Query 000734
Match_columns 1324
No_of_seqs 596 out of 2578
Neff 5.0
Searched_HMMs 46136
Date Mon Apr 1 22:52:25 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000734.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000734hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1929 Nucleotide excision re 100.0 1.5E-28 3.2E-33 302.7 26.6 658 1-780 1-740 (811)
2 KOG4362 Transcriptional regula 99.7 6.8E-17 1.5E-21 195.6 11.1 188 1015-1213 478-677 (684)
3 KOG2043 Signaling protein SWIF 99.5 1.8E-14 4E-19 181.6 8.0 182 1016-1210 660-849 (896)
4 KOG3524 Predicted guanine nucl 99.4 9.3E-14 2E-18 165.9 7.8 182 6-195 115-296 (850)
5 KOG0825 PHD Zn-finger protein 99.4 2.2E-13 4.8E-18 163.2 3.2 113 1189-1314 132-266 (1134)
6 PF12738 PTCB-BRCT: twin BRCT 99.3 1.6E-12 3.4E-17 115.2 4.7 63 110-174 1-63 (63)
7 PF00533 BRCT: BRCA1 C Terminu 99.2 3.9E-11 8.4E-16 108.5 8.5 77 6-82 2-78 (78)
8 PF00533 BRCT: BRCA1 C Terminu 99.2 5.6E-11 1.2E-15 107.5 9.2 73 105-179 4-78 (78)
9 KOG3226 DNA repair protein [Re 99.1 1.5E-10 3.2E-15 130.9 7.1 88 106-195 317-404 (508)
10 smart00292 BRCT breast cancer 99.0 1.1E-09 2.3E-14 97.4 8.9 78 8-85 1-80 (80)
11 smart00292 BRCT breast cancer 99.0 1.1E-09 2.3E-14 97.4 8.3 75 106-182 2-80 (80)
12 cd00027 BRCT Breast Cancer Sup 99.0 1.6E-09 3.4E-14 94.2 8.3 70 109-180 1-72 (72)
13 KOG1929 Nucleotide excision re 99.0 2.2E-09 4.7E-14 134.7 11.6 88 104-193 491-578 (811)
14 PF12738 PTCB-BRCT: twin BRCT 98.9 1.3E-09 2.8E-14 96.6 5.5 63 13-77 1-63 (63)
15 cd00027 BRCT Breast Cancer Sup 98.9 8.8E-09 1.9E-13 89.5 8.5 71 12-83 1-72 (72)
16 KOG3226 DNA repair protein [Re 98.8 2.8E-09 6E-14 120.8 5.7 88 6-95 314-401 (508)
17 KOG1244 Predicted transcriptio 98.8 1.7E-09 3.8E-14 118.5 2.4 50 1259-1314 282-331 (336)
18 KOG0966 ATP-dependent DNA liga 98.7 1.1E-07 2.4E-12 116.8 14.4 183 6-191 630-881 (881)
19 KOG3548 DNA damage checkpoint 98.6 2E-07 4.3E-12 115.4 12.3 215 1005-1228 918-1164(1176)
20 KOG3548 DNA damage checkpoint 98.5 2.4E-07 5.3E-12 114.7 10.6 179 7-189 923-1162(1176)
21 KOG4299 PHD Zn-finger protein 98.5 4.5E-08 9.7E-13 118.2 1.8 52 1258-1315 253-306 (613)
22 PF00628 PHD: PHD-finger; Int 98.4 7.3E-08 1.6E-12 82.2 1.1 48 1260-1313 1-50 (51)
23 PLN03122 Poly [ADP-ribose] pol 98.2 2.5E-06 5.4E-11 108.4 8.7 86 105-193 188-278 (815)
24 KOG1973 Chromatin remodeling p 98.1 1.2E-06 2.5E-11 99.7 3.3 53 1255-1315 216-269 (274)
25 COG5034 TNG2 Chromatin remodel 98.1 1.2E-06 2.6E-11 96.4 3.0 52 1254-1313 217-269 (271)
26 PLN03123 poly [ADP-ribose] pol 98.1 4E-06 8.7E-11 108.5 7.8 87 104-192 391-480 (981)
27 KOG4362 Transcriptional regula 98.1 1.3E-05 2.7E-10 99.3 10.9 170 13-185 479-681 (684)
28 KOG1512 PHD Zn-finger protein 98.1 1.4E-06 3.1E-11 96.5 1.9 48 1258-1313 314-362 (381)
29 smart00249 PHD PHD zinc finger 98.0 5.1E-06 1.1E-10 68.1 3.6 46 1260-1311 1-47 (47)
30 KOG1245 Chromatin remodeling c 97.8 3.7E-06 8.1E-11 112.1 -0.9 55 1256-1316 1106-1160(1404)
31 KOG0383 Predicted helicase [Ge 97.6 1.9E-05 4.1E-10 98.8 2.0 51 1255-1314 44-94 (696)
32 KOG4443 Putative transcription 97.5 3.3E-05 7.2E-10 94.2 2.2 52 1258-1315 68-119 (694)
33 PLN03122 Poly [ADP-ribose] pol 97.5 0.00023 5E-09 91.1 9.5 90 5-95 185-277 (815)
34 PLN03123 poly [ADP-ribose] pol 97.3 0.00053 1.1E-08 89.5 8.2 86 6-91 390-476 (981)
35 KOG0955 PHD finger protein BR1 97.2 0.00019 4E-09 93.3 3.3 55 1255-1317 216-272 (1051)
36 KOG0957 PHD finger protein [Ge 97.1 0.00014 3E-09 86.1 0.8 49 1257-1311 543-595 (707)
37 KOG2043 Signaling protein SWIF 97.1 0.001 2.2E-08 86.0 7.7 112 26-139 671-796 (896)
38 PRK14350 ligA NAD-dependent DN 97.0 0.0016 3.5E-08 82.5 8.5 72 106-179 593-665 (669)
39 PRK06063 DNA polymerase III su 97.0 0.0019 4.1E-08 75.3 8.3 73 106-180 232-306 (313)
40 PRK07956 ligA NAD-dependent DN 96.9 0.0024 5.3E-08 81.1 9.0 73 107-181 591-664 (665)
41 KOG3524 Predicted guanine nucl 96.8 0.00059 1.3E-08 83.9 2.8 80 95-182 111-190 (850)
42 KOG2481 Protein required for n 96.7 0.0012 2.6E-08 79.2 4.3 79 8-94 326-414 (570)
43 PRK14351 ligA NAD-dependent DN 96.7 0.0043 9.3E-08 79.0 9.2 74 106-181 609-684 (689)
44 KOG0956 PHD finger protein AF1 96.7 0.00073 1.6E-08 82.7 2.1 51 1258-1314 5-57 (900)
45 PRK14350 ligA NAD-dependent DN 96.7 0.0047 1E-07 78.4 8.8 76 7-84 591-667 (669)
46 PRK06195 DNA polymerase III su 96.6 0.006 1.3E-07 70.9 8.3 74 106-180 220-307 (309)
47 KOG4323 Polycomb-like PHD Zn-f 96.5 0.001 2.2E-08 80.0 1.8 53 1258-1316 168-226 (464)
48 TIGR00575 dnlj DNA ligase, NAD 96.4 0.0052 1.1E-07 78.0 7.2 67 106-174 584-651 (652)
49 COG5141 PHD zinc finger-contai 96.3 0.0017 3.8E-08 77.1 2.1 55 1253-1315 188-244 (669)
50 KOG0954 PHD finger protein [Ge 96.3 0.0015 3.3E-08 80.7 1.6 50 1257-1314 270-321 (893)
51 KOG0323 TFIIF-interacting CTD 96.3 0.0022 4.8E-08 80.0 2.8 88 106-194 441-532 (635)
52 COG0272 Lig NAD-dependent DNA 96.2 0.0099 2.1E-07 74.4 8.1 71 105-177 593-664 (667)
53 COG5163 NOP7 Protein required 96.2 0.0039 8.4E-08 72.7 4.0 78 8-93 349-437 (591)
54 PRK07956 ligA NAD-dependent DN 96.2 0.017 3.6E-07 73.7 9.9 75 8-84 589-664 (665)
55 PRK06063 DNA polymerase III su 96.2 0.014 3E-07 68.2 8.4 75 8-82 231-305 (313)
56 COG0272 Lig NAD-dependent DNA 96.0 0.017 3.6E-07 72.5 8.6 72 8-81 593-665 (667)
57 PRK06195 DNA polymerase III su 96.0 0.018 3.9E-07 67.0 8.5 74 8-81 219-305 (309)
58 PRK14351 ligA NAD-dependent DN 96.0 0.019 4.2E-07 73.3 9.3 76 7-84 607-684 (689)
59 KOG0966 ATP-dependent DNA liga 95.9 0.017 3.7E-07 72.7 8.0 85 106-193 633-722 (881)
60 TIGR00575 dnlj DNA ligase, NAD 95.7 0.019 4.2E-07 73.0 7.6 69 7-77 582-651 (652)
61 PF13831 PHD_2: PHD-finger; PD 95.0 0.0063 1.4E-07 49.4 -0.2 34 1271-1312 2-36 (36)
62 KOG2481 Protein required for n 94.9 0.024 5.1E-07 68.6 4.2 79 106-191 327-414 (570)
63 COG5163 NOP7 Protein required 94.7 0.036 7.9E-07 65.0 4.9 77 107-191 351-438 (591)
64 KOG2093 Translesion DNA polyme 94.4 0.036 7.7E-07 70.5 4.3 176 6-191 44-243 (1016)
65 KOG1473 Nucleosome remodeling 93.8 0.032 6.9E-07 72.2 2.3 46 1258-1312 344-389 (1414)
66 COG5275 BRCT domain type II [G 93.5 0.19 4E-06 55.4 7.1 73 106-180 156-230 (276)
67 KOG1246 DNA-binding protein ju 91.8 0.15 3.2E-06 67.6 4.5 54 1256-1316 153-206 (904)
68 COG5275 BRCT domain type II [G 90.0 1 2.2E-05 49.8 7.8 77 5-82 152-229 (276)
69 KOG0323 TFIIF-interacting CTD 86.3 0.38 8.1E-06 60.9 2.0 83 7-91 439-526 (635)
70 KOG2093 Translesion DNA polyme 76.4 2.3 4.9E-05 55.1 3.7 85 105-192 46-130 (1016)
71 KOG4443 Putative transcription 74.6 0.9 2E-05 57.0 -0.3 51 1258-1314 18-71 (694)
72 PRK05601 DNA polymerase III su 72.2 11 0.00025 45.4 7.9 74 106-181 294-369 (377)
73 KOG4628 Predicted E3 ubiquitin 69.4 3.7 8E-05 48.9 3.1 48 1259-1315 230-277 (348)
74 KOG4299 PHD Zn-finger protein 66.4 4.3 9.4E-05 51.1 3.0 49 1258-1315 47-96 (613)
75 PF15446 zf-PHD-like: PHD/FYVE 66.1 3.3 7.1E-05 44.6 1.6 49 1260-1314 1-60 (175)
76 PF11793 FANCL_C: FANCL C-term 61.8 0.86 1.9E-05 42.2 -3.1 52 1259-1314 3-64 (70)
77 PF14446 Prok-RING_1: Prokaryo 60.3 5.7 0.00012 35.5 1.8 35 1256-1296 3-38 (54)
78 PF13901 DUF4206: Domain of un 57.6 7 0.00015 43.3 2.4 42 1258-1314 152-198 (202)
79 PF12861 zf-Apc11: Anaphase-pr 55.5 5 0.00011 39.0 0.7 47 1260-1314 34-80 (85)
80 KOG0383 Predicted helicase [Ge 55.3 2.3 5.1E-05 54.6 -1.9 50 1256-1314 504-554 (696)
81 KOG0957 PHD finger protein [Ge 53.9 9 0.00019 47.1 2.6 52 1259-1316 120-181 (707)
82 KOG1473 Nucleosome remodeling 51.6 3.3 7.2E-05 54.8 -1.4 52 1255-1314 425-479 (1414)
83 PRK05601 DNA polymerase III su 46.5 50 0.0011 40.2 7.2 76 8-83 293-368 (377)
84 PF13639 zf-RING_2: Ring finge 42.0 1.8 3.8E-05 36.1 -4.1 42 1260-1312 2-44 (44)
85 PF10367 Vps39_2: Vacuolar sor 41.8 19 0.00042 34.8 2.5 31 1258-1295 78-108 (109)
86 COG5067 DBF4 Protein kinase es 41.4 15 0.00032 44.2 1.8 49 8-56 121-169 (468)
87 KOG1512 PHD Zn-finger protein 34.5 15 0.00032 42.5 0.4 51 1258-1314 258-317 (381)
88 cd00162 RING RING-finger (Real 30.8 14 0.0003 29.4 -0.5 42 1261-1313 2-43 (45)
89 KOG1734 Predicted RING-contain 30.0 15 0.00033 42.3 -0.4 52 1256-1314 222-279 (328)
90 PF12678 zf-rbx1: RING-H2 zinc 28.4 17 0.00036 34.0 -0.4 25 1284-1312 49-73 (73)
91 PF13832 zf-HC5HC2H_2: PHD-zin 27.5 37 0.00079 33.6 1.8 33 1258-1296 55-87 (110)
92 PF15446 zf-PHD-like: PHD/FYVE 26.5 48 0.001 36.1 2.5 23 1270-1298 121-143 (175)
93 cd00730 rubredoxin Rubredoxin; 25.9 40 0.00088 29.7 1.5 18 1298-1316 28-45 (50)
94 KOG1632 Uncharacterized PHD Zn 25.1 35 0.00075 41.1 1.4 47 1263-1315 64-114 (345)
95 PHA02929 N1R/p28-like protein; 24.1 25 0.00053 40.3 -0.1 49 1257-1315 173-226 (238)
96 PF08746 zf-RING-like: RING-li 23.2 22 0.00048 30.2 -0.5 43 1261-1311 1-43 (43)
97 KOG3612 PHD Zn-finger protein 22.9 73 0.0016 40.2 3.4 51 1255-1315 57-109 (588)
98 PF05221 AdoHcyase: S-adenosyl 22.6 1.9E+02 0.0042 33.8 6.5 60 1126-1203 37-97 (268)
99 PF07649 C1_3: C1-like domain; 22.5 38 0.00082 26.3 0.7 29 1260-1294 2-30 (30)
100 PRK03564 formate dehydrogenase 20.7 86 0.0019 37.3 3.4 31 1256-1292 185-225 (309)
101 TIGR01562 FdhE formate dehydro 20.1 91 0.002 37.1 3.4 31 1256-1292 182-223 (305)
102 KOG0956 PHD finger protein AF1 20.1 41 0.00089 43.2 0.6 74 1231-1312 94-178 (900)
No 1
>KOG1929 consensus Nucleotide excision repair factor NEF2, RAD4/CUT5 component [Replication, recombination and repair]
Probab=99.96 E-value=1.5e-28 Score=302.72 Aligned_cols=658 Identities=16% Similarity=0.109 Sum_probs=451.9
Q ss_pred CCCcCCCCCCCCcEEEEeccCchhHHHHHHHHHhCCCEEEeccCCcceEEEeCCCCCCchHhHhhhcCCCeEecHHHHHH
Q 000734 1 MEIDCQSKPFIGVRFVLFGFDPINERQVRSKLIDGGGVDVGLYTQSCTHVIVDKIVFDDSVCVAARTDGKTLVTSLWVDH 80 (1324)
Q Consensus 1 mE~k~~S~lF~Gv~F~IsGfd~~~~keL~klI~~~GGtv~~~fss~VTHLIv~~~~sdt~ky~~A~~~gi~VVT~~WI~d 80 (1324)
|+...++..|.|+.|+++|+++..+.+|...+..+||.+..+|+..|||||++... +.+|.+|.+.+++|++..||..
T Consensus 1 ~q~~~~~~~~~~v~~~~t~i~p~~~~~l~~~~~~~Gg~~~~~~t~~~thli~~~~~--s~~~~~a~~~~~~~~~~~wi~~ 78 (811)
T KOG1929|consen 1 MQSTLYSKPMSGVTFSPTGINPIKREELSKKFIKLGGIDFKDFTPSVTHLIVGSVT--SSKYAAAHRFDIKVLDSSWIDY 78 (811)
T ss_pred CCCcccCcccCCceeccCcCCHHHHHHHHHHHHhcCceeeeccCCcCceeeccccc--ccchhhhhcCCCceecchHHHH
Confidence 77788999999999999999999999999999999999999999999999999977 7788999999999999999999
Q ss_pred HHHcCCCcCccccccccccccccccCCCceEEEEcCCCcccHHHHHHHHHHhCCEecCCccCCCceEEEEccCC-chHHH
Q 000734 81 SLDIGMPVDAASIMYRPLKDLNGIHGANSLVMCLTGYQRQDREDIMTLVRLMGSQFSKPLVANKVTHLICYKFE-GEKYE 159 (1324)
Q Consensus 81 C~~~gklLp~~~~l~~Pl~~~~pLp~FsG~vI~~SGf~~~er~~L~~LI~alGGk~s~~Lls~~~THLI~~~~~-g~Ky~ 159 (1324)
.|+.+.+ .-....+.|+.....+|.|.||.||++||...++..|..+|..+||++...| +..++||+..... +.||+
T Consensus 79 ~~d~~~~-~~e~~~~~~l~~~~~~p~~~~~~Vc~tgl~~~eK~ei~~~v~k~gg~~~~~L-~s~v~~~~~~~~~~~~kYe 156 (811)
T KOG1929|consen 79 IYDLWLL-NKEIRLLDPLRDTMKCPGFFGLKVCLTGLSGDEKSEIKILVPKHGGTLHRSL-SSDVNSLKILPEVKTEKYE 156 (811)
T ss_pred HHHHhhh-hccCccCccchhhhcCCcccceEEEecccchHHHHHHHHHhhhcccEEehhh-hhhhheeeeccccchHHHH
Confidence 9998876 3335667777777889999999999999999999999999999999999994 6666666666554 49999
Q ss_pred HHHcCCCCeEechhHHHHHHHhCCCCCCCCCCCCCCchhhhhhhhcCcHHHHHHhhhcccCCCCCCCCCCCCCccccCCC
Q 000734 160 LAKKIKSIKLVNHRWLEDCLRVWELLPEVNYDKSGYELETMEAEAKDSEEEIEVASLKQFGGRDVNKSPHNLNVGIINAH 239 (1324)
Q Consensus 160 ~Akkw~gI~IVs~eWL~DCI~~gkllpE~~Y~~~g~~~e~~~~e~~dSedeseda~~~q~~~r~~~~SP~~~k~G~~~~~ 239 (1324)
+|.+| +++||+.+|+++|+.....+++..|..... .. .+
T Consensus 157 ~al~w-n~~v~~~~w~~~s~~~~~~~~~~~~e~~~~-----~~-----------------------------~i------ 195 (811)
T KOG1929|consen 157 QALKW-NIPVVSDDWLFDSIEKTAVLETKPYEGAPV-----AE-----------------------------AI------ 195 (811)
T ss_pred HHHhh-CCccccHHHHhhhhcccccccccccccccc-----cc-----------------------------ee------
Confidence 99999 999999999999999999999999986320 00 00
Q ss_pred CCCCCccccccccCCCCCCCccccccCCCCccccCCCCCCCccccCCcccccc--ccccccccCC---CCCCCCCCCcCc
Q 000734 240 ESPKSTLEGQGLLVGSTIPEASSGIDNATDMLSTPSRVSRSHQISGFDNVNIT--EVNGCHYTGA---SRDNSHEKTPNS 314 (1324)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~--~~~~~~~~~~---~~~~~~~~~~~~ 314 (1324)
..|.....|. .++.|..-...+.++..++..+ .+|.|+-.+. ++....
T Consensus 196 ----------s~~~~~~~~~-----------~~~~~~s~t~~~~~~~~~~~~n~~~~p~~a~~~~~~~c~v~~s------ 248 (811)
T KOG1929|consen 196 ----------SGPIGSTLPK-----------EILDGDSRTANDTWSTSKVVTNIKVLPFQAKIGNLDDCLVETS------ 248 (811)
T ss_pred ----------ccCCcccccc-----------ccccccchhhhccccchhcccccccchhhhhccccccceeeec------
Confidence 0000000000 0000000001111111111111 1122222110 111110
Q ss_pred ccccccccccccccccccCCCCccccccccccCCCcccccccCC--CCCC-------------ccccccccccccccccc
Q 000734 315 AKVKSDLVPTSKNAEISYHSGSKFCSLNYSRKTPRKSILTMSSG--KVDN-------------DVLNIISSKVENAETRT 379 (1324)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-------------~~~~~~~~~~~~~~~~~ 379 (1324)
.+++++.++..|. ...+|+++..++++.+++++ .+++ -..|..++..+..+++
T Consensus 249 -------~~~~~~~s~l~r~----~~~g~~~~~~e~~e~~st~l~~~~~~~~~q~~d~~g~~~~~~n~~~~~~~~~s~~- 316 (811)
T KOG1929|consen 249 -------GTTSRNRSALSRL----SNNGGSLRFLERLEETSTSLLGDFDPNLEQLWDDNGLKQSFQNLGPSVLGPNSKR- 316 (811)
T ss_pred -------CCcccchhHhHHh----hhcccceeecccCccccchhhcccchHHHhhhhhccCcccccccCcccccccccc-
Confidence 0345666666665 77899999999999776544 5554 2356666666666666
Q ss_pred cccccccCCCCCccccc-cccccccccccccCcccccccccccccccccCCCCCCCCCCCCccccCCCCCCccCCC---C
Q 000734 380 VTACGEIPKRGGELCHE-EESIVLPQKRMSNSTGAGSKSQKMSHNAAECNPRSPINYKTPVSETKSSACHSFETGN---H 455 (1324)
Q Consensus 380 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 455 (1324)
..+..+++++. +|+ +++.+.++.....++.....|+. ..+++++ .-..|.+....+.|.-+.+.- +
T Consensus 317 ------~~~~~~~~~k~~sF~--~d~~~~~~~~~~~~~ll~q~~~~-a~L~~~~-~~~~~~~~~a~~~D~~~~is~i~e~ 386 (811)
T KOG1929|consen 317 ------RSKNSVLIFKNCSFI--IDFEKPGDHESPDKDLLRQYHGK-AYLFPSS-ARSYQKIRSAVPLDSLPDISSINEN 386 (811)
T ss_pred ------ccccccccccccccc--ccccccCCccccchhHHhhcCCc-eeecCcc-cccccccccccccCCCcccccccCC
Confidence 23355678888 666 89999999999999999999986 4444433 335667777766665554221 1
Q ss_pred ---------CCCCCCCCcceee---cCCC-CC-------------------CCCCCCCCCCCcccccccccccccccccc
Q 000734 456 ---------LSPGSNGHYTIET---ATPS-TA-------------------PNKKPLTPDLPSLKTVTSEALHSEGADRN 503 (1324)
Q Consensus 456 ---------~~~~~~~~~~~~~---~~~~-~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 (1324)
......| ++++ .-++ .+ .-.-+-..|..+.+-+.-|..+.-.+..|
T Consensus 387 ~~~~~tp~~~~~~~~~--~~~~~~~~v~s~~~~~~~e~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~~k~v~~ 464 (811)
T KOG1929|consen 387 QDSLGTPSFSESRELG--AKLLKPVDVPSVKPFFNTEKIESSSFENELLHHLLLPSTFLDVTLTEFAGVEVKHLLKNVTN 464 (811)
T ss_pred CCccccccccchhhhh--hhhcccccccccccccchhhhccccccccchhccccccccccceeeccccceeehhcccccc
Confidence 1111221 1111 0111 00 11112233666666665666666553333
Q ss_pred hHH--hhhccccccccCCCCCCCCCCccccccccchhccccccccCCC---ccccccceeccCCCCCCCCCCccccCccc
Q 000734 504 ALE--TCRGSKESTVASKTDNEDFGMGSVHLDGEAEDAQNLHQDLEGS---SAKNRFLVMDKSPRPVNIDSPQVGKDKLI 578 (1324)
Q Consensus 504 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 578 (1324)
..- ....+..+. -++.+.+++.+.....+|.++-.... ....--..++......+..+++ +.--++
T Consensus 465 ~~~v~~~~~~~~~~--------~~~~~~vp~~~l~~~~e~~~~~~s~~~~~~~e~ln~~~~~~gas~~~~f~r-~~~~l~ 535 (811)
T KOG1929|consen 465 PFSVNCILDLSSST--------EDNLRPVPAAALSQPFENLTISNSQSAEAEREKLNNLANDLGASNVKTFTR-KSTTLL 535 (811)
T ss_pred hhHHHHHHHhhcCc--------hhhcCcchhhcccccccCceEEeeechHHHHHHHhHhhhhccccccceeee-cccEEe
Confidence 332 222222221 35668899999999999999887543 4444456677788878888886 332334
Q ss_pred ccchhhhhhhhhhcCCCCCcccccceEeeccCCCCCCccccchhhhccccccccCCCcccc-CCCCcchhhhhhhhhhhh
Q 000734 579 AKPIRKKMVAKKAFGSGHTTNRKGSIYSNKISSLSSPAVCLSREVERANQEKFSSTSELET-DPPNLSDEATKEMETTLV 657 (1324)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 657 (1324)
+.. .|+......-|-..++++.|.||..+.+.+.++++++.. +..+++.+..+.+... ..|..+...++.+..+
T Consensus 536 ~~~-~k~s~~~~~~kw~ip~vT~~wL~e~~rq~~~~~~e~~l~--~~st~~e~~~~~~~~~~~~P~~k~~t~s~sv~~-- 610 (811)
T KOG1929|consen 536 TTS-AKGSKYEIAGKWSIPIVTPDWLYECVRQNKGERNEGFLN--GNSTAKERPISPSIRFAVVPGKKPDTVSKSVVH-- 610 (811)
T ss_pred ccc-cccchhhhccccCCCccChhHHHhhccccCcccceeecc--ccccccccCcccccccccCCCCCcceeecceec--
Confidence 433 344444433344489999999999999999999999994 4888888998999988 8999999999999887
Q ss_pred cccCCCCCCCcccccCCcCCCCchhhHHHHHhhccccccccccccccccccc--ccC--------------CCccccccc
Q 000734 658 AKCGDNSGDGIKTMDDETEAPDEKYEIEFEKMLNNEKSEGVQSIHKEDTMMK--RVP--------------GVGHEAHDS 721 (1324)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--------------~~~~~~~~~ 721 (1324)
...++.-+.+..++..--++..+.|++++.++..++ ...++|...|.+-. .++ ++++-+.++
T Consensus 611 -~~~~~~~~s~~~v~~~g~~~~~e~h~~~d~~~~~~s-k~~~~~~~~d~~~~~~~le~~~~~~ps~~~~~v~~~~~~~a~ 688 (811)
T KOG1929|consen 611 -KEDTNKPKSVATVSGKGSGSVYEEHLLLDTEVKFDS-KIAKTPPGGDLRDVSDYLELPLFDRPSHDLSRVVLQQYDLAS 688 (811)
T ss_pred -ccccCCCcccccccccCCCccccccccccchhhhhh-hhhcCCCcccccccccceecccccCcCCChhhccceeeeecc
Confidence 566677888888888888999999988888774444 55777777764332 111 334468889
Q ss_pred ccccccCccccc-ccccccCccccCcccccccccccccc--cccccccCCCCCCCCccccCC
Q 000734 722 MVYGRDGITGKE-VMNAEVGMTVSGKRFDLDESTSKMDG--MKSKRKIRPSDKANGNVSADK 780 (1324)
Q Consensus 722 ~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~--~k~~~~~~~~~k~~~~~~~~~ 780 (1324)
+.+.|.+.+|.. .+-++++. |. .....+ .+.+-.+.++.+++|..++++
T Consensus 689 ~~~~r~~~~~~~s~~~~k~q~--t~--------~~~~~r~~~~e~~~~~~~~~~~~~~~~~g 740 (811)
T KOG1929|consen 689 SQRKRTALDGCVSEQVPKKQP--TA--------ISNPERIQRTEKVSHLNDRYAPGIDDKRG 740 (811)
T ss_pred ccccchhhhhhhhhhcCCcCc--cc--------ccCccccccccccchhhcccCCCcccccc
Confidence 999999999876 67777777 22 333333 344666778889999887755
No 2
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=99.68 E-value=6.8e-17 Score=195.59 Aligned_cols=188 Identities=22% Similarity=0.281 Sum_probs=139.8
Q ss_pred CeEEEEecChHHHHHHHHHHHHhCCEEeecCCccCCcccEEEcCC-----CCccHHHHHHHhcCCeeechhHHHHHhhcC
Q 000734 1015 PIWFILSGHRLQRKEFQVVIRHLKGRLCRDSHQWSYQATHFIAPE-----IRRTEKFFAAAASGRWILKTDYLSACSQAG 1089 (1324)
Q Consensus 1015 ~~vfllSGLs~er~~L~k~Ik~LGG~V~~d~~~~s~~~THLI~~k-----~~RT~KfL~AIA~GkWIVs~~WL~aS~kaG 1089 (1324)
+.+.+.||+++..+++...+..+ . ....|++.+||+|+.. +.||+|||.|||+|||||+++|+.+|++.+
T Consensus 478 k~~~~~s~l~p~ek~~v~~~a~~--t---~~k~~~~~~thvi~~~~~~g~c~rTlk~~~gil~gkwi~~~~w~~~s~k~~ 552 (684)
T KOG4362|consen 478 KLVLLVSGLTPSEKQLVEKFAVD--T---ISKFWIEPVTHVIASTDLEGACLRTLKVLMGILRGKWILSYDWVLASLKLR 552 (684)
T ss_pred ceeeeeccCCcchHHHHHHHHHH--H---HhhccCCCceeeeeecccccchhhhHHHHHHhhcCceeeeHHHHHHHHHhc
Confidence 46889999987666666656655 2 2456888999999987 999999999999999999999999999999
Q ss_pred CCCCCCCccccCCCCCccccccccchhhhHHHHHhhCCCCCCCcEEEEecCCCCCCHHHHHHHHHhCCcEEeccCCCccc
Q 000734 1090 KFLLEEPYEWHKNGLSEDGAINLEAPRKWRLLRERTGHGAFHGMRIIVYGDCIAPPLDTLKRVVKAGDGNILATSPPYTR 1169 (1324)
Q Consensus 1090 ~fLdEe~YE~~d~~~~~d~~~~~~aprrwR~~r~~~~~~LF~G~~f~l~~~~v~p~~~~Lk~LIeaGGG~Vv~~~Pp~~~ 1169 (1324)
+|++|++||++.+.... -.+|...|+.+..+.++||.|..||++++|.+++.++|..||.++||+++...+-...
T Consensus 553 ~~~~eepfEl~~d~~~~-----~~~~~~~~~~a~s~~~kLf~gl~~~~~g~fs~~p~~~l~~l~~~~gg~~l~~~~~~~~ 627 (684)
T KOG4362|consen 553 KWVSEEPFELQIDVPGA-----REGPKEKRLRAESYKPKLFEGLKFYFVGDFSNPPKEQLQELVHLAGGTILQVPRVAYS 627 (684)
T ss_pred CCCCCCCeeEeecccCc-----ccCcccccccccccCcchhcCCcceeecccccCcHHHHHHHHhhcCcceeeccCcccc
Confidence 99999999999764321 2455666666666678999999999999999999999999999999999998654222
Q ss_pred ccccccceee----ccCCCchh--hHHH-HHHHhcCCceeeecceeeeeee
Q 000734 1170 FLNSGVDFAV----VSPGMPRV--DLWV-QEFLKHEIPCVVADYLVEFVCK 1213 (1324)
Q Consensus 1170 ~t~~~~d~~I----Vs~~~~~~--d~~i-q~l~k~GIpC~s~EyIldyvck 1213 (1324)
++.. ....+ +.++.+.. +... .-.+..+.+.+...|+++-+--
T Consensus 628 ~~k~-s~~~~~~~~~~~~~~~~~k~~~~ea~~~s~~a~~~~~~wvl~s~a~ 677 (684)
T KOG4362|consen 628 DKKK-STIVVLSEKPVLDSILWQKVNDAEALALSQRARAVSSSWVLDSIAG 677 (684)
T ss_pred cccc-cceeEeecccCCCchhhhhhccHHHHHHhcCCCccchhhhhcchhc
Confidence 1111 11111 11121110 1111 2234788999999999886643
No 3
>KOG2043 consensus Signaling protein SWIFT and related BRCT domain proteins [Transcription; Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.50 E-value=1.8e-14 Score=181.63 Aligned_cols=182 Identities=25% Similarity=0.446 Sum_probs=135.8
Q ss_pred eEEEEecChHHHHHHHHHHHHhCCEEeecCCccCCcccEEEcCCCCccHHHHHHHhcCCeeechhHHHHHhhcCCCCCCC
Q 000734 1016 IWFILSGHRLQRKEFQVVIRHLKGRLCRDSHQWSYQATHFIAPEIRRTEKFFAAAASGRWILKTDYLSACSQAGKFLLEE 1095 (1324)
Q Consensus 1016 ~vfllSGLs~er~~L~k~Ik~LGG~V~~d~~~~s~~~THLI~~k~~RT~KfL~AIA~GkWIVs~~WL~aS~kaG~fLdEe 1095 (1324)
+.++|+++. +...+..+++.|||.+.... .++||+|+.+++||.|||+||++|+|||++.||.+|++.|.|+||.
T Consensus 660 ~~~lfs~~~-~~~~~k~~~k~lg~s~~ss~----~e~Th~i~~rirRT~k~Leai~~G~~ivT~~wL~s~~k~g~~~dek 734 (896)
T KOG2043|consen 660 IEVLFSDKN-DGKNYKLAKKFLGGSVASSD----SEATHFIADRIRRTLKFLEAISSGKPLVTPQWLVSSLKSGEKLDEK 734 (896)
T ss_pred eeeeeeecc-CchhhhhHHhhccceeeccc----ccceeeeehhhhccHHHHhhhccCCcccchHHHHHHhhccccccCc
Confidence 688999984 34457788899998886543 4799999999999999999999999999999999999999999999
Q ss_pred CccccCCCCCccccccccchhhhHHHHHhhCCCCCCCcEEEEecCCCCCCHHHHHHHHHhCCcEEeccCCCcc----ccc
Q 000734 1096 PYEWHKNGLSEDGAINLEAPRKWRLLRERTGHGAFHGMRIIVYGDCIAPPLDTLKRVVKAGDGNILATSPPYT----RFL 1171 (1324)
Q Consensus 1096 ~YE~~d~~~~~d~~~~~~aprrwR~~r~~~~~~LF~G~~f~l~~~~v~p~~~~Lk~LIeaGGG~Vv~~~Pp~~----~~t 1171 (1324)
+|.+.|...+.+..+.+. -++.|.+. .++|.|+.|++. +.+.++...+..||+++||.|+..+|-.. ...
T Consensus 735 ~yil~D~ekEk~~gf~l~----ssl~RAr~-~plL~g~~v~vt-p~v~p~~~~v~eiie~~ggnvv~~~p~~~~~~k~~l 808 (896)
T KOG2043|consen 735 PYILHDEEKEKEFGFRLK----SSLLRARA-DPLLEGINVHVT-PSVTPSPKTVVEIIEISGGNVVSDSPKGVYTKKIVL 808 (896)
T ss_pred cccccCHHHHhccCcchh----hHHHHhhc-chhhcCceEEec-cccccCcchhHHHHhhcCcceecccCccceeccccc
Confidence 999999755544333222 22333322 489999999995 66789999999999999999999988633 111
Q ss_pred c-cccceeeccCCCchhhHHHHHHHhcCCc---eeeecceeee
Q 000734 1172 N-SGVDFAVVSPGMPRVDLWVQEFLKHEIP---CVVADYLVEF 1210 (1324)
Q Consensus 1172 ~-~~~d~~IVs~~~~~~d~~iq~l~k~GIp---C~s~EyIldy 1210 (1324)
+ ...+++++.+..++. .+-.|+..+.+ +|.++|++.-
T Consensus 809 ~~~~~~~v~itc~~D~~--~~~~fl~~~~~~~~i~~~~~~l~~ 849 (896)
T KOG2043|consen 809 SAHDLDVVGITCSEDRT--FCDNFLDNGLEQENIFSPEYVLKG 849 (896)
T ss_pred ccCcccceeeccccccc--ccccccccccccccccchHhhhhc
Confidence 1 123445554443221 24456677777 7777777554
No 4
>KOG3524 consensus Predicted guanine nucleotide exchange factor (PEBBLE) [Signal transduction mechanisms]
Probab=99.45 E-value=9.3e-14 Score=165.86 Aligned_cols=182 Identities=15% Similarity=0.122 Sum_probs=155.6
Q ss_pred CCCCCCCcEEEEeccCchhHHHHHHHHHhCCCEEEeccCCcceEEEeCCCCCCchHhHhhhcCCCeEecHHHHHHHHHcC
Q 000734 6 QSKPFIGVRFVLFGFDPINERQVRSKLIDGGGVDVGLYTQSCTHVIVDKIVFDDSVCVAARTDGKTLVTSLWVDHSLDIG 85 (1324)
Q Consensus 6 ~S~lF~Gv~F~IsGfd~~~~keL~klI~~~GGtv~~~fss~VTHLIv~~~~sdt~ky~~A~~~gi~VVT~~WI~dC~~~g 85 (1324)
...+|.|++.|++|+.+... +|..+|.+|||.|..++...+||+|+.+.. ..+|..|... .+++.+.||..||...
T Consensus 115 y~~~m~~vvlcfTg~rkk~e-~lv~lvh~mgg~irkd~nsktthli~n~s~--gek~~~a~t~-~~~~rp~wv~~aw~~r 190 (850)
T KOG3524|consen 115 YCELMKDVVMCFTGERKKKE-ELVDLVHYMGGSIRKDTNSKTTHLIANKVE--GEKQSIALVG-VPTMRPDWVTEAWKHR 190 (850)
T ss_pred cchhhcCceeeeeccchhhH-HHHHHHHHhcceeEeeeccCceEEEeeccc--ceEEEEEeec-cceechHhhhhhhcCc
Confidence 45679999999999988766 899999999999999999999999999865 7788888777 9999999999999988
Q ss_pred CCcCccccccccccccccccCCCceEEEEcCCCcccHHHHHHHHHHhCCEecCCccCCCceEEEEccCCchHHHHHHcCC
Q 000734 86 MPVDAASIMYRPLKDLNGIHGANSLVMCLTGYQRQDREDIMTLVRLMGSQFSKPLVANKVTHLICYKFEGEKYELAKKIK 165 (1324)
Q Consensus 86 klLp~~~~l~~Pl~~~~pLp~FsG~vI~~SGf~~~er~~L~~LI~alGGk~s~~Lls~~~THLI~~~~~g~Ky~~Akkw~ 165 (1324)
..+... +.-+-+...+.++.|.|+.|+|.||...+..++.+..+..||.+... +..|||||+......-...+...
T Consensus 191 n~~yfd-a~~~~f~d~hrl~~feg~~~~f~gF~~ee~~~m~~sle~~gg~~a~~--d~~cthvvv~e~~~~~~p~~~s~- 266 (850)
T KOG3524|consen 191 NDSYFD-AMEPCFVDKHRLGVFEGLSLFFHGFKQEEIDDMLRSLENTGGKLAPS--DTLCTHVVVNEDNDEVEPLAVSS- 266 (850)
T ss_pred chhhhh-hhccchhhhhccccccCCeEeecCCcHHHHHHHHHHHHhcCCcccCC--CCCceeEeecCCccccccccccc-
Confidence 765432 12223334567889999999999999999999999999999999985 68899999998876666666664
Q ss_pred CCeEechhHHHHHHHhCCCCCCCCCCCCCC
Q 000734 166 SIKLVNHRWLEDCLRVWELLPEVNYDKSGY 195 (1324)
Q Consensus 166 gI~IVs~eWL~DCI~~gkllpE~~Y~~~g~ 195 (1324)
+..+|..+|+|-+|..+.+.-|+.|+...+
T Consensus 267 ~~~~vk~ewfw~siq~g~~a~e~~yl~~~~ 296 (850)
T KOG3524|consen 267 NQVHVKKEWFWVSIQRGCCAIEDNYLLPTG 296 (850)
T ss_pred cceeecccceEEEEecchhccccceecccc
Confidence 678999999999999999999999996543
No 5
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=99.36 E-value=2.2e-13 Score=163.19 Aligned_cols=113 Identities=19% Similarity=0.437 Sum_probs=87.4
Q ss_pred HHHHHHHhcCCceeeecceeeeeeecCcccccccccccchhhhhhhhhhhhhh----hhhhccCC---------------
Q 000734 1189 LWVQEFLKHEIPCVVADYLVEFVCKPGYSLERHVQYNTHAWAEKSLSNLLSKA----EEIVMDLT--------------- 1249 (1324)
Q Consensus 1189 ~~iq~l~k~GIpC~s~EyIldyvckp~c~Lerhvl~Nscpl~~~~f~~i~~~~----~~i~~~~~--------------- 1249 (1324)
.|...|....++ +.||+|+ .|.-.|....++||++|+.|..+.+.. +.++..+.
T Consensus 132 s~~DqL~~~~k~------c~H~FC~-~Ci~sWsR~aqTCPiDR~EF~~v~V~eS~~~~~~vR~lP~EEs~~~~e~~~d~~ 204 (1134)
T KOG0825|consen 132 SCNDQLEESEKH------TAHYFCE-ECVGSWSRCAQTCPVDRGEFGEVKVLESTGIEANVRCLPSEESENILEKGGDEK 204 (1134)
T ss_pred HHHHHhhccccc------cccccHH-HHhhhhhhhcccCchhhhhhheeeeeccccccceeEecchhhhhhhhhhccccc
Confidence 344555444444 4789999 588899999999999999999997532 12222211
Q ss_pred --CCCCCCcccccccccCCCCCCCceEEecCCCCCCccCCc-ccccccCCCCCCCCCCCccCcccccC
Q 000734 1250 --PPNDYDTDKITCQACGCSDRGEVMLICGDESGSVGCGVG-MHIDCCDPPLESVPEEDWFCPTCTRS 1314 (1324)
Q Consensus 1250 --~~e~~d~~~~~C~vC~~~~~~~~lLlCd~~~~~~~C~~~-~H~~Cl~PpL~~vP~gdW~Cp~C~~~ 1314 (1324)
...+.......|.+|...+.+++||||| +|+.+ ||+|||+|+|-++|-+.|||++|...
T Consensus 205 ~d~~~~~~~E~~~C~IC~~~DpEdVLLLCD------sCN~~~YH~YCLDPdl~eiP~~eWYC~NC~dL 266 (1134)
T KOG0825|consen 205 QDQISGLSQEEVKCDICTVHDPEDVLLLCD------SCNKVYYHVYCLDPDLSESPVNEWYCTNCSLL 266 (1134)
T ss_pred cccccCcccccccceeeccCChHHhheeec------ccccceeeccccCcccccccccceecCcchhh
Confidence 1112244467899999999999999999 99998 99999999999999999999999764
No 6
>PF12738 PTCB-BRCT: twin BRCT domain; PDB: 3PA6_A 3KTF_C 2WT8_C 3EF1_A 3EF0_A.
Probab=99.31 E-value=1.6e-12 Score=115.21 Aligned_cols=63 Identities=38% Similarity=0.802 Sum_probs=55.4
Q ss_pred eEEEEcCCCcccHHHHHHHHHHhCCEecCCccCCCceEEEEccCCchHHHHHHcCCCCeEechhH
Q 000734 110 LVMCLTGYQRQDREDIMTLVRLMGSQFSKPLVANKVTHLICYKFEGEKYELAKKIKSIKLVNHRW 174 (1324)
Q Consensus 110 ~vI~~SGf~~~er~~L~~LI~alGGk~s~~Lls~~~THLI~~~~~g~Ky~~Akkw~gI~IVs~eW 174 (1324)
++||++||.+.++..|+.+++++||+|..+| +.++|||||....+.||+.|.+| +|+||+++|
T Consensus 1 ~~i~~sg~~~~~~~~l~~~i~~~Gg~~~~~l-t~~~THLI~~~~~~~K~~~A~~~-gi~vV~~~W 63 (63)
T PF12738_consen 1 VVICFSGFSGKERSQLRKLIEALGGKYSKDL-TKKTTHLICSSPEGKKYRKAKEW-GIPVVSPDW 63 (63)
T ss_dssp -EEEEEEB-TTTCCHHHHHHHCTT-EEESSS-STT-SEEEEES--HHHHHHHHHC-TSEEEEHHH
T ss_pred CEEEECCCCHHHHHHHHHHHHHCCCEEeccc-cCCceEEEEeCCCcHHHHHHHHC-CCcEECCCC
Confidence 5899999999999999999999999999995 99999999999999999999999 799999999
No 7
>PF00533 BRCT: BRCA1 C Terminus (BRCT) domain; InterPro: IPR001357 The BRCT domain (after the C_terminal domain of a breast cancer susceptibility protein) is found predominantly in proteins involved in cell cycle checkpoint functions responsive to DNA damage [], for example as found in the breast cancer DNA-repair protein BRCA1. The domain is an approximately 100 amino acid tandem repeat, which appears to act as a phospho-protein binding domain []. A chitin biosynthesis protein from yeast also seems to belong to this group. ; GO: 0005622 intracellular; PDB: 3L46_A 3AL3_A 3AL2_A 1WF6_A 3II6_X 2NTE_B 3FA2_A 2R1Z_A 2COK_A 2K7F_A ....
Probab=99.21 E-value=3.9e-11 Score=108.53 Aligned_cols=77 Identities=25% Similarity=0.430 Sum_probs=71.5
Q ss_pred CCCCCCCcEEEEeccCchhHHHHHHHHHhCCCEEEeccCCcceEEEeCCCCCCchHhHhhhcCCCeEecHHHHHHHH
Q 000734 6 QSKPFIGVRFVLFGFDPINERQVRSKLIDGGGVDVGLYTQSCTHVIVDKIVFDDSVCVAARTDGKTLVTSLWVDHSL 82 (1324)
Q Consensus 6 ~S~lF~Gv~F~IsGfd~~~~keL~klI~~~GGtv~~~fss~VTHLIv~~~~sdt~ky~~A~~~gi~VVT~~WI~dC~ 82 (1324)
.+.+|+|+.|||.+++...+.+|.++|+.+||++...++..+||||++.......+|..+...+++||+++||.+|+
T Consensus 2 ~~~~F~g~~f~i~~~~~~~~~~l~~~i~~~GG~v~~~~~~~~thvI~~~~~~~~~k~~~~~~~~i~iV~~~Wi~~ci 78 (78)
T PF00533_consen 2 KPKIFEGCTFCISGFDSDEREELEQLIKKHGGTVSNSFSKKTTHVIVGNPNKRTKKYKAAIANGIPIVSPDWIEDCI 78 (78)
T ss_dssp STTTTTTEEEEESSTSSSHHHHHHHHHHHTTEEEESSSSTTSSEEEESSSHCCCHHHHHHHHTTSEEEETHHHHHHH
T ss_pred CCCCCCCEEEEEccCCCCCHHHHHHHHHHcCCEEEeecccCcEEEEeCCCCCccHHHHHHHHCCCeEecHHHHHHhC
Confidence 57899999999988999999999999999999999999999999999986335888999999999999999999996
No 8
>PF00533 BRCT: BRCA1 C Terminus (BRCT) domain; InterPro: IPR001357 The BRCT domain (after the C_terminal domain of a breast cancer susceptibility protein) is found predominantly in proteins involved in cell cycle checkpoint functions responsive to DNA damage [], for example as found in the breast cancer DNA-repair protein BRCA1. The domain is an approximately 100 amino acid tandem repeat, which appears to act as a phospho-protein binding domain []. A chitin biosynthesis protein from yeast also seems to belong to this group. ; GO: 0005622 intracellular; PDB: 3L46_A 3AL3_A 3AL2_A 1WF6_A 3II6_X 2NTE_B 3FA2_A 2R1Z_A 2COK_A 2K7F_A ....
Probab=99.20 E-value=5.6e-11 Score=107.49 Aligned_cols=73 Identities=27% Similarity=0.575 Sum_probs=68.4
Q ss_pred cCCCceEEEEcCCCcccHHHHHHHHHHhCCEecCCccCCCceEEEEccC--CchHHHHHHcCCCCeEechhHHHHHH
Q 000734 105 HGANSLVMCLTGYQRQDREDIMTLVRLMGSQFSKPLVANKVTHLICYKF--EGEKYELAKKIKSIKLVNHRWLEDCL 179 (1324)
Q Consensus 105 p~FsG~vI~~SGf~~~er~~L~~LI~alGGk~s~~Lls~~~THLI~~~~--~g~Ky~~Akkw~gI~IVs~eWL~DCI 179 (1324)
+.|+|+.|+++++...+++.|.++|+.+||++... ++..+||||+... ...|+..|..+ +|+||+++||++||
T Consensus 4 ~~F~g~~f~i~~~~~~~~~~l~~~i~~~GG~v~~~-~~~~~thvI~~~~~~~~~k~~~~~~~-~i~iV~~~Wi~~ci 78 (78)
T PF00533_consen 4 KIFEGCTFCISGFDSDEREELEQLIKKHGGTVSNS-FSKKTTHVIVGNPNKRTKKYKAAIAN-GIPIVSPDWIEDCI 78 (78)
T ss_dssp TTTTTEEEEESSTSSSHHHHHHHHHHHTTEEEESS-SSTTSSEEEESSSHCCCHHHHHHHHT-TSEEEETHHHHHHH
T ss_pred CCCCCEEEEEccCCCCCHHHHHHHHHHcCCEEEee-cccCcEEEEeCCCCCccHHHHHHHHC-CCeEecHHHHHHhC
Confidence 34999999999999999999999999999999998 6999999999987 78899999986 99999999999997
No 9
>KOG3226 consensus DNA repair protein [Replication, recombination and repair]
Probab=99.08 E-value=1.5e-10 Score=130.92 Aligned_cols=88 Identities=23% Similarity=0.394 Sum_probs=83.3
Q ss_pred CCCceEEEEcCCCcccHHHHHHHHHHhCCEecCCccCCCceEEEEccCCchHHHHHHcCCCCeEechhHHHHHHHhCCCC
Q 000734 106 GANSLVMCLTGYQRQDREDIMTLVRLMGSQFSKPLVANKVTHLICYKFEGEKYELAKKIKSIKLVNHRWLEDCLRVWELL 185 (1324)
Q Consensus 106 ~FsG~vI~~SGf~~~er~~L~~LI~alGGk~s~~Lls~~~THLI~~~~~g~Ky~~Akkw~gI~IVs~eWL~DCI~~gkll 185 (1324)
.++|+++.++||..++|..|+.....|||+|..+ ++..||||||..++..||.+.... |-+||+-+||.+|++..++|
T Consensus 317 lL~GVV~VlSGfqNP~Rs~LRskAl~LGAkY~pD-W~~gsThLICAF~NTPKy~QV~g~-Gg~IV~keWI~~Cy~~kk~l 394 (508)
T KOG3226|consen 317 LLEGVVFVLSGFQNPERSTLRSKALTLGAKYQPD-WNAGSTHLICAFPNTPKYRQVEGN-GGTIVSKEWITECYAQKKLL 394 (508)
T ss_pred hhhceEEEEecccCchHHHHHHHHHhhcccccCC-cCCCceeEEEecCCCcchhhcccC-CceEeeHHHHHHHHHHHhhc
Confidence 3789999999999999999999999999999999 799999999999999999999986 66899999999999999999
Q ss_pred CCCCCCCCCC
Q 000734 186 PEVNYDKSGY 195 (1324)
Q Consensus 186 pE~~Y~~~g~ 195 (1324)
|+..|++.+-
T Consensus 395 p~rrYlm~~~ 404 (508)
T KOG3226|consen 395 PIRRYLMHAG 404 (508)
T ss_pred cHHHHHhcCC
Confidence 9999997654
No 10
>smart00292 BRCT breast cancer carboxy-terminal domain.
Probab=99.02 E-value=1.1e-09 Score=97.40 Aligned_cols=78 Identities=28% Similarity=0.340 Sum_probs=68.5
Q ss_pred CCCCCcEEEEec-cCchhHHHHHHHHHhCCCEEEeccCC-cceEEEeCCCCCCchHhHhhhcCCCeEecHHHHHHHHHcC
Q 000734 8 KPFIGVRFVLFG-FDPINERQVRSKLIDGGGVDVGLYTQ-SCTHVIVDKIVFDDSVCVAARTDGKTLVTSLWVDHSLDIG 85 (1324)
Q Consensus 8 ~lF~Gv~F~IsG-fd~~~~keL~klI~~~GGtv~~~fss-~VTHLIv~~~~sdt~ky~~A~~~gi~VVT~~WI~dC~~~g 85 (1324)
.+|+|++||+.| +....+..|.++|..+||.+...+.. .+||+|+.........+..+...+++||++.||.+|+..+
T Consensus 1 ~~f~g~~~~~~g~~~~~~~~~l~~~i~~~Gg~~~~~~~~~~~thvi~~~~~~~~~~~~~~~~~~~~iV~~~Wi~~~~~~~ 80 (80)
T smart00292 1 KLFKGKVFVITGKFDKNERDELKELIEALGGKVTSSLSSKTTTHVIVGSPEGGKLELLLAIALGIPIVTEDWLLDCLKAG 80 (80)
T ss_pred CccCCeEEEEeCCCCCccHHHHHHHHHHcCCEEecccCccceeEEEEcCCCCccHHHHHHHHcCCCCccHHHHHHHHHCc
Confidence 489999999999 88889999999999999999999988 8999999986533333677888999999999999999864
No 11
>smart00292 BRCT breast cancer carboxy-terminal domain.
Probab=99.01 E-value=1.1e-09 Score=97.45 Aligned_cols=75 Identities=28% Similarity=0.554 Sum_probs=65.4
Q ss_pred CCCceEEEEcC-CCcccHHHHHHHHHHhCCEecCCccCC-CceEEEEccCCchH--HHHHHcCCCCeEechhHHHHHHHh
Q 000734 106 GANSLVMCLTG-YQRQDREDIMTLVRLMGSQFSKPLVAN-KVTHLICYKFEGEK--YELAKKIKSIKLVNHRWLEDCLRV 181 (1324)
Q Consensus 106 ~FsG~vI~~SG-f~~~er~~L~~LI~alGGk~s~~Lls~-~~THLI~~~~~g~K--y~~Akkw~gI~IVs~eWL~DCI~~ 181 (1324)
.|+|+.||++| +....+..|.+++..+||++... ++. .+||||+......+ +..|... +++||+++||++|+..
T Consensus 2 ~f~g~~~~~~g~~~~~~~~~l~~~i~~~Gg~~~~~-~~~~~~thvi~~~~~~~~~~~~~~~~~-~~~iV~~~Wi~~~~~~ 79 (80)
T smart00292 2 LFKGKVFVITGKFDKNERDELKELIEALGGKVTSS-LSSKTTTHVIVGSPEGGKLELLLAIAL-GIPIVTEDWLLDCLKA 79 (80)
T ss_pred ccCCeEEEEeCCCCCccHHHHHHHHHHcCCEEecc-cCccceeEEEEcCCCCccHHHHHHHHc-CCCCccHHHHHHHHHC
Confidence 48999999999 88889999999999999999998 566 89999999876554 4666664 8999999999999986
Q ss_pred C
Q 000734 182 W 182 (1324)
Q Consensus 182 g 182 (1324)
+
T Consensus 80 ~ 80 (80)
T smart00292 80 G 80 (80)
T ss_pred c
Confidence 4
No 12
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=98.98 E-value=1.6e-09 Score=94.21 Aligned_cols=70 Identities=31% Similarity=0.577 Sum_probs=63.0
Q ss_pred ceEEEEcCCC-cccHHHHHHHHHHhCCEecCCccCCCceEEEEccCCchH-HHHHHcCCCCeEechhHHHHHHH
Q 000734 109 SLVMCLTGYQ-RQDREDIMTLVRLMGSQFSKPLVANKVTHLICYKFEGEK-YELAKKIKSIKLVNHRWLEDCLR 180 (1324)
Q Consensus 109 G~vI~~SGf~-~~er~~L~~LI~alGGk~s~~Lls~~~THLI~~~~~g~K-y~~Akkw~gI~IVs~eWL~DCI~ 180 (1324)
|+.|+++|+. ..++..|.+++..+||++... ++..+||||+......+ +..|..+ +++||+++||++|+.
T Consensus 1 ~~~~~i~g~~~~~~~~~l~~~i~~~Gg~v~~~-~~~~~thvI~~~~~~~~~~~~~~~~-~~~iV~~~Wi~~~~~ 72 (72)
T cd00027 1 GLTFVITGDLPSEERDELKELIEKLGGKVTSS-VSKKTTHVIVGSDAGPKKLLKAIKL-GIPIVTPEWLLDCLK 72 (72)
T ss_pred CCEEEEEecCCCcCHHHHHHHHHHcCCEEecc-ccCCceEEEECCCCCchHHHHHHHc-CCeEecHHHHHHHhC
Confidence 6789999998 889999999999999999998 57899999999886655 8888876 899999999999983
No 13
>KOG1929 consensus Nucleotide excision repair factor NEF2, RAD4/CUT5 component [Replication, recombination and repair]
Probab=98.96 E-value=2.2e-09 Score=134.66 Aligned_cols=88 Identities=24% Similarity=0.357 Sum_probs=81.1
Q ss_pred ccCCCceEEEEcCCCcccHHHHHHHHHHhCCEecCCccCCCceEEEEccCCchHHHHHHcCCCCeEechhHHHHHHHhCC
Q 000734 104 IHGANSLVMCLTGYQRQDREDIMTLVRLMGSQFSKPLVANKVTHLICYKFEGEKYELAKKIKSIKLVNHRWLEDCLRVWE 183 (1324)
Q Consensus 104 Lp~FsG~vI~~SGf~~~er~~L~~LI~alGGk~s~~Lls~~~THLI~~~~~g~Ky~~Akkw~gI~IVs~eWL~DCI~~gk 183 (1324)
+.+|+++.|++++....+++.|..+...+|+.....|+... ||||+....+.+|..|.+| +|+||+++||.+|.+++.
T Consensus 491 ~~~~e~~~~~~s~~~~~~~e~ln~~~~~~gas~~~~f~r~~-~~l~~~~~k~s~~~~~~kw-~ip~vT~~wL~e~~rq~~ 568 (811)
T KOG1929|consen 491 SQPFENLTISNSQSAEAEREKLNNLANDLGASNVKTFTRKS-TTLLTTSAKGSKYEIAGKW-SIPIVTPDWLYECVRQNK 568 (811)
T ss_pred cccccCceEEeeechHHHHHHHhHhhhhccccccceeeecc-cEEeccccccchhhhcccc-CCCccChhHHHhhccccC
Confidence 34688999999999999999999999999999999965554 9999999999999999999 999999999999999999
Q ss_pred CCCCCCCCCC
Q 000734 184 LLPEVNYDKS 193 (1324)
Q Consensus 184 llpE~~Y~~~ 193 (1324)
.++..-|++.
T Consensus 569 ~~~~e~~l~~ 578 (811)
T KOG1929|consen 569 GERNEGFLNG 578 (811)
T ss_pred cccceeeccc
Confidence 9999999974
No 14
>PF12738 PTCB-BRCT: twin BRCT domain; PDB: 3PA6_A 3KTF_C 2WT8_C 3EF1_A 3EF0_A.
Probab=98.92 E-value=1.3e-09 Score=96.64 Aligned_cols=63 Identities=24% Similarity=0.264 Sum_probs=55.2
Q ss_pred cEEEEeccCchhHHHHHHHHHhCCCEEEeccCCcceEEEeCCCCCCchHhHhhhcCCCeEecHHH
Q 000734 13 VRFVLFGFDPINERQVRSKLIDGGGVDVGLYTQSCTHVIVDKIVFDDSVCVAARTDGKTLVTSLW 77 (1324)
Q Consensus 13 v~F~IsGfd~~~~keL~klI~~~GGtv~~~fss~VTHLIv~~~~sdt~ky~~A~~~gi~VVT~~W 77 (1324)
++||++||.+.++..|.++|..+||.+..+|+..+||||+.... +.+|..|...+++||++.|
T Consensus 1 ~~i~~sg~~~~~~~~l~~~i~~~Gg~~~~~lt~~~THLI~~~~~--~~K~~~A~~~gi~vV~~~W 63 (63)
T PF12738_consen 1 VVICFSGFSGKERSQLRKLIEALGGKYSKDLTKKTTHLICSSPE--GKKYRKAKEWGIPVVSPDW 63 (63)
T ss_dssp -EEEEEEB-TTTCCHHHHHHHCTT-EEESSSSTT-SEEEEES----HHHHHHHHHCTSEEEEHHH
T ss_pred CEEEECCCCHHHHHHHHHHHHHCCCEEeccccCCceEEEEeCCC--cHHHHHHHHCCCcEECCCC
Confidence 57999999999999999999999999999999999999997744 8999999999999999999
No 15
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=98.86 E-value=8.8e-09 Score=89.52 Aligned_cols=71 Identities=24% Similarity=0.270 Sum_probs=62.6
Q ss_pred CcEEEEeccC-chhHHHHHHHHHhCCCEEEeccCCcceEEEeCCCCCCchHhHhhhcCCCeEecHHHHHHHHH
Q 000734 12 GVRFVLFGFD-PINERQVRSKLIDGGGVDVGLYTQSCTHVIVDKIVFDDSVCVAARTDGKTLVTSLWVDHSLD 83 (1324)
Q Consensus 12 Gv~F~IsGfd-~~~~keL~klI~~~GGtv~~~fss~VTHLIv~~~~sdt~ky~~A~~~gi~VVT~~WI~dC~~ 83 (1324)
|+.||++|+. ...+..|.++|..+||.+...++..+||||+..... ...+..+...+++||+++||.+|+.
T Consensus 1 ~~~~~i~g~~~~~~~~~l~~~i~~~Gg~v~~~~~~~~thvI~~~~~~-~~~~~~~~~~~~~iV~~~Wi~~~~~ 72 (72)
T cd00027 1 GLTFVITGDLPSEERDELKELIEKLGGKVTSSVSKKTTHVIVGSDAG-PKKLLKAIKLGIPIVTPEWLLDCLK 72 (72)
T ss_pred CCEEEEEecCCCcCHHHHHHHHHHcCCEEeccccCCceEEEECCCCC-chHHHHHHHcCCeEecHHHHHHHhC
Confidence 6899999977 778999999999999999999999999999998652 2227888999999999999999973
No 16
>KOG3226 consensus DNA repair protein [Replication, recombination and repair]
Probab=98.84 E-value=2.8e-09 Score=120.84 Aligned_cols=88 Identities=23% Similarity=0.269 Sum_probs=82.0
Q ss_pred CCCCCCCcEEEEeccCchhHHHHHHHHHhCCCEEEeccCCcceEEEeCCCCCCchHhHhhhcCCCeEecHHHHHHHHHcC
Q 000734 6 QSKPFIGVRFVLFGFDPINERQVRSKLIDGGGVDVGLYTQSCTHVIVDKIVFDDSVCVAARTDGKTLVTSLWVDHSLDIG 85 (1324)
Q Consensus 6 ~S~lF~Gv~F~IsGfd~~~~keL~klI~~~GGtv~~~fss~VTHLIv~~~~sdt~ky~~A~~~gi~VVT~~WI~dC~~~g 85 (1324)
-++||.|++|+|+||....+..|+.....+|++|.-+|+..+|||||.+.+ +++|.+....|-.||+-.||.+|+.++
T Consensus 314 l~klL~GVV~VlSGfqNP~Rs~LRskAl~LGAkY~pDW~~gsThLICAF~N--TPKy~QV~g~Gg~IV~keWI~~Cy~~k 391 (508)
T KOG3226|consen 314 LSKLLEGVVFVLSGFQNPERSTLRSKALTLGAKYQPDWNAGSTHLICAFPN--TPKYRQVEGNGGTIVSKEWITECYAQK 391 (508)
T ss_pred HHHhhhceEEEEecccCchHHHHHHHHHhhcccccCCcCCCceeEEEecCC--CcchhhcccCCceEeeHHHHHHHHHHH
Confidence 357999999999999999999999999999999999999999999999855 999999999999999999999999999
Q ss_pred CCcCcccccc
Q 000734 86 MPVDAASIMY 95 (1324)
Q Consensus 86 klLp~~~~l~ 95 (1324)
++||...|+.
T Consensus 392 k~lp~rrYlm 401 (508)
T KOG3226|consen 392 KLLPIRRYLM 401 (508)
T ss_pred hhccHHHHHh
Confidence 9999886543
No 17
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]
Probab=98.80 E-value=1.7e-09 Score=118.49 Aligned_cols=50 Identities=34% Similarity=0.929 Sum_probs=46.7
Q ss_pred ccccccCCCCCCCceEEecCCCCCCccCCcccccccCCCCCCCCCCCccCcccccC
Q 000734 1259 ITCQACGCSDRGEVMLICGDESGSVGCGVGMHIDCCDPPLESVPEEDWFCPTCTRS 1314 (1324)
Q Consensus 1259 ~~C~vC~~~~~~~~lLlCd~~~~~~~C~~~~H~~Cl~PpL~~vP~gdW~Cp~C~~~ 1314 (1324)
.+|.+||..++.++||+|| -|+++||||||.|||.+.|+|.|.|.-|...
T Consensus 282 k~csicgtsenddqllfcd------dcdrgyhmyclsppm~eppegswsc~KOG~~ 331 (336)
T KOG1244|consen 282 KYCSICGTSENDDQLLFCD------DCDRGYHMYCLSPPMVEPPEGSWSCHLCLEE 331 (336)
T ss_pred ceeccccCcCCCceeEeec------ccCCceeeEecCCCcCCCCCCchhHHHHHHH
Confidence 4699999999999999999 6999999999999999999999999999653
No 18
>KOG0966 consensus ATP-dependent DNA ligase IV [Replication, recombination and repair]
Probab=98.72 E-value=1.1e-07 Score=116.82 Aligned_cols=183 Identities=17% Similarity=0.201 Sum_probs=123.6
Q ss_pred CCCCCCCcEEEEec-cCch-hHHHHHHHHHhCCCEEEeccCCcceEEEe--CCCCCCchHhHhhhcCCCeEecHHHHHHH
Q 000734 6 QSKPFIGVRFVLFG-FDPI-NERQVRSKLIDGGGVDVGLYTQSCTHVIV--DKIVFDDSVCVAARTDGKTLVTSLWVDHS 81 (1324)
Q Consensus 6 ~S~lF~Gv~F~IsG-fd~~-~~keL~klI~~~GGtv~~~fss~VTHLIv--~~~~sdt~ky~~A~~~gi~VVT~~WI~dC 81 (1324)
-+.+|.|+.||+.. .... .+.+|+++|.++||.++.+.....||+|+ +... +....+++..+.-||.+.||.+|
T Consensus 630 ~s~if~gl~f~Vlsgt~~~~tk~~le~~ivenGG~iv~nv~p~~~~ci~~a~~et--~~vk~~~~~~~cdVl~p~Wlldc 707 (881)
T KOG0966|consen 630 ISNIFDGLEFCVLSGTSETHTKAKLEEIIVENGGKIVQNVGPSDTLCIATAGKET--TRVKAQAIKRSCDVLKPAWLLDC 707 (881)
T ss_pred hhhhhcCeeEEEecCCcccccHHHHHHHHHHcCCEEEEcCCCCCcceEEeccccc--hHHHHHHHhccCceeeHHHHHHH
Confidence 46789999999875 4433 46899999999999999999988888775 4433 66777787789999999999999
Q ss_pred HHcCCCcCcc-cccccccc---------------------c-------------------------------cccccCCC
Q 000734 82 LDIGMPVDAA-SIMYRPLK---------------------D-------------------------------LNGIHGAN 108 (1324)
Q Consensus 82 ~~~gklLp~~-~~l~~Pl~---------------------~-------------------------------~~pLp~Fs 108 (1324)
....++++.. ++++.-.. . ..++ +|.
T Consensus 708 c~~~~l~p~~P~~~fh~~e~~~~~~a~~~D~~gdSy~~di~l~~l~~~ls~~k~S~ds~~~~~~~~~~~~e~r~~~-~~~ 786 (881)
T KOG0966|consen 708 CKKQRLLPWLPRDLFHATEKGREKLAKEVDCLGDSYENDIDLEQLKKVLSGIKKSQDSLPPMGASEKDSLERRFSL-FLS 786 (881)
T ss_pred HhhhhccccccHHHHhhCchHHHHHHHHHhhhcchhhhhccHHHHHHHHhhhhhcccccCchhhhhhhcHHHhhcc-ccc
Confidence 9999887754 22221100 0 0011 122
Q ss_pred ceEEE--EcCCCcccHHHHHHHHHHhCCEecCC-----ccCCCceEEEEccCC----chHHHHHHcC-CCCeEechhHHH
Q 000734 109 SLVMC--LTGYQRQDREDIMTLVRLMGSQFSKP-----LVANKVTHLICYKFE----GEKYELAKKI-KSIKLVNHRWLE 176 (1324)
Q Consensus 109 G~vI~--~SGf~~~er~~L~~LI~alGGk~s~~-----Lls~~~THLI~~~~~----g~Ky~~Akkw-~gI~IVs~eWL~ 176 (1324)
.+++. ++++...+-..+.-.+..+||.+... +.....||+|....+ ..+...+.+. -.-+||.+.||.
T Consensus 787 ~~~~f~~~~~~~~se~~~~~l~~k~~g~~i~~~~~~~~~~~~~~t~~v~~~i~~~h~~~~~~~~~~lt~~rkv~~~~wv~ 866 (881)
T KOG0966|consen 787 SLRMFYVLRRKLSSEEVIIELKLKNFGGRITDAQSECNNIGAKYTHCVLRCIDEDHEKIKEQKKASLTIKRKVVAPSWVD 866 (881)
T ss_pred cceeeecccccccHHHHHHHHHHHHhcceeeeccchhhhcccceeeeeeeecchHHHHHHHHHHHHhcccccccCHHHHH
Confidence 22222 23343444455666677779988764 223456999987332 1223333222 122899999999
Q ss_pred HHHHhCCCCCCCCCC
Q 000734 177 DCLRVWELLPEVNYD 191 (1324)
Q Consensus 177 DCI~~gkllpE~~Y~ 191 (1324)
+|+..+.+++|..|.
T Consensus 867 ~s~~~~~~~~e~~~~ 881 (881)
T KOG0966|consen 867 HSINENCLLPEEDFP 881 (881)
T ss_pred HhhcccccCccccCC
Confidence 999999999999984
No 19
>KOG3548 consensus DNA damage checkpoint protein RHP9/CRB2/53BP1 [Replication, recombination and repair]
Probab=98.61 E-value=2e-07 Score=115.43 Aligned_cols=215 Identities=13% Similarity=0.161 Sum_probs=133.3
Q ss_pred ccccccccCCCeEEEEecChHHHHHHHHHHHHhCCEEeecC--CccCCc---------------------ccEEEcCCCC
Q 000734 1005 DKSLNKLKDEPIWFILSGHRLQRKEFQVVIRHLKGRLCRDS--HQWSYQ---------------------ATHFIAPEIR 1061 (1324)
Q Consensus 1005 ~e~~~~~k~~~~vfllSGLs~er~~L~k~Ik~LGG~V~~d~--~~~s~~---------------------~THLI~~k~~ 1061 (1324)
.+...+..=...+|+||+.....+.....+...||.|.... .-|+.. ---||+++..
T Consensus 918 Ee~~gkniFd~cvF~lTsa~~sd~~~r~s~e~~gg~vle~gl~~~Fn~p~~g~~~~lr~Ln~~q~~ks~~qalLIsdth~ 997 (1176)
T KOG3548|consen 918 EEAIGKNIFDGCVFMLTSANRSDSASRPSMEKHGGLVLEKGLMNLFNTPFKGGGIVLRQLNSFQERKSNYQALLISDTHY 997 (1176)
T ss_pred hhhhCcchhcceeEEEeccccchhhhhhhhhccCChhhhccccccccccccCCcchHHhhhHHhhhccccceeEeehhhh
Confidence 34444444445799999987656666777777777663221 001111 1248888899
Q ss_pred ccHHHHHHHhcCCeeechhHHHHHhhcCCCCCCCCccccCC-CCCccccccccchhh-hHHH-HH---hhCCCCCCCcEE
Q 000734 1062 RTEKFFAAAASGRWILKTDYLSACSQAGKFLLEEPYEWHKN-GLSEDGAINLEAPRK-WRLL-RE---RTGHGAFHGMRI 1135 (1324)
Q Consensus 1062 RT~KfL~AIA~GkWIVs~~WL~aS~kaG~fLdEe~YE~~d~-~~~~d~~~~~~aprr-wR~~-r~---~~~~~LF~G~~f 1135 (1324)
||.|||.|||+|.+.|++.||.+|.++++.+|=.+|.+-.. .+.. ...+..+++. -+.. +. ..-++.+.++.|
T Consensus 998 Rt~KYLeaLA~giPcVh~~fI~aC~e~nr~Vdy~~YLLpsGyS~rl-ds~l~~~i~~fn~~~nLkd~~l~vk~~l~~~~v 1076 (1176)
T KOG3548|consen 998 RTHKYLEALARGIPCVHNTFIQACGEQNRCVDYTDYLLPSGYSIRL-DSQLMPAIEPFNPSENLKDTTLYVKSTLSAREV 1076 (1176)
T ss_pred HHHHHHHHHHcCCCcccHHHHHHHHhccccccchhhcccCcccccc-ccccccCccccCchhhccceeeEeeccccceeE
Confidence 99999999999999999999999999999999888888652 2211 2223334331 1111 10 011456667777
Q ss_pred EEecCCCCCCHHHHHHHHHhCCcEEeccCCCcccc---cccccceeeccCCCchhhHHHHHHHhcCCceeeecceeeeee
Q 000734 1136 IVYGDCIAPPLDTLKRVVKAGDGNILATSPPYTRF---LNSGVDFAVVSPGMPRVDLWVQEFLKHEIPCVVADYLVEFVC 1212 (1324)
Q Consensus 1136 ~l~~~~v~p~~~~Lk~LIeaGGG~Vv~~~Pp~~~~---t~~~~d~~IVs~~~~~~d~~iq~l~k~GIpC~s~EyIldyvc 1212 (1324)
.+.++. ....+-+..++++||+-++...-..... +-.-.+ +|+.++.+. +.....+-..+.|+++.|||..+|
T Consensus 1077 ~q~gp~-~~f~e~~~e~le~G~aa~vd~~hada~~~D~~l~~fd-vvl~d~~~~-~svmk~ad~l~~pvvs~EWvIQti- 1152 (1176)
T KOG3548|consen 1077 TQTGPG-GTFIEIWKEILELGGAAVVDGYHADAETLDETLLKFD-VVLVDGTFR-DSVMKYADTLGAPVVSSEWVIQTI- 1152 (1176)
T ss_pred EEecCC-cchHHHHHHHHHhhchheeccccccccccccccccee-EEEecCccH-HHHHHHHHHhCCCccChhHhheee-
Confidence 777664 3457888899999998888763322111 111122 344444333 333555567889999999998876
Q ss_pred ecCcccccccccccch
Q 000734 1213 KPGYSLERHVQYNTHA 1228 (1324)
Q Consensus 1213 kp~c~Lerhvl~Nscp 1228 (1324)
++.....+|.+|
T Consensus 1153 ----I~~~~i~~~~hp 1164 (1176)
T KOG3548|consen 1153 ----ILGKAIEPNAHP 1164 (1176)
T ss_pred ----eccccCCcccCc
Confidence 344444444443
No 20
>KOG3548 consensus DNA damage checkpoint protein RHP9/CRB2/53BP1 [Replication, recombination and repair]
Probab=98.54 E-value=2.4e-07 Score=114.68 Aligned_cols=179 Identities=13% Similarity=0.137 Sum_probs=105.9
Q ss_pred CCCCCCcEEEEeccCchhHHHHHHHHHhCCCEEEec-----cCC---------------------cceEEEeCCCCCCch
Q 000734 7 SKPFIGVRFVLFGFDPINERQVRSKLIDGGGVDVGL-----YTQ---------------------SCTHVIVDKIVFDDS 60 (1324)
Q Consensus 7 S~lF~Gv~F~IsGfd~~~~keL~klI~~~GGtv~~~-----fss---------------------~VTHLIv~~~~sdt~ 60 (1324)
-.||.||.|.|++.... ....+..+..+||.+... |+. .--.||++.. +.+-
T Consensus 923 kniFd~cvF~lTsa~~s-d~~~r~s~e~~gg~vle~gl~~~Fn~p~~g~~~~lr~Ln~~q~~ks~~qalLIsdth-~Rt~ 1000 (1176)
T KOG3548|consen 923 KNIFDGCVFMLTSANRS-DSASRPSMEKHGGLVLEKGLMNLFNTPFKGGGIVLRQLNSFQERKSNYQALLISDTH-YRTH 1000 (1176)
T ss_pred cchhcceeEEEeccccc-hhhhhhhhhccCChhhhccccccccccccCCcchHHhhhHHhhhccccceeEeehhh-hHHH
Confidence 46999999999995432 234455555577766422 111 1125666653 4789
Q ss_pred HhHhhhcCCCeEecHHHHHHHHHcCCCcCccccccccccc--------ccc--ccCCCce---EEE-----------EcC
Q 000734 61 VCVAARTDGKTLVTSLWVDHSLDIGMPVDAASIMYRPLKD--------LNG--IHGANSL---VMC-----------LTG 116 (1324)
Q Consensus 61 ky~~A~~~gi~VVT~~WI~dC~~~gklLp~~~~l~~Pl~~--------~~p--Lp~FsG~---vI~-----------~SG 116 (1324)
+|..|+.+|+|+|+..||.+|+..+++++...|++..-+. ..+ .-++.++ ++. +.|
T Consensus 1001 KYLeaLA~giPcVh~~fI~aC~e~nr~Vdy~~YLLpsGyS~rlds~l~~~i~~fn~~~nLkd~~l~vk~~l~~~~v~q~g 1080 (1176)
T KOG3548|consen 1001 KYLEALARGIPCVHNTFIQACGEQNRCVDYTDYLLPSGYSIRLDSQLMPAIEPFNPSENLKDTTLYVKSTLSAREVTQTG 1080 (1176)
T ss_pred HHHHHHHcCCCcccHHHHHHHHhccccccchhhcccCccccccccccccCccccCchhhccceeeEeeccccceeEEEec
Confidence 9999999999999999999999999999976554321000 001 1122222 222 333
Q ss_pred CCcccHHHHHHHHHHhCCEecCCc-----------cCCCceEEEEccCCchHHHHHHcCCCCeEechhHHHHHHHhCCCC
Q 000734 117 YQRQDREDIMTLVRLMGSQFSKPL-----------VANKVTHLICYKFEGEKYELAKKIKSIKLVNHRWLEDCLRVWELL 185 (1324)
Q Consensus 117 f~~~er~~L~~LI~alGGk~s~~L-----------ls~~~THLI~~~~~g~Ky~~Akkw~gI~IVs~eWL~DCI~~gkll 185 (1324)
-. ...-.++.-|..+||..+-++ +..-.-||++......-.+.|-.. +.++|+.+||.+||-.+..+
T Consensus 1081 p~-~~f~e~~~e~le~G~aa~vd~~hada~~~D~~l~~fdvvl~d~~~~~svmk~ad~l-~~pvvs~EWvIQtiI~~~~i 1158 (1176)
T KOG3548|consen 1081 PG-GTFIEIWKEILELGGAAVVDGYHADAETLDETLLKFDVVLVDGTFRDSVMKYADTL-GAPVVSSEWVIQTIILGKAI 1158 (1176)
T ss_pred CC-cchHHHHHHHHHhhchheecccccccccccccccceeEEEecCccHHHHHHHHHHh-CCCccChhHhheeeeccccC
Confidence 22 223445555555555432221 112234444444333333444443 57999999999999988887
Q ss_pred CCCC
Q 000734 186 PEVN 189 (1324)
Q Consensus 186 pE~~ 189 (1324)
....
T Consensus 1159 ~~~~ 1162 (1176)
T KOG3548|consen 1159 EPNA 1162 (1176)
T ss_pred Cccc
Confidence 6543
No 21
>KOG4299 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.47 E-value=4.5e-08 Score=118.22 Aligned_cols=52 Identities=35% Similarity=0.883 Sum_probs=47.4
Q ss_pred cccccccCCCCCCCceEEecCCCCCCccCCcccccccCCC--CCCCCCCCccCcccccCc
Q 000734 1258 KITCQACGCSDRGEVMLICGDESGSVGCGVGMHIDCCDPP--LESVPEEDWFCPTCTRSR 1315 (1324)
Q Consensus 1258 ~~~C~vC~~~~~~~~lLlCd~~~~~~~C~~~~H~~Cl~Pp--L~~vP~gdW~Cp~C~~~~ 1315 (1324)
.++|..|++.+.-..+|+|| +|++.||++||.|| .+.+|.|.|||++|...-
T Consensus 253 ~~fCsaCn~~~~F~~~i~CD------~Cp~sFH~~CLePPl~~eniP~g~W~C~ec~~k~ 306 (613)
T KOG4299|consen 253 EDFCSACNGSGLFNDIICCD------GCPRSFHQTCLEPPLEPENIPPGSWFCPECKIKS 306 (613)
T ss_pred HHHHHHhCCccccccceeec------CCchHHHHhhcCCCCCcccCCCCccccCCCeeee
Confidence 67999999999878889999 89999999999999 578999999999997663
No 22
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=98.41 E-value=7.3e-08 Score=82.22 Aligned_cols=48 Identities=38% Similarity=1.023 Sum_probs=43.1
Q ss_pred cccccCCCCCCCceEEecCCCCCCccCCcccccccCCCCC--CCCCCCccCccccc
Q 000734 1260 TCQACGCSDRGEVMLICGDESGSVGCGVGMHIDCCDPPLE--SVPEEDWFCPTCTR 1313 (1324)
Q Consensus 1260 ~C~vC~~~~~~~~lLlCd~~~~~~~C~~~~H~~Cl~PpL~--~vP~gdW~Cp~C~~ 1313 (1324)
+|.+|+..++.+.||.|+ .|.+.||+.|++|++. .++.+.|+|+.|..
T Consensus 1 ~C~vC~~~~~~~~~i~C~------~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~~ 50 (51)
T PF00628_consen 1 YCPVCGQSDDDGDMIQCD------SCNRWYHQECVGPPEKAEEIPSGDWYCPNCRP 50 (51)
T ss_dssp EBTTTTSSCTTSSEEEBS------TTSCEEETTTSTSSHSHHSHHSSSBSSHHHHH
T ss_pred eCcCCCCcCCCCCeEEcC------CCChhhCcccCCCChhhccCCCCcEECcCCcC
Confidence 589999988899999999 8999999999999987 55667999999974
No 23
>PLN03122 Poly [ADP-ribose] polymerase; Provisional
Probab=98.21 E-value=2.5e-06 Score=108.45 Aligned_cols=86 Identities=22% Similarity=0.287 Sum_probs=77.7
Q ss_pred cCCCceEEEEcCCCcccHHHHHHHHHHhCCEecCCccCCCceEEEEccCC-----chHHHHHHcCCCCeEechhHHHHHH
Q 000734 105 HGANSLVMCLTGYQRQDREDIMTLVRLMGSQFSKPLVANKVTHLICYKFE-----GEKYELAKKIKSIKLVNHRWLEDCL 179 (1324)
Q Consensus 105 p~FsG~vI~~SGf~~~er~~L~~LI~alGGk~s~~Lls~~~THLI~~~~~-----g~Ky~~Akkw~gI~IVs~eWL~DCI 179 (1324)
++|.|++|+|+|.....|..++.+|+.+||+++.. + ..+||||+.... +.|+.+|+++ +|+||+.+||++|+
T Consensus 188 kpL~G~~fviTGtl~~sr~elK~~Ie~~GGkvsss-V-s~~T~lIvt~~ev~k~gsSKlkkAk~l-gIpIVsEd~L~d~i 264 (815)
T PLN03122 188 KPFSGMMISLSGRLSRTHQYWKKDIEKHGGKVANS-V-EGVTCLVVSPAERERGGSSKIAEAMER-GIPVVREAWLIDSI 264 (815)
T ss_pred CCcCCcEEEEeCCCCCCHHHHHHHHHHcCCEEccc-c-ccceEEEEcCccccccCccHHHHHHHc-CCcCccHHHHHHHH
Confidence 46999999999988778999999999999999998 5 678899987743 4799999998 99999999999999
Q ss_pred HhCCCCCCCCCCCC
Q 000734 180 RVWELLPEVNYDKS 193 (1324)
Q Consensus 180 ~~gkllpE~~Y~~~ 193 (1324)
..++.+++..|.+.
T Consensus 265 ~~~k~~~~~~y~l~ 278 (815)
T PLN03122 265 EKQEAQPLEAYDVV 278 (815)
T ss_pred hcCCcccchhhhhc
Confidence 99999999999973
No 24
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=98.14 E-value=1.2e-06 Score=99.74 Aligned_cols=53 Identities=26% Similarity=0.767 Sum_probs=43.2
Q ss_pred CcccccccccCCCCCCCceEEecCCCCCCccC-CcccccccCCCCCCCCCCCccCcccccCc
Q 000734 1255 DTDKITCQACGCSDRGEVMLICGDESGSVGCG-VGMHIDCCDPPLESVPEEDWFCPTCTRSR 1315 (1324)
Q Consensus 1255 d~~~~~C~vC~~~~~~~~lLlCd~~~~~~~C~-~~~H~~Cl~PpL~~vP~gdW~Cp~C~~~~ 1315 (1324)
.+...+| +|+ ....+.|+-||+. .|+ ..||+.|++ |...|.|.||||.|....
T Consensus 216 ~~e~~yC-~Cn-qvsyg~Mi~CDn~----~C~~eWFH~~CVG--L~~~PkgkWyC~~C~~~~ 269 (274)
T KOG1973|consen 216 PDEPTYC-ICN-QVSYGKMIGCDNP----GCPIEWFHFTCVG--LKTKPKGKWYCPRCKAEN 269 (274)
T ss_pred CCCCEEE-Eec-ccccccccccCCC----CCCcceEEEeccc--cccCCCCcccchhhhhhh
Confidence 4455667 666 4446799999965 899 779999999 999999999999998764
No 25
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=98.13 E-value=1.2e-06 Score=96.38 Aligned_cols=52 Identities=25% Similarity=0.843 Sum_probs=44.8
Q ss_pred CCcccccccccCCCCCCCceEEecCCCCCCccCCc-ccccccCCCCCCCCCCCccCccccc
Q 000734 1254 YDTDKITCQACGCSDRGEVMLICGDESGSVGCGVG-MHIDCCDPPLESVPEEDWFCPTCTR 1313 (1324)
Q Consensus 1254 ~d~~~~~C~vC~~~~~~~~lLlCd~~~~~~~C~~~-~H~~Cl~PpL~~vP~gdW~Cp~C~~ 1313 (1324)
.++...+| .|++.. .+.|+-||+. .|.+. ||+.|++ |.+.|+|.|||+.|..
T Consensus 217 se~e~lYC-fCqqvS-yGqMVaCDn~----nCkrEWFH~~CVG--Lk~pPKG~WYC~eCk~ 269 (271)
T COG5034 217 SEGEELYC-FCQQVS-YGQMVACDNA----NCKREWFHLECVG--LKEPPKGKWYCPECKK 269 (271)
T ss_pred ccCceeEE-Eecccc-cccceecCCC----CCchhheeccccc--cCCCCCCcEeCHHhHh
Confidence 36677888 898876 5689999965 99985 8999999 9999999999999975
No 26
>PLN03123 poly [ADP-ribose] polymerase; Provisional
Probab=98.12 E-value=4e-06 Score=108.55 Aligned_cols=87 Identities=18% Similarity=0.303 Sum_probs=78.8
Q ss_pred ccCCCceEEEEcCCCcccHHHHHHHHHHhCCEecCCccCCCceEEEEccC---CchHHHHHHcCCCCeEechhHHHHHHH
Q 000734 104 IHGANSLVMCLTGYQRQDREDIMTLVRLMGSQFSKPLVANKVTHLICYKF---EGEKYELAKKIKSIKLVNHRWLEDCLR 180 (1324)
Q Consensus 104 Lp~FsG~vI~~SGf~~~er~~L~~LI~alGGk~s~~Lls~~~THLI~~~~---~g~Ky~~Akkw~gI~IVs~eWL~DCI~ 180 (1324)
.++|.|+.|+++|-......+|..+|+.+||+|+.. ++..+||||+... .+.|+..|++. +|+||+.+||.||+.
T Consensus 391 ~~~l~~~~i~i~G~~~~~~~~~k~~Ie~~GG~~s~~-v~~~~t~l~tt~e~~k~~~kv~qAk~~-~ipIVsedwL~ds~~ 468 (981)
T PLN03123 391 SEFLGDLKVSIVGASKEKVTEWKAKIEEAGGVFHAT-VKKDTNCLVVCGELDDEDAEMRKARRM-KIPIVREDYLVDCFK 468 (981)
T ss_pred CCCcCCeEEEEecCCCCcHHHHHHHHHhcCCEEeee-ccCCceEEEccHHhhhcchHHHHHHhc-CCCcccHHHHHHHHh
Confidence 467999999999998888899999999999999999 7899999999853 56889999997 899999999999999
Q ss_pred hCCCCCCCCCCC
Q 000734 181 VWELLPEVNYDK 192 (1324)
Q Consensus 181 ~gkllpE~~Y~~ 192 (1324)
...++|+..|.+
T Consensus 469 ~~~~~p~~~y~~ 480 (981)
T PLN03123 469 KKKKLPFDKYKL 480 (981)
T ss_pred ccccCcchhhhh
Confidence 999999888855
No 27
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=98.09 E-value=1.3e-05 Score=99.28 Aligned_cols=170 Identities=17% Similarity=0.234 Sum_probs=121.2
Q ss_pred cEEEEeccCchhHHHHHHHHHhCCCEEEeccCCcceEEEeCCCCC----CchHhHhhhcCCCeEecHHHHHHHHHcCCCc
Q 000734 13 VRFVLFGFDPINERQVRSKLIDGGGVDVGLYTQSCTHVIVDKIVF----DDSVCVAARTDGKTLVTSLWVDHSLDIGMPV 88 (1324)
Q Consensus 13 v~F~IsGfd~~~~keL~klI~~~GGtv~~~fss~VTHLIv~~~~s----dt~ky~~A~~~gi~VVT~~WI~dC~~~gklL 88 (1324)
.+.++.|..+.+...|+.++.. ++...+...+||+|+...-. ++.+|..++..|+||++..||..|+..++++
T Consensus 479 ~~~~~s~l~p~ek~~v~~~a~~---t~~k~~~~~~thvi~~~~~~g~c~rTlk~~~gil~gkwi~~~~w~~~s~k~~~~~ 555 (684)
T KOG4362|consen 479 LVLLVSGLTPSEKQLVEKFAVD---TISKFWIEPVTHVIASTDLEGACLRTLKVLMGILRGKWILSYDWVLASLKLRKWV 555 (684)
T ss_pred eeeeeccCCcchHHHHHHHHHH---HHhhccCCCceeeeeecccccchhhhHHHHHHhhcCceeeeHHHHHHHHHhcCCC
Confidence 4556788999988888888877 78888899999999986431 5778888999999999999999999999999
Q ss_pred Cccccccc--------------cccccccccCCCceEEEEcC-CCcccHHHHHHHHHHhCCEecCC----ccCCCceEEE
Q 000734 89 DAASIMYR--------------PLKDLNGIHGANSLVMCLTG-YQRQDREDIMTLVRLMGSQFSKP----LVANKVTHLI 149 (1324)
Q Consensus 89 p~~~~l~~--------------Pl~~~~pLp~FsG~vI~~SG-f~~~er~~L~~LI~alGGk~s~~----Lls~~~THLI 149 (1324)
++..|-.. +....+....|.|+-|+|.| |...-.++|..+|..-||.+... .-..+++-++
T Consensus 556 ~eepfEl~~d~~~~~~~~~~~~~~a~s~~~kLf~gl~~~~~g~fs~~p~~~l~~l~~~~gg~~l~~~~~~~~~~k~s~~~ 635 (684)
T KOG4362|consen 556 SEEPFELQIDVPGAREGPKEKRLRAESYKPKLFEGLKFYFVGDFSNPPKEQLQELVHLAGGTILQVPRVAYSDKKKSTIV 635 (684)
T ss_pred CCCCeeEeecccCcccCcccccccccccCcchhcCCcceeecccccCcHHHHHHHHhhcCcceeeccCccccccccccee
Confidence 98743211 11122334569999998877 55677999999999999987532 0123343333
Q ss_pred EccC-------CchHHHHH---HcCCCCeEechhHHHHHHHhCCCC
Q 000734 150 CYKF-------EGEKYELA---KKIKSIKLVNHRWLEDCLRVWELL 185 (1324)
Q Consensus 150 ~~~~-------~g~Ky~~A---kkw~gI~IVs~eWL~DCI~~gkll 185 (1324)
+... ...|...| ..-.+.+.|+..||.|+|.-.+.+
T Consensus 636 ~~~~~~~~~~~~~~k~~~~ea~~~s~~a~~~~~~wvl~s~a~~~~~ 681 (684)
T KOG4362|consen 636 VLSEKPVLDSILWQKVNDAEALALSQRARAVSSSWVLDSIAGYQIL 681 (684)
T ss_pred EeecccCCCchhhhhhccHHHHHHhcCCCccchhhhhcchhceeee
Confidence 3321 11222222 111478999999999999865543
No 28
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.06 E-value=1.4e-06 Score=96.53 Aligned_cols=48 Identities=27% Similarity=0.676 Sum_probs=42.7
Q ss_pred cccccccCCCCCCCceEEecCCCCCCccCCcccccccCCCCCCCCCCCccCc-cccc
Q 000734 1258 KITCQACGCSDRGEVMLICGDESGSVGCGVGMHIDCCDPPLESVPEEDWFCP-TCTR 1313 (1324)
Q Consensus 1258 ~~~C~vC~~~~~~~~lLlCd~~~~~~~C~~~~H~~Cl~PpL~~vP~gdW~Cp-~C~~ 1313 (1324)
...|.+|++...++.||+|| .|++|||++|++ |..+|.|.|.|. .|..
T Consensus 314 C~lC~IC~~P~~E~E~~FCD------~CDRG~HT~CVG--L~~lP~G~WICD~~C~~ 362 (381)
T KOG1512|consen 314 CELCRICLGPVIESEHLFCD------VCDRGPHTLCVG--LQDLPRGEWICDMRCRE 362 (381)
T ss_pred cHhhhccCCcccchheeccc------cccCCCCccccc--cccccCccchhhhHHHH
Confidence 34588899998899999999 999999999999 999999999998 4543
No 29
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=97.79 E-value=3.7e-06 Score=112.06 Aligned_cols=55 Identities=36% Similarity=0.906 Sum_probs=50.9
Q ss_pred cccccccccCCCCCCCceEEecCCCCCCccCCcccccccCCCCCCCCCCCccCcccccCcC
Q 000734 1256 TDKITCQACGCSDRGEVMLICGDESGSVGCGVGMHIDCCDPPLESVPEEDWFCPTCTRSRI 1316 (1324)
Q Consensus 1256 ~~~~~C~vC~~~~~~~~lLlCd~~~~~~~C~~~~H~~Cl~PpL~~vP~gdW~Cp~C~~~~~ 1316 (1324)
.....|.+|......+.|++|+ .|..+||++|++|.+..+|.|+|+||.|+..+.
T Consensus 1106 ~~~~~c~~cr~k~~~~~m~lc~------~c~~~~h~~C~rp~~~~~~~~dW~C~~c~~e~~ 1160 (1404)
T KOG1245|consen 1106 AVNALCKVCRRKKQDEKMLLCD------ECLSGFHLFCLRPALSSVPPGDWMCPSCRKEHR 1160 (1404)
T ss_pred cchhhhhhhhhcccchhhhhhH------hhhhhHHHHhhhhhhccCCcCCccCCccchhhh
Confidence 4566799999999889999999 999999999999999999999999999998864
No 31
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=97.64 E-value=1.9e-05 Score=98.78 Aligned_cols=51 Identities=29% Similarity=0.847 Sum_probs=45.3
Q ss_pred CcccccccccCCCCCCCceEEecCCCCCCccCCcccccccCCCCCCCCCCCccCcccccC
Q 000734 1255 DTDKITCQACGCSDRGEVMLICGDESGSVGCGVGMHIDCCDPPLESVPEEDWFCPTCTRS 1314 (1324)
Q Consensus 1255 d~~~~~C~vC~~~~~~~~lLlCd~~~~~~~C~~~~H~~Cl~PpL~~vP~gdW~Cp~C~~~ 1314 (1324)
+.....|.+|...+ .+|+|| .|+..||++|++||+..+|.++|.|+.|...
T Consensus 44 ~~~~e~c~ic~~~g---~~l~c~------tC~~s~h~~cl~~pl~~~p~~~~~c~Rc~~p 94 (696)
T KOG0383|consen 44 DAEQEACRICADGG---ELLWCD------TCPASFHASCLGPPLTPQPNGEFICPRCFCP 94 (696)
T ss_pred hhhhhhhhhhcCCC---cEEEec------cccHHHHHHccCCCCCcCCccceeeeeeccC
Confidence 55567899999876 889999 9999999999999999999999999999544
No 32
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=97.55 E-value=3.3e-05 Score=94.19 Aligned_cols=52 Identities=38% Similarity=0.944 Sum_probs=47.6
Q ss_pred cccccccCCCCCCCceEEecCCCCCCccCCcccccccCCCCCCCCCCCccCcccccCc
Q 000734 1258 KITCQACGCSDRGEVMLICGDESGSVGCGVGMHIDCCDPPLESVPEEDWFCPTCTRSR 1315 (1324)
Q Consensus 1258 ~~~C~vC~~~~~~~~lLlCd~~~~~~~C~~~~H~~Cl~PpL~~vP~gdW~Cp~C~~~~ 1315 (1324)
...|+.|+..+++..+++|+ +|+..||.||..|+++.||.|.|+|+.|..-+
T Consensus 68 crvCe~c~~~gD~~kf~~Ck------~cDvsyh~yc~~P~~~~v~sg~~~ckk~~~c~ 119 (694)
T KOG4443|consen 68 CRVCEACGTTGDPKKFLLCK------RCDVSYHCYCQKPPNDKVPSGPWLCKKCTRCR 119 (694)
T ss_pred ceeeeeccccCCcccccccc------cccccccccccCCccccccCcccccHHHHhhh
Confidence 34589999999999999999 99999999999999999999999999996554
No 33
>PLN03122 Poly [ADP-ribose] polymerase; Provisional
Probab=97.53 E-value=0.00023 Score=91.06 Aligned_cols=90 Identities=18% Similarity=0.192 Sum_probs=73.9
Q ss_pred CCCCCCCCcEEEEeccCchhHHHHHHHHHhCCCEEEeccCCcceEEEeCCCCC--C-chHhHhhhcCCCeEecHHHHHHH
Q 000734 5 CQSKPFIGVRFVLFGFDPINERQVRSKLIDGGGVDVGLYTQSCTHVIVDKIVF--D-DSVCVAARTDGKTLVTSLWVDHS 81 (1324)
Q Consensus 5 ~~S~lF~Gv~F~IsGfd~~~~keL~klI~~~GGtv~~~fss~VTHLIv~~~~s--d-t~ky~~A~~~gi~VVT~~WI~dC 81 (1324)
.+..+|.|++|+|+|.....+.++.++|+.+||++.... ..+||+|+..... . ..++..|...|++||+..||.+|
T Consensus 185 ~~~kpL~G~~fviTGtl~~sr~elK~~Ie~~GGkvsssV-s~~T~lIvt~~ev~k~gsSKlkkAk~lgIpIVsEd~L~d~ 263 (815)
T PLN03122 185 APGKPFSGMMISLSGRLSRTHQYWKKDIEKHGGKVANSV-EGVTCLVVSPAERERGGSSKIAEAMERGIPVVREAWLIDS 263 (815)
T ss_pred ccCCCcCCcEEEEeCCCCCCHHHHHHHHHHcCCEEcccc-ccceEEEEcCccccccCccHHHHHHHcCCcCccHHHHHHH
Confidence 456789999999999444488899999999999999988 6678888775332 2 36789999999999999999999
Q ss_pred HHcCCCcCcccccc
Q 000734 82 LDIGMPVDAASIMY 95 (1324)
Q Consensus 82 ~~~gklLp~~~~l~ 95 (1324)
+..+..++...++.
T Consensus 264 i~~~k~~~~~~y~l 277 (815)
T PLN03122 264 IEKQEAQPLEAYDV 277 (815)
T ss_pred HhcCCcccchhhhh
Confidence 99998877664443
No 34
>PLN03123 poly [ADP-ribose] polymerase; Provisional
Probab=97.26 E-value=0.00053 Score=89.50 Aligned_cols=86 Identities=13% Similarity=0.111 Sum_probs=72.8
Q ss_pred CCCCCCCcEEEEeccCchhHHHHHHHHHhCCCEEEeccCCcceEEEeCCCC-CCchHhHhhhcCCCeEecHHHHHHHHHc
Q 000734 6 QSKPFIGVRFVLFGFDPINERQVRSKLIDGGGVDVGLYTQSCTHVIVDKIV-FDDSVCVAARTDGKTLVTSLWVDHSLDI 84 (1324)
Q Consensus 6 ~S~lF~Gv~F~IsGfd~~~~keL~klI~~~GGtv~~~fss~VTHLIv~~~~-sdt~ky~~A~~~gi~VVT~~WI~dC~~~ 84 (1324)
...+|.|++|+++|-.+....++.++|+.+||+++...+..+||||+.... ....++.+|...+++||+..||.+|...
T Consensus 390 ~~~~l~~~~i~i~G~~~~~~~~~k~~Ie~~GG~~s~~v~~~~t~l~tt~e~~k~~~kv~qAk~~~ipIVsedwL~ds~~~ 469 (981)
T PLN03123 390 ESEFLGDLKVSIVGASKEKVTEWKAKIEEAGGVFHATVKKDTNCLVVCGELDDEDAEMRKARRMKIPIVREDYLVDCFKK 469 (981)
T ss_pred cCCCcCCeEEEEecCCCCcHHHHHHHHHhcCCEEeeeccCCceEEEccHHhhhcchHHHHHHhcCCCcccHHHHHHHHhc
Confidence 347899999999995556668999999999999999999999999988532 2456688899999999999999999998
Q ss_pred CCCcCcc
Q 000734 85 GMPVDAA 91 (1324)
Q Consensus 85 gklLp~~ 91 (1324)
+..++..
T Consensus 470 ~~~~p~~ 476 (981)
T PLN03123 470 KKKLPFD 476 (981)
T ss_pred cccCcch
Confidence 8776654
No 35
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=97.21 E-value=0.00019 Score=93.27 Aligned_cols=55 Identities=25% Similarity=0.750 Sum_probs=47.3
Q ss_pred CcccccccccCCCCCC--CceEEecCCCCCCccCCcccccccCCCCCCCCCCCccCcccccCcCC
Q 000734 1255 DTDKITCQACGCSDRG--EVMLICGDESGSVGCGVGMHIDCCDPPLESVPEEDWFCPTCTRSRIN 1317 (1324)
Q Consensus 1255 d~~~~~C~vC~~~~~~--~~lLlCd~~~~~~~C~~~~H~~Cl~PpL~~vP~gdW~Cp~C~~~~~~ 1317 (1324)
.+.+..|.+|...+.. +.+|+|| +|+.++|++|.+ ..-+|+|.|+|..|.-+...
T Consensus 216 ~~~D~~C~iC~~~~~~n~n~ivfCD------~Cnl~VHq~Cyg--i~~ipeg~WlCr~Cl~s~~~ 272 (1051)
T KOG0955|consen 216 LEEDAVCCICLDGECQNSNVIVFCD------GCNLAVHQECYG--IPFIPEGQWLCRRCLQSPQR 272 (1051)
T ss_pred cCCCccceeecccccCCCceEEEcC------CCcchhhhhccC--CCCCCCCcEeehhhccCcCc
Confidence 3556789999998865 8999999 899999999999 55699999999999877543
No 36
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=97.13 E-value=0.00014 Score=86.09 Aligned_cols=49 Identities=29% Similarity=0.847 Sum_probs=45.2
Q ss_pred ccccccccCCCCCCCceEEecCCCCCCccCCcccccccCCCCCCCCCC----CccCccc
Q 000734 1257 DKITCQACGCSDRGEVMLICGDESGSVGCGVGMHIDCCDPPLESVPEE----DWFCPTC 1311 (1324)
Q Consensus 1257 ~~~~C~vC~~~~~~~~lLlCd~~~~~~~C~~~~H~~Cl~PpL~~vP~g----dW~Cp~C 1311 (1324)
....|.+|.+..+...++.|| .|..-||+.||+|||+.+|.- -|.|.+|
T Consensus 543 ~~ysCgiCkks~dQHll~~CD------tC~lhYHlGCL~PPLTR~Pkk~kn~gWqCsEC 595 (707)
T KOG0957|consen 543 MNYSCGICKKSTDQHLLTQCD------TCHLHYHLGCLSPPLTRLPKKNKNFGWQCSEC 595 (707)
T ss_pred cceeeeeeccchhhHHHhhcc------hhhceeeccccCCccccCcccccCcceeeccc
Confidence 446799999999999999999 999999999999999999965 4999999
No 37
>KOG2043 consensus Signaling protein SWIFT and related BRCT domain proteins [Transcription; Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.05 E-value=0.001 Score=86.01 Aligned_cols=112 Identities=19% Similarity=0.238 Sum_probs=91.0
Q ss_pred HHHHHHHHhCCCEEEeccCCcceEEEeCCCCCCchHhHhhhcCCCeEecHHHHHHHHHcCCCcCccccccc-ccccc---
Q 000734 26 RQVRSKLIDGGGVDVGLYTQSCTHVIVDKIVFDDSVCVAARTDGKTLVTSLWVDHSLDIGMPVDAASIMYR-PLKDL--- 101 (1324)
Q Consensus 26 keL~klI~~~GGtv~~~fss~VTHLIv~~~~sdt~ky~~A~~~gi~VVT~~WI~dC~~~gklLp~~~~l~~-Pl~~~--- 101 (1324)
..+...++.+||.+... ..++||+|+.... ++.++..|+..|++||++.||.+|+..+.++++..|++. +....
T Consensus 671 ~~~k~~~k~lg~s~~ss-~~e~Th~i~~rir-RT~k~Leai~~G~~ivT~~wL~s~~k~g~~~dek~yil~D~ekEk~~g 748 (896)
T KOG2043|consen 671 KNYKLAKKFLGGSVASS-DSEATHFIADRIR-RTLKFLEAISSGKPLVTPQWLVSSLKSGEKLDEKPYILHDEEKEKEFG 748 (896)
T ss_pred hhhhhHHhhccceeecc-cccceeeeehhhh-ccHHHHhhhccCCcccchHHHHHHhhccccccCccccccCHHHHhccC
Confidence 34677888888888665 3467999999765 789999999999999999999999999999998865543 21100
Q ss_pred ----------ccccCCCceEEEEcCCCcccHHHHHHHHHHhCCEecCC
Q 000734 102 ----------NGIHGANSLVMCLTGYQRQDREDIMTLVRLMGSQFSKP 139 (1324)
Q Consensus 102 ----------~pLp~FsG~vI~~SGf~~~er~~L~~LI~alGGk~s~~ 139 (1324)
..-|.|.|..||++-........|..+|+.-||.+...
T Consensus 749 f~l~ssl~RAr~~plL~g~~v~vtp~v~p~~~~v~eiie~~ggnvv~~ 796 (896)
T KOG2043|consen 749 FRLKSSLLRARADPLLEGINVHVTPSVTPSPKTVVEIIEISGGNVVSD 796 (896)
T ss_pred cchhhHHHHhhcchhhcCceEEeccccccCcchhHHHHhhcCcceecc
Confidence 11255899999999998999999999999999998876
No 38
>PRK14350 ligA NAD-dependent DNA ligase LigA; Provisional
Probab=96.99 E-value=0.0016 Score=82.45 Aligned_cols=72 Identities=18% Similarity=0.214 Sum_probs=65.7
Q ss_pred CCCceEEEEcCCC-cccHHHHHHHHHHhCCEecCCccCCCceEEEEccCCchHHHHHHcCCCCeEechhHHHHHH
Q 000734 106 GANSLVMCLTGYQ-RQDREDIMTLVRLMGSQFSKPLVANKVTHLICYKFEGEKYELAKKIKSIKLVNHRWLEDCL 179 (1324)
Q Consensus 106 ~FsG~vI~~SGf~-~~er~~L~~LI~alGGk~s~~Lls~~~THLI~~~~~g~Ky~~Akkw~gI~IVs~eWL~DCI 179 (1324)
+|.|.+|+|||-. ...|..+..+|+.+||++... +++++++||+....|.|+.+|.+. ||+|++.+.|++-+
T Consensus 593 ~l~gktfV~TG~l~~~~R~e~~~lie~~Ggkv~ss-VSkktd~LV~G~~aGsKl~KA~~L-GI~Ii~e~~f~~~l 665 (669)
T PRK14350 593 FLFGKKFCITGSFNGYSRSVLIDKLTKKGAIFNTC-VTKYLDFLLVGEKAGLKLKKANNL-GIKIMSLFDIKSYV 665 (669)
T ss_pred ccCCcEEEEecccCCCCHHHHHHHHHHcCCEEecc-ccCCCcEEEECCCCCchHHHHHHc-CCEEecHHHHHHHh
Confidence 3899999999955 568999999999999999999 899999999998888999999998 99999999997743
No 39
>PRK06063 DNA polymerase III subunit epsilon; Provisional
Probab=96.97 E-value=0.0019 Score=75.29 Aligned_cols=73 Identities=14% Similarity=0.246 Sum_probs=65.7
Q ss_pred CCCceEEEEcCCCcccHHHHHHHHHHhCCEecCCccCCCceEEEEccCCc--hHHHHHHcCCCCeEechhHHHHHHH
Q 000734 106 GANSLVMCLTGYQRQDREDIMTLVRLMGSQFSKPLVANKVTHLICYKFEG--EKYELAKKIKSIKLVNHRWLEDCLR 180 (1324)
Q Consensus 106 ~FsG~vI~~SGf~~~er~~L~~LI~alGGk~s~~Lls~~~THLI~~~~~g--~Ky~~Akkw~gI~IVs~eWL~DCI~ 180 (1324)
.|.|.+|+|||-....|..++.+|..+||++... +++++++||+....+ .|.++|+++ +|+|++.+=|++=+.
T Consensus 232 l~~g~~~v~TG~l~~~R~e~~~~~~~~G~~v~~s-Vs~~t~~lv~g~~~~~ssK~~kA~~~-gi~ii~e~~f~~ll~ 306 (313)
T PRK06063 232 LVQGMRVALSAEVSRTHEELVERILHAGLAYSDS-VDRDTSLVVCNDPAPEQGKGYHARQL-GVPVLDEAAFLELLR 306 (313)
T ss_pred ccCCCEEEEecCCCCCHHHHHHHHHHcCCEecCc-cccCccEEEECCCCCcccHHHHHHHc-CCccccHHHHHHHHH
Confidence 3789999999988789999999999999999999 899999999998766 799999998 999999887776553
No 40
>PRK07956 ligA NAD-dependent DNA ligase LigA; Validated
Probab=96.90 E-value=0.0024 Score=81.06 Aligned_cols=73 Identities=18% Similarity=0.261 Sum_probs=67.8
Q ss_pred CCceEEEEcCCCc-ccHHHHHHHHHHhCCEecCCccCCCceEEEEccCCchHHHHHHcCCCCeEechhHHHHHHHh
Q 000734 107 ANSLVMCLTGYQR-QDREDIMTLVRLMGSQFSKPLVANKVTHLICYKFEGEKYELAKKIKSIKLVNHRWLEDCLRV 181 (1324)
Q Consensus 107 FsG~vI~~SGf~~-~er~~L~~LI~alGGk~s~~Lls~~~THLI~~~~~g~Ky~~Akkw~gI~IVs~eWL~DCI~~ 181 (1324)
|.|.+|||||... ..|..+..+|+.+||+++.. ++++++.|||....+.|+.+|.++ +|+|++.+.|++.+.+
T Consensus 591 ~~g~~~v~TG~l~~~~R~e~~~~i~~~G~~v~~s-Vs~kt~~lv~G~~~gsK~~kA~~l-gI~ii~E~~f~~~l~~ 664 (665)
T PRK07956 591 LAGKTVVLTGTLEQLSRDEAKEKLEALGAKVSGS-VSKKTDLVVAGEAAGSKLAKAQEL-GIEVLDEEEFLRLLGE 664 (665)
T ss_pred ccccEEEEeCCCCCCCHHHHHHHHHHcCCEEeCc-ccCCCCEEEECCCCChHHHHHHHc-CCeEEcHHHHHHHHhc
Confidence 8999999999986 48999999999999999999 899999999998888999999998 9999999999887754
No 41
>KOG3524 consensus Predicted guanine nucleotide exchange factor (PEBBLE) [Signal transduction mechanisms]
Probab=96.84 E-value=0.00059 Score=83.88 Aligned_cols=80 Identities=31% Similarity=0.544 Sum_probs=70.4
Q ss_pred cccccccccccCCCceEEEEcCCCcccHHHHHHHHHHhCCEecCCccCCCceEEEEccCCchHHHHHHcCCCCeEechhH
Q 000734 95 YRPLKDLNGIHGANSLVMCLTGYQRQDREDIMTLVRLMGSQFSKPLVANKVTHLICYKFEGEKYELAKKIKSIKLVNHRW 174 (1324)
Q Consensus 95 ~~Pl~~~~pLp~FsG~vI~~SGf~~~er~~L~~LI~alGGk~s~~Lls~~~THLI~~~~~g~Ky~~Akkw~gI~IVs~eW 174 (1324)
.+|+++ ..|.+++.||+|+..... .+.++|..|||.+..+ ...++||+|+....+.||..|.. +.+++.++|
T Consensus 111 srply~----~~m~~vvlcfTg~rkk~e-~lv~lvh~mgg~irkd-~nsktthli~n~s~gek~~~a~t--~~~~~rp~w 182 (850)
T KOG3524|consen 111 ARPLYC----ELMKDVVMCFTGERKKKE-ELVDLVHYMGGSIRKD-TNSKTTHLIANKVEGEKQSIALV--GVPTMRPDW 182 (850)
T ss_pred CCcccc----hhhcCceeeeeccchhhH-HHHHHHHHhcceeEee-eccCceEEEeecccceEEEEEee--ccceechHh
Confidence 456554 248999999999998777 9999999999999999 58889999999999999999987 489999999
Q ss_pred HHHHHHhC
Q 000734 175 LEDCLRVW 182 (1324)
Q Consensus 175 L~DCI~~g 182 (1324)
|..||...
T Consensus 183 v~~aw~~r 190 (850)
T KOG3524|consen 183 VTEAWKHR 190 (850)
T ss_pred hhhhhcCc
Confidence 99999853
No 42
>KOG2481 consensus Protein required for normal rRNA processing [RNA processing and modification]
Probab=96.74 E-value=0.0012 Score=79.20 Aligned_cols=79 Identities=22% Similarity=0.209 Sum_probs=58.3
Q ss_pred CCCCCcEEEEeccCchhHHHHHHHHHhCCCEEEecc-------C---CcceEEEeCCCCCCchHhHhhhcCCCeEecHHH
Q 000734 8 KPFIGVRFVLFGFDPINERQVRSKLIDGGGVDVGLY-------T---QSCTHVIVDKIVFDDSVCVAARTDGKTLVTSLW 77 (1324)
Q Consensus 8 ~lF~Gv~F~IsGfd~~~~keL~klI~~~GGtv~~~f-------s---s~VTHLIv~~~~sdt~ky~~A~~~gi~VVT~~W 77 (1324)
.||.|++|+|.--- -+..|+-+|..+||.|+-+- . ..+||=||+.... .-.-.|...|.|+|
T Consensus 326 slF~glkFfl~reV--PresL~fiI~s~GG~V~wd~~~~g~~~~~~d~~ITH~IvDrP~~------~~~v~gR~YvQPQW 397 (570)
T KOG2481|consen 326 SLFSGLKFFLNREV--PRESLEFIIRSFGGKVSWDPLGIGATYDESDERITHQIVDRPGQ------QTSVIGRTYVQPQW 397 (570)
T ss_pred HHhhcceeeeeccC--chHHHHHHHHHcCCceecCccCCCCcccccccceeeeeecccCc------cceeeeeeeecchh
Confidence 58999999987532 36678999999999998651 1 2479999987541 11122345689999
Q ss_pred HHHHHHcCCCcCccccc
Q 000734 78 VDHSLDIGMPVDAASIM 94 (1324)
Q Consensus 78 I~dC~~~gklLp~~~~l 94 (1324)
|+||+..+.+++...|+
T Consensus 398 vfDsvNar~llpt~~Y~ 414 (570)
T KOG2481|consen 398 VFDSVNARLLLPTEKYF 414 (570)
T ss_pred hhhhccchhhccHhhhC
Confidence 99999999999876543
No 43
>PRK14351 ligA NAD-dependent DNA ligase LigA; Provisional
Probab=96.72 E-value=0.0043 Score=79.05 Aligned_cols=74 Identities=19% Similarity=0.238 Sum_probs=67.6
Q ss_pred CCCceEEEEcCCCc-ccHHHHHHHHHHhCCEecCCccCCCceEEEEccCCc-hHHHHHHcCCCCeEechhHHHHHHHh
Q 000734 106 GANSLVMCLTGYQR-QDREDIMTLVRLMGSQFSKPLVANKVTHLICYKFEG-EKYELAKKIKSIKLVNHRWLEDCLRV 181 (1324)
Q Consensus 106 ~FsG~vI~~SGf~~-~er~~L~~LI~alGGk~s~~Lls~~~THLI~~~~~g-~Ky~~Akkw~gI~IVs~eWL~DCI~~ 181 (1324)
+|.|.+|||||... ..|.+++.+|+.+||++... +++++++||+....+ .|+.+|.+. +|+|++.+.|++-+..
T Consensus 609 ~l~g~~~v~TG~l~~~~R~~~~~~i~~~Gg~v~~s-Vs~kt~~Lv~G~~~g~sKl~kA~~l-gi~ii~E~~f~~ll~~ 684 (689)
T PRK14351 609 ALDGLTFVFTGSLSGYTRSEAQELVEAHGGNATGS-VSGNTDYLVVGENPGQSKRDDAEAN-DVPTLDEEEFEELLAE 684 (689)
T ss_pred CCCCcEEEEccCCCCCCHHHHHHHHHHcCCEEcCC-cCCCccEEEEcCCCChhHHHHHHHC-CCeEecHHHHHHHHHh
Confidence 48999999999885 48999999999999999999 899999999998777 799999997 9999999999887764
No 44
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=96.70 E-value=0.00073 Score=82.75 Aligned_cols=51 Identities=25% Similarity=0.708 Sum_probs=43.0
Q ss_pred cccccccCCCC--CCCceEEecCCCCCCccCCcccccccCCCCCCCCCCCccCcccccC
Q 000734 1258 KITCQACGCSD--RGEVMLICGDESGSVGCGVGMHIDCCDPPLESVPEEDWFCPTCTRS 1314 (1324)
Q Consensus 1258 ~~~C~vC~~~~--~~~~lLlCd~~~~~~~C~~~~H~~Cl~PpL~~vP~gdW~Cp~C~~~ 1314 (1324)
...|.||-.-. .+..|++||+ +.|..+-|.-|++ +..||.|.|||..|...
T Consensus 5 VGGCCVCSDErGWaeNPLVYCDG----~nCsVAVHQaCYG--IvqVPtGpWfCrKCesq 57 (900)
T KOG0956|consen 5 VGGCCVCSDERGWAENPLVYCDG----HNCSVAVHQACYG--IVQVPTGPWFCRKCESQ 57 (900)
T ss_pred ccceeeecCcCCCccCceeeecC----CCceeeeehhcce--eEecCCCchhhhhhhhh
Confidence 34588997653 3579999995 5999999999999 88999999999999654
No 45
>PRK14350 ligA NAD-dependent DNA ligase LigA; Provisional
Probab=96.65 E-value=0.0047 Score=78.44 Aligned_cols=76 Identities=16% Similarity=0.221 Sum_probs=67.6
Q ss_pred CCCCCCcEEEEec-cCchhHHHHHHHHHhCCCEEEeccCCcceEEEeCCCCCCchHhHhhhcCCCeEecHHHHHHHHHc
Q 000734 7 SKPFIGVRFVLFG-FDPINERQVRSKLIDGGGVDVGLYTQSCTHVIVDKIVFDDSVCVAARTDGKTLVTSLWVDHSLDI 84 (1324)
Q Consensus 7 S~lF~Gv~F~IsG-fd~~~~keL~klI~~~GGtv~~~fss~VTHLIv~~~~sdt~ky~~A~~~gi~VVT~~WI~dC~~~ 84 (1324)
..+|.|++||||| |..-.|.++.++|+++||++....+..+++||++... +.+...|...|++|++...+.+.++.
T Consensus 591 ~~~l~gktfV~TG~l~~~~R~e~~~lie~~Ggkv~ssVSkktd~LV~G~~a--GsKl~KA~~LGI~Ii~e~~f~~~l~~ 667 (669)
T PRK14350 591 NSFLFGKKFCITGSFNGYSRSVLIDKLTKKGAIFNTCVTKYLDFLLVGEKA--GLKLKKANNLGIKIMSLFDIKSYVDL 667 (669)
T ss_pred CCccCCcEEEEecccCCCCHHHHHHHHHHcCCEEeccccCCCcEEEECCCC--CchHHHHHHcCCEEecHHHHHHHhcC
Confidence 3579999999999 6666899999999999999999999999999999754 68999999999999999888876653
No 46
>PRK06195 DNA polymerase III subunit epsilon; Validated
Probab=96.56 E-value=0.006 Score=70.91 Aligned_cols=74 Identities=24% Similarity=0.304 Sum_probs=63.2
Q ss_pred CCCceEEEEcCCC-cccHHHHHHHHHHhCCEecCCccCCCceEEEEccC---------CchHHHHHHcC----CCCeEec
Q 000734 106 GANSLVMCLTGYQ-RQDREDIMTLVRLMGSQFSKPLVANKVTHLICYKF---------EGEKYELAKKI----KSIKLVN 171 (1324)
Q Consensus 106 ~FsG~vI~~SGf~-~~er~~L~~LI~alGGk~s~~Lls~~~THLI~~~~---------~g~Ky~~Akkw----~gI~IVs 171 (1324)
+|.|.+|+|||-. ...|..+..+|..+||++... +++++++||+... .+.|+++|.++ .+|+|++
T Consensus 220 ~l~g~~~vfTG~l~~~~R~~~~~~~~~~Gg~v~~s-Vs~~t~~lV~G~~~~~~~~~~~~~~K~~kA~~l~~~g~~i~ii~ 298 (309)
T PRK06195 220 AFKEEVVVFTGGLASMTRDEAMILVRRLGGTVGSS-VTKKTTYLVTNTKDIEDLNREEMSNKLKKAIDLKKKGQNIKFLN 298 (309)
T ss_pred cccCCEEEEccccCCCCHHHHHHHHHHhCCEecCC-cccCceEEEECCCcchhhcccCcChHHHHHHHHHhCCCCcEEec
Confidence 5899999999987 478999999999999999999 8999999999853 46899999875 3899998
Q ss_pred hhHHHHHHH
Q 000734 172 HRWLEDCLR 180 (1324)
Q Consensus 172 ~eWL~DCI~ 180 (1324)
.+=+++=+.
T Consensus 299 E~~f~~l~~ 307 (309)
T PRK06195 299 EEEFLQKCK 307 (309)
T ss_pred HHHHHHHHh
Confidence 876665443
No 47
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=96.53 E-value=0.001 Score=79.97 Aligned_cols=53 Identities=32% Similarity=0.843 Sum_probs=42.1
Q ss_pred cccccccCCCC--CCCceEEecCCCCCCccCCcccccccCCCCCCC----CCCCccCcccccCcC
Q 000734 1258 KITCQACGCSD--RGEVMLICGDESGSVGCGVGMHIDCCDPPLESV----PEEDWFCPTCTRSRI 1316 (1324)
Q Consensus 1258 ~~~C~vC~~~~--~~~~lLlCd~~~~~~~C~~~~H~~Cl~PpL~~v----P~gdW~Cp~C~~~~~ 1316 (1324)
+..|.+|.++. ..+.||.|+ +|...||.-|..|+.+.. |...|||..|.....
T Consensus 168 n~qc~vC~~g~~~~~NrmlqC~------~C~~~fHq~Chqp~i~~~l~~D~~~~w~C~~C~~~~~ 226 (464)
T KOG4323|consen 168 NLQCSVCYCGGPGAGNRMLQCD------KCRQWYHQACHQPLIKDELAGDPFYEWFCDVCNRGPK 226 (464)
T ss_pred cceeeeeecCCcCccceeeeec------ccccHHHHHhccCCCCHhhccCccceEeehhhccchh
Confidence 34488887664 457999999 999999999999996443 566799999977653
No 48
>TIGR00575 dnlj DNA ligase, NAD-dependent. The member of this family from Treponema pallidum differs in having three rather than just one copy of the BRCT (BRCA1 C Terminus) domain (pfam00533) at the C-terminus. It is included in the seed.
Probab=96.42 E-value=0.0052 Score=78.03 Aligned_cols=67 Identities=21% Similarity=0.310 Sum_probs=61.2
Q ss_pred CCCceEEEEcCCCc-ccHHHHHHHHHHhCCEecCCccCCCceEEEEccCCchHHHHHHcCCCCeEechhH
Q 000734 106 GANSLVMCLTGYQR-QDREDIMTLVRLMGSQFSKPLVANKVTHLICYKFEGEKYELAKKIKSIKLVNHRW 174 (1324)
Q Consensus 106 ~FsG~vI~~SGf~~-~er~~L~~LI~alGGk~s~~Lls~~~THLI~~~~~g~Ky~~Akkw~gI~IVs~eW 174 (1324)
+|.|.+|||||... ..|.++..+|+.+||++... +++++++||+....+.|+++|.+. +|+|++.+.
T Consensus 584 ~l~gk~~v~TG~l~~~~R~~~~~~i~~~G~~v~~s-Vs~kt~~lv~G~~~gsKl~kA~~l-gi~ii~E~~ 651 (652)
T TIGR00575 584 PLAGKTFVLTGTLSQMSRDEAKELLENLGGKVASS-VSKKTDYVIAGEKAGSKLAKAQEL-GIPIINEEE 651 (652)
T ss_pred CccCcEEEEeccCCCCCHHHHHHHHHHcCCEEeCC-cCCCccEEEECCCCChHHHHHHHc-CCcEechhh
Confidence 48999999999765 68999999999999999999 899999999998888899999997 999998654
No 49
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=96.33 E-value=0.0017 Score=77.06 Aligned_cols=55 Identities=24% Similarity=0.713 Sum_probs=46.4
Q ss_pred CCCcccccccccCCCCC--CCceEEecCCCCCCccCCcccccccCCCCCCCCCCCccCcccccCc
Q 000734 1253 DYDTDKITCQACGCSDR--GEVMLICGDESGSVGCGVGMHIDCCDPPLESVPEEDWFCPTCTRSR 1315 (1324)
Q Consensus 1253 ~~d~~~~~C~vC~~~~~--~~~lLlCd~~~~~~~C~~~~H~~Cl~PpL~~vP~gdW~Cp~C~~~~ 1315 (1324)
.+|.-+..|.+|...++ .+-+++|| +|+-.-|..|.+ +.-+|+|.|+|..|.-..
T Consensus 188 ~~d~~d~~C~~c~~t~~eN~naiVfCd------gC~i~VHq~CYG--I~f~peG~WlCrkCi~~~ 244 (669)
T COG5141 188 PSDEFDDICTKCTSTHNENSNAIVFCD------GCEICVHQSCYG--IQFLPEGFWLCRKCIYGE 244 (669)
T ss_pred CchhhhhhhHhccccccCCcceEEEec------Ccchhhhhhccc--ceecCcchhhhhhhcccc
Confidence 33456788999998875 47899999 999999999999 668999999999997553
No 50
>KOG0954 consensus PHD finger protein [General function prediction only]
Probab=96.31 E-value=0.0015 Score=80.72 Aligned_cols=50 Identities=30% Similarity=0.888 Sum_probs=45.0
Q ss_pred ccccccccCCCCC--CCceEEecCCCCCCccCCcccccccCCCCCCCCCCCccCcccccC
Q 000734 1257 DKITCQACGCSDR--GEVMLICGDESGSVGCGVGMHIDCCDPPLESVPEEDWFCPTCTRS 1314 (1324)
Q Consensus 1257 ~~~~C~vC~~~~~--~~~lLlCd~~~~~~~C~~~~H~~Cl~PpL~~vP~gdW~Cp~C~~~ 1314 (1324)
++..|.+|..++. .+.|++|| .|...-|+.|.+ +.++|+|.|.|..|.-.
T Consensus 270 edviCDvCrspD~e~~neMVfCd------~Cn~cVHqaCyG--Ile~p~gpWlCr~Calg 321 (893)
T KOG0954|consen 270 EDVICDVCRSPDSEEANEMVFCD------KCNICVHQACYG--ILEVPEGPWLCRTCALG 321 (893)
T ss_pred ccceeceecCCCccccceeEEec------cchhHHHHhhhc--eeecCCCCeeehhcccc
Confidence 6778999999864 58999999 999999999999 89999999999999654
No 51
>KOG0323 consensus TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=96.29 E-value=0.0022 Score=80.04 Aligned_cols=88 Identities=24% Similarity=0.296 Sum_probs=77.0
Q ss_pred CCCceEEEEcCCCcc----cHHHHHHHHHHhCCEecCCccCCCceEEEEccCCchHHHHHHcCCCCeEechhHHHHHHHh
Q 000734 106 GANSLVMCLTGYQRQ----DREDIMTLVRLMGSQFSKPLVANKVTHLICYKFEGEKYELAKKIKSIKLVNHRWLEDCLRV 181 (1324)
Q Consensus 106 ~FsG~vI~~SGf~~~----er~~L~~LI~alGGk~s~~Lls~~~THLI~~~~~g~Ky~~Akkw~gI~IVs~eWL~DCI~~ 181 (1324)
.+.|+.+.|+|+.+. .+..+-.....+|+....+ ++..+||+|...+...|..+|.....++||++.|||.|+..
T Consensus 441 v~~~~~~vfSg~~P~~~~~~~s~~~~~~~~~g~vs~~~-~~~~~th~i~~~~gt~k~~~a~~~~~~~Vv~~~wl~~~~e~ 519 (635)
T KOG0323|consen 441 VLKGSQIVFSGLHPTGSTDESADILGVAQQLGAVSAPD-VSDKTTHLIAANAGTKKVYKAVVSGSAKVVNAAWLWRSLEK 519 (635)
T ss_pred HhhccceeecccccCcCCcchhhhhhhhhcccceeccc-ccchhhhHHhhccCcceeeccccccceeEechhHHHHHHHH
Confidence 367899999997753 4567777888999999988 78999999999999999999988767999999999999999
Q ss_pred CCCCCCCCCCCCC
Q 000734 182 WELLPEVNYDKSG 194 (1324)
Q Consensus 182 gkllpE~~Y~~~g 194 (1324)
|..+.+..|....
T Consensus 520 w~~v~ek~~~l~~ 532 (635)
T KOG0323|consen 520 WGKVEEKLEPLDD 532 (635)
T ss_pred hcchhcccccccc
Confidence 9999999998644
No 52
>COG0272 Lig NAD-dependent DNA ligase (contains BRCT domain type II) [DNA replication, recombination, and repair]
Probab=96.24 E-value=0.0099 Score=74.43 Aligned_cols=71 Identities=18% Similarity=0.307 Sum_probs=66.1
Q ss_pred cCCCceEEEEcCCCc-ccHHHHHHHHHHhCCEecCCccCCCceEEEEccCCchHHHHHHcCCCCeEechhHHHH
Q 000734 105 HGANSLVMCLTGYQR-QDREDIMTLVRLMGSQFSKPLVANKVTHLICYKFEGEKYELAKKIKSIKLVNHRWLED 177 (1324)
Q Consensus 105 p~FsG~vI~~SGf~~-~er~~L~~LI~alGGk~s~~Lls~~~THLI~~~~~g~Ky~~Akkw~gI~IVs~eWL~D 177 (1324)
.+|.|.+|+|||-.. ..|+.++.+++.+||+++.. ++++++.||+....|.|+.+|.+. +|+|.+.+|+..
T Consensus 593 ~~l~gkt~V~TGtL~~~sR~eak~~le~lGakv~~S-VSkktD~vvaG~~aGSKl~kA~eL-gv~i~~E~~~~~ 664 (667)
T COG0272 593 SPLAGKTFVLTGTLEGMSRDEAKALLEALGAKVSGS-VSKKTDYVVAGENAGSKLAKAQEL-GVKIIDEEEFLA 664 (667)
T ss_pred cccCCCEEEEeccCCCCCHHHHHHHHHHcCCEEece-ecccccEEEEcCCCChHHHHHHHc-CCeEecHHHHHH
Confidence 558999999999776 78999999999999999999 899999999999999999999998 999999998865
No 53
>COG5163 NOP7 Protein required for biogenesis of the 60S ribosomal subunit [Translation, ribosomal structure and biogenesis]
Probab=96.21 E-value=0.0039 Score=72.72 Aligned_cols=78 Identities=23% Similarity=0.365 Sum_probs=57.3
Q ss_pred CCCCCcEEEEeccCchhHHHHHHHHHhCCCEEEec-----------cCCcceEEEeCCCCCCchHhHhhhcCCCeEecHH
Q 000734 8 KPFIGVRFVLFGFDPINERQVRSKLIDGGGVDVGL-----------YTQSCTHVIVDKIVFDDSVCVAARTDGKTLVTSL 76 (1324)
Q Consensus 8 ~lF~Gv~F~IsGfd~~~~keL~klI~~~GGtv~~~-----------fss~VTHLIv~~~~sdt~ky~~A~~~gi~VVT~~ 76 (1324)
.||.|++|||+.-- ....|+-+|..+||.+... .+..+||-||+... - .-.-.|...|.|+
T Consensus 349 slFS~f~FyisreV--p~dsLefiilscGG~V~~~p~~~~i~~~~~vD~~vth~i~drp~-----~-~~kvegrtYiQPQ 420 (591)
T COG5163 349 SLFSGFKFYISREV--PGDSLEFIILSCGGSVVGSPCEADIHVSEKVDEKVTHQIVDRPV-----M-KNKVEGRTYIQPQ 420 (591)
T ss_pred hhhhceEEEEeccc--cchHHHHHHHHcCCcccCchhhccCCchhhccchhhhhhccchh-----h-hhhhcceeeechH
Confidence 48999999987532 2456888999999999754 23468898888632 1 1223455568999
Q ss_pred HHHHHHHcCCCcCcccc
Q 000734 77 WVDHSLDIGMPVDAASI 93 (1324)
Q Consensus 77 WI~dC~~~gklLp~~~~ 93 (1324)
||++|+..|.+...+.|
T Consensus 421 w~fDsiNkG~l~~~~~Y 437 (591)
T COG5163 421 WLFDSINKGKLACVENY 437 (591)
T ss_pred HHHhhhccccchhhhhc
Confidence 99999999998876643
No 54
>PRK07956 ligA NAD-dependent DNA ligase LigA; Validated
Probab=96.18 E-value=0.017 Score=73.66 Aligned_cols=75 Identities=17% Similarity=0.117 Sum_probs=66.0
Q ss_pred CCCCCcEEEEeccC-chhHHHHHHHHHhCCCEEEeccCCcceEEEeCCCCCCchHhHhhhcCCCeEecHHHHHHHHHc
Q 000734 8 KPFIGVRFVLFGFD-PINERQVRSKLIDGGGVDVGLYTQSCTHVIVDKIVFDDSVCVAARTDGKTLVTSLWVDHSLDI 84 (1324)
Q Consensus 8 ~lF~Gv~F~IsGfd-~~~~keL~klI~~~GGtv~~~fss~VTHLIv~~~~sdt~ky~~A~~~gi~VVT~~WI~dC~~~ 84 (1324)
..|.|.+|||+|.- .-.|.++.++|+.+||.+....+..+++||++... +.+...|...|++|++...+.+.+..
T Consensus 589 ~~~~g~~~v~TG~l~~~~R~e~~~~i~~~G~~v~~sVs~kt~~lv~G~~~--gsK~~kA~~lgI~ii~E~~f~~~l~~ 664 (665)
T PRK07956 589 VDLAGKTVVLTGTLEQLSRDEAKEKLEALGAKVSGSVSKKTDLVVAGEAA--GSKLAKAQELGIEVLDEEEFLRLLGE 664 (665)
T ss_pred CCccccEEEEeCCCCCCCHHHHHHHHHHcCCEEeCcccCCCCEEEECCCC--ChHHHHHHHcCCeEEcHHHHHHHHhc
Confidence 35999999999954 44899999999999999999999999999999754 68999999999999998888877653
No 55
>PRK06063 DNA polymerase III subunit epsilon; Provisional
Probab=96.18 E-value=0.014 Score=68.24 Aligned_cols=75 Identities=12% Similarity=0.077 Sum_probs=64.3
Q ss_pred CCCCCcEEEEeccCchhHHHHHHHHHhCCCEEEeccCCcceEEEeCCCCCCchHhHhhhcCCCeEecHHHHHHHH
Q 000734 8 KPFIGVRFVLFGFDPINERQVRSKLIDGGGVDVGLYTQSCTHVIVDKIVFDDSVCVAARTDGKTLVTSLWVDHSL 82 (1324)
Q Consensus 8 ~lF~Gv~F~IsGfd~~~~keL~klI~~~GGtv~~~fss~VTHLIv~~~~sdt~ky~~A~~~gi~VVT~~WI~dC~ 82 (1324)
.+|.|.+|+|+|--...|.++.++|..+||.+....+..+++||++.......|...|...|++|++..=+.+.+
T Consensus 231 ~l~~g~~~v~TG~l~~~R~e~~~~~~~~G~~v~~sVs~~t~~lv~g~~~~~ssK~~kA~~~gi~ii~e~~f~~ll 305 (313)
T PRK06063 231 PLVQGMRVALSAEVSRTHEELVERILHAGLAYSDSVDRDTSLVVCNDPAPEQGKGYHARQLGVPVLDEAAFLELL 305 (313)
T ss_pred cccCCCEEEEecCCCCCHHHHHHHHHHcCCEecCccccCccEEEECCCCCcccHHHHHHHcCCccccHHHHHHHH
Confidence 468999999999333689999999999999999999999999999976533478999999999999987666655
No 56
>COG0272 Lig NAD-dependent DNA ligase (contains BRCT domain type II) [DNA replication, recombination, and repair]
Probab=96.04 E-value=0.017 Score=72.49 Aligned_cols=72 Identities=18% Similarity=0.212 Sum_probs=65.9
Q ss_pred CCCCCcEEEEec-cCchhHHHHHHHHHhCCCEEEeccCCcceEEEeCCCCCCchHhHhhhcCCCeEecHHHHHHH
Q 000734 8 KPFIGVRFVLFG-FDPINERQVRSKLIDGGGVDVGLYTQSCTHVIVDKIVFDDSVCVAARTDGKTLVTSLWVDHS 81 (1324)
Q Consensus 8 ~lF~Gv~F~IsG-fd~~~~keL~klI~~~GGtv~~~fss~VTHLIv~~~~sdt~ky~~A~~~gi~VVT~~WI~dC 81 (1324)
.+|.|++|+++| +..-.|.+...+|+.+||++.+..+..+++||++... +.++..|...|+.|++..|+..-
T Consensus 593 ~~l~gkt~V~TGtL~~~sR~eak~~le~lGakv~~SVSkktD~vvaG~~a--GSKl~kA~eLgv~i~~E~~~~~l 665 (667)
T COG0272 593 SPLAGKTFVLTGTLEGMSRDEAKALLEALGAKVSGSVSKKTDYVVAGENA--GSKLAKAQELGVKIIDEEEFLAL 665 (667)
T ss_pred cccCCCEEEEeccCCCCCHHHHHHHHHHcCCEEeceecccccEEEEcCCC--ChHHHHHHHcCCeEecHHHHHHh
Confidence 679999999999 6667899999999999999999999999999999865 78999999999999998887754
No 57
>PRK06195 DNA polymerase III subunit epsilon; Validated
Probab=96.04 E-value=0.018 Score=66.98 Aligned_cols=74 Identities=11% Similarity=-0.019 Sum_probs=60.3
Q ss_pred CCCCCcEEEEec-cCchhHHHHHHHHHhCCCEEEeccCCcceEEEeCCCC-------CCchHhHhhhcC-----CCeEec
Q 000734 8 KPFIGVRFVLFG-FDPINERQVRSKLIDGGGVDVGLYTQSCTHVIVDKIV-------FDDSVCVAARTD-----GKTLVT 74 (1324)
Q Consensus 8 ~lF~Gv~F~IsG-fd~~~~keL~klI~~~GGtv~~~fss~VTHLIv~~~~-------sdt~ky~~A~~~-----gi~VVT 74 (1324)
.+|.|.+|||+| |..-.|.++.++|+.+||.+....+.++++||++... ..+.|...|... +++|++
T Consensus 219 ~~l~g~~~vfTG~l~~~~R~~~~~~~~~~Gg~v~~sVs~~t~~lV~G~~~~~~~~~~~~~~K~~kA~~l~~~g~~i~ii~ 298 (309)
T PRK06195 219 TAFKEEVVVFTGGLASMTRDEAMILVRRLGGTVGSSVTKKTTYLVTNTKDIEDLNREEMSNKLKKAIDLKKKGQNIKFLN 298 (309)
T ss_pred ccccCCEEEEccccCCCCHHHHHHHHHHhCCEecCCcccCceEEEECCCcchhhcccCcChHHHHHHHHHhCCCCcEEec
Confidence 469999999999 6566899999999999999999999999999999643 124577777666 899998
Q ss_pred HHHHHHH
Q 000734 75 SLWVDHS 81 (1324)
Q Consensus 75 ~~WI~dC 81 (1324)
..=+.+.
T Consensus 299 E~~f~~l 305 (309)
T PRK06195 299 EEEFLQK 305 (309)
T ss_pred HHHHHHH
Confidence 6544443
No 58
>PRK14351 ligA NAD-dependent DNA ligase LigA; Provisional
Probab=96.03 E-value=0.019 Score=73.26 Aligned_cols=76 Identities=14% Similarity=0.143 Sum_probs=66.9
Q ss_pred CCCCCCcEEEEecc-CchhHHHHHHHHHhCCCEEEeccCCcceEEEeCCCCCCc-hHhHhhhcCCCeEecHHHHHHHHHc
Q 000734 7 SKPFIGVRFVLFGF-DPINERQVRSKLIDGGGVDVGLYTQSCTHVIVDKIVFDD-SVCVAARTDGKTLVTSLWVDHSLDI 84 (1324)
Q Consensus 7 S~lF~Gv~F~IsGf-d~~~~keL~klI~~~GGtv~~~fss~VTHLIv~~~~sdt-~ky~~A~~~gi~VVT~~WI~dC~~~ 84 (1324)
..+|.|.+|||+|. ..-.|.++.++|+.+||.+....+..+++||++... + .+...|...|++|++...+.+.+..
T Consensus 607 ~~~l~g~~~v~TG~l~~~~R~~~~~~i~~~Gg~v~~sVs~kt~~Lv~G~~~--g~sKl~kA~~lgi~ii~E~~f~~ll~~ 684 (689)
T PRK14351 607 GDALDGLTFVFTGSLSGYTRSEAQELVEAHGGNATGSVSGNTDYLVVGENP--GQSKRDDAEANDVPTLDEEEFEELLAE 684 (689)
T ss_pred CCCCCCcEEEEccCCCCCCHHHHHHHHHHcCCEEcCCcCCCccEEEEcCCC--ChhHHHHHHHCCCeEecHHHHHHHHHh
Confidence 45799999999994 445899999999999999999999999999999754 5 6899999999999999888887764
No 59
>KOG0966 consensus ATP-dependent DNA ligase IV [Replication, recombination and repair]
Probab=95.92 E-value=0.017 Score=72.71 Aligned_cols=85 Identities=21% Similarity=0.301 Sum_probs=68.9
Q ss_pred CCCceEEEE-cCCCccc-HHHHHHHHHHhCCEecCCccCCCceEEEEcc--C-CchHHHHHHcCCCCeEechhHHHHHHH
Q 000734 106 GANSLVMCL-TGYQRQD-REDIMTLVRLMGSQFSKPLVANKVTHLICYK--F-EGEKYELAKKIKSIKLVNHRWLEDCLR 180 (1324)
Q Consensus 106 ~FsG~vI~~-SGf~~~e-r~~L~~LI~alGGk~s~~Lls~~~THLI~~~--~-~g~Ky~~Akkw~gI~IVs~eWL~DCI~ 180 (1324)
.|.|+.||+ +|..... +..++.+|..+||.+... +....||.|+.. . ...|+..+.+ ...||.+.||.||+.
T Consensus 633 if~gl~f~Vlsgt~~~~tk~~le~~ivenGG~iv~n-v~p~~~~ci~~a~~et~~vk~~~~~~--~cdVl~p~Wlldcc~ 709 (881)
T KOG0966|consen 633 IFDGLEFCVLSGTSETHTKAKLEEIIVENGGKIVQN-VGPSDTLCIATAGKETTRVKAQAIKR--SCDVLKPAWLLDCCK 709 (881)
T ss_pred hhcCeeEEEecCCcccccHHHHHHHHHHcCCEEEEc-CCCCCcceEEeccccchHHHHHHHhc--cCceeeHHHHHHHHh
Confidence 488988874 7777665 799999999999999999 577799999743 2 4456666655 789999999999999
Q ss_pred hCCCCCCCCCCCC
Q 000734 181 VWELLPEVNYDKS 193 (1324)
Q Consensus 181 ~gkllpE~~Y~~~ 193 (1324)
..+++++.+|..+
T Consensus 710 ~~~l~p~~P~~~f 722 (881)
T KOG0966|consen 710 KQRLLPWLPRDLF 722 (881)
T ss_pred hhhccccccHHHH
Confidence 9999998877743
No 60
>TIGR00575 dnlj DNA ligase, NAD-dependent. The member of this family from Treponema pallidum differs in having three rather than just one copy of the BRCT (BRCA1 C Terminus) domain (pfam00533) at the C-terminus. It is included in the seed.
Probab=95.74 E-value=0.019 Score=72.99 Aligned_cols=69 Identities=20% Similarity=0.273 Sum_probs=60.8
Q ss_pred CCCCCCcEEEEec-cCchhHHHHHHHHHhCCCEEEeccCCcceEEEeCCCCCCchHhHhhhcCCCeEecHHH
Q 000734 7 SKPFIGVRFVLFG-FDPINERQVRSKLIDGGGVDVGLYTQSCTHVIVDKIVFDDSVCVAARTDGKTLVTSLW 77 (1324)
Q Consensus 7 S~lF~Gv~F~IsG-fd~~~~keL~klI~~~GGtv~~~fss~VTHLIv~~~~sdt~ky~~A~~~gi~VVT~~W 77 (1324)
...|.|.+|||+| +..-.|.++.++|+.+||++....+..+++||++... +.+...|...|++|++...
T Consensus 582 ~~~l~gk~~v~TG~l~~~~R~~~~~~i~~~G~~v~~sVs~kt~~lv~G~~~--gsKl~kA~~lgi~ii~E~~ 651 (652)
T TIGR00575 582 GSPLAGKTFVLTGTLSQMSRDEAKELLENLGGKVASSVSKKTDYVIAGEKA--GSKLAKAQELGIPIINEEE 651 (652)
T ss_pred CCCccCcEEEEeccCCCCCHHHHHHHHHHcCCEEeCCcCCCccEEEECCCC--ChHHHHHHHcCCcEechhh
Confidence 4579999999999 5556899999999999999999999999999999754 6799999999999988643
No 61
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.
Probab=94.96 E-value=0.0063 Score=49.37 Aligned_cols=34 Identities=35% Similarity=1.077 Sum_probs=20.7
Q ss_pred CceEEecCCCCCCccCCcccccccCCCCCCCCCC-CccCcccc
Q 000734 1271 EVMLICGDESGSVGCGVGMHIDCCDPPLESVPEE-DWFCPTCT 1312 (1324)
Q Consensus 1271 ~~lLlCd~~~~~~~C~~~~H~~Cl~PpL~~vP~g-dW~Cp~C~ 1312 (1324)
+.||.|+ +|....|..|.+ +..+|.+ +|+|..|.
T Consensus 2 n~ll~C~------~C~v~VH~~CYG--v~~~~~~~~W~C~~C~ 36 (36)
T PF13831_consen 2 NPLLFCD------NCNVAVHQSCYG--VSEVPDGDDWLCDRCE 36 (36)
T ss_dssp CEEEE-S------SS--EEEHHHHT---SS--SS-----HHH-
T ss_pred CceEEeC------CCCCcCChhhCC--cccCCCCCcEECCcCC
Confidence 4799999 999999999999 7788877 89999884
No 62
>KOG2481 consensus Protein required for normal rRNA processing [RNA processing and modification]
Probab=94.90 E-value=0.024 Score=68.61 Aligned_cols=79 Identities=22% Similarity=0.296 Sum_probs=60.0
Q ss_pred CCCceEEEEcCCCcccHHHHHHHHHHhCCEecCCc---------cCCCceEEEEccCCchHHHHHHcCCCCeEechhHHH
Q 000734 106 GANSLVMCLTGYQRQDREDIMTLVRLMGSQFSKPL---------VANKVTHLICYKFEGEKYELAKKIKSIKLVNHRWLE 176 (1324)
Q Consensus 106 ~FsG~vI~~SGf~~~er~~L~~LI~alGGk~s~~L---------ls~~~THLI~~~~~g~Ky~~Akkw~gI~IVs~eWL~ 176 (1324)
.|+|++|+++. ..-|+.|.-+|.++||.|+-+- .+..+||=||..+...- ..-+-.-|-|+||.
T Consensus 327 lF~glkFfl~r--eVPresL~fiI~s~GG~V~wd~~~~g~~~~~~d~~ITH~IvDrP~~~~-----~v~gR~YvQPQWvf 399 (570)
T KOG2481|consen 327 LFSGLKFFLNR--EVPRESLEFIIRSFGGKVSWDPLGIGATYDESDERITHQIVDRPGQQT-----SVIGRTYVQPQWVF 399 (570)
T ss_pred Hhhcceeeeec--cCchHHHHHHHHHcCCceecCccCCCCcccccccceeeeeecccCccc-----eeeeeeeecchhhh
Confidence 38899988864 3458889999999999987541 12346999999875211 11133579999999
Q ss_pred HHHHhCCCCCCCCCC
Q 000734 177 DCLRVWELLPEVNYD 191 (1324)
Q Consensus 177 DCI~~gkllpE~~Y~ 191 (1324)
|||.++.++|...|.
T Consensus 400 DsvNar~llpt~~Y~ 414 (570)
T KOG2481|consen 400 DSVNARLLLPTEKYF 414 (570)
T ss_pred hhccchhhccHhhhC
Confidence 999999999999998
No 63
>COG5163 NOP7 Protein required for biogenesis of the 60S ribosomal subunit [Translation, ribosomal structure and biogenesis]
Probab=94.68 E-value=0.036 Score=64.98 Aligned_cols=77 Identities=18% Similarity=0.204 Sum_probs=59.6
Q ss_pred CCceEEEEcCCCcccHHHHHHHHHHhCCEecCCc----------cCCCceEEEEccCC-chHHHHHHcCCCCeEechhHH
Q 000734 107 ANSLVMCLTGYQRQDREDIMTLVRLMGSQFSKPL----------VANKVTHLICYKFE-GEKYELAKKIKSIKLVNHRWL 175 (1324)
Q Consensus 107 FsG~vI~~SGf~~~er~~L~~LI~alGGk~s~~L----------ls~~~THLI~~~~~-g~Ky~~Akkw~gI~IVs~eWL 175 (1324)
|+|++|+++.=. -+..|.-+|.+.||.+...- ++..+||-||..+. ..|| .|..-|.|+||
T Consensus 351 FS~f~FyisreV--p~dsLefiilscGG~V~~~p~~~~i~~~~~vD~~vth~i~drp~~~~kv------egrtYiQPQw~ 422 (591)
T COG5163 351 FSGFKFYISREV--PGDSLEFIILSCGGSVVGSPCEADIHVSEKVDEKVTHQIVDRPVMKNKV------EGRTYIQPQWL 422 (591)
T ss_pred hhceEEEEeccc--cchHHHHHHHHcCCcccCchhhccCCchhhccchhhhhhccchhhhhhh------cceeeechHHH
Confidence 899999887543 35667888999999875431 34578999999874 2222 24568899999
Q ss_pred HHHHHhCCCCCCCCCC
Q 000734 176 EDCLRVWELLPEVNYD 191 (1324)
Q Consensus 176 ~DCI~~gkllpE~~Y~ 191 (1324)
.|||..|.+...+.|.
T Consensus 423 fDsiNkG~l~~~~~Y~ 438 (591)
T COG5163 423 FDSINKGKLACVENYC 438 (591)
T ss_pred Hhhhccccchhhhhcc
Confidence 9999999999999998
No 64
>KOG2093 consensus Translesion DNA polymerase - REV1 deoxycytidyl transferase [Replication, recombination and repair]
Probab=94.39 E-value=0.036 Score=70.49 Aligned_cols=176 Identities=13% Similarity=0.130 Sum_probs=112.7
Q ss_pred CCCCCCCcEEEEeccCchhHHHHHHHHHhCCCEEE-eccCCcceEEEeCCCCCCchHhHhhhcCCCe-EecHHHHHHHHH
Q 000734 6 QSKPFIGVRFVLFGFDPINERQVRSKLIDGGGVDV-GLYTQSCTHVIVDKIVFDDSVCVAARTDGKT-LVTSLWVDHSLD 83 (1324)
Q Consensus 6 ~S~lF~Gv~F~IsGfd~~~~keL~klI~~~GGtv~-~~fss~VTHLIv~~~~sdt~ky~~A~~~gi~-VVT~~WI~dC~~ 83 (1324)
.+..|.|+.||+.|...+..++++..-..+||... .+-.+.++|+|+.... -.......++ ...+.||.+|.+
T Consensus 44 ~~s~fs~is~~~ngs~~e~~nelk~~~~~~t~~~~~~~~rs~T~~ii~~~l~-----a~~vk~~~~~~~~~~e~iie~~~ 118 (1016)
T KOG2093|consen 44 GSSSFSGISISVNGSTDESANELKLQNMFHTGASAASYERSGTENIIAQGLP-----ADLVKGFTIPKHISIEWIIECCE 118 (1016)
T ss_pred CcceeeeeeeccCCccccchHHHhhhhhhcccccccccccccceeeecccch-----HHHhccccchhhhcHHHHHHHHh
Confidence 46789999999999777777888888888999887 4445678899988632 1112223332 568999999999
Q ss_pred cCCCcCccccccc----------ccc----------ccccccCCCceEEEEcCCCcccHHHHH-HHHHHhCCEecCCc-c
Q 000734 84 IGMPVDAASIMYR----------PLK----------DLNGIHGANSLVMCLTGYQRQDREDIM-TLVRLMGSQFSKPL-V 141 (1324)
Q Consensus 84 ~gklLp~~~~l~~----------Pl~----------~~~pLp~FsG~vI~~SGf~~~er~~L~-~LI~alGGk~s~~L-l 141 (1324)
.+..+....+..+ ++. ..-+...|.+++|.+.|+..++..++. -....+++...... .
T Consensus 119 ~~~~~~~~~~~~~t~~~h~q~~~~~~~~~~~~D~q~~~~~~ki~~~n~ikinG~~E~~~~dlepp~gv~~d~~~~~~~~~ 198 (1016)
T KOG2093|consen 119 NGMDVGYYPYQLYTGQSHEQAQLAFPVTSFPKDQQISSQSSKIFKNNVIKINGYNEPESLDLEPPSGVLHDKAEDDSTSA 198 (1016)
T ss_pred ccCccccccceeeccchhcccccCCCcccCCccccccccchhccccceeeecCCCCccccccCCCcccccchhhhhhhhH
Confidence 9988764321110 111 001223588999999999987765554 22112233222211 1
Q ss_pred CCCceEEEEccCCchHHHHHHcCCCCeEechhHHHHHHHhCCCCCCCCCC
Q 000734 142 ANKVTHLICYKFEGEKYELAKKIKSIKLVNHRWLEDCLRVWELLPEVNYD 191 (1324)
Q Consensus 142 s~~~THLI~~~~~g~Ky~~Akkw~gI~IVs~eWL~DCI~~gkllpE~~Y~ 191 (1324)
...++|.+....--.+. +-++..++|+|+.+.+..-.......|.
T Consensus 199 rd~v~~~l~~~~l~n~~-----f~n~~~~sP~~~~~k~~~a~~~~~~~~S 243 (1016)
T KOG2093|consen 199 RDHVDHELAGNLLLNKR-----FVNIENTSPDWIVDKELTAHTGTGQNYS 243 (1016)
T ss_pred HHHHHHHhccccccccc-----cceeeecCchhhhhhhhhhccCCccccc
Confidence 33456666554211111 2367899999999999987777777776
No 65
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]
Probab=93.81 E-value=0.032 Score=72.20 Aligned_cols=46 Identities=28% Similarity=0.657 Sum_probs=41.4
Q ss_pred cccccccCCCCCCCceEEecCCCCCCccCCcccccccCCCCCCCCCCCccCcccc
Q 000734 1258 KITCQACGCSDRGEVMLICGDESGSVGCGVGMHIDCCDPPLESVPEEDWFCPTCT 1312 (1324)
Q Consensus 1258 ~~~C~vC~~~~~~~~lLlCd~~~~~~~C~~~~H~~Cl~PpL~~vP~gdW~Cp~C~ 1312 (1324)
++.|.+|+..+ .++||. .|++.||+.|+.||+.++|...|-|--|.
T Consensus 344 ddhcrf~~d~~---~~lc~E------t~prvvhlEcv~hP~~~~~s~~~e~evc~ 389 (1414)
T KOG1473|consen 344 DDHCRFCHDLG---DLLCCE------TCPRVVHLECVFHPRFAVPSAFWECEVCN 389 (1414)
T ss_pred cccccccCccc---ceeecc------cCCceEEeeecCCccccCCCccchhhhhh
Confidence 34699999876 778888 99999999999999999999999999997
No 66
>COG5275 BRCT domain type II [General function prediction only]
Probab=93.53 E-value=0.19 Score=55.39 Aligned_cols=73 Identities=23% Similarity=0.336 Sum_probs=62.4
Q ss_pred CCCceEEEEcCCCc-ccHHHHHHHHHHhCCEecCCccCCCceEEEEcc-CCchHHHHHHcCCCCeEechhHHHHHHH
Q 000734 106 GANSLVMCLTGYQR-QDREDIMTLVRLMGSQFSKPLVANKVTHLICYK-FEGEKYELAKKIKSIKLVNHRWLEDCLR 180 (1324)
Q Consensus 106 ~FsG~vI~~SGf~~-~er~~L~~LI~alGGk~s~~Lls~~~THLI~~~-~~g~Ky~~Akkw~gI~IVs~eWL~DCI~ 180 (1324)
.+.|++|.|+|... -.|..-..+|..+||.++.. .+.++|.||... +...|++.++.+ +|+++..+=|..-|.
T Consensus 156 cL~G~~fVfTG~l~TlsR~~a~~lvk~yGgrvT~~-pSskTtflvlGdnaGP~K~ekiKql-kIkaidEegf~~LI~ 230 (276)
T COG5275 156 CLKGKVFVFTGDLKTLSRDDAKTLVKVYGGRVTAV-PSSKTTFLVLGDNAGPSKMEKIKQL-KIKAIDEEGFDSLIK 230 (276)
T ss_pred cccccEEEEecccccccchhHHHHHHHhCCeeecc-cccceeEEEecCCCChHHHHHHHHh-CCccccHHHHHHHHh
Confidence 47899999999987 68999999999999999998 688888888875 567899999997 999988777755444
No 67
>KOG1246 consensus DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain [General function prediction only]
Probab=91.84 E-value=0.15 Score=67.59 Aligned_cols=54 Identities=33% Similarity=0.848 Sum_probs=47.0
Q ss_pred cccccccccCCCCCCCceEEecCCCCCCccCCcccccccCCCCCCCCCCCccCcccccCcC
Q 000734 1256 TDKITCQACGCSDRGEVMLICGDESGSVGCGVGMHIDCCDPPLESVPEEDWFCPTCTRSRI 1316 (1324)
Q Consensus 1256 ~~~~~C~vC~~~~~~~~lLlCd~~~~~~~C~~~~H~~Cl~PpL~~vP~gdW~Cp~C~~~~~ 1316 (1324)
.+...|..|.+.... .+++|+ +|...||.+|+.|++..+|.|+|.|+.|.....
T Consensus 153 ~~~~~~~~~~k~~~~-~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (904)
T KOG1246|consen 153 IDYPQCNTCSKGKEE-KLLLCD------SCDDSYHTYCLRPPLTRVPDGDWRCPKCIPTPE 206 (904)
T ss_pred ccchhhhccccCCCc-cceecc------cccCcccccccCCCCCcCCcCcccCCccccccc
Confidence 445569999998877 445999 999999999999999999999999999988853
No 68
>COG5275 BRCT domain type II [General function prediction only]
Probab=89.97 E-value=1 Score=49.85 Aligned_cols=77 Identities=12% Similarity=0.070 Sum_probs=61.3
Q ss_pred CCCCCCCCcEEEEeccCc-hhHHHHHHHHHhCCCEEEeccCCcceEEEeCCCCCCchHhHhhhcCCCeEecHHHHHHHH
Q 000734 5 CQSKPFIGVRFVLFGFDP-INERQVRSKLIDGGGVDVGLYTQSCTHVIVDKIVFDDSVCVAARTDGKTLVTSLWVDHSL 82 (1324)
Q Consensus 5 ~~S~lF~Gv~F~IsGfd~-~~~keL~klI~~~GGtv~~~fss~VTHLIv~~~~sdt~ky~~A~~~gi~VVT~~WI~dC~ 82 (1324)
..+.+|.|++|+|+|..+ ..|..-..+|..+||.+....+..+|+|+.+... ...+...+..++|+++...-+...+
T Consensus 152 g~~~cL~G~~fVfTG~l~TlsR~~a~~lvk~yGgrvT~~pSskTtflvlGdna-GP~K~ekiKqlkIkaidEegf~~LI 229 (276)
T COG5275 152 GERECLKGKVFVFTGDLKTLSRDDAKTLVKVYGGRVTAVPSSKTTFLVLGDNA-GPSKMEKIKQLKIKAIDEEGFDSLI 229 (276)
T ss_pred CCcccccccEEEEecccccccchhHHHHHHHhCCeeecccccceeEEEecCCC-ChHHHHHHHHhCCccccHHHHHHHH
Confidence 456789999999999665 5788889999999999999999999999999765 2345566788888887765555443
No 69
>KOG0323 consensus TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=86.30 E-value=0.38 Score=60.90 Aligned_cols=83 Identities=20% Similarity=0.269 Sum_probs=65.4
Q ss_pred CCCCCCcEEEEeccCch----hHHHHHHHHHhCCCEEEeccCCcceEEEeCCCCCCchHhHhhhcCC-CeEecHHHHHHH
Q 000734 7 SKPFIGVRFVLFGFDPI----NERQVRSKLIDGGGVDVGLYTQSCTHVIVDKIVFDDSVCVAARTDG-KTLVTSLWVDHS 81 (1324)
Q Consensus 7 S~lF~Gv~F~IsGfd~~----~~keL~klI~~~GGtv~~~fss~VTHLIv~~~~sdt~ky~~A~~~g-i~VVT~~WI~dC 81 (1324)
...|.|+.+.++|+-+. ....+..+...+|.....++...+||+|+.+.. +++...|...+ +.||++.||..|
T Consensus 439 ~~v~~~~~~vfSg~~P~~~~~~~s~~~~~~~~~g~vs~~~~~~~~th~i~~~~g--t~k~~~a~~~~~~~Vv~~~wl~~~ 516 (635)
T KOG0323|consen 439 TKVLKGSQIVFSGLHPTGSTDESADILGVAQQLGAVSAPDVSDKTTHLIAANAG--TKKVYKAVVSGSAKVVNAAWLWRS 516 (635)
T ss_pred hHHhhccceeecccccCcCCcchhhhhhhhhcccceecccccchhhhHHhhccC--cceeeccccccceeEechhHHHHH
Confidence 45688999999995544 334566667789999999999999999999876 55655554444 899999999999
Q ss_pred HHcCCCcCcc
Q 000734 82 LDIGMPVDAA 91 (1324)
Q Consensus 82 ~~~gklLp~~ 91 (1324)
+..+..+...
T Consensus 517 ~e~w~~v~ek 526 (635)
T KOG0323|consen 517 LEKWGKVEEK 526 (635)
T ss_pred HHHhcchhcc
Confidence 9998887754
No 70
>KOG2093 consensus Translesion DNA polymerase - REV1 deoxycytidyl transferase [Replication, recombination and repair]
Probab=76.38 E-value=2.3 Score=55.13 Aligned_cols=85 Identities=7% Similarity=0.095 Sum_probs=69.5
Q ss_pred cCCCceEEEEcCCCcccHHHHHHHHHHhCCEecCCccCCCceEEEEccCCchHHHHHHcCCCCeEechhHHHHHHHhCCC
Q 000734 105 HGANSLVMCLTGYQRQDREDIMTLVRLMGSQFSKPLVANKVTHLICYKFEGEKYELAKKIKSIKLVNHRWLEDCLRVWEL 184 (1324)
Q Consensus 105 p~FsG~vI~~SGf~~~er~~L~~LI~alGGk~s~~Lls~~~THLI~~~~~g~Ky~~Akkw~gI~IVs~eWL~DCI~~gkl 184 (1324)
-.|+|+.||..|...+....+...-..+||.+........++|+|+......++.-.. .-...+++|+.+|+..+..
T Consensus 46 s~fs~is~~~ngs~~e~~nelk~~~~~~t~~~~~~~~rs~T~~ii~~~l~a~~vk~~~---~~~~~~~e~iie~~~~~~~ 122 (1016)
T KOG2093|consen 46 SSFSGISISVNGSTDESANELKLQNMFHTGASAASYERSGTENIIAQGLPADLVKGFT---IPKHISIEWIIECCENGMD 122 (1016)
T ss_pred ceeeeeeeccCCccccchHHHhhhhhhcccccccccccccceeeecccchHHHhcccc---chhhhcHHHHHHHHhccCc
Confidence 3489999999999999999999999999999985546788999999876544443332 2256789999999999999
Q ss_pred CCCCCCCC
Q 000734 185 LPEVNYDK 192 (1324)
Q Consensus 185 lpE~~Y~~ 192 (1324)
+...+|..
T Consensus 123 ~~~~~~~~ 130 (1016)
T KOG2093|consen 123 VGYYPYQL 130 (1016)
T ss_pred ccccccee
Confidence 99888875
No 71
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=74.59 E-value=0.9 Score=57.01 Aligned_cols=51 Identities=29% Similarity=0.731 Sum_probs=38.1
Q ss_pred cccccccCCCC--CCCceEEecCCCCCCccCCcccccccCCCCCCC-CCCCccCcccccC
Q 000734 1258 KITCQACGCSD--RGEVMLICGDESGSVGCGVGMHIDCCDPPLESV-PEEDWFCPTCTRS 1314 (1324)
Q Consensus 1258 ~~~C~vC~~~~--~~~~lLlCd~~~~~~~C~~~~H~~Cl~PpL~~v-P~gdW~Cp~C~~~ 1314 (1324)
...|.+|+..+ ....|+.|. .|...||.+|+.--+... -.+-|.||.|+--
T Consensus 18 ~~mc~l~~s~G~~~ag~m~ac~------~c~~~yH~~cvt~~~~~~~l~~gWrC~~crvC 71 (694)
T KOG4443|consen 18 CLMCPLCGSSGKGRAGRLLACS------DCGQKYHPYCVTSWAQHAVLSGGWRCPSCRVC 71 (694)
T ss_pred hhhhhhhccccccccCcchhhh------hhcccCCcchhhHHHhHHHhcCCcccCCceee
Confidence 45688887776 357899999 899999999999554443 2334999999643
No 72
>PRK05601 DNA polymerase III subunit epsilon; Validated
Probab=72.20 E-value=11 Score=45.42 Aligned_cols=74 Identities=12% Similarity=0.164 Sum_probs=64.9
Q ss_pred CCCceEEEEcCCCcccHHHHHHHHHHhCCEecCCccCCCceEEEEccCC--chHHHHHHcCCCCeEechhHHHHHHHh
Q 000734 106 GANSLVMCLTGYQRQDREDIMTLVRLMGSQFSKPLVANKVTHLICYKFE--GEKYELAKKIKSIKLVNHRWLEDCLRV 181 (1324)
Q Consensus 106 ~FsG~vI~~SGf~~~er~~L~~LI~alGGk~s~~Lls~~~THLI~~~~~--g~Ky~~Akkw~gI~IVs~eWL~DCI~~ 181 (1324)
.-+|+.|.|++=...+++.|...+...|=.|+.. +++.+..|||+... .-|...|.+. |||+|+-.=+.+.+..
T Consensus 294 lv~Gm~v~~~~e~~~~~d~li~~~~~agL~y~~~-~~r~tslvv~n~~~~~~gk~~~a~~~-gipl~~d~~fl~~~~~ 369 (377)
T PRK05601 294 LVAGMEVVVAPEITMDPDIIIQAIVRAGLAYSEK-LTRQTSVVVCNQTRDLDGKAMHAQRK-GIPLLSDVAFLAAVER 369 (377)
T ss_pred cccCcEEEEeCCccCCHHHHHHHHHHccchhhhc-cccceeEEEeCCCCCccchhhhhhhc-CCCccCHHHHHHHHHH
Confidence 3689999999999999999999999999999999 68999999998763 4678888875 9999999988888764
No 73
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=69.39 E-value=3.7 Score=48.94 Aligned_cols=48 Identities=31% Similarity=0.555 Sum_probs=34.4
Q ss_pred ccccccCCCCCCCceEEecCCCCCCccCCcccccccCCCCCCCCCCCccCcccccCc
Q 000734 1259 ITCQACGCSDRGEVMLICGDESGSVGCGVGMHIDCCDPPLESVPEEDWFCPTCTRSR 1315 (1324)
Q Consensus 1259 ~~C~vC~~~~~~~~lLlCd~~~~~~~C~~~~H~~Cl~PpL~~vP~gdW~Cp~C~~~~ 1315 (1324)
+.|.+|-..=..++.|--= -|...||..|.+|=|..- .=+||-|...-
T Consensus 230 ~~CaIClEdY~~GdklRiL------PC~H~FH~~CIDpWL~~~---r~~CPvCK~di 277 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRIL------PCSHKFHVNCIDPWLTQT---RTFCPVCKRDI 277 (348)
T ss_pred ceEEEeecccccCCeeeEe------cCCCchhhccchhhHhhc---CccCCCCCCcC
Confidence 6899998875433333334 699999999999887541 22799998764
No 74
>KOG4299 consensus PHD Zn-finger protein [General function prediction only]
Probab=66.36 E-value=4.3 Score=51.11 Aligned_cols=49 Identities=27% Similarity=0.793 Sum_probs=39.2
Q ss_pred cccccccCCCCCCCceEEecCCCCCCccCCcccccccCCCCC-CCCCCCccCcccccCc
Q 000734 1258 KITCQACGCSDRGEVMLICGDESGSVGCGVGMHIDCCDPPLE-SVPEEDWFCPTCTRSR 1315 (1324)
Q Consensus 1258 ~~~C~vC~~~~~~~~lLlCd~~~~~~~C~~~~H~~Cl~PpL~-~vP~gdW~Cp~C~~~~ 1315 (1324)
...|.+|...+ .++.|+ .|+..||..|.++++. ..+.+.|.|..|...+
T Consensus 47 ~ts~~~~~~~g---n~~~~~------~~~~s~h~~~~~~~~sp~~~~~~~~~~~~~~~~ 96 (613)
T KOG4299|consen 47 ATSCGICKSGG---NLLCCD------HCPASFHLECDKPPLSPDLKGSEINCSRCPKGR 96 (613)
T ss_pred hhhcchhhhcC---Cccccc------cCccccchhccCcccCcccccccccccCCCccc
Confidence 44588888866 678888 9999999999999986 2345689999997753
No 75
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=66.07 E-value=3.3 Score=44.63 Aligned_cols=49 Identities=29% Similarity=0.729 Sum_probs=34.9
Q ss_pred cccccCCC---CCCCceEEecCCCCCCccCCcccccccCCCC------CCCCCCC--ccCcccccC
Q 000734 1260 TCQACGCS---DRGEVMLICGDESGSVGCGVGMHIDCCDPPL------ESVPEED--WFCPTCTRS 1314 (1324)
Q Consensus 1260 ~C~vC~~~---~~~~~lLlCd~~~~~~~C~~~~H~~Cl~PpL------~~vP~gd--W~Cp~C~~~ 1314 (1324)
.|.+|+.. ..-+.||+|- ||-.+||-.||+|-. +.|-.++ .-|..|+.-
T Consensus 1 ~C~~C~~~g~~~~kG~Lv~CQ------GCs~sYHk~CLG~Rs~ReHlVTKVg~d~FVLQCr~Cig~ 60 (175)
T PF15446_consen 1 TCDTCGYEGDDRNKGPLVYCQ------GCSSSYHKACLGPRSQREHLVTKVGDDDFVLQCRRCIGI 60 (175)
T ss_pred CcccccCCCCCccCCCeEEcC------ccChHHHhhhcCCccccceeeEEEcCCceEEechhhcCh
Confidence 48889643 3457999999 999999999999873 3344443 346666543
No 76
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=61.77 E-value=0.86 Score=42.25 Aligned_cols=52 Identities=21% Similarity=0.469 Sum_probs=21.8
Q ss_pred ccccccCCCCC---CCceEEecCCCCCCccCCcccccccCCCCCCCCCC-------CccCcccccC
Q 000734 1259 ITCQACGCSDR---GEVMLICGDESGSVGCGVGMHIDCCDPPLESVPEE-------DWFCPTCTRS 1314 (1324)
Q Consensus 1259 ~~C~vC~~~~~---~~~lLlCd~~~~~~~C~~~~H~~Cl~PpL~~vP~g-------dW~Cp~C~~~ 1314 (1324)
..|.+|..... ....+.|++. .|...||+.||---|...+.+ .+-||.|...
T Consensus 3 ~~C~IC~~~~~~~~~~p~~~C~n~----~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~ 64 (70)
T PF11793_consen 3 LECGICYSYRLDDGEIPDVVCPNP----SCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSP 64 (70)
T ss_dssp -S-SSS--SS-TT-----B--S-T----T----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SE
T ss_pred CCCCcCCcEecCCCCcCceEcCCc----ccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCe
Confidence 45899987532 2356889965 999999999997544333322 3569999754
No 77
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=60.35 E-value=5.7 Score=35.47 Aligned_cols=35 Identities=29% Similarity=0.799 Sum_probs=29.9
Q ss_pred cccccccccCCCCC-CCceEEecCCCCCCccCCcccccccCC
Q 000734 1256 TDKITCQACGCSDR-GEVMLICGDESGSVGCGVGMHIDCCDP 1296 (1324)
Q Consensus 1256 ~~~~~C~vC~~~~~-~~~lLlCd~~~~~~~C~~~~H~~Cl~P 1296 (1324)
+....|.+|+..-. +++++.|. .|...||-.|...
T Consensus 3 ~~~~~C~~Cg~~~~~~dDiVvCp------~CgapyHR~C~~~ 38 (54)
T PF14446_consen 3 YEGCKCPVCGKKFKDGDDIVVCP------ECGAPYHRDCWEK 38 (54)
T ss_pred ccCccChhhCCcccCCCCEEECC------CCCCcccHHHHhh
Confidence 45567999999864 78999999 8999999999974
No 78
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=57.55 E-value=7 Score=43.33 Aligned_cols=42 Identities=26% Similarity=0.695 Sum_probs=32.9
Q ss_pred cccccccCCCC-----CCCceEEecCCCCCCccCCcccccccCCCCCCCCCCCccCcccccC
Q 000734 1258 KITCQACGCSD-----RGEVMLICGDESGSVGCGVGMHIDCCDPPLESVPEEDWFCPTCTRS 1314 (1324)
Q Consensus 1258 ~~~C~vC~~~~-----~~~~lLlCd~~~~~~~C~~~~H~~Cl~PpL~~vP~gdW~Cp~C~~~ 1314 (1324)
...|++|+..+ +.+....|. .|...||..|... =.||.|...
T Consensus 152 GfiCe~C~~~~~IfPF~~~~~~~C~------~C~~v~H~~C~~~---------~~CpkC~R~ 198 (202)
T PF13901_consen 152 GFICEICNSDDIIFPFQIDTTVRCP------KCKSVFHKSCFRK---------KSCPKCARR 198 (202)
T ss_pred CCCCccCCCCCCCCCCCCCCeeeCC------cCccccchhhcCC---------CCCCCcHhH
Confidence 45699999875 235788999 8999999999993 149999643
No 79
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=55.47 E-value=5 Score=38.95 Aligned_cols=47 Identities=19% Similarity=0.477 Sum_probs=35.6
Q ss_pred cccccCCCCCCCceEEecCCCCCCccCCcccccccCCCCCCCCCCCccCcccccC
Q 000734 1260 TCQACGCSDRGEVMLICGDESGSVGCGVGMHIDCCDPPLESVPEEDWFCPTCTRS 1314 (1324)
Q Consensus 1260 ~C~vC~~~~~~~~lLlCd~~~~~~~C~~~~H~~Cl~PpL~~vP~gdW~Cp~C~~~ 1314 (1324)
.|..|...++.-.++++. |...||+.|+.--|..- ...=.||-|+..
T Consensus 34 ~Cp~Ck~Pgd~Cplv~g~-------C~H~FH~hCI~kWl~~~-~~~~~CPmCR~~ 80 (85)
T PF12861_consen 34 CCPDCKFPGDDCPLVWGK-------CSHNFHMHCILKWLSTQ-SSKGQCPMCRQP 80 (85)
T ss_pred CCCCccCCCCCCceeecc-------CccHHHHHHHHHHHccc-cCCCCCCCcCCe
Confidence 477888888776777665 99999999998776653 334489999864
No 80
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=55.33 E-value=2.3 Score=54.63 Aligned_cols=50 Identities=18% Similarity=0.283 Sum_probs=43.5
Q ss_pred cccccccccCCCCCCCceEEecCCCCCCccCCcccccccCC-CCCCCCCCCccCcccccC
Q 000734 1256 TDKITCQACGCSDRGEVMLICGDESGSVGCGVGMHIDCCDP-PLESVPEEDWFCPTCTRS 1314 (1324)
Q Consensus 1256 ~~~~~C~vC~~~~~~~~lLlCd~~~~~~~C~~~~H~~Cl~P-pL~~vP~gdW~Cp~C~~~ 1314 (1324)
..+..|..|.... ..|+|+ .|.+.||..|+.| |++..+.|-|-|+.|...
T Consensus 504 ~~d~~~~~~~~~l---~~l~~p------~~lrr~k~d~l~~~P~Kte~i~~~~~~~~Q~~ 554 (696)
T KOG0383|consen 504 FHDISCEEQIKKL---HLLLCP------HMLRRLKLDVLKPMPLKTELIGRVELSPCQKK 554 (696)
T ss_pred cchhhHHHHHHhh---ccccCc------hhhhhhhhhhccCCCccceeEEEEecCHHHHH
Confidence 4456788998865 678899 9999999999999 999999999999999654
No 81
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=53.86 E-value=9 Score=47.07 Aligned_cols=52 Identities=27% Similarity=0.672 Sum_probs=39.9
Q ss_pred ccccccCCC--CCCCceEEecCCCCCCccCCcccccccCCC-CCCCCCC-------CccCcccccCcC
Q 000734 1259 ITCQACGCS--DRGEVMLICGDESGSVGCGVGMHIDCCDPP-LESVPEE-------DWFCPTCTRSRI 1316 (1324)
Q Consensus 1259 ~~C~vC~~~--~~~~~lLlCd~~~~~~~C~~~~H~~Cl~Pp-L~~vP~g-------dW~Cp~C~~~~~ 1316 (1324)
..|-||-.. .+.+.+|.|| .|...-|-.|.+-- -.+||.| -|||.-|+...+
T Consensus 120 ~iCcVClg~rs~da~ei~qCd------~CGi~VHEgCYGv~dn~si~s~~s~~stepWfCeaC~~Gvs 181 (707)
T KOG0957|consen 120 VICCVCLGQRSVDAGEILQCD------KCGINVHEGCYGVLDNVSIPSGSSDCSTEPWFCEACLYGVS 181 (707)
T ss_pred eEEEEeecCccccccceeecc------ccCceecccccccccccccCCCCccCCCCchhhhhHhcCCC
Confidence 479999654 3568999999 89999999999843 2345644 499999987654
No 82
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]
Probab=51.62 E-value=3.3 Score=54.80 Aligned_cols=52 Identities=15% Similarity=0.063 Sum_probs=41.0
Q ss_pred CcccccccccCCCCCCCceEEecCCCCCCccCCcccc-cccCCC--CCCCCCCCccCcccccC
Q 000734 1255 DTDKITCQACGCSDRGEVMLICGDESGSVGCGVGMHI-DCCDPP--LESVPEEDWFCPTCTRS 1314 (1324)
Q Consensus 1255 d~~~~~C~vC~~~~~~~~lLlCd~~~~~~~C~~~~H~-~Cl~Pp--L~~vP~gdW~Cp~C~~~ 1314 (1324)
......|.+|+.. +.+|+|+. .|+.+||+ .||+-. =..+|++-|+|+.|.-.
T Consensus 425 wfi~rrl~Ie~~d---et~l~yys-----T~pqly~ll~cLd~~~~e~~L~d~i~~~~ee~~r 479 (1414)
T KOG1473|consen 425 WFISRRLRIEGMD---ETLLWYYS-----TCPQLYHLLRCLDRTYVEMYLCDGIWERREEIIR 479 (1414)
T ss_pred hceeeeeEEecCC---CcEEEEec-----CcHHHHHHHHHhchHHHHHhhccchhhhHHHHHH
Confidence 4445679999964 48888993 59999999 999933 35689999999999755
No 83
>PRK05601 DNA polymerase III subunit epsilon; Validated
Probab=46.55 E-value=50 Score=40.17 Aligned_cols=76 Identities=12% Similarity=0.113 Sum_probs=63.8
Q ss_pred CCCCCcEEEEeccCchhHHHHHHHHHhCCCEEEeccCCcceEEEeCCCCCCchHhHhhhcCCCeEecHHHHHHHHH
Q 000734 8 KPFIGVRFVLFGFDPINERQVRSKLIDGGGVDVGLYTQSCTHVIVDKIVFDDSVCVAARTDGKTLVTSLWVDHSLD 83 (1324)
Q Consensus 8 ~lF~Gv~F~IsGfd~~~~keL~klI~~~GGtv~~~fss~VTHLIv~~~~sdt~ky~~A~~~gi~VVT~~WI~dC~~ 83 (1324)
.|-+|..|+|++--......|...+...|=.|...++..+.-|||+......-|-..|...|+|+|+..=+.+++.
T Consensus 293 ~lv~Gm~v~~~~e~~~~~d~li~~~~~agL~y~~~~~r~tslvv~n~~~~~~gk~~~a~~~gipl~~d~~fl~~~~ 368 (377)
T PRK05601 293 GLVAGMEVVVAPEITMDPDIIIQAIVRAGLAYSEKLTRQTSVVVCNQTRDLDGKAMHAQRKGIPLLSDVAFLAAVE 368 (377)
T ss_pred ccccCcEEEEeCCccCCHHHHHHHHHHccchhhhccccceeEEEeCCCCCccchhhhhhhcCCCccCHHHHHHHHH
Confidence 4889999999997777888999999999999998888887778887665556677889999999999877777665
No 84
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=42.00 E-value=1.8 Score=36.10 Aligned_cols=42 Identities=29% Similarity=0.547 Sum_probs=28.3
Q ss_pred cccccCCCCC-CCceEEecCCCCCCccCCcccccccCCCCCCCCCCCccCcccc
Q 000734 1260 TCQACGCSDR-GEVMLICGDESGSVGCGVGMHIDCCDPPLESVPEEDWFCPTCT 1312 (1324)
Q Consensus 1260 ~C~vC~~~~~-~~~lLlCd~~~~~~~C~~~~H~~Cl~PpL~~vP~gdW~Cp~C~ 1312 (1324)
.|.+|...-. ++.++ -- .|...||..|+..-|.. ...||.|+
T Consensus 2 ~C~IC~~~~~~~~~~~-~l------~C~H~fh~~Ci~~~~~~----~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVV-KL------PCGHVFHRSCIKEWLKR----NNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEE-EE------TTSEEEEHHHHHHHHHH----SSB-TTTH
T ss_pred CCcCCChhhcCCCeEE-Ec------cCCCeeCHHHHHHHHHh----CCcCCccC
Confidence 4888887753 33444 33 49999999999866544 23888885
No 85
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=41.79 E-value=19 Score=34.82 Aligned_cols=31 Identities=26% Similarity=0.659 Sum_probs=22.8
Q ss_pred cccccccCCCCCCCceEEecCCCCCCccCCcccccccC
Q 000734 1258 KITCQACGCSDRGEVMLICGDESGSVGCGVGMHIDCCD 1295 (1324)
Q Consensus 1258 ~~~C~vC~~~~~~~~lLlCd~~~~~~~C~~~~H~~Cl~ 1295 (1324)
...|.+|++.-........- |+..||..|..
T Consensus 78 ~~~C~vC~k~l~~~~f~~~p-------~~~v~H~~C~~ 108 (109)
T PF10367_consen 78 STKCSVCGKPLGNSVFVVFP-------CGHVVHYSCIK 108 (109)
T ss_pred CCCccCcCCcCCCceEEEeC-------CCeEEeccccc
Confidence 45599999987655444444 66889999975
No 86
>COG5067 DBF4 Protein kinase essential for the initiation of DNA replication [DNA replication, recombination, and repair / Cell division and chromosome partitioning]
Probab=41.39 E-value=15 Score=44.25 Aligned_cols=49 Identities=16% Similarity=0.257 Sum_probs=44.8
Q ss_pred CCCCCcEEEEeccCchhHHHHHHHHHhCCCEEEeccCCcceEEEeCCCC
Q 000734 8 KPFIGVRFVLFGFDPINERQVRSKLIDGGGVDVGLYTQSCTHVIVDKIV 56 (1324)
Q Consensus 8 ~lF~Gv~F~IsGfd~~~~keL~klI~~~GGtv~~~fss~VTHLIv~~~~ 56 (1324)
.+|..+.||.-|.++..++.|++-+.++||.+.+.|+..|||+|.....
T Consensus 121 ~aFp~f~fY~dn~s~~~khRvk~gf~~LGa~v~tfF~~~VThfiTrR~~ 169 (468)
T COG5067 121 CAFPAFKFYKDNKSGKRKHRVKEGFCELGAVVFTFFEEHVTHFITRRFA 169 (468)
T ss_pred cccchhhhhhcCCCHHHHHHHHHHHHHhhhhhheeeccceEEEEEeeec
Confidence 4799999999999999888899999999999999999999999998654
No 87
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=34.49 E-value=15 Score=42.53 Aligned_cols=51 Identities=18% Similarity=0.316 Sum_probs=36.1
Q ss_pred cccccccCCCC------CCCceEEecCCCCCCccCCcccccccCCCCC---CCCCCCccCcccccC
Q 000734 1258 KITCQACGCSD------RGEVMLICGDESGSVGCGVGMHIDCCDPPLE---SVPEEDWFCPTCTRS 1314 (1324)
Q Consensus 1258 ~~~C~vC~~~~------~~~~lLlCd~~~~~~~C~~~~H~~Cl~PpL~---~vP~gdW~Cp~C~~~ 1314 (1324)
...|.+|-... ..+.||.|. .|...||.+|+.-+.. .+-...|-|..|.--
T Consensus 258 ~~~~~~~~~~~~~~~~~r~~S~I~C~------~C~~~~HP~Ci~M~~elv~~~KTY~W~C~~C~lC 317 (381)
T KOG1512|consen 258 RNERKHFWDIQTNIIQSRRNSWIVCK------PCATRPHPYCVAMIPELVGQYKTYFWKCSSCELC 317 (381)
T ss_pred hhhhhhhhcchhhhhhhhhccceeec------ccccCCCCcchhcCHHHHhHHhhcchhhcccHhh
Confidence 34477776542 346899999 9999999999985522 233568999998543
No 88
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=30.80 E-value=14 Score=29.41 Aligned_cols=42 Identities=26% Similarity=0.435 Sum_probs=28.0
Q ss_pred ccccCCCCCCCceEEecCCCCCCccCCcccccccCCCCCCCCCCCccCccccc
Q 000734 1261 CQACGCSDRGEVMLICGDESGSVGCGVGMHIDCCDPPLESVPEEDWFCPTCTR 1313 (1324)
Q Consensus 1261 C~vC~~~~~~~~lLlCd~~~~~~~C~~~~H~~Cl~PpL~~vP~gdW~Cp~C~~ 1313 (1324)
|.+|...- ...+... .|...||..|+...+.. +...||.|+.
T Consensus 2 C~iC~~~~--~~~~~~~------~C~H~~c~~C~~~~~~~---~~~~Cp~C~~ 43 (45)
T cd00162 2 CPICLEEF--REPVVLL------PCGHVFCRSCIDKWLKS---GKNTCPLCRT 43 (45)
T ss_pred CCcCchhh--hCceEec------CCCChhcHHHHHHHHHh---CcCCCCCCCC
Confidence 67777654 1223333 58888999999865443 5678999975
No 89
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=30.04 E-value=15 Score=42.28 Aligned_cols=52 Identities=23% Similarity=0.459 Sum_probs=29.5
Q ss_pred cccccccccCCCCCCCceEEecCCCC------CCccCCcccccccCCCCCCCCCCCccCcccccC
Q 000734 1256 TDKITCQACGCSDRGEVMLICGDESG------SVGCGVGMHIDCCDPPLESVPEEDWFCPTCTRS 1314 (1324)
Q Consensus 1256 ~~~~~C~vC~~~~~~~~lLlCd~~~~------~~~C~~~~H~~Cl~PpL~~vP~gdW~Cp~C~~~ 1314 (1324)
.++..|.+|++.-+-+. | +.| .-.|+..||-+|.+-= =+-.-.-+||.|..+
T Consensus 222 l~d~vCaVCg~~~~~s~----~-eegvienty~LsCnHvFHEfCIrGW--civGKkqtCPYCKek 279 (328)
T KOG1734|consen 222 LSDSVCAVCGQQIDVSV----D-EEGVIENTYKLSCNHVFHEFCIRGW--CIVGKKQTCPYCKEK 279 (328)
T ss_pred CCcchhHhhcchheeec----c-hhhhhhhheeeecccchHHHhhhhh--eeecCCCCCchHHHH
Confidence 44566888887632211 0 000 1168899999998721 111112489999765
No 90
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=28.43 E-value=17 Score=34.01 Aligned_cols=25 Identities=32% Similarity=0.741 Sum_probs=17.8
Q ss_pred ccCCcccccccCCCCCCCCCCCccCcccc
Q 000734 1284 GCGVGMHIDCCDPPLESVPEEDWFCPTCT 1312 (1324)
Q Consensus 1284 ~C~~~~H~~Cl~PpL~~vP~gdW~Cp~C~ 1312 (1324)
.|...||..|+..=|.. ...||-|+
T Consensus 49 ~C~H~FH~~Ci~~Wl~~----~~~CP~CR 73 (73)
T PF12678_consen 49 PCGHIFHFHCISQWLKQ----NNTCPLCR 73 (73)
T ss_dssp TTSEEEEHHHHHHHHTT----SSB-TTSS
T ss_pred ccCCCEEHHHHHHHHhc----CCcCCCCC
Confidence 69999999999744432 23898885
No 91
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=27.46 E-value=37 Score=33.63 Aligned_cols=33 Identities=33% Similarity=0.879 Sum_probs=26.6
Q ss_pred cccccccCCCCCCCceEEecCCCCCCccCCcccccccCC
Q 000734 1258 KITCQACGCSDRGEVMLICGDESGSVGCGVGMHIDCCDP 1296 (1324)
Q Consensus 1258 ~~~C~vC~~~~~~~~lLlCd~~~~~~~C~~~~H~~Cl~P 1296 (1324)
...|.+|+.. .+..+-|... +|...||..|..-
T Consensus 55 ~~~C~iC~~~--~G~~i~C~~~----~C~~~fH~~CA~~ 87 (110)
T PF13832_consen 55 KLKCSICGKS--GGACIKCSHP----GCSTAFHPTCARK 87 (110)
T ss_pred CCcCcCCCCC--CceeEEcCCC----CCCcCCCHHHHHH
Confidence 5679999997 3478889943 6999999999763
No 92
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=26.55 E-value=48 Score=36.13 Aligned_cols=23 Identities=26% Similarity=0.645 Sum_probs=19.6
Q ss_pred CCceEEecCCCCCCccCCcccccccCCCC
Q 000734 1270 GEVMLICGDESGSVGCGVGMHIDCCDPPL 1298 (1324)
Q Consensus 1270 ~~~lLlCd~~~~~~~C~~~~H~~Cl~PpL 1298 (1324)
...|.-|. .|.++||+..|.|+-
T Consensus 121 ~nVLFRC~------~C~RawH~~HLP~~~ 143 (175)
T PF15446_consen 121 DNVLFRCT------SCHRAWHFEHLPPPS 143 (175)
T ss_pred hheEEecC------CccceeehhhCCCCc
Confidence 45788899 999999999998863
No 93
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=25.88 E-value=40 Score=29.72 Aligned_cols=18 Identities=39% Similarity=1.210 Sum_probs=12.8
Q ss_pred CCCCCCCCccCcccccCcC
Q 000734 1298 LESVPEEDWFCPTCTRSRI 1316 (1324)
Q Consensus 1298 L~~vP~gdW~Cp~C~~~~~ 1316 (1324)
...+|+ +|.||.|...+.
T Consensus 28 f~~Lp~-~w~CP~C~a~K~ 45 (50)
T cd00730 28 FEDLPD-DWVCPVCGAGKD 45 (50)
T ss_pred HhHCCC-CCCCCCCCCcHH
Confidence 344555 899999987653
No 94
>KOG1632 consensus Uncharacterized PHD Zn-finger protein [General function prediction only]
Probab=25.15 E-value=35 Score=41.07 Aligned_cols=47 Identities=19% Similarity=0.441 Sum_probs=37.5
Q ss_pred ccCCCCCCC-ceEEecCCCCCCccCCcccccc--cCCCCCCCCC-CCccCcccccCc
Q 000734 1263 ACGCSDRGE-VMLICGDESGSVGCGVGMHIDC--CDPPLESVPE-EDWFCPTCTRSR 1315 (1324)
Q Consensus 1263 vC~~~~~~~-~lLlCd~~~~~~~C~~~~H~~C--l~PpL~~vP~-gdW~Cp~C~~~~ 1315 (1324)
.|....+.+ .|+-|+ .|...||-.| ++.+-.++|. ..|+|..|...+
T Consensus 64 ~~~~~~~p~~~~~~cd------~C~~~~~~ec~~v~~~~~e~p~~~~~~c~~c~~~~ 114 (345)
T KOG1632|consen 64 KCYKPCDPDDLMEQCD------LCEDWYHGECWEVGTAEKEAPKEDPKVCDECKEAQ 114 (345)
T ss_pred hcccccCchhhhhccc------cccccccccccccCchhhcCCccccccccccchhh
Confidence 455555554 789999 9999999999 9988777774 679999997664
No 95
>PHA02929 N1R/p28-like protein; Provisional
Probab=24.10 E-value=25 Score=40.29 Aligned_cols=49 Identities=20% Similarity=0.341 Sum_probs=32.0
Q ss_pred ccccccccCCCCCCCc-----eEEecCCCCCCccCCcccccccCCCCCCCCCCCccCcccccCc
Q 000734 1257 DKITCQACGCSDRGEV-----MLICGDESGSVGCGVGMHIDCCDPPLESVPEEDWFCPTCTRSR 1315 (1324)
Q Consensus 1257 ~~~~C~vC~~~~~~~~-----lLlCd~~~~~~~C~~~~H~~Cl~PpL~~vP~gdW~Cp~C~~~~ 1315 (1324)
.+..|.+|...-.... +..-. .|...||..|+.+-+..- =.||.|+..-
T Consensus 173 ~~~eC~ICle~~~~~~~~~~~~~vl~------~C~H~FC~~CI~~Wl~~~----~tCPlCR~~~ 226 (238)
T PHA02929 173 KDKECAICMEKVYDKEIKNMYFGILS------NCNHVFCIECIDIWKKEK----NTCPVCRTPF 226 (238)
T ss_pred CCCCCccCCcccccCccccccceecC------CCCCcccHHHHHHHHhcC----CCCCCCCCEe
Confidence 3567999988532111 11112 599999999998655432 3799998764
No 96
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=23.23 E-value=22 Score=30.18 Aligned_cols=43 Identities=28% Similarity=0.655 Sum_probs=20.7
Q ss_pred ccccCCCCCCCceEEecCCCCCCccCCcccccccCCCCCCCCCCCccCccc
Q 000734 1261 CQACGCSDRGEVMLICGDESGSVGCGVGMHIDCCDPPLESVPEEDWFCPTC 1311 (1324)
Q Consensus 1261 C~vC~~~~~~~~lLlCd~~~~~~~C~~~~H~~Cl~PpL~~vP~gdW~Cp~C 1311 (1324)
|.+|....-. =+.|.++ .|...+|.+|+.--+...... -||.|
T Consensus 1 C~~C~~iv~~--G~~C~~~----~C~~r~H~~C~~~y~r~~~~~--~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQ--GQRCSNR----DCNVRLHDDCFKKYFRHRSNP--KCPNC 43 (43)
T ss_dssp -TTT-SB-SS--SEE-SS------S--EE-HHHHHHHTTT-SS---B-TTT
T ss_pred CcccchhHee--eccCCCC----ccCchHHHHHHHHHHhcCCCC--CCcCC
Confidence 5666665322 2568754 799999999998665554433 68877
No 97
>KOG3612 consensus PHD Zn-finger protein [General function prediction only]
Probab=22.91 E-value=73 Score=40.18 Aligned_cols=51 Identities=18% Similarity=0.246 Sum_probs=40.5
Q ss_pred CcccccccccCCCCCCCceEEecCCCCCCccCCcccccccCCCCCCCCC--CCccCcccccCc
Q 000734 1255 DTDKITCQACGCSDRGEVMLICGDESGSVGCGVGMHIDCCDPPLESVPE--EDWFCPTCTRSR 1315 (1324)
Q Consensus 1255 d~~~~~C~vC~~~~~~~~lLlCd~~~~~~~C~~~~H~~Cl~PpL~~vP~--gdW~Cp~C~~~~ 1315 (1324)
...+.+|..|+..+ ..|.|+ .|-+.||..|+.|- ..++. --|-||.|..-.
T Consensus 57 ~N~d~~cfechlpg---~vl~c~------vc~Rs~h~~c~sp~-~q~r~~s~p~~~p~p~s~k 109 (588)
T KOG3612|consen 57 SNIDPFCFECHLPG---AVLKCI------VCHRSFHENCQSPD-PQKRNYSVPSDKPQPYSFK 109 (588)
T ss_pred cCCCcccccccCCc---ceeeee------hhhccccccccCcc-hhhccccccccCCcccccC
Confidence 45577899999976 789999 99999999999976 33443 359999997654
No 98
>PF05221 AdoHcyase: S-adenosyl-L-homocysteine hydrolase; InterPro: IPR000043 Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase, 3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. This enzyme is ubiquitous, highly conserved, and may play a key role in the regulation of the intracellular concentration of adenosylhomocysteine. AdoHcyase requires NAD+ as a cofactor and contains a central glycine-rich region which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity, 0006730 one-carbon metabolic process; PDB: 3N58_B 3H9U_C 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 1K0U_F 1B3R_A 1XWF_D ....
Probab=22.60 E-value=1.9e+02 Score=33.83 Aligned_cols=60 Identities=20% Similarity=0.215 Sum_probs=40.1
Q ss_pred CCCCCCCcEEEEecCCCCCCHHHHHHHHHhCCcEEecc-CCCcccccccccceeeccCCCchhhHHHHHHHhcCCceee
Q 000734 1126 GHGAFHGMRIIVYGDCIAPPLDTLKRVVKAGDGNILAT-SPPYTRFLNSGVDFAVVSPGMPRVDLWVQEFLKHEIPCVV 1203 (1324)
Q Consensus 1126 ~~~LF~G~~f~l~~~~v~p~~~~Lk~LIeaGGG~Vv~~-~Pp~~~~t~~~~d~~IVs~~~~~~d~~iq~l~k~GIpC~s 1203 (1324)
..++|.|.+|..+-. +......|...|.++|+.|.-. ..|+. . .|.....|.+.||+||.
T Consensus 37 ~~kPl~G~rIa~cLH-le~kTA~L~~tL~a~GAeV~~~~sNplS-------------T----QDdvaAAL~~~Gi~V~A 97 (268)
T PF05221_consen 37 AEKPLKGARIAGCLH-LEAKTAVLAETLKALGAEVRWTGSNPLS-------------T----QDDVAAALAEEGIPVFA 97 (268)
T ss_dssp TT-TTTTEEEEEES---SHHHHHHHHHHHHTTEEEEEEESSTTT-------------------HHHHHHHHHTTEEEEE
T ss_pred ccCCCCCCEEEEEEe-chHHHHHHHHHHHHcCCeEEEecCCCcc-------------c----chHHHHHhccCCceEEE
Confidence 468999999998744 4466789999999999999743 33321 1 13335556677888876
No 99
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=22.46 E-value=38 Score=26.33 Aligned_cols=29 Identities=31% Similarity=0.831 Sum_probs=12.7
Q ss_pred cccccCCCCCCCceEEecCCCCCCccCCccccccc
Q 000734 1260 TCQACGCSDRGEVMLICGDESGSVGCGVGMHIDCC 1294 (1324)
Q Consensus 1260 ~C~vC~~~~~~~~lLlCd~~~~~~~C~~~~H~~Cl 1294 (1324)
.|.+|+....+.....|. .|+-..|+.|.
T Consensus 2 ~C~~C~~~~~~~~~Y~C~------~Cdf~lH~~Ca 30 (30)
T PF07649_consen 2 RCDACGKPIDGGWFYRCS------ECDFDLHEECA 30 (30)
T ss_dssp --TTTS----S--EEE-T------TT-----HHHH
T ss_pred cCCcCCCcCCCCceEECc------cCCCccChhcC
Confidence 589999988776788898 89999999883
No 100
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=20.66 E-value=86 Score=37.32 Aligned_cols=31 Identities=26% Similarity=0.582 Sum_probs=23.6
Q ss_pred cccccccccCCC----------CCCCceEEecCCCCCCccCCccccc
Q 000734 1256 TDKITCQACGCS----------DRGEVMLICGDESGSVGCGVGMHID 1292 (1324)
Q Consensus 1256 ~~~~~C~vC~~~----------~~~~~lLlCd~~~~~~~C~~~~H~~ 1292 (1324)
.....|.+||.. ..+...|.|. .|...||+.
T Consensus 185 ~~~~~CPvCGs~P~~s~v~~~~~~G~RyL~Cs------lC~teW~~~ 225 (309)
T PRK03564 185 EQRQFCPVCGSMPVSSVVQIGTTQGLRYLHCN------LCESEWHVV 225 (309)
T ss_pred cCCCCCCCCCCcchhheeeccCCCCceEEEcC------CCCCccccc
Confidence 356779999876 2456888899 899888864
No 101
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=20.13 E-value=91 Score=37.08 Aligned_cols=31 Identities=29% Similarity=0.644 Sum_probs=23.7
Q ss_pred cccccccccCCC-----------CCCCceEEecCCCCCCccCCccccc
Q 000734 1256 TDKITCQACGCS-----------DRGEVMLICGDESGSVGCGVGMHID 1292 (1324)
Q Consensus 1256 ~~~~~C~vC~~~-----------~~~~~lLlCd~~~~~~~C~~~~H~~ 1292 (1324)
....+|.+||.. .++...|.|. .|...||+.
T Consensus 182 ~~~~~CPvCGs~P~~s~~~~~~~~~G~RyL~Cs------lC~teW~~~ 223 (305)
T TIGR01562 182 ESRTLCPACGSPPVASMVRQGGKETGLRYLSCS------LCATEWHYV 223 (305)
T ss_pred CCCCcCCCCCChhhhhhhcccCCCCCceEEEcC------CCCCccccc
Confidence 445689999875 1356789999 999999874
No 102
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=20.10 E-value=41 Score=43.20 Aligned_cols=74 Identities=24% Similarity=0.550 Sum_probs=43.0
Q ss_pred hhhhhhhhhhhhhhhccCCCCCCCCcccccccccCCCCCC-----CceEEecCCCCCCccCCcccccccCCC-C--C---
Q 000734 1231 EKSLSNLLSKAEEIVMDLTPPNDYDTDKITCQACGCSDRG-----EVMLICGDESGSVGCGVGMHIDCCDPP-L--E--- 1299 (1324)
Q Consensus 1231 ~~~f~~i~~~~~~i~~~~~~~e~~d~~~~~C~vC~~~~~~-----~~lLlCd~~~~~~~C~~~~H~~Cl~Pp-L--~--- 1299 (1324)
+.+|.++..+.-.|+.++.. |--...|.+|...+++ +-.+.|. -.+|.++||..|..-. | +
T Consensus 94 EVrFgNV~TMEPIiLq~VP~----dRfnKtCYIC~E~GrpnkA~~GACMtCN----Ks~CkqaFHVTCAQ~~GLLCEE~g 165 (900)
T KOG0956|consen 94 EVRFGNVHTMEPIILQDVPH----DRFNKTCYICNEEGRPNKAAKGACMTCN----KSGCKQAFHVTCAQRAGLLCEEEG 165 (900)
T ss_pred ceeecccccccceeeccCch----hhhcceeeeecccCCccccccccceecc----cccchhhhhhhHhhhhccceeccc
Confidence 45666666544333332221 2223458888877644 3456676 3489999999998732 1 0
Q ss_pred CCCCCCccCcccc
Q 000734 1300 SVPEEDWFCPTCT 1312 (1324)
Q Consensus 1300 ~vP~gdW~Cp~C~ 1312 (1324)
.+-+.--||-+|.
T Consensus 166 n~~dNVKYCGYCk 178 (900)
T KOG0956|consen 166 NISDNVKYCGYCK 178 (900)
T ss_pred cccccceechhHH
Confidence 1112247999994
Done!