 QSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGGVNGPLE--DV--MDNVDAVEWS 202 (1324)
Q Consensus 127 sGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl~e~lk--~V--asgVScVcWS 202 (1324)
++.|.+||+.+- +.+..+. .+...|.++.|+|.....|+..+.||.+++||+..... .+ ...|.|++|+
T Consensus 554 -Dg~v~lWd~~~~-----~~~~~~~-~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~ 626 (793)
T PLN00181 554 -EGVVQVWDVARS-----QLVTEMK-EHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFP 626 (793)
T ss_pred -CCeEEEEECCCC-----eEEEEec-CCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEEe
Confidence 579999998742 2222222 34467999999997777899999999999999975421 11 2588999994
Q ss_pred -cCCCEEEEEecCc-eEEEcc
Q 000733 203 -VKGKFVAVAKKNV-LSILTS 221 (1324)
Q Consensus 203 -PKGKQLVVGlaDG-IsQyTP 221 (1324)
+.|+.||+|..|| |.+|..
T Consensus 627 ~~~g~~latgs~dg~I~iwD~ 647 (793)
T PLN00181 627 SESGRSLAFGSADHKVYYYDL 647 (793)
T ss_pred CCCCCEEEEEeCCCeEEEEEC
Confidence 6799999999999 999954
No 19
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=98.17 E-value=0.00014 Score=82.65 Aligned_cols=135 Identities=19% Similarity=0.286 Sum_probs=101.3
Q ss_pred CeeEEEEecCCCEEEEEeecCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEEEEeC-
Q 000733 108 NVDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGGVN- 186 (1324)
Q Consensus 108 ~VshLAFSsDEs~LAVcaesGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl~- 186 (1324)
.|++-|++.|.+.+|||..+ ..|+||+... ++-=+++.+.+- +...|..+-|+|..+ .+..|..|.+=|||...
T Consensus 12 pitchAwn~drt~iAv~~~~-~evhiy~~~~--~~~w~~~htls~-Hd~~vtgvdWap~sn-rIvtcs~drnayVw~~~~ 86 (361)
T KOG1523|consen 12 PITCHAWNSDRTQIAVSPNN-HEVHIYSMLG--ADLWEPAHTLSE-HDKIVTGVDWAPKSN-RIVTCSHDRNAYVWTQPS 86 (361)
T ss_pred ceeeeeecCCCceEEeccCC-ceEEEEEecC--CCCceeceehhh-hCcceeEEeecCCCC-ceeEccCCCCccccccCC
Confidence 59999999999999999844 5999998653 222455554433 347899999999765 59999999999999883
Q ss_pred CC---ce----eeecceeEEEeccCCCEEEEEecCc-eEEEccCccc----ccccccCccccCCCCCCCCceeEEEEEEe
Q 000733 187 GP---LE----DVMDNVDAVEWSVKGKFVAVAKKNV-LSILTSKLKE----RLPISLSFKSWVGDCDVNCSVKVDSIRWV 254 (1324)
Q Consensus 187 e~---lk----~VasgVScVcWSPKGKQLVVGlaDG-IsQyTPDgee----KkvIP~Pf~S~I~D~d~d~sV~V~SI~WL 254 (1324)
++ .+ .+--.++||-|||++.-+|+|+.-- |.+..=+.+. .++|-+|.++ .|.++.|+
T Consensus 87 ~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirS-----------tv~sldWh 155 (361)
T KOG1523|consen 87 GGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRS-----------TVTSLDWH 155 (361)
T ss_pred CCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCcccc-----------ceeeeecc
Confidence 33 11 1236899999999999999998887 5554323332 5678888632 69999999
Q ss_pred cCCe
Q 000733 255 RRDC 258 (1324)
Q Consensus 255 eNd~ 258 (1324)
-|+.
T Consensus 156 pnnV 159 (361)
T KOG1523|consen 156 PNNV 159 (361)
T ss_pred CCcc
Confidence 9974
No 20
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=98.17 E-value=5.6e-05 Score=84.41 Aligned_cols=149 Identities=16% Similarity=0.248 Sum_probs=108.2
Q ss_pred ecCCCCCeeEEEEecC-CCEEEEEeecCCeEEEEEcccccCCCCcceeEEe--c--CCCcceEEEEecCCCCCeEEEEEe
Q 000733 102 VPFENENVDILSLSND-ESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCS--L--NGSTYVKDIRWRKKPENSFLALSN 176 (1324)
Q Consensus 102 VPLp~s~VshLAFSsD-Es~LAVcaesGg~L~VYDV~SLlng~t~P~~sis--L--n~st~VrdLaWNP~~aslLAVVSs 176 (1324)
++....++-.||+++- |..||.|.+. -.|++|++.+ ++. .+++ + .+-..||.++|+|... ++|..+=
T Consensus 10 ~~gh~~r~W~~awhp~~g~ilAscg~D-k~vriw~~~~---~~s---~~ck~vld~~hkrsVRsvAwsp~g~-~La~aSF 81 (312)
T KOG0645|consen 10 LSGHKDRVWSVAWHPGKGVILASCGTD-KAVRIWSTSS---GDS---WTCKTVLDDGHKRSVRSVAWSPHGR-YLASASF 81 (312)
T ss_pred ecCCCCcEEEEEeccCCceEEEeecCC-ceEEEEecCC---CCc---EEEEEeccccchheeeeeeecCCCc-EEEEeec
Confidence 3333447999999998 8999999865 5899999875 222 2222 2 2347899999999655 8999999
Q ss_pred CCeEEEEEeC-CCceee------ecceeEEEeccCCCEEEEEecCc-eEEEccCcccccccccCccccCCCCCCCCceeE
Q 000733 177 VGRLYRGGVN-GPLEDV------MDNVDAVEWSVKGKFVAVAKKNV-LSILTSKLKERLPISLSFKSWVGDCDVNCSVKV 248 (1324)
Q Consensus 177 DGsL~Vldl~-e~lk~V------asgVScVcWSPKGKQLVVGlaDG-IsQyTPDgeeKkvIP~Pf~S~I~D~d~d~sV~V 248 (1324)
|++..||.-. ...+.+ ...|.||+||+.|.+||..+.|- +.+|.-+ +-.++.|-. -+ .+....|
T Consensus 82 D~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~d--eddEfec~a--VL----~~HtqDV 153 (312)
T KOG0645|consen 82 DATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEID--EDDEFECIA--VL----QEHTQDV 153 (312)
T ss_pred cceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEec--CCCcEEEEe--ee----ccccccc
Confidence 9999999665 334433 37999999999999999999998 9999654 223333320 01 1233468
Q ss_pred EEEEEecCCeEEEEEEee
Q 000733 249 DSIRWVRRDCIIIGCFQL 266 (1324)
Q Consensus 249 ~SI~WLeNd~yLFg~vys 266 (1324)
-.+.|..+..+||.+.|.
T Consensus 154 K~V~WHPt~dlL~S~SYD 171 (312)
T KOG0645|consen 154 KHVIWHPTEDLLFSCSYD 171 (312)
T ss_pred cEEEEcCCcceeEEeccC
Confidence 899999887788999875
No 21
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=98.15 E-value=7.9e-06 Score=93.98 Aligned_cols=106 Identities=21% Similarity=0.214 Sum_probs=81.7
Q ss_pred CCCeeEEEEecCCCEEEEEeecCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEEEEe
Q 000733 106 NENVDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGGV 185 (1324)
Q Consensus 106 ~s~VshLAFSsDEs~LAVcaesGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl 185 (1324)
..-|.||.||+|+.++|.+... ..|.+|+.++-. .+.+++ ++=..|-+++|+-+.. +++-++.|-+|.||++
T Consensus 367 q~lVn~V~fSPd~r~IASaSFD-kSVkLW~g~tGk-----~lasfR-GHv~~VYqvawsaDsR-LlVS~SkDsTLKvw~V 438 (480)
T KOG0271|consen 367 QALVNHVSFSPDGRYIASASFD-KSVKLWDGRTGK-----FLASFR-GHVAAVYQVAWSADSR-LLVSGSKDSTLKVWDV 438 (480)
T ss_pred hhheeeEEECCCccEEEEeecc-cceeeeeCCCcc-----hhhhhh-hccceeEEEEeccCcc-EEEEcCCCceEEEEEe
Confidence 3468999999999988776654 689999977532 122222 1225789999977544 7888999999999999
Q ss_pred CCCcee------eecceeEEEeccCCCEEEEEecCc-eEEEc
Q 000733 186 NGPLED------VMDNVDAVEWSVKGKFVAVAKKNV-LSILT 220 (1324)
Q Consensus 186 ~e~lk~------VasgVScVcWSPKGKQLVVGlaDG-IsQyT 220 (1324)
... ++ +++.|-||.|||+|+.+|.|.+|- +.+|+
T Consensus 439 ~tk-Kl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 439 RTK-KLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred eee-eecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 754 22 358999999999999999999998 77774
No 22
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.13 E-value=2.6e-05 Score=90.56 Aligned_cols=115 Identities=17% Similarity=0.059 Sum_probs=87.2
Q ss_pred CCeeEEEEecCCCEEEEEeecCCeEEEEEcccccCCCCcceeEEec-CCCcceEEEEecCCCCCeEEEEEeCCeEEEEEe
Q 000733 107 ENVDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSL-NGSTYVKDIRWRKKPENSFLALSNVGRLYRGGV 185 (1324)
Q Consensus 107 s~VshLAFSsDEs~LAVcaesGg~L~VYDV~SLlng~t~P~~sisL-n~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl 185 (1324)
..|.++.||++|.|||.+... ...-+|.|..... ..-.+ ++ ++..+|.-+.|+|+.. .++.|..|-.+..||+
T Consensus 225 dEVWfl~FS~nGkyLAsaSkD-~Taiiw~v~~d~~--~kl~~--tlvgh~~~V~yi~wSPDdr-yLlaCg~~e~~~lwDv 298 (519)
T KOG0293|consen 225 DEVWFLQFSHNGKYLASASKD-STAIIWIVVYDVH--FKLKK--TLVGHSQPVSYIMWSPDDR-YLLACGFDEVLSLWDV 298 (519)
T ss_pred CcEEEEEEcCCCeeEeeccCC-ceEEEEEEecCcc--eeeee--eeecccCceEEEEECCCCC-eEEecCchHheeeccC
Confidence 379999999999999987744 3455566554322 11111 22 4557899999999776 6888999999999999
Q ss_pred CCCcee--e----ecceeEEEeccCCCEEEEEecCc-eEEEccCccccc
Q 000733 186 NGPLED--V----MDNVDAVEWSVKGKFVAVAKKNV-LSILTSKLKERL 227 (1324)
Q Consensus 186 ~e~lk~--V----asgVScVcWSPKGKQLVVGlaDG-IsQyTPDgeeKk 227 (1324)
..+... + ..-|+|.||.|+|+.+|+|+.|+ |..|.-||++..
T Consensus 299 ~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~ 347 (519)
T KOG0293|consen 299 DTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILG 347 (519)
T ss_pred CcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhh
Confidence 765322 2 35689999999999999999999 999988887644
No 23
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=98.07 E-value=6.4e-05 Score=89.27 Aligned_cols=148 Identities=16% Similarity=0.166 Sum_probs=108.2
Q ss_pred CCcceEeeCCcceEEEEEcCCc-eEEEEehHHHHHHhhcccCCcccccccceeeeecCCCCCeeEEEEecCCCEEEEEee
Q 000733 48 PSLPLAVSQLSHQLIFAAHSSG-FCVARTNDVIDAAKEMKENGTRCCVQELSVVDVPFENENVDILSLSNDESTLAVSLY 126 (1324)
Q Consensus 48 ~sSLLAVSN~K~GLvfAAgpdG-LvVarTsDLr~a~ksa~en~tv~~~~dl~vi~VPLp~s~VshLAFSsDEs~LAVcae 126 (1324)
...-+||+. ..-.+++|+.+| +.|+.++..-- ++ +. ...+.+ +.|+.|++|+|+.+||+|..
T Consensus 445 ~~s~vAv~~-~~~~vaVGG~Dgkvhvysl~g~~l--~e-----------e~--~~~~h~-a~iT~vaySpd~~yla~~Da 507 (603)
T KOG0318|consen 445 ESSAVAVSP-DGSEVAVGGQDGKVHVYSLSGDEL--KE-----------EA--KLLEHR-AAITDVAYSPDGAYLAAGDA 507 (603)
T ss_pred ccceEEEcC-CCCEEEEecccceEEEEEecCCcc--cc-----------ee--eeeccc-CCceEEEECCCCcEEEEecc
Confidence 577899999 999999999887 77776553210 11 00 112222 35999999999999999997
Q ss_pred cCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEEEEeCCCceee------ecceeEEE
Q 000733 127 QSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGGVNGPLEDV------MDNVDAVE 200 (1324)
Q Consensus 127 sGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl~e~lk~V------asgVScVc 200 (1324)
+ +.+-+||+.+-.-+.. +|.. +.+.|.+++|+|+.. ++|.-+-|-+++||+++...+.+ ..+|..+.
T Consensus 508 ~-rkvv~yd~~s~~~~~~----~w~F-HtakI~~~aWsP~n~-~vATGSlDt~Viiysv~kP~~~i~iknAH~~gVn~v~ 580 (603)
T KOG0318|consen 508 S-RKVVLYDVASREVKTN----RWAF-HTAKINCVAWSPNNK-LVATGSLDTNVIIYSVKKPAKHIIIKNAHLGGVNSVA 580 (603)
T ss_pred C-CcEEEEEcccCceecc----eeee-eeeeEEEEEeCCCce-EEEeccccceEEEEEccChhhheEeccccccCceeEE
Confidence 6 5789999987543211 1222 237899999999765 79999999999999998775433 25799999
Q ss_pred eccCCCEEEEEecCc-eEEEc
Q 000733 201 WSVKGKFVAVAKKNV-LSILT 220 (1324)
Q Consensus 201 WSPKGKQLVVGlaDG-IsQyT 220 (1324)
|= +...||...+|- |..|.
T Consensus 581 wl-de~tvvSsG~Da~iK~W~ 600 (603)
T KOG0318|consen 581 WL-DESTVVSSGQDANIKVWN 600 (603)
T ss_pred Ee-cCceEEeccCcceeEEec
Confidence 94 555788888887 88884
No 24
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=8.1e-05 Score=84.20 Aligned_cols=161 Identities=12% Similarity=0.113 Sum_probs=110.7
Q ss_pred CCcceEeeCCcceEEEEEcCCceEEEEehHHHHHHhhcc-cCCcccccccceeeeecCC-------CCCeeEEEEecCCC
Q 000733 48 PSLPLAVSQLSHQLIFAAHSSGFCVARTNDVIDAAKEMK-ENGTRCCVQELSVVDVPFE-------NENVDILSLSNDES 119 (1324)
Q Consensus 48 ~sSLLAVSN~K~GLvfAAgpdGLvVarTsDLr~a~ksa~-en~tv~~~~dl~vi~VPLp-------~s~VshLAFSsDEs 119 (1324)
+.++|.+--.||--.|.||.+.|.-+...-+-+.+-+.. ++. +.+|++-.+ ....-..||.+.|+
T Consensus 81 tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~t-------vrLWDlR~~~cqg~l~~~~~pi~AfDp~GL 153 (311)
T KOG1446|consen 81 TIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKT-------VRLWDLRVKKCQGLLNLSGRPIAAFDPEGL 153 (311)
T ss_pred ceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCe-------EEeeEecCCCCceEEecCCCcceeECCCCc
Confidence 566777643277788888877655444444433333221 111 123333211 11445779999999
Q ss_pred EEEEEeecCCeEEEEEcccccCCCCcceeEEecC--CCcceEEEEecCCCCCeEEEEEeCCeEEEEEeCCCcee-----e
Q 000733 120 TLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLN--GSTYVKDIRWRKKPENSFLALSNVGRLYRGGVNGPLED-----V 192 (1324)
Q Consensus 120 ~LAVcaesGg~L~VYDV~SLlng~t~P~~sisLn--~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl~e~lk~-----V 192 (1324)
++|++...+ .|.+||++++- ..||.++.++ ......+|.++|+.. .+++.++++.++++|.-.+... .
T Consensus 154 ifA~~~~~~-~IkLyD~Rs~d---kgPF~tf~i~~~~~~ew~~l~FS~dGK-~iLlsT~~s~~~~lDAf~G~~~~tfs~~ 228 (311)
T KOG1446|consen 154 IFALANGSE-LIKLYDLRSFD---KGPFTTFSITDNDEAEWTDLEFSPDGK-SILLSTNASFIYLLDAFDGTVKSTFSGY 228 (311)
T ss_pred EEEEecCCC-eEEEEEecccC---CCCceeEccCCCCccceeeeEEcCCCC-EEEEEeCCCcEEEEEccCCcEeeeEeec
Confidence 999988443 99999999873 5677787773 347889999999765 6888889999999997554211 1
Q ss_pred e--cce-eEEEeccCCCEEEEEecCc-eEEEc
Q 000733 193 M--DNV-DAVEWSVKGKFVAVAKKNV-LSILT 220 (1324)
Q Consensus 193 a--sgV-ScVcWSPKGKQLVVGlaDG-IsQyT 220 (1324)
. .++ ..+|++|+||.|..|..|| |.+|-
T Consensus 229 ~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~ 260 (311)
T KOG1446|consen 229 PNAGNLPLSATFTPDSKFVLSGSDDGTIHVWN 260 (311)
T ss_pred cCCCCcceeEEECCCCcEEEEecCCCcEEEEE
Confidence 1 112 4799999999999999999 99994
No 25
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=98.04 E-value=3.8e-05 Score=92.26 Aligned_cols=146 Identities=16% Similarity=0.200 Sum_probs=105.7
Q ss_pred CCeeEEEEec-CCCEEEEEeecCCeEEEEEccccc--CCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEEE
Q 000733 107 ENVDILSLSN-DESTLAVSLYQSPHIHFFSVHSLL--NKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRG 183 (1324)
Q Consensus 107 s~VshLAFSs-DEs~LAVcaesGg~L~VYDV~SLl--ng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vl 183 (1324)
..|..++..+ |...|||+.. +|.|.+|.+.+-= .....|-..++.. +..|..|.|-|-.++.+|+.+.|-++.+|
T Consensus 628 t~vtDl~WdPFD~~rLAVa~d-dg~i~lWr~~a~gl~e~~~tPe~~lt~h-~eKI~slRfHPLAadvLa~asyd~Ti~lW 705 (1012)
T KOG1445|consen 628 TLVTDLHWDPFDDERLAVATD-DGQINLWRLTANGLPENEMTPEKILTIH-GEKITSLRFHPLAADVLAVASYDSTIELW 705 (1012)
T ss_pred ceeeecccCCCChHHeeeccc-CceEEEEEeccCCCCcccCCcceeeecc-cceEEEEEecchhhhHhhhhhccceeeee
Confidence 4677777776 7777888664 5799999987521 2255666666654 47899999999999999999999999999
Q ss_pred EeCCC---cee--eecceeEEEeccCCCEEEEEecCc-eEEEccCcccccccccCccccCCCCCCCCceeEEEEEEecCC
Q 000733 184 GVNGP---LED--VMDNVDAVEWSVKGKFVAVAKKNV-LSILTSKLKERLPISLSFKSWVGDCDVNCSVKVDSIRWVRRD 257 (1324)
Q Consensus 184 dl~e~---lk~--VasgVScVcWSPKGKQLVVGlaDG-IsQyTPDgeeKkvIP~Pf~S~I~D~d~d~sV~V~SI~WLeNd 257 (1324)
|+... .++ +.+++-.++|||+|.+||.-++|| |..|.|--.+...-..+ ..-..+-.-|.|.-.+
T Consensus 706 Dl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~---------gpvgtRgARi~wacdg 776 (1012)
T KOG1445|consen 706 DLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGK---------GPVGTRGARILWACDG 776 (1012)
T ss_pred ehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCC---------CCccCcceeEEEEecC
Confidence 99654 223 358999999999999999999999 99998843322221111 0001255678997666
Q ss_pred eEEEEE
Q 000733 258 CIIIGC 263 (1324)
Q Consensus 258 ~yLFg~ 263 (1324)
.|++.+
T Consensus 777 r~viv~ 782 (1012)
T KOG1445|consen 777 RIVIVV 782 (1012)
T ss_pred cEEEEe
Confidence 676544
No 26
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=98.01 E-value=5.7e-05 Score=79.30 Aligned_cols=119 Identities=15% Similarity=0.121 Sum_probs=81.1
Q ss_pred CeeEEEEecCCCEEEEEeecCCeEEEEEcccccCCCCcceeEEec--C----CCcceEEEEecCCCCCeEEEEEeCCeEE
Q 000733 108 NVDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSL--N----GSTYVKDIRWRKKPENSFLALSNVGRLY 181 (1324)
Q Consensus 108 ~VshLAFSsDEs~LAVcaesGg~L~VYDV~SLlng~t~P~~sisL--n----~st~VrdLaWNP~~aslLAVVSsDGsL~ 181 (1324)
.+.+++|++|+..|++....++.|.+||+.+... ...+.. . .......+.|+|+....++....++.+.
T Consensus 158 ~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~-----~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~ 232 (300)
T TIGR03866 158 RPRFAEFTADGKELWVSSEIGGTVSVIDVATRKV-----IKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVA 232 (300)
T ss_pred CccEEEECCCCCEEEEEcCCCCEEEEEEcCccee-----eeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEE
Confidence 5678999999999977765578999999986421 111111 0 0122346889997765555566678899
Q ss_pred EEEeCCCc--ee--eecceeEEEeccCCCEEEEEe-cCc-eEEEccC-ccccccccc
Q 000733 182 RGGVNGPL--ED--VMDNVDAVEWSVKGKFVAVAK-KNV-LSILTSK-LKERLPISL 231 (1324)
Q Consensus 182 Vldl~e~l--k~--VasgVScVcWSPKGKQLVVGl-aDG-IsQyTPD-geeKkvIP~ 231 (1324)
+||+.... .. ....+.+++|+|+|+.|+++. .+| |.+|..+ ++.++.|+.
T Consensus 233 v~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~ 289 (300)
T TIGR03866 233 VVDAKTYEVLDYLLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKV 289 (300)
T ss_pred EEECCCCcEEEEEEeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEc
Confidence 99986441 11 236789999999999999875 467 9999664 343455543
No 27
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.98 E-value=2.5e-05 Score=98.57 Aligned_cols=148 Identities=14% Similarity=0.163 Sum_probs=107.6
Q ss_pred CCeeEEEEecCCCE---EEEEeecCCeEEEEEcccccCC-CCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEE
Q 000733 107 ENVDILSLSNDEST---LAVSLYQSPHIHFFSVHSLLNK-EIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYR 182 (1324)
Q Consensus 107 s~VshLAFSsDEs~---LAVcaesGg~L~VYDV~SLlng-~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~V 182 (1324)
.+.+.|+..+-+.. |++....+|.|-+|+...++.+ ...-+.+.+.. ...|+.|.+||-..+.+|-..+||.++|
T Consensus 65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h-~G~V~gLDfN~~q~nlLASGa~~geI~i 143 (1049)
T KOG0307|consen 65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKH-TGPVLGLDFNPFQGNLLASGADDGEILI 143 (1049)
T ss_pred ccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhccc-CCceeeeeccccCCceeeccCCCCcEEE
Confidence 47888988876655 4665655689999999999655 44444444443 3689999999999999999999999999
Q ss_pred EEeCCCcee-------eecceeEEEeccCCCEE-EEEecCc-eEEEccCcccccccccCccccCCCCCCCCceeEEEEEE
Q 000733 183 GGVNGPLED-------VMDNVDAVEWSVKGKFV-AVAKKNV-LSILTSKLKERLPISLSFKSWVGDCDVNCSVKVDSIRW 253 (1324)
Q Consensus 183 ldl~e~lk~-------VasgVScVcWSPKGKQL-VVGlaDG-IsQyTPDgeeKkvIP~Pf~S~I~D~d~d~sV~V~SI~W 253 (1324)
||++...+- .-+.|.|++|-.|=.+| |.|..+| +++| |+..++.|=.- .+..+..++.+|.|
T Consensus 144 WDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iW--Dlr~~~pii~l-------s~~~~~~~~S~l~W 214 (1049)
T KOG0307|consen 144 WDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIW--DLRKKKPIIKL-------SDTPGRMHCSVLAW 214 (1049)
T ss_pred eccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceec--cccCCCccccc-------ccCCCccceeeeee
Confidence 999763211 23799999999997655 7788889 9999 67665433221 22334478999999
Q ss_pred ecCCeEEEEEE
Q 000733 254 VRRDCIIIGCF 264 (1324)
Q Consensus 254 LeNd~yLFg~v 264 (1324)
.-++.-.+.+.
T Consensus 215 hP~~aTql~~A 225 (1049)
T KOG0307|consen 215 HPDHATQLLVA 225 (1049)
T ss_pred CCCCceeeeee
Confidence 87764444443
No 28
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.96 E-value=9.4e-05 Score=87.36 Aligned_cols=108 Identities=16% Similarity=0.143 Sum_probs=82.7
Q ss_pred CCCeeEEEEecCCCEEEEEeecCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEEEEe
Q 000733 106 NENVDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGGV 185 (1324)
Q Consensus 106 ~s~VshLAFSsDEs~LAVcaesGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl 185 (1324)
...|+.++|+++++ |+++...++.|+|||++. .++...+.. +...|..+.++|+.. .++..+.||.|+|||+
T Consensus 246 ~~~v~~~~f~p~g~-~i~Sgs~D~tvriWd~~~-----~~~~~~l~~-hs~~is~~~f~~d~~-~l~s~s~d~~i~vwd~ 317 (456)
T KOG0266|consen 246 STYVTSVAFSPDGN-LLVSGSDDGTVRIWDVRT-----GECVRKLKG-HSDGISGLAFSPDGN-LLVSASYDGTIRVWDL 317 (456)
T ss_pred CCceEEEEecCCCC-EEEEecCCCcEEEEeccC-----CeEEEeeec-cCCceEEEEECCCCC-EEEEcCCCccEEEEEC
Confidence 45789999999995 555555678999999997 233333333 346899999999766 5666678999999999
Q ss_pred CCCce----ee---e-c-ceeEEEeccCCCEEEEEecCc-eEEEcc
Q 000733 186 NGPLE----DV---M-D-NVDAVEWSVKGKFVAVAKKNV-LSILTS 221 (1324)
Q Consensus 186 ~e~lk----~V---a-s-gVScVcWSPKGKQLVVGlaDG-IsQyTP 221 (1324)
..+.. .+ . . -|++++|||+|++|+++..|+ +.+|..
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l 363 (456)
T KOG0266|consen 318 ETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDL 363 (456)
T ss_pred CCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEc
Confidence 86642 11 1 2 579999999999999999999 999954
No 29
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=97.96 E-value=7.6e-05 Score=90.79 Aligned_cols=178 Identities=16% Similarity=0.095 Sum_probs=112.2
Q ss_pred cCCCCCCCCCCCCCcceEeeCCcceEEEEEcCCc-eEEEEehHHHHHHhhcccCC----cccccccceeeeecCCCCCee
Q 000733 36 RDDDSQFDLQNPPSLPLAVSQLSHQLIFAAHSSG-FCVARTNDVIDAAKEMKENG----TRCCVQELSVVDVPFENENVD 110 (1324)
Q Consensus 36 RLfss~~dLP~~~sSLLAVSN~K~GLvfAAgpdG-LvVarTsDLr~a~ksa~en~----tv~~~~dl~vi~VPLp~s~Vs 110 (1324)
||.|+|..+....+|-+.|++ -++|+|+.+| +.+++-+.|.=+-.-++.+. +..-.+.-.+-..+-+.-.+.
T Consensus 250 RLLDKWVqcRTTnAnCIcVs~---r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD 326 (1080)
T KOG1408|consen 250 RLLDKWVQCRTTNANCICVSS---RLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPD 326 (1080)
T ss_pred hhhhhhhhhhccccceeeeec---ceEEEeeccceeeecCcchhhhccccccccccccchhhcccccccccccCcccCCc
Confidence 678899989989999999999 4688888888 56666555532221111111 100000001111221212567
Q ss_pred EEEEecCCCE-EEEEeecCCeEEEEEcccccCC-CCcceeEEecCCCcceEEEEecC-C---------CCCeEEEEEeCC
Q 000733 111 ILSLSNDEST-LAVSLYQSPHIHFFSVHSLLNK-EIKPSFSCSLNGSTYVKDIRWRK-K---------PENSFLALSNVG 178 (1324)
Q Consensus 111 hLAFSsDEs~-LAVcaesGg~L~VYDV~SLlng-~t~P~~sisLn~st~VrdLaWNP-~---------~aslLAVVSsDG 178 (1324)
.||+.-|+.. -++|+.++-.|+||||+....- ..-.+ +-+++.|-++.--| + ....|..|++||
T Consensus 327 ~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~----lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~ 402 (1080)
T KOG1408|consen 327 AIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSM----LYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDG 402 (1080)
T ss_pred eeEEEecCCCceEEEEEcCceEEEEeccccccccceeee----eeccceeeeeccccccccCcccccCCccceeEecCCC
Confidence 7777777443 2556667789999999997531 11111 12345555554444 1 135899999999
Q ss_pred eEEEEEeCCC----c-----------eee---------------------------ecceeEEEeccCCCEEEEEecCc-
Q 000733 179 RLYRGGVNGP----L-----------EDV---------------------------MDNVDAVEWSVKGKFVAVAKKNV- 215 (1324)
Q Consensus 179 sL~Vldl~e~----l-----------k~V---------------------------asgVScVcWSPKGKQLVVGlaDG- 215 (1324)
++++|++... + +.+ ..|+.|+|-||+|++||.|..-|
T Consensus 403 TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~Gn 482 (1080)
T KOG1408|consen 403 TIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGN 482 (1080)
T ss_pred cEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCc
Confidence 9999998641 1 110 14899999999999999999999
Q ss_pred eEEEc
Q 000733 216 LSILT 220 (1324)
Q Consensus 216 IsQyT 220 (1324)
|.+|.
T Consensus 483 lrVy~ 487 (1080)
T KOG1408|consen 483 LRVYD 487 (1080)
T ss_pred eEEEE
Confidence 99993
No 30
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=97.95 E-value=0.003 Score=70.26 Aligned_cols=110 Identities=6% Similarity=0.022 Sum_probs=77.9
Q ss_pred CeeEEEEecCCCEEEEEeecCCeEEEEEcccccCCC-CcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEEEEeC
Q 000733 108 NVDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKE-IKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGGVN 186 (1324)
Q Consensus 108 ~VshLAFSsDEs~LAVcaesGg~L~VYDV~SLlng~-t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl~ 186 (1324)
.+.+|+|++|+.+|+++...++.|.+|++.. .+. ......+ .+......++++|+....|+....++.|+|||+.
T Consensus 81 ~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~--~g~~~~~~~~~--~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~ 156 (330)
T PRK11028 81 SPTHISTDHQGRFLFSASYNANCVSVSPLDK--DGIPVAPIQII--EGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLS 156 (330)
T ss_pred CceEEEECCCCCEEEEEEcCCCeEEEEEECC--CCCCCCceeec--cCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEEC
Confidence 5899999999999999987778999999863 121 1122221 1113456778899766556666778999999996
Q ss_pred CCcee-----------eecceeEEEeccCCCEEEEEec-Cc-eEEEcc
Q 000733 187 GPLED-----------VMDNVDAVEWSVKGKFVAVAKK-NV-LSILTS 221 (1324)
Q Consensus 187 e~lk~-----------VasgVScVcWSPKGKQLVVGla-DG-IsQyTP 221 (1324)
....+ ...+...+.|+|+|+.|++... ++ |..|.-
T Consensus 157 ~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~ 204 (330)
T PRK11028 157 DDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQL 204 (330)
T ss_pred CCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEE
Confidence 42111 1246678999999999988876 45 888864
No 31
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=97.93 E-value=7.7e-05 Score=88.47 Aligned_cols=111 Identities=17% Similarity=0.197 Sum_probs=81.5
Q ss_pred CeeEEEEecCCCEEEEEeecCCeEEEEEccccc-----CCCCcceeEE--ecCCCcceEEEEecCCCCCeEEEEEeCCeE
Q 000733 108 NVDILSLSNDESTLAVSLYQSPHIHFFSVHSLL-----NKEIKPSFSC--SLNGSTYVKDIRWRKKPENSFLALSNVGRL 180 (1324)
Q Consensus 108 ~VshLAFSsDEs~LAVcaesGg~L~VYDV~SLl-----ng~t~P~~si--sLn~st~VrdLaWNP~~aslLAVVSsDGsL 180 (1324)
.|..|++|..+..++|... .....+||-.-+. .|+ +-+.-+ +-++-+.|.+-.|+|...+.|+.|+.||+|
T Consensus 216 ~i~sl~ys~Tg~~iLvvsg-~aqakl~DRdG~~~~e~~KGD-QYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~Dgtl 293 (641)
T KOG0772|consen 216 QINSLQYSVTGDQILVVSG-SAQAKLLDRDGFEIVEFSKGD-QYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTL 293 (641)
T ss_pred ccceeeecCCCCeEEEEec-CcceeEEccCCceeeeeeccc-hhhhhhhccCCceeeeeccccccCcccceEEecCCCcE
Confidence 7889999986665544442 4578888866443 221 111111 113446788999999999999999999999
Q ss_pred EEEEeCCC---ceeee--------cceeEEEeccCCCEEEEEecCc-eEEEc
Q 000733 181 YRGGVNGP---LEDVM--------DNVDAVEWSVKGKFVAVAKKNV-LSILT 220 (1324)
Q Consensus 181 ~Vldl~e~---lk~Va--------sgVScVcWSPKGKQLVVGlaDG-IsQyT 220 (1324)
++||+... .+++. ..|++-+|+|+||.||+|..|| |.+|.
T Consensus 294 RiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~ 345 (641)
T KOG0772|consen 294 RIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWD 345 (641)
T ss_pred EEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeee
Confidence 99999754 23332 4778889999999999999999 99995
No 32
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=97.92 E-value=3.2e-05 Score=89.22 Aligned_cols=78 Identities=18% Similarity=0.244 Sum_probs=63.5
Q ss_pred CcceeEEec---CCCcceEEEEecCCCCCeEEEEEeCCeEEEEEeCCCc-----eeeecceeEEEeccCCCEEEEEecCc
Q 000733 144 IKPSFSCSL---NGSTYVKDIRWRKKPENSFLALSNVGRLYRGGVNGPL-----EDVMDNVDAVEWSVKGKFVAVAKKNV 215 (1324)
Q Consensus 144 t~P~~sisL---n~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl~e~l-----k~VasgVScVcWSPKGKQLVVGlaDG 215 (1324)
++|...++- +++..|.++.++|+.. .+|.-+-|-++++||+..+. +-+..-|.||+|||+||.||.|..||
T Consensus 101 vrpvtrCssS~~GH~e~Vl~~~fsp~g~-~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg 179 (480)
T KOG0271|consen 101 VRPVTRCSSSIAGHGEAVLSVQFSPTGS-RLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDG 179 (480)
T ss_pred ccccceeccccCCCCCcEEEEEecCCCc-eEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCC
Confidence 556666543 5678999999999544 68888889999999997552 22347999999999999999999999
Q ss_pred -eEEEccC
Q 000733 216 -LSILTSK 222 (1324)
Q Consensus 216 -IsQyTPD 222 (1324)
|.+|.|.
T Consensus 180 ~I~lwdpk 187 (480)
T KOG0271|consen 180 SIRLWDPK 187 (480)
T ss_pred eEEEecCC
Confidence 9999884
No 33
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=0.00015 Score=86.93 Aligned_cols=137 Identities=15% Similarity=0.093 Sum_probs=98.4
Q ss_pred CCeeEEEEecCCCEEEEEeecCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEE--EeCCeEEEEE
Q 000733 107 ENVDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLAL--SNVGRLYRGG 184 (1324)
Q Consensus 107 s~VshLAFSsDEs~LAVcaesGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVV--SsDGsL~Vld 184 (1324)
..|.-|++++|+.+||... ++..|.|||.. ...|...+.- +.+.|++++|+|-..++||+- +.|+.|..||
T Consensus 302 qeVCgLkws~d~~~lASGg-nDN~~~Iwd~~-----~~~p~~~~~~-H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn 374 (484)
T KOG0305|consen 302 QEVCGLKWSPDGNQLASGG-NDNVVFIWDGL-----SPEPKFTFTE-HTAAVKALAWCPWQSGLLATGGGSADRCIKFWN 374 (484)
T ss_pred ceeeeeEECCCCCeeccCC-CccceEeccCC-----CccccEEEec-cceeeeEeeeCCCccCceEEcCCCcccEEEEEE
Confidence 4677889999999998877 45789999972 2445444433 347899999999988888876 7899999999
Q ss_pred eCCCcee----eecceeEEEeccCCCEEEEEecCc---eEEEc-cCcccccccccCccccCCCCCCCCceeEEEEEEecC
Q 000733 185 VNGPLED----VMDNVDAVEWSVKGKFVAVAKKNV---LSILT-SKLKERLPISLSFKSWVGDCDVNCSVKVDSIRWVRR 256 (1324)
Q Consensus 185 l~e~lk~----VasgVScVcWSPKGKQLVVGlaDG---IsQyT-PDgeeKkvIP~Pf~S~I~D~d~d~sV~V~SI~WLeN 256 (1324)
...+..+ ...+|+.+.||++.|.|+++...+ |.+|+ |.++....+. ....+|..+.|=..
T Consensus 375 ~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~------------gH~~RVl~la~SPd 442 (484)
T KOG0305|consen 375 TNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELL------------GHTSRVLYLALSPD 442 (484)
T ss_pred cCCCcEecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeec------------CCcceeEEEEECCC
Confidence 9765221 248999999999999998876654 88886 4433222221 22347888887554
Q ss_pred CeEEEE
Q 000733 257 DCIIIG 262 (1324)
Q Consensus 257 d~yLFg 262 (1324)
..+++.
T Consensus 443 g~~i~t 448 (484)
T KOG0305|consen 443 GETIVT 448 (484)
T ss_pred CCEEEE
Confidence 444443
No 34
>PTZ00420 coronin; Provisional
Probab=97.90 E-value=0.0003 Score=86.01 Aligned_cols=128 Identities=10% Similarity=0.168 Sum_probs=83.3
Q ss_pred EecCCCEEEEEee--cCC---eEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEEEEeCCC
Q 000733 114 LSNDESTLAVSLY--QSP---HIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGGVNGP 188 (1324)
Q Consensus 114 FSsDEs~LAVcae--sGg---~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl~e~ 188 (1324)
+++...++|+.-. .|| .|.+|++.. ..++..+. ++...|.+++|+|...+.+|.++.||+++|||+...
T Consensus 34 ia~n~~~~A~~w~~~gGG~~gvI~L~~~~r-----~~~v~~L~-gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~ 107 (568)
T PTZ00420 34 IACSSGFVAVPWEVEGGGLIGAIRLENQMR-----KPPVIKLK-GHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHN 107 (568)
T ss_pred EeeCCCeEEEEEEcCCCCceeEEEeeecCC-----CceEEEEc-CCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCC
Confidence 4555556666442 244 355555432 23444333 445789999999987779999999999999999632
Q ss_pred ---ce-------e---eecceeEEEeccCCCEE-EEEecCc-eEEEccC-cccccccccCccccCCCCCCCCceeEEEEE
Q 000733 189 ---LE-------D---VMDNVDAVEWSVKGKFV-AVAKKNV-LSILTSK-LKERLPISLSFKSWVGDCDVNCSVKVDSIR 252 (1324)
Q Consensus 189 ---lk-------~---VasgVScVcWSPKGKQL-VVGlaDG-IsQyTPD-geeKkvIP~Pf~S~I~D~d~d~sV~V~SI~ 252 (1324)
.. . +...|.|++|+|.|..+ |+|+.|| |.+|... ++....+. + ...|.++.
T Consensus 108 ~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~--~-----------~~~V~Sls 174 (568)
T PTZ00420 108 DESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN--M-----------PKKLSSLK 174 (568)
T ss_pred CccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe--c-----------CCcEEEEE
Confidence 11 1 23689999999999876 6788999 9999543 22111221 1 12488999
Q ss_pred EecCCeEE
Q 000733 253 WVRRDCII 260 (1324)
Q Consensus 253 WLeNd~yL 260 (1324)
|-.+..++
T Consensus 175 wspdG~lL 182 (568)
T PTZ00420 175 WNIKGNLL 182 (568)
T ss_pred ECCCCCEE
Confidence 97655444
No 35
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=97.88 E-value=0.0003 Score=80.01 Aligned_cols=181 Identities=14% Similarity=0.117 Sum_probs=114.0
Q ss_pred CCCCCCCCcceEeeCCcceEEEEEcCC-ceEEEEehHHHHHHhhcccCCcccccccceeeeecCCCCCeeEEEEecCCC-
Q 000733 42 FDLQNPPSLPLAVSQLSHQLIFAAHSS-GFCVARTNDVIDAAKEMKENGTRCCVQELSVVDVPFENENVDILSLSNDES- 119 (1324)
Q Consensus 42 ~dLP~~~sSLLAVSN~K~GLvfAAgpd-GLvVarTsDLr~a~ksa~en~tv~~~~dl~vi~VPLp~s~VshLAFSsDEs- 119 (1324)
+..+....++=||+- ..-+++-|+.+ .+.|+ |++....- .. +-.+ .+.|+.|.|..+-+
T Consensus 37 F~~~aH~~sitavAV-s~~~~aSGssDetI~IY---Dm~k~~ql----------g~---ll~H--agsitaL~F~~~~S~ 97 (362)
T KOG0294|consen 37 FAFSAHAGSITALAV-SGPYVASGSSDETIHIY---DMRKRKQL----------GI---LLSH--AGSITALKFYPPLSK 97 (362)
T ss_pred ccccccccceeEEEe-cceeEeccCCCCcEEEE---eccchhhh----------cc---eecc--ccceEEEEecCCcch
Confidence 344555566655555 34445555443 46666 33332211 11 1122 23689999988775
Q ss_pred -EEEEEeecCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEEEEeCCC----ceeeec
Q 000733 120 -TLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGGVNGP----LEDVMD 194 (1324)
Q Consensus 120 -~LAVcaesGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl~e~----lk~Vas 194 (1324)
.|+.|.++ |.|.+|++.+..... +++- +...|++|.--|... +-+.|..|+.|..||+-.+ ...+..
T Consensus 98 shLlS~sdD-G~i~iw~~~~W~~~~-----slK~-H~~~Vt~lsiHPS~K-LALsVg~D~~lr~WNLV~Gr~a~v~~L~~ 169 (362)
T KOG0294|consen 98 SHLLSGSDD-GHIIIWRVGSWELLK-----SLKA-HKGQVTDLSIHPSGK-LALSVGGDQVLRTWNLVRGRVAFVLNLKN 169 (362)
T ss_pred hheeeecCC-CcEEEEEcCCeEEee-----eecc-cccccceeEecCCCc-eEEEEcCCceeeeehhhcCccceeeccCC
Confidence 67777655 799999999875432 1122 224588898888443 5557889999999998432 233457
Q ss_pred ceeEEEeccCCCEEEEEecCceEEEccCcc-cccccccCccccCCCCCCCCceeEEEEEEecCCeEEEE
Q 000733 195 NVDAVEWSVKGKFVAVAKKNVLSILTSKLK-ERLPISLSFKSWVGDCDVNCSVKVDSIRWVRRDCIIIG 262 (1324)
Q Consensus 195 gVScVcWSPKGKQLVVGlaDGIsQyTPDge-eKkvIP~Pf~S~I~D~d~d~sV~V~SI~WLeNd~yLFg 262 (1324)
..+.|.|+|+|.|.|++..|+|-+|.-+.. ..+.|.. +.++..+.|+.....++|
T Consensus 170 ~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~-------------~~r~l~~~~l~~~~L~vG 225 (362)
T KOG0294|consen 170 KATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIEN-------------PKRILCATFLDGSELLVG 225 (362)
T ss_pred cceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhc-------------cccceeeeecCCceEEEe
Confidence 788899999999999999999888854321 1222222 346888899877643344
No 36
>PTZ00421 coronin; Provisional
Probab=97.88 E-value=0.0003 Score=84.57 Aligned_cols=133 Identities=14% Similarity=0.159 Sum_probs=82.0
Q ss_pred EecCCCEEEEEeecCCeEEEEEcccccCC-CCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEEEEeCCCc---
Q 000733 114 LSNDESTLAVSLYQSPHIHFFSVHSLLNK-EIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGGVNGPL--- 189 (1324)
Q Consensus 114 FSsDEs~LAVcaesGg~L~VYDV~SLlng-~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl~e~l--- 189 (1324)
++++..++|+.-...|.+.++.....-.- ...|.. .++...|.+++|+|.....+|.++.||++++||+....
T Consensus 36 ~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l---~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~ 112 (493)
T PTZ00421 36 IACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPIL---LGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQ 112 (493)
T ss_pred EeECCceEEEEEecCCceEEeeccccccCCCCCceE---eCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCcccc
Confidence 44555555554433333455543332110 111221 24557899999999666689999999999999996421
Q ss_pred ------ee---eecceeEEEeccCC-CEEEEEecCc-eEEEccC-cccccccccCccccCCCCCCCCceeEEEEEEecCC
Q 000733 190 ------ED---VMDNVDAVEWSVKG-KFVAVAKKNV-LSILTSK-LKERLPISLSFKSWVGDCDVNCSVKVDSIRWVRRD 257 (1324)
Q Consensus 190 ------k~---VasgVScVcWSPKG-KQLVVGlaDG-IsQyTPD-geeKkvIP~Pf~S~I~D~d~d~sV~V~SI~WLeNd 257 (1324)
.. +...|.|++|+|.+ ..|++|..|| |.+|..+ ++....+.. ..-.|.+|.|-.+.
T Consensus 113 ~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~------------h~~~V~sla~spdG 180 (493)
T PTZ00421 113 NISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKC------------HSDQITSLEWNLDG 180 (493)
T ss_pred ccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcC------------CCCceEEEEEECCC
Confidence 11 13689999999986 6899999999 9999542 111111111 11248889997555
Q ss_pred eEEE
Q 000733 258 CIII 261 (1324)
Q Consensus 258 ~yLF 261 (1324)
.+++
T Consensus 181 ~lLa 184 (493)
T PTZ00421 181 SLLC 184 (493)
T ss_pred CEEE
Confidence 4443
No 37
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=97.88 E-value=0.00024 Score=83.84 Aligned_cols=140 Identities=14% Similarity=0.132 Sum_probs=96.6
Q ss_pred CCCeeEEEEecCCCEEEEEeecCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecC--------CCCCeEEEEEeC
Q 000733 106 NENVDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRK--------KPENSFLALSNV 177 (1324)
Q Consensus 106 ~s~VshLAFSsDEs~LAVcaesGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP--------~~aslLAVVSsD 177 (1324)
...|..|-+++-++.|+.|. .++.|.+|+...-.....-. .++..|..+.|+| ....++|.++.|
T Consensus 359 ~g~V~alk~n~tg~LLaS~S-dD~TlkiWs~~~~~~~~~l~------~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~d 431 (524)
T KOG0273|consen 359 HGEVNALKWNPTGSLLASCS-DDGTLKIWSMGQSNSVHDLQ------AHSKEIYTIKWSPTGPVTSNPNMNLMLASASFD 431 (524)
T ss_pred cCceEEEEECCCCceEEEec-CCCeeEeeecCCCcchhhhh------hhccceeeEeecCCCCccCCCcCCceEEEeecC
Confidence 44688899999999998887 45789999855322211100 1123344455555 455699999999
Q ss_pred CeEEEEEeCCCcee-----eecceeEEEeccCCCEEEEEecCc-eEEEccCcccccccccCccccCCCCCCCCceeEEEE
Q 000733 178 GRLYRGGVNGPLED-----VMDNVDAVEWSVKGKFVAVAKKNV-LSILTSKLKERLPISLSFKSWVGDCDVNCSVKVDSI 251 (1324)
Q Consensus 178 GsL~Vldl~e~lk~-----VasgVScVcWSPKGKQLVVGlaDG-IsQyTPDgeeKkvIP~Pf~S~I~D~d~d~sV~V~SI 251 (1324)
+++.+||+..++-. +..+|.++++||+|++||.|.-|| |.+|.- +..+.+.+ +.+++ -|-.+
T Consensus 432 stV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~--~~~~l~~s--------~~~~~--~Ifel 499 (524)
T KOG0273|consen 432 STVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWST--KTGKLVKS--------YQGTG--GIFEL 499 (524)
T ss_pred CeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccc--cchheeEe--------ecCCC--eEEEE
Confidence 99999999876432 238999999999999999999999 999942 22222221 11223 38899
Q ss_pred EEecCCeEEEEEE
Q 000733 252 RWVRRDCIIIGCF 264 (1324)
Q Consensus 252 ~WLeNd~yLFg~v 264 (1324)
+|=.++.++.+++
T Consensus 500 ~Wn~~G~kl~~~~ 512 (524)
T KOG0273|consen 500 CWNAAGDKLGACA 512 (524)
T ss_pred EEcCCCCEEEEEe
Confidence 9988877765554
No 38
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.86 E-value=0.00024 Score=85.25 Aligned_cols=182 Identities=19% Similarity=0.181 Sum_probs=121.5
Q ss_pred cCCCCCCCCCCC-CCcceEeeCCcceEEEEEcCCceEEEEehHHHHHHhhcccCCcccccccceeeeecCCCCCeeEEEE
Q 000733 36 RDDDSQFDLQNP-PSLPLAVSQLSHQLIFAAHSSGFCVARTNDVIDAAKEMKENGTRCCVQELSVVDVPFENENVDILSL 114 (1324)
Q Consensus 36 RLfss~~dLP~~-~sSLLAVSN~K~GLvfAAgpdGLvVarTsDLr~a~ksa~en~tv~~~~dl~vi~VPLp~s~VshLAF 114 (1324)
|+.|++. |..+ ..|||+=|+ .+.+++|-+..+++-. +... . +..++ ++- ...|+.|.+
T Consensus 167 rvLDaP~-l~dDfY~nlldWss--~n~laValg~~vylW~------~~s~---~-----v~~l~--~~~--~~~vtSv~w 225 (484)
T KOG0305|consen 167 RVLDAPG-LQDDFYLNLLDWSS--ANVLAVALGQSVYLWS------ASSG---S-----VTELC--SFG--EELVTSVKW 225 (484)
T ss_pred hhccCCc-ccccHhhhHhhccc--CCeEEEEecceEEEEe------cCCC---c-----eEEeE--ecC--CCceEEEEE
Confidence 3445543 4444 678888776 7888888877776641 1100 0 11111 221 247999999
Q ss_pred ecCCCEEEEEeecCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEEEEeCCC------
Q 000733 115 SNDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGGVNGP------ 188 (1324)
Q Consensus 115 SsDEs~LAVcaesGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl~e~------ 188 (1324)
+.||.+|||.... |.|.+||+..... +. ++...+...|-+|+|| .+.+.....||.+.++|+...
T Consensus 226 s~~G~~LavG~~~-g~v~iwD~~~~k~--~~---~~~~~h~~rvg~laW~---~~~lssGsr~~~I~~~dvR~~~~~~~~ 296 (484)
T KOG0305|consen 226 SPDGSHLAVGTSD-GTVQIWDVKEQKK--TR---TLRGSHASRVGSLAWN---SSVLSSGSRDGKILNHDVRISQHVVST 296 (484)
T ss_pred CCCCCEEEEeecC-CeEEEEehhhccc--cc---cccCCcCceeEEEecc---CceEEEecCCCcEEEEEEecchhhhhh
Confidence 9999999998855 6999999887532 22 2222245789999998 456777889999999998533
Q ss_pred ceeeecceeEEEeccCCCEEEEEecCc-eEEEccC-cccccccccCccccCCCCCCCCceeEEEEEEecCC
Q 000733 189 LEDVMDNVDAVEWSVKGKFVAVAKKNV-LSILTSK-LKERLPISLSFKSWVGDCDVNCSVKVDSIRWVRRD 257 (1324)
Q Consensus 189 lk~VasgVScVcWSPKGKQLVVGlaDG-IsQyTPD-geeKkvIP~Pf~S~I~D~d~d~sV~V~SI~WLeNd 257 (1324)
...+.+.|.-..||++|+|+|.|+.|. +.+|.-. .+.+.. + ....+.|++.+++|....
T Consensus 297 ~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~--------~--~~H~aAVKA~awcP~q~~ 357 (484)
T KOG0305|consen 297 LQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFT--------F--TEHTAAVKALAWCPWQSG 357 (484)
T ss_pred hhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEE--------E--eccceeeeEeeeCCCccC
Confidence 223458899999999999999999999 9999431 011111 1 124456677777766554
No 39
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=97.86 E-value=0.00041 Score=72.92 Aligned_cols=107 Identities=11% Similarity=0.035 Sum_probs=75.7
Q ss_pred CeeEEEEecCCCEEEEEeecCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEEEEeCC
Q 000733 108 NVDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGGVNG 187 (1324)
Q Consensus 108 ~VshLAFSsDEs~LAVcaesGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl~e 187 (1324)
.+..++|++|+.+|+++...++.|.+||+.+.. ....+... ..+..+.|+|+....++....||.|++||+..
T Consensus 32 ~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~-----~~~~~~~~--~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~ 104 (300)
T TIGR03866 32 RPRGITLSKDGKLLYVCASDSDTIQVIDLATGE-----VIGTLPSG--PDPELFALHPNGKILYIANEDDNLVTVIDIET 104 (300)
T ss_pred CCCceEECCCCCEEEEEECCCCeEEEEECCCCc-----EEEeccCC--CCccEEEECCCCCEEEEEcCCCCeEEEEECCC
Confidence 477899999999887776556789999987531 11222222 33567899997664444556689999999975
Q ss_pred Cc--eee--ecceeEEEeccCCCEEEEEecCc--eEEEcc
Q 000733 188 PL--EDV--MDNVDAVEWSVKGKFVAVAKKNV--LSILTS 221 (1324)
Q Consensus 188 ~l--k~V--asgVScVcWSPKGKQLVVGlaDG--IsQyTP 221 (1324)
.. ..+ ...+.+++|+|+|+.|+++..++ +..|..
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~ 144 (300)
T TIGR03866 105 RKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDT 144 (300)
T ss_pred CeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeC
Confidence 42 112 23578999999999999998886 566654
No 40
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.84 E-value=0.00073 Score=78.10 Aligned_cols=188 Identities=12% Similarity=0.124 Sum_probs=118.5
Q ss_pred CcceEeeCCcceEEEEEcCCceEEEEehHHHHHHhhcccCC-cc--ccccc------------ceeeeec---------C
Q 000733 49 SLPLAVSQLSHQLIFAAHSSGFCVARTNDVIDAAKEMKENG-TR--CCVQE------------LSVVDVP---------F 104 (1324)
Q Consensus 49 sSLLAVSN~K~GLvfAAgpdGLvVarTsDLr~a~ksa~en~-tv--~~~~d------------l~vi~VP---------L 104 (1324)
.+...-.. ..+++.+|+.+|+.++++++.-+.+....+.. ++ -|... +++++.. .
T Consensus 8 i~~~~~Nq-d~~~lsvGs~~Gyk~~~~~~~~k~~~~~~~~~~IvEmLFSSSLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~f 86 (391)
T KOG2110|consen 8 INFIGFNQ-DSTLLSVGSKDGYKIFSCSPFEKCFSKDTEGVSIVEMLFSSSLVAIVSIKQPRKLKVVHFKKKTTICEIFF 86 (391)
T ss_pred eeeeeecc-ceeEEEccCCCceeEEecCchHHhhcccCCCeEEEEeecccceeEEEecCCCceEEEEEcccCceEEEEec
Confidence 34444444 77788888899999999999987553321111 10 11111 1111111 1
Q ss_pred CCCCeeEEEEecCCCEEEEEeecCCeEEEEEcccccCCCCcceeEEec---CCCcceEEEEecCCCCCeEE--EEEeCCe
Q 000733 105 ENENVDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSL---NGSTYVKDIRWRKKPENSFL--ALSNVGR 179 (1324)
Q Consensus 105 p~s~VshLAFSsDEs~LAVcaesGg~L~VYDV~SLlng~t~P~~sisL---n~st~VrdLaWNP~~aslLA--VVSsDGs 179 (1324)
| ..| |++=-.-..|+||-+. .|+|||++... .+.+|.. ++ ..+.+|.+|+... .+| ..++.|.
T Consensus 87 p-t~I--L~VrmNr~RLvV~Lee--~IyIydI~~Mk-----lLhTI~t~~~n~-~gl~AlS~n~~n~-ylAyp~s~t~Gd 154 (391)
T KOG2110|consen 87 P-TSI--LAVRMNRKRLVVCLEE--SIYIYDIKDMK-----LLHTIETTPPNP-KGLCALSPNNANC-YLAYPGSTTSGD 154 (391)
T ss_pred C-Cce--EEEEEccceEEEEEcc--cEEEEecccce-----eehhhhccCCCc-cceEeeccCCCCc-eEEecCCCCCce
Confidence 1 123 3333456678899944 69999998753 3334333 33 5578887777433 233 3467999
Q ss_pred EEEEEeCCC--c---eeeecceeEEEeccCCCEEEEEecCc--eEEEc-cCcccccccccCccccCCCCCCCCceeEEEE
Q 000733 180 LYRGGVNGP--L---EDVMDNVDAVEWSVKGKFVAVAKKNV--LSILT-SKLKERLPISLSFKSWVGDCDVNCSVKVDSI 251 (1324)
Q Consensus 180 L~Vldl~e~--l---k~VasgVScVcWSPKGKQLVVGlaDG--IsQyT-PDgeeKkvIP~Pf~S~I~D~d~d~sV~V~SI 251 (1324)
+++||+..- + ..+.+.+.|+++|++|+.||.|+..| |..|. |+|+...++.+-. ..+.+-+|
T Consensus 155 V~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~----------~~~~IySL 224 (391)
T KOG2110|consen 155 VVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGT----------YPVSIYSL 224 (391)
T ss_pred EEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCc----------eeeEEEEE
Confidence 999998642 1 22358999999999999999999999 88885 7887777777642 14567777
Q ss_pred EEecCCeE
Q 000733 252 RWVRRDCI 259 (1324)
Q Consensus 252 ~WLeNd~y 259 (1324)
.+-....|
T Consensus 225 ~Fs~ds~~ 232 (391)
T KOG2110|consen 225 SFSPDSQF 232 (391)
T ss_pred EECCCCCe
Confidence 77654434
No 41
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=97.83 E-value=0.00093 Score=83.57 Aligned_cols=179 Identities=11% Similarity=0.142 Sum_probs=114.4
Q ss_pred CcceEeeCCcceEEEEEcCCceEEEEehHHHHHHhhcccCCcccccccceeeeecCCCCCeeEEEEecCCCEEEEEeecC
Q 000733 49 SLPLAVSQLSHQLIFAAHSSGFCVARTNDVIDAAKEMKENGTRCCVQELSVVDVPFENENVDILSLSNDESTLAVSLYQS 128 (1324)
Q Consensus 49 sSLLAVSN~K~GLvfAAgpdGLvVarTsDLr~a~ksa~en~tv~~~~dl~vi~VPLp~s~VshLAFSsDEs~LAVcaesG 128 (1324)
-...+|+. .-++|++|..++-+...+ +-+. .++.-+....+| +.+++|+.||.++|++. ++
T Consensus 57 ~~v~~ia~-~s~~f~~~s~~~tv~~y~------fps~--------~~~~iL~Rftlp---~r~~~v~g~g~~iaags-dD 117 (933)
T KOG1274|consen 57 ELVSSIAC-YSNHFLTGSEQNTVLRYK------FPSG--------EEDTILARFTLP---IRDLAVSGSGKMIAAGS-DD 117 (933)
T ss_pred ceeEEEee-cccceEEeeccceEEEee------CCCC--------Cccceeeeeecc---ceEEEEecCCcEEEeec-Cc
Confidence 34567777 667777777666333211 1111 111112233445 88999999999877665 34
Q ss_pred CeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEEEEeCCCce--e---e--------ecc
Q 000733 129 PHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGGVNGPLE--D---V--------MDN 195 (1324)
Q Consensus 129 g~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl~e~lk--~---V--------asg 195 (1324)
-.|.+.++.+..+. ..+. ++.+.|.+|.++|... .+|+.+.||+|+||++.++.. . + ..-
T Consensus 118 ~~vK~~~~~D~s~~--~~lr----gh~apVl~l~~~p~~~-fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i 190 (933)
T KOG1274|consen 118 TAVKLLNLDDSSQE--KVLR----GHDAPVLQLSYDPKGN-FLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRI 190 (933)
T ss_pred eeEEEEeccccchh--eeec----ccCCceeeeeEcCCCC-EEEEEecCceEEEEEcccchhhhhcccCCccccccccce
Confidence 57777777765432 2111 2347899999999654 899999999999999986521 1 1 123
Q ss_pred eeEEEeccCCCEEEEEecCc-eEEEccCc-ccccccccCccccCCCCCCCCceeEEEEEEecCCeEEEEE
Q 000733 196 VDAVEWSVKGKFVAVAKKNV-LSILTSKL-KERLPISLSFKSWVGDCDVNCSVKVDSIRWVRRDCIIIGC 263 (1324)
Q Consensus 196 VScVcWSPKGKQLVVGlaDG-IsQyTPDg-eeKkvIP~Pf~S~I~D~d~d~sV~V~SI~WLeNd~yLFg~ 263 (1324)
++-++|+|||-++++-..++ |..|.+++ +....+..-+ ..-.+..+.|-.+..|+-+.
T Consensus 191 ~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~----------~ss~~~~~~wsPnG~YiAAs 250 (933)
T KOG1274|consen 191 CTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKL----------SSSKFSDLQWSPNGKYIAAS 250 (933)
T ss_pred eeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccc----------cccceEEEEEcCCCcEEeee
Confidence 34599999977777777777 99999864 3333333211 12238899999998886443
No 42
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=97.81 E-value=0.00012 Score=86.68 Aligned_cols=107 Identities=14% Similarity=0.185 Sum_probs=90.8
Q ss_pred CeeEEEEecCCCEEEEEeecCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEEEEeCC
Q 000733 108 NVDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGGVNG 187 (1324)
Q Consensus 108 ~VshLAFSsDEs~LAVcaesGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl~e 187 (1324)
-|.+|-|+.--..|.+.+...|.|++|||.. ..|.+.+.-.++++-+.+.++|...-+|+-|.-|..|++||+..
T Consensus 166 svRll~ys~skr~lL~~asd~G~VtlwDv~g-----~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s 240 (673)
T KOG4378|consen 166 SVRLLRYSPSKRFLLSIASDKGAVTLWDVQG-----MSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRS 240 (673)
T ss_pred eEEEeecccccceeeEeeccCCeEEEEeccC-----CCcccchhhhccCCcCcceecCCccceEEEecccceEEEeeccc
Confidence 5679999998888888887789999999875 45666666666788899999998888999999999999999975
Q ss_pred Cc---ee-eecceeEEEeccCCCEEEEEecCc-eEEE
Q 000733 188 PL---ED-VMDNVDAVEWSVKGKFVAVAKKNV-LSIL 219 (1324)
Q Consensus 188 ~l---k~-VasgVScVcWSPKGKQLVVGlaDG-IsQy 219 (1324)
.. .+ +....++|++++.|-+||+|..+| |.+|
T Consensus 241 ~~s~~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~Y 277 (673)
T KOG4378|consen 241 QASTDRLTYSHPLSTVAFSECGTYLCAGNSKGELIAY 277 (673)
T ss_pred ccccceeeecCCcceeeecCCceEEEeecCCceEEEE
Confidence 41 12 236889999999999999999999 9999
No 43
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=97.78 E-value=0.00037 Score=85.68 Aligned_cols=139 Identities=18% Similarity=0.253 Sum_probs=96.0
Q ss_pred eEEEEecCCCEEEEEeecCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEEEEeCCCc
Q 000733 110 DILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGGVNGPL 189 (1324)
Q Consensus 110 shLAFSsDEs~LAVcaesGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl~e~l 189 (1324)
-.|.|++||.-++.-+ |..|.+||.+. +..++..++....|..|+-+|... +++++...|.....++....
T Consensus 18 Gnl~ft~dG~sviSPv--GNrvsv~dLkn------N~S~Tl~~e~~~NI~~ialSp~g~-lllavdE~g~~~lvs~~~r~ 88 (893)
T KOG0291|consen 18 GNLVFTKDGNSVISPV--GNRVSVFDLKN------NKSYTLPLETRYNITRIALSPDGT-LLLAVDERGRALLVSLLSRS 88 (893)
T ss_pred CcEEECCCCCEEEecc--CCEEEEEEccC------CcceeEEeecCCceEEEEeCCCce-EEEEEcCCCcEEEEecccce
Confidence 3688999999888888 89999999763 233455555567899999999654 67788888888777776654
Q ss_pred eee----ecceeEEEeccCCCEEEEEecCceEEEccCcccccccccCccccCCCCCCCCceeEEEEEEecCCeEE
Q 000733 190 EDV----MDNVDAVEWSVKGKFVAVAKKNVLSILTSKLKERLPISLSFKSWVGDCDVNCSVKVDSIRWVRRDCII 260 (1324)
Q Consensus 190 k~V----asgVScVcWSPKGKQLVVGlaDGIsQyTPDgeeKkvIP~Pf~S~I~D~d~d~sV~V~SI~WLeNd~yL 260 (1324)
..+ ..+|.|++|||+||.+|+|..|-+.+|..-++.+..++ ||. ..-...+..-.|.+|.|...--|+
T Consensus 89 Vlh~f~fk~~v~~i~fSPng~~fav~~gn~lqiw~~P~~~~~~~~-pFv--l~r~~~g~fddi~si~Ws~DSr~l 160 (893)
T KOG0291|consen 89 VLHRFNFKRGVGAIKFSPNGKFFAVGCGNLLQIWHAPGEIKNEFN-PFV--LHRTYLGHFDDITSIDWSDDSRLL 160 (893)
T ss_pred eeEEEeecCccceEEECCCCcEEEEEecceeEEEecCcchhcccC-cce--EeeeecCCccceeEEEeccCCceE
Confidence 332 48999999999999999999999888853333332222 320 000111222368888997554444
No 44
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=97.72 E-value=0.0014 Score=76.00 Aligned_cols=180 Identities=17% Similarity=0.164 Sum_probs=114.2
Q ss_pred cCCc-eEEEEehHHHHHHhhcccCCcccccccceeeeecCCCCCeeEEEEec--CCCEEEEEeecCCeEEEEEcccccCC
Q 000733 66 HSSG-FCVARTNDVIDAAKEMKENGTRCCVQELSVVDVPFENENVDILSLSN--DESTLAVSLYQSPHIHFFSVHSLLNK 142 (1324)
Q Consensus 66 gpdG-LvVarTsDLr~a~ksa~en~tv~~~~dl~vi~VPLp~s~VshLAFSs--DEs~LAVcaesGg~L~VYDV~SLlng 142 (1324)
+..| |.|..+.....++.++. ..+.....-.+.+.......=+-|.+|+ .|. |+...- -..|++|...+-.=+
T Consensus 172 se~G~V~Vw~l~~~l~~l~~~~--~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~-LlsGDc-~~~I~lw~~~~g~W~ 247 (440)
T KOG0302|consen 172 SENGRVQVWDLAPHLNALSEPG--LEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGR-LLSGDC-VKGIHLWEPSTGSWK 247 (440)
T ss_pred cccCcEEEEEchhhhhhhcCcc--ccccccccCceEEecccCccceeeecccccccc-cccCcc-ccceEeeeeccCcee
Confidence 3444 77777777777765542 1111111112334444422335778887 444 222111 257999998872111
Q ss_pred -CCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEEEEeCCCc-------eeeecceeEEEeccCCCEEEEEecC
Q 000733 143 -EIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGGVNGPL-------EDVMDNVDAVEWSVKGKFVAVAKKN 214 (1324)
Q Consensus 143 -~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl~e~l-------k~VasgVScVcWSPKGKQLVVGlaD 214 (1324)
+..||.. +...|-+|+|+|+-..+||-|+.||++.|||+.... +.+.+.|-.++|+.+--.||.|..|
T Consensus 248 vd~~Pf~g----H~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~Dd 323 (440)
T KOG0302|consen 248 VDQRPFTG----HTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDD 323 (440)
T ss_pred ecCccccc----cccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCC
Confidence 6677764 457899999999999999999999999999997542 1223789999999998899999999
Q ss_pred c-eEEEccCcccccccccC---ccccCCCCCCCCceeEEEEEEecCCeEEEEEE
Q 000733 215 V-LSILTSKLKERLPISLS---FKSWVGDCDVNCSVKVDSIRWVRRDCIIIGCF 264 (1324)
Q Consensus 215 G-IsQyTPDgeeKkvIP~P---f~S~I~D~d~d~sV~V~SI~WLeNd~yLFg~v 264 (1324)
| +.+| |+..-+ +..| |+ .. .-.|.+|.|--.+.-+|++.
T Consensus 324 Gt~~iw--DLR~~~-~~~pVA~fk------~H--k~pItsieW~p~e~s~iaas 366 (440)
T KOG0302|consen 324 GTLSIW--DLRQFK-SGQPVATFK------YH--KAPITSIEWHPHEDSVIAAS 366 (440)
T ss_pred ceEEEE--Ehhhcc-CCCcceeEE------ec--cCCeeEEEeccccCceEEec
Confidence 9 9999 332111 1123 21 11 23589999985544466664
No 45
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=97.72 E-value=0.00024 Score=82.93 Aligned_cols=109 Identities=13% Similarity=0.032 Sum_probs=83.7
Q ss_pred CCCeeEEEEecCCCEEEEEeecCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEEEEe
Q 000733 106 NENVDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGGV 185 (1324)
Q Consensus 106 ~s~VshLAFSsDEs~LAVcaesGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl 185 (1324)
...|+.+||.+||++++.+. -+..=+|||+++.-. +--+. ++...|.++.|+|+.- .+|.++.|++..|||+
T Consensus 303 s~~v~~iaf~~DGSL~~tGG-lD~~~RvWDlRtgr~--im~L~----gH~k~I~~V~fsPNGy-~lATgs~Dnt~kVWDL 374 (459)
T KOG0272|consen 303 SKGVFSIAFQPDGSLAATGG-LDSLGRVWDLRTGRC--IMFLA----GHIKEILSVAFSPNGY-HLATGSSDNTCKVWDL 374 (459)
T ss_pred ccccceeEecCCCceeeccC-ccchhheeecccCcE--EEEec----ccccceeeEeECCCce-EEeecCCCCcEEEeee
Confidence 44799999999999554444 334568999997532 21111 3457899999999876 5999999999999999
Q ss_pred CCCcee-----eecceeEEEecc-CCCEEEEEecCc-eEEEccC
Q 000733 186 NGPLED-----VMDNVDAVEWSV-KGKFVAVAKKNV-LSILTSK 222 (1324)
Q Consensus 186 ~e~lk~-----VasgVScVcWSP-KGKQLVVGlaDG-IsQyTPD 222 (1324)
...-.+ +.+-|+-||++| -|+.||.++.|+ +.+|++.
T Consensus 375 R~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~ 418 (459)
T KOG0272|consen 375 RMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTR 418 (459)
T ss_pred cccccceecccccchhhheEecccCCeEEEEcccCcceeeecCC
Confidence 754222 237889999999 899999999999 9999864
No 46
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=97.71 E-value=0.0066 Score=75.23 Aligned_cols=263 Identities=13% Similarity=0.191 Sum_probs=150.7
Q ss_pred CCeeEEEEecCCCEEEEEeecCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEE-EEeCCeEEEEEe
Q 000733 107 ENVDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLA-LSNVGRLYRGGV 185 (1324)
Q Consensus 107 s~VshLAFSsDEs~LAVcaesGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAV-VSsDGsL~Vldl 185 (1324)
++|...+|...-..|||.-.+ |...+|++.++. -++..++.. ..|.++.||-... -+|+ |..-|.|.||+.
T Consensus 266 ~kvtaa~fH~~t~~lvvgFss-G~f~LyelP~f~-----lih~LSis~-~~I~t~~~N~tGD-WiA~g~~klgQLlVweW 337 (893)
T KOG0291|consen 266 SKVTAAAFHKGTNLLVVGFSS-GEFGLYELPDFN-----LIHSLSISD-QKILTVSFNSTGD-WIAFGCSKLGQLLVWEW 337 (893)
T ss_pred cceeeeeccCCceEEEEEecC-CeeEEEecCCce-----EEEEeeccc-ceeeEEEecccCC-EEEEcCCccceEEEEEe
Confidence 467788887766666665544 688899988763 234445543 6799999998665 4554 455699999998
Q ss_pred CCCcee-----eecceeEEEeccCCCEEEEEecCc-eEEEccCcccccccccCccccCCCCCCCCceeEEEEEEecCCeE
Q 000733 186 NGPLED-----VMDNVDAVEWSVKGKFVAVAKKNV-LSILTSKLKERLPISLSFKSWVGDCDVNCSVKVDSIRWVRRDCI 259 (1324)
Q Consensus 186 ~e~lk~-----VasgVScVcWSPKGKQLVVGlaDG-IsQyTPDgeeKkvIP~Pf~S~I~D~d~d~sV~V~SI~WLeNd~y 259 (1324)
..+.=+ +...++|++.||+|..||+|..|| |.+| +.....+|.. | .+..--|..++|-.+...
T Consensus 338 qsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvW--n~~SgfC~vT-F--------teHts~Vt~v~f~~~g~~ 406 (893)
T KOG0291|consen 338 QSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVW--NTQSGFCFVT-F--------TEHTSGVTAVQFTARGNV 406 (893)
T ss_pred eccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEE--eccCceEEEE-e--------ccCCCceEEEEEEecCCE
Confidence 654222 247899999999999999999999 9999 3333333322 1 011225888999876645
Q ss_pred EEEEEeecCCCCcceeEEEEEecCCCCccCCCCCCeEEeecccccccccCCCCCCCcceEEEeeeccc--cEEEEEecCc
Q 000733 260 IIGCFQLTEDGKEENYLVQVIQSKDGKITDASSEPVVLSFSDVFSDVIDDILPSGTGPYLFLTYVERW--GLAISANRKN 337 (1324)
Q Consensus 260 LFg~vysaeDgseEsYvV~IIrkKdgk~~~~~ss~tf~~F~D~~~~~~DDi~PFGsgP~~yl~~L~dW--dLL~VASSaS 337 (1324)
+|... + ||.-..+-+ .|-.+ |..|+-+. |..|..--.|- +|++++.-.+
T Consensus 407 llssS-L--DGtVRAwDl--kRYrN-----------fRTft~P~-------------p~QfscvavD~sGelV~AG~~d~ 457 (893)
T KOG0291|consen 407 LLSSS-L--DGTVRAWDL--KRYRN-----------FRTFTSPE-------------PIQFSCVAVDPSGELVCAGAQDS 457 (893)
T ss_pred EEEee-c--CCeEEeeee--cccce-----------eeeecCCC-------------ceeeeEEEEcCCCCEEEeeccce
Confidence 54443 2 443222211 11101 33343221 44443322232 5777777788
Q ss_pred ccceeEEeeeccccCCCcceeeeccCCCccceee----------CCCCCCCcceeEEEEEecCCCceeeecCCCCccc--
Q 000733 338 IDDHVVLLRWSLDDEKNDIAVVDINRDKWIPRIK----------LQDNGNDNLIMGLCIDKVSLCGKVKVQLGVEEKE-- 405 (1324)
Q Consensus 338 tDIgIL~~~W~L~D~~~~~~vlEi~DDS~RAeLP----------LTED~DDT~PIGLALDLSSTe~kVevpIg~DE~e-- 405 (1324)
=||-| |...-+ -.+|++--..-|.-- .+..-|-|.=|==.+|-+.+ ..+..+.-|-..
T Consensus 458 F~Ifv----WS~qTG----qllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~--vEtl~i~sdvl~vs 527 (893)
T KOG0291|consen 458 FEIFV----WSVQTG----QLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGT--VETLEIRSDVLAVS 527 (893)
T ss_pred EEEEE----EEeecC----eeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCce--eeeEeeccceeEEE
Confidence 88877 443210 012222222222111 12233444444333443332 223334433322
Q ss_pred -CCCceEEEEEcCCccEEEEEEE
Q 000733 406 -LSPYFILMCLTLDGKLNMFHVA 427 (1324)
Q Consensus 406 -LPPlPiL~VLTnEGvL~sw~VV 427 (1324)
-|-.--|.|.|.||.|..|.+.
T Consensus 528 frPdG~elaVaTldgqItf~d~~ 550 (893)
T KOG0291|consen 528 FRPDGKELAVATLDGQITFFDIK 550 (893)
T ss_pred EcCCCCeEEEEEecceEEEEEhh
Confidence 2556678999999999999885
No 47
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=97.70 E-value=0.0002 Score=82.55 Aligned_cols=138 Identities=16% Similarity=0.207 Sum_probs=99.6
Q ss_pred CeeEEEEecCCCEEEEEeecCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEEEEeC-
Q 000733 108 NVDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGGVN- 186 (1324)
Q Consensus 108 ~VshLAFSsDEs~LAVcaesGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl~- 186 (1324)
.|+.+.|++-|..++++..++..|.+||++. ..|+..+.+. ..-+.+.||| -+-.|.+.+.|-+||.+|..
T Consensus 189 ti~svkfNpvETsILas~~sDrsIvLyD~R~-----~~Pl~KVi~~--mRTN~IswnP-eafnF~~a~ED~nlY~~DmR~ 260 (433)
T KOG0268|consen 189 SISSVKFNPVETSILASCASDRSIVLYDLRQ-----ASPLKKVILT--MRTNTICWNP-EAFNFVAANEDHNLYTYDMRN 260 (433)
T ss_pred ceeEEecCCCcchheeeeccCCceEEEeccc-----CCccceeeee--ccccceecCc-cccceeeccccccceehhhhh
Confidence 6889999998877766665667899999885 5566665553 3456799999 55568888999999999874
Q ss_pred --CCceee---ecceeEEEeccCCCEEEEEecCc-eEEEccCcccccccccCccccCCCCCCCCceeEEEEEEecCCeEE
Q 000733 187 --GPLEDV---MDNVDAVEWSVKGKFVAVAKKNV-LSILTSKLKERLPISLSFKSWVGDCDVNCSVKVDSIRWVRRDCII 260 (1324)
Q Consensus 187 --e~lk~V---asgVScVcWSPKGKQLVVGlaDG-IsQyTPDgeeKkvIP~Pf~S~I~D~d~d~sV~V~SI~WLeNd~yL 260 (1324)
..+.++ .+.|..|++||-|+-+|.|+-|- |.+|.-+....+.|=- -.-=-+|..|.|--...|+
T Consensus 261 l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYh----------tkRMq~V~~Vk~S~Dskyi 330 (433)
T KOG0268|consen 261 LSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYH----------TKRMQHVFCVKYSMDSKYI 330 (433)
T ss_pred hcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhh----------HhhhheeeEEEEeccccEE
Confidence 233333 47889999999999999999998 9999643222222210 0011379999997666576
Q ss_pred EEE
Q 000733 261 IGC 263 (1324)
Q Consensus 261 Fg~ 263 (1324)
|..
T Consensus 331 ~SG 333 (433)
T KOG0268|consen 331 ISG 333 (433)
T ss_pred Eec
Confidence 654
No 48
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=97.68 E-value=0.00017 Score=83.87 Aligned_cols=139 Identities=12% Similarity=0.182 Sum_probs=100.6
Q ss_pred CCCCeeEEEEecCCCEEEEEeecCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEEEE
Q 000733 105 ENENVDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGG 184 (1324)
Q Consensus 105 p~s~VshLAFSsDEs~LAVcaesGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vld 184 (1324)
+++.|..+..|++|..|+... .||.|.+|+-.- + ++.- +.-.+...||+++++|+.. .|+.|+.||+|.|||
T Consensus 137 HDs~Vr~m~ws~~g~wmiSgD-~gG~iKyWqpnm--n-nVk~---~~ahh~eaIRdlafSpnDs-kF~t~SdDg~ikiWd 208 (464)
T KOG0284|consen 137 HDSPVRTMKWSHNGTWMISGD-KGGMIKYWQPNM--N-NVKI---IQAHHAEAIRDLAFSPNDS-KFLTCSDDGTIKIWD 208 (464)
T ss_pred hcccceeEEEccCCCEEEEcC-CCceEEecccch--h-hhHH---hhHhhhhhhheeccCCCCc-eeEEecCCCeEEEEe
Confidence 466799999999999987765 678999998442 1 1111 1112236799999999655 799999999999999
Q ss_pred eCCC--ceee---ecceeEEEeccCCCEEEEEecCc-eEEEccC-cccccccccCccccCCCCCCCCceeEEEEEEecCC
Q 000733 185 VNGP--LEDV---MDNVDAVEWSVKGKFVAVAKKNV-LSILTSK-LKERLPISLSFKSWVGDCDVNCSVKVDSIRWVRRD 257 (1324)
Q Consensus 185 l~e~--lk~V---asgVScVcWSPKGKQLVVGlaDG-IsQyTPD-geeKkvIP~Pf~S~I~D~d~d~sV~V~SI~WLeNd 257 (1324)
.... ..++ .-.|.|++|.|.=-.||+|++|- |..|.|- +....++.. + .-.|..+.|-.|.
T Consensus 209 f~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~-H-----------KntVl~~~f~~n~ 276 (464)
T KOG0284|consen 209 FRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHG-H-----------KNTVLAVKFNPNG 276 (464)
T ss_pred ccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhh-c-----------cceEEEEEEcCCC
Confidence 8532 1233 35899999999988999999999 9999773 333322221 2 2368999998776
Q ss_pred eEEEEE
Q 000733 258 CIIIGC 263 (1324)
Q Consensus 258 ~yLFg~ 263 (1324)
.|+.+.
T Consensus 277 N~Llt~ 282 (464)
T KOG0284|consen 277 NWLLTG 282 (464)
T ss_pred CeeEEc
Confidence 676654
No 49
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=97.67 E-value=0.00019 Score=87.36 Aligned_cols=107 Identities=21% Similarity=0.223 Sum_probs=80.8
Q ss_pred CCeeEEEEec-CCCEEEEEeecCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEEEEe
Q 000733 107 ENVDILSLSN-DESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGGV 185 (1324)
Q Consensus 107 s~VshLAFSs-DEs~LAVcaesGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl 185 (1324)
+.|..|.+++ -...+.+|. +-.+++|+... ...|++.+..+. ..|.+++|+|+.+..||++..||.|.+||+
T Consensus 399 g~v~~v~~nPF~~k~fls~g--DW~vriWs~~~----~~~Pl~~~~~~~-~~v~~vaWSptrpavF~~~d~~G~l~iWDL 471 (555)
T KOG1587|consen 399 GPVYAVSRNPFYPKNFLSVG--DWTVRIWSEDV----IASPLLSLDSSP-DYVTDVAWSPTRPAVFATVDGDGNLDIWDL 471 (555)
T ss_pred cceEeeecCCCccceeeeec--cceeEeccccC----CCCcchhhhhcc-ceeeeeEEcCcCceEEEEEcCCCceehhhh
Confidence 3577777776 233333333 56899997442 477877766554 569999999999999999999999999999
Q ss_pred CCCc-------eeeecceeEEEeccCCCEEEEEecCc-eEEEc
Q 000733 186 NGPL-------EDVMDNVDAVEWSVKGKFVAVAKKNV-LSILT 220 (1324)
Q Consensus 186 ~e~l-------k~VasgVScVcWSPKGKQLVVGlaDG-IsQyT 220 (1324)
.... ++......++-|++.|+-|++|..+| +.+|.
T Consensus 472 l~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~ 514 (555)
T KOG1587|consen 472 LQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILK 514 (555)
T ss_pred hccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEE
Confidence 6431 12234567899999999999999999 99994
No 50
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=97.67 E-value=0.00095 Score=76.00 Aligned_cols=195 Identities=15% Similarity=0.156 Sum_probs=122.8
Q ss_pred CCcceEeeCCcceEEEEEcCCc-eEEEEehHHHHHHhhc-c---cCCcccccccceeeeecCCCCCeeEEEEecCCCEEE
Q 000733 48 PSLPLAVSQLSHQLIFAAHSSG-FCVARTNDVIDAAKEM-K---ENGTRCCVQELSVVDVPFENENVDILSLSNDESTLA 122 (1324)
Q Consensus 48 ~sSLLAVSN~K~GLvfAAgpdG-LvVarTsDLr~a~ksa-~---en~tv~~~~dl~vi~VPLp~s~VshLAFSsDEs~LA 122 (1324)
+|..-+-|. .-.|++.|+.+. ++|..++-++ .++. + ++++. ...-.+.++==+...|..|.|.+-+.+|+
T Consensus 114 ~cR~aafs~-DG~lvATGsaD~SIKildverml--aks~~~em~~~~~q--a~hPvIRTlYDH~devn~l~FHPre~ILi 188 (430)
T KOG0640|consen 114 PCRAAAFSP-DGSLVATGSADASIKILDVERML--AKSKPKEMISGDTQ--ARHPVIRTLYDHVDEVNDLDFHPRETILI 188 (430)
T ss_pred ceeeeeeCC-CCcEEEccCCcceEEEeehhhhh--hhcchhhhccCCcc--cCCceEeehhhccCcccceeecchhheEE
Confidence 556666666 444555555444 6676666444 3332 1 12221 11001112211123799999999999998
Q ss_pred EEeecCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEEEEeCCCce--------eeec
Q 000733 123 VSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGGVNGPLE--------DVMD 194 (1324)
Q Consensus 123 VcaesGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl~e~lk--------~Vas 194 (1324)
... +++-|.+||...-..+..-..+ ..-..||.|.+-|.. +.++|-+.--.|+++|++.-.- -+.+
T Consensus 189 S~s-rD~tvKlFDfsK~saKrA~K~~----qd~~~vrsiSfHPsG-efllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ 262 (430)
T KOG0640|consen 189 SGS-RDNTVKLFDFSKTSAKRAFKVF----QDTEPVRSISFHPSG-EFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTG 262 (430)
T ss_pred ecc-CCCeEEEEecccHHHHHHHHHh----hccceeeeEeecCCC-ceEEEecCCCceeEEeccceeEeeecCccccccc
Confidence 877 4578999997643322111111 122568999999954 4777888889999999965422 2347
Q ss_pred ceeEEEeccCCCEEEEEecCc-eEEEccCcccccccccCccccCCCCCCCCceeEEEEEEecCCeEEEE
Q 000733 195 NVDAVEWSVKGKFVAVAKKNV-LSILTSKLKERLPISLSFKSWVGDCDVNCSVKVDSIRWVRRDCIIIG 262 (1324)
Q Consensus 195 gVScVcWSPKGKQLVVGlaDG-IsQyTPDgeeKkvIP~Pf~S~I~D~d~d~sV~V~SI~WLeNd~yLFg 262 (1324)
.|+||-.|+-|+..|.|++|| |.+| ||...+.|..= + .-.++ -.|-+..+-.|..|++.
T Consensus 263 ai~~V~Ys~t~~lYvTaSkDG~Iklw--DGVS~rCv~t~-----~-~AH~g-sevcSa~Ftkn~kyiLs 322 (430)
T KOG0640|consen 263 AITQVRYSSTGSLYVTASKDGAIKLW--DGVSNRCVRTI-----G-NAHGG-SEVCSAVFTKNGKYILS 322 (430)
T ss_pred ceeEEEecCCccEEEEeccCCcEEee--ccccHHHHHHH-----H-hhcCC-ceeeeEEEccCCeEEee
Confidence 999999999999999999999 9999 78777766431 1 11233 36777777777766544
No 51
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=97.64 E-value=0.00024 Score=87.76 Aligned_cols=134 Identities=16% Similarity=0.160 Sum_probs=98.6
Q ss_pred CCeeEEEEecCCCEEEEEeecCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEEEEeC
Q 000733 107 ENVDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGGVN 186 (1324)
Q Consensus 107 s~VshLAFSsDEs~LAVcaesGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl~ 186 (1324)
+.|--|+.|-++.+|.+.+ +-.|++|.+.. ..-+..+.- ...|.+++|||.....|+--+-||.+++|++.
T Consensus 370 ~DILDlSWSKn~fLLSSSM--DKTVRLWh~~~-----~~CL~~F~H--ndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~ 440 (712)
T KOG0283|consen 370 ADILDLSWSKNNFLLSSSM--DKTVRLWHPGR-----KECLKVFSH--NDFVTCVAFNPVDDRYFISGSLDGKVRLWSIS 440 (712)
T ss_pred hhheecccccCCeeEeccc--cccEEeecCCC-----cceeeEEec--CCeeEEEEecccCCCcEeecccccceEEeecC
Confidence 3577788889999888888 78999998762 333444443 46999999999999999999999999999997
Q ss_pred CCce----eeecceeEEEeccCCCEEEEEecCc-eEEEccCc---ccccccccCccccCCCCCCCCceeEEEEEEec
Q 000733 187 GPLE----DVMDNVDAVEWSVKGKFVAVAKKNV-LSILTSKL---KERLPISLSFKSWVGDCDVNCSVKVDSIRWVR 255 (1324)
Q Consensus 187 e~lk----~VasgVScVcWSPKGKQLVVGlaDG-IsQyTPDg---eeKkvIP~Pf~S~I~D~d~d~sV~V~SI~WLe 255 (1324)
+... .+..=||+||++|+||..++|+-+| +.+|.-.+ .....|..-... -.-+. +|.+++.+.
T Consensus 441 d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~K-----k~~~~-rITG~Q~~p 511 (712)
T KOG0283|consen 441 DKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKK-----KKQGK-RITGLQFFP 511 (712)
T ss_pred cCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCc-----cccCc-eeeeeEecC
Confidence 6521 2347899999999999999999999 99996532 223333322100 11122 788888873
No 52
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=97.61 E-value=0.0023 Score=71.84 Aligned_cols=113 Identities=18% Similarity=0.217 Sum_probs=83.2
Q ss_pred eEEEEecCCCEEEEEeecCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEEEEeCC--
Q 000733 110 DILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGGVNG-- 187 (1324)
Q Consensus 110 shLAFSsDEs~LAVcaesGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl~e-- 187 (1324)
..++.++||.+.+|.... ..|.++|++...--...++. ..++.+.|| ..+++|.+-+-.|.+-|+.+-.
T Consensus 110 i~i~wsp~g~~~~~~~kd-D~it~id~r~~~~~~~~~~~-------~e~ne~~w~-~~nd~Fflt~GlG~v~ILsypsLk 180 (313)
T KOG1407|consen 110 INITWSPDGEYIAVGNKD-DRITFIDARTYKIVNEEQFK-------FEVNEISWN-NSNDLFFLTNGLGCVEILSYPSLK 180 (313)
T ss_pred eEEEEcCCCCEEEEecCc-ccEEEEEecccceeehhccc-------ceeeeeeec-CCCCEEEEecCCceEEEEeccccc
Confidence 467889999999887744 58999999976543344433 357889999 7777777777779999998853
Q ss_pred Cc---eeeecceeEEEeccCCCEEEEEecCc-eEEEccC-ccccccccc
Q 000733 188 PL---EDVMDNVDAVEWSVKGKFVAVAKKNV-LSILTSK-LKERLPISL 231 (1324)
Q Consensus 188 ~l---k~VasgVScVcWSPKGKQLVVGlaDG-IsQyTPD-geeKkvIP~ 231 (1324)
.+ +.+..+--|+.++|+||++|+|.+|- +..|.++ +.=.+.|++
T Consensus 181 pv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isR 229 (313)
T KOG1407|consen 181 PVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISR 229 (313)
T ss_pred cccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeecc
Confidence 22 22347888999999999999999999 9999553 222344443
No 53
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.60 E-value=0.00051 Score=83.44 Aligned_cols=131 Identities=14% Similarity=0.167 Sum_probs=95.8
Q ss_pred CeeEEEEecCCCEEEEEeecCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEEEEeC-
Q 000733 108 NVDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGGVN- 186 (1324)
Q Consensus 108 ~VshLAFSsDEs~LAVcaesGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl~- 186 (1324)
.|+-|||.+||+-|++++ |..|.+||+..-.. .+++. ++...|..++|+-+. ..||--..|..+.+|+-+
T Consensus 14 ci~d~afkPDGsqL~lAA--g~rlliyD~ndG~l--lqtLK----gHKDtVycVAys~dG-krFASG~aDK~VI~W~~kl 84 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA--GSRLLVYDTSDGTL--LQPLK----GHKDTVYCVAYAKDG-KRFASGSADKSVIIWTSKL 84 (1081)
T ss_pred chheeEECCCCceEEEec--CCEEEEEeCCCccc--ccccc----cccceEEEEEEccCC-ceeccCCCceeEEEecccc
Confidence 488999999999999999 99999999986432 33332 234678888887754 367777777777777543
Q ss_pred CCc-e-----e-----------------------------------eecceeEEEeccCCCEEEEEecCc-eEEEccCcc
Q 000733 187 GPL-E-----D-----------------------------------VMDNVDAVEWSVKGKFVAVAKKNV-LSILTSKLK 224 (1324)
Q Consensus 187 e~l-k-----~-----------------------------------VasgVScVcWSPKGKQLVVGlaDG-IsQyTPDge 224 (1324)
++. + . ...++.|-+|..+|.+++.|..|| |++-.-.++
T Consensus 85 EG~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gE 164 (1081)
T KOG1538|consen 85 EGILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGE 164 (1081)
T ss_pred cceeeeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCC
Confidence 221 0 0 014777899999999999999999 999877899
Q ss_pred cccccccCccccCCCCCCCCceeEEEEEEecC
Q 000733 225 ERLPISLSFKSWVGDCDVNCSVKVDSIRWVRR 256 (1324)
Q Consensus 225 eKkvIP~Pf~S~I~D~d~d~sV~V~SI~WLeN 256 (1324)
++..|.+|- +++ -.|-+|+|-.+
T Consensus 165 ek~~I~Rpg--------g~N-spiwsi~~~p~ 187 (1081)
T KOG1538|consen 165 EKVKIERPG--------GSN-SPIWSICWNPS 187 (1081)
T ss_pred cceEEeCCC--------CCC-CCceEEEecCC
Confidence 999999983 111 24777777544
No 54
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=97.59 E-value=0.0011 Score=74.54 Aligned_cols=139 Identities=13% Similarity=0.144 Sum_probs=100.4
Q ss_pred CCeeEEEEecCCCEEEEEeecCCeEEEEEcccccCCCCcceeEEecCC-CcceEEEEecCCC-CCeEEEEEeCCeEEEEE
Q 000733 107 ENVDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNG-STYVKDIRWRKKP-ENSFLALSNVGRLYRGG 184 (1324)
Q Consensus 107 s~VshLAFSsDEs~LAVcaesGg~L~VYDV~SLlng~t~P~~sisLn~-st~VrdLaWNP~~-aslLAVVSsDGsL~Vld 184 (1324)
..|..||||+|++.++... .+-.|.+|++-.-+. +++.=.. ..=|.++.|.|+. ...++-.+.|+++.|||
T Consensus 106 ~dVlsva~s~dn~qivSGS-rDkTiklwnt~g~ck------~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWn 178 (315)
T KOG0279|consen 106 KDVLSVAFSTDNRQIVSGS-RDKTIKLWNTLGVCK------YTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWN 178 (315)
T ss_pred CceEEEEecCCCceeecCC-CcceeeeeeecccEE------EEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEc
Confidence 3699999999999876554 457899999764321 2221111 3569999999986 44677788999999999
Q ss_pred eCCC-c--eee--ecceeEEEeccCCCEEEEEecCc-eEEEccCcccccccccCccccCCCCCCCCceeEEEEEEecCCe
Q 000733 185 VNGP-L--EDV--MDNVDAVEWSVKGKFVAVAKKNV-LSILTSKLKERLPISLSFKSWVGDCDVNCSVKVDSIRWVRRDC 258 (1324)
Q Consensus 185 l~e~-l--k~V--asgVScVcWSPKGKQLVVGlaDG-IsQyTPDgeeKkvIP~Pf~S~I~D~d~d~sV~V~SI~WLeNd~ 258 (1324)
+..- + ..+ ...|+.+..||+|..++.|.+|| +..| |+.+++.+-. -+....|-+++...|.
T Consensus 179 l~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~Lw--dL~~~k~lys----------l~a~~~v~sl~fspnr- 245 (315)
T KOG0279|consen 179 LRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLW--DLNEGKNLYS----------LEAFDIVNSLCFSPNR- 245 (315)
T ss_pred cCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEE--EccCCceeEe----------ccCCCeEeeEEecCCc-
Confidence 9753 1 122 26899999999999999999999 9899 7888777432 1223467788877664
Q ss_pred EEEEEEe
Q 000733 259 IIIGCFQ 265 (1324)
Q Consensus 259 yLFg~vy 265 (1324)
|.++...
T Consensus 246 ywL~~at 252 (315)
T KOG0279|consen 246 YWLCAAT 252 (315)
T ss_pred eeEeecc
Confidence 7666543
No 55
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=97.59 E-value=0.00026 Score=82.52 Aligned_cols=116 Identities=19% Similarity=0.184 Sum_probs=86.3
Q ss_pred eeecCCCCCeeEEEEecCCCEEEEEeecCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCe
Q 000733 100 VDVPFENENVDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGR 179 (1324)
Q Consensus 100 i~VPLp~s~VshLAFSsDEs~LAVcaesGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGs 179 (1324)
..||+. +.|+.|.++.|++-|.+|.. +..|.++|++.+--...-...-+... .-...+.++|+.. ++|+-+.||.
T Consensus 336 ~sv~~g-g~vtSl~ls~~g~~lLsssR-Ddtl~viDlRt~eI~~~~sA~g~k~a--sDwtrvvfSpd~~-YvaAGS~dgs 410 (459)
T KOG0288|consen 336 RSVPLG-GRVTSLDLSMDGLELLSSSR-DDTLKVIDLRTKEIRQTFSAEGFKCA--SDWTRVVFSPDGS-YVAAGSADGS 410 (459)
T ss_pred eEeecC-cceeeEeeccCCeEEeeecC-CCceeeeecccccEEEEeeccccccc--cccceeEECCCCc-eeeeccCCCc
Confidence 567776 69999999999999999964 45899999887532111111112222 3477788999654 8999999999
Q ss_pred EEEEEeCCC-ceee----e--cceeEEEeccCCCEEEEEecCc-eEEEc
Q 000733 180 LYRGGVNGP-LEDV----M--DNVDAVEWSVKGKFVAVAKKNV-LSILT 220 (1324)
Q Consensus 180 L~Vldl~e~-lk~V----a--sgVScVcWSPKGKQLVVGlaDG-IsQyT 220 (1324)
||||++..+ +..+ . .+++|++|+|-|+.|+.+.+++ +..|+
T Consensus 411 v~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 411 VYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred EEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 999999755 2222 1 3699999999999999999998 88774
No 56
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=97.59 E-value=0.0013 Score=73.41 Aligned_cols=150 Identities=11% Similarity=0.095 Sum_probs=104.5
Q ss_pred eeeeecCCCCCeeEEEEecCCCEEEEEeecCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeC
Q 000733 98 SVVDVPFENENVDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNV 177 (1324)
Q Consensus 98 ~vi~VPLp~s~VshLAFSsDEs~LAVcaesGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsD 177 (1324)
|..+++-+++.|.-|.+++|...||++. ...|++||+++- +..|..++.... ..|..+-|-- ...-...-+.|
T Consensus 32 C~rTiqh~dsqVNrLeiTpdk~~LAaa~--~qhvRlyD~~S~---np~Pv~t~e~h~-kNVtaVgF~~-dgrWMyTgseD 104 (311)
T KOG0315|consen 32 CSRTIQHPDSQVNRLEITPDKKDLAAAG--NQHVRLYDLNSN---NPNPVATFEGHT-KNVTAVGFQC-DGRWMYTGSED 104 (311)
T ss_pred EEEEEecCccceeeEEEcCCcchhhhcc--CCeeEEEEccCC---CCCceeEEeccC-CceEEEEEee-cCeEEEecCCC
Confidence 4567777788999999999999999999 779999999973 455887776531 3455665533 23356667899
Q ss_pred CeEEEEEeCCCc--ee--eecceeEEEeccCCCEEEEEecCc-eEEEccCcccccccccCccccCCCCCCCCceeEEEEE
Q 000733 178 GRLYRGGVNGPL--ED--VMDNVDAVEWSVKGKFVAVAKKNV-LSILTSKLKERLPISLSFKSWVGDCDVNCSVKVDSIR 252 (1324)
Q Consensus 178 GsL~Vldl~e~l--k~--VasgVScVcWSPKGKQLVVGlaDG-IsQyTPDgeeKkvIP~Pf~S~I~D~d~d~sV~V~SI~ 252 (1324)
|++.|||+.... +. +.+.|.||+-.|.-.-|++|.++| |.+| |+.+-.....+ ++ +.+.++.-..|.
T Consensus 105 gt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvW--Dl~~~~c~~~l----iP--e~~~~i~sl~v~ 176 (311)
T KOG0315|consen 105 GTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVW--DLGENSCTHEL----IP--EDDTSIQSLTVM 176 (311)
T ss_pred ceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEE--EccCCcccccc----CC--CCCcceeeEEEc
Confidence 999999997531 22 237899999999999999999999 9999 55433221111 11 123445555566
Q ss_pred EecCCeEEEEEE
Q 000733 253 WVRRDCIIIGCF 264 (1324)
Q Consensus 253 WLeNd~yLFg~v 264 (1324)
|-.. ++.++.
T Consensus 177 ~dgs--ml~a~n 186 (311)
T KOG0315|consen 177 PDGS--MLAAAN 186 (311)
T ss_pred CCCc--EEEEec
Confidence 6544 665553
No 57
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=97.59 E-value=0.0004 Score=81.84 Aligned_cols=176 Identities=16% Similarity=0.195 Sum_probs=112.0
Q ss_pred CCCCCCCCCCcceEeeCCcceEEEEEcCCce-EE--EEehHHHHHHhhc----------ccCCcccc--cccceeeeecC
Q 000733 40 SQFDLQNPPSLPLAVSQLSHQLIFAAHSSGF-CV--ARTNDVIDAAKEM----------KENGTRCC--VQELSVVDVPF 104 (1324)
Q Consensus 40 s~~dLP~~~sSLLAVSN~K~GLvfAAgpdGL-vV--arTsDLr~a~ksa----------~en~tv~~--~~dl~vi~VPL 104 (1324)
++...+......+.||. ---.++.+|..|. .+ +.|..++..++-+ +.+.+..+ .-++-+|.+..
T Consensus 297 ~~~g~e~~~~e~FeVSh-d~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~ 375 (514)
T KOG2055|consen 297 PPYGVEEKSMERFEVSH-DSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQ 375 (514)
T ss_pred CCCCcccchhheeEecC-CCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEEecCC
Confidence 33445556778888888 6666666666663 33 3566666554321 11111111 11122233321
Q ss_pred C--------CCCe--eEEEEecCCCEEEEEeecCCeEEEEEcccccCC-CCcceeEEecCCCcceEEEEecCCCCCeEEE
Q 000733 105 E--------NENV--DILSLSNDESTLAVSLYQSPHIHFFSVHSLLNK-EIKPSFSCSLNGSTYVKDIRWRKKPENSFLA 173 (1324)
Q Consensus 105 p--------~s~V--shLAFSsDEs~LAVcaesGg~L~VYDV~SLlng-~t~P~~sisLn~st~VrdLaWNP~~aslLAV 173 (1324)
+ ++.| ++++.|.++.+||+.... |.|.+||-.+.++. ..+|+..+.=- -+.|..|.|||+.. .+|+
T Consensus 376 ~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~-GiVNIYd~~s~~~s~~PkPik~~dNL-tt~Itsl~Fn~d~q-iLAi 452 (514)
T KOG2055|consen 376 NSCLHRFVDDGSVHGTSLCISLNGSYLATGSDS-GIVNIYDGNSCFASTNPKPIKTVDNL-TTAITSLQFNHDAQ-ILAI 452 (514)
T ss_pred cceEEEEeecCccceeeeeecCCCceEEeccCc-ceEEEeccchhhccCCCCchhhhhhh-heeeeeeeeCcchh-hhhh
Confidence 1 1223 477888899988887755 69999998888764 67777654211 26799999999654 7888
Q ss_pred EEe--CCeEEEEEeCCCceee---------ecceeEEEeccCCCEEEEEecCc-eEEEc
Q 000733 174 LSN--VGRLYRGGVNGPLEDV---------MDNVDAVEWSVKGKFVAVAKKNV-LSILT 220 (1324)
Q Consensus 174 VSs--DGsL~Vldl~e~lk~V---------asgVScVcWSPKGKQLVVGlaDG-IsQyT 220 (1324)
|++ +..|++.-+-.- ++. ...|+|+++||.|-+||+|...| +..|+
T Consensus 453 aS~~~knalrLVHvPS~-TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~k 510 (514)
T KOG2055|consen 453 ASRVKKNALRLVHVPSC-TVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFK 510 (514)
T ss_pred hhhccccceEEEeccce-eeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEe
Confidence 875 555665555321 111 36899999999999999999999 88884
No 58
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=97.59 E-value=0.00058 Score=81.11 Aligned_cols=153 Identities=13% Similarity=0.145 Sum_probs=101.6
Q ss_pred eEeeCCcceEEEEEcCCceEEEEehHHHHHHhhcccCCcccccccceeeeecCCCCCeeEEEEecCCCEEEEEeecCCeE
Q 000733 52 LAVSQLSHQLIFAAHSSGFCVARTNDVIDAAKEMKENGTRCCVQELSVVDVPFENENVDILSLSNDESTLAVSLYQSPHI 131 (1324)
Q Consensus 52 LAVSN~K~GLvfAAgpdGLvVarTsDLr~a~ksa~en~tv~~~~dl~vi~VPLp~s~VshLAFSsDEs~LAVcaesGg~L 131 (1324)
.+||| -...||.|+-.+++|-.... . +.+..+.++ +.--++..|...-+.+|+.+|+|..+ ...|
T Consensus 425 vtIS~-~trhVyTgGkgcVKVWdis~-------p---g~k~PvsqL---dcl~rdnyiRSckL~pdgrtLivGGe-astl 489 (705)
T KOG0639|consen 425 VTISN-PTRHVYTGGKGCVKVWDISQ-------P---GNKSPVSQL---DCLNRDNYIRSCKLLPDGRTLIVGGE-ASTL 489 (705)
T ss_pred EEecC-CcceeEecCCCeEEEeeccC-------C---CCCCccccc---cccCcccceeeeEecCCCceEEeccc-ccee
Confidence 45677 77777777777777652211 1 111222332 12123557888899999999999987 5789
Q ss_pred EEEEcccccCCCCcceeEEec-CCCcceEEEEecCCCCCeEEEEEeCCeEEEEEeCCCcee-----eecceeEEEeccCC
Q 000733 132 HFFSVHSLLNKEIKPSFSCSL-NGSTYVKDIRWRKKPENSFLALSNVGRLYRGGVNGPLED-----VMDNVDAVEWSVKG 205 (1324)
Q Consensus 132 ~VYDV~SLlng~t~P~~sisL-n~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl~e~lk~-----VasgVScVcWSPKG 205 (1324)
.|||+.+=..- +. ..+ ...-.-.+|+-||+.. .+..|.+||++.|||+.+...+ +.+|++|+.-|++|
T Consensus 490 siWDLAapTpr-ik----aeltssapaCyALa~spDak-vcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dG 563 (705)
T KOG0639|consen 490 SIWDLAAPTPR-IK----AELTSSAPACYALAISPDAK-VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDG 563 (705)
T ss_pred eeeeccCCCcc-hh----hhcCCcchhhhhhhcCCccc-eeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCC
Confidence 99998864321 00 001 0012345688888665 5556667999999999876222 24899999999999
Q ss_pred CEEEEEecCc-eEEEccCccccc
Q 000733 206 KFVAVAKKNV-LSILTSKLKERL 227 (1324)
Q Consensus 206 KQLVVGlaDG-IsQyTPDgeeKk 227 (1324)
..|=.|.-|- |.-| |+.+.+
T Consensus 564 tklWTGGlDntvRcW--Dlregr 584 (705)
T KOG0639|consen 564 TKLWTGGLDNTVRCW--DLREGR 584 (705)
T ss_pred ceeecCCCccceeeh--hhhhhh
Confidence 9999998887 8888 554443
No 59
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=97.55 E-value=0.0039 Score=76.38 Aligned_cols=147 Identities=16% Similarity=0.214 Sum_probs=100.2
Q ss_pred CCcceEeeCCcceEEEEEcCCceEE-EEehHHHHHHhhcccCCcccccccceeeeecCCCCCeeEEEEecCCCEEEEEee
Q 000733 48 PSLPLAVSQLSHQLIFAAHSSGFCV-ARTNDVIDAAKEMKENGTRCCVQELSVVDVPFENENVDILSLSNDESTLAVSLY 126 (1324)
Q Consensus 48 ~sSLLAVSN~K~GLvfAAgpdGLvV-arTsDLr~a~ksa~en~tv~~~~dl~vi~VPLp~s~VshLAFSsDEs~LAVcae 126 (1324)
.---||.|+ +-+-++++..+|.+= ..... . .+.. .+++.|- +..|.+|+++..+....+..
T Consensus 27 ~I~slA~s~-kS~~lAvsRt~g~IEiwN~~~------~-------w~~~--~vi~g~~-drsIE~L~W~e~~RLFS~g~- 88 (691)
T KOG2048|consen 27 EIVSLAYSH-KSNQLAVSRTDGNIEIWNLSN------N-------WFLE--PVIHGPE-DRSIESLAWAEGGRLFSSGL- 88 (691)
T ss_pred ceEEEEEec-cCCceeeeccCCcEEEEccCC------C-------ceee--EEEecCC-CCceeeEEEccCCeEEeecC-
Confidence 345588888 888878777777332 21110 0 1111 1244432 46899999995555444444
Q ss_pred cCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEEEEeCCCcee----e---ecceeEE
Q 000733 127 QSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGGVNGPLED----V---MDNVDAV 199 (1324)
Q Consensus 127 sGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl~e~lk~----V---asgVScV 199 (1324)
.|.|..||+.++. +.+.+..++ ..|=+++-||... .++|-..||.|+.++++..... + .++|.|+
T Consensus 89 -sg~i~EwDl~~lk-----~~~~~d~~g-g~IWsiai~p~~~-~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLsl 160 (691)
T KOG2048|consen 89 -SGSITEWDLHTLK-----QKYNIDSNG-GAIWSIAINPENT-ILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSL 160 (691)
T ss_pred -CceEEEEecccCc-----eeEEecCCC-cceeEEEeCCccc-eEEeecCCceEEEEecCCceEEEEeecccccceEEEE
Confidence 5799999999864 344455544 5788888888553 5666669998888888754211 1 3799999
Q ss_pred EeccCCCEEEEEecCc-eEEEc
Q 000733 200 EWSVKGKFVAVAKKNV-LSILT 220 (1324)
Q Consensus 200 cWSPKGKQLVVGlaDG-IsQyT 220 (1324)
+|.|+|+.||.|+.|| |.+|.
T Consensus 161 sw~~~~~~i~~Gs~Dg~Iriwd 182 (691)
T KOG2048|consen 161 SWNPTGTKIAGGSIDGVIRIWD 182 (691)
T ss_pred EecCCccEEEecccCceEEEEE
Confidence 9999999999999999 99994
No 60
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=97.52 E-value=0.00051 Score=80.33 Aligned_cols=113 Identities=17% Similarity=0.191 Sum_probs=90.4
Q ss_pred CeeEEEEecCCCEEEEEeecCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCC-CCeEEEEEeCCeEEEEEeC
Q 000733 108 NVDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKP-ENSFLALSNVGRLYRGGVN 186 (1324)
Q Consensus 108 ~VshLAFSsDEs~LAVcaesGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~-aslLAVVSsDGsL~Vldl~ 186 (1324)
+|..+.||.|+..||.|.-+ |.+.||++.++- ...-|. ++...|-++.|.|.. ...+|.|+.||++.+|++.
T Consensus 177 Pis~~~fS~ds~~laT~sws-G~~kvW~~~~~~--~~~~l~----gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~ 249 (459)
T KOG0272|consen 177 PISGCSFSRDSKHLATGSWS-GLVKVWSVPQCN--LLQTLR----GHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLS 249 (459)
T ss_pred cceeeEeecCCCeEEEeecC-CceeEeecCCcc--eeEEEe----ccccceeeEEEccCCCccceeeeccCCceeeeccC
Confidence 57899999999999888765 689999999872 233333 345789999999995 6689999999999999997
Q ss_pred CC-----ceeeecceeEEEeccCCCEEEEEecCc-eEEEccCccccccc
Q 000733 187 GP-----LEDVMDNVDAVEWSVKGKFVAVAKKNV-LSILTSKLKERLPI 229 (1324)
Q Consensus 187 e~-----lk~VasgVScVcWSPKGKQLVVGlaDG-IsQyTPDgeeKkvI 229 (1324)
.. ++-+..+|..|+|.|.||.|+.|+-|- -..| |++.+.++
T Consensus 250 ~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlW--D~~tk~El 296 (459)
T KOG0272|consen 250 QETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLW--DLETKSEL 296 (459)
T ss_pred CCcchhhhhcchhhheeeeecCCCceeeecccccchhhc--ccccchhh
Confidence 53 123358999999999999999999998 7777 55555444
No 61
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=97.49 E-value=0.047 Score=62.40 Aligned_cols=252 Identities=13% Similarity=0.091 Sum_probs=138.2
Q ss_pred CCCcceEeeCCcceEEEEEcCC-----ceEEEEehHHHHHHhhcccCCcccccccceeeeecCCCCCeeEEEEecCCCEE
Q 000733 47 PPSLPLAVSQLSHQLIFAAHSS-----GFCVARTNDVIDAAKEMKENGTRCCVQELSVVDVPFENENVDILSLSNDESTL 121 (1324)
Q Consensus 47 ~~sSLLAVSN~K~GLvfAAgpd-----GLvVarTsDLr~a~ksa~en~tv~~~~dl~vi~VPLp~s~VshLAFSsDEs~L 121 (1324)
...+.|+++. ...++++++.. ++..++..+- .... .. +-.++.....+.||++++|+.+|
T Consensus 37 ~~Ps~l~~~~-~~~~LY~~~e~~~~~g~v~~~~i~~~---------~g~L---~~--~~~~~~~g~~p~~i~~~~~g~~l 101 (345)
T PF10282_consen 37 ENPSWLAVSP-DGRRLYVVNEGSGDSGGVSSYRIDPD---------TGTL---TL--LNSVPSGGSSPCHIAVDPDGRFL 101 (345)
T ss_dssp SSECCEEE-T-TSSEEEEEETTSSTTTEEEEEEEETT---------TTEE---EE--EEEEEESSSCEEEEEECTTSSEE
T ss_pred CCCceEEEEe-CCCEEEEEEccccCCCCEEEEEECCC---------ccee---EE--eeeeccCCCCcEEEEEecCCCEE
Confidence 4667899988 88888888653 3444432211 0110 01 11223223478999999999999
Q ss_pred EEEeecCCeEEEEEcccccCCCCcce-eEEe-----c----CCCcceEEEEecCCCCCeEEEEEeCCeEEEEEeCCC---
Q 000733 122 AVSLYQSPHIHFFSVHSLLNKEIKPS-FSCS-----L----NGSTYVKDIRWRKKPENSFLALSNVGRLYRGGVNGP--- 188 (1324)
Q Consensus 122 AVcaesGg~L~VYDV~SLlng~t~P~-~sis-----L----n~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl~e~--- 188 (1324)
+|+...+|.|.+|++..- |..... ..+. + ..+....++.+.|+...+++...-...|+++++...
T Consensus 102 ~vany~~g~v~v~~l~~~--g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~ 179 (345)
T PF10282_consen 102 YVANYGGGSVSVFPLDDD--GSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGK 179 (345)
T ss_dssp EEEETTTTEEEEEEECTT--SEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-T
T ss_pred EEEEccCCeEEEEEccCC--cccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCce
Confidence 999888899999999862 211111 1111 1 123567789999977655555566778999998643
Q ss_pred cee---e----ecceeEEEeccCCCEEEEEecCc--eEEEccC---c--ccccccccCccccCCCCCCCCceeEEEEEEe
Q 000733 189 LED---V----MDNVDAVEWSVKGKFVAVAKKNV--LSILTSK---L--KERLPISLSFKSWVGDCDVNCSVKVDSIRWV 254 (1324)
Q Consensus 189 lk~---V----asgVScVcWSPKGKQLVVGlaDG--IsQyTPD---g--eeKkvIP~Pf~S~I~D~d~d~sV~V~SI~WL 254 (1324)
+.. + ..+..-++|+|+||.+.+..... |..|.-+ + +....++.-+. +. .+......|.=-
T Consensus 180 l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~----~~--~~~~~~~~i~is 253 (345)
T PF10282_consen 180 LTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPE----GF--TGENAPAEIAIS 253 (345)
T ss_dssp EEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCET----TS--CSSSSEEEEEE-
T ss_pred EEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccc----cc--cccCCceeEEEe
Confidence 211 1 26788899999999997777665 8888543 2 22223332110 01 111134444433
Q ss_pred cCCeEEEEEEeecCCCCcceeEEEEEecCCCCccCCCCCCeEEeecccccccccCCCCCCCcceEEEeeeccccEEEEEe
Q 000733 255 RRDCIIIGCFQLTEDGKEENYLVQVIQSKDGKITDASSEPVVLSFSDVFSDVIDDILPSGTGPYLFLTYVERWGLAISAN 334 (1324)
Q Consensus 255 eNd~yLFg~vysaeDgseEsYvV~IIrkKdgk~~~~~ss~tf~~F~D~~~~~~DDi~PFGsgP~~yl~~L~dWdLL~VAS 334 (1324)
.+..|+++.... . ....++-+...+ +.++....... .|..|+.+.. =++=++|+|++
T Consensus 254 pdg~~lyvsnr~----~-~sI~vf~~d~~~-------g~l~~~~~~~~----------~G~~Pr~~~~-s~~g~~l~Va~ 310 (345)
T PF10282_consen 254 PDGRFLYVSNRG----S-NSISVFDLDPAT-------GTLTLVQTVPT----------GGKFPRHFAF-SPDGRYLYVAN 310 (345)
T ss_dssp TTSSEEEEEECT----T-TEEEEEEECTTT-------TTEEEEEEEEE----------SSSSEEEEEE--TTSSEEEEEE
T ss_pred cCCCEEEEEecc----C-CEEEEEEEecCC-------CceEEEEEEeC----------CCCCccEEEE-eCCCCEEEEEe
Confidence 444455544321 1 122222332222 23334433221 2445766653 23337999999
Q ss_pred cCcccceeEE
Q 000733 335 RKNIDDHVVL 344 (1324)
Q Consensus 335 SaStDIgIL~ 344 (1324)
..|-.|.++-
T Consensus 311 ~~s~~v~vf~ 320 (345)
T PF10282_consen 311 QDSNTVSVFD 320 (345)
T ss_dssp TTTTEEEEEE
T ss_pred cCCCeEEEEE
Confidence 9999998853
No 62
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=97.45 E-value=0.23 Score=63.05 Aligned_cols=131 Identities=17% Similarity=0.222 Sum_probs=80.4
Q ss_pred CCCcceEeeCCcceEEEEEcCCceEEEEehHHHHHHhhcccCCcccccccc-eeeeecCCCCCeeEEEEecCCCEEEEEe
Q 000733 47 PPSLPLAVSQLSHQLIFAAHSSGFCVARTNDVIDAAKEMKENGTRCCVQEL-SVVDVPFENENVDILSLSNDESTLAVSL 125 (1324)
Q Consensus 47 ~~sSLLAVSN~K~GLvfAAgpdGLvVarTsDLr~a~ksa~en~tv~~~~dl-~vi~VPLp~s~VshLAFSsDEs~LAVca 125 (1324)
..-|||++.. |.+|+..+...++..+ .+|.......+..... -+.+ + ..-+.. .|++|.+|++|..||++.
T Consensus 32 ~~rNLl~~~d---~~L~vWd~~e~~l~~~-nlr~~~~~~~~~~~~~-~q~L~~-~~~~~f--~v~~i~~n~~g~~lal~G 103 (717)
T PF10168_consen 32 HTRNLLACRD---GDLFVWDSSECCLLTV-NLRSLESDAEGPAKSS-YQKLLP-SNPPLF--EVHQISLNPTGSLLALVG 103 (717)
T ss_pred cceeeEEEeC---CEEEEEECCCCEEEEE-eeccccccccCccccC-cceeec-CCCCce--eEEEEEECCCCCEEEEEc
Confidence 4578888876 6778887777555433 4554432221111111 1111 1 112223 699999999999999988
Q ss_pred ecCCeEEEEEccc------ccC-CCCc-ceeEEec-------CCCcceEEEEecCCC--CCeEEEEEeCCeEEEEEeCC
Q 000733 126 YQSPHIHFFSVHS------LLN-KEIK-PSFSCSL-------NGSTYVKDIRWRKKP--ENSFLALSNVGRLYRGGVNG 187 (1324)
Q Consensus 126 esGg~L~VYDV~S------Lln-g~t~-P~~sisL-------n~st~VrdLaWNP~~--aslLAVVSsDGsL~Vldl~e 187 (1324)
.. +|.|..+.. .+. |... .-.++.+ +++..|+++.|-|.. ...++|+++|+.|++||+.+
T Consensus 104 ~~--~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~ 180 (717)
T PF10168_consen 104 PR--GVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISD 180 (717)
T ss_pred CC--cEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCC
Confidence 54 566655542 222 2111 1112222 456899999999985 46899999999999999964
No 63
>PRK03629 tolB translocation protein TolB; Provisional
Probab=97.43 E-value=0.0029 Score=74.39 Aligned_cols=104 Identities=13% Similarity=0.131 Sum_probs=69.3
Q ss_pred CeeEEEEecCCCEEEEEeec--CCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEE-EeCC--eEEE
Q 000733 108 NVDILSLSNDESTLAVSLYQ--SPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLAL-SNVG--RLYR 182 (1324)
Q Consensus 108 ~VshLAFSsDEs~LAVcaes--Gg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVV-SsDG--sL~V 182 (1324)
.+...+||+||..|+.+... +..|.+|++.. |..+.+..+ . ..+.++.|+|+... +|++ ..+| .|++
T Consensus 200 ~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~---G~~~~l~~~--~--~~~~~~~~SPDG~~-La~~~~~~g~~~I~~ 271 (429)
T PRK03629 200 PLMSPAWSPDGSKLAYVTFESGRSALVIQTLAN---GAVRQVASF--P--RHNGAPAFSPDGSK-LAFALSKTGSLNLYV 271 (429)
T ss_pred ceeeeEEcCCCCEEEEEEecCCCcEEEEEECCC---CCeEEccCC--C--CCcCCeEECCCCCE-EEEEEcCCCCcEEEE
Confidence 46688999999999866532 45788888753 333333221 1 23457899997664 5544 5566 4899
Q ss_pred EEeCCC-ceee---ecceeEEEeccCCCEEEEEecC-c-eEEE
Q 000733 183 GGVNGP-LEDV---MDNVDAVEWSVKGKFVAVAKKN-V-LSIL 219 (1324)
Q Consensus 183 ldl~e~-lk~V---asgVScVcWSPKGKQLVVGlaD-G-IsQy 219 (1324)
+|+..+ .+.+ ...+.+.+|||+|++|+....+ | ..+|
T Consensus 272 ~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy 314 (429)
T PRK03629 272 MDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVY 314 (429)
T ss_pred EECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEE
Confidence 999654 2322 2467899999999999988765 4 4555
No 64
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=97.41 E-value=0.00085 Score=74.77 Aligned_cols=103 Identities=19% Similarity=0.237 Sum_probs=76.9
Q ss_pred CCeeEEEEecCCCEEEEEeecCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEEEEeC
Q 000733 107 ENVDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGGVN 186 (1324)
Q Consensus 107 s~VshLAFSsDEs~LAVcaesGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl~ 186 (1324)
+.|..+-++.||.+|.+++ |+.|.|||..+|-. +.++.+. ..|..-.-.|.. +.|+.-.+|+.+|.+|+.
T Consensus 185 s~VtSlEvs~dG~ilTia~--gssV~Fwdaksf~~-----lKs~k~P--~nV~SASL~P~k-~~fVaGged~~~~kfDy~ 254 (334)
T KOG0278|consen 185 SPVTSLEVSQDGRILTIAY--GSSVKFWDAKSFGL-----LKSYKMP--CNVESASLHPKK-EFFVAGGEDFKVYKFDYN 254 (334)
T ss_pred CCCcceeeccCCCEEEEec--CceeEEeccccccc-----eeeccCc--cccccccccCCC-ceEEecCcceEEEEEecc
Confidence 5699999999999999999 99999999998732 2222222 123333334444 567777899999999996
Q ss_pred CCce------eeecceeEEEeccCCCEEEEEecCc-eEEE
Q 000733 187 GPLE------DVMDNVDAVEWSVKGKFVAVAKKNV-LSIL 219 (1324)
Q Consensus 187 e~lk------~VasgVScVcWSPKGKQLVVGlaDG-IsQy 219 (1324)
.+.. -..+.|-||.+||+|...|.|+.|| |.+|
T Consensus 255 TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlW 294 (334)
T KOG0278|consen 255 TGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLW 294 (334)
T ss_pred CCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEE
Confidence 4422 1247999999999999999999999 6666
No 65
>PRK05137 tolB translocation protein TolB; Provisional
Probab=97.41 E-value=0.0017 Score=75.86 Aligned_cols=111 Identities=11% Similarity=0.131 Sum_probs=73.3
Q ss_pred CCeeEEEEecCCCEEEEEeec--CCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCe--EEE
Q 000733 107 ENVDILSLSNDESTLAVSLYQ--SPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGR--LYR 182 (1324)
Q Consensus 107 s~VshLAFSsDEs~LAVcaes--Gg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGs--L~V 182 (1324)
..+...+||+||..|+.+... .+.|.+|++.+ +....+.. . ...+....|+|+...++.....+|. ||+
T Consensus 202 ~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~---g~~~~l~~---~-~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~ 274 (435)
T PRK05137 202 SLVLTPRFSPNRQEITYMSYANGRPRVYLLDLET---GQRELVGN---F-PGMTFAPRFSPDGRKVVMSLSQGGNTDIYT 274 (435)
T ss_pred CCeEeeEECCCCCEEEEEEecCCCCEEEEEECCC---CcEEEeec---C-CCcccCcEECCCCCEEEEEEecCCCceEEE
Confidence 367889999999988776532 46899998764 33333221 1 1346688999976654445555665 888
Q ss_pred EEeCCC-ceeee---cceeEEEeccCCCEEEEEec-Cc---eEEEccCcc
Q 000733 183 GGVNGP-LEDVM---DNVDAVEWSVKGKFVAVAKK-NV---LSILTSKLK 224 (1324)
Q Consensus 183 ldl~e~-lk~Va---sgVScVcWSPKGKQLVVGla-DG---IsQyTPDge 224 (1324)
+|+..+ .+.+. ....+.+|||+|++||.... +| |.+|..++.
T Consensus 275 ~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~ 324 (435)
T PRK05137 275 MDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGS 324 (435)
T ss_pred EECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCC
Confidence 888644 22222 34668999999999998874 44 666655443
No 66
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=97.41 E-value=0.0018 Score=80.37 Aligned_cols=160 Identities=12% Similarity=0.136 Sum_probs=106.0
Q ss_pred CCcceEeeCCcceEEEEEcCCceEEEEehHHHHHHhhcccCCccccccc--ceeeeec---------CCCCCeeEEEEec
Q 000733 48 PSLPLAVSQLSHQLIFAAHSSGFCVARTNDVIDAAKEMKENGTRCCVQE--LSVVDVP---------FENENVDILSLSN 116 (1324)
Q Consensus 48 ~sSLLAVSN~K~GLvfAAgpdGLvVarTsDLr~a~ksa~en~tv~~~~d--l~vi~VP---------Lp~s~VshLAFSs 116 (1324)
+..|=-+.. +.-|=+..|++-|.++ +|-.-+++.....--| +.+|.++ ++ .-|+.|+|++
T Consensus 391 TVRLWh~~~-~~CL~~F~HndfVTcV-------aFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~P 461 (712)
T KOG0283|consen 391 TVRLWHPGR-KECLKVFSHNDFVTCV-------AFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSP 461 (712)
T ss_pred cEEeecCCC-cceeeEEecCCeeEEE-------EecccCCCcEeecccccceEEeecCcCeeEeehhhh-hhheeEEecc
Confidence 455555556 6666666666665544 2222233332111112 2445444 33 4689999999
Q ss_pred CCCEEEEEeecCCeEEEEEcccccCCCCcceeEEec------CCCcceEEEEecCCCCCeEEEEEeCCeEEEEEeCCC--
Q 000733 117 DESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSL------NGSTYVKDIRWRKKPENSFLALSNVGRLYRGGVNGP-- 188 (1324)
Q Consensus 117 DEs~LAVcaesGg~L~VYDV~SLlng~t~P~~sisL------n~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl~e~-- 188 (1324)
||.+-+|.... |.++||++..+.-... ..|.+ .+ ..|.-|.+.|...+-++|-++|-.++|+|..+.
T Consensus 462 dGk~avIGt~~-G~C~fY~t~~lk~~~~---~~I~~~~~Kk~~~-~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~l 536 (712)
T KOG0283|consen 462 DGKGAVIGTFN-GYCRFYDTEGLKLVSD---FHIRLHNKKKKQG-KRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDL 536 (712)
T ss_pred CCceEEEEEec-cEEEEEEccCCeEEEe---eeEeeccCccccC-ceeeeeEecCCCCCeEEEecCCCceEEEeccchhh
Confidence 99987777766 6999999997753211 12222 23 479999999998888999999999999999543
Q ss_pred ceeee-----cceeEEEeccCCCEEEEEecCc-eEEEcc
Q 000733 189 LEDVM-----DNVDAVEWSVKGKFVAVAKKNV-LSILTS 221 (1324)
Q Consensus 189 lk~Va-----sgVScVcWSPKGKQLVVGlaDG-IsQyTP 221 (1324)
+..+. ..=..+.++.+||+||+|..|- |++|.-
T Consensus 537 v~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~ 575 (712)
T KOG0283|consen 537 VHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKN 575 (712)
T ss_pred hhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeC
Confidence 11111 2334689999999999999887 999963
No 67
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=97.39 E-value=0.0023 Score=78.99 Aligned_cols=112 Identities=13% Similarity=0.081 Sum_probs=82.0
Q ss_pred eeeecCCCCCeeEEEEecCCCEEEEEeecCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCC
Q 000733 99 VVDVPFENENVDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVG 178 (1324)
Q Consensus 99 vi~VPLp~s~VshLAFSsDEs~LAVcaesGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDG 178 (1324)
+.+++-. .+....|=+.++++++.+. .|.|.+||+.+...-++.+. +...|-.+.-.|+.. .|+..+.|.
T Consensus 407 iRTi~~~--y~l~~~Fvpgd~~Iv~G~k-~Gel~vfdlaS~~l~Eti~A------HdgaIWsi~~~pD~~-g~vT~saDk 476 (888)
T KOG0306|consen 407 IRTITCG--YILASKFVPGDRYIVLGTK-NGELQVFDLASASLVETIRA------HDGAIWSISLSPDNK-GFVTGSADK 476 (888)
T ss_pred eEEeccc--cEEEEEecCCCceEEEecc-CCceEEEEeehhhhhhhhhc------cccceeeeeecCCCC-ceEEecCCc
Confidence 3455533 5666777788887666554 47999999998654333333 235788888888665 699999999
Q ss_pred eEEEEEeC---C--C-c-ee----------eecceeEEEeccCCCEEEEEecCc-eEEEc
Q 000733 179 RLYRGGVN---G--P-L-ED----------VMDNVDAVEWSVKGKFVAVAKKNV-LSILT 220 (1324)
Q Consensus 179 sL~Vldl~---e--~-l-k~----------VasgVScVcWSPKGKQLVVGlaDG-IsQyT 220 (1324)
++..|+.. + + . ++ +.+.|.||..||+||+||+|+=|- +.+|-
T Consensus 477 tVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyf 536 (888)
T KOG0306|consen 477 TVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYF 536 (888)
T ss_pred EEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEE
Confidence 99999873 1 1 1 11 237999999999999999999998 88884
No 68
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=97.39 E-value=0.00072 Score=83.34 Aligned_cols=113 Identities=15% Similarity=0.116 Sum_probs=80.4
Q ss_pred CCCeeEEEEecCCCEEEEEeecCCeEEEEEcccccC-----CCCcceeE---------------------Eec-------
Q 000733 106 NENVDILSLSNDESTLAVSLYQSPHIHFFSVHSLLN-----KEIKPSFS---------------------CSL------- 152 (1324)
Q Consensus 106 ~s~VshLAFSsDEs~LAVcaesGg~L~VYDV~SLln-----g~t~P~~s---------------------isL------- 152 (1324)
.+.|.-..|++|..+|+.|.|. +.+++|++.+... |...|..- |..
T Consensus 451 ~GPVyg~sFsPd~rfLlScSED-~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlR 529 (707)
T KOG0263|consen 451 SGPVYGCSFSPDRRFLLSCSED-SSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLR 529 (707)
T ss_pred CCceeeeeecccccceeeccCC-cceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchh
Confidence 3469999999999999999975 5789998886543 22222111 111
Q ss_pred ---CCCcceEEEEecCCCCCeEEEEEeCCeEEEEEeCCCce--e---eecceeEEEeccCCCEEEEEecCc-eEEEc
Q 000733 153 ---NGSTYVKDIRWRKKPENSFLALSNVGRLYRGGVNGPLE--D---VMDNVDAVEWSVKGKFVAVAKKNV-LSILT 220 (1324)
Q Consensus 153 ---n~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl~e~lk--~---VasgVScVcWSPKGKQLVVGlaDG-IsQyT 220 (1324)
++-.-|.++.+-|+.+ .+|.-+.|.++++||+-.+.. + +...|+|+++||.|++||.|..|| |.+|.
T Consensus 530 ifaghlsDV~cv~FHPNs~-Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWD 605 (707)
T KOG0263|consen 530 IFAGHLSDVDCVSFHPNSN-YVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWD 605 (707)
T ss_pred hhcccccccceEEECCccc-ccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEE
Confidence 2223455666666554 567778888888888865532 2 237899999999999999999999 99994
No 69
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=97.39 E-value=0.0033 Score=69.96 Aligned_cols=112 Identities=9% Similarity=0.148 Sum_probs=75.3
Q ss_pred CeeEEEEecCCCEEEEEeecCCeEEEEEcccccCCCCcc--eeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEEEEe
Q 000733 108 NVDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEIKP--SFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGGV 185 (1324)
Q Consensus 108 ~VshLAFSsDEs~LAVcaesGg~L~VYDV~SLlng~t~P--~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl 185 (1324)
.++.++|++|+.+|+|+...++.|.+|++.. .+...+ ...+.+..+...+.+.|.|+...++++...+++|.+|++
T Consensus 127 ~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~--~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~ 204 (330)
T PRK11028 127 GCHSANIDPDNRTLWVPCLKEDRIRLFTLSD--DGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQL 204 (330)
T ss_pred cccEeEeCCCCCEEEEeeCCCCEEEEEEECC--CCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEE
Confidence 5788999999999988887778999999976 222211 112223223567899999976533333344899999999
Q ss_pred CC---Cceeee------c------ceeEEEeccCCCEEEEEecC-c-eEEEcc
Q 000733 186 NG---PLEDVM------D------NVDAVEWSVKGKFVAVAKKN-V-LSILTS 221 (1324)
Q Consensus 186 ~e---~lk~Va------s------gVScVcWSPKGKQLVVGlaD-G-IsQyTP 221 (1324)
.. ..+.+. . ....+.++|+||+|+++..+ + |..|.-
T Consensus 205 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i 257 (330)
T PRK11028 205 KDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSV 257 (330)
T ss_pred eCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEE
Confidence 63 222221 1 12358899999999998664 4 888853
No 70
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=97.38 E-value=0.005 Score=72.06 Aligned_cols=158 Identities=11% Similarity=0.081 Sum_probs=107.9
Q ss_pred CCcceEeeCCcceEEEEE--cCCceEEEEehHHHHHHhhcccCCcccccccceeeeecCCCCCeeEEEEec-CCCEEEEE
Q 000733 48 PSLPLAVSQLSHQLIFAA--HSSGFCVARTNDVIDAAKEMKENGTRCCVQELSVVDVPFENENVDILSLSN-DESTLAVS 124 (1324)
Q Consensus 48 ~sSLLAVSN~K~GLvfAA--gpdGLvVarTsDLr~a~ksa~en~tv~~~~dl~vi~VPLp~s~VshLAFSs-DEs~LAVc 124 (1324)
.++++||.. +|--+..- ++..|.|+.+..+-+..+. .+-+| .+.+.|--+++++ ++..+|.|
T Consensus 36 DS~fcavNP-kfiAvi~easgGgaf~ViPl~k~Gr~d~~---------~P~v~-----GHt~~vLDi~w~PfnD~vIASg 100 (472)
T KOG0303|consen 36 DSSFCAVNP-KFVAVIIEASGGGAFLVIPLVKTGRMDAS---------YPLVC-----GHTAPVLDIDWCPFNDCVIASG 100 (472)
T ss_pred cccccccCC-ceEEEEEecCCCcceeecccccccccCCC---------CCCcc-----CccccccccccCccCCceeecC
Confidence 478889988 88666543 3344777755544322111 11111 1122456666665 55556766
Q ss_pred eecCCeEEEEEcccccC--CCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEEEEeCCCceee----ecceeE
Q 000733 125 LYQSPHIHFFSVHSLLN--KEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGGVNGPLEDV----MDNVDA 198 (1324)
Q Consensus 125 aesGg~L~VYDV~SLln--g~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl~e~lk~V----asgVSc 198 (1324)
.+. ..|.||++..-.. .-++|.-... ++...|--++|-|...+.++....|..+++||++.+..++ .+-|.+
T Consensus 101 SeD-~~v~vW~IPe~~l~~~ltepvv~L~-gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~hpd~i~S 178 (472)
T KOG0303|consen 101 SED-TKVMVWQIPENGLTRDLTEPVVELY-GHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLDHPDMVYS 178 (472)
T ss_pred CCC-ceEEEEECCCcccccCcccceEEEe-ecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecCCCCeEEE
Confidence 654 6899999875221 1344443322 4557899999999999988899999999999998663333 478999
Q ss_pred EEeccCCCEEEEEecCc-eEEEccC
Q 000733 199 VEWSVKGKFVAVAKKNV-LSILTSK 222 (1324)
Q Consensus 199 VcWSPKGKQLVVGlaDG-IsQyTPD 222 (1324)
++|+-+|.+||..++|- |.+|.|-
T Consensus 179 ~sfn~dGs~l~TtckDKkvRv~dpr 203 (472)
T KOG0303|consen 179 MSFNRDGSLLCTTCKDKKVRVIDPR 203 (472)
T ss_pred EEeccCCceeeeecccceeEEEcCC
Confidence 99999999999999999 9999873
No 71
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=97.36 E-value=0.0028 Score=75.29 Aligned_cols=170 Identities=15% Similarity=0.129 Sum_probs=114.1
Q ss_pred CcceEeeCCcceE-EEEEcCCceEEE--EehHHHHHHhhcccCCcccccccceeeeecCCCCCeeEEEEecCCCEEEEEe
Q 000733 49 SLPLAVSQLSHQL-IFAAHSSGFCVA--RTNDVIDAAKEMKENGTRCCVQELSVVDVPFENENVDILSLSNDESTLAVSL 125 (1324)
Q Consensus 49 sSLLAVSN~K~GL-vfAAgpdGLvVa--rTsDLr~a~ksa~en~tv~~~~dl~vi~VPLp~s~VshLAFSsDEs~LAVca 125 (1324)
-+-|+.|. ++-. +++++..++.++ .+..+++.+..-+ ..|+.+.|-+||..||+|.
T Consensus 29 vssl~fsp-~~P~d~aVt~S~rvqly~~~~~~~~k~~srFk--------------------~~v~s~~fR~DG~LlaaGD 87 (487)
T KOG0310|consen 29 VSSLCFSP-KHPYDFAVTSSVRVQLYSSVTRSVRKTFSRFK--------------------DVVYSVDFRSDGRLLAAGD 87 (487)
T ss_pred ceeEecCC-CCCCceEEecccEEEEEecchhhhhhhHHhhc--------------------cceeEEEeecCCeEEEccC
Confidence 34455555 5554 455556666665 4444554332211 1378888999999999998
Q ss_pred ecCCeEEEEEccc--ccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEEEEeCCCcee-----eecceeE
Q 000733 126 YQSPHIHFFSVHS--LLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGGVNGPLED-----VMDNVDA 198 (1324)
Q Consensus 126 esGg~L~VYDV~S--Llng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl~e~lk~-----VasgVSc 198 (1324)
+. |.|.+||..+ ++. .+. .+..+|+-..++|....+|+.++.|+...+||+.+.... +.+-|.|
T Consensus 88 ~s-G~V~vfD~k~r~iLR-------~~~-ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~ 158 (487)
T KOG0310|consen 88 ES-GHVKVFDMKSRVILR-------QLY-AHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRC 158 (487)
T ss_pred Cc-CcEEEeccccHHHHH-------HHh-hccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEe
Confidence 87 5899999665 221 111 234678999999988889999999999999999765221 2479999
Q ss_pred EEeccCCC-EEEEEecCc-eEEEccCcccccccccCccccCCCCCCCCceeEEEEEEecCCeE
Q 000733 199 VEWSVKGK-FVAVAKKNV-LSILTSKLKERLPISLSFKSWVGDCDVNCSVKVDSIRWVRRDCI 259 (1324)
Q Consensus 199 VcWSPKGK-QLVVGlaDG-IsQyTPDgeeKkvIP~Pf~S~I~D~d~d~sV~V~SI~WLeNd~y 259 (1324)
.+|+|-.. -+|.|+-|| |..|.- ... . +|+-+.+ +...|.+|..|.+...
T Consensus 159 g~~~~~~~hivvtGsYDg~vrl~Dt--R~~---~----~~v~eln--hg~pVe~vl~lpsgs~ 210 (487)
T KOG0310|consen 159 GDISPANDHIVVTGSYDGKVRLWDT--RSL---T----SRVVELN--HGCPVESVLALPSGSL 210 (487)
T ss_pred eccccCCCeEEEecCCCceEEEEEe--ccC---C----ceeEEec--CCCceeeEEEcCCCCE
Confidence 99999866 668899999 999932 111 1 1221223 3346889998887543
No 72
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.36 E-value=0.00036 Score=88.60 Aligned_cols=179 Identities=16% Similarity=0.182 Sum_probs=112.9
Q ss_pred ceEEEEEcCCc-eEEEEehHHHHHHhhcccCCcccccccceeeeecCCCCCeeEEEEecCCC-EEEEEeecCCeEEEEEc
Q 000733 59 HQLIFAAHSSG-FCVARTNDVIDAAKEMKENGTRCCVQELSVVDVPFENENVDILSLSNDES-TLAVSLYQSPHIHFFSV 136 (1324)
Q Consensus 59 ~GLvfAAgpdG-LvVarTsDLr~a~ksa~en~tv~~~~dl~vi~VPLp~s~VshLAFSsDEs-~LAVcaesGg~L~VYDV 136 (1324)
+||++.|+.+| +.++....+++ ..++. . +..+ .-+.+.|.-|-|+.... .||.++ ++|.|.|||+
T Consensus 80 ~GlIaGG~edG~I~ly~p~~~~~---~~~~~-~---la~~-----~~h~G~V~gLDfN~~q~nlLASGa-~~geI~iWDl 146 (1049)
T KOG0307|consen 80 HGLIAGGLEDGNIVLYDPASIIA---NASEE-V---LATK-----SKHTGPVLGLDFNPFQGNLLASGA-DDGEILIWDL 146 (1049)
T ss_pred cceeeccccCCceEEecchhhcc---CcchH-H---Hhhh-----cccCCceeeeeccccCCceeeccC-CCCcEEEecc
Confidence 47899998888 55555555521 11111 1 1111 11123577899999777 566655 5679999998
Q ss_pred ccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEEEEeCCCceee--e-----cceeEEEeccCCC-EE
Q 000733 137 HSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGGVNGPLEDV--M-----DNVDAVEWSVKGK-FV 208 (1324)
Q Consensus 137 ~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl~e~lk~V--a-----sgVScVcWSPKGK-QL 208 (1324)
..+-. |+..-..+.-..|..|.||-...+.||-.+.+|...|||+...-.++ . ..++.+.|.|++- ||
T Consensus 147 nn~~t----P~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql 222 (1049)
T KOG0307|consen 147 NKPET----PFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQL 222 (1049)
T ss_pred CCcCC----CCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceee
Confidence 87532 22211222235799999999999999999999999999998652222 1 2377899999975 88
Q ss_pred EEEecCc----eEEEccCcccccccccCccccCCCCCCCCceeEEEEEEecCC-eEEEEEE
Q 000733 209 AVAKKNV----LSILTSKLKERLPISLSFKSWVGDCDVNCSVKVDSIRWVRRD-CIIIGCF 264 (1324)
Q Consensus 209 VVGlaDG----IsQyTPDgeeKkvIP~Pf~S~I~D~d~d~sV~V~SI~WLeNd-~yLFg~v 264 (1324)
+++..|. |..| |+ |-...|.+ +.. .+.--|+++.|-..| .|++.+.
T Consensus 223 ~~As~dd~~PviqlW--Dl---R~assP~k--~~~---~H~~GilslsWc~~D~~lllSsg 273 (1049)
T KOG0307|consen 223 LVASGDDSAPVIQLW--DL---RFASSPLK--ILE---GHQRGILSLSWCPQDPRLLLSSG 273 (1049)
T ss_pred eeecCCCCCceeEee--cc---cccCCchh--hhc---ccccceeeeccCCCCchhhhccc
Confidence 8888885 5555 32 22233321 101 122248899997665 5666553
No 73
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=97.34 E-value=0.0014 Score=76.98 Aligned_cols=149 Identities=16% Similarity=0.083 Sum_probs=96.6
Q ss_pred CCeeEEEEec-CCCEEEEEeecCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEEEEe
Q 000733 107 ENVDILSLSN-DESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGGV 185 (1324)
Q Consensus 107 s~VshLAFSs-DEs~LAVcaesGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl 185 (1324)
..|.-|+|.. ++..++.|. .++.|.+||+++- ...|... ...++..|.+++|||-....||..+.|++|.+||+
T Consensus 228 ~~VeDV~~h~~h~~lF~sv~-dd~~L~iwD~R~~---~~~~~~~-~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDl 302 (422)
T KOG0264|consen 228 DVVEDVAWHPLHEDLFGSVG-DDGKLMIWDTRSN---TSKPSHS-VKAHSAEVNCVAFNPFNEFILATGSADKTVALWDL 302 (422)
T ss_pred cceehhhccccchhhheeec-CCCeEEEEEcCCC---CCCCccc-ccccCCceeEEEeCCCCCceEEeccCCCcEEEeec
Confidence 3577788875 333333333 3789999999972 2222221 22345789999999988889999999999999999
Q ss_pred CCC-cee-----eecceeEEEeccCCCEE-EEEecCc-eEEEccCccccccccc-------CccccCCCCCCCCceeEEE
Q 000733 186 NGP-LED-----VMDNVDAVEWSVKGKFV-AVAKKNV-LSILTSKLKERLPISL-------SFKSWVGDCDVNCSVKVDS 250 (1324)
Q Consensus 186 ~e~-lk~-----VasgVScVcWSPKGKQL-VVGlaDG-IsQyTPDgeeKkvIP~-------Pf~S~I~D~d~d~sV~V~S 250 (1324)
.+- ..+ +.+.|.+|.|||.-+.| |..+.|| +.+|.- .......+ |+..-| .-.+....|.+
T Consensus 303 RnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDl--s~ig~eq~~eda~dgppEllF--~HgGH~~kV~D 378 (422)
T KOG0264|consen 303 RNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDL--SRIGEEQSPEDAEDGPPELLF--IHGGHTAKVSD 378 (422)
T ss_pred hhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEec--cccccccChhhhccCCcceeE--EecCccccccc
Confidence 642 122 24899999999998766 5566778 999942 21111111 110000 12344457899
Q ss_pred EEEecCCeEEEEEE
Q 000733 251 IRWVRRDCIIIGCF 264 (1324)
Q Consensus 251 I~WLeNd~yLFg~v 264 (1324)
+.|--+.-++++.+
T Consensus 379 fsWnp~ePW~I~Sv 392 (422)
T KOG0264|consen 379 FSWNPNEPWTIASV 392 (422)
T ss_pred ccCCCCCCeEEEEe
Confidence 99977766776665
No 74
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=97.34 E-value=0.0021 Score=77.57 Aligned_cols=167 Identities=10% Similarity=0.134 Sum_probs=111.5
Q ss_pred CCCCCCCCcceEeeCCcceEEEEEcCCceEEE---EehHHHHHHhhcccCCcccccccceeeeecCCCCCeeEEEEecCC
Q 000733 42 FDLQNPPSLPLAVSQLSHQLIFAAHSSGFCVA---RTNDVIDAAKEMKENGTRCCVQELSVVDVPFENENVDILSLSNDE 118 (1324)
Q Consensus 42 ~dLP~~~sSLLAVSN~K~GLvfAAgpdGLvVa---rTsDLr~a~ksa~en~tv~~~~dl~vi~VPLp~s~VshLAFSsDE 118 (1324)
........|.+.|++ -+||+++|+.+|.+=+ |+++....+..+ ..+...+. .-..+ -|+.|+|+.||
T Consensus 171 ~~~~~~~lN~v~in~-~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~---~~v~s~pg----~~~~~--svTal~F~d~g 240 (703)
T KOG2321|consen 171 FETDSGELNVVSINE-EHGLLACGTEDGVVEFWDPRDKSRVGTLDAA---SSVNSHPG----GDAAP--SVTALKFRDDG 240 (703)
T ss_pred cccccccceeeeecC-ccceEEecccCceEEEecchhhhhheeeecc---cccCCCcc----ccccC--cceEEEecCCc
Confidence 344556789999999 9999999999996654 333332222111 01111111 00122 58999999999
Q ss_pred CEEEEEeecCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEEEEeCCC--ceee--ec
Q 000733 119 STLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGGVNGP--LEDV--MD 194 (1324)
Q Consensus 119 s~LAVcaesGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl~e~--lk~V--as 194 (1324)
+.++|.... |.+.|||+++ ..|+..-.-+.+..|+-|.|++....--++-.+...|.|||-..+ ...+ ..
T Consensus 241 L~~aVGts~-G~v~iyDLRa-----~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEpt~ 314 (703)
T KOG2321|consen 241 LHVAVGTST-GSVLIYDLRA-----SKPLLVKDHGYELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIEPTS 314 (703)
T ss_pred eeEEeeccC-CcEEEEEccc-----CCceeecccCCccceeeecccccCCCceEEecchHHhhhcccccCCceeeccccC
Confidence 999887754 6899999997 667765555556899999999984433333344555689987544 2222 24
Q ss_pred ceeEEEeccCCCEEEEEecCc--eEEEccCcc
Q 000733 195 NVDAVEWSVKGKFVAVAKKNV--LSILTSKLK 224 (1324)
Q Consensus 195 gVScVcWSPKGKQLVVGlaDG--IsQyTPDge 224 (1324)
.+--+|.=|.+=-+.+|..++ ...|-|++.
T Consensus 315 ~lND~C~~p~sGm~f~Ane~~~m~~yyiP~LG 346 (703)
T KOG2321|consen 315 DLNDFCFVPGSGMFFTANESSKMHTYYIPSLG 346 (703)
T ss_pred CcCceeeecCCceEEEecCCCcceeEEccccC
Confidence 577788889998999999998 555667654
No 75
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=97.33 E-value=0.0051 Score=69.56 Aligned_cols=147 Identities=12% Similarity=0.138 Sum_probs=103.2
Q ss_pred CCeeEEEEecC--CCEEEEEeecCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEEEE
Q 000733 107 ENVDILSLSND--ESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGG 184 (1324)
Q Consensus 107 s~VshLAFSsD--Es~LAVcaesGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vld 184 (1324)
+=|+||.|++. +-+++.+. -+..|.+||.+.+.....- +++...+..+..+|+.. .+|--..||.+++||
T Consensus 149 ~WVscvrfsP~~~~p~Ivs~s-~DktvKvWnl~~~~l~~~~------~gh~~~v~t~~vSpDGs-lcasGgkdg~~~Lwd 220 (315)
T KOG0279|consen 149 EWVSCVRFSPNESNPIIVSAS-WDKTVKVWNLRNCQLRTTF------IGHSGYVNTVTVSPDGS-LCASGGKDGEAMLWD 220 (315)
T ss_pred CcEEEEEEcCCCCCcEEEEcc-CCceEEEEccCCcchhhcc------ccccccEEEEEECCCCC-EEecCCCCceEEEEE
Confidence 46899999998 55554444 4579999999987542211 23457899999999654 788888999999999
Q ss_pred eCCCceee----ecceeEEEeccCCCEEEEEecCceEEEccCcccccccccC-ccccCCCCCCCCceeEEEEEEecCCeE
Q 000733 185 VNGPLEDV----MDNVDAVEWSVKGKFVAVAKKNVLSILTSKLKERLPISLS-FKSWVGDCDVNCSVKVDSIRWVRRDCI 259 (1324)
Q Consensus 185 l~e~lk~V----asgVScVcWSPKGKQLVVGlaDGIsQyTPDgeeKkvIP~P-f~S~I~D~d~d~sV~V~SI~WLeNd~y 259 (1324)
+.++-.+. .+.|-+.|+||.-=-|+++.+.+|.+| +++.+++|.-- ++ .++....-+..+..++.|-....-
T Consensus 221 L~~~k~lysl~a~~~v~sl~fspnrywL~~at~~sIkIw--dl~~~~~v~~l~~d-~~g~s~~~~~~~clslaws~dG~t 297 (315)
T KOG0279|consen 221 LNEGKNLYSLEAFDIVNSLCFSPNRYWLCAATATSIKIW--DLESKAVVEELKLD-GIGPSSKAGDPICLSLAWSADGQT 297 (315)
T ss_pred ccCCceeEeccCCCeEeeEEecCCceeEeeccCCceEEE--eccchhhhhhcccc-ccccccccCCcEEEEEEEcCCCcE
Confidence 98763222 378899999999999999999999999 56666655321 10 111111223468899999854444
Q ss_pred EEEEE
Q 000733 260 IIGCF 264 (1324)
Q Consensus 260 LFg~v 264 (1324)
+|+..
T Consensus 298 Lf~g~ 302 (315)
T KOG0279|consen 298 LFAGY 302 (315)
T ss_pred EEeee
Confidence 55554
No 76
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=97.30 E-value=0.0028 Score=73.31 Aligned_cols=147 Identities=13% Similarity=0.077 Sum_probs=106.7
Q ss_pred CCCcceEeeCCcceEEEEEcCCce-EEEEehHHHHHHhhcccCCcccccccceeeeecCCCCCeeEEEEecCCCEEEEEe
Q 000733 47 PPSLPLAVSQLSHQLIFAAHSSGF-CVARTNDVIDAAKEMKENGTRCCVQELSVVDVPFENENVDILSLSNDESTLAVSL 125 (1324)
Q Consensus 47 ~~sSLLAVSN~K~GLvfAAgpdGL-vVarTsDLr~a~ksa~en~tv~~~~dl~vi~VPLp~s~VshLAFSsDEs~LAVca 125 (1324)
..+.=+|||+ ++-++|.++.++. ++..+++ .+. ++++. --|. .|.+|++.+--.+|+.|.
T Consensus 194 ~~vr~vavS~-rHpYlFs~gedk~VKCwDLe~-nkv------------IR~Yh---GHlS--~V~~L~lhPTldvl~t~g 254 (460)
T KOG0285|consen 194 ETVRGVAVSK-RHPYLFSAGEDKQVKCWDLEY-NKV------------IRHYH---GHLS--GVYCLDLHPTLDVLVTGG 254 (460)
T ss_pred heeeeeeecc-cCceEEEecCCCeeEEEechh-hhh------------HHHhc---cccc--eeEEEeccccceeEEecC
Confidence 3677899999 9999999998874 4442221 111 12211 1122 689999988777777766
Q ss_pred ecCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEEEEeCCCceee-----ecceeEEE
Q 000733 126 YQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGGVNGPLEDV-----MDNVDAVE 200 (1324)
Q Consensus 126 esGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl~e~lk~V-----asgVScVc 200 (1324)
++..++|||+++=. +++.+. ++..+|..+..+|..+ -++.++.|+++..||+..+-+++ .--|.|+|
T Consensus 255 -rDst~RvWDiRtr~-----~V~~l~-GH~~~V~~V~~~~~dp-qvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~ 326 (460)
T KOG0285|consen 255 -RDSTIRVWDIRTRA-----SVHVLS-GHTNPVASVMCQPTDP-QVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALC 326 (460)
T ss_pred -CcceEEEeeecccc-----eEEEec-CCCCcceeEEeecCCC-ceEEecCCceEEEeeeccCceeEeeecccceeeEEe
Confidence 45799999999733 233221 3346788999999777 48899999999999997663333 36789999
Q ss_pred eccCCCEEEEEecCceEEEc
Q 000733 201 WSVKGKFVAVAKKNVLSILT 220 (1324)
Q Consensus 201 WSPKGKQLVVGlaDGIsQyT 220 (1324)
-.||-...|.++.|.|.+|+
T Consensus 327 lhP~e~~fASas~dnik~w~ 346 (460)
T KOG0285|consen 327 LHPKENLFASASPDNIKQWK 346 (460)
T ss_pred cCCchhhhhccCCccceecc
Confidence 99999999999999999995
No 77
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=97.26 E-value=0.0056 Score=69.74 Aligned_cols=161 Identities=14% Similarity=0.150 Sum_probs=100.5
Q ss_pred CCCcceEeeCCcceEEEEE--cCCceEEEEehHHHHHHhhcccCCcccccccceeeeecCCCCCeeEEEEecCCCEEEEE
Q 000733 47 PPSLPLAVSQLSHQLIFAA--HSSGFCVARTNDVIDAAKEMKENGTRCCVQELSVVDVPFENENVDILSLSNDESTLAVS 124 (1324)
Q Consensus 47 ~~sSLLAVSN~K~GLvfAA--gpdGLvVarTsDLr~a~ksa~en~tv~~~~dl~vi~VPLp~s~VshLAFSsDEs~LAVc 124 (1324)
++++-+.++. ....+++. +.+.+.+++.+.-... ... ...+.+|.. +.+.|++|++|+.+|.|.
T Consensus 144 ~h~H~v~~~p-dg~~v~v~dlG~D~v~~~~~~~~~~~--------l~~----~~~~~~~~G-~GPRh~~f~pdg~~~Yv~ 209 (345)
T PF10282_consen 144 PHPHQVVFSP-DGRFVYVPDLGADRVYVYDIDDDTGK--------LTP----VDSIKVPPG-SGPRHLAFSPDGKYAYVV 209 (345)
T ss_dssp TCEEEEEE-T-TSSEEEEEETTTTEEEEEEE-TTS-T--------EEE----EEEEECSTT-SSEEEEEE-TTSSEEEEE
T ss_pred ccceeEEECC-CCCEEEEEecCCCEEEEEEEeCCCce--------EEE----eeccccccC-CCCcEEEEcCCcCEEEEe
Confidence 4566677776 55555555 4566777755322110 100 111344433 689999999999999999
Q ss_pred eecCCeEEEEEcccccCCCCcceeEEec-----CCCcceEEEEecCCCCCeEEEEEeCCeEEEEEeCC---Cceeee---
Q 000733 125 LYQSPHIHFFSVHSLLNKEIKPSFSCSL-----NGSTYVKDIRWRKKPENSFLALSNVGRLYRGGVNG---PLEDVM--- 193 (1324)
Q Consensus 125 aesGg~L~VYDV~SLlng~t~P~~sisL-----n~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl~e---~lk~Va--- 193 (1324)
.+-...|.+|++.. -.+.......+.+ .+.....+++.+|+...+++..-.+++|.++++.. .++.+.
T Consensus 210 ~e~s~~v~v~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~ 288 (345)
T PF10282_consen 210 NELSNTVSVFDYDP-SDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVP 288 (345)
T ss_dssp ETTTTEEEEEEEET-TTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEE
T ss_pred cCCCCcEEEEeecc-cCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEe
Confidence 98888999998882 1223333334433 11125778999998765555555677899999942 233321
Q ss_pred ---cceeEEEeccCCCEEEEEecCc--eEEEccC
Q 000733 194 ---DNVDAVEWSVKGKFVAVAKKNV--LSILTSK 222 (1324)
Q Consensus 194 ---sgVScVcWSPKGKQLVVGlaDG--IsQyTPD 222 (1324)
.....++.+|+|++|+++..++ |.+|.-|
T Consensus 289 ~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 289 TGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp ESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred CCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence 3467899999999999998775 9988643
No 78
>PRK03629 tolB translocation protein TolB; Provisional
Probab=97.23 E-value=0.0038 Score=73.33 Aligned_cols=113 Identities=17% Similarity=0.270 Sum_probs=71.6
Q ss_pred eeEEEEecCCCEEEEEeecCC--eEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCC---eEEEE
Q 000733 109 VDILSLSNDESTLAVSLYQSP--HIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVG---RLYRG 183 (1324)
Q Consensus 109 VshLAFSsDEs~LAVcaesGg--~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDG---sL~Vl 183 (1324)
+..++||+||..|+.+...++ .|++||+.+ +....+ . .+...+....|+|+.. .++.+++++ .||++
T Consensus 245 ~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~t---g~~~~l---t-~~~~~~~~~~wSPDG~-~I~f~s~~~g~~~Iy~~ 316 (429)
T PRK03629 245 NGAPAFSPDGSKLAFALSKTGSLNLYVMDLAS---GQIRQV---T-DGRSNNTEPTWFPDSQ-NLAYTSDQAGRPQVYKV 316 (429)
T ss_pred cCCeEECCCCCEEEEEEcCCCCcEEEEEECCC---CCEEEc---c-CCCCCcCceEECCCCC-EEEEEeCCCCCceEEEE
Confidence 556899999999987654333 588888764 222222 1 2224567899999765 566666543 57777
Q ss_pred EeCCC-ceeee---cceeEEEeccCCCEEEEEecC-c---eEEEccCccccccc
Q 000733 184 GVNGP-LEDVM---DNVDAVEWSVKGKFVAVAKKN-V---LSILTSKLKERLPI 229 (1324)
Q Consensus 184 dl~e~-lk~Va---sgVScVcWSPKGKQLVVGlaD-G---IsQyTPDgeeKkvI 229 (1324)
++..+ .+.+. ..+.+++|||+|++|++...+ | |..|..+......+
T Consensus 317 d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~L 370 (429)
T PRK03629 317 NINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVL 370 (429)
T ss_pred ECCCCCeEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEEe
Confidence 87643 23332 346789999999999886654 3 66665543333333
No 79
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=97.22 E-value=0.0022 Score=78.65 Aligned_cols=189 Identities=15% Similarity=0.135 Sum_probs=119.3
Q ss_pred cceeeecCCccccccCCCCC----------C--------CCCC-CCCcceEeeCCcceEE--EEEcCCceEEEEehHH--
Q 000733 22 DFFFDEIGESIPIIRDDDSQ----------F--------DLQN-PPSLPLAVSQLSHQLI--FAAHSSGFCVARTNDV-- 78 (1324)
Q Consensus 22 DFgFK~Lgk~vslLRLfss~----------~--------dLP~-~~sSLLAVSN~K~GLv--fAAgpdGLvVarTsDL-- 78 (1324)
|++|-.-+.. .++|+|.++ . .+|. .+...|..|| |-... --.+..+...+.|-..
T Consensus 419 ~~~FVSgAdE-KVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSn-Ka~~~~e~~~G~~~~~~~et~~~~~ 496 (764)
T KOG1063|consen 419 DLQFVSGADE-KVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSN-KAFFPGETNTGGEAAVCAETPLAAA 496 (764)
T ss_pred Cceeeecccc-eeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccC-CCCcccccccccccceeeecccccC
Confidence 8888888774 688999876 1 2222 2567788888 65542 2222233333332211
Q ss_pred -HHHHhhcccCCcccccccceeee-e---cCCCCCeeEEEEecCCCEEEEEeec----CCeEEEEEcccccCCCCcceeE
Q 000733 79 -IDAAKEMKENGTRCCVQELSVVD-V---PFENENVDILSLSNDESTLAVSLYQ----SPHIHFFSVHSLLNKEIKPSFS 149 (1324)
Q Consensus 79 -r~a~ksa~en~tv~~~~dl~vi~-V---PLp~s~VshLAFSsDEs~LAVcaes----Gg~L~VYDV~SLlng~t~P~~s 149 (1324)
.....++- -+..++..+++ + =.++-.|+.|+.|+++.++|.|..+ -..|.+|++.+-.+...-++
T Consensus 497 p~~L~ePP~----EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~-- 570 (764)
T KOG1063|consen 497 PCELTEPPT----EDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEG-- 570 (764)
T ss_pred chhccCCCh----HHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecc--
Confidence 11111110 00111111111 1 0223368999999999999888743 56899999998765432222
Q ss_pred EecCCCcceEEEEecCCCCCeEEEEEeCCeEEEEEeCCCcee---------eecceeEEEeccCCCEEEEEecCc-eEEE
Q 000733 150 CSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGGVNGPLED---------VMDNVDAVEWSVKGKFVAVAKKNV-LSIL 219 (1324)
Q Consensus 150 isLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl~e~lk~---------VasgVScVcWSPKGKQLVVGlaDG-IsQy 219 (1324)
++-+|..|+|||+.. .++.++.|.+..+|+..+..+. +.-=+=..+|+|++||.|+++.|- +.+|
T Consensus 571 ----HsLTVT~l~FSpdg~-~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW 645 (764)
T KOG1063|consen 571 ----HSLTVTRLAFSPDGR-YLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVW 645 (764)
T ss_pred ----cceEEEEEEECCCCc-EEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEE
Confidence 346799999999765 7889999999999988654221 112234789999999999999999 9999
Q ss_pred c-cCc
Q 000733 220 T-SKL 223 (1324)
Q Consensus 220 T-PDg 223 (1324)
. |+.
T Consensus 646 ~~~~~ 650 (764)
T KOG1063|consen 646 EEPDL 650 (764)
T ss_pred eccCc
Confidence 6 344
No 80
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.22 E-value=0.0056 Score=71.12 Aligned_cols=107 Identities=15% Similarity=0.118 Sum_probs=83.8
Q ss_pred CeeEEEEecCCCEEEEEe-ecCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeE-EEEEe
Q 000733 108 NVDILSLSNDESTLAVSL-YQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRL-YRGGV 185 (1324)
Q Consensus 108 ~VshLAFSsDEs~LAVca-esGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL-~Vldl 185 (1324)
++..++++.++.+||.=. ..-|.|.+||+..|. |...|.. +...|-+|++||+.. ++|..+..|++ +|+.+
T Consensus 131 gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~-----~v~~I~a-H~~~lAalafs~~G~-llATASeKGTVIRVf~v 203 (391)
T KOG2110|consen 131 GLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQ-----PVNTINA-HKGPLAALAFSPDGT-LLATASEKGTVIRVFSV 203 (391)
T ss_pred ceEeeccCCCCceEEecCCCCCceEEEEEcccce-----eeeEEEe-cCCceeEEEECCCCC-EEEEeccCceEEEEEEc
Confidence 366777778888987755 236799999988764 3334443 347899999999654 99999999998 89999
Q ss_pred CCCceee-------ecceeEEEeccCCCEEEEEecCc-eEEEcc
Q 000733 186 NGPLEDV-------MDNVDAVEWSVKGKFVAVAKKNV-LSILTS 221 (1324)
Q Consensus 186 ~e~lk~V-------asgVScVcWSPKGKQLVVGlaDG-IsQyTP 221 (1324)
.++.++. ..++-++|+||+++.|++.+..+ |.+|+-
T Consensus 204 ~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL 247 (391)
T KOG2110|consen 204 PEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKL 247 (391)
T ss_pred CCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEe
Confidence 8775543 25777899999999999999999 999964
No 81
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=97.21 E-value=0.0058 Score=68.92 Aligned_cols=115 Identities=11% Similarity=0.143 Sum_probs=87.4
Q ss_pred eeeecCCCCCeeEEEEecCCCEEEEEeecCCeEEEEEcccccCCCCcceeEEec--CCCcceEEEEecCCCCCeEEEEEe
Q 000733 99 VVDVPFENENVDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSL--NGSTYVKDIRWRKKPENSFLALSN 176 (1324)
Q Consensus 99 vi~VPLp~s~VshLAFSsDEs~LAVcaesGg~L~VYDV~SLlng~t~P~~sisL--n~st~VrdLaWNP~~aslLAVVSs 176 (1324)
+..++.+...|..||||++|.+||.|.. +..|-||++.. + .-|.-+.+ ++..-|+.+.|-|.-. +|+-++-
T Consensus 98 v~~lEGHEnEVK~Vaws~sG~~LATCSR-DKSVWiWe~de---d--dEfec~aVL~~HtqDVK~V~WHPt~d-lL~S~SY 170 (312)
T KOG0645|consen 98 VATLEGHENEVKCVAWSASGNYLATCSR-DKSVWIWEIDE---D--DEFECIAVLQEHTQDVKHVIWHPTED-LLFSCSY 170 (312)
T ss_pred EeeeeccccceeEEEEcCCCCEEEEeeC-CCeEEEEEecC---C--CcEEEEeeeccccccccEEEEcCCcc-eeEEecc
Confidence 3556666668999999999999999984 57899998872 1 11111222 3456799999999654 8999999
Q ss_pred CCeEEEEEeC-CC----ceee---ecceeEEEeccCCCEEEEEecCc-eEEEc
Q 000733 177 VGRLYRGGVN-GP----LEDV---MDNVDAVEWSVKGKFVAVAKKNV-LSILT 220 (1324)
Q Consensus 177 DGsL~Vldl~-e~----lk~V---asgVScVcWSPKGKQLVVGlaDG-IsQyT 220 (1324)
|.++.+|.-. +. ...+ ..-|=|+++.+.|..||.+..|| +.+|.
T Consensus 171 DnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~ 223 (312)
T KOG0645|consen 171 DNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWR 223 (312)
T ss_pred CCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeee
Confidence 9999999765 32 1122 24788999999999999999999 99995
No 82
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.17 E-value=0.0025 Score=71.01 Aligned_cols=134 Identities=19% Similarity=0.234 Sum_probs=96.1
Q ss_pred CeeEEEEecCCCEEEEEeecCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEe-cCCCCCeEEEEEeCCeEEEEEeC
Q 000733 108 NVDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRW-RKKPENSFLALSNVGRLYRGGVN 186 (1324)
Q Consensus 108 ~VshLAFSsDEs~LAVcaesGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaW-NP~~aslLAVVSsDGsL~Vldl~ 186 (1324)
-|+.+.+.--|..||.|. +++.|.+|+++. +++..++.+.+ +++.+|-+++| +|...+.+|-|+-||.+.||+..
T Consensus 13 ~IHda~lDyygkrlATcs-SD~tVkIf~v~~--n~~s~ll~~L~-Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~ 88 (299)
T KOG1332|consen 13 MIHDAQLDYYGKRLATCS-SDGTVKIFEVRN--NGQSKLLAELT-GHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEE 88 (299)
T ss_pred hhhHhhhhhhcceeeeec-CCccEEEEEEcC--CCCceeeeEec-CCCCCeeEEeecccccCcEeeEeecCceEEEEecC
Confidence 355566666688899988 457999999986 34445555433 45678999999 56778899999999999999987
Q ss_pred CCc--e-----eeecceeEEEeccC--CCEEEEEecCc-eEEEccCc---ccccccccCccccCCCCCCCCceeEEEEEE
Q 000733 187 GPL--E-----DVMDNVDAVEWSVK--GKFVAVAKKNV-LSILTSKL---KERLPISLSFKSWVGDCDVNCSVKVDSIRW 253 (1324)
Q Consensus 187 e~l--k-----~VasgVScVcWSPK--GKQLVVGlaDG-IsQyTPDg---eeKkvIP~Pf~S~I~D~d~d~sV~V~SI~W 253 (1324)
.+. + .+..-|.||||-|- |=.|++|+.|| |.+++-+. -....|..-+ .+-|.+|.|
T Consensus 89 ~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH-----------~~GvnsVsw 157 (299)
T KOG1332|consen 89 NGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAH-----------EIGVNSVSW 157 (299)
T ss_pred CCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhcc-----------ccccceeee
Confidence 651 1 23478999999987 67889999999 77775432 2223333222 245889999
Q ss_pred ecC
Q 000733 254 VRR 256 (1324)
Q Consensus 254 LeN 256 (1324)
-..
T Consensus 158 apa 160 (299)
T KOG1332|consen 158 APA 160 (299)
T ss_pred cCc
Confidence 755
No 83
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=97.16 E-value=0.0035 Score=73.84 Aligned_cols=142 Identities=13% Similarity=0.208 Sum_probs=94.1
Q ss_pred EEEecCCCEEEEEeecCCeEEEEEcccccCC--CCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEEEEeCC-C
Q 000733 112 LSLSNDESTLAVSLYQSPHIHFFSVHSLLNK--EIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGGVNG-P 188 (1324)
Q Consensus 112 LAFSsDEs~LAVcaesGg~L~VYDV~SLlng--~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl~e-~ 188 (1324)
|+++.......+...+++.|.+||+.+.-.- ...|...+ -.++..|.|++|.|-...+|+.|..||.|.|||+.. .
T Consensus 183 lsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~-~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~ 261 (422)
T KOG0264|consen 183 LSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIF-SGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNT 261 (422)
T ss_pred cccccccceeEeeccCCCcEEEEeccccccCCccccceEEe-ecCCcceehhhccccchhhheeecCCCeEEEEEcCCCC
Confidence 5565432222233334789999999987642 23343322 245689999999999999999999999999999973 1
Q ss_pred c------eeeecceeEEEeccCCCE-EEEEecCc-eEEEccCcccccccccCccccCCCCCCCCceeEEEEEEecCCeEE
Q 000733 189 L------EDVMDNVDAVEWSVKGKF-VAVAKKNV-LSILTSKLKERLPISLSFKSWVGDCDVNCSVKVDSIRWVRRDCII 260 (1324)
Q Consensus 189 l------k~VasgVScVcWSPKGKQ-LVVGlaDG-IsQyTPDgeeKkvIP~Pf~S~I~D~d~d~sV~V~SI~WLeNd~yL 260 (1324)
. +.+...|-|++|.|.+.. ||.|+.|+ |..|.. |.+..|+- .+ ....-.|..|.|--.+.-+
T Consensus 262 ~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDl-----RnL~~~lh-~~----e~H~dev~~V~WSPh~etv 331 (422)
T KOG0264|consen 262 SKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDL-----RNLNKPLH-TF----EGHEDEVFQVEWSPHNETV 331 (422)
T ss_pred CCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeec-----hhcccCce-ec----cCCCcceEEEEeCCCCCce
Confidence 1 122478999999999775 57788899 999943 22222310 11 1112269999997555445
Q ss_pred EEEE
Q 000733 261 IGCF 264 (1324)
Q Consensus 261 Fg~v 264 (1324)
++..
T Consensus 332 LASS 335 (422)
T KOG0264|consen 332 LASS 335 (422)
T ss_pred eEec
Confidence 5554
No 84
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=97.16 E-value=0.0044 Score=70.64 Aligned_cols=148 Identities=16% Similarity=0.132 Sum_probs=90.6
Q ss_pred cceEEEEEcCCceEEEEehHHHHHHhhcccCCcccccccceeeeecCCCCCeeEEEEecCCCEEEEEeecCCeEEEEEcc
Q 000733 58 SHQLIFAAHSSGFCVARTNDVIDAAKEMKENGTRCCVQELSVVDVPFENENVDILSLSNDESTLAVSLYQSPHIHFFSVH 137 (1324)
Q Consensus 58 K~GLvfAAgpdGLvVarTsDLr~a~ksa~en~tv~~~~dl~vi~VPLp~s~VshLAFSsDEs~LAVcaesGg~L~VYDV~ 137 (1324)
--||+||++..+- .+++=|+|..-+.+- . ... +..+- .....+|-||+||.+|.++.+. +.+++.|.-
T Consensus 150 p~GLifA~~~~~~-~IkLyD~Rs~dkgPF-------~-tf~-i~~~~-~~ew~~l~FS~dGK~iLlsT~~-s~~~~lDAf 217 (311)
T KOG1446|consen 150 PEGLIFALANGSE-LIKLYDLRSFDKGPF-------T-TFS-ITDND-EAEWTDLEFSPDGKSILLSTNA-SFIYLLDAF 217 (311)
T ss_pred CCCcEEEEecCCC-eEEEEEecccCCCCc-------e-eEc-cCCCC-ccceeeeEEcCCCCEEEEEeCC-CcEEEEEcc
Confidence 3678777754432 344557776543321 1 001 11111 2378999999999999988844 577777743
Q ss_pred cccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEEEEeCCCceee------ecceeEEEeccCCCEEEEE
Q 000733 138 SLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGGVNGPLEDV------MDNVDAVEWSVKGKFVAVA 211 (1324)
Q Consensus 138 SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl~e~lk~V------asgVScVcWSPKGKQLVVG 211 (1324)
+ |....-++...+.+..-.+-.+.|+.. .+.....||.|.||++..+.++. ...++|+-|.|+=-+.|.+
T Consensus 218 ~---G~~~~tfs~~~~~~~~~~~a~ftPds~-Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa 293 (311)
T KOG1446|consen 218 D---GTVKSTFSGYPNAGNLPLSATFTPDSK-FVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSA 293 (311)
T ss_pred C---CcEeeeEeeccCCCCcceeEEECCCCc-EEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeec
Confidence 3 433322222223222224666778554 45566778999999997664332 3578999999998888744
Q ss_pred ecCceEEEccC
Q 000733 212 KKNVLSILTSK 222 (1324)
Q Consensus 212 laDGIsQyTPD 222 (1324)
..+ +..|.|+
T Consensus 294 ~s~-l~fw~p~ 303 (311)
T KOG1446|consen 294 SSN-LVFWLPD 303 (311)
T ss_pred Cce-EEEEecc
Confidence 333 8889886
No 85
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=97.15 E-value=0.033 Score=63.78 Aligned_cols=136 Identities=10% Similarity=0.081 Sum_probs=95.2
Q ss_pred ecCCCCCeeEEEEecCCCEEEEEeecCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEE
Q 000733 102 VPFENENVDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLY 181 (1324)
Q Consensus 102 VPLp~s~VshLAFSsDEs~LAVcaesGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~ 181 (1324)
+|...+.|..+.|++||.+||.... +-.|.+|.|..-. +.+...+ .++..|-++.|+++.+ .+.-|..|.+++
T Consensus 43 l~gh~geI~~~~F~P~gs~~aSgG~-Dr~I~LWnv~gdc----eN~~~lk-gHsgAVM~l~~~~d~s-~i~S~gtDk~v~ 115 (338)
T KOG0265|consen 43 LPGHKGEIYTIKFHPDGSCFASGGS-DRAIVLWNVYGDC----ENFWVLK-GHSGAVMELHGMRDGS-HILSCGTDKTVR 115 (338)
T ss_pred cCCCcceEEEEEECCCCCeEeecCC-cceEEEEeccccc----cceeeec-cccceeEeeeeccCCC-EEEEecCCceEE
Confidence 3333457999999999998877663 4589999987443 3333333 4567899999999766 688899999999
Q ss_pred EEEeCCCce-----eeecceeEEEeccCCCEEEEEec-Cc-eEEEccCcccccccccCccccCCCCCCCCceeEEEEEEe
Q 000733 182 RGGVNGPLE-----DVMDNVDAVEWSVKGKFVAVAKK-NV-LSILTSKLKERLPISLSFKSWVGDCDVNCSVKVDSIRWV 254 (1324)
Q Consensus 182 Vldl~e~lk-----~VasgVScVcWSPKGKQLVVGla-DG-IsQyTPDgeeKkvIP~Pf~S~I~D~d~d~sV~V~SI~WL 254 (1324)
+||+..+.. ....-|.+++=+..|-|||+-.. || +..| |...|..|-.+. +...+.++.|=
T Consensus 116 ~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~--D~R~k~~~~t~~----------~kyqltAv~f~ 183 (338)
T KOG0265|consen 116 GWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLW--DIRKKEAIKTFE----------NKYQLTAVGFK 183 (338)
T ss_pred EEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEE--eecccchhhccc----------cceeEEEEEec
Confidence 999976522 22345566666688999977555 46 9999 666555554442 23467888885
Q ss_pred cC
Q 000733 255 RR 256 (1324)
Q Consensus 255 eN 256 (1324)
.+
T Consensus 184 d~ 185 (338)
T KOG0265|consen 184 DT 185 (338)
T ss_pred cc
Confidence 43
No 86
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=97.14 E-value=0.017 Score=68.88 Aligned_cols=112 Identities=15% Similarity=0.105 Sum_probs=86.9
Q ss_pred CeeEEEEecCCCEEEEEeecCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEEEEeCC
Q 000733 108 NVDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGGVNG 187 (1324)
Q Consensus 108 ~VshLAFSsDEs~LAVcaesGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl~e 187 (1324)
.|+.+-|++++.++++....+..+.+||+..-. . ..++. ++...||+..|.|...++++.-+-||.+.+||+..
T Consensus 112 pv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~----v-~~~l~-~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~ 185 (487)
T KOG0310|consen 112 PVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAY----V-QAELS-GHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRS 185 (487)
T ss_pred ceeEEEecccCCeEEEecCCCceEEEEEcCCcE----E-EEEec-CCcceeEeeccccCCCeEEEecCCCceEEEEEecc
Confidence 488889999888887777778899999987532 1 22222 34479999999999888999999999999999964
Q ss_pred C-cee----eecceeEEEeccCCCEEEEEecCceEEEccCccccc
Q 000733 188 P-LED----VMDNVDAVEWSVKGKFVAVAKKNVLSILTSKLKERL 227 (1324)
Q Consensus 188 ~-lk~----VasgVScVcWSPKGKQLVVGlaDGIsQyTPDgeeKk 227 (1324)
. ... +...|..||.=|-|.+||.+..|-+.+| |+...+
T Consensus 186 ~~~~v~elnhg~pVe~vl~lpsgs~iasAgGn~vkVW--Dl~~G~ 228 (487)
T KOG0310|consen 186 LTSRVVELNHGCPVESVLALPSGSLIASAGGNSVKVW--DLTTGG 228 (487)
T ss_pred CCceeEEecCCCceeeEEEcCCCCEEEEcCCCeEEEE--EecCCc
Confidence 3 222 2478999999999999998888889999 554333
No 87
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=97.13 E-value=0.008 Score=74.48 Aligned_cols=144 Identities=16% Similarity=0.081 Sum_probs=102.6
Q ss_pred eecCCCCCeeEEEEecCCCEEEEEeecCCeEEEEEcccccCCCCcceeEEec-CCCcceEEEEecCCCCCeEEEEEeCCe
Q 000733 101 DVPFENENVDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSL-NGSTYVKDIRWRKKPENSFLALSNVGR 179 (1324)
Q Consensus 101 ~VPLp~s~VshLAFSsDEs~LAVcaesGg~L~VYDV~SLlng~t~P~~sisL-n~st~VrdLaWNP~~aslLAVVSsDGs 179 (1324)
.+.++ ..|.+|++|+|+.+|||+--+ ..++||-+.+|.- ..++ ++.-+|.++--+|+.. +++.++.|.+
T Consensus 504 tLel~-ddvL~v~~Spdgk~LaVsLLd-nTVkVyflDtlKF-------flsLYGHkLPV~smDIS~DSk-livTgSADKn 573 (888)
T KOG0306|consen 504 TLELE-DDVLCVSVSPDGKLLAVSLLD-NTVKVYFLDTLKF-------FLSLYGHKLPVLSMDISPDSK-LIVTGSADKN 573 (888)
T ss_pred EEecc-ccEEEEEEcCCCcEEEEEecc-CeEEEEEecceee-------eeeecccccceeEEeccCCcC-eEEeccCCCc
Confidence 45565 579999999999999998755 5899999998742 2344 4556788888888665 8999999999
Q ss_pred EEEEEeCCC---ceeee--cceeEEEeccCCCEEEEEecCc-eEEEccCcccccccccCccccCCCCCCCCceeEEEEEE
Q 000733 180 LYRGGVNGP---LEDVM--DNVDAVEWSVKGKFVAVAKKNV-LSILTSKLKERLPISLSFKSWVGDCDVNCSVKVDSIRW 253 (1324)
Q Consensus 180 L~Vldl~e~---lk~Va--sgVScVcWSPKGKQLVVGlaDG-IsQyTPDgeeKkvIP~Pf~S~I~D~d~d~sV~V~SI~W 253 (1324)
+.||-+.-+ -.+++ +.|.||-+-|+---..++++|| +.|| |++.-..|..-. ..-.+|-.+.=
T Consensus 574 VKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqW--Dg~kFe~iq~L~---------~H~~ev~cLav 642 (888)
T KOG0306|consen 574 VKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQW--DGEKFEEIQKLD---------GHHSEVWCLAV 642 (888)
T ss_pred eEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEee--chhhhhhheeec---------cchheeeeeEE
Confidence 999966432 13333 8999999999988889999999 9999 555444443210 01123333333
Q ss_pred ecCCeEEEEEEe
Q 000733 254 VRRDCIIIGCFQ 265 (1324)
Q Consensus 254 LeNd~yLFg~vy 265 (1324)
..+..|+|...+
T Consensus 643 ~~~G~~vvs~sh 654 (888)
T KOG0306|consen 643 SPNGSFVVSSSH 654 (888)
T ss_pred cCCCCeEEeccC
Confidence 456667776654
No 88
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=97.13 E-value=0.029 Score=67.49 Aligned_cols=137 Identities=11% Similarity=0.216 Sum_probs=98.6
Q ss_pred CCeeEEEEecCCCEEEEEeecCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEEEEeC
Q 000733 107 ENVDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGGVN 186 (1324)
Q Consensus 107 s~VshLAFSsDEs~LAVcaesGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl~ 186 (1324)
..+.+++|.+-| +||+.... |...|+|+.. +-+-++.+. +..+..+++||+.+ +|||-+.|+.||++-+.
T Consensus 408 d~~~~~~fhpsg-~va~Gt~~-G~w~V~d~e~------~~lv~~~~d-~~~ls~v~ysp~G~-~lAvgs~d~~iyiy~Vs 477 (626)
T KOG2106|consen 408 DPAECADFHPSG-VVAVGTAT-GRWFVLDTET------QDLVTIHTD-NEQLSVVRYSPDGA-FLAVGSHDNHIYIYRVS 477 (626)
T ss_pred CceeEeeccCcc-eEEEeecc-ceEEEEeccc------ceeEEEEec-CCceEEEEEcCCCC-EEEEecCCCeEEEEEEC
Confidence 358899999999 78887755 5778887653 334455555 57899999999665 89999999999999887
Q ss_pred CCc-ee------eecceeEEEeccCCCEEEEEecCc-eEEEccCcccccccccCccccCCCCCCCCceeEEEEEEecCCe
Q 000733 187 GPL-ED------VMDNVDAVEWSVKGKFVAVAKKNV-LSILTSKLKERLPISLSFKSWVGDCDVNCSVKVDSIRWVRRDC 258 (1324)
Q Consensus 187 e~l-k~------VasgVScVcWSPKGKQLVVGlaDG-IsQyTPDgeeKkvIP~Pf~S~I~D~d~d~sV~V~SI~WLeNd~ 258 (1324)
..- +. ..+.++.+.||+++++|+.-+.|= |..|.|.. |+- -..|-+|.|..+++
T Consensus 478 ~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~-------~~~-----------~ts~kDvkW~t~~c 539 (626)
T KOG2106|consen 478 ANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSE-------CKQ-----------ITSVKDVKWATYTC 539 (626)
T ss_pred CCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEcccc-------Ccc-----------cceecceeeeeeEE
Confidence 442 21 137889999999999998666665 88886642 110 12388999998887
Q ss_pred EE-EEEEeecCCCCc
Q 000733 259 II-IGCFQLTEDGKE 272 (1324)
Q Consensus 259 yL-Fg~vysaeDgse 272 (1324)
-+ |.++. ..|+.+
T Consensus 540 ~lGF~v~g-~s~~t~ 553 (626)
T KOG2106|consen 540 TLGFEVFG-GSDGTD 553 (626)
T ss_pred EEEEEEec-ccCCch
Confidence 65 44443 234443
No 89
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=97.11 E-value=0.0057 Score=72.70 Aligned_cols=113 Identities=22% Similarity=0.320 Sum_probs=82.1
Q ss_pred CCeeEEEEecCCCEEEEEeecCCeEEEEEccccc----CCCCcceeEEecC--------CCcceEEEEecC---------
Q 000733 107 ENVDILSLSNDESTLAVSLYQSPHIHFFSVHSLL----NKEIKPSFSCSLN--------GSTYVKDIRWRK--------- 165 (1324)
Q Consensus 107 s~VshLAFSsDEs~LAVcaesGg~L~VYDV~SLl----ng~t~P~~sisLn--------~st~VrdLaWNP--------- 165 (1324)
..|+.|+.++||..||+..++ |.+++|+...-+ .....|.++++=+ .+.-=+.+.|+-
T Consensus 236 kdVT~L~Wn~~G~~LatG~~~-G~~riw~~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f 314 (524)
T KOG0273|consen 236 KDVTSLDWNNDGTLLATGSED-GEARIWNKDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQF 314 (524)
T ss_pred CCcceEEecCCCCeEEEeecC-cEEEEEecCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEee
Confidence 479999999999999988876 699999977322 2356666655431 111122334443
Q ss_pred ------C------CCCeEEEEEeCCeEEEEEeCCC--ce-e--eecceeEEEeccCCCEEEEEecCc-eEEEc
Q 000733 166 ------K------PENSFLALSNVGRLYRGGVNGP--LE-D--VMDNVDAVEWSVKGKFVAVAKKNV-LSILT 220 (1324)
Q Consensus 166 ------~------~aslLAVVSsDGsL~Vldl~e~--lk-~--VasgVScVcWSPKGKQLVVGlaDG-IsQyT 220 (1324)
. ....||.++.||.|+|+.+++. .+ + +...|.|+-|-|.|+.|+.++.|| +.+|.
T Consensus 315 ~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs 387 (524)
T KOG0273|consen 315 EFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWS 387 (524)
T ss_pred eeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeee
Confidence 0 1247999999999999999743 22 2 247999999999999999999999 99994
No 90
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=97.11 E-value=0.0011 Score=76.69 Aligned_cols=113 Identities=17% Similarity=0.232 Sum_probs=87.8
Q ss_pred CeeEEEEecCCCEEEEEeecCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEEEEeCC
Q 000733 108 NVDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGGVNG 187 (1324)
Q Consensus 108 ~VshLAFSsDEs~LAVcaesGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl~e 187 (1324)
+..-|++++ |-+-.|++..+-.|+.||++.|.. |+..+. ++...|.|+.+||...+ |+.-+-|.+++|+.+.+
T Consensus 231 RTN~IswnP-eafnF~~a~ED~nlY~~DmR~l~~----p~~v~~-dhvsAV~dVdfsptG~E-fvsgsyDksIRIf~~~~ 303 (433)
T KOG0268|consen 231 RTNTICWNP-EAFNFVAANEDHNLYTYDMRNLSR----PLNVHK-DHVSAVMDVDFSPTGQE-FVSGSYDKSIRIFPVNH 303 (433)
T ss_pred cccceecCc-cccceeeccccccceehhhhhhcc----cchhhc-ccceeEEEeccCCCcch-hccccccceEEEeecCC
Confidence 378899999 666666665567899999999854 322211 34468999999998775 88888999999999986
Q ss_pred Cc-eee-----ecceeEEEeccCCCEEEEEecCc-eEEEccCccccc
Q 000733 188 PL-EDV-----MDNVDAVEWSVKGKFVAVAKKNV-LSILTSKLKERL 227 (1324)
Q Consensus 188 ~l-k~V-----asgVScVcWSPKGKQLVVGlaDG-IsQyTPDgeeKk 227 (1324)
+- ..+ |+.|.||-||-+-|+|+.|+.|| |..|+..-.++.
T Consensus 304 ~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Asekl 350 (433)
T KOG0268|consen 304 GHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEKL 350 (433)
T ss_pred CcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecchhhhc
Confidence 52 222 69999999999999999999999 999986544443
No 91
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=97.10 E-value=0.0042 Score=71.21 Aligned_cols=142 Identities=18% Similarity=0.159 Sum_probs=98.2
Q ss_pred CeeEEEEecCCCEEEEEeecCCeEEEEEcccccCCC---CcceeEEec-CCCcceEEEEecCCCCCeEEEEEeCCeEEEE
Q 000733 108 NVDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKE---IKPSFSCSL-NGSTYVKDIRWRKKPENSFLALSNVGRLYRG 183 (1324)
Q Consensus 108 ~VshLAFSsDEs~LAVcaesGg~L~VYDV~SLlng~---t~P~~sisL-n~st~VrdLaWNP~~aslLAVVSsDGsL~Vl 183 (1324)
.-++-|+|+||++||+|... +.|.||++-=-..|. ..-.+ .| ++...|..+++||+.. -.+.++.||+.+||
T Consensus 230 ~n~~aavSP~GRFia~~gFT-pDVkVwE~~f~kdG~fqev~rvf--~LkGH~saV~~~aFsn~S~-r~vtvSkDG~wriw 305 (420)
T KOG2096|consen 230 SNYDAAVSPDGRFIAVSGFT-PDVKVWEPIFTKDGTFQEVKRVF--SLKGHQSAVLAAAFSNSST-RAVTVSKDGKWRIW 305 (420)
T ss_pred cccceeeCCCCcEEEEecCC-CCceEEEEEeccCcchhhhhhhh--eeccchhheeeeeeCCCcc-eeEEEecCCcEEEe
Confidence 45678999999999999966 689999975322332 22233 34 4567899999999765 68899999999999
Q ss_pred EeCCC------ceeee----------cceeEEEeccCCCEEEEEecCceEEEccCcccccccccCccccCCCCCCCCcee
Q 000733 184 GVNGP------LEDVM----------DNVDAVEWSVKGKFVAVAKKNVLSILTSKLKERLPISLSFKSWVGDCDVNCSVK 247 (1324)
Q Consensus 184 dl~e~------lk~Va----------sgVScVcWSPKGKQLVVGlaDGIsQyTPDgeeKkvIP~Pf~S~I~D~d~d~sV~ 247 (1324)
|.+-+ .+.+. ++-.-++.||.|+-||+.....|..|..+ .....++-- + -++-.
T Consensus 306 dtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se--~g~~~~~~e-----~---~h~~~ 375 (420)
T KOG2096|consen 306 DTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASE--DGKDYPELE-----D---IHSTT 375 (420)
T ss_pred eccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcc--cCccchhHH-----H---hhcCc
Confidence 87421 12221 33446899999999999888889888643 122223211 1 11235
Q ss_pred EEEEEEecCCeEEEEE
Q 000733 248 VDSIRWVRRDCIIIGC 263 (1324)
Q Consensus 248 V~SI~WLeNd~yLFg~ 263 (1324)
+.+|.|-.+..|+..+
T Consensus 376 Is~is~~~~g~~~atc 391 (420)
T KOG2096|consen 376 ISSISYSSDGKYIATC 391 (420)
T ss_pred eeeEEecCCCcEEeee
Confidence 8899998887777655
No 92
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=97.10 E-value=0.0023 Score=79.06 Aligned_cols=105 Identities=10% Similarity=0.113 Sum_probs=85.1
Q ss_pred CCeeEEEEecCCCEEEEEeecCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEEEEeC
Q 000733 107 ENVDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGGVN 186 (1324)
Q Consensus 107 s~VshLAFSsDEs~LAVcaesGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl~ 186 (1324)
+.|.+++|.++..|++... .+--+++||+..-. ..-+| .++-.+|.+|+++|+. -.+|....||.|.+||+.
T Consensus 536 sDV~cv~FHPNs~Y~aTGS-sD~tVRlWDv~~G~---~VRiF---~GH~~~V~al~~Sp~G-r~LaSg~ed~~I~iWDl~ 607 (707)
T KOG0263|consen 536 SDVDCVSFHPNSNYVATGS-SDRTVRLWDVSTGN---SVRIF---TGHKGPVTALAFSPCG-RYLASGDEDGLIKIWDLA 607 (707)
T ss_pred cccceEEECCcccccccCC-CCceEEEEEcCCCc---EEEEe---cCCCCceEEEEEcCCC-ceEeecccCCcEEEEEcC
Confidence 3799999999999988764 45689999988633 32222 3455789999999954 479999999999999998
Q ss_pred CCc-----eeeecceeEEEeccCCCEEEEEecCc-eEEE
Q 000733 187 GPL-----EDVMDNVDAVEWSVKGKFVAVAKKNV-LSIL 219 (1324)
Q Consensus 187 e~l-----k~VasgVScVcWSPKGKQLVVGlaDG-IsQy 219 (1324)
.+. +-+.+.|.++.+|.+|.-||+|++|- |..|
T Consensus 608 ~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lW 646 (707)
T KOG0263|consen 608 NGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLW 646 (707)
T ss_pred CCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEE
Confidence 651 22358999999999999999999999 9999
No 93
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=97.09 E-value=0.0022 Score=73.52 Aligned_cols=196 Identities=17% Similarity=0.122 Sum_probs=123.1
Q ss_pred CCCCCCCCcceEeeCCcceEEEEEcCCceEEEEeh-HH-HHHHhhcccCCcccccccceeeeecCCCCCeeEEEEecC--
Q 000733 42 FDLQNPPSLPLAVSQLSHQLIFAAHSSGFCVARTN-DV-IDAAKEMKENGTRCCVQELSVVDVPFENENVDILSLSND-- 117 (1324)
Q Consensus 42 ~dLP~~~sSLLAVSN~K~GLvfAAgpdGLvVarTs-DL-r~a~ksa~en~tv~~~~dl~vi~VPLp~s~VshLAFSsD-- 117 (1324)
..++.-..|-++..+ ..+.|+.+|.+-+.|+... |. +.++.... -+=+++...-++.+.|
T Consensus 39 ~~I~gv~fN~~~~~~-e~~vfatvG~~rvtiy~c~~d~~ir~lq~y~---------------D~d~~Esfytcsw~yd~~ 102 (385)
T KOG1034|consen 39 KPIFGVAFNSFLGCD-EPQVFATVGGNRVTIYECPGDGGIRLLQSYA---------------DEDHDESFYTCSWSYDSN 102 (385)
T ss_pred CccceeeeehhcCCC-CCceEEEeCCcEEEEEEECCccceeeeeecc---------------CCCCCcceEEEEEEecCC
Confidence 445555677778888 8999999998888776322 11 00000000 0001122334444433
Q ss_pred --CCEEEEEeecCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEEEEeCCCcee-e--
Q 000733 118 --ESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGGVNGPLED-V-- 192 (1324)
Q Consensus 118 --Es~LAVcaesGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl~e~lk~-V-- 192 (1324)
+-+||++.. -|.|+|.|+.+-+- ... -.++|..|++|+..|..+.+++.++.|-+|++||+....-+ +
T Consensus 103 ~~~p~la~~G~-~GvIrVid~~~~~~--~~~----~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfG 175 (385)
T KOG1034|consen 103 TGNPFLAAGGY-LGVIRVIDVVSGQC--SKN----YRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFG 175 (385)
T ss_pred CCCeeEEeecc-eeEEEEEecchhhh--ccc----eeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEec
Confidence 334565554 46999999875431 111 12466889999999999999999999999999999765321 2
Q ss_pred -----ecceeEEEeccCCCEEEEEecCc-eEEEcc---Cccc-------------ccccccCccccCCCC--CCCCceeE
Q 000733 193 -----MDNVDAVEWSVKGKFVAVAKKNV-LSILTS---KLKE-------------RLPISLSFKSWVGDC--DVNCSVKV 248 (1324)
Q Consensus 193 -----asgVScVcWSPKGKQLVVGlaDG-IsQyTP---Dgee-------------KkvIP~Pf~S~I~D~--d~d~sV~V 248 (1324)
.+.|.+|.||++|..|+.++.|- |..|.- ++.. ++.+|.|. -.+++. ..-....|
T Consensus 176 G~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~-~~fp~fst~diHrnyV 254 (385)
T KOG1034|consen 176 GVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPK-THFPDFSTTDIHRNYV 254 (385)
T ss_pred ccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccc-cccccccccccccchH
Confidence 37899999999999999999998 998842 2221 12244441 123332 12223368
Q ss_pred EEEEEecCCeEEEEE
Q 000733 249 DSIRWVRRDCIIIGC 263 (1324)
Q Consensus 249 ~SI~WLeNd~yLFg~ 263 (1324)
+.|+|+.+ |++..
T Consensus 255 DCvrw~gd--~ilSk 267 (385)
T KOG1034|consen 255 DCVRWFGD--FILSK 267 (385)
T ss_pred HHHHHHhh--heeec
Confidence 89999997 55544
No 94
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.05 E-value=0.0037 Score=70.03 Aligned_cols=110 Identities=20% Similarity=0.261 Sum_probs=82.2
Q ss_pred eEEEEec-CCCEEEEEeec------CCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEE
Q 000733 110 DILSLSN-DESTLAVSLYQ------SPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYR 182 (1324)
Q Consensus 110 shLAFSs-DEs~LAVcaes------Gg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~V 182 (1324)
..|-||+ =+..|||++.+ +|.|++.++.. .+.+.-+.++-.+ ..+-|++||+...+-++++.-||+|.+
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~--~~gi~e~~s~d~~--D~LfdV~Wse~~e~~~~~a~GDGSLrl 87 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTD--PKGIQECQSYDTE--DGLFDVAWSENHENQVIAASGDGSLRL 87 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCC--CCCeEEEEeeecc--cceeEeeecCCCcceEEEEecCceEEE
Confidence 4566666 34556666643 67899999862 2345555555555 469999999999999999999999999
Q ss_pred EEeCCCc------eeeecceeEEEeccC-CCEEEEEecCc-eEEEccCc
Q 000733 183 GGVNGPL------EDVMDNVDAVEWSVK-GKFVAVAKKNV-LSILTSKL 223 (1324)
Q Consensus 183 ldl~e~l------k~VasgVScVcWSPK-GKQLVVGlaDG-IsQyTPDg 223 (1324)
||+.... +.++..|-++.|.+. +.++++++=|| |+.|.|+.
T Consensus 88 ~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r 136 (311)
T KOG0277|consen 88 FDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNR 136 (311)
T ss_pred eccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCC
Confidence 9987542 234589999999987 55667788889 99998763
No 95
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.03 E-value=0.0049 Score=72.21 Aligned_cols=102 Identities=17% Similarity=0.204 Sum_probs=76.8
Q ss_pred eEEEEecCCCEEEEEeecCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEEEEeCCCc
Q 000733 110 DILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGGVNGPL 189 (1324)
Q Consensus 110 shLAFSsDEs~LAVcaesGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl~e~l 189 (1324)
-.|||+.||..|++..++ |.|+||+..++..--..+ .+...|+||.++|+.. .+|-++.| .++||++..+.
T Consensus 148 k~vaf~~~gs~latgg~d-g~lRv~~~Ps~~t~l~e~------~~~~eV~DL~FS~dgk-~lasig~d-~~~VW~~~~g~ 218 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTD-GTLRVWEWPSMLTILEEI------AHHAEVKDLDFSPDGK-FLASIGAD-SARVWSVNTGA 218 (398)
T ss_pred eEEEEcCCCCEeeecccc-ceEEEEecCcchhhhhhH------hhcCccccceeCCCCc-EEEEecCC-ceEEEEeccCc
Confidence 679999999999998766 699999988765321111 1236799999999654 67778877 78888775330
Q ss_pred -----e----------------------ee--------------------------------ecceeEEEeccCCCEEEE
Q 000733 190 -----E----------------------DV--------------------------------MDNVDAVEWSVKGKFVAV 210 (1324)
Q Consensus 190 -----k----------------------~V--------------------------------asgVScVcWSPKGKQLVV 210 (1324)
+ .+ ...++|++=|.+||.+|+
T Consensus 219 ~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~Al 298 (398)
T KOG0771|consen 219 ALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLAL 298 (398)
T ss_pred hhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEE
Confidence 0 00 137899999999999999
Q ss_pred EecCc-eEEEc
Q 000733 211 AKKNV-LSILT 220 (1324)
Q Consensus 211 GlaDG-IsQyT 220 (1324)
|+.+| |.+|.
T Consensus 299 GT~dGsVai~~ 309 (398)
T KOG0771|consen 299 GTMDGSVAIYD 309 (398)
T ss_pred eccCCcEEEEE
Confidence 99999 99994
No 96
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.03 E-value=0.018 Score=64.78 Aligned_cols=91 Identities=13% Similarity=0.144 Sum_probs=66.2
Q ss_pred CCcceEEEEecCCCCCeEEEEEeCCeEEEEEeCCCcee--e---ecceeEEEeccCCCEE-EEEecCc-eEEEccCcccc
Q 000733 154 GSTYVKDIRWRKKPENSFLALSNVGRLYRGGVNGPLED--V---MDNVDAVEWSVKGKFV-AVAKKNV-LSILTSKLKER 226 (1324)
Q Consensus 154 ~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl~e~lk~--V---asgVScVcWSPKGKQL-VVGlaDG-IsQyTPDgeeK 226 (1324)
+...|-+.+|+|..+++||-++.||.|.+||+....+. + ...+.|-.||.-...+ |.|..|+ |..| |+
T Consensus 146 h~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~w--Di--- 220 (311)
T KOG0277|consen 146 HNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGW--DI--- 220 (311)
T ss_pred CccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEE--eh---
Confidence 44688999999999999999999999999999754332 1 3589999999876654 6778888 9999 33
Q ss_pred cccccCccccCCCCCCCCceeEEEEEEe
Q 000733 227 LPISLSFKSWVGDCDVNCSVKVDSIRWV 254 (1324)
Q Consensus 227 kvIP~Pf~S~I~D~d~d~sV~V~SI~WL 254 (1324)
+.+..|. .++ ..+.+.|..|.|-
T Consensus 221 r~~r~pl-~eL----~gh~~AVRkvk~S 243 (311)
T KOG0277|consen 221 RNLRTPL-FEL----NGHGLAVRKVKFS 243 (311)
T ss_pred hhccccc-eee----cCCceEEEEEecC
Confidence 3444552 122 2344567777773
No 97
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=97.03 E-value=0.0043 Score=71.98 Aligned_cols=101 Identities=16% Similarity=0.192 Sum_probs=77.9
Q ss_pred CeeEEEEecCCCEEEEEeecCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEEEEeCC
Q 000733 108 NVDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGGVNG 187 (1324)
Q Consensus 108 ~VshLAFSsDEs~LAVcaesGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl~e 187 (1324)
.|+.++.+.|+..|+.+...+..|.+||++. |...|+....++ .+.-|+|+|+.. .|.+.+-|+...+|+...
T Consensus 197 pVtsmqwn~dgt~l~tAS~gsssi~iWdpdt---g~~~pL~~~glg---g~slLkwSPdgd-~lfaAt~davfrlw~e~q 269 (445)
T KOG2139|consen 197 PVTSMQWNEDGTILVTASFGSSSIMIWDPDT---GQKIPLIPKGLG---GFSLLKWSPDGD-VLFAATCDAVFRLWQENQ 269 (445)
T ss_pred eeeEEEEcCCCCEEeecccCcceEEEEcCCC---CCcccccccCCC---ceeeEEEcCCCC-EEEEecccceeeeehhcc
Confidence 5899999999999998887788999999986 445666533333 478899999766 566678899999998754
Q ss_pred Cc---e--eeecceeEEEeccCCCEEEEEecCc
Q 000733 188 PL---E--DVMDNVDAVEWSVKGKFVAVAKKNV 215 (1324)
Q Consensus 188 ~l---k--~VasgVScVcWSPKGKQLVVGlaDG 215 (1324)
.- + .-.+.|..+||||.|..|.......
T Consensus 270 ~wt~erw~lgsgrvqtacWspcGsfLLf~~sgs 302 (445)
T KOG2139|consen 270 SWTKERWILGSGRVQTACWSPCGSFLLFACSGS 302 (445)
T ss_pred cceecceeccCCceeeeeecCCCCEEEEEEcCC
Confidence 31 1 1236899999999999997665554
No 98
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=97.03 E-value=0.027 Score=70.65 Aligned_cols=94 Identities=11% Similarity=0.117 Sum_probs=70.5
Q ss_pred cCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEEEEeCCCceee------ecceeEEE
Q 000733 127 QSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGGVNGPLEDV------MDNVDAVE 200 (1324)
Q Consensus 127 sGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl~e~lk~V------asgVScVc 200 (1324)
++|.+.+|++++- .-+++++-- ...|..+...|... .+||-+.||++.++|++.. +.+ .+.|++++
T Consensus 180 ~~G~lql~Nvrt~-----K~v~~f~~~-~s~IT~ieqsPaLD-VVaiG~~~G~ViifNlK~d-kil~sFk~d~g~VtslS 251 (910)
T KOG1539|consen 180 SQGRLQLWNVRTG-----KVVYTFQEF-FSRITAIEQSPALD-VVAIGLENGTVIIFNLKFD-KILMSFKQDWGRVTSLS 251 (910)
T ss_pred cCCcEEEEEeccC-----cEEEEeccc-ccceeEeccCCcce-EEEEeccCceEEEEEcccC-cEEEEEEccccceeEEE
Confidence 3667888887752 223333222 26799999999775 7999999999999999854 222 27999999
Q ss_pred eccCCCEE-EEEecCc-eEEEccCcccccccc
Q 000733 201 WSVKGKFV-AVAKKNV-LSILTSKLKERLPIS 230 (1324)
Q Consensus 201 WSPKGKQL-VVGlaDG-IsQyTPDgeeKkvIP 230 (1324)
+..||..+ |+|..+| +.+| |++.++.|.
T Consensus 252 FrtDG~p~las~~~~G~m~~w--DLe~kkl~~ 281 (910)
T KOG1539|consen 252 FRTDGNPLLASGRSNGDMAFW--DLEKKKLIN 281 (910)
T ss_pred eccCCCeeEEeccCCceEEEE--EcCCCeeee
Confidence 99999965 7888999 9999 777776653
No 99
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=96.99 E-value=0.0024 Score=74.92 Aligned_cols=106 Identities=14% Similarity=0.247 Sum_probs=83.4
Q ss_pred CeeEEEEecCCCEEEEEeecCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEEEEeCC
Q 000733 108 NVDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGGVNG 187 (1324)
Q Consensus 108 ~VshLAFSsDEs~LAVcaesGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl~e 187 (1324)
.|.+|++|+|+++|++|... -.+.+|||.+ |+....+.-.+ +-.+...+|+|+.- .|++-+.|+.+.+||+.+
T Consensus 271 ~V~yi~wSPDdryLlaCg~~-e~~~lwDv~t---gd~~~~y~~~~--~~S~~sc~W~pDg~-~~V~Gs~dr~i~~wdlDg 343 (519)
T KOG0293|consen 271 PVSYIMWSPDDRYLLACGFD-EVLSLWDVDT---GDLRHLYPSGL--GFSVSSCAWCPDGF-RFVTGSPDRTIIMWDLDG 343 (519)
T ss_pred ceEEEEECCCCCeEEecCch-HheeeccCCc---chhhhhcccCc--CCCcceeEEccCCc-eeEecCCCCcEEEecCCc
Confidence 59999999999999999855 3699999986 43343333222 35688999999766 488889999999999987
Q ss_pred Cceeee-----cceeEEEeccCCCEEEEEecCc-eEEEc
Q 000733 188 PLEDVM-----DNVDAVEWSVKGKFVAVAKKNV-LSILT 220 (1324)
Q Consensus 188 ~lk~Va-----sgVScVcWSPKGKQLVVGlaDG-IsQyT 220 (1324)
+..--. ..|.|++-+++||.+++-+.|- |.+|.
T Consensus 344 n~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~ 382 (519)
T KOG0293|consen 344 NILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYN 382 (519)
T ss_pred chhhcccccccceeEEEEEcCCCcEEEEEecccceeeec
Confidence 642221 4588999999999999999998 99994
No 100
>PRK01742 tolB translocation protein TolB; Provisional
Probab=96.98 E-value=0.0083 Score=70.34 Aligned_cols=106 Identities=15% Similarity=0.113 Sum_probs=65.9
Q ss_pred eeEEEEecCCCEEEEEeecCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEE-eCCeEEEEEeC-
Q 000733 109 VDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALS-NVGRLYRGGVN- 186 (1324)
Q Consensus 109 VshLAFSsDEs~LAVcaesGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVS-sDGsL~Vldl~- 186 (1324)
...++||+|+..|+++...++.+.+|.+.. -.+... .+.- +...+.+..|+|+.. .+++++ .+|...||++.
T Consensus 250 ~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~-~~~~~~---~lt~-~~~~~~~~~wSpDG~-~i~f~s~~~g~~~I~~~~~ 323 (429)
T PRK01742 250 NGAPAFSPDGSRLAFASSKDGVLNIYVMGA-NGGTPS---QLTS-GAGNNTEPSWSPDGQ-SILFTSDRSGSPQVYRMSA 323 (429)
T ss_pred cCceeECCCCCEEEEEEecCCcEEEEEEEC-CCCCeE---eecc-CCCCcCCEEECCCCC-EEEEEECCCCCceEEEEEC
Confidence 456899999999988765455555554331 112222 2222 224577899999765 455444 46766666553
Q ss_pred -CC-ceeee-cceeEEEeccCCCEEEEEecCceEEEcc
Q 000733 187 -GP-LEDVM-DNVDAVEWSVKGKFVAVAKKNVLSILTS 221 (1324)
Q Consensus 187 -e~-lk~Va-sgVScVcWSPKGKQLVVGlaDGIsQyTP 221 (1324)
.. ...+. .+ .+.+|||+|++|+++..+++..|..
T Consensus 324 ~~~~~~~l~~~~-~~~~~SpDG~~ia~~~~~~i~~~Dl 360 (429)
T PRK01742 324 SGGGASLVGGRG-YSAQISADGKTLVMINGDNVVKQDL 360 (429)
T ss_pred CCCCeEEecCCC-CCccCCCCCCEEEEEcCCCEEEEEC
Confidence 22 23332 22 5788999999999988887666743
No 101
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=96.97 E-value=0.0068 Score=71.18 Aligned_cols=139 Identities=16% Similarity=0.202 Sum_probs=89.7
Q ss_pred CCCCCeeEEEEecCCCEEEEEeecCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEEE
Q 000733 104 FENENVDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRG 183 (1324)
Q Consensus 104 Lp~s~VshLAFSsDEs~LAVcaesGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vl 183 (1324)
++.+.+.-|.++ +...+.... +.-|+|||.++ ..+..++.+. ..|..|--+++..+ +..++.|.+|.+.
T Consensus 300 l~~S~cnDI~~~--~~~~~SgH~-DkkvRfwD~Rs-----~~~~~sv~~g--g~vtSl~ls~~g~~-lLsssRDdtl~vi 368 (459)
T KOG0288|consen 300 LPGSQCNDIVCS--ISDVISGHF-DKKVRFWDIRS-----ADKTRSVPLG--GRVTSLDLSMDGLE-LLSSSRDDTLKVI 368 (459)
T ss_pred cccccccceEec--ceeeeeccc-ccceEEEeccC-----CceeeEeecC--cceeeEeeccCCeE-EeeecCCCceeee
Confidence 443455555554 332222222 45799999886 3334444444 47888888887664 6667999999999
Q ss_pred EeCCC-ceee--------ecceeEEEeccCCCEEEEEecCc-eEEEccCc-ccccccccCccccCCCCCCCCceeEEEEE
Q 000733 184 GVNGP-LEDV--------MDNVDAVEWSVKGKFVAVAKKNV-LSILTSKL-KERLPISLSFKSWVGDCDVNCSVKVDSIR 252 (1324)
Q Consensus 184 dl~e~-lk~V--------asgVScVcWSPKGKQLVVGlaDG-IsQyTPDg-eeKkvIP~Pf~S~I~D~d~d~sV~V~SI~ 252 (1324)
|+... +... +..++.|++||+|.++++|+.|| |.+|.-.. +.-+.+..+. .+--|.++.
T Consensus 369 DlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~----------s~~aI~s~~ 438 (459)
T KOG0288|consen 369 DLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLST----------SNAAITSLS 438 (459)
T ss_pred ecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCC----------CCcceEEEE
Confidence 98643 2222 35788899999999999999999 99996532 2222222221 112588999
Q ss_pred EecCCeEEEEE
Q 000733 253 WVRRDCIIIGC 263 (1324)
Q Consensus 253 WLeNd~yLFg~ 263 (1324)
|-....+++.+
T Consensus 439 W~~sG~~Llsa 449 (459)
T KOG0288|consen 439 WNPSGSGLLSA 449 (459)
T ss_pred EcCCCchhhcc
Confidence 97766555443
No 102
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.95 E-value=0.0052 Score=68.62 Aligned_cols=115 Identities=14% Similarity=0.166 Sum_probs=84.9
Q ss_pred eecCCCCCeeEEEEec--CCCEEEEEeecCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCC-eEEEEEeC
Q 000733 101 DVPFENENVDILSLSN--DESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPEN-SFLALSNV 177 (1324)
Q Consensus 101 ~VPLp~s~VshLAFSs--DEs~LAVcaesGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~as-lLAVVSsD 177 (1324)
++-.+.+.|..|++.+ -|.+||.|..+ +.|-+|.-. +|.=+..+.+.. ++..|++++|-|..-. +||..++|
T Consensus 51 ~L~Gh~GPVwqv~wahPk~G~iLAScsYD-gkVIiWke~---~g~w~k~~e~~~-h~~SVNsV~wapheygl~LacasSD 125 (299)
T KOG1332|consen 51 ELTGHSGPVWKVAWAHPKFGTILASCSYD-GKVIIWKEE---NGRWTKAYEHAA-HSASVNSVAWAPHEYGLLLACASSD 125 (299)
T ss_pred EecCCCCCeeEEeecccccCcEeeEeecC-ceEEEEecC---CCchhhhhhhhh-hcccceeecccccccceEEEEeeCC
Confidence 3433334699999987 89999999977 477888633 233333333333 4578999999997544 67777899
Q ss_pred CeEEEEEeCCC-c---e----eeecceeEEEeccC---C-----------CEEEEEecCc-eEEEc
Q 000733 178 GRLYRGGVNGP-L---E----DVMDNVDAVEWSVK---G-----------KFVAVAKKNV-LSILT 220 (1324)
Q Consensus 178 GsL~Vldl~e~-l---k----~VasgVScVcWSPK---G-----------KQLVVGlaDG-IsQyT 220 (1324)
|++.|+++... . + -+.-||.+|||.|- | |.||.|..|- |.+|+
T Consensus 126 G~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~ 191 (299)
T KOG1332|consen 126 GKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWK 191 (299)
T ss_pred CcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeee
Confidence 99999998643 1 1 23479999999998 8 8899999998 99995
No 103
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=96.94 E-value=0.005 Score=70.09 Aligned_cols=114 Identities=11% Similarity=0.014 Sum_probs=86.7
Q ss_pred eecCCCCCeeEEEEecCCCEEEEEeecCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeE
Q 000733 101 DVPFENENVDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRL 180 (1324)
Q Consensus 101 ~VPLp~s~VshLAFSsDEs~LAVcaesGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL 180 (1324)
.+.++.+-|--|.|+.|++.|+.|.+. ..|++||+++-.. + +.++. +...|+.+.|+-....++.-.+.||+|
T Consensus 85 ~lkgHsgAVM~l~~~~d~s~i~S~gtD-k~v~~wD~~tG~~--~---rk~k~-h~~~vNs~~p~rrg~~lv~SgsdD~t~ 157 (338)
T KOG0265|consen 85 VLKGHSGAVMELHGMRDGSHILSCGTD-KTVRGWDAETGKR--I---RKHKG-HTSFVNSLDPSRRGPQLVCSGSDDGTL 157 (338)
T ss_pred eeccccceeEeeeeccCCCEEEEecCC-ceEEEEeccccee--e---ehhcc-ccceeeecCccccCCeEEEecCCCceE
Confidence 344555578889999999988877744 6899999987432 2 22233 336788888665555577777899999
Q ss_pred EEEEeCC--Cceee--ecceeEEEeccCCCEEEEEecCc-eEEEcc
Q 000733 181 YRGGVNG--PLEDV--MDNVDAVEWSVKGKFVAVAKKNV-LSILTS 221 (1324)
Q Consensus 181 ~Vldl~e--~lk~V--asgVScVcWSPKGKQLVVGlaDG-IsQyTP 221 (1324)
++||+.. .++.. ...+++|+|.-.+.|+..|+-|+ |.+|.|
T Consensus 158 kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~ 203 (338)
T KOG0265|consen 158 KLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDNDIKVWDL 203 (338)
T ss_pred EEEeecccchhhccccceeEEEEEecccccceeeccccCceeeecc
Confidence 9999963 34444 57899999999999999999999 999976
No 104
>PRK05137 tolB translocation protein TolB; Provisional
Probab=96.93 E-value=0.012 Score=68.83 Aligned_cols=132 Identities=16% Similarity=0.231 Sum_probs=80.7
Q ss_pred CeeEEEEecCCCEEEEEeecCC--eEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEe-CC--eEEE
Q 000733 108 NVDILSLSNDESTLAVSLYQSP--HIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSN-VG--RLYR 182 (1324)
Q Consensus 108 ~VshLAFSsDEs~LAVcaesGg--~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSs-DG--sL~V 182 (1324)
.+...+||+||..|+++...++ .|++||+.+ +....+ .-. ........|+|+.. .++++++ +| .|++
T Consensus 247 ~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~---~~~~~L---t~~-~~~~~~~~~spDG~-~i~f~s~~~g~~~Iy~ 318 (435)
T PRK05137 247 MTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRS---GTTTRL---TDS-PAIDTSPSYSPDGS-QIVFESDRSGSPQLYV 318 (435)
T ss_pred cccCcEECCCCCEEEEEEecCCCceEEEEECCC---CceEEc---cCC-CCccCceeEcCCCC-EEEEEECCCCCCeEEE
Confidence 3567899999998887664433 466667653 222222 112 23456789999754 4665553 33 6899
Q ss_pred EEeCCC-ceeee---cceeEEEeccCCCEEEEEecC-c---eEEEccCcccccccccCccccCCCCCCCCceeEEEEEEe
Q 000733 183 GGVNGP-LEDVM---DNVDAVEWSVKGKFVAVAKKN-V---LSILTSKLKERLPISLSFKSWVGDCDVNCSVKVDSIRWV 254 (1324)
Q Consensus 183 ldl~e~-lk~Va---sgVScVcWSPKGKQLVVGlaD-G---IsQyTPDgeeKkvIP~Pf~S~I~D~d~d~sV~V~SI~WL 254 (1324)
+|+..+ .+.+. ..+.+.+|||+|++||+...+ | |..|.+++...+.+.... .+.++.|-
T Consensus 319 ~d~~g~~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~~lt~~~-------------~~~~p~~s 385 (435)
T PRK05137 319 MNADGSNPRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGERILTSGF-------------LVEGPTWA 385 (435)
T ss_pred EECCCCCeEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceEeccCCC-------------CCCCCeEC
Confidence 998654 33332 356778999999999987654 3 667766554444333211 24567787
Q ss_pred cCCeEE
Q 000733 255 RRDCII 260 (1324)
Q Consensus 255 eNd~yL 260 (1324)
.+..++
T Consensus 386 pDG~~i 391 (435)
T PRK05137 386 PNGRVI 391 (435)
T ss_pred CCCCEE
Confidence 655444
No 105
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=96.91 E-value=0.0063 Score=72.20 Aligned_cols=116 Identities=16% Similarity=0.210 Sum_probs=83.1
Q ss_pred CeeEEEEecCCCEEEEEeecCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEEEEeCC
Q 000733 108 NVDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGGVNG 187 (1324)
Q Consensus 108 ~VshLAFSsDEs~LAVcaesGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl~e 187 (1324)
.+..-.+|+|+.+|+..... |.|++.... ..+-+.++++++ .|+++.|.-+. ..+.++..+|.++|||+..
T Consensus 305 ~~e~FeVShd~~fia~~G~~-G~I~lLhak-----T~eli~s~KieG--~v~~~~fsSds-k~l~~~~~~GeV~v~nl~~ 375 (514)
T KOG2055|consen 305 SMERFEVSHDSNFIAIAGNN-GHIHLLHAK-----TKELITSFKIEG--VVSDFTFSSDS-KELLASGGTGEVYVWNLRQ 375 (514)
T ss_pred hhheeEecCCCCeEEEcccC-ceEEeehhh-----hhhhhheeeecc--EEeeEEEecCC-cEEEEEcCCceEEEEecCC
Confidence 34566889999988877644 567766543 245566788874 79999999544 5788888899999999986
Q ss_pred Ccee---ee-c--ceeEEEeccCCCEEEEEecCc-eEEEccCcccccccccC
Q 000733 188 PLED---VM-D--NVDAVEWSVKGKFVAVAKKNV-LSILTSKLKERLPISLS 232 (1324)
Q Consensus 188 ~lk~---Va-s--gVScVcWSPKGKQLVVGlaDG-IsQyTPDgeeKkvIP~P 232 (1324)
..-. +- + .-+++|-|+.|.++|+|+..| |-+|.=+-.-...-|.|
T Consensus 376 ~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkP 427 (514)
T KOG2055|consen 376 NSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKP 427 (514)
T ss_pred cceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCc
Confidence 6211 11 2 346899999999999999999 99995322222233555
No 106
>PRK01742 tolB translocation protein TolB; Provisional
Probab=96.91 E-value=0.0043 Score=72.63 Aligned_cols=105 Identities=17% Similarity=0.172 Sum_probs=68.2
Q ss_pred CeeEEEEecCCCEEEEEeec--CCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEE-EeCCe--EEE
Q 000733 108 NVDILSLSNDESTLAVSLYQ--SPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLAL-SNVGR--LYR 182 (1324)
Q Consensus 108 ~VshLAFSsDEs~LAVcaes--Gg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVV-SsDGs--L~V 182 (1324)
.+..++||+|+..|+.+... ++.|.+||+.+ +....+.. .. .....++|+|+.. .++++ ..+|. |++
T Consensus 205 ~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~t---g~~~~l~~--~~--g~~~~~~wSPDG~-~La~~~~~~g~~~Iy~ 276 (429)
T PRK01742 205 PLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRS---GARKVVAS--FR--GHNGAPAFSPDGS-RLAFASSKDGVLNIYV 276 (429)
T ss_pred ccccceEcCCCCEEEEEEecCCCcEEEEEeCCC---CceEEEec--CC--CccCceeECCCCC-EEEEEEecCCcEEEEE
Confidence 57889999999999776533 35799999764 32222221 11 1234789999765 45554 46886 566
Q ss_pred EEeCCC-ceee---ecceeEEEeccCCCEEEEEec-Cc-eEEEc
Q 000733 183 GGVNGP-LEDV---MDNVDAVEWSVKGKFVAVAKK-NV-LSILT 220 (1324)
Q Consensus 183 ldl~e~-lk~V---asgVScVcWSPKGKQLVVGla-DG-IsQyT 220 (1324)
+|+..+ ...+ ...+.+++|||+|++|++... +| ..+|.
T Consensus 277 ~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~ 320 (429)
T PRK01742 277 MGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYR 320 (429)
T ss_pred EECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEE
Confidence 676533 2222 245789999999999987664 56 66663
No 107
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=96.90 E-value=0.0054 Score=69.92 Aligned_cols=99 Identities=15% Similarity=0.120 Sum_probs=71.2
Q ss_pred eEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEEEEeCCCce-------eeecceeEEEeccCCCEEEEEecCc-eEEE
Q 000733 148 FSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGGVNGPLE-------DVMDNVDAVEWSVKGKFVAVAKKNV-LSIL 219 (1324)
Q Consensus 148 ~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl~e~lk-------~VasgVScVcWSPKGKQLVVGlaDG-IsQy 219 (1324)
+++.-.++..|.+|+++|....++++-+=||++++|++..... .+...|.|+|||-+|..+++|..|+ +..|
T Consensus 20 ~ev~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~w 99 (347)
T KOG0647|consen 20 YEVPNPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLW 99 (347)
T ss_pred eecCCCcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEE
Confidence 3343355678999999996666676777799999999975311 2347899999999999999999999 9999
Q ss_pred ccCcccccccccCccccCCCCCCCCceeEEEEEEecCCe
Q 000733 220 TSKLKERLPISLSFKSWVGDCDVNCSVKVDSIRWVRRDC 258 (1324)
Q Consensus 220 TPDgeeKkvIP~Pf~S~I~D~d~d~sV~V~SI~WLeNd~ 258 (1324)
|++...+.... -.++ .|-.++|+..-.
T Consensus 100 --DL~S~Q~~~v~--------~Hd~--pvkt~~wv~~~~ 126 (347)
T KOG0647|consen 100 --DLASGQVSQVA--------AHDA--PVKTCHWVPGMN 126 (347)
T ss_pred --EccCCCeeeee--------eccc--ceeEEEEecCCC
Confidence 44433222111 1233 377788998743
No 108
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=96.89 E-value=0.02 Score=66.75 Aligned_cols=119 Identities=18% Similarity=0.188 Sum_probs=86.9
Q ss_pred eeeeecCCCCCeeEEEEecCCCEEEEEeecCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCC----------
Q 000733 98 SVVDVPFENENVDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKP---------- 167 (1324)
Q Consensus 98 ~vi~VPLp~s~VshLAFSsDEs~LAVcaesGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~---------- 167 (1324)
|+.+.+.+.+=|..++.+-||.++|.|... -.|++|-+.+-.-+ .-+. ++...|..++|-|..
T Consensus 227 cv~t~~~h~ewvr~v~v~~DGti~As~s~d-qtl~vW~~~t~~~k--~~lR----~hEh~vEci~wap~~~~~~i~~at~ 299 (406)
T KOG0295|consen 227 CVKTFPGHSEWVRMVRVNQDGTIIASCSND-QTLRVWVVATKQCK--AELR----EHEHPVECIAWAPESSYPSISEATG 299 (406)
T ss_pred eEEeccCchHhEEEEEecCCeeEEEecCCC-ceEEEEEeccchhh--hhhh----ccccceEEEEecccccCcchhhccC
Confidence 444555555578888999999999888844 68999988764111 1111 123567778887742
Q ss_pred ----CCeEEEEEeCCeEEEEEeCCCc---eee--ecceeEEEeccCCCEEEEEecCc-eEEEccCccc
Q 000733 168 ----ENSFLALSNVGRLYRGGVNGPL---EDV--MDNVDAVEWSVKGKFVAVAKKNV-LSILTSKLKE 225 (1324)
Q Consensus 168 ----aslLAVVSsDGsL~Vldl~e~l---k~V--asgVScVcWSPKGKQLVVGlaDG-IsQyTPDgee 225 (1324)
...+...+.|+++.+||+..+. +++ ...|..+++||.||+|+....|+ |.+| |++.
T Consensus 300 ~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvw--dl~~ 365 (406)
T KOG0295|consen 300 STNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVW--DLKN 365 (406)
T ss_pred CCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEE--Eecc
Confidence 1377888999999999998662 222 37999999999999999999999 9999 4443
No 109
>PRK01029 tolB translocation protein TolB; Provisional
Probab=96.87 E-value=0.024 Score=67.05 Aligned_cols=136 Identities=13% Similarity=0.119 Sum_probs=76.7
Q ss_pred eeEEEEecCCCEEEEEeecCC--eEEE--EEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEE-eCC--eEE
Q 000733 109 VDILSLSNDESTLAVSLYQSP--HIHF--FSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALS-NVG--RLY 181 (1324)
Q Consensus 109 VshLAFSsDEs~LAVcaesGg--~L~V--YDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVS-sDG--sL~ 181 (1324)
....+||+||..||.+....| .+.+ |++..-..+... .+.-..........|+|+.. .++.++ .+| .|+
T Consensus 233 ~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~---~lt~~~~~~~~~p~wSPDG~-~Laf~s~~~g~~~ly 308 (428)
T PRK01029 233 QLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPR---RLLNEAFGTQGNPSFSPDGT-RLVFVSNKDGRPRIY 308 (428)
T ss_pred ccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcce---EeecCCCCCcCCeEECCCCC-EEEEEECCCCCceEE
Confidence 445789999999988764322 3333 454431111111 12211112345789999765 455555 356 477
Q ss_pred EEEeCC-C--ceee---ecceeEEEeccCCCEEEEEecC-c---eEEEccCcccccccccCccccCCCCCCCCceeEEEE
Q 000733 182 RGGVNG-P--LEDV---MDNVDAVEWSVKGKFVAVAKKN-V---LSILTSKLKERLPISLSFKSWVGDCDVNCSVKVDSI 251 (1324)
Q Consensus 182 Vldl~e-~--lk~V---asgVScVcWSPKGKQLVVGlaD-G---IsQyTPDgeeKkvIP~Pf~S~I~D~d~d~sV~V~SI 251 (1324)
++++.. + .+.+ ...+.+.+|||+|+.||+...+ | |.+|.++....+.+... ...+.+.
T Consensus 309 ~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~------------~~~~~~p 376 (428)
T PRK01029 309 IMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTS------------PENKESP 376 (428)
T ss_pred EEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCC------------CCCccce
Confidence 777642 1 2323 2457789999999999876554 3 78886654433333211 1134567
Q ss_pred EEecCCeEE
Q 000733 252 RWVRRDCII 260 (1324)
Q Consensus 252 ~WLeNd~yL 260 (1324)
.|-.+..++
T Consensus 377 ~wSpDG~~L 385 (428)
T PRK01029 377 SWAIDSLHL 385 (428)
T ss_pred EECCCCCEE
Confidence 897665444
No 110
>PRK04922 tolB translocation protein TolB; Provisional
Probab=96.87 E-value=0.016 Score=67.87 Aligned_cols=107 Identities=21% Similarity=0.282 Sum_probs=67.3
Q ss_pred eeEEEEecCCCEEEEEeec--CCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEe-CCe--EEEE
Q 000733 109 VDILSLSNDESTLAVSLYQ--SPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSN-VGR--LYRG 183 (1324)
Q Consensus 109 VshLAFSsDEs~LAVcaes--Gg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSs-DGs--L~Vl 183 (1324)
...++||+|+..|++.... ...|++|++.+ +...++. ........+.|+|+.. .++++++ +|. ||++
T Consensus 250 ~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~---g~~~~lt----~~~~~~~~~~~spDG~-~l~f~sd~~g~~~iy~~ 321 (433)
T PRK04922 250 NGAPSFSPDGRRLALTLSRDGNPEIYVMDLGS---RQLTRLT----NHFGIDTEPTWAPDGK-SIYFTSDRGGRPQIYRV 321 (433)
T ss_pred ccCceECCCCCEEEEEEeCCCCceEEEEECCC---CCeEECc----cCCCCccceEECCCCC-EEEEEECCCCCceEEEE
Confidence 4578999999988765533 23688888764 3333222 1112345789999754 4555553 444 8888
Q ss_pred EeCCC-ceeee---cceeEEEeccCCCEEEEEecC-c---eEEEccCc
Q 000733 184 GVNGP-LEDVM---DNVDAVEWSVKGKFVAVAKKN-V---LSILTSKL 223 (1324)
Q Consensus 184 dl~e~-lk~Va---sgVScVcWSPKGKQLVVGlaD-G---IsQyTPDg 223 (1324)
++..+ .+.+. ....+++|||+|++|++...+ | |..|..+.
T Consensus 322 dl~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~ 369 (433)
T PRK04922 322 AASGGSAERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLST 369 (433)
T ss_pred ECCCCCeEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCC
Confidence 88543 33332 234578999999999987654 3 66776543
No 111
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=96.81 E-value=0.0066 Score=70.74 Aligned_cols=108 Identities=17% Similarity=0.206 Sum_probs=77.4
Q ss_pred CeeEEEEecCCCEEEEEeecCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEEEEeCC
Q 000733 108 NVDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGGVNG 187 (1324)
Q Consensus 108 ~VshLAFSsDEs~LAVcaesGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl~e 187 (1324)
-|.-|..|+.|..+.+...-++.|++||+++-- ..+.-.. -.++.-|+-+-||-..+ ++|.-..||+|.|||+..
T Consensus 259 SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~---~~~~~~~-kAh~sDVNVISWnr~~~-lLasG~DdGt~~iwDLR~ 333 (440)
T KOG0302|consen 259 SVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGP---KKAAVST-KAHNSDVNVISWNRREP-LLASGGDDGTLSIWDLRQ 333 (440)
T ss_pred chhhhccCCccCceEEeeecCceEEEEEecCCC---ccceeEe-eccCCceeeEEccCCcc-eeeecCCCceEEEEEhhh
Confidence 466778888666554444346799999999742 2222211 22346899999999877 899999999999999952
Q ss_pred ---C-----ceeeecceeEEEeccCCCE-EEEEecCc-eEEEc
Q 000733 188 ---P-----LEDVMDNVDAVEWSVKGKF-VAVAKKNV-LSILT 220 (1324)
Q Consensus 188 ---~-----lk~VasgVScVcWSPKGKQ-LVVGlaDG-IsQyT 220 (1324)
+ ++.+...++|+.|+|--.. |++++.|. |++|.
T Consensus 334 ~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWD 376 (440)
T KOG0302|consen 334 FKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWD 376 (440)
T ss_pred ccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEE
Confidence 1 2344689999999998664 45566666 99994
No 112
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=96.79 E-value=0.017 Score=69.37 Aligned_cols=136 Identities=14% Similarity=0.204 Sum_probs=95.7
Q ss_pred CeeEEEEecCCCEEEEEeecCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEEEEeCC
Q 000733 108 NVDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGGVNG 187 (1324)
Q Consensus 108 ~VshLAFSsDEs~LAVcaesGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl~e 187 (1324)
...-+|..|+...|+.|. +++.+++|+ +.++.++..++. .+.++.+-|.. .+|+-+..|..+|+|...
T Consensus 370 elwgla~hps~~q~~T~g-qdk~v~lW~-------~~k~~wt~~~~d--~~~~~~fhpsg--~va~Gt~~G~w~V~d~e~ 437 (626)
T KOG2106|consen 370 ELWGLATHPSKNQLLTCG-QDKHVRLWN-------DHKLEWTKIIED--PAECADFHPSG--VVAVGTATGRWFVLDTET 437 (626)
T ss_pred ceeeEEcCCChhheeecc-CcceEEEcc-------CCceeEEEEecC--ceeEeeccCcc--eEEEeeccceEEEEeccc
Confidence 455667778777777777 557999998 356666666653 56777787744 799999999999999976
Q ss_pred Cc--eee--ecceeEEEeccCCCEEEEEecCc-eEEEccCcccccccccCccccCCCCCCCCceeEEEEEEecCCeEEEE
Q 000733 188 PL--EDV--MDNVDAVEWSVKGKFVAVAKKNV-LSILTSKLKERLPISLSFKSWVGDCDVNCSVKVDSIRWVRRDCIIIG 262 (1324)
Q Consensus 188 ~l--k~V--asgVScVcWSPKGKQLVVGlaDG-IsQyTPDgeeKkvIP~Pf~S~I~D~d~d~sV~V~SI~WLeNd~yLFg 262 (1324)
.. +.. .+..+||.+||+|..||+|+.|+ |++|.-+-...+ ..+- +-+.. -.+..+-|-.+..|+++
T Consensus 438 ~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~-y~r~-----~k~~g---s~ithLDwS~Ds~~~~~ 508 (626)
T KOG2106|consen 438 QDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRK-YSRV-----GKCSG---SPITHLDWSSDSQFLVS 508 (626)
T ss_pred ceeEEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcE-EEEe-----eeecC---ceeEEeeecCCCceEEe
Confidence 42 111 37899999999999999999999 999975422111 1110 00111 25788899877767766
Q ss_pred EE
Q 000733 263 CF 264 (1324)
Q Consensus 263 ~v 264 (1324)
..
T Consensus 509 ~S 510 (626)
T KOG2106|consen 509 NS 510 (626)
T ss_pred cc
Confidence 43
No 113
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=96.77 E-value=0.029 Score=66.10 Aligned_cols=138 Identities=14% Similarity=0.136 Sum_probs=99.4
Q ss_pred CCeeEEEEecCCCEEEEEeecCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEEEEeC
Q 000733 107 ENVDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGGVN 186 (1324)
Q Consensus 107 s~VshLAFSsDEs~LAVcaesGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl~ 186 (1324)
+.|..||||+.++..+.|... +.|.+||..--.+ -.-+ -+++..|+++.|-|... ++|.-+.|..+.+||-.
T Consensus 181 eaIRdlafSpnDskF~t~SdD-g~ikiWdf~~~ke--e~vL----~GHgwdVksvdWHP~kg-LiasgskDnlVKlWDpr 252 (464)
T KOG0284|consen 181 EAIRDLAFSPNDSKFLTCSDD-GTIKIWDFRMPKE--ERVL----RGHGWDVKSVDWHPTKG-LIASGSKDNLVKLWDPR 252 (464)
T ss_pred hhhheeccCCCCceeEEecCC-CeEEEEeccCCch--hhee----ccCCCCcceeccCCccc-eeEEccCCceeEeecCC
Confidence 468899999988888888754 7999999664322 1111 25678999999999665 78888999999999987
Q ss_pred CCc-----eeeecceeEEEeccCCCEEEEEecCc-eEEEccC-cccccccccCccccCCCCCCCCceeEEEEEEecCCeE
Q 000733 187 GPL-----EDVMDNVDAVEWSVKGKFVAVAKKNV-LSILTSK-LKERLPISLSFKSWVGDCDVNCSVKVDSIRWVRRDCI 259 (1324)
Q Consensus 187 e~l-----k~VasgVScVcWSPKGKQLVVGlaDG-IsQyTPD-geeKkvIP~Pf~S~I~D~d~d~sV~V~SI~WLeNd~y 259 (1324)
.+. -.+..-|..+-|+|.|..|++|++|- +..|..- +++..+... + .-.|.++.|.-=+.=
T Consensus 253 Sg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~-H-----------kkdv~~~~WhP~~~~ 320 (464)
T KOG0284|consen 253 SGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRG-H-----------KKDVTSLTWHPLNES 320 (464)
T ss_pred CcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhc-c-----------hhhheeecccccccc
Confidence 652 22358899999999999999999999 9999532 333333221 1 125889999633223
Q ss_pred EEEEE
Q 000733 260 IIGCF 264 (1324)
Q Consensus 260 LFg~v 264 (1324)
+|+..
T Consensus 321 lftsg 325 (464)
T KOG0284|consen 321 LFTSG 325 (464)
T ss_pred ceeec
Confidence 45544
No 114
>PRK02889 tolB translocation protein TolB; Provisional
Probab=96.77 E-value=0.0097 Score=69.80 Aligned_cols=118 Identities=13% Similarity=0.209 Sum_probs=76.2
Q ss_pred eeEEEEecCCCEEEEEeecCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCC---eEEEEEe
Q 000733 109 VDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVG---RLYRGGV 185 (1324)
Q Consensus 109 VshLAFSsDEs~LAVcaesGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDG---sL~Vldl 185 (1324)
....+|++||..|+.+...++...+|.+.. -.+.... +...+ .......|+|+.. .+|.++.++ .|+++|+
T Consensus 286 ~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~-~~g~~~~---lt~~g-~~~~~~~~SpDG~-~Ia~~s~~~g~~~I~v~d~ 359 (427)
T PRK02889 286 DTEPFFSPDGRSIYFTSDRGGAPQIYRMPA-SGGAAQR---VTFTG-SYNTSPRISPDGK-LLAYISRVGGAFKLYVQDL 359 (427)
T ss_pred CcCeEEcCCCCEEEEEecCCCCcEEEEEEC-CCCceEE---EecCC-CCcCceEECCCCC-EEEEEEccCCcEEEEEEEC
Confidence 456789999999887665556667776542 1122222 22222 3344678999655 577666655 5999998
Q ss_pred CCC-ceeee--cceeEEEeccCCCEEEEEecCc----eEEEccCcccccccccC
Q 000733 186 NGP-LEDVM--DNVDAVEWSVKGKFVAVAKKNV----LSILTSKLKERLPISLS 232 (1324)
Q Consensus 186 ~e~-lk~Va--sgVScVcWSPKGKQLVVGlaDG----IsQyTPDgeeKkvIP~P 232 (1324)
..+ .+.+. ......+|||+|++|++...++ +..+..++...+.++.|
T Consensus 360 ~~g~~~~lt~~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~g~~~~~l~~~ 413 (427)
T PRK02889 360 ATGQVTALTDTTRDESPSFAPNGRYILYATQQGGRSVLAAVSSDGRIKQRLSVQ 413 (427)
T ss_pred CCCCeEEccCCCCccCceECCCCCEEEEEEecCCCEEEEEEECCCCceEEeecC
Confidence 644 33332 2456889999999999988765 55555667666666544
No 115
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=96.76 E-value=0.037 Score=67.65 Aligned_cols=140 Identities=14% Similarity=0.179 Sum_probs=92.7
Q ss_pred CCCeeEEEEecCCCEEEEEeecCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEEEEe
Q 000733 106 NENVDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGGV 185 (1324)
Q Consensus 106 ~s~VshLAFSsDEs~LAVcaesGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl 185 (1324)
.+.|..|+..+-|..||.... +|.|++|++.+.- -+..+.+. ..|++++|||.....+++|...++++|.+-
T Consensus 400 tg~Vr~iSvdp~G~wlasGsd-DGtvriWEi~TgR-----cvr~~~~d--~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp 471 (733)
T KOG0650|consen 400 TGLVRSISVDPSGEWLASGSD-DGTVRIWEIATGR-----CVRTVQFD--SEIRSVAWNPLSDLCVLAVAVGECVLIVNP 471 (733)
T ss_pred CCeEEEEEecCCcceeeecCC-CCcEEEEEeecce-----EEEEEeec--ceeEEEEecCCCCceeEEEEecCceEEeCc
Confidence 457889999999998887764 4789999998743 34455555 479999999998887888888888877753
Q ss_pred C--CCce--------------------ee--------------------ecceeEEEeccCCCEEEEEecCc----eEEE
Q 000733 186 N--GPLE--------------------DV--------------------MDNVDAVEWSVKGKFVAVAKKNV----LSIL 219 (1324)
Q Consensus 186 ~--e~lk--------------------~V--------------------asgVScVcWSPKGKQLVVGlaDG----IsQy 219 (1324)
. +.+. ++ ...|..+.|..||.+||+-..+| |.++
T Consensus 472 ~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliH 551 (733)
T KOG0650|consen 472 IFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIH 551 (733)
T ss_pred cccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEE
Confidence 2 1100 00 13566799999999999988875 4444
Q ss_pred ccCcccccccccCccccCCCCCCCCceeEEEEEEecCCeEEEEEE
Q 000733 220 TSKLKERLPISLSFKSWVGDCDVNCSVKVDSIRWVRRDCIIIGCF 264 (1324)
Q Consensus 220 TPDgeeKkvIP~Pf~S~I~D~d~d~sV~V~SI~WLeNd~yLFg~v 264 (1324)
++.. +...+||+ -..+ .|..+...-..-|+|.+.
T Consensus 552 --QLSK-~~sQ~PF~------kskG--~vq~v~FHPs~p~lfVaT 585 (733)
T KOG0650|consen 552 --QLSK-RKSQSPFR------KSKG--LVQRVKFHPSKPYLFVAT 585 (733)
T ss_pred --eccc-ccccCchh------hcCC--ceeEEEecCCCceEEEEe
Confidence 4433 33347762 1122 355555554444555544
No 116
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=96.74 E-value=0.0078 Score=68.98 Aligned_cols=81 Identities=10% Similarity=0.060 Sum_probs=66.4
Q ss_pred eecCCCCCeeEEEEecCCCEEEEEeecCCeEEEEEcccccCCCCcceeEEec--CCCcceEEEEecCCCCCeEEEEEeCC
Q 000733 101 DVPFENENVDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSL--NGSTYVKDIRWRKKPENSFLALSNVG 178 (1324)
Q Consensus 101 ~VPLp~s~VshLAFSsDEs~LAVcaesGg~L~VYDV~SLlng~t~P~~sisL--n~st~VrdLaWNP~~aslLAVVSsDG 178 (1324)
.++.+++.|.+|+++.||+.||.+.+.|..|++||+.+ ..++.+.+= ++ +.|.++++||+.. .+||.++.|
T Consensus 176 ~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~-----g~~l~E~RRG~d~-A~iy~iaFSp~~s-~LavsSdKg 248 (346)
T KOG2111|consen 176 IINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTED-----GTLLQELRRGVDR-ADIYCIAFSPNSS-WLAVSSDKG 248 (346)
T ss_pred EEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCC-----CcEeeeeecCCch-heEEEEEeCCCcc-EEEEEcCCC
Confidence 45566778999999999999999999999999999875 333444433 33 7899999999765 899999999
Q ss_pred eEEEEEeCCC
Q 000733 179 RLYRGGVNGP 188 (1324)
Q Consensus 179 sL~Vldl~e~ 188 (1324)
+|.|+.+.+.
T Consensus 249 TlHiF~l~~~ 258 (346)
T KOG2111|consen 249 TLHIFSLRDT 258 (346)
T ss_pred eEEEEEeecC
Confidence 9999999764
No 117
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=96.73 E-value=0.02 Score=74.06 Aligned_cols=138 Identities=14% Similarity=0.185 Sum_probs=89.7
Q ss_pred eeEEEEecCCCEEEEEeecCCeE-EEEEcccccCC-CCcceeEEec----CCCcceEEEEecCCCCCeEEEEEeCCeEEE
Q 000733 109 VDILSLSNDESTLAVSLYQSPHI-HFFSVHSLLNK-EIKPSFSCSL----NGSTYVKDIRWRKKPENSFLALSNVGRLYR 182 (1324)
Q Consensus 109 VshLAFSsDEs~LAVcaesGg~L-~VYDV~SLlng-~t~P~~sisL----n~st~VrdLaWNP~~aslLAVVSsDGsL~V 182 (1324)
+...+|..+...+.++... ..+ ...++.....+ +.+.+.++.. .++..|..|.+-+... .+.+++.+|.+.+
T Consensus 24 ~~~~~~d~~sd~i~~~~~~-~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~-~l~~~~~~Gdi~~ 101 (928)
T PF04762_consen 24 ITATAFDSDSDSIYFVLGP-NEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSE-SLCIALASGDIIL 101 (928)
T ss_pred cceEEEecCCCeEEEEECC-CCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCC-cEEEEECCceEEE
Confidence 4555555555444333311 122 34555554433 3455555542 2347899999999765 5888899999999
Q ss_pred E----EeCCC-ceee---ecceeEEEeccCCCEEEEEecCc-eEEEccCcccccccccCccccCCCCCCCCceeEEEEEE
Q 000733 183 G----GVNGP-LEDV---MDNVDAVEWSVKGKFVAVAKKNV-LSILTSKLKERLPISLSFKSWVGDCDVNCSVKVDSIRW 253 (1324)
Q Consensus 183 l----dl~e~-lk~V---asgVScVcWSPKGKQLVVGlaDG-IsQyTPDgeeKkvIP~Pf~S~I~D~d~d~sV~V~SI~W 253 (1324)
+ +.... ...+ ..|+.|++|||++..||+.+++| |..|+-+++.-.+++.-. .+ -+.-+-.+|-|
T Consensus 102 ~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~------~~-~~~~~~VsVGW 174 (928)
T PF04762_consen 102 VREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDS------DD-FGESKHVSVGW 174 (928)
T ss_pred EEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCc------cc-cCCCceeeecc
Confidence 9 44433 2333 47999999999999999999999 999998888766665532 11 11224567788
Q ss_pred ec
Q 000733 254 VR 255 (1324)
Q Consensus 254 Le 255 (1324)
=.
T Consensus 175 Gk 176 (928)
T PF04762_consen 175 GK 176 (928)
T ss_pred Cc
Confidence 63
No 118
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=96.68 E-value=0.024 Score=63.50 Aligned_cols=155 Identities=13% Similarity=0.116 Sum_probs=98.8
Q ss_pred EeeCCcceEEEEEcCCc-eEEEEehHHHHHHhhcccCCcccccccceeeeecCCCCCeeEEEEecCCCEEEEEeecCCeE
Q 000733 53 AVSQLSHQLIFAAHSSG-FCVARTNDVIDAAKEMKENGTRCCVQELSVVDVPFENENVDILSLSNDESTLAVSLYQSPHI 131 (1324)
Q Consensus 53 AVSN~K~GLvfAAgpdG-LvVarTsDLr~a~ksa~en~tv~~~~dl~vi~VPLp~s~VshLAFSsDEs~LAVcaesGg~L 131 (1324)
|||. ..-++|||+..| +.+.+++++......+..+.. +++-..++..+..|+|. +..|.+|. +|.|
T Consensus 17 a~sp-~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~--------iv~eqahdgpiy~~~f~--d~~Lls~g--dG~V 83 (325)
T KOG0649|consen 17 AISP-SKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLK--------IVPEQAHDGPIYYLAFH--DDFLLSGG--DGLV 83 (325)
T ss_pred hhCC-cceEEEEecCCCeEEEEEehhhhccccCCCCCcc--------eeeccccCCCeeeeeee--hhheeecc--CceE
Confidence 4455 555577776666 677888888764332222211 11112224469999998 44577788 7899
Q ss_pred EEEEcccccC-CCCcceeEEecC------CCcceEEEEecCCCCCeEEEEEeCCeEEEEEeCCC-ceee----ecceeEE
Q 000733 132 HFFSVHSLLN-KEIKPSFSCSLN------GSTYVKDIRWRKKPENSFLALSNVGRLYRGGVNGP-LEDV----MDNVDAV 199 (1324)
Q Consensus 132 ~VYDV~SLln-g~t~P~~sisLn------~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl~e~-lk~V----asgVScV 199 (1324)
+=|.-+.+.. ...+++.+..+. +=-.|+++.--|..+ .+....-||.+|.+|+.++ ++.. .+-|-||
T Consensus 84 ~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~en-Si~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~v 162 (325)
T KOG0649|consen 84 YGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSEN-SILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSV 162 (325)
T ss_pred EEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCC-cEEEecCCeEEEEEEecCCEEEEEEcCCcceeeee
Confidence 9998887765 334444332220 002477777777555 4555568999999999865 3332 3678888
Q ss_pred EeccCCCEEEEEecCc-eEEEcc
Q 000733 200 EWSVKGKFVAVAKKNV-LSILTS 221 (1324)
Q Consensus 200 cWSPKGKQLVVGlaDG-IsQyTP 221 (1324)
.--...-||..|..|| +.+|.-
T Consensus 163 v~R~~~~qilsG~EDGtvRvWd~ 185 (325)
T KOG0649|consen 163 VGRNANGQILSGAEDGTVRVWDT 185 (325)
T ss_pred eecccCcceeecCCCccEEEEec
Confidence 8645556899999999 999953
No 119
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=96.66 E-value=0.017 Score=65.95 Aligned_cols=100 Identities=19% Similarity=0.221 Sum_probs=64.2
Q ss_pred CeeEEEEecCCCEEEEEeecC--CeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCC--eEEEE
Q 000733 108 NVDILSLSNDESTLAVSLYQS--PHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVG--RLYRG 183 (1324)
Q Consensus 108 ~VshLAFSsDEs~LAVcaesG--g~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDG--sL~Vl 183 (1324)
.+...+||+|+..|+.+...+ ..|++|++.+ +....+.. .. ..+..+.|+|+...++.....+| .|+++
T Consensus 191 ~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~---g~~~~~~~--~~--~~~~~~~~spDg~~l~~~~~~~~~~~i~~~ 263 (417)
T TIGR02800 191 PILSPAWSPDGQKLAYVSFESGKPEIYVQDLAT---GQREKVAS--FP--GMNGAPAFSPDGSKLAVSLSKDGNPDIYVM 263 (417)
T ss_pred ceecccCCCCCCEEEEEEcCCCCcEEEEEECCC---CCEEEeec--CC--CCccceEECCCCCEEEEEECCCCCccEEEE
Confidence 366778999999998776443 5789998764 22222211 11 24567899997654333344444 58999
Q ss_pred EeCCC-ceeee---cceeEEEeccCCCEEEEEecC
Q 000733 184 GVNGP-LEDVM---DNVDAVEWSVKGKFVAVAKKN 214 (1324)
Q Consensus 184 dl~e~-lk~Va---sgVScVcWSPKGKQLVVGlaD 214 (1324)
++..+ .+.+. ..+.+.+|+|+|++|++....
T Consensus 264 d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~ 298 (417)
T TIGR02800 264 DLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDR 298 (417)
T ss_pred ECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECC
Confidence 98754 22222 234578999999999877654
No 120
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=96.65 E-value=0.015 Score=66.72 Aligned_cols=109 Identities=10% Similarity=0.122 Sum_probs=84.0
Q ss_pred CCCeeEEEEecCCCEEEEEeecCCeEEEEEcccccCCCCcceeEEec-CCCcceEEEEecCCCCCeEEEEEeCCeEEEEE
Q 000733 106 NENVDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSL-NGSTYVKDIRWRKKPENSFLALSNVGRLYRGG 184 (1324)
Q Consensus 106 ~s~VshLAFSsDEs~LAVcaesGg~L~VYDV~SLlng~t~P~~sisL-n~st~VrdLaWNP~~aslLAVVSsDGsL~Vld 184 (1324)
.+.|.+..|+.||..++.|. ++|.|.||+..+ ++-+.+++. +.+..|+.+..-|-.++-|+||....+++|.+
T Consensus 348 sSyvn~a~ft~dG~~iisaS-sDgtvkvW~~Kt-----teC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn 421 (508)
T KOG0275|consen 348 SSYVNEATFTDDGHHIISAS-SDGTVKVWHGKT-----TECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMN 421 (508)
T ss_pred cccccceEEcCCCCeEEEec-CCccEEEecCcc-----hhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEe
Confidence 56899999999999987776 457899998664 222223332 23478899999998888999999999999999
Q ss_pred eCCCce-ee------ecceeEEEeccCCCEEEEEecCc-eEEEc
Q 000733 185 VNGPLE-DV------MDNVDAVEWSVKGKFVAVAKKNV-LSILT 220 (1324)
Q Consensus 185 l~e~lk-~V------asgVScVcWSPKGKQLVVGlaDG-IsQyT 220 (1324)
+.+.+. .. .+...|.|.||||..|.+...|| +.-|.
T Consensus 422 ~qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~ 465 (508)
T KOG0275|consen 422 MQGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFS 465 (508)
T ss_pred ccceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEE
Confidence 976532 11 25677899999999999999999 66553
No 121
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=96.63 E-value=0.026 Score=67.96 Aligned_cols=110 Identities=9% Similarity=0.095 Sum_probs=75.7
Q ss_pred CeeEEEEecCCCEEEEEeecCCeEEEEEcccccCCCCcceeEEecCCC--cceEEEEecCCCCCeEEEEEeCCeEEEEEe
Q 000733 108 NVDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGS--TYVKDIRWRKKPENSFLALSNVGRLYRGGV 185 (1324)
Q Consensus 108 ~VshLAFSsDEs~LAVcaesGg~L~VYDV~SLlng~t~P~~sisLn~s--t~VrdLaWNP~~aslLAVVSsDGsL~Vldl 185 (1324)
.+++..+.++..--......+|.|++|+|.....+ ..++..+..++ ..+..-+|||+.. .+|.--.||++.+|+.
T Consensus 270 ~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q--~qVik~k~~~g~Rv~~tsC~~nrdg~-~iAagc~DGSIQ~W~~ 346 (641)
T KOG0772|consen 270 ELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQ--LQVIKTKPAGGKRVPVTSCAWNRDGK-LIAAGCLDGSIQIWDK 346 (641)
T ss_pred eeeccccccCcccceEEecCCCcEEEEecCCchhh--eeEEeeccCCCcccCceeeecCCCcc-hhhhcccCCceeeeec
Confidence 35555666654433222223789999999976532 12222222222 5677889999776 5888888999999998
Q ss_pred CCCc---eee-------ecceeEEEeccCCCEEEEEecCc-eEEEc
Q 000733 186 NGPL---EDV-------MDNVDAVEWSVKGKFVAVAKKNV-LSILT 220 (1324)
Q Consensus 186 ~e~l---k~V-------asgVScVcWSPKGKQLVVGlaDG-IsQyT 220 (1324)
.... .++ .+.++||.+|++|++|+.=+.|+ +..|.
T Consensus 347 ~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWD 392 (641)
T KOG0772|consen 347 GSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWD 392 (641)
T ss_pred CCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeee
Confidence 6431 111 25899999999999999999998 99994
No 122
>PRK02889 tolB translocation protein TolB; Provisional
Probab=96.62 E-value=0.04 Score=64.81 Aligned_cols=109 Identities=19% Similarity=0.194 Sum_probs=64.4
Q ss_pred CeeEEEEecCCCEEEEEeecCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEe-CCe--EEEEE
Q 000733 108 NVDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSN-VGR--LYRGG 184 (1324)
Q Consensus 108 ~VshLAFSsDEs~LAVcaesGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSs-DGs--L~Vld 184 (1324)
.+...+||+|+..|+.....++...+|.+.. ..+....+ . .+........|+|+.. .++++++ +|. |++++
T Consensus 241 ~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~-~~~~~~~l---t-~~~~~~~~~~wSpDG~-~l~f~s~~~g~~~Iy~~~ 314 (427)
T PRK02889 241 SNSAPAWSPDGRTLAVALSRDGNSQIYTVNA-DGSGLRRL---T-QSSGIDTEPFFSPDGR-SIYFTSDRGGAPQIYRMP 314 (427)
T ss_pred CccceEECCCCCEEEEEEccCCCceEEEEEC-CCCCcEEC---C-CCCCCCcCeEEcCCCC-EEEEEecCCCCcEEEEEE
Confidence 3567899999999987654455556665432 11222222 1 1223456788999765 4555554 344 55556
Q ss_pred eCCC-ceeee---cceeEEEeccCCCEEEEEecCc----eEEEccC
Q 000733 185 VNGP-LEDVM---DNVDAVEWSVKGKFVAVAKKNV----LSILTSK 222 (1324)
Q Consensus 185 l~e~-lk~Va---sgVScVcWSPKGKQLVVGlaDG----IsQyTPD 222 (1324)
+..+ .+.+. ......+|||+|++||+...++ |..|..+
T Consensus 315 ~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~ 360 (427)
T PRK02889 315 ASGGAAQRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLA 360 (427)
T ss_pred CCCCceEEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECC
Confidence 5433 22222 2244689999999999877653 6666543
No 123
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=96.59 E-value=0.013 Score=65.70 Aligned_cols=118 Identities=13% Similarity=0.158 Sum_probs=86.6
Q ss_pred CeeEEEEecCCCEEEEEeecCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEEEEeCC
Q 000733 108 NVDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGGVNG 187 (1324)
Q Consensus 108 ~VshLAFSsDEs~LAVcaesGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl~e 187 (1324)
.|..+||+-|-.+|+..... ..|+|||+... ..|..++.=. ...||.+.|+-... .++--+.||++++||...
T Consensus 102 ivk~~af~~ds~~lltgg~e-kllrvfdln~p----~App~E~~gh-tg~Ir~v~wc~eD~-~iLSSadd~tVRLWD~rT 174 (334)
T KOG0278|consen 102 IVKAVAFSQDSNYLLTGGQE-KLLRVFDLNRP----KAPPKEISGH-TGGIRTVLWCHEDK-CILSSADDKTVRLWDHRT 174 (334)
T ss_pred eeeeEEecccchhhhccchH-HHhhhhhccCC----CCCchhhcCC-CCcceeEEEeccCc-eEEeeccCCceEEEEecc
Confidence 57889999999998776533 47889986643 4444444332 36799999988554 555558999999999975
Q ss_pred Cc--ee--eecceeEEEeccCCCEEEEEecCceEEEccC-cccccccccC
Q 000733 188 PL--ED--VMDNVDAVEWSVKGKFVAVAKKNVLSILTSK-LKERLPISLS 232 (1324)
Q Consensus 188 ~l--k~--VasgVScVcWSPKGKQLVVGlaDGIsQyTPD-geeKkvIP~P 232 (1324)
+. .. ....|+++.-|++|..|.++...+|..|.++ +...+..-.|
T Consensus 175 gt~v~sL~~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~P 224 (334)
T KOG0278|consen 175 GTEVQSLEFNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKMP 224 (334)
T ss_pred CcEEEEEecCCCCcceeeccCCCEEEEecCceeEEeccccccceeeccCc
Confidence 52 22 2489999999999999998888889999875 4544444444
No 124
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=96.58 E-value=0.023 Score=67.69 Aligned_cols=148 Identities=14% Similarity=0.143 Sum_probs=107.7
Q ss_pred CCcceEeeCCcceEEEEEc-CCc-eEEE--EehHHHHHHhhcccCCcccccccceeeeecCCCCCeeEEEEecCCCEEEE
Q 000733 48 PSLPLAVSQLSHQLIFAAH-SSG-FCVA--RTNDVIDAAKEMKENGTRCCVQELSVVDVPFENENVDILSLSNDESTLAV 123 (1324)
Q Consensus 48 ~sSLLAVSN~K~GLvfAAg-pdG-LvVa--rTsDLr~a~ksa~en~tv~~~~dl~vi~VPLp~s~VshLAFSsDEs~LAV 123 (1324)
+.+-|+-+| .|++.+|+ -.| +++- .|-.|+..+.. .. ..|++|-|+-|+.+++.
T Consensus 83 ~v~al~s~n--~G~~l~ag~i~g~lYlWelssG~LL~v~~a-----------HY---------Q~ITcL~fs~dgs~iiT 140 (476)
T KOG0646|consen 83 PVHALASSN--LGYFLLAGTISGNLYLWELSSGILLNVLSA-----------HY---------QSITCLKFSDDGSHIIT 140 (476)
T ss_pred ceeeeecCC--CceEEEeecccCcEEEEEeccccHHHHHHh-----------hc---------cceeEEEEeCCCcEEEe
Confidence 466677677 66666655 444 5553 33344433211 11 15999999999998777
Q ss_pred EeecCCeEEEEEcccccCC----CCcceeEEecCCCcceEEEEecCC-CCCeEEEEEeCCeEEEEEeCCCcee---e-ec
Q 000733 124 SLYQSPHIHFFSVHSLLNK----EIKPSFSCSLNGSTYVKDIRWRKK-PENSFLALSNVGRLYRGGVNGPLED---V-MD 194 (1324)
Q Consensus 124 caesGg~L~VYDV~SLlng----~t~P~~sisLn~st~VrdLaWNP~-~aslLAVVSsDGsL~Vldl~e~lk~---V-as 194 (1324)
+. ++|.|++|++..|+.. .+.|++.|.= +.-.|.||.=.++ ....++.++.|.++.+||+..+..+ + ..
T Consensus 141 gs-kDg~V~vW~l~~lv~a~~~~~~~p~~~f~~-HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~ 218 (476)
T KOG0646|consen 141 GS-KDGAVLVWLLTDLVSADNDHSVKPLHIFSD-HTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPS 218 (476)
T ss_pred cC-CCccEEEEEEEeecccccCCCccceeeecc-CcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCC
Confidence 65 5679999999999864 5667766543 3478999999887 4568889999999999999766222 2 25
Q ss_pred ceeEEEeccCCCEEEEEecCc-eEEE
Q 000733 195 NVDAVEWSVKGKFVAVAKKNV-LSIL 219 (1324)
Q Consensus 195 gVScVcWSPKGKQLVVGlaDG-IsQy 219 (1324)
.+.|+.-.|-+..+.+|..+| |.|.
T Consensus 219 si~av~lDpae~~~yiGt~~G~I~~~ 244 (476)
T KOG0646|consen 219 SIKAVALDPAERVVYIGTEEGKIFQN 244 (476)
T ss_pred cceeEEEcccccEEEecCCcceEEee
Confidence 778999999999999999999 7776
No 125
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=96.57 E-value=0.025 Score=64.06 Aligned_cols=120 Identities=11% Similarity=0.143 Sum_probs=93.5
Q ss_pred CeeEEEEecCCCEEEEEeec----CCeEEEEEcccccCC--CCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEE
Q 000733 108 NVDILSLSNDESTLAVSLYQ----SPHIHFFSVHSLLNK--EIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLY 181 (1324)
Q Consensus 108 ~VshLAFSsDEs~LAVcaes----Gg~L~VYDV~SLlng--~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~ 181 (1324)
.|.-+.|+.+|.+.++|... -+.|.+||++..-.. ...|+..|.... ..+....|.| ....++.+-.||+|.
T Consensus 95 ~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~-skit~a~Wg~-l~~~ii~Ghe~G~is 172 (327)
T KOG0643|consen 95 PVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPD-SKITSALWGP-LGETIIAGHEDGSIS 172 (327)
T ss_pred eeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCc-cceeeeeecc-cCCEEEEecCCCcEE
Confidence 49999999999977777743 568999999955422 577888888865 6788899999 445889999999999
Q ss_pred EEEeCCCceee------ecceeEEEeccCCCEEEEEecCc-eEEEcc-Cccccccc
Q 000733 182 RGGVNGPLEDV------MDNVDAVEWSVKGKFVAVAKKNV-LSILTS-KLKERLPI 229 (1324)
Q Consensus 182 Vldl~e~lk~V------asgVScVcWSPKGKQLVVGlaDG-IsQyTP-DgeeKkvI 229 (1324)
+||+..+.+.+ ...++.++.||++.+.+.|+.|. -..+.- +++..++.
T Consensus 173 ~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty 228 (327)
T KOG0643|consen 173 IYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTY 228 (327)
T ss_pred EEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEe
Confidence 99998654333 46899999999999999999998 666632 34444444
No 126
>PRK04922 tolB translocation protein TolB; Provisional
Probab=96.55 E-value=0.018 Score=67.50 Aligned_cols=118 Identities=9% Similarity=0.120 Sum_probs=74.4
Q ss_pred eeEEEEecCCCEEEEEeecCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCC---eEEEEEe
Q 000733 109 VDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVG---RLYRGGV 185 (1324)
Q Consensus 109 VshLAFSsDEs~LAVcaesGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDG---sL~Vldl 185 (1324)
...++|++|+..|+.+...++...+|.+. +-.+.... +...+ .......|+|+.. .+++++.++ .|+++|+
T Consensus 294 ~~~~~~spDG~~l~f~sd~~g~~~iy~~d-l~~g~~~~---lt~~g-~~~~~~~~SpDG~-~Ia~~~~~~~~~~I~v~d~ 367 (433)
T PRK04922 294 DTEPTWAPDGKSIYFTSDRGGRPQIYRVA-ASGGSAER---LTFQG-NYNARASVSPDGK-KIAMVHGSGGQYRIAVMDL 367 (433)
T ss_pred ccceEECCCCCEEEEEECCCCCceEEEEE-CCCCCeEE---eecCC-CCccCEEECCCCC-EEEEEECCCCceeEEEEEC
Confidence 35679999999998877544444444432 11222222 22222 3445789999665 566665443 5899998
Q ss_pred CCC-ceeee--cceeEEEeccCCCEEEEEecCc----eEEEccCcccccccccC
Q 000733 186 NGP-LEDVM--DNVDAVEWSVKGKFVAVAKKNV----LSILTSKLKERLPISLS 232 (1324)
Q Consensus 186 ~e~-lk~Va--sgVScVcWSPKGKQLVVGlaDG----IsQyTPDgeeKkvIP~P 232 (1324)
..+ .+.+. ......+|||+|+.|++...++ |..+..++...+.|+.+
T Consensus 368 ~~g~~~~Lt~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~~~~~l~~~ 421 (433)
T PRK04922 368 STGSVRTLTPGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGRVRQRLVSA 421 (433)
T ss_pred CCCCeEECCCCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCceEEcccC
Confidence 644 33333 2345679999999999887752 77777777666666544
No 127
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=96.55 E-value=0.013 Score=68.38 Aligned_cols=108 Identities=20% Similarity=0.290 Sum_probs=79.5
Q ss_pred CeeEEEEecCCCEEEEEeecCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEEEEeCC
Q 000733 108 NVDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGGVNG 187 (1324)
Q Consensus 108 ~VshLAFSsDEs~LAVcaesGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl~e 187 (1324)
.+..++.+++.. |++|.-.+..|++||=+.- .+ ..+..++ +++..-|..++|||.....|+-++-||++.+||+..
T Consensus 302 sl~~i~~~~~~~-Ll~~gssdr~irl~DPR~~-~g-s~v~~s~-~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS 377 (423)
T KOG0313|consen 302 SLNCISYSPLSK-LLASGSSDRHIRLWDPRTG-DG-SVVSQSL-IGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRS 377 (423)
T ss_pred ceeEeecccccc-eeeecCCCCceeecCCCCC-CC-ceeEEee-ecchhhhhheecCCCCceEEEEEecCCeEEEEEecc
Confidence 345667777555 5666656789999998864 22 2222221 244468999999999988999999999999999964
Q ss_pred C---ceee---ecceeEEEeccCCCEEEEEecCc-eEEEc
Q 000733 188 P---LEDV---MDNVDAVEWSVKGKFVAVAKKNV-LSILT 220 (1324)
Q Consensus 188 ~---lk~V---asgVScVcWSPKGKQLVVGlaDG-IsQyT 220 (1324)
. +-.+ .+.|.||.|. +|+.||.|++|- |.+|.
T Consensus 378 ~k~plydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~~ 416 (423)
T KOG0313|consen 378 TKAPLYDIAGHNDKVLSVDWN-EGGLIVSGGADNKLRIFK 416 (423)
T ss_pred CCCcceeeccCCceEEEEecc-CCceEEeccCcceEEEec
Confidence 3 2222 3899999995 677899999999 88885
No 128
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=96.55 E-value=0.037 Score=64.21 Aligned_cols=108 Identities=14% Similarity=0.089 Sum_probs=82.8
Q ss_pred eeEEEEecCCCEEEEEeec---CCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEEEEe
Q 000733 109 VDILSLSNDESTLAVSLYQ---SPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGGV 185 (1324)
Q Consensus 109 VshLAFSsDEs~LAVcaes---Gg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl 185 (1324)
..+++.+|.+.+++...+. ...|.|||++.-. +++..+.=.+..-|.+|+|-|..+++++.-+.||-+-++|+
T Consensus 120 f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~q----q~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~ 195 (376)
T KOG1188|consen 120 FICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQ----QLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDT 195 (376)
T ss_pred ceEeeccCcCCeEEeccccccCceEEEEEEecccc----chhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeec
Confidence 6788899999977766653 7799999999642 22332222344679999999999999999999999999999
Q ss_pred CCCc------ee--eecceeEEEeccCC-CEEEEEecCc-eEEEc
Q 000733 186 NGPL------ED--VMDNVDAVEWSVKG-KFVAVAKKNV-LSILT 220 (1324)
Q Consensus 186 ~e~l------k~--VasgVScVcWSPKG-KQLVVGlaDG-IsQyT 220 (1324)
+... .+ +.+-|.|+.|.-|| |+|.+-+-.+ +.+|.
T Consensus 196 ~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~e 240 (376)
T KOG1188|consen 196 KKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYE 240 (376)
T ss_pred CCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEE
Confidence 7431 11 24679999999999 6788888887 99994
No 129
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=96.53 E-value=0.017 Score=68.43 Aligned_cols=104 Identities=11% Similarity=0.155 Sum_probs=75.2
Q ss_pred CeeEEEEecCCCEEEEEeecCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEEEEeCC
Q 000733 108 NVDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGGVNG 187 (1324)
Q Consensus 108 ~VshLAFSsDEs~LAVcaesGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl~e 187 (1324)
.++..+|.+||++|+.... ++.|.|||+.+=.+ +..+.. +...|+.++|.=+.- .+|+-.+||++.+||+..
T Consensus 349 ~~ts~~fHpDgLifgtgt~-d~~vkiwdlks~~~-----~a~Fpg-ht~~vk~i~FsENGY-~Lat~add~~V~lwDLRK 420 (506)
T KOG0289|consen 349 EYTSAAFHPDGLIFGTGTP-DGVVKIWDLKSQTN-----VAKFPG-HTGPVKAISFSENGY-WLATAADDGSVKLWDLRK 420 (506)
T ss_pred eeEEeeEcCCceEEeccCC-CceEEEEEcCCccc-----cccCCC-CCCceeEEEeccCce-EEEEEecCCeEEEEEehh
Confidence 3788999999998777664 47999999886432 222222 457899999965433 677778899999999963
Q ss_pred C--ceeee----cceeEEEeccCCCEEEEEecCc-eEEE
Q 000733 188 P--LEDVM----DNVDAVEWSVKGKFVAVAKKNV-LSIL 219 (1324)
Q Consensus 188 ~--lk~Va----sgVScVcWSPKGKQLVVGlaDG-IsQy 219 (1324)
- .+.+. .+|.++|+-+-|++|++|+.+= |.+|
T Consensus 421 l~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~ 459 (506)
T KOG0289|consen 421 LKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYIC 459 (506)
T ss_pred hcccceeeccccccceeEEEcCCCCeEEeecceeEEEEE
Confidence 2 33321 3599999999999999994443 5555
No 130
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=96.52 E-value=0.018 Score=65.69 Aligned_cols=116 Identities=13% Similarity=0.199 Sum_probs=75.2
Q ss_pred eeEEEEecCCCEEEEEeecCC--eEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCC---eEEEE
Q 000733 109 VDILSLSNDESTLAVSLYQSP--HIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVG---RLYRG 183 (1324)
Q Consensus 109 VshLAFSsDEs~LAVcaesGg--~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDG---sL~Vl 183 (1324)
....+|++|+..|+.+...++ .|++|++.. +... .+... +..+..+.|+|+.. .+++...++ .|+++
T Consensus 280 ~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~---~~~~---~l~~~-~~~~~~~~~spdg~-~i~~~~~~~~~~~i~~~ 351 (417)
T TIGR02800 280 DTEPSWSPDGKSIAFTSDRGGSPQIYMMDADG---GEVR---RLTFR-GGYNASPSWSPDGD-LIAFVHREGGGFNIAVM 351 (417)
T ss_pred CCCEEECCCCCEEEEEECCCCCceEEEEECCC---CCEE---EeecC-CCCccCeEECCCCC-EEEEEEccCCceEEEEE
Confidence 345689999999887775544 455555432 2222 22222 24567789999764 566666665 78999
Q ss_pred EeCCC-ceeee--cceeEEEeccCCCEEEEEecCc----eEEEccCcccccccccC
Q 000733 184 GVNGP-LEDVM--DNVDAVEWSVKGKFVAVAKKNV----LSILTSKLKERLPISLS 232 (1324)
Q Consensus 184 dl~e~-lk~Va--sgVScVcWSPKGKQLVVGlaDG----IsQyTPDgeeKkvIP~P 232 (1324)
|+... .+.+. ......+|||+|++|++...++ +.++.-++.....|+.|
T Consensus 352 d~~~~~~~~l~~~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~g~~~~~~~~~ 407 (417)
T TIGR02800 352 DLDGGGERVLTDTGLDESPSFAPNGRMILYATTRGGRGVLGLVSTDGRFRARLPLG 407 (417)
T ss_pred eCCCCCeEEccCCCCCCCceECCCCCEEEEEEeCCCcEEEEEEECCCceeeECCCC
Confidence 98654 23332 2345679999999999988775 66666667666666554
No 131
>PRK00178 tolB translocation protein TolB; Provisional
Probab=96.51 E-value=0.019 Score=66.68 Aligned_cols=107 Identities=13% Similarity=0.154 Sum_probs=68.6
Q ss_pred CeeEEEEecCCCEEEEEeec--CCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCC--eEEEE
Q 000733 108 NVDILSLSNDESTLAVSLYQ--SPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVG--RLYRG 183 (1324)
Q Consensus 108 ~VshLAFSsDEs~LAVcaes--Gg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDG--sL~Vl 183 (1324)
.+...++|+|+..|+.+... ...|.+|++.+ +..+.+... . ..+....|+|+....+..+..+| .|+++
T Consensus 200 ~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~---g~~~~l~~~--~--g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~ 272 (430)
T PRK00178 200 PILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDT---GRREQITNF--E--GLNGAPAWSPDGSKLAFVLSKDGNPEIYVM 272 (430)
T ss_pred ceeeeeECCCCCEEEEEEcCCCCCEEEEEECCC---CCEEEccCC--C--CCcCCeEECCCCCEEEEEEccCCCceEEEE
Confidence 56788999999998776533 35788888754 333333211 1 23457899997654333455566 58999
Q ss_pred EeCCC-ceeee---cceeEEEeccCCCEEEEEecC-c---eEEEcc
Q 000733 184 GVNGP-LEDVM---DNVDAVEWSVKGKFVAVAKKN-V---LSILTS 221 (1324)
Q Consensus 184 dl~e~-lk~Va---sgVScVcWSPKGKQLVVGlaD-G---IsQyTP 221 (1324)
|+..+ .+.+. ......+|||+|++|++.... | |..|..
T Consensus 273 d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~ 318 (430)
T PRK00178 273 DLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNV 318 (430)
T ss_pred ECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEEC
Confidence 98754 22222 345678999999999887653 4 555543
No 132
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=96.49 E-value=0.0033 Score=71.87 Aligned_cols=108 Identities=14% Similarity=0.119 Sum_probs=79.1
Q ss_pred CCeeEEEEecCCCEEEEEeecCCeEEEEEcccccC-C----CCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEE
Q 000733 107 ENVDILSLSNDESTLAVSLYQSPHIHFFSVHSLLN-K----EIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLY 181 (1324)
Q Consensus 107 s~VshLAFSsDEs~LAVcaesGg~L~VYDV~SLln-g----~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~ 181 (1324)
+.+.+.-||+|+.+|+.... +|.|.||+--+-.- + +.+--+. . .+..|.++.++.+. +++|.-+.||.+.
T Consensus 214 Sh~EcA~FSPDgqyLvsgSv-DGFiEVWny~~GKlrKDLkYQAqd~fM--M-md~aVlci~FSRDs-EMlAsGsqDGkIK 288 (508)
T KOG0275|consen 214 SHVECARFSPDGQYLVSGSV-DGFIEVWNYTTGKLRKDLKYQAQDNFM--M-MDDAVLCISFSRDS-EMLASGSQDGKIK 288 (508)
T ss_pred cchhheeeCCCCceEeeccc-cceeeeehhccchhhhhhhhhhhccee--e-cccceEEEeecccH-HHhhccCcCCcEE
Confidence 35677899999999987664 47999997443221 1 1111111 1 13579999998854 5899999999999
Q ss_pred EEEeCCCc------eeeecceeEEEeccCCCEEEEEecCc-eEEE
Q 000733 182 RGGVNGPL------EDVMDNVDAVEWSVKGKFVAVAKKNV-LSIL 219 (1324)
Q Consensus 182 Vldl~e~l------k~VasgVScVcWSPKGKQLVVGlaDG-IsQy 219 (1324)
||.+..+. +.+..||+|+.+|.+|.||..++-|- +.+-
T Consensus 289 vWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiH 333 (508)
T KOG0275|consen 289 VWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIH 333 (508)
T ss_pred EEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEe
Confidence 99997652 24458999999999999999998887 5554
No 133
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=96.49 E-value=0.1 Score=62.20 Aligned_cols=138 Identities=16% Similarity=0.093 Sum_probs=96.7
Q ss_pred CCCeeEEEEecCCCEEEEEeecCCeEEEEEcccccCCCCcceeEEecC-CCcceEEEEecCCCCCeEEEEEeCCeEEEEE
Q 000733 106 NENVDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLN-GSTYVKDIRWRKKPENSFLALSNVGRLYRGG 184 (1324)
Q Consensus 106 ~s~VshLAFSsDEs~LAVcaesGg~L~VYDV~SLlng~t~P~~sisLn-~st~VrdLaWNP~~aslLAVVSsDGsL~Vld 184 (1324)
.+.|..+.+.+.|.||+.+. +++...|+|.++-.+ +...+-+ .+..+...++-|+.- .|+.-+.||.|.|||
T Consensus 303 ~~~V~~ls~h~tgeYllsAs-~d~~w~Fsd~~~g~~-----lt~vs~~~s~v~~ts~~fHpDgL-ifgtgt~d~~vkiwd 375 (506)
T KOG0289|consen 303 EEPVTGLSLHPTGEYLLSAS-NDGTWAFSDISSGSQ-----LTVVSDETSDVEYTSAAFHPDGL-IFGTGTPDGVVKIWD 375 (506)
T ss_pred cccceeeeeccCCcEEEEec-CCceEEEEEccCCcE-----EEEEeeccccceeEEeeEcCCce-EEeccCCCceEEEEE
Confidence 35689999999999987766 457888888775322 2222221 235688889988543 788889999999999
Q ss_pred eCCCce-----eeecceeEEEeccCCCEEEEEecCc-eEEEccCccc---ccccccCccccCCCCCCCCceeEEEEEEec
Q 000733 185 VNGPLE-----DVMDNVDAVEWSVKGKFVAVAKKNV-LSILTSKLKE---RLPISLSFKSWVGDCDVNCSVKVDSIRWVR 255 (1324)
Q Consensus 185 l~e~lk-----~VasgVScVcWSPKGKQLVVGlaDG-IsQyTPDgee---KkvIP~Pf~S~I~D~d~d~sV~V~SI~WLe 255 (1324)
++.+.. -+...|+++++|-.|=+||++..|| |..| |+.. -++|+.+- ...|.++..--
T Consensus 376 lks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lw--DLRKl~n~kt~~l~~-----------~~~v~s~~fD~ 442 (506)
T KOG0289|consen 376 LKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLW--DLRKLKNFKTIQLDE-----------KKEVNSLSFDQ 442 (506)
T ss_pred cCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEE--Eehhhcccceeeccc-----------cccceeEEEcC
Confidence 986531 1347899999999999999999999 9999 5433 33444331 12455666555
Q ss_pred CCeEEEEE
Q 000733 256 RDCIIIGC 263 (1324)
Q Consensus 256 Nd~yLFg~ 263 (1324)
...|+..+
T Consensus 443 SGt~L~~~ 450 (506)
T KOG0289|consen 443 SGTYLGIA 450 (506)
T ss_pred CCCeEEee
Confidence 55576554
No 134
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=96.44 E-value=0.029 Score=68.00 Aligned_cols=110 Identities=19% Similarity=0.211 Sum_probs=76.8
Q ss_pred eecCC-CCCeeEEEEecCCCEEEEEeec-CCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEE---E
Q 000733 101 DVPFE-NENVDILSLSNDESTLAVSLYQ-SPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLAL---S 175 (1324)
Q Consensus 101 ~VPLp-~s~VshLAFSsDEs~LAVcaes-Gg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVV---S 175 (1324)
.|||+ .+.|+.+.++++++-.+||+-= -.-+.|||.+ -.|++.+.-+ +=+++.|||... .++++ .
T Consensus 264 ~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr------~~~v~df~eg---pRN~~~fnp~g~-ii~lAGFGN 333 (566)
T KOG2315|consen 264 SVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR------GKPVFDFPEG---PRNTAFFNPHGN-IILLAGFGN 333 (566)
T ss_pred EEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCC------CCEeEeCCCC---CccceEECCCCC-EEEEeecCC
Confidence 45555 4579999999999999999911 1357777754 4566654433 357899999543 44444 3
Q ss_pred eCCeEEEEEeCCCc---eeeecceeEEEeccCCCEEEEEe-------cCceEEEc
Q 000733 176 NVGRLYRGGVNGPL---EDVMDNVDAVEWSVKGKFVAVAK-------KNVLSILT 220 (1324)
Q Consensus 176 sDGsL~Vldl~e~l---k~VasgVScVcWSPKGKQLVVGl-------aDGIsQyT 220 (1324)
--|.+-|||+.+.- +..+.+.+-+.|||+|.++++++ .||+.+|-
T Consensus 334 L~G~mEvwDv~n~K~i~~~~a~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwh 388 (566)
T KOG2315|consen 334 LPGDMEVWDVPNRKLIAKFKAANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWH 388 (566)
T ss_pred CCCceEEEeccchhhccccccCCceEEEEcCCCcEEEEEeccccEEecCCeEEEE
Confidence 46778999997641 23357888899999999998874 35666663
No 135
>PRK04792 tolB translocation protein TolB; Provisional
Probab=96.39 E-value=0.033 Score=66.14 Aligned_cols=107 Identities=15% Similarity=0.140 Sum_probs=67.4
Q ss_pred CeeEEEEecCCCEEEEEeec--CCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCe--EEEE
Q 000733 108 NVDILSLSNDESTLAVSLYQ--SPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGR--LYRG 183 (1324)
Q Consensus 108 ~VshLAFSsDEs~LAVcaes--Gg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGs--L~Vl 183 (1324)
.+...+||+||..|+.+... ...|.+||+.+ +....+..+ . .......|+|+....+.+...+|. |+++
T Consensus 219 ~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~t---g~~~~lt~~--~--g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~ 291 (448)
T PRK04792 219 PLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYT---QVREKVTSF--P--GINGAPRFSPDGKKLALVLSKDGQPEIYVV 291 (448)
T ss_pred cccCceECCCCCEEEEEEecCCCcEEEEEECCC---CCeEEecCC--C--CCcCCeeECCCCCEEEEEEeCCCCeEEEEE
Confidence 34578999999998876543 24678888654 333333221 1 123478999976643334456675 8888
Q ss_pred EeCCC-ceeee---cceeEEEeccCCCEEEEEecC-c---eEEEcc
Q 000733 184 GVNGP-LEDVM---DNVDAVEWSVKGKFVAVAKKN-V---LSILTS 221 (1324)
Q Consensus 184 dl~e~-lk~Va---sgVScVcWSPKGKQLVVGlaD-G---IsQyTP 221 (1324)
|+..+ .+.+. ......+|||+|+.|++.... | |..|..
T Consensus 292 dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl 337 (448)
T PRK04792 292 DIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNL 337 (448)
T ss_pred ECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEEC
Confidence 98644 23332 345779999999999877653 4 444443
No 136
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=96.38 E-value=0.066 Score=66.18 Aligned_cols=131 Identities=11% Similarity=0.165 Sum_probs=93.7
Q ss_pred CCeeEEEEecCCCEEEEEeecCCeEEEEEcccccCCCCcceeEEec--CCCcceEEEEecCCCCCeEEEEEeCCeEEEEE
Q 000733 107 ENVDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSL--NGSTYVKDIRWRKKPENSFLALSNVGRLYRGG 184 (1324)
Q Consensus 107 s~VshLAFSsDEs~LAVcaesGg~L~VYDV~SLlng~t~P~~sisL--n~st~VrdLaWNP~~aslLAVVSsDGsL~Vld 184 (1324)
+.|..||||.+...|||..++ |.|.+|+++. .++....+ +.+..|-.|+|.+.. .+.-+.-+|++.=||
T Consensus 26 s~I~slA~s~kS~~lAvsRt~-g~IEiwN~~~------~w~~~~vi~g~~drsIE~L~W~e~~--RLFS~g~sg~i~EwD 96 (691)
T KOG2048|consen 26 SEIVSLAYSHKSNQLAVSRTD-GNIEIWNLSN------NWFLEPVIHGPEDRSIESLAWAEGG--RLFSSGLSGSITEWD 96 (691)
T ss_pred cceEEEEEeccCCceeeeccC-CcEEEEccCC------CceeeEEEecCCCCceeeEEEccCC--eEEeecCCceEEEEe
Confidence 359999999999999998866 6899999885 33333333 345789999998643 466667799999999
Q ss_pred eCCCceee-----ecceeEEEeccCCCEEEEEecCc-eEEEc--cC-cccccccccCccccCCCCCCCCceeEEEEEEec
Q 000733 185 VNGPLEDV-----MDNVDAVEWSVKGKFVAVAKKNV-LSILT--SK-LKERLPISLSFKSWVGDCDVNCSVKVDSIRWVR 255 (1324)
Q Consensus 185 l~e~lk~V-----asgVScVcWSPKGKQLVVGlaDG-IsQyT--PD-geeKkvIP~Pf~S~I~D~d~d~sV~V~SI~WLe 255 (1324)
+......+ +..+=++|-+|-++++++|+.|| +..+. |+ .+-++.+.+. .-+|.+|.|-.
T Consensus 97 l~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq------------~sRvLslsw~~ 164 (691)
T KOG2048|consen 97 LHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQ------------KSRVLSLSWNP 164 (691)
T ss_pred cccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccc------------cceEEEEEecC
Confidence 97542222 34566888889999999999999 55553 33 2223334432 13899999987
Q ss_pred CCe
Q 000733 256 RDC 258 (1324)
Q Consensus 256 Nd~ 258 (1324)
++.
T Consensus 165 ~~~ 167 (691)
T KOG2048|consen 165 TGT 167 (691)
T ss_pred Ccc
Confidence 765
No 137
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=96.36 E-value=0.43 Score=52.02 Aligned_cols=182 Identities=12% Similarity=0.065 Sum_probs=107.2
Q ss_pred ceEEEEEcCCceEEEEehHHHHHHhhcccCCcccccccceeeeecCCCCCeeEEEEecCCCEEEEEeecCCeEEEEEccc
Q 000733 59 HQLIFAAHSSGFCVARTNDVIDAAKEMKENGTRCCVQELSVVDVPFENENVDILSLSNDESTLAVSLYQSPHIHFFSVHS 138 (1324)
Q Consensus 59 ~GLvfAAgpdGLvVarTsDLr~a~ksa~en~tv~~~~dl~vi~VPLp~s~VshLAFSsDEs~LAVcaesGg~L~VYDV~S 138 (1324)
.-.+++|+.+|+.++.. ... ... . .-.... .|.+|++-.+-..|++.. |+.|++|++.+
T Consensus 7 ~~~L~vGt~~Gl~~~~~-------~~~--~~~----~----~i~~~~--~I~ql~vl~~~~~llvLs--d~~l~~~~L~~ 65 (275)
T PF00780_consen 7 GDRLLVGTEDGLYVYDL-------SDP--SKP----T----RILKLS--SITQLSVLPELNLLLVLS--DGQLYVYDLDS 65 (275)
T ss_pred CCEEEEEECCCEEEEEe-------cCC--ccc----e----eEeecc--eEEEEEEecccCEEEEEc--CCccEEEEchh
Confidence 34567778899888866 100 000 0 111222 499999999888888888 79999999999
Q ss_pred ccCCCCc-cee-------EEecCCCcceEEEE-ecCCCCCeEEEEEeCCeEEEEEeCCC---c-eee-----ecceeEEE
Q 000733 139 LLNKEIK-PSF-------SCSLNGSTYVKDIR-WRKKPENSFLALSNVGRLYRGGVNGP---L-EDV-----MDNVDAVE 200 (1324)
Q Consensus 139 Llng~t~-P~~-------sisLn~st~VrdLa-WNP~~aslLAVVSsDGsL~Vldl~e~---l-k~V-----asgVScVc 200 (1324)
+...... +.. ...++....+..++ =.........+|.....|.++..... . +.+ .+.+.+++
T Consensus 66 l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~ 145 (275)
T PF00780_consen 66 LEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIA 145 (275)
T ss_pred hccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEE
Confidence 9865321 111 11232223455555 11222335666666779998887542 2 222 37899999
Q ss_pred eccCCCEEEEEecCceEEEccCcccccccccCccccCCCCCCCCceeEEEEEEecCCeEEEEE
Q 000733 201 WSVKGKFVAVAKKNVLSILTSKLKERLPISLSFKSWVGDCDVNCSVKVDSIRWVRRDCIIIGC 263 (1324)
Q Consensus 201 WSPKGKQLVVGlaDGIsQyTPDgeeKkvIP~Pf~S~I~D~d~d~sV~V~SI~WLeNd~yLFg~ 263 (1324)
|. +..|++|..++...+..+-.....++.+......=.......+...+..+.+++|++++
T Consensus 146 ~~--~~~i~v~~~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Ll~~ 206 (275)
T PF00780_consen 146 FL--GNKICVGTSKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSDNEFLLCY 206 (275)
T ss_pred Ee--CCEEEEEeCCceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeCCceEEEEe
Confidence 99 88999999999777755422333443331100000001122356677778877888765
No 138
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=96.36 E-value=0.054 Score=62.47 Aligned_cols=106 Identities=14% Similarity=0.166 Sum_probs=83.3
Q ss_pred CeeEEEEecCCCEEEEEeecCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEEEEeCC
Q 000733 108 NVDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGGVNG 187 (1324)
Q Consensus 108 ~VshLAFSsDEs~LAVcaesGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl~e 187 (1324)
.|..|+.|.||..|+.+.. +-.|.+||+.+ |. ++.+++.+ .+|--..|-|...+.++++--+-.=+|.++.+
T Consensus 67 pi~sl~WS~dgr~LltsS~-D~si~lwDl~~---gs--~l~rirf~--spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~ 138 (405)
T KOG1273|consen 67 PITSLCWSRDGRKLLTSSR-DWSIKLWDLLK---GS--PLKRIRFD--SPVWGAQWHPRKRNKCVATIMEESPVVIDFSD 138 (405)
T ss_pred ceeEEEecCCCCEeeeecC-CceeEEEeccC---CC--ceeEEEcc--CccceeeeccccCCeEEEEEecCCcEEEEecC
Confidence 4899999999998877664 46899999875 33 88899986 57889999998877777777777777777765
Q ss_pred Cce-ee--------ecceeEEEeccCCCEEEEEecCc-eEEEcc
Q 000733 188 PLE-DV--------MDNVDAVEWSVKGKFVAVAKKNV-LSILTS 221 (1324)
Q Consensus 188 ~lk-~V--------asgVScVcWSPKGKQLVVGlaDG-IsQyTP 221 (1324)
+.. .+ -.-.+|+.+-++||+|.+|.+-| +.+|.-
T Consensus 139 ~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a 182 (405)
T KOG1273|consen 139 PKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDA 182 (405)
T ss_pred CceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEec
Confidence 422 22 13456778899999999999999 999954
No 139
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.33 E-value=0.071 Score=61.37 Aligned_cols=113 Identities=14% Similarity=0.151 Sum_probs=77.2
Q ss_pred CCeeEEEEec--CCCEEEEEeecCCeEEEEEcccccCCCCcc-eeEEe-----c-CCCcceEEEEecCCC--CCeEEEEE
Q 000733 107 ENVDILSLSN--DESTLAVSLYQSPHIHFFSVHSLLNKEIKP-SFSCS-----L-NGSTYVKDIRWRKKP--ENSFLALS 175 (1324)
Q Consensus 107 s~VshLAFSs--DEs~LAVcaesGg~L~VYDV~SLlng~t~P-~~sis-----L-n~st~VrdLaWNP~~--aslLAVVS 175 (1324)
+.|.-|.|.+ =|+.||.|. .+|.|++|+.-..++-..-+ ..+|. + .+...--++-|||.. ..+|||-.
T Consensus 113 ssV~DV~FaP~hlGLklA~~~-aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs 191 (361)
T KOG2445|consen 113 SSVTDVKFAPKHLGLKLAAAS-ADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGS 191 (361)
T ss_pred cceeEEEecchhcceEEEEec-cCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEc
Confidence 4688888876 566666666 45799999988776531100 01111 1 233567789999974 34677666
Q ss_pred eC-----CeEEEEEeCCCc-ee--------eecceeEEEeccC-CC---EEEEEecCceEEEc
Q 000733 176 NV-----GRLYRGGVNGPL-ED--------VMDNVDAVEWSVK-GK---FVAVAKKNVLSILT 220 (1324)
Q Consensus 176 sD-----GsL~Vldl~e~l-k~--------VasgVScVcWSPK-GK---QLVVGlaDGIsQyT 220 (1324)
.+ +..+||..++.. +. +.+-|+.+||.|. |. +||+|++|||.+|+
T Consensus 192 ~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDgv~I~~ 254 (361)
T KOG2445|consen 192 DEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDGVRIFK 254 (361)
T ss_pred ccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCcEEEEE
Confidence 55 478888876543 21 2478999999997 54 88999999988885
No 140
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=96.31 E-value=0.024 Score=70.41 Aligned_cols=151 Identities=14% Similarity=0.105 Sum_probs=106.0
Q ss_pred eEeeCCcceEEEEEcCCceEEEEehHHHHHHhhcccCCcccccccceeeeecCCCCCeeEEEEecCCCEEEEEeecCCeE
Q 000733 52 LAVSQLSHQLIFAAHSSGFCVARTNDVIDAAKEMKENGTRCCVQELSVVDVPFENENVDILSLSNDESTLAVSLYQSPHI 131 (1324)
Q Consensus 52 LAVSN~K~GLvfAAgpdGLvVarTsDLr~a~ksa~en~tv~~~~dl~vi~VPLp~s~VshLAFSsDEs~LAVcaesGg~L 131 (1324)
.+++. .--.+|.+..+-++++..+.=+.+....+ + .- ...++.++++||+.+|+++. ++..|
T Consensus 25 ~~~s~-nG~~L~t~~~d~Vi~idv~t~~~~l~s~~-~------------ed---~d~ita~~l~~d~~~L~~a~-rs~ll 86 (775)
T KOG0319|consen 25 VAWSS-NGQHLYTACGDRVIIIDVATGSIALPSGS-N------------ED---EDEITALALTPDEEVLVTAS-RSQLL 86 (775)
T ss_pred eeECC-CCCEEEEecCceEEEEEccCCceecccCC-c------------cc---hhhhheeeecCCccEEEEee-ccceE
Confidence 67777 55667777777666653222211111110 0 01 12588999999999988877 45789
Q ss_pred EEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEEEEeCCCc-eee----ecceeEEEeccCCC
Q 000733 132 HFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGGVNGPL-EDV----MDNVDAVEWSVKGK 206 (1324)
Q Consensus 132 ~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl~e~l-k~V----asgVScVcWSPKGK 206 (1324)
++|++... .-..+|..-+.++|.-++++|.. .++|....||.+.|||+..+. +.. .+-|+++++-|.=+
T Consensus 87 rv~~L~tg-----k~irswKa~He~Pvi~ma~~~~g-~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~ 160 (775)
T KOG0319|consen 87 RVWSLPTG-----KLIRSWKAIHEAPVITMAFDPTG-TLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWN 160 (775)
T ss_pred EEEEcccc-----hHhHhHhhccCCCeEEEEEcCCC-ceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccc
Confidence 99998864 33344555456789999999988 689999999999999998762 222 35678899998876
Q ss_pred E--EEEEecCc-eEEEccCcccccc
Q 000733 207 F--VAVAKKNV-LSILTSKLKERLP 228 (1324)
Q Consensus 207 Q--LVVGlaDG-IsQyTPDgeeKkv 228 (1324)
. |++|..|| +..| ++..++.
T Consensus 161 ~~lL~sg~~D~~v~vw--nl~~~~t 183 (775)
T KOG0319|consen 161 RWLLASGATDGTVRVW--NLNDKRT 183 (775)
T ss_pred hhheeecCCCceEEEE--EcccCch
Confidence 5 79999999 9999 6765554
No 141
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.29 E-value=0.1 Score=64.22 Aligned_cols=159 Identities=11% Similarity=0.134 Sum_probs=106.5
Q ss_pred CCCCCCCcceEeeCCcceEEEEEcCCc-eEEEEehHHHHHHhhcccCCcccccccceeeeecCCCCCeeEEEEecCCCEE
Q 000733 43 DLQNPPSLPLAVSQLSHQLIFAAHSSG-FCVARTNDVIDAAKEMKENGTRCCVQELSVVDVPFENENVDILSLSNDESTL 121 (1324)
Q Consensus 43 dLP~~~sSLLAVSN~K~GLvfAAgpdG-LvVarTsDLr~a~ksa~en~tv~~~~dl~vi~VPLp~s~VshLAFSsDEs~L 121 (1324)
++|-..+..+| |+-|+++|..+. +.|+......+ +..| ..+...|..|+..+..=++
T Consensus 55 ~~PvRa~kfia----RknWiv~GsDD~~IrVfnynt~ek---------V~~F---------eAH~DyIR~iavHPt~P~v 112 (794)
T KOG0276|consen 55 EVPVRAAKFIA----RKNWIVTGSDDMQIRVFNYNTGEK---------VKTF---------EAHSDYIRSIAVHPTLPYV 112 (794)
T ss_pred ccchhhheeee----ccceEEEecCCceEEEEeccccee---------eEEe---------eccccceeeeeecCCCCeE
Confidence 45555565555 677888888776 56664332221 1111 1122367777777766554
Q ss_pred EEEeecCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEEEEeCCCc-----eeeecce
Q 000733 122 AVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGGVNGPL-----EDVMDNV 196 (1324)
Q Consensus 122 AVcaesGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl~e~l-----k~VasgV 196 (1324)
..+. .+-.|.+|+-..-... .+-| -++...|-++++||..++.||-++-|+++.||+++... +-+..||
T Consensus 113 LtsS-DDm~iKlW~we~~wa~-~qtf----eGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGV 186 (794)
T KOG0276|consen 113 LTSS-DDMTIKLWDWENEWAC-EQTF----EGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGV 186 (794)
T ss_pred EecC-CccEEEEeeccCceee-eeEE----cCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCc
Confidence 4333 3567788875532210 1111 14568999999999999999999999999999998652 2234799
Q ss_pred eEEEeccCCC--EEEEEecCc-eEEEccCccccccccc
Q 000733 197 DAVEWSVKGK--FVAVAKKNV-LSILTSKLKERLPISL 231 (1324)
Q Consensus 197 ScVcWSPKGK--QLVVGlaDG-IsQyTPDgeeKkvIP~ 231 (1324)
-|||.=+-|. +|+.|..|- |.+| |.+-|.+|..
T Consensus 187 N~Vdyy~~gdkpylIsgaDD~tiKvW--DyQtk~CV~T 222 (794)
T KOG0276|consen 187 NCVDYYTGGDKPYLISGADDLTIKVW--DYQTKSCVQT 222 (794)
T ss_pred ceEEeccCCCcceEEecCCCceEEEe--ecchHHHHHH
Confidence 9999999885 889898888 9999 7777776654
No 142
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=96.28 E-value=0.094 Score=68.14 Aligned_cols=150 Identities=18% Similarity=0.202 Sum_probs=97.4
Q ss_pred CCeeEEEEecCCCEEEEEeecCCeEEEEEccccc--CCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEEEE
Q 000733 107 ENVDILSLSNDESTLAVSLYQSPHIHFFSVHSLL--NKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGG 184 (1324)
Q Consensus 107 s~VshLAFSsDEs~LAVcaesGg~L~VYDV~SLl--ng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vld 184 (1324)
..|..|++|+|..+|||..+ ..|++|-+...- -|+ ++....+..+..+.|.|..+..+.+++.+|.+.+++
T Consensus 305 ~~v~~l~Wn~ds~iLAv~~~--~~vqLWt~~NYHWYLKq-----ei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~ 377 (928)
T PF04762_consen 305 EKVIELAWNSDSEILAVWLE--DRVQLWTRSNYHWYLKQ-----EIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYD 377 (928)
T ss_pred ceeeEEEECCCCCEEEEEec--CCceEEEeeCCEEEEEE-----EEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEE
Confidence 47899999999999999883 459999876532 111 122222344556999999888899999888885554
Q ss_pred e----CCC---------ce-ee--------------------------ecceeEEEeccCCCEEEEEecCc-eEEEccCc
Q 000733 185 V----NGP---------LE-DV--------------------------MDNVDAVEWSVKGKFVAVAKKNV-LSILTSKL 223 (1324)
Q Consensus 185 l----~e~---------lk-~V--------------------------asgVScVcWSPKGKQLVVGlaDG-IsQyTPDg 223 (1324)
+ ... .. ++ ...|.+|+|++.+..+|+-+.|| |.+|..+.
T Consensus 378 ~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~ 457 (928)
T PF04762_consen 378 FAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDL 457 (928)
T ss_pred EEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecC
Confidence 4 110 00 00 16889999999999999999999 99998665
Q ss_pred ccccccccC-ccccCC------CCCCCCceeEEEEEEecCCeEEEEE
Q 000733 224 KERLPISLS-FKSWVG------DCDVNCSVKVDSIRWVRRDCIIIGC 263 (1324)
Q Consensus 224 eeKkvIP~P-f~S~I~------D~d~d~sV~V~SI~WLeNd~yLFg~ 263 (1324)
........| ....+. .........+..+.|++.+.+++..
T Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (928)
T PF04762_consen 458 KNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLS 504 (928)
T ss_pred CCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEEE
Confidence 443322222 100000 0011123468899999988544443
No 143
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=96.25 E-value=0.083 Score=58.77 Aligned_cols=75 Identities=12% Similarity=0.190 Sum_probs=57.2
Q ss_pred CcceeEEec-CCCcceEEEEecCCCCCeEEEEEeCCeEEEEEeCCCc--------------------eeeecceeEEEec
Q 000733 144 IKPSFSCSL-NGSTYVKDIRWRKKPENSFLALSNVGRLYRGGVNGPL--------------------EDVMDNVDAVEWS 202 (1324)
Q Consensus 144 t~P~~sisL-n~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl~e~l--------------------k~VasgVScVcWS 202 (1324)
...|.-+.+ +.+..||.+++-|+.. ++||-++..+++|+.+-.-. +.+...+-|+|||
T Consensus 20 k~~f~~i~~l~dsqairav~fhp~g~-lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws 98 (350)
T KOG0641|consen 20 KKHFEAINILEDSQAIRAVAFHPAGG-LYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWS 98 (350)
T ss_pred ccceEEEEEecchhheeeEEecCCCc-eEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEec
Confidence 344555544 6678899999999665 89999999999988652210 1124788999999
Q ss_pred cCCCEEEEEecCc-eEEE
Q 000733 203 VKGKFVAVAKKNV-LSIL 219 (1324)
Q Consensus 203 PKGKQLVVGlaDG-IsQy 219 (1324)
|.|..|+.|++|- |..+
T Consensus 99 ~~geliatgsndk~ik~l 116 (350)
T KOG0641|consen 99 PCGELIATGSNDKTIKVL 116 (350)
T ss_pred CccCeEEecCCCceEEEE
Confidence 9999999999998 7666
No 144
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=96.23 E-value=0.031 Score=67.60 Aligned_cols=135 Identities=13% Similarity=0.199 Sum_probs=94.0
Q ss_pred eeEEEEecCCCEEEEEeecCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEEEEeCCC
Q 000733 109 VDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGGVNGP 188 (1324)
Q Consensus 109 VshLAFSsDEs~LAVcaesGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl~e~ 188 (1324)
+..--.|+||.-|+.+.|. |.|.+|+-...+..... ..++.|++++|-|+.++ + +-.+.|.++|=-+...
T Consensus 107 ~~~gRW~~dGtgLlt~GED-G~iKiWSrsGMLRStl~-------Q~~~~v~c~~W~p~S~~-v-l~c~g~h~~IKpL~~n 176 (737)
T KOG1524|consen 107 ISSGRWSPDGAGLLTAGED-GVIKIWSRSGMLRSTVV-------QNEESIRCARWAPNSNS-I-VFCQGGHISIKPLAAN 176 (737)
T ss_pred hhhcccCCCCceeeeecCC-ceEEEEeccchHHHHHh-------hcCceeEEEEECCCCCc-e-EEecCCeEEEeecccc
Confidence 4444568999999888766 69999995544321111 12478999999998774 3 3345778888777766
Q ss_pred ceeee-----cceeEEEeccCCCEEEEEecCc-eEEEccCcccccccccCccccCCCCCCCCceeEEEEEEecCCeEEEE
Q 000733 189 LEDVM-----DNVDAVEWSVKGKFVAVAKKNV-LSILTSKLKERLPISLSFKSWVGDCDVNCSVKVDSIRWVRRDCIIIG 262 (1324)
Q Consensus 189 lk~Va-----sgVScVcWSPKGKQLVVGlaDG-IsQyTPDgeeKkvIP~Pf~S~I~D~d~d~sV~V~SI~WLeNd~yLFg 262 (1324)
.+.+. +=|.|++|++....|+.|+.|- ..+|..-|.. . |++. .....+.||.|-....|+++
T Consensus 177 ~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~--L----f~S~------~~ey~ITSva~npd~~~~v~ 244 (737)
T KOG1524|consen 177 SKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGAN--L----FTSA------AEEYAITSVAFNPEKDYLLW 244 (737)
T ss_pred cceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCcc--c----ccCC------hhccceeeeeeccccceeee
Confidence 55552 5678999999999999999998 9999543321 1 2221 12346999999766667766
Q ss_pred EEe
Q 000733 263 CFQ 265 (1324)
Q Consensus 263 ~vy 265 (1324)
...
T Consensus 245 S~n 247 (737)
T KOG1524|consen 245 SYN 247 (737)
T ss_pred eee
Confidence 653
No 145
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.23 E-value=0.0097 Score=72.83 Aligned_cols=63 Identities=24% Similarity=0.346 Sum_probs=51.7
Q ss_pred cceEEEEecCCCCCeEEEEEeCCeEEEEEeCCCceee-----eccee-EEEeccCCCEEEEEecCc-eEEEc
Q 000733 156 TYVKDIRWRKKPENSFLALSNVGRLYRGGVNGPLEDV-----MDNVD-AVEWSVKGKFVAVAKKNV-LSILT 220 (1324)
Q Consensus 156 t~VrdLaWNP~~aslLAVVSsDGsL~Vldl~e~lk~V-----asgVS-cVcWSPKGKQLVVGlaDG-IsQyT 220 (1324)
..|.-+.|||-.. ++|.++.+|.|.+..++.. ++. ..+|+ |.||-|+||.||+|.+|| |.+..
T Consensus 21 ~~i~~~ewnP~~d-LiA~~t~~gelli~R~n~q-Rlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~D 90 (665)
T KOG4640|consen 21 INIKRIEWNPKMD-LIATRTEKGELLIHRLNWQ-RLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHD 90 (665)
T ss_pred cceEEEEEcCccc-hhheeccCCcEEEEEeccc-eeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEE
Confidence 4578899999654 8999999999988888732 221 25666 999999999999999999 98883
No 146
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=96.23 E-value=0.027 Score=71.98 Aligned_cols=138 Identities=12% Similarity=0.093 Sum_probs=96.6
Q ss_pred CeeEEEEecCCCEEEEEeec-CCeEEEEEcccccCC----C---CcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCe
Q 000733 108 NVDILSLSNDESTLAVSLYQ-SPHIHFFSVHSLLNK----E---IKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGR 179 (1324)
Q Consensus 108 ~VshLAFSsDEs~LAVcaes-Gg~L~VYDV~SLlng----~---t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGs 179 (1324)
.|..|.+++|+..+|.+..- ++.+.+|+...+... + ..+++.+. .+.+.|.++.|+|+.. .||.-+.|+-
T Consensus 15 ~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~-~h~~sv~CVR~S~dG~-~lAsGSDD~~ 92 (942)
T KOG0973|consen 15 SIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMD-DHDGSVNCVRFSPDGS-YLASGSDDRL 92 (942)
T ss_pred eEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeec-cccCceeEEEECCCCC-eEeeccCcce
Confidence 47788999999988777621 344559999988843 1 22344433 3457899999999765 7999999999
Q ss_pred EEEEEeCC-----------Cce------ee------ecceeEEEeccCCCEEEEEecCc-eEEEcc-CcccccccccCcc
Q 000733 180 LYRGGVNG-----------PLE------DV------MDNVDAVEWSVKGKFVAVAKKNV-LSILTS-KLKERLPISLSFK 234 (1324)
Q Consensus 180 L~Vldl~e-----------~lk------~V------asgVScVcWSPKGKQLVVGlaDG-IsQyTP-DgeeKkvIP~Pf~ 234 (1324)
+.||.... +.. .+ ...|.-|||||+|..||.+..|. |.+|.- .++..+++.
T Consensus 93 v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~---- 168 (942)
T KOG0973|consen 93 VMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLR---- 168 (942)
T ss_pred EEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeee----
Confidence 99998762 001 11 26889999999999999999999 999942 232222211
Q ss_pred ccCCCCCCCCceeEEEEEEecCCeE
Q 000733 235 SWVGDCDVNCSVKVDSIRWVRRDCI 259 (1324)
Q Consensus 235 S~I~D~d~d~sV~V~SI~WLeNd~y 259 (1324)
+..-.|-+|.|---..|
T Consensus 169 --------~H~s~VKGvs~DP~Gky 185 (942)
T KOG0973|consen 169 --------GHQSLVKGVSWDPIGKY 185 (942)
T ss_pred --------cccccccceEECCccCe
Confidence 22346889999655434
No 147
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=96.23 E-value=0.14 Score=59.30 Aligned_cols=123 Identities=13% Similarity=0.094 Sum_probs=83.9
Q ss_pred CCCCCeeEEEEecCCCEEEEEeecCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEEE
Q 000733 104 FENENVDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRG 183 (1324)
Q Consensus 104 Lp~s~VshLAFSsDEs~LAVcaesGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vl 183 (1324)
.+...|+.|+||+||.+||.|.. ++.|++|+++.|.++.-+- .++.++- ..-..+++.|+....+..|-+..+|+||
T Consensus 84 gH~~~vt~~~FsSdGK~lat~~~-Dr~Ir~w~~~DF~~~eHr~-~R~nve~-dhpT~V~FapDc~s~vv~~~~g~~l~vy 160 (420)
T KOG2096|consen 84 GHKKEVTDVAFSSDGKKLATISG-DRSIRLWDVRDFENKEHRC-IRQNVEY-DHPTRVVFAPDCKSVVVSVKRGNKLCVY 160 (420)
T ss_pred ccCCceeeeEEcCCCceeEEEeC-CceEEEEecchhhhhhhhH-hhccccC-CCceEEEECCCcceEEEEEccCCEEEEE
Confidence 33558999999999999999884 4699999999998863322 2233332 2456788999888777788888899999
Q ss_pred EeCC---C-cee--e-----------ecceeEEEeccCCCEEEEEecCc-eEEEccCccccccc
Q 000733 184 GVNG---P-LED--V-----------MDNVDAVEWSVKGKFVAVAKKNV-LSILTSKLKERLPI 229 (1324)
Q Consensus 184 dl~e---~-lk~--V-----------asgVScVcWSPKGKQLVVGlaDG-IsQyTPDgeeKkvI 229 (1324)
.+.. + ..+ + ...+-.+----.||+|+.+..|. |.+|.=.|+.-.+|
T Consensus 161 k~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lkGq~L~~i 224 (420)
T KOG2096|consen 161 KLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLKGQLLQSI 224 (420)
T ss_pred EeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecCCceeeee
Confidence 8732 1 111 1 12333444446788888888887 88885444443344
No 148
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=96.21 E-value=0.047 Score=61.91 Aligned_cols=106 Identities=13% Similarity=0.131 Sum_probs=79.3
Q ss_pred CCeeEEEEecCCCEEEEEeecCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEe-----CCeEE
Q 000733 107 ENVDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSN-----VGRLY 181 (1324)
Q Consensus 107 s~VshLAFSsDEs~LAVcaesGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSs-----DGsL~ 181 (1324)
.-|.++...+|-..|+.... +-.+.+|||.+- +-++.|..+ ..|+-+-++++.+ .+++++. -+.+.
T Consensus 53 GavW~~Did~~s~~liTGSA-D~t~kLWDv~tG-----k~la~~k~~--~~Vk~~~F~~~gn-~~l~~tD~~mg~~~~v~ 123 (327)
T KOG0643|consen 53 GAVWCCDIDWDSKHLITGSA-DQTAKLWDVETG-----KQLATWKTN--SPVKRVDFSFGGN-LILASTDKQMGYTCFVS 123 (327)
T ss_pred ceEEEEEecCCcceeeeccc-cceeEEEEcCCC-----cEEEEeecC--CeeEEEeeccCCc-EEEEEehhhcCcceEEE
Confidence 36888888999988877653 357899999863 346667765 6899999999654 5555553 45678
Q ss_pred EEEeCCC---------ceee---ecceeEEEeccCCCEEEEEecCc-eEEEcc
Q 000733 182 RGGVNGP---------LEDV---MDNVDAVEWSVKGKFVAVAKKNV-LSILTS 221 (1324)
Q Consensus 182 Vldl~e~---------lk~V---asgVScVcWSPKGKQLVVGlaDG-IsQyTP 221 (1324)
++++... ...+ .+.++.+-|+|.|+.|++|..|| |.+|.-
T Consensus 124 ~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da 176 (327)
T KOG0643|consen 124 VFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDA 176 (327)
T ss_pred EEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEc
Confidence 8888622 1111 37889999999999999999999 999953
No 149
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=96.17 E-value=0.025 Score=65.00 Aligned_cols=106 Identities=13% Similarity=0.226 Sum_probs=81.9
Q ss_pred CeeEEEEecCCCEEEEEeecCCeEEEEEcccccCC-CCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEEEEeC
Q 000733 108 NVDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNK-EIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGGVN 186 (1324)
Q Consensus 108 ~VshLAFSsDEs~LAVcaesGg~L~VYDV~SLlng-~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl~ 186 (1324)
.|..|+|.+.|.+|+|.... +.+++|||.+..-- ..+|-- .+...|.++.+|++.. +++..+-||.+.+||--
T Consensus 218 ~vrsiSfHPsGefllvgTdH-p~~rlYdv~T~QcfvsanPd~----qht~ai~~V~Ys~t~~-lYvTaSkDG~IklwDGV 291 (430)
T KOG0640|consen 218 PVRSISFHPSGEFLLVGTDH-PTLRLYDVNTYQCFVSANPDD----QHTGAITQVRYSSTGS-LYVTASKDGAIKLWDGV 291 (430)
T ss_pred eeeeEeecCCCceEEEecCC-CceeEEeccceeEeeecCccc----ccccceeEEEecCCcc-EEEEeccCCcEEeeccc
Confidence 58899999999999998755 79999999976421 222221 1336799999999654 89999999999999853
Q ss_pred CC--ceee-----ecceeEEEeccCCCEEEEEecCc-eEEE
Q 000733 187 GP--LEDV-----MDNVDAVEWSVKGKFVAVAKKNV-LSIL 219 (1324)
Q Consensus 187 e~--lk~V-----asgVScVcWSPKGKQLVVGlaDG-IsQy 219 (1324)
.+ +..+ ...|.++-++.+||+|...++|. +..|
T Consensus 292 S~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLW 332 (430)
T KOG0640|consen 292 SNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLW 332 (430)
T ss_pred cHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeee
Confidence 22 2212 36889999999999999988888 8888
No 150
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.17 E-value=0.047 Score=65.59 Aligned_cols=143 Identities=17% Similarity=0.145 Sum_probs=70.1
Q ss_pred CeeEEEEecCCCEEEEEeecCCeEEEEEcccccCC-----------CCcceeEEecCCCcce-EEEEecCC------C--
Q 000733 108 NVDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNK-----------EIKPSFSCSLNGSTYV-KDIRWRKK------P-- 167 (1324)
Q Consensus 108 ~VshLAFSsDEs~LAVcaesGg~L~VYDV~SLlng-----------~t~P~~sisLn~st~V-rdLaWNP~------~-- 167 (1324)
.+..|.+++.|.+++||. +|...+|....+-++ ...-++.+..+....| +.+.+... .
T Consensus 34 ~p~~ls~npngr~v~V~g--~geY~iyt~~~~r~k~~G~g~~~vw~~~n~yAv~~~~~~I~I~kn~~~~~~k~i~~~~~~ 111 (443)
T PF04053_consen 34 YPQSLSHNPNGRFVLVCG--DGEYEIYTALAWRNKAFGSGLSFVWSSRNRYAVLESSSTIKIYKNFKNEVVKSIKLPFSV 111 (443)
T ss_dssp --SEEEE-TTSSEEEEEE--TTEEEEEETTTTEEEEEEE-SEEEE-TSSEEEEE-TTS-EEEEETTEE-TT-----SS-E
T ss_pred CCeeEEECCCCCEEEEEc--CCEEEEEEccCCcccccCceeEEEEecCccEEEEECCCeEEEEEcCccccceEEcCCccc
Confidence 489999999999999999 899999985544332 1111221111111222 23333220 0
Q ss_pred ----CCeEEEEEeCCeEEEEEeCCCceeee----cceeEEEeccCCCEEEEEecCceEEEccCcccccccccCccccCCC
Q 000733 168 ----ENSFLALSNVGRLYRGGVNGPLEDVM----DNVDAVEWSVKGKFVAVAKKNVLSILTSKLKERLPISLSFKSWVGD 239 (1324)
Q Consensus 168 ----aslLAVVSsDGsL~Vldl~e~lk~Va----sgVScVcWSPKGKQLVVGlaDGIsQyTPDgeeKkvIP~Pf~S~I~D 239 (1324)
...+..+..++.|.++|.... +.+. .+|..|-||++|..+|..+++.+.+++-+.+....++-- .++|
T Consensus 112 ~~If~G~LL~~~~~~~i~~yDw~~~-~~i~~i~v~~vk~V~Ws~~g~~val~t~~~i~il~~~~~~~~~~~~~---g~e~ 187 (443)
T PF04053_consen 112 EKIFGGNLLGVKSSDFICFYDWETG-KLIRRIDVSAVKYVIWSDDGELVALVTKDSIYILKYNLEAVAAIPEE---GVED 187 (443)
T ss_dssp EEEE-SSSEEEEETTEEEEE-TTT---EEEEESS-E-EEEEE-TTSSEEEEE-S-SEEEEEE-HHHHHHBTTT---B-GG
T ss_pred ceEEcCcEEEEECCCCEEEEEhhHc-ceeeEEecCCCcEEEEECCCCEEEEEeCCeEEEEEecchhccccccc---Cchh
Confidence 023344445556677776544 2221 458999999999999999999966665444311111100 0000
Q ss_pred ---CCCCCceeEEEEEEecC
Q 000733 240 ---CDVNCSVKVDSIRWVRR 256 (1324)
Q Consensus 240 ---~d~d~sV~V~SI~WLeN 256 (1324)
...+-..+|.+..|.++
T Consensus 188 ~f~~~~E~~~~IkSg~W~~d 207 (443)
T PF04053_consen 188 AFELIHEISERIKSGCWVED 207 (443)
T ss_dssp GEEEEEEE-S--SEEEEETT
T ss_pred ceEEEEEecceeEEEEEEcC
Confidence 00111357899999988
No 151
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=96.16 E-value=0.034 Score=68.73 Aligned_cols=110 Identities=16% Similarity=0.170 Sum_probs=80.4
Q ss_pred CeeEEEEecCCCEEEEEeecCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEEEEeCC
Q 000733 108 NVDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGGVNG 187 (1324)
Q Consensus 108 ~VshLAFSsDEs~LAVcaesGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl~e 187 (1324)
-|++|+||+||.+|+.+.. +-.+.+|++..=.....+ |...+ .+...|=+--|+|... .||.++.|.++.||...+
T Consensus 574 TVT~l~FSpdg~~LLsvsR-DRt~sl~~~~~~~~~e~~-fa~~k-~HtRIIWdcsW~pde~-~FaTaSRDK~VkVW~~~~ 649 (764)
T KOG1063|consen 574 TVTRLAFSPDGRYLLSVSR-DRTVSLYEVQEDIKDEFR-FACLK-AHTRIIWDCSWSPDEK-YFATASRDKKVKVWEEPD 649 (764)
T ss_pred EEEEEEECCCCcEEEEeec-CceEEeeeeecccchhhh-hcccc-ccceEEEEcccCcccc-eeEEecCCceEEEEeccC
Confidence 4999999999999866553 568889987543332222 22222 3446778889999654 599999999999998865
Q ss_pred C----ce-----eeecceeEEEeccC-----CCEEEEEecCc-eEEEcc
Q 000733 188 P----LE-----DVMDNVDAVEWSVK-----GKFVAVAKKNV-LSILTS 221 (1324)
Q Consensus 188 ~----lk-----~VasgVScVcWSPK-----GKQLVVGlaDG-IsQyTP 221 (1324)
. +. .+...||+++|-|. |.-|++|+..| |..|+-
T Consensus 650 ~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~ 698 (764)
T KOG1063|consen 650 LRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRR 698 (764)
T ss_pred chhhhhhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEec
Confidence 4 11 12378999999975 55789999999 999973
No 152
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=96.15 E-value=0.037 Score=63.26 Aligned_cols=106 Identities=15% Similarity=0.157 Sum_probs=83.0
Q ss_pred CCeeEEEEec-CCCEEEEEeecCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEEEEe
Q 000733 107 ENVDILSLSN-DESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGGV 185 (1324)
Q Consensus 107 s~VshLAFSs-DEs~LAVcaesGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl 185 (1324)
..|-.|++++ |.++.+.+.- +..-.+||+++-.- .+.|+ .+..-|+.+.+-|+.. .||..+.||+.+++|+
T Consensus 187 gDV~slsl~p~~~ntFvSg~c-D~~aklWD~R~~~c--~qtF~----ghesDINsv~ffP~G~-afatGSDD~tcRlyDl 258 (343)
T KOG0286|consen 187 GDVMSLSLSPSDGNTFVSGGC-DKSAKLWDVRSGQC--VQTFE----GHESDINSVRFFPSGD-AFATGSDDATCRLYDL 258 (343)
T ss_pred ccEEEEecCCCCCCeEEeccc-ccceeeeeccCcce--eEeec----ccccccceEEEccCCC-eeeecCCCceeEEEee
Confidence 3677888988 8887776653 46789999998533 33333 2346799999999655 6999999999999999
Q ss_pred CCCce--ee-----ecceeEEEeccCCCEEEEEecCc-eEEEc
Q 000733 186 NGPLE--DV-----MDNVDAVEWSVKGKFVAVAKKNV-LSILT 220 (1324)
Q Consensus 186 ~e~lk--~V-----asgVScVcWSPKGKQLVVGlaDG-IsQyT 220 (1324)
....+ ++ -.+|++|++|.-|+.|.+|..|. +..|.
T Consensus 259 RaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWD 301 (343)
T KOG0286|consen 259 RADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWD 301 (343)
T ss_pred cCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEee
Confidence 75322 22 37999999999999999999998 99994
No 153
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=96.07 E-value=0.022 Score=69.66 Aligned_cols=139 Identities=17% Similarity=0.303 Sum_probs=94.7
Q ss_pred CCCeeEEEEec--CCCEEEEEeecCCeEEEEEcccccCCCCcceeEEecCC-CcceEEEEecCCCCCeEEEEEeCCeEEE
Q 000733 106 NENVDILSLSN--DESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNG-STYVKDIRWRKKPENSFLALSNVGRLYR 182 (1324)
Q Consensus 106 ~s~VshLAFSs--DEs~LAVcaesGg~L~VYDV~SLlng~t~P~~sisLn~-st~VrdLaWNP~~aslLAVVSsDGsL~V 182 (1324)
...|..+.|++ |++ ||.|.. +--|.+|.+.--..+.. ..-.+-+++ ...|-.|.+-|+.. .+.+....|+++|
T Consensus 79 ~d~VtDl~FspF~D~L-LAT~S~-D~~VKiW~lp~g~~q~L-Sape~~~g~~~~~vE~l~fHpTaD-gil~s~a~g~v~i 154 (1012)
T KOG1445|consen 79 GDQVTDLGFSPFADEL-LATCSR-DEPVKIWKLPRGHSQKL-SAPEIDVGGGNVIVECLRFHPTAD-GILASGAHGSVYI 154 (1012)
T ss_pred cceeeccCccccchhh-hhcccC-CCeeEEEecCCCccccc-CCcceeecCCceEEEEeecccCcC-ceEEeccCceEEE
Confidence 44788888986 554 788774 45799998872221111 222344433 37788899999776 4777888999999
Q ss_pred EEeCCCcee-----eecceeEEEeccCCCEEEEEecCc-eEEEccCcccccccccCccccCCCCCCCCceeEEEEEEecC
Q 000733 183 GGVNGPLED-----VMDNVDAVEWSVKGKFVAVAKKNV-LSILTSKLKERLPISLSFKSWVGDCDVNCSVKVDSIRWVRR 256 (1324)
Q Consensus 183 ldl~e~lk~-----VasgVScVcWSPKGKQLVVGlaDG-IsQyTPDgeeKkvIP~Pf~S~I~D~d~d~sV~V~SI~WLeN 256 (1324)
||+..+... +.+-|-++.||-+||.|++.++|- |.+|.|--. +.|.. - -+.-++.+=.-+.|+.|
T Consensus 155 ~D~stqk~~~el~~h~d~vQSa~WseDG~llatscKdkqirifDPRa~-----~~piQ-~---te~H~~~rdsRv~w~Gn 225 (1012)
T KOG1445|consen 155 TDISTQKTAVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRAS-----MEPIQ-T---TEGHGGMRDSRVLWAGN 225 (1012)
T ss_pred EEcccCceeecccCCchhhhccccccCCceEeeecCCcceEEeCCccC-----CCccc-c---ccccccchhheeeeccc
Confidence 999765333 247888999999999999999998 999987321 11210 0 01123346678899998
Q ss_pred C
Q 000733 257 D 257 (1324)
Q Consensus 257 d 257 (1324)
-
T Consensus 226 ~ 226 (1012)
T KOG1445|consen 226 W 226 (1012)
T ss_pred h
Confidence 3
No 154
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=96.05 E-value=0.038 Score=65.87 Aligned_cols=137 Identities=15% Similarity=0.204 Sum_probs=98.4
Q ss_pred CCeeEEEEecCCCEEEEEeecCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEEEEeC
Q 000733 107 ENVDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGGVN 186 (1324)
Q Consensus 107 s~VshLAFSsDEs~LAVcaesGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl~ 186 (1324)
..+..||+|||+.|||... .|..|+||+++++-.-+. ++ .+-..|..|++.-..+. +..++.|+++.||++.
T Consensus 203 keil~~avS~Dgkylatgg-~d~~v~Iw~~~t~ehv~~-----~~-ghr~~V~~L~fr~gt~~-lys~s~Drsvkvw~~~ 274 (479)
T KOG0299|consen 203 KEILTLAVSSDGKYLATGG-RDRHVQIWDCDTLEHVKV-----FK-GHRGAVSSLAFRKGTSE-LYSASADRSVKVWSID 274 (479)
T ss_pred ceeEEEEEcCCCcEEEecC-CCceEEEecCcccchhhc-----cc-ccccceeeeeeecCccc-eeeeecCCceEEEehh
Confidence 3688999999999988755 567899999998754222 11 22357888999877665 5556679999999996
Q ss_pred CC--ce-ee--ecceeEEEeccCCCEEEEEecCc-eEEEccCcccccccccCccccCCCCCCCCceeEEEEEEecCCeEE
Q 000733 187 GP--LE-DV--MDNVDAVEWSVKGKFVAVAKKNV-LSILTSKLKERLPISLSFKSWVGDCDVNCSVKVDSIRWVRRDCII 260 (1324)
Q Consensus 187 e~--lk-~V--asgVScVcWSPKGKQLVVGlaDG-IsQyTPDgeeKkvIP~Pf~S~I~D~d~d~sV~V~SI~WLeNd~yL 260 (1324)
.- ++ ++ .++|..++-.-+++-+.||..|. +..|+- -++.+.|=.+. ...++.++.+..+.|+
T Consensus 275 ~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi-~eesqlifrg~-----------~~sidcv~~In~~Hfv 342 (479)
T KOG0299|consen 275 QLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKI-PEESQLIFRGG-----------EGSIDCVAFINDEHFV 342 (479)
T ss_pred HhHHHHHHhCCccceeeechhcccceEEeccccceeEEEec-cccceeeeeCC-----------CCCeeeEEEeccccee
Confidence 53 12 22 37899999999999999999999 999974 23445554442 1246777778776676
Q ss_pred EEE
Q 000733 261 IGC 263 (1324)
Q Consensus 261 Fg~ 263 (1324)
.|.
T Consensus 343 sGS 345 (479)
T KOG0299|consen 343 SGS 345 (479)
T ss_pred ecc
Confidence 553
No 155
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=95.98 E-value=0.075 Score=62.13 Aligned_cols=101 Identities=12% Similarity=0.153 Sum_probs=72.8
Q ss_pred eeEEEEecCCCEEEEEeecCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEEEEeCCC
Q 000733 109 VDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGGVNGP 188 (1324)
Q Consensus 109 VshLAFSsDEs~LAVcaesGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl~e~ 188 (1324)
|..++++++= -|++|..-+|.|.+||.++.. .+. ...+...|.+|+|-+ .+.++.+..||.++.||...+
T Consensus 289 ve~~~~ss~l-pL~A~G~vdG~i~iyD~a~~~---~R~----~c~he~~V~~l~w~~--t~~l~t~c~~g~v~~wDaRtG 358 (399)
T KOG0296|consen 289 VESIPSSSKL-PLAACGSVDGTIAIYDLAAST---LRH----ICEHEDGVTKLKWLN--TDYLLTACANGKVRQWDARTG 358 (399)
T ss_pred hhhccccccc-chhhcccccceEEEEecccch---hhe----eccCCCceEEEEEcC--cchheeeccCceEEeeecccc
Confidence 3344444443 367776567899999988653 222 122335699999988 346777778999999999755
Q ss_pred -ceee----ecceeEEEeccCCCEEEEEecCc-eEEE
Q 000733 189 -LEDV----MDNVDAVEWSVKGKFVAVAKKNV-LSIL 219 (1324)
Q Consensus 189 -lk~V----asgVScVcWSPKGKQLVVGlaDG-IsQy 219 (1324)
.+.. ..+|.|++.||+++.||.++.|+ ..+|
T Consensus 359 ~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF 395 (399)
T KOG0296|consen 359 QLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVF 395 (399)
T ss_pred ceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEE
Confidence 3332 36999999999999999999999 6666
No 156
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=95.94 E-value=0.12 Score=53.83 Aligned_cols=110 Identities=16% Similarity=0.147 Sum_probs=76.4
Q ss_pred CCCeeEEEEecCCCEEEEEeecCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEEEEe
Q 000733 106 NENVDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGGV 185 (1324)
Q Consensus 106 ~s~VshLAFSsDEs~LAVcaesGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl 185 (1324)
...|..++|++++.+++++...++.+.+|++.. ..+...+.. +...|..++|+|.....++-+..||.+.+||.
T Consensus 155 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~ 228 (466)
T COG2319 155 SESVTSLAFSPDGKLLASGSSLDGTIKLWDLRT-----GKPLSTLAG-HTDPVSSLAFSPDGGLLIASGSSDGTIRLWDL 228 (466)
T ss_pred cccEEEEEECCCCCEEEecCCCCCceEEEEcCC-----CceEEeecc-CCCceEEEEEcCCcceEEEEecCCCcEEEEEC
Confidence 347889999999997777753368999999886 112222221 34679999999766523333478999999987
Q ss_pred CCCcee---ee---cceeEEEeccCCCEEEEEecCc-eEEEccC
Q 000733 186 NGPLED---VM---DNVDAVEWSVKGKFVAVAKKNV-LSILTSK 222 (1324)
Q Consensus 186 ~e~lk~---Va---sgVScVcWSPKGKQLVVGlaDG-IsQyTPD 222 (1324)
...... +. ..+ ..+|+|+|+.++.+..|+ +..|.-.
T Consensus 229 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~ 271 (466)
T COG2319 229 STGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLR 271 (466)
T ss_pred CCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeec
Confidence 633111 11 232 228999999999999999 9999543
No 157
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=95.93 E-value=0.044 Score=67.46 Aligned_cols=123 Identities=11% Similarity=0.021 Sum_probs=89.7
Q ss_pred CCCeeEEEEecCCCEEEEEeecCCeEEEEEcccccCC-----CCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeE
Q 000733 106 NENVDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNK-----EIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRL 180 (1324)
Q Consensus 106 ~s~VshLAFSsDEs~LAVcaesGg~L~VYDV~SLlng-----~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL 180 (1324)
...|.+||.-+....|+|.+.=+..|.+||+.++... +..+..+...++-..|-.|+=||+. ..++--..++.|
T Consensus 117 ~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~-t~ivsGgtek~l 195 (735)
T KOG0308|consen 117 KDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTG-TIIVSGGTEKDL 195 (735)
T ss_pred cchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcc-eEEEecCcccce
Confidence 4578899996666667777755679999999977431 2222222222444678999999976 355556788999
Q ss_pred EEEEeCCCcee-----eecceeEEEeccCCCEEEEEecCc-eEEEccCccccccccc
Q 000733 181 YRGGVNGPLED-----VMDNVDAVEWSVKGKFVAVAKKNV-LSILTSKLKERLPISL 231 (1324)
Q Consensus 181 ~Vldl~e~lk~-----VasgVScVcWSPKGKQLVVGlaDG-IsQyTPDgeeKkvIP~ 231 (1324)
.+||-....+. +.++|.++--+.+|.+++.|+.|| |..| ++...+.+..
T Consensus 196 r~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlW--dLgqQrCl~T 250 (735)
T KOG0308|consen 196 RLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLW--DLGQQRCLAT 250 (735)
T ss_pred EEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEee--eccccceeee
Confidence 99998654222 248999999999999999999999 9999 6666666543
No 158
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=95.91 E-value=0.26 Score=56.70 Aligned_cols=146 Identities=8% Similarity=0.076 Sum_probs=102.5
Q ss_pred eeecCCCCCeeEEEEecCCCEEEEEeecCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCe
Q 000733 100 VDVPFENENVDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGR 179 (1324)
Q Consensus 100 i~VPLp~s~VshLAFSsDEs~LAVcaesGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGs 179 (1324)
..++.+...+++.-|-.|+.+|-... +..+.+||+.+-.. +.-|. ++..-|-.|...|...+.|+-...|+.
T Consensus 139 r~l~gHtgylScC~f~dD~~ilT~SG--D~TCalWDie~g~~--~~~f~----GH~gDV~slsl~p~~~ntFvSg~cD~~ 210 (343)
T KOG0286|consen 139 RELAGHTGYLSCCRFLDDNHILTGSG--DMTCALWDIETGQQ--TQVFH----GHTGDVMSLSLSPSDGNTFVSGGCDKS 210 (343)
T ss_pred eeecCccceeEEEEEcCCCceEecCC--CceEEEEEcccceE--EEEec----CCcccEEEEecCCCCCCeEEecccccc
Confidence 34555555788888888888664444 67899999987532 33332 455678888888877789999999999
Q ss_pred EEEEEeCCCc---ee--eecceeEEEeccCCCEEEEEecCc-eEEEccCcccccccccC-ccccCCCCCCCCceeEEEEE
Q 000733 180 LYRGGVNGPL---ED--VMDNVDAVEWSVKGKFVAVAKKNV-LSILTSKLKERLPISLS-FKSWVGDCDVNCSVKVDSIR 252 (1324)
Q Consensus 180 L~Vldl~e~l---k~--VasgVScVcWSPKGKQLVVGlaDG-IsQyTPDgeeKkvIP~P-f~S~I~D~d~d~sV~V~SI~ 252 (1324)
-++||+.++. .+ +...|.+|++-|.|--+|.|..|| +..| |+..-..|..= +. ....-|.+|.
T Consensus 211 aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRly--DlRaD~~~a~ys~~--------~~~~gitSv~ 280 (343)
T KOG0286|consen 211 AKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLY--DLRADQELAVYSHD--------SIICGITSVA 280 (343)
T ss_pred eeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEE--eecCCcEEeeeccC--------cccCCceeEE
Confidence 9999998762 11 237899999999999999999999 9999 44333333221 11 1123467777
Q ss_pred EecCCeEEEEE
Q 000733 253 WVRRDCIIIGC 263 (1324)
Q Consensus 253 WLeNd~yLFg~ 263 (1324)
.-.-.-++|+.
T Consensus 281 FS~SGRlLfag 291 (343)
T KOG0286|consen 281 FSKSGRLLFAG 291 (343)
T ss_pred EcccccEEEee
Confidence 75555567765
No 159
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=95.88 E-value=0.088 Score=61.61 Aligned_cols=115 Identities=13% Similarity=0.203 Sum_probs=71.4
Q ss_pred eeecCCCCCeeEEEEecCCCEEEEEeecCCeEEEEEcccccCCCCcceeEEecC------CCcceEEEEecCCCCCeEEE
Q 000733 100 VDVPFENENVDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLN------GSTYVKDIRWRKKPENSFLA 173 (1324)
Q Consensus 100 i~VPLp~s~VshLAFSsDEs~LAVcaesGg~L~VYDV~SLlng~t~P~~sisLn------~st~VrdLaWNP~~aslLAV 173 (1324)
..++.. ..+..+++|.||.+|+|+....+.|.++|.++| +++..+.+. ....+..+.-.|.....++.
T Consensus 72 ~~i~~G-~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tl-----e~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~ 145 (369)
T PF02239_consen 72 ATIKVG-GNPRGIAVSPDGKYVYVANYEPGTVSVIDAETL-----EPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVN 145 (369)
T ss_dssp EEEE-S-SEEEEEEE--TTTEEEEEEEETTEEEEEETTT-------EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEE
T ss_pred EEEecC-CCcceEEEcCCCCEEEEEecCCCceeEeccccc-----cceeecccccccccccCCCceeEEecCCCCEEEEE
Confidence 345544 468999999999999988877789999998875 344444442 22467788877865543344
Q ss_pred EEeCCeEEEEEeCCCc----eee--ecceeEEEeccCCCEEEEEecCc--eEEEc
Q 000733 174 LSNVGRLYRGGVNGPL----EDV--MDNVDAVEWSVKGKFVAVAKKNV--LSILT 220 (1324)
Q Consensus 174 VSsDGsL~Vldl~e~l----k~V--asgVScVcWSPKGKQLVVGlaDG--IsQyT 220 (1324)
+-..|.+.+.|+.+.. +.+ ....--+.|+|+|+++.++.... |..+.
T Consensus 146 lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD 200 (369)
T PF02239_consen 146 LKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVID 200 (369)
T ss_dssp ETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEE
T ss_pred EccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEe
Confidence 4556999999986531 111 23344589999999987775554 77774
No 160
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=95.87 E-value=0.057 Score=64.42 Aligned_cols=100 Identities=18% Similarity=0.219 Sum_probs=73.8
Q ss_pred CCeeEEEEecCCCEEEEEeecCCeEEEEEcccccCCCCcceeEEecCCCc-----------ceEEEEecCCCCCeEEEEE
Q 000733 107 ENVDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGST-----------YVKDIRWRKKPENSFLALS 175 (1324)
Q Consensus 107 s~VshLAFSsDEs~LAVcaesGg~L~VYDV~SLlng~t~P~~sisLn~st-----------~VrdLaWNP~~aslLAVVS 175 (1324)
+.+.++||=+|+-++.=.+ .|.|++|++.. ..|+|..++.++. =|..|+-.|.. +++|.-+
T Consensus 328 ~sidcv~~In~~HfvsGSd--nG~IaLWs~~K-----Kkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~s-dL~asGS 399 (479)
T KOG0299|consen 328 GSIDCVAFINDEHFVSGSD--NGSIALWSLLK-----KKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGS-DLLASGS 399 (479)
T ss_pred CCeeeEEEecccceeeccC--CceEEEeeecc-----cCceeEeeccccccCCccccccccceeeeEecccC-ceEEecC
Confidence 3678888888887554444 78999998653 6788877663321 35566776744 5888889
Q ss_pred eCCeEEEEEeCCCc---eee-----ecceeEEEeccCCCEEEEEecC
Q 000733 176 NVGRLYRGGVNGPL---EDV-----MDNVDAVEWSVKGKFVAVAKKN 214 (1324)
Q Consensus 176 sDGsL~Vldl~e~l---k~V-----asgVScVcWSPKGKQLVVGlaD 214 (1324)
.+|.|++|.+.+++ ..+ .+-|.++||++.||.|++|..-
T Consensus 400 ~~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk~ivagiGk 446 (479)
T KOG0299|consen 400 WSGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSGKRIVAGIGK 446 (479)
T ss_pred CCCceEEEEecCCccccceeeecccccEEEEEEEccCCCEEEEeccc
Confidence 99999999998773 222 3788999999999999998544
No 161
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=95.86 E-value=0.082 Score=65.14 Aligned_cols=135 Identities=15% Similarity=0.082 Sum_probs=85.0
Q ss_pred EEEecCCCEEEEEeecCCeEEEEEcccccC-CCCcceeEEecCC----CcceEEEEecCCCCCeEEEEEeCCeEEEEEeC
Q 000733 112 LSLSNDESTLAVSLYQSPHIHFFSVHSLLN-KEIKPSFSCSLNG----STYVKDIRWRKKPENSFLALSNVGRLYRGGVN 186 (1324)
Q Consensus 112 LAFSsDEs~LAVcaesGg~L~VYDV~SLln-g~t~P~~sisLn~----st~VrdLaWNP~~aslLAVVSsDGsL~Vldl~ 186 (1324)
+-|.-||.+||.|...++.|.|||++.... ...+|.....+.- +..+..|.-.-...-+||-|+ |++||.||+.
T Consensus 223 vv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCt-D~sIy~ynm~ 301 (720)
T KOG0321|consen 223 VVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCT-DNSIYFYNMR 301 (720)
T ss_pred EEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEec-CCcEEEEecc
Confidence 556689999999998778999999997653 2444444333311 123444444333345889999 9999999985
Q ss_pred CC-ceee--------ecceeEEEeccCCCEEEEEecCc-eEEEccCcccccccccCccccCCCCCCCCceeEEEEEEecC
Q 000733 187 GP-LEDV--------MDNVDAVEWSVKGKFVAVAKKNV-LSILTSKLKERLPISLSFKSWVGDCDVNCSVKVDSIRWVRR 256 (1324)
Q Consensus 187 e~-lk~V--------asgVScVcWSPKGKQLVVGlaDG-IsQyTPDgeeKkvIP~Pf~S~I~D~d~d~sV~V~SI~WLeN 256 (1324)
.- ...+ ...-..-|-||+|++|+.|+.|+ ..+|--+ .--.|+. ...+..++|..|+|+.-
T Consensus 302 s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs-----~~e~~~~-----~l~Ght~eVt~V~w~pS 371 (720)
T KOG0321|consen 302 SLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVS-----SPEAPPA-----LLLGHTREVTTVRWLPS 371 (720)
T ss_pred ccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeec-----CccCChh-----hhhCcceEEEEEeeccc
Confidence 32 2211 12223456779999999999999 6666211 1111111 12344689999999854
Q ss_pred C
Q 000733 257 D 257 (1324)
Q Consensus 257 d 257 (1324)
+
T Consensus 372 ~ 372 (720)
T KOG0321|consen 372 A 372 (720)
T ss_pred c
Confidence 3
No 162
>PRK01029 tolB translocation protein TolB; Provisional
Probab=95.86 E-value=0.099 Score=62.00 Aligned_cols=117 Identities=10% Similarity=0.066 Sum_probs=69.1
Q ss_pred eeEEEEecCCCEEEEEeecCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeC---CeEEEEEe
Q 000733 109 VDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNV---GRLYRGGV 185 (1324)
Q Consensus 109 VshLAFSsDEs~LAVcaesGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsD---GsL~Vldl 185 (1324)
....+||+||..|+.....++...+|.+..-..+ . ....++-. ...+....|+|+.. .+|.+..+ ..|+++|+
T Consensus 283 ~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g-~-~~~~lt~~-~~~~~~p~wSPDG~-~Laf~~~~~g~~~I~v~dl 358 (428)
T PRK01029 283 QGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEG-Q-SPRLLTKK-YRNSSCPAWSPDGK-KIAFCSVIKGVRQICVYDL 358 (428)
T ss_pred cCCeEECCCCCEEEEEECCCCCceEEEEECcccc-c-ceEEeccC-CCCccceeECCCCC-EEEEEEcCCCCcEEEEEEC
Confidence 3567999999988876644454455543210111 1 11112222 23567889999765 56666543 36899998
Q ss_pred CCC-ceeee---cceeEEEeccCCCEEEEEecC-c---eEEEccCccccccc
Q 000733 186 NGP-LEDVM---DNVDAVEWSVKGKFVAVAKKN-V---LSILTSKLKERLPI 229 (1324)
Q Consensus 186 ~e~-lk~Va---sgVScVcWSPKGKQLVVGlaD-G---IsQyTPDgeeKkvI 229 (1324)
..+ .+.+. ..+.+..|||+|+.|++...+ | |..+..++.....+
T Consensus 359 ~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~L 410 (428)
T PRK01029 359 ATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKI 410 (428)
T ss_pred CCCCeEEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEe
Confidence 654 33332 356789999999999865443 3 66665544433333
No 163
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=95.85 E-value=0.13 Score=59.21 Aligned_cols=198 Identities=14% Similarity=0.194 Sum_probs=112.6
Q ss_pred CCCcceEeeCCcce-EEEEEcCCceE-EEEehHHHHHHhhcccCCcccccccceeeeecCCCC---CeeEEEEe-cCCCE
Q 000733 47 PPSLPLAVSQLSHQ-LIFAAHSSGFC-VARTNDVIDAAKEMKENGTRCCVQELSVVDVPFENE---NVDILSLS-NDEST 120 (1324)
Q Consensus 47 ~~sSLLAVSN~K~G-LvfAAgpdGLv-VarTsDLr~a~ksa~en~tv~~~~dl~vi~VPLp~s---~VshLAFS-sDEs~ 120 (1324)
...|-|.|-+ .-| +...|+.+|.+ |+.++..-+. ++ .+.. .-.+|.+.++-++. .|+.+-.- -|.-.
T Consensus 44 GsvNsL~id~-tegrymlSGgadgsi~v~Dl~n~t~~--e~--s~li--~k~~c~v~~~h~~~Hky~iss~~WyP~DtGm 116 (397)
T KOG4283|consen 44 GSVNSLQIDL-TEGRYMLSGGADGSIAVFDLQNATDY--EA--SGLI--AKHKCIVAKQHENGHKYAISSAIWYPIDTGM 116 (397)
T ss_pred Cccceeeecc-ccceEEeecCCCccEEEEEeccccch--hh--ccce--eheeeeccccCCccceeeeeeeEEeeecCce
Confidence 4688899999 555 56667778854 4544433211 11 1110 11123344444411 12222222 24333
Q ss_pred EEEEeecCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCC-C-eEEEEEeCCeEEEEEeCCC-cee----ee
Q 000733 121 LAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPE-N-SFLALSNVGRLYRGGVNGP-LED----VM 193 (1324)
Q Consensus 121 LAVcaesGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~a-s-lLAVVSsDGsL~Vldl~e~-lk~----Va 193 (1324)
...... +--|.|||+.++.. ...+..+ ..|-.-+|+|... + ++|+-+.+-.+.++|+..+ ... +.
T Consensus 117 FtssSF-DhtlKVWDtnTlQ~-----a~~F~me--~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr 188 (397)
T KOG4283|consen 117 FTSSSF-DHTLKVWDTNTLQE-----AVDFKME--GKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHR 188 (397)
T ss_pred eecccc-cceEEEeeccccee-----eEEeecC--ceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeecccc
Confidence 322221 56899999998754 1223333 4788889999754 4 6667788888999999865 233 24
Q ss_pred cceeEEEeccCCCEE-EEEecCc-eEEEccC--------cccccccccCccccCCCCCCCCceeEEEEEEecCCeEEEEE
Q 000733 194 DNVDAVEWSVKGKFV-AVAKKNV-LSILTSK--------LKERLPISLSFKSWVGDCDVNCSVKVDSIRWVRRDCIIIGC 263 (1324)
Q Consensus 194 sgVScVcWSPKGKQL-VVGlaDG-IsQyTPD--------geeKkvIP~Pf~S~I~D~d~d~sV~V~SI~WLeNd~yLFg~ 263 (1324)
++|.+|.|||+-..| +.|+.|| |..|.-- +...-....|. + .-..-.+-+|-+++|-+...|+..+
T Consensus 189 ~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~---~-~~n~ah~gkvngla~tSd~~~l~~~ 264 (397)
T KOG4283|consen 189 DGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPI---L-KTNTAHYGKVNGLAWTSDARYLASC 264 (397)
T ss_pred CceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCcc---c-cccccccceeeeeeecccchhhhhc
Confidence 899999999999875 7899999 9999421 00000011121 0 0011123478899998776665444
No 164
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=95.84 E-value=0.099 Score=62.27 Aligned_cols=113 Identities=13% Similarity=0.214 Sum_probs=85.5
Q ss_pred CCCeeEEEEecCCCEEEEEeecCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEEEEe
Q 000733 106 NENVDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGGV 185 (1324)
Q Consensus 106 ~s~VshLAFSsDEs~LAVcaesGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl 185 (1324)
+.+|+.|+|.+-+-...+...-++.+.++|++.. ...-..|+.. ..|--++|+|...+.|.+-+.||+|+-+|+
T Consensus 286 ~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~----~~s~~~wk~~--g~VEkv~w~~~se~~f~~~tddG~v~~~D~ 359 (463)
T KOG0270|consen 286 GKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDP----SNSGKEWKFD--GEVEKVAWDPHSENSFFVSTDDGTVYYFDI 359 (463)
T ss_pred CCceeEEEecCCCceEEEeccccceEEeeeccCc----cccCceEEec--cceEEEEecCCCceeEEEecCCceEEeeec
Confidence 5589999998866554444434679999999973 2333457775 368899999998888888899999999999
Q ss_pred CCCc------eeeecceeEEEeccCCCE-EEEEecCc-eEEEccCcc
Q 000733 186 NGPL------EDVMDNVDAVEWSVKGKF-VAVAKKNV-LSILTSKLK 224 (1324)
Q Consensus 186 ~e~l------k~VasgVScVcWSPKGKQ-LVVGlaDG-IsQyTPDge 224 (1324)
.... +.+.++|+|+|.++--+. |+.|+.++ +..|+-++.
T Consensus 360 R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~ 406 (463)
T KOG0270|consen 360 RNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVD 406 (463)
T ss_pred CCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCC
Confidence 6432 334589999999987664 68888889 999965443
No 165
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=95.84 E-value=0.14 Score=58.93 Aligned_cols=122 Identities=11% Similarity=0.137 Sum_probs=87.4
Q ss_pred CCCeeEEEEecCCCEEEEEeecCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEEEEe
Q 000733 106 NENVDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGGV 185 (1324)
Q Consensus 106 ~s~VshLAFSsDEs~LAVcaesGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl 185 (1324)
+.-|+.|+||+..-.|+++..=++.|++|+|+.- |...|-....+ ..+|.++.|+-+. +.+++-..||.+.+||+
T Consensus 27 ~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~--g~~~~ka~~~~--~~PvL~v~Wsddg-skVf~g~~Dk~~k~wDL 101 (347)
T KOG0647|consen 27 EDSISALAFSPQADNLLAAGSWDGTVRIWEVQNS--GQLVPKAQQSH--DGPVLDVCWSDDG-SKVFSGGCDKQAKLWDL 101 (347)
T ss_pred ccchheeEeccccCceEEecccCCceEEEEEecC--Ccccchhhhcc--CCCeEEEEEccCC-ceEEeeccCCceEEEEc
Confidence 3479999999944445444433789999999973 44445333333 4689999998866 47888889999999999
Q ss_pred CCC-ce---eeecceeEEEeccCCC--EEEEEecCc-eEEEccC-cccccccccC
Q 000733 186 NGP-LE---DVMDNVDAVEWSVKGK--FVAVAKKNV-LSILTSK-LKERLPISLS 232 (1324)
Q Consensus 186 ~e~-lk---~VasgVScVcWSPKGK--QLVVGlaDG-IsQyTPD-geeKkvIP~P 232 (1324)
..+ +. .+...|.++-|=+-+- -||.|+=|- |..|.+- -++..++..|
T Consensus 102 ~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LP 156 (347)
T KOG0647|consen 102 ASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLP 156 (347)
T ss_pred cCCCeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeecc
Confidence 755 22 2347898888877666 678898888 9999642 3445556666
No 166
>PRK00178 tolB translocation protein TolB; Provisional
Probab=95.82 E-value=0.16 Score=59.25 Aligned_cols=106 Identities=22% Similarity=0.285 Sum_probs=65.0
Q ss_pred eeEEEEecCCCEEEEEeecC--CeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEe-CC--eEEEE
Q 000733 109 VDILSLSNDESTLAVSLYQS--PHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSN-VG--RLYRG 183 (1324)
Q Consensus 109 VshLAFSsDEs~LAVcaesG--g~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSs-DG--sL~Vl 183 (1324)
+...+||+||..|+.....+ ..|++||+.+ +....+. ..........|+|+.. .++++++ +| .|+++
T Consensus 245 ~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~---~~~~~lt----~~~~~~~~~~~spDg~-~i~f~s~~~g~~~iy~~ 316 (430)
T PRK00178 245 NGAPAWSPDGSKLAFVLSKDGNPEIYVMDLAS---RQLSRVT----NHPAIDTEPFWGKDGR-TLYFTSDRGGKPQIYKV 316 (430)
T ss_pred cCCeEECCCCCEEEEEEccCCCceEEEEECCC---CCeEEcc----cCCCCcCCeEECCCCC-EEEEEECCCCCceEEEE
Confidence 45689999999988665433 3688888764 2222221 1112345678999765 4555553 33 58888
Q ss_pred EeCCC-ceeee---cceeEEEeccCCCEEEEEecC-c---eEEEccC
Q 000733 184 GVNGP-LEDVM---DNVDAVEWSVKGKFVAVAKKN-V---LSILTSK 222 (1324)
Q Consensus 184 dl~e~-lk~Va---sgVScVcWSPKGKQLVVGlaD-G---IsQyTPD 222 (1324)
++..+ .+.+. ......+|||+|+.|++...+ | |..|..+
T Consensus 317 d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~ 363 (430)
T PRK00178 317 NVNGGRAERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQ 363 (430)
T ss_pred ECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECC
Confidence 88643 22222 233457999999999887654 4 5555443
No 167
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=95.81 E-value=0.13 Score=63.86 Aligned_cols=102 Identities=13% Similarity=0.170 Sum_probs=69.0
Q ss_pred CCCeeEEEEecCCCEEEEEeecCCeEEEEEccc-cc---CCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEE
Q 000733 106 NENVDILSLSNDESTLAVSLYQSPHIHFFSVHS-LL---NKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLY 181 (1324)
Q Consensus 106 ~s~VshLAFSsDEs~LAVcaesGg~L~VYDV~S-Ll---ng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~ 181 (1324)
...|.+|++=.|..+|.+.. +|.|.+|++.. .+ .|.+...++++. -+ ....++.|..||+|.
T Consensus 179 tD~VRgL~vl~~~~flScsN--Dg~Ir~w~~~ge~l~~~~ghtn~vYsis~-----------~~-~~~~Ivs~gEDrtlr 244 (745)
T KOG0301|consen 179 TDCVRGLAVLDDSHFLSCSN--DGSIRLWDLDGEVLLEMHGHTNFVYSISM-----------AL-SDGLIVSTGEDRTLR 244 (745)
T ss_pred hhheeeeEEecCCCeEeecC--CceEEEEeccCceeeeeeccceEEEEEEe-----------cC-CCCeEEEecCCceEE
Confidence 44688888888888776655 88999999842 22 234444444431 11 234688899999999
Q ss_pred EEEeCCCceeee---cceeEEEeccCCCEEEEEecCc-eEEEccC
Q 000733 182 RGGVNGPLEDVM---DNVDAVEWSVKGKFVAVAKKNV-LSILTSK 222 (1324)
Q Consensus 182 Vldl~e~lk~Va---sgVScVcWSPKGKQLVVGlaDG-IsQyTPD 222 (1324)
||+.++-...+. ..+-|++.=+.|. ||+|+.|| |.+|+-+
T Consensus 245 iW~~~e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 245 IWKKDECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVD 288 (745)
T ss_pred EeecCceEEEEecCccceEEEEEeeCCC-EEEeccCceEEEEEec
Confidence 999975433332 3454555446676 78899999 9999753
No 168
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=95.75 E-value=0.058 Score=62.44 Aligned_cols=107 Identities=14% Similarity=0.159 Sum_probs=76.4
Q ss_pred eeEEEEecCCCEEEEEeecCCeEEEEEcccccCCCCcceeEEec----CCCcceEEEEecCCCCCeEEEEEeCCeEEEEE
Q 000733 109 VDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSL----NGSTYVKDIRWRKKPENSFLALSNVGRLYRGG 184 (1324)
Q Consensus 109 VshLAFSsDEs~LAVcaesGg~L~VYDV~SLlng~t~P~~sisL----n~st~VrdLaWNP~~aslLAVVSsDGsL~Vld 184 (1324)
.+.|+||+||..|.+.. ..-|++||+.- .|..-+.+.... +-...|.+++++|....++|+-+--..+=+++
T Consensus 161 AhsL~Fs~DGeqlfaGy--krcirvFdt~R--pGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~ 236 (406)
T KOG2919|consen 161 AHSLQFSPDGEQLFAGY--KRCIRVFDTSR--PGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYN 236 (406)
T ss_pred heeEEecCCCCeEeecc--cceEEEeeccC--CCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEe
Confidence 56899999999999999 66999999831 122222221111 11257899999999888888877666665554
Q ss_pred eCC--Cceee---ecceeEEEeccCCCEEEEEecCc--eEEE
Q 000733 185 VNG--PLEDV---MDNVDAVEWSVKGKFVAVAKKNV--LSIL 219 (1324)
Q Consensus 185 l~e--~lk~V---asgVScVcWSPKGKQLVVGlaDG--IsQy 219 (1324)
-.+ .+.++ ..|||-+||.++|..|.+|..-. |.+|
T Consensus 237 ~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~W 278 (406)
T KOG2919|consen 237 DDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCW 278 (406)
T ss_pred cCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEE
Confidence 432 23333 48999999999999999987655 8888
No 169
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=95.69 E-value=0.035 Score=69.29 Aligned_cols=145 Identities=10% Similarity=0.129 Sum_probs=96.1
Q ss_pred CeeEEEEecCCCEEEEEeecCCeEEEEEcccccCCC-CcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEEEEeC
Q 000733 108 NVDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKE-IKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGGVN 186 (1324)
Q Consensus 108 ~VshLAFSsDEs~LAVcaesGg~L~VYDV~SLlng~-t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl~ 186 (1324)
....|+.+.|-.-++++. ...+.+|.+....... ..-.+.-+.+-.-...|++|+-...+++|+|+++|.|.|||++
T Consensus 41 ~~nAIs~nr~~~qiv~AG--rs~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdln 118 (839)
T KOG0269|consen 41 KANAISVNRDINQIVVAG--RSLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLN 118 (839)
T ss_pred ccceEeecCCcceeEEec--ccceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecC
Confidence 467788888888887777 4578888877543210 0000000111124578999996677899999999999999998
Q ss_pred CC--cee------eecceeEEEeccCC-CEEEEEecCc-eEEEccCcccccccccCccccCCCCCCCCceeEEEEEEecC
Q 000733 187 GP--LED------VMDNVDAVEWSVKG-KFVAVAKKNV-LSILTSKLKERLPISLSFKSWVGDCDVNCSVKVDSIRWVRR 256 (1324)
Q Consensus 187 e~--lk~------VasgVScVcWSPKG-KQLVVGlaDG-IsQyTPDgeeKkvIP~Pf~S~I~D~d~d~sV~V~SI~WLeN 256 (1324)
.. .+. +.--|.|+||++-- ..|+.|++|| |..| |+..++.+..=+ + +.=.|-+|.|---
T Consensus 119 k~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~--DlR~~~S~~t~~----~-----nSESiRDV~fsp~ 187 (839)
T KOG0269|consen 119 KSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCW--DLRSKKSKSTFR----S-----NSESIRDVKFSPG 187 (839)
T ss_pred ccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEE--eeeccccccccc----c-----cchhhhceeeccC
Confidence 62 222 23578999999875 4668899999 9999 777776654322 0 1225788888643
Q ss_pred CeEEEEEEe
Q 000733 257 DCIIIGCFQ 265 (1324)
Q Consensus 257 d~yLFg~vy 265 (1324)
.-|.|+.++
T Consensus 188 ~~~~F~s~~ 196 (839)
T KOG0269|consen 188 YGNKFASIH 196 (839)
T ss_pred CCceEEEec
Confidence 334555554
No 170
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=95.68 E-value=2.3 Score=50.17 Aligned_cols=207 Identities=12% Similarity=0.113 Sum_probs=110.8
Q ss_pred CCCeeEEEEecCCCEEEEEeecCCeEEEEEcccccCCCCcceeEEec--CCCcc-------eEEEEecCCCCCeEEEEEe
Q 000733 106 NENVDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSL--NGSTY-------VKDIRWRKKPENSFLALSN 176 (1324)
Q Consensus 106 ~s~VshLAFSsDEs~LAVcaesGg~L~VYDV~SLlng~t~P~~sisL--n~st~-------VrdLaWNP~~aslLAVVSs 176 (1324)
++.+.||+++.|+++|+++.-.+|.|.+|-+++- |...+...... +.+.. +-.....|+..-++++.+-
T Consensus 88 g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~d--G~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG 165 (346)
T COG2706 88 GSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQAD--GSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLG 165 (346)
T ss_pred CCCCeEEEECCCCCEEEEEEccCceEEEEEcccC--CccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecC
Confidence 3367999999999999999988999999999763 54444322222 11111 3344445544433333344
Q ss_pred CCeEEEEEeCCCc-ee-----e--ecceeEEEeccCCCEEEEEec--Cc--eEEEccCc---ccccccccCccccCCCCC
Q 000733 177 VGRLYRGGVNGPL-ED-----V--MDNVDAVEWSVKGKFVAVAKK--NV--LSILTSKL---KERLPISLSFKSWVGDCD 241 (1324)
Q Consensus 177 DGsL~Vldl~e~l-k~-----V--asgVScVcWSPKGKQLVVGla--DG--IsQyTPDg---eeKkvIP~Pf~S~I~D~d 241 (1324)
.-.++++++.++. +. + ..|..=+.+.|+||..-+-.. +- +..|.+.. ++..+|.+=+ +|..
T Consensus 166 ~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP----~dF~ 241 (346)
T COG2706 166 TDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLP----EDFT 241 (346)
T ss_pred CceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCc----cccC
Confidence 5557777776541 11 1 267888999999996654444 33 66666642 2233333211 1233
Q ss_pred CCCceeEEEEEEecCCeEEEEEEeecCCCCcceeEEEEEecCCCCccCCCCCCeEEeecccccccccCCCCCCCcceEEE
Q 000733 242 VNCSVKVDSIRWVRRDCIIIGCFQLTEDGKEENYLVQVIQSKDGKITDASSEPVVLSFSDVFSDVIDDILPSGTGPYLFL 321 (1324)
Q Consensus 242 ~d~sV~V~SI~WLeNd~yLFg~vysaeDgseEsYvV~IIrkKdgk~~~~~ss~tf~~F~D~~~~~~DDi~PFGsgP~~yl 321 (1324)
.+. ....|.=-.+.-||.+...- .+ ...++-+.. + .+.+.+...+.. .|..|+.|.
T Consensus 242 g~~--~~aaIhis~dGrFLYasNRg--~d---sI~~f~V~~-~------~g~L~~~~~~~t----------eg~~PR~F~ 297 (346)
T COG2706 242 GTN--WAAAIHISPDGRFLYASNRG--HD---SIAVFSVDP-D------GGKLELVGITPT----------EGQFPRDFN 297 (346)
T ss_pred CCC--ceeEEEECCCCCEEEEecCC--CC---eEEEEEEcC-C------CCEEEEEEEecc----------CCcCCccce
Confidence 332 23333333444455444321 11 211212221 1 233444444332 355566665
Q ss_pred eeeccccEEEEEecCcccceeE
Q 000733 322 TYVERWGLAISANRKNIDDHVV 343 (1324)
Q Consensus 322 ~~L~dWdLL~VASSaStDIgIL 343 (1324)
.. +.=++|++++-+|.-|.|.
T Consensus 298 i~-~~g~~Liaa~q~sd~i~vf 318 (346)
T COG2706 298 IN-PSGRFLIAANQKSDNITVF 318 (346)
T ss_pred eC-CCCCEEEEEccCCCcEEEE
Confidence 22 2226888888888777664
No 171
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.64 E-value=0.12 Score=59.49 Aligned_cols=110 Identities=13% Similarity=0.063 Sum_probs=82.5
Q ss_pred CeeEEEEecCCCEEEEEeecCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecC-CCCCeEEEEEeCCeEEEEEeC
Q 000733 108 NVDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRK-KPENSFLALSNVGRLYRGGVN 186 (1324)
Q Consensus 108 ~VshLAFSsDEs~LAVcaesGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP-~~aslLAVVSsDGsL~Vldl~ 186 (1324)
-|+.|.|..-|..+|.|..+ ..|.|||..+= .++=.-..+|+..+ ..|-.+.|-+ .....+|.|+-|+++.||.-.
T Consensus 15 lihdVs~D~~GRRmAtCSsD-q~vkI~d~~~~-s~~W~~Ts~Wrah~-~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~ 91 (361)
T KOG2445|consen 15 LIHDVSFDFYGRRMATCSSD-QTVKIWDSTSD-SGTWSCTSSWRAHD-GSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQ 91 (361)
T ss_pred eeeeeeecccCceeeeccCC-CcEEEEeccCC-CCceEEeeeEEecC-CcEEEEEecCccccceEEEEecCCceeeeeec
Confidence 48999999999999999944 68999996432 22333334566654 5788888854 466799999999999999762
Q ss_pred --C-C---ce-----ee---ecceeEEEeccC--CCEEEEEecCc-eEEEc
Q 000733 187 --G-P---LE-----DV---MDNVDAVEWSVK--GKFVAVAKKNV-LSILT 220 (1324)
Q Consensus 187 --e-~---lk-----~V---asgVScVcWSPK--GKQLVVGlaDG-IsQyT 220 (1324)
. . .. .+ .+.|+.|+++|+ |=-||+..+|| |.+|-
T Consensus 92 ~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYE 142 (361)
T KOG2445|consen 92 EKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYE 142 (361)
T ss_pred ccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEe
Confidence 1 1 11 11 379999999998 77889999999 99994
No 172
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=95.59 E-value=0.21 Score=52.12 Aligned_cols=105 Identities=16% Similarity=0.167 Sum_probs=71.6
Q ss_pred eeEEEE-ecCCC-EEEEEeecCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEe-CCeEEEEEe
Q 000733 109 VDILSL-SNDES-TLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSN-VGRLYRGGV 185 (1324)
Q Consensus 109 VshLAF-SsDEs-~LAVcaesGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSs-DGsL~Vldl 185 (1324)
+..+.+ ++|+. +++.+....+.+.+|++.. .......+.. +...|.++.|.|... .+++... ||.+.+|++
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~----~~~~~~~~~~-~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 185 (466)
T COG2319 112 VSKLALSSPDGNSILLASSSLDGTVKLWDLST----PGKLIRTLEG-HSESVTSLAFSPDGK-LLASGSSLDGTIKLWDL 185 (466)
T ss_pred eeeEEEECCCcceEEeccCCCCccEEEEEecC----CCeEEEEEec-CcccEEEEEECCCCC-EEEecCCCCCceEEEEc
Confidence 555555 77777 4444443367899999886 1122222222 346788999999776 5666665 999999999
Q ss_pred CCC--ceee---ecceeEEEeccCCCEEEEE-ecCc-eEEE
Q 000733 186 NGP--LEDV---MDNVDAVEWSVKGKFVAVA-KKNV-LSIL 219 (1324)
Q Consensus 186 ~e~--lk~V---asgVScVcWSPKGKQLVVG-laDG-IsQy 219 (1324)
... ...+ ...|.|++|+|+|..++++ ..|| |.+|
T Consensus 186 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~w 226 (466)
T COG2319 186 RTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLW 226 (466)
T ss_pred CCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEE
Confidence 752 2222 3689999999999955555 8888 8888
No 173
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=95.54 E-value=0.11 Score=63.72 Aligned_cols=79 Identities=18% Similarity=0.173 Sum_probs=61.0
Q ss_pred ceeeeecCCCCCeeEEEEecCCCEEEEEeecCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEe
Q 000733 97 LSVVDVPFENENVDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSN 176 (1324)
Q Consensus 97 l~vi~VPLp~s~VshLAFSsDEs~LAVcaesGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSs 176 (1324)
+.+..+|++ +.|...|+|++|..|+++.++ |.|.+||...=+. .+.... -....++|.|+.+ .|+|++.
T Consensus 251 vsvtsipL~-s~v~~ca~sp~E~kLvlGC~D-gSiiLyD~~~~~t----~~~ka~----~~P~~iaWHp~ga-i~~V~s~ 319 (545)
T PF11768_consen 251 VSVTSIPLP-SQVICCARSPSEDKLVLGCED-GSIILYDTTRGVT----LLAKAE----FIPTLIAWHPDGA-IFVVGSE 319 (545)
T ss_pred EEEEEEecC-CcceEEecCcccceEEEEecC-CeEEEEEcCCCee----eeeeec----ccceEEEEcCCCc-EEEEEcC
Confidence 345678887 889999999999999888866 6899999764322 122211 3457899999766 7889999
Q ss_pred CCeEEEEEeC
Q 000733 177 VGRLYRGGVN 186 (1324)
Q Consensus 177 DGsL~Vldl~ 186 (1324)
-|.|.+||++
T Consensus 320 qGelQ~FD~A 329 (545)
T PF11768_consen 320 QGELQCFDMA 329 (545)
T ss_pred CceEEEEEee
Confidence 9999999986
No 174
>PRK04792 tolB translocation protein TolB; Provisional
Probab=95.52 E-value=0.22 Score=59.44 Aligned_cols=103 Identities=15% Similarity=0.212 Sum_probs=62.2
Q ss_pred eeEEEEecCCCEEEEEeecCC--eEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEe-CC--eEEEE
Q 000733 109 VDILSLSNDESTLAVSLYQSP--HIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSN-VG--RLYRG 183 (1324)
Q Consensus 109 VshLAFSsDEs~LAVcaesGg--~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSs-DG--sL~Vl 183 (1324)
....+||+|+..|+++...++ .|++||+.+ +....+. -. ........|+|+.. .+++.+. +| .|+++
T Consensus 264 ~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~t---g~~~~lt---~~-~~~~~~p~wSpDG~-~I~f~s~~~g~~~Iy~~ 335 (448)
T PRK04792 264 NGAPRFSPDGKKLALVLSKDGQPEIYVVDIAT---KALTRIT---RH-RAIDTEPSWHPDGK-SLIFTSERGGKPQIYRV 335 (448)
T ss_pred cCCeeECCCCCEEEEEEeCCCCeEEEEEECCC---CCeEECc---cC-CCCccceEECCCCC-EEEEEECCCCCceEEEE
Confidence 456799999999987664444 466666542 3222221 11 23456788999765 3444443 33 47888
Q ss_pred EeCCC-ceeee---cceeEEEeccCCCEEEEEecC-c-eEEE
Q 000733 184 GVNGP-LEDVM---DNVDAVEWSVKGKFVAVAKKN-V-LSIL 219 (1324)
Q Consensus 184 dl~e~-lk~Va---sgVScVcWSPKGKQLVVGlaD-G-IsQy 219 (1324)
|+..+ .+.+. ......+|||+|++|++...+ | ..+|
T Consensus 336 dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~ 377 (448)
T PRK04792 336 NLASGKVSRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIA 377 (448)
T ss_pred ECCCCCEEEEecCCCCCcCeeECCCCCEEEEEEecCCceEEE
Confidence 87643 33332 223457999999999887654 4 4444
No 175
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=95.52 E-value=0.067 Score=64.12 Aligned_cols=106 Identities=9% Similarity=0.158 Sum_probs=85.2
Q ss_pred CCCeeEEEEecCCCEEEEEeecCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEEEEe
Q 000733 106 NENVDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGGV 185 (1324)
Q Consensus 106 ~s~VshLAFSsDEs~LAVcaesGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl 185 (1324)
+..|.-++||.||+.+..|... ..|.+||+.+-.- . .++.+ +..+.+++++|+..+.|++-..||.|..||+
T Consensus 258 ~k~Vrd~~~s~~g~~fLS~sfD-~~lKlwDtETG~~--~---~~f~~--~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDi 329 (503)
T KOG0282|consen 258 RKPVRDASFNNCGTSFLSASFD-RFLKLWDTETGQV--L---SRFHL--DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDI 329 (503)
T ss_pred hhhhhhhhccccCCeeeeeecc-eeeeeeccccceE--E---EEEec--CCCceeeecCCCCCcEEEEecCCCcEEEEec
Confidence 3458899999999877666544 6899999997432 2 22333 3578899999999889999999999999999
Q ss_pred CCCceee------ecceeEEEeccCCCEEEEEecCc-eEEEc
Q 000733 186 NGPLEDV------MDNVDAVEWSVKGKFVAVAKKNV-LSILT 220 (1324)
Q Consensus 186 ~e~lk~V------asgVScVcWSPKGKQLVVGlaDG-IsQyT 220 (1324)
..+ +++ ...|..+.+=++|++.+....|+ +.+|.
T Consensus 330 Rs~-kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe 370 (503)
T KOG0282|consen 330 RSG-KVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWE 370 (503)
T ss_pred cch-HHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEE
Confidence 766 332 47889999999999999999999 99995
No 176
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.51 E-value=0.016 Score=71.73 Aligned_cols=106 Identities=16% Similarity=0.188 Sum_probs=79.0
Q ss_pred CCCeeEEEEecCCCEEEEEeecCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEEEEe
Q 000733 106 NENVDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGGV 185 (1324)
Q Consensus 106 ~s~VshLAFSsDEs~LAVcaesGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl 185 (1324)
.+.|..|-|+.+|.+|+++. ..|.|.|||+..-. -...++-..+ .+..+.|+|- ...+|--+.|+.+.+||+
T Consensus 70 espIeSl~f~~~E~Llaags-asgtiK~wDleeAk--~vrtLtgh~~----~~~sv~f~P~-~~~~a~gStdtd~~iwD~ 141 (825)
T KOG0267|consen 70 ESPIESLTFDTSERLLAAGS-ASGTIKVWDLEEAK--IVRTLTGHLL----NITSVDFHPY-GEFFASGSTDTDLKIWDI 141 (825)
T ss_pred CCcceeeecCcchhhhcccc-cCCceeeeehhhhh--hhhhhhcccc----Ccceeeeccc-eEEeccccccccceehhh
Confidence 34699999999999776655 44699999988432 2333333333 3566779994 446777889999999999
Q ss_pred C-CCceee----ecceeEEEeccCCCEEEEEecCc-eEEE
Q 000733 186 N-GPLEDV----MDNVDAVEWSVKGKFVAVAKKNV-LSIL 219 (1324)
Q Consensus 186 ~-e~lk~V----asgVScVcWSPKGKQLVVGlaDG-IsQy 219 (1324)
. .+...+ ..+|.|+.++|+|+.++.|..|- +.+|
T Consensus 142 Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~ 181 (825)
T KOG0267|consen 142 RKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIW 181 (825)
T ss_pred hccCceeeecCCcceeEEEeecCCCceeeccCCcceeeee
Confidence 7 443333 25789999999999999999988 9999
No 177
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=95.48 E-value=0.25 Score=57.01 Aligned_cols=139 Identities=12% Similarity=0.141 Sum_probs=89.1
Q ss_pred CeeEEEEecCCCEEEE-EeecCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEEEEeC
Q 000733 108 NVDILSLSNDESTLAV-SLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGGVN 186 (1324)
Q Consensus 108 ~VshLAFSsDEs~LAV-caesGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl~ 186 (1324)
+|..+.+ -+..|+| |. +-.+.+||++.+-.-. ..+.-++. -.+|+++-.|+. +.|++-+-||.+.|=.+.
T Consensus 137 kVy~~~v--~g~~LvVg~~--~r~v~iyDLRn~~~~~--q~reS~lk--yqtR~v~~~pn~-eGy~~sSieGRVavE~~d 207 (323)
T KOG1036|consen 137 KVYCMDV--SGNRLVVGTS--DRKVLIYDLRNLDEPF--QRRESSLK--YQTRCVALVPNG-EGYVVSSIEGRVAVEYFD 207 (323)
T ss_pred eEEEEec--cCCEEEEeec--CceEEEEEcccccchh--hhccccce--eEEEEEEEecCC-CceEEEeecceEEEEccC
Confidence 4444443 4556677 55 6799999999874321 11111122 578999999954 479999999999887665
Q ss_pred CC----cee--------------eecceeEEEeccCCCEEEEEecCc-eEEEccCcccccccccCccccCCCCCCCCcee
Q 000733 187 GP----LED--------------VMDNVDAVEWSVKGKFVAVAKKNV-LSILTSKLKERLPISLSFKSWVGDCDVNCSVK 247 (1324)
Q Consensus 187 e~----lk~--------------VasgVScVcWSPKGKQLVVGlaDG-IsQyTPDgeeKkvIP~Pf~S~I~D~d~d~sV~ 247 (1324)
.. -+. +.=.|-+++++|.=+.+|.|+.|| |.+| ++..++.|--=+ ..+..
T Consensus 208 ~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~W--d~~~rKrl~q~~---------~~~~S 276 (323)
T KOG1036|consen 208 DSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIW--DLFNRKRLKQLA---------KYETS 276 (323)
T ss_pred CchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEc--cCcchhhhhhcc---------CCCCc
Confidence 43 111 123688999999999999999999 9999 455555543211 01224
Q ss_pred EEEEEEecCCeEE-EEEEee
Q 000733 248 VDSIRWVRRDCII-IGCFQL 266 (1324)
Q Consensus 248 V~SI~WLeNd~yL-Fg~vys 266 (1324)
|.+|..-.+.+.| ++..|.
T Consensus 277 I~slsfs~dG~~LAia~sy~ 296 (323)
T KOG1036|consen 277 ISSLSFSMDGSLLAIASSYQ 296 (323)
T ss_pred eEEEEeccCCCeEEEEechh
Confidence 6666665555444 444443
No 178
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.42 E-value=0.23 Score=63.26 Aligned_cols=200 Identities=16% Similarity=0.109 Sum_probs=119.0
Q ss_pred CCCcceEeeCCcceEEEEEcCCceEEEEehHHHHHHhhcc-------cCCc----ccccccceeeeecCC---CCCeeEE
Q 000733 47 PPSLPLAVSQLSHQLIFAAHSSGFCVARTNDVIDAAKEMK-------ENGT----RCCVQELSVVDVPFE---NENVDIL 112 (1324)
Q Consensus 47 ~~sSLLAVSN~K~GLvfAAgpdGLvVarTsDLr~a~ksa~-------en~t----v~~~~dl~vi~VPLp---~s~VshL 112 (1324)
++.=+||+-. +--|++|||.+|++|+.++--|.+.+-.+ ++-+ -....++.+..+--+ ...+..+
T Consensus 293 dRFW~laahP-~lNLfAAgHDsGm~VFkleRErpa~~v~~n~LfYvkd~~i~~~d~~t~~d~~v~~lr~~g~~~~~~~sm 371 (1202)
T KOG0292|consen 293 DRFWILAAHP-ELNLFAAGHDSGMIVFKLERERPAYAVNGNGLFYVKDRFIRSYDLRTQKDTAVASLRRPGTLWQPPRSL 371 (1202)
T ss_pred CeEEEEEecC-CcceeeeecCCceEEEEEcccCceEEEcCCEEEEEccceEEeeeccccccceeEeccCCCcccCCccee
Confidence 4566788888 88899999999999999986666654321 1111 011122222222111 2357889
Q ss_pred EEecCCCEEEEEee-cCCeEEEEEcccccCCCCc------------------ceeEEec-CCCcceEEEE-------ecC
Q 000733 113 SLSNDESTLAVSLY-QSPHIHFFSVHSLLNKEIK------------------PSFSCSL-NGSTYVKDIR-------WRK 165 (1324)
Q Consensus 113 AFSsDEs~LAVcae-sGg~L~VYDV~SLlng~t~------------------P~~sisL-n~st~VrdLa-------WNP 165 (1324)
.+++-+....+|.. .++...+|.+..=..+... -|..+.. +.+..|+++. .+|
T Consensus 372 sYNpae~~vlics~~~n~~y~L~~ipk~~~~~~~~~~~~k~tG~~a~fvarNrfavl~k~~~~v~ik~l~N~vtkkl~~~ 451 (1202)
T KOG0292|consen 372 SYNPAENAVLICSNLDNGEYELVQIPKDSDGVSDGKDVKKGTGEGALFVARNRFAVLDKSNEQVVIKNLKNKVTKKLLLP 451 (1202)
T ss_pred eeccccCeEEEEeccCCCeEEEEEecCcccccCCchhhhcCCCCceEEEEecceEEEEecCcceEEecccchhhhcccCc
Confidence 99999988888841 2566666655432211111 1111111 2223344432 233
Q ss_pred CC-------CCeEEEEEeCCeEEEEEeCCCce---eeecceeEEEeccCCCEEEEEecCceEEEccCcccccccccCccc
Q 000733 166 KP-------ENSFLALSNVGRLYRGGVNGPLE---DVMDNVDAVEWSVKGKFVAVAKKNVLSILTSKLKERLPISLSFKS 235 (1324)
Q Consensus 166 ~~-------aslLAVVSsDGsL~Vldl~e~lk---~VasgVScVcWSPKGKQLVVGlaDGIsQyTPDgeeKkvIP~Pf~S 235 (1324)
.. .....+|.+...+.++|+....+ +-...|.-||||+++.++|.-+++.|++++-+++....|.
T Consensus 452 ~~~~~IF~ag~g~lll~~~~~v~lfdvQq~~~~~si~~s~vkyvvws~dm~~vAll~Kh~i~i~~kkL~l~~sih----- 526 (1202)
T KOG0292|consen 452 ESTDDIFYAGTGNLLLRSPDSVTLFDVQQKKKVGSIKVSKVKYVVWSNDMSRVALLSKHTITIADKKLELLCSIH----- 526 (1202)
T ss_pred ccccceeeccCccEEEEcCCeEEEEEeecceEEEEEecCceeEEEEcCccchhhhcccceEEEEecchhheecch-----
Confidence 11 12334455566677888865422 2237899999999999999888888999965554333222
Q ss_pred cCCCCCCCCceeEEEEEEecCCeEE
Q 000733 236 WVGDCDVNCSVKVDSIRWVRRDCII 260 (1324)
Q Consensus 236 ~I~D~d~d~sV~V~SI~WLeNd~yL 260 (1324)
+.++|.|=.|.++..|+
T Consensus 527 --------Etiriksgawde~gVfi 543 (1202)
T KOG0292|consen 527 --------ETIRIKSGAWDEDGVFI 543 (1202)
T ss_pred --------heeEeeeceeccCceEE
Confidence 35799999999997443
No 179
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=95.37 E-value=2.4 Score=47.75 Aligned_cols=223 Identities=12% Similarity=0.136 Sum_probs=117.6
Q ss_pred ccceeecccceeeecCCccccccCCCCCCCCCCCCCcceEeeCCcceEEEEEcCC-ceEEEEehHHHHHHhhcccCCccc
Q 000733 14 EGGRIESNDFFFDEIGESIPIIRDDDSQFDLQNPPSLPLAVSQLSHQLIFAAHSS-GFCVARTNDVIDAAKEMKENGTRC 92 (1324)
Q Consensus 14 egEeI~TeDFgFK~Lgk~vslLRLfss~~dLP~~~sSLLAVSN~K~GLvfAAgpd-GLvVarTsDLr~a~ksa~en~tv~ 92 (1324)
.|||-+.+--+|..+.. . . +. +...-+|.-. --||.++|..+ .|.|+.--+|++.-.. .+...
T Consensus 12 kgeedd~~k~~f~~i~~-l---~--ds------qairav~fhp-~g~lyavgsnskt~ric~yp~l~~~r~~---hea~~ 75 (350)
T KOG0641|consen 12 KGEEDDKEKKHFEAINI-L---E--DS------QAIRAVAFHP-AGGLYAVGSNSKTFRICAYPALIDLRHA---HEAAK 75 (350)
T ss_pred cCccccccccceEEEEE-e---c--ch------hheeeEEecC-CCceEEeccCCceEEEEccccccCcccc---ccccc
Confidence 45555666667766654 1 1 11 1122334444 55666666544 4777755555432111 11111
Q ss_pred ccccc-eeeeecCCCCCeeEEEEecCCCEEEEEeecCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCC----
Q 000733 93 CVQEL-SVVDVPFENENVDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKP---- 167 (1324)
Q Consensus 93 ~~~dl-~vi~VPLp~s~VshLAFSsDEs~LAVcaesGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~---- 167 (1324)
.+|.+ |.... -....|.+++.|++|..||... ++..|.+.-..+=...-+.|-.++.... .+||||++--+.
T Consensus 76 ~pp~v~~kr~k-hhkgsiyc~~ws~~geliatgs-ndk~ik~l~fn~dt~~~~g~dle~nmhd-gtirdl~fld~~~s~~ 152 (350)
T KOG0641|consen 76 QPPSVLCKRNK-HHKGSIYCTAWSPCGELIATGS-NDKTIKVLPFNADTCNATGHDLEFNMHD-GTIRDLAFLDDPESGG 152 (350)
T ss_pred CCCeEEeeecc-ccCccEEEEEecCccCeEEecC-CCceEEEEecccccccccCcceeeeecC-CceeeeEEecCCCcCc
Confidence 12221 21222 1234799999999999666544 4445555322221112222322333322 345555553321
Q ss_pred -----------------------------------------CCeEEEEEeCCeEEEEEeCCC--ceee----------ec
Q 000733 168 -----------------------------------------ENSFLALSNVGRLYRGGVNGP--LEDV----------MD 194 (1324)
Q Consensus 168 -----------------------------------------aslLAVVSsDGsL~Vldl~e~--lk~V----------as 194 (1324)
.-+||--+.|.+++.||+.-. +..+ .+
T Consensus 153 ~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~gless 232 (350)
T KOG0641|consen 153 AILASAGAGDCKIYITDCGRGQGFHALSGHTGHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESS 232 (350)
T ss_pred eEEEecCCCcceEEEeecCCCCcceeecCCcccEEEEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccc
Confidence 124444456666777776432 1111 25
Q ss_pred ceeEEEeccCCCEEEEEecCc-eEEEccCcccccccccCccccCCCCCCCCceeEEEEEEecCCeEEEEEEee
Q 000733 195 NVDAVEWSVKGKFVAVAKKNV-LSILTSKLKERLPISLSFKSWVGDCDVNCSVKVDSIRWVRRDCIIIGCFQL 266 (1324)
Q Consensus 195 gVScVcWSPKGKQLVVGlaDG-IsQyTPDgeeKkvIP~Pf~S~I~D~d~d~sV~V~SI~WLeNd~yLFg~vys 266 (1324)
.|.+||--|-|+.||.|-+|. +..|. ..-.+-|.+= .+....|..|++--...|++.+.|.
T Consensus 233 avaav~vdpsgrll~sg~~dssc~lyd--irg~r~iq~f---------~phsadir~vrfsp~a~yllt~syd 294 (350)
T KOG0641|consen 233 AVAAVAVDPSGRLLASGHADSSCMLYD--IRGGRMIQRF---------HPHSADIRCVRFSPGAHYLLTCSYD 294 (350)
T ss_pred eeEEEEECCCcceeeeccCCCceEEEE--eeCCceeeee---------CCCccceeEEEeCCCceEEEEeccc
Confidence 789999999999999999999 99994 3334444331 1123356777776555677777763
No 180
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=95.36 E-value=0.11 Score=65.51 Aligned_cols=103 Identities=11% Similarity=0.093 Sum_probs=74.8
Q ss_pred CeeEEEEecCCCEEEEEeecCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEEEEeCC
Q 000733 108 NVDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGGVNG 187 (1324)
Q Consensus 108 ~VshLAFSsDEs~LAVcaesGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl~e 187 (1324)
.|.-||+-.=+..++.|.. .|.|.|||-.. ..+..+++++. .+..+...- .+.++|+...|=.++++|+..
T Consensus 495 ~V~gla~D~~n~~~vsa~~-~Gilkfw~f~~-----k~l~~~l~l~~--~~~~iv~hr-~s~l~a~~~ddf~I~vvD~~t 565 (910)
T KOG1539|consen 495 EVTGLAVDGTNRLLVSAGA-DGILKFWDFKK-----KVLKKSLRLGS--SITGIVYHR-VSDLLAIALDDFSIRVVDVVT 565 (910)
T ss_pred ceeEEEecCCCceEEEccC-cceEEEEecCC-----cceeeeeccCC--Ccceeeeee-hhhhhhhhcCceeEEEEEchh
Confidence 4666766555554655553 57999998553 33666666653 344454433 345899999999999999864
Q ss_pred Ccee------eecceeEEEeccCCCEEEEEecCc-eEEEc
Q 000733 188 PLED------VMDNVDAVEWSVKGKFVAVAKKNV-LSILT 220 (1324)
Q Consensus 188 ~lk~------VasgVScVcWSPKGKQLVVGlaDG-IsQyT 220 (1324)
. ++ +...++.+|+||+||-|+++..|+ |..|.
T Consensus 566 ~-kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wD 604 (910)
T KOG1539|consen 566 R-KVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWD 604 (910)
T ss_pred h-hhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEe
Confidence 3 22 358999999999999999999999 99994
No 181
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=95.35 E-value=0.18 Score=57.86 Aligned_cols=149 Identities=14% Similarity=0.217 Sum_probs=98.5
Q ss_pred CCCeeEEEEecCCCEEEEEeecCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeC-CeEEEEE
Q 000733 106 NENVDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNV-GRLYRGG 184 (1324)
Q Consensus 106 ~s~VshLAFSsDEs~LAVcaesGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsD-GsL~Vld 184 (1324)
+..|+-|||.-++.-+.+.+..+|.+++||+++|-... =.++ ..++++.+.-|.||+...+.+|.+..| ..+.|+|
T Consensus 196 DKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHST--IIYE-~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLD 272 (364)
T KOG0290|consen 196 DKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHST--IIYE-DPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILD 272 (364)
T ss_pred CcceeEEEeccCccceEEEecCCCcEEEEEecccccce--EEec-CCCCCCcceeeccCcCCchHHhhhhcCCceEEEEE
Confidence 55788999999887776666557899999999985421 1111 123357889999999988888866554 4578889
Q ss_pred eCCCce------eeecceeEEEeccC-CCEEEEEecCc-eEEEccCccc--ccccccCccccCCCCCCCCceeEEEEEEe
Q 000733 185 VNGPLE------DVMDNVDAVEWSVK-GKFVAVAKKNV-LSILTSKLKE--RLPISLSFKSWVGDCDVNCSVKVDSIRWV 254 (1324)
Q Consensus 185 l~e~lk------~VasgVScVcWSPK-GKQLVVGlaDG-IsQyTPDgee--KkvIP~Pf~S~I~D~d~d~sV~V~SI~WL 254 (1324)
+...-. -+..-|-.++|-|- ++.|+.++.|. ..+| |+.. +..+--|- + .+.. ..+|--|+|-
T Consensus 273 iR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliW--Dl~q~~~~~~~dPi---l-ay~a--~~EVNqi~Ws 344 (364)
T KOG0290|consen 273 IRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIW--DLQQMPRENGEDPI---L-AYTA--GGEVNQIQWS 344 (364)
T ss_pred ecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEE--ecccccccCCCCch---h-hhhc--cceeeeeeec
Confidence 975422 23478999999996 56777777777 8888 4432 22233331 0 1222 2378899996
Q ss_pred cCCeEEEEEEe
Q 000733 255 RRDCIIIGCFQ 265 (1324)
Q Consensus 255 eNd~yLFg~vy 265 (1324)
...-=.|++.+
T Consensus 345 ~~~~Dwiai~~ 355 (364)
T KOG0290|consen 345 SSQPDWIAICF 355 (364)
T ss_pred ccCCCEEEEEe
Confidence 43222466655
No 182
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=95.26 E-value=0.12 Score=63.86 Aligned_cols=116 Identities=14% Similarity=0.166 Sum_probs=86.7
Q ss_pred CeeEEEEecCCCEEEEEeecCCeEEEEEcccccCCCCcceeEEec--CCCcceEEEEecCCC----CCeEEEEEeCCeEE
Q 000733 108 NVDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSL--NGSTYVKDIRWRKKP----ENSFLALSNVGRLY 181 (1324)
Q Consensus 108 ~VshLAFSsDEs~LAVcaesGg~L~VYDV~SLlng~t~P~~sisL--n~st~VrdLaWNP~~----aslLAVVSsDGsL~ 181 (1324)
++..-+.+.||.+|+....+| .|.+- |+..++...|.- +++..|-.++|||+. .+.+||+.=+-+|.
T Consensus 134 R~~~CsWtnDGqylalG~~nG-TIsiR------Nk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLS 206 (1081)
T KOG1538|consen 134 RIICCSWTNDGQYLALGMFNG-TISIR------NKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLS 206 (1081)
T ss_pred eEEEeeecCCCcEEEEeccCc-eEEee------cCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeE
Confidence 577778899999999998664 44433 555555555533 345789999999975 35889999899998
Q ss_pred EEEeCCCc----eeeecceeEEEeccCCCEEEEEecCc-eEEEccCcccccccc
Q 000733 182 RGGVNGPL----EDVMDNVDAVEWSVKGKFVAVAKKNV-LSILTSKLKERLPIS 230 (1324)
Q Consensus 182 Vldl~e~l----k~VasgVScVcWSPKGKQLVVGlaDG-IsQyTPDgeeKkvIP 230 (1324)
.+.+.+.. +.+.-...|+...+.|.++.+|+.|| +.+||-+|.--.++.
T Consensus 207 Fy~LsG~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~GvrLGTvg 260 (1081)
T KOG1538|consen 207 FYQLSGKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTRDGVRLGTVG 260 (1081)
T ss_pred EEEecceeecccccCCCCchhheeccCCcEEEEccCCCceEEEeecCeEEeecc
Confidence 88886541 22335677999999999999999999 999998775444433
No 183
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=95.24 E-value=0.054 Score=64.91 Aligned_cols=141 Identities=12% Similarity=0.043 Sum_probs=93.2
Q ss_pred CCCeeEEEEecCCCEEEEEeecCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEEEEe
Q 000733 106 NENVDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGGV 185 (1324)
Q Consensus 106 ~s~VshLAFSsDEs~LAVcaesGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl 185 (1324)
...|+.+-|.+---.|..+...++.|.+|+|..- + .-+.++ .++...|++++||+... .|..++=|+.|.+||+
T Consensus 214 ~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~--~--~~lrtf-~gH~k~Vrd~~~s~~g~-~fLS~sfD~~lKlwDt 287 (503)
T KOG0282|consen 214 TKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDD--R--RCLRTF-KGHRKPVRDASFNNCGT-SFLSASFDRFLKLWDT 287 (503)
T ss_pred ccccchhhhccceeeEEEecCCCceEEEEEEecC--c--ceehhh-hcchhhhhhhhccccCC-eeeeeecceeeeeecc
Confidence 3467777666633334444444789999999872 2 111111 14557899999999765 6888999999999999
Q ss_pred CCCce---ee-ecceeEEEeccCC-CEEEEEecCc-eEEEccCcccccccccCccccCCCCCCCCceeEEEEEEecCCeE
Q 000733 186 NGPLE---DV-MDNVDAVEWSVKG-KFVAVAKKNV-LSILTSKLKERLPISLSFKSWVGDCDVNCSVKVDSIRWVRRDCI 259 (1324)
Q Consensus 186 ~e~lk---~V-asgVScVcWSPKG-KQLVVGlaDG-IsQyTPDgeeKkvIP~Pf~S~I~D~d~d~sV~V~SI~WLeNd~y 259 (1324)
..+.. +. ..-+.||-+-|++ +-+++|+.|| |.||. ....+++. . ++.. --.|.+|..+.++.+
T Consensus 288 ETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wD--iRs~kvvq-e-------Yd~h-Lg~i~~i~F~~~g~r 356 (503)
T KOG0282|consen 288 ETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWD--IRSGKVVQ-E-------YDRH-LGAILDITFVDEGRR 356 (503)
T ss_pred ccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEe--ccchHHHH-H-------HHhh-hhheeeeEEccCCce
Confidence 76622 11 2578899999999 8889999999 99994 32222211 1 1111 124778888877665
Q ss_pred EEEE
Q 000733 260 IIGC 263 (1324)
Q Consensus 260 LFg~ 263 (1324)
++..
T Consensus 357 Fiss 360 (503)
T KOG0282|consen 357 FISS 360 (503)
T ss_pred Eeee
Confidence 5443
No 184
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=95.24 E-value=0.081 Score=63.78 Aligned_cols=108 Identities=11% Similarity=0.142 Sum_probs=81.5
Q ss_pred CCeeEEEEecCCCEEEEEeecCCeEEEEEcccccCCCCcceeEEec-CCCcceEEEEecCCCCCeEEEEEeCCeEEEEEe
Q 000733 107 ENVDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSL-NGSTYVKDIRWRKKPENSFLALSNVGRLYRGGV 185 (1324)
Q Consensus 107 s~VshLAFSsDEs~LAVcaesGg~L~VYDV~SLlng~t~P~~sisL-n~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl 185 (1324)
+-|..++.|.+-..+..|. .|.|.|||+..= +++.|...... +.+..||..+-.|+.. .++|-..--+|.|||+
T Consensus 420 EvVcAvtIS~~trhVyTgG--kgcVKVWdis~p--g~k~PvsqLdcl~rdnyiRSckL~pdgr-tLivGGeastlsiWDL 494 (705)
T KOG0639|consen 420 EVVCAVTISNPTRHVYTGG--KGCVKVWDISQP--GNKSPVSQLDCLNRDNYIRSCKLLPDGR-TLIVGGEASTLSIWDL 494 (705)
T ss_pred cEEEEEEecCCcceeEecC--CCeEEEeeccCC--CCCCccccccccCcccceeeeEecCCCc-eEEeccccceeeeeec
Confidence 3455566666666666666 678999998864 67888777655 5678999999999766 5777777888999999
Q ss_pred CCCceeeeccee-------EEEeccCCCEEEEEecCc-eEEE
Q 000733 186 NGPLEDVMDNVD-------AVEWSVKGKFVAVAKKNV-LSIL 219 (1324)
Q Consensus 186 ~e~lk~VasgVS-------cVcWSPKGKQLVVGlaDG-IsQy 219 (1324)
......|....+ +++-||+-|-..+.+.|| |.+|
T Consensus 495 AapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vw 536 (705)
T KOG0639|consen 495 AAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVW 536 (705)
T ss_pred cCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEE
Confidence 876444432222 367889999999999999 9999
No 185
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=95.21 E-value=0.24 Score=60.88 Aligned_cols=85 Identities=8% Similarity=0.066 Sum_probs=63.5
Q ss_pred EEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEEEEeCCCceee---ecceeEEEeccCCCEE
Q 000733 132 HFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGGVNGPLEDV---MDNVDAVEWSVKGKFV 208 (1324)
Q Consensus 132 ~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl~e~lk~V---asgVScVcWSPKGKQL 208 (1324)
-+|++. .++.+.+...++.-.+.|...++||+.. .+++...||+|.+||...+++.. .--++.++|.|.|--+
T Consensus 239 ciYE~~---r~klqrvsvtsipL~s~v~~ca~sp~E~-kLvlGC~DgSiiLyD~~~~~t~~~ka~~~P~~iaWHp~gai~ 314 (545)
T PF11768_consen 239 CIYECS---RNKLQRVSVTSIPLPSQVICCARSPSED-KLVLGCEDGSIILYDTTRGVTLLAKAEFIPTLIAWHPDGAIF 314 (545)
T ss_pred EEEEee---cCceeEEEEEEEecCCcceEEecCcccc-eEEEEecCCeEEEEEcCCCeeeeeeecccceEEEEcCCCcEE
Confidence 346654 3334444444443336899999999665 68888999999999998664432 2457889999999999
Q ss_pred EEEecCc-eEEEc
Q 000733 209 AVAKKNV-LSILT 220 (1324)
Q Consensus 209 VVGlaDG-IsQyT 220 (1324)
++|...| |..|.
T Consensus 315 ~V~s~qGelQ~FD 327 (545)
T PF11768_consen 315 VVGSEQGELQCFD 327 (545)
T ss_pred EEEcCCceEEEEE
Confidence 9999999 99995
No 186
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=95.14 E-value=0.17 Score=58.83 Aligned_cols=99 Identities=17% Similarity=0.331 Sum_probs=76.4
Q ss_pred CeeEEEEecCCCEEEEEeec-CCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEEEEeC
Q 000733 108 NVDILSLSNDESTLAVSLYQ-SPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGGVN 186 (1324)
Q Consensus 108 ~VshLAFSsDEs~LAVcaes-Gg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl~ 186 (1324)
.+..||||||+.+++.-..+ -..|-+||++.+-- +.+-+. -..||.+.|.|+.+ .+++|+..-.||.|...
T Consensus 320 g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l------~avLiQ-k~piraf~WdP~~p-rL~vctg~srLY~W~ps 391 (447)
T KOG4497|consen 320 GAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKL------HAVLIQ-KHPIRAFEWDPGRP-RLVVCTGKSRLYFWAPS 391 (447)
T ss_pred ccceeeecCCceEEeeecCCCCceEEEEechhhhh------hhhhhh-ccceeEEEeCCCCc-eEEEEcCCceEEEEcCC
Confidence 57799999999998766543 34789999886532 111111 24699999999887 59999999999999886
Q ss_pred CCceee-----ecceeEEEeccCCCEEEEEecCc
Q 000733 187 GPLEDV-----MDNVDAVEWSVKGKFVAVAKKNV 215 (1324)
Q Consensus 187 e~lk~V-----asgVScVcWSPKGKQLVVGlaDG 215 (1324)
.. ..+ .-+|..+||--.|.-||.-++|.
T Consensus 392 g~-~~V~vP~~GF~i~~l~W~~~g~~i~l~~kDa 424 (447)
T KOG4497|consen 392 GP-RVVGVPKKGFNIQKLQWLQPGEFIVLCGKDA 424 (447)
T ss_pred Cc-eEEecCCCCceeeeEEecCCCcEEEEEcCCc
Confidence 64 222 25889999999999999999998
No 187
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=95.11 E-value=0.055 Score=62.71 Aligned_cols=101 Identities=13% Similarity=0.229 Sum_probs=72.6
Q ss_pred EEEEecCCCEEEEEeecCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEEEEeCCCc-
Q 000733 111 ILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGGVNGPL- 189 (1324)
Q Consensus 111 hLAFSsDEs~LAVcaesGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl~e~l- 189 (1324)
.-.||+||+++|+|. .-.|-+=|+.+|. .-.++.+ + ..|.-+.|.-+.-.-+.+...||.+.||++...-
T Consensus 13 ~c~fSp~g~yiAs~~--~yrlviRd~~tlq---~~qlf~c-l---dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew 83 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLS--RYRLVIRDSETLQ---LHQLFLC-L---DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEW 83 (447)
T ss_pred ceeECCCCCeeeeee--eeEEEEeccchhh---HHHHHHH-H---HHhhheeeeccceeeeeeeeccceEEEEEeeccee
Confidence 347899999999999 4477777777763 2333332 2 2577789986555566677889999999996441
Q ss_pred -eee---ecceeEEEeccCCCEEEEEecCc--eEEEc
Q 000733 190 -EDV---MDNVDAVEWSVKGKFVAVAKKNV--LSILT 220 (1324)
Q Consensus 190 -k~V---asgVScVcWSPKGKQLVVGlaDG--IsQyT 220 (1324)
-.+ ..+.+++||||+|+.|..-+.=. |+.|+
T Consensus 84 ~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWS 120 (447)
T KOG4497|consen 84 YCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWS 120 (447)
T ss_pred EEEeccCCCcceeeeECCCcceEeeeecceeEEEEEE
Confidence 111 27899999999999887666555 88885
No 188
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=95.04 E-value=0.085 Score=64.01 Aligned_cols=130 Identities=17% Similarity=0.209 Sum_probs=80.5
Q ss_pred eeEEEEecCCCEEEEEeecCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCC------CCCeEEEEEeCCeEEE
Q 000733 109 VDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKK------PENSFLALSNVGRLYR 182 (1324)
Q Consensus 109 VshLAFSsDEs~LAVcaesGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~------~aslLAVVSsDGsL~V 182 (1324)
|..+..+..+..|.+|. +-.+.+|. ++.+...+- +.+.+.-.-.++.+-|- .++.|++|++||.+.+
T Consensus 17 vc~v~w~~~eei~~~~d--Dh~~~~~~--~~~~~s~~~---~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~i 89 (737)
T KOG1524|consen 17 VCCVDWSSNEEIYFVSD--DHQIFKWS--DVSRDSVEV---AKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVI 89 (737)
T ss_pred EEeecccccceEEEecc--CceEEEee--cccchhhhh---hhCCcccCCccccccccccCCCCCcceEEEEcCCceEEE
Confidence 44566677788888888 55666654 222221110 00100000011111121 3569999999999999
Q ss_pred EEeCCCc----eeeecceeEEEeccCCCEEEEEecCc-eEEEccCcccccccccCccccCCCCCCCCceeEEEEEEecCC
Q 000733 183 GGVNGPL----EDVMDNVDAVEWSVKGKFVAVAKKNV-LSILTSKLKERLPISLSFKSWVGDCDVNCSVKVDSIRWVRRD 257 (1324)
Q Consensus 183 ldl~e~l----k~VasgVScVcWSPKGKQLVVGlaDG-IsQyTPDgeeKkvIP~Pf~S~I~D~d~d~sV~V~SI~WLeNd 257 (1324)
++-...+ ..+...+.|.-|+|+|.-|+..+.|| |.+|+-.|-.+-++..- .-.|-+++|-.|.
T Consensus 90 l~k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~------------~~~v~c~~W~p~S 157 (737)
T KOG1524|consen 90 LNKSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQN------------EESIRCARWAPNS 157 (737)
T ss_pred ecccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchHHHHHhhc------------CceeEEEEECCCC
Confidence 8765543 33458899999999999999999999 99998776555444321 1246667776543
No 189
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=95.01 E-value=0.21 Score=62.12 Aligned_cols=136 Identities=15% Similarity=0.150 Sum_probs=97.3
Q ss_pred CCCCCeeEEEEecCCCEEEEEeecCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEEE
Q 000733 104 FENENVDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRG 183 (1324)
Q Consensus 104 Lp~s~VshLAFSsDEs~LAVcaesGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vl 183 (1324)
.+.+.|..|++=+++.+|-.|+ +..|++|.-..+++ -| + ++...||.|+.-|.. .|+-|++||.++.|
T Consensus 138 gH~asVWAv~~l~e~~~vTgsa--DKtIklWk~~~~l~----tf---~-gHtD~VRgL~vl~~~--~flScsNDg~Ir~w 205 (745)
T KOG0301|consen 138 GHTASVWAVASLPENTYVTGSA--DKTIKLWKGGTLLK----TF---S-GHTDCVRGLAVLDDS--HFLSCSNDGSIRLW 205 (745)
T ss_pred CcchheeeeeecCCCcEEeccC--cceeeeccCCchhh----hh---c-cchhheeeeEEecCC--CeEeecCCceEEEE
Confidence 3344677777767777776666 77888887655543 11 1 234689999997743 59999999999999
Q ss_pred EeCCCce--ee--ecceeEEEeccCCCEEEEEecCc-eEEEccCcccccccccCccccCCCCCCCCceeEEEEEEecCCe
Q 000733 184 GVNGPLE--DV--MDNVDAVEWSVKGKFVAVAKKNV-LSILTSKLKERLPISLSFKSWVGDCDVNCSVKVDSIRWVRRDC 258 (1324)
Q Consensus 184 dl~e~lk--~V--asgVScVcWSPKGKQLVVGlaDG-IsQyTPDgeeKkvIP~Pf~S~I~D~d~d~sV~V~SI~WLeNd~ 258 (1324)
++.++.. ++ ..-|-|++-...+.-||..+.|+ +.+|+-+ +-..+|..|- ..|=++..|.|.-
T Consensus 206 ~~~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~-e~~q~I~lPt------------tsiWsa~~L~NgD 272 (745)
T KOG0301|consen 206 DLDGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD-ECVQVITLPT------------TSIWSAKVLLNGD 272 (745)
T ss_pred eccCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC-ceEEEEecCc------------cceEEEEEeeCCC
Confidence 9965532 22 25677888778888899999999 9999865 6677888773 2466666677777
Q ss_pred EEEEEE
Q 000733 259 IIIGCF 264 (1324)
Q Consensus 259 yLFg~v 264 (1324)
+++|+.
T Consensus 273 Ivvg~S 278 (745)
T KOG0301|consen 273 IVVGGS 278 (745)
T ss_pred EEEecc
Confidence 777763
No 190
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=94.97 E-value=0.24 Score=58.04 Aligned_cols=106 Identities=14% Similarity=0.098 Sum_probs=66.7
Q ss_pred EEEEEeecCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEEEEeCCCc--eee--ecc
Q 000733 120 TLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGGVNGPL--EDV--MDN 195 (1324)
Q Consensus 120 ~LAVcaesGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl~e~l--k~V--asg 195 (1324)
+++|+....+.|.|.|..+. +...++.... ..-..++.+|+.. .+.+.+.||.|.++|+.... ..+ ..+
T Consensus 7 l~~V~~~~~~~v~viD~~t~-----~~~~~i~~~~-~~h~~~~~s~Dgr-~~yv~~rdg~vsviD~~~~~~v~~i~~G~~ 79 (369)
T PF02239_consen 7 LFYVVERGSGSVAVIDGATN-----KVVARIPTGG-APHAGLKFSPDGR-YLYVANRDGTVSVIDLATGKVVATIKVGGN 79 (369)
T ss_dssp EEEEEEGGGTEEEEEETTT------SEEEEEE-ST-TEEEEEE-TT-SS-EEEEEETTSEEEEEETTSSSEEEEEE-SSE
T ss_pred EEEEEecCCCEEEEEECCCC-----eEEEEEcCCC-CceeEEEecCCCC-EEEEEcCCCeEEEEECCcccEEEEEecCCC
Confidence 34455545689999997653 3455555543 2234466778655 45566789999999997651 222 357
Q ss_pred eeEEEeccCCCEEEEEecC-c-eEEEcc-CcccccccccC
Q 000733 196 VDAVEWSVKGKFVAVAKKN-V-LSILTS-KLKERLPISLS 232 (1324)
Q Consensus 196 VScVcWSPKGKQLVVGlaD-G-IsQyTP-DgeeKkvIP~P 232 (1324)
..+++.|++||+|+++... + +.++.. +++..+.|+..
T Consensus 80 ~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~ 119 (369)
T PF02239_consen 80 PRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTG 119 (369)
T ss_dssp EEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--
T ss_pred cceEEEcCCCCEEEEEecCCCceeEeccccccceeecccc
Confidence 7889999999999988754 5 999963 57888888765
No 191
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=94.96 E-value=0.3 Score=61.16 Aligned_cols=142 Identities=11% Similarity=0.062 Sum_probs=102.6
Q ss_pred CCCeeEEEEecCCCEEEEEeecCCeEEEEEcccccCCCCcceeEE-----ecCCCcceEEEEecCCCCCeEEEEEeCCeE
Q 000733 106 NENVDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSC-----SLNGSTYVKDIRWRKKPENSFLALSNVGRL 180 (1324)
Q Consensus 106 ~s~VshLAFSsDEs~LAVcaesGg~L~VYDV~SLlng~t~P~~si-----sLn~st~VrdLaWNP~~aslLAVVSsDGsL 180 (1324)
.+-|..||++--+-...|.+.++..|.+|+... .+++.+.... ...++..|+.++-+|+.. ++|.++.|.+-
T Consensus 411 ~~svgava~~~~~asffvsvS~D~tlK~W~l~~--s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndk-LiAT~SqDkta 487 (775)
T KOG0319|consen 411 TNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPK--SKETAFPIVLTCRYTERAHDKDINCVAIAPNDK-LIATGSQDKTA 487 (775)
T ss_pred ccccceeeecccCccEEEEecCCceEEEecCCC--cccccccceehhhHHHHhhcccccceEecCCCc-eEEecccccce
Confidence 346788888776666666666788999999887 2333332222 124567899999999776 89999999999
Q ss_pred EEEEeCCCceee------ecceeEEEeccCCCEEEEEecCc-eEEEccC-cccccccccCccccCCCCCCCCceeEEEEE
Q 000733 181 YRGGVNGPLEDV------MDNVDAVEWSVKGKFVAVAKKNV-LSILTSK-LKERLPISLSFKSWVGDCDVNCSVKVDSIR 252 (1324)
Q Consensus 181 ~Vldl~e~lk~V------asgVScVcWSPKGKQLVVGlaDG-IsQyTPD-geeKkvIP~Pf~S~I~D~d~d~sV~V~SI~ 252 (1324)
.||++... .+. .-||-||.+||.-+-|+..++|+ |.+|+-+ +.=.+++. +....|.-..
T Consensus 488 KiW~le~~-~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~e------------GH~~aVlra~ 554 (775)
T KOG0319|consen 488 KIWDLEQL-RLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFE------------GHTSAVLRAS 554 (775)
T ss_pred eeecccCc-eEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeec------------CccceeEeee
Confidence 99999743 322 36999999999999999999999 9999642 22222221 2234688888
Q ss_pred EecCCeEEEEE
Q 000733 253 WVRRDCIIIGC 263 (1324)
Q Consensus 253 WLeNd~yLFg~ 263 (1324)
.+.++..++.+
T Consensus 555 F~~~~~qliS~ 565 (775)
T KOG0319|consen 555 FIRNGKQLISA 565 (775)
T ss_pred eeeCCcEEEec
Confidence 88888777665
No 192
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=94.87 E-value=2 Score=53.58 Aligned_cols=88 Identities=10% Similarity=0.067 Sum_probs=66.2
Q ss_pred CeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEEEEeCCCce-------e----eeccee
Q 000733 129 PHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGGVNGPLE-------D----VMDNVD 197 (1324)
Q Consensus 129 g~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl~e~lk-------~----VasgVS 197 (1324)
+.+.||++.. . ..|-+.+.-. ..|.++.++|-.++++|.-+-+|++.+||+..... . +.+.|+
T Consensus 222 ~~~~vW~~~~---p-~~Pe~~~~~~--s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~ 295 (555)
T KOG1587|consen 222 GVLLVWSLKN---P-NTPELVLESP--SEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVT 295 (555)
T ss_pred ceEEEEecCC---C-CCceEEEecC--CceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeE
Confidence 3677777653 2 4554443333 57999999999999999999999999999964321 1 137889
Q ss_pred EEEeccCCCE--EEEEecCc-eEEEccC
Q 000733 198 AVEWSVKGKF--VAVAKKNV-LSILTSK 222 (1324)
Q Consensus 198 cVcWSPKGKQ--LVVGlaDG-IsQyTPD 222 (1324)
.++|=..--. ++.++.|| |..|..+
T Consensus 296 ~vvW~~~~~~~~f~s~ssDG~i~~W~~~ 323 (555)
T KOG1587|consen 296 AVVWLQNEHNTEFFSLSSDGSICSWDTD 323 (555)
T ss_pred EEEEeccCCCCceEEEecCCcEeeeecc
Confidence 9999876655 89999999 9999654
No 193
>KOG4328 consensus WD40 protein [Function unknown]
Probab=94.80 E-value=0.18 Score=60.46 Aligned_cols=118 Identities=8% Similarity=-0.007 Sum_probs=80.8
Q ss_pred eeEEEEecCCCEEEEEeecCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEEEEeCC-
Q 000733 109 VDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGGVNG- 187 (1324)
Q Consensus 109 VshLAFSsDEs~LAVcaesGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl~e- 187 (1324)
++-+-|++++..++... +=|.+++||.+.= | .-+.-+++. ...|+.++.||..+..+|.++.|+++.|||+..
T Consensus 282 fs~~d~~~e~~~vl~~~-~~G~f~~iD~R~~--~--s~~~~~~lh-~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l 355 (498)
T KOG4328|consen 282 FSSLDFSAESRSVLFGD-NVGNFNVIDLRTD--G--SEYENLRLH-KKKITSVALNPVCPWFLATASLDQTAKIWDLRQL 355 (498)
T ss_pred eeeccccCCCccEEEee-cccceEEEEeecC--C--ccchhhhhh-hcccceeecCCCCchheeecccCcceeeeehhhh
Confidence 34445566555443333 2348888988752 2 112223343 368999999999999999999999999999842
Q ss_pred --Cce-ee-----ecceeEEEeccCCCEEEEEecCc-eEEEccC-----cccccccccC
Q 000733 188 --PLE-DV-----MDNVDAVEWSVKGKFVAVAKKNV-LSILTSK-----LKERLPISLS 232 (1324)
Q Consensus 188 --~lk-~V-----asgVScVcWSPKGKQLVVGlaDG-IsQyTPD-----geeKkvIP~P 232 (1324)
... .+ .-.|.++|+||.|=.|++-+.|. |.+|... .+...+|+-+
T Consensus 356 ~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn 414 (498)
T KOG4328|consen 356 RGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHN 414 (498)
T ss_pred cCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeecc
Confidence 111 12 25789999999999999999998 9999652 3344555443
No 194
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=94.80 E-value=0.64 Score=61.12 Aligned_cols=157 Identities=13% Similarity=0.138 Sum_probs=104.7
Q ss_pred cceEeeCCcc-eEEEEEcCCc-eEEEEehHHHHHHhhcccCCcccccccceeeeecCCCCCeeEEEEecCCCEEEEEeec
Q 000733 50 LPLAVSQLSH-QLIFAAHSSG-FCVARTNDVIDAAKEMKENGTRCCVQELSVVDVPFENENVDILSLSNDESTLAVSLYQ 127 (1324)
Q Consensus 50 SLLAVSN~K~-GLvfAAgpdG-LvVarTsDLr~a~ksa~en~tv~~~~dl~vi~VPLp~s~VshLAFSsDEs~LAVcaes 127 (1324)
.-+|+++ -+ .+|+.|+.+| ++|-.+..+.... ++..+. +. +.. .++++..|.+-..+..+||+ .+
T Consensus 1052 ~k~a~s~-~~~s~FvsgS~DGtVKvW~~~k~~~~~------~s~rS~--lt-ys~--~~sr~~~vt~~~~~~~~Av~-t~ 1118 (1431)
T KOG1240|consen 1052 IKLAVSS-EHTSLFVSGSDDGTVKVWNLRKLEGEG------GSARSE--LT-YSP--EGSRVEKVTMCGNGDQFAVS-TK 1118 (1431)
T ss_pred cceeecC-CCCceEEEecCCceEEEeeehhhhcCc------ceeeee--EE-Eec--cCCceEEEEeccCCCeEEEE-cC
Confidence 4578888 77 6777777777 5555655554221 111111 11 221 23579999988888888887 57
Q ss_pred CCeEEEEEcccccCCCCcceeEEec---CCCcceEEEEecCCCCC-eEEEEEeCCeEEEEEeCCC-----c--eeeecce
Q 000733 128 SPHIHFFSVHSLLNKEIKPSFSCSL---NGSTYVKDIRWRKKPEN-SFLALSNVGRLYRGGVNGP-----L--EDVMDNV 196 (1324)
Q Consensus 128 Gg~L~VYDV~SLlng~t~P~~sisL---n~st~VrdLaWNP~~as-lLAVVSsDGsL~Vldl~e~-----l--k~VasgV 196 (1324)
+|.|+++++...............+ +.+..|...++.-...+ +++.++..|.+..||+... . ..-.+-|
T Consensus 1119 DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~v 1198 (1431)
T KOG1240|consen 1119 DGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLV 1198 (1431)
T ss_pred CCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccce
Confidence 7899999998862212222222222 34455666666655444 8889999999999998643 1 1123789
Q ss_pred eEEEeccCCCEEEEEecCc-eEEE
Q 000733 197 DAVEWSVKGKFVAVAKKNV-LSIL 219 (1324)
Q Consensus 197 ScVcWSPKGKQLVVGlaDG-IsQy 219 (1324)
+++|-+|-|.-+|+|+..| +..|
T Consensus 1199 TSi~idp~~~WlviGts~G~l~lW 1222 (1431)
T KOG1240|consen 1199 TSIVIDPWCNWLVIGTSRGQLVLW 1222 (1431)
T ss_pred eEEEecCCceEEEEecCCceEEEE
Confidence 9999999999999999999 9999
No 195
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=94.69 E-value=8.9 Score=44.40 Aligned_cols=232 Identities=17% Similarity=0.235 Sum_probs=116.5
Q ss_pred EEEEEeCCeEEEEEeCCCce-eee---------cceeEEEeccCCCEEEEEecCc-eEEEccCcccccccccCccccCCC
Q 000733 171 FLALSNVGRLYRGGVNGPLE-DVM---------DNVDAVEWSVKGKFVAVAKKNV-LSILTSKLKERLPISLSFKSWVGD 239 (1324)
Q Consensus 171 LAVVSsDGsL~Vldl~e~lk-~Va---------sgVScVcWSPKGKQLVVGlaDG-IsQyTPDgeeKkvIP~Pf~S~I~D 239 (1324)
++++..|-.|-|=..++... .+. .+=.-+||||+|..||++..+| |.+|.-.|.+-..|+.+. +-.+
T Consensus 11 ~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~p~~-~~~~- 88 (282)
T PF15492_consen 11 LLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIPPAM-SFPG- 88 (282)
T ss_pred EEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccceeEEcCccc-ccCC-
Confidence 44445566665555554422 211 2335699999999999999999 999966677778888763 1222
Q ss_pred CCCCCceeEEEEEEecCC-----eEE-EEEEeecCCCCcceeEEEEEecCCCCccCCCCCCeEEeecccccccccCCCCC
Q 000733 240 CDVNCSVKVDSIRWVRRD-----CII-IGCFQLTEDGKEENYLVQVIQSKDGKITDASSEPVVLSFSDVFSDVIDDILPS 313 (1324)
Q Consensus 240 ~d~d~sV~V~SI~WLeNd-----~yL-Fg~vysaeDgseEsYvV~IIrkKdgk~~~~~ss~tf~~F~D~~~~~~DDi~PF 313 (1324)
+....|.++..++.+ .|- ++..| +|....|+|.+-+.+. ..+-.-..|.+ -.|+
T Consensus 89 ---d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y---~G~L~Sy~vs~gt~q~------y~e~hsfsf~~--------~yp~ 148 (282)
T PF15492_consen 89 ---DLSDAIAGLIFLEYKKSAQWSYELLVINY---RGQLRSYLVSVGTNQG------YQENHSFSFSS--------HYPH 148 (282)
T ss_pred ---ccccceeeeEeeccccccccceeEEEEec---cceeeeEEEEcccCCc------ceeeEEEEecc--------cCCC
Confidence 223457777777765 333 33334 3555667763322222 11111222321 1244
Q ss_pred CCcceEEEeeeccccEEEEEecCcccceeE------EeeeccccCCCcceeeeccCCCccceeeCCCCCCCcce--eEEE
Q 000733 314 GTGPYLFLTYVERWGLAISANRKNIDDHVV------LLRWSLDDEKNDIAVVDINRDKWIPRIKLQDNGNDNLI--MGLC 385 (1324)
Q Consensus 314 GsgP~~yl~~L~dWdLL~VASSaStDIgIL------~~~W~L~D~~~~~~vlEi~DDS~RAeLPLTED~DDT~P--IGLA 385 (1324)
|-+. +++.+.-+||+|+..-..+.+.- ...|-..++ +-+=..++-.+++-.+.+ -|+-
T Consensus 149 Gi~~---~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~-----------~Pyyk~v~~~~~~~~~~~~~~~~~ 214 (282)
T PF15492_consen 149 GINS---AVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSD-----------SPYYKQVTSSEDDITASSKRRGLL 214 (282)
T ss_pred ceeE---EEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCC-----------CCcEEEccccCcccccccccccee
Confidence 4332 23344456788876665554331 023544321 111111221122111111 0110
Q ss_pred EEecCCCceeeecCCCCc-----ccC-CCceEEEEEcCCccEEEEEEEeccCCCCCCCcccc
Q 000733 386 IDKVSLCGKVKVQLGVEE-----KEL-SPYFILMCLTLDGKLNMFHVASVSGPSCSPDVDFT 441 (1324)
Q Consensus 386 LDLSSTe~kVevpIg~DE-----~eL-PPlPiL~VLTnEGvL~sw~VVnL~~~~~~p~~~~~ 441 (1324)
-+.+. +.....+.++ ..+ |-.=.|.|+...|.|+.|.|=++.....-+..+.|
T Consensus 215 -~~~~~--~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~eqP 273 (282)
T PF15492_consen 215 -RIPSF--KFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQDEQP 273 (282)
T ss_pred -eccce--eeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchhhCC
Confidence 11110 0000001011 112 45567889999999999999988876655554443
No 196
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=94.69 E-value=0.36 Score=58.53 Aligned_cols=109 Identities=11% Similarity=0.095 Sum_probs=79.9
Q ss_pred CCCeeEEEEecCCCEEEEEeecCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEEEEe
Q 000733 106 NENVDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGGV 185 (1324)
Q Consensus 106 ~s~VshLAFSsDEs~LAVcaesGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl 185 (1324)
.+.|.+|-.+|.+.+||... .||.|.+-.+.+-. .+.+| ..+.+..||-|.++|....++.+++.+|.+.+||+
T Consensus 121 ~stvt~v~YN~~DeyiAsvs-~gGdiiih~~~t~~--~tt~f---~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv 194 (673)
T KOG4378|consen 121 QSTVTYVDYNNTDEYIASVS-DGGDIIIHGTKTKQ--KTTTF---TIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDV 194 (673)
T ss_pred cceeEEEEecCCcceeEEec-cCCcEEEEecccCc--cccce---ecCCCCeEEEeecccccceeeEeeccCCeEEEEec
Confidence 35799999999888886544 47888888777532 24443 34445788999999988889999999999999999
Q ss_pred CCCc-ee-----eecceeEEEeccCCCEE-EEEecCc-eEEEc
Q 000733 186 NGPL-ED-----VMDNVDAVEWSVKGKFV-AVAKKNV-LSILT 220 (1324)
Q Consensus 186 ~e~l-k~-----VasgVScVcWSPKGKQL-VVGlaDG-IsQyT 220 (1324)
...- .+ +.....-+|+||-...| |.-+-|- |.+|.
T Consensus 195 ~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD 237 (673)
T KOG4378|consen 195 QGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYD 237 (673)
T ss_pred cCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEee
Confidence 7642 22 23455669999986655 5455555 99994
No 197
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=94.63 E-value=0.48 Score=58.94 Aligned_cols=156 Identities=11% Similarity=0.003 Sum_probs=100.6
Q ss_pred CCCcceEe-eCCcceEEEEEcCCc-eEEEEehHHHHHHhhcccCCcccccccceeeeecCCCCCeeEEEEecCCCEEEEE
Q 000733 47 PPSLPLAV-SQLSHQLIFAAHSSG-FCVARTNDVIDAAKEMKENGTRCCVQELSVVDVPFENENVDILSLSNDESTLAVS 124 (1324)
Q Consensus 47 ~~sSLLAV-SN~K~GLvfAAgpdG-LvVarTsDLr~a~ksa~en~tv~~~~dl~vi~VPLp~s~VshLAFSsDEs~LAVc 124 (1324)
+...-||+ +. ..-|++.||-++ +.|--...........-.+.+ ...+.. .+...|+.||.+..+..++.+
T Consensus 118 DYVkcla~~ak-~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t-----~~sl~s--G~k~siYSLA~N~t~t~ivsG 189 (735)
T KOG0308|consen 118 DYVKCLAYIAK-NNELVASGGLDRKIFLWDINTGTATLVASFNNVT-----VNSLGS--GPKDSIYSLAMNQTGTIIVSG 189 (735)
T ss_pred chheeeeeccc-CceeEEecCCCccEEEEEccCcchhhhhhccccc-----cccCCC--CCccceeeeecCCcceEEEec
Confidence 45677888 66 677777777666 444333322110000001111 111111 233468999999988655554
Q ss_pred eecCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEEEEeCCC-----ceeeecceeEE
Q 000733 125 LYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGGVNGP-----LEDVMDNVDAV 199 (1324)
Q Consensus 125 aesGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl~e~-----lk~VasgVScV 199 (1324)
..+ +.|+|||.++... +..+. ++-..||+|.-|++.. .++-.++||++.+||++.. ..++.++|=+.
T Consensus 190 gte-k~lr~wDprt~~k--imkLr----GHTdNVr~ll~~dDGt-~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL 261 (735)
T KOG0308|consen 190 GTE-KDLRLWDPRTCKK--IMKLR----GHTDNVRVLLVNDDGT-RLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWAL 261 (735)
T ss_pred Ccc-cceEEeccccccc--eeeee----ccccceEEEEEcCCCC-eEeecCCCceEEeeeccccceeeeEEeccCceEEE
Confidence 444 6899999987643 22222 4446799999999765 5778899999999999865 12335789888
Q ss_pred EeccCCCEEEEEecCc-eEE
Q 000733 200 EWSVKGKFVAVAKKNV-LSI 218 (1324)
Q Consensus 200 cWSPKGKQLVVGlaDG-IsQ 218 (1324)
.-+|.=+.+..|..|| |..
T Consensus 262 ~~~~sf~~vYsG~rd~~i~~ 281 (735)
T KOG0308|consen 262 QSSPSFTHVYSGGRDGNIYR 281 (735)
T ss_pred eeCCCcceEEecCCCCcEEe
Confidence 8899999999999999 543
No 198
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=94.59 E-value=0.19 Score=59.94 Aligned_cols=133 Identities=14% Similarity=0.214 Sum_probs=88.5
Q ss_pred CCCEEEEEeecCCeEEEEEcccccCCCCcceeEEe----------------c-CCCcceEEEEecCCCCCeEEEEEeCCe
Q 000733 117 DESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCS----------------L-NGSTYVKDIRWRKKPENSFLALSNVGR 179 (1324)
Q Consensus 117 DEs~LAVcaesGg~L~VYDV~SLlng~t~P~~sis----------------L-n~st~VrdLaWNP~~aslLAVVSsDGs 179 (1324)
-|+++||.... +.|.|||+. ++ ..+.|.+..- - .+...|.+|.||-...+.+|--+.|-+
T Consensus 191 ~gNyvAiGtmd-p~IeIWDLD-I~-d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~T 267 (463)
T KOG0270|consen 191 AGNYVAIGTMD-PEIEIWDLD-IV-DAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKT 267 (463)
T ss_pred CcceEEEeccC-ceeEEeccc-cc-cccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCce
Confidence 46788887765 699999976 11 1233332221 1 233457799999999999999999999
Q ss_pred EEEEEeCCC-c----eeeecceeEEEeccC-CCEEEEEecCc-eEEEccCcccccccccCccccCCCCCCCCceeEEEEE
Q 000733 180 LYRGGVNGP-L----EDVMDNVDAVEWSVK-GKFVAVAKKNV-LSILTSKLKERLPISLSFKSWVGDCDVNCSVKVDSIR 252 (1324)
Q Consensus 180 L~Vldl~e~-l----k~VasgVScVcWSPK-GKQLVVGlaDG-IsQyTPDgeeKkvIP~Pf~S~I~D~d~d~sV~V~SI~ 252 (1324)
+.+||+..+ . +.....|.|+.|.|. +..|..|+.|| +..+ |+.. ..+-...|- -+ -.|..|.
T Consensus 268 V~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~--D~R~---~~~s~~~wk----~~--g~VEkv~ 336 (463)
T KOG0270|consen 268 VKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALK--DCRD---PSNSGKEWK----FD--GEVEKVA 336 (463)
T ss_pred EEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEee--eccC---ccccCceEE----ec--cceEEEE
Confidence 999999754 1 223479999999998 56678999999 8888 4432 111112222 11 2588899
Q ss_pred EecCCeEEEEE
Q 000733 253 WVRRDCIIIGC 263 (1324)
Q Consensus 253 WLeNd~yLFg~ 263 (1324)
|-......|.+
T Consensus 337 w~~~se~~f~~ 347 (463)
T KOG0270|consen 337 WDPHSENSFFV 347 (463)
T ss_pred ecCCCceeEEE
Confidence 96554444444
No 199
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=94.49 E-value=21 Score=46.13 Aligned_cols=118 Identities=15% Similarity=0.261 Sum_probs=81.9
Q ss_pred eeecCCCCCeeEEEEe---c--CC--CEEEEEeecCCeEEEEE------cccccCC----CCcceeEEec--CCCcceEE
Q 000733 100 VDVPFENENVDILSLS---N--DE--STLAVSLYQSPHIHFFS------VHSLLNK----EIKPSFSCSL--NGSTYVKD 160 (1324)
Q Consensus 100 i~VPLp~s~VshLAFS---s--DE--s~LAVcaesGg~L~VYD------V~SLlng----~t~P~~sisL--n~st~Vrd 160 (1324)
|.+... +.|.+|.|+ . |+ .+|+|-. ...++||. +...-.. +..|+..|.. -++....|
T Consensus 74 w~i~~~-~PI~qI~fa~~~~~~~~~~~~l~Vrt--~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aD 150 (765)
T PF10214_consen 74 WSIDDG-SPIKQIKFATLSESFDEKSRWLAVRT--ETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHAD 150 (765)
T ss_pred eEcCCC-CCeeEEEecccccccCCcCcEEEEEc--CCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccce
Confidence 554433 569999998 2 32 3677666 56888888 2222211 5678888874 13478899
Q ss_pred EEecCCCCCeEEEEEeCCeEEEEEeCCC-------cee-------e-e-----cceeEEEeccCCCEEEEEecCceEEEc
Q 000733 161 IRWRKKPENSFLALSNVGRLYRGGVNGP-------LED-------V-M-----DNVDAVEWSVKGKFVAVAKKNVLSILT 220 (1324)
Q Consensus 161 LaWNP~~aslLAVVSsDGsL~Vldl~e~-------lk~-------V-a-----sgVScVcWSPKGKQLVVGlaDGIsQyT 220 (1324)
+++||....-||||...|...||++... ..+ + . ++-..++|..+-..|++....-+..|.
T Consensus 151 v~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r~~l~~~d 230 (765)
T PF10214_consen 151 VAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNRSKLMLID 230 (765)
T ss_pred EEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcCCceEEEE
Confidence 9999998889999999999999999211 111 1 0 222379999998888888777777774
No 200
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=94.48 E-value=0.73 Score=54.43 Aligned_cols=140 Identities=17% Similarity=0.215 Sum_probs=90.6
Q ss_pred CeeEEEEec-CCCEEEEEeecCCeEEEEEcccccCCCC-------cceeEEecCCCcceEEEEecCCCCCeEEEEEeCCe
Q 000733 108 NVDILSLSN-DESTLAVSLYQSPHIHFFSVHSLLNKEI-------KPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGR 179 (1324)
Q Consensus 108 ~VshLAFSs-DEs~LAVcaesGg~L~VYDV~SLlng~t-------~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGs 179 (1324)
+|.+||+-+ ..+.|+|+. -+.|-+|.+..=++-.. -+..-.+-.+...|..|+||++...++-.--.|..
T Consensus 142 nvtclawRPlsaselavgC--r~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsss 219 (445)
T KOG2139|consen 142 NVTCLAWRPLSASELAVGC--RAGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSS 219 (445)
T ss_pred ceeEEEeccCCcceeeeee--cceeEEEEcCcccccccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcce
Confidence 789999965 445677766 46799999875443211 11111111234789999999986544444456888
Q ss_pred EEEEEeCCCce--ee---ecceeEEEeccCCCEEEEEecCc-eEEEccCcccccccccCccccCCCCCCCCceeEEEEEE
Q 000733 180 LYRGGVNGPLE--DV---MDNVDAVEWSVKGKFVAVAKKNV-LSILTSKLKERLPISLSFKSWVGDCDVNCSVKVDSIRW 253 (1324)
Q Consensus 180 L~Vldl~e~lk--~V---asgVScVcWSPKGKQLVVGlaDG-IsQyTPDgeeKkvIP~Pf~S~I~D~d~d~sV~V~SI~W 253 (1324)
+.|||...+.. +. ..+++=+-|||+|..|.++.-|+ ...|- +.....+.. |+ -++-+|-.-+|
T Consensus 220 i~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~----e~q~wt~er--w~-----lgsgrvqtacW 288 (445)
T KOG2139|consen 220 IMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQ----ENQSWTKER--WI-----LGSGRVQTACW 288 (445)
T ss_pred EEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeeh----hcccceecc--ee-----ccCCceeeeee
Confidence 99999975532 22 37899999999999999999999 77771 111111211 22 11227888899
Q ss_pred ecCCeEE
Q 000733 254 VRRDCII 260 (1324)
Q Consensus 254 LeNd~yL 260 (1324)
---..|+
T Consensus 289 spcGsfL 295 (445)
T KOG2139|consen 289 SPCGSFL 295 (445)
T ss_pred cCCCCEE
Confidence 7666565
No 201
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=94.43 E-value=0.5 Score=54.92 Aligned_cols=103 Identities=14% Similarity=0.154 Sum_probs=74.3
Q ss_pred CeeEEEEecCCCEEEEEeecCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCC-CeEEEEEeCCeEEEEEeC
Q 000733 108 NVDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPE-NSFLALSNVGRLYRGGVN 186 (1324)
Q Consensus 108 ~VshLAFSsDEs~LAVcaesGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~a-slLAVVSsDGsL~Vldl~ 186 (1324)
.++.|| +++.+||... ++-.|++||++.=.+ ..- -+.+...|.+|.+.|... +-++.+..||.+.||+++
T Consensus 45 sitavA--Vs~~~~aSGs-sDetI~IYDm~k~~q--lg~----ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~ 115 (362)
T KOG0294|consen 45 SITALA--VSGPYVASGS-SDETIHIYDMRKRKQ--LGI----LLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVG 115 (362)
T ss_pred ceeEEE--ecceeEeccC-CCCcEEEEeccchhh--hcc----eeccccceEEEEecCCcchhheeeecCCCcEEEEEcC
Confidence 345554 4788877655 456899999885322 221 123446899999999764 358888999999999998
Q ss_pred CC-----ceeeecceeEEEeccCCCEEEEEecCc-eEEE
Q 000733 187 GP-----LEDVMDNVDAVEWSVKGKFVAVAKKNV-LSIL 219 (1324)
Q Consensus 187 e~-----lk~VasgVScVcWSPKGKQLVVGlaDG-IsQy 219 (1324)
.- ++-+..+|+-++-.|-||.-..-+.|+ +.-|
T Consensus 116 ~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~W 154 (362)
T KOG0294|consen 116 SWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTW 154 (362)
T ss_pred CeEEeeeecccccccceeEecCCCceEEEEcCCceeeee
Confidence 64 233457799999999999666666777 8888
No 202
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=94.38 E-value=0.052 Score=42.42 Aligned_cols=27 Identities=19% Similarity=0.578 Sum_probs=20.2
Q ss_pred ecceeEEEeccCCCEEEEEecCc-eEEE
Q 000733 193 MDNVDAVEWSVKGKFVAVAKKNV-LSIL 219 (1324)
Q Consensus 193 asgVScVcWSPKGKQLVVGlaDG-IsQy 219 (1324)
...|.|++|+|+|.+|++|..|| |.+|
T Consensus 11 ~~~i~~i~~~~~~~~~~s~~~D~~i~vw 38 (39)
T PF00400_consen 11 SSSINSIAWSPDGNFLASGSSDGTIRVW 38 (39)
T ss_dssp SSSEEEEEEETTSSEEEEEETTSEEEEE
T ss_pred CCcEEEEEEecccccceeeCCCCEEEEE
Confidence 35677777777777777777777 7776
No 203
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=94.37 E-value=0.32 Score=54.79 Aligned_cols=107 Identities=16% Similarity=0.174 Sum_probs=76.0
Q ss_pred CCCeeEEEEecCCCEEEEEeecCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEEEEe
Q 000733 106 NENVDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGGV 185 (1324)
Q Consensus 106 ~s~VshLAFSsDEs~LAVcaesGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl 185 (1324)
.+.|..|+|+-+-++++.... +..|++||.++=....++-+.+.. ..|..+.- ..+.++.-+.||+++.+|+
T Consensus 101 ~aqVNtV~fNeesSVv~Sgsf-D~s~r~wDCRS~s~ePiQildea~----D~V~Si~v---~~heIvaGS~DGtvRtydi 172 (307)
T KOG0316|consen 101 LAQVNTVRFNEESSVVASGSF-DSSVRLWDCRSRSFEPIQILDEAK----DGVSSIDV---AEHEIVAGSVDGTVRTYDI 172 (307)
T ss_pred cceeeEEEecCcceEEEeccc-cceeEEEEcccCCCCccchhhhhc----CceeEEEe---cccEEEeeccCCcEEEEEe
Confidence 458999999888776655443 468999999975433333222111 23444444 3456777899999999999
Q ss_pred CCCce--e-eecceeEEEeccCCCEEEEEecCc-eEEEc
Q 000733 186 NGPLE--D-VMDNVDAVEWSVKGKFVAVAKKNV-LSILT 220 (1324)
Q Consensus 186 ~e~lk--~-VasgVScVcWSPKGKQLVVGlaDG-IsQyT 220 (1324)
..+.. . +...|+|+|+|++|.-+.+|.-|+ |....
T Consensus 173 R~G~l~sDy~g~pit~vs~s~d~nc~La~~l~stlrLlD 211 (307)
T KOG0316|consen 173 RKGTLSSDYFGHPITSVSFSKDGNCSLASSLDSTLRLLD 211 (307)
T ss_pred ecceeehhhcCCcceeEEecCCCCEEEEeeccceeeecc
Confidence 76522 2 247999999999999999999999 77774
No 204
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=94.23 E-value=0.38 Score=55.52 Aligned_cols=106 Identities=16% Similarity=0.192 Sum_probs=78.5
Q ss_pred CCeeEEEEecCCCEEEEEeecCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEEEEeC
Q 000733 107 ENVDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGGVN 186 (1324)
Q Consensus 107 s~VshLAFSsDEs~LAVcaesGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl~ 186 (1324)
..|+-|.|++....|+|+. =+|.|.+|++.+.... ..+..+.+|.+.++-+ ....++...||.|+++|+.
T Consensus 14 d~IS~v~f~~~~~~LLvss-WDgslrlYdv~~~~l~-------~~~~~~~plL~c~F~d--~~~~~~G~~dg~vr~~Dln 83 (323)
T KOG1036|consen 14 DGISSVKFSPSSSDLLVSS-WDGSLRLYDVPANSLK-------LKFKHGAPLLDCAFAD--ESTIVTGGLDGQVRRYDLN 83 (323)
T ss_pred hceeeEEEcCcCCcEEEEe-ccCcEEEEeccchhhh-------hheecCCceeeeeccC--CceEEEeccCceEEEEEec
Confidence 3789999986555554444 2689999999976321 1122456788888865 2357778899999999997
Q ss_pred CCcee----eecceeEEEeccCCCEEEEEecCc-eEEEccC
Q 000733 187 GPLED----VMDNVDAVEWSVKGKFVAVAKKNV-LSILTSK 222 (1324)
Q Consensus 187 e~lk~----VasgVScVcWSPKGKQLVVGlaDG-IsQyTPD 222 (1324)
.+... +..+|.|++.++--..+++|+=|+ |..|.|-
T Consensus 84 ~~~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R 124 (323)
T KOG1036|consen 84 TGNEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPR 124 (323)
T ss_pred CCcceeeccCCCceEEEEeeccCCeEEEcccCccEEEEecc
Confidence 65332 247999999998877899999999 9999763
No 205
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=94.22 E-value=1.1 Score=52.17 Aligned_cols=150 Identities=14% Similarity=0.097 Sum_probs=96.0
Q ss_pred CCcceEeeCCcceEEEEEcCCceEEEEeh-HHHHHHhhcccCCcccccccceeeeecCCCCCeeEEEEecCCCEEEEEe-
Q 000733 48 PSLPLAVSQLSHQLIFAAHSSGFCVARTN-DVIDAAKEMKENGTRCCVQELSVVDVPFENENVDILSLSNDESTLAVSL- 125 (1324)
Q Consensus 48 ~sSLLAVSN~K~GLvfAAgpdGLvVarTs-DLr~a~ksa~en~tv~~~~dl~vi~VPLp~s~VshLAFSsDEs~LAVca- 125 (1324)
.....+|-= ++..+++...+.+.|++-. +++... ..+ +..-+-.+| .-.|. -+..|.|+=
T Consensus 94 ~~~I~~V~l-~r~riVvvl~~~I~VytF~~n~k~l~-~~e---t~~NPkGlC-~~~~~------------~~k~~LafPg 155 (346)
T KOG2111|consen 94 NSEIKAVKL-RRDRIVVVLENKIYVYTFPDNPKLLH-VIE---TRSNPKGLC-SLCPT------------SNKSLLAFPG 155 (346)
T ss_pred ccceeeEEE-cCCeEEEEecCeEEEEEcCCChhhee-eee---cccCCCceE-eecCC------------CCceEEEcCC
Confidence 466677777 7788888888888877544 443221 110 100011122 11111 223344443
Q ss_pred ecCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeE-EEEEeCCCceee-------eccee
Q 000733 126 YQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRL-YRGGVNGPLEDV-------MDNVD 197 (1324)
Q Consensus 126 esGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL-~Vldl~e~lk~V-------asgVS 197 (1324)
..-|.|++-|+.+..-+ .|+. |. .+...|.+++-|-. ..++|.++..|+| +|||...+.++. ...+-
T Consensus 156 ~k~GqvQi~dL~~~~~~--~p~~-I~-AH~s~Iacv~Ln~~-Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy 230 (346)
T KOG2111|consen 156 FKTGQVQIVDLASTKPN--APSI-IN-AHDSDIACVALNLQ-GTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIY 230 (346)
T ss_pred CccceEEEEEhhhcCcC--CceE-EE-cccCceeEEEEcCC-ccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEE
Confidence 23578999988876532 2332 22 34478999999874 4589999999998 899987663332 26788
Q ss_pred EEEeccCCCEEEEEecCc-eEEEc
Q 000733 198 AVEWSVKGKFVAVAKKNV-LSILT 220 (1324)
Q Consensus 198 cVcWSPKGKQLVVGlaDG-IsQyT 220 (1324)
|+++||++..||+.+.-| |.+|.
T Consensus 231 ~iaFSp~~s~LavsSdKgTlHiF~ 254 (346)
T KOG2111|consen 231 CIAFSPNSSWLAVSSDKGTLHIFS 254 (346)
T ss_pred EEEeCCCccEEEEEcCCCeEEEEE
Confidence 999999999999999999 88884
No 206
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=94.22 E-value=0.99 Score=49.21 Aligned_cols=123 Identities=18% Similarity=0.182 Sum_probs=77.0
Q ss_pred cCCCEEEEEeecCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEEEEeCCC--ce---
Q 000733 116 NDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGGVNGP--LE--- 190 (1324)
Q Consensus 116 sDEs~LAVcaesGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl~e~--lk--- 190 (1324)
..+..|+++.+ +| |++|++. ....+...... ..|.++.-.|..+ ++++..||.|+++++..- ..
T Consensus 5 ~~~~~L~vGt~-~G-l~~~~~~----~~~~~~~i~~~---~~I~ql~vl~~~~--~llvLsd~~l~~~~L~~l~~~~~~~ 73 (275)
T PF00780_consen 5 SWGDRLLVGTE-DG-LYVYDLS----DPSKPTRILKL---SSITQLSVLPELN--LLLVLSDGQLYVYDLDSLEPVSTSA 73 (275)
T ss_pred cCCCEEEEEEC-CC-EEEEEec----CCccceeEeec---ceEEEEEEecccC--EEEEEcCCccEEEEchhhccccccc
Confidence 35667888753 33 9999982 12222222222 3489999988765 444556799999998521 11
Q ss_pred ------------ee--ecceeEEE---eccCCCEEEEEecCceEEEccC-----c-ccccccccCccccCCCCCCCCcee
Q 000733 191 ------------DV--MDNVDAVE---WSVKGKFVAVAKKNVLSILTSK-----L-KERLPISLSFKSWVGDCDVNCSVK 247 (1324)
Q Consensus 191 ------------~V--asgVScVc---WSPKGKQLVVGlaDGIsQyTPD-----g-eeKkvIP~Pf~S~I~D~d~d~sV~ 247 (1324)
.+ ..+|..+| ....+..|+++.+..|.+|.+. + ...++|..|. .
T Consensus 74 ~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~-------------~ 140 (275)
T PF00780_consen 74 PLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPD-------------P 140 (275)
T ss_pred cccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCC-------------C
Confidence 11 25788888 6777889999999885555443 2 3445555552 4
Q ss_pred EEEEEEecCCeEEEEE
Q 000733 248 VDSIRWVRRDCIIIGC 263 (1324)
Q Consensus 248 V~SI~WLeNd~yLFg~ 263 (1324)
+.+|.|+.+. +.|++
T Consensus 141 ~~~i~~~~~~-i~v~~ 155 (275)
T PF00780_consen 141 PSSIAFLGNK-ICVGT 155 (275)
T ss_pred cEEEEEeCCE-EEEEe
Confidence 8899999663 44444
No 207
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=94.20 E-value=0.15 Score=62.86 Aligned_cols=103 Identities=16% Similarity=0.131 Sum_probs=76.8
Q ss_pred ecCCCEEEEEeecCCeEEEEEcccccCC-CCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEEEEeCCC----c
Q 000733 115 SNDESTLAVSLYQSPHIHFFSVHSLLNK-EIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGGVNGP----L 189 (1324)
Q Consensus 115 SsDEs~LAVcaesGg~L~VYDV~SLlng-~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl~e~----l 189 (1324)
...+-+|++..|. |.|.+||+..+.-. +...|..+.. +...|-|++|=| ....|+-.+-|-++.+||++.. .
T Consensus 61 ~n~eHiLavadE~-G~i~l~dt~~~~fr~ee~~lk~~~a-H~nAifDl~wap-ge~~lVsasGDsT~r~Wdvk~s~l~G~ 137 (720)
T KOG0321|consen 61 PNKEHILAVADED-GGIILFDTKSIVFRLEERQLKKPLA-HKNAIFDLKWAP-GESLLVSASGDSTIRPWDVKTSRLVGG 137 (720)
T ss_pred CCccceEEEecCC-Cceeeecchhhhcchhhhhhccccc-ccceeEeeccCC-CceeEEEccCCceeeeeeeccceeecc
Confidence 3567789998877 57999999988654 3333444333 345799999999 4456777788999999999764 1
Q ss_pred eee---ecceeEEEeccCCCEE-EEEecCc-eEEEc
Q 000733 190 EDV---MDNVDAVEWSVKGKFV-AVAKKNV-LSILT 220 (1324)
Q Consensus 190 k~V---asgVScVcWSPKGKQL-VVGlaDG-IsQyT 220 (1324)
.+. ..-|.++|+.|..+-+ |.|+.|| |.+|.
T Consensus 138 ~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD 173 (720)
T KOG0321|consen 138 RLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWD 173 (720)
T ss_pred eeecccccccchhhhccCCCcceeeccCCCcEEEEE
Confidence 111 3578899999998865 7899999 99993
No 208
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=94.19 E-value=0.68 Score=55.80 Aligned_cols=161 Identities=11% Similarity=0.126 Sum_probs=99.0
Q ss_pred CCcceEeeCCcceEEEEEcCCce-EEEEehHHHHHHhhcccCCcccccccceeee-ecCCCCCeeEEEEecC--CCEEEE
Q 000733 48 PSLPLAVSQLSHQLIFAAHSSGF-CVARTNDVIDAAKEMKENGTRCCVQELSVVD-VPFENENVDILSLSND--ESTLAV 123 (1324)
Q Consensus 48 ~sSLLAVSN~K~GLvfAAgpdGL-vVarTsDLr~a~ksa~en~tv~~~~dl~vi~-VPLp~s~VshLAFSsD--Es~LAV 123 (1324)
.-.-|-.+. .--++|.|+.||. .|-.+.+|.++.... .+. | ++.+. =-++ |+-+-.... ..+|+.
T Consensus 125 ~ITcL~fs~-dgs~iiTgskDg~V~vW~l~~lv~a~~~~----~~~--p-~~~f~~Htls---ITDl~ig~Gg~~~rl~T 193 (476)
T KOG0646|consen 125 SITCLKFSD-DGSHIITGSKDGAVLVWLLTDLVSADNDH----SVK--P-LHIFSDHTLS---ITDLQIGSGGTNARLYT 193 (476)
T ss_pred ceeEEEEeC-CCcEEEecCCCccEEEEEEEeecccccCC----Ccc--c-eeeeccCcce---eEEEEecCCCccceEEE
Confidence 334455677 6778888988884 445777777654321 111 1 11111 1122 443333322 233433
Q ss_pred EeecCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEEEEeCCCc--------e-----
Q 000733 124 SLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGGVNGPL--------E----- 190 (1324)
Q Consensus 124 caesGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl~e~l--------k----- 190 (1324)
+.+ +-.+.+||+... .-+.++... ..+.+++-.|.-. .+-+-+.+|.+++.++.... +
T Consensus 194 aS~-D~t~k~wdlS~g-----~LLlti~fp--~si~av~lDpae~-~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~ 264 (476)
T KOG0646|consen 194 ASE-DRTIKLWDLSLG-----VLLLTITFP--SSIKAVALDPAER-VVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEE 264 (476)
T ss_pred ecC-CceEEEEEeccc-----eeeEEEecC--CcceeEEEccccc-EEEecCCcceEEeeehhcCCcccccccccccccc
Confidence 332 578999998853 223344443 4688888888554 56677999999998874211 0
Q ss_pred ------ee--e--cceeEEEeccCCCEEEEEecCc-eEEEccCcccccccc
Q 000733 191 ------DV--M--DNVDAVEWSVKGKFVAVAKKNV-LSILTSKLKERLPIS 230 (1324)
Q Consensus 191 ------~V--a--sgVScVcWSPKGKQLVVGlaDG-IsQyTPDgeeKkvIP 230 (1324)
.+ . ..|+|++-|.+|..|+.|..|| +.+|.+ ..+.+|.
T Consensus 265 ~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi--~S~Q~iR 313 (476)
T KOG0646|consen 265 NTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDI--YSKQCIR 313 (476)
T ss_pred cceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEec--chHHHHH
Confidence 00 1 3899999999999999999999 999943 4444443
No 209
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=94.16 E-value=1.9 Score=50.76 Aligned_cols=163 Identities=12% Similarity=0.210 Sum_probs=105.1
Q ss_pred CCCCCcceEeeCCcceEEEEEc--CCceEEEEehHHHHHHhhc--ccCCccc--ccccceeeeecCCCCCeeEEEEecCC
Q 000733 45 QNPPSLPLAVSQLSHQLIFAAH--SSGFCVARTNDVIDAAKEM--KENGTRC--CVQELSVVDVPFENENVDILSLSNDE 118 (1324)
Q Consensus 45 P~~~sSLLAVSN~K~GLvfAAg--pdGLvVarTsDLr~a~ksa--~en~tv~--~~~dl~vi~VPLp~s~VshLAFSsDE 118 (1324)
+..+..-++++- ..-++|+|. ..-+.|.++.+= ...... ....+.. -.++ . ..-++..-|++|+
T Consensus 87 ~g~~p~yvsvd~-~g~~vf~AnY~~g~v~v~p~~~d-G~l~~~v~~~~h~g~~p~~rQ-----~---~~h~H~a~~tP~~ 156 (346)
T COG2706 87 PGSPPCYVSVDE-DGRFVFVANYHSGSVSVYPLQAD-GSLQPVVQVVKHTGSGPHERQ-----E---SPHVHSANFTPDG 156 (346)
T ss_pred CCCCCeEEEECC-CCCEEEEEEccCceEEEEEcccC-CccccceeeeecCCCCCCccc-----c---CCccceeeeCCCC
Confidence 333446788888 776888884 444666655331 000000 0000000 0111 0 0138888999999
Q ss_pred CEEEEEeecCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEEEEeCCC---c---eee
Q 000733 119 STLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGGVNGP---L---EDV 192 (1324)
Q Consensus 119 s~LAVcaesGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl~e~---l---k~V 192 (1324)
.+|+||.-.--.|.+|++. .|...|.....+.++..-|-|++.|+..=.++++=-++++.||.++.. + +.+
T Consensus 157 ~~l~v~DLG~Dri~~y~~~---dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i 233 (346)
T COG2706 157 RYLVVPDLGTDRIFLYDLD---DGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTI 233 (346)
T ss_pred CEEEEeecCCceEEEEEcc---cCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeee
Confidence 9999999544489999988 565666665556666778999999988766777777999999999753 1 111
Q ss_pred ---------ecceeEEEeccCCCEEEEEecCc--eEEEc
Q 000733 193 ---------MDNVDAVEWSVKGKFVAVAKKNV--LSILT 220 (1324)
Q Consensus 193 ---------asgVScVcWSPKGKQLVVGlaDG--IsQyT 220 (1324)
..++.++--|++|+.|.+...-- |..|+
T Consensus 234 ~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~ 272 (346)
T COG2706 234 DTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFS 272 (346)
T ss_pred ccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEE
Confidence 15778899999999997543322 77775
No 210
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=94.11 E-value=0.61 Score=55.18 Aligned_cols=146 Identities=14% Similarity=0.223 Sum_probs=99.3
Q ss_pred CCeeEEEEecCCCEEEEEeecCCeEEEEEcc--------cccC------------CCCcceeEEecCCCcceEEEEecCC
Q 000733 107 ENVDILSLSNDESTLAVSLYQSPHIHFFSVH--------SLLN------------KEIKPSFSCSLNGSTYVKDIRWRKK 166 (1324)
Q Consensus 107 s~VshLAFSsDEs~LAVcaesGg~L~VYDV~--------SLln------------g~t~P~~sisLn~st~VrdLaWNP~ 166 (1324)
..|..|+...|++..+.+.- +..|.||++. +..+ +...|+..+. ++-..|-++.|++
T Consensus 194 ~~V~sVsv~~sgtr~~SgS~-D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~-GHt~~Vs~V~w~d- 270 (423)
T KOG0313|consen 194 RSVDSVSVDSSGTRFCSGSW-DTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLE-GHTEPVSSVVWSD- 270 (423)
T ss_pred cceeEEEecCCCCeEEeecc-cceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEec-ccccceeeEEEcC-
Confidence 36888999999997644332 5689999932 1111 1233443221 3347899999998
Q ss_pred CCCeEEEEEeCCeEEEEEeCCC-ce-ee--ecceeEEEeccCCCEEEEEecCc-eEEEccCcccccccccCccccCCCCC
Q 000733 167 PENSFLALSNVGRLYRGGVNGP-LE-DV--MDNVDAVEWSVKGKFVAVAKKNV-LSILTSKLKERLPISLSFKSWVGDCD 241 (1324)
Q Consensus 167 ~aslLAVVSsDGsL~Vldl~e~-lk-~V--asgVScVcWSPKGKQLVVGlaDG-IsQyTPDgeeKkvIP~Pf~S~I~D~d 241 (1324)
+..+.-|+-|-+|.+||+..+ .+ .+ .-...|++-+|+-+.|++|+.|- |..|.|--.....+...+ +
T Consensus 271 -~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~---~---- 342 (423)
T KOG0313|consen 271 -ATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSL---I---- 342 (423)
T ss_pred -CCceEeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEee---e----
Confidence 556778899999999999643 21 22 24678999999999999999999 999998533333332222 1
Q ss_pred CCCceeEEEEEEecCCeEEEEEE
Q 000733 242 VNCSVKVDSIRWVRRDCIIIGCF 264 (1324)
Q Consensus 242 ~d~sV~V~SI~WLeNd~yLFg~v 264 (1324)
...--|.++.|-..+.|+|...
T Consensus 343 -gH~nwVssvkwsp~~~~~~~S~ 364 (423)
T KOG0313|consen 343 -GHKNWVSSVKWSPTNEFQLVSG 364 (423)
T ss_pred -cchhhhhheecCCCCceEEEEE
Confidence 1122578889988888887765
No 211
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=94.03 E-value=0.3 Score=57.39 Aligned_cols=110 Identities=8% Similarity=0.086 Sum_probs=86.1
Q ss_pred CCCeeEEEEecCCCEEEEEeecCCeEEEEEcccccCCCCcceeEEec-CCCcceEEEEecCCCCCeEEEEEeCCeEEEEE
Q 000733 106 NENVDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSL-NGSTYVKDIRWRKKPENSFLALSNVGRLYRGG 184 (1324)
Q Consensus 106 ~s~VshLAFSsDEs~LAVcaesGg~L~VYDV~SLlng~t~P~~sisL-n~st~VrdLaWNP~~aslLAVVSsDGsL~Vld 184 (1324)
.+=|.+||+-+-+..++.... +..|.+||+.+-.-+ .++ ++-..|+.++.++-.+ .+..|..|+.+.+||
T Consensus 151 lgWVr~vavdP~n~wf~tgs~-DrtikIwDlatg~Lk-------ltltGhi~~vr~vavS~rHp-YlFs~gedk~VKCwD 221 (460)
T KOG0285|consen 151 LGWVRSVAVDPGNEWFATGSA-DRTIKIWDLATGQLK-------LTLTGHIETVRGVAVSKRHP-YLFSAGEDKQVKCWD 221 (460)
T ss_pred cceEEEEeeCCCceeEEecCC-CceeEEEEcccCeEE-------EeecchhheeeeeeecccCc-eEEEecCCCeeEEEe
Confidence 346889999999998877664 468999999874332 122 2336899999999766 566788999999999
Q ss_pred eCCCceee------ecceeEEEeccCCCEEEEEecCc-eEEEccCccccc
Q 000733 185 VNGPLEDV------MDNVDAVEWSVKGKFVAVAKKNV-LSILTSKLKERL 227 (1324)
Q Consensus 185 l~e~lk~V------asgVScVcWSPKGKQLVVGlaDG-IsQyTPDgeeKk 227 (1324)
+..+ ++| .++|-|++--|-=.-|+.|..|. +.+| |+..+.
T Consensus 222 Le~n-kvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvW--DiRtr~ 268 (460)
T KOG0285|consen 222 LEYN-KVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVW--DIRTRA 268 (460)
T ss_pred chhh-hhHHHhccccceeEEEeccccceeEEecCCcceEEEe--eecccc
Confidence 9765 433 48999999999999999999999 9999 554444
No 212
>PRK13616 lipoprotein LpqB; Provisional
Probab=93.98 E-value=0.54 Score=58.61 Aligned_cols=137 Identities=14% Similarity=0.213 Sum_probs=79.0
Q ss_pred CeeEEEEecCCCEEEEEee-----cC--CeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEE-----
Q 000733 108 NVDILSLSNDESTLAVSLY-----QS--PHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALS----- 175 (1324)
Q Consensus 108 ~VshLAFSsDEs~LAVcae-----sG--g~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVS----- 175 (1324)
.+...++|+||..+|.... .+ ..|.+++. .+...++. . +..+..-.|+|+.. .++++.
T Consensus 351 ~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~----gg~~~~lt----~-g~~~t~PsWspDG~-~lw~v~dg~~~ 420 (591)
T PRK13616 351 NITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL----GGVAVQVL----E-GHSLTRPSWSLDAD-AVWVVVDGNTV 420 (591)
T ss_pred CcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC----CCcceeee----c-CCCCCCceECCCCC-ceEEEecCcce
Confidence 5788999999998866662 12 24555553 23334432 1 23477788999743 233332
Q ss_pred -------eCCeEEEEEeCCC-ce-eeecceeEEEeccCCCEEEEEecCc-eEE---Ecc-CcccccccccCccccCCCCC
Q 000733 176 -------NVGRLYRGGVNGP-LE-DVMDNVDAVEWSVKGKFVAVAKKNV-LSI---LTS-KLKERLPISLSFKSWVGDCD 241 (1324)
Q Consensus 176 -------sDGsL~Vldl~e~-lk-~VasgVScVcWSPKGKQLVVGlaDG-IsQ---yTP-DgeeKkvIP~Pf~S~I~D~d 241 (1324)
..|.|++.++..+ .. .+..+|+.+.|||+|++||+-. .| |.+ -.. +|+ ..+..|. .+.. .
T Consensus 421 ~~v~~~~~~gql~~~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~--~~l~~~~--~l~~-~ 494 (591)
T PRK13616 421 VRVIRDPATGQLARTPVDASAVASRVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQ--YALTNPR--EVGP-G 494 (591)
T ss_pred EEEeccCCCceEEEEeccCchhhhccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCc--eeecccE--Eeec-c
Confidence 2356776666432 11 3346799999999999999866 46 544 222 343 3343331 0110 0
Q ss_pred CCCceeEEEEEEecCCeEEEE
Q 000733 242 VNCSVKVDSIRWVRRDCIIIG 262 (1324)
Q Consensus 242 ~d~sV~V~SI~WLeNd~yLFg 262 (1324)
.+ -.+.++.|...+.++++
T Consensus 495 l~--~~~~~l~W~~~~~L~V~ 513 (591)
T PRK13616 495 LG--DTAVSLDWRTGDSLVVG 513 (591)
T ss_pred cC--CccccceEecCCEEEEE
Confidence 11 13678999998875544
No 213
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=93.96 E-value=0.15 Score=58.53 Aligned_cols=92 Identities=17% Similarity=0.245 Sum_probs=57.8
Q ss_pred ecCCCEEEEEeec--------CCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEEEEeC
Q 000733 115 SNDESTLAVSLYQ--------SPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGGVN 186 (1324)
Q Consensus 115 SsDEs~LAVcaes--------Gg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl~ 186 (1324)
|+|+.++++.... .+.+.+||+.+ +...++..- ...+....|+|+. +.+|.| .++.|++.++.
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~---~~~~~l~~~----~~~~~~~~~sP~g-~~~~~v-~~~nly~~~~~ 71 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIET---GEITPLTPP----PPKLQDAKWSPDG-KYIAFV-RDNNLYLRDLA 71 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTT---TEEEESS-E----ETTBSEEEE-SSS-TEEEEE-ETTEEEEESST
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCC---CceEECcCC----ccccccceeecCC-CeeEEE-ecCceEEEECC
Confidence 6788888774421 45778888776 334444321 2468899999984 456655 47899999875
Q ss_pred CCc-e-ee--------------------ecceeEEEeccCCCEEEEEecCc
Q 000733 187 GPL-E-DV--------------------MDNVDAVEWSVKGKFVAVAKKNV 215 (1324)
Q Consensus 187 e~l-k-~V--------------------asgVScVcWSPKGKQLVVGlaDG 215 (1324)
.+. . +. ...-.++-|||+|++||...-|-
T Consensus 72 ~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~ 122 (353)
T PF00930_consen 72 TGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDE 122 (353)
T ss_dssp TSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-
T ss_pred CCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECC
Confidence 431 1 11 12346899999999999877664
No 214
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=93.95 E-value=0.5 Score=58.37 Aligned_cols=169 Identities=9% Similarity=0.145 Sum_probs=107.4
Q ss_pred CCCCCcceEeeCCcceEEEEEc--CCceEEEEehHHHHHHhhcc-cCC-c----cc----ccccceeeeecCCCCCeeEE
Q 000733 45 QNPPSLPLAVSQLSHQLIFAAH--SSGFCVARTNDVIDAAKEMK-ENG-T----RC----CVQELSVVDVPFENENVDIL 112 (1324)
Q Consensus 45 P~~~sSLLAVSN~K~GLvfAAg--pdGLvVarTsDLr~a~ksa~-en~-t----v~----~~~dl~vi~VPLp~s~VshL 112 (1324)
|.....+|||+. ---++++-. ++.+.+..|+++........ ++. + .. -...+| +.+-.+ ..|.+|
T Consensus 451 P~~~~~vLAvA~-~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~-~~I~~~-k~i~~v 527 (733)
T KOG0650|consen 451 PLSDLCVLAVAV-GECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVC-IVIKHP-KSIRQV 527 (733)
T ss_pred CCCCceeEEEEe-cCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceE-EEEecC-Ccccee
Confidence 556778999998 444555543 34566777888865441111 000 0 00 001123 333333 468999
Q ss_pred EEecCCCEEEEEeecC--CeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEEEEeCCC--
Q 000733 113 SLSNDESTLAVSLYQS--PHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGGVNGP-- 188 (1324)
Q Consensus 113 AFSsDEs~LAVcaesG--g~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl~e~-- 188 (1324)
....+|.|||+.+-.+ -.|.|+++.--. .-.||.. . ...|..++|-|..+ +.+|.+-..++|+|+...
T Consensus 528 tWHrkGDYlatV~~~~~~~~VliHQLSK~~--sQ~PF~k---s-kG~vq~v~FHPs~p--~lfVaTq~~vRiYdL~kqel 599 (733)
T KOG0650|consen 528 TWHRKGDYLATVMPDSGNKSVLIHQLSKRK--SQSPFRK---S-KGLVQRVKFHPSKP--YLFVATQRSVRIYDLSKQEL 599 (733)
T ss_pred eeecCCceEEEeccCCCcceEEEEeccccc--ccCchhh---c-CCceeEEEecCCCc--eEEEEeccceEEEehhHHHH
Confidence 9999999999888442 366666655322 2245532 2 25789999999765 444555678999999654
Q ss_pred ceeee---cceeEEEeccCCCEEEEEecCc-eEEEccCcc
Q 000733 189 LEDVM---DNVDAVEWSVKGKFVAVAKKNV-LSILTSKLK 224 (1324)
Q Consensus 189 lk~Va---sgVScVcWSPKGKQLVVGlaDG-IsQyTPDge 224 (1324)
++.+. --++.++-+|.|.-|++|+.|+ +..|.-++.
T Consensus 600 vKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldls 639 (733)
T KOG0650|consen 600 VKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLS 639 (733)
T ss_pred HHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccC
Confidence 22222 3678899999999999999999 999965554
No 215
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=93.85 E-value=0.5 Score=59.25 Aligned_cols=163 Identities=10% Similarity=0.072 Sum_probs=98.9
Q ss_pred CCCCcceEeeCCcceEEEEEcCCceEEEEehHHHHHHhhcccCCcccccccceeeeecCCCCCeeEEEEecCCCEEEEEe
Q 000733 46 NPPSLPLAVSQLSHQLIFAAHSSGFCVARTNDVIDAAKEMKENGTRCCVQELSVVDVPFENENVDILSLSNDESTLAVSL 125 (1324)
Q Consensus 46 ~~~sSLLAVSN~K~GLvfAAgpdGLvVarTsDLr~a~ksa~en~tv~~~~dl~vi~VPLp~s~VshLAFSsDEs~LAVca 125 (1324)
.-..+-||+.. .-||++.-.+--|+++..+.-- ....+ ..--.+ ++.||||.||.|||..-
T Consensus 37 v~~~~gLa~~p-~Sgl~aYpAGCvVVlfn~~~~t-------Q~hlv--------nssRk~---~t~vAfS~~GryvatGE 97 (1080)
T KOG1408|consen 37 VKNANGLASVP-CSGLCAYPAGCVVVLFNVDSCT-------QSHLV--------NSSRKP---LTCVAFSQNGRYVATGE 97 (1080)
T ss_pred eecCCcccccc-cccceeeccCcEEEEEcccccc-------hhhee--------cccCcc---eeEEEEcCCCcEEEecc
Confidence 34677888888 8888877666666666322111 01111 111123 89999999999987643
Q ss_pred e-cCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCe--EEEEEeCCC----ceeeecceeE
Q 000733 126 Y-QSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGR--LYRGGVNGP----LEDVMDNVDA 198 (1324)
Q Consensus 126 e-sGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGs--L~Vldl~e~----lk~VasgVSc 198 (1324)
- ..+.+.||++..= +...-|-. +.-.|.+++|+|... .+.-|..--. +-|||-..+ ...|.+.|++
T Consensus 98 cG~~pa~kVw~la~h--~vVAEfvd----HKY~vtcvaFsp~~k-yvvSVGsQHDMIVnv~dWr~N~~~asnkiss~Vsa 170 (1080)
T KOG1408|consen 98 CGRTPASKVWSLAFH--GVVAEFVD----HKYNVTCVAFSPGNK-YVVSVGSQHDMIVNVNDWRVNSSGASNKISSVVSA 170 (1080)
T ss_pred cCCCccceeeeeccc--cchhhhhh----ccccceeeeecCCCc-EEEeeccccceEEEhhhhhhcccccccccceeEEE
Confidence 1 3578999998742 32333322 223588999999655 3333322221 233332222 2345689999
Q ss_pred EEeccCCCEEEEEecCceEEEccCcc--cccccccCcc
Q 000733 199 VEWSVKGKFVAVAKKNVLSILTSKLK--ERLPISLSFK 234 (1324)
Q Consensus 199 VcWSPKGKQLVVGlaDGIsQyTPDge--eKkvIP~Pf~ 234 (1324)
||+|-+|.+.|....--|..|--++. -+..||.|-+
T Consensus 171 v~fsEdgSYfvT~gnrHvk~wyl~~~~KykdpiPl~gR 208 (1080)
T KOG1408|consen 171 VAFSEDGSYFVTSGNRHVKLWYLQIQSKYKDPIPLPGR 208 (1080)
T ss_pred EEEccCCceeeeeeeeeEEEEEeeccccccCCccccch
Confidence 99999999999876666777754433 3556777643
No 216
>PRK04043 tolB translocation protein TolB; Provisional
Probab=93.81 E-value=0.28 Score=58.40 Aligned_cols=112 Identities=13% Similarity=0.102 Sum_probs=70.2
Q ss_pred EEEEecCCCEEEEEeecCC--eEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeC---------Ce
Q 000733 111 ILSLSNDESTLAVSLYQSP--HIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNV---------GR 179 (1324)
Q Consensus 111 hLAFSsDEs~LAVcaesGg--~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsD---------Gs 179 (1324)
.-.|++||..|+.....++ .|+++++.. |..+.+ ...+ .. ...|+|+.. .+|.+... ..
T Consensus 281 ~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~---g~~~rl---t~~g-~~--~~~~SPDG~-~Ia~~~~~~~~~~~~~~~~ 350 (419)
T PRK04043 281 NGNFVEDDKRIVFVSDRLGYPNIFMKKLNS---GSVEQV---VFHG-KN--NSSVSTYKN-YIVYSSRETNNEFGKNTFN 350 (419)
T ss_pred ccEECCCCCEEEEEECCCCCceEEEEECCC---CCeEeC---ccCC-Cc--CceECCCCC-EEEEEEcCCCcccCCCCcE
Confidence 3479999998888775433 555555542 333222 1122 22 358999765 46655543 37
Q ss_pred EEEEEeCCC-ceeee-c-ceeEEEeccCCCEEEEEecCc----eEEEccCcccccccccC
Q 000733 180 LYRGGVNGP-LEDVM-D-NVDAVEWSVKGKFVAVAKKNV----LSILTSKLKERLPISLS 232 (1324)
Q Consensus 180 L~Vldl~e~-lk~Va-s-gVScVcWSPKGKQLVVGlaDG----IsQyTPDgeeKkvIP~P 232 (1324)
|++.|+..+ .+.+. . ......|||+|+.|++....| |..+.-++..+..++.+
T Consensus 351 I~v~d~~~g~~~~LT~~~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~~~~~l~~~ 410 (419)
T PRK04043 351 LYLISTNSDYIRRLTANGVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYNKSFLFPLK 410 (419)
T ss_pred EEEEECCCCCeEECCCCCCcCCeEECCCCCEEEEEEccCCcEEEEEEecCCCeeEEeecC
Confidence 899998644 33332 1 223589999999999887664 66777777767666653
No 217
>PRK04043 tolB translocation protein TolB; Provisional
Probab=93.68 E-value=0.77 Score=54.76 Aligned_cols=107 Identities=11% Similarity=0.044 Sum_probs=66.1
Q ss_pred eEEEEecCCCE-EEE-Eeec-CCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeC--CeEEEEE
Q 000733 110 DILSLSNDEST-LAV-SLYQ-SPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNV--GRLYRGG 184 (1324)
Q Consensus 110 shLAFSsDEs~-LAV-caes-Gg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsD--GsL~Vld 184 (1324)
..-.+|+|+.. ++. ..+. .+.|++||+.+ |..+.+.. . ........|+|+....+.+...+ ..|++++
T Consensus 191 ~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~t---g~~~~lt~---~-~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d 263 (419)
T PRK04043 191 IFPKWANKEQTAFYYTSYGERKPTLYKYNLYT---GKKEKIAS---S-QGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYD 263 (419)
T ss_pred EeEEECCCCCcEEEEEEccCCCCEEEEEECCC---CcEEEEec---C-CCcEEeeEECCCCCEEEEEEccCCCcEEEEEE
Confidence 35688999985 443 3332 57888888643 55555442 1 13455678999766544444434 5688889
Q ss_pred eCCC-ceeee--c-ceeEEEeccCCCEEEEEecC-c---eEEEccCc
Q 000733 185 VNGP-LEDVM--D-NVDAVEWSVKGKFVAVAKKN-V---LSILTSKL 223 (1324)
Q Consensus 185 l~e~-lk~Va--s-gVScVcWSPKGKQLVVGlaD-G---IsQyTPDg 223 (1324)
+..+ .+.+. . .....+|||+|+.|+..... | |.++..++
T Consensus 264 l~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~ 310 (419)
T PRK04043 264 TNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNS 310 (419)
T ss_pred CCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCC
Confidence 8644 33332 2 23467899999999988765 3 66665443
No 218
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=93.63 E-value=0.36 Score=54.44 Aligned_cols=105 Identities=12% Similarity=0.076 Sum_probs=80.1
Q ss_pred CCCeeEEEEecCCCEEEEEeecCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEEEEe
Q 000733 106 NENVDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGGV 185 (1324)
Q Consensus 106 ~s~VshLAFSsDEs~LAVcaesGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl 185 (1324)
+..|.-+|.+.|+..++.|... -.+.+|||.+-. ..+ .++- +.+.|+.+++|-... .++--+-|.++.+||.
T Consensus 59 G~EVlD~~~s~Dnskf~s~GgD-k~v~vwDV~TGk--v~R---r~rg-H~aqVNtV~fNeesS-Vv~SgsfD~s~r~wDC 130 (307)
T KOG0316|consen 59 GHEVLDAALSSDNSKFASCGGD-KAVQVWDVNTGK--VDR---RFRG-HLAQVNTVRFNEESS-VVASGSFDSSVRLWDC 130 (307)
T ss_pred CceeeeccccccccccccCCCC-ceEEEEEcccCe--eee---eccc-ccceeeEEEecCcce-EEEeccccceeEEEEc
Confidence 3468888999999999998833 589999999742 233 2332 457899999988543 5666677999999999
Q ss_pred CCC----ceee---ecceeEEEeccCCCEEEEEecCc-eEEEc
Q 000733 186 NGP----LEDV---MDNVDAVEWSVKGKFVAVAKKNV-LSILT 220 (1324)
Q Consensus 186 ~e~----lk~V---asgVScVcWSPKGKQLVVGlaDG-IsQyT 220 (1324)
... ++.+ .++|+++. .-+.-|++|+.|| +..|.
T Consensus 131 RS~s~ePiQildea~D~V~Si~--v~~heIvaGS~DGtvRtyd 171 (307)
T KOG0316|consen 131 RSRSFEPIQILDEAKDGVSSID--VAEHEIVAGSVDGTVRTYD 171 (307)
T ss_pred ccCCCCccchhhhhcCceeEEE--ecccEEEeeccCCcEEEEE
Confidence 643 2333 38999998 6788999999999 99994
No 219
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=93.51 E-value=5.1 Score=43.32 Aligned_cols=117 Identities=13% Similarity=0.118 Sum_probs=77.3
Q ss_pred CeeEEEEecCCCEEEEEeecC--------CeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCe
Q 000733 108 NVDILSLSNDESTLAVSLYQS--------PHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGR 179 (1324)
Q Consensus 108 ~VshLAFSsDEs~LAVcaesG--------g~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGs 179 (1324)
.+..+++.+||. |.+..... |.|..++.. +....+.. .+ ...+-|+|+|+...++++-+..+.
T Consensus 87 ~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~----~~~~~~~~-~~---~~pNGi~~s~dg~~lyv~ds~~~~ 157 (246)
T PF08450_consen 87 RPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD----GKVTVVAD-GL---GFPNGIAFSPDGKTLYVADSFNGR 157 (246)
T ss_dssp EEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT----SEEEEEEE-EE---SSEEEEEEETTSSEEEEEETTTTE
T ss_pred CCceEEEcCCCC-EEEEecCCCccccccccceEEECCC----CeEEEEec-Cc---ccccceEECCcchheeecccccce
Confidence 688999999999 44444321 446666644 22222221 11 345789999987666667778999
Q ss_pred EEEEEeCCC-c-----eeee----c--ceeEEEeccCCCEEEEEecCc-eEEEccCcccccccccCc
Q 000733 180 LYRGGVNGP-L-----EDVM----D--NVDAVEWSVKGKFVAVAKKNV-LSILTSKLKERLPISLSF 233 (1324)
Q Consensus 180 L~Vldl~e~-l-----k~Va----s--gVScVcWSPKGKQLVVGlaDG-IsQyTPDgeeKkvIP~Pf 233 (1324)
|+.+++... . ..+. . ...-+|...+|.-.|+...+| |.+|+|+++....|+.|.
T Consensus 158 i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~G~~~~~i~~p~ 224 (246)
T PF08450_consen 158 IWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPDGKLLREIELPV 224 (246)
T ss_dssp EEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETTSCEEEEEE-SS
T ss_pred eEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCCccEEEEEcCCC
Confidence 999998532 1 1121 1 367899999999888777777 999999999888998883
No 220
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=93.49 E-value=0.22 Score=60.74 Aligned_cols=86 Identities=14% Similarity=0.123 Sum_probs=65.4
Q ss_pred CeeEEEEecCCCEEEEEeecCCeEEEEEccccc-CCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEEEEeC
Q 000733 108 NVDILSLSNDESTLAVSLYQSPHIHFFSVHSLL-NKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGGVN 186 (1324)
Q Consensus 108 ~VshLAFSsDEs~LAVcaesGg~L~VYDV~SLl-ng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl~ 186 (1324)
.|...+||+||.+||+.. ++|.|+||+-.+-. .+-...+| ..+.++.|+|+.. .+++-..|.-+.||.+.
T Consensus 292 ~in~f~FS~DG~~LA~VS-qDGfLRvF~fdt~eLlg~mkSYF-------GGLLCvcWSPDGK-yIvtGGEDDLVtVwSf~ 362 (636)
T KOG2394|consen 292 SINEFAFSPDGKYLATVS-QDGFLRIFDFDTQELLGVMKSYF-------GGLLCVCWSPDGK-YIVTGGEDDLVTVWSFE 362 (636)
T ss_pred cccceeEcCCCceEEEEe-cCceEEEeeccHHHHHHHHHhhc-------cceEEEEEcCCcc-EEEecCCcceEEEEEec
Confidence 588999999999998766 55799998866432 23344454 3589999999665 67777889999999998
Q ss_pred CCceeee------cceeEEEecc
Q 000733 187 GPLEDVM------DNVDAVEWSV 203 (1324)
Q Consensus 187 e~lk~Va------sgVScVcWSP 203 (1324)
+. ++|+ +-|+.|++-|
T Consensus 363 er-RVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 363 ER-RVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred cc-eEEEeccccccceeeEeecc
Confidence 77 5553 6788777665
No 221
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=93.45 E-value=0.8 Score=52.91 Aligned_cols=93 Identities=11% Similarity=0.179 Sum_probs=69.9
Q ss_pred cCCCEEEEEeecCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEEEEeCCC---cee-
Q 000733 116 NDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGGVNGP---LED- 191 (1324)
Q Consensus 116 sDEs~LAVcaesGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl~e~---lk~- 191 (1324)
.|+..+++.. ++.+.+||+++... ...|.=.++..||+|-+||+..+.+|.|..||.+++||.... ++.
T Consensus 182 Hdgnqv~tt~--d~tl~~~D~RT~~~-----~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el 254 (370)
T KOG1007|consen 182 HDGNQVATTS--DSTLQFWDLRTMKK-----NNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQEL 254 (370)
T ss_pred CccceEEEeC--CCcEEEEEccchhh-----hcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCcccccc
Confidence 4888887766 88999999996432 112222346789999999999999999999999999999643 222
Q ss_pred --eecceeEEEeccCCCEEEEE-ecCc
Q 000733 192 --VMDNVDAVEWSVKGKFVAVA-KKNV 215 (1324)
Q Consensus 192 --VasgVScVcWSPKGKQLVVG-laDG 215 (1324)
+.--|-||-+-|--.||+.- +.|.
T Consensus 255 ~~HsHWvW~VRfn~~hdqLiLs~~SDs 281 (370)
T KOG1007|consen 255 PGHSHWVWAVRFNPEHDQLILSGGSDS 281 (370)
T ss_pred CCCceEEEEEEecCccceEEEecCCCc
Confidence 23578899999999998654 4444
No 222
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.39 E-value=0.49 Score=58.64 Aligned_cols=108 Identities=15% Similarity=0.147 Sum_probs=83.1
Q ss_pred CCeeEEEEec-CCCEEEEEeecCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCC-CeEEEEEeCCeEEEEE
Q 000733 107 ENVDILSLSN-DESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPE-NSFLALSNVGRLYRGG 184 (1324)
Q Consensus 107 s~VshLAFSs-DEs~LAVcaesGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~a-slLAVVSsDGsL~Vld 184 (1324)
..|-+|+|++ |.++.|.|.- +..|.||++.+ ..|-++.. ++...|+++.+=|... ..++.-..|-++.|||
T Consensus 141 HyVMqv~fnPkD~ntFaS~sL-DrTVKVWslgs-----~~~nfTl~-gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWD 213 (794)
T KOG0276|consen 141 HYVMQVAFNPKDPNTFASASL-DRTVKVWSLGS-----PHPNFTLE-GHEKGVNCVDYYTGGDKPYLISGADDLTIKVWD 213 (794)
T ss_pred eEEEEEEecCCCccceeeeec-cccEEEEEcCC-----CCCceeee-ccccCcceEEeccCCCcceEEecCCCceEEEee
Confidence 3788999998 7777766653 46899998643 45555544 4456789998888653 4677778899999999
Q ss_pred eCCC-----ceeeecceeEEEeccCCCEEEEEecCc-eEEEcc
Q 000733 185 VNGP-----LEDVMDNVDAVEWSVKGKFVAVAKKNV-LSILTS 221 (1324)
Q Consensus 185 l~e~-----lk~VasgVScVcWSPKGKQLVVGlaDG-IsQyTP 221 (1324)
+... +.=++.+|++||+.|.=--|+.|+.|| +.+|-.
T Consensus 214 yQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs 256 (794)
T KOG0276|consen 214 YQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNS 256 (794)
T ss_pred cchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecC
Confidence 9653 122468999999999999999999999 999953
No 223
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=93.37 E-value=0.71 Score=52.91 Aligned_cols=152 Identities=14% Similarity=0.043 Sum_probs=84.8
Q ss_pred CcceEeeCCcceEEEEEcCCc-eEE--EEehHHHHHHhhcccCC-----------cccc----cccceeeeecCC-----
Q 000733 49 SLPLAVSQLSHQLIFAAHSSG-FCV--ARTNDVIDAAKEMKENG-----------TRCC----VQELSVVDVPFE----- 105 (1324)
Q Consensus 49 sSLLAVSN~K~GLvfAAgpdG-LvV--arTsDLr~a~ksa~en~-----------tv~~----~~dl~vi~VPLp----- 105 (1324)
--++.+-+ |++.+++||..| |.+ ..|.+.+...+.-.-|+ .... -..+.+..|.+.
T Consensus 75 F~p~s~~~-kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~ 153 (344)
T KOG4532|consen 75 FTPGSFIN-KCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFA 153 (344)
T ss_pred ccchHhhc-cccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccce
Confidence 34566778 999999998776 433 45566654332211010 0000 011222233321
Q ss_pred --CC--CeeEEEEecCCCEEEEEeecCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEE
Q 000733 106 --NE--NVDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLY 181 (1324)
Q Consensus 106 --~s--~VshLAFSsDEs~LAVcaesGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~ 181 (1324)
+. .+.+++.++|+..+++.. ....|.+|.+..=... ....+...+. ..--...||-+. ..|||++.||++.
T Consensus 154 ~h~~~~~~ns~~~snd~~~~~~Vg-ds~~Vf~y~id~~sey-~~~~~~a~t~--D~gF~~S~s~~~-~~FAv~~Qdg~~~ 228 (344)
T KOG4532|consen 154 VHNQNLTQNSLHYSNDPSWGSSVG-DSRRVFRYAIDDESEY-IENIYEAPTS--DHGFYNSFSEND-LQFAVVFQDGTCA 228 (344)
T ss_pred eeccccceeeeEEcCCCceEEEec-CCCcceEEEeCCccce-eeeeEecccC--CCceeeeeccCc-ceEEEEecCCcEE
Confidence 11 267889999999776655 3468999987753221 1111111222 223456676644 4799999999999
Q ss_pred EEEeCCCcee----------eecceeEEEeccCCC
Q 000733 182 RGGVNGPLED----------VMDNVDAVEWSVKGK 206 (1324)
Q Consensus 182 Vldl~e~lk~----------VasgVScVcWSPKGK 206 (1324)
|||+..-.+. ..+.+..+-+|++|-
T Consensus 229 I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~ 263 (344)
T KOG4532|consen 229 IYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGL 263 (344)
T ss_pred EEEecccccchhhhcccCCCCCCceEEEEecCCCc
Confidence 9999632111 124566666777553
No 224
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=93.22 E-value=0.14 Score=44.27 Aligned_cols=31 Identities=10% Similarity=0.268 Sum_probs=23.5
Q ss_pred ecceeEEEeccCCCEEEEEecCc-eEEEccCc
Q 000733 193 MDNVDAVEWSVKGKFVAVAKKNV-LSILTSKL 223 (1324)
Q Consensus 193 asgVScVcWSPKGKQLVVGlaDG-IsQyTPDg 223 (1324)
.+.|.|++|||+...||+|..+| |.+|.-++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~ 42 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLNW 42 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECCC
Confidence 45678888888888888888888 77775443
No 225
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=93.12 E-value=0.78 Score=58.44 Aligned_cols=119 Identities=13% Similarity=0.065 Sum_probs=84.6
Q ss_pred eeEEEEecCCCEEEEEeecCCeEEEEEccccc-CCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEEEEeCC
Q 000733 109 VDILSLSNDESTLAVSLYQSPHIHFFSVHSLL-NKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGGVNG 187 (1324)
Q Consensus 109 VshLAFSsDEs~LAVcaesGg~L~VYDV~SLl-ng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl~e 187 (1324)
+.+++||+.|.++|++... |.|++|. .+- .+....-..+-=. ...|.+|.|+++.. .+.--...|-|.+|.++.
T Consensus 208 ~t~~~~spn~~~~Aa~d~d-GrI~vw~--d~~~~~~~~t~t~lHWH-~~~V~~L~fS~~G~-~LlSGG~E~VLv~Wq~~T 282 (792)
T KOG1963|consen 208 ITCVALSPNERYLAAGDSD-GRILVWR--DFGSSDDSETCTLLHWH-HDEVNSLSFSSDGA-YLLSGGREGVLVLWQLET 282 (792)
T ss_pred ceeEEeccccceEEEeccC-CcEEEEe--ccccccccccceEEEec-ccccceeEEecCCc-eEeecccceEEEEEeecC
Confidence 6789999999999998866 6799996 443 2221111111112 25688888888665 455556788889998874
Q ss_pred C-cee---eecceeEEEeccCCCEEEEEecCc--eEEEccCcccccccccC
Q 000733 188 P-LED---VMDNVDAVEWSVKGKFVAVAKKNV--LSILTSKLKERLPISLS 232 (1324)
Q Consensus 188 ~-lk~---VasgVScVcWSPKGKQLVVGlaDG--IsQyTPDgeeKkvIP~P 232 (1324)
+ .+. +.+-+.-+.|||+|...++-++|- +.+-.|+++.+.+|.-+
T Consensus 283 ~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi 333 (792)
T KOG1963|consen 283 GKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGI 333 (792)
T ss_pred CCcccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCc
Confidence 4 233 358899999999999999999998 44556799999998654
No 226
>KOG4328 consensus WD40 protein [Function unknown]
Probab=93.04 E-value=0.57 Score=56.40 Aligned_cols=110 Identities=12% Similarity=0.173 Sum_probs=79.5
Q ss_pred CCeeEEEEecCCC-EEEEEeecCCeEEEEEcccccCCCCc-ceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEEEE
Q 000733 107 ENVDILSLSNDES-TLAVSLYQSPHIHFFSVHSLLNKEIK-PSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGG 184 (1324)
Q Consensus 107 s~VshLAFSsDEs-~LAVcaesGg~L~VYDV~SLlng~t~-P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vld 184 (1324)
.+|+.++|.+.+. .|+++...+|.|-||++. +++... -++.. +.++..|..|.++|...+.+...+-||++...|
T Consensus 187 ~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~--~~~~d~d~v~~f-~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D 263 (498)
T KOG4328|consen 187 RRITSLAFHPTENRKLVAVGDKGGQVGLWNFG--TQEKDKDGVYLF-TPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQD 263 (498)
T ss_pred cceEEEEecccCcceEEEEccCCCcEEEEecC--CCCCccCceEEe-ccCCccccceEecCCChhheeeeccCceeeeee
Confidence 4799999998877 666666678899999997 333222 23322 334689999999999988999999999999999
Q ss_pred eCCCc-eee------ecceeEEEeccCCCEEEEEecCc-eEEE
Q 000733 185 VNGPL-EDV------MDNVDAVEWSVKGKFVAVAKKNV-LSIL 219 (1324)
Q Consensus 185 l~e~l-k~V------asgVScVcWSPKGKQLVVGlaDG-IsQy 219 (1324)
+...+ ..+ ....+...++..-.-++.|..=| +..+
T Consensus 264 ~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~i 306 (498)
T KOG4328|consen 264 FEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVI 306 (498)
T ss_pred ecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEE
Confidence 97653 222 13455666666666666666668 6666
No 227
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=93.02 E-value=0.56 Score=54.58 Aligned_cols=111 Identities=10% Similarity=0.090 Sum_probs=78.2
Q ss_pred eecCCCCCeeEEEEecCCCEEEEEeecCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeE
Q 000733 101 DVPFENENVDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRL 180 (1324)
Q Consensus 101 ~VPLp~s~VshLAFSsDEs~LAVcaesGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL 180 (1324)
++..+ ...++.||.-|.+|||...+ |.|-+||..++--+..-. .+-.+|..|.|+|+.. .++..+.|.++
T Consensus 20 tld~~--~a~~~~Fs~~G~~lAvGc~n-G~vvI~D~~T~~iar~ls------aH~~pi~sl~WS~dgr-~LltsS~D~si 89 (405)
T KOG1273|consen 20 TLDNP--LAECCQFSRWGDYLAVGCAN-GRVVIYDFDTFRIARMLS------AHVRPITSLCWSRDGR-KLLTSSRDWSI 89 (405)
T ss_pred eccCC--ccceEEeccCcceeeeeccC-CcEEEEEccccchhhhhh------ccccceeEEEecCCCC-EeeeecCCcee
Confidence 34444 47789999999999998765 689999988774321111 1225799999999665 67888899999
Q ss_pred EEEEeCCCc--eee--ecceeEEEeccCCCEEEEEe--cCc--eEEEcc
Q 000733 181 YRGGVNGPL--EDV--MDNVDAVEWSVKGKFVAVAK--KNV--LSILTS 221 (1324)
Q Consensus 181 ~Vldl~e~l--k~V--asgVScVcWSPKGKQLVVGl--aDG--IsQyTP 221 (1324)
.+||+-.+. +.+ .+.|..+.|.|.-...++++ .-. +.++++
T Consensus 90 ~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~ 138 (405)
T KOG1273|consen 90 KLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSD 138 (405)
T ss_pred EEEeccCCCceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecC
Confidence 999997652 222 37899999999865554443 333 566653
No 228
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=93.00 E-value=0.74 Score=52.81 Aligned_cols=105 Identities=17% Similarity=0.134 Sum_probs=66.2
Q ss_pred CeeEEEEecCCCEEEEEeecCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCC-----CCeEEEEEeCCeEEE
Q 000733 108 NVDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKP-----ENSFLALSNVGRLYR 182 (1324)
Q Consensus 108 ~VshLAFSsDEs~LAVcaesGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~-----aslLAVVSsDGsL~V 182 (1324)
+=..|++|+|+..||. +++.|.|+|||+-.-.--.+.|..+....-+..|..|.+-+.. ...|.|++-.|.|.-
T Consensus 45 QWRkl~WSpD~tlLa~-a~S~G~i~vfdl~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~S 123 (282)
T PF15492_consen 45 QWRKLAWSPDCTLLAY-AESTGTIRVFDLMGSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRS 123 (282)
T ss_pred hheEEEECCCCcEEEE-EcCCCeEEEEecccceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeee
Confidence 5678999999996665 4466899999876211112333222222223456666665543 237888899999965
Q ss_pred EEe--CC--Cc-ee--------eecceeEEEeccCCCEEEEEec
Q 000733 183 GGV--NG--PL-ED--------VMDNVDAVEWSVKGKFVAVAKK 213 (1324)
Q Consensus 183 ldl--~e--~l-k~--------VasgVScVcWSPKGKQLVVGla 213 (1324)
+-+ +. +. .. +..||.+++|.|+=.-|++|+.
T Consensus 124 y~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~ 167 (282)
T PF15492_consen 124 YLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGC 167 (282)
T ss_pred EEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEecc
Confidence 544 21 11 11 2369999999999887776643
No 229
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=92.99 E-value=4.5 Score=43.72 Aligned_cols=108 Identities=15% Similarity=0.111 Sum_probs=70.0
Q ss_pred eeEEEEecCCCEEEEEeecCCeEEEEEcccccCCCCcceeEEec-C-CCcceEEEEecCCCCCeEEEEEeC--------C
Q 000733 109 VDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSL-N-GSTYVKDIRWRKKPENSFLALSNV--------G 178 (1324)
Q Consensus 109 VshLAFSsDEs~LAVcaesGg~L~VYDV~SLlng~t~P~~sisL-n-~st~VrdLaWNP~~aslLAVVSsD--------G 178 (1324)
+.-+++..++..|++|. .+.+.+||..+ +..+++..... . +....+|++..|+.. +++.-... |
T Consensus 42 ~~G~~~~~~~g~l~v~~--~~~~~~~d~~~---g~~~~~~~~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g 115 (246)
T PF08450_consen 42 PNGMAFDRPDGRLYVAD--SGGIAVVDPDT---GKVTVLADLPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPG 115 (246)
T ss_dssp EEEEEEECTTSEEEEEE--TTCEEEEETTT---TEEEEEEEEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSE
T ss_pred CceEEEEccCCEEEEEE--cCceEEEecCC---CcEEEEeeccCCCcccCCCceEEEcCCCC-EEEEecCCCcccccccc
Confidence 66667774345577877 56778886553 55666766532 1 346789999998643 44444332 6
Q ss_pred eEEEEEeCCCceeee---cceeEEEeccCCCEEEEEecC-c-eEEEccC
Q 000733 179 RLYRGGVNGPLEDVM---DNVDAVEWSVKGKFVAVAKKN-V-LSILTSK 222 (1324)
Q Consensus 179 sL~Vldl~e~lk~Va---sgVScVcWSPKGKQLVVGlaD-G-IsQyTPD 222 (1324)
.|+.++.....+.+. ...-.+||||+|+.|.+.... + |..|..+
T Consensus 116 ~v~~~~~~~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~ 164 (246)
T PF08450_consen 116 SVYRIDPDGKVTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLD 164 (246)
T ss_dssp EEEEEETTSEEEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEE
T ss_pred ceEEECCCCeEEEEecCcccccceEECCcchheeecccccceeEEEecc
Confidence 788888874444444 344579999999998766555 5 9999764
No 230
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=92.97 E-value=0.3 Score=61.00 Aligned_cols=105 Identities=17% Similarity=0.101 Sum_probs=68.2
Q ss_pred CeeEEEEecCCCEEEEEeecCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEEEEeCC
Q 000733 108 NVDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGGVNG 187 (1324)
Q Consensus 108 ~VshLAFSsDEs~LAVcaesGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl~e 187 (1324)
+|..-++.+.+.+|++++.. |.|++|+-..-.- ...+. ++ ....+....-++ ...++|+-+..|.+.|+.+..
T Consensus 35 ~v~lTc~dst~~~l~~GsS~-G~lyl~~R~~~~~-~~~~~-~~---~~~~~~~~~vs~-~e~lvAagt~~g~V~v~ql~~ 107 (726)
T KOG3621|consen 35 RVKLTCVDATEEYLAMGSSA-GSVYLYNRHTGEM-RKLKN-EG---ATGITCVRSVSS-VEYLVAAGTASGRVSVFQLNK 107 (726)
T ss_pred eEEEEEeecCCceEEEeccc-ceEEEEecCchhh-hcccc-cC---ccceEEEEEecc-hhHhhhhhcCCceEEeehhhc
Confidence 35666777888888887744 6899998553211 11111 00 112233344444 334777888899999988764
Q ss_pred Cc---ee--------eecceeEEEeccCCCEEEEEecCc-eEEE
Q 000733 188 PL---ED--------VMDNVDAVEWSVKGKFVAVAKKNV-LSIL 219 (1324)
Q Consensus 188 ~l---k~--------VasgVScVcWSPKGKQLVVGlaDG-IsQy 219 (1324)
+. .+ +...|||+|||++||++.+|..-| |.--
T Consensus 108 ~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~ 151 (726)
T KOG3621|consen 108 ELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLT 151 (726)
T ss_pred cCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEE
Confidence 32 11 146899999999999999999999 5444
No 231
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=92.76 E-value=1.2 Score=55.38 Aligned_cols=112 Identities=15% Similarity=0.156 Sum_probs=67.7
Q ss_pred CEEEEEeecCCeEEEEEcccccCCCCcce----eEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEEEEeC-CC--ce-
Q 000733 119 STLAVSLYQSPHIHFFSVHSLLNKEIKPS----FSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGGVN-GP--LE- 190 (1324)
Q Consensus 119 s~LAVcaesGg~L~VYDV~SLlng~t~P~----~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl~-e~--lk- 190 (1324)
.+|||-. +..|.||.+.-=.....+.+ ++|+=.=...-.-..|-|..+ .++|++....=...++. +. ++
T Consensus 74 aLLAVQH--kkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~-iL~VLT~~dvSV~~sV~~d~srVka 150 (671)
T PF15390_consen 74 ALLAVQH--KKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKA-ILTVLTARDVSVLPSVHCDSSRVKA 150 (671)
T ss_pred ceEEEec--cceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCc-eEEEEecCceeEeeeeeeCCceEEE
Confidence 5678877 78999999883222222222 222100001123357999655 56676654432333553 22 21
Q ss_pred ee--ecceeEEEeccCCCEEEEEecCceEEEccCcccccccccCc
Q 000733 191 DV--MDNVDAVEWSVKGKFVAVAKKNVLSILTSKLKERLPISLSF 233 (1324)
Q Consensus 191 ~V--asgVScVcWSPKGKQLVVGlaDGIsQyTPDgeeKkvIP~Pf 233 (1324)
.+ .+-+-|+||.++|..||++-++.+.-|..|-..|..-+|+|
T Consensus 151 Di~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qKtL~~Csf 195 (671)
T PF15390_consen 151 DIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQKTLHRCSF 195 (671)
T ss_pred eccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCchhhhhhCCc
Confidence 12 26788999999999999999998666666766776667774
No 232
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=92.73 E-value=0.47 Score=58.10 Aligned_cols=137 Identities=9% Similarity=0.057 Sum_probs=100.3
Q ss_pred CCeeEEEEecCCCEEEEEeecCCeEEEEEccc---ccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEEE
Q 000733 107 ENVDILSLSNDESTLAVSLYQSPHIHFFSVHS---LLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRG 183 (1324)
Q Consensus 107 s~VshLAFSsDEs~LAVcaesGg~L~VYDV~S---Llng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vl 183 (1324)
..|.+++|.+-+-.|+.|.++ +.|.+|.++. =..+...|.++++-. ..+|.++.-.++..+ +.-.+-||++..|
T Consensus 295 d~ir~l~~~~sep~lit~sed-~~lk~WnLqk~~~s~~~~~epi~tfraH-~gPVl~v~v~~n~~~-~ysgg~Dg~I~~w 371 (577)
T KOG0642|consen 295 DCIRALAFHPSEPVLITASED-GTLKLWNLQKAKKSAEKDVEPILTFRAH-EGPVLCVVVPSNGEH-CYSGGIDGTIRCW 371 (577)
T ss_pred hhhhhhhcCCCCCeEEEeccc-cchhhhhhcccCCccccceeeeEEEecc-cCceEEEEecCCceE-EEeeccCceeeee
Confidence 368899999999999999987 5899999843 122378888888763 368999999776654 6666889999999
Q ss_pred EeCCCc--------ee-------eecceeEEEeccCCCEEEEEecCc-eEEEccCcccccccccCccccCCCCCCCCcee
Q 000733 184 GVNGPL--------ED-------VMDNVDAVEWSVKGKFVAVAKKNV-LSILTSKLKERLPISLSFKSWVGDCDVNCSVK 247 (1324)
Q Consensus 184 dl~e~l--------k~-------VasgVScVcWSPKGKQLVVGlaDG-IsQyTPDgeeKkvIP~Pf~S~I~D~d~d~sV~ 247 (1324)
++-... .. +.+.|--++.|.--.+|+..+.|| +.+|.|..+...++..|- +...+..
T Consensus 372 ~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~-------e~g~Pls 444 (577)
T KOG0642|consen 372 NLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPK-------EHGYPLS 444 (577)
T ss_pred ccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCcc-------ccCCcce
Confidence 774221 11 125666788899999999999999 999998777765565552 2334555
Q ss_pred EEEEEE
Q 000733 248 VDSIRW 253 (1324)
Q Consensus 248 V~SI~W 253 (1324)
|+-+.|
T Consensus 445 vd~~ss 450 (577)
T KOG0642|consen 445 VDRTSS 450 (577)
T ss_pred Eeeccc
Confidence 555555
No 233
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=92.72 E-value=0.66 Score=57.19 Aligned_cols=122 Identities=14% Similarity=0.166 Sum_probs=80.7
Q ss_pred EEecCCCEEEEEeecCCeEEEEEcccccCC-CCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEEEEeCCC--c
Q 000733 113 SLSNDESTLAVSLYQSPHIHFFSVHSLLNK-EIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGGVNGP--L 189 (1324)
Q Consensus 113 AFSsDEs~LAVcaesGg~L~VYDV~SLlng-~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl~e~--l 189 (1324)
-+||| + +++++ |..|+=+++. +| =.+||.. . +..|+.+.-||... ++|+-+.||.+-.||-... +
T Consensus 143 ~~scD-l-y~~gs--g~evYRlNLE---qGrfL~P~~~---~-~~~lN~v~in~~hg-Lla~Gt~~g~VEfwDpR~ksrv 210 (703)
T KOG2321|consen 143 KPSCD-L-YLVGS--GSEVYRLNLE---QGRFLNPFET---D-SGELNVVSINEEHG-LLACGTEDGVVEFWDPRDKSRV 210 (703)
T ss_pred CCCcc-E-EEeec--CcceEEEEcc---cccccccccc---c-cccceeeeecCccc-eEEecccCceEEEecchhhhhh
Confidence 34555 2 34444 5555555443 33 2445543 2 24678888888654 7888888999999986432 2
Q ss_pred eee--e------------cceeEEEeccCCCEEEEEecCc-eEEEccCcccccccccCccccCCCCCCCCceeEEEEEEe
Q 000733 190 EDV--M------------DNVDAVEWSVKGKFVAVAKKNV-LSILTSKLKERLPISLSFKSWVGDCDVNCSVKVDSIRWV 254 (1324)
Q Consensus 190 k~V--a------------sgVScVcWSPKGKQLVVGlaDG-IsQyTPDgeeKkvIP~Pf~S~I~D~d~d~sV~V~SI~WL 254 (1324)
..+ . ..|+++.++-+|=+++||+.+| +.+| |+.....+-. -+.++.+.+..|.|+
T Consensus 211 ~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iy--DLRa~~pl~~--------kdh~~e~pi~~l~~~ 280 (703)
T KOG2321|consen 211 GTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIY--DLRASKPLLV--------KDHGYELPIKKLDWQ 280 (703)
T ss_pred eeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEE--EcccCCceee--------cccCCccceeeeccc
Confidence 111 1 2499999999999999999999 9999 5544432221 345677889999998
Q ss_pred cC
Q 000733 255 RR 256 (1324)
Q Consensus 255 eN 256 (1324)
.+
T Consensus 281 ~~ 282 (703)
T KOG2321|consen 281 DT 282 (703)
T ss_pred cc
Confidence 76
No 234
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=92.68 E-value=0.33 Score=60.68 Aligned_cols=190 Identities=15% Similarity=0.169 Sum_probs=113.7
Q ss_pred cceEeeCCcceEEEEEcCCc-eEEEEehHHHHHHhhcccCCc-cccccccee-eeecCCCCCeeEEEEecCCCEEEEEee
Q 000733 50 LPLAVSQLSHQLIFAAHSSG-FCVARTNDVIDAAKEMKENGT-RCCVQELSV-VDVPFENENVDILSLSNDESTLAVSLY 126 (1324)
Q Consensus 50 SLLAVSN~K~GLvfAAgpdG-LvVarTsDLr~a~ksa~en~t-v~~~~dl~v-i~VPLp~s~VshLAFSsDEs~LAVcae 126 (1324)
+-.+=.- ..|++++||.+| ++|.++..-.. +.+.. ..-+..+.+ -++..+++.|..|..+-....|-...+
T Consensus 18 ~c~~WNk-e~gyIAcgG~dGlLKVlKl~t~t~-----d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt 91 (1189)
T KOG2041|consen 18 HCAEWNK-ESGYIACGGADGLLKVLKLGTDTT-----DLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDT 91 (1189)
T ss_pred EEEEEcc-cCCeEEeccccceeEEEEccccCC-----cccccccccccccchhhhhccCcceEEEEEeccccccccccCC
Confidence 3334444 789999999998 56654331110 11100 001111110 123444556778888888887877666
Q ss_pred cCCeEEEEEcccccCCCCcceeEEecC--CCcceEEEEecCCCCCeEEEEEeCCeEEEEEeCCC---ceeee-cceeEEE
Q 000733 127 QSPHIHFFSVHSLLNKEIKPSFSCSLN--GSTYVKDIRWRKKPENSFLALSNVGRLYRGGVNGP---LEDVM-DNVDAVE 200 (1324)
Q Consensus 127 sGg~L~VYDV~SLlng~t~P~~sisLn--~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl~e~---lk~Va-sgVScVc 200 (1324)
+ |.|.||=+- +|. .++=-+| ....|+.+.||-+.. -+++|..||.+.|+.+.+. .+.+. ...+-|-
T Consensus 92 ~-GlIiVWmly---kgs---W~EEMiNnRnKSvV~SmsWn~dG~-kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ 163 (1189)
T KOG2041|consen 92 S-GLIIVWMLY---KGS---WCEEMINNRNKSVVVSMSWNLDGT-KICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVL 163 (1189)
T ss_pred C-ceEEEEeee---ccc---HHHHHhhCcCccEEEEEEEcCCCc-EEEEEEccCCEEEEeeccceecchhcchhecccee
Confidence 6 688898543 220 0000000 125799999998665 6999999999999999654 13332 4556788
Q ss_pred eccCCCEEEEEecCc-eEEEccC--cccccccccCccccCCCCCCCCceeEEEEEEec
Q 000733 201 WSVKGKFVAVAKKNV-LSILTSK--LKERLPISLSFKSWVGDCDVNCSVKVDSIRWVR 255 (1324)
Q Consensus 201 WSPKGKQLVVGlaDG-IsQyTPD--geeKkvIP~Pf~S~I~D~d~d~sV~V~SI~WLe 255 (1324)
||++-+|+..+.+|| +.+|.-. ++-|-.+.|..+ +-.--...+.++-+|.|-.
T Consensus 164 ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn--~tg~~s~~~~kia~i~w~~ 219 (1189)
T KOG2041|consen 164 WSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVN--GTGIFSNFPTKIAEIEWNT 219 (1189)
T ss_pred ecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEe--eeeeecCCCccccceeecc
Confidence 999999999999999 9999653 344555555310 0000122344688889963
No 235
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=92.55 E-value=0.77 Score=53.64 Aligned_cols=111 Identities=14% Similarity=0.123 Sum_probs=77.6
Q ss_pred eeEEEEecCCCEEEEEeecCCeEEEEEccc-ccCCC---Ccc---eeEEecCCCcceEEEEecCCC------CCeEEEEE
Q 000733 109 VDILSLSNDESTLAVSLYQSPHIHFFSVHS-LLNKE---IKP---SFSCSLNGSTYVKDIRWRKKP------ENSFLALS 175 (1324)
Q Consensus 109 VshLAFSsDEs~LAVcaesGg~L~VYDV~S-Llng~---t~P---~~sisLn~st~VrdLaWNP~~------aslLAVVS 175 (1324)
..-.-.|+||+.+.+..+. ..|++|++.. +..++ ..+ -.+++...+.+|-+-.|=|.. .+++|+-+
T Consensus 52 ~kgckWSPDGSciL~~sed-n~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ss 130 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSED-NCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSS 130 (406)
T ss_pred hccceeCCCCceEEeeccc-CeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecc
Confidence 3444568999988877765 4799999873 22221 111 122333334789999998642 24888889
Q ss_pred eCCeEEEEEeCCC-cee----e-----ecceeEEEeccCCCEEEEEecCceEEEc
Q 000733 176 NVGRLYRGGVNGP-LED----V-----MDNVDAVEWSVKGKFVAVAKKNVLSILT 220 (1324)
Q Consensus 176 sDGsL~Vldl~e~-lk~----V-----asgVScVcWSPKGKQLVVGlaDGIsQyT 220 (1324)
.+.-|.+||.-.+ ++. + ..++-|+|+||+|.||.+|.++.|.+|.
T Consensus 131 r~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGykrcirvFd 185 (406)
T KOG2919|consen 131 RDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFD 185 (406)
T ss_pred ccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecccceEEEee
Confidence 9999999998544 221 1 1567799999999999999999988884
No 236
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=92.47 E-value=3.4 Score=51.16 Aligned_cols=138 Identities=15% Similarity=0.183 Sum_probs=89.5
Q ss_pred EecCCCEEEEEeec------CCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEE---eCCeEEEEE
Q 000733 114 LSNDESTLAVSLYQ------SPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALS---NVGRLYRGG 184 (1324)
Q Consensus 114 FSsDEs~LAVcaes------Gg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVS---sDGsL~Vld 184 (1324)
.-..|.+|+|-+.+ +|...-+++-.+-. .--|+....+- ..|..|+|-|..+ -||++. ...++..+.
T Consensus 401 WQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrire-KdIpve~velk--e~vi~FaWEP~gd-kF~vi~g~~~k~tvsfY~ 476 (698)
T KOG2314|consen 401 WQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIRE-KDIPVEVVELK--ESVIAFAWEPHGD-KFAVISGNTVKNTVSFYA 476 (698)
T ss_pred eccCCcEEEEEEEeeccccccceEeeEEEEEeec-cCCCceeeecc--hheeeeeeccCCC-eEEEEEccccccceeEEE
Confidence 34789999888754 23222222222222 33455555553 4799999999665 577774 345677777
Q ss_pred eCCC---ceee----ecceeEEEeccCCCEEEEEec---Cc-eEEEccCcccccccccCccccCCCCCCCCceeEEEEEE
Q 000733 185 VNGP---LEDV----MDNVDAVEWSVKGKFVAVAKK---NV-LSILTSKLKERLPISLSFKSWVGDCDVNCSVKVDSIRW 253 (1324)
Q Consensus 185 l~e~---lk~V----asgVScVcWSPKGKQLVVGla---DG-IsQyTPDgeeKkvIP~Pf~S~I~D~d~d~sV~V~SI~W 253 (1324)
+... .+++ +.....+-|||+|..||+|.- .| +..|.-+....+.+..|- -.-...+.|
T Consensus 477 ~e~~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~e-----------h~~at~veW 545 (698)
T KOG2314|consen 477 VETNIKKPSLVKELDKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPE-----------HFAATEVEW 545 (698)
T ss_pred eecCCCchhhhhhhcccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCcc-----------ccccccceE
Confidence 6522 2233 245567999999999987744 56 999977765666666551 134678899
Q ss_pred ecCCeEEEEEEee
Q 000733 254 VRRDCIIIGCFQL 266 (1324)
Q Consensus 254 LeNd~yLFg~vys 266 (1324)
--+.-|+++++..
T Consensus 546 DPtGRYvvT~ss~ 558 (698)
T KOG2314|consen 546 DPTGRYVVTSSSS 558 (698)
T ss_pred CCCCCEEEEeeeh
Confidence 9888899888754
No 237
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=92.41 E-value=1.4 Score=53.57 Aligned_cols=101 Identities=8% Similarity=0.114 Sum_probs=75.8
Q ss_pred CCeeEEEEecCCCEEEEEeecCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEEEEeC
Q 000733 107 ENVDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGGVN 186 (1324)
Q Consensus 107 s~VshLAFSsDEs~LAVcaesGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl~ 186 (1324)
.+|...-+..|..-+++.+..|-.|-+|+...-.-+..++ +=..|-+++-+|+.. .++|..+.+.|++.|+.
T Consensus 360 ~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~-------~lg~I~av~vs~dGK-~~vvaNdr~el~vidid 431 (668)
T COG4946 360 GGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEK-------DLGNIEAVKVSPDGK-KVVVANDRFELWVIDID 431 (668)
T ss_pred CceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeC-------CccceEEEEEcCCCc-EEEEEcCceEEEEEEec
Confidence 4699999999999888888777799999987644222221 113578888888544 45556667889999997
Q ss_pred CC-ceeee----cceeEEEeccCCCEEEEEecCc
Q 000733 187 GP-LEDVM----DNVDAVEWSVKGKFVAVAKKNV 215 (1324)
Q Consensus 187 e~-lk~Va----sgVScVcWSPKGKQLVVGlaDG 215 (1324)
.+ ++++. .=++-+.|||.+..||+|..+|
T Consensus 432 ngnv~~idkS~~~lItdf~~~~nsr~iAYafP~g 465 (668)
T COG4946 432 NGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEG 465 (668)
T ss_pred CCCeeEecccccceeEEEEEcCCceeEEEecCcc
Confidence 54 45552 5678999999999999999999
No 238
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=92.31 E-value=1.5 Score=56.09 Aligned_cols=132 Identities=11% Similarity=0.052 Sum_probs=87.4
Q ss_pred eeEEEEecCCCEEEEEeecCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEEEE-eC-
Q 000733 109 VDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGG-VN- 186 (1324)
Q Consensus 109 VshLAFSsDEs~LAVcaesGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vld-l~- 186 (1324)
...|.++..+.+-+++. .-.+++|.+..-. ...-.+.+.+.+.-.+..++.+|+-. .+|+-..||.+.||. .+
T Consensus 163 ~~~I~~~~~ge~~~i~~--~~~~~~~~v~~~~--~~~~~~~~~~~Htf~~t~~~~spn~~-~~Aa~d~dGrI~vw~d~~~ 237 (792)
T KOG1963|consen 163 PKSIVDNNSGEFKGIVH--MCKIHIYFVPKHT--KHTSSRDITVHHTFNITCVALSPNER-YLAAGDSDGRILVWRDFGS 237 (792)
T ss_pred CccEEEcCCceEEEEEE--eeeEEEEEecccc--eeeccchhhhhhcccceeEEeccccc-eEEEeccCCcEEEEecccc
Confidence 34577778888777777 4478888887632 12222223333323367888888654 788889999999994 44
Q ss_pred CCc----e---eeecceeEEEeccCCCEEEEEecCc-eEEEccCcccccccccCccccCCCCCCCCceeEEEEEEecCC
Q 000733 187 GPL----E---DVMDNVDAVEWSVKGKFVAVAKKNV-LSILTSKLKERLPISLSFKSWVGDCDVNCSVKVDSIRWVRRD 257 (1324)
Q Consensus 187 e~l----k---~VasgVScVcWSPKGKQLVVGlaDG-IsQyTPDgeeKkvIP~Pf~S~I~D~d~d~sV~V~SI~WLeNd 257 (1324)
+.. + .+.+.|.|.+||++|-+|..|+.-| +..|.=+-..+.-+|+= .-.+.+|.|....
T Consensus 238 ~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqfLPRL------------gs~I~~i~vS~ds 304 (792)
T KOG1963|consen 238 SDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQFLPRL------------GSPILHIVVSPDS 304 (792)
T ss_pred ccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCCccccccc------------CCeeEEEEEcCCC
Confidence 221 1 2248999999999999999999999 88885333334444542 1147777776443
No 239
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=92.24 E-value=3.2 Score=51.29 Aligned_cols=115 Identities=12% Similarity=0.158 Sum_probs=74.5
Q ss_pred eEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEE--eCCeEEEEEeCCCcee-eecc-eeEEEeccCC
Q 000733 130 HIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALS--NVGRLYRGGVNGPLED-VMDN-VDAVEWSVKG 205 (1324)
Q Consensus 130 ~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVS--sDGsL~Vldl~e~lk~-Vasg-VScVcWSPKG 205 (1324)
.||++++. | ......+....+|.|+.|||... -||||. .--++.|+|+...+.+ +.+| =-|+=|||.|
T Consensus 252 ~Lyll~t~----g---~s~~V~L~k~GPVhdv~W~~s~~-EF~VvyGfMPAkvtifnlr~~~v~df~egpRN~~~fnp~g 323 (566)
T KOG2315|consen 252 TLYLLATQ----G---ESVSVPLLKEGPVHDVTWSPSGR-EFAVVYGFMPAKVTIFNLRGKPVFDFPEGPRNTAFFNPHG 323 (566)
T ss_pred eEEEEEec----C---ceEEEecCCCCCceEEEECCCCC-EEEEEEecccceEEEEcCCCCEeEeCCCCCccceEECCCC
Confidence 56666655 2 12234454456899999999776 488885 3455677787654322 2233 3489999999
Q ss_pred CEEE-EEecC--c-eEEEccCcccccccccCccccCCCCCCCCceeEEEEEEecCCeEEEEEEe
Q 000733 206 KFVA-VAKKN--V-LSILTSKLKERLPISLSFKSWVGDCDVNCSVKVDSIRWVRRDCIIIGCFQ 265 (1324)
Q Consensus 206 KQLV-VGlaD--G-IsQyTPDgeeKkvIP~Pf~S~I~D~d~d~sV~V~SI~WLeNd~yLFg~vy 265 (1324)
..|+ +|..| | +.+| |...++.|..+- ..+ ..-..|-.+..|++++..
T Consensus 324 ~ii~lAGFGNL~G~mEvw--Dv~n~K~i~~~~-------a~~----tt~~eW~PdGe~flTATT 374 (566)
T KOG2315|consen 324 NIILLAGFGNLPGDMEVW--DVPNRKLIAKFK-------AAN----TTVFEWSPDGEYFLTATT 374 (566)
T ss_pred CEEEEeecCCCCCceEEE--eccchhhccccc-------cCC----ceEEEEcCCCcEEEEEec
Confidence 9884 57777 7 9999 666677777651 011 223468777778777653
No 240
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=92.23 E-value=0.25 Score=56.13 Aligned_cols=75 Identities=11% Similarity=0.141 Sum_probs=61.0
Q ss_pred CeeEEEEecCCCEEEEEeecCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEEEEeCC
Q 000733 108 NVDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGGVNG 187 (1324)
Q Consensus 108 ~VshLAFSsDEs~LAVcaesGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl~e 187 (1324)
.|+.|+-.+-.+.|++|.+.+|.+.+||++.+ ..|...+.. +...+.++.|-|..++.+.+|++||+|+.||...
T Consensus 181 ~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~----~~p~S~l~a-hk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 181 AVTALCSHPAQQHLVCCGTDDGIVGLWDARNV----AMPVSLLKA-HKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred cchhhhCCcccccEEEEecCCCeEEEEEcccc----cchHHHHHH-hhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 46777777888889999999999999999987 444443333 3478999999999888899999999999999863
No 241
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=92.16 E-value=1.1 Score=52.60 Aligned_cols=137 Identities=10% Similarity=0.123 Sum_probs=77.0
Q ss_pred eeEEEEec-CCCEEEEEeecCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEE----EEeCCeEEEE
Q 000733 109 VDILSLSN-DESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLA----LSNVGRLYRG 183 (1324)
Q Consensus 109 VshLAFSs-DEs~LAVcaesGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAV----VSsDGsL~Vl 183 (1324)
+..++|.. |.--++.....+|.|++||+++.-.. +.+.+.=.+++....|.=|-.. +.++. .-.|-.|++|
T Consensus 73 ~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~---a~~~~~~~~~~~f~~ld~nck~-~ii~~GtE~~~s~A~v~lw 148 (376)
T KOG1188|consen 73 TNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAES---ARISWTQQSGTPFICLDLNCKK-NIIACGTELTRSDASVVLW 148 (376)
T ss_pred ccceEEecCCCCCeeEEeccCCeEEEEEeecchhh---hheeccCCCCCcceEeeccCcC-CeEEeccccccCceEEEEE
Confidence 44566643 23333333334789999999986542 1111211222344444443221 12221 2357788999
Q ss_pred EeCCCcee-------eecceeEEEeccC-CCEEEEEecCc-eEEEccCcccccccccCccccCCCCCCCCceeEEEEEEe
Q 000733 184 GVNGPLED-------VMDNVDAVEWSVK-GKFVAVAKKNV-LSILTSKLKERLPISLSFKSWVGDCDVNCSVKVDSIRWV 254 (1324)
Q Consensus 184 dl~e~lk~-------VasgVScVcWSPK-GKQLVVGlaDG-IsQyTPDgeeKkvIP~Pf~S~I~D~d~d~sV~V~SI~WL 254 (1324)
|+....+. +.+.|||+++.|+ -.-|+.|+-|| +-+|.-.... . --+.- ...+..-.|..|.|+
T Consensus 149 DvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~--E-eDaL~-----~viN~~sSI~~igw~ 220 (376)
T KOG1188|consen 149 DVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDN--E-EDALL-----HVINHGSSIHLIGWL 220 (376)
T ss_pred EeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCc--c-hhhHH-----Hhhcccceeeeeeee
Confidence 99765442 3589999999997 45789999999 9999432110 0 00000 011222358899999
Q ss_pred cCC
Q 000733 255 RRD 257 (1324)
Q Consensus 255 eNd 257 (1324)
++.
T Consensus 221 ~~~ 223 (376)
T KOG1188|consen 221 SKK 223 (376)
T ss_pred cCC
Confidence 985
No 242
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=92.04 E-value=1.3 Score=52.94 Aligned_cols=140 Identities=11% Similarity=0.143 Sum_probs=92.4
Q ss_pred CeeEEEEecCCC-EEEEEeecCCeEEEEEcccccCCCC-cceeEEe-c-CCCcceEEEEecCCCCCeEEEEEeCCeEEEE
Q 000733 108 NVDILSLSNDES-TLAVSLYQSPHIHFFSVHSLLNKEI-KPSFSCS-L-NGSTYVKDIRWRKKPENSFLALSNVGRLYRG 183 (1324)
Q Consensus 108 ~VshLAFSsDEs-~LAVcaesGg~L~VYDV~SLlng~t-~P~~sis-L-n~st~VrdLaWNP~~aslLAVVSsDGsL~Vl 183 (1324)
.|..+-|..... .||.+. .+..|++|-+..-..+.. ..+.... | .+...|+.+.|||.. +.+|-+..+|.+++|
T Consensus 15 pv~s~dfq~n~~~~laT~G-~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~g-elLASg~D~g~v~lW 92 (434)
T KOG1009|consen 15 PVYSVDFQKNSLNKLATAG-GDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDG-ELLASGGDGGEVFLW 92 (434)
T ss_pred ceEEEEeccCcccceeccc-CccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCc-CeeeecCCCceEEEE
Confidence 478888865444 677665 335899999887665432 2222222 2 345789999999965 489999999999999
Q ss_pred EeCC--------------Cc----eee---ecceeEEEeccCCCEEEEEecCc-eEEEccCcccccccccCccccCCCCC
Q 000733 184 GVNG--------------PL----EDV---MDNVDAVEWSVKGKFVAVAKKNV-LSILTSKLKERLPISLSFKSWVGDCD 241 (1324)
Q Consensus 184 dl~e--------------~l----k~V---asgVScVcWSPKGKQLVVGlaDG-IsQyTPDgeeKkvIP~Pf~S~I~D~d 241 (1324)
..++ +. +.+ ...+--.||+|+|..|+.|..|- +.+| |......+..-
T Consensus 93 k~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~--Dv~~G~l~~~~--------- 161 (434)
T KOG1009|consen 93 KQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLW--DVHAGQLLAIL--------- 161 (434)
T ss_pred EecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEE--EeccceeEeec---------
Confidence 8761 10 011 25677799999999999999998 8888 43333332221
Q ss_pred CCCceeEEEEEEecCCeEE
Q 000733 242 VNCSVKVDSIRWVRRDCII 260 (1324)
Q Consensus 242 ~d~sV~V~SI~WLeNd~yL 260 (1324)
.++...|-.++|---+.|+
T Consensus 162 ~dh~~yvqgvawDpl~qyv 180 (434)
T KOG1009|consen 162 DDHEHYVQGVAWDPLNQYV 180 (434)
T ss_pred cccccccceeecchhhhhh
Confidence 1223467788885433343
No 243
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=92.03 E-value=0.71 Score=56.65 Aligned_cols=108 Identities=15% Similarity=0.092 Sum_probs=80.6
Q ss_pred CCCeeEEEEecCCCEEEEEeecCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCC-eEEEEEeCCeEEEEE
Q 000733 106 NENVDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPEN-SFLALSNVGRLYRGG 184 (1324)
Q Consensus 106 ~s~VshLAFSsDEs~LAVcaesGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~as-lLAVVSsDGsL~Vld 184 (1324)
.+.|.+|+.+.||..|+... .+-.|.|||.- ..+++..|.+++-+.|..++|=|-.++ .++.+..|..++++|
T Consensus 50 ~GCVN~LeWn~dG~lL~SGS-DD~r~ivWd~~-----~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfd 123 (758)
T KOG1310|consen 50 TGCVNCLEWNADGELLASGS-DDTRLIVWDPF-----EYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFD 123 (758)
T ss_pred cceecceeecCCCCEEeecC-CcceEEeecch-----hcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEe
Confidence 34699999999999887765 45689999965 367788888887788999999997655 555667899999999
Q ss_pred eCC---Cceee------------ecceeEEEeccCC-CEEEEEecCc-eEEE
Q 000733 185 VNG---PLEDV------------MDNVDAVEWSVKG-KFVAVAKKNV-LSIL 219 (1324)
Q Consensus 185 l~e---~lk~V------------asgVScVcWSPKG-KQLVVGlaDG-IsQy 219 (1324)
+.. +.... ...|.-++=.|.| ...-.+..|| |.||
T Consensus 124 l~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQy 175 (758)
T KOG1310|consen 124 LDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQY 175 (758)
T ss_pred cccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeee
Confidence 963 11111 2455555555888 5556678999 9999
No 244
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=91.94 E-value=0.61 Score=49.02 Aligned_cols=30 Identities=30% Similarity=0.385 Sum_probs=24.7
Q ss_pred cceeEEEeccCCC------EEEEEecCc-eEEEccCc
Q 000733 194 DNVDAVEWSVKGK------FVAVAKKNV-LSILTSKL 223 (1324)
Q Consensus 194 sgVScVcWSPKGK------QLVVGlaDG-IsQyTPDg 223 (1324)
..|.+++|||.|= .||+-+.+| |.+|.+..
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 4899999999653 688889999 99998754
No 245
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=91.61 E-value=3.5 Score=48.98 Aligned_cols=92 Identities=11% Similarity=0.165 Sum_probs=68.6
Q ss_pred CEEEEEeecCCeEEEEEcccccCCCCcceeEEec-CCCcceEEEEecCCCCCeEEEEEeCCeEEEEEeCCCcee-----e
Q 000733 119 STLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSL-NGSTYVKDIRWRKKPENSFLALSNVGRLYRGGVNGPLED-----V 192 (1324)
Q Consensus 119 s~LAVcaesGg~L~VYDV~SLlng~t~P~~sisL-n~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl~e~lk~-----V 192 (1324)
.+|.+.. .++.|.+|||...+ =++ .| +++.-|+.+++.|... .++-|..|++|.|||++...-+ +
T Consensus 305 ~~l~s~S-rDktIk~wdv~tg~-----cL~--tL~ghdnwVr~~af~p~Gk-yi~ScaDDktlrvwdl~~~~cmk~~~ah 375 (406)
T KOG0295|consen 305 QVLGSGS-RDKTIKIWDVSTGM-----CLF--TLVGHDNWVRGVAFSPGGK-YILSCADDKTLRVWDLKNLQCMKTLEAH 375 (406)
T ss_pred cEEEeec-ccceEEEEeccCCe-----EEE--EEecccceeeeeEEcCCCe-EEEEEecCCcEEEEEeccceeeeccCCC
Confidence 4555544 56799999998752 223 33 4456799999999655 7999999999999999875322 2
Q ss_pred ecceeEEEeccCCCEEEEEecCc-eEEE
Q 000733 193 MDNVDAVEWSVKGKFVAVAKKNV-LSIL 219 (1324)
Q Consensus 193 asgVScVcWSPKGKQLVVGlaDG-IsQy 219 (1324)
.--|+|+++-..--+++.|.-|- +..|
T Consensus 376 ~hfvt~lDfh~~~p~VvTGsVdqt~Kvw 403 (406)
T KOG0295|consen 376 EHFVTSLDFHKTAPYVVTGSVDQTVKVW 403 (406)
T ss_pred cceeEEEecCCCCceEEeccccceeeee
Confidence 35789999988878999998876 6655
No 246
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=91.57 E-value=1.4 Score=57.69 Aligned_cols=178 Identities=15% Similarity=0.103 Sum_probs=102.4
Q ss_pred eeecCCccccccCCCCC-----CCCCCCCCcceE---eeCCcc-eEEEEEcCCc-eEEEEehHHHHHHhhcccCCccccc
Q 000733 25 FDEIGESIPIIRDDDSQ-----FDLQNPPSLPLA---VSQLSH-QLIFAAHSSG-FCVARTNDVIDAAKEMKENGTRCCV 94 (1324)
Q Consensus 25 FK~Lgk~vslLRLfss~-----~dLP~~~sSLLA---VSN~K~-GLvfAAgpdG-LvVarTsDLr~a~ksa~en~tv~~~ 94 (1324)
-..+++++-.+||-|.- .|+|..+.++.. ... .+ ++++||-.+| +.++ |.|.+.... .
T Consensus 1179 ~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~-~~gn~i~AGfaDGsvRvy---D~R~a~~ds---~----- 1246 (1387)
T KOG1517|consen 1179 HLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADL-VHGNIIAAGFADGSVRVY---DRRMAPPDS---L----- 1246 (1387)
T ss_pred eEEecCCeeEEEEEecccceeEeecccCCCccceeecccc-cCCceEEEeecCCceEEe---ecccCCccc---c-----
Confidence 33444545556654432 366766544432 233 34 5677777888 4444 444332111 0
Q ss_pred ccceeeeecCC-CCCeeEEEEecCCCEEEEEeecCCeEEEEEcccccCCCCcceeEEecC--CCcceEEEEecCCCCCeE
Q 000733 95 QELSVVDVPFE-NENVDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLN--GSTYVKDIRWRKKPENSF 171 (1324)
Q Consensus 95 ~dl~vi~VPLp-~s~VshLAFSsDEs~LAVcaesGg~L~VYDV~SLlng~t~P~~sisLn--~st~VrdLaWNP~~aslL 171 (1324)
++ +.-+-. ..+|-|+.|...|..=+|.+.++|.|.+||++.- ....+.++... -|..+.+|.--+. +..+
T Consensus 1247 --v~-~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~---~~e~~~~iv~~~~yGs~lTal~VH~h-apii 1319 (1387)
T KOG1517|consen 1247 --VC-VYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMS---SKETFLTIVAHWEYGSALTALTVHEH-APII 1319 (1387)
T ss_pred --ce-eecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccC---cccccceeeeccccCccceeeeeccC-CCee
Confidence 01 011100 0148899998866652333334789999999962 23333344331 1234666665543 3334
Q ss_pred EEEEeCCeEEEEEeCCCc-eee----------ecceeEEEeccCCCEEEEEecCc-eEEEccC
Q 000733 172 LALSNVGRLYRGGVNGPL-EDV----------MDNVDAVEWSVKGKFVAVAKKNV-LSILTSK 222 (1324)
Q Consensus 172 AVVSsDGsL~Vldl~e~l-k~V----------asgVScVcWSPKGKQLVVGlaDG-IsQyTPD 222 (1324)
| +.+-+.+.||++.++. ..+ ...++|.++.|---+||+|..|. |.+|+++
T Consensus 1320 A-sGs~q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~ 1381 (1387)
T KOG1517|consen 1320 A-SGSAQLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCE 1381 (1387)
T ss_pred e-ecCcceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecC
Confidence 4 4444899999997542 111 15679999999999999998888 9999874
No 247
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=91.08 E-value=0.61 Score=55.52 Aligned_cols=106 Identities=15% Similarity=0.185 Sum_probs=74.0
Q ss_pred CeeEEEEecCCCEEEEEeecCCeEEEEEccccc--CCCC-----cc-eeEEe-c-CCCcceEEEEecCCCCCeEEEEEeC
Q 000733 108 NVDILSLSNDESTLAVSLYQSPHIHFFSVHSLL--NKEI-----KP-SFSCS-L-NGSTYVKDIRWRKKPENSFLALSNV 177 (1324)
Q Consensus 108 ~VshLAFSsDEs~LAVcaesGg~L~VYDV~SLl--ng~t-----~P-~~sis-L-n~st~VrdLaWNP~~aslLAVVSsD 177 (1324)
-|..|-|+++|..||.|. .||.|.+|-..+-- ..++ .+ .-... + .+...|.+|+|.|+.. .++.-+-|
T Consensus 67 aVN~vRf~p~gelLASg~-D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~-~l~s~s~d 144 (434)
T KOG1009|consen 67 AVNVVRFSPDGELLASGG-DGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSN-FLVSGSVD 144 (434)
T ss_pred eeEEEEEcCCcCeeeecC-CCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCc-eeeeeecc
Confidence 689999999999998887 56799999766310 0111 11 11111 2 3446799999999765 56666789
Q ss_pred CeEEEEEeCCCceee-----ecceeEEEeccCCCEEEEEecCc
Q 000733 178 GRLYRGGVNGPLEDV-----MDNVDAVEWSVKGKFVAVAKKNV 215 (1324)
Q Consensus 178 GsL~Vldl~e~lk~V-----asgVScVcWSPKGKQLVVGlaDG 215 (1324)
.++++||+..+.... ..-|--|||-|-+++|+.=..|-
T Consensus 145 ns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr 187 (434)
T KOG1009|consen 145 NSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDR 187 (434)
T ss_pred ceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCc
Confidence 999999998763321 24677899999999998655553
No 248
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=90.81 E-value=0.77 Score=35.85 Aligned_cols=30 Identities=20% Similarity=0.241 Sum_probs=26.5
Q ss_pred CCcceEEEEecCCCCCeEEEEEeCCeEEEEE
Q 000733 154 GSTYVKDIRWRKKPENSFLALSNVGRLYRGG 184 (1324)
Q Consensus 154 ~st~VrdLaWNP~~aslLAVVSsDGsL~Vld 184 (1324)
+...|.++.|+|. ...||.+..||+|++||
T Consensus 10 h~~~i~~i~~~~~-~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 10 HSSSINSIAWSPD-GNFLASGSSDGTIRVWD 39 (39)
T ss_dssp SSSSEEEEEEETT-SSEEEEEETTSEEEEEE
T ss_pred CCCcEEEEEEecc-cccceeeCCCCEEEEEC
Confidence 3478999999997 55899999999999997
No 249
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=90.59 E-value=3.6 Score=54.57 Aligned_cols=147 Identities=15% Similarity=0.216 Sum_probs=90.9
Q ss_pred CCeeEEEEecCCCEEEEEeecCCeEEEEEccccc---CCCC-------------------ccee--------EEecCCCc
Q 000733 107 ENVDILSLSNDESTLAVSLYQSPHIHFFSVHSLL---NKEI-------------------KPSF--------SCSLNGST 156 (1324)
Q Consensus 107 s~VshLAFSsDEs~LAVcaesGg~L~VYDV~SLl---ng~t-------------------~P~~--------sisLn~st 156 (1324)
..|...+.|+||.+|++.. |....++.+.+|- .+.. ..|. .-.+.+..
T Consensus 110 ~GI~aaswS~Dee~l~liT--~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek 187 (1265)
T KOG1920|consen 110 NGISAASWSPDEELLALIT--GRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEK 187 (1265)
T ss_pred CceEEEeecCCCcEEEEEe--CCcEEEEEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccc
Confidence 4699999999999999888 5555555554321 1100 0011 00000000
Q ss_pred c---------eEEEEecCCCCCeEEE-----EEeCCeEEEEEeCCCceee----ecceeEEEeccCCCEEEEEecC---c
Q 000733 157 Y---------VKDIRWRKKPENSFLA-----LSNVGRLYRGGVNGPLEDV----MDNVDAVEWSVKGKFVAVAKKN---V 215 (1324)
Q Consensus 157 ~---------VrdLaWNP~~aslLAV-----VSsDGsL~Vldl~e~lk~V----asgVScVcWSPKGKQLVVGlaD---G 215 (1324)
. =..+.|.= ....||| .+....+.|||-.+.+..+ ..-=.|++|-|-|.-|++-..+ +
T Consensus 188 ~~~~~~~~~~~~~IsWRg-Dg~~fAVs~~~~~~~~RkirV~drEg~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~ 266 (1265)
T KOG1920|consen 188 ALEQIEQDDHKTSISWRG-DGEYFAVSFVESETGTRKIRVYDREGALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDS 266 (1265)
T ss_pred cccchhhccCCceEEEcc-CCcEEEEEEEeccCCceeEEEecccchhhcccCcccccccceeecCCCCeEeeeeecCCCC
Confidence 0 11366743 4457777 3444789999886433222 2334699999999999887555 3
Q ss_pred -eEEEccCcccccccccCccccCCCCCCCCceeEEEEEEecCCeEEEEEE
Q 000733 216 -LSILTSKLKERLPISLSFKSWVGDCDVNCSVKVDSIRWVRRDCIIIGCF 264 (1324)
Q Consensus 216 -IsQyTPDgeeKkvIP~Pf~S~I~D~d~d~sV~V~SI~WLeNd~yLFg~v 264 (1324)
|.+|-++|-....+..|++ . +..+|..|+|.++..++.+..
T Consensus 267 ~IvffErNGL~hg~f~l~~p-----~---de~~ve~L~Wns~sdiLAv~~ 308 (1265)
T KOG1920|consen 267 DIVFFERNGLRHGEFVLPFP-----L---DEKEVEELAWNSNSDILAVVT 308 (1265)
T ss_pred cEEEEecCCccccccccCCc-----c---cccchheeeecCCCCceeeee
Confidence 9999999988887666631 1 123499999999987765544
No 250
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=90.54 E-value=1.9 Score=56.92 Aligned_cols=69 Identities=14% Similarity=0.269 Sum_probs=54.4
Q ss_pred cceEEEEecCCCCCeEEEEEeCCeEEEEEeCCCc----eeeecceeEEEeccCCCEEEEEecCc-eEEEccCccc
Q 000733 156 TYVKDIRWRKKPENSFLALSNVGRLYRGGVNGPL----EDVMDNVDAVEWSVKGKFVAVAKKNV-LSILTSKLKE 225 (1324)
Q Consensus 156 t~VrdLaWNP~~aslLAVVSsDGsL~Vldl~e~l----k~VasgVScVcWSPKGKQLVVGlaDG-IsQyTPDgee 225 (1324)
..|..+.+--.. +.+.|++..|.+.+.|..... ..+.+||.|+||||+++.++..+..+ |..+|-+++.
T Consensus 69 ~~i~s~~fl~d~-~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~ 142 (1265)
T KOG1920|consen 69 DEIVSVQFLADT-NSICVITALGDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEP 142 (1265)
T ss_pred cceEEEEEeccc-ceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccc
Confidence 477777775543 468888999999998775442 23458999999999999999999998 8888876654
No 251
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=90.34 E-value=1.5 Score=50.72 Aligned_cols=111 Identities=10% Similarity=0.064 Sum_probs=75.5
Q ss_pred CeeEEEEecCCCEEEEEeecCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEEEEeCC
Q 000733 108 NVDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGGVNG 187 (1324)
Q Consensus 108 ~VshLAFSsDEs~LAVcaesGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl~e 187 (1324)
+|.+|-+-++...||..+ ...|.+|++..-..-..+-...-+.+.-.....=+|||.....-...++|++|..||+..
T Consensus 125 ~i~cvew~Pns~klasm~--dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT 202 (370)
T KOG1007|consen 125 KINCVEWEPNSDKLASMD--DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRT 202 (370)
T ss_pred ceeeEEEcCCCCeeEEec--cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeCCCcEEEEEccc
Confidence 799999999999998888 679999998754321111111111111234556689997654455667899999999963
Q ss_pred Cce------eeecceeEEEeccCCCE-EEEEecCc-eEEEc
Q 000733 188 PLE------DVMDNVDAVEWSVKGKF-VAVAKKNV-LSILT 220 (1324)
Q Consensus 188 ~lk------~VasgVScVcWSPKGKQ-LVVGlaDG-IsQyT 220 (1324)
--+ .+...|..+.+-|+-.. ||.++.|| |.+|.
T Consensus 203 ~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD 243 (370)
T KOG1007|consen 203 MKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWD 243 (370)
T ss_pred hhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEe
Confidence 211 12467999999998664 56777778 99994
No 252
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=90.33 E-value=3 Score=54.70 Aligned_cols=127 Identities=13% Similarity=0.103 Sum_probs=82.2
Q ss_pred eeeecCC-CCCeeEEEEecCC-CEEEEEeecCCeEEEEEcccccCCCCcceeEEec-CCCcceEEEEecCCCCCeEEEEE
Q 000733 99 VVDVPFE-NENVDILSLSNDE-STLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSL-NGSTYVKDIRWRKKPENSFLALS 175 (1324)
Q Consensus 99 vi~VPLp-~s~VshLAFSsDE-s~LAVcaesGg~L~VYDV~SLlng~t~P~~sisL-n~st~VrdLaWNP~~aslLAVVS 175 (1324)
+.++|.. +.-|+.|.-+-++ ..+|+. -.+|.|++||++.--. ..+...++- +.-..|.-+..++..-..++..+
T Consensus 1200 ~~diP~~s~t~vTaLS~~~~~gn~i~AG-faDGsvRvyD~R~a~~--ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs 1276 (1387)
T KOG1517|consen 1200 VADIPYGSSTLVTALSADLVHGNIIAAG-FADGSVRVYDRRMAPP--DSLVCVYREHNDVEPIVHLSLQRQGLGELVSGS 1276 (1387)
T ss_pred EeecccCCCccceeecccccCCceEEEe-ecCCceEEeecccCCc--cccceeecccCCcccceeEEeecCCCcceeeec
Confidence 3566655 1134444333333 544443 3478999999985322 344444443 21123888888885433577778
Q ss_pred eCCeEEEEEeCCC-----ceeee----c-ceeEEEeccCCCEEEEEecCc-eEEEccCccccccc
Q 000733 176 NVGRLYRGGVNGP-----LEDVM----D-NVDAVEWSVKGKFVAVAKKNV-LSILTSKLKERLPI 229 (1324)
Q Consensus 176 sDGsL~Vldl~e~-----lk~Va----s-gVScVcWSPKGKQLVVGlaDG-IsQyTPDgeeKkvI 229 (1324)
.||.+++||+... ...+. + .+||+.-.+.-.-||+|++ + |.+|+-.|+.-..|
T Consensus 1277 ~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~ 1340 (1387)
T KOG1517|consen 1277 QDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNII 1340 (1387)
T ss_pred cCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhhhccc
Confidence 8999999999652 12222 2 3999999999999999999 8 99999888765555
No 253
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=90.30 E-value=9.6 Score=45.64 Aligned_cols=58 Identities=22% Similarity=0.470 Sum_probs=41.4
Q ss_pred cceeEEEeccCCCEEEEEecCc-eEEEccCcccccccccCccccCCCCCCCCceeEEEEEEecCCeEEE
Q 000733 194 DNVDAVEWSVKGKFVAVAKKNV-LSILTSKLKERLPISLSFKSWVGDCDVNCSVKVDSIRWVRRDCIII 261 (1324)
Q Consensus 194 sgVScVcWSPKGKQLVVGlaDG-IsQyTPDgeeKkvIP~Pf~S~I~D~d~d~sV~V~SI~WLeNd~yLF 261 (1324)
..+..++-||.|+.||.-..+| +.+++.|+..+- +-+ +-+.......+.|..++..++
T Consensus 217 ~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~---~e~-------~~~~~~~p~~~~WCG~dav~l 275 (410)
T PF04841_consen 217 GPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKL---CEF-------DTDSKSPPKQMAWCGNDAVVL 275 (410)
T ss_pred CCeEEEEECCCCCEEEEEECCCCEEEEECccccee---EEe-------ecCcCCCCcEEEEECCCcEEE
Confidence 4588999999999999999999 999988876432 111 111123567899999985433
No 254
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.15 E-value=4.7 Score=48.38 Aligned_cols=104 Identities=13% Similarity=0.104 Sum_probs=64.7
Q ss_pred CeeEEEEecCCCEEEEEeecCCeEEEEEcccccC--------C------------CCcceeEEe--cCCC----------
Q 000733 108 NVDILSLSNDESTLAVSLYQSPHIHFFSVHSLLN--------K------------EIKPSFSCS--LNGS---------- 155 (1324)
Q Consensus 108 ~VshLAFSsDEs~LAVcaesGg~L~VYDV~SLln--------g------------~t~P~~sis--Ln~s---------- 155 (1324)
.|..|.||.|+.+||... +....||++++... + +.++...+- ..++
T Consensus 188 eV~DL~FS~dgk~lasig--~d~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~ 265 (398)
T KOG0771|consen 188 EVKDLDFSPDGKFLASIG--ADSARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISL 265 (398)
T ss_pred ccccceeCCCCcEEEEec--CCceEEEEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeee
Confidence 477888999998887776 55888999887611 0 111111110 0111
Q ss_pred ----------------cceEEEEecCCCCCeEEEEEeCCeEEEEEeCCC--cee----eecceeEEEeccCCCEEEEEec
Q 000733 156 ----------------TYVKDIRWRKKPENSFLALSNVGRLYRGGVNGP--LED----VMDNVDAVEWSVKGKFVAVAKK 213 (1324)
Q Consensus 156 ----------------t~VrdLaWNP~~aslLAVVSsDGsL~Vldl~e~--lk~----VasgVScVcWSPKGKQLVVGla 213 (1324)
..|..|.-+++ ...+|+-+.||.+.|++...= ... +..-||.+.+||+-..++.-+.
T Consensus 266 w~~~~~l~~~~~~~~~~siSsl~VS~d-Gkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs 344 (398)
T KOG0771|consen 266 WSGSNFLRLRKKIKRFKSISSLAVSDD-GKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSS 344 (398)
T ss_pred eccccccchhhhhhccCcceeEEEcCC-CcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCccccccc
Confidence 13444444443 347888899999999998642 111 2368999999999888876444
Q ss_pred C
Q 000733 214 N 214 (1324)
Q Consensus 214 D 214 (1324)
+
T Consensus 345 ~ 345 (398)
T KOG0771|consen 345 D 345 (398)
T ss_pred C
Confidence 4
No 255
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=89.92 E-value=1.1 Score=51.80 Aligned_cols=107 Identities=14% Similarity=0.209 Sum_probs=76.2
Q ss_pred CCeeEEEEec--CCCEEEEEeecCCeEEEEEcccccCCCCcceeEEec-CCCcceEEEEecCCCCCeEEEEEeCCeEEEE
Q 000733 107 ENVDILSLSN--DESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSL-NGSTYVKDIRWRKKPENSFLALSNVGRLYRG 183 (1324)
Q Consensus 107 s~VshLAFSs--DEs~LAVcaesGg~L~VYDV~SLlng~t~P~~sisL-n~st~VrdLaWNP~~aslLAVVSsDGsL~Vl 183 (1324)
+.|..-|+|+ ---.|+++.+.+..|++-|+++-. ++..| ++-..|.++.|+|...-.+|.-+.||.++.|
T Consensus 144 ~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs-------~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlW 216 (397)
T KOG4283|consen 144 GKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGS-------FSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLW 216 (397)
T ss_pred ceeehhhcChhhhcceEEEEecCCCcEEEEeccCCc-------ceeeeccccCceEEEEeccCceeEEEecCCCceEEEE
Confidence 3466556654 223577777788999999887632 34445 3336799999999877678888999999999
Q ss_pred EeCCC---ce-----------------eeecceeEEEeccCCCEEEEEecCc-eEEEc
Q 000733 184 GVNGP---LE-----------------DVMDNVDAVEWSVKGKFVAVAKKNV-LSILT 220 (1324)
Q Consensus 184 dl~e~---lk-----------------~VasgVScVcWSPKGKQLVVGlaDG-IsQyT 220 (1324)
|+... +. .+.+.|-.+||+.+|.|++..+-|. +..|-
T Consensus 217 DiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn 274 (397)
T KOG4283|consen 217 DIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWN 274 (397)
T ss_pred EeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEee
Confidence 99532 11 1125788999999999997666565 77774
No 256
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=89.57 E-value=1.2 Score=51.96 Aligned_cols=65 Identities=12% Similarity=0.151 Sum_probs=52.3
Q ss_pred cceEEEEecCCCCCeEEEEEeCCeEEEEEeCCCc--------eeeecceeEEEeccCCCEEEEEecCc-eEEEcc
Q 000733 156 TYVKDIRWRKKPENSFLALSNVGRLYRGGVNGPL--------EDVMDNVDAVEWSVKGKFVAVAKKNV-LSILTS 221 (1324)
Q Consensus 156 t~VrdLaWNP~~aslLAVVSsDGsL~Vldl~e~l--------k~VasgVScVcWSPKGKQLVVGlaDG-IsQyTP 221 (1324)
..|.+.+||++.. .+|++.++-.+.|+...+.. +.+-..|++|||+|++..||.+..|- -..|+.
T Consensus 11 ~pitchAwn~drt-~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~ 84 (361)
T KOG1523|consen 11 EPITCHAWNSDRT-QIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQ 84 (361)
T ss_pred CceeeeeecCCCc-eEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCcccccc
Confidence 4689999999766 69999999999999765331 23346899999999999999999997 666653
No 257
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=89.45 E-value=2.6 Score=51.67 Aligned_cols=163 Identities=15% Similarity=0.138 Sum_probs=87.9
Q ss_pred CCCcceEeeCCcceEEEEEcCCceEE--EEehHHHHHHhhcccC---------------Ccccccc--cceeeeec----
Q 000733 47 PPSLPLAVSQLSHQLIFAAHSSGFCV--ARTNDVIDAAKEMKEN---------------GTRCCVQ--ELSVVDVP---- 103 (1324)
Q Consensus 47 ~~sSLLAVSN~K~GLvfAAgpdGLvV--arTsDLr~a~ksa~en---------------~tv~~~~--dl~vi~VP---- 103 (1324)
+....|+-.. ..|+.+-+++.+-++ ++..+|.....++.++ +..++.- .+++|++.
T Consensus 42 P~G~~l~~~~-~~~V~~~~g~~~~~l~~~~~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~i 120 (561)
T COG5354 42 PLGTYLFSEH-AAGVECWGGPSKAKLVRFRHPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMI 120 (561)
T ss_pred Ccchheehhh-ccceEEccccchhheeeeecCCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCcee
Confidence 4456777777 888888888876444 3455665444332211 2222222 23444432
Q ss_pred -----CCCC-Ce-e-EEEEecCCCEEEEEeecCCeEEEEE-cccccCCCCc-------------c------eeEEec---
Q 000733 104 -----FENE-NV-D-ILSLSNDESTLAVSLYQSPHIHFFS-VHSLLNKEIK-------------P------SFSCSL--- 152 (1324)
Q Consensus 104 -----Lp~s-~V-s-hLAFSsDEs~LAVcaesGg~L~VYD-V~SLlng~t~-------------P------~~sisL--- 152 (1324)
.... .+ . .+-|++|+.++|=.+ |..|+||+ +..+...... | ++.|..
T Consensus 121 v~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv--~~sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~ 198 (561)
T COG5354 121 VFSFNGISQPYLGWPVLKFSIDDKYVARVV--GSSLYIHEITDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKL 198 (561)
T ss_pred EeeccccCCcccccceeeeeecchhhhhhc--cCeEEEEecCCccccCchhhccccceeeEEecCCCCCceEEEEccccC
Confidence 1111 11 2 579999999887776 78999999 4443322111 0 111111
Q ss_pred -----------CCC----------cceEEEEecCCCCCeEEEE-Ee---------CCeEEEEEeCCC-c--e-eeeccee
Q 000733 153 -----------NGS----------TYVKDIRWRKKPENSFLAL-SN---------VGRLYRGGVNGP-L--E-DVMDNVD 197 (1324)
Q Consensus 153 -----------n~s----------t~VrdLaWNP~~aslLAVV-Ss---------DGsL~Vldl~e~-l--k-~VasgVS 197 (1324)
.-+ ..-.+|+||+....+|.++ +. .-+||++++.+. . . .+.+.|-
T Consensus 199 ~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~~~~~pVh 278 (561)
T COG5354 199 NKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEKDLKDPVH 278 (561)
T ss_pred CCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceeccccccce
Confidence 000 1113566666544333332 11 145777777643 1 1 3357888
Q ss_pred EEEeccCCCEEEEEe
Q 000733 198 AVEWSVKGKFVAVAK 212 (1324)
Q Consensus 198 cVcWSPKGKQLVVGl 212 (1324)
.+||+|++++.++..
T Consensus 279 df~W~p~S~~F~vi~ 293 (561)
T COG5354 279 DFTWEPLSSRFAVIS 293 (561)
T ss_pred eeeecccCCceeEEe
Confidence 999999999987765
No 258
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=89.14 E-value=9.5 Score=42.66 Aligned_cols=143 Identities=14% Similarity=0.129 Sum_probs=79.8
Q ss_pred CeeEEEEecCCCEEEEEeecCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEEEE-eC
Q 000733 108 NVDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGG-VN 186 (1324)
Q Consensus 108 ~VshLAFSsDEs~LAVcaesGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vld-l~ 186 (1324)
.+...|+|.|+..+|+....++.-.+|-... .+....+. .+..+..-.|.|. ....++...++...++. ..
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~-----~g~~l~~PS~d~~-g~~W~v~~~~~~~~~~~~~~ 96 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPA--GGPVRPVL-----TGGSLTRPSWDPD-GWVWTVDDGSGGVRVVRDSA 96 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcC--CCcceeec-----cCCccccccccCC-CCEEEEEcCCCceEEEEecC
Confidence 5889999999998776663333334443332 12233322 1246777788887 44566656555555542 22
Q ss_pred -CCcee--e-----ecceeEEEeccCCCEEEEEecC---c-eEEEc--cCccc-ccccccCccccCCCCCCCCceeEEEE
Q 000733 187 -GPLED--V-----MDNVDAVEWSVKGKFVAVAKKN---V-LSILT--SKLKE-RLPISLSFKSWVGDCDVNCSVKVDSI 251 (1324)
Q Consensus 187 -e~lk~--V-----asgVScVcWSPKGKQLVVGlaD---G-IsQyT--PDgee-KkvIP~Pf~S~I~D~d~d~sV~V~SI 251 (1324)
..... + ...|+++.|||+|+.||+-..+ | |.+.. .+... ...+..|.. + .......|.++
T Consensus 97 ~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~--~---~~~~~~~v~~v 171 (253)
T PF10647_consen 97 SGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRR--V---APPLLSDVTDV 171 (253)
T ss_pred CCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceE--e---cccccCcceee
Confidence 22111 1 1279999999999999988743 3 55442 22111 222333320 1 01112368999
Q ss_pred EEecCCeEEEEE
Q 000733 252 RWVRRDCIIIGC 263 (1324)
Q Consensus 252 ~WLeNd~yLFg~ 263 (1324)
.|.....++++.
T Consensus 172 ~W~~~~~L~V~~ 183 (253)
T PF10647_consen 172 AWSDDSTLVVLG 183 (253)
T ss_pred eecCCCEEEEEe
Confidence 999888665554
No 259
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=88.48 E-value=5.4 Score=47.29 Aligned_cols=75 Identities=12% Similarity=0.037 Sum_probs=48.9
Q ss_pred CeeEEEEecCCCEEEEEee---------cCCeEEEEEcccccCCCCcceeEEecCC------CcceEEEEecCCCCCeEE
Q 000733 108 NVDILSLSNDESTLAVSLY---------QSPHIHFFSVHSLLNKEIKPSFSCSLNG------STYVKDIRWRKKPENSFL 172 (1324)
Q Consensus 108 ~VshLAFSsDEs~LAVcae---------sGg~L~VYDV~SLlng~t~P~~sisLn~------st~VrdLaWNP~~aslLA 172 (1324)
+++++ +|+|+..|+||.. ....|.+||+.++.. ..++.+.+ +..-..++.+|+...+|+
T Consensus 48 ~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~-----~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V 121 (352)
T TIGR02658 48 LPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLP-----IADIELPEGPRFLVGTYPWMTSLTPDNKTLLF 121 (352)
T ss_pred CCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcE-----EeEEccCCCchhhccCccceEEECCCCCEEEE
Confidence 46665 9999999999998 678999999998643 33444421 122346677775543222
Q ss_pred EE-EeCCeEEEEEeCCC
Q 000733 173 AL-SNVGRLYRGGVNGP 188 (1324)
Q Consensus 173 VV-SsDGsL~Vldl~e~ 188 (1324)
.= +.+..+.|.|+...
T Consensus 122 ~n~~p~~~V~VvD~~~~ 138 (352)
T TIGR02658 122 YQFSPSPAVGVVDLEGK 138 (352)
T ss_pred ecCCCCCEEEEEECCCC
Confidence 22 22777788887655
No 260
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=88.15 E-value=0.79 Score=31.97 Aligned_cols=26 Identities=27% Similarity=0.470 Sum_probs=20.6
Q ss_pred cceeEEEeccCCCEEEEEecCc-eEEE
Q 000733 194 DNVDAVEWSVKGKFVAVAKKNV-LSIL 219 (1324)
Q Consensus 194 sgVScVcWSPKGKQLVVGlaDG-IsQy 219 (1324)
..|.|++|.+++..+++|..|| +.+|
T Consensus 13 ~~i~~~~~~~~~~~~~~~~~d~~~~~~ 39 (40)
T smart00320 13 GPVTSVAFSPDGKYLASASDDGTIKLW 39 (40)
T ss_pred CceeEEEECCCCCEEEEecCCCeEEEc
Confidence 4678888888888888888888 7666
No 261
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=87.93 E-value=8.2 Score=47.38 Aligned_cols=97 Identities=21% Similarity=0.137 Sum_probs=66.4
Q ss_pred ceEEEEecCCCCCeEEEEEeCC-eEEEEEeCCC-ceeee---cceeEEEeccCCCEEEEEecCc-eEEEccCcccccccc
Q 000733 157 YVKDIRWRKKPENSFLALSNVG-RLYRGGVNGP-LEDVM---DNVDAVEWSVKGKFVAVAKKNV-LSILTSKLKERLPIS 230 (1324)
Q Consensus 157 ~VrdLaWNP~~aslLAVVSsDG-sL~Vldl~e~-lk~Va---sgVScVcWSPKGKQLVVGlaDG-IsQyTPDgeeKkvIP 230 (1324)
.||-....-. ++.+++-+.|| .|-|+|...+ ++.+. +++-++.-||+||.+|+|...+ |..+.-+-...+.|-
T Consensus 361 ~VrY~r~~~~-~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~id 439 (668)
T COG4946 361 GVRYRRIQVD-PEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLID 439 (668)
T ss_pred ceEEEEEccC-CcceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEec
Confidence 3544444332 34789999999 8999999755 34442 7899999999999999998887 777754333334444
Q ss_pred cCccccCCCCCCCCceeEEEEEEecCCeEEEEEEee
Q 000733 231 LSFKSWVGDCDVNCSVKVDSIRWVRRDCIIIGCFQL 266 (1324)
Q Consensus 231 ~Pf~S~I~D~d~d~sV~V~SI~WLeNd~yLFg~vys 266 (1324)
.. ..--+.++.|..|..| |+|...
T Consensus 440 kS-----------~~~lItdf~~~~nsr~-iAYafP 463 (668)
T COG4946 440 KS-----------EYGLITDFDWHPNSRW-IAYAFP 463 (668)
T ss_pred cc-----------ccceeEEEEEcCCcee-EEEecC
Confidence 32 1125889999988654 677653
No 262
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=87.84 E-value=1.2 Score=58.82 Aligned_cols=70 Identities=17% Similarity=0.097 Sum_probs=55.1
Q ss_pred CCcceEEEEecCCCCCeEEEEEeCCeEEEEEeCCCc----e----e----eecceeEEEeccCCCEEEEEecCc-eEEEc
Q 000733 154 GSTYVKDIRWRKKPENSFLALSNVGRLYRGGVNGPL----E----D----VMDNVDAVEWSVKGKFVAVAKKNV-LSILT 220 (1324)
Q Consensus 154 ~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl~e~l----k----~----VasgVScVcWSPKGKQLVVGlaDG-IsQyT 220 (1324)
++..|..++-++...++|+.+++||++.|||+.+-. . . ..+.|.|+...+-|.|+|+|++|| |..+.
T Consensus 1047 hs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~ 1126 (1431)
T KOG1240|consen 1047 HSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLR 1126 (1431)
T ss_pred ccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEE
Confidence 445566788888777899999999999999985311 0 1 137899999999999999999999 77776
Q ss_pred cCc
Q 000733 221 SKL 223 (1324)
Q Consensus 221 PDg 223 (1324)
-|-
T Consensus 1127 id~ 1129 (1431)
T KOG1240|consen 1127 IDH 1129 (1431)
T ss_pred ccc
Confidence 554
No 263
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=87.62 E-value=10 Score=49.33 Aligned_cols=159 Identities=13% Similarity=0.074 Sum_probs=94.1
Q ss_pred CCCcceEeeCCcceEEEEEcCCceEEEEehH--HHHHHhhcccCCcccccccceeeeecCCCCCeeEEEEecCCCEEEEE
Q 000733 47 PPSLPLAVSQLSHQLIFAAHSSGFCVARTND--VIDAAKEMKENGTRCCVQELSVVDVPFENENVDILSLSNDESTLAVS 124 (1324)
Q Consensus 47 ~~sSLLAVSN~K~GLvfAAgpdGLvVarTsD--Lr~a~ksa~en~tv~~~~dl~vi~VPLp~s~VshLAFSsDEs~LAVc 124 (1324)
..-+-|||+- ++...|+.+++++-|++..+ -++. ... .+.+ .. .....-.+..+-+...++.|+..
T Consensus 431 ~~n~~Lavg~-k~DrSfVvRg~~igVFk~~~~~~l~f-~t~-i~~i----~~-----~~g~~~~P~k~mL~~~d~~mil~ 498 (794)
T PF08553_consen 431 EKNSSLAVGY-KNDRSFVVRGSKIGVFKNTDDDGLEF-STA-ISNI----ST-----PKGKNFTPKKAMLHDQDRNMILL 498 (794)
T ss_pred CccceeEeee-ccCceEEECCCcEeEEECCCCCceee-eEE-eccc----cc-----CCCcccCcchhhhhccccceEee
Confidence 4567799998 88999999999999998764 1111 000 0000 00 00000012333334444445554
Q ss_pred ee-cCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCC----CCCeEEEEEeCCeEEEEEeC-CCceee------
Q 000733 125 LY-QSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKK----PENSFLALSNVGRLYRGGVN-GPLEDV------ 192 (1324)
Q Consensus 125 ae-sGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~----~aslLAVVSsDGsL~Vldl~-e~lk~V------ 192 (1324)
.. +...|+-.|+.. | .=+.+|.++...+|++++++-- .++-..+..++..|+.||-. .+.+++
T Consensus 499 ~~~~~~~ly~mDLe~---G--KVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~ 573 (794)
T PF08553_consen 499 DPNNPNKLYKMDLER---G--KVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQ 573 (794)
T ss_pred cCCCCCceEEEecCC---C--cEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccc
Confidence 43 234566666543 2 2244677755455888888642 12334555667778888864 222333
Q ss_pred ---ecceeEEEeccCCCEEEEEecCc-eEEEccCc
Q 000733 193 ---MDNVDAVEWSVKGKFVAVAKKNV-LSILTSKL 223 (1324)
Q Consensus 193 ---asgVScVcWSPKGKQLVVGlaDG-IsQyTPDg 223 (1324)
..+.+|+|=+-+| +||+|+.+| |..|...+
T Consensus 574 Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g 607 (794)
T PF08553_consen 574 YSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLG 607 (794)
T ss_pred cccCCCceEEEecCCc-eEEEEeCCCcEEeecccc
Confidence 2578999988888 699999999 99997655
No 264
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.38 E-value=5 Score=52.06 Aligned_cols=118 Identities=14% Similarity=0.144 Sum_probs=85.7
Q ss_pred CCCCCeeEEEEecCCCEEEEEeecCCeEEEEEcccccCCCCcce---------------e-------EEec-CCCcceEE
Q 000733 104 FENENVDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEIKPS---------------F-------SCSL-NGSTYVKD 160 (1324)
Q Consensus 104 Lp~s~VshLAFSsDEs~LAVcaesGg~L~VYDV~SLlng~t~P~---------------~-------sisL-n~st~Vrd 160 (1324)
.++..|-+-.|.+-|. |+|.+.=+-.|+|||+..|-.++..|- + ...+ ++...|+-
T Consensus 133 GHnHYVMcAqFhptED-lIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNw 211 (1202)
T KOG0292|consen 133 GHNHYVMCAQFHPTED-LIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNW 211 (1202)
T ss_pred cCceEEEeeccCCccc-eEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccce
Confidence 4455677778888665 455553367899999999887755554 1 1222 34566778
Q ss_pred EEecCCCCCeEEEEEeCCeEEEEEeCCCc-------eeeecceeEEEeccCCCEEEEEecCc-eEEEccCccc
Q 000733 161 IRWRKKPENSFLALSNVGRLYRGGVNGPL-------EDVMDNVDAVEWSVKGKFVAVAKKNV-LSILTSKLKE 225 (1324)
Q Consensus 161 LaWNP~~aslLAVVSsDGsL~Vldl~e~l-------k~VasgVScVcWSPKGKQLVVGlaDG-IsQyTPDgee 225 (1324)
.++-|+.+ +++--..|..+.+|..++.- .-+..+|+|+=+.|.-..|...+.|+ |.+| |++.
T Consensus 212 aAfhpTlp-liVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVw--Dm~k 281 (1202)
T KOG0292|consen 212 AAFHPTLP-LIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVW--DMTK 281 (1202)
T ss_pred EEecCCcc-eEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEE--eccc
Confidence 88888665 56666789999999886541 12358999999999999999999999 9999 5544
No 265
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=87.24 E-value=0.88 Score=58.47 Aligned_cols=105 Identities=14% Similarity=0.138 Sum_probs=74.7
Q ss_pred CCeEEEEEcccccCCCCcceeEEec--CCCcceEEEEecCCCCCeEEEE--EeCCeEEEEEeCCCc-ee-----------
Q 000733 128 SPHIHFFSVHSLLNKEIKPSFSCSL--NGSTYVKDIRWRKKPENSFLAL--SNVGRLYRGGVNGPL-ED----------- 191 (1324)
Q Consensus 128 Gg~L~VYDV~SLlng~t~P~~sisL--n~st~VrdLaWNP~~aslLAVV--SsDGsL~Vldl~e~l-k~----------- 191 (1324)
-|.+.||+|+- ++|+++|-....+ .-+..++-+.|+|-..+..-+| ..+|++.++++.... ++
T Consensus 152 vg~lfVy~vd~-l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~~l~rsHs~~~~d~ 230 (1283)
T KOG1916|consen 152 VGELFVYDVDV-LQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALRSLFRSHSQRVTDM 230 (1283)
T ss_pred hhhhheeehHh-hccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHHHHHHhcCCCcccH
Confidence 36899999987 7898888666554 2246789999999655444444 567888888775321 11
Q ss_pred --eeccee-EEEeccCCCEEEEEecCc-eEEEccCcccccccccCc
Q 000733 192 --VMDNVD-AVEWSVKGKFVAVAKKNV-LSILTSKLKERLPISLSF 233 (1324)
Q Consensus 192 --VasgVS-cVcWSPKGKQLVVGlaDG-IsQyTPDgeeKkvIP~Pf 233 (1324)
++++|. -...||||+-+|++..|| +..|-+-.+.+.+..|-+
T Consensus 231 a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclh 276 (1283)
T KOG1916|consen 231 AFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLH 276 (1283)
T ss_pred HHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhh
Confidence 123332 234789999999999999 888877777788888864
No 266
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=87.02 E-value=1.6 Score=56.42 Aligned_cols=104 Identities=13% Similarity=0.248 Sum_probs=77.6
Q ss_pred EEEEecCCCEEEEEeec--------CCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEE
Q 000733 111 ILSLSNDESTLAVSLYQ--------SPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYR 182 (1324)
Q Consensus 111 hLAFSsDEs~LAVcaes--------Gg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~V 182 (1324)
..+|.-.|+.|+.|..+ +..|.|||++.+-. ..|+- +..++ .-+++-|.....+||+++-|..-.
T Consensus 220 iSDfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmra--l~PI~-~~~~P----~flrf~Psl~t~~~V~S~sGq~q~ 292 (1118)
T KOG1275|consen 220 ISDFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRA--LSPIQ-FPYGP----QFLRFHPSLTTRLAVTSQSGQFQF 292 (1118)
T ss_pred eeeeeccCCeEEEeecccccccccccchhhhhhhhhhhc--cCCcc-cccCc----hhhhhcccccceEEEEecccceee
Confidence 34666678889999854 67899999998754 44432 22232 235566777889999999999998
Q ss_pred EE---eCCC---ceee---ecceeEEEeccCCCEEEEEecCc-eEEEcc
Q 000733 183 GG---VNGP---LEDV---MDNVDAVEWSVKGKFVAVAKKNV-LSILTS 221 (1324)
Q Consensus 183 ld---l~e~---lk~V---asgVScVcWSPKGKQLVVGlaDG-IsQyTP 221 (1324)
.| +.+. ..++ ..+++++|.|+.|.-||.|..+| |-.|++
T Consensus 293 vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 293 VDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred ccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence 88 4443 2222 36799999999999999999999 999963
No 267
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=87.00 E-value=6.3 Score=52.63 Aligned_cols=114 Identities=12% Similarity=0.082 Sum_probs=70.2
Q ss_pred CeeEEEEecCCCEEEEEeecCCeEEEEEccccc----CC-C-Cc--ceeEEecCCC-------cceEEEEecCCCCCeEE
Q 000733 108 NVDILSLSNDESTLAVSLYQSPHIHFFSVHSLL----NK-E-IK--PSFSCSLNGS-------TYVKDIRWRKKPENSFL 172 (1324)
Q Consensus 108 ~VshLAFSsDEs~LAVcaesGg~L~VYDV~SLl----ng-~-t~--P~~sisLn~s-------t~VrdLaWNP~~aslLA 172 (1324)
.+..|+|++|+..|.|+...+..|++||+.+-. .+ . .. .++.+--.++ ..-..++++|+. ..|+
T Consensus 741 ~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG-~LYV 819 (1057)
T PLN02919 741 QPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDG-QIYV 819 (1057)
T ss_pred CccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCC-cEEE
Confidence 577899999999899988777899999987421 11 0 00 0011000000 012355666643 3566
Q ss_pred EEEeCCeEEEEEeCCC-ceeee-----------------cceeEEEeccCCCEEEEEecCc-eEEEccC
Q 000733 173 ALSNVGRLYRGGVNGP-LEDVM-----------------DNVDAVEWSVKGKFVAVAKKNV-LSILTSK 222 (1324)
Q Consensus 173 VVSsDGsL~Vldl~e~-lk~Va-----------------sgVScVcWSPKGKQLVVGlaDG-IsQyTPD 222 (1324)
+-+.++.+.++|.... ...+. .....++++++|+.+|+-..|+ |..|..+
T Consensus 820 ADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~ 888 (1057)
T PLN02919 820 ADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLN 888 (1057)
T ss_pred EECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECC
Confidence 6666777888877543 11111 1456799999999777777778 9999653
No 268
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=86.94 E-value=3.3 Score=48.19 Aligned_cols=147 Identities=14% Similarity=0.151 Sum_probs=94.6
Q ss_pred eeecCCCCCeeEEEEecCCC-----EEEEEeecCCeEEEEEcccccCCCCcceeEEec----CCCcceEEEEecCCCCCe
Q 000733 100 VDVPFENENVDILSLSNDES-----TLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSL----NGSTYVKDIRWRKKPENS 170 (1324)
Q Consensus 100 i~VPLp~s~VshLAFSsDEs-----~LAVcaesGg~L~VYDV~SLlng~t~P~~sisL----n~st~VrdLaWNP~~asl 170 (1324)
.++|.| ++.|.|.+|-. .||.+ |-.|++|.+..= ..+..+-..+.. +..+++..|-||-...++
T Consensus 93 fd~~YP---~tK~~wiPd~~g~~pdlLATs---~D~LRlWri~~e-e~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~ 165 (364)
T KOG0290|consen 93 FDHPYP---VTKLMWIPDSKGVYPDLLATS---SDFLRLWRIGDE-ESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNL 165 (364)
T ss_pred CCCCCC---ccceEecCCccccCcchhhcc---cCeEEEEeccCc-CCceehhhhhccCcccccCCcccccccccCCcce
Confidence 356666 78888887763 34443 568999998731 111111111111 123789999999999999
Q ss_pred EEEEEeCCeEEEEEeCCCc------eeee--cceeEEEeccCCCEE-EEEecCc-eEEEccCccccc--ccccCccccCC
Q 000733 171 FLALSNVGRLYRGGVNGPL------EDVM--DNVDAVEWSVKGKFV-AVAKKNV-LSILTSKLKERL--PISLSFKSWVG 238 (1324)
Q Consensus 171 LAVVSsDGsL~Vldl~e~l------k~Va--sgVScVcWSPKGKQL-VVGlaDG-IsQyTPDgeeKk--vIP~Pf~S~I~ 238 (1324)
+.+.+-|-+..|||+..++ ++++ ..|--++|+.+|.++ |.-++|| +..| |+..+. +|-..
T Consensus 166 igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmF--DLR~leHSTIIYE------ 237 (364)
T KOG0290|consen 166 IGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMF--DLRSLEHSTIIYE------ 237 (364)
T ss_pred eEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEE--EecccccceEEec------
Confidence 9999999999999997541 2343 689999999999988 4457889 9888 443222 22111
Q ss_pred CCCCCC-ceeEEEEEEecCCeEEEEEE
Q 000733 239 DCDVNC-SVKVDSIRWVRRDCIIIGCF 264 (1324)
Q Consensus 239 D~d~d~-sV~V~SI~WLeNd~yLFg~v 264 (1324)
.+. .-...-+.|=.++-.+++.+
T Consensus 238 ---~p~~~~pLlRLswnkqDpnymATf 261 (364)
T KOG0290|consen 238 ---DPSPSTPLLRLSWNKQDPNYMATF 261 (364)
T ss_pred ---CCCCCCcceeeccCcCCchHHhhh
Confidence 111 23567788877765555544
No 269
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=86.62 E-value=7.3 Score=52.03 Aligned_cols=118 Identities=8% Similarity=0.001 Sum_probs=73.8
Q ss_pred CeeEEEEecCCCEEEEEeecCCeEEEEEccccc----CCCCc--cee-EEec-CCCcceEEEEecCCCCCeEEEEEeCCe
Q 000733 108 NVDILSLSNDESTLAVSLYQSPHIHFFSVHSLL----NKEIK--PSF-SCSL-NGSTYVKDIRWRKKPENSFLALSNVGR 179 (1324)
Q Consensus 108 ~VshLAFSsDEs~LAVcaesGg~L~VYDV~SLl----ng~t~--P~~-sisL-n~st~VrdLaWNP~~aslLAVVSsDGs 179 (1324)
.+..|+|++++..|.|+...+..|.+|+...-. .+... ... .... ..-.....++++|+...++++-..++.
T Consensus 684 ~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~ 763 (1057)
T PLN02919 684 SPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSS 763 (1057)
T ss_pred CCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCe
Confidence 467899999777787777666789999875321 01000 000 0000 000124568888876556666667789
Q ss_pred EEEEEeCCC-ceeee-------------------------cceeEEEeccCCCEEEEEecCc-eEEEccCccc
Q 000733 180 LYRGGVNGP-LEDVM-------------------------DNVDAVEWSVKGKFVAVAKKNV-LSILTSKLKE 225 (1324)
Q Consensus 180 L~Vldl~e~-lk~Va-------------------------sgVScVcWSPKGKQLVVGlaDG-IsQyTPDgee 225 (1324)
|+++|+..+ ...+. ....+++|+++|+.+|+-..|+ |..|.++...
T Consensus 764 Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~ 836 (1057)
T PLN02919 764 IRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKR 836 (1057)
T ss_pred EEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCe
Confidence 999998643 12111 1346899999999888888888 9999876443
No 270
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=86.05 E-value=0.57 Score=58.87 Aligned_cols=65 Identities=15% Similarity=0.226 Sum_probs=54.3
Q ss_pred CCCcceEEEEecCCCCCeEEEEEeCCeEEEEEeCCCcee------eecceeEEEeccCCCEEEEEecCc-eEEE
Q 000733 153 NGSTYVKDIRWRKKPENSFLALSNVGRLYRGGVNGPLED------VMDNVDAVEWSVKGKFVAVAKKNV-LSIL 219 (1324)
Q Consensus 153 n~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl~e~lk~------VasgVScVcWSPKGKQLVVGlaDG-IsQy 219 (1324)
.++..|..|.+++.- .++|.-+++|+|.+||+.+. +. +..+..+|.|+|-|++.|-|..|+ +.||
T Consensus 68 ~hespIeSl~f~~~E-~LlaagsasgtiK~wDleeA-k~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iw 139 (825)
T KOG0267|consen 68 GHESPIESLTFDTSE-RLLAAGSASGTIKVWDLEEA-KIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIW 139 (825)
T ss_pred ccCCcceeeecCcch-hhhcccccCCceeeeehhhh-hhhhhhhccccCcceeeeccceEEeccccccccceeh
Confidence 345789999998844 37888899999999999755 32 236888999999999999999999 9999
No 271
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=85.96 E-value=2.5 Score=51.04 Aligned_cols=112 Identities=13% Similarity=0.119 Sum_probs=67.6
Q ss_pred EEEEecCCCEEEEEee--cC-CeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEE-EeCCeE--EEEE
Q 000733 111 ILSLSNDESTLAVSLY--QS-PHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLAL-SNVGRL--YRGG 184 (1324)
Q Consensus 111 hLAFSsDEs~LAVcae--sG-g~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVV-SsDGsL--~Vld 184 (1324)
.-++++|+..|+-..- .+ +.+.++++..-.......+ + ..-.+-.|+|+.. .+|++ ..||.. |++|
T Consensus 197 ~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~-----~--g~~~~P~fspDG~-~l~f~~~rdg~~~iy~~d 268 (425)
T COG0823 197 TPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNF-----N--GNNGAPAFSPDGS-KLAFSSSRDGSPDIYLMD 268 (425)
T ss_pred ccccCcCCCceEEEEEecCCCceEEEEeccCCccceeecc-----C--CccCCccCCCCCC-EEEEEECCCCCccEEEEc
Confidence 3466777777654432 23 4577777665332211111 1 2334678999775 45544 557765 7778
Q ss_pred eCCCc-eee--e-cceeEEEeccCCCEEEEEecCc----eEEEccCcccccccc
Q 000733 185 VNGPL-EDV--M-DNVDAVEWSVKGKFVAVAKKNV----LSILTSKLKERLPIS 230 (1324)
Q Consensus 185 l~e~l-k~V--a-sgVScVcWSPKGKQLVVGlaDG----IsQyTPDgeeKkvIP 230 (1324)
+.... ..+ . ..-+.=.|||+|++||..+.-+ |.+|.+++.....+.
T Consensus 269 l~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT 322 (425)
T COG0823 269 LDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLT 322 (425)
T ss_pred CCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEee
Confidence 86542 222 1 2223678999999999987764 888888887665554
No 272
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.52 E-value=2.2 Score=52.55 Aligned_cols=104 Identities=15% Similarity=0.082 Sum_probs=68.7
Q ss_pred CeeEEEEecCCCEEEEEeecCCeEEEEEcccccCCCCcceeEE--ec-CC-CcceEEEEecCCCCCeEEEEEeCCeEEEE
Q 000733 108 NVDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSC--SL-NG-STYVKDIRWRKKPENSFLALSNVGRLYRG 183 (1324)
Q Consensus 108 ~VshLAFSsDEs~LAVcaesGg~L~VYDV~SLlng~t~P~~si--sL-n~-st~VrdLaWNP~~aslLAVVSsDGsL~Vl 183 (1324)
.|+.+.|=.|..+++.|. |+||+|| -|. .+++..+ .. ++ ++.|+.+ +|-+..-.+|.|+...++.++
T Consensus 786 ~i~~igfL~~lr~i~ScD---~giHlWD--PFi---gr~Laq~~dapk~~a~~~ikcl-~nv~~~iliAgcsaeSTVKl~ 856 (1034)
T KOG4190|consen 786 PIHDIGFLADLRSIASCD---GGIHLWD--PFI---GRLLAQMEDAPKEGAGGNIKCL-ENVDRHILIAGCSAESTVKLF 856 (1034)
T ss_pred cccceeeeeccceeeecc---Ccceeec--ccc---cchhHhhhcCcccCCCceeEec-ccCcchheeeeccchhhheee
Confidence 577889999999888887 6899998 232 1222111 11 11 1233333 333334477888999999988
Q ss_pred EeCCC-----ceeee-----cceeEEEeccCCCEEEEEecCc-eEEEc
Q 000733 184 GVNGP-----LEDVM-----DNVDAVEWSVKGKFVAVAKKNV-LSILT 220 (1324)
Q Consensus 184 dl~e~-----lk~Va-----sgVScVcWSPKGKQLVVGlaDG-IsQyT 220 (1324)
|.... .++.- .-+.|++--+||..+++|+.+| |.|+.
T Consensus 857 DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LD 904 (1034)
T KOG4190|consen 857 DARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILD 904 (1034)
T ss_pred ecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEe
Confidence 87532 23331 3467888889999999999999 99994
No 273
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=84.35 E-value=2.8 Score=50.03 Aligned_cols=100 Identities=15% Similarity=0.104 Sum_probs=73.8
Q ss_pred CeeEEEEecCCCEEEEEeecCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEEEEeCC
Q 000733 108 NVDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGGVNG 187 (1324)
Q Consensus 108 ~VshLAFSsDEs~LAVcaesGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl~e 187 (1324)
.|+|+..++-+.+|+|.. ..+.|.|||.+.-.+ ...|+.- -|-+.....+.+||.-+.++|+.+..|-.-|||+..
T Consensus 151 ~VY~m~~~P~DN~~~~~t-~~~~V~~~D~Rd~~~-~~~~~~~--AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~ 226 (609)
T KOG4227|consen 151 DVYHMDQHPTDNTLIVVT-RAKLVSFIDNRDRQN-PISLVLP--ANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRM 226 (609)
T ss_pred ceeecccCCCCceEEEEe-cCceEEEEeccCCCC-CCceeee--cCCCccceeeeecCCCceeEEeccccCCCCceeecc
Confidence 689999998778787765 457999999987432 3555542 243466788999999888899999999999999965
Q ss_pred Cceee---------ec---ceeEEEeccCCCEEEEE
Q 000733 188 PLEDV---------MD---NVDAVEWSVKGKFVAVA 211 (1324)
Q Consensus 188 ~lk~V---------as---gVScVcWSPKGKQLVVG 211 (1324)
....+ .+ .-..+-|+|.|.|+.+-
T Consensus 227 ~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msi 262 (609)
T KOG4227|consen 227 QARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSI 262 (609)
T ss_pred ccchHHhhhccccCcccchhhhheeeCCCCCeehhh
Confidence 43221 12 22678999999999743
No 274
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=84.15 E-value=2.2 Score=36.95 Aligned_cols=31 Identities=13% Similarity=0.100 Sum_probs=27.2
Q ss_pred cceEEEEecCCCCCeEEEEEeCCeEEEEEeCC
Q 000733 156 TYVKDIRWRKKPENSFLALSNVGRLYRGGVNG 187 (1324)
Q Consensus 156 t~VrdLaWNP~~aslLAVVSsDGsL~Vldl~e 187 (1324)
..|..+.|||... ++|+++++|.|.|+.++.
T Consensus 12 ~~v~~~~w~P~md-LiA~~t~~g~v~v~Rl~~ 42 (47)
T PF12894_consen 12 SRVSCMSWCPTMD-LIALGTEDGEVLVYRLNW 42 (47)
T ss_pred CcEEEEEECCCCC-EEEEEECCCeEEEEECCC
Confidence 4689999999765 999999999999999843
No 275
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=84.11 E-value=12 Score=45.66 Aligned_cols=110 Identities=16% Similarity=0.204 Sum_probs=59.5
Q ss_pred CCEEEEEeecCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEEEEeCCC---------
Q 000733 118 ESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGGVNGP--------- 188 (1324)
Q Consensus 118 Es~LAVcaesGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl~e~--------- 188 (1324)
|..|.+.. .+.|.|||+.+. +-++++.+. .|+.+.||++. +.+|+++ +.+++|++.+..
T Consensus 117 G~LL~~~~--~~~i~~yDw~~~-----~~i~~i~v~---~vk~V~Ws~~g-~~val~t-~~~i~il~~~~~~~~~~~~~g 184 (443)
T PF04053_consen 117 GNLLGVKS--SDFICFYDWETG-----KLIRRIDVS---AVKYVIWSDDG-ELVALVT-KDSIYILKYNLEAVAAIPEEG 184 (443)
T ss_dssp SSSEEEEE--TTEEEEE-TTT-------EEEEESS----E-EEEEE-TTS-SEEEEE--S-SEEEEEE-HHHHHHBTTTB
T ss_pred CcEEEEEC--CCCEEEEEhhHc-----ceeeEEecC---CCcEEEEECCC-CEEEEEe-CCeEEEEEecchhcccccccC
Confidence 88888887 668999998863 345555554 38999999964 4677776 557899877522
Q ss_pred ----ceee---ecceeEEEeccCCCEEEEEecCceEEEccCcccccccccCccccCCCCCCCCceeEEEEEEecCCeEEE
Q 000733 189 ----LEDV---MDNVDAVEWSVKGKFVAVAKKNVLSILTSKLKERLPISLSFKSWVGDCDVNCSVKVDSIRWVRRDCIII 261 (1324)
Q Consensus 189 ----lk~V---asgVScVcWSPKGKQLVVGlaDGIsQyTPDgeeKkvIP~Pf~S~I~D~d~d~sV~V~SI~WLeNd~yLF 261 (1324)
+..+ ...|.+.||--+ +.+|+-....+- +. ++ ++--|.-+++..|++
T Consensus 185 ~e~~f~~~~E~~~~IkSg~W~~d-----------~fiYtT~~~lkY-l~------------~G--e~~~i~~ld~~~yll 238 (443)
T PF04053_consen 185 VEDAFELIHEISERIKSGCWVED-----------CFIYTTSNHLKY-LV------------NG--ETGIIAHLDKPLYLL 238 (443)
T ss_dssp -GGGEEEEEEE-S--SEEEEETT-----------EEEEE-TTEEEE-EE------------TT--EEEEEEE-SS--EEE
T ss_pred chhceEEEEEecceeEEEEEEcC-----------EEEEEcCCeEEE-EE------------cC--CcceEEEcCCceEEE
Confidence 2333 468999999533 455543221111 01 11 244455577778888
Q ss_pred EEEe
Q 000733 262 GCFQ 265 (1324)
Q Consensus 262 g~vy 265 (1324)
+|..
T Consensus 239 gy~~ 242 (443)
T PF04053_consen 239 GYLP 242 (443)
T ss_dssp EEET
T ss_pred EEEc
Confidence 8864
No 276
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=84.06 E-value=2.6 Score=50.79 Aligned_cols=105 Identities=16% Similarity=0.202 Sum_probs=58.5
Q ss_pred eeEEEEecCCCEEEEEeecCCeEEE--EEcccccCCCCcceeEEecCCC-cceEEEEecCCCCCeEEEEEeCCeE--EEE
Q 000733 109 VDILSLSNDESTLAVSLYQSPHIHF--FSVHSLLNKEIKPSFSCSLNGS-TYVKDIRWRKKPENSFLALSNVGRL--YRG 183 (1324)
Q Consensus 109 VshLAFSsDEs~LAVcaesGg~L~V--YDV~SLlng~t~P~~sisLn~s-t~VrdLaWNP~~aslLAVVSsDGsL--~Vl 183 (1324)
-.+-+||+|+..|+.|...++...+ ||+.. ++ .+ ++..+ ..-..=-|+|+....+.+-...|.- ++.
T Consensus 240 ~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~---~~-~~----~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~ 311 (425)
T COG0823 240 NGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDG---KN-LP----RLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLY 311 (425)
T ss_pred cCCccCCCCCCEEEEEECCCCCccEEEEcCCC---Cc-ce----ecccCCccccCccCCCCCCEEEEEeCCCCCcceEEE
Confidence 4566899999999999987555444 54443 22 11 12111 1111234777665433343445554 555
Q ss_pred EeCCC-ceee---ecceeEEEeccCCCEEEEEecC-c---eEEEcc
Q 000733 184 GVNGP-LEDV---MDNVDAVEWSVKGKFVAVAKKN-V---LSILTS 221 (1324)
Q Consensus 184 dl~e~-lk~V---asgVScVcWSPKGKQLVVGlaD-G---IsQyTP 221 (1324)
+.... ...+ ..+=.+-.|||+||+||.-..+ | |..+.+
T Consensus 312 ~~~g~~~~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~ 357 (425)
T COG0823 312 DLEGSQVTRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDL 357 (425)
T ss_pred CCCCCceeEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEecc
Confidence 55433 2222 2333389999999999887754 3 455543
No 277
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=83.92 E-value=28 Score=39.53 Aligned_cols=106 Identities=17% Similarity=0.196 Sum_probs=66.4
Q ss_pred CCeeEEEEecCCCEEEEEeecCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEe-CCeEEEEEe
Q 000733 107 ENVDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSN-VGRLYRGGV 185 (1324)
Q Consensus 107 s~VshLAFSsDEs~LAVcaesGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSs-DGsL~Vldl 185 (1324)
..++-|++++|..+|++..-..+.|.-|+. +| +-+.+|.+.+-.-.-.+.+. .+..|+++.. ++.|+++++
T Consensus 22 ~e~SGLTy~pd~~tLfaV~d~~~~i~els~----~G--~vlr~i~l~g~~D~EgI~y~--g~~~~vl~~Er~~~L~~~~~ 93 (248)
T PF06977_consen 22 DELSGLTYNPDTGTLFAVQDEPGEIYELSL----DG--KVLRRIPLDGFGDYEGITYL--GNGRYVLSEERDQRLYIFTI 93 (248)
T ss_dssp S-EEEEEEETTTTEEEEEETTTTEEEEEET----T----EEEEEE-SS-SSEEEEEE---STTEEEEEETTTTEEEEEEE
T ss_pred CCccccEEcCCCCeEEEEECCCCEEEEEcC----CC--CEEEEEeCCCCCCceeEEEE--CCCEEEEEEcCCCcEEEEEE
Confidence 369999999998888766644566665653 23 34566777543445667773 3346777664 899999998
Q ss_pred CCC---c-----eeee--------cceeEEEeccCCCEEEEEecCc-eEEEc
Q 000733 186 NGP---L-----EDVM--------DNVDAVEWSVKGKFVAVAKKNV-LSILT 220 (1324)
Q Consensus 186 ~e~---l-----k~Va--------sgVScVcWSPKGKQLVVGlaDG-IsQyT 220 (1324)
... . +.+. .++-.+||.|+++.|.++.... ..+|.
T Consensus 94 ~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~ 145 (248)
T PF06977_consen 94 DDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYE 145 (248)
T ss_dssp ----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEE
T ss_pred eccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEE
Confidence 432 1 1111 3578899999999999998776 55563
No 278
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=83.68 E-value=14 Score=43.92 Aligned_cols=112 Identities=13% Similarity=0.090 Sum_probs=66.4
Q ss_pred EEec-CCCEEEEEeecCCeEEEEEcccccCCCCcceeE---------EecCCCcceEEEEecCCCCCeEEEEEe------
Q 000733 113 SLSN-DESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFS---------CSLNGSTYVKDIRWRKKPENSFLALSN------ 176 (1324)
Q Consensus 113 AFSs-DEs~LAVcaesGg~L~VYDV~SLlng~t~P~~s---------isLn~st~VrdLaWNP~~aslLAVVSs------ 176 (1324)
+|+. |+..|.|..+ |.|++.|+..--.....++.. |+.. .+.-++.+|+...+|++...
T Consensus 200 ~~~~~dg~~~~vs~e--G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~---g~q~ia~~~dg~~lyV~~~~~~~~th 274 (352)
T TIGR02658 200 AYSNKSGRLVWPTYT--GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPG---GWQQVAYHRARDRIYLLADQRAKWTH 274 (352)
T ss_pred ceEcCCCcEEEEecC--CeEEEEecCCCcceecceeeeccccccccccCCC---cceeEEEcCCCCEEEEEecCCccccc
Confidence 4555 8999988885 789998864322111222221 2222 12337777766655553322
Q ss_pred ---CCeEEEEEeCCCc--e--eeecceeEEEeccCCC-EEEEEe-cCc-eEEEcc-Cccccccc
Q 000733 177 ---VGRLYRGGVNGPL--E--DVMDNVDAVEWSVKGK-FVAVAK-KNV-LSILTS-KLKERLPI 229 (1324)
Q Consensus 177 ---DGsL~Vldl~e~l--k--~VasgVScVcWSPKGK-QLVVGl-aDG-IsQyTP-DgeeKkvI 229 (1324)
.+.+.|+|..... . .+...+-.++.||+|| .|.+.. .+| |.++.. .++..+.|
T Consensus 275 k~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 275 KTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred cCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 2478888886541 1 1246788999999999 666555 345 999854 24444444
No 279
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.55 E-value=9.1 Score=45.94 Aligned_cols=105 Identities=8% Similarity=0.114 Sum_probs=79.9
Q ss_pred eeEEEEecC--CCEEEEEeecCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEEEEeC
Q 000733 109 VDILSLSND--ESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGGVN 186 (1324)
Q Consensus 109 VshLAFSsD--Es~LAVcaesGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl~ 186 (1324)
++-+-|-.+ ...+|.|..- +.|++||++ .+.+|+..+.... ..|..+.--|.. +.+.+-..-|.|..+|+.
T Consensus 205 ~tdi~Fl~g~~~~~fat~T~~-hqvR~YDt~----~qRRPV~~fd~~E-~~is~~~l~p~g-n~Iy~gn~~g~l~~FD~r 277 (412)
T KOG3881|consen 205 ITDIRFLEGSPNYKFATITRY-HQVRLYDTR----HQRRPVAQFDFLE-NPISSTGLTPSG-NFIYTGNTKGQLAKFDLR 277 (412)
T ss_pred eccceecCCCCCceEEEEecc-eeEEEecCc----ccCcceeEecccc-CcceeeeecCCC-cEEEEecccchhheeccc
Confidence 456677666 7878887744 699999988 3589999988842 456677666644 467777889999999997
Q ss_pred CCc------eeeecceeEEEeccCCCEEEEEecCc-eEEEc
Q 000733 187 GPL------EDVMDNVDAVEWSVKGKFVAVAKKNV-LSILT 220 (1324)
Q Consensus 187 e~l------k~VasgVScVcWSPKGKQLVVGlaDG-IsQyT 220 (1324)
... +-+.+.++++-..|-++.|+.++=|- |.+|.
T Consensus 278 ~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD 318 (412)
T KOG3881|consen 278 GGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHD 318 (412)
T ss_pred CceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEee
Confidence 651 22357888999999999999998888 99993
No 280
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=83.24 E-value=8.3 Score=47.92 Aligned_cols=105 Identities=13% Similarity=0.078 Sum_probs=70.1
Q ss_pred cCCCEEEEEeecCCeEEEEEcccccCCCCcceeEEec-CCCcceEEEEecCCCCCeEEEEEeCCeEEEEEeCCCceee--
Q 000733 116 NDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSL-NGSTYVKDIRWRKKPENSFLALSNVGRLYRGGVNGPLEDV-- 192 (1324)
Q Consensus 116 sDEs~LAVcaesGg~L~VYDV~SLlng~t~P~~sisL-n~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl~e~lk~V-- 192 (1324)
+.+..++|..+.+|.|.+|++... ++.- .+.. .+...|..+.|+-... .|--|..|+.+-.|+.+......
T Consensus 67 s~~t~~lvlgt~~g~v~~ys~~~g---~it~--~~st~~h~~~v~~~~~~~~~~-ciyS~~ad~~v~~~~~~~~~~~~~~ 140 (541)
T KOG4547|consen 67 SLDTSMLVLGTPQGSVLLYSVAGG---EITA--KLSTDKHYGNVNEILDAQRLG-CIYSVGADLKVVYILEKEKVIIRIW 140 (541)
T ss_pred cCCceEEEeecCCccEEEEEecCC---eEEE--EEecCCCCCcceeeecccccC-ceEecCCceeEEEEecccceeeeee
Confidence 344445666667789999998753 2322 2222 3346899999977544 56777888888888887652221
Q ss_pred ---ecceeEEEeccCCCEEEEEecCceEEEccCccccccc
Q 000733 193 ---MDNVDAVEWSVKGKFVAVAKKNVLSILTSKLKERLPI 229 (1324)
Q Consensus 193 ---asgVScVcWSPKGKQLVVGlaDGIsQyTPDgeeKkvI 229 (1324)
...|.++|-|||||+|++|+.- |..| +.+.|+++
T Consensus 141 ~~~~~~~~sl~is~D~~~l~~as~~-ik~~--~~~~kevv 177 (541)
T KOG4547|consen 141 KEQKPLVSSLCISPDGKILLTASRQ-IKVL--DIETKEVV 177 (541)
T ss_pred ccCCCccceEEEcCCCCEEEeccce-EEEE--EccCceEE
Confidence 3689999999999999865322 7777 44555544
No 281
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=83.11 E-value=13 Score=46.31 Aligned_cols=111 Identities=14% Similarity=0.061 Sum_probs=71.4
Q ss_pred CeeEEEEecCCCEEEEEeecCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEEEEeCC
Q 000733 108 NVDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGGVNG 187 (1324)
Q Consensus 108 ~VshLAFSsDEs~LAVcaesGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl~e 187 (1324)
.|..|.+ ++.+|++... ++.|.||++.. .+.+.+++- +...|..|...+. +.+.-.+-|+++.+||+..
T Consensus 333 ~V~~v~~--~~~~lvsgs~-d~~v~VW~~~~-----~~cl~sl~g-H~~~V~sl~~~~~--~~~~Sgs~D~~IkvWdl~~ 401 (537)
T KOG0274|consen 333 PVNCVQL--DEPLLVSGSY-DGTVKVWDPRT-----GKCLKSLSG-HTGRVYSLIVDSE--NRLLSGSLDTTIKVWDLRT 401 (537)
T ss_pred cEEEEEe--cCCEEEEEec-CceEEEEEhhh-----ceeeeeecC-CcceEEEEEecCc--ceEEeeeeccceEeecCCc
Confidence 4555555 4665554443 56999999983 333444333 4468999988664 5677778899999999975
Q ss_pred C-c-ee----eecceeEEEeccCCCEEEEEecCc-eEEEcc-Cccccccccc
Q 000733 188 P-L-ED----VMDNVDAVEWSVKGKFVAVAKKNV-LSILTS-KLKERLPISL 231 (1324)
Q Consensus 188 ~-l-k~----VasgVScVcWSPKGKQLVVGlaDG-IsQyTP-DgeeKkvIP~ 231 (1324)
. . .. ...-|.++ -.+++.|+.+..|| |.+|.- +++..+++..
T Consensus 402 ~~~c~~tl~~h~~~v~~l--~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~ 451 (537)
T KOG0274|consen 402 KRKCIHTLQGHTSLVSSL--LLRDNFLVSSSADGTIKLWDAEEGECLRTLEG 451 (537)
T ss_pred hhhhhhhhcCCccccccc--ccccceeEeccccccEEEeecccCceeeeecc
Confidence 4 1 11 12344333 37899999999999 999942 2333444443
No 282
>PRK02888 nitrous-oxide reductase; Validated
Probab=82.67 E-value=25 Score=44.94 Aligned_cols=84 Identities=18% Similarity=0.170 Sum_probs=60.3
Q ss_pred eeecCCCCCeeEEEEecCCCEEEEEeecCCeEEEEEcccccC---CCCcc----eeEEecCCCcceEEEEecCCCCCeEE
Q 000733 100 VDVPFENENVDILSLSNDESTLAVSLYQSPHIHFFSVHSLLN---KEIKP----SFSCSLNGSTYVKDIRWRKKPENSFL 172 (1324)
Q Consensus 100 i~VPLp~s~VshLAFSsDEs~LAVcaesGg~L~VYDV~SLln---g~t~P----~~sisLn~st~VrdLaWNP~~aslLA 172 (1324)
..||++ ..++.|++|+||.+++|+..-.+.|.|+|++.+.. +...| ..++.++ ..-...+|.+.. +.+.
T Consensus 315 ~yIPVG-KsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevG--lGPLHTaFDg~G-~ayt 390 (635)
T PRK02888 315 RYVPVP-KNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELG--LGPLHTAFDGRG-NAYT 390 (635)
T ss_pred EEEECC-CCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccC--CCcceEEECCCC-CEEE
Confidence 345655 57999999999999999997778999999998653 22222 3333342 233456676653 4788
Q ss_pred EEEeCCeEEEEEeCC
Q 000733 173 ALSNVGRLYRGGVNG 187 (1324)
Q Consensus 173 VVSsDGsL~Vldl~e 187 (1324)
.|.-|..+-.||+..
T Consensus 391 slf~dsqv~kwn~~~ 405 (635)
T PRK02888 391 TLFLDSQIVKWNIEA 405 (635)
T ss_pred eEeecceeEEEehHH
Confidence 888899999999864
No 283
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=82.32 E-value=38 Score=38.50 Aligned_cols=99 Identities=15% Similarity=0.083 Sum_probs=62.9
Q ss_pred CCEEEEEeec--------C-CeEEEEEccccc--CCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEEEEeC
Q 000733 118 ESTLAVSLYQ--------S-PHIHFFSVHSLL--NKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGGVN 186 (1324)
Q Consensus 118 Es~LAVcaes--------G-g~L~VYDV~SLl--ng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl~ 186 (1324)
..+++|+..- . |.|.+|++..-- ....+..++..++ ..|.++..- .+. +++..++.|+++++.
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~--g~V~ai~~~---~~~-lv~~~g~~l~v~~l~ 115 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVK--GPVTAICSF---NGR-LVVAVGNKLYVYDLD 115 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEES--S-EEEEEEE---TTE-EEEEETTEEEEEEEE
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeec--CcceEhhhh---CCE-EEEeecCEEEEEEcc
Confidence 5777777731 2 889999998741 1134455555664 368888774 444 667778999999997
Q ss_pred CCceee-----ecceeEEEeccCCCEEEEEecCc-e--EEEccC
Q 000733 187 GPLEDV-----MDNVDAVEWSVKGKFVAVAKKNV-L--SILTSK 222 (1324)
Q Consensus 187 e~lk~V-----asgVScVcWSPKGKQLVVGlaDG-I--sQyTPD 222 (1324)
...+++ ...+.+++-+..|.+|++|.... + ..|..+
T Consensus 116 ~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~~ 159 (321)
T PF03178_consen 116 NSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMKSVSLLRYDEE 159 (321)
T ss_dssp TTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSSSEEEEEEETT
T ss_pred CcccchhhheecceEEEEEEeccccEEEEEEcccCEEEEEEEcc
Confidence 653222 13344555556788999999865 4 455553
No 284
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=82.26 E-value=5.3 Score=46.88 Aligned_cols=90 Identities=10% Similarity=0.167 Sum_probs=67.5
Q ss_pred CCCeeEEEEecCCCEEEEEeecCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEEEEe
Q 000733 106 NENVDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGGV 185 (1324)
Q Consensus 106 ~s~VshLAFSsDEs~LAVcaesGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl 185 (1324)
..-|+.+.|+-|..++. ...+-.|.|||++.. ..|+++|++. ..++-++-+-... .+|+=-.+..+++||+
T Consensus 357 tdtVTS~vF~~dd~vVS--gSDDrTvKvWdLrNM----RsplATIRtd--S~~NRvavs~g~~-iIAiPhDNRqvRlfDl 427 (481)
T KOG0300|consen 357 TDTVTSVVFNTDDRVVS--GSDDRTVKVWDLRNM----RSPLATIRTD--SPANRVAVSKGHP-IIAIPHDNRQVRLFDL 427 (481)
T ss_pred ccceeEEEEecCCceee--cCCCceEEEeeeccc----cCcceeeecC--CccceeEeecCCc-eEEeccCCceEEEEec
Confidence 34688899999999543 334789999999876 7799999996 3677787776554 6788889999999999
Q ss_pred CCC-ceee--------ecceeEEEeccC
Q 000733 186 NGP-LEDV--------MDNVDAVEWSVK 204 (1324)
Q Consensus 186 ~e~-lk~V--------asgVScVcWSPK 204 (1324)
++. +-.+ .--|+|.+|+-.
T Consensus 428 nG~RlaRlPrtsRqgHrRMV~c~AW~ee 455 (481)
T KOG0300|consen 428 NGNRLARLPRTSRQGHRRMVTCCAWLEE 455 (481)
T ss_pred CCCccccCCcccccccceeeeeeecccc
Confidence 754 2111 135899999844
No 285
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=82.06 E-value=9 Score=48.86 Aligned_cols=114 Identities=8% Similarity=0.106 Sum_probs=79.3
Q ss_pred CCeeEEEEecCCCEEEEEeecCCeEEEEEcccccC-CCCcceeE---E----ec-CCCcceEEEEecCCCCCeEEEEEeC
Q 000733 107 ENVDILSLSNDESTLAVSLYQSPHIHFFSVHSLLN-KEIKPSFS---C----SL-NGSTYVKDIRWRKKPENSFLALSNV 177 (1324)
Q Consensus 107 s~VshLAFSsDEs~LAVcaesGg~L~VYDV~SLln-g~t~P~~s---i----sL-n~st~VrdLaWNP~~aslLAVVSsD 177 (1324)
.+.++++.+-.+.++|+..+. |.|.|..+.+-.. ++..+++. . .+ +++..|+-+-||-+.. -+..-..+
T Consensus 15 vkL~c~~WNke~gyIAcgG~d-GlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~Q-KLTtSDt~ 92 (1189)
T KOG2041|consen 15 VKLHCAEWNKESGYIACGGAD-GLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQ-KLTTSDTS 92 (1189)
T ss_pred ceEEEEEEcccCCeEEecccc-ceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccc-cccccCCC
Confidence 467899999999987666544 6788876664432 23333222 2 22 4568899999998754 35556789
Q ss_pred CeEEEEEeCCCc---eee----ecceeEEEeccCCCEEEEEecCc-eEEEccC
Q 000733 178 GRLYRGGVNGPL---EDV----MDNVDAVEWSVKGKFVAVAKKNV-LSILTSK 222 (1324)
Q Consensus 178 GsL~Vldl~e~l---k~V----asgVScVcWSPKGKQLVVGlaDG-IsQyTPD 222 (1324)
|-+.||=+-.+. .++ .+-|.++||.-+|..|++...|| |..-+-|
T Consensus 93 GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvd 145 (1189)
T KOG2041|consen 93 GLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVD 145 (1189)
T ss_pred ceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeec
Confidence 999999875541 222 47899999999999999999988 5444433
No 286
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.97 E-value=11 Score=48.63 Aligned_cols=133 Identities=14% Similarity=0.175 Sum_probs=76.4
Q ss_pred ecCCCEEEEEeecCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCC----CCeEEEEEeCCeEEEEEeC---C
Q 000733 115 SNDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKP----ENSFLALSNVGRLYRGGVN---G 187 (1324)
Q Consensus 115 SsDEs~LAVcaesGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~----aslLAVVSsDGsL~Vldl~---e 187 (1324)
.-+|.++++|...| .|.+..+-+ . .-...+... .+++.++..|+. ...|++-..-| |.+..-+ .
T Consensus 80 ~~~Gey~asCS~DG-kv~I~sl~~---~--~~~~~~df~--rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgn 150 (846)
T KOG2066|consen 80 ILEGEYVASCSDDG-KVVIGSLFT---D--DEITQYDFK--RPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGN 150 (846)
T ss_pred ccCCceEEEecCCC-cEEEeeccC---C--ccceeEecC--CcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcC
Confidence 44678888887553 455543322 1 111112222 467788888872 23565555566 5443321 1
Q ss_pred Ccee----eecceeEEEeccCCCEEEEEecCceEEEcc-CcccccccccCccccCCCCCCCCceeEEEEEEecCCeEEEE
Q 000733 188 PLED----VMDNVDAVEWSVKGKFVAVAKKNVLSILTS-KLKERLPISLSFKSWVGDCDVNCSVKVDSIRWVRRDCIIIG 262 (1324)
Q Consensus 188 ~lk~----VasgVScVcWSPKGKQLVVGlaDGIsQyTP-DgeeKkvIP~Pf~S~I~D~d~d~sV~V~SI~WLeNd~yLFg 262 (1324)
...+ ..+.|-|++| .|..||++..+|+++|.- ....-..|+.|.++ . -+ ...--++.|.+.+..|+|
T Consensus 151 k~~v~l~~~eG~I~~i~W--~g~lIAWand~Gv~vyd~~~~~~l~~i~~p~~~----~-R~-e~fpphl~W~~~~~LVIG 222 (846)
T KOG2066|consen 151 KDSVVLSEGEGPIHSIKW--RGNLIAWANDDGVKVYDTPTRQRLTNIPPPSQS----V-RP-ELFPPHLHWQDEDRLVIG 222 (846)
T ss_pred ccceeeecCccceEEEEe--cCcEEEEecCCCcEEEeccccceeeccCCCCCC----C-Cc-ccCCCceEecCCCeEEEe
Confidence 1112 1378999999 699999999999999942 22333345555311 0 11 112346899999888888
Q ss_pred EE
Q 000733 263 CF 264 (1324)
Q Consensus 263 ~v 264 (1324)
-.
T Consensus 223 W~ 224 (846)
T KOG2066|consen 223 WG 224 (846)
T ss_pred cC
Confidence 75
No 287
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=81.13 E-value=7.8 Score=46.65 Aligned_cols=133 Identities=15% Similarity=0.156 Sum_probs=78.9
Q ss_pred cCCCEEEEEeec--CCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEEEEeCCCce---
Q 000733 116 NDESTLAVSLYQ--SPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGGVNGPLE--- 190 (1324)
Q Consensus 116 sDEs~LAVcaes--Gg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl~e~lk--- 190 (1324)
-+..+|||+.+. ||...|.-+.. .|...+-+-.--++-+.|.|+.|||-..+.+|-++.|-++.||++-++..
T Consensus 42 vNPkfiAvi~easgGgaf~ViPl~k--~Gr~d~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ 119 (472)
T KOG0303|consen 42 VNPKFVAVIIEASGGGAFLVIPLVK--TGRMDASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRD 119 (472)
T ss_pred cCCceEEEEEecCCCcceeeccccc--ccccCCCCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccC
Confidence 356777777765 33333333222 13222111111144578999999998888999999999999999965411
Q ss_pred ------ee---ecceeEEEeccCCCEE--EEEecCceEEEccCcccccccccCccccCCCCCCCCceeEEEEEEecCCeE
Q 000733 191 ------DV---MDNVDAVEWSVKGKFV--AVAKKNVLSILTSKLKERLPISLSFKSWVGDCDVNCSVKVDSIRWVRRDCI 259 (1324)
Q Consensus 191 ------~V---asgVScVcWSPKGKQL--VVGlaDGIsQyTPDgeeKkvIP~Pf~S~I~D~d~d~sV~V~SI~WLeNd~y 259 (1324)
.+ .-.|--|.|.|--.-+ .+|..|-|.+|.-. +....|..-+ +--|.++.|=.+..+
T Consensus 120 ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~-tgeali~l~h-----------pd~i~S~sfn~dGs~ 187 (472)
T KOG0303|consen 120 LTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVG-TGEALITLDH-----------PDMVYSMSFNRDGSL 187 (472)
T ss_pred cccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEecc-CCceeeecCC-----------CCeEEEEEeccCCce
Confidence 11 2578889999986543 34444448899432 1222232212 235777777666555
Q ss_pred EEE
Q 000733 260 IIG 262 (1324)
Q Consensus 260 LFg 262 (1324)
+.+
T Consensus 188 l~T 190 (472)
T KOG0303|consen 188 LCT 190 (472)
T ss_pred eee
Confidence 443
No 288
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=80.46 E-value=31 Score=41.61 Aligned_cols=109 Identities=17% Similarity=0.169 Sum_probs=64.3
Q ss_pred CeeEEEEecCCCEEEEEeecCCeEEE--EEcccccC-C-----------------------------------CCcceeE
Q 000733 108 NVDILSLSNDESTLAVSLYQSPHIHF--FSVHSLLN-K-----------------------------------EIKPSFS 149 (1324)
Q Consensus 108 ~VshLAFSsDEs~LAVcaesGg~L~V--YDV~SLln-g-----------------------------------~t~P~~s 149 (1324)
.|++|.|+.+-.-|+|+.+.| .|-+ |....... + .-.|+.-
T Consensus 3 ~v~~vs~a~~t~Elav~~~~G-eVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESG-EVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS--EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCC-cEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence 489999999999999999875 4444 44332221 0 0112222
Q ss_pred EecCCCcceEEEEecCCCCCeEEEEEeCCeEEEEEeCCCceee-------------ecceeEEEec---cCCC-----EE
Q 000733 150 CSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGGVNGPLEDV-------------MDNVDAVEWS---VKGK-----FV 208 (1324)
Q Consensus 150 isLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl~e~lk~V-------------asgVScVcWS---PKGK-----QL 208 (1324)
+..+ ...|.+|+-+ +. ..+||...+|.|.|.|+.+..-++ ...|+|++|+ .+|+ .|
T Consensus 82 ~~~~-~g~vtal~~S-~i-GFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L 158 (395)
T PF08596_consen 82 LDAK-QGPVTALKNS-DI-GFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICL 158 (395)
T ss_dssp E----S-SEEEEEE--BT-SEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEE
T ss_pred eecc-CCcEeEEecC-CC-cEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEE
Confidence 2222 2456666653 23 378888999999999996552211 1368899999 3333 68
Q ss_pred EEEecCc-eEEEc
Q 000733 209 AVAKKNV-LSILT 220 (1324)
Q Consensus 209 VVGlaDG-IsQyT 220 (1324)
.+|+..| +..|+
T Consensus 159 ~vGTn~G~v~~fk 171 (395)
T PF08596_consen 159 LVGTNSGNVLTFK 171 (395)
T ss_dssp EEEETTSEEEEEE
T ss_pred EEEeCCCCEEEEE
Confidence 9999999 88883
No 289
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=80.37 E-value=2.8 Score=51.79 Aligned_cols=110 Identities=16% Similarity=0.184 Sum_probs=76.5
Q ss_pred CeeEEEEe---cCCCEEEEEeecCCeEEEEEcccccCC-----CCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCe
Q 000733 108 NVDILSLS---NDESTLAVSLYQSPHIHFFSVHSLLNK-----EIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGR 179 (1324)
Q Consensus 108 ~VshLAFS---sDEs~LAVcaesGg~L~VYDV~SLlng-----~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGs 179 (1324)
+|..+-|= .|+.+ +.++ .+..|++||+.++..+ -..+.+.|.-. -..|+-|+..|+.++.|-.++.||+
T Consensus 95 NIFsvKFvP~tnnriv-~sgA-gDk~i~lfdl~~~~~~~~d~~~~~~~~~~~ch-t~rVKria~~p~~PhtfwsasEDGt 171 (758)
T KOG1310|consen 95 NIFSVKFVPYTNNRIV-LSGA-GDKLIKLFDLDSSKEGGMDHGMEETTRCWSCH-TDRVKRIATAPNGPHTFWSASEDGT 171 (758)
T ss_pred ceeEEeeeccCCCeEE-Eecc-CcceEEEEecccccccccccCccchhhhhhhh-hhhhhheecCCCCCceEEEecCCcc
Confidence 56666663 34443 3333 3679999999988765 23333333322 2479999999999999999999999
Q ss_pred EEEEEeCCCc-----eee----------ecceeEEEeccCC-CEEEEEecCc-eEEEc
Q 000733 180 LYRGGVNGPL-----EDV----------MDNVDAVEWSVKG-KFVAVAKKNV-LSILT 220 (1324)
Q Consensus 180 L~Vldl~e~l-----k~V----------asgVScVcWSPKG-KQLVVGlaDG-IsQyT 220 (1324)
++.+|+.+.- ..+ .-...|+.-||.- -+|++|..|- ...|.
T Consensus 172 irQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD 229 (758)
T KOG1310|consen 172 IRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYD 229 (758)
T ss_pred eeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhh
Confidence 9999997631 101 1467799999875 4678888777 77774
No 290
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.79 E-value=57 Score=42.88 Aligned_cols=156 Identities=19% Similarity=0.212 Sum_probs=96.5
Q ss_pred cCCCCCCCCCCCCCcceEeeCCcceEEEEEcCCceEEEEehHH-HHHHhhcccCCcccccccceeeeecCCCCCeeEEEE
Q 000733 36 RDDDSQFDLQNPPSLPLAVSQLSHQLIFAAHSSGFCVARTNDV-IDAAKEMKENGTRCCVQELSVVDVPFENENVDILSL 114 (1324)
Q Consensus 36 RLfss~~dLP~~~sSLLAVSN~K~GLvfAAgpdGLvVarTsDL-r~a~ksa~en~tv~~~~dl~vi~VPLp~s~VshLAF 114 (1324)
|++.-..+....+++-|||++ .--.+++|=.+|.+++---|+ |+ .+.+- . ...+.. +.|+-|+|
T Consensus 115 ri~~~~np~~~~p~s~l~Vs~-~l~~Iv~Gf~nG~V~~~~GDi~RD-------rgsr~-----~-~~~~~~-~pITgL~~ 179 (933)
T KOG2114|consen 115 RIFTIKNPTNPSPASSLAVSE-DLKTIVCGFTNGLVICYKGDILRD-------RGSRQ-----D-YSHRGK-EPITGLAL 179 (933)
T ss_pred eeeccCCCCCCCcceEEEEEc-cccEEEEEecCcEEEEEcCcchhc-------cccce-----e-eeccCC-CCceeeEE
Confidence 545433333355889999999 888889998899877633333 32 12210 0 223332 57999999
Q ss_pred ecCCCE-EEEEeecCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEEEEeCCCceeee
Q 000733 115 SNDEST-LAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGGVNGPLEDVM 193 (1324)
Q Consensus 115 SsDEs~-LAVcaesGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl~e~lk~Va 193 (1324)
..|+.. |.|+. -..|++|.+. |+. |....-=++|..+++-..++... -|+++ ..-.|+.++..+.
T Consensus 180 ~~d~~s~lFv~T--t~~V~~y~l~----gr~-p~~~~ld~~G~~lnCss~~~~t~-qfIca-~~e~l~fY~sd~~----- 245 (933)
T KOG2114|consen 180 RSDGKSVLFVAT--TEQVMLYSLS----GRT-PSLKVLDNNGISLNCSSFSDGTY-QFICA-GSEFLYFYDSDGR----- 245 (933)
T ss_pred ecCCceeEEEEe--cceeEEEEec----CCC-cceeeeccCCccceeeecCCCCc-cEEEe-cCceEEEEcCCCc-----
Confidence 999998 55555 3489999877 444 65431114468888888888655 24444 4555888888643
Q ss_pred cceeEEEeccCCCEEEEEecCc-eEEEccC
Q 000733 194 DNVDAVEWSVKGKFVAVAKKNV-LSILTSK 222 (1324)
Q Consensus 194 sgVScVcWSPKGKQLVVGlaDG-IsQyTPD 222 (1324)
=-|+++-..+|....-..-| +-.++++
T Consensus 246 --~~cfaf~~g~kk~~~~~~~g~~L~v~~~ 273 (933)
T KOG2114|consen 246 --GPCFAFEVGEKKEMLVFSFGLLLCVTTD 273 (933)
T ss_pred --ceeeeecCCCeEEEEEEecCEEEEEEcc
Confidence 22555555566555444446 5555543
No 291
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.22 E-value=20 Score=43.27 Aligned_cols=94 Identities=13% Similarity=0.221 Sum_probs=71.7
Q ss_pred ceEEEEecCCC-CCeEEEEEeCCeEEEEEeCCCceee------ecceeEEEeccCCCEEEEEecCc-eEEEccCcccccc
Q 000733 157 YVKDIRWRKKP-ENSFLALSNVGRLYRGGVNGPLEDV------MDNVDAVEWSVKGKFVAVAKKNV-LSILTSKLKERLP 228 (1324)
Q Consensus 157 ~VrdLaWNP~~-aslLAVVSsDGsL~Vldl~e~lk~V------asgVScVcWSPKGKQLVVGlaDG-IsQyTPDgeeKkv 228 (1324)
-+.++.|-|.. ...||.|+.-+.|++||...+=+.+ ...++|+.--|+|++|.+|..-| +..| |+..++.
T Consensus 204 W~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~F--D~r~~kl 281 (412)
T KOG3881|consen 204 WITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKF--DLRGGKL 281 (412)
T ss_pred eeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhhee--cccCcee
Confidence 45566776663 4489999999999999997442222 37899999999999999999999 9999 7888888
Q ss_pred cccCccccCCCCCCCCceeEEEEEEecCCeEE
Q 000733 229 ISLSFKSWVGDCDVNCSVKVDSIRWVRRDCII 260 (1324)
Q Consensus 229 IP~Pf~S~I~D~d~d~sV~V~SI~WLeNd~yL 260 (1324)
+-|-++ +..-.+.+|....++-|+
T Consensus 282 ~g~~~k--------g~tGsirsih~hp~~~~l 305 (412)
T KOG3881|consen 282 LGCGLK--------GITGSIRSIHCHPTHPVL 305 (412)
T ss_pred eccccC--------CccCCcceEEEcCCCceE
Confidence 877541 223358888888886443
No 292
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=78.18 E-value=65 Score=33.08 Aligned_cols=97 Identities=15% Similarity=0.069 Sum_probs=64.1
Q ss_pred eeEEEEe---cCC-CEEEEEeecCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEEEE
Q 000733 109 VDILSLS---NDE-STLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGG 184 (1324)
Q Consensus 109 VshLAFS---sDE-s~LAVcaesGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vld 184 (1324)
|+.|+|. -|| .-|+|+. .+..|++|+=..++ ++++.. ..|..|..... ..||-.+.+|++-|++
T Consensus 2 V~al~~~d~d~dg~~eLlvGs-~D~~IRvf~~~e~~-------~Ei~e~--~~v~~L~~~~~--~~F~Y~l~NGTVGvY~ 69 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGS-DDFEIRVFKGDEIV-------AEITET--DKVTSLCSLGG--GRFAYALANGTVGVYD 69 (111)
T ss_pred eeEEEEEecCCCCcceEEEec-CCcEEEEEeCCcEE-------EEEecc--cceEEEEEcCC--CEEEEEecCCEEEEEe
Confidence 5555554 332 3455544 35789999755543 345443 36777877665 5799999999999887
Q ss_pred eCCCceee--ecceeEEEeccCCC----EEEEEecCc-eE
Q 000733 185 VNGPLEDV--MDNVDAVEWSVKGK----FVAVAKKNV-LS 217 (1324)
Q Consensus 185 l~e~lk~V--asgVScVcWSPKGK----QLVVGlaDG-Is 217 (1324)
-...+=.+ ...++|+++.--.. .|++|-.|| |.
T Consensus 70 ~~~RlWRiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 70 RSQRLWRIKSKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred CcceeeeeccCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 65442122 35688888876554 899999999 63
No 293
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=77.65 E-value=17 Score=43.63 Aligned_cols=98 Identities=11% Similarity=0.099 Sum_probs=52.2
Q ss_pred EEEecCCCEEEEEeecCCeEEEEEcccccC-CCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEEEEeCCCce
Q 000733 112 LSLSNDESTLAVSLYQSPHIHFFSVHSLLN-KEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGGVNGPLE 190 (1324)
Q Consensus 112 LAFSsDEs~LAVcaesGg~L~VYDV~SLln-g~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl~e~lk 190 (1324)
.-++.|+.+.+... .|+.|++.+...+.. ....|+..+.+.++. ..+|+++.+|.|+|++..-...
T Consensus 184 ~~l~~~~~~~i~~~-~g~~i~~i~~~~~~~i~~~~~i~~iavSpng------------~~iAl~t~~g~l~v~ssDf~~~ 250 (410)
T PF04841_consen 184 PLLSSDRVVEILLA-NGETIYIIDENSFKQIDSDGPIIKIAVSPNG------------KFIALFTDSGNLWVVSSDFSEK 250 (410)
T ss_pred eEeecCcceEEEEe-cCCEEEEEEccccccccCCCCeEEEEECCCC------------CEEEEEECCCCEEEEECcccce
Confidence 34455555443332 367777666555411 124578888776432 2578888889988886532211
Q ss_pred ee------ecceeEEEeccCCCEEEEEecCceEEEccCc
Q 000733 191 DV------MDNVDAVEWSVKGKFVAVAKKNVLSILTSKL 223 (1324)
Q Consensus 191 ~V------asgVScVcWSPKGKQLVVGlaDGIsQyTPDg 223 (1324)
.. ......++|+-.. -+|+...+.|..+.|++
T Consensus 251 ~~e~~~~~~~~p~~~~WCG~d-av~l~~~~~l~lvg~~~ 288 (410)
T PF04841_consen 251 LCEFDTDSKSPPKQMAWCGND-AVVLSWEDELLLVGPDG 288 (410)
T ss_pred eEEeecCcCCCCcEEEEECCC-cEEEEeCCEEEEECCCC
Confidence 11 1345566666553 33334433455555544
No 294
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=77.59 E-value=9.5 Score=45.39 Aligned_cols=99 Identities=16% Similarity=0.263 Sum_probs=69.3
Q ss_pred EEEEecCCCEEEEEeecCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEEEEeCCCce
Q 000733 111 ILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGGVNGPLE 190 (1324)
Q Consensus 111 hLAFSsDEs~LAVcaesGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl~e~lk 190 (1324)
.|.+--|+. ++|...++..|.|||+.+ .+|+-++ +.+-..|.-|.+| +.+.+.|+.|.++.|||......
T Consensus 240 VLCLqyd~r-viisGSSDsTvrvWDv~t-----ge~l~tl-ihHceaVLhlrf~---ng~mvtcSkDrsiaVWdm~sps~ 309 (499)
T KOG0281|consen 240 VLCLQYDER-VIVSGSSDSTVRVWDVNT-----GEPLNTL-IHHCEAVLHLRFS---NGYMVTCSKDRSIAVWDMASPTD 309 (499)
T ss_pred EEeeeccce-EEEecCCCceEEEEeccC-----CchhhHH-hhhcceeEEEEEe---CCEEEEecCCceeEEEeccCchH
Confidence 344444777 555566778999999985 2333221 1223567788884 46788999999999999976521
Q ss_pred -----e---eecceeEEEeccCCCEEEEEecCc-eEEEcc
Q 000733 191 -----D---VMDNVDAVEWSVKGKFVAVAKKNV-LSILTS 221 (1324)
Q Consensus 191 -----~---VasgVScVcWSPKGKQLVVGlaDG-IsQyTP 221 (1324)
+ +...|-.|.++-| +||.++.|- |..|.-
T Consensus 310 it~rrVLvGHrAaVNvVdfd~k--yIVsASgDRTikvW~~ 347 (499)
T KOG0281|consen 310 ITLRRVLVGHRAAVNVVDFDDK--YIVSASGDRTIKVWST 347 (499)
T ss_pred HHHHHHHhhhhhheeeeccccc--eEEEecCCceEEEEec
Confidence 1 1267888887665 999999998 999964
No 295
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=77.58 E-value=7 Score=27.05 Aligned_cols=28 Identities=11% Similarity=0.075 Sum_probs=24.1
Q ss_pred cceEEEEecCCCCCeEEEEEeCCeEEEEE
Q 000733 156 TYVKDIRWRKKPENSFLALSNVGRLYRGG 184 (1324)
Q Consensus 156 t~VrdLaWNP~~aslLAVVSsDGsL~Vld 184 (1324)
..|.++.|+|.. ..++.+..||.+++|+
T Consensus 13 ~~i~~~~~~~~~-~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 13 GPVTSVAFSPDG-KYLASASDDGTIKLWD 40 (40)
T ss_pred CceeEEEECCCC-CEEEEecCCCeEEEcC
Confidence 579999999966 5888899999999885
No 296
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=77.23 E-value=70 Score=36.46 Aligned_cols=102 Identities=16% Similarity=0.121 Sum_probs=69.3
Q ss_pred CeeEEEEecCCCEEEEEeecCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEEEEeCC
Q 000733 108 NVDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGGVNG 187 (1324)
Q Consensus 108 ~VshLAFSsDEs~LAVcaesGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl~e 187 (1324)
.|+.|+-- ++ .|+++. |..|.+|++..-. ...+.+.+... ..+.++.+. .+.+++.+.-..+.++.+..
T Consensus 90 ~V~ai~~~-~~-~lv~~~--g~~l~v~~l~~~~--~l~~~~~~~~~--~~i~sl~~~---~~~I~vgD~~~sv~~~~~~~ 158 (321)
T PF03178_consen 90 PVTAICSF-NG-RLVVAV--GNKLYVYDLDNSK--TLLKKAFYDSP--FYITSLSVF---KNYILVGDAMKSVSLLRYDE 158 (321)
T ss_dssp -EEEEEEE-TT-EEEEEE--TTEEEEEEEETTS--SEEEEEEE-BS--SSEEEEEEE---TTEEEEEESSSSEEEEEEET
T ss_pred cceEhhhh-CC-EEEEee--cCEEEEEEccCcc--cchhhheecce--EEEEEEecc---ccEEEEEEcccCEEEEEEEc
Confidence 37777544 44 488889 8999999877522 24555554443 478888874 45777777788898887653
Q ss_pred C---ceeee-----cceeEEEeccCCCEEEEEecCc-eEEEc
Q 000733 188 P---LEDVM-----DNVDAVEWSVKGKFVAVAKKNV-LSILT 220 (1324)
Q Consensus 188 ~---lk~Va-----sgVScVcWSPKGKQLVVGlaDG-IsQyT 220 (1324)
. +..++ -.++|++.=++++.++++..+| |..+.
T Consensus 159 ~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~ 200 (321)
T PF03178_consen 159 ENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLR 200 (321)
T ss_dssp TTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEE
T ss_pred cCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEE
Confidence 2 33332 4688888887889999999999 76664
No 297
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=75.76 E-value=26 Score=43.59 Aligned_cols=68 Identities=15% Similarity=0.236 Sum_probs=46.7
Q ss_pred cceEEEEecCCCCCeEEEEE--eCCeEEEEEeCCCceeee--cceeEEEeccCCCEEEE-EecC--c-eEEEccCcc
Q 000733 156 TYVKDIRWRKKPENSFLALS--NVGRLYRGGVNGPLEDVM--DNVDAVEWSVKGKFVAV-AKKN--V-LSILTSKLK 224 (1324)
Q Consensus 156 t~VrdLaWNP~~aslLAVVS--sDGsL~Vldl~e~lk~Va--sgVScVcWSPKGKQLVV-GlaD--G-IsQyTPDge 224 (1324)
..|.++.|+|... -|+||. .+-.+.++|+...+..+. +.=-..-+||-+.+|++ |..| | +.+|.|-+.
T Consensus 275 ~pVhdf~W~p~S~-~F~vi~g~~pa~~s~~~lr~Nl~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~r 350 (561)
T COG5354 275 DPVHDFTWEPLSS-RFAVISGYMPASVSVFDLRGNLRFYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGR 350 (561)
T ss_pred ccceeeeecccCC-ceeEEecccccceeecccccceEEecCCcccccccccCcccEEEEecCCccccceEEeccCCc
Confidence 5799999999766 599887 678888888877655443 12224556777777654 4444 5 778876543
No 298
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=74.61 E-value=93 Score=36.83 Aligned_cols=152 Identities=7% Similarity=-0.009 Sum_probs=82.5
Q ss_pred cCCCCCeeEEEEec-CCCEEEEEeecCCeEEEEEcccccCC------CCcceeEEecCCCcceEEEEecCCCCCeEEE--
Q 000733 103 PFENENVDILSLSN-DESTLAVSLYQSPHIHFFSVHSLLNK------EIKPSFSCSLNGSTYVKDIRWRKKPENSFLA-- 173 (1324)
Q Consensus 103 PLp~s~VshLAFSs-DEs~LAVcaesGg~L~VYDV~SLlng------~t~P~~sisLn~st~VrdLaWNP~~aslLAV-- 173 (1324)
||| .+.+-++.++ +...++++...|-.+.+||.++-... .-..|+ ++ -.|+|+-.-+|+.
T Consensus 2 ~lP-~RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFy----GH------g~fs~dG~~LytTEn 70 (305)
T PF07433_consen 2 PLP-ARGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFY----GH------GVFSPDGRLLYTTEN 70 (305)
T ss_pred CCC-ccccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEe----cC------EEEcCCCCEEEEecc
Confidence 444 4689999999 66666666667999999998753211 112222 11 2355544323322
Q ss_pred --EEeCCeEEEEEeCCCceeee----c--ceeEEEeccCCCEEEEEecCc-eEEEccC-ccccccccc--CccccC----
Q 000733 174 --LSNVGRLYRGGVNGPLEDVM----D--NVDAVEWSVKGKFVAVAKKNV-LSILTSK-LKERLPISL--SFKSWV---- 237 (1324)
Q Consensus 174 --VSsDGsL~Vldl~e~lk~Va----s--gVScVcWSPKGKQLVVGlaDG-IsQyTPD-geeKkvIP~--Pf~S~I---- 237 (1324)
-+..|-|-|||.......+. . +.=-+-|.|+|+.||++ || |.-- || +..|..+.. |.-.-+
T Consensus 71 d~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVA--NGGI~Th-pd~GR~kLNl~tM~psL~~ld~~s 147 (305)
T PF07433_consen 71 DYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVA--NGGIETH-PDSGRAKLNLDTMQPSLVYLDARS 147 (305)
T ss_pred ccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEE--cCCCccC-cccCceecChhhcCCceEEEecCC
Confidence 23467778888875555543 2 22347799999999987 44 4222 21 222222211 100000
Q ss_pred CC-------CCCCCceeEEEEEEecCCeEEEEEEeecC
Q 000733 238 GD-------CDVNCSVKVDSIRWVRRDCIIIGCFQLTE 268 (1324)
Q Consensus 238 ~D-------~d~d~sV~V~SI~WLeNd~yLFg~vysae 268 (1324)
|+ ...+....+-++.|-.+...+|+.-|..+
T Consensus 148 G~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~ 185 (305)
T PF07433_consen 148 GALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGD 185 (305)
T ss_pred CceeeeeecCccccccceeeEEecCCCcEEEEEecCCC
Confidence 00 00223346778888877766677776533
No 299
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=73.90 E-value=13 Score=46.89 Aligned_cols=87 Identities=10% Similarity=0.141 Sum_probs=60.2
Q ss_pred CeeEEEEecCCCEEEEEeecCCeEEEEEcccccCCCCcceeEEecCCCcce-EEEEecCCCCCeEEEEEeCCeEEEEEeC
Q 000733 108 NVDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYV-KDIRWRKKPENSFLALSNVGRLYRGGVN 186 (1324)
Q Consensus 108 ~VshLAFSsDEs~LAVcaesGg~L~VYDV~SLlng~t~P~~sisLn~st~V-rdLaWNP~~aslLAVVSsDGsL~Vldl~ 186 (1324)
++..+-.++-=-.+|...+. |.|.++.+. -+-+.++++. +..+ +.+.|+|+ ..++||-..||++.+.|+.
T Consensus 22 ~i~~~ewnP~~dLiA~~t~~-gelli~R~n------~qRlwtip~p-~~~v~~sL~W~~D-GkllaVg~kdG~I~L~Dve 92 (665)
T KOG4640|consen 22 NIKRIEWNPKMDLIATRTEK-GELLIHRLN------WQRLWTIPIP-GENVTASLCWRPD-GKLLAVGFKDGTIRLHDVE 92 (665)
T ss_pred ceEEEEEcCccchhheeccC-CcEEEEEec------cceeEeccCC-CCccceeeeecCC-CCEEEEEecCCeEEEEEcc
Confidence 47888888866655554444 578887755 2234444542 3344 49999998 6699999999999999997
Q ss_pred CCcee------eecceeEEEecc
Q 000733 187 GPLED------VMDNVDAVEWSV 203 (1324)
Q Consensus 187 e~lk~------VasgVScVcWSP 203 (1324)
.+..+ +...|+|+-|++
T Consensus 93 ~~~~l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 93 KGGRLVSFLFSVETDISKGIWDR 115 (665)
T ss_pred CCCceeccccccccchheeeccc
Confidence 55322 246888888883
No 300
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=73.37 E-value=66 Score=41.87 Aligned_cols=168 Identities=15% Similarity=0.170 Sum_probs=96.1
Q ss_pred CCcceEeeCCcceEEEEEcCCceEEEEehHHHHHHhhc-c-cCCcc---cccccceeeeecCCCCCeeEEEEe--cCCCE
Q 000733 48 PSLPLAVSQLSHQLIFAAHSSGFCVARTNDVIDAAKEM-K-ENGTR---CCVQELSVVDVPFENENVDILSLS--NDEST 120 (1324)
Q Consensus 48 ~sSLLAVSN~K~GLvfAAgpdGLvVarTsDLr~a~ksa-~-en~tv---~~~~dl~vi~VPLp~s~VshLAFS--sDEs~ 120 (1324)
.-||.|+++ +-++|+|....+.|...+.+....... . .-.+. ....+......|.| ..|.++-+. .++.+
T Consensus 40 KNNLtalsq--~n~LFiA~~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~P-HtIN~i~v~~lg~~EV 116 (717)
T PF08728_consen 40 KNNLTALSQ--RNLLFIAYQSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFP-HTINFIKVGDLGGEEV 116 (717)
T ss_pred ccceeEEec--CCEEEEEECCEEEEEecCCcccccccccccccccCccccccccccccCCCCC-ceeeEEEecccCCeeE
Confidence 466777776 667777778889999887776532110 0 00000 00111111122333 357777554 47777
Q ss_pred EEEEeecCCeEEEEEcccccCC---------------CCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEEEEe
Q 000733 121 LAVSLYQSPHIHFFSVHSLLNK---------------EIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGGV 185 (1324)
Q Consensus 121 LAVcaesGg~L~VYDV~SLlng---------------~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl 185 (1324)
|++|.. +|.|.+|.++++... .+.|++...++.++=-.|+. +=....++||-+|...+.|+-+
T Consensus 117 Ll~c~D-dG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh-~~~~~rlIAVSsNs~~VTVFaf 194 (717)
T PF08728_consen 117 LLLCTD-DGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIH-DYKKSRLIAVSSNSQEVTVFAF 194 (717)
T ss_pred EEEEec-CCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEE-ecCcceEEEEecCCceEEEEEE
Confidence 777774 478999999877721 24577777765432222222 0012346667677777777655
Q ss_pred CC---Cce-----eeecceeEEEeccCC-----C-EEEEEecCc-eEEEc
Q 000733 186 NG---PLE-----DVMDNVDAVEWSVKG-----K-FVAVAKKNV-LSILT 220 (1324)
Q Consensus 186 ~e---~lk-----~VasgVScVcWSPKG-----K-QLVVGlaDG-IsQyT 220 (1324)
.. ..- ....+|-|||+=+.. . .|+++.-.| +..+.
T Consensus 195 ~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~ 244 (717)
T PF08728_consen 195 ALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFK 244 (717)
T ss_pred eccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEE
Confidence 32 111 134789999986553 2 778888888 77763
No 301
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=72.77 E-value=38 Score=40.26 Aligned_cols=137 Identities=9% Similarity=0.132 Sum_probs=87.9
Q ss_pred CCCeeEEEEecCCCEEEEEeecCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEEEEe
Q 000733 106 NENVDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGGV 185 (1324)
Q Consensus 106 ~s~VshLAFSsDEs~LAVcaesGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl 185 (1324)
++.++|..-.+... |+|....+...++||.+.-+. .-.+|. ++-..|....||-+.. ++--+.|.++.|||+
T Consensus 314 d~ELtHcstHptQr-LVvTsSrDtTFRLWDFReaI~--sV~VFQ---GHtdtVTS~vF~~dd~--vVSgSDDrTvKvWdL 385 (481)
T KOG0300|consen 314 DSELTHCSTHPTQR-LVVTSSRDTTFRLWDFREAIQ--SVAVFQ---GHTDTVTSVVFNTDDR--VVSGSDDRTVKVWDL 385 (481)
T ss_pred chhccccccCCcce-EEEEeccCceeEeccchhhcc--eeeeec---ccccceeEEEEecCCc--eeecCCCceEEEeee
Confidence 44566666555554 777776778899999885433 111111 2335788888987553 566688999999999
Q ss_pred CCC---ceee--ecceeEEEeccCCCEEEEEecCc-eEEEccCcccccccccCccccCCCCCCCCceeEEEEEEecCC
Q 000733 186 NGP---LEDV--MDNVDAVEWSVKGKFVAVAKKNV-LSILTSKLKERLPISLSFKSWVGDCDVNCSVKVDSIRWVRRD 257 (1324)
Q Consensus 186 ~e~---lk~V--asgVScVcWSPKGKQLVVGlaDG-IsQyTPDgeeKkvIP~Pf~S~I~D~d~d~sV~V~SI~WLeNd 257 (1324)
.+- +-.| .+.+--++-|.-++-||+-..|- |.+|.-+|.-...+|+-.+ ....--|....|++.+
T Consensus 386 rNMRsplATIRtdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsR-------qgHrRMV~c~AW~eeh 456 (481)
T KOG0300|consen 386 RNMRSPLATIRTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSR-------QGHRRMVTCCAWLEEH 456 (481)
T ss_pred ccccCcceeeecCCccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccc-------cccceeeeeeeccccC
Confidence 742 2222 24565666668888888888888 9999555554444554321 1223358888998775
No 302
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=72.64 E-value=12 Score=46.04 Aligned_cols=104 Identities=10% Similarity=0.079 Sum_probs=74.4
Q ss_pred CeeEEEEecCCCEEEEEeecCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEEEEeCC
Q 000733 108 NVDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGGVNG 187 (1324)
Q Consensus 108 ~VshLAFSsDEs~LAVcaesGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl~e 187 (1324)
.+..+.-++=+-++-+.. .+|.|.+|+=. ..+|+..|-... ..|++++..|+.. ..|.-.-|..+.|||+..
T Consensus 253 ~~~vm~qNP~NaVih~Gh-snGtVSlWSP~-----skePLvKiLcH~-g~V~siAv~~~G~-YMaTtG~Dr~~kIWDlR~ 324 (545)
T KOG1272|consen 253 RTDVMKQNPYNAVIHLGH-SNGTVSLWSPN-----SKEPLVKILCHR-GPVSSIAVDRGGR-YMATTGLDRKVKIWDLRN 324 (545)
T ss_pred ccchhhcCCccceEEEcC-CCceEEecCCC-----CcchHHHHHhcC-CCcceEEECCCCc-EEeecccccceeEeeecc
Confidence 455556666666554444 35788999744 367776655543 6799999999654 677788899999999965
Q ss_pred Cceee----ecceeEEEeccCCCEEEEEecCceEEEc
Q 000733 188 PLEDV----MDNVDAVEWSVKGKFVAVAKKNVLSILT 220 (1324)
Q Consensus 188 ~lk~V----asgVScVcWSPKGKQLVVGlaDGIsQyT 220 (1324)
-..+. ...++.++.|-+| -||+|..+-+.+|+
T Consensus 325 ~~ql~t~~tp~~a~~ls~Sqkg-lLA~~~G~~v~iw~ 360 (545)
T KOG1272|consen 325 FYQLHTYRTPHPASNLSLSQKG-LLALSYGDHVQIWK 360 (545)
T ss_pred ccccceeecCCCcccccccccc-ceeeecCCeeeeeh
Confidence 42222 2678899999999 47777777799996
No 303
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=72.10 E-value=19 Score=41.77 Aligned_cols=50 Identities=20% Similarity=0.140 Sum_probs=29.8
Q ss_pred eEEEEEeCCeEEEEEeCCC--c---eeeecceeEEEeccCCCEEEEEecCc-eEEE
Q 000733 170 SFLALSNVGRLYRGGVNGP--L---EDVMDNVDAVEWSVKGKFVAVAKKNV-LSIL 219 (1324)
Q Consensus 170 lLAVVSsDGsL~Vldl~e~--l---k~VasgVScVcWSPKGKQLVVGlaDG-IsQy 219 (1324)
.+|...=||.++|++...- + +.+..+|.|+++||+-.-+|+|++|+ |..|
T Consensus 265 IlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLW 320 (323)
T KOG0322|consen 265 ILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLW 320 (323)
T ss_pred EEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEee
Confidence 4455555666666665421 1 22346777777777766677777777 6666
No 304
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=72.04 E-value=58 Score=41.84 Aligned_cols=113 Identities=16% Similarity=0.271 Sum_probs=71.4
Q ss_pred eeecCCCCCeeEEEEecCCCEEEEEeecCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCC-CeEEEEEeCC
Q 000733 100 VDVPFENENVDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPE-NSFLALSNVG 178 (1324)
Q Consensus 100 i~VPLp~s~VshLAFSsDEs~LAVcaesGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~a-slLAVVSsDG 178 (1324)
+...+. +++.+..|+-+. +|+...++..|.+||++.-. --++...+....|+||-|..... ..+..|.=..
T Consensus 25 ~~T~i~--~~~li~gss~~k-~a~V~~~~~~LtIWD~~~~~-----lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~ 96 (631)
T PF12234_consen 25 FETGIS--NPSLISGSSIKK-IAVVDSSRSELTIWDTRSGV-----LEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPH 96 (631)
T ss_pred EecCCC--CcceEeecccCc-EEEEECCCCEEEEEEcCCcE-----EEEeeeecCCCceeeceeeecCCCCEEEEEEcCc
Confidence 334444 788888888666 45556678899999987543 11222333346899999988643 2344444455
Q ss_pred eEEEE-----EeCC-C-----ceee------ecceeEEEeccCCCEEEEEecCceEEEcc
Q 000733 179 RLYRG-----GVNG-P-----LEDV------MDNVDAVEWSVKGKFVAVAKKNVLSILTS 221 (1324)
Q Consensus 179 sL~Vl-----dl~e-~-----lk~V------asgVScVcWSPKGKQLVVGlaDGIsQyTP 221 (1324)
.+.++ |+.. . ++.+ ...+...+|-++| .||+|.+|.+.+|..
T Consensus 97 ~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G-~LvV~sGNqlfv~dk 155 (631)
T PF12234_consen 97 HVLLYTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDG-TLVVGSGNQLFVFDK 155 (631)
T ss_pred EEEEEEccchhhhcCCcccceeEEEEeecCCCCCccceeEecCC-eEEEEeCCEEEEECC
Confidence 55444 2221 1 1111 2467789999999 577899999888854
No 305
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=71.74 E-value=6.6 Score=46.65 Aligned_cols=152 Identities=12% Similarity=0.239 Sum_probs=96.3
Q ss_pred eeEEEEecCCCEEEEEeecCCeEEEEEcccccCC-----CCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEEE
Q 000733 109 VDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNK-----EIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRG 183 (1324)
Q Consensus 109 VshLAFSsDEs~LAVcaesGg~L~VYDV~SLlng-----~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vl 183 (1324)
|..|++++|..++..+. +-.|.+|...- .++ ++.|.-.=-|- .-|.+-.+.|...++|+--++.|+++++
T Consensus 167 iNSIS~NsD~Et~lSAD--dLRINLWnlei-~d~sFnIVDIKP~nmEeLt--eVITsaEFhp~~cn~f~YSSSKGtIrLc 241 (433)
T KOG1354|consen 167 INSISVNSDKETFLSAD--DLRINLWNLEI-IDQSFNIVDIKPANMEELT--EVITSAEFHPHHCNVFVYSSSKGTIRLC 241 (433)
T ss_pred eeeeeecCccceEeecc--ceeeeeccccc-cCCceeEEEccccCHHHHH--HHHhhhccCHhHccEEEEecCCCcEEEe
Confidence 44568899999988888 78889998652 222 23332111110 2356667888888899999999999999
Q ss_pred EeCCCc------ee---------------eecceeEEEeccCCCEEEEEecCceEEEccCcccccccccC----ccccCC
Q 000733 184 GVNGPL------ED---------------VMDNVDAVEWSVKGKFVAVAKKNVLSILTSKLKERLPISLS----FKSWVG 238 (1324)
Q Consensus 184 dl~e~l------k~---------------VasgVScVcWSPKGKQLVVGlaDGIsQyTPDgeeKkvIP~P----f~S~I~ 238 (1324)
|+.... ++ +..-|+-|-+|..|.+|..-.-..|.+|.-.++.+.+...| .+..+-
T Consensus 242 DmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~~pv~t~~vh~~lr~kLc 321 (433)
T KOG1354|consen 242 DMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEAKPVETYPVHEYLRSKLC 321 (433)
T ss_pred echhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccCCcceEEeehHhHHHHHH
Confidence 986321 11 12467789999999999866666699996656655554444 111221
Q ss_pred C-CCCCCceeEEEEEEecCCeEEEEEEe
Q 000733 239 D-CDVNCSVKVDSIRWVRRDCIIIGCFQ 265 (1324)
Q Consensus 239 D-~d~d~sV~V~SI~WLeNd~yLFg~vy 265 (1324)
+ ++.|+-+.=-.+.|-.++.++++..|
T Consensus 322 ~lYEnD~IfdKFec~~sg~~~~v~TGsy 349 (433)
T KOG1354|consen 322 SLYENDAIFDKFECSWSGNDSYVMTGSY 349 (433)
T ss_pred HHhhccchhheeEEEEcCCcceEecccc
Confidence 2 22344334445677777766665554
No 306
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=71.69 E-value=48 Score=35.10 Aligned_cols=99 Identities=12% Similarity=0.106 Sum_probs=59.9
Q ss_pred EEeecCCeEEEEEcccccCC---CCcceeEEecCCCcceEEE---EecCCCCCeEEEEEeCCeEEEEEeCCCc----eee
Q 000733 123 VSLYQSPHIHFFSVHSLLNK---EIKPSFSCSLNGSTYVKDI---RWRKKPENSFLALSNVGRLYRGGVNGPL----EDV 192 (1324)
Q Consensus 123 VcaesGg~L~VYDV~SLlng---~t~P~~sisLn~st~VrdL---aWNP~~aslLAVVSsDGsL~Vldl~e~l----k~V 192 (1324)
+|++.++.|.+++-+..... ...++..+.++ ..|++| .+.|....-++++.+.-+|.++|+.+.. +.+
T Consensus 14 ~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin--~~italaaG~l~~~~~~D~LliGt~t~llaYDV~~N~d~Fyke~ 91 (136)
T PF14781_consen 14 ACATTGGKVFIHNPHERGQRTGRQDSDISFLNIN--QEITALAAGRLKPDDGRDCLLIGTQTSLLAYDVENNSDLFYKEV 91 (136)
T ss_pred EEEecCCEEEEECCCccccccccccCceeEEECC--CceEEEEEEecCCCCCcCEEEEeccceEEEEEcccCchhhhhhC
Confidence 34556788999886654321 33455555554 356666 4555554456666777789999997652 445
Q ss_pred ecceeEEEeccCCC---EEEEEecCc-eEEEccCc
Q 000733 193 MDNVDAVEWSVKGK---FVAVAKKNV-LSILTSKL 223 (1324)
Q Consensus 193 asgVScVcWSPKGK---QLVVGlaDG-IsQyTPDg 223 (1324)
.++|.|+.+-.-|. .||+-..|- |.-|.-+|
T Consensus 92 ~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G 126 (136)
T PF14781_consen 92 PDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEG 126 (136)
T ss_pred ccceeEEEEEecCCCCCcEEEECceEEEEEeCCCC
Confidence 68999888643332 444444444 65554443
No 307
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=70.86 E-value=2.2e+02 Score=33.48 Aligned_cols=96 Identities=11% Similarity=0.032 Sum_probs=56.4
Q ss_pred CeeEEEEecCCCEEEEEeec-----CCe-EEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCe--
Q 000733 108 NVDILSLSNDESTLAVSLYQ-----SPH-IHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGR-- 179 (1324)
Q Consensus 108 ~VshLAFSsDEs~LAVcaes-----Gg~-L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGs-- 179 (1324)
...+.-...+..+-+.|... |.. --++|...|..+.. . ..+..+.++|+..-++..++..|+
T Consensus 80 ~~y~~~~~~~~~~~~~~r~~~~~~~~~~~evllD~n~l~~~~~--~--------~~~~~~~~Spdg~~la~~~s~~G~e~ 149 (414)
T PF02897_consen 80 YYYYSRNQGGKNYPVLYRRKTDEEDGPEEEVLLDPNELAKDGG--Y--------VSLGGFSVSPDGKRLAYSLSDGGSEW 149 (414)
T ss_dssp EEEEEEE-SS-SS-EEEEEETTS-TS-C-EEEEEGGGGSTTSS-----------EEEEEEEETTTSSEEEEEEEETTSSE
T ss_pred eEEEEEEcCCCceEEEEEEecccCCCCceEEEEcchHhhccCc--e--------EEeeeeeECCCCCEEEEEecCCCCce
Confidence 34444444444444444432 223 56788888865432 1 234567888876644445567777
Q ss_pred --EEEEEeCCCceeee-----cceeEEEeccCCCEEEEEecC
Q 000733 180 --LYRGGVNGPLEDVM-----DNVDAVEWSVKGKFVAVAKKN 214 (1324)
Q Consensus 180 --L~Vldl~e~lk~Va-----sgVScVcWSPKGKQLVVGlaD 214 (1324)
|+|+|+..+ +.+. ....+++|+++|+.+++..-+
T Consensus 150 ~~l~v~Dl~tg-~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~ 190 (414)
T PF02897_consen 150 YTLRVFDLETG-KFLPDGIENPKFSSVSWSDDGKGFFYTRFD 190 (414)
T ss_dssp EEEEEEETTTT-EEEEEEEEEEESEEEEECTTSSEEEEEECS
T ss_pred EEEEEEECCCC-cCcCCcccccccceEEEeCCCCEEEEEEeC
Confidence 899999766 3332 223359999999999877533
No 308
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=70.27 E-value=19 Score=43.69 Aligned_cols=87 Identities=7% Similarity=0.108 Sum_probs=61.9
Q ss_pred CCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEEEEeCCCcee----eecceeEEEecc
Q 000733 128 SPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGGVNGPLED----VMDNVDAVEWSV 203 (1324)
Q Consensus 128 Gg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl~e~lk~----VasgVScVcWSP 203 (1324)
|-++.+++..+|.. .+ +-+..+..||+|+++|....++.+.+-+..|.|.|+.....+ ....+-+.||--
T Consensus 172 GvGv~~l~~~~fks--sq----~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDl 245 (463)
T KOG1645|consen 172 GVGVQKLESHDFKS--SQ----ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDL 245 (463)
T ss_pred ccceEEeccCCcch--hh----cccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeecc
Confidence 34466666666543 11 222345789999999976666777788889999999765222 136778899998
Q ss_pred CCC-EEEEEecCc-eEEEc
Q 000733 204 KGK-FVAVAKKNV-LSILT 220 (1324)
Q Consensus 204 KGK-QLVVGlaDG-IsQyT 220 (1324)
|.. .|.+|+.|| |.+|.
T Consensus 246 de~h~IYaGl~nG~VlvyD 264 (463)
T KOG1645|consen 246 DERHVIYAGLQNGMVLVYD 264 (463)
T ss_pred CCcceeEEeccCceEEEEE
Confidence 865 667889999 99993
No 309
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=70.05 E-value=89 Score=35.15 Aligned_cols=117 Identities=15% Similarity=0.131 Sum_probs=71.3
Q ss_pred CeeEEEEecCCCEEEEEeecCCeEEEEEcccccCCCCcceeEEecCCCc-ceEEEEecCCCCCeEEEEE---eCCeEEEE
Q 000733 108 NVDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGST-YVKDIRWRKKPENSFLALS---NVGRLYRG 183 (1324)
Q Consensus 108 ~VshLAFSsDEs~LAVcaesGg~L~VYDV~SLlng~t~P~~sisLn~st-~VrdLaWNP~~aslLAVVS---sDGsL~Vl 183 (1324)
.+..-+|..|+.+.++....+....+++.. .+...+.. +...... .|.+|.++|+-. -+|++. .+|.|+|.
T Consensus 67 ~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~---~g~~~~~~-v~~~~~~~~I~~l~vSpDG~-RvA~v~~~~~~~~v~va 141 (253)
T PF10647_consen 67 SLTRPSWDPDGWVWTVDDGSGGVRVVRDSA---SGTGEPVE-VDWPGLRGRITALRVSPDGT-RVAVVVEDGGGGRVYVA 141 (253)
T ss_pred ccccccccCCCCEEEEEcCCCceEEEEecC---CCcceeEE-ecccccCCceEEEEECCCCc-EEEEEEecCCCCeEEEE
Confidence 455667788888777766333322222211 13223221 2221112 799999999776 566665 36899998
Q ss_pred EeC---CC-ce-------ee---ecceeEEEeccCCCEEEEEecCc--eEE-EccCccccccc
Q 000733 184 GVN---GP-LE-------DV---MDNVDAVEWSVKGKFVAVAKKNV--LSI-LTSKLKERLPI 229 (1324)
Q Consensus 184 dl~---e~-lk-------~V---asgVScVcWSPKGKQLVVGlaDG--IsQ-yTPDgeeKkvI 229 (1324)
-+. ++ .. +. ...|+.++|++.+..+|.+...+ +.+ +.+++.....+
T Consensus 142 ~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~~~~~~~~~v~~dG~~~~~l 204 (253)
T PF10647_consen 142 GVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGRSAGGPVVRLVSVDGGPSTPL 204 (253)
T ss_pred EEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEEEeCCCCCceeEEEEccCCccccc
Confidence 763 22 11 11 25889999999999888888887 555 66676554444
No 310
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=69.86 E-value=5.1 Score=49.66 Aligned_cols=64 Identities=11% Similarity=0.099 Sum_probs=52.1
Q ss_pred CcceEEEEecCCCCCeEEEEEeCCeEEEEEeC---CC----cee------eecceeEEEeccCCCEEEEEecCc-eEEE
Q 000733 155 STYVKDIRWRKKPENSFLALSNVGRLYRGGVN---GP----LED------VMDNVDAVEWSVKGKFVAVAKKNV-LSIL 219 (1324)
Q Consensus 155 st~VrdLaWNP~~aslLAVVSsDGsL~Vldl~---e~----lk~------VasgVScVcWSPKGKQLVVGlaDG-IsQy 219 (1324)
-..||++++-|.-+ .|+.++.||.|.+|++. .. ++- +...|.|||-++.|+++..|+-|| |.-|
T Consensus 294 ~d~ir~l~~~~sep-~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w 371 (577)
T KOG0642|consen 294 DDCIRALAFHPSEP-VLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCW 371 (577)
T ss_pred hhhhhhhhcCCCCC-eEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeee
Confidence 36789999866544 79999999999999992 11 111 137999999999999999999999 9888
No 311
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=67.99 E-value=20 Score=41.33 Aligned_cols=107 Identities=15% Similarity=0.108 Sum_probs=69.9
Q ss_pred eeEEEEecCCCEEEEEeecCCeEEEEEcccccCCCCcceeEEec----CCCcceEEEEecCCCCCeEEEEEeCCeEEEEE
Q 000733 109 VDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSL----NGSTYVKDIRWRKKPENSFLALSNVGRLYRGG 184 (1324)
Q Consensus 109 VshLAFSsDEs~LAVcaesGg~L~VYDV~SLlng~t~P~~sisL----n~st~VrdLaWNP~~aslLAVVSsDGsL~Vld 184 (1324)
|..-|.|+...+|++.. ..|.|+|+++.++..+...|-....+ .++..|.++++- +.+.+..-||.++-|.
T Consensus 13 vf~qa~sp~~~~l~agn-~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~----d~~Lls~gdG~V~gw~ 87 (325)
T KOG0649|consen 13 VFAQAISPSKQYLFAGN-LFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH----DDFLLSGGDGLVYGWE 87 (325)
T ss_pred HHHHhhCCcceEEEEec-CCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee----hhheeeccCceEEEee
Confidence 33345677788888766 45799999999999875444222221 344688899883 3456666689998876
Q ss_pred eCCCce-----ee-------------ecceeEEEeccCCCEEEEEecCc-eEEEc
Q 000733 185 VNGPLE-----DV-------------MDNVDAVEWSVKGKFVAVAKKNV-LSILT 220 (1324)
Q Consensus 185 l~e~lk-----~V-------------asgVScVcWSPKGKQLVVGlaDG-IsQyT 220 (1324)
-.+..+ .+ .-.|-+..--|+...|..+..|| +.+|.
T Consensus 88 W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~d 142 (325)
T KOG0649|consen 88 WNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVD 142 (325)
T ss_pred ehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEE
Confidence 543211 10 13445555558888787777888 88884
No 312
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=66.90 E-value=11 Score=43.66 Aligned_cols=70 Identities=19% Similarity=0.173 Sum_probs=55.3
Q ss_pred CeeEEEEecCCCEEEEEeecCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEEEEe
Q 000733 108 NVDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGGV 185 (1324)
Q Consensus 108 ~VshLAFSsDEs~LAVcaesGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl 185 (1324)
.|.-|..-+|+.+||.+.= ++.|+||+-+++ +|++-..- +++.|++++++|+. +.+|+.+.|+.+.+|++
T Consensus 253 Gv~gvrIRpD~KIlATAGW-D~RiRVyswrtl-----~pLAVLky-Hsagvn~vAfspd~-~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 253 GVSGVRIRPDGKILATAGW-DHRIRVYSWRTL-----NPLAVLKY-HSAGVNAVAFSPDC-ELMAAASKDARISLWKL 322 (323)
T ss_pred CccceEEccCCcEEeeccc-CCcEEEEEeccC-----Cchhhhhh-hhcceeEEEeCCCC-chhhhccCCceEEeeec
Confidence 6777888899999887664 479999998875 45443333 24789999999974 58999999999999987
No 313
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=66.85 E-value=26 Score=40.94 Aligned_cols=30 Identities=27% Similarity=0.299 Sum_probs=19.0
Q ss_pred eeEEEEecCCCEEEEEeecCCeEEEEEccc
Q 000733 109 VDILSLSNDESTLAVSLYQSPHIHFFSVHS 138 (1324)
Q Consensus 109 VshLAFSsDEs~LAVcaesGg~L~VYDV~S 138 (1324)
..-||||+||.+|.++.+....|+-|+...
T Consensus 165 ~NGla~SpDg~tly~aDT~~~~i~r~~~d~ 194 (307)
T COG3386 165 PNGLAFSPDGKTLYVADTPANRIHRYDLDP 194 (307)
T ss_pred cCceEECCCCCEEEEEeCCCCeEEEEecCc
Confidence 345677777777777665555666666553
No 314
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=66.61 E-value=27 Score=41.10 Aligned_cols=86 Identities=15% Similarity=0.181 Sum_probs=59.2
Q ss_pred CCeEEEEEcccccCCCCcceeEE-ecCCCcceEEEEecCC--CCC-eEEEEEeCCeEEEEEeCCCce-ee-------e--
Q 000733 128 SPHIHFFSVHSLLNKEIKPSFSC-SLNGSTYVKDIRWRKK--PEN-SFLALSNVGRLYRGGVNGPLE-DV-------M-- 193 (1324)
Q Consensus 128 Gg~L~VYDV~SLlng~t~P~~si-sLn~st~VrdLaWNP~--~as-lLAVVSsDGsL~Vldl~e~lk-~V-------a-- 193 (1324)
-|.+++|++.+... .|+-++ .+.. ..+.+++|+-. ..+ .++.....|.|.++...+..+ .+ .
T Consensus 45 ~Gkl~Lys~~d~~~---~~l~~~q~~dt-s~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~ 120 (339)
T KOG0280|consen 45 SGKLHLYSLEDMKL---SPLDTLQCTDT-STEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKIS 120 (339)
T ss_pred ccceEEEeeccccc---Cccceeeeecc-cccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhh
Confidence 36899999887642 233332 2233 57899999864 334 566778899998887654322 11 1
Q ss_pred -cceeEEEeccCCCEEEEEecCc-eE
Q 000733 194 -DNVDAVEWSVKGKFVAVAKKNV-LS 217 (1324)
Q Consensus 194 -sgVScVcWSPKGKQLVVGlaDG-Is 217 (1324)
.-..|+.|++-|++|+++..+| +.
T Consensus 121 ~~~~lslD~~~~~~~i~vs~s~G~~~ 146 (339)
T KOG0280|consen 121 VVEALSLDISTSGTKIFVSDSRGSIS 146 (339)
T ss_pred heeeeEEEeeccCceEEEEcCCCcEE
Confidence 2356899999999999999999 66
No 315
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=66.34 E-value=82 Score=39.69 Aligned_cols=85 Identities=8% Similarity=0.011 Sum_probs=58.9
Q ss_pred CCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEEEEeCCC--cee---eecceeEEEec
Q 000733 128 SPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGGVNGP--LED---VMDNVDAVEWS 202 (1324)
Q Consensus 128 Gg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl~e~--lk~---VasgVScVcWS 202 (1324)
+-.|+||++.. +.. +..+. ++...|+++.-+ ...+...+.||++.||++... ++. +...|.|+...
T Consensus 310 D~tVkVW~v~n---~~~--l~l~~-~h~~~V~~v~~~---~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~ 380 (537)
T KOG0274|consen 310 DNTVKVWDVTN---GAC--LNLLR-GHTGPVNCVQLD---EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVD 380 (537)
T ss_pred CceEEEEeccC---cce--EEEec-cccccEEEEEec---CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEec
Confidence 56899999882 211 11111 145678888886 557888889999999999733 111 24789998744
Q ss_pred cCCCEEEEEecCc-eEEEccC
Q 000733 203 VKGKFVAVAKKNV-LSILTSK 222 (1324)
Q Consensus 203 PKGKQLVVGlaDG-IsQyTPD 222 (1324)
.. +.+.-|.-|+ |.+|..+
T Consensus 381 ~~-~~~~Sgs~D~~IkvWdl~ 400 (537)
T KOG0274|consen 381 SE-NRLLSGSLDTTIKVWDLR 400 (537)
T ss_pred Cc-ceEEeeeeccceEeecCC
Confidence 44 8999999999 9999543
No 316
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=65.79 E-value=17 Score=43.41 Aligned_cols=102 Identities=8% Similarity=0.088 Sum_probs=68.8
Q ss_pred CeeEEEEecCCCEEEEEeecCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEEEEeCC
Q 000733 108 NVDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGGVNG 187 (1324)
Q Consensus 108 ~VshLAFSsDEs~LAVcaesGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl~e 187 (1324)
.|-||-|+ +.+++.|.. +-.++|||+.+=.. ..+...-+++-+.|+-+.+ ....++..+.|.+|.+|+...
T Consensus 279 aVLhlrf~--ng~mvtcSk-DrsiaVWdm~sps~---it~rrVLvGHrAaVNvVdf---d~kyIVsASgDRTikvW~~st 349 (499)
T KOG0281|consen 279 AVLHLRFS--NGYMVTCSK-DRSIAVWDMASPTD---ITLRRVLVGHRAAVNVVDF---DDKYIVSASGDRTIKVWSTST 349 (499)
T ss_pred eeEEEEEe--CCEEEEecC-CceeEEEeccCchH---HHHHHHHhhhhhheeeecc---ccceEEEecCCceEEEEeccc
Confidence 57778885 456677774 46899999876321 1111111244456666666 334666778899999999964
Q ss_pred C--ceee---ecceeEEEeccCCCEEEEEecCc-eEEEc
Q 000733 188 P--LEDV---MDNVDAVEWSVKGKFVAVAKKNV-LSILT 220 (1324)
Q Consensus 188 ~--lk~V---asgVScVcWSPKGKQLVVGlaDG-IsQyT 220 (1324)
. +..+ .-|+.|+- -.|+.+|.|+.|- |.+|.
T Consensus 350 ~efvRtl~gHkRGIAClQ--Yr~rlvVSGSSDntIRlwd 386 (499)
T KOG0281|consen 350 CEFVRTLNGHKRGIACLQ--YRDRLVVSGSSDNTIRLWD 386 (499)
T ss_pred eeeehhhhcccccceehh--ccCeEEEecCCCceEEEEe
Confidence 3 2222 35777777 7899999999998 99994
No 317
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.90 E-value=11 Score=49.94 Aligned_cols=52 Identities=15% Similarity=0.282 Sum_probs=43.0
Q ss_pred eEEEEEeCCeEEEEEeCCCc------eeeecceeEEEeccCCCEEEEEecCc-eEEEcc
Q 000733 170 SFLALSNVGRLYRGGVNGPL------EDVMDNVDAVEWSVKGKFVAVAKKNV-LSILTS 221 (1324)
Q Consensus 170 lLAVVSsDGsL~Vldl~e~l------k~VasgVScVcWSPKGKQLVVGlaDG-IsQyTP 221 (1324)
.++++++.|-+...|...++ ..++.+|+|+|++.+|+.+++|.++| |..|+-
T Consensus 101 ~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~ 159 (1206)
T KOG2079|consen 101 PIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDM 159 (1206)
T ss_pred eEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEc
Confidence 57888999988776665433 34568999999999999999999999 999953
No 318
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=64.33 E-value=34 Score=38.00 Aligned_cols=64 Identities=16% Similarity=0.117 Sum_probs=45.7
Q ss_pred ceEEEEecCCCCCeEEEEEeCCeEEEEEeCCCcee-------------------eecceeEEEeccCCCEEEEEecCc-e
Q 000733 157 YVKDIRWRKKPENSFLALSNVGRLYRGGVNGPLED-------------------VMDNVDAVEWSVKGKFVAVAKKNV-L 216 (1324)
Q Consensus 157 ~VrdLaWNP~~aslLAVVSsDGsL~Vldl~e~lk~-------------------VasgVScVcWSPKGKQLVVGlaDG-I 216 (1324)
.+.-|.- ..+.+++++.+|.|||||+...... ....|+.+.-+..|.=|| .+.|| .
T Consensus 14 ~~~~l~~---~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV-~lsng~~ 89 (219)
T PF07569_consen 14 PVSFLEC---NGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIV-TLSNGDS 89 (219)
T ss_pred ceEEEEe---CCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEE-EEeCCCE
Confidence 3444543 3567999999999999999754111 125678888888887654 67888 9
Q ss_pred EEEccCcc
Q 000733 217 SILTSKLK 224 (1324)
Q Consensus 217 sQyTPDge 224 (1324)
..|.+++.
T Consensus 90 y~y~~~L~ 97 (219)
T PF07569_consen 90 YSYSPDLG 97 (219)
T ss_pred EEeccccc
Confidence 99987764
No 319
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.85 E-value=81 Score=41.62 Aligned_cols=113 Identities=12% Similarity=0.117 Sum_probs=70.2
Q ss_pred CCeeEEEEecCCCEEEEEeecCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEEEEeC
Q 000733 107 ENVDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGGVN 186 (1324)
Q Consensus 107 s~VshLAFSsDEs~LAVcaesGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl~ 186 (1324)
..++.|+++.|-. .+||.-.+|.|..|.= .++.. ...-..+...+..+|..|..+-+....+-|+| .-.+.++.+.
T Consensus 126 ~p~s~l~Vs~~l~-~Iv~Gf~nG~V~~~~G-Di~RD-rgsr~~~~~~~~~pITgL~~~~d~~s~lFv~T-t~~V~~y~l~ 201 (933)
T KOG2114|consen 126 SPASSLAVSEDLK-TIVCGFTNGLVICYKG-DILRD-RGSRQDYSHRGKEPITGLALRSDGKSVLFVAT-TEQVMLYSLS 201 (933)
T ss_pred CcceEEEEEcccc-EEEEEecCcEEEEEcC-cchhc-cccceeeeccCCCCceeeEEecCCceeEEEEe-cceeEEEEec
Confidence 3578999999965 4555656677777752 22221 11122334445578999999876665434444 3445666665
Q ss_pred CCc---eee-ecceeEEEec-cCCC-EEEEEecCceEEEccCc
Q 000733 187 GPL---EDV-MDNVDAVEWS-VKGK-FVAVAKKNVLSILTSKL 223 (1324)
Q Consensus 187 e~l---k~V-asgVScVcWS-PKGK-QLVVGlaDGIsQyTPDg 223 (1324)
+.. +.+ ..|++--||| -+|+ |+++|..++|..|++++
T Consensus 202 gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e~l~fY~sd~ 244 (933)
T KOG2114|consen 202 GRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSEFLYFYDSDG 244 (933)
T ss_pred CCCcceeeeccCCccceeeecCCCCccEEEecCceEEEEcCCC
Confidence 432 222 3577766766 3355 49999999999998875
No 320
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=63.85 E-value=11 Score=52.35 Aligned_cols=115 Identities=9% Similarity=0.111 Sum_probs=84.0
Q ss_pred eeecCCCCCeeEEEEecCCCEEEEEeecCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEE---Ee
Q 000733 100 VDVPFENENVDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLAL---SN 176 (1324)
Q Consensus 100 i~VPLp~s~VshLAFSsDEs~LAVcaesGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVV---Ss 176 (1324)
+..-.+ ++|+-+.|++.|....+.+. +|.|.+|.+. ..|+.+++-. +....||++ .+..+|.. +.
T Consensus 2246 ~rt~g~-s~vtr~~f~~qGnk~~i~d~-dg~l~l~q~~------pk~~~s~qch-nk~~~Df~F---i~s~~~tag~s~d 2313 (2439)
T KOG1064|consen 2246 FRTAGN-SRVTRSRFNHQGNKFGIVDG-DGDLSLWQAS------PKPYTSWQCH-NKALSDFRF---IGSLLATAGRSSD 2313 (2439)
T ss_pred eeccCc-chhhhhhhcccCCceeeecc-CCceeecccC------CcceeccccC-Cccccceee---eehhhhccccCCC
Confidence 444343 78999999999998877664 4688999876 6788877764 367888888 33434433 56
Q ss_pred CCeEEEEEeCC-Cc-e----eeecceeEEEeccCCCEEEEEecCc-eEEEccCcccccc
Q 000733 177 VGRLYRGGVNG-PL-E----DVMDNVDAVEWSVKGKFVAVAKKNV-LSILTSKLKERLP 228 (1324)
Q Consensus 177 DGsL~Vldl~e-~l-k----~VasgVScVcWSPKGKQLVVGlaDG-IsQyTPDgeeKkv 228 (1324)
+|++-+||..- .. . -+-.+++|++.-|+-..|..|+.+| |..| |...+..
T Consensus 2314 ~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~l~--D~rqrql 2370 (2439)
T KOG1064|consen 2314 NRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEVCLF--DIRQRQL 2370 (2439)
T ss_pred CCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCcEEEe--ehHHHHH
Confidence 88899998642 21 1 2248999999999999999999999 9999 5444433
No 321
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=62.96 E-value=36 Score=42.82 Aligned_cols=107 Identities=21% Similarity=0.297 Sum_probs=71.4
Q ss_pred ecCCCCCeeEEEEecCCCEEEEEee--cCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCC--eEEEEEeC
Q 000733 102 VPFENENVDILSLSNDESTLAVSLY--QSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPEN--SFLALSNV 177 (1324)
Q Consensus 102 VPLp~s~VshLAFSsDEs~LAVcae--sGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~as--lLAVVSsD 177 (1324)
|+|. +.|.+-|.-+.|...+|... ....+.||.+.+- ...|..-..++. ...+.+.|+|...= +.++++..
T Consensus 442 velk-e~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~---~~~~~lVk~~dk-~~~N~vfwsPkG~fvvva~l~s~~ 516 (698)
T KOG2314|consen 442 VELK-ESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETN---IKKPSLVKELDK-KFANTVFWSPKGRFVVVAALVSRR 516 (698)
T ss_pred eecc-hheeeeeeccCCCeEEEEEccccccceeEEEeecC---CCchhhhhhhcc-cccceEEEcCCCcEEEEEEecccc
Confidence 4444 45667777788888877763 3568999999861 122222223332 56788999996542 33345668
Q ss_pred CeEEEEEeCC-Cceee----ecceeEEEeccCCCEEEEEec
Q 000733 178 GRLYRGGVNG-PLEDV----MDNVDAVEWSVKGKFVAVAKK 213 (1324)
Q Consensus 178 GsL~Vldl~e-~lk~V----asgVScVcWSPKGKQLVVGla 213 (1324)
|.|..+|..- ..+.+ ...++-+-|-|-|.+++++..
T Consensus 517 g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss 557 (698)
T KOG2314|consen 517 GDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVTSSS 557 (698)
T ss_pred cceEEEecchhhhhhccCccccccccceECCCCCEEEEeee
Confidence 9999998863 33433 257888999999999998754
No 322
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=62.08 E-value=1.2e+02 Score=37.13 Aligned_cols=103 Identities=17% Similarity=0.157 Sum_probs=54.1
Q ss_pred eEEEEecCCCEEEEEeecCCeEEEEEcccccCCCCcceeEEec--CCCcceEEEEecCCCCCeEEEEEeCCeEEEEEeCC
Q 000733 110 DILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSL--NGSTYVKDIRWRKKPENSFLALSNVGRLYRGGVNG 187 (1324)
Q Consensus 110 shLAFSsDEs~LAVcaesGg~L~VYDV~SLlng~t~P~~sisL--n~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl~e 187 (1324)
..+..+.++. |++++.++..+++|++..=-. ..++.-...+ .+ ..++.+.- .....|+..-|..+-+|+-+
T Consensus 66 ~~~~~s~~~~-llAv~~~~K~~~~f~~~~~~~-~~kl~~~~~v~~~~-~ai~~~~~----~~sv~v~dkagD~~~~di~s 138 (390)
T KOG3914|consen 66 ALVLTSDSGR-LVAVATSSKQRAVFDYRENPK-GAKLLDVSCVPKRP-TAISFIRE----DTSVLVADKAGDVYSFDILS 138 (390)
T ss_pred cccccCCCce-EEEEEeCCCceEEEEEecCCC-cceeeeEeecccCc-ceeeeeec----cceEEEEeecCCceeeeeec
Confidence 3344455555 444555656777887664221 1222211111 11 12222211 22455555555555444422
Q ss_pred ---C-ceeee---cceeEEEeccCCCEEEEEecCc-eEEE
Q 000733 188 ---P-LEDVM---DNVDAVEWSVKGKFVAVAKKNV-LSIL 219 (1324)
Q Consensus 188 ---~-lk~Va---sgVScVcWSPKGKQLVVGlaDG-IsQy 219 (1324)
+ ...++ +-++.|+|||+++.|.++..|+ |.+-
T Consensus 139 ~~~~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs 178 (390)
T KOG3914|consen 139 ADSGRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVS 178 (390)
T ss_pred ccccCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEE
Confidence 1 22222 6788999999999999999998 5443
No 323
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=61.64 E-value=13 Score=29.76 Aligned_cols=20 Identities=20% Similarity=0.526 Sum_probs=14.7
Q ss_pred ceeEEEeccCCCEEEEEecC
Q 000733 195 NVDAVEWSVKGKFVAVAKKN 214 (1324)
Q Consensus 195 gVScVcWSPKGKQLVVGlaD 214 (1324)
.-.+.+|||+||+|+....-
T Consensus 10 ~~~~p~~SpDGk~i~f~s~~ 29 (39)
T PF07676_consen 10 DDGSPAWSPDGKYIYFTSNR 29 (39)
T ss_dssp SEEEEEE-TTSSEEEEEEEC
T ss_pred cccCEEEecCCCEEEEEecC
Confidence 45689999999999876543
No 324
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=57.52 E-value=53 Score=42.90 Aligned_cols=156 Identities=15% Similarity=0.158 Sum_probs=83.1
Q ss_pred eeeecCCCCCeeEEEEecCCCE--EEEEeecCCeEEEEEcccccCCCCcceeEEecC-----------CCcceEEEEecC
Q 000733 99 VVDVPFENENVDILSLSNDEST--LAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLN-----------GSTYVKDIRWRK 165 (1324)
Q Consensus 99 vi~VPLp~s~VshLAFSsDEs~--LAVcaesGg~L~VYDV~SLlng~t~P~~sisLn-----------~st~VrdLaWNP 165 (1324)
+..+|++-..+-+|..=+|.+. |. |.-.+|.+.+|-.+..-+.-+.|..++.-. ........+=+|
T Consensus 265 l~vvpier~~akfv~vlP~~~rd~Lf-clH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cP 343 (1062)
T KOG1912|consen 265 LAVVPIERGGAKFVDVLPDPRRDALF-CLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCP 343 (1062)
T ss_pred eEEEEeccCCcceeEeccCCCcceEE-EEecCCeEEEEEeeccCccccccchhhccccccceEEEeechhcccceeecCC
Confidence 3445555334555555444322 22 232367889887665444322222211111 012233344567
Q ss_pred CCCCeEEEEEeCCeEEEEEeCCC-c---------ee------------e--------------ecceeEEEecc------
Q 000733 166 KPENSFLALSNVGRLYRGGVNGP-L---------ED------------V--------------MDNVDAVEWSV------ 203 (1324)
Q Consensus 166 ~~aslLAVVSsDGsL~Vldl~e~-l---------k~------------V--------------asgVScVcWSP------ 203 (1324)
...+.+|++.++|.+.+|++..+ . .+ + ..|++|+---|
T Consensus 344 s~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~ 423 (1062)
T KOG1912|consen 344 STPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTK 423 (1062)
T ss_pred CChhhhhhhhhcchhHHHhhhcCCcCcccccccccccccccccCceeehhhccccchhhcCCCCCCceeeecccCcccce
Confidence 66678999999999999988632 0 00 0 13555543322
Q ss_pred -----CCC-------EEEEEecCc-eEEEccCcccccccccCccccCCCCCCCCceeEEEEEEecCCeEE-EEEEee
Q 000733 204 -----KGK-------FVAVAKKNV-LSILTSKLKERLPISLSFKSWVGDCDVNCSVKVDSIRWVRRDCII-IGCFQL 266 (1324)
Q Consensus 204 -----KGK-------QLVVGlaDG-IsQyTPDgeeKkvIP~Pf~S~I~D~d~d~sV~V~SI~WLeNd~yL-Fg~vys 266 (1324)
-|+ .+|+|+++| |-.|. ... .-|.+.+ +. ....|-+|.|+++..++ |+|.+.
T Consensus 424 ~~~~p~~n~~~~~~pLvAvGT~sGTV~vvd--vst-~~v~~~f------sv--ht~~VkgleW~g~sslvSfsys~~ 489 (1062)
T KOG1912|consen 424 VENDPGGNTPAGTVPLVAVGTNSGTVDVVD--VST-NAVAASF------SV--HTSLVKGLEWLGNSSLVSFSYSHV 489 (1062)
T ss_pred eecCCCCCccceeeeeEEeecCCceEEEEE--ecc-hhhhhhh------cc--cccceeeeeeccceeEEEeeeccc
Confidence 233 468999999 88883 211 1122222 11 23468999999997766 665544
No 325
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=57.24 E-value=8.3 Score=40.71 Aligned_cols=26 Identities=38% Similarity=0.588 Sum_probs=22.5
Q ss_pred eeEEEeccCCCEEEEEecCceEEE---ccC
Q 000733 196 VDAVEWSVKGKFVAVAKKNVLSIL---TSK 222 (1324)
Q Consensus 196 VScVcWSPKGKQLVVGlaDGIsQy---TPD 222 (1324)
..|++||.+| |||++..++|.++ +|.
T Consensus 7 ~~~l~WS~Dg-~laV~t~~~v~IL~~~~P~ 35 (173)
T PF12657_consen 7 PNALAWSEDG-QLAVATGESVHILDPQTPN 35 (173)
T ss_pred CcCeeECCCC-CEEEEcCCeEEEEeccCCc
Confidence 4689999999 8999999999999 554
No 326
>PRK13616 lipoprotein LpqB; Provisional
Probab=57.23 E-value=96 Score=39.49 Aligned_cols=108 Identities=15% Similarity=0.128 Sum_probs=67.3
Q ss_pred CCeeEEEEecCCCEEEEEeecCCeEEEEEcccccCCC--CcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeE--EE
Q 000733 107 ENVDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKE--IKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRL--YR 182 (1324)
Q Consensus 107 s~VshLAFSsDEs~LAVcaesGg~L~VYDV~SLlng~--t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL--~V 182 (1324)
..|..+.+|+||..||+.. ++.|++--|..--.|. ......+...-+..+.++.|.++.. |+|+++++.- +.
T Consensus 448 g~Issl~wSpDG~RiA~i~--~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~--L~V~~~~~~~~v~~ 523 (591)
T PRK13616 448 GPISELQLSRDGVRAAMII--GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDS--LVVGRSDPEHPVWY 523 (591)
T ss_pred CCcCeEEECCCCCEEEEEE--CCEEEEEEEEeCCCCceeecccEEeecccCCccccceEecCCE--EEEEecCCCCceEE
Confidence 3699999999999999988 6777765444422232 1111122222223468899988654 6677766554 44
Q ss_pred EEeCCCc-ee-----eecceeEEEeccCCCEEEEEecCceEEEc
Q 000733 183 GGVNGPL-ED-----VMDNVDAVEWSVKGKFVAVAKKNVLSILT 220 (1324)
Q Consensus 183 ldl~e~l-k~-----VasgVScVcWSPKGKQLVVGlaDGIsQyT 220 (1324)
.++.... +. +..+|.+|+=++ ..|.+...+|+.|+.
T Consensus 524 v~vDG~~~~~~~~~n~~~~v~~vaa~~--~~iyv~~~~g~~~l~ 565 (591)
T PRK13616 524 VNLDGSNSDALPSRNLSAPVVAVAASP--STVYVTDARAVLQLP 565 (591)
T ss_pred EecCCccccccCCCCccCceEEEecCC--ceEEEEcCCceEEec
Confidence 4554332 22 246788888776 368788888877774
No 327
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=56.59 E-value=68 Score=39.11 Aligned_cols=111 Identities=13% Similarity=0.161 Sum_probs=77.7
Q ss_pred CeeEEEEecCCCEEEEEeecCCeEEEEEcccccCCCC-cceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEEEEeC
Q 000733 108 NVDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEI-KPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGGVN 186 (1324)
Q Consensus 108 ~VshLAFSsDEs~LAVcaesGg~L~VYDV~SLlng~t-~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl~ 186 (1324)
.|..|-||.++.+||... .+-.+.+|.|..++...+ +|+.-.--.+-..|.+|++|-... .+.---++|++..-|+.
T Consensus 58 CiNAlqFS~N~~~L~SGG-DD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~-~~~SG~~~~~VI~HDiE 135 (609)
T KOG4227|consen 58 CINALQFSHNDRFLASGG-DDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENR-FLYSGERWGTVIKHDIE 135 (609)
T ss_pred ccceeeeccCCeEEeecC-CcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCe-eEecCCCcceeEeeecc
Confidence 589999999999998765 334789999999986533 665433223335788999976432 23333567777777775
Q ss_pred CCcee-ee------cceeEEEeccCCCEEEEEecCc-eEEEc
Q 000733 187 GPLED-VM------DNVDAVEWSVKGKFVAVAKKNV-LSILT 220 (1324)
Q Consensus 187 e~lk~-Va------sgVScVcWSPKGKQLVVGlaDG-IsQyT 220 (1324)
...++ ++ ..|--++-+|--..+++-+.+| |.+|.
T Consensus 136 t~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D 177 (609)
T KOG4227|consen 136 TKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFID 177 (609)
T ss_pred cceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEe
Confidence 44222 21 4677788889988999999999 88883
No 328
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=56.48 E-value=1.3e+02 Score=35.66 Aligned_cols=123 Identities=11% Similarity=0.039 Sum_probs=67.8
Q ss_pred CeeEEEEecCCCEEEEEeecCCeEEE-------EEcc------ccc-CCCCcceeEEecCC---CcceEEEEecCCC---
Q 000733 108 NVDILSLSNDESTLAVSLYQSPHIHF-------FSVH------SLL-NKEIKPSFSCSLNG---STYVKDIRWRKKP--- 167 (1324)
Q Consensus 108 ~VshLAFSsDEs~LAVcaesGg~L~V-------YDV~------SLl-ng~t~P~~sisLn~---st~VrdLaWNP~~--- 167 (1324)
.++.|.+.+|+.+|+|+. ||.-.- .++. .++ ..+-+-+..+.+.+ -..||-|+|+++-
T Consensus 100 GPHel~l~pDG~tLvVAN--GGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~ 177 (305)
T PF07433_consen 100 GPHELLLMPDGETLVVAN--GGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVA 177 (305)
T ss_pred ChhhEEEcCCCCEEEEEc--CCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEE
Confidence 589999999999999988 552111 0111 001 00111122233311 1346677776642
Q ss_pred ------------CCeEEEEEeCCeEEEEEeCCCc-eeeecceeEEEeccCCCEEEEEecCc--eEEE-ccCccccccccc
Q 000733 168 ------------ENSFLALSNVGRLYRGGVNGPL-EDVMDNVDAVEWSVKGKFVAVAKKNV--LSIL-TSKLKERLPISL 231 (1324)
Q Consensus 168 ------------aslLAVVSsDGsL~Vldl~e~l-k~VasgVScVcWSPKGKQLVVGlaDG--IsQy-TPDgeeKkvIP~ 231 (1324)
..++++...++.+..+...+.. ..+..-+-+||++.+|..|++.+.-| +.+| .-++.....++.
T Consensus 178 ~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l 257 (305)
T PF07433_consen 178 FAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPL 257 (305)
T ss_pred EEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeecccc
Confidence 1244444444444444443321 23346788999999999999999988 7777 233444444444
Q ss_pred C
Q 000733 232 S 232 (1324)
Q Consensus 232 P 232 (1324)
|
T Consensus 258 ~ 258 (305)
T PF07433_consen 258 P 258 (305)
T ss_pred C
Confidence 3
No 329
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=56.02 E-value=29 Score=41.61 Aligned_cols=80 Identities=18% Similarity=0.245 Sum_probs=56.1
Q ss_pred CeeEEEEecCCCEEEEEeecCCeEEEEEcccccCC---------CCcceeEE--ecCCCcceEEEEecCCC-CCeEEEEE
Q 000733 108 NVDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNK---------EIKPSFSC--SLNGSTYVKDIRWRKKP-ENSFLALS 175 (1324)
Q Consensus 108 ~VshLAFSsDEs~LAVcaesGg~L~VYDV~SLlng---------~t~P~~si--sLn~st~VrdLaWNP~~-aslLAVVS 175 (1324)
.++.|-|..+|.+||+.. .||.|-+|.-....++ .-.|-+-+ +++-...|..+.|.+.. ...|.+.+
T Consensus 27 iis~vef~~~Ge~LatGd-kgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlst 105 (433)
T KOG1354|consen 27 IISAVEFDHYGERLATGD-KGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLST 105 (433)
T ss_pred ceeeEEeecccceEeecC-CCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEec
Confidence 689999999999999977 4567777765544332 11121111 22223578999999864 35899999
Q ss_pred eCCeEEEEEeCCC
Q 000733 176 NVGRLYRGGVNGP 188 (1324)
Q Consensus 176 sDGsL~Vldl~e~ 188 (1324)
+|.++.+|.+.+.
T Consensus 106 NdktiKlWKi~er 118 (433)
T KOG1354|consen 106 NDKTIKLWKIRER 118 (433)
T ss_pred CCcceeeeeeecc
Confidence 9999999999754
No 330
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=55.92 E-value=1.2e+02 Score=35.66 Aligned_cols=67 Identities=9% Similarity=-0.023 Sum_probs=53.1
Q ss_pred ceEEEEecCCCCCeEEEEEeCCeEEEEEeCCC------ceeeecceeEEEeccC-CCEEEEEecCc-eEEEccCc
Q 000733 157 YVKDIRWRKKPENSFLALSNVGRLYRGGVNGP------LEDVMDNVDAVEWSVK-GKFVAVAKKNV-LSILTSKL 223 (1324)
Q Consensus 157 ~VrdLaWNP~~aslLAVVSsDGsL~Vldl~e~------lk~VasgVScVcWSPK-GKQLVVGlaDG-IsQyTPDg 223 (1324)
.|..+.=-|...+.+++-+.||.+.+||.... .+.....+.-|-+.|| |..|.+...|| +.-|.-.+
T Consensus 181 ~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 181 AVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred cchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 48888888888888888899999999998653 1223466777888888 78999999999 99996443
No 331
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=54.43 E-value=58 Score=38.97 Aligned_cols=80 Identities=14% Similarity=0.228 Sum_probs=55.6
Q ss_pred eeecCCCCCeeEEEEecC--CCEEEEEeecCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeC
Q 000733 100 VDVPFENENVDILSLSND--ESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNV 177 (1324)
Q Consensus 100 i~VPLp~s~VshLAFSsD--Es~LAVcaesGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsD 177 (1324)
.++|.+ .+..|-|+.| +..||... ++|.|.|||++..=. ...+-...+.. +.+|||..++-+.. .+++|.+|
T Consensus 301 ~~~~~c--~iWfirf~~d~~~~~la~gn-q~g~v~vwdL~~~ep-~~~ttl~~s~~-~~tVRQ~sfS~dgs-~lv~vcdd 374 (385)
T KOG1034|consen 301 FDYPMC--DIWFIRFAFDPWQKMLALGN-QSGKVYVWDLDNNEP-PKCTTLTHSKS-GSTVRQTSFSRDGS-ILVLVCDD 374 (385)
T ss_pred eccCcc--ceEEEEEeecHHHHHHhhcc-CCCcEEEEECCCCCC-ccCceEEeccc-cceeeeeeecccCc-EEEEEeCC
Confidence 345555 7888877655 66666655 457899999886421 23343444444 47899999988554 77888889
Q ss_pred CeEEEEEe
Q 000733 178 GRLYRGGV 185 (1324)
Q Consensus 178 GsL~Vldl 185 (1324)
|++.-||-
T Consensus 375 ~~Vwrwdr 382 (385)
T KOG1034|consen 375 GTVWRWDR 382 (385)
T ss_pred CcEEEEEe
Confidence 99998874
No 332
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=54.42 E-value=66 Score=33.03 Aligned_cols=50 Identities=16% Similarity=-0.001 Sum_probs=39.8
Q ss_pred CeEEEEEeCCeEEEEEeCCCceee--ecceeEEEeccCCCEEEEEecCc-eEEE
Q 000733 169 NSFLALSNVGRLYRGGVNGPLEDV--MDNVDAVEWSVKGKFVAVAKKNV-LSIL 219 (1324)
Q Consensus 169 slLAVVSsDGsL~Vldl~e~lk~V--asgVScVcWSPKGKQLVVGlaDG-IsQy 219 (1324)
+.++|-+.|..++|++-.+-+..+ .+.|+++|=... .+.++|++|| |-.|
T Consensus 16 ~eLlvGs~D~~IRvf~~~e~~~Ei~e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY 68 (111)
T PF14783_consen 16 NELLVGSDDFEIRVFKGDEIVAEITETDKVTSLCSLGG-GRFAYALANGTVGVY 68 (111)
T ss_pred ceEEEecCCcEEEEEeCCcEEEEEecccceEEEEEcCC-CEEEEEecCCEEEEE
Confidence 578889999999999875443222 478999986666 5699999999 9999
No 333
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=53.69 E-value=66 Score=40.56 Aligned_cols=77 Identities=17% Similarity=0.242 Sum_probs=52.6
Q ss_pred eeEEEEecCCCEEEEEeecCCeEEEEEc------ccccCCCCcceeEEec----------CCCcceEEEEecCCC--CCe
Q 000733 109 VDILSLSNDESTLAVSLYQSPHIHFFSV------HSLLNKEIKPSFSCSL----------NGSTYVKDIRWRKKP--ENS 170 (1324)
Q Consensus 109 VshLAFSsDEs~LAVcaesGg~L~VYDV------~SLlng~t~P~~sisL----------n~st~VrdLaWNP~~--asl 170 (1324)
|+.|..|..|+.++...-. +|.|..+ .+... +..|...|++ ++.-++++.+|-|.. ...
T Consensus 106 V~~vl~s~~GS~VaL~G~~--Gi~vMeLp~rwG~~s~~e-Dgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~h 182 (741)
T KOG4460|consen 106 VYQVLLSPTGSHVALIGIK--GLMVMELPKRWGKNSEFE-DGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPH 182 (741)
T ss_pred EEEEEecCCCceEEEecCC--eeEEEEchhhcCccceec-CCCceEEEEeecccceeeccCCceeeeeccccCCccCCce
Confidence 7888999999976666533 3444333 22221 2333333322 455789999999986 668
Q ss_pred EEEEEeCCeEEEEEeCCC
Q 000733 171 FLALSNVGRLYRGGVNGP 188 (1324)
Q Consensus 171 LAVVSsDGsL~Vldl~e~ 188 (1324)
+.++++|..+++||+...
T Consensus 183 L~iL~sdnviRiy~lS~~ 200 (741)
T KOG4460|consen 183 LVLLTSDNVIRIYSLSEP 200 (741)
T ss_pred EEEEecCcEEEEEecCCc
Confidence 999999999999999754
No 334
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=50.90 E-value=63 Score=43.75 Aligned_cols=156 Identities=15% Similarity=0.106 Sum_probs=89.4
Q ss_pred CCCCCCCcceEeeCCcceEEEEEcCCceEEEEehHHHHHHhhcccCCcc---cccccceeeeecCCCCCeeEEEEecCCC
Q 000733 43 DLQNPPSLPLAVSQLSHQLIFAAHSSGFCVARTNDVIDAAKEMKENGTR---CCVQELSVVDVPFENENVDILSLSNDES 119 (1324)
Q Consensus 43 dLP~~~sSLLAVSN~K~GLvfAAgpdGLvVarTsDLr~a~ksa~en~tv---~~~~dl~vi~VPLp~s~VshLAFSsDEs 119 (1324)
+.-.....++|++| ...|.+++..+-|+...|.|.....-.+++|.+. ...+. ++.+-.++..+..|-++..|.
T Consensus 48 a~sn~ysl~Fa~~n-sk~L~vfgtknlLi~~it~D~~n~~Vd~~~~~t~~v~k~~pi--~~~v~~~D~t~s~v~~tsng~ 124 (1405)
T KOG3630|consen 48 AISNSYSLFFAASN-SKSLAVFGTKNLLIDHITSDSTNSLVDADENLTFKVEKEIPI--VIFVCFHDATDSVVVSTSNGE 124 (1405)
T ss_pred hcccccceEEEecC-Ccceeeeccccceeecccccccccccccccccceeeeccccc--eEEEeccCCceEEEEEecCCc
Confidence 44556888999999 8889999999999998888887655444444321 11122 123334444577777777777
Q ss_pred EEEEEeecCCeEEEEEccc-------------------------------ccCCC---------CcceeEEecCCCcceE
Q 000733 120 TLAVSLYQSPHIHFFSVHS-------------------------------LLNKE---------IKPSFSCSLNGSTYVK 159 (1324)
Q Consensus 120 ~LAVcaesGg~L~VYDV~S-------------------------------Llng~---------t~P~~sisLn~st~Vr 159 (1324)
.+++-.-..-....|.... |.+.. .....+..+ .....
T Consensus 125 ~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p~--t~~~T 202 (1405)
T KOG3630|consen 125 AVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFPV--TNSQT 202 (1405)
T ss_pred eEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhhhhcccCc--cccee
Confidence 6665542101111111110 00000 000001111 24578
Q ss_pred EEEecCCCCCeEEEEEeCCeEEEEEeCCCcee-e-------ecceeEEEeccC
Q 000733 160 DIRWRKKPENSFLALSNVGRLYRGGVNGPLED-V-------MDNVDAVEWSVK 204 (1324)
Q Consensus 160 dLaWNP~~aslLAVVSsDGsL~Vldl~e~lk~-V-------asgVScVcWSPK 204 (1324)
+++|+|-.- =++|--++|++..|.-.-+++. + .-.|.||||=--
T Consensus 203 av~WSprGK-Ql~iG~nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~v~Wl~t 254 (1405)
T KOG3630|consen 203 AVLWSPRGK-QLFIGRNNGTEVQYEPSLEIKSEIPEPPVEENYRVLSVTWLST 254 (1405)
T ss_pred eEEeccccc-eeeEecCCCeEEEeecccceeecccCCCcCCCcceeEEEEecc
Confidence 999999665 4788889999877754433221 1 258999999433
No 335
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=50.81 E-value=3.2e+02 Score=32.33 Aligned_cols=105 Identities=10% Similarity=0.059 Sum_probs=55.5
Q ss_pred CeeEEEEecCCCEEEEEeecCCeEE-EEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEEEEeC
Q 000733 108 NVDILSLSNDESTLAVSLYQSPHIH-FFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGGVN 186 (1324)
Q Consensus 108 ~VshLAFSsDEs~LAVcaesGg~L~-VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl~ 186 (1324)
.+.-+..+.|+.+|+|+. .|.+. -+| .|. .....+..+.+..|..+.|+|+ ..+-+++..|.|+.-+..
T Consensus 146 s~~~~~r~~dG~~vavs~--~G~~~~s~~-----~G~-~~w~~~~r~~~~riq~~gf~~~--~~lw~~~~Gg~~~~s~~~ 215 (302)
T PF14870_consen 146 SINDITRSSDGRYVAVSS--RGNFYSSWD-----PGQ-TTWQPHNRNSSRRIQSMGFSPD--GNLWMLARGGQIQFSDDP 215 (302)
T ss_dssp -EEEEEE-TTS-EEEEET--TSSEEEEE------TT--SS-EEEE--SSS-EEEEEE-TT--S-EEEEETTTEEEEEE-T
T ss_pred eeEeEEECCCCcEEEEEC--cccEEEEec-----CCC-ccceEEccCccceehhceecCC--CCEEEEeCCcEEEEccCC
Confidence 466677889999988886 44332 222 221 1111122223478999999997 346667899999887732
Q ss_pred CCc----e------eeecceeEEEeccCCCEEEEEecCceEEEccCc
Q 000733 187 GPL----E------DVMDNVDAVEWSVKGKFVAVAKKNVLSILTSKL 223 (1324)
Q Consensus 187 e~l----k------~VasgVScVcWSPKGKQLVVGlaDGIsQyTPDg 223 (1324)
+.. + .-.-++..++|.+++.-. ++..+|...++.|+
T Consensus 216 ~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~w-a~gg~G~l~~S~Dg 261 (302)
T PF14870_consen 216 DDGETWSEPIIPIKTNGYGILDLAYRPPNEIW-AVGGSGTLLVSTDG 261 (302)
T ss_dssp TEEEEE---B-TTSS--S-EEEEEESSSS-EE-EEESTT-EEEESST
T ss_pred CCccccccccCCcccCceeeEEEEecCCCCEE-EEeCCccEEEeCCC
Confidence 211 1 112468899999996544 45566644455553
No 336
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=50.61 E-value=17 Score=47.35 Aligned_cols=86 Identities=13% Similarity=0.203 Sum_probs=61.7
Q ss_pred EEecCCCCCeEEEEE----eCCeEEEE-EeCCCceeee--cceeEEEeccCCCEEEEEecCc-eEEEccCcccccccccC
Q 000733 161 IRWRKKPENSFLALS----NVGRLYRG-GVNGPLEDVM--DNVDAVEWSVKGKFVAVAKKNV-LSILTSKLKERLPISLS 232 (1324)
Q Consensus 161 LaWNP~~aslLAVVS----sDGsL~Vl-dl~e~lk~Va--sgVScVcWSPKGKQLVVGlaDG-IsQyTPDgeeKkvIP~P 232 (1324)
..|-|..+ +|||.+ ..|++-|+ |.++..+.+. -.|+++||.|.---|+.|=.-| +..|.-.-.+..+++.|
T Consensus 21 ~SWHPseP-lfAVA~fS~er~GSVtIfadtGEPqr~Vt~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~t 99 (1416)
T KOG3617|consen 21 SSWHPSEP-LFAVASFSPERGGSVTIFADTGEPQRDVTYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVET 99 (1416)
T ss_pred cccCCCCc-eeEEEEecCCCCceEEEEecCCCCCcccccceehhhhccChHHHHHhhccccceeEEEecCCceeeeeccC
Confidence 45888655 677763 68888887 4455555553 6788999999999999999999 88887666666677776
Q ss_pred ccccCCCCCCCCceeEEEEEEecCCe
Q 000733 233 FKSWVGDCDVNCSVKVDSIRWVRRDC 258 (1324)
Q Consensus 233 f~S~I~D~d~d~sV~V~SI~WLeNd~ 258 (1324)
+ +..+..+.|-....
T Consensus 100 h-----------~a~i~~l~wS~~G~ 114 (1416)
T KOG3617|consen 100 H-----------PAPIQGLDWSHDGT 114 (1416)
T ss_pred C-----------CCCceeEEecCCCC
Confidence 4 23466677765543
No 337
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=50.59 E-value=3.6e+02 Score=31.46 Aligned_cols=21 Identities=14% Similarity=0.189 Sum_probs=16.7
Q ss_pred ceeEEEeccCCCEEEEEecCc
Q 000733 195 NVDAVEWSVKGKFVAVAKKNV 215 (1324)
Q Consensus 195 gVScVcWSPKGKQLVVGlaDG 215 (1324)
+.-+++++|+|+.|.++.+..
T Consensus 148 G~E~la~~~dG~~l~~~~E~~ 168 (326)
T PF13449_consen 148 GFEGLAVSPDGRTLFAAMESP 168 (326)
T ss_pred CeEEEEECCCCCEEEEEECcc
Confidence 566899999999887776554
No 338
>PRK14068 exodeoxyribonuclease VII small subunit; Provisional
Probab=50.31 E-value=65 Score=31.00 Aligned_cols=60 Identities=20% Similarity=0.485 Sum_probs=48.4
Q ss_pred ccCCHHHHHHHHHHHHHhhhccCCccccchhhhhccHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHHh
Q 000733 753 QSGNIKEMTKELDMLLQSIEETGGFRDACTVFQRQKVEELEEGIGSLSEKCGMWRSIMDERLQEIQNLFDK 823 (1324)
Q Consensus 753 q~~ni~em~keld~ll~~ie~~ggf~dac~~~~~~~v~~~e~~~~~l~~~c~~~~~~~~~~~~~~~~~~~k 823 (1324)
+--+..|.-++|+.+++-||.+ .+.+..++..+|+||. |+..|+ ..+++--.+|+.|+++
T Consensus 4 ~~~sfEeal~~Le~IV~~LE~g-------dl~Leesl~lyeeG~~-L~k~C~---~~L~~ae~kv~~l~~~ 63 (76)
T PRK14068 4 ETQSFEEMMQELEQIVQKLDNE-------TVSLEESLDLYQRGMK-LSAACD---TTLKNAEKKVNDLIKE 63 (76)
T ss_pred CccCHHHHHHHHHHHHHHHHcC-------CCCHHHHHHHHHHHHH-HHHHHH---HHHHHHHHHHHHHHhc
Confidence 3357899999999999999976 4788999999999996 778886 4566666777777654
No 339
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=48.89 E-value=63 Score=35.91 Aligned_cols=75 Identities=15% Similarity=0.102 Sum_probs=42.5
Q ss_pred CCeeEEEEecCCCEEEEEeecCCeEEEEEcccccC---C-CCcceeEEec----CCCcceEEEEecCCCCCeEEEEEeCC
Q 000733 107 ENVDILSLSNDESTLAVSLYQSPHIHFFSVHSLLN---K-EIKPSFSCSL----NGSTYVKDIRWRKKPENSFLALSNVG 178 (1324)
Q Consensus 107 s~VshLAFSsDEs~LAVcaesGg~L~VYDV~SLln---g-~t~P~~sisL----n~st~VrdLaWNP~~aslLAVVSsDG 178 (1324)
+.+.+ +.+++.+|.+... .|.+++||+..... . ...|+..... .....|..+.-+.+. .-+|..+||
T Consensus 13 s~~~~--l~~~~~~Ll~iT~-~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G--~PiV~lsng 87 (219)
T PF07569_consen 13 SPVSF--LECNGSYLLAITS-SGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNG--VPIVTLSNG 87 (219)
T ss_pred CceEE--EEeCCCEEEEEeC-CCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCC--CEEEEEeCC
Confidence 34555 4567777655554 57999999986532 1 2333332110 122456666666332 345556678
Q ss_pred eEEEEEeC
Q 000733 179 RLYRGGVN 186 (1324)
Q Consensus 179 sL~Vldl~ 186 (1324)
..|+|+..
T Consensus 88 ~~y~y~~~ 95 (219)
T PF07569_consen 88 DSYSYSPD 95 (219)
T ss_pred CEEEeccc
Confidence 88888765
No 340
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=48.28 E-value=1.7e+02 Score=34.86 Aligned_cols=106 Identities=10% Similarity=-0.011 Sum_probs=69.1
Q ss_pred CeeEEEEecCCCEEEEEeecCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeC--CeEEEEEe
Q 000733 108 NVDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNV--GRLYRGGV 185 (1324)
Q Consensus 108 ~VshLAFSsDEs~LAVcaesGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsD--GsL~Vldl 185 (1324)
.+..+++++|+..+.|+.+..+.|.+++.....-.. +.-.-....+..-..+.++|+....++.+..+ +.+.+.|.
T Consensus 161 ~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~--~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~ 238 (381)
T COG3391 161 TPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR--GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDT 238 (381)
T ss_pred CcceEEECCCCCeEEEEecCCCeEEEEeCCCcceec--cccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeC
Confidence 358999999999999999778899999955332110 11000111223457889999877667766666 57777777
Q ss_pred CCCce-ee----ec-ceeEEEeccCCCEEEEEecCc
Q 000733 186 NGPLE-DV----MD-NVDAVEWSVKGKFVAVAKKNV 215 (1324)
Q Consensus 186 ~e~lk-~V----as-gVScVcWSPKGKQLVVGlaDG 215 (1324)
..+.. .. .. ....+.-+|+|+.+.+....+
T Consensus 239 ~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~ 274 (381)
T COG3391 239 ATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQG 274 (381)
T ss_pred CCceEEEeccccccCCCCceeECCCCCEEEEEecCC
Confidence 65411 11 12 244577789999998886664
No 341
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=47.23 E-value=27 Score=43.07 Aligned_cols=105 Identities=10% Similarity=0.039 Sum_probs=74.8
Q ss_pred CeeEEEEecCCCEEEEEeecCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEEEEeCC
Q 000733 108 NVDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGGVNG 187 (1324)
Q Consensus 108 ~VshLAFSsDEs~LAVcaesGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl~e 187 (1324)
.|..|-|=+-.-.|+.+.+ .|.|.--||..- .. +.++.+.. ..+..+.=||-.+ .+-+--.+|++.+|.=+.
T Consensus 211 ~v~rLeFLPyHfLL~~~~~-~G~L~Y~DVS~G---kl--Va~~~t~~-G~~~vm~qNP~Na-Vih~GhsnGtVSlWSP~s 282 (545)
T KOG1272|consen 211 RVARLEFLPYHFLLVAASE-AGFLKYQDVSTG---KL--VASIRTGA-GRTDVMKQNPYNA-VIHLGHSNGTVSLWSPNS 282 (545)
T ss_pred chhhhcccchhheeeeccc-CCceEEEeechh---hh--hHHHHccC-CccchhhcCCccc-eEEEcCCCceEEecCCCC
Confidence 5777777777776665554 468888888753 21 22333432 4677888999443 455667899999997653
Q ss_pred C---cee--eecceeEEEeccCCCEEEEEecCc-eEEEc
Q 000733 188 P---LED--VMDNVDAVEWSVKGKFVAVAKKNV-LSILT 220 (1324)
Q Consensus 188 ~---lk~--VasgVScVcWSPKGKQLVVGlaDG-IsQyT 220 (1324)
. +++ +.+.|++++.-++|.++|+.+.|- +.+|.
T Consensus 283 kePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWD 321 (545)
T KOG1272|consen 283 KEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWD 321 (545)
T ss_pred cchHHHHHhcCCCcceEEECCCCcEEeecccccceeEee
Confidence 3 232 248999999999999999999998 99994
No 342
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=47.10 E-value=44 Score=43.82 Aligned_cols=114 Identities=13% Similarity=0.144 Sum_probs=83.6
Q ss_pred CeeEEEEecCCCEEEEEeecCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEEEEeCC
Q 000733 108 NVDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGGVNG 187 (1324)
Q Consensus 108 ~VshLAFSsDEs~LAVcaesGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl~e 187 (1324)
.|++++|---|.+++... ++-.+.||++.+- .-+++++ ++++.|++++-+-+. -++|..++|--+.||.+-.
T Consensus 192 aVyca~fDrtg~~Iitgs-dd~lvKiwS~et~-----~~lAs~r-Ghs~ditdlavs~~n-~~iaaaS~D~vIrvWrl~~ 263 (1113)
T KOG0644|consen 192 AVYCAIFDRTGRYIITGS-DDRLVKIWSMETA-----RCLASCR-GHSGDITDLAVSSNN-TMIAAASNDKVIRVWRLPD 263 (1113)
T ss_pred heeeeeeccccceEeecC-ccceeeeeeccch-----hhhccCC-CCccccchhccchhh-hhhhhcccCceEEEEecCC
Confidence 388999988888876655 3457889986642 2222222 345789999886643 3788899999999999976
Q ss_pred C--ceee---ecceeEEEeccCCCEEEEEecCc-eEEEccCcccccccccCc
Q 000733 188 P--LEDV---MDNVDAVEWSVKGKFVAVAKKNV-LSILTSKLKERLPISLSF 233 (1324)
Q Consensus 188 ~--lk~V---asgVScVcWSPKGKQLVVGlaDG-IsQyTPDgeeKkvIP~Pf 233 (1324)
+ +.++ .+.|+++++||.- .-..|| +.+|.-.++.....|+|.
T Consensus 264 ~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~ 311 (1113)
T KOG0644|consen 264 GAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPL 311 (1113)
T ss_pred CchHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCC
Confidence 5 2333 4789999999987 456778 888877777888888884
No 343
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.87 E-value=67 Score=42.00 Aligned_cols=85 Identities=14% Similarity=0.184 Sum_probs=56.6
Q ss_pred CCCeEEEEEeCCeEEEEEeCCCc--e--eeecceeEEEeccC-----CCEEEEEecCceEEEccC-cccccccccCcccc
Q 000733 167 PENSFLALSNVGRLYRGGVNGPL--E--DVMDNVDAVEWSVK-----GKFVAVAKKNVLSILTSK-LKERLPISLSFKSW 236 (1324)
Q Consensus 167 ~aslLAVVSsDGsL~Vldl~e~l--k--~VasgVScVcWSPK-----GKQLVVGlaDGIsQyTPD-geeKkvIP~Pf~S~ 236 (1324)
..+.+|.|+.||++.|..+...- . ...-.+.+|+.+|+ -||.|+|+.-|+..|.-. +.-++.+-.
T Consensus 82 ~Gey~asCS~DGkv~I~sl~~~~~~~~~df~rpiksial~Pd~~~~~sk~fv~GG~aglvL~er~wlgnk~~v~l----- 156 (846)
T KOG2066|consen 82 EGEYVASCSDDGKVVIGSLFTDDEITQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAGLVLSERNWLGNKDSVVL----- 156 (846)
T ss_pred CCceEEEecCCCcEEEeeccCCccceeEecCCcceeEEeccchhhhhhhheeecCcceEEEehhhhhcCccceee-----
Confidence 35689999999999998775431 1 12356778999999 778999999996666322 222222211
Q ss_pred CCCCCCCCceeEEEEEEecCCeEEEEEE
Q 000733 237 VGDCDVNCSVKVDSIRWVRRDCIIIGCF 264 (1324)
Q Consensus 237 I~D~d~d~sV~V~SI~WLeNd~yLFg~v 264 (1324)
++.+| .|.+|.|-+| +++.+
T Consensus 157 ---~~~eG--~I~~i~W~g~---lIAWa 176 (846)
T KOG2066|consen 157 ---SEGEG--PIHSIKWRGN---LIAWA 176 (846)
T ss_pred ---ecCcc--ceEEEEecCc---EEEEe
Confidence 22344 5889999988 44543
No 344
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=46.81 E-value=1.6e+02 Score=36.00 Aligned_cols=105 Identities=9% Similarity=0.103 Sum_probs=69.7
Q ss_pred eeEEEEecCCCEEEEEeecCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEEEEeCCC
Q 000733 109 VDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGGVNGP 188 (1324)
Q Consensus 109 VshLAFSsDEs~LAVcaesGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl~e~ 188 (1324)
.+.+.|-.++....|.... |.++-||+-+.-.+...|. +++-..|.|++|+|+.. .++.+..|+.++|-.+...
T Consensus 110 ~~ai~~~~~~~sv~v~dka-gD~~~~di~s~~~~~~~~~----lGhvSml~dVavS~D~~-~IitaDRDEkIRvs~ypa~ 183 (390)
T KOG3914|consen 110 PTAISFIREDTSVLVADKA-GDVYSFDILSADSGRCEPI----LGHVSMLLDVAVSPDDQ-FIITADRDEKIRVSRYPAT 183 (390)
T ss_pred cceeeeeeccceEEEEeec-CCceeeeeecccccCcchh----hhhhhhhheeeecCCCC-EEEEecCCceEEEEecCcc
Confidence 6666666666666555533 4555555544333333332 24446899999999874 6888889999999888554
Q ss_pred c---ee---eecceeEEEeccCCCEEEEEecCc-eEEEc
Q 000733 189 L---ED---VMDNVDAVEWSVKGKFVAVAKKNV-LSILT 220 (1324)
Q Consensus 189 l---k~---VasgVScVcWSPKGKQLVVGlaDG-IsQyT 220 (1324)
. +. +..-|+.+|- -++..|..|+.|+ |..|.
T Consensus 184 f~IesfclGH~eFVS~isl-~~~~~LlS~sGD~tlr~Wd 221 (390)
T KOG3914|consen 184 FVIESFCLGHKEFVSTISL-TDNYLLLSGSGDKTLRLWD 221 (390)
T ss_pred cchhhhccccHhheeeeee-ccCceeeecCCCCcEEEEe
Confidence 2 11 2367777774 5566789999999 99993
No 345
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=46.50 E-value=31 Score=45.15 Aligned_cols=105 Identities=13% Similarity=0.151 Sum_probs=71.3
Q ss_pred eeEEEEecCCCEEEEEe---ecCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEEEEe
Q 000733 109 VDILSLSNDESTLAVSL---YQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGGV 185 (1324)
Q Consensus 109 VshLAFSsDEs~LAVca---esGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl 185 (1324)
.+..+..+.+-++||+. ++||.|.+|-- +|. |-.-..- | ..+..|.|-|.-. .+|.-=.-|.+-||+.
T Consensus 18 sti~SWHPsePlfAVA~fS~er~GSVtIfad----tGE--Pqr~Vt~-P-~hatSLCWHpe~~-vLa~gwe~g~~~v~~~ 88 (1416)
T KOG3617|consen 18 STISSWHPSEPLFAVASFSPERGGSVTIFAD----TGE--PQRDVTY-P-VHATSLCWHPEEF-VLAQGWEMGVSDVQKT 88 (1416)
T ss_pred ccccccCCCCceeEEEEecCCCCceEEEEec----CCC--CCccccc-c-eehhhhccChHHH-HHhhccccceeEEEec
Confidence 45567778888888887 45999999852 232 2111100 1 3355699988543 4555566788888887
Q ss_pred CCCc--ee---eecceeEEEeccCCCEEEEEecCc-eEEEccC
Q 000733 186 NGPL--ED---VMDNVDAVEWSVKGKFVAVAKKNV-LSILTSK 222 (1324)
Q Consensus 186 ~e~l--k~---VasgVScVcWSPKGKQLVVGlaDG-IsQyTPD 222 (1324)
+..- ++ +...+.-+.||++|.-|+.|.+-| +..|.-|
T Consensus 89 ~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 89 NTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred CCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 6541 22 236788899999999999999999 8888765
No 346
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=45.01 E-value=1.3e+02 Score=40.37 Aligned_cols=106 Identities=13% Similarity=0.056 Sum_probs=78.0
Q ss_pred CCCCeeEEEEecCCCEEEEEeecCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEEEE
Q 000733 105 ENENVDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGG 184 (1324)
Q Consensus 105 p~s~VshLAFSsDEs~LAVcaesGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vld 184 (1324)
+.+.|..+-++.|+.+++.+.++ -.+++|++.+.-... + .-..+++.|-+....|+ .++.+..|-++++|.
T Consensus 174 HeG~iF~i~~s~dg~~i~s~SdD-RsiRlW~i~s~~~~~--~---~~fgHsaRvw~~~~~~n---~i~t~gedctcrvW~ 244 (967)
T KOG0974|consen 174 HEGSIFSIVTSLDGRYIASVSDD-RSIRLWPIDSREVLG--C---TGFGHSARVWACCFLPN---RIITVGEDCTCRVWG 244 (967)
T ss_pred cCCceEEEEEccCCcEEEEEecC-cceeeeecccccccC--c---ccccccceeEEEEeccc---eeEEeccceEEEEEe
Confidence 34578899999999999888855 589999999764322 0 11246688999999886 799999999999997
Q ss_pred eCCC-ceee----ecceeEEEeccCCCEEEEEecCc-eEEE
Q 000733 185 VNGP-LEDV----MDNVDAVEWSVKGKFVAVAKKNV-LSIL 219 (1324)
Q Consensus 185 l~e~-lk~V----asgVScVcWSPKGKQLVVGlaDG-IsQy 219 (1324)
.... ++.+ ..++-.++-.+.--++++|..|| +..+
T Consensus 245 ~~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~ 285 (967)
T KOG0974|consen 245 VNGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLW 285 (967)
T ss_pred cccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhh
Confidence 7543 2222 24555666667777889999998 6666
No 347
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=45.00 E-value=1.5e+02 Score=39.90 Aligned_cols=101 Identities=11% Similarity=-0.023 Sum_probs=64.8
Q ss_pred EEEecCCCEEEEEeecCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEEEEeCCCcee
Q 000733 112 LSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGGVNGPLED 191 (1324)
Q Consensus 112 LAFSsDEs~LAVcaesGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl~e~lk~ 191 (1324)
+.++.++.+.+.... -+.|.+|... .+..|. ...++...+.++.|+=+. ..+|.|+.|.++++|+++..-..
T Consensus 139 ~g~s~~~~~i~~gsv-~~~iivW~~~----~dn~p~--~l~GHeG~iF~i~~s~dg-~~i~s~SdDRsiRlW~i~s~~~~ 210 (967)
T KOG0974|consen 139 IGDSAEELYIASGSV-FGEIIVWKPH----EDNKPI--RLKGHEGSIFSIVTSLDG-RYIASVSDDRSIRLWPIDSREVL 210 (967)
T ss_pred EeccCcEEEEEeccc-cccEEEEecc----ccCCcc--eecccCCceEEEEEccCC-cEEEEEecCcceeeeeccccccc
Confidence 345566666544433 3578888766 233343 233555789999997644 48999999999999999754111
Q ss_pred ------eecceeEEEeccCCCEEEEEecCc-eEEEccC
Q 000733 192 ------VMDNVDAVEWSVKGKFVAVAKKNV-LSILTSK 222 (1324)
Q Consensus 192 ------VasgVScVcWSPKGKQLVVGlaDG-IsQyTPD 222 (1324)
+..+|-..|..|. .|+++..|- +..|.-+
T Consensus 211 ~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~ 246 (967)
T KOG0974|consen 211 GCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVN 246 (967)
T ss_pred CcccccccceeEEEEeccc--eeEEeccceEEEEEecc
Confidence 1256666677777 666666766 6666444
No 348
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=44.54 E-value=61 Score=36.98 Aligned_cols=59 Identities=14% Similarity=0.151 Sum_probs=39.0
Q ss_pred ecceeEEEeccCCCEE-EEEecCc-eEEEccCcccccccccCccccCCCCCCCCceeEEEEEEecCCeEEEE
Q 000733 193 MDNVDAVEWSVKGKFV-AVAKKNV-LSILTSKLKERLPISLSFKSWVGDCDVNCSVKVDSIRWVRRDCIIIG 262 (1324)
Q Consensus 193 asgVScVcWSPKGKQL-VVGlaDG-IsQyTPDgeeKkvIP~Pf~S~I~D~d~d~sV~V~SI~WLeNd~yLFg 262 (1324)
..+++.++|.|+.+.| |+....+ |..|+.+|+..+.|+..- + -...+|.++.++.|++.
T Consensus 21 ~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~vlr~i~l~g---~--------~D~EgI~y~g~~~~vl~ 81 (248)
T PF06977_consen 21 LDELSGLTYNPDTGTLFAVQDEPGEIYELSLDGKVLRRIPLDG---F--------GDYEGITYLGNGRYVLS 81 (248)
T ss_dssp -S-EEEEEEETTTTEEEEEETTTTEEEEEETT--EEEEEE-SS------------SSEEEEEE-STTEEEEE
T ss_pred cCCccccEEcCCCCeEEEEECCCCEEEEEcCCCCEEEEEeCCC---C--------CCceeEEEECCCEEEEE
Confidence 4679999999986655 5555556 999988888777777641 1 13778999999876654
No 349
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=43.60 E-value=5.8e+02 Score=29.63 Aligned_cols=179 Identities=13% Similarity=0.089 Sum_probs=89.4
Q ss_pred EEEEEcCCceEEEEehHHHHHHhhcccCCcccccccceeeeecCCCCCeeEEEEecCCCEEEEEeecCCeEEEEEccccc
Q 000733 61 LIFAAHSSGFCVARTNDVIDAAKEMKENGTRCCVQELSVVDVPFENENVDILSLSNDESTLAVSLYQSPHIHFFSVHSLL 140 (1324)
Q Consensus 61 LvfAAgpdGLvVarTsDLr~a~ksa~en~tv~~~~dl~vi~VPLp~s~VshLAFSsDEs~LAVcaesGg~L~VYDV~SLl 140 (1324)
+++.|+.+|+.+...++.. . .. . .-.+.. +|+++.+......|++.......|++|++.+|.
T Consensus 15 ~lL~GTe~Gly~~~~~~~~-----~---~~---~-----kl~~~~--~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~ 76 (302)
T smart00036 15 WLLVGTEEGLYVLNISDQP-----G---TL---E-----KLIGRR--SVTQIWVLEENNVLLMISGKKPQLYSHPLSALV 76 (302)
T ss_pred EEEEEeCCceEEEEcccCC-----C---Ce---E-----EecCcC--ceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhh
Confidence 7888889998887433211 0 00 0 112233 699999999999999888333349999999988
Q ss_pred CC-----CC----cceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEEEEeCCC------ce------eeecceeEE
Q 000733 141 NK-----EI----KPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGGVNGP------LE------DVMDNVDAV 199 (1324)
Q Consensus 141 ng-----~t----~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl~e~------lk------~VasgVScV 199 (1324)
.+ .. +......+++-..-.-+...-+....++++...-++.++...+. .+ .+......+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~ 156 (302)
T smart00036 77 EKKEALGSARLVIRKNVLTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFV 156 (302)
T ss_pred hhhhccCCccccccccceEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhhhhhhcccccccCCCCccceE
Confidence 52 00 11111223221111222222212224444455556655543322 11 112233456
Q ss_pred EeccC---CCEEEEEecC-c--eEEEccCcccccccccCccccCCCCCCCCceeEEEEEEecCCeEEEEE
Q 000733 200 EWSVK---GKFVAVAKKN-V--LSILTSKLKERLPISLSFKSWVGDCDVNCSVKVDSIRWVRRDCIIIGC 263 (1324)
Q Consensus 200 cWSPK---GKQLVVGlaD-G--IsQyTPDgeeKkvIP~Pf~S~I~D~d~d~sV~V~SI~WLeNd~yLFg~ 263 (1324)
+|.-. +-.|++|... | +..+...+........|+. ..........+.=|++++|++.+
T Consensus 157 ~~~~~~~~~~~lcvG~~~~~~~~~~~~~~~~~~~d~sl~~~------~~~~~~~p~~i~~l~~~e~Llc~ 220 (302)
T smart00036 157 ELVSSSFERPGICIGSDKGGGDVVQFHESLVSKEDLSLPFL------SEETSLKPISVVQVPRDEFLLCY 220 (302)
T ss_pred eeecccccceEEEEEEcCCCCeEEEEeeccccccccccccc------ccccccCceEEEEECCCeEEEEE
Confidence 77422 5689999885 7 5444221122233333320 00111134555557777777665
No 350
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=41.30 E-value=3.8e+02 Score=28.35 Aligned_cols=104 Identities=13% Similarity=-0.001 Sum_probs=57.5
Q ss_pred CCCEEEEEeecCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEEEEeCCCce-ee--e
Q 000733 117 DESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGGVNGPLE-DV--M 193 (1324)
Q Consensus 117 DEs~LAVcaesGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl~e~lk-~V--a 193 (1324)
++.+|+++. .++.|..||..+.. -..+..++...... + ....+.+.+++.+|.|+.+|...+.. .. .
T Consensus 35 ~~~~v~~~~-~~~~l~~~d~~tG~-----~~W~~~~~~~~~~~---~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~ 104 (238)
T PF13360_consen 35 DGGRVYVAS-GDGNLYALDAKTGK-----VLWRFDLPGPISGA---P-VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYL 104 (238)
T ss_dssp ETTEEEEEE-TTSEEEEEETTTSE-----EEEEEECSSCGGSG---E-EEETTEEEEEETTSEEEEEETTTSCEEEEEEE
T ss_pred eCCEEEEEc-CCCEEEEEECCCCC-----EEEEeeccccccce---e-eecccccccccceeeeEecccCCcceeeeecc
Confidence 455555553 36789999876532 22333332111110 1 12345677778899999999765421 11 1
Q ss_pred -c-----ceeEEEeccCCCEEEEEecCc-eEEEccC-cccccccc
Q 000733 194 -D-----NVDAVEWSVKGKFVAVAKKNV-LSILTSK-LKERLPIS 230 (1324)
Q Consensus 194 -s-----gVScVcWSPKGKQLVVGlaDG-IsQyTPD-geeKkvIP 230 (1324)
. ..........|++++++..+| |..+.+. |+..-..+
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~ 149 (238)
T PF13360_consen 105 TSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYP 149 (238)
T ss_dssp -SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEE
T ss_pred ccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEee
Confidence 1 112222334599999999888 9999763 65543333
No 351
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=40.23 E-value=59 Score=40.51 Aligned_cols=117 Identities=23% Similarity=0.218 Sum_probs=67.9
Q ss_pred CeeEEEEecCCCEEEEEeecCCeEEEEEcccccCC-CCccee------EE-ec---CCCcceEEEEe-cCCCCCeEEEEE
Q 000733 108 NVDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNK-EIKPSF------SC-SL---NGSTYVKDIRW-RKKPENSFLALS 175 (1324)
Q Consensus 108 ~VshLAFSsDEs~LAVcaesGg~L~VYDV~SLlng-~t~P~~------si-sL---n~st~VrdLaW-NP~~aslLAVVS 175 (1324)
.|+.+++++|+.-|.+.+ ++-.|++| ..+.-.| ..-|+. .. .. | ..+|+.+-| =|. .+.+.--+
T Consensus 338 ~ITgl~Ysh~~sElLaSY-nDe~IYLF-~~~~~~G~~p~~~s~~~~~~k~vYKGHrN-~~TVKgVNFfGPr-sEyVvSGS 413 (559)
T KOG1334|consen 338 NITGLVYSHDGSELLASY-NDEDIYLF-NKSMGDGSEPDPSSPREQYVKRVYKGHRN-SRTVKGVNFFGPR-SEYVVSGS 413 (559)
T ss_pred cceeEEecCCccceeeee-cccceEEe-ccccccCCCCCCCcchhhccchhhccccc-ccccceeeeccCc-cceEEecC
Confidence 599999998888777766 34678888 4554444 111111 11 01 2 245666643 332 23333345
Q ss_pred eCCeEEEEEeCCC-ceeee----cceeEEEeccCCCEEEEEecCc-eEEEccCcccccc
Q 000733 176 NVGRLYRGGVNGP-LEDVM----DNVDAVEWSVKGKFVAVAKKNV-LSILTSKLKERLP 228 (1324)
Q Consensus 176 sDGsL~Vldl~e~-lk~Va----sgVScVcWSPKGKQLVVGlaDG-IsQyTPDgeeKkv 228 (1324)
.=|-|++|+-+.. +..++ --|-|+-=.|-==-||..+-|- |++|+|-.+++..
T Consensus 414 DCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP~~~er~~ 472 (559)
T KOG1334|consen 414 DCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTPLTAERAT 472 (559)
T ss_pred ccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccCCccceeeecCCcccccc
Confidence 5689999998754 21111 2566776555555566555555 9999996555443
No 352
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=39.92 E-value=1.6e+02 Score=38.24 Aligned_cols=75 Identities=16% Similarity=0.202 Sum_probs=42.1
Q ss_pred HHHHHHHHHHhhhccccccccccCCCCccccccCCcCCCCCcccchhhhhhhhhhhhHHHHHH-HHHHHHHhhhcccccc
Q 000733 871 QDLINQLIELERHFNSLELNKFGENDGVHGCQRRPQSRFGTSRHIQSLHSLHTTMSSQIAAAE-QLSDRLSKQMALLSIE 949 (1324)
Q Consensus 871 ~~l~~ql~~~er~fn~~e~~~~~~~~~~~~~~~~~~~~~~~s~~~qsl~s~~n~~~sq~~aae-~ls~~lskq~~~l~~~ 949 (1324)
.+|..||.+++.-...| ..+||++. -.+|.|..-.+.+..|++..+ ++.+--.+|..++.+
T Consensus 314 ~~l~~ql~~l~~~~~~l-~~~~~~~h----------------P~v~~l~~~~~~L~~~~~~l~~~~~~~p~~e~~~~~L- 375 (726)
T PRK09841 314 VNVDNQLNELTFREAEI-SQLYKKDH----------------PTYRALLEKRQTLEQERKRLNKRVSAMPSTQQEVLRL- 375 (726)
T ss_pred HHHHHHHHHHHHHHHHH-HHHhcccC----------------chHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH-
Confidence 44566777776544443 23454432 234555555566677776654 344444556666664
Q ss_pred CchhhhhhHHHHHHhc
Q 000733 950 SPVKQQNVKKELFETL 965 (1324)
Q Consensus 950 s~~~~~~v~~elfe~~ 965 (1324)
.++.+++++||+.+
T Consensus 376 --~R~~~~~~~lY~~l 389 (726)
T PRK09841 376 --SRDVEAGRAVYLQL 389 (726)
T ss_pred --HHHHHHHHHHHHHH
Confidence 23448888888763
No 353
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=39.70 E-value=69 Score=37.27 Aligned_cols=46 Identities=22% Similarity=0.399 Sum_probs=33.6
Q ss_pred EeCCeEEEEEeCCC-ceee---ecceeEEEeccCCCEEEEEecCceEEEc
Q 000733 175 SNVGRLYRGGVNGP-LEDV---MDNVDAVEWSVKGKFVAVAKKNVLSILT 220 (1324)
Q Consensus 175 SsDGsL~Vldl~e~-lk~V---asgVScVcWSPKGKQLVVGlaDGIsQyT 220 (1324)
+..|.++|+|+..+ .+.+ ...+..+.|||+|+.||....+.|....
T Consensus 20 s~~~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP~g~~~~~v~~~nly~~~ 69 (353)
T PF00930_consen 20 SFKGDYYIYDIETGEITPLTPPPPKLQDAKWSPDGKYIAFVRDNNLYLRD 69 (353)
T ss_dssp EEEEEEEEEETTTTEEEESS-EETTBSEEEE-SSSTEEEEEETTEEEEES
T ss_pred ccceeEEEEecCCCceEECcCCccccccceeecCCCeeEEEecCceEEEE
Confidence 45678999999865 2333 2468899999999999988776666663
No 354
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=38.65 E-value=4.1e+02 Score=31.13 Aligned_cols=96 Identities=16% Similarity=0.194 Sum_probs=53.5
Q ss_pred CeeEEEEecCCCEEEEEeecCCeEEEEEcccccCCCC-cceeEE---ecCCCcceEEEEecCCCCC---eEEEEEeC---
Q 000733 108 NVDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEI-KPSFSC---SLNGSTYVKDIRWRKKPEN---SFLALSNV--- 177 (1324)
Q Consensus 108 ~VshLAFSsDEs~LAVcaesGg~L~VYDV~SLlng~t-~P~~si---sLn~st~VrdLaWNP~~as---lLAVVSsD--- 177 (1324)
++..|+|.+|+.+|++ ++.|.|.+++ ..+.. .++..+ .......+..|++.|...+ .++.-+..
T Consensus 3 ~P~~~a~~pdG~l~v~--e~~G~i~~~~----~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~ 76 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA--ERSGRIWVVD----KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADED 76 (331)
T ss_dssp SEEEEEEETTSCEEEE--ETTTEEEEEE----TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TS
T ss_pred CceEEEEeCCCcEEEE--eCCceEEEEe----CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCC
Confidence 6889999999986654 4488999998 12222 344443 1233467899999997432 34443432
Q ss_pred -----CeEEEEEeCCC------ceeee----------cceeEEEeccCCCEEE
Q 000733 178 -----GRLYRGGVNGP------LEDVM----------DNVDAVEWSVKGKFVA 209 (1324)
Q Consensus 178 -----GsL~Vldl~e~------lk~Va----------sgVScVcWSPKGKQLV 209 (1324)
-.|.-+.+... .+.+. -....+.|.|+|+..+
T Consensus 77 ~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYv 129 (331)
T PF07995_consen 77 GGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYV 129 (331)
T ss_dssp SSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEE
T ss_pred CCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEE
Confidence 23444544332 11121 1345699999996443
No 355
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.19 E-value=1.9e+02 Score=39.29 Aligned_cols=52 Identities=19% Similarity=0.139 Sum_probs=35.3
Q ss_pred CeeEEEEecCCCEEEEEeecCCeEEEEEcccccCCCCcceeEEec--CCCcceEEEEecC
Q 000733 108 NVDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSL--NGSTYVKDIRWRK 165 (1324)
Q Consensus 108 ~VshLAFSsDEs~LAVcaesGg~L~VYDV~SLlng~t~P~~sisL--n~st~VrdLaWNP 165 (1324)
+|+.|||+.||.+|+.+. .+|.|.+||++. ..++..+.. .+++.|..+.|--
T Consensus 132 ~Vtsvafn~dg~~l~~G~-~~G~V~v~D~~~-----~k~l~~i~e~~ap~t~vi~v~~t~ 185 (1206)
T KOG2079|consen 132 PVTSVAFNQDGSLLLAGL-GDGHVTVWDMHR-----AKILKVITEHGAPVTGVIFVGRTS 185 (1206)
T ss_pred cceeeEecCCCceecccc-CCCcEEEEEccC-----CcceeeeeecCCccceEEEEEEeC
Confidence 499999999999887766 457899999874 122222222 3346666777744
No 356
>PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins.
Probab=37.92 E-value=36 Score=34.97 Aligned_cols=49 Identities=29% Similarity=0.403 Sum_probs=30.3
Q ss_pred cccCCHHHHHHHH-----------HHHHHhhhccCCccccchhhhhccHHHHHHHHhhHH
Q 000733 752 KQSGNIKEMTKEL-----------DMLLQSIEETGGFRDACTVFQRQKVEELEEGIGSLS 800 (1324)
Q Consensus 752 kq~~ni~em~kel-----------d~ll~~ie~~ggf~dac~~~~~~~v~~~e~~~~~l~ 800 (1324)
+--||||||+||| |.|++-|....-=.+.=..+.+.=+++||.|-=+.-
T Consensus 47 ~~rGnlKe~e~~lgiSYPTvR~rLd~ii~~lg~~~~~~~~~~~~~~~IL~~L~~GeIs~e 106 (113)
T PF09862_consen 47 KNRGNLKEMEKELGISYPTVRNRLDKIIEKLGYEEDEEEEEEDERKEILDKLEKGEISVE 106 (113)
T ss_pred HhcCCHHHHHHHHCCCcHHHHHHHHHHHHHhCCCCCcccccchhHHHHHHHHHcCCCCHH
Confidence 3449999999995 788887766222233334455555667776644433
No 357
>PRK14064 exodeoxyribonuclease VII small subunit; Provisional
Probab=36.25 E-value=1.3e+02 Score=28.88 Aligned_cols=61 Identities=13% Similarity=0.330 Sum_probs=47.4
Q ss_pred cccCCHHHHHHHHHHHHHhhhccCCccccchhhhhccHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHHh
Q 000733 752 KQSGNIKEMTKELDMLLQSIEETGGFRDACTVFQRQKVEELEEGIGSLSEKCGMWRSIMDERLQEIQNLFDK 823 (1324)
Q Consensus 752 kq~~ni~em~keld~ll~~ie~~ggf~dac~~~~~~~v~~~e~~~~~l~~~c~~~~~~~~~~~~~~~~~~~k 823 (1324)
++-.+..|.-++|+.++.-||.+ .+-+..++..+|+|+. |+..|+- ++++--++|+.|+++
T Consensus 3 ~k~~sfEe~l~~LE~IV~~LE~~-------~l~Leesl~~ye~G~~-L~k~c~~---~L~~ae~kv~~l~~~ 63 (75)
T PRK14064 3 TKKKTFEEAIAELETIVEALENG-------SASLEDSLDMYQKGIE-LTKLCQD---KLQSAEKRMAKVVTD 63 (75)
T ss_pred CCcCCHHHHHHHHHHHHHHHHCC-------CCCHHHHHHHHHHHHH-HHHHHHH---HHHHHHHHHHHHHHc
Confidence 44457899999999999999976 4788899999999995 7888875 455555666666543
No 358
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=35.45 E-value=5.3e+02 Score=34.00 Aligned_cols=100 Identities=11% Similarity=0.027 Sum_probs=61.2
Q ss_pred CEEEEEeecCCeEEEEEcccccCCCC----cceeEEec--CCCcceEEEEecCCCCCeEEEEEeCCeEEEEEeCCC----
Q 000733 119 STLAVSLYQSPHIHFFSVHSLLNKEI----KPSFSCSL--NGSTYVKDIRWRKKPENSFLALSNVGRLYRGGVNGP---- 188 (1324)
Q Consensus 119 s~LAVcaesGg~L~VYDV~SLlng~t----~P~~sisL--n~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl~e~---- 188 (1324)
..|.|.......++.-+++.+..... .++..... ...-.|..+..||+.. .+|++...| |.|+.+-.+
T Consensus 42 ~~L~vWd~~e~~l~~~nlr~~~~~~~~~~~~~~q~L~~~~~~~f~v~~i~~n~~g~-~lal~G~~~-v~V~~LP~r~g~~ 119 (717)
T PF10168_consen 42 GDLFVWDSSECCLLTVNLRSLESDAEGPAKSSYQKLLPSNPPLFEVHQISLNPTGS-LLALVGPRG-VVVLELPRRWGKN 119 (717)
T ss_pred CEEEEEECCCCEEEEEeeccccccccCccccCcceeecCCCCceeEEEEEECCCCC-EEEEEcCCc-EEEEEeccccCcc
Confidence 45666663333444444555543322 23333221 2346799999999765 577777655 666666211
Q ss_pred --c----e--ee--------------ecceeEEEeccC---CCEEEEEecCc-eEEEc
Q 000733 189 --L----E--DV--------------MDNVDAVEWSVK---GKFVAVAKKNV-LSILT 220 (1324)
Q Consensus 189 --l----k--~V--------------asgVScVcWSPK---GKQLVVGlaDG-IsQyT 220 (1324)
. . .+ ...|..|.|.|. |..|++-+.|+ |..|.
T Consensus 120 ~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~ 177 (717)
T PF10168_consen 120 GEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYD 177 (717)
T ss_pred ccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEe
Confidence 0 1 11 137789999998 58999999999 99993
No 359
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=35.33 E-value=1.2e+02 Score=31.18 Aligned_cols=69 Identities=20% Similarity=0.234 Sum_probs=48.8
Q ss_pred chhcccCCHHHHHHHHHHHHHh-----hhccCCccccchhhhhccHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHH
Q 000733 749 NLSKQSGNIKEMTKELDMLLQS-----IEETGGFRDACTVFQRQKVEELEEGIGSLSEKCGMWRSIMDERLQEIQNLFD 822 (1324)
Q Consensus 749 ~lskq~~ni~em~keld~ll~~-----ie~~ggf~dac~~~~~~~v~~~e~~~~~l~~~c~~~~~~~~~~~~~~~~~~~ 822 (1324)
-|+|==+.|.|+-|+|+.+... +... ....-.++-+.+++.++++|..-+.-.|..|.|...+|+++..
T Consensus 34 ~l~kL~~~i~eld~~i~~~v~~~~~~LL~q~-----~~~~~~~~~l~~v~~~v~~L~~s~~RL~~eV~~Py~~~~~~~~ 107 (132)
T PF10392_consen 34 PLKKLNFDIQELDKRIRSQVTSNHEDLLSQA-----SSIEELESVLQAVRSSVESLQSSYERLRSEVIEPYEKIQKLTS 107 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCHHHHHHHH-----HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3444446688888888765321 1111 1122345589999999999999999999999999999988743
No 360
>TIGR01280 xseB exodeoxyribonuclease VII, small subunit. This protein is the small subunit for exodeoxyribonuclease VII. Exodeoxyribonuclease VII is made of a complex of four small subunits to one large subunit. The complex degrades single-stranded DNA into large acid-insoluble oligonucleotides. These nucleotides are then degraded further into acid-soluble oligonucleotides.
Probab=34.53 E-value=1.6e+02 Score=27.58 Aligned_cols=57 Identities=19% Similarity=0.446 Sum_probs=45.0
Q ss_pred CHHHHHHHHHHHHHhhhccCCccccchhhhhccHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHHh
Q 000733 756 NIKEMTKELDMLLQSIEETGGFRDACTVFQRQKVEELEEGIGSLSEKCGMWRSIMDERLQEIQNLFDK 823 (1324)
Q Consensus 756 ni~em~keld~ll~~ie~~ggf~dac~~~~~~~v~~~e~~~~~l~~~c~~~~~~~~~~~~~~~~~~~k 823 (1324)
+..|+-++|+.+++.+|.+. +.+.-++..+|+|+. |+..|+ .++++--++|+.|.++
T Consensus 2 sfEe~l~~Le~Iv~~LE~~~-------l~Leesl~lyeeG~~-L~k~c~---~~L~~ae~kv~~l~~~ 58 (67)
T TIGR01280 2 SFEEALSELEQIVQKLESGD-------LALEEALNLFERGMA-LARRCE---KKLAQAEQRVRKLLKE 58 (67)
T ss_pred CHHHHHHHHHHHHHHHHCCC-------CCHHHHHHHHHHHHH-HHHHHH---HHHHHHHHHHHHHHhc
Confidence 35688899999999999874 778889999999985 778886 4666666677766654
No 361
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=33.00 E-value=3.3e+02 Score=36.27 Aligned_cols=126 Identities=15% Similarity=0.033 Sum_probs=71.4
Q ss_pred CCcceEee-CCcceEEEEEcCCceEEEEehHHHHHHhhcccCCcccccccceeeeecCCCCCeeEEEEe--cCCCEEEEE
Q 000733 48 PSLPLAVS-QLSHQLIFAAHSSGFCVARTNDVIDAAKEMKENGTRCCVQELSVVDVPFENENVDILSLS--NDESTLAVS 124 (1324)
Q Consensus 48 ~sSLLAVS-N~K~GLvfAAgpdGLvVarTsDLr~a~ksa~en~tv~~~~dl~vi~VPLp~s~VshLAFS--sDEs~LAVc 124 (1324)
+.|.=|+- + -.||++.|..+-+.|+..-.+.-...-+.....+ ..+...|.+ ..+=-+| +-...||++
T Consensus 15 ~sN~~A~Dw~-~~GLiAygshslV~VVDs~s~q~iqsie~h~s~V-----~~VrWap~~---~p~~llS~~~~~lliAsa 85 (1062)
T KOG1912|consen 15 RSNRNAADWS-PSGLIAYGSHSLVSVVDSRSLQLIQSIELHQSAV-----TSVRWAPAP---SPRDLLSPSSSQLLIASA 85 (1062)
T ss_pred cccccccccC-ccceEEEecCceEEEEehhhhhhhhccccCccce-----eEEEeccCC---CchhccCccccceeEEec
Confidence 34443442 3 5899999988887776332222111111111111 123344544 3333344 245555665
Q ss_pred eecCCeEEEEEcccccCC-CCcceeEEecCCCcceEEEEecCCCC---CeEEEEEeCCeEEEEEeCCCce
Q 000733 125 LYQSPHIHFFSVHSLLNK-EIKPSFSCSLNGSTYVKDIRWRKKPE---NSFLALSNVGRLYRGGVNGPLE 190 (1324)
Q Consensus 125 aesGg~L~VYDV~SLlng-~t~P~~sisLn~st~VrdLaWNP~~a---slLAVVSsDGsL~Vldl~e~lk 190 (1324)
..+ |.|.+||+...... ..+ .+...+.|+.|=|... +.++++..-..|..||...+.+
T Consensus 86 D~~-GrIil~d~~~~s~~~~l~-------~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k 147 (1062)
T KOG1912|consen 86 DIS-GRIILVDFVLASVINWLS-------HSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEK 147 (1062)
T ss_pred ccc-CcEEEEEehhhhhhhhhc-------CCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCce
Confidence 544 68999998765431 111 1235789999988643 5788999899999998765533
No 362
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=32.74 E-value=5.7e+02 Score=31.05 Aligned_cols=101 Identities=14% Similarity=0.147 Sum_probs=63.9
Q ss_pred eeEEEEecCCCEEEEEeec-CCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEEEEeCC
Q 000733 109 VDILSLSNDESTLAVSLYQ-SPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGGVNG 187 (1324)
Q Consensus 109 VshLAFSsDEs~LAVcaes-Gg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl~e 187 (1324)
....+||.||.+|.|+... ...|.|.|+.+ .+-+.++.+.+ +. +.. |..+..|..+-.||+|....+++
T Consensus 97 ~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~-----~kvv~ei~~PG--C~--~iy-P~~~~~F~~lC~DGsl~~v~Ld~ 166 (342)
T PF06433_consen 97 KNMFALSADGKFLYVQNFTPATSVTVVDLAA-----KKVVGEIDTPG--CW--LIY-PSGNRGFSMLCGDGSLLTVTLDA 166 (342)
T ss_dssp GGGEEE-TTSSEEEEEEESSSEEEEEEETTT-----TEEEEEEEGTS--EE--EEE-EEETTEEEEEETTSCEEEEEETS
T ss_pred ccceEEccCCcEEEEEccCCCCeEEEEECCC-----CceeeeecCCC--EE--EEE-ecCCCceEEEecCCceEEEEECC
Confidence 4567999999999999854 67899999775 33355677753 22 222 33344688777899999988874
Q ss_pred Cceee------e----c-ceeEEEeccCCCEEEEEecCc-eEEE
Q 000733 188 PLEDV------M----D-NVDAVEWSVKGKFVAVAKKNV-LSIL 219 (1324)
Q Consensus 188 ~lk~V------a----s-gVScVcWSPKGKQLVVGlaDG-IsQy 219 (1324)
..+.. . + -+.--.|+.+|-+++.-+-+| |...
T Consensus 167 ~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~ 210 (342)
T PF06433_consen 167 DGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSA 210 (342)
T ss_dssp TSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEE
T ss_pred CCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEE
Confidence 32221 1 1 122345667777777777778 6665
No 363
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=32.66 E-value=2.5e+02 Score=33.34 Aligned_cols=63 Identities=13% Similarity=0.075 Sum_probs=46.1
Q ss_pred ceEEEEecCCCCCeEEEEEeCCeEEEEEeCCCc-ee----e---ecceeEEEeccCCCEEEEEecCc-eEEEc
Q 000733 157 YVKDIRWRKKPENSFLALSNVGRLYRGGVNGPL-ED----V---MDNVDAVEWSVKGKFVAVAKKNV-LSILT 220 (1324)
Q Consensus 157 ~VrdLaWNP~~aslLAVVSsDGsL~Vldl~e~l-k~----V---asgVScVcWSPKGKQLVVGlaDG-IsQyT 220 (1324)
.+..+..+|+.. ..++|.....++.+.+.... .+ + .+.--|++||-..-|.|+|.+|| +.+|.
T Consensus 160 ~~ns~~~snd~~-~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~D 231 (344)
T KOG4532|consen 160 TQNSLHYSNDPS-WGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYD 231 (344)
T ss_pred ceeeeEEcCCCc-eEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEE
Confidence 356667777443 67777777788888776431 11 1 24556999999999999999999 99994
No 364
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=32.62 E-value=1.7e+02 Score=37.87 Aligned_cols=86 Identities=12% Similarity=0.272 Sum_probs=54.1
Q ss_pred CeEEEEEeCCe-EEEEEeCCCcee----e--ecceeEEEec--cCCCEE-EEEecCceEEEcc---C-------cccccc
Q 000733 169 NSFLALSNVGR-LYRGGVNGPLED----V--MDNVDAVEWS--VKGKFV-AVAKKNVLSILTS---K-------LKERLP 228 (1324)
Q Consensus 169 slLAVVSsDGs-L~Vldl~e~lk~----V--asgVScVcWS--PKGKQL-VVGlaDGIsQyTP---D-------geeKkv 228 (1324)
.-+|+|.++|+ |.|||...+... . .+.|..++|. |+|..| ++|..+-|..|+. | ....+.
T Consensus 41 ~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~ 120 (631)
T PF12234_consen 41 KKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRK 120 (631)
T ss_pred CcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEE
Confidence 46888877665 789999866321 2 3678899997 666654 7777777777753 1 111111
Q ss_pred cccCccccCCCCCCCCceeEEEEEEecCCeEEEEE
Q 000733 229 ISLSFKSWVGDCDVNCSVKVDSIRWVRRDCIIIGC 263 (1324)
Q Consensus 229 IP~Pf~S~I~D~d~d~sV~V~SI~WLeNd~yLFg~ 263 (1324)
|. |.+ -.+..|-+..|+.+..+++|.
T Consensus 121 i~------i~~---~T~h~Igds~Wl~~G~LvV~s 146 (631)
T PF12234_consen 121 ID------ISS---HTPHPIGDSIWLKDGTLVVGS 146 (631)
T ss_pred EE------eec---CCCCCccceeEecCCeEEEEe
Confidence 11 111 123467889999998776665
No 365
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.10 E-value=66 Score=38.09 Aligned_cols=59 Identities=14% Similarity=0.171 Sum_probs=45.3
Q ss_pred ecceeEEEeccCCCEEEEEecCc--eEEEccCcccccccccCccccCCCCCCCCceeEEEEEEecCCeEEEE
Q 000733 193 MDNVDAVEWSVKGKFVAVAKKNV--LSILTSKLKERLPISLSFKSWVGDCDVNCSVKVDSIRWVRRDCIIIG 262 (1324)
Q Consensus 193 asgVScVcWSPKGKQLVVGlaDG--IsQyTPDgeeKkvIP~Pf~S~I~D~d~d~sV~V~SI~WLeNd~yLFg 262 (1324)
..+|+++.|+|+-..|.+-.+.+ |.-++-+|+..++||.++ + . ....|.|++++.|+++
T Consensus 85 ~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g---~--~------DpE~Ieyig~n~fvi~ 145 (316)
T COG3204 85 TANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTG---F--S------DPETIEYIGGNQFVIV 145 (316)
T ss_pred cccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccc---c--C------ChhHeEEecCCEEEEE
Confidence 46799999999999998777777 777777899999999884 1 1 2456889999865543
No 366
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=32.01 E-value=8.3e+02 Score=34.69 Aligned_cols=69 Identities=23% Similarity=0.271 Sum_probs=43.6
Q ss_pred eEeeCCcceEEEEEcCCceEEEEehHHHHHHhhccc--CCcccccccceeeeecCCCCCeeEEEEec-CCCEEEEEe
Q 000733 52 LAVSQLSHQLIFAAHSSGFCVARTNDVIDAAKEMKE--NGTRCCVQELSVVDVPFENENVDILSLSN-DESTLAVSL 125 (1324)
Q Consensus 52 LAVSN~K~GLvfAAgpdGLvVarTsDLr~a~ksa~e--n~tv~~~~dl~vi~VPLp~s~VshLAFSs-DEs~LAVca 125 (1324)
+||. |.|+++.|.++-+.++.+.-++..+-...+ .....|..-+.+..|.|. =++.||+++ |++ |.|..
T Consensus 480 Ia~d--k~g~lYfaD~t~IR~iD~~giIstlig~~~~~~~p~~C~~~~kl~~~~le--WPT~LaV~Pmdns-l~Vld 551 (1899)
T KOG4659|consen 480 IAFD--KMGNLYFADGTRIRVIDTTGIISTLIGTTPDQHPPRTCAQITKLVDLQLE--WPTSLAVDPMDNS-LLVLD 551 (1899)
T ss_pred eeEc--cCCcEEEecccEEEEeccCceEEEeccCCCCccCccccccccchhheeee--cccceeecCCCCe-EEEee
Confidence 5565 489999998888888766666544322211 113345555555666666 778999998 555 55545
No 367
>PRK02888 nitrous-oxide reductase; Validated
Probab=31.89 E-value=4.7e+02 Score=34.11 Aligned_cols=117 Identities=7% Similarity=-0.046 Sum_probs=64.9
Q ss_pred eeecCCCCCeeEEEEecCCCEEEEEe---ecCC-----------eEEEEEccc---cc-CC-------------------
Q 000733 100 VDVPFENENVDILSLSNDESTLAVSL---YQSP-----------HIHFFSVHS---LL-NK------------------- 142 (1324)
Q Consensus 100 i~VPLp~s~VshLAFSsDEs~LAVca---esGg-----------~L~VYDV~S---Ll-ng------------------- 142 (1324)
+.|.+. .++..++++.|+.++.++. |.|. .+.+|+... +. +|
T Consensus 229 ~qV~Vd-gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~V~gn~V~VID~~t~~ 307 (635)
T PRK02888 229 WQVMVD-GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKTIGGSKVPVVDGRKAA 307 (635)
T ss_pred EEEEeC-CCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEEEECCCEEEEEECCccc
Confidence 556665 5789999999999998885 3333 233333321 11 01
Q ss_pred --CCcceeEEecCCCcceEEEEecCCCCCeEEEEE--eCCeEEEEEeCCCce-----------ee-----ecceeEEEec
Q 000733 143 --EIKPSFSCSLNGSTYVKDIRWRKKPENSFLALS--NVGRLYRGGVNGPLE-----------DV-----MDNVDAVEWS 202 (1324)
Q Consensus 143 --~t~P~~sisLn~st~VrdLaWNP~~aslLAVVS--sDGsL~Vldl~e~lk-----------~V-----asgVScVcWS 202 (1324)
...-.++|.++ ...--+..+|+.. +++++ .++++.|.|+..-.. ++ .-+..-.+|.
T Consensus 308 ~~~~~v~~yIPVG--KsPHGV~vSPDGk--ylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFD 383 (635)
T PRK02888 308 NAGSALTRYVPVP--KNPHGVNTSPDGK--YFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFD 383 (635)
T ss_pred cCCcceEEEEECC--CCccceEECCCCC--EEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCcceEEEC
Confidence 11223333332 1233344555443 33333 366778888754211 11 1355567788
Q ss_pred cCCCEEEEEecCc-eEEEcc
Q 000733 203 VKGKFVAVAKKNV-LSILTS 221 (1324)
Q Consensus 203 PKGKQLVVGlaDG-IsQyTP 221 (1324)
+||+-.+.-.-|. |..|..
T Consensus 384 g~G~aytslf~dsqv~kwn~ 403 (635)
T PRK02888 384 GRGNAYTTLFLDSQIVKWNI 403 (635)
T ss_pred CCCCEEEeEeecceeEEEeh
Confidence 8888777777777 888853
No 368
>PRK14069 exodeoxyribonuclease VII small subunit; Provisional
Probab=31.83 E-value=1.4e+02 Score=30.02 Aligned_cols=56 Identities=18% Similarity=0.351 Sum_probs=44.2
Q ss_pred CCHHHHHHHHHHHHHhhhccCCccccchhhhhccHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHH
Q 000733 755 GNIKEMTKELDMLLQSIEETGGFRDACTVFQRQKVEELEEGIGSLSEKCGMWRSIMDERLQEIQNLF 821 (1324)
Q Consensus 755 ~ni~em~keld~ll~~ie~~ggf~dac~~~~~~~v~~~e~~~~~l~~~c~~~~~~~~~~~~~~~~~~ 821 (1324)
-+..|+-++|+.+++.||.+ .+.+.-++..+|+||. |+..|+.+ +++--.+|+-|+
T Consensus 8 ~sFEeal~~LEeIV~~LEsg-------dl~LEesl~lyeeGv~-L~k~C~~~---L~~AE~kV~~L~ 63 (95)
T PRK14069 8 ISFEDALRELEQIAEKLERQ-------DFSLEESLKAYERGME-LKKICSGI---LDDAEGKIEALT 63 (95)
T ss_pred CCHHHHHHHHHHHHHHHHCC-------CCCHHHHHHHHHHHHH-HHHHHHHH---HHHHHHHHHHHH
Confidence 46899999999999999976 4788899999999995 78899765 444444555554
No 369
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=30.56 E-value=4.4e+02 Score=31.15 Aligned_cols=74 Identities=14% Similarity=0.079 Sum_probs=51.0
Q ss_pred EEEEecCCCCCeEEEEEeCCeEEEEEeCC-Cc----e--ee-e----cceeEEEeccCCCEEEEEecCc--eEEEccCcc
Q 000733 159 KDIRWRKKPENSFLALSNVGRLYRGGVNG-PL----E--DV-M----DNVDAVEWSVKGKFVAVAKKNV--LSILTSKLK 224 (1324)
Q Consensus 159 rdLaWNP~~aslLAVVSsDGsL~Vldl~e-~l----k--~V-a----sgVScVcWSPKGKQLVVGlaDG--IsQyTPDge 224 (1324)
+-|+|+|+-..++.+=+..+.|+.+++.. .. + .+ . ....-+|-=.+|..-+++..+| |..|.|+++
T Consensus 166 NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pdG~ 245 (307)
T COG3386 166 NGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPDGK 245 (307)
T ss_pred CceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCCCc
Confidence 45899998776666667778888887752 11 1 11 1 2333344447888776676765 999999998
Q ss_pred cccccccC
Q 000733 225 ERLPISLS 232 (1324)
Q Consensus 225 eKkvIP~P 232 (1324)
...+|..|
T Consensus 246 l~~~i~lP 253 (307)
T COG3386 246 LLGEIKLP 253 (307)
T ss_pred EEEEEECC
Confidence 88888777
No 370
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=30.29 E-value=69 Score=41.01 Aligned_cols=62 Identities=21% Similarity=0.392 Sum_probs=42.0
Q ss_pred CCccccchhhhhcc-----------HHHHHHHHhhHHHHhhhhHHHHHH--------HHHHHHHHHHhHHHHHHHHHhhh
Q 000733 775 GGFRDACTVFQRQK-----------VEELEEGIGSLSEKCGMWRSIMDE--------RLQEIQNLFDKTVQVLARKIYTE 835 (1324)
Q Consensus 775 ggf~dac~~~~~~~-----------v~~~e~~~~~l~~~c~~~~~~~~~--------~~~~~~~~~~k~~~v~a~~~~~~ 835 (1324)
|||||. ++...++ =..+.++++.|.+.+.-|+..+++ .+.+.++.+++-...|||++|.+
T Consensus 217 ~~f~~~-tRia~~~p~~~~di~~~n~~~~~~~l~~~~~~l~~~~~~l~~~d~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 295 (735)
T PRK14806 217 GGFRDF-TRIAASDPVMWHDIFLANKEAVLRALDHFRDDLDALRAAIEAGDGHALLGVFTRARAAREHFSKMLARRAYVE 295 (735)
T ss_pred cchhcc-cccccCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 679997 4444443 345566777788777888887763 33444555555567999999988
Q ss_pred hh
Q 000733 836 GI 837 (1324)
Q Consensus 836 g~ 837 (1324)
.|
T Consensus 296 ~~ 297 (735)
T PRK14806 296 AM 297 (735)
T ss_pred cc
Confidence 66
No 371
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=30.19 E-value=3.7e+02 Score=36.56 Aligned_cols=51 Identities=14% Similarity=0.053 Sum_probs=33.7
Q ss_pred EeCCeEEEEEeCCCc------eeeecceeEEEeccCCC------EEEEEecCc---eEEEccCccc
Q 000733 175 SNVGRLYRGGVNGPL------EDVMDNVDAVEWSVKGK------FVAVAKKNV---LSILTSKLKE 225 (1324)
Q Consensus 175 SsDGsL~Vldl~e~l------k~VasgVScVcWSPKGK------QLVVGlaDG---IsQyTPDgee 225 (1324)
..++-|+-..+.... +.....|.|++.||-|. ++|+|+=+. +..+.||+..
T Consensus 506 ~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~ 571 (1096)
T KOG1897|consen 506 GGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLIL 571 (1096)
T ss_pred cCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcce
Confidence 444556655665432 22347899999998753 899998776 5566687643
No 372
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=29.87 E-value=2.6e+02 Score=32.98 Aligned_cols=104 Identities=17% Similarity=0.178 Sum_probs=55.4
Q ss_pred CCeeEEEEecCCCEEEEEeecCCeEEEEEcc-ccc--CCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEEE
Q 000733 107 ENVDILSLSNDESTLAVSLYQSPHIHFFSVH-SLL--NKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRG 183 (1324)
Q Consensus 107 s~VshLAFSsDEs~LAVcaesGg~L~VYDV~-SLl--ng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vl 183 (1324)
.+|..++|++|+....+.. ||.|++=+.. ..- ++...|. ..+ +-.+.+++|.|. . .+-++.-.|.|++=
T Consensus 187 ~riq~~gf~~~~~lw~~~~--Gg~~~~s~~~~~~~~w~~~~~~~---~~~-~~~~ld~a~~~~-~-~~wa~gg~G~l~~S 258 (302)
T PF14870_consen 187 RRIQSMGFSPDGNLWMLAR--GGQIQFSDDPDDGETWSEPIIPI---KTN-GYGILDLAYRPP-N-EIWAVGGSGTLLVS 258 (302)
T ss_dssp S-EEEEEE-TTS-EEEEET--TTEEEEEE-TTEEEEE---B-TT---SS---S-EEEEEESSS-S--EEEEESTT-EEEE
T ss_pred ceehhceecCCCCEEEEeC--CcEEEEccCCCCccccccccCCc---ccC-ceeeEEEEecCC-C-CEEEEeCCccEEEe
Confidence 3799999999988666654 8888887611 111 1111221 122 355899999985 3 35557778888765
Q ss_pred EeCCC-------ceeeecceeEEEeccCCCEEEEEecCc-eEEE
Q 000733 184 GVNGP-------LEDVMDNVDAVEWSVKGKFVAVAKKNV-LSIL 219 (1324)
Q Consensus 184 dl~e~-------lk~VasgVScVcWSPKGKQLVVGlaDG-IsQy 219 (1324)
.-+.. ...+.++...|-+-.+.|-.|+ ..+| |..|
T Consensus 259 ~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~l-G~~G~ll~~ 301 (302)
T PF14870_consen 259 TDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVL-GQDGVLLRY 301 (302)
T ss_dssp SSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE--STTEEEEE
T ss_pred CCCCccceECccccCCCCceEEEEEcCCCceEEE-CCCcEEEEe
Confidence 43322 1123567778888776665554 4677 6555
No 373
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=29.49 E-value=2.2e+02 Score=36.24 Aligned_cols=99 Identities=12% Similarity=0.113 Sum_probs=64.1
Q ss_pred CCEEEEEeecCCeEEEEEcccccC-CCCcceeEEecCCCcceEEEEecCC-------------------CCCeEEEEEeC
Q 000733 118 ESTLAVSLYQSPHIHFFSVHSLLN-KEIKPSFSCSLNGSTYVKDIRWRKK-------------------PENSFLALSNV 177 (1324)
Q Consensus 118 Es~LAVcaesGg~L~VYDV~SLln-g~t~P~~sisLn~st~VrdLaWNP~-------------------~aslLAVVSsD 177 (1324)
..++|.. ..+|.|++|++..-.. ....|... +. .+-.+++|+=. ...++++-+..
T Consensus 5 ~~~~A~~-~~~g~l~iw~t~~~~~~~e~~p~~~--~s--~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~ 79 (541)
T KOG4547|consen 5 LDYFALS-TGDGRLRIWDTAKNQLQQEFAPIAS--LS--GTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQ 79 (541)
T ss_pred hheEeec-CCCCeEEEEEccCceeeeeeccchh--cc--CcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCC
Confidence 3444443 3468999999874321 13444332 22 23456677521 11255666789
Q ss_pred CeEEEEEeCCC-ce--e----eecceeEEEeccCCCEEEEEecCc-eEEEcc
Q 000733 178 GRLYRGGVNGP-LE--D----VMDNVDAVEWSVKGKFVAVAKKNV-LSILTS 221 (1324)
Q Consensus 178 GsL~Vldl~e~-lk--~----VasgVScVcWSPKGKQLVVGlaDG-IsQyTP 221 (1324)
|.+.++++.++ ++ . +..+|.|+-|+.+=--|-.+.+|+ +.+|.+
T Consensus 80 g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~ 131 (541)
T KOG4547|consen 80 GSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILE 131 (541)
T ss_pred ccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEec
Confidence 99999998755 22 1 137999999999998999999999 888854
No 374
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=27.66 E-value=48 Score=42.44 Aligned_cols=89 Identities=9% Similarity=0.035 Sum_probs=54.4
Q ss_pred EEEec-CCCEEEEEeecCCeEEEEEcccccCCCCcceeEEecCC---CcceEEEEecCCCCCeEEEEEeC-CeEEEEEeC
Q 000733 112 LSLSN-DESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNG---STYVKDIRWRKKPENSFLALSNV-GRLYRGGVN 186 (1324)
Q Consensus 112 LAFSs-DEs~LAVcaesGg~L~VYDV~SLlng~t~P~~sisLn~---st~VrdLaWNP~~aslLAVVSsD-GsL~Vldl~ 186 (1324)
+.+.+ ...+++... .+.|++||. ..+ -.+|+..+.-+. ...+.+|+|+|....++|+|..| ++|+.+++-
T Consensus 201 ~tVdp~~~nY~cs~~--dg~iAiwD~--~rn-ienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 201 ITVDPFSPNYFCSNS--DGDIAIWDT--YRN-IENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred ceecCCCCCceeccc--cCceeeccc--hhh-hccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 33444 556665555 889999994 221 122333222211 13589999999998899999765 667887763
Q ss_pred CC-------ce--ee------------ecceeEEEeccCC
Q 000733 187 GP-------LE--DV------------MDNVDAVEWSVKG 205 (1324)
Q Consensus 187 e~-------lk--~V------------asgVScVcWSPKG 205 (1324)
.. .. +. .++|.|+.|+++-
T Consensus 276 ~v~t~~s~nn~~~~~~~s~~~~q~~~~~s~I~~f~wH~~s 315 (783)
T KOG1008|consen 276 VVGTEGSANNSVFVNYESKYPVQPNSQCSGIDFFTWHTAS 315 (783)
T ss_pred ccCCcccccccceeeecccccccccccccceeecCcCcCC
Confidence 11 00 10 1578888888775
No 375
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=27.60 E-value=2.3e+02 Score=38.13 Aligned_cols=55 Identities=20% Similarity=0.073 Sum_probs=37.4
Q ss_pred CeEEEEEe-CCeEEEEEeCCC-ceee--e--cceeEEEeccCCCEEEE--EecC--c-eEEEccCc
Q 000733 169 NSFLALSN-VGRLYRGGVNGP-LEDV--M--DNVDAVEWSVKGKFVAV--AKKN--V-LSILTSKL 223 (1324)
Q Consensus 169 slLAVVSs-DGsL~Vldl~e~-lk~V--a--sgVScVcWSPKGKQLVV--GlaD--G-IsQyTPDg 223 (1324)
.-+|.|.. .|.|.+.|+.+. .+.+ . ..|-+=+|||+||+||. +... | =.+|--++
T Consensus 319 tkiAfv~~~~~~L~~~D~dG~n~~~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L 384 (912)
T TIGR02171 319 AKLAFRNDVTGNLAYIDYTKGASRAVEIEDTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNL 384 (912)
T ss_pred eeEEEEEcCCCeEEEEecCCCCceEEEecCCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEeh
Confidence 36777764 479999999753 3433 2 56677899999999987 5555 5 44554343
No 376
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=27.04 E-value=1.1e+02 Score=37.75 Aligned_cols=76 Identities=11% Similarity=0.045 Sum_probs=56.2
Q ss_pred CCCeeEEEEecCCCEEEEEeecCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEEEEe
Q 000733 106 NENVDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGGV 185 (1324)
Q Consensus 106 ~s~VshLAFSsDEs~LAVcaesGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl 185 (1324)
...|.-||||+.+.=|++.+.-|..|.++|+.+-.. ... +.. ...+-...|.-+..+.+-.-..+|.++|+|+
T Consensus 193 g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~--vss---y~a--~~~~wSC~wDlde~h~IYaGl~nG~VlvyD~ 265 (463)
T KOG1645|consen 193 GSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCV--VSS---YIA--YNQIWSCCWDLDERHVIYAGLQNGMVLVYDM 265 (463)
T ss_pred chhhhhhccCccccceeeeeccCceEEEEeccccee--eeh---eec--cCCceeeeeccCCcceeEEeccCceEEEEEc
Confidence 347889999998886666665588999999986432 111 111 2467788898888887778899999999999
Q ss_pred CCC
Q 000733 186 NGP 188 (1324)
Q Consensus 186 ~e~ 188 (1324)
...
T Consensus 266 R~~ 268 (463)
T KOG1645|consen 266 RQP 268 (463)
T ss_pred cCC
Confidence 643
No 377
>PRK14066 exodeoxyribonuclease VII small subunit; Provisional
Probab=26.46 E-value=2.2e+02 Score=27.47 Aligned_cols=55 Identities=15% Similarity=0.268 Sum_probs=42.8
Q ss_pred CHHHHHHHHHHHHHhhhccCCccccchhhhhccHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHH
Q 000733 756 NIKEMTKELDMLLQSIEETGGFRDACTVFQRQKVEELEEGIGSLSEKCGMWRSIMDERLQEIQNLF 821 (1324)
Q Consensus 756 ni~em~keld~ll~~ie~~ggf~dac~~~~~~~v~~~e~~~~~l~~~c~~~~~~~~~~~~~~~~~~ 821 (1324)
+..++-++|+.+++-+|.+ .+.+..++..+|+|+. |+..|+.+-.-. -++|+-|+
T Consensus 5 ~fEeal~~LE~IV~~LE~g-------~l~Leesl~lyeeG~~-L~k~C~~~L~~a---e~kv~~l~ 59 (75)
T PRK14066 5 KFETALKKLEEVVKKLEGG-------ELSLDDSLKAFEEGVK-HAAFCSKKLDEA---ERRVEVLL 59 (75)
T ss_pred cHHHHHHHHHHHHHHHHCC-------CCCHHHHHHHHHHHHH-HHHHHHHHHHHH---HHHHHHHH
Confidence 5788999999999999976 4788999999999996 788898664443 34444444
No 378
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=26.30 E-value=85 Score=40.96 Aligned_cols=108 Identities=15% Similarity=0.078 Sum_probs=80.4
Q ss_pred CCeeEEEEec-CCCEEEEEeecCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEEEEe
Q 000733 107 ENVDILSLSN-DESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGGV 185 (1324)
Q Consensus 107 s~VshLAFSs-DEs~LAVcaesGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl 185 (1324)
+..++|+++. |..+||... |..|.+||.+ ....|+++++.+- +.|..+.+|--....+.-+++||+|..||.
T Consensus 159 s~asqVkwnyk~p~vlassh--g~~i~vwd~r----~gs~pl~s~K~~v-s~vn~~~fnr~~~s~~~s~~~d~tvkfw~y 231 (1081)
T KOG0309|consen 159 SAASQVKWNYKDPNVLASSH--GNDIFVWDLR----KGSTPLCSLKGHV-SSVNSIDFNRFKYSEIMSSSNDGTVKFWDY 231 (1081)
T ss_pred ccCceeeecccCcchhhhcc--CCceEEEecc----CCCcceEEecccc-eeeehHHHhhhhhhhhcccCCCCceeeecc
Confidence 3567888885 888888888 8899999987 3477888877643 678888898877677888999999999999
Q ss_pred CCCcee----ee--cceeEEEeccCCCEEEEEecCc---eEEEcc
Q 000733 186 NGPLED----VM--DNVDAVEWSVKGKFVAVAKKNV---LSILTS 221 (1324)
Q Consensus 186 ~e~lk~----Va--sgVScVcWSPKGKQLVVGlaDG---IsQyTP 221 (1324)
....+. +. ..|--.|.-|-|+-.++=-..| +-||.-
T Consensus 232 ~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c 276 (1081)
T KOG0309|consen 232 SKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRC 276 (1081)
T ss_pred cccccccceeccccCcceeccccccCceeEeccccCCeeeeeccc
Confidence 755322 11 3444567778888777766776 566644
No 379
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=25.96 E-value=1.5e+02 Score=36.00 Aligned_cols=135 Identities=13% Similarity=0.037 Sum_probs=0.0
Q ss_pred EEEEEcCCceEEEEehHHHHHHhhcccCCcccccccceeeeecCCCCCeeEE-EEecCCCEEEEEeecCCeEEEEEcccc
Q 000733 61 LIFAAHSSGFCVARTNDVIDAAKEMKENGTRCCVQELSVVDVPFENENVDIL-SLSNDESTLAVSLYQSPHIHFFSVHSL 139 (1324)
Q Consensus 61 LvfAAgpdGLvVarTsDLr~a~ksa~en~tv~~~~dl~vi~VPLp~s~VshL-AFSsDEs~LAVcaesGg~L~VYDV~SL 139 (1324)
|+|+|+-+|-+++ ++.-+-..+|.-. +..=.+++-|+.| -+--++.+|.+..+. |.|.+||.+..
T Consensus 266 Lv~~GcRngeI~~-----iDLR~rnqG~~~~--------a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~-gkikLyD~R~~ 331 (425)
T KOG2695|consen 266 LVFNGCRNGEIFV-----IDLRCRNQGNGWC--------AQRLYHDSSVTSLQILQFSQQKLMASDMT-GKIKLYDLRAT 331 (425)
T ss_pred eeEecccCCcEEE-----EEeeecccCCCcc--------eEEEEcCcchhhhhhhccccceEeeccCc-CceeEeeehhh
Q ss_pred cCCCCcceeEEecCCCcceEEEEecCCCCC----eEEEEEeCCeEEEEEeCCCceeee-----cceeEEEeccCCCEEEE
Q 000733 140 LNKEIKPSFSCSLNGSTYVKDIRWRKKPEN----SFLALSNVGRLYRGGVNGPLEDVM-----DNVDAVEWSVKGKFVAV 210 (1324)
Q Consensus 140 lng~t~P~~sisLn~st~VrdLaWNP~~as----lLAVVSsDGsL~Vldl~e~lk~Va-----sgVScVcWSPKGKQLVV 210 (1324)
.-|..---++ ..|+..+++|..-+ .++.+.+|--.+||.+..+-.+.. ..+.-.|||..-.+=-.
T Consensus 332 K~~~~V~qYe------GHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~s~~e~d~~sv~~~sr~~ 405 (425)
T KOG2695|consen 332 KCKKSVMQYE------GHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPYSASEVDIPSVAFDSRLG 405 (425)
T ss_pred hcccceeeee------cccccccccccccccccceEEEccCeeEEEEEecccCceeeccCCCCccccccccceehhcccc
Q ss_pred EecCc
Q 000733 211 AKKNV 215 (1324)
Q Consensus 211 GlaDG 215 (1324)
|..+|
T Consensus 406 k~~~g 410 (425)
T KOG2695|consen 406 KARGG 410 (425)
T ss_pred cccCC
No 380
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=25.30 E-value=7e+02 Score=30.93 Aligned_cols=92 Identities=16% Similarity=0.084 Sum_probs=57.3
Q ss_pred CeEEEEEcccccCC----------------CCcceeEEecCCCcceEEEEecCCC-CCeEEEEEeCCeEEEEEeCCCcee
Q 000733 129 PHIHFFSVHSLLNK----------------EIKPSFSCSLNGSTYVKDIRWRKKP-ENSFLALSNVGRLYRGGVNGPLED 191 (1324)
Q Consensus 129 g~L~VYDV~SLlng----------------~t~P~~sisLn~st~VrdLaWNP~~-aslLAVVSsDGsL~Vldl~e~lk~ 191 (1324)
-.|.-|.-+.|... .......|+.+-|..+.++.--... ....+++.-..+|++++.++.++.
T Consensus 196 ~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~~~~~~IvvLger~Lf~l~~~G~l~~ 275 (418)
T PF14727_consen 196 WTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFSSSESDIVVLGERSLFCLKDNGSLRF 275 (418)
T ss_pred eeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEEcCCCCceEEEEecceEEEEcCCCeEEE
Confidence 46777776666532 1333445666555677787765542 345677777888999988766543
Q ss_pred ee---cceeEEE-----eccCCC---EEEEEecCc-eEEEc
Q 000733 192 VM---DNVDAVE-----WSVKGK---FVAVAKKNV-LSILT 220 (1324)
Q Consensus 192 Va---sgVScVc-----WSPKGK---QLVVGlaDG-IsQyT 220 (1324)
.. -...|+| |-..+. .+++|+.+| +.+|.
T Consensus 276 ~krLd~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~ 316 (418)
T PF14727_consen 276 QKRLDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYE 316 (418)
T ss_pred EEecCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEe
Confidence 32 3334433 233332 588899999 99995
No 381
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=25.21 E-value=1e+03 Score=31.78 Aligned_cols=130 Identities=13% Similarity=0.129 Sum_probs=72.4
Q ss_pred CCcceEeeCCcce--EEEEEcCCc-eEEEEehHHHHHHhhcc-cCCc----ccccccceeeeecCCCCCeeEEEEe-cCC
Q 000733 48 PSLPLAVSQLSHQ--LIFAAHSSG-FCVARTNDVIDAAKEMK-ENGT----RCCVQELSVVDVPFENENVDILSLS-NDE 118 (1324)
Q Consensus 48 ~sSLLAVSN~K~G--LvfAAgpdG-LvVarTsDLr~a~ksa~-en~t----v~~~~dl~vi~VPLp~s~VshLAFS-sDE 118 (1324)
+-|.+-|.+ =.| +++++..+| |.+.+|++|..++.... ++.. ....|.+. ..|+. -+.-||+. .++
T Consensus 102 tIN~i~v~~-lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~-~~v~~---SaWGLdIh~~~~ 176 (717)
T PF08728_consen 102 TINFIKVGD-LGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFH-LRVGA---SAWGLDIHDYKK 176 (717)
T ss_pred eeeEEEecc-cCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeE-eecCC---ceeEEEEEecCc
Confidence 478887777 222 356667777 66679999998886651 1110 01112222 23432 36677775 344
Q ss_pred CEEEEEeecCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCC--CC---eEEEEEeCCeEEEEEe
Q 000733 119 STLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKP--EN---SFLALSNVGRLYRGGV 185 (1324)
Q Consensus 119 s~LAVcaesGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~--as---lLAVVSsDGsL~Vldl 185 (1324)
..|+++..++..|.||.-... ........++.. ..-|-++.+.++. .+ .++.++=.|+|.++++
T Consensus 177 ~rlIAVSsNs~~VTVFaf~l~-~~r~~~~~s~~~--~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 177 SRLIAVSSNSQEVTVFAFALV-DERFYHVPSHQH--SHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred ceEEEEecCCceEEEEEEecc-cccccccccccc--ccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 445444446567777654432 111111112222 2356677777764 22 5666778999999988
No 382
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=24.96 E-value=1.1e+03 Score=28.36 Aligned_cols=111 Identities=8% Similarity=-0.015 Sum_probs=72.5
Q ss_pred CeeEEEEecCCCEEEEEeecCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEE--eCCeEEEEEe
Q 000733 108 NVDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALS--NVGRLYRGGV 185 (1324)
Q Consensus 108 ~VshLAFSsDEs~LAVcaesGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVS--sDGsL~Vldl 185 (1324)
....++++.++..+.|+......|.++|+..... ...+.++ ..-..++++|.....++.-. .++.+.++|-
T Consensus 75 ~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~-----~~~~~vG--~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~ 147 (381)
T COG3391 75 YPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTV-----LGSIPVG--LGPVGLAVDPDGKYVYVANAGNGNNTVSVIDA 147 (381)
T ss_pred cccceeeCCCCCeEEEecCCCCeEEEEcCcccce-----eeEeeec--cCCceEEECCCCCEEEEEecccCCceEEEEeC
Confidence 5678999999998888886667899999443221 1222232 24578889887765555555 3677777777
Q ss_pred CCCce--eee--cceeEEEeccCCCEEEEEec-Cc-eEEEccCccc
Q 000733 186 NGPLE--DVM--DNVDAVEWSVKGKFVAVAKK-NV-LSILTSKLKE 225 (1324)
Q Consensus 186 ~e~lk--~Va--sgVScVcWSPKGKQLVVGla-DG-IsQyTPDgee 225 (1324)
..... .+. ..-.-++.+|+|+++.+... ++ |..+.++...
T Consensus 148 ~t~~~~~~~~vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~ 193 (381)
T COG3391 148 ATNKVTATIPVGNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNS 193 (381)
T ss_pred CCCeEEEEEecCCCcceEEECCCCCeEEEEecCCCeEEEEeCCCcc
Confidence 54411 121 12267889999998887774 45 8888655443
No 383
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=24.87 E-value=1.7e+02 Score=38.19 Aligned_cols=85 Identities=15% Similarity=0.292 Sum_probs=55.3
Q ss_pred CCeEEEEEeCCeEEEEEeCCC-ceee----ecceeE-EEeccCCCEEEEEecCc-eEEEccCcccccccccCccccCCCC
Q 000733 168 ENSFLALSNVGRLYRGGVNGP-LEDV----MDNVDA-VEWSVKGKFVAVAKKNV-LSILTSKLKERLPISLSFKSWVGDC 240 (1324)
Q Consensus 168 aslLAVVSsDGsL~Vldl~e~-lk~V----asgVSc-VcWSPKGKQLVVGlaDG-IsQyTPDgeeKkvIP~Pf~S~I~D~ 240 (1324)
...+|+-++-|.||+++-..+ ...+ +.+++| .|-|+.-+.+|+|+++| |.+|-- +. ..|.+. ..+-.+
T Consensus 45 ~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql--~~--~~p~~~-~~~t~~ 119 (726)
T KOG3621|consen 45 EEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQL--NK--ELPRDL-DYVTPC 119 (726)
T ss_pred CceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehh--hc--cCCCcc-eeeccc
Confidence 357888899999999987654 2222 234444 56789999999999999 888832 21 223321 011113
Q ss_pred CCCCceeEEEEEEecCC
Q 000733 241 DVNCSVKVDSIRWVRRD 257 (1324)
Q Consensus 241 d~d~sV~V~SI~WLeNd 257 (1324)
|......|..+.|-.|.
T Consensus 120 d~~~~~rVTal~Ws~~~ 136 (726)
T KOG3621|consen 120 DKSHKCRVTALEWSKNG 136 (726)
T ss_pred cccCCceEEEEEecccc
Confidence 33346789999998773
No 384
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=24.45 E-value=1.5e+02 Score=26.02 Aligned_cols=34 Identities=12% Similarity=0.194 Sum_probs=25.3
Q ss_pred CeeEEEEecCCC--EEEEEeecCCeEEEEEcc-cccC
Q 000733 108 NVDILSLSNDES--TLAVSLYQSPHIHFFSVH-SLLN 141 (1324)
Q Consensus 108 ~VshLAFSsDEs--~LAVcaesGg~L~VYDV~-SLln 141 (1324)
-+..+.||++.. =|.+.+|.-+.|+++|++ .+..
T Consensus 2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~f~~ 38 (43)
T PF10313_consen 2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSNFMR 38 (43)
T ss_pred CeEEEEeCCCCCcccEEEEEccCCeEEEEEcccCccc
Confidence 367889996555 456667777899999999 4543
No 385
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=24.12 E-value=1.4e+02 Score=35.74 Aligned_cols=95 Identities=17% Similarity=0.171 Sum_probs=61.9
Q ss_pred CeeEEEEecCCCEEEEEeecCCeEEEEEcccccCCCC---------cc----eeEEecCCCcceEEEEecCC-CCCeEEE
Q 000733 108 NVDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEI---------KP----SFSCSLNGSTYVKDIRWRKK-PENSFLA 173 (1324)
Q Consensus 108 ~VshLAFSsDEs~LAVcaesGg~L~VYDV~SLlng~t---------~P----~~sisLn~st~VrdLaWNP~-~aslLAV 173 (1324)
.|+.|-|-.-|.||+... .||.|-+|.-.......- .+ +.++.+ ...|..+.|.-. ..+.|++
T Consensus 28 ~ItaVefd~tg~YlatGD-kgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSlei--eEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 28 KITAVEFDETGLYLATGD-KGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEI--EEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred eeeEEEeccccceEeecC-CCceEEEeecccccccchhhhhhhcccccchhhhhhccH--HHHhhheeeecCCCcceEEE
Confidence 688888988888876654 567888887654431111 11 112222 357899999764 3457999
Q ss_pred EEeCCeEEEEEeCCC-ceeeec-ceeEEEeccCC
Q 000733 174 LSNVGRLYRGGVNGP-LEDVMD-NVDAVEWSVKG 205 (1324)
Q Consensus 174 VSsDGsL~Vldl~e~-lk~Vas-gVScVcWSPKG 205 (1324)
.++|.+|.+|.+.+. ++++++ +.+----||+|
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~ 138 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMG 138 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccC
Confidence 999999999999754 677653 33333335665
No 386
>PRK10115 protease 2; Provisional
Probab=24.02 E-value=1.7e+03 Score=29.08 Aligned_cols=103 Identities=15% Similarity=0.235 Sum_probs=59.4
Q ss_pred eeEEEEecCCCEEEEEeec-CC---eEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeC-C-----
Q 000733 109 VDILSLSNDESTLAVSLYQ-SP---HIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNV-G----- 178 (1324)
Q Consensus 109 VshLAFSsDEs~LAVcaes-Gg---~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsD-G----- 178 (1324)
+..+.+|+|+.+|+..... |. .|++.|+. .|..-+- .+.+ .. ..+.|.|+.. .|.....+ +
T Consensus 129 l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~---tg~~l~~---~i~~-~~-~~~~w~~D~~-~~~y~~~~~~~~~~~ 199 (686)
T PRK10115 129 LGGMAITPDNTIMALAEDFLSRRQYGIRFRNLE---TGNWYPE---LLDN-VE-PSFVWANDSW-TFYYVRKHPVTLLPY 199 (686)
T ss_pred EeEEEECCCCCEEEEEecCCCcEEEEEEEEECC---CCCCCCc---cccC-cc-eEEEEeeCCC-EEEEEEecCCCCCCC
Confidence 5566789999988877644 33 35555554 3321110 1111 22 3589988654 45555443 2
Q ss_pred eEEEEEeCCC---ceeeecc----eeEEEecc-CCCEEEEEecCc----eEEEc
Q 000733 179 RLYRGGVNGP---LEDVMDN----VDAVEWSV-KGKFVAVAKKNV----LSILT 220 (1324)
Q Consensus 179 sL~Vldl~e~---lk~Vasg----VScVcWSP-KGKQLVVGlaDG----IsQyT 220 (1324)
.++.++++.. ...+..+ .....|.+ +|+++++...++ +..|.
T Consensus 200 ~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~ 253 (686)
T PRK10115 200 QVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLD 253 (686)
T ss_pred EEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEE
Confidence 5788888755 2334322 33355656 999998877765 55554
No 387
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=23.58 E-value=7.7e+02 Score=29.81 Aligned_cols=77 Identities=18% Similarity=0.127 Sum_probs=54.1
Q ss_pred CCeEEEEEeCCeEEEEEeCCC-------ceeeecceeEEEec-cCCCEEEEEecCc-eEEEccCcccccccccC-ccccC
Q 000733 168 ENSFLALSNVGRLYRGGVNGP-------LEDVMDNVDAVEWS-VKGKFVAVAKKNV-LSILTSKLKERLPISLS-FKSWV 237 (1324)
Q Consensus 168 aslLAVVSsDGsL~Vldl~e~-------lk~VasgVScVcWS-PKGKQLVVGlaDG-IsQyTPDgeeKkvIP~P-f~S~I 237 (1324)
++.+-.-..||.|..||+.-. .+++..||.|+-=| ||+-+|++|.-|. |..| ..|.+..| ++-.+
T Consensus 178 pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~-----DtRnm~kPl~~~~v 252 (339)
T KOG0280|consen 178 PNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVL-----DTRNMGKPLFKAKV 252 (339)
T ss_pred CceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeee-----ehhcccCccccCcc
Confidence 356666789999999999722 23456899998877 5799999999998 9888 45667777 32111
Q ss_pred CCCCCCCceeEEEEEEecC
Q 000733 238 GDCDVNCSVKVDSIRWVRR 256 (1324)
Q Consensus 238 ~D~d~d~sV~V~SI~WLeN 256 (1324)
.++ |=-|.|...
T Consensus 253 ----~GG---VWRi~~~p~ 264 (339)
T KOG0280|consen 253 ----GGG---VWRIKHHPE 264 (339)
T ss_pred ----ccc---eEEEEecch
Confidence 222 666677654
No 388
>PRK14067 exodeoxyribonuclease VII small subunit; Provisional
Probab=23.36 E-value=2.9e+02 Score=26.96 Aligned_cols=48 Identities=19% Similarity=0.385 Sum_probs=40.1
Q ss_pred hcccCCHHHHHHHHHHHHHhhhccCCccccchhhhhccHHHHHHHHhhHHHHhhhh
Q 000733 751 SKQSGNIKEMTKELDMLLQSIEETGGFRDACTVFQRQKVEELEEGIGSLSEKCGMW 806 (1324)
Q Consensus 751 skq~~ni~em~keld~ll~~ie~~ggf~dac~~~~~~~v~~~e~~~~~l~~~c~~~ 806 (1324)
.|+--++.|.-++|+.++.-||.+ .+.+..+++.+|+|+. |+..|+..
T Consensus 3 ~~k~~sfEeal~~LEeIV~~LE~~-------~l~Lees~~lyeeG~~-L~k~C~~~ 50 (80)
T PRK14067 3 RKKTADFEQQLARLQEIVDALEGG-------DLPLEESVALYKEGLG-LARACREQ 50 (80)
T ss_pred CcccCCHHHHHHHHHHHHHHHHCC-------CCCHHHHHHHHHHHHH-HHHHHHHH
Confidence 455567899999999999999986 4788899999999985 78888754
No 389
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=22.90 E-value=2.9e+02 Score=34.67 Aligned_cols=90 Identities=18% Similarity=0.260 Sum_probs=55.1
Q ss_pred eecCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEEEEeCCCc-----------e---
Q 000733 125 LYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGGVNGPL-----------E--- 190 (1324)
Q Consensus 125 aesGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl~e~l-----------k--- 190 (1324)
....|.+.|||=.. .. -++.+.-.+ +-.+|..+..||... .+.-....|-+--|...... +
T Consensus 118 ~~~sg~i~VvD~~~--d~-~q~~~fkkl-H~sPV~~i~y~qa~D-s~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eT 192 (558)
T KOG0882|consen 118 LFKSGKIFVVDGFG--DF-CQDGYFKKL-HFSPVKKIRYNQAGD-SAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHET 192 (558)
T ss_pred cccCCCcEEECCcC--Cc-Cccceeccc-ccCceEEEEeecccc-ceeeccccceeEeecCCCcccCccccccccccccc
Confidence 33456777777332 11 111111122 235789999999765 35555556888888775311 0
Q ss_pred e------eecceeEEEeccCCCEEEEEecCc-eEEE
Q 000733 191 D------VMDNVDAVEWSVKGKFVAVAKKNV-LSIL 219 (1324)
Q Consensus 191 ~------VasgVScVcWSPKGKQLVVGlaDG-IsQy 219 (1324)
. ..+..+|+|+||.|+||..-..|- |..+
T Consensus 193 dLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F 228 (558)
T KOG0882|consen 193 DLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGF 228 (558)
T ss_pred hhhcccccccCccceEEccccCcccccCcccEEEEE
Confidence 0 136788999999999998777666 6555
No 390
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=22.30 E-value=1.3e+03 Score=27.15 Aligned_cols=120 Identities=17% Similarity=0.128 Sum_probs=67.2
Q ss_pred eeEEEEecCCCEEEEEeecC---CeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeC----CeEE
Q 000733 109 VDILSLSNDESTLAVSLYQS---PHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNV----GRLY 181 (1324)
Q Consensus 109 VshLAFSsDEs~LAVcaesG---g~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsD----GsL~ 181 (1324)
.-.+..|.|+.+|++...++ ..|++.++.....+ ...+..+..........+... ...|.+++++ |.|+
T Consensus 229 ~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~-~~~~~~l~~~~~~~~~~v~~~---~~~~yi~Tn~~a~~~~l~ 304 (414)
T PF02897_consen 229 FVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSP-DAKPKLLSPREDGVEYYVDHH---GDRLYILTNDDAPNGRLV 304 (414)
T ss_dssp EEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTS-S-SEEEEEESSSS-EEEEEEE---TTEEEEEE-TT-TT-EEE
T ss_pred EEEEEecCcccEEEEEEEccccCCeEEEEeccccCCC-cCCcEEEeCCCCceEEEEEcc---CCEEEEeeCCCCCCcEEE
Confidence 44678899999999887653 35677776653211 112222222111222333332 4567777764 6778
Q ss_pred EEEeCCCc----e-eee---cceeEEEeccCCCEEEEE-ecCc---eEEEccC-cccccccccC
Q 000733 182 RGGVNGPL----E-DVM---DNVDAVEWSVKGKFVAVA-KKNV---LSILTSK-LKERLPISLS 232 (1324)
Q Consensus 182 Vldl~e~l----k-~Va---sgVScVcWSPKGKQLVVG-laDG---IsQyTPD-geeKkvIP~P 232 (1324)
..++.... . .+. ..+.-..++.-|++||+- ..|| |.+|..+ +.....++.|
T Consensus 305 ~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p 368 (414)
T PF02897_consen 305 AVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKESREIPLP 368 (414)
T ss_dssp EEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TEEEEEEESS
T ss_pred EecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCCcEEeeecCC
Confidence 88886542 1 232 455666666777777655 5556 8888777 6666777776
No 391
>KOG0489 consensus Transcription factor zerknullt and related HOX domain proteins [General function prediction only]
Probab=22.25 E-value=47 Score=37.98 Aligned_cols=38 Identities=45% Similarity=0.594 Sum_probs=26.0
Q ss_pred HHHH-HHHHHHhh--hccccccccccCCCCccccccCCcCCCCCcccchhhhhhhhhhhhHHHHHHHHHHHHHh
Q 000733 871 QDLI-NQLIELER--HFNSLELNKFGENDGVHGCQRRPQSRFGTSRHIQSLHSLHTTMSSQIAAAEQLSDRLSK 941 (1324)
Q Consensus 871 ~~l~-~ql~~~er--~fn~~e~~~~~~~~~~~~~~~~~~~~~~~s~~~qsl~s~~n~~~sq~~aae~ls~~lsk 941 (1324)
+..| +||+|||. |||+-. .+.|+|+ +|.|..|+|+.-|
T Consensus 164 tayT~~QllELEkEFhfN~YL---------------------tR~RRiE------------iA~~L~LtErQIK 204 (261)
T KOG0489|consen 164 TAFTRYQLLELEKEFHFNKYL---------------------TRSRRIE------------IAHALNLTERQIK 204 (261)
T ss_pred cccchhhhhhhhhhhcccccc---------------------chHHHHH------------HHhhcchhHHHHH
Confidence 3445 89999987 555432 2345555 8889999998655
No 392
>PRK14063 exodeoxyribonuclease VII small subunit; Provisional
Probab=22.18 E-value=2.9e+02 Score=26.59 Aligned_cols=56 Identities=18% Similarity=0.341 Sum_probs=42.9
Q ss_pred CCHHHHHHHHHHHHHhhhccCCccccchhhhhccHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHH
Q 000733 755 GNIKEMTKELDMLLQSIEETGGFRDACTVFQRQKVEELEEGIGSLSEKCGMWRSIMDERLQEIQNLF 821 (1324)
Q Consensus 755 ~ni~em~keld~ll~~ie~~ggf~dac~~~~~~~v~~~e~~~~~l~~~c~~~~~~~~~~~~~~~~~~ 821 (1324)
-+..|+-++|+.+++-+|.+ .+.+..++..+|+|+. |+..|+-. +++--++|+.|+
T Consensus 5 ~sfEeal~~LE~Iv~~LE~~-------~l~Leesl~lyeeG~~-L~k~C~~~---L~~aE~ki~~l~ 60 (76)
T PRK14063 5 LSFEEAISQLEHLVSKLEQG-------DVPLEEAISYFKEGME-LSKLCDEK---LKNVQEQMAVIL 60 (76)
T ss_pred cCHHHHHHHHHHHHHHHHCC-------CCCHHHHHHHHHHHHH-HHHHHHHH---HHHHHHHHHHHH
Confidence 36889999999999999965 4788899999999996 78889754 444444444444
No 393
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=22.09 E-value=4.1e+02 Score=33.61 Aligned_cols=101 Identities=12% Similarity=0.021 Sum_probs=59.7
Q ss_pred CCCEEEEEeecCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEEEEeCCCcee----e
Q 000733 117 DESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGGVNGPLED----V 192 (1324)
Q Consensus 117 DEs~LAVcaesGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl~e~lk~----V 192 (1324)
.+.-|.|..+.|+.-.-|||+.-=.........+++.+ +.+.-+.+--+. ..|+.+..+|+|.++--.....+ +
T Consensus 279 Gg~SLLv~~~dG~vsQWFdvr~~~~p~l~h~R~f~l~p-a~~~~l~pe~~r-kgF~~l~~~G~L~~f~st~~~~lL~~~~ 356 (733)
T COG4590 279 GGFSLLVVHEDGLVSQWFDVRRDGQPHLNHIRNFKLAP-AEVQFLLPETNR-KGFYSLYRNGTLQSFYSTSEKLLLFERA 356 (733)
T ss_pred CceeEEEEcCCCceeeeeeeecCCCCcceeeeccccCc-ccceeecccccc-ceEEEEcCCCceeeeecccCcceehhhh
Confidence 45556666666666667787742111122222222332 334444442222 37999999999988765433222 2
Q ss_pred ecceeEEEeccCCCEEEEEecCceEEE
Q 000733 193 MDNVDAVEWSVKGKFVAVAKKNVLSIL 219 (1324)
Q Consensus 193 asgVScVcWSPKGKQLVVGlaDGIsQy 219 (1324)
.++..-++.||.|.+|.+-.+.++..|
T Consensus 357 ~~~~~~~~~Sp~~~~Ll~e~~gki~~~ 383 (733)
T COG4590 357 YQAPQLVAMSPNQAYLLSEDQGKIRLA 383 (733)
T ss_pred hcCcceeeeCcccchheeecCCceEEE
Confidence 467778999999999986655556666
No 394
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=22.00 E-value=3e+02 Score=34.56 Aligned_cols=109 Identities=10% Similarity=0.021 Sum_probs=71.4
Q ss_pred CeeEEEEecCCCEEEEEeecCCeEEEEEccccc--CCCCcceeEEecCCCcceEEEEecCCCCC-eEEEE-EeCCeEEEE
Q 000733 108 NVDILSLSNDESTLAVSLYQSPHIHFFSVHSLL--NKEIKPSFSCSLNGSTYVKDIRWRKKPEN-SFLAL-SNVGRLYRG 183 (1324)
Q Consensus 108 ~VshLAFSsDEs~LAVcaesGg~L~VYDV~SLl--ng~t~P~~sisLn~st~VrdLaWNP~~as-lLAVV-SsDGsL~Vl 183 (1324)
-+.+|+.|-||..+......+-.+.+|||.++- ++-..++. |+ -.+..-+|+..- ++||- -.+|.+.|+
T Consensus 55 ~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~l-----Pg--~a~wv~skGd~~s~IAVs~~~sg~i~Vv 127 (558)
T KOG0882|consen 55 VILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDL-----PG--FAEWVTSKGDKISLIAVSLFKSGKIFVV 127 (558)
T ss_pred HHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccC-----CC--ceEEecCCCCeeeeEEeecccCCCcEEE
Confidence 377889999999776544435689999998653 22111111 21 122333343322 33332 358888888
Q ss_pred EeCCC-------ceeeecceeEEEeccCCCEEEEEecCc-eEEEccCc
Q 000733 184 GVNGP-------LEDVMDNVDAVEWSVKGKFVAVAKKNV-LSILTSKL 223 (1324)
Q Consensus 184 dl~e~-------lk~VasgVScVcWSPKGKQLVVGlaDG-IsQyTPDg 223 (1324)
|-... .+++.+.|.|.-..+-|+-++.+...| |.-|++++
T Consensus 128 D~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~ 175 (558)
T KOG0882|consen 128 DGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEG 175 (558)
T ss_pred CCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCC
Confidence 76432 145579999999999999999999999 99998764
No 395
>PRK13614 lipoprotein LpqB; Provisional
Probab=21.97 E-value=9.5e+02 Score=31.04 Aligned_cols=77 Identities=10% Similarity=0.019 Sum_probs=48.1
Q ss_pred CeeEEEEecCCCEEEEEeecCCe--EEEEEcccccCCCCcceeE-EecCCCcceEEEEecCCCCCeEEEEEeC----CeE
Q 000733 108 NVDILSLSNDESTLAVSLYQSPH--IHFFSVHSLLNKEIKPSFS-CSLNGSTYVKDIRWRKKPENSFLALSNV----GRL 180 (1324)
Q Consensus 108 ~VshLAFSsDEs~LAVcaesGg~--L~VYDV~SLlng~t~P~~s-isLn~st~VrdLaWNP~~aslLAVVSsD----GsL 180 (1324)
.|+-|.+|.||..+++..+.+|. |+|--|.-=-.|....+.. +.+.....+.++.|..+. .|+|++.. -..
T Consensus 435 ~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~G~P~~L~~~~~~~~~~~~~sl~W~~~~--sl~V~~~~~~~~~~~ 512 (573)
T PRK13614 435 TVKELRVSREGVRALVISEQNGKSRVQVAGIVRNEDGTPRELTAPITLAADSDADTGAWVGDS--TVVVTKASATSNVVP 512 (573)
T ss_pred eeEEEEECCCccEEEEEEEeCCccEEEEEEEEeCCCCCeEEccCceecccCCCcceeEEcCCC--EEEEEeccCCCcceE
Confidence 59999999999999998876665 7765554421222111111 122223578999997754 47777542 345
Q ss_pred EEEEeC
Q 000733 181 YRGGVN 186 (1324)
Q Consensus 181 ~Vldl~ 186 (1324)
++..+.
T Consensus 513 ~~v~v~ 518 (573)
T PRK13614 513 ELLSVD 518 (573)
T ss_pred EEEEeC
Confidence 677773
No 396
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=21.66 E-value=1.1e+02 Score=36.58 Aligned_cols=112 Identities=14% Similarity=0.301 Sum_probs=73.2
Q ss_pred eeEEEEecCCCEEEEEeecCCeEEEEEcccccCC-----CCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEEE
Q 000733 109 VDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNK-----EIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRG 183 (1324)
Q Consensus 109 VshLAFSsDEs~LAVcaesGg~L~VYDV~SLlng-----~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vl 183 (1324)
+..++|++|..+|..+. +-.|.+|...-. .+ ++.|--.-.+- .-|..-.+.|...+.|.--++.|++.+.
T Consensus 175 iNSiS~NsD~et~lSaD--dLrINLWnl~i~-D~sFnIVDiKP~nmeeLt--eVItSaeFhp~~cn~fmYSsSkG~Ikl~ 249 (460)
T COG5170 175 INSISFNSDKETLLSAD--DLRINLWNLEII-DGSFNIVDIKPHNMEELT--EVITSAEFHPEMCNVFMYSSSKGEIKLN 249 (460)
T ss_pred eeeeeecCchheeeecc--ceeeeecccccc-CCceEEEeccCccHHHHH--HHHhhcccCHhHcceEEEecCCCcEEeh
Confidence 45679999999998888 788899986532 22 22221100000 2345556677666678888999999999
Q ss_pred EeCCC-----cee----------------eecceeEEEeccCCCEEEEEecCceEEEccCccc
Q 000733 184 GVNGP-----LED----------------VMDNVDAVEWSVKGKFVAVAKKNVLSILTSKLKE 225 (1324)
Q Consensus 184 dl~e~-----lk~----------------VasgVScVcWSPKGKQLVVGlaDGIsQyTPDgee 225 (1324)
|+... .+. +...++-+-+|+.|++|+.-.-..+++|.-.+..
T Consensus 250 DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~k 312 (460)
T COG5170 250 DLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAK 312 (460)
T ss_pred hhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEEEEeccccc
Confidence 88521 111 1145567899999999987766679999655543
No 397
>PF00482 T2SF: Type II secretion system (T2SS), protein F; InterPro: IPR018076 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) [], have been found to be evolutionary related. These are proteins of about 400 amino acids that are highly hydrophobic and which are thought to be integral protein of the inner membrane. Proteins with this domain form a platform for the type II secretion machinery, as well as the type IV pili and the archaeal flagellae [].; PDB: 2VMA_A 3C1Q_A 2VMB_B 2WHN_B.
Probab=21.63 E-value=3.5e+02 Score=25.31 Aligned_cols=43 Identities=9% Similarity=0.169 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHhhhccCCccccchhhhhccHHHHHHHHhhHH
Q 000733 757 IKEMTKELDMLLQSIEETGGFRDACTVFQRQKVEELEEGIGSLS 800 (1324)
Q Consensus 757 i~em~keld~ll~~ie~~ggf~dac~~~~~~~v~~~e~~~~~l~ 800 (1324)
-.+|.+|++.+..-++.-+-+.+|...+.. .+..+...+-...
T Consensus 28 ~~~l~~~~~~~~~~l~~G~~~~~al~~~~~-~~~~~~~~~~~~~ 70 (124)
T PF00482_consen 28 SGPLREELQKIRRRLRNGGSLEEALERTGS-EFPDFVASLIQAG 70 (124)
T ss_dssp SHHHHHHHHHHHHHHHTT--HHHHHCTSTT-TS-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCCHHHHHHHhcc-cCchHHHHHHHHH
Confidence 468899999999999888878887763221 3444444443333
No 398
>PRK14070 exodeoxyribonuclease VII small subunit; Provisional
Probab=21.41 E-value=2.3e+02 Score=27.01 Aligned_cols=51 Identities=20% Similarity=0.417 Sum_probs=37.8
Q ss_pred HHHHHHHHhhhccCCccccchhhhhccHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHHh
Q 000733 762 KELDMLLQSIEETGGFRDACTVFQRQKVEELEEGIGSLSEKCGMWRSIMDERLQEIQNLFDK 823 (1324)
Q Consensus 762 keld~ll~~ie~~ggf~dac~~~~~~~v~~~e~~~~~l~~~c~~~~~~~~~~~~~~~~~~~k 823 (1324)
++|+.+++.||.. .+.+..+++.+|+||. |+..|+.+ +++--++|+.++..
T Consensus 2 ~~LEeIV~~LE~g-------el~Leesl~lyeeG~~-L~k~C~~~---L~~aE~kI~~l~~e 52 (69)
T PRK14070 2 KELEEIVNRLENE-------DLPLEESIKLFERGVE-LYRKCKEI---LQQNRLKIIDVMKE 52 (69)
T ss_pred HHHHHHHHHHHCC-------CCCHHHHHHHHHHHHH-HHHHHHHH---HHHHHHHHHHHHHh
Confidence 5789999999876 4788899999999996 78899765 44444555554443
No 399
>cd09238 V_Alix_like_1 Protein-interacting V-domain of an uncharacterized family of the V_Alix_like superfamily. This domain family is comprised of uncharacterized plant proteins. It belongs to the V_Alix_like superfamily which includes the V-shaped (V) domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X), (His-Domain) type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. Alix, HD-PTP, Bro1, a
Probab=21.40 E-value=2.5e+02 Score=33.24 Aligned_cols=76 Identities=17% Similarity=0.211 Sum_probs=45.1
Q ss_pred cCCHHHHHHHHHHHHHhhh---------ccCCcccc-------chhhhhccHHHHHHHHhhHHHHhhhhHHHHHHHHHHH
Q 000733 754 SGNIKEMTKELDMLLQSIE---------ETGGFRDA-------CTVFQRQKVEELEEGIGSLSEKCGMWRSIMDERLQEI 817 (1324)
Q Consensus 754 ~~ni~em~keld~ll~~ie---------~~ggf~da-------c~~~~~~~v~~~e~~~~~l~~~c~~~~~~~~~~~~~~ 817 (1324)
.+.+.+|+.+|...|.+.. +|-|.-++ ..+-+..-++.|++.|..|.+.|..=+.+ +.|+
T Consensus 23 ~~~l~~at~~~~~~L~~lnLP~sl~al~~~~~lp~sl~~~~~~~~v~~~gG~~~l~~~l~~L~~l~~~~~~~----L~e~ 98 (339)
T cd09238 23 ADRLAAASDEARVALREMELPETLIALDGGASLPGDLGLDEEVEAVQISGGLAALEGELPRLRELRRVCTEL----LAAA 98 (339)
T ss_pred HHHHHHHHHHHHHHHHhcCCcHHHHHhcCCCCCCCccchHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHH----HHHH
Confidence 3567888888888887654 44344332 23344566677777777777766654443 4556
Q ss_pred HHHHHhHHH--HHHHHHh
Q 000733 818 QNLFDKTVQ--VLARKIY 833 (1324)
Q Consensus 818 ~~~~~k~~~--v~a~~~~ 833 (1324)
+.+||.=-. -..|.-|
T Consensus 99 ~~~Ld~E~~eD~~~R~ky 116 (339)
T cd09238 99 QESLEAEATEDSAARTQY 116 (339)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 666664332 3444444
No 400
>smart00108 B_lectin Bulb-type mannose-specific lectin.
Probab=21.19 E-value=3.9e+02 Score=26.31 Aligned_cols=49 Identities=24% Similarity=0.201 Sum_probs=31.3
Q ss_pred eEEEEEeCCeEEEEEeCCCceeeecceeEEEeccCCCEEEEEecCc-eEEEccCc
Q 000733 170 SFLALSNVGRLYRGGVNGPLEDVMDNVDAVEWSVKGKFVAVAKKNV-LSILTSKL 223 (1324)
Q Consensus 170 lLAVVSsDGsL~Vldl~e~lk~VasgVScVcWSPKGKQLVVGlaDG-IsQyTPDg 223 (1324)
..+++..||.|.+.+-... .+-.++.. ...|...++-..|| +.+|.+.+
T Consensus 56 ~~l~l~~dGnLvl~~~~g~-~vW~S~t~----~~~~~~~~~L~ddGnlvl~~~~~ 105 (114)
T smart00108 56 CTLTLQSDGNLVLYDGDGR-VVWSSNTT----GANGNYVLVLLDDGNLVIYDSDG 105 (114)
T ss_pred EEEEEeCCCCEEEEeCCCC-EEEEeccc----CCCCceEEEEeCCCCEEEECCCC
Confidence 5677788999999876542 11122221 24566777777889 99996543
No 401
>cd08915 V_Alix_like Protein-interacting V-domain of mammalian Alix and related domains. This superfamily contains the V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Bro1, and Rim20 all interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. The Alix V-domain contains
Probab=21.02 E-value=1.9e+02 Score=33.86 Aligned_cols=69 Identities=14% Similarity=0.277 Sum_probs=49.1
Q ss_pred ccc-CCHHHHHHHHHHHHHhhhccCCcccc------------ch-hhhhccHHHHHHHHhhHHHHhhhhHHHHHHHHHHH
Q 000733 752 KQS-GNIKEMTKELDMLLQSIEETGGFRDA------------CT-VFQRQKVEELEEGIGSLSEKCGMWRSIMDERLQEI 817 (1324)
Q Consensus 752 kq~-~ni~em~keld~ll~~ie~~ggf~da------------c~-~~~~~~v~~~e~~~~~l~~~c~~~~~~~~~~~~~~ 817 (1324)
+.+ ..+.++++||...|.+..=||...+- |. +.+..-++.+++.|+.|.+.++.|+.+++ |+
T Consensus 21 ~e~~~~~e~~~~~l~~~L~slnLP~sl~~l~~~~~lP~~~~~~~~i~~~gg~~~l~~~~~~l~~l~~~~~~~l~----~~ 96 (342)
T cd08915 21 EHIVEPIEALNKLLNSFLAERNLPASIDDLQKPENLPDSIQHSQEIIEEGGLDNIEQSFKELSKLRQNVEELLQ----EC 96 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCChHHHHhcCCCCCCchHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHHHH----HH
Confidence 345 67889999999988887655554432 22 23456688999999999999999988875 55
Q ss_pred HHHHHhH
Q 000733 818 QNLFDKT 824 (1324)
Q Consensus 818 ~~~~~k~ 824 (1324)
+.+||.=
T Consensus 97 ~~~L~~E 103 (342)
T cd08915 97 EELLEEE 103 (342)
T ss_pred HHHHHHH
Confidence 5666543
No 402
>PRK00977 exodeoxyribonuclease VII small subunit; Provisional
Probab=20.52 E-value=3.7e+02 Score=26.13 Aligned_cols=58 Identities=19% Similarity=0.420 Sum_probs=46.1
Q ss_pred CCHHHHHHHHHHHHHhhhccCCccccchhhhhccHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHHh
Q 000733 755 GNIKEMTKELDMLLQSIEETGGFRDACTVFQRQKVEELEEGIGSLSEKCGMWRSIMDERLQEIQNLFDK 823 (1324)
Q Consensus 755 ~ni~em~keld~ll~~ie~~ggf~dac~~~~~~~v~~~e~~~~~l~~~c~~~~~~~~~~~~~~~~~~~k 823 (1324)
-+..|.-++|+.++..+|.+ .+.+..+++.+|+|+. |...|+ .++++--++|+.|+++
T Consensus 10 ~sfEea~~~LEeIv~~LE~~-------~l~Lees~~lyeeg~~-L~k~C~---~~L~~ae~ki~~l~~~ 67 (80)
T PRK00977 10 LSFEEALAELEEIVTRLESG-------DLPLEESLAAFERGVA-LARQCQ---KKLQQAEQRVEKLLDE 67 (80)
T ss_pred CCHHHHHHHHHHHHHHHHCC-------CCCHHHHHHHHHHHHH-HHHHHH---HHHHHHHHHHHHHHhc
Confidence 46889999999999999976 4778889999999985 778886 4666666677766654
No 403
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=20.38 E-value=1.6e+03 Score=29.82 Aligned_cols=148 Identities=13% Similarity=0.171 Sum_probs=77.9
Q ss_pred ecCCCCCeeEEEEecCCCEEEEEeecCCeEEEEEcccccCCCCcceeEEecCC------CcceEEEEecCCCCCeEEEEE
Q 000733 102 VPFENENVDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNG------STYVKDIRWRKKPENSFLALS 175 (1324)
Q Consensus 102 VPLp~s~VshLAFSsDEs~LAVcaesGg~L~VYDV~SLlng~t~P~~sisLn~------st~VrdLaWNP~~aslLAVVS 175 (1324)
+.+ +++|-.|-|..|+...+|+.++ |.|.+|+..+..-. ..+ ...+.. +..|.++.---...-+|.++.
T Consensus 126 ~kl-~~kvv~Ik~~~~~~~I~vvl~n-G~i~~~d~~~~~l~-~~~--~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~ 200 (670)
T PF10395_consen 126 LKL-DDKVVGIKFSSDGKIIYVVLEN-GSIQIYDFSENSLE-KVP--QLKLKSSINVSYSKFVNDFELENGKDLLLTVSQ 200 (670)
T ss_pred EEc-ccceEEEEEecCCCEEEEEEcC-CcEEEEeccccccc-ccc--ccccccccceehhhhhcccccccCCceEEEEEE
Confidence 344 3678889999888877666655 68999998322211 111 111111 122222221011122444444
Q ss_pred -eCCeE--EEEEeC---CCceee----e----cceeEEEeccCCCEEEEEecCc-eEEEc-cCcccccccccCccccCCC
Q 000733 176 -NVGRL--YRGGVN---GPLEDV----M----DNVDAVEWSVKGKFVAVAKKNV-LSILT-SKLKERLPISLSFKSWVGD 239 (1324)
Q Consensus 176 -sDGsL--~Vldl~---e~lk~V----a----sgVScVcWSPKGKQLVVGlaDG-IsQyT-PDgeeKkvIP~Pf~S~I~D 239 (1324)
++..+ .++.+. .....+ . ..=.++|.. .|+-... .++ |..|+ |.++..++|..|. -|++
T Consensus 201 ~~~~k~~ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~-~G~LY~l--~~~~i~~ysip~f~~~~tI~l~~--ii~~ 275 (670)
T PF10395_consen 201 LSNSKLSYKLISLSNESSSIFELSSTILENFGLEDSKFCYQ-FGKLYQL--SKKTISSYSIPNFQIQKTISLPS--IIDK 275 (670)
T ss_pred cCCCcEEEEEEEeccCCcceEEeehheeccCCcccceEEEe-CCEEEEE--eCCEEEEEEcCCceEEEEEEech--hhcc
Confidence 33333 344552 111111 1 122356765 8876654 666 88887 7888889999882 1322
Q ss_pred CCCCCceeEEEEEEecCCeEEEEE
Q 000733 240 CDVNCSVKVDSIRWVRRDCIIIGC 263 (1324)
Q Consensus 240 ~d~d~sV~V~SI~WLeNd~yLFg~ 263 (1324)
.. -.+.|+.-.+++..+++.
T Consensus 276 ~~----~~~vSl~~~s~nRvLLs~ 295 (670)
T PF10395_consen 276 ES----DDLVSLKPPSPNRVLLSV 295 (670)
T ss_pred cc----ccceEeecCCCCeEEEEc
Confidence 11 246677777777666654
No 404
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.16 E-value=1.7e+03 Score=30.01 Aligned_cols=160 Identities=13% Similarity=0.159 Sum_probs=0.0
Q ss_pred CeeEEEEecCCCEEEEEeecCCeEEEEEcccccCCCCcceeEEecCCCcceEEEEecCCCCCeEEEEEeCCeEEEEEeCC
Q 000733 108 NVDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGGVNG 187 (1324)
Q Consensus 108 ~VshLAFSsDEs~LAVcaesGg~L~VYDV~SLlng~t~P~~sisLn~st~VrdLaWNP~~aslLAVVSsDGsL~Vldl~e 187 (1324)
.+..+.+|-||..++|.= .|.++||+..... ++++...--.-...|.+... ..+.+|+++.+|.+++.+-.+
T Consensus 85 ~lI~mgWs~~eeLI~v~k--~g~v~Vy~~~ge~---ie~~svg~e~~~~~I~ec~~---f~~GVavlt~~g~v~~i~~~~ 156 (829)
T KOG2280|consen 85 ELIGMGWSDDEELICVQK--DGTVHVYGLLGEF---IESNSVGFESQMSDIVECRF---FHNGVAVLTVSGQVILINGVE 156 (829)
T ss_pred CeeeecccCCceEEEEec--cceEEEeecchhh---hcccccccccccCceeEEEE---ecCceEEEecCCcEEEEcCCC
Q ss_pred Cceeee------------------------------------------------------cceeEEEeccCCCEEEEEec
Q 000733 188 PLEDVM------------------------------------------------------DNVDAVEWSVKGKFVAVAKK 213 (1324)
Q Consensus 188 ~lk~Va------------------------------------------------------sgVScVcWSPKGKQLVVGla 213 (1324)
..+.-. +.+.-+.-||.++.||.=..
T Consensus 157 ~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~ 236 (829)
T KOG2280|consen 157 EPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHALSWPNSSVVKISVSPNRRFLALYTE 236 (829)
T ss_pred cchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccccccCCCCceEEEEEEcCCcceEEEEec
Q ss_pred Cc-eEEEccCcccccccccCccccCCCCCCCCceeEEEEEEecCCeEEEEEEee----cCCCCcceeEE----EEEecCC
Q 000733 214 NV-LSILTSKLKERLPISLSFKSWVGDCDVNCSVKVDSIRWVRRDCIIIGCFQL----TEDGKEENYLV----QVIQSKD 284 (1324)
Q Consensus 214 DG-IsQyTPDgeeKkvIP~Pf~S~I~D~d~d~sV~V~SI~WLeNd~yLFg~vys----aeDgseEsYvV----~IIrkKd 284 (1324)
.| |.+-+-|+..+.. |.+-+....-..+.|..|+.-++.+... ..+|+...|++ +++...|
T Consensus 237 ~G~i~~vs~D~~~~lc----------e~~~~~~~~p~qm~WcgndaVvl~~e~~l~lvgp~gd~V~f~yd~t~~l~~E~D 306 (829)
T KOG2280|consen 237 TGKIWVVSIDLSQILC----------EFNCTDHDPPKQMAWCGNDAVVLSWEVNLMLVGPPGDSVQFYYDETAILSAEVD 306 (829)
T ss_pred CCcEEEEecchhhhhh----------ccCCCCCCchHhceeecCCceEEEEeeeEEEEcCCCCccccccCCCceeeeccC
Q ss_pred C
Q 000733 285 G 285 (1324)
Q Consensus 285 g 285 (1324)
|
T Consensus 307 G 307 (829)
T KOG2280|consen 307 G 307 (829)
T ss_pred e
No 405
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=20.15 E-value=1.5e+03 Score=26.87 Aligned_cols=137 Identities=8% Similarity=-0.026 Sum_probs=0.0
Q ss_pred CCeeEEEEecCCCEEEEE-----------eecCCeEEEEEcccccCCCCcceeEEec-CCCcceEEEEecCCCCCeEEEE
Q 000733 107 ENVDILSLSNDESTLAVS-----------LYQSPHIHFFSVHSLLNKEIKPSFSCSL-NGSTYVKDIRWRKKPENSFLAL 174 (1324)
Q Consensus 107 s~VshLAFSsDEs~LAVc-----------aesGg~L~VYDV~SLlng~t~P~~sisL-n~st~VrdLaWNP~~aslLAVV 174 (1324)
..+..|+|..+|.++++. ...+..|.+++-.. ++-..-....+ ++-...+.|++.++. +.|
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~d---gdG~~d~~~vfa~~l~~p~Gi~~~~~G----lyV 86 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDAD---GDGKYDKSNVFAEELSMVTGLAVAVGG----VYV 86 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCC---CCCCcceeEEeecCCCCccceeEecCC----EEE
Q ss_pred EeCCeEEEE-EeCC------CceeeecceeE-----------EEeccCCCEEEEEecC-------------------c-e
Q 000733 175 SNVGRLYRG-GVNG------PLEDVMDNVDA-----------VEWSVKGKFVAVAKKN-------------------V-L 216 (1324)
Q Consensus 175 SsDGsL~Vl-dl~e------~lk~VasgVSc-----------VcWSPKGKQLVVGlaD-------------------G-I 216 (1324)
++...|+.+ +... ..+.+..+... ++|.|+|+..++-... | |
T Consensus 87 ~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i 166 (367)
T TIGR02604 87 ATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGL 166 (367)
T ss_pred eCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceE
Q ss_pred EEEccCcccccccccCccccCCCCCCCCceeEEEEEEecCCeEEEE
Q 000733 217 SILTSKLKERLPISLSFKSWVGDCDVNCSVKVDSIRWVRRDCIIIG 262 (1324)
Q Consensus 217 sQyTPDgeeKkvIP~Pf~S~I~D~d~d~sV~V~SI~WLeNd~yLFg 262 (1324)
..|.|++.....+...+ -..-++.|-....++++
T Consensus 167 ~r~~pdg~~~e~~a~G~------------rnp~Gl~~d~~G~l~~t 200 (367)
T TIGR02604 167 FRYNPDGGKLRVVAHGF------------QNPYGHSVDSWGDVFFC 200 (367)
T ss_pred EEEecCCCeEEEEecCc------------CCCccceECCCCCEEEE
Done!