Query 000733
Match_columns 1324
No_of_seqs 144 out of 219
Neff 3.7
Searched_HMMs 29240
Date Tue Mar 26 15:50:12 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000733.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_506-510//hhsearch_pdb/000733hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1xip_A Nucleoporin NUP159; bet 1.0 1 1 514.8 37.5 359 16-432 10-386 (388)
2 2oit_A Nucleoporin 214KDA; NH2 1.0 1 1 425.8 42.2 399 14-447 8-427 (434)
3 2aq5_A Coronin-1A; WD40 repeat 1.0 1 1 89.3 18.8 189 48-263 36-238 (402)
4 4e54_B DNA damage-binding prot 1.0 1 1 87.9 14.5 139 106-262 119-267 (435)
5 3mkq_A Coatomer beta'-subunit; 1.0 1 1 85.1 17.8 108 106-221 55-170 (814)
6 2j04_A TAU60, YPL007P, hypothe 1.0 1 1 85.0 15.6 108 107-222 86-210 (588)
7 3dwl_C Actin-related protein 2 1.0 1 1 84.4 10.6 110 107-221 56-175 (377)
8 3ow8_A WD repeat-containing pr 1.0 1 1 82.9 22.4 144 100-263 74-224 (321)
9 2j04_A TAU60, YPL007P, hypothe 1.0 1 1 82.9 12.2 163 47-257 16-194 (588)
10 4gqb_B Methylosome protein 50; 1.0 1 1 82.8 21.4 140 107-262 83-231 (344)
No 1
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=1.00 E-value=1 Score=514.77 Aligned_cols=359 Identities=15% Similarity=0.144 Sum_probs=285.4
Q ss_pred CEEECCCCEEEECCCCCCCCCCCCCC-CCCCCCCCCCEEEECCCCEEEEEECCCCEEEEEEHHHHHHHHHCCCCCCCCCC
Q ss_conf 51211562122028865622489997-88999998655753785029999818815999705789897301458742334
Q 000733 16 GRIESNDFFFDEIGESIPIIRDDDSQ-FDLQNPPSLPLAVSQLSHQLIFAAHSSGFCVARTNDVIDAAKEMKENGTRCCV 94 (1324)
Q Consensus 16 EeIeTeDFgFK~Lgk~vsiLRLfss~-~dLP~~~sSLLAVSN~K~GLvfAAgpsGLvV~rTsDLr~a~ksaden~tv~~v 94 (1324)
||+.|+|||||++++ + ++|+.+ +++|..++++|||+| ++|++|+|++++++|++|++++++.....++ +.
T Consensus 10 ~~~~ted~~Fk~l~~-~---~~~~~~~~~l~~~~~nlLais~-~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~----~~ 80 (388)
T 1xip_A 10 PTETSEDFGFKFLGQ-K---QILPSFNEKLPFASLQNLDISN-SKSLFVAASGSKAVVGELQLLRDHITSDSTP----LT 80 (388)
T ss_dssp CEEEESSCEEEEEEE-E---ECSCCCTTCCCSSCCBCEEEET-TTTEEEEEETTEEEEEEHHHHHHHHHSSSCC----CC
T ss_pred CCEECCCCCEEECCC-C---CCCCCCCCCCCCCCCCEEEECC-CCCEEEEECCCEEEEEEHHHHHHHHCCCCCC----CC
T ss_conf 722426521488785-2---2136840139854221889818-7898999679989999806735553235556----55
Q ss_pred CCCEEEEECCCCCCEEEEEEECCCCEEEEEEECCCEEEEEECCCCCCCCCCCEEEEECCCCCCEEEEEECCCCCCEEEEE
Q ss_conf 64124431289888149999539988999942598299997231027997210688228983158877569999949999
Q 000733 95 QELSVVDVPFENENVDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLAL 174 (1324)
Q Consensus 95 ~dl~li~VPLp~s~VshLAFSsDEsvLAVcaesGG~I~VYDV~SLlng~t~Pl~sisLn~st~VrdLaWNP~~sslLAVV 174 (1324)
+. +.++++ . |+||+| |+.+|+|+. ++.|++||++++.++...+.+. ..+.+++|.+. .+|+|
T Consensus 81 ~~---~~~~lp-~-V~~l~f--d~~~L~v~~--~~~l~v~dv~sl~~~~~~~~~~------~~v~~i~~~~p---~~av~ 142 (388)
T 1xip_A 81 FK---WEKEIP-D-VIFVCF--HGDQVLVST--RNALYSLDLEELSEFRTVTSFE------KPVFQLKNVNN---TLVIL 142 (388)
T ss_dssp CS---EEEECT-T-EEEEEE--ETTEEEEEE--SSEEEEEESSSTTCEEEEEECS------SCEEEEEECSS---EEEEE
T ss_pred CE---EEEECC-C-EEEEEE--CCCEEEEEC--CCCEEEEECHHHHCCCCCCEEE------CCEEEEEECCC---CEEEE
T ss_conf 10---796079-8-359997--898999985--9958999963642668663150------35016774478---78999
Q ss_pred EECCEEEEEEECCC-CEEEECCEEEEEECCCCCEEEEEECCC-EEEECCCCCC---CCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 80880999980899-514414434898542797799993396-5998047643---321125865557877899843588
Q 000733 175 SNVGRLYRGGVNGP-LEDVMDNVDAVEWSVKGKFVAVAKKNV-LSILTSKLKE---RLPISLSFKSWVGDCDVNCSVKVD 249 (1324)
Q Consensus 175 SsDGsL~Vldl~e~-lk~IasgVTSVaWSPKGKQLVVGl~DG-IsQyTPDlee---KkvIP~Pf~S~IgD~d~d~sv~V~ 249 (1324)
++||.|++|++++. ...+..+|+|+|||||| +++|.+|| +.||+|++.+ |++|++|+. ++|. .++.++|.
T Consensus 143 ~~dG~L~v~dl~~~~~~~~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~--~~~~-~~~~~~V~ 217 (388)
T 1xip_A 143 NSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSE--LEEL-PVEEYSPL 217 (388)
T ss_dssp ETTSEEEEEETTTCCEEEEEESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHH--HHTS-CTTTSEEE
T ss_pred ECCCCEEEEECCCCCCCCCCCCCEEEEECCCC--EEEEECCCCEEEECCCCCCCCCCCEECCCCC--CCCC-CCCCEEEE
T ss_conf 79998999984688502136880499984886--0999848968997678864112312059820--0213-47880389
Q ss_pred EEEEECCCEEEEEEEEECCCCCCC---EEEEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCC---CCEEEEEE
Q ss_conf 988834874999997426999963---069999853898756889997277402443453358899888---65278843
Q 000733 250 SIRWVRRDCIIIGCFQLTEDGKEE---NYLVQVIQSKDGKITDASSEPVVLSFSDVFSDVIDDILPSGT---GPYLFLTY 323 (1324)
Q Consensus 250 SI~WLeNdsfLFa~v~steDgseE---sYvV~IIrkKdgk~~~~~ss~tf~~F~Di~~~~~DDi~PFGs---gP~~yla~ 323 (1324)
+|+|++|+.|+++|....++.+++ .+.++++++++ ..++|.+|+|+| +|||. .|+||+.+
T Consensus 218 sI~wl~~~~flv~y~~~~~~~~~~~~~~~~~~ii~~~~-------~~~~f~~~~d~~-------~~fg~~~R~~~~~~~~ 283 (388)
T 1xip_A 218 SVTILSPQDFLAVFGNVISETDDEVSYDQKMYIIKHID-------GSASFQETFDIT-------PPFGQIVRFPYMYKVT 283 (388)
T ss_dssp EEEESSSSEEEEEEECCCCSSCSSCCCCEEEEEEEEET-------TEEEEEEESSSC-------CCCCCSCCCCCEEEEE
T ss_pred EEEEECCCEEEEEECCCCCCCCCCCCCCCEEEEEECCC-------CCCEEECCCCCC-------CCCCCCCCCCEEEEEE
T ss_conf 99992697099998278877675567761499997689-------972467255676-------7767766770322143
Q ss_pred ECCC-----CEEEEEECCCCCCEEEEEEECCCCCCCCCEEEECCCCCCCCEEECCCC-CCCCCEEEEEEEECCCCCEEEE
Q ss_conf 0461-----199997067642146774302666777621662158876613307899-9984014999971378862211
Q 000733 324 VERW-----GLAISANRKNIDDHVVLLRWSLDDEKNDIAVVDINRDKWIPRIKLQDN-GNDNLIMGLCIDKVSLCGKVKV 397 (1324)
Q Consensus 324 L~dW-----dLLIVASSaSTDIgIL~~~W~l~D~~~~~~vlEi~DDS~RAeLPLTED-~DDTsPIGLALDLSSte~kVev 397 (1324)
|++| +|+|++|++|+||+||.. . .++.++||++||+|||+++ ++||+|||||||+++++ ++..
T Consensus 284 l~~w~~~~~~l~iv~Ss~S~di~il~~-------~---~~~~~~~Ds~Ra~lPl~~~~~~Dt~piG~alD~ss~~-~v~~ 352 (388)
T 1xip_A 284 LSGLIEPDANVNVLASSCSSEVSIWDS-------K---QVIEPSQDSERAVLPISEETDKDTNPIGVAVDVVTSG-TILE 352 (388)
T ss_dssp EEEEEETTEEEEEEEETTCSBCEEECS-------S---SEEEESSGGGCCBCCBCTTTCCBCCEEEEEEECSCCC-----
T ss_pred HHCCCCCCCCEEEEECCCCCCEEEECC-------C---CEEEECCCCCCCEECCCCCCCCCCCCEEEEEECCCCC-EECC
T ss_conf 300256678689995778764488246-------5---3794417656526536778899872259999823675-3237
Q ss_pred CCCCCCCCCCCCEEEEEECCCCCEEEEEEEECCCC
Q ss_conf 17887445797329999838852989999842699
Q 000733 398 QLGVEEKELSPYFILMCLTLDGKLNMFHVASVSGP 432 (1324)
Q Consensus 398 pIg~DE~eLPPlPiLlVLTsEGvL~sw~VVnL~~~ 432 (1324)
|++++|. .+|+|+||||||||+|++|||+|.+..
T Consensus 353 p~~g~e~-~~plP~l~~L~~~G~L~~~~~~~~~~i 386 (388)
T 1xip_A 353 PCSGVDT-IERLPLVYILNNEGSLQIVGLFHVAAI 386 (388)
T ss_dssp -----------CCEEEEEETTSEEEEEEEEC----
T ss_pred CCCCCCC-CCCCCEEEEECCCCEEEEEEEECHHHH
T ss_conf 8887333-798888999969854999987716654
No 2
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=1.00 E-value=1 Score=425.83 Aligned_cols=399 Identities=23% Similarity=0.309 Sum_probs=299.5
Q ss_pred CCCEEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCEEEEEECCCCEEEEEEHHHHHHHHHCCC-CCCCC
Q ss_conf 35512115621220288656224899978899999865575378502999981881599970578989730145-87423
Q 000733 14 EGGRIESNDFFFDEIGESIPIIRDDDSQFDLQNPPSLPLAVSQLSHQLIFAAHSSGFCVARTNDVIDAAKEMKE-NGTRC 92 (1324)
Q Consensus 14 egEeIeTeDFgFK~Lgk~vsiLRLfss~~dLP~~~sSLLAVSN~K~GLvfAAgpsGLvV~rTsDLr~a~ksade-n~tv~ 92 (1324)
|-+|.+++||+||++++ + |+++.+.++|.+..++||+++ +.|++++|+.++++|+.+.+++......+. .....
T Consensus 8 ~~~e~~~~~~~F~~~~~-v---ri~~~~~~~~~~~~n~lavs~-~~~~l~~~~~dgv~v~~~~~~~~~~~~~~~~~~~~~ 82 (434)
T 2oit_A 8 MIPEREMKDFQFRALKK-V---RIFDSPEELPKERSSLLAVSN-KYGLVFAGGASGLQIFPTKNLLIQNKPGDDPNKIVD 82 (434)
T ss_dssp CCCEEEESSEEEEECCE-E---ECSCCCSSCCCSCCBCEEEET-TTTEEEEEETTEEEEEEHHHHCCCCCTTCCTTCEEE
T ss_pred CCCCCCCCCCEEEEEEE-E---EECCCCCCCCCCCCCEEEEEC-CCCEEEEECCCEEEEEECHHHHHHCCCCCCCCCCCC
T ss_conf 35623566202424236-9---854773346788755899966-788799978997999983675320124557551133
Q ss_pred CCCCCEEEEECCCCCCEEEEEEECCCCEEEEEE---ECCCEEEEEECCCCCCC---CCCCEEEEEC--CCCCCEEEEEEC
Q ss_conf 346412443128988814999953998899994---25982999972310279---9721068822--898315887756
Q 000733 93 CVQELSVVDVPFENENVDILSLSNDESTLAVSL---YQSPHIHFFSVHSLLNK---EIKPSFSCSL--NGSTYVKDIRWR 164 (1324)
Q Consensus 93 ~v~dl~li~VPLp~s~VshLAFSsDEsvLAVca---esGG~I~VYDV~SLlng---~t~Pl~sisL--n~st~VrdLaWN 164 (1324)
+.+. ..++++ ..|..|+|++|+.+|+|+. ..++.|++||+.+...+ ..+++..+.+ ++...|.+++|+
T Consensus 83 ~~~~---~~~~~~-~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~ 158 (434)
T 2oit_A 83 KVQG---LLVPMK-FPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWN 158 (434)
T ss_dssp CCCC---EEECCS-SCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEEC
T ss_pred CCCC---CCCCCC-CCCCEEEECCCCCEEEEEEECCCCCCEEEEEECCCCCCCCCCCCCEEEEEECCCCCCCCEEEEEEC
T ss_conf 6865---252688-860379975899979999713579966999980333467767764035663147888756899978
Q ss_pred CCCCCEEEEEEECCEEEEEEECCCCEEE-----ECCEEEEEECCCCCEEEEEECCC-EEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 9999949999808809999808995144-----14434898542797799993396-59980476433211258655578
Q 000733 165 KKPENSFLALSNVGRLYRGGVNGPLEDV-----MDNVDAVEWSVKGKFVAVAKKNV-LSILTSKLKERLPISLSFKSWVG 238 (1324)
Q Consensus 165 P~~sslLAVVSsDGsL~Vldl~e~lk~I-----asgVTSVaWSPKGKQLVVGl~DG-IsQyTPDleeKkvIP~Pf~S~Ig 238 (1324)
|...++||.++.||++++||+....... ...|.|+||||+|++|++|..|| |.+|.+.++.++.+++++.
T Consensus 159 p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~~~~~~~~~~~~~---- 234 (434)
T 2oit_A 159 PTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPTLQEKKVIPCPPF---- 234 (434)
T ss_dssp SSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTTCCEEEEECCCTT----
T ss_pred CCCCCEEEEEECCCEEEEEECCCCCCEEECCCCCCCEEEEEECCCCCEEEEECCCCCEEEECCCCCCCCCCCCCCC----
T ss_conf 9999879999799929998857885225416877862489976889989997489948997668862221368854----
Q ss_pred CCCCCCCEEEEEEEEECCCEEEEEEEEECCCCCCC---EEEEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCC
Q ss_conf 77899843588988834874999997426999963---069999853898756889997277402443453358899888
Q 000733 239 DCDVNCSVKVDSIRWVRRDCIIIGCFQLTEDGKEE---NYLVQVIQSKDGKITDASSEPVVLSFSDVFSDVIDDILPSGT 315 (1324)
Q Consensus 239 D~d~d~sv~V~SI~WLeNdsfLFa~v~steDgseE---sYvV~IIrkKdgk~~~~~ss~tf~~F~Di~~~~~DDi~PFGs 315 (1324)
...++...|.+|.|..+..|++++. +.|+..+ .+.++.++++++ ..++.|.+|.|+|+++.. .+
T Consensus 235 -~~~~~~~~v~~v~w~~~~~~l~~~~--~~dg~~~~~~~v~i~~l~~~~~-----~~~~~~~~~~~~~~~~~~-----~r 301 (434)
T 2oit_A 235 -YESDHPVRVLDVLWIGTYVFAIVYA--AADGTLETSPDVVMALLPKKEE-----KHPEIFVNFMEPCYGSCT-----ER 301 (434)
T ss_dssp -CCTTSCEEEEEEEEEETTEEEEEEE--ETTCCSSSCCEEEEEECCCTTT-----CCCCEEEECCCSSCCCCS-----SS
T ss_pred -CCCCCCEEEEEEEEECCCEEEEEEC--CCCCCCCCCCCEEEEEECCCCC-----CCCCCEEECCCCCCCCCC-----CC
T ss_conf -5788860377999806846999983--5777667887369998335787-----798522742567788777-----76
Q ss_pred CCEEEEEEECCCCEEEEEECCCCCCEEEEEEECCCCCCCCCEEEECCCCCCCCEEECCCCCCCCCEEEEEEEECCCCCEE
Q ss_conf 65278843046119999706764214677430266677762166215887661330789999840149999713788622
Q 000733 316 GPYLFLTYVERWGLAISANRKNIDDHVVLLRWSLDDEKNDIAVVDINRDKWIPRIKLQDNGNDNLIMGLCIDKVSLCGKV 395 (1324)
Q Consensus 316 gP~~yla~L~dWdLLIVASSaSTDIgIL~~~W~l~D~~~~~~vlEi~DDS~RAeLPLTED~DDTsPIGLALDLSSte~kV 395 (1324)
.|+||+.+|++|+++|++|++|+||+||... .| +.. ..+.+++|++||+|||+++++||+|||||+|+++++ .
T Consensus 302 ~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~~---~~-~~~-~~~~~~~d~~ra~lP~~~~~~dt~piG~~~d~~~~~-~- 374 (434)
T 2oit_A 302 QHHYYLSYIEEWDLVLAASAASTEVSILARQ---SD-QIN-WESWLLEDSSRAELPVTDKSDDSLPMGVVVDYTNQV-E- 374 (434)
T ss_dssp CCCEEEEEEGGGTEEEEEETTCSBCEEEEEC---TT-SSC-EEEEEECGGGCCBCCBCTTSCBCCEEEEEEECCCCC-C-
T ss_pred CCCEEEEHHCCCCEEEEECCCCCCEEEEEEC---CC-CCC-CEEEECCCCCCCCCCCCCCCCCCEEEEEEEECCCCC-E-
T ss_conf 7001122110488999956888721699714---99-986-379861666642525777888712138999846874-1-
Q ss_pred EECCCCCCCCCCCCEEEEEECCCCCEEEEEEEECCC---CCCCCCCCCCCCCCCC
Q ss_conf 111788744579732999983885298999984269---9899885556777765
Q 000733 396 KVQLGVEEKELSPYFILMCLTLDGKLNMFHVASVSG---PSCSPDVDFTLSDAED 447 (1324)
Q Consensus 396 evpIg~DE~eLPPlPiLlVLTsEGvL~sw~VVnL~~---~~~~p~~~~~~~~~~~ 447 (1324)
++++ ++..+||+|+||||||||+|++|||+|++. ....|+..++..+++.
T Consensus 375 -v~~~-~~~~~~p~P~l~~l~~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (434)
T 2oit_A 375 -ITIS-DEKTLPPAPVLMLLSTDGVLCPFYMINQNPGVKSLIKTPERLSLEGERQ 427 (434)
T ss_dssp -EEEE-TTEEECCCCEEEEEETTSEEEEEEEEECSTTCCCCCCCCCCCCCTTCCC
T ss_pred -EECC-CCCCCCCCCEEEEECCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCC
T ss_conf -3448-6444799788999878877999998826866666566986647555648
No 3
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=1.00 E-value=1 Score=89.33 Aligned_cols=189 Identities=12% Similarity=0.081 Sum_probs=124.5
Q ss_pred CCCCEEEECCCCEEEEEE-CCCC-EEEEEEHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCEEEEEEEC-CCCEEEEE
Q ss_conf 986557537850299998-1881-59997057898973014587423346412443128988814999953-99889999
Q 000733 48 PSLPLAVSQLSHQLIFAA-HSSG-FCVARTNDVIDAAKEMKENGTRCCVQELSVVDVPFENENVDILSLSN-DESTLAVS 124 (1324)
Q Consensus 48 ~sSLLAVSN~K~GLvfAA-gpsG-LvV~rTsDLr~a~ksaden~tv~~v~dl~li~VPLp~s~VshLAFSs-DEsvLAVc 124 (1324)
..+.++.+. ++..+++. +.+| +.|..... ... . .... ..+..+...|..++|+. |+.+|+++
T Consensus 36 ~~~~~~~~~-~~~~~~~~~~~~g~i~v~~~~~------~~~---~---~~~~--~~~~~h~~~V~~~~~~p~~~~~l~s~ 100 (402)
T 2aq5_A 36 DSGFCAVNP-KFMALICEASGGGAFLVLPLGK------TGR---V---DKNV--PLVCGHTAPVLDIAWCPHNDNVIASG 100 (402)
T ss_dssp SSCSEEECS-SEEEEEBCCSSSCCEEEEETTC------CEE---C---CTTC--CCBCCCSSCEEEEEECTTCTTEEEEE
T ss_pred CCCCEEECC-CEEEEEEEECCCCEEEEEECCC------CCC---C---CCCC--CEEECCCCCEEEEEECCCCCCEEEEE
T ss_conf 788189779-7289999884998899998965------787---8---7877--44814899787899688999989999
Q ss_pred EECCCEEEEEECCCCCCC--CCCCEEEEECCCCCCEEEEEECCCCCCEEEEEEECCEEEEEEECCCC--EE-----EECC
Q ss_conf 425982999972310279--97210688228983158877569999949999808809999808995--14-----4144
Q 000733 125 LYQSPHIHFFSVHSLLNK--EIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGGVNGPL--ED-----VMDN 195 (1324)
Q Consensus 125 aesGG~I~VYDV~SLlng--~t~Pl~sisLn~st~VrdLaWNP~~sslLAVVSsDGsL~Vldl~e~l--k~-----Iasg 195 (1324)
.. ++.|.+|++...... ...+...+.- +...|..+.|+|+....++.+..||.+.+|++.... .. ....
T Consensus 101 s~-dg~v~vw~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 178 (402)
T 2aq5_A 101 SE-DCTVMVWEIPDGGLVLPLREPVITLEG-HTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDT 178 (402)
T ss_dssp ET-TSEEEEEECCTTCCSSCBCSCSEEEEC-CSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSC
T ss_pred EC-CCEEEEEECCCCCCCCCCCCCEEEECC-CCCEEEEEEECCCCCCEEEEECCCCEEEEEECCCCCCCEEEECCCCCCC
T ss_conf 49-982999972699976545773189548-8870899997828998899972899899998999970079705788984
Q ss_pred EEEEEECCCCCEEEEEECCC-EEEECCC-CCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCEEEEEE
Q ss_conf 34898542797799993396-5998047-64332112586555787789984358898883487499999
Q 000733 196 VDAVEWSVKGKFVAVAKKNV-LSILTSK-LKERLPISLSFKSWVGDCDVNCSVKVDSIRWVRRDCIIIGC 263 (1324)
Q Consensus 196 VTSVaWSPKGKQLVVGl~DG-IsQyTPD-leeKkvIP~Pf~S~IgD~d~d~sv~V~SI~WLeNdsfLFa~ 263 (1324)
|.|++|+|+|+.|++|..|| |.+|... ++....+...+ ....+..+.|..+..++++.
T Consensus 179 v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~l~~g 238 (402)
T 2aq5_A 179 IYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPH----------EGTRPVHAVFVSEGKILTTG 238 (402)
T ss_dssp EEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSS----------CSSSCCEEEECSTTEEEEEE
T ss_pred EEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCC----------CCCCCEEEEECCCCCEEEEE
T ss_conf 4898987899989998069967999689993334513687----------89860389990899699994
No 4
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=1.00 E-value=1 Score=87.91 Aligned_cols=139 Identities=14% Similarity=0.072 Sum_probs=97.7
Q ss_pred CCCEEEEEEEC-CCCEEEEEEECCCEEEEEECCCCCCCCCCCEEEEEC-CCCCCEEEEEECCCCCCEEEEEEECCEEEEE
Q ss_conf 88814999953-998899994259829999723102799721068822-8983158877569999949999808809999
Q 000733 106 NENVDILSLSN-DESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSL-NGSTYVKDIRWRKKPENSFLALSNVGRLYRG 183 (1324)
Q Consensus 106 ~s~VshLAFSs-DEsvLAVcaesGG~I~VYDV~SLlng~t~Pl~sisL-n~st~VrdLaWNP~~sslLAVVSsDGsL~Vl 183 (1324)
+..|+.|+|++ ++.+||++.. +|.|.+||+..-. ... .+.. ++...|.++.|+|...+.|+.++.||++.+|
T Consensus 119 ~~~V~~l~~~P~~~~~lasGs~-dg~i~lWd~~~~~---~~~--~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iw 192 (435)
T 4e54_B 119 DRRATSLAWHPTHPSTVAVGSK-GGDIMLWNFGIKD---KPT--FIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQ 192 (435)
T ss_dssp SSCEEEEEECSSCTTCEEEEET-TSCEEEECSSCCS---CCE--EECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEE
T ss_pred CCCEEEEEEECCCCCEEEEEEC-CCEEEEEECCCCC---CEE--EEECCCCCCCEEEEEEECCCCCEEEEEECCCEEEEE
T ss_conf 9989999991899999999918-8979999798997---136--897368999888999907999999999589979996
Q ss_pred EECCCC-EEE------ECCEEEEEECCCCCEEEEEECCC-EEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEC
Q ss_conf 808995-144------14434898542797799993396-5998047643321125865557877899843588988834
Q 000733 184 GVNGPL-EDV------MDNVDAVEWSVKGKFVAVAKKNV-LSILTSKLKERLPISLSFKSWVGDCDVNCSVKVDSIRWVR 255 (1324)
Q Consensus 184 dl~e~l-k~I------asgVTSVaWSPKGKQLVVGl~DG-IsQyTPDleeKkvIP~Pf~S~IgD~d~d~sv~V~SI~WLe 255 (1324)
|+.... ..+ ...+.|++|+|+|+.|++|..|| |.+|..+++....+.. ..-.|.+|.|..
T Consensus 193 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~~~~~~~------------h~~~v~~v~~~p 260 (435)
T 4e54_B 193 DFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELWNLRM------------HKKKVTHVALNP 260 (435)
T ss_dssp ETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCBCCCSBC------------CSSCEEEEEECT
T ss_pred ECCCCCEEEEECCCCCCCCEEEEEECCCCCEEEEEECCCCEEEECCCCCEEEEEEC------------CCCEEEEEEECC
T ss_conf 45677225886167777537999989999999999589967663267505689841------------343377533337
Q ss_pred CCEEEEE
Q ss_conf 8749999
Q 000733 256 RDCIIIG 262 (1324)
Q Consensus 256 NdsfLFa 262 (1324)
....+|+
T Consensus 261 ~~~~~~~ 267 (435)
T 4e54_B 261 CCDWFLA 267 (435)
T ss_dssp TCSSEEE
T ss_pred CCCEEEE
T ss_conf 7744999
No 5
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=1.00 E-value=1 Score=85.11 Aligned_cols=108 Identities=10% Similarity=0.010 Sum_probs=67.1
Q ss_pred CCCEEEEEEECCCCEEEEEEECCCEEEEEECCCCCCCCCCCEEEEECCCCCCEEEEEECCCCCCEEEEEEECCEEEEEEE
Q ss_conf 88814999953998899994259829999723102799721068822898315887756999994999980880999980
Q 000733 106 NENVDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGGV 185 (1324)
Q Consensus 106 ~s~VshLAFSsDEsvLAVcaesGG~I~VYDV~SLlng~t~Pl~sisLn~st~VrdLaWNP~~sslLAVVSsDGsL~Vldl 185 (1324)
...|..++|++|+.+|+++.. ++.|.+|++.+. +....+.. +...|+.+.|+|+.. .+++++.||.+.+|++
T Consensus 55 ~~~v~~~~~s~~~~~l~~~~~-dg~i~vw~~~~~-----~~~~~~~~-~~~~v~~~~~s~~~~-~l~~~~~dg~i~vw~~ 126 (814)
T 3mkq_A 55 ETPVRAGKFIARKNWIIVGSD-DFRIRVFNYNTG-----EKVVDFEA-HPDYIRSIAVHPTKP-YVLSGSDDLTVKLWNW 126 (814)
T ss_dssp SSCEEEEEEEGGGTEEEEEET-TSEEEEEETTTC-----CEEEEEEC-CSSCEEEEEECSSSS-EEEEEETTSEEEEEEG
T ss_pred CCCEEEEEEECCCCEEEEEEC-CCEEEEEECCCC-----CEEEEEEC-CCCCEEEEEEECCCC-EEEEECCCCEEEEEEC
T ss_conf 996889999689998999928-994999989999-----58799816-899789999958999-8999928998999989
Q ss_pred CCCCE---EE---ECCEEEEEECC-CCCEEEEEECCC-EEEECC
Q ss_conf 89951---44---14434898542-797799993396-599804
Q 000733 186 NGPLE---DV---MDNVDAVEWSV-KGKFVAVAKKNV-LSILTS 221 (1324)
Q Consensus 186 ~e~lk---~I---asgVTSVaWSP-KGKQLVVGl~DG-IsQyTP 221 (1324)
..... .+ ...|.|++|+| +|+.|++|..|| |.+|..
T Consensus 127 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~ 170 (814)
T 3mkq_A 127 ENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL 170 (814)
T ss_dssp GGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEET
T ss_pred CCCCEEEEEECCCCCCEEEEEEECCCCCEEEEEECCCEEEEEEC
T ss_conf 99954879983799868899997699999999948894999989
No 6
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=84.96 Aligned_cols=108 Identities=16% Similarity=0.109 Sum_probs=56.6
Q ss_pred CCEEEEEEECCCCEEEEEEECCCEEEEEECCCCCCCCCCCEEEEECCCCCCEEEEEECCCCCCEEEEEEECCEEEEEEEC
Q ss_conf 88149999539988999942598299997231027997210688228983158877569999949999808809999808
Q 000733 107 ENVDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGGVN 186 (1324)
Q Consensus 107 s~VshLAFSsDEsvLAVcaesGG~I~VYDV~SLlng~t~Pl~sisLn~st~VrdLaWNP~~sslLAVVSsDGsL~Vldl~ 186 (1324)
..|..++||+|+..||++... |.|.+|+...++..-. ....+. +..+++++|+|+.. .+|+.+.||++.+|++.
T Consensus 86 ~~V~~vawSPdG~~LAs~s~d-g~V~iwd~~~~l~~l~---~~~~~~-~~sv~svafSPDG~-~LAsgs~DGtVkIWd~~ 159 (588)
T 2j04_A 86 CYPRVCKPSPIDDWMAVLSNN-GNVSVFKDNKMLTNLD---SKGNLS-SRTYHCFEWNPIES-SIVVGNEDGELQFFSIR 159 (588)
T ss_dssp CCEEEEEECSSSSCEEEEETT-SCEEEEETTEEEEECC---CSSCST-TTCEEEEEECSSSS-CEEEEETTSEEEEEECC
T ss_pred CCEEEEEECCCCCEEEEEECC-CCEEEEECCCEEEECC---CCCCCC-CCCEEEEEECCCCC-EEEEECCCCEEEEEECC
T ss_conf 858999988999879999189-8299995776156506---887656-66278999958999-89998089979999899
Q ss_pred CCC---------EEE-------ECCEEEEEECCCCCEEEEEECCC-EEEECCC
Q ss_conf 995---------144-------14434898542797799993396-5998047
Q 000733 187 GPL---------EDV-------MDNVDAVEWSVKGKFVAVAKKNV-LSILTSK 222 (1324)
Q Consensus 187 e~l---------k~I-------asgVTSVaWSPKGKQLVVGl~DG-IsQyTPD 222 (1324)
.+. ..+ ...|.|++|||+| |+++..|+ +..|..+
T Consensus 160 ~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~ 210 (588)
T 2j04_A 160 KNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVS 210 (588)
T ss_dssp CCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCC
T ss_pred CCCCCCCCCEEEEEEECCCCCCCCCEEEEEECCCC--EEEEECCCEEEEEECC
T ss_conf 98645543203466403565653667899986996--7999189859999898
No 7
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=1.00 E-value=1 Score=84.41 Aligned_cols=110 Identities=8% Similarity=0.101 Sum_probs=64.8
Q ss_pred CCEEEEEEECCCCEEEEEEECCCEEEEEECCCCCCCCCCCEEEEECCCCCCEEEEEECCCCCCEEEEEEECCEEEEEEEC
Q ss_conf 88149999539988999942598299997231027997210688228983158877569999949999808809999808
Q 000733 107 ENVDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGGVN 186 (1324)
Q Consensus 107 s~VshLAFSsDEsvLAVcaesGG~I~VYDV~SLlng~t~Pl~sisLn~st~VrdLaWNP~~sslLAVVSsDGsL~Vldl~ 186 (1324)
..|..++|+.|+.+|+++.. ++.|.+||+.... ...+...+. .+...|.++.|+|+.. .+++++.||.+++|++.
T Consensus 56 ~~v~~~~~s~~~~~l~s~s~-d~~v~vwd~~~~~--~~~~~~~~~-~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~ 130 (377)
T 3dwl_C 56 KIVTCVDWAPKSNRIVTCSQ-DRNAYVYEKRPDG--TWKQTLVLL-RLNRAATFVRWSPNED-KFAVGSGARVISVCYFE 130 (377)
T ss_dssp SCEEEEEECTTTCCEEEEET-TSSEEEC--------CCCCEEECC-CCSSCEEEEECCTTSS-CCEEEESSSCEEECCC-
T ss_pred CEEEEEEEECCCCEEEEEEC-CCEEEEEECCCCC--CEEEEEEEC-CCCCCEEEEEECCCCC-EEEEEECCCEEEEEEEC
T ss_conf 62999999289998999908-9829999727777--231235750-5688567999899899-89998069719999977
Q ss_pred CC-----CEE----EECCEEEEEECCCCCEEEEEECCC-EEEECC
Q ss_conf 99-----514----414434898542797799993396-599804
Q 000733 187 GP-----LED----VMDNVDAVEWSVKGKFVAVAKKNV-LSILTS 221 (1324)
Q Consensus 187 e~-----lk~----IasgVTSVaWSPKGKQLVVGl~DG-IsQyTP 221 (1324)
.. ... ....|.|++|+|+|+.|++|..|| |.+|..
T Consensus 131 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 175 (377)
T 3dwl_C 131 QENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSA 175 (377)
T ss_dssp ----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEE
T ss_pred CCCCCEEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEEE
T ss_conf 866432546762466897389998699977999807987999998
No 8
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=1.00 E-value=1 Score=82.94 Aligned_cols=144 Identities=13% Similarity=0.138 Sum_probs=98.5
Q ss_pred EEECCCCCCEEEEEEECCCCEEEEEEECCCEEEEEECCCCCCCCCCCEEEEECCCCCCEEEEEECCCCCCEEEEEEECCE
Q ss_conf 43128988814999953998899994259829999723102799721068822898315887756999994999980880
Q 000733 100 VDVPFENENVDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGR 179 (1324)
Q Consensus 100 i~VPLp~s~VshLAFSsDEsvLAVcaesGG~I~VYDV~SLlng~t~Pl~sisLn~st~VrdLaWNP~~sslLAVVSsDGs 179 (1324)
+.+......|..++|+.++.+|+.+.. ++.|.+||+.+. +....+... ...+..+.|+|+.. .+|+.+.||.
T Consensus 74 ~~l~gh~~~v~~~~~~~~~~~l~s~s~-D~~i~lWd~~~~-----~~~~~~~~~-~~~~~~~~~spdg~-~l~~g~~dg~ 145 (321)
T 3ow8_A 74 WSLEGHQLGVVSVDISHTLPIAASSSL-DAHIRLWDLENG-----KQIKSIDAG-PVDAWTLAFSPDSQ-YLATGTHVGK 145 (321)
T ss_dssp EEECCCSSCEEEEEECSSSSEEEEEET-TSEEEEEETTTT-----EEEEEEECC-TTCCCCEEECTTSS-EEEEECTTSE
T ss_pred EEECCCCCCEEEEEECCCCCEEEEEEC-CCCEEEEECCCC-----CEEEEEECC-CCCEEEEEECCCCC-EEEEECCCCC
T ss_conf 600567788899998899998999937-980999978999-----798999379-85679999999999-8999838991
Q ss_pred EEEEEECCCCEEE-----ECCEEEEEECCCCCEEEEEECCC-EEEECCC-CCCCCCCCCCCCCCCCCCCCCCCEEEEEEE
Q ss_conf 9999808995144-----14434898542797799993396-5998047-643321125865557877899843588988
Q 000733 180 LYRGGVNGPLEDV-----MDNVDAVEWSVKGKFVAVAKKNV-LSILTSK-LKERLPISLSFKSWVGDCDVNCSVKVDSIR 252 (1324)
Q Consensus 180 L~Vldl~e~lk~I-----asgVTSVaWSPKGKQLVVGl~DG-IsQyTPD-leeKkvIP~Pf~S~IgD~d~d~sv~V~SI~ 252 (1324)
+.+|++....... ...+.|++|||+|+.|++|..|| |.+|... ++....+.. ....|.++.
T Consensus 146 v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~------------h~~~v~~l~ 213 (321)
T 3ow8_A 146 VNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEG------------HAMPIRSLT 213 (321)
T ss_dssp EEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC------------CSSCCCEEE
T ss_pred EEEEECCCCCEEEEECCCCCEEEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEEECC------------CCCCEEEEE
T ss_conf 99998679946677438994299999989999999992898399999999909999802------------589601899
Q ss_pred EECCCEEEEEE
Q ss_conf 83487499999
Q 000733 253 WVRRDCIIIGC 263 (1324)
Q Consensus 253 WLeNdsfLFa~ 263 (1324)
|-.+..+++..
T Consensus 214 ~spd~~~l~s~ 224 (321)
T 3ow8_A 214 FSPDSQLLVTA 224 (321)
T ss_dssp ECTTSCEEEEE
T ss_pred ECCCCCEEEEE
T ss_conf 94899989999
No 9
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=82.91 Aligned_cols=163 Identities=14% Similarity=0.097 Sum_probs=97.5
Q ss_pred CCCCCEEEECCCCEEEEEECCCCEEEEEEHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCEEEEEEECCCCEEEEEEE
Q ss_conf 99865575378502999981881599970578989730145874233464124431289888149999539988999942
Q 000733 47 PPSLPLAVSQLSHQLIFAAHSSGFCVARTNDVIDAAKEMKENGTRCCVQELSVVDVPFENENVDILSLSNDESTLAVSLY 126 (1324)
Q Consensus 47 ~~sSLLAVSN~K~GLvfAAgpsGLvV~rTsDLr~a~ksaden~tv~~v~dl~li~VPLp~s~VshLAFSsDEsvLAVcae 126 (1324)
.-..-++.|. .-.+++-|+.++.+. + +. . .. + + ..+...|.+|+|++|+ .
T Consensus 16 ~~v~sv~~Sp-DG~~iASas~D~TV~----d-------~~---~---~~--~-l--~gh~~~v~~V~FsPdg------~- 65 (588)
T 2j04_A 16 DWKNNLTWAR-DGTLYLTTFPDISIG----Q-------PK---Y---AK--D-I--NCNSKNLFHVKEFPLE------F- 65 (588)
T ss_dssp SSSCCEEECT-TSCEEEECSSSEEEE----E-------EC---C---CS--C-C--SSBGGGTEEEEEECCC------C-
T ss_pred CCEEEEEECC-CCCEEEEECCCCEEE----C-------CC---C---CC--E-E--CCCCCCEEEEEECCCC------C-
T ss_conf 6379999999-998999974885000----6-------66---4---32--0-1--1787607999978988------7-
Q ss_pred CCCEEEEEECCCCCCCCCCCEEEEECCCCCCEEEEEECCCCCCEEEEEEECCEEEEEEECCCCEEE-E------CCEEEE
Q ss_conf 598299997231027997210688228983158877569999949999808809999808995144-1------443489
Q 000733 127 QSPHIHFFSVHSLLNKEIKPSFSCSLNGSTYVKDIRWRKKPENSFLALSNVGRLYRGGVNGPLEDV-M------DNVDAV 199 (1324)
Q Consensus 127 sGG~I~VYDV~SLlng~t~Pl~sisLn~st~VrdLaWNP~~sslLAVVSsDGsL~Vldl~e~lk~I-a------sgVTSV 199 (1324)
.+. |++..... .... .+.+...|.+++|+|+.. .+|+++.||.+++|+....+..+ . ..|.|+
T Consensus 66 -~~~---~~~~~~~~---~~~~--~~~~~~~V~~vawSPdG~-~LAs~s~dg~V~iwd~~~~l~~l~~~~~~~~~sv~sv 135 (588)
T 2j04_A 66 -ENK---LDFELAQQ---NGLL--NSQPVCYPRVCKPSPIDD-WMAVLSNNGNVSVFKDNKMLTNLDSKGNLSSRTYHCF 135 (588)
T ss_dssp -CCT---TTTSCCCS---SCSS--TTSCSCCEEEEEECSSSS-CEEEEETTSCEEEEETTEEEEECCCSSCSTTTCEEEE
T ss_pred -CCE---EEEEECCC---CEEE--ECCCCCCEEEEEECCCCC-EEEEEECCCCEEEEECCCEEEECCCCCCCCCCCEEEE
T ss_conf -666---99980887---1676--238988589999889998-7999918982999957761565068876566627899
Q ss_pred EECCCCCEEEEEECCC-EEEECCCCCC--------CCCCCCCCCCCCCCCCCCCCEEEEEEEEECCC
Q ss_conf 8542797799993396-5998047643--------32112586555787789984358898883487
Q 000733 200 EWSVKGKFVAVAKKNV-LSILTSKLKE--------RLPISLSFKSWVGDCDVNCSVKVDSIRWVRRD 257 (1324)
Q Consensus 200 aWSPKGKQLVVGl~DG-IsQyTPDlee--------KkvIP~Pf~S~IgD~d~d~sv~V~SI~WLeNd 257 (1324)
||||+|+.||+|..|| |.+|...... ..++..- ..+..-.|.+|.|-.+.
T Consensus 136 afSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~--------~~gh~~~V~sVawSPdg 194 (588)
T 2j04_A 136 EWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLS--------DAGSKDWVTHIVWYEDV 194 (588)
T ss_dssp EECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECS--------CTTCCCCEEEEEEETTE
T ss_pred EECCCCCEEEEECCCCEEEEEECCCCCCCCCCCEEEEEEECC--------CCCCCCCEEEEEECCCC
T ss_conf 995899989998089979999899986455432034664035--------65653667899986996
No 10
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=1.00 E-value=1 Score=82.79 Aligned_cols=140 Identities=11% Similarity=0.035 Sum_probs=90.4
Q ss_pred CCEEEEEEECCCCEEEEEEECCCEEEEEECCCCCCCCCCCEEEEE-CCCCCCEEEEEECCCCCCEEEEEEECCEEEEEEE
Q ss_conf 881499995399889999425982999972310279972106882-2898315887756999994999980880999980
Q 000733 107 ENVDILSLSNDESTLAVSLYQSPHIHFFSVHSLLNKEIKPSFSCS-LNGSTYVKDIRWRKKPENSFLALSNVGRLYRGGV 185 (1324)
Q Consensus 107 s~VshLAFSsDEsvLAVcaesGG~I~VYDV~SLlng~t~Pl~sis-Ln~st~VrdLaWNP~~sslLAVVSsDGsL~Vldl 185 (1324)
..|..|+|+.|+.+++.+. ++.|++||+.+- +........ .++...|.++.|+|+.. .+|..+.||++++|++
T Consensus 83 ~~v~~~~~s~d~~l~~~s~--dg~v~lWd~~~~---~~~~~~~~~~~~H~~~V~~v~~spdg~-~l~sgs~d~~i~iwd~ 156 (344)
T 4gqb_B 83 AGVADLTWVGERGILVASD--SGAVELWELDEN---ETLIVSKFCKYEHDDIVSTVSVLSSGT-QAVSGSKDICIKVWDL 156 (344)
T ss_dssp SCEEEEEEETTTEEEEEET--TSEEEEEEECTT---SSCEEEEEEEECCSSCEEEEEECTTSS-EEEEEETTSCEEEEET
T ss_pred CCEEEEEEECCCEEEEEEC--CCEEEEEECCCC---CCEEEEECCCCCCCCCEEEEEECCCCC-EEEEEECCCEEEEEEC
T ss_conf 9878999929982999989--798999965388---743586013467899789999989989-9999949893999999
Q ss_pred CCCCE--E---EECCEEEEEECCCCC-EEEEEECCC-EEEECCC-CCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCC
Q ss_conf 89951--4---414434898542797-799993396-5998047-64332112586555787789984358898883487
Q 000733 186 NGPLE--D---VMDNVDAVEWSVKGK-FVAVAKKNV-LSILTSK-LKERLPISLSFKSWVGDCDVNCSVKVDSIRWVRRD 257 (1324)
Q Consensus 186 ~e~lk--~---IasgVTSVaWSPKGK-QLVVGl~DG-IsQyTPD-leeKkvIP~Pf~S~IgD~d~d~sv~V~SI~WLeNd 257 (1324)
..+.. . ....|.|++|+++|+ .++.|..|| |.+|... ++....+.... ....+.++.|...+
T Consensus 157 ~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~----------~~~~~~~~~~~p~~ 226 (344)
T 4gqb_B 157 AQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSA----------PGYLPTSLAWHPQQ 226 (344)
T ss_dssp TTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC--------------CCCEEEEEECSSC
T ss_pred CCCCEEEEECCCCCCEEEEEECCCCCCCEEEECCCCCCCCCCCCCCCEEEEEECCE----------EECCCEEEEECCCC
T ss_conf 99969999757688557888658999740110344355102344552001110100----------00121235661799
Q ss_pred EEEEE
Q ss_conf 49999
Q 000733 258 CIIIG 262 (1324)
Q Consensus 258 sfLFa 262 (1324)
..+++
T Consensus 227 ~~~l~ 231 (344)
T 4gqb_B 227 SEVFV 231 (344)
T ss_dssp TTEEE
T ss_pred CCCEE
T ss_conf 96058
Done!