Query 000734
Match_columns 1324
No_of_seqs 492 out of 2578
Neff 5.0
Searched_HMMs 29240
Date Tue Mar 26 16:15:57 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000734.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_506-510//hhsearch_pdb/000734hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3al2_A DNA topoisomerase 2-bin 1.0 1 1 288.0 12.5 209 1014-1227 8-232 (235)
2 3olc_X DNA topoisomerase 2-bin 1.0 1 1 252.2 20.3 184 6-194 102-286 (298)
3 3sqd_A PAX-interacting protein 1.0 1 1 234.3 13.2 197 1015-1223 16-218 (219)
4 3l41_A BRCT-containing protein 1.0 1 1 227.2 4.6 198 1013-1223 6-213 (220)
5 1l0b_A BRCA1; TANDEM-BRCT, thr 1.0 1 1 224.2 17.4 204 1013-1227 5-216 (229)
6 2etx_A Mediator of DNA damage 1.0 1 1 222.4 14.6 199 1010-1227 7-205 (209)
7 2nte_A BARD-1, BRCA1-associate 1.0 1 1 219.1 13.0 181 1015-1213 2-202 (210)
8 3u3z_A Microcephalin; DNA repa 1.0 1 1 215.1 13.0 173 1014-1214 10-187 (199)
9 1t15_A Breast cancer type 1 su 1.0 1 1 207.9 13.6 192 1014-1216 3-202 (214)
10 1l0b_A BRCA1; TANDEM-BRCT, thr 1.0 1 1 190.1 17.9 186 7-194 2-214 (229)
No 1
>3al2_A DNA topoisomerase 2-binding protein 1; BRCT domain, protein binding, DNA binding protein; HET: DNA MSE; 2.00A {Homo sapiens} PDB: 3al3_A*
Probab=1.00 E-value=1 Score=288.04 Aligned_cols=209 Identities=23% Similarity=0.423 Sum_probs=164.7
Q ss_pred CCEEEEEECCH-HHHHHHHHHHHHHCCEEEECCCCCCCCCCEEECCCCCCCHHHHHHHHCCCEEECHHHHHHHHHCCCCC
Q ss_conf 88399980676-87999999999838889510886578532999099874099999983299263266899975229887
Q 000734 1014 EPIWFILSGHR-LQRKEFQVVIRHLKGRLCRDSHQWSYQATHFIAPEIRRTEKFFAAAASGRWILKTDYLSACSQAGKFL 1092 (1324)
Q Consensus 1014 e~~villSGLs-~ek~~L~k~Ik~LGG~V~~d~~~~s~~~THLI~~~~kRT~K~L~AIA~GkWIVsp~WI~dS~kaGkfL 1092 (1324)
+.++|++||++ +++..+.++|++|||.++.+ ..|+.+||||||+.+.||+|||+|||+|+|||+++||.+|+++|+||
T Consensus 8 ~~~~~~~Sg~~~~~~~~l~~~i~~LGg~~~~~-~~~~~~~THlV~~~~~RT~K~l~aia~G~wIvs~~wl~~s~~~g~~l 86 (235)
T 3al2_A 8 KQYIFQLSSLNPQERIDYCHLIEKLGGLVIEK-QCFDPTCTHIVVGHPLRNEKYLASVAAGKWVLHRSYLEACRTAGHFV 86 (235)
T ss_dssp CCCEEEEESCCHHHHHHHHHHHHHTTCEECCS-SSCCTTCCEEEESSCCCSHHHHHHHHTTCEEECTHHHHHHHHHTSCC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHCCCEEECC-CCCCCCCCEEEECCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCC
T ss_conf 88799982889899999999999839999546-77799976798799988899999998499675399999999749999
Q ss_pred CCCCCCCCCCCC-------CCCCCCCCCCHHHHHHHHHHHC-----CCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCEE
Q ss_conf 898840137998-------9556434331045689898308-----9999995899964899999889999988399499
Q 000734 1093 LEEPYEWHKNGL-------SEDGAINLEAPRKWRLLRERTG-----HGAFHGMRIIVYGDCIAPPLDTLKRVVKAGDGNI 1160 (1324)
Q Consensus 1093 dEe~YEl~d~~~-------~~d~~~~~~aprrwRl~~~~~~-----~~LF~G~~v~i~~~~v~p~~~~Lk~LIeaGGGkV 1160 (1324)
||++|||.++.. +.....+..++++||.++++.+ +++|+||+|+|+... ++.+.|++||++|||+|
T Consensus 87 ~E~~ye~~~~~~~d~~~~~~~~~~~l~~a~~r~R~~l~~~~~~g~~~~lF~g~~v~l~~~~--~~~~~l~~ii~agGg~v 164 (235)
T 3al2_A 87 QEEDYEWGSSSILDVLTGINVQQRRLALAAMRWRKKIQQRQESGIVEGAFSGWKVILHVDQ--SREAGFKRLLQSGGAKV 164 (235)
T ss_dssp CSGGGBTTSHHHHTTCTTSCHHHHHHHHHHHHHHHHHHHHHTTTCCSSTTTTCEEEEECCH--HHHHHHHHHHHHTTCEE
T ss_pred CHHCEEECCCCHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCC--CCHHHHHHHHHCCCCEE
T ss_conf 7031661474010124577735667877799999998752344556778898289995699--83899999997399689
Q ss_pred ECCCCCCC--CCCCCCCCEEECCCCCCHHHHHHHHHHHCCCCEEEECCEEEEEEECCC-CCCCCCCCCCC
Q ss_conf 41699953--444666550001699960458899998429754331202124630486-31211124541
Q 000734 1161 LATSPPYT--RFLNSGVDFAVVSPGMPRVDLWVQEFLKHEIPCVVADYLVEFVCKPGY-SLERHVQYNTH 1227 (1324)
Q Consensus 1161 v~~~Pp~~--~~t~~~vd~~IIs~~~~~~d~~~~~L~k~GIpCvs~EyIldyvckpgc-~Lerhvl~NTc 1227 (1324)
+...||+. ..++.+++...+.++.... +++.+.+.|++|++.|||++|++.+.. .++..++-...
T Consensus 165 l~~~~~~~~~~~t~~~vd~~~~~~~~~~~--~~~~~~~~~i~~v~~ewlld~i~~~~~~~~~~y~l~~~~ 232 (235)
T 3al2_A 165 LPGHSVPLFKEATHLFSDLNKLKPDDSGV--NIAEAAAQNVYCLRTEYIADYLMQESPPHVENYCLPEAI 232 (235)
T ss_dssp CSSCCGGGGGGCSEEEECC--------CC--CHHHHHHTTCEEEETHHHHHHHHCSSCCCHHHHBCGGGG
T ss_pred ECCCCCCCCCCCCEEEEECCCCCCCCHHH--HHHHHHHCCCCEECHHHHHHHHHCCCCCCHHHEECCCCC
T ss_conf 66889875566834787624689642267--899998769969839999999966899983305766542
No 2
>3olc_X DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, RAD9, DNA binding protein; HET: DNA; 2.40A {Homo sapiens} PDB: 2xnk_A* 2xnh_A*
Probab=1.00 E-value=1 Score=252.22 Aligned_cols=184 Identities=19% Similarity=0.229 Sum_probs=165.9
Q ss_pred CCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEECCCCCCEEEEECCCCCCCHHHHHHHCCCCEEECHHHHHHHHHCC
Q ss_conf 99998883999941593209999999991998998066996129995997778537686530998384199999999829
Q 000734 6 QSKPFIGVRFVLFGFDPINERQVRSKLIDGGGVDVGLYTQSCTHVIVDKIVFDDSVCVAARTDGKTLVTSLWVDHSLDIG 85 (1324)
Q Consensus 6 ss~iF~Gv~F~IsGfd~~e~kqLr~lIk~~GGtv~s~fss~VTHLIvd~~~~dt~ky~~A~~~g~~IVTp~WI~dCi~~g 85 (1324)
.+.+|.|++||++|+.+..+.+|.++|..+||++..+++.++||||+.... +.+|..|...+++||++.||.+||..+
T Consensus 102 y~~~l~g~~~~~tG~~~~~r~~l~~~i~~~GG~v~~~~t~~tTHLI~~~~~--t~Ky~~A~~~gi~IV~~~Wl~~c~~~~ 179 (298)
T 3olc_X 102 YNMVMSDVTISCTSLEKEKREEVHKYVQMMGGRVYRDLNVSVTHLIAGEVG--SKKYLVAANLKKPILLPSWIKTLWEKS 179 (298)
T ss_dssp CCCTTTTCEEEEESCCHHHHHHHHHHHHHTTCEECSSCCTTCCEEEESSSC--SHHHHHHHHTTCCEECHHHHHHHHHHH
T ss_pred CCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCEEECCCCCCEEEEEEECCC--CHHHHHHHHCCCEEEEHHHHHHHHHCC
T ss_conf 001148809996798277699999999988999906768971699982799--848999987798096199999999748
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCEECCCCCC-CCCEEEEECCCCCHHHHHHHCC
Q ss_conf 986732011255644456668786089974888112999999999809986077647-9711999722773578999817
Q 000734 86 MPVDAASIMYRPLKDLNGIHGANSLVMCLTGYQRQDREDIMTLVRLMGSQFSKPLVA-NKVTHLICYKFEGEKYELAKKI 164 (1324)
Q Consensus 86 klLd~~~~l~~Pl~~~~~Lp~F~GlvIslSGf~~~er~~L~~lI~~lGGkvst~Lis-~~vTHLVv~~~~g~Ky~~Akk~ 164 (1324)
+.++...+...++ ..++.++|.|++||++|+...++..|..+|+.+||+|+.. ++ ++|||||+....+.||.+|++|
T Consensus 180 ~~~~~~~~~~~~~-~~~~~~~f~g~~i~~tG~~~~~r~~l~~li~~~GG~~~~~-ls~~~~THLI~~~~~g~K~~~A~~~ 257 (298)
T 3olc_X 180 QEKKITRYTDINM-EDFKCPIFLGCIICVTGLCGLDRKEVQQLTVKHGGQYMGQ-LKMNECTHLIVQEPKGQKYECAKRW 257 (298)
T ss_dssp HTTCCSSGGGSCG-GGGBCCTTTTCEEEECSCCHHHHHHHHHHHHHTTCEECSS-CCTTTCCEEECSSSCSHHHHHHHHT
T ss_pred CCCCCCCCCCCCC-CCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCEEECE-ECCCCCEEEEEECCCCHHHHHHHHC
T ss_conf 8677322354563-3246653488179993887832999999999859999450-0588855999807986699999978
Q ss_pred CCCEEECHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 997276656899999938789987778889
Q 000734 165 KSIKLVNHRWLEDCLRVWELLPEVNYDKSG 194 (1324)
Q Consensus 165 p~IkIVs~eWL~DCI~~~klLdE~~Y~~~g 194 (1324)
+|+||+++||+||++++.++||++|.+..
T Consensus 258 -gi~IV~~~Wl~dsi~~g~~lde~~Y~l~~ 286 (298)
T 3olc_X 258 -NVHCVTTQWFFDSIEKGFCQDESIYKTEP 286 (298)
T ss_dssp -TCEEECHHHHHHHHHHTSCCCGGGSBSCC
T ss_pred -CCEEEEHHHHHHHHHCCCCCCCHHCCCCC
T ss_conf -99198299999999779988913167899
No 3
>3sqd_A PAX-interacting protein 1; tandem BRCT domains, cell cycle; HET: SEP; 2.15A {Homo sapiens}
Probab=1.00 E-value=1 Score=234.29 Aligned_cols=197 Identities=20% Similarity=0.323 Sum_probs=155.3
Q ss_pred CEEEEEECCH-HHHHHHHHHHHHHCCEEEECCCCCCCCCCEEECCCCCCCHHHHHHHHCCCEEECHHHHHHHHHCCCCCC
Q ss_conf 8399980676-879999999998388895108865785329990998740999999832992632668999752298878
Q 000734 1015 PIWFILSGHR-LQRKEFQVVIRHLKGRLCRDSHQWSYQATHFIAPEIRRTEKFFAAAASGRWILKTDYLSACSQAGKFLL 1093 (1324)
Q Consensus 1015 ~~villSGLs-~ek~~L~k~Ik~LGG~V~~d~~~~s~~~THLI~~~~kRT~K~L~AIA~GkWIVsp~WI~dS~kaGkfLd 1093 (1324)
.++|+|||+. .++..+.++|++|||.++.+ + ..|||||++.+.||+|||+|++.|+|||+++||.+|+++|+|+|
T Consensus 16 ~~~i~~SG~~~~~~~~l~~~i~~lGg~v~~~---~-~~~THLI~~~~~rT~K~l~A~~~g~~IVs~~Wl~~c~~~~~~l~ 91 (219)
T 3sqd_A 16 TPFVLFTGFEPVQVQQYIKKLYILGGEVAES---A-QKCTHLIASKVTRTVKFLTAISVVKHIVTPEWLEECFRCQKFID 91 (219)
T ss_dssp CCEEEECSCCHHHHHHHHHHHHHTTCEECSS---G-GGCSEEECSSCCCCHHHHHHTTTCSEEECHHHHHHHHHHTSCCC
T ss_pred CEEEEEECCCHHHHHHHHHHHHHCCCEEECC---C-CCCEEEEECCCCCCHHHHHHHHCCCCEECHHHHHHHHHCCCCCC
T ss_conf 7499990898277999999999879999689---9-99669998999998999999875998805999999998399798
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCEEECCCCCCCCCCC-
Q ss_conf 9884013799895564343310456898983089999995899964899999889999988399499416999534446-
Q 000734 1094 EEPYEWHKNGLSEDGAINLEAPRKWRLLRERTGHGAFHGMRIIVYGDCIAPPLDTLKRVVKAGDGNILATSPPYTRFLN- 1172 (1324)
Q Consensus 1094 Ee~YEl~d~~~~~d~~~~~~aprrwRl~~~~~~~~LF~G~~v~i~~~~v~p~~~~Lk~LIeaGGGkVv~~~Pp~~~~t~- 1172 (1324)
|++|+|.++..+....+.+ ...+.+.+ ..+||.|+.|||++ .+.|+++.|++||+++||+|+...|++.....
T Consensus 92 e~~y~l~d~~~e~~~~~~l----~~~l~ra~-~~~LF~G~~f~it~-~~~~~~~~l~~lI~~~GG~v~~~~p~~~~~~~~ 165 (219)
T 3sqd_A 92 EQNYILRDAEAEVLFSFSL----EESLKRAH-VSPLFKAKYFYITP-GICPSLSTMKAIVECAGGKVLSKQPSFRKLMEH 165 (219)
T ss_dssp SGGGBCCCHHHHHHTTCCH----HHHHHHHH-HSCTTTTEEEEECT-TCSSCHHHHHHHHHHTTCEEESSCCCHHHHHHH
T ss_pred HHHCCCCCCHHHHHCCCCH----HHHHHHHC-CCCCCCCCEEEEEC-CCCCCHHHHHHHHHHCCCEEECCCCCHHHHHHH
T ss_conf 5764077800344439986----78764000-25555896899938-989999999999997999997778966776654
Q ss_pred ----CCCCEEECCCCCCHHHHHHHHHHHCCCCEEEECCEEEEEEECCCCCCCCCC
Q ss_conf ----665500016999604588999984297543312021246304863121112
Q 000734 1173 ----SGVDFAVVSPGMPRVDLWVQEFLKHEIPCVVADYLVEFVCKPGYSLERHVQ 1223 (1324)
Q Consensus 1173 ----~~vd~~IIs~~~~~~d~~~~~L~k~GIpCvs~EyIldyvckpgc~Lerhvl 1223 (1324)
...+++||++. .+..+++.+.+.|++||+.|||+++|......+|++.+
T Consensus 166 ~~~~~~~~~ivis~~--~d~~~~~~~~~~~~~v~s~E~il~~Il~q~ld~~~~~~ 218 (219)
T 3sqd_A 166 KQNSSLSEIILISCE--NDLHLCREYFARGIDVHNAEFVLTGVLTQTLDYESYKF 218 (219)
T ss_dssp HHCTTSCEEEEEECG--GGGGGGHHHHHTTCCCEETHHHHHHHHHTCCCTTTSBC
T ss_pred HCCCCCCCEEEEECC--CHHHHHHHHHHCCCCEEEHHHHHHHHHHEEECCHHCCC
T ss_conf 203678988999662--07999999997799498089999888711645111146
No 4
>3l41_A BRCT-containing protein 1; BRC1, BRCT domain, tandem BRCT repeat, phosphoserine binding domain, DNA repair, cell division, mitosis; HET: SEP; 1.45A {Schizosaccharomyces pombe} PDB: 3l40_A*
Probab=1.00 E-value=1 Score=227.16 Aligned_cols=198 Identities=18% Similarity=0.321 Sum_probs=145.3
Q ss_pred CCCEEEEEECCHHHHHHHHHHHHHHCCEEEECCCCCCCCCCEEECCCCCCCHHHHHHHHCCCEEECHHHHHHHHHCCCCC
Q ss_conf 98839998067687999999999838889510886578532999099874099999983299263266899975229887
Q 000734 1013 DEPIWFILSGHRLQRKEFQVVIRHLKGRLCRDSHQWSYQATHFIAPEIRRTEKFFAAAASGRWILKTDYLSACSQAGKFL 1092 (1324)
Q Consensus 1013 ~e~~villSGLs~ek~~L~k~Ik~LGG~V~~d~~~~s~~~THLI~~~~kRT~K~L~AIA~GkWIVsp~WI~dS~kaGkfL 1092 (1324)
...++|+|||+.+.. +.++|++|||.++.+ + .+|||||++.+.||+|||+|||.|+|||+++||.+|+++|+|+
T Consensus 6 ~~~~~v~fSG~~~~~--~~~~i~~lGg~v~~~---~-~~~THlV~~~~~RT~K~l~Aia~g~~IVs~~Wl~~~~~~~~~l 79 (220)
T 3l41_A 6 SKRVYITFTGYDKKP--SIDNLKKLDMSITSN---P-SKCTHLIAPRILRTSKFLCSIPYGPCVVTMDWINSCLKTHEIV 79 (220)
T ss_dssp -CCEEEEECSCSSCC--CCGGGGGGTEEECSC---T-TTCSEEECSSCCCBHHHHHHGGGCCEEECHHHHHHHHHHTSCC
T ss_pred CCEEEEEEECCCCCC--CCCHHHHCCEEECCC---C-HHHHHHHHHHHHHHCCEEECCCCCCEEEEHHHHHHHHHHHHCC
T ss_conf 626999976467888--733076516010169---3-1201002156764202045477887688758988665464323
Q ss_pred CCCCCCCCCCCCCCCCCCCC-CCHHHHHHHHHHHCCCCCCCCEEEEECCCC-CCCHHHHHHHHHHCCCEEECCCCCCCCC
Q ss_conf 89884013799895564343-310456898983089999995899964899-9998899999883994994169995344
Q 000734 1093 LEEPYEWHKNGLSEDGAINL-EAPRKWRLLRERTGHGAFHGMRIIVYGDCI-APPLDTLKRVVKAGDGNILATSPPYTRF 1170 (1324)
Q Consensus 1093 dEe~YEl~d~~~~~d~~~~~-~aprrwRl~~~~~~~~LF~G~~v~i~~~~v-~p~~~~Lk~LIeaGGGkVv~~~Pp~~~~ 1170 (1324)
||++|+|.++..+....+.+ .+..++|. ...+||.|+.|||+.... .|+.+.|++||++|||+|+. .|++...
T Consensus 80 ~e~~y~l~d~~~e~~~~~~l~~~~~rar~----~~~~LF~G~~f~it~~~~~~p~~~~l~~iI~~~GG~v~~-~p~~~~~ 154 (220)
T 3l41_A 80 DEEPYLLNDPEKELELGCTLESALKRARA----QGPSLLEDYVVYLTSKTVAPENVPAVISIVKSNGGVCST-LNVYNKR 154 (220)
T ss_dssp CSGGGBCCCHHHHHHHTSCHHHHHHHHHH----HCSCTTTTSEEEEETTSSCGGGHHHHHHHHHHTTCEEEE-ECSCCHH
T ss_pred CCCCCCCCCCHHHHHCCCCHHHHHHHHHH----CCCHHHHHEEEEEECCCCCCCCCCEEEEEEECCCCEECH-HHHHHHH
T ss_conf 66852158807876305528999998872----194065442577851333777775378999348957421-3577789
Q ss_pred C--CC-CCCEEECCCCCCHHHHHHHHHHH-----CCCCEEEECCEEEEEEECCCCCCCCCC
Q ss_conf 4--66-65500016999604588999984-----297543312021246304863121112
Q 000734 1171 L--NS-GVDFAVVSPGMPRVDLWVQEFLK-----HEIPCVVADYLVEFVCKPGYSLERHVQ 1223 (1324)
Q Consensus 1171 t--~~-~vd~~IIs~~~~~~d~~~~~L~k-----~GIpCvs~EyIldyvckpgc~Lerhvl 1223 (1324)
. .. ..++.+|++. .....| ..|.+ .++.+|+.|||++.++++...++.|+.
T Consensus 155 ~~~~~~~~~~~vis~~-~d~~~~-~~f~~~~~~~~~~~i~~~e~ll~~il~q~l~~~~~~~ 213 (220)
T 3l41_A 155 LARHLEDGNVVLITCN-EDSHIW-TNFLDNASQNKTIFLQNYDWLIKTVLRQEIDVNDRIA 213 (220)
T ss_dssp HHHHHHHCCEEEEECG-GGHHHH-TTTHHHHTTCTTEEEEEHHHHHHHHHHTCCCTTCCBC
T ss_pred HHHHCCCCCEEEEEEC-CCCHHH-HHHHCCCCCCCEEEEECHHHHHHHHHHHHCCCCHHHH
T ss_conf 9874046978999937-851577-7764140216458872220999999998727315777
No 5
>1l0b_A BRCA1; TANDEM-BRCT, three-helix bundle, unknown function; 2.30A {Rattus norvegicus} SCOP: c.15.1.3 c.15.1.3
Probab=1.00 E-value=1 Score=224.19 Aligned_cols=204 Identities=20% Similarity=0.250 Sum_probs=156.8
Q ss_pred CCCEEEEEECCH-HHHHHHHHHHHHHCCEEEECCCCCCCCCCEEECCCC-----CCCHHHHHHHHCCCEEECHHHHHHHH
Q ss_conf 988399980676-879999999998388895108865785329990998-----74099999983299263266899975
Q 000734 1013 DEPIWFILSGHR-LQRKEFQVVIRHLKGRLCRDSHQWSYQATHFIAPEI-----RRTEKFFAAAASGRWILKTDYLSACS 1086 (1324)
Q Consensus 1013 ~e~~villSGLs-~ek~~L~k~Ik~LGG~V~~d~~~~s~~~THLI~~~~-----kRT~K~L~AIA~GkWIVsp~WI~dS~ 1086 (1324)
...++|++||++ .++..+.++++++||.+. .+|+..|||||+... .||+||++||+.|+|||+++||.+|+
T Consensus 5 ~~~~~i~~sg~~~~~~~~l~~~~~~~G~~~~---~~~~~~~THlI~~~~~~~~~~rt~K~~~a~~~g~~IV~~~Wl~~~~ 81 (229)
T 1l0b_A 5 ERDISMVVSGLTPKEVMIVQKFAEKYRLALT---DVITEETTHVIIKTDAEFVCERTLKYFLGIAGGKWIVSYSWVIKSI 81 (229)
T ss_dssp CCCCEEEEESCCHHHHHHHHHHHHHTTCEEC---SSCCSSCCEEEECBCTTSEECCCHHHHHHHHTTCEEEETHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHCCCEEE---CCCCCCCCEEEECCCCCCCCCCCHHHHHHHHCCCCEECHHHHHHHH
T ss_conf 7875999858998999999999998099995---8769998789973786544356599999998899096699999999
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCEEECCCCC
Q ss_conf 22988789884013799895564343310456898983089999995899964899999889999988399499416999
Q 000734 1087 QAGKFLLEEPYEWHKNGLSEDGAINLEAPRKWRLLRERTGHGAFHGMRIIVYGDCIAPPLDTLKRVVKAGDGNILATSPP 1166 (1324)
Q Consensus 1087 kaGkfLdEe~YEl~d~~~~~d~~~~~~aprrwRl~~~~~~~~LF~G~~v~i~~~~v~p~~~~Lk~LIeaGGGkVv~~~Pp 1166 (1324)
++|+|+||++|+|.++.... ....+|+++|+. ..++|.|+.|||++++..++++.|.+||+++||+++...+.
T Consensus 82 ~~~~~~~e~~y~~~~~~~~~---~~~~~~~~~r~~----~~~lF~g~~~~~~~~~~~~~~~~l~~li~~~GG~v~~~~~~ 154 (229)
T 1l0b_A 82 QERKLLSVHEFEVKGDVVTG---SNHQGPRRSRES----QEKLFEGLQIYCCEPFTNMPKDELERMLQLCGASVVKELPL 154 (229)
T ss_dssp TTTSCCCSGGGBCCEETTTC---SSSCHHHHHHHH----C--CCTTCEEEECSCCSSSCHHHHHHHHHHTTCEEECSSSC
T ss_pred HCCCCCCHHHEEECCCCCCC---CCCCCCHHHHHH----HHHHHCCCEEEEEECCCCCCHHHHHHHHHHCCCEEECCCCC
T ss_conf 87882781775752541455---334650665542----46664696699972578989999999999789989688134
Q ss_pred CCCCCCCCCCEEECCCCCCHHHHHHHHH-HHCCCCEEEECCEEEEEEECCCC-CCCCCCCCCC
Q ss_conf 5344466655000169996045889999-84297543312021246304863-1211124541
Q 000734 1167 YTRFLNSGVDFAVVSPGMPRVDLWVQEF-LKHEIPCVVADYLVEFVCKPGYS-LERHVQYNTH 1227 (1324)
Q Consensus 1167 ~~~~t~~~vd~~IIs~~~~~~d~~~~~L-~k~GIpCvs~EyIldyvckpgc~-Lerhvl~NTc 1227 (1324)
...... ...++++.+.....+..++.+ ...+++|++++||++++.....+ .+.+.+.+..
T Consensus 155 ~~~~~~-~~~~vvv~~~~~~~~~~~~~l~~~~~i~iVs~~WlldsI~~~~~~~~~~Y~l~~~~ 216 (229)
T 1l0b_A 155 LTRDTG-AHPIVLVQPSAWTEDNDCPDIGQLCKGRLVMWDWVLDSISVYRCRDLDAYLVQNIT 216 (229)
T ss_dssp GGGCCS-SCCEEEEC-------------------CEEETHHHHHHHHTTSCCCGGGGBCC---
T ss_pred CCCCCC-CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEHHHHHHHHHCCCCCCCCCEECCCCC
T ss_conf 665579-85399980884100225999998759908602389998863886896364734666
No 6
>2etx_A Mediator of DNA damage checkpoint protein 1; tandem BRCT domains histone gamma-H2AX, cell cycle; 1.33A {Homo sapiens} PDB: 2azm_A* 3k05_A* 2ado_A
Probab=1.00 E-value=1 Score=222.40 Aligned_cols=199 Identities=22% Similarity=0.256 Sum_probs=149.5
Q ss_pred CCCCCCEEEEEECCHHHHHHHHHHHHHHCCEEEECCCCCCCCCCEEECCCCCCCHHHHHHHHCCCEEECHHHHHHHHHCC
Q ss_conf 45698839998067687999999999838889510886578532999099874099999983299263266899975229
Q 000734 1010 KLKDEPIWFILSGHRLQRKEFQVVIRHLKGRLCRDSHQWSYQATHFIAPEIRRTEKFFAAAASGRWILKTDYLSACSQAG 1089 (1324)
Q Consensus 1010 ~~k~e~~villSGLs~ek~~L~k~Ik~LGG~V~~d~~~~s~~~THLI~~~~kRT~K~L~AIA~GkWIVsp~WI~dS~kaG 1089 (1324)
+.....++|+|||+.+.. +.++|+.|||.++.+ ++ +|||||++.+.||+|||+|++.|+|||+++||.+|++++
T Consensus 7 ~~~~~~~~v~~sG~~~~~--~~~~i~~lGg~~~~~---~~-~~THlI~~~~~rt~K~l~a~~~g~~IV~~~Wl~~~~~~~ 80 (209)
T 2etx_A 7 NQESTAPKVLFTGVVDAR--GERAVLALGGSLAGS---AA-EASHLVTDRIRRTVKFLCALGRGIPILSLDWLHQSRKAG 80 (209)
T ss_dssp -----CCEEEECSSCCHH--HHHHHHHTTCEECSS---TT-TCSEEECSSCCCSHHHHHHHHHTCCEECTHHHHHHHHHT
T ss_pred CCCCCCCEEEEECCCCHH--HHHHHHHCCCEEECC---CC-CCEEEEECCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCC
T ss_conf 545787289994898689--999999879999688---88-864999899889899999996599566699999999849
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCEEECCCCCCCC
Q ss_conf 88789884013799895564343310456898983089999995899964899999889999988399499416999534
Q 000734 1090 KFLLEEPYEWHKNGLSEDGAINLEAPRKWRLLRERTGHGAFHGMRIIVYGDCIAPPLDTLKRVVKAGDGNILATSPPYTR 1169 (1324)
Q Consensus 1090 kfLdEe~YEl~d~~~~~d~~~~~~aprrwRl~~~~~~~~LF~G~~v~i~~~~v~p~~~~Lk~LIeaGGGkVv~~~Pp~~~ 1169 (1324)
+|+||++|+|.++.......+.+ +-.+.+.+. .+||.|+.||++ +++.++.+.|.+||+++||+|+...++..
T Consensus 81 ~~l~e~~y~~~~~~~~~~~~~~l----~~~~~~a~~-~~lF~g~~~~~~-~~~~~~~~~l~~li~~~GG~v~~~~~~~~- 153 (209)
T 2etx_A 81 FFLPPDEYVVTDPEQEKNFGFSL----QDALSRARE-RRLLEGYEIYVT-PGVQPPPPQMGEIISCCGGTYLPSMPRSY- 153 (209)
T ss_dssp SCCCSGGGBCCCHHHHHHTTCCH----HHHHHHHHH-SCTTTTCEEEEC-TTCSSCHHHHHHHHHHTTCEECSSCCCSC-
T ss_pred CCCCHHHCCCCCHHHHHHCCCCH----HHHHHHHHH-CCCCCCCEEEEE-CCCCCCHHHHHHHHHHCCCEEECCCCCCC-
T ss_conf 97883422454836665509987----898764552-777689389992-79889999999999978999978788877-
Q ss_pred CCCCCCCEEECCCCCCHHHHHHHHHHHCCCCEEEECCEEEEEEECCCCCCCCCCCCCC
Q ss_conf 4466655000169996045889999842975433120212463048631211124541
Q 000734 1170 FLNSGVDFAVVSPGMPRVDLWVQEFLKHEIPCVVADYLVEFVCKPGYSLERHVQYNTH 1227 (1324)
Q Consensus 1170 ~t~~~vd~~IIs~~~~~~d~~~~~L~k~GIpCvs~EyIldyvckpgc~Lerhvl~NTc 1227 (1324)
..+.++|+... +...++.+.+.+++|++.+||+++|.+....++.+++.+..
T Consensus 154 ----~~~~ivI~~~~--d~~~~~~~~~~~i~vvs~eWi~~sI~~q~ld~e~y~l~~~~ 205 (209)
T 2etx_A 154 ----KPQRVVITCPQ--DFPHCSIPLRVGLPLLSPEFLLTGVLKQEAKPEAFVLSPLE 205 (209)
T ss_dssp ----CTTEEEECCGG--GGGGCHHHHHHTCCEECTHHHHHHHHHTCCCGGGGBCCTTC
T ss_pred ----CCCEEEEECCC--CHHHHHHHHHCCCEEECHHHHHHHHHHCCCCHHHHEECCCC
T ss_conf ----88518998763--27999999978995986999999998466685894305777
No 7
>2nte_A BARD-1, BRCA1-associated ring domain protein 1; BRCT, ring finger, zinc-binding protein, ubiquitin LI antitumor protein; 1.90A {Homo sapiens} PDB: 3fa2_A 2r1z_A
Probab=1.00 E-value=1 Score=219.06 Aligned_cols=181 Identities=24% Similarity=0.368 Sum_probs=142.6
Q ss_pred CEEEEEECCH-HHHHHHHHHHHHHCCEEEECCCCCCCCCCEEECCC--CCCCHHHHHHHHCCCEEECHHHHHHHHHCCCC
Q ss_conf 8399980676-87999999999838889510886578532999099--87409999998329926326689997522988
Q 000734 1015 PIWFILSGHR-LQRKEFQVVIRHLKGRLCRDSHQWSYQATHFIAPE--IRRTEKFFAAAASGRWILKTDYLSACSQAGKF 1091 (1324)
Q Consensus 1015 ~~villSGLs-~ek~~L~k~Ik~LGG~V~~d~~~~s~~~THLI~~~--~kRT~K~L~AIA~GkWIVsp~WI~dS~kaGkf 1091 (1324)
.++|++||+. .++..+.+++++|||.++. +|++.|||||+.. ..||+|||+|++.|+|||+++||.+|+++|+|
T Consensus 2 ~~vi~~sg~~~~~~~~l~~~~~~~G~~~~~---~~~~~~THlV~~~~~~~rt~K~l~a~~~g~~IV~~~Wl~~c~~~~~~ 78 (210)
T 2nte_A 2 PLVLIGSGLSSEQQKMLSELAVILKAKKYT---EFDSTVTHVVVPGDAVQSTLKCMLGILNGCWILKFEWVKACLRRKVC 78 (210)
T ss_dssp CCEEEESSCCHHHHHHHHHHHHHTTCEEES---SCCTTCCEEEESSSSCCCSHHHHHHHHTTCEEEETHHHHHHHHHTSC
T ss_pred CEEEEECCCCHHHHHHHHHHHHHCCCEEEC---CCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEECHHHHHHHHHCCCC
T ss_conf 889997899989999999999983999937---77999728997189753579999998569979658999999986983
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCEEECCCCCCC-CC
Q ss_conf 78988401379989556434331045689898308999999589996489999988999998839949941699953-44
Q 000734 1092 LLEEPYEWHKNGLSEDGAINLEAPRKWRLLRERTGHGAFHGMRIIVYGDCIAPPLDTLKRVVKAGDGNILATSPPYT-RF 1170 (1324)
Q Consensus 1092 LdEe~YEl~d~~~~~d~~~~~~aprrwRl~~~~~~~~LF~G~~v~i~~~~v~p~~~~Lk~LIeaGGGkVv~~~Pp~~-~~ 1170 (1324)
+||++|+|.+ +|+++|+.+.+...++|.|+.||+++++..++++.|++||++|||+++...|... ..
T Consensus 79 ~~e~~y~~~~------------~~~~~r~~~~~~~~~lF~g~~~~l~~~~~~~~~~~l~~lI~~~GG~v~~~~p~~~~~~ 146 (210)
T 2nte_A 79 EQEEKYEIPE------------GPRRSRLNREQLLPKLFDGCYFYLWGTFKHHPKDNLIKLVTAGGGQILSRKPKPDSDV 146 (210)
T ss_dssp CCGGGTBCTT------------HHHHHHHHHHTTCCCTTTTCEEEECSCCSSSCHHHHHHHHHHTTCEEESSCCCGGGCG
T ss_pred CCHHHCCCCC------------CCHHHHHCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHCCCEEEECCCCCCCCC
T ss_conf 7866645778------------8744310101036221284489996567877899999999978988983589974212
Q ss_pred CCC---------------C-CCEEECCCCCCHHHHHHHHHHHCCCCEEEECCEEEEEEE
Q ss_conf 466---------------6-550001699960458899998429754331202124630
Q 000734 1171 LNS---------------G-VDFAVVSPGMPRVDLWVQEFLKHEIPCVVADYLVEFVCK 1213 (1324)
Q Consensus 1171 t~~---------------~-vd~~IIs~~~~~~d~~~~~L~k~GIpCvs~EyIldyvck 1213 (1324)
+.. . ..+++..++..... ......++++++++|++++|-.
T Consensus 147 ~~~~~~v~~~~~~~~~~~~~t~~iv~~~~~~~~~---~~~~~~~v~~V~~~Wl~dcI~~ 202 (210)
T 2nte_A 147 TQTINTVAYHARPDSDQRFCTQYIIYEDLCNYHP---ERVRQGKVWKAPSSWFIDCVMS 202 (210)
T ss_dssp GGSSCCCCTTSCTTCGGGTCCEEEEECSCSSCCC---SCSEETTEEEEEHHHHHHHHHH
T ss_pred CCCCCEEEECCCCCCCCCCCEEEEEECCCCCCCH---HHHHCCCCCCCCHHHHHHHHHH
T ss_conf 3565514404677766664428999526642187---8885168631258899999974
No 8
>3u3z_A Microcephalin; DNA repair, cell cycle regulation, cell cycle; HET: SEP PTR; 1.50A {Homo sapiens} PDB: 3szm_A* 3t1n_A* 3sht_A 3shv_A*
Probab=1.00 E-value=1 Score=215.13 Aligned_cols=173 Identities=16% Similarity=0.238 Sum_probs=137.5
Q ss_pred CCEEEEEECCH-HHHHHHHHHHHHHCCEEEECCCCCCCCCCEEECCCCCCCHHHHHHHHCCCEEECHHHHHHHHHCCCCC
Q ss_conf 88399980676-87999999999838889510886578532999099874099999983299263266899975229887
Q 000734 1014 EPIWFILSGHR-LQRKEFQVVIRHLKGRLCRDSHQWSYQATHFIAPEIRRTEKFFAAAASGRWILKTDYLSACSQAGKFL 1092 (1324)
Q Consensus 1014 e~~villSGLs-~ek~~L~k~Ik~LGG~V~~d~~~~s~~~THLI~~~~kRT~K~L~AIA~GkWIVsp~WI~dS~kaGkfL 1092 (1324)
...+|++||++ +++..+.++|++|||..+. .+++..|||||++...||+|||+|||+|+|||+++||.+|+++|+|+
T Consensus 10 ~~~~~~~sgl~~~~~~~l~~~i~~lgG~~~~--~~~~~~~THlv~~~~~rT~K~l~ai~~g~~Iv~~~Wv~~~~~~g~~l 87 (199)
T 3u3z_A 10 PTRTLVMTSMPSEKQNVVIQVVDKLKGFSIA--PDVCETTTHVLSGKPLRTLNVLLGIARGCWVLSYDWVLWSLELGHWI 87 (199)
T ss_dssp CCCEEEEESCCHHHHHHHHHHHHHHCSCEEE--SSCCTTEEEEEESSCCCBHHHHHHHHTTCEEEETHHHHHHHHHTSCC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHCCCCEEE--CCCCCCCEEEEECCCCCCHHHHHHHHCCCCEEEHHHHHHHHHCCCCC
T ss_conf 8729998188999999999999983994880--67799975999899899899999987799698079999985678978
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH----HHCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCEEECCCCCCC
Q ss_conf 8988401379989556434331045689898----308999999589996489999988999998839949941699953
Q 000734 1093 LEEPYEWHKNGLSEDGAINLEAPRKWRLLRE----RTGHGAFHGMRIIVYGDCIAPPLDTLKRVVKAGDGNILATSPPYT 1168 (1324)
Q Consensus 1093 dEe~YEl~d~~~~~d~~~~~~aprrwRl~~~----~~~~~LF~G~~v~i~~~~v~p~~~~Lk~LIeaGGGkVv~~~Pp~~ 1168 (1324)
||++|+|.++.. ....+|+.+. ....+||.|+.|++.+++..|+++.|+.||+++||+|+.....
T Consensus 88 ~e~~y~~~~~~~---------~~~~~rl~r~~~~~~~~~~LF~g~~~~~v~~~~~~~~~~L~~lI~~~GG~v~~~~~~-- 156 (199)
T 3u3z_A 88 SEEPFELSHHFP---------AAPLCRSECHLSAGPYRGTLFADQPVMFVSPASSPPVAKLCELVHLCGGRVSQVPRQ-- 156 (199)
T ss_dssp CSGGGBCTTTCT---------HHHHHHHHHHHCSSSCCCCTTTTSCCEEECTTCSSCHHHHHHHHHHTTCCBCSSGGG--
T ss_pred CHHHCCCCCCCC---------CCCCCHHHHHHHCCCCCCHHHCCCEEEEECCCCCCCHHHHHHHHHHCCCEEECCCCC--
T ss_conf 754335667864---------453202341320233344010798599978998878999999999859899565787--
Q ss_pred CCCCCCCCEEECCCCCCHHHHHHHHHHHCCCCEEEECCEEEEEEEC
Q ss_conf 4446665500016999604588999984297543312021246304
Q 000734 1169 RFLNSGVDFAVVSPGMPRVDLWVQEFLKHEIPCVVADYLVEFVCKP 1214 (1324)
Q Consensus 1169 ~~t~~~vd~~IIs~~~~~~d~~~~~L~k~GIpCvs~EyIldyvckp 1214 (1324)
.+++| .+. . . -...+++|++++||+|.|..-
T Consensus 157 ------~~iiI-~~~-~--~-----~~~~~~~~V~p~Wi~DsI~~~ 187 (199)
T 3u3z_A 157 ------ASIVI-GPY-S--G-----KKKATVKYLSEKWVLDSITQH 187 (199)
T ss_dssp ------CSEEE-SCC-C--S-----CCCTTCEEECHHHHHHHHHHT
T ss_pred ------CEEEE-ECC-C--H-----HCCCCCCEECHHHHHHHHHCC
T ss_conf ------87999-677-0--4-----413897187820899998708
No 9
>1t15_A Breast cancer type 1 susceptibility protein; protein-peptide complex, antitumor protein; HET: SEP; 1.85A {Homo sapiens} SCOP: c.15.1.3 c.15.1.3 PDB: 1jnx_X* 1t29_A* 1t2v_A* 1y98_A* 3coj_X* 3k0h_A* 3k0k_A* 3pxe_A* 3pxb_A 3pxc_X 1t2u_A 1n5o_X 3pxa_A 3k15_A* 3k16_A* 3pxd_A 2ing_X 1oqa_A
Probab=1.00 E-value=1 Score=207.86 Aligned_cols=192 Identities=21% Similarity=0.302 Sum_probs=145.9
Q ss_pred CCEEEEEECCH-HHHHHHHHHHHHHCCEEEECCCCCCCCCCEEECCCC-----CCCHHHHHHHHCCCEEECHHHHHHHHH
Q ss_conf 88399980676-879999999998388895108865785329990998-----740999999832992632668999752
Q 000734 1014 EPIWFILSGHR-LQRKEFQVVIRHLKGRLCRDSHQWSYQATHFIAPEI-----RRTEKFFAAAASGRWILKTDYLSACSQ 1087 (1324)
Q Consensus 1014 e~~villSGLs-~ek~~L~k~Ik~LGG~V~~d~~~~s~~~THLI~~~~-----kRT~K~L~AIA~GkWIVsp~WI~dS~k 1087 (1324)
+.++|++||+. .++..+.++++++||.+. .+|+..|||||+... .||+|||+|++.|+|||+++||.+|++
T Consensus 3 ~~~~~~~sg~~~~~~~~l~~~~~~~G~~~~---~~~~~~~THli~~~~~~~~~~rt~k~~~a~~~g~~IV~~~Wl~~~~~ 79 (214)
T 1t15_A 3 KRMSMVVSGLTPEEFMLVYKFARKHHITLT---NLITEETTHVVMKTDAEFVCERTLKYFLGIAGGKWVVSYFWVTQSIK 79 (214)
T ss_dssp -CCEEEEESCCHHHHHHHHHHHHHHTCEEC---SSCCTTCCEEEECBCTTSEECCBHHHHHHHHTTCEEEETHHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHCCEEE---CCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEECHHHHHHHHH
T ss_conf 768999789998999999999999499992---76599973899868854322324999999866997967899999997
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCEEECCCCCC
Q ss_conf 29887898840137998955643433104568989830899999958999648999998899999883994994169995
Q 000734 1088 AGKFLLEEPYEWHKNGLSEDGAINLEAPRKWRLLRERTGHGAFHGMRIIVYGDCIAPPLDTLKRVVKAGDGNILATSPPY 1167 (1324)
Q Consensus 1088 aGkfLdEe~YEl~d~~~~~d~~~~~~aprrwRl~~~~~~~~LF~G~~v~i~~~~v~p~~~~Lk~LIeaGGGkVv~~~Pp~ 1167 (1324)
+|+|+||++|+|.++.... ....+|+++|. ....++|.|+.|||.+.+..++++.|..||+++||+++...+..
T Consensus 80 ~~~~~~e~~y~~~~~~~~~---~~~~~~~~~r~---~~~~~lF~g~~~~~~~~~~~~~~~~l~~li~~~GG~v~~~~~~~ 153 (214)
T 1t15_A 80 ERKMLNEHDFEVRGDVVNG---RNHQGPKRARE---SQDRKIFRGLEICCYGPFTNMPTDQLEWMVQLCGASVVKELSSF 153 (214)
T ss_dssp TTSCCCGGGGBCCEETTTB---TTCCHHHHHHT---CTTSCTTTTCEEEECSCCSSSCHHHHHHHHHHTTCEECCSGGGC
T ss_pred CCCCCCHHHEEEECCCCCC---CCCCCHHHHHH---CCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCEEECCCCCC
T ss_conf 7991885776860220666---46521456764---17876658978999706889899999999997799893685544
Q ss_pred CCCCCCCCC-EEECCCCCCHHHHHHHH-HHHCCCCEEEECCEEEEEEECCC
Q ss_conf 344466655-00016999604588999-98429754331202124630486
Q 000734 1168 TRFLNSGVD-FAVVSPGMPRVDLWVQE-FLKHEIPCVVADYLVEFVCKPGY 1216 (1324)
Q Consensus 1168 ~~~t~~~vd-~~IIs~~~~~~d~~~~~-L~k~GIpCvs~EyIldyvckpgc 1216 (1324)
.. ..... ++++.++........+. ....++++++++||++++.+..+
T Consensus 154 ~~--~~~~~~ivi~~~~~~~~~~~~~~~a~~~~~~iV~~~Wi~dsi~~~~~ 202 (214)
T 1t15_A 154 TL--GTGVHPIVVVQPDAWTEDNGFHAIGQMCEAPVVTREWVLDSVALYQC 202 (214)
T ss_dssp CC--STTCCEEEEECGGGCSSCGGGGSSTTTCSSCEEEHHHHHHHHHHTSC
T ss_pred CC--CCCCCCEEEECCCCCCCHHHHHHHHHHCCCCEEECCHHHHHHHHCCC
T ss_conf 45--88974089988886632446899999639928701689976865676
No 10
>1l0b_A BRCA1; TANDEM-BRCT, three-helix bundle, unknown function; 2.30A {Rattus norvegicus} SCOP: c.15.1.3 c.15.1.3
Probab=1.00 E-value=1 Score=190.13 Aligned_cols=186 Identities=15% Similarity=0.138 Sum_probs=151.5
Q ss_pred CCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEECCCCCCEEEEECCCC----CCCHHHHHHHCCCCEEECHHHHHHHH
Q ss_conf 99988839999415932099999999919989980669961299959977----78537686530998384199999999
Q 000734 7 SKPFIGVRFVLFGFDPINERQVRSKLIDGGGVDVGLYTQSCTHVIVDKIV----FDDSVCVAARTDGKTLVTSLWVDHSL 82 (1324)
Q Consensus 7 s~iF~Gv~F~IsGfd~~e~kqLr~lIk~~GGtv~s~fss~VTHLIvd~~~----~dt~ky~~A~~~g~~IVTp~WI~dCi 82 (1324)
...|.+++|+++|+.+..+..|.+++..+||.+..+++..|||||+.... ..+.+|..|...|++||++.||.+|+
T Consensus 2 ~~~~~~~~i~~sg~~~~~~~~l~~~~~~~G~~~~~~~~~~~THlI~~~~~~~~~~rt~K~~~a~~~g~~IV~~~Wl~~~~ 81 (229)
T 1l0b_A 2 ERAERDISMVVSGLTPKEVMIVQKFAEKYRLALTDVITEETTHVIIKTDAEFVCERTLKYFLGIAGGKWIVSYSWVIKSI 81 (229)
T ss_dssp -CCCCCCEEEEESCCHHHHHHHHHHHHHTTCEECSSCCSSCCEEEECBCTTSEECCCHHHHHHHHTTCEEEETHHHHHHH
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHHCCCEEECCCCCCCCEEEECCCCCCCCCCCHHHHHHHHCCCCEECHHHHHHHH
T ss_conf 87778759998589989999999999980999958769998789973786544356599999998899096699999999
Q ss_pred HCCCCCCCCCCCCCC-CCC-----------CCCCCCCCCEEEEECC-CCCCCHHHHHHHHHHHCCEECCCCCCC-----C
Q ss_conf 829986732011255-644-----------4566687860899748-881129999999998099860776479-----7
Q 000734 83 DIGMPVDAASIMYRP-LKD-----------LNGIHGANSLVMCLTG-YQRQDREDIMTLVRLMGSQFSKPLVAN-----K 144 (1324)
Q Consensus 83 ~~gklLd~~~~l~~P-l~~-----------~~~Lp~F~GlvIslSG-f~~~er~~L~~lI~~lGGkvst~Lis~-----~ 144 (1324)
..++++++..|.... ... ....+.|.|+.|++.| +....+..|..+|+.+||++...+ .. .
T Consensus 82 ~~~~~~~e~~y~~~~~~~~~~~~~~~~~~r~~~~~lF~g~~~~~~~~~~~~~~~~l~~li~~~GG~v~~~~-~~~~~~~~ 160 (229)
T 1l0b_A 82 QERKLLSVHEFEVKGDVVTGSNHQGPRRSRESQEKLFEGLQIYCCEPFTNMPKDELERMLQLCGASVVKEL-PLLTRDTG 160 (229)
T ss_dssp TTTSCCCSGGGBCCEETTTCSSSCHHHHHHHHC--CCTTCEEEECSCCSSSCHHHHHHHHHHTTCEEECSS-SCGGGCCS
T ss_pred HCCCCCCHHHEEECCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHCCCEEECCC-CCCCCCCC
T ss_conf 87882781775752541455334650665542466646966999725789899999999997899896881-34665579
Q ss_pred CEEEEECCC----CCHHHHHH-HCCCCCEEECHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 119997227----73578999-817997276656899999938789987778889
Q 000734 145 VTHLICYKF----EGEKYELA-KKIKSIKLVNHRWLEDCLRVWELLPEVNYDKSG 194 (1324)
Q Consensus 145 vTHLVv~~~----~g~Ky~~A-kk~p~IkIVs~eWL~DCI~~~klLdE~~Y~~~g 194 (1324)
++|+|+..+ ...++..+ ... +++||+++||+||+..+.+++++.|++..
T Consensus 161 ~~~~vvv~~~~~~~~~~~~~l~~~~-~i~iVs~~WlldsI~~~~~~~~~~Y~l~~ 214 (229)
T 1l0b_A 161 AHPIVLVQPSAWTEDNDCPDIGQLC-KGRLVMWDWVLDSISVYRCRDLDAYLVQN 214 (229)
T ss_dssp SCCEEEEC--------------------CEEETHHHHHHHHTTSCCCGGGGBCC-
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHC-CCEEEEHHHHHHHHHCCCCCCCCCEECCC
T ss_conf 8539998088410022599999875-99086023899988638868963647346
Done!