Query 000735
Match_columns 1324
No_of_seqs 645 out of 4481
Neff 6.1
Searched_HMMs 29240
Date Tue Mar 26 16:42:43 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000735.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_506-510//hhsearch_pdb/000735hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1g7s_A Translation initiation 1.0 1 1 786.9 44.6 525 791-1324 2-531 (594)
2 1zo1_I IF2, translation initia 1.0 1 1 678.6 14.5 454 792-1324 2-478 (501)
3 3izy_P Translation initiation 1.0 1 1 654.6 16.8 456 792-1324 2-520 (537)
4 3vqt_A RF-3, peptide chain rel 1.0 1 1 283.3 17.7 292 789-1109 28-397 (548)
5 1wb1_A Translation elongation 1.0 1 1 282.7 16.5 260 785-1110 10-280 (482)
6 3mca_A HBS1, elongation factor 1.0 1 1 281.9 18.3 257 793-1115 176-490 (592)
7 3j2k_7 ERF3, eukaryotic polype 1.0 1 1 277.4 25.7 262 793-1115 16-328 (439)
8 3avx_A Elongation factor TS, e 1.0 1 1 275.6 21.7 259 793-1114 295-581 (1289)
9 3j25_A Tetracycline resistance 1.0 1 1 275.0 12.3 251 791-1055 1-286 (638)
10 4fn5_A EF-G 1, elongation fact 1.0 1 1 273.5 19.9 289 790-1109 11-401 (709)
No 1
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=1.00 E-value=1 Score=786.91 Aligned_cols=525 Identities=38% Similarity=0.696 Sum_probs=469.3
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCCCHHHHCCC--CCCCCCCCEEEEECCCCC
Q ss_conf 799979999908999878999999839643555575036520367113320000111013--434567979999199984
Q 000735 791 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKA--NATLKVPGLLVIDTPGHE 868 (1324)
Q Consensus 791 ~~R~piV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~~~e~i~~~~~~i~~--~~~~~~~~i~iIDTPGHe 868 (1324)
++|+|+|+|+||+|||||||+++|+++.+...+.+|||++++++++++..+......+.. ...+..+.|+|||||||+
T Consensus 2 ~~r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe 81 (594)
T 1g7s_A 2 KIRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHE 81 (594)
T ss_dssp EECCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTS
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEECCCCEEEEEECHHHHHCCCCCCCCCCCCCCCCEEEEECCCCH
T ss_conf 98881999999999739999999966667656678600213719986201121024323553222554888999897937
Q ss_pred CHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 11456640267665017862334688677899999987049937998401344357654788128999998759999999
Q 000735 869 SFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEF 948 (1324)
Q Consensus 869 ~F~~lr~rg~s~aDiaILVVDa~~Gv~~QT~E~l~lL~~~~iPiIVviNKiD~~~~w~~~~~adi~~~L~~q~~~i~~ef 948 (1324)
+|+.++.++++.||++|||||+++|+++||+++|.++...++|+|||+||||+...|....+.++...+..+...+...|
T Consensus 82 ~F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~v~~~~ 161 (594)
T 1g7s_A 82 AFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKL 161 (594)
T ss_dssp CCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 89999997775399999999799885476799999999749809999625666433333347746899987678888877
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHH--HCCCCCCEEEEEEEE
Q ss_conf 898999999999817831333112478984039947876689901589999999778687542--014545116999999
Q 000735 949 NMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKL--TFRNELQCTVLEVKV 1026 (1324)
Q Consensus 949 ~~~i~~I~~~l~~~Gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~L~~l~~~~l~e~l--~~~~~~~~~VlEvk~ 1026 (1324)
...+..+...|...++..+.|+....++..++++|+||++|.||.+|+.+|..+++.++...+ ....+++++|++++.
T Consensus 162 ~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~~~~~~l~~~~~~p~~~~V~~~~~ 241 (594)
T 1g7s_A 162 DTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQYLREQLKIEEDSPARGTILEVKE 241 (594)
T ss_dssp HHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHHCSGGGEECTTSBCEEEEEEEEE
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHCCCCCHHHHCCCCCCCCEEEEEEEEE
T ss_conf 77899999999875861678998875167622898764678882557899975340000234124557885048999998
Q ss_pred ECCCEEEEEEEEEEEEECCCCEEEECCCCCCEEEEEEECCCCCCCCEEE-ECCEEECCCCCCCCCCEEEECCCCCCCCCC
Q ss_conf 8086159999998106528988988056896057765303898872001-022100000001224605601565323479
Q 000735 1027 IEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELR-VKGTYLHHKQIKAAQGIKITAQGLEHAIAG 1105 (1324)
Q Consensus 1027 i~G~G~vi~~iV~~G~Lr~GD~IVv~g~~g~~v~~Ir~Ll~p~p~~e~r-Vk~~~~~~kev~aa~gvki~~~gL~~a~aG 1105 (1324)
++|.|++++++|.+|+|+.||.|++++.+++..++|++|++|.|+.++| ....+...+++.+++|+.+++.||..+.+|
T Consensus 242 d~g~G~v~~~rV~~G~Lk~Gd~v~~~~~~~~~~~rV~~i~~~~~~~elr~~~~~~~~v~ea~~~aG~~v~~~~l~~~~~G 321 (594)
T 1g7s_A 242 ETGLGMTIDAVIYDGILRKDDTIAMMTSKDVISTRIRSLLKPRPLEEMRESRKKFQKVDEVVAAAGIKIVAPGIDDVMAG 321 (594)
T ss_dssp ETTEEEEEEEEEEESEEETTCEEEEEBSSSEEEEECCEEEEECCCC----CCCSEEECSEEESSEEEEEECSSCTTBCTT
T ss_pred ECCCEEEEEEEEEECEEEECCEEEECCCCCCEEEEEEEEEECCCCCHHHHCCCCCEECCEECCCCCCEEEECCCCCCCCC
T ss_conf 07957999999962879619999988889845689869980266213331357856813885799809997466788999
Q ss_pred CCEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHCCCCCEEEEEEEEECCCCCCHHHHHH
Q ss_conf 84399299861899999999989999864200388449970884659999987235981233778550845421288897
Q 000735 1106 TGLYVVGPDDDLEDVKEEAMEDMKSVMSRIDKSGEGVCVQASTLGSLEALLEFLKSDAVKIPVSGISIGPVHKKDVMRAS 1185 (1324)
Q Consensus 1106 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~gv~vkadt~GSlEAi~~~L~~~~~~i~v~~~~iG~V~~~DV~~A~ 1185 (1324)
+.|.++.++ +.+++.++.++.++ ++.....||||||||+||||||+++|.. .+|||++++||+||++||++|+
T Consensus 322 d~l~~~~~~---~~~~~~~~~~~~~~--~~~~~~~~~~vkad~~gs~eal~~~l~~--~~~~v~~~~vg~i~~~dv~~a~ 394 (594)
T 1g7s_A 322 SPLRVVTDP---EKVREEILSEIEDI--KIDTDEAGVVVKADTLGSLEAVVKILRD--MYVPIKVADIGDVSRRDVVNAG 394 (594)
T ss_dssp CEEEECSSH---HHHHHHHHHHHHTT--SCBCSSSCCEEEESSHHHHHHHHHHHHH--TTCCCSEEEESSBCHHHHHHHH
T ss_pred CEEEECCCH---HHHHHHHHHHHHHC--CCCCCCCCEEEEECCCCCHHHHHHHHHH--CCCCEEECCCCCCCHHHHHHHH
T ss_conf 988815998---99999999988743--3544446479983787889999999984--7875795146888788999987
Q ss_pred HHHCCCCCCCEEEEECCCCCHHHHHHHHHHCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECEEEEECCCCCC
Q ss_conf 42000246739998089999779999998098099823377799999999823346777763051110305776156312
Q 000735 1186 VMLEKKKEYATILAFDVKVTPEARELAEELGVKIFIADIIYHLFDQFTAYINNLKEEKKREAADEAVFPCVLKILPNCVF 1265 (1324)
Q Consensus 1186 ~~~~~~~~~a~IlaFnVkv~~~a~~~A~~~gV~I~~~~IIY~L~d~~~~~~~~l~~~~~~e~~~~av~p~~l~i~~~~vf 1265 (1324)
+|++++|.||+||||||+++++|+.+|++.||+||+|+|||||+|+|++||.+++++.+++..+.++|||.++|++++||
T Consensus 395 ~~~~~~~~~a~i~~fnv~~~~~~~~~a~~~~v~i~~~~iiy~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~f 474 (594)
T 1g7s_A 395 IALQEDRVYGAIIAFNVKVIPSAAQELKNSDIKLFQGNVIYRLMEEYEEWVRGIEEEKKKKWMEAIIKPASIRLIPKLVF 474 (594)
T ss_dssp HHHTTCTTSCEEEEESCCBCHHHHHHTSSSSSEEEEESCHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCEEEEEEEEEEE
T ss_pred HHHCCCCCCCEEEEECCCCCHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHHCCCHHHHHHHHEEEEEEEEEEECCEEE
T ss_conf 43113767878999578689889999997498699877799999999998653045155544324420289999311389
Q ss_pred CCCCCEEEEEEEEECEEECCCCEEECCCCEEEEEEEECHHCCCCCCCCCCCCCCEEEEC
Q ss_conf 68998599899841156219968823992999886500001375424323798119959
Q 000735 1266 NKKDPIVLGVDVVEGIAKVGTPICIPQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKV 1324 (1324)
Q Consensus 1266 ~~k~~~IaG~~V~~G~lk~g~~i~v~~~~~i~~G~i~Slk~~k~~v~~~~kG~e~~i~i 1324 (1324)
+.++|+||||+|++|+|++|+++|+|++ +|.|+|.||+|+|++|++|++|+||||+|
T Consensus 475 ~~~~~~i~g~~v~~G~~~~~~~~~~~~~--~~~g~i~sl~~~k~~v~~~~~g~e~gi~~ 531 (594)
T 1g7s_A 475 RQSKPAIGGVEVLTGVIRQGYPLMNDDG--ETVGTVESMQDKGENLKSASRGQKVAMAI 531 (594)
T ss_dssp ECSSSEEEEEEEEEEEEETTCEEECTTS--CEEEEEEEEEETTEEESEEETTCCEEEEE
T ss_pred CCCCCEEEEEEEECCEEECCCEEEECCC--CEEEEEEHHCCCCCCCCCCCCCCEEEEEE
T ss_conf 2799869999996188954985996699--37998851321584225127897899998
No 2
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=1.00 E-value=1 Score=678.57 Aligned_cols=454 Identities=29% Similarity=0.439 Sum_probs=369.0
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCCCHHHHCCCCCCCCCCCEEEEECCCCCCHH
Q ss_conf 99979999908999878999999839643555575036520367113320000111013434567979999199984114
Q 000735 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 871 (1324)
Q Consensus 792 ~R~piV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~~~e~i~~~~~~i~~~~~~~~~~i~iIDTPGHe~F~ 871 (1324)
.|+|+|+||||+|||||||+++|+++.+..++.+|||++++.+++.+.. ..|+|||||||++|.
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~----------------~~i~~iDTPGhe~f~ 65 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETEN----------------GMITFLDTPGHAAFT 65 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTS----------------SCCCEECCCTTTCCT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEEEECC----------------EEEEEEECCCCHHHH
T ss_conf 9870999999999988999999976887535689703767799999899----------------899999899857889
Q ss_pred HHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 56640267665017862334688677899999987049937998401344357654788128999998759999999898
Q 000735 872 NLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1324)
Q Consensus 872 ~lr~rg~s~aDiaILVVDa~~Gv~~QT~E~l~lL~~~~iPiIVviNKiD~~~~w~~~~~adi~~~L~~q~~~i~~ef~~~ 951 (1324)
.++.++++.+|++|||||+++|+++||+++|.++...++|+||++||||+.. |....
T Consensus 66 ~~~~~~~~~aD~aILVVda~~g~~~qT~e~l~~~~~~~vPiIVviNKiDl~~-~~~~~---------------------- 122 (501)
T 1zo1_I 66 SMRARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVPVVVAVNKIDKPE-ADPDR---------------------- 122 (501)
T ss_dssp TSBCSSSBSCSSEEEEEETTTBSCTTTHHHHHHHHHTTCCEEEEEECSSSST-TCCCC----------------------
T ss_pred HHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCC-CCHHH----------------------
T ss_conf 9999887538899999425667627789999988862964999997326543-57778----------------------
Q ss_pred HHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCE
Q ss_conf 99999999981783133311247898403994787668990158999999977868754201454511699999980861
Q 000735 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQCTVLEVKVIEGHG 1031 (1324)
Q Consensus 952 i~~I~~~l~~~Gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~L~~l~~~~l~e~l~~~~~~~~~VlEvk~i~G~G 1031 (1324)
+...+...++.. ..|+..++++++||++|.||.+|+.+|.... ..+.....+..++.++|++++.++|.|
T Consensus 123 ---v~~~l~~~~~~~------~~~~~~~~~v~vSAktG~gI~eLle~I~~~~-~~~~~~~~~~~~~~~~V~e~~~d~g~G 192 (501)
T 1zo1_I 123 ---VKNELSQYGILP------EEWGGESQFVHVSAKAGTGIDELLDAILLQA-EVLELKAVRKGMASGAVIESFLDKGRG 192 (501)
T ss_dssp ---TTCCCCCCCCCT------TCCSSSCEEEECCTTTCTTCTTHHHHTTTTC-CCSTTTSCCCSBCEEEEEEEEECSSSS
T ss_pred ---HHHHHHHHHHHH------HHHCCCCCEEEEEEEECCCCCHHHHHHHHHH-HHHCCCCCCCCCCCCCEEEEEEECCCE
T ss_conf ---889998721028------8727876079986430357403555556555-432101223565543159999727928
Q ss_pred EEEEEEEEEEEECCCCEEEECCCCCCEEEEEEECCCCCCCCEEEECCEEECCCCCCCCCCEEEECCCCCC-CCCCCCEEE
Q ss_conf 5999999810652898898805689605776530389887200102210000000122460560156532-347984399
Q 000735 1032 TTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAAQGIKITAQGLEH-AIAGTGLYV 1110 (1324)
Q Consensus 1032 ~vi~~iV~~G~Lr~GD~IVv~g~~g~~v~~Ir~Ll~p~p~~e~rVk~~~~~~kev~aa~gvki~~~gL~~-a~aG~~~~v 1110 (1324)
++++++|.+|+|+.||.++++ +...+||+|++++... .+++. +|..+.+.||.. +.+|+.+++
T Consensus 193 ~v~~~~V~~Gtlk~Gd~v~~g----~~~~kVr~i~~~~g~~----------v~~a~--~g~~V~i~gl~~~~~~Gd~~~~ 256 (501)
T 1zo1_I 193 PVATVLVREGTLHKGDIVLCG----FEYGRVRAMRNELGQE----------VLEAG--PSIPVEILGLSGVPAAGDEVTV 256 (501)
T ss_dssp EEEEEEEEESBCCTTCEEEEE----BSSCEEEEECCTTTTS----------EEEEC--CSSCSSSEEECSCCCTTEEEEE
T ss_pred EEEEEEEEEEEEECCCEEEEC----CCEEEEEEEEECCCCC----------CCEEC--CCCCEEEECCCCCCCCCCEEEE
T ss_conf 999999985699059889976----5133999998048986----------75864--5772799678798989998994
Q ss_pred ECCCCCHH-------------HHHHHHHHHHHHHHHHHH---CCCCCEEEEECCCCCHHHHHHHHC---CCCCEEEEEEE
Q ss_conf 29986189-------------999999998999986420---038844997088465999998723---59812337785
Q 000735 1111 VGPDDDLE-------------DVKEEAMEDMKSVMSRID---KSGEGVCVQASTLGSLEALLEFLK---SDAVKIPVSGI 1171 (1324)
Q Consensus 1111 ~~~~~~~~-------------~~~~~~~~~~~~~~~~i~---~~~~gv~vkadt~GSlEAi~~~L~---~~~~~i~v~~~ 1171 (1324)
+.++++++ .+....+..+.++++++. ....|+||||||+||||||+.+|. +++++++|+++
T Consensus 257 ~~~~~~a~~~~~~r~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ivkad~~gs~ea~~~~l~~~~~~~~~~~v~~~ 336 (501)
T 1zo1_I 257 VRDEKKAREVALYRQGKFREVKLARQQKSKLENMFANMTEGEVHEVNIVLKADVQGSVEAISDSLLKLSTDEVKVKIIGS 336 (501)
T ss_dssp ECSSCTTBCSSCBTTCCCCSHHHHHHHHHHHSSTTTSCSSCCCCCCCCBCCCSCHHHHHHHHHHHTTTTCCCSBCCCCCS
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEE
T ss_conf 28878988999999999999987665330699998666316874577999978867899999999861645630479981
Q ss_pred EECCCCCCHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHCCEEEECCHHHHHHHHHHHHHHHHHHHHHH-HHCCC
Q ss_conf 50845421288897420002467399980899997799999980980998233777999999998233467777-63051
Q 000735 1172 SIGPVHKKDVMRASVMLEKKKEYATILAFDVKVTPEARELAEELGVKIFIADIIYHLFDQFTAYINNLKEEKKR-EAADE 1250 (1324)
Q Consensus 1172 ~iG~V~~~DV~~A~~~~~~~~~~a~IlaFnVkv~~~a~~~A~~~gV~I~~~~IIY~L~d~~~~~~~~l~~~~~~-e~~~~ 1250 (1324)
+||+||++||++|++ +||+||||||+++++++.+|++.||+||+|+|||||||+|++||.+++++... ...|.
T Consensus 337 ~vG~i~~~Dv~~a~~------~~a~i~~fnv~~~~~~~~~a~~~~v~i~~~~iiy~l~~~~~~~~~~~~~~~~~~~~~g~ 410 (501)
T 1zo1_I 337 GVGGITETDATLAAA------SNAILVGFNVRADASARKVIEAESLDLRYYSVIYNLIDEVKAAMSGMLSPELKQQIIGL 410 (501)
T ss_dssp SSSSSHHHHSTTTCG------GGCCEEECSSCCCHHHHTTSCSSSSCEEESCCCSHHHHHTHHHHTTTSSTTCCCCCCCC
T ss_pred CCCCCCHHHHHHHHH------CCCEEEEECCCCCHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHHCCCEEEEEEEEE
T ss_conf 368889899998773------18879995588997899999974987999077999999999998764184256420058
Q ss_pred EEECEEEEECCCCCCCC-CCCEEEEEEEEECEEECCCCEEE-CCCCEEEEEEEECHHCCCCCCCCCCCCCCEEEEC
Q ss_conf 11030577615631268-99859989984115621996882-3992999886500001375424323798119959
Q 000735 1251 AVFPCVLKILPNCVFNK-KDPIVLGVDVVEGIAKVGTPICI-PQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKV 1324 (1324)
Q Consensus 1251 av~p~~l~i~~~~vf~~-k~~~IaG~~V~~G~lk~g~~i~v-~~~~~i~~G~i~Slk~~k~~v~~~~kG~e~~i~i 1324 (1324)
|.+. .||+. +.|+||||+|++|+|++|+++|| |++.+||.|+|.||+|+|++|++|++|+||||.|
T Consensus 411 a~v~--------~~f~~~~~~~iaG~~v~~G~~~~~~~~~~~r~~~~i~~g~i~sl~~~k~~v~e~~~g~ecgi~~ 478 (501)
T 1zo1_I 411 AEVR--------DVFKSPKFGAIAGCMVTEGVVKRHNPIRVLRDNVVIYEGELESLRRFKDDVNEVRNGMECGIGV 478 (501)
T ss_dssp EEEE--------ECSSCCCSSCEEEEEEEEEEEETTCEEECCSSSCCCEEEEBCCEEETTEEESEEETTCCEEEEB
T ss_pred EEEE--------EEEECCCCCEEEEEEEEECEEECCCEEEEEECCEEEEEEEEEHHCCCCCCCCEECCCCEEEEEE
T ss_conf 9999--------9996599988999999708896398599970880899878811343686216988998899997
No 3
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=1.00 E-value=1 Score=654.59 Aligned_cols=456 Identities=27% Similarity=0.390 Sum_probs=366.5
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCCCHHHHCCCCCCCCCCCEEEEECCCCCCHH
Q ss_conf 99979999908999878999999839643555575036520367113320000111013434567979999199984114
Q 000735 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 871 (1324)
Q Consensus 792 ~R~piV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~~~e~i~~~~~~i~~~~~~~~~~i~iIDTPGHe~F~ 871 (1324)
.|+|+|+||||+|||||||+++|++..+...+.+|+|++++.+.+.+.. ...|+|||||||+.|.
T Consensus 2 ~r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~---------------g~~i~~iDTPGhe~f~ 66 (537)
T 3izy_P 2 PRSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPS---------------GEKITFLDTPGHAAFS 66 (537)
T ss_dssp CCCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSC---------------SSCCBCEECSSSCCTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEEEECC---------------CCEEEEEECCCHHHHH
T ss_conf 9899999999989998999999958876620179666887699999489---------------9789999898848999
Q ss_pred HHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 56640267665017862334688677899999987049937998401344357654788128999998759999999898
Q 000735 872 NLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1324)
Q Consensus 872 ~lr~rg~s~aDiaILVVDa~~Gv~~QT~E~l~lL~~~~iPiIVviNKiD~~~~w~~~~~adi~~~L~~q~~~i~~ef~~~ 951 (1324)
.++.++++.+|++|||||+++|+++||+++|.++...++|+||++||+|+... ....
T Consensus 67 ~~~~~~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~~~vPiIVViNKiDl~~~-~~~~---------------------- 123 (537)
T 3izy_P 67 AMRARGTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVPIVLAINKCDKAEA-DPEK---------------------- 123 (537)
T ss_dssp TSBBSSSBSBSSCEEECBSSSCCCHHHHHHHHHHHTTTCCEEECCBSGGGTTT-SCCS----------------------
T ss_pred HHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCC-CHHH----------------------
T ss_conf 99999871198899999799986477899999998759968999943432334-2588----------------------
Q ss_pred HHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCE
Q ss_conf 99999999981783133311247898403994787668990158999999977868754201454511699999980861
Q 000735 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQCTVLEVKVIEGHG 1031 (1324)
Q Consensus 952 i~~I~~~l~~~Gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~L~~l~~~~l~e~l~~~~~~~~~VlEvk~i~G~G 1031 (1324)
+...+...++... .|+..++++++||++|.||.+|+.+|..+++. +.....+..+++++|++++.++|.|
T Consensus 124 ---v~~~l~~~~~~~e------~~~~~~~iv~vSAktG~GI~eLle~I~~l~~~-~~~~~~~~~~~~~~V~e~~~~~g~G 193 (537)
T 3izy_P 124 ---VKKELLAYDVVCE------DYGGDVQAVHVSALTGENMMALAEATIALAEM-LELKADPTGAVEGTVIESFTDKGRG 193 (537)
T ss_dssp ---SSSHHHHTTSCCC------CSSSSEEECCCCSSSSCSSHHHHHHHHHHHTT-CCCCCCSSSSEEEEEEEECCCTTCC
T ss_pred ---HHHHHHHHHHHHH------HCCCCCEEEEEECCCCCCCHHHHHHHHHHHHC-CCCCCCCCCCCCEEEEEEEEECCCC
T ss_conf ---9999986301377------61898339999788799950478999986530-3555788788611689999848975
Q ss_pred EEEEEEEEEEEECCCCEEEECCCCCCEEEEEEECCCCCCCCEEEECCEEECCCCCC-CCCCEEEECCCCCC-CCCCCCEE
Q ss_conf 59999998106528988988056896057765303898872001022100000001-22460560156532-34798439
Q 000735 1032 TTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIK-AAQGIKITAQGLEH-AIAGTGLY 1109 (1324)
Q Consensus 1032 ~vi~~iV~~G~Lr~GD~IVv~g~~g~~v~~Ir~Ll~p~p~~e~rVk~~~~~~kev~-aa~gvki~~~gL~~-a~aG~~~~ 1109 (1324)
++++++|.+|+|+.||.++ + |..+++||.|+++.. ..+. +.+|..+.+.||.. +.+|+.|.
T Consensus 194 ~V~~g~V~~G~l~~Gd~v~-~---g~~~~kVr~i~~~~g-------------~~v~~A~~G~~V~i~g~~~~~~~Gd~l~ 256 (537)
T 3izy_P 194 PVTTAIIQRGTLRKGSILV-A---GKSWAKVRLMFDENG-------------RAVNEAYPSMPVGIIGWRDLPSAGDEIL 256 (537)
T ss_dssp CCEEEEEEEECCSSEEEEC-C---SSCCEEEEEEEECCC-------------CCSCCSCCSTTCCCCSSEEEEEEESSCC
T ss_pred EEEEEEEECCEEECCCEEE-E---CCCEEEEEEEECCCC-------------CCCCEECCCCEEEEECCCCCCCCCCEEE
T ss_conf 3999999668897699997-3---895499999996899-------------7976986999799978878999999999
Q ss_pred EECCCCCHHHH--------HH-----------------------HHH--------HHHHHHHHH--------------HH
Q ss_conf 92998618999--------99-----------------------999--------989999864--------------20
Q 000735 1110 VVGPDDDLEDV--------KE-----------------------EAM--------EDMKSVMSR--------------ID 1136 (1324)
Q Consensus 1110 v~~~~~~~~~~--------~~-----------------------~~~--------~~~~~~~~~--------------i~ 1136 (1324)
++.++..++.+ .. ... ..+...+.. ..
T Consensus 257 ~~~~~~~a~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (537)
T 3izy_P 257 EVESEPRAREVVDWRKYEQEQEKNKEDLKLIEEKRKEHQEAHRKDREKYGTVHWKERSYIKYREKRQQQPLKPKEKLERD 336 (537)
T ss_dssp SCCSSCCCCCCSCCSSSHHHHTGGGBSSCCCCCCCCCCCCCSSTTHHHHSCSHHHHHHHHHHHHHHHHCTTTTCCCCCCC
T ss_pred ECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHCCCC
T ss_conf 56875899999999999999876532133344444555677787665410110355556666532211101101210256
Q ss_pred CCCCCEEEEECCCCCHHHHHHHHC---C-CCCEEEEEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHH
Q ss_conf 038844997088465999998723---5-981233778550845421288897420002467399980899997799999
Q 000735 1137 KSGEGVCVQASTLGSLEALLEFLK---S-DAVKIPVSGISIGPVHKKDVMRASVMLEKKKEYATILAFDVKVTPEARELA 1212 (1324)
Q Consensus 1137 ~~~~gv~vkadt~GSlEAi~~~L~---~-~~~~i~v~~~~iG~V~~~DV~~A~~~~~~~~~~a~IlaFnVkv~~~a~~~A 1212 (1324)
....++||||||+||||||+.+|. + ++|+++|++++||+||++||++|++ ++|+||||||++++.++.+|
T Consensus 337 ~~~~~~iik~d~~Gs~ea~~~~l~~~~~~~~~~~~i~~~~vG~i~~~Dv~~a~~------~~a~i~~fnv~~~~~~~~~a 410 (537)
T 3izy_P 337 SNVLPVIVKGDVDGSVEAILNVMDTYDASHECELDLVHFGVGDISENDVNLAET------FHGVIYGFNVNAGNVIQQLA 410 (537)
T ss_dssp CCCCCBEEEBCCHHHHHHHHHHHHHCCCCSSCCCCBSCCCBSCBCHHHHHHHHH------HSCCEEESSCCBCHHHHHHH
T ss_pred CCEEEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCHHHHHHHHH------CCCEEEEECCCCCHHHHHHH
T ss_conf 642559999677360999999998568887078999983078898889999874------48869995578897899999
Q ss_pred HHHCCEEEECCHHHHHHHHHHHHHHHHHHHHHHH-HCCCEEECEEEEECCCCCCC--CCCCEEEEEEEEECEEECCCCEE
Q ss_conf 9809809982337779999999982334677776-30511103057761563126--89985998998411562199688
Q 000735 1213 EELGVKIFIADIIYHLFDQFTAYINNLKEEKKRE-AADEAVFPCVLKILPNCVFN--KKDPIVLGVDVVEGIAKVGTPIC 1289 (1324)
Q Consensus 1213 ~~~gV~I~~~~IIY~L~d~~~~~~~~l~~~~~~e-~~~~av~p~~l~i~~~~vf~--~k~~~IaG~~V~~G~lk~g~~i~ 1289 (1324)
+..||+|++|+|||||+|+++++|.+++++...+ ..|.|. ++++|. |+ ++.|.||||+|++|+|++++++|
T Consensus 411 ~~~~v~i~~~~iiy~l~~~~~~~~~~~l~~~~~e~~~g~a~---v~~~f~---~~~~~~~~~iaG~~v~~G~i~~~~~~r 484 (537)
T 3izy_P 411 AKKGVKIKLHKIIYRLIEDLQEELSSRLPCIVEEHPIGEAS---ILATFS---ITEGKKKVPVAGCRVQKGQIEKQKKFK 484 (537)
T ss_dssp HHHTCCCBCSCSSCCSHHHHHHHHSSSSSCSSSCCCSSEEE---EEEEES---SCSSSCCSCEEEEEECSSEEESSSEEE
T ss_pred HHCCCEEEEECHHHHHHHHHHHHHHHCCCCCEEEEEEEEEE---ECCCEE---ECCCCCCCCEEEEEEEECEEEECCEEE
T ss_conf 87698699927499999999999974268703788889999---958189---888775671789999727286088079
Q ss_pred E-CCCCEEEEEEEECHHCCCCCCCCCCCCCCEEEEC
Q ss_conf 2-3992999886500001375424323798119959
Q 000735 1290 I-PQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKV 1324 (1324)
Q Consensus 1290 v-~~~~~i~~G~i~Slk~~k~~v~~~~kG~e~~i~i 1324 (1324)
| |++.+||.|+|.||||+|++|++|++|+||||.|
T Consensus 485 ~~r~~~~i~~g~i~slk~~k~~v~ev~~g~ecgi~~ 520 (537)
T 3izy_P 485 LIRNGHVIWKGSLISLKHHKDDTSVVKTGMDCGLSL 520 (537)
T ss_dssp EESSSSEEEEEECCCCCCSSCCCSEEETTCEEEEES
T ss_pred EECCCEEEEEEEEEHHCCCCCCCCEECCCCEEEEEE
T ss_conf 964998999988830342582543576898899997
No 4
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=1.00 E-value=1 Score=283.33 Aligned_cols=292 Identities=21% Similarity=0.245 Sum_probs=192.3
Q ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEE---EEEEECCCCCCCHHHHCCC---CCCCCCCCEEEE
Q ss_conf 3479997999990899987899999983964355557503652---0367113320000111013---434567979999
Q 000735 789 EENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQI---GATYFPAENIRERTRELKA---NATLKVPGLLVI 862 (1324)
Q Consensus 789 ~~~~R~piV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~i---ga~~~~~e~i~~~~~~i~~---~~~~~~~~i~iI 862 (1324)
...+|| |+|+||+|||||||+++|+...-.....|.+.... .+++.....-++|.++|+. ...|+.+.||||
T Consensus 28 ~~r~RN--iaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlI 105 (548)
T 3vqt_A 28 AARRRT--FAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLL 105 (548)
T ss_dssp HHTEEE--EEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEE
T ss_pred CCCCCE--EEEEECCCCCHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCHHHHHHCCCCEEECEEEEEECCEEEEEE
T ss_conf 136666--999908998899999999986686321541643766554336772889877974750469998799899999
Q ss_pred ECCCCCCHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 19998411456640267665017862334688677899999987049937998401344357654788128999998759
Q 000735 863 DTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNT 942 (1324)
Q Consensus 863 DTPGHe~F~~lr~rg~s~aDiaILVVDa~~Gv~~QT~E~l~lL~~~~iPiIVviNKiD~~~~w~~~~~adi~~~L~~q~~ 942 (1324)
|||||.+|+..+.|+++.||+||||||+..|+++||...|+++..+++|+|++|||||+. ++++...+.+...
T Consensus 106 DTPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~~lp~i~fINK~Dr~-------~ad~~~~~~~i~~ 178 (548)
T 3vqt_A 106 DTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRATPVMTFVNKMDRE-------ALHPLDVMADIEQ 178 (548)
T ss_dssp CCCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSC-------CCCHHHHHHHHHH
T ss_pred ECCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCH-------HCCHHHHHHHHHH
T ss_conf 698827778999999975680599830588730441889999987187369887346601-------1026675445554
Q ss_pred HHHH-----------------------------------------------------HHH---HHHHHHHHHHHHCC--C
Q ss_conf 9999-----------------------------------------------------998---98999999999817--8
Q 000735 943 DVQN-----------------------------------------------------EFN---MRLVQIVTQLKEQG--M 964 (1324)
Q Consensus 943 ~i~~-----------------------------------------------------ef~---~~i~~I~~~l~~~G--l 964 (1324)
.+.. .+. ..+......+...+ +
T Consensus 179 ~l~~~~~p~~~Pig~~~~f~g~vdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 258 (548)
T 3vqt_A 179 HLQIECAPMTWPIGMGSSFKGTYDLLHKQLHLFSATHGGRIQSGIVIHGADDPQLDEYLGDQAEQLRMDLALLEEAGTPF 258 (548)
T ss_dssp HHTSEEEESEEEESCGGGCCEEEETTTTEEEECC-------CCCEECCSTTCTHHHHHHGGGHHHHHHHHHHHHHHCCCC
T ss_pred HCCCCEEEEEEEEECCCCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
T ss_conf 23882476772251588533057653134321042337864323232235438899988888887666898875405736
Q ss_pred CHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHH------HCCCCCCEEEEEEEEE---CCCEEEEE
Q ss_conf 31333112478984039947876689901589999999778687542------0145451169999998---08615999
Q 000735 965 NTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKL------TFRNELQCTVLEVKVI---EGHGTTID 1035 (1324)
Q Consensus 965 ~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~L~~l~~~~l~e~l------~~~~~~~~~VlEvk~i---~G~G~vi~ 1035 (1324)
..+.+. -|..+|+++.||+++.||..||+.++.+++.+..... ....++.+.|+.+... +..|.+..
T Consensus 259 ~~e~~~----~g~~~PV~~gSA~~~~Gv~~LLd~iv~~~PsP~~~~~~~~~~~~~~~p~~a~vfKi~~~~~~~~~Grla~ 334 (548)
T 3vqt_A 259 DEERYL----KGELTPVFFGSAINNFGVREMLDMFVEFAPGPQPRPAATRVVEPGEEAFTGVVFKIQANMDKAHRDRMAF 334 (548)
T ss_dssp CHHHHH----TTSEEEEEECBGGGTBSHHHHHHHHHHHSCCSCCEEBSSSEECTTCSSCEEEEEEEECC-------CEEE
T ss_pred HHHHHH----HCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCEEEE
T ss_conf 499998----2983102614545585899999999974799877543234558997674379999970577677876999
Q ss_pred EEEEEEEECCCCEEEECCCCCCEEEEEEECCCCCCCCEEEECCEEECC----CCCC-CCCCEEEECCCCCCCCCCCCEE
Q ss_conf 999810652898898805689605776530389887200102210000----0001-2246056015653234798439
Q 000735 1036 VVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHH----KQIK-AAQGIKITAQGLEHAIAGTGLY 1109 (1324)
Q Consensus 1036 ~iV~~G~Lr~GD~IVv~g~~g~~v~~Ir~Ll~p~p~~e~rVk~~~~~~----kev~-aa~gvki~~~gL~~a~aG~~~~ 1109 (1324)
++|++|+|+.|+.+.....+. ..+|..++..+ ..+. +.+|..+++.||.....|+++.
T Consensus 335 ~RV~sG~l~~g~~v~~~~~~~----------------~~rv~~l~~~~g~~~~~v~~a~AGdIvai~gl~~~~~GDTl~ 397 (548)
T 3vqt_A 335 LRICSGTFTRGMRLKHHRTGK----------------DVTVANATIFMAQDRTGVEEAFPGDIIGIPNHGTIKIGDTFT 397 (548)
T ss_dssp EEEEESCEETTCEEEETTTTE----------------EEECTTCEECCCSSCCSSCEECTTCEEEEECSSCCCTTCEEE
T ss_pred EEEECCEECCCCEEEEECCCC----------------CCCCCHHHHHCCCCCCCCCEEECCCEEEECCCCCCCCCCEEC
T ss_conf 998535445899898412333----------------000011334205666436788469899856876676378816
No 5
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=1.00 E-value=1 Score=282.66 Aligned_cols=260 Identities=22% Similarity=0.346 Sum_probs=194.0
Q ss_pred CCCCCCCCCCCEEEEECCCCCCHHHHHHHHHCCC-------CCCCCCCCEEEEEEEEEECCCCCCCHHHHCCCCCCCCCC
Q ss_conf 9754347999799999089998789999998396-------435555750365203671133200001110134345679
Q 000735 785 PKQAEENLRSPICCIMGHVDTGKTKLLDCIRGTN-------VQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVP 857 (1324)
Q Consensus 785 ~~~~~~~~R~piV~IlGhvdsGKTTLLd~L~~t~-------v~~geagGITq~iga~~~~~e~i~~~~~~i~~~~~~~~~ 857 (1324)
+.+....+++++|+|+||+|||||||+++|++.. ......+|||++++..++.+.. .
T Consensus 10 ~~~~~~~m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~----------------~ 73 (482)
T 1wb1_A 10 EGRPHMDFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN----------------Y 73 (482)
T ss_dssp ---CCCCCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT----------------E
T ss_pred CCCHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEECCEEEEEECC----------------E
T ss_conf 862443389889999999998299999999788764112555223357617830569999899----------------7
Q ss_pred CEEEEECCCCCCHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHH
Q ss_conf 79999199984114566402676650178623346886778999999870499379984013443576547881289999
Q 000735 858 GLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAI 937 (1324)
Q Consensus 858 ~i~iIDTPGHe~F~~lr~rg~s~aDiaILVVDa~~Gv~~QT~E~l~lL~~~~iPiIVviNKiD~~~~w~~~~~adi~~~L 937 (1324)
.++|||||||++|..++.++++.+|++|||||+++|+++||++++.++...++|+||++||||+.. ...
T Consensus 74 ~i~iiDtPGh~~~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~ip~IvviNK~Dl~~-------~~~---- 142 (482)
T 1wb1_A 74 RITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAG-------TEE---- 142 (482)
T ss_dssp EEEECCCSSHHHHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCBCEEEECTTSSC-------HHH----
T ss_pred EEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCC-------CHH----
T ss_conf 999998988699999999888449999999956878657789999999984998899997877322-------015----
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 9875999999989899999999981-783133311247898403994787668990158999999977868754201454
Q 000735 938 KQQNTDVQNEFNMRLVQIVTQLKEQ-GMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNE 1016 (1324)
Q Consensus 938 ~~q~~~i~~ef~~~i~~I~~~l~~~-Gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI~eLl~~L~~l~~~~l~e~l~~~~~ 1016 (1324)
+......+...+... ++ ..++++++||++|+||.+|+.+|..+++.+... .....+
T Consensus 143 ----------~~~~~~~l~~~l~~~~~~------------~~~~ii~vSA~~g~gI~~L~~~L~~~i~~~~~~-~~~~~~ 199 (482)
T 1wb1_A 143 ----------IKRTEMIMKSILQSTHNL------------KNSSIIPISAKTGFGVDELKNLIITTLNNAEII-RNTESY 199 (482)
T ss_dssp ----------HHHHHHHHHHHHHHSSSG------------GGCCEEECCTTTCTTHHHHHHHHHHHHHHSCCC-CCSSSC
T ss_pred ----------HHHHHHHHHHHHHHHCCC------------CCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCC-CCCCCC
T ss_conf ----------899999999998641355------------563199987767988799999998761276445-652125
Q ss_pred CCEEEEEEEEECCCEEEEEEEEEEEEECCCCEEEECCCCCCEEEEEEECCCCCCCCEEEECCEEECCCCCC---CCCCEE
Q ss_conf 51169999998086159999998106528988988056896057765303898872001022100000001---224605
Q 000735 1017 LQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIK---AAQGIK 1093 (1324)
Q Consensus 1017 ~~~~VlEvk~i~G~G~vi~~iV~~G~Lr~GD~IVv~g~~g~~v~~Ir~Ll~p~p~~e~rVk~~~~~~kev~---aa~gvk 1093 (1324)
+++.|..++.++|.|+++++.|.+|+|+.||.+++++.+ ...+|+++++++..+. +++.+.
T Consensus 200 ~~~~v~~v~~~~g~G~v~~g~v~~G~l~~gd~v~~~p~~----------------~~~~V~~i~~~~~~v~~a~~G~~v~ 263 (482)
T 1wb1_A 200 FKMPLDHAFPIKGAGTVVTGTINKGIVKVGDELKVLPIN----------------MSTKVRSIQYFKESVMEAKAGDRVG 263 (482)
T ss_dssp CBCBCSCEECCSSCCCEECCCCCBSCCCSSEEECCTTTC----------------CCEEECCBCGGGSCBCCCCSSCCCC
T ss_pred CCCCCEEEEEECCCCEEEEEEEEEEEEEECCEEEECCCC----------------CEEEEEEEEECCEEEEEECCCCEEE
T ss_conf 553111589964883499999987699609999999999----------------6899929999990850725999899
Q ss_pred EECCCCCCCCCCCCEEE
Q ss_conf 60156532347984399
Q 000735 1094 ITAQGLEHAIAGTGLYV 1110 (1324)
Q Consensus 1094 i~~~gL~~a~aG~~~~v 1110 (1324)
+.+.|++......+.++
T Consensus 264 ~~l~~~~~~~i~~Gdvl 280 (482)
T 1wb1_A 264 MAIQGVDAKQIYRGXIL 280 (482)
T ss_dssp EECSSCCSSCCCSSCBC
T ss_pred EEECCCCHHHCCCCCEE
T ss_conf 99669978631565267
No 6
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=1.00 E-value=1 Score=281.90 Aligned_cols=257 Identities=24% Similarity=0.294 Sum_probs=182.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCC-------------------------------CCCCCCEEEEEEEEEECCCCC
Q ss_conf 9979999908999878999999839643-------------------------------555575036520367113320
Q 000735 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQ-------------------------------EGEAGGITQQIGATYFPAENI 841 (1324)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~t~v~-------------------------------~geagGITq~iga~~~~~e~i 841 (1324)
..++|+|+||+|||||||+++|++.... ....+|||++++...+.+
T Consensus 176 ~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~--- 252 (592)
T 3mca_A 176 PVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFES--- 252 (592)
T ss_dssp CEEEEEEECCSSSTHHHHHHHHHHHHHCC---------------------------------------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHCCCHHHHCCCEEEEEEEEEEEE---
T ss_conf 85189998589998899999999871885467889887767651875201344422534441388169753899971---
Q ss_pred CCHHHHCCCCCCCCCCCEEEEECCCCCCHHHHHHHCCCCCCCEEEEECCCCCC-------CHHHHHHHHHHHHCCCC-EE
Q ss_conf 00011101343456797999919998411456640267665017862334688-------67789999998704993-79
Q 000735 842 RERTRELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGL-------EPQTIESLNLLKMRNTE-FI 913 (1324)
Q Consensus 842 ~~~~~~i~~~~~~~~~~i~iIDTPGHe~F~~lr~rg~s~aDiaILVVDa~~Gv-------~~QT~E~l~lL~~~~iP-iI 913 (1324)
....|+|||||||..|..++.++++.+|++|||||+++|. ++||.+++.++...++| +|
T Consensus 253 -------------~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~lgip~iI 319 (592)
T 3mca_A 253 -------------DKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIV 319 (592)
T ss_dssp -------------------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHSSCCCEE
T ss_pred -------------CCEEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEE
T ss_conf -------------9948999989982888999998886589999999788775222446555799999999983998499
Q ss_pred EEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCH
Q ss_conf 9840134435765478812899999875999999989899999999-981783133311247898403994787668990
Q 000735 914 VALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQL-KEQGMNTELYYKNKDRGETFNIVPTSAISGEGI 992 (1324)
Q Consensus 914 VviNKiD~~~~w~~~~~adi~~~L~~q~~~i~~ef~~~i~~I~~~l-~~~Gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI 992 (1324)
||+||||++. |. .. .+......+...+ ...|+.. ..+++||+||++|.||
T Consensus 320 vviNKiDl~~-~~----~~--------------~~~~i~~el~~~l~~~~g~~~----------~~~~ii~iSA~~G~gI 370 (592)
T 3mca_A 320 VSVNKLDLMS-WS----ED--------------RFQEIKNIVSDFLIKMVGFKT----------SNVHFVPISAISGTNL 370 (592)
T ss_dssp EEEECGGGGT-TC----HH--------------HHHHHHHHHHHHHTTTSCCCG----------GGEEEEEECSSSCSSS
T ss_pred EEEECCCCCC-CC----HH--------------HHHHHHHHHHHHHHHHHCCCC----------CCEEEEEEECCCCCCC
T ss_conf 9996346655-43----78--------------999999999999987508886----------6248999754557543
Q ss_pred H--------------HHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCEEEEEEEEEEEEECCCCEEEECCCCCCE
Q ss_conf 1--------------58999999977868754201454511699999980861599999981065289889880568960
Q 000735 993 P--------------DLLLLLVQWTQKTMVEKLTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPI 1058 (1324)
Q Consensus 993 ~--------------eLl~~L~~l~~~~l~e~l~~~~~~~~~VlEvk~i~G~G~vi~~iV~~G~Lr~GD~IVv~g~~g~~ 1058 (1324)
. .|+..|..+.+ .......++++.|.+++.+ |.|++++|+|.+|+|+.||.|+++|.+
T Consensus 371 ~e~~~~~~~~w~~g~~Lle~l~~~~p----p~~~~~~p~r~~v~~v~~~-~~g~v~~G~v~~G~l~~Gd~v~i~p~~--- 442 (592)
T 3mca_A 371 IQKDSSDLYKWYKGPTLLSALDQLVP----PEKPYRKPLRLSIDDVYRS-PRSVTVTGRVEAGNVQVNQVLYDVSSQ--- 442 (592)
T ss_dssp CSCCCCGGGGTCCSCCHHHHHHTSCC----CSCTTTSCCEEEEEEEEEE-TTEEEEEEEEEESEEETTCEEEETTTT---
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHCC----CCCCCCCCCHHEEEEEEEC-CCEEEEEEEEEEEEECCCCEEEECCCC---
T ss_conf 34543221223540789999975206----5555555600124689955-982999999941367369889991699---
Q ss_pred EEEEEECCCCCCCCEEEECCEEECCCCCC-C---CCCEEEECCCCCCCCCCCCEEEECCCC
Q ss_conf 57765303898872001022100000001-2---246056015653234798439929986
Q 000735 1059 VTTIRALLTPHPMKELRVKGTYLHHKQIK-A---AQGIKITAQGLEHAIAGTGLYVVGPDD 1115 (1324)
Q Consensus 1059 v~~Ir~Ll~p~p~~e~rVk~~~~~~kev~-a---a~gvki~~~gL~~a~aG~~~~v~~~~~ 1115 (1324)
...+|+++++|+..+. . +..+.+.+.|+....+..+.+++.++.
T Consensus 443 -------------~~~~V~~i~~~~~~~~~~a~aG~~v~~~l~~i~~~~i~rG~vl~~~~~ 490 (592)
T 3mca_A 443 -------------EDAYVKNVIRNSDPSSTWAVAGDTVTLQLADIEVNQLRPGDILSNYEN 490 (592)
T ss_dssp -------------EEEEEEEEECSSSCSCCEEETTCEEEEEESSSCGGGCCTTCEEECSSS
T ss_pred -------------CEEEEEEEEECCCCCCCEECCCCEEEEEECCCCCCCCCEEEEECCCCC
T ss_conf -------------468999999758457634068988999972530023313788526999
No 7
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=1.00 E-value=1 Score=277.43 Aligned_cols=262 Identities=24% Similarity=0.386 Sum_probs=189.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC-------------------------------CCCCCCCEEEEEEEEEECCCCC
Q ss_conf 997999990899987899999983964-------------------------------3555575036520367113320
Q 000735 793 RSPICCIMGHVDTGKTKLLDCIRGTNV-------------------------------QEGEAGGITQQIGATYFPAENI 841 (1324)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~t~v-------------------------------~~geagGITq~iga~~~~~e~i 841 (1324)
..++|+|+||+|+|||||+++|++... +....+|||++++..++.+..
T Consensus 16 ~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~- 94 (439)
T 3j2k_7 16 EHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEK- 94 (439)
T ss_pred CEEEEEEEECCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHCCCHHHHHCCCEEEEEEEEEECCC-
T ss_conf 6239999938999989999999987399766788888888875066622245543365567606943987589996198-
Q ss_pred CCHHHHCCCCCCCCCCCEEEEECCCCCCHHHHHHHCCCCCCCEEEEECCCCCCC-------HHHHHHHHHHHHCCCC-EE
Q ss_conf 000111013434567979999199984114566402676650178623346886-------7789999998704993-79
Q 000735 842 RERTRELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLE-------PQTIESLNLLKMRNTE-FI 913 (1324)
Q Consensus 842 ~~~~~~i~~~~~~~~~~i~iIDTPGHe~F~~lr~rg~s~aDiaILVVDa~~Gv~-------~QT~E~l~lL~~~~iP-iI 913 (1324)
..|+|||||||++|..++.++++.+|++|||||+.+|++ +||++++.++...++| +|
T Consensus 95 ---------------~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iI 159 (439)
T 3j2k_7 95 ---------------KHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLI 159 (439)
T ss_pred ---------------EEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEE
T ss_conf ---------------57999989970788999985485689999999899784114567774389999999984998489
Q ss_pred EEEECCCCCC-CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCH
Q ss_conf 9840134435-765478812899999875999999989899999999981783133311247898403994787668990
Q 000735 914 VALNKVDRLY-GWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGI 992 (1324)
Q Consensus 914 VviNKiD~~~-~w~~~~~adi~~~L~~q~~~i~~ef~~~i~~I~~~l~~~Gl~~e~~~~~~~~g~~v~iVpvSA~tGeGI 992 (1324)
|++||||+.. .|. ...+......+...+...|++.. ..++++|+||++|+||
T Consensus 160 vviNK~Dl~~~~~~------------------~~~~~~i~~~~~~~l~~~g~~~~---------~~~~~i~iSA~~G~ni 212 (439)
T 3j2k_7 160 VLINKMDDPTVNWS------------------NERYEECKEKLVPFLKKVGFNPK---------KDIHFMPCSGLTGANL 212 (439)
T ss_pred EEEECCCCCCCCHH------------------HHHHHHHHHHHHHHHHHHCCCCC---------CCEEEEEEECCCCCCC
T ss_conf 97534787662257------------------99999999999999987423545---------7705999643577553
Q ss_pred HHHHHHHHHHHHHHHHHHH--------HCCCCCCEEEEEEEEECCCEEEEEEEEEEEEECCCCEEEECCCCCCEEEEEEE
Q ss_conf 1589999999778687542--------01454511699999980861599999981065289889880568960577653
Q 000735 993 PDLLLLLVQWTQKTMVEKL--------TFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRA 1064 (1324)
Q Consensus 993 ~eLl~~L~~l~~~~l~e~l--------~~~~~~~~~VlEvk~i~G~G~vi~~iV~~G~Lr~GD~IVv~g~~g~~v~~Ir~ 1064 (1324)
.+++..+.|+....+.+.+ ....++++.|.+++ .|.|+++.|+|.+|+|+.||.|++++++
T Consensus 213 ~~l~~~~~w~~g~~L~~~l~~i~~~~~~~~~p~r~~v~~~~--~~~G~v~~G~v~~G~l~~Gd~v~~~p~~--------- 281 (439)
T 3j2k_7 213 KEQSDFCPWYIGLPFIPYLDNLPNFNRSVDGPIRLPIVDKY--KDMGTVVLGKLESGSIFKGQQLVMMPNK--------- 281 (439)
T ss_pred CCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEE--CCCCEEEEEEEEEEEEECCCEEEECCCC---------
T ss_conf 11233454467267999997478976677787289999897--4997599999973479549999973589---------
Q ss_pred CCCCCCCCEEEECCEEECCCCCCCC---CCEEEECCCCCCCCCCCCEEEECCCC
Q ss_conf 0389887200102210000000122---46056015653234798439929986
Q 000735 1065 LLTPHPMKELRVKGTYLHHKQIKAA---QGIKITAQGLEHAIAGTGLYVVGPDD 1115 (1324)
Q Consensus 1065 Ll~p~p~~e~rVk~~~~~~kev~aa---~gvki~~~gL~~a~aG~~~~v~~~~~ 1115 (1324)
...+|+++++|+..+..| +.+.+.+.|++.....++.+++.++.
T Consensus 282 -------~~~~V~~i~~~~~~~~~a~aG~~v~~~l~gi~~~~i~rG~vl~~~~~ 328 (439)
T 3j2k_7 282 -------HNVEVLGILSDDTETDFVAPGENLKIRLKGIEEEEILPGFILCDPSN 328 (439)
T ss_pred -------CEEEEEEEEECCEECCEECCCCCCEEEEECCCHHHCCCCEEECCCCC
T ss_conf -------45788999778807377328985468992355643487087327999
No 8
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=1.00 E-value=1 Score=275.63 Aligned_cols=259 Identities=24% Similarity=0.341 Sum_probs=182.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCC----------------CCCCCCEEEEEEEEEECCCCCCCHHHHCCCCCCCCC
Q ss_conf 9979999908999878999999839643----------------555575036520367113320000111013434567
Q 000735 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQ----------------EGEAGGITQQIGATYFPAENIRERTRELKANATLKV 856 (1324)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~t~v~----------------~geagGITq~iga~~~~~e~i~~~~~~i~~~~~~~~ 856 (1324)
..++|+|+||+|||||||+++|++.... .....|||+.+....+.. ..
T Consensus 295 ~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~----------------~~ 358 (1289)
T 3avx_A 295 PHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDT----------------PT 358 (1289)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEEC----------------SS
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECC----------------CC
T ss_conf 70489998289988999999998640235643233322356642132375368888999747----------------98
Q ss_pred CCEEEEECCCCCCHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCC-EEEEEECCCCCCCCCCCCCCHHHH
Q ss_conf 9799991999841145664026766501786233468867789999998704993-799840134435765478812899
Q 000735 857 PGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTE-FIVALNKVDRLYGWKTCRNAPIVK 935 (1324)
Q Consensus 857 ~~i~iIDTPGHe~F~~lr~rg~s~aDiaILVVDa~~Gv~~QT~E~l~lL~~~~iP-iIVviNKiD~~~~w~~~~~adi~~ 935 (1324)
..|+|||||||++|..++.++++.+|++|||||+++|+++||.++|.++...++| +||++||||+.. ......
T Consensus 359 ~kI~IIDTPGHedF~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~lgIP~IIVVINKiDLv~------d~e~le 432 (1289)
T 3avx_A 359 RHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVD------DEELLE 432 (1289)
T ss_dssp CEEEEEECCCHHHHHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHHTCSCEEEEEECCTTCC------CHHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCC------CHHHHH
T ss_conf 79999989883999999999884399999998187667588999999998759986999985145421------034689
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCC--------CCHHHHHHHHHHHHHHHH
Q ss_conf 999875999999989899999999981783133311247898403994787668--------990158999999977868
Q 000735 936 AIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISG--------EGIPDLLLLLVQWTQKTM 1007 (1324)
Q Consensus 936 ~L~~q~~~i~~ef~~~i~~I~~~l~~~Gl~~e~~~~~~~~g~~v~iVpvSA~tG--------eGI~eLl~~L~~l~~~~l 1007 (1324)
.....+...+...|+. +..++++++||++| .||.+|+..|..+++.+.
T Consensus 433 --------------~i~eEi~elLk~~G~~----------~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip~P~ 488 (1289)
T 3avx_A 433 --------------LVEMEVRELLSQYDFP----------GDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPEPE 488 (1289)
T ss_dssp --------------HHHHHHHHHHHHTTSC----------TTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSCCCC
T ss_pred --------------HHHHHHHHHHHHCCCC----------CCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCC
T ss_conf --------------9999999999851346----------6631599987224777786300363466767765368875
Q ss_pred HHHHHCCCCCCEEEEEEEEECCCEEEEEEEEEEEEECCCCEEEECCCCCCEEEEEEECCCCCCCCEEEECCEEECCCCCC
Q ss_conf 75420145451169999998086159999998106528988988056896057765303898872001022100000001
Q 000735 1008 VEKLTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIK 1087 (1324)
Q Consensus 1008 ~e~l~~~~~~~~~VlEvk~i~G~G~vi~~iV~~G~Lr~GD~IVv~g~~g~~v~~Ir~Ll~p~p~~e~rVk~~~~~~kev~ 1087 (1324)
.....++++.|..++.++|+|++++|+|.+|+|+.||.|+++|++++...+ |+++++|+..+.
T Consensus 489 ---r~~d~Pfr~pId~Vf~i~G~GtVvtGrV~sGtLkvGD~V~I~ps~~~~~~k--------------VksI~~~~~~v~ 551 (1289)
T 3avx_A 489 ---RAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIKETQKST--------------CTGVEMFRKLLD 551 (1289)
T ss_dssp ---CGGGSCCEEECCEEEEETTTEEEEEEECCBSEEETTCEEEEESSSSCEEEE--------------EEEEECSSCEES
T ss_pred ---CCCCCCEEEECCCCCCCCCCCEEEEEEEECCEEECCCEEEEECCCCCEEEE--------------EEEEEECCCEEE
T ss_conf ---442121033000000125886799999966389619889993689963699--------------978863692453
Q ss_pred ---CCCCEEEECCCCCCCCCCCCEEEECCC
Q ss_conf ---224605601565323479843992998
Q 000735 1088 ---AAQGIKITAQGLEHAIAGTGLYVVGPD 1114 (1324)
Q Consensus 1088 ---aa~gvki~~~gL~~a~aG~~~~v~~~~ 1114 (1324)
++..+.+.+.|+.......+.+++.++
T Consensus 552 eA~AGd~Vgl~L~GI~~~dI~RGdVL~~~~ 581 (1289)
T 3avx_A 552 EGRAGENVGVLLRGIKREEIERGQVLAKPG 581 (1289)
T ss_dssp EEETTCEEEEEESSCCGGGCCTTCEEESTT
T ss_pred EEECCCCCEEEEEECCHHCCCCCCEEECCC
T ss_conf 872687423676401051188625896599
No 9
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=1.00 E-value=1 Score=274.96 Aligned_cols=251 Identities=20% Similarity=0.220 Sum_probs=172.4
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECC-CCCCCHHHHCCC---CCCCCCCCEEEEECCC
Q ss_conf 799979999908999878999999839643555575036520367113-320000111013---4345679799991999
Q 000735 791 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPA-ENIRERTRELKA---NATLKVPGLLVIDTPG 866 (1324)
Q Consensus 791 ~~R~piV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~~~-e~i~~~~~~i~~---~~~~~~~~i~iIDTPG 866 (1324)
.+|| |+|+||+|||||||+++|+...-.....+.+. -+.++..+ ..-++|.++++. ...|+.+.||||||||
T Consensus 1 kIRN--i~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~--~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPG 76 (638)
T 3j25_A 1 KIIN--IGVLAHVDAGKTTLTESLLYNSGAITELGSVD--KGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPG 76 (638)
T ss_dssp CCCC--CEEECCSTTSSHHHHHHHHHHHTCCSSCSSCC--CSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCC
T ss_pred CEEE--EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCC--CCCCCCCCCHHHHHCCCCEEEEEEEEEECCEEEEEEECCC
T ss_conf 9569--99994899998999999999749975153212--6874568848898679768952599998998999997988
Q ss_pred CCCHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHH--
Q ss_conf 841145664026766501786233468867789999998704993799840134435765478812899999875999--
Q 000735 867 HESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDV-- 944 (1324)
Q Consensus 867 He~F~~lr~rg~s~aDiaILVVDa~~Gv~~QT~E~l~lL~~~~iPiIVviNKiD~~~~w~~~~~adi~~~L~~q~~~i-- 944 (1324)
|.+|+..+.|+++.||+||||||+..|+++||..+|+++..+++|+|++|||||+. .+++...+.+....+
T Consensus 77 H~DF~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~lp~i~~INKmDr~-------~a~~~~~~~~i~~~l~~ 149 (638)
T 3j25_A 77 HMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTIFFINKIDQN-------GIDLSTVYQDIKEKLSA 149 (638)
T ss_dssp SSSTHHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHHTCSCEECCEECCSS-------SCCSHHHHHHHHHTTCC
T ss_pred CHHHHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCC-------CCCHHHHHHHHHHHHCC
T ss_conf 17889999999998598999996898974789999999997599828998423545-------68999999999998678
Q ss_pred ------------------------HHHHHHHHHHHHHHHH-HCCCCHHHHHC----CCCCCCCEEEEECCCCCCCCHHHH
Q ss_conf ------------------------9999898999999999-81783133311----247898403994787668990158
Q 000735 945 ------------------------QNEFNMRLVQIVTQLK-EQGMNTELYYK----NKDRGETFNIVPTSAISGEGIPDL 995 (1324)
Q Consensus 945 ------------------------~~ef~~~i~~I~~~l~-~~Gl~~e~~~~----~~~~g~~v~iVpvSA~tGeGI~eL 995 (1324)
...+......++..+. ...+....... ....+..+|+++.||+++.||..|
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSa~~~~Gv~~L 229 (638)
T 3j25_A 150 EIVIKQKVELYPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHGSAKSNIGIDNL 229 (638)
T ss_dssp CCCCCCCCCSCGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCCCCCCSTTCCSHHHH
T ss_pred CCCCCCEEEEECCCCCCCCCHHHHHHHHHCCCHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHH
T ss_conf 73214315763342111221566644554066778765306775666778888766402452146323434258783427
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCEEEEEEEEEEEEECCCCEEEECCCC
Q ss_conf 999999977868754201454511699999980861599999981065289889880568
Q 000735 996 LLLLVQWTQKTMVEKLTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQ 1055 (1324)
Q Consensus 996 l~~L~~l~~~~l~e~l~~~~~~~~~VlEvk~i~G~G~vi~~iV~~G~Lr~GD~IVv~g~~ 1055 (1324)
|+.+..+++.+.. ....++.+.|+.+.+.++.|.+..++|++|+|+.|+.+.+....
T Consensus 230 Ld~i~~~~p~p~~---~~~~~~~~~Vfk~~~d~~~G~la~~RV~sG~l~~g~~v~~~~~~ 286 (638)
T 3j25_A 230 IEVITNKFYSSTH---RGPSELCGNVFKIEYTKKRQRLAYIRLYSGVLHLRDSVRVSEKE 286 (638)
T ss_dssp HHHHHHSCCCSGG---GSCCCCCBEEBCCCCCSTTCCCCBCCBSSBCCCSCCCSSSCCCC
T ss_pred HHHHHCCCCCCCC---CHHHHHCCEEEEEEEECCCCEEEEEEEECCCCCCCCCCCCCCCC
T ss_conf 6543203667510---00111121455544211585599999973863378744345675
No 10
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=1.00 E-value=1 Score=273.53 Aligned_cols=289 Identities=21% Similarity=0.219 Sum_probs=188.8
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHCCCC--------C----------CCCCCCEEEEEEEEEECCCCCCCHHHHCCCC
Q ss_conf 479997999990899987899999983964--------3----------5555750365203671133200001110134
Q 000735 790 ENLRSPICCIMGHVDTGKTKLLDCIRGTNV--------Q----------EGEAGGITQQIGATYFPAENIRERTRELKAN 851 (1324)
Q Consensus 790 ~~~R~piV~IlGhvdsGKTTLLd~L~~t~v--------~----------~geagGITq~iga~~~~~e~i~~~~~~i~~~ 851 (1324)
+++|| |||+||+|||||||+++|+..+- . ....+|||+...+.++.|....
T Consensus 11 ~~IRN--i~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~--------- 79 (709)
T 4fn5_A 11 NRYRN--IGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSR--------- 79 (709)
T ss_dssp GGEEE--EEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTT---------
T ss_pred HHCEE--EEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCCCCCCHHHHHHCCCEEEEEEEEEEECCCC---------
T ss_conf 87729--9999489999899999999962998757604389756798499997497297603899961676---------
Q ss_pred CCCCCCCEEEEECCCCCCHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCC
Q ss_conf 34567979999199984114566402676650178623346886778999999870499379984013443576547881
Q 000735 852 ATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNA 931 (1324)
Q Consensus 852 ~~~~~~~i~iIDTPGHe~F~~lr~rg~s~aDiaILVVDa~~Gv~~QT~E~l~lL~~~~iPiIVviNKiD~~~~w~~~~~a 931 (1324)
..++.+.|||||||||.+|+..+.++++.||+||||||+..|+++||...|+++...++|+|++|||||+. .+
T Consensus 80 ~~~~~~~iNlIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~~lp~i~~iNKiDr~-------~a 152 (709)
T 4fn5_A 80 GQYDNYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKYGVPRIVYVNKMDRQ-------GA 152 (709)
T ss_dssp SCSCCEEEEEECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHHTCCEEEEEECSSST-------TC
T ss_pred CCCCCEEEEEEECCCCCCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCC-------CC
T ss_conf 77887799999398976408999999987485899997998975638999999997599869997166666-------76
Q ss_pred HHHHHHHHHHHHHH----------------------------------------------------HHHHHH--------
Q ss_conf 28999998759999----------------------------------------------------999898--------
Q 000735 932 PIVKAIKQQNTDVQ----------------------------------------------------NEFNMR-------- 951 (1324)
Q Consensus 932 di~~~L~~q~~~i~----------------------------------------------------~ef~~~-------- 951 (1324)
++...+.+....+. ..+...
T Consensus 153 ~~~~~~~ei~~~l~~~~~~~~~pi~~~~~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 232 (709)
T 4fn5_A 153 NFLRVVEQIKKRLGHTPVPVQLAIGAEENFVGQVDLIKMKAIYWNDDDKGMTYREEEIPAELKDLAEEWRSSMVEAAAEA 232 (709)
T ss_dssp CHHHHHHHHHHHHCSCEEESEEEESSSTTCCEEEETTTTEEEEEEC--CCCEEEECCCCHHHHHHHHHHHHHHHHHHHTS
T ss_pred CHHHHHHHHHHHCCCCEEEEECCCCCHHCCCEEEEEEEEEEEEEECCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf 68999877622045622555435573001553898751067884044578631013463788888999988789887744
Q ss_pred HHHHHHHHHHCC-CCHHHH----HCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHH-----------------
Q ss_conf 999999999817-831333----1124789840399478766899015899999997786875-----------------
Q 000735 952 LVQIVTQLKEQG-MNTELY----YKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVE----------------- 1009 (1324)
Q Consensus 952 i~~I~~~l~~~G-l~~e~~----~~~~~~g~~v~iVpvSA~tGeGI~eLl~~L~~l~~~~l~e----------------- 1009 (1324)
...+...+.+.+ +..... +.....+..+|++..||.++.|++.||+.++.+++.+..-
T Consensus 233 d~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~pv~~gsa~~~~gv~~lLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~ 312 (709)
T 4fn5_A 233 NEELMNKYLEEGELSEAEIKEGLRLRTLACEIVPAVCGSSFKNKGVPLVLDAVIDYLPAPTEIPAIKGVSPDDETVEDER 312 (709)
T ss_dssp SHHHHHHHHHHSCCCHHHHHHHHHHHHHTTSCEEEEECBTTTTBTHHHHHHHHHHHSCCTTSSCCEECBCCC-CCSCCEE
T ss_pred CHHHHHHHHHCCCCCHHHHHHHHHHHHHHCEEEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 49999998744776277777788886540024550440044677668888878860799754443013377654322223
Q ss_pred HHHCCCCCCEEEEEEEEECCCEEEEEEEEEEEEECCCCEEEECCCCCC-EEEEEEECCCCCCCCEEEECCEEECCCCCC-
Q ss_conf 420145451169999998086159999998106528988988056896-057765303898872001022100000001-
Q 000735 1010 KLTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGP-IVTTIRALLTPHPMKELRVKGTYLHHKQIK- 1087 (1324)
Q Consensus 1010 ~l~~~~~~~~~VlEvk~i~G~G~vi~~iV~~G~Lr~GD~IVv~g~~g~-~v~~Ir~Ll~p~p~~e~rVk~~~~~~kev~- 1087 (1324)
..+...|+.+.|+.+.+.+..|.+..++|++|+|+.|+.+.....+.. .+.++..+. ... ...+.
T Consensus 313 ~~d~~~pl~~~VfK~~~d~~~G~la~~RV~sGtl~~G~~v~~~~~~~~~~v~~l~~~~---g~~----------~~~v~~ 379 (709)
T 4fn5_A 313 HADDNEPFSSLAFKIATDPFVGTLTFARVYSGVLSSGDSVLNSVKGKKERVGRMVQMH---ANQ----------REEIKE 379 (709)
T ss_dssp CSCTTSCCEEEEEECCCBTTTBCCCEEEEEESCEETTCBCBCTTTCCCCBCCCEECCC---SSC----------CCEESE
T ss_pred CCCCCCCCEEEEEEEECCCCCCCEEEEECCCCCCCCCCEEEEECCCCEEEECCEEEEE---CCE----------EEEEEE
T ss_conf 5786676157999950356777057773258988889999972399577503406763---010----------148206
Q ss_pred CCCCEEEECCCCCCCCCCCCEE
Q ss_conf 2246056015653234798439
Q 000735 1088 AAQGIKITAQGLEHAIAGTGLY 1109 (1324)
Q Consensus 1088 aa~gvki~~~gL~~a~aG~~~~ 1109 (1324)
+..|..+++.||.....|+++.
T Consensus 380 ~~aGdIv~i~Gl~~~~~gdTl~ 401 (709)
T 4fn5_A 380 VRAGDIAALIGMKDVTTGDTLC 401 (709)
T ss_dssp ECTTCEEEECSCSSCCTTCEEE
T ss_pred ECCCCEEEECCCCCCCCCCEEC
T ss_conf 6378701463887676388756
Done!