Query 000736
Match_columns 1323
No_of_seqs 451 out of 1732
Neff 7.1
Searched_HMMs 29240
Date Tue Mar 26 17:10:28 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000736.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_506-510//hhsearch_pdb/000736hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mkq_A Coatomer beta'-subunit; 1.0 1 1 389.2 75.1 703 22-1107 15-779 (814)
2 1nr0_A Actin interacting prote 1.0 1 1 331.4 58.6 241 22-309 20-273 (611)
3 2ymu_A WD-40 repeat protein; u 1.0 1 1 318.4 64.9 437 22-552 18-496 (577)
4 3mkq_A Coatomer beta'-subunit; 1.0 1 1 313.0 65.4 685 22-1072 57-805 (814)
5 2ymu_A WD-40 repeat protein; u 1.0 1 1 309.7 56.0 198 67-304 12-209 (577)
6 1nr0_A Actin interacting prote 1.0 1 1 307.4 52.5 200 76-306 19-221 (611)
7 3sfz_A APAF-1, apoptotic pepti 1.0 1 1 302.9 56.3 276 22-348 617-910 (1249)
8 3sfz_A APAF-1, apoptotic pepti 1.0 1 1 295.9 59.4 234 76-345 616-865 (1249)
9 2oaj_A Protein SNI1; WD40 repe 1.0 1 1 287.7 56.8 463 22-552 19-659 (902)
10 1pgu_A Actin interacting prote 1.0 1 1 283.9 52.2 386 1-478 1-434 (615)
No 1
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=1.00 E-value=1 Score=389.19 Aligned_cols=703 Identities=13% Similarity=0.095 Sum_probs=423.6
Q ss_pred CEEEEEEECCCCEEEEEECCCCEEEEECCCCCCCCCCEEECCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEECCCCEEE
Q ss_conf 21579662589899999379728998224433433311202222222235799997899999039998999968995999
Q 000736 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1323)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~V~~i~~spd~~~La~as~dG~I~l 101 (1323)
.+.+++|.+++..+++++.++.|..|+. .++.. +.+ +.++ .+.|.++.|+|+++.|++++.||.|.+
T Consensus 15 ~v~~i~~sp~~~~la~~~~~g~v~iwd~--~~~~~---~~~----~~~~----~~~v~~~~~s~~~~~l~~~~~dg~i~v 81 (814)
T 3mkq_A 15 RVKGIDFHPTEPWVLTTLYSGRVEIWNY--ETQVE---VRS----IQVT----ETPVRAGKFIARKNWIIVGSDDFRIRV 81 (814)
T ss_dssp CEEEEEECSSSSEEEEEETTSEEEEEET--TTTEE---EEE----EECC----SSCEEEEEEEGGGTEEEEEETTSEEEE
T ss_pred CEEEEEECCCCCEEEEEECCCEEEEEEC--CCCCE---EEE----EECC----CCCEEEEEEECCCCEEEEEECCCEEEE
T ss_conf 5689998899998999947998999989--99916---778----7338----996889999689998999928994999
Q ss_pred EECCCCE-EEEECEECCCEEEEEECCCCCEEEEEECCCCEEEEEECCCEEEEEEECCCCCCCEECCCCCCCCCCCEEEEE
Q ss_conf 9689991-999100359599999937899699996996499994047210123203467974001476246899857899
Q 000736 102 HSVDGNA-TEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPIS 180 (1323)
Q Consensus 102 w~~~~~~-~e~vg~~~~~I~~~awSPDG~~LA~~s~d~tI~l~t~~~d~~~e~~l~~~~~~~~Vs~tqf~~~d~~v~~Is 180 (1323)
|+..++. +.....|.+.|.+++|||||..|++++.|++|.+|+..-....... +.+|...+.+++
T Consensus 82 w~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~--------------~~~~~~~v~~~~ 147 (814)
T 3mkq_A 82 FNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQT--------------FEGHEHFVMCVA 147 (814)
T ss_dssp EETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEE--------------EECCSSCEEEEE
T ss_pred EECCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEECCCCCEEEEE--------------ECCCCCCEEEEE
T ss_conf 989999587998168997899999589998999928998999989999548799--------------837998688999
Q ss_pred EEC-CCCEEEEEECCCCCCCCCCEEEEEECCCCCEEEEECCC-CCCEEEEEECC--CCCEEEEEECCCCCCCCCEEEEEE
Q ss_conf 906-88579992255445588988999979999366641567-98545899936--999699996289999999399991
Q 000736 181 WRG-DGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELK-AFMGAVLEWMP--SGANIAAVYDRKSENKCPSIVFYE 256 (1323)
Q Consensus 181 Ws~-DG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~-~g~~~slawsP--dG~lIAs~~~d~~~~~~~~V~l~e 256 (1323)
|+| ||.+|+ +++ .++.|++|+..++........+ .+.+..++|+| +|.+|++++.+ ..|.+|+
T Consensus 148 ~~p~~~~~l~-~~~------~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d------g~i~~~d 214 (814)
T 3mkq_A 148 FNPKDPSTFA-SGC------LDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDD------LTIKIWD 214 (814)
T ss_dssp EETTEEEEEE-EEE------TTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTT------SEEEEEE
T ss_pred EECCCCCEEE-EEE------CCCEEEEEECCCCCCEEEEECCCCCCEEEEEEEECCCCCEEEEEECC------CEEEEEE
T ss_conf 9769999999-994------88949999899996106983588897799999977999899999389------9799999
Q ss_pred CC-CEEEEEEEECCCCCCCEEEEEECCCCCEEEEEECCCCCCEEEEEEEECCEEEEEEEEEEECCCCEEEEECCCCCCE-
Q ss_conf 79-8058799940688775899999459872589971688774999992077567776999825983999991599927-
Q 000736 257 RN-GLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQ- 334 (1323)
Q Consensus 257 ~n-Gl~~~ef~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~VqlW~~~n~~wyLkqel~~~~~~~~~v~W~p~~~~~- 334 (1323)
.. +..... +.. +...|..++|+|||.+|++++.|+ .|++|+..++.. .+.+..+......+.|+|++...
T Consensus 215 ~~~~~~~~~--~~~-~~~~v~~~~~~~~~~~l~~~~~dg---~v~vwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~ 286 (814)
T 3mkq_A 215 YQTKSCVAT--LEG-HMSNVSFAVFHPTLPIIISGSEDG---TLKIWNSSTYKV--EKTLNVGLERSWCIATHPTGRKNY 286 (814)
T ss_dssp TTTTEEEEE--EEC-CSSCEEEEEECSSSSEEEEEETTS---CEEEEETTTCSE--EEEECCSSSSEEEEEECTTCGGGE
T ss_pred CCCCCEEEE--ECC-CCCCEEEEEECCCCCEEEEEECCC---EEEEEECCCCCE--EEEEECCCCCEEEEEECCCCCCEE
T ss_conf 999918899--847-888878999859999999990899---699998999947--778406888679999924999509
Q ss_pred EEEEECCCCEEEEEEEEEEE-------ECCCEEEEEEEC-----CEEEEEECC-CCCC----CCCCEEEEE-CCCCCEEE
Q ss_conf 99994499499999999521-------089906999919-----979994257-7679----998301210-28998899
Q 000736 335 LICWTLDGQITTYNFIWTTA-------VMENSTALVIDG-----SKILVTPLS-LSLM----PPPMYLFSL-KFPTAVTE 396 (1323)
Q Consensus 335 L~~~~~~g~~~~~~~~~~~~-------~~d~~~v~viDg-----~~i~lt~l~-~~~v----PpPm~~~~l-~~~~~V~~ 396 (1323)
+..+. ++.+.. |... .+..+......+ ..+....++ .+.+ +.......+ .+...+.+
T Consensus 287 ~~~~~-~~~~~~----~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (814)
T 3mkq_A 287 IASGF-DNGFTV----LSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQS 361 (814)
T ss_dssp EEEEE-TTEEEE----EECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSE
T ss_pred EEEEE-CCCEEE----EECCCCCCEEEECCCCCEEEECCCCCCCEEEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCCE
T ss_conf 99990-798799----9767997416777998789977636641124665304655555676201465117887657740
Q ss_pred EEEECCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEEEECCCEEEEEEECCCCCEEEEE
Q ss_conf 99922999999999988981999978998852223597124742024456683799999449849999826998702899
Q 000736 397 MAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFR 476 (1323)
Q Consensus 397 VaFspdg~~~~LAs~s~Dg~I~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~~~~~~~~~ 476 (1323)
++|+|+| +.+++++ ||.+.+|+....... +.+.+..++|+|++.++|++..+ ..+.+|
T Consensus 362 ~~~spdg--~~la~~~-~~~~~i~~~~~~~~~-----------------~~~~i~~~~~spdg~~la~~~~~--g~v~l~ 419 (814)
T 3mkq_A 362 LAHSPNG--RFVTVVG-DGEYVIYTALAWRNK-----------------AFGKCQDFVWGPDSNSYALIDET--GQIKYY 419 (814)
T ss_dssp EEECTTS--SEEEEEE-TTEEEEEETTTTEEE-----------------EEEECSEEEECTTSSCEEEECTT--CCEEEE
T ss_pred EEECCCC--CEEEEEC-CCEEEEEECCCCCCC-----------------CCCCEEEEEEECCCCEEEEEECC--CCEEEE
T ss_conf 6899999--9899942-988999987454456-----------------79954799994799859999689--839999
Q ss_pred EEECCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEECCCCC---CEEEEEEECCEEEEEECC
Q ss_conf 83126686444112444421145552342224553203431014577089981078897---569999518759999254
Q 000736 477 GATLNEDGLLGFYAQEIELACSEDHVQGLLTCAGWHAKVSTQIPLEGLVIAIAPNNAKK---YSAFLQFHGGKISEYMSR 553 (1323)
Q Consensus 477 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~---~~~~~q~~dG~v~~~~~~ 553 (1323)
..- .+ ..+.+..+.++| ++ ..++....+|+|..|+..
T Consensus 420 ~~~-~~--------------------------------------~~~~v~~~~~s~-dg~~~~~l~~~~~d~~v~~~d~~ 459 (814)
T 3mkq_A 420 KNF-KE--------------------------------------VTSWSVPMHSAI-DRLFSGALLGVKSDGFVYFFDWD 459 (814)
T ss_dssp ETT-EE--------------------------------------CTTCCCCCSSCC-CEEECSSSEEEEETTEEEEECTT
T ss_pred ECC-CC--------------------------------------CCCEEECCCCCC-CCEECCEEEEEECCCEEEEEECC
T ss_conf 777-77--------------------------------------524397378675-52365469999669989999987
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEEC----CCCCEE-E--C--------------------C---
Q ss_conf 45568887788777898888236997237999742699974----897246-4--8--------------------9---
Q 000736 554 VGLTGGALTHDDASFPSSCPWMNVVSVGTNGPLKPLLFGLD----DGGRLH-V--S--------------------G--- 603 (1323)
Q Consensus 554 ~~~~~~~~~~~~~~fp~~c~~~~~~~~~~~~~~~~~~~gL~----~~~~L~-~--~--------------------~--- 603 (1323)
.+ .....++..+. .+...++| +.++++=. .....| + | +
T Consensus 460 ~~-------~~~~~~~~~~~---~v~~s~dg--~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 527 (814)
T 3mkq_A 460 NG-------TLVRRIDVNAK---DVIWSDNG--ELVMIVNTNSNGDEASGYTLLFNKDAYLEAANNGNIDDSEGVDEAFD 527 (814)
T ss_dssp TC-------CEEEEESSCEE---EEEECTTS--SEEEEEECCCSSCSCSEEEEEECHHHHHHHHHHTCCBTTTBCTTTEE
T ss_pred CC-------CEEEEEECCCC---EEEECCCC--CEEEEEECCCCCCCCEEEEEEECHHHHHHHHHCCCCCCCCCHHHHEE
T ss_conf 69-------59999735888---79996999--99999986766677428999954688666664168762125022213
Q ss_pred --EEEECCCEEEEEECCCCCCCCEEEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf --753048135998416866631089999307819999868633222112223433346766445543333356897899
Q 000736 604 --KIVCNNCSSFSFYSKSAGQAMSHLILATKQNLLFIVDISDILHGELALKYENFTHVGNRRKEENISYINIWERGAKVI 681 (1323)
Q Consensus 604 --~~i~~~~tSf~~~~~~~~~~~~~Ll~tT~~h~l~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~R~vErGs~iV 681 (1323)
..+...+.|....++ .++|+|..+.+.++...+ ...++..+..-.++
T Consensus 528 ~~~~~~~~i~s~~w~~~-------~~i~~t~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~ 576 (814)
T 3mkq_A 528 VLYELSESITSGKWVGD-------VFIFTTATNRLNYFVGGK------------------------TYNLAHYTKEMYLL 576 (814)
T ss_dssp EEEEECSCCSEEEEETT-------EEEEECTTSEEEEEETTE------------------------EEEEEECSSCCEEE
T ss_pred EEEEECCEEEEEEEECC-------EEEEECCCCEEEEEECCE------------------------EEEEEECCCCEEEE
T ss_conf 64576427876598088-------899976887089996986------------------------68999989667999
Q ss_pred EEECCCCCEEEEEECCCCEEECCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHCCC
Q ss_conf 99579971899991887222103303239999999810239999999875142353799547777898719889864299
Q 000736 682 GVLHGDEAAVILQTNRGNLECMYPRKLVLTSIVNALIQGRFRDALVMVRRHRINFNVIVDHCGWQAFLQSASEFVRQVNN 761 (1323)
Q Consensus 682 ~~~p~~~~~vVLQmpRGNLEtI~PR~lvL~~i~~~l~~~~y~~Af~~~R~hRIdlNll~D~~~p~~Fl~~~~~Fv~qv~~ 761 (1323)
...|.. .+++++...|+...+. -+ +..+. |
T Consensus 577 ~~~~~~-~~l~~~d~~~~~~~~~-------------------------------------l~-~~~~~-----~------ 606 (814)
T 3mkq_A 577 GYLARD-NKVYLADREVHVYGYE-------------------------------------IS-LEVLE-----F------ 606 (814)
T ss_dssp EEEGGG-TEEEEECTTCCEEEEE-------------------------------------CC-HHHHH-----H------
T ss_pred EEEECC-CEEEEECCCCCEEEEE-------------------------------------EC-CHHHH-----H------
T ss_conf 998329-9999992888879999-------------------------------------89-09999-----9------
Q ss_pred CCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
Q ss_conf 64065787303577311124345433457865445689755566658872789999999998512999986135776776
Q 000736 762 LSYITEFVCAINNENITETLYKKFQFLSLPCREEFKDLPAKDFKASECNKVSSVLLAIRKALEEKVPESPSRELCILTTL 841 (1323)
Q Consensus 762 ~~~l~lFls~L~~edvt~t~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~KV~~iC~a~~~~l~~~~~~~~~~~~~ilT~~ 841 (1323)
-..+.+.| .. .|....+..
T Consensus 607 -------~~~~~~~~-----------------------------------~~---~a~~~~l~~---------------- 625 (814)
T 3mkq_A 607 -------QTLTLRGE-----------------------------------IE---EAIENVLPN---------------- 625 (814)
T ss_dssp -------HHHHHTTC-----------------------------------HH---HHHHHTGGG----------------
T ss_pred -------HHHHHHCC-----------------------------------HH---HHHHHHHHC----------------
T ss_conf -------69987079-----------------------------------99---999888742----------------
Q ss_pred HCCCC-C-CHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCC
Q ss_conf 31898-0-099999999999862015999977899344999999998551578999999711594689999998317921
Q 000736 842 ARSDP-P-ALEEALERIKIIRETELLGSDEPRRMSYPSAEEALKHLLWLADSEAVYEAALGLYDLNLAAIVALNSQRDPK 919 (1323)
Q Consensus 842 v~~~p-p-~le~aL~~i~~l~~~~~~~~~~~~~~~~~~ae~alk~l~~L~d~~~Ly~~ALg~YD~~lal~VAq~sqkDPk 919 (1323)
-| + .+..+... +.+. ...|+|++ .. +||.
T Consensus 626 ---i~~~~~~~~~~~~---l~~~-------------~~~~~a~~-----------------~~-------------~~~~ 656 (814)
T 3mkq_A 626 ---VEGKDSLTKIARF---LEGQ-------------EYYEEALN-----------------IS-------------PDQD 656 (814)
T ss_dssp ---CCCHHHHHHHHHH---HHHT-------------TCHHHHHH-----------------HC-------------CCHH
T ss_pred ---CCCHHHHHHHHHH---HHHC-------------CCHHHHEE-----------------CC-------------CCCC
T ss_conf ---8846789999999---9868-------------98689605-----------------27-------------8931
Q ss_pred CCHHHHHHHHCCCCHHCCCCHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 10486899841990000430878701999999999980999589999999997066699985017957799999999988
Q 000736 920 EFLPYLQELESMPPLLMRYTIDLRLQRFENALKHIVSMGDSYHADCLNLMKKYAQLFPLGLKLITDPAKMEQVLEAWADH 999 (1323)
Q Consensus 920 EYLpfL~~L~~l~~~~~~~~Id~~L~rye~Al~~l~~~g~~~~~~ale~~~~~~~ly~~AL~L~~d~~~~~~i~~~~A~~ 999 (1323)
.+| ++.... +.|+.|++++ ..
T Consensus 657 ----------------~~f----------------------------~~~l~~-~~~~~A~~~~--------------~~ 677 (814)
T 3mkq_A 657 ----------------QKF----------------------------ELALKV-GQLTLARDLL--------------TD 677 (814)
T ss_dssp ----------------HHH----------------------------HHHHHH-TCHHHHHHHH--------------TT
T ss_pred ----------------HHE----------------------------EHHHHC-CCHHHHHHHH--------------HH
T ss_conf ----------------425----------------------------021450-9999999999--------------86
Q ss_pred HHCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCC
Q ss_conf 73113789999999966999999999999099999999983318997899999999999999859958999999995099
Q 000736 1000 LSDVKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCGD 1079 (1323)
Q Consensus 1000 L~~~~~~~eAa~~y~~ag~~~kAl~~y~~ag~W~~al~lA~~l~~~~~~~~~l~~~lA~~L~~~~~~~eAa~i~~~y~~d 1079 (1323)
+.+...|+++|.+++..++++.|.+||.++++|+.+..+....+ .. +....+++.....|++..|..+|++ +||
T Consensus 678 ~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~-~~----~~~~~~~~~a~~~~~~~~A~~~~~~-~g~ 751 (814)
T 3mkq_A 678 ESAEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFN-NK----EGLVTLAKDAETTGKFNLAFNAYWI-AGD 751 (814)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTT-CH----HHHHHHHHHHHHTTCHHHHHHHHHH-HTC
T ss_pred HCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHCC-CH----HHHHHHHHHHHHCCCHHHHHHHHHH-CCC
T ss_conf 17676899999999984998999999987027135589987729-99----9999999999985866799999988-099
Q ss_pred HHHHHHHHHHHCCHHHHHHHHHHCCCCH
Q ss_conf 9999999997149999999998518710
Q 000736 1080 VTNGISLLIDARDWEEALRVAFMHRRED 1107 (1323)
Q Consensus 1080 ~e~Ai~~~i~~~~w~eA~rLa~~h~~~d 1107 (1323)
+++|+++|++.++|++|+.||..|...+
T Consensus 752 ~~~a~~~~~~~~~~~~A~~lA~~~~~~~ 779 (814)
T 3mkq_A 752 IQGAKDLLIKSQRFSEAAFLGSTYGLGD 779 (814)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHCCCH
T ss_conf 9999999998699478999998709975
No 2
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=1.00 E-value=1 Score=331.37 Aligned_cols=241 Identities=11% Similarity=0.130 Sum_probs=188.6
Q ss_pred CEEEEEEECCCCEEEEEECCCCEEEEECCCCCCCCCCEEECCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEECCCCEEE
Q ss_conf 21579662589899999379728998224433433311202222222235799997899999039998999968995999
Q 000736 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1323)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~V~~i~~spd~~~La~as~dG~I~l 101 (1323)
.+...++++|++.|++++++ .++.|++ .++.. ... +.+| .+.|.+++|+|||+.||+++.||+|++
T Consensus 20 ~~~~~~~spdg~~l~~~~~~-~v~l~~~--~~~~~---~~~----~~~h----~~~v~~~~~spdg~~lasg~~d~~v~l 85 (611)
T 1nr0_A 20 TAVVLGNTPAGDKIQYCNGT-SVYTVPV--GSLTD---TEI----YTEH----SHQTTVAKTSPSGYYCASGDVHGNVRI 85 (611)
T ss_dssp CCCCCEECTTSSEEEEEETT-EEEEEET--TCSSC---CEE----ECCC----SSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred CEEEEEECCCCCEEEECCCC-EEEEECC--CCCCC---CEE----ECCC----CCCEEEEEECCCCCEEEEEECCCCEEE
T ss_conf 23697667999979967999-7999457--87242---737----6589----986599999999968999948997899
Q ss_pred EECCCC--EE-EEECEECCCEEEEEECCCCCEEEEEECC----CCEEEEEECCCEEEEEEECCCCCCCEECCCCCCCCCC
Q ss_conf 968999--19-9910035959999993789969999699----6499994047210123203467974001476246899
Q 000736 102 HSVDGN--AT-EVVGRVEGGVRFISPSPDGDLLGVTTGF----GQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFS 174 (1323)
Q Consensus 102 w~~~~~--~~-e~vg~~~~~I~~~awSPDG~~LA~~s~d----~tI~l~t~~~d~~~e~~l~~~~~~~~Vs~tqf~~~d~ 174 (1323)
|+..++ .. .....|.+.|.+++|||||+.||+++.+ ++|.+ |+. +.... .+.+|..
T Consensus 86 Wd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~----wd~--~~~~~-----------~l~gh~~ 148 (611)
T 1nr0_A 86 WDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFL----FDT--GTSNG-----------NLTGQAR 148 (611)
T ss_dssp EESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEE----TTT--CCBCB-----------CCCCCSS
T ss_pred EECCCCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCCEEEEEE----EEC--CCCCC-----------EECCCCC
T ss_conf 489898415667622557844899989999979999899773669999----638--99763-----------2547889
Q ss_pred CEEEEEEECCCCE-EEEEECCCCCCCCCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCCCCCCEEE
Q ss_conf 8578999068857-999225544558898899997999936664156798545899936999699996289999999399
Q 000736 175 FKSPISWRGDGKY-FATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIV 253 (1323)
Q Consensus 175 ~v~~IsWs~DG~~-lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~g~~~slawsPdG~lIAs~~~d~~~~~~~~V~ 253 (1323)
.+.+++|+|||.+ |+ +++ .|++|++|+..++++..++..|.+.+.+++|+|+|++||+++.|+ .|+
T Consensus 149 ~v~~v~f~p~~~~~l~-s~s------~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~------~i~ 215 (611)
T 1nr0_A 149 AMNSVDFKPSRPFRII-SGS------DDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDG------TIV 215 (611)
T ss_dssp CEEEEEECSSSSCEEE-EEE------TTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTS------CEE
T ss_pred CCEEEEECCCCCEEEE-EEE------CCCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCC------CEE
T ss_conf 8369998899982999-992------898099997999757665200257169999979999899998999------199
Q ss_pred EEE-CCCEEEEEEEEC----CCCCCCEEEEEECCCCCEEEEEECCCCCCEEEEEEEECCEE
Q ss_conf 991-798058799940----68877589999945987258997168877499999207756
Q 000736 254 FYE-RNGLERSSFDIN----EQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHW 309 (1323)
Q Consensus 254 l~e-~nGl~~~ef~l~----~~~~~~V~~laWSpDg~~LA~~~~d~~~~~VqlW~~~n~~w 309 (1323)
+|+ .+|.....+.-. ..+...|.+++|+|||+.||+++.|+ +|++|+..+...
T Consensus 216 lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~---~v~lWd~~~~~~ 273 (611)
T 1nr0_A 216 LYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADK---TIKIWNVATLKV 273 (611)
T ss_dssp EEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTS---EEEEEETTTTEE
T ss_pred EEECCCCCEEEEECCCCCCCCCCCCCEEEEEECCCCCEEEEEECCC---EEEEEECCCCCE
T ss_conf 9889998286651366432356678789999979999999990898---099996888701
No 3
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=1.00 E-value=1 Score=318.40 Aligned_cols=437 Identities=14% Similarity=0.143 Sum_probs=309.3
Q ss_pred CEEEEEEECCCCEEEEEECCCCEEEEECCCCCCCCCCEEECCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEECCCCEEE
Q ss_conf 21579662589899999379728998224433433311202222222235799997899999039998999968995999
Q 000736 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1323)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~V~~i~~spd~~~La~as~dG~I~l 101 (1323)
.+.+++|.+|+..|++++.|+.|..||.+ ++. +.+ +.+| .+.|.+++|+||++.|++++.||+|++
T Consensus 18 ~V~~~a~spdg~~las~~~d~~v~iWd~~---~~~---~~~----l~gh----~~~V~~l~fspdg~~las~~~d~~i~v 83 (577)
T 2ymu_A 18 SVRGVAFSPDGQTIASASDDKTVKLWNRN---GQL---LQT----LTGH----SSSVWGVAFSPDGQTIASASDDKTVKL 83 (577)
T ss_dssp CEEEEEECTTSSCEEEEETTSEEEEECTT---SCE---EEE----EECC----SSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred CEEEEEECCCCCEEEEEECCCEEEEEECC---CCE---EEE----EECC----CCCEEEEEECCCCCEEEEEECCCEEEE
T ss_conf 57999998998999999389989999799---978---999----9689----899899999899999999969897999
Q ss_pred EECCCCEEEEECEECCCEEEEEECCCCCEEEEEECCCCEEEEEECCCEEEEEEECCCC--------CCCEEC--------
Q ss_conf 9689991999100359599999937899699996996499994047210123203467--------974001--------
Q 000736 102 HSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELA--------EGFDVH-------- 165 (1323)
Q Consensus 102 w~~~~~~~e~vg~~~~~I~~~awSPDG~~LA~~s~d~tI~l~t~~~d~~~e~~l~~~~--------~~~~Vs-------- 165 (1323)
|+..+..+..+..|.+.|.+++|||||+.|++++.|+++.+|+...........+... +...+.
T Consensus 84 Wd~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 163 (577)
T 2ymu_A 84 WNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTV 163 (577)
T ss_dssp EETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSEE
T ss_pred EECCCCEEEEEECCCCCEEEEEECCCCCEEEEECCCCCEEECCCCCCEEEECCCCCCCEEEEEEECCCCCCEECCCCCCE
T ss_conf 98999789999789998899999899998999807983352023552001104777743555420377632002555310
Q ss_pred ---------CCCCCCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCE
Q ss_conf ---------47624689985789990688579992255445588988999979999366641567985458999369996
Q 000736 166 ---------EPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGAN 236 (1323)
Q Consensus 166 ---------~tqf~~~d~~v~~IsWs~DG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~g~~~slawsPdG~l 236 (1323)
......+...+..+.|+|||++++ +++ .++.|++|+. +|++..+...+.+.+.+++|+|+|++
T Consensus 164 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~------~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~s~dg~~ 235 (577)
T 2ymu_A 164 KLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIA-SAS------DDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQT 235 (577)
T ss_dssp EEECTTSCEEEEEECCSSCEEEEEECTTSSCEE-EEE------TTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSC
T ss_pred ECCCCCEEEEEECCCCCCCEEEEEECCCCCEEE-EEC------CCCEEEEEEC-CCCEEEEEECCCCCEEEEEECCCCCE
T ss_conf 000000000000268776356654169977899-985------9998999949-99689999468898899999799999
Q ss_pred EEEEECCCCCCCCCEEEEEECCCEEEEEEEECCCCCCCEEEEEECCCCCEEEEEECCCCCCEEEEEEEECCEEEEEEEEE
Q ss_conf 99996289999999399991798058799940688775899999459872589971688774999992077567776999
Q 000736 237 IAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIR 316 (1323)
Q Consensus 237 IAs~~~d~~~~~~~~V~l~e~nGl~~~ef~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~VqlW~~~n~~wyLkqel~ 316 (1323)
|++++.+ ..|.+|+.++..... +.. +...|..++|+||++.|++++.|+ +|++|+.... +.+.+.
T Consensus 236 l~~~~~d------~~i~~w~~~~~~~~~--~~~-~~~~v~~v~~~~d~~~l~~~~~d~---~i~~w~~~~~---~~~~~~ 300 (577)
T 2ymu_A 236 IASASDD------KTVKLWNRNGQLLQT--LTG-HSSSVNGVAFRPDGQTIASASDDK---TVKLWNRNGQ---LLQTLT 300 (577)
T ss_dssp EEEEETT------SCEEEECTTSCEEEE--ECC-CSSCEEEEEECTTSSEEEEEETTS---CEEEEETTSC---EEEEEC
T ss_pred EEEEECC------CEEEEEECCCCEEEE--EEC-CCCCEEEEEECCCCCEEEEEECCC---EEEEEECCCC---EEEEEE
T ss_conf 9999189------989999599979999--806-889879999968999999995999---7999948995---899970
Q ss_pred EECCCCEEEEECCCCCCEEEEEECCCCEEEEEE--------------EEEEE--ECCCEEEEEEECCEEEEEECCCCCCC
Q ss_conf 825983999991599927999944994999999--------------99521--08990699991997999425776799
Q 000736 317 YLRRDGIRFMWHPTKPLQLICWTLDGQITTYNF--------------IWTTA--VMENSTALVIDGSKILVTPLSLSLMP 380 (1323)
Q Consensus 317 ~~~~~~~~v~W~p~~~~~L~~~~~~g~~~~~~~--------------~~~~~--~~d~~~v~viDg~~i~lt~l~~~~vP 380 (1323)
.+......+.|+|++.. +..+..+|.+..++. ++.++ |++..++...++..+.+|+....
T Consensus 301 ~h~~~v~~~~~~~~~~~-l~t~~~d~~i~~w~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~~--- 376 (577)
T 2ymu_A 301 GHSSSVWGVAFSPDGQT-IASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ--- 376 (577)
T ss_dssp CCSSCEEEEEECTTSSE-EEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTCC---
T ss_pred CCCCCEEEEEECCCCCE-EEEEECCCEEEEEECCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEECCCCC---
T ss_conf 68897699999999999-99996999599996999725787478897799999899999999969998999908997---
Q ss_pred CCCEEEEE-CCCCCEEEEEEECCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEEEECCC
Q ss_conf 98301210-28998899999229999999999889819999789988522235971247420244566837999994498
Q 000736 381 PPMYLFSL-KFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSH 459 (1323)
Q Consensus 381 pPm~~~~l-~~~~~V~~VaFspdg~~~~LAs~s~Dg~I~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~ 459 (1323)
...++ .|...|.+++|+|+| +.|++++.|++|++|+.... ....+. .+...+..++|+|++
T Consensus 377 ---~~~~~~~~~~~v~~~~~s~dg--~~l~~~~~d~~v~~~~~~~~-~~~~~~------------~~~~~v~~~~~s~d~ 438 (577)
T 2ymu_A 377 ---LLQTLTGHSSSVRGVAFSPDG--QTIASASDDKTVKLWNRNGQ-LLQTLT------------GHSSSVWGVAFSPDD 438 (577)
T ss_dssp ---EEEEEECCSSCEEEEEECTTS--SCEEEEETTSEEEEECTTCC-EEEEEE------------CCSSCEEEEEECTTS
T ss_pred ---EEEEECCCCCCEEEEEECCCC--CEEEEEECCCEEEEEECCCC-EEEEEC------------CCCCCEEEEEECCCC
T ss_conf ---899852788974899998999--99999949998999969997-898962------------889975799998999
Q ss_pred EEEEEEECCCCCEEEEEEEECCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEECCCCCCEEE
Q ss_conf 49999826998702899831266864441124444211455523422245532034310145770899810788975699
Q 000736 460 LLLSVSHHGPRHSNYFRGATLNEDGLLGFYAQEIELACSEDHVQGLLTCAGWHAKVSTQIPLEGLVIAIAPNNAKKYSAF 539 (1323)
Q Consensus 460 ~lla~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~ 539 (1323)
.++++++.+ ..+.+|... + . .+.....+.+.|..++++| ++..++
T Consensus 439 ~~l~~~~~d--~~v~~w~~~--~-----------------~-------------~~~~~~~~~~~v~~~~~sp-d~~~la 483 (577)
T 2ymu_A 439 QTIASASDD--KTVKLWNRN--G-----------------Q-------------LLQTLTGHSSSVRGVAFSP-DGQTIA 483 (577)
T ss_dssp SEEEEEETT--SEEEEEETT--S-----------------C-------------EEEEEECCSSCEEEEEECT-TSCEEE
T ss_pred CEEEEECCC--CEEEEEECC--C-----------------C-------------EEEEECCCCCCEEEEEECC-CCCEEE
T ss_conf 999999399--989999799--9-----------------8-------------8999727899778999969-999999
Q ss_pred EEEECCEEEEEEC
Q ss_conf 9951875999925
Q 000736 540 LQFHGGKISEYMS 552 (1323)
Q Consensus 540 ~q~~dG~v~~~~~ 552 (1323)
....||+|..|+.
T Consensus 484 s~~~d~~i~iw~~ 496 (577)
T 2ymu_A 484 SASDDKTVKLWNR 496 (577)
T ss_dssp EEETTSEEEEEET
T ss_pred EEECCCEEEEECC
T ss_conf 9919897999939
No 4
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=1.00 E-value=1 Score=312.99 Aligned_cols=685 Identities=13% Similarity=0.066 Sum_probs=399.4
Q ss_pred CEEEEEEECCCCEEEEEECCCCEEEEECCCCCCCCCCEEECCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEECCCCEEE
Q ss_conf 21579662589899999379728998224433433311202222222235799997899999039998999968995999
Q 000736 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1323)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~V~~i~~spd~~~La~as~dG~I~l 101 (1323)
.+.+.+|.+++..+++++.++.|..|+. .+++. +.+ +.++ .+.|.++.|+|+++.|++++.||.|.+
T Consensus 57 ~v~~~~~s~~~~~l~~~~~dg~i~vw~~--~~~~~---~~~----~~~~----~~~v~~~~~s~~~~~l~~~~~dg~i~v 123 (814)
T 3mkq_A 57 PVRAGKFIARKNWIIVGSDDFRIRVFNY--NTGEK---VVD----FEAH----PDYIRSIAVHPTKPYVLSGSDDLTVKL 123 (814)
T ss_dssp CEEEEEEEGGGTEEEEEETTSEEEEEET--TTCCE---EEE----EECC----SSCEEEEEECSSSSEEEEEETTSEEEE
T ss_pred CEEEEEEECCCCEEEEEECCCEEEEEEC--CCCCE---EEE----EECC----CCCEEEEEEECCCCEEEEECCCCEEEE
T ss_conf 6889999689998999928994999989--99958---799----8168----997899999589998999928998999
Q ss_pred EECCCC-EE-EEECEECCCEEEEEECC-CCCEEEEEECCCCEEEEEEC-CCEEEEEEECCCCCCCEECCCCCCCCCCCEE
Q ss_conf 968999-19-99100359599999937-89969999699649999404-7210123203467974001476246899857
Q 000736 102 HSVDGN-AT-EVVGRVEGGVRFISPSP-DGDLLGVTTGFGQILVMTHD-WDLLYENPLEELAEGFDVHEPELSSSFSFKS 177 (1323)
Q Consensus 102 w~~~~~-~~-e~vg~~~~~I~~~awSP-DG~~LA~~s~d~tI~l~t~~-~d~~~e~~l~~~~~~~~Vs~tqf~~~d~~v~ 177 (1323)
|+.+++ .. .....|.+.|.+++||| ||..|++++.|++|.+|+.. ..+...... .+...+.
T Consensus 124 w~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~---------------~~~~~v~ 188 (814)
T 3mkq_A 124 WNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTT---------------GQERGVN 188 (814)
T ss_dssp EEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEEC---------------CCTTCCC
T ss_pred EECCCCCEEEEEECCCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCCEEEEEC---------------CCCCCEE
T ss_conf 9899995487998379986889999769999999994889499998999961069835---------------8889779
Q ss_pred EEEEEC--CCCEEEEEECCCCCCCCCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEE
Q ss_conf 899906--885799922554455889889999799993666415679854589993699969999628999999939999
Q 000736 178 PISWRG--DGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFY 255 (1323)
Q Consensus 178 ~IsWs~--DG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~g~~~slawsPdG~lIAs~~~d~~~~~~~~V~l~ 255 (1323)
.++|+| ||.+++ +++ .++.|++|+..+++...+...+.+.+.+++|+|+|++|++++.++ .|.+|
T Consensus 189 ~~~~~~~~~~~~l~-~~~------~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg------~v~vw 255 (814)
T 3mkq_A 189 YVDYYPLPDKPYMI-TAS------DDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDG------TLKIW 255 (814)
T ss_dssp EEEECCSTTCCEEE-EEC------TTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTS------CEEEE
T ss_pred EEEEEECCCCCEEE-EEE------CCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCC------EEEEE
T ss_conf 99999779998999-993------899799999999918899847888878999859999999990899------69999
Q ss_pred ECCC-EEEEEEEECCCCCCCEEEEEECCCCC--EEEEEECCCCCCEEEEEEEECCEEEEEEEEEEECCCCEEEEECCCCC
Q ss_conf 1798-05879994068877589999945987--25899716887749999920775677769998259839999915999
Q 000736 256 ERNG-LERSSFDINEQIDSTVELLKWNCMSD--LLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKP 332 (1323)
Q Consensus 256 e~nG-l~~~ef~l~~~~~~~V~~laWSpDg~--~LA~~~~d~~~~~VqlW~~~n~~wyLkqel~~~~~~~~~v~W~p~~~ 332 (1323)
+.+. ..... +.. +...+..++|+|+|. +++++..+ .+.+|+..+... . +.|+|++.
T Consensus 256 d~~~~~~~~~--~~~-~~~~v~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~----~----------~~~~~~g~ 314 (814)
T 3mkq_A 256 NSSTYKVEKT--LNV-GLERSWCIATHPTGRKNYIASGFDN----GFTVLSLGNDEP----T----------LSLDPVGK 314 (814)
T ss_dssp ETTTCSEEEE--ECC-SSSSEEEEEECTTCGGGEEEEEETT----EEEEEECSCCSC----C----------EEECSSSE
T ss_pred ECCCCCEEEE--EEC-CCCCEEEEEECCCCCCEEEEEEECC----CEEEEECCCCCC----E----------EEECCCCC
T ss_conf 8999947778--406-8886799999249995099999079----879997679974----1----------67779987
Q ss_pred CEEEEEECCC-------------------C-------------EEEEEEEEEEEECCCEEEEEEECCEEEEEECCCCCCC
Q ss_conf 2799994499-------------------4-------------9999999952108990699991997999425776799
Q 000736 333 LQLICWTLDG-------------------Q-------------ITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMP 380 (1323)
Q Consensus 333 ~~L~~~~~~g-------------------~-------------~~~~~~~~~~~~~d~~~v~viDg~~i~lt~l~~~~vP 380 (1323)
. +.....+. . .......|+ |++. .+++..+..+.+|.+..+.
T Consensus 315 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s--pdg~-~la~~~~~~~~i~~~~~~~-- 388 (814)
T 3mkq_A 315 L-VWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHS--PNGR-FVTVVGDGEYVIYTALAWR-- 388 (814)
T ss_dssp E-EEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEEC--TTSS-EEEEEETTEEEEEETTTTE--
T ss_pred E-EEECCCCCCCEEEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCCEEEEC--CCCC-EEEEECCCEEEEEECCCCC--
T ss_conf 8-99776366411246653046555556762014651178876577406899--9999-8999429889999874544--
Q ss_pred CCCEEEEECCCCCEEEEEEECCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEEEECCC-
Q ss_conf 9830121028998899999229999999999889819999789988522235971247420244566837999994498-
Q 000736 381 PPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSH- 459 (1323)
Q Consensus 381 pPm~~~~l~~~~~V~~VaFspdg~~~~LAs~s~Dg~I~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~- 459 (1323)
..+.+.+.+++|+|+| +.+|+++.+|+|.+|+... + +...+..+.|+|++
T Consensus 389 -------~~~~~~i~~~~~spdg--~~la~~~~~g~v~l~~~~~--------~------------~~~~v~~~~~s~dg~ 439 (814)
T 3mkq_A 389 -------NKAFGKCQDFVWGPDS--NSYALIDETGQIKYYKNFK--------E------------VTSWSVPMHSAIDRL 439 (814)
T ss_dssp -------EEEEEECSEEEECTTS--SCEEEECTTCCEEEEETTE--------E------------CTTCCCCCSSCCCEE
T ss_pred -------CCCCCCEEEEEEECCC--CEEEEEECCCCEEEEECCC--------C------------CCCEEECCCCCCCCE
T ss_conf -------5679954799994799--8599996898399997777--------7------------524397378675523
Q ss_pred --EEEEEEECCCCCEEEEEEEECCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEECCCCCCE
Q ss_conf --499998269987028998312668644411244442114555234222455320343101457708998107889756
Q 000736 460 --LLLSVSHHGPRHSNYFRGATLNEDGLLGFYAQEIELACSEDHVQGLLTCAGWHAKVSTQIPLEGLVIAIAPNNAKKYS 537 (1323)
Q Consensus 460 --~lla~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~ 537 (1323)
..+++++.+ ..+.+|.+.- + . ..... .+....+.++| ++..
T Consensus 440 ~~~~l~~~~~d--~~v~~~d~~~-~-----------------------------~--~~~~~--~~~~~~v~~s~-dg~~ 482 (814)
T 3mkq_A 440 FSGALLGVKSD--GFVYFFDWDN-G-----------------------------T--LVRRI--DVNAKDVIWSD-NGEL 482 (814)
T ss_dssp ECSSSEEEEET--TEEEEECTTT-C-----------------------------C--EEEEE--SSCEEEEEECT-TSSE
T ss_pred ECCEEEEEECC--CEEEEEECCC-C-----------------------------C--EEEEE--ECCCCEEEECC-CCCE
T ss_conf 65469999669--9899999876-9-----------------------------5--99997--35888799969-9999
Q ss_pred EEEE------EECCEEEEEECCC-C---CCCCC---CCCCCCCCCCCCC---CEEEEEECCCCCCCCEEEEECCCCCEEE
Q ss_conf 9999------5187599992544-5---56888---7788777898888---2369972379997426999748972464
Q 000736 538 AFLQ------FHGGKISEYMSRV-G---LTGGA---LTHDDASFPSSCP---WMNVVSVGTNGPLKPLLFGLDDGGRLHV 601 (1323)
Q Consensus 538 ~~~q------~~dG~v~~~~~~~-~---~~~~~---~~~~~~~fp~~c~---~~~~~~~~~~~~~~~~~~gL~~~~~L~~ 601 (1323)
+++. ..++.++.+.... . +.... .++..-.|...|. .+... .|.+ .+.+--++.+++
T Consensus 483 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~--~w~~---~~~i~~t~~~~~-- 555 (814)
T 3mkq_A 483 VMIVNTNSNGDEASGYTLLFNKDAYLEAANNGNIDDSEGVDEAFDVLYELSESITSG--KWVG---DVFIFTTATNRL-- 555 (814)
T ss_dssp EEEEECCCSSCSCSEEEEEECHHHHHHHHHHTCCBTTTBCTTTEEEEEEECSCCSEE--EEET---TEEEEECTTSEE--
T ss_pred EEEEECCCCCCCCEEEEEEECHHHHHHHHHCCCCCCCCCHHHHEEEEEEECCEEEEE--EEEC---CEEEEECCCCEE--
T ss_conf 999986766677428999954688666664168762125022213645764278765--9808---889997688708--
Q ss_pred CCEEEECCCEEEEEECCCCCCCCEEEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 89753048135998416866631089999307819999868633222112223433346766445543333356897899
Q 000736 602 SGKIVCNNCSSFSFYSKSAGQAMSHLILATKQNLLFIVDISDILHGELALKYENFTHVGNRRKEENISYINIWERGAKVI 681 (1323)
Q Consensus 602 ~~~~i~~~~tSf~~~~~~~~~~~~~Ll~tT~~h~l~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~R~vErGs~iV 681 (1323)
.+.+..+ ...+.+..+.+.+ ++-.-.|.+++
T Consensus 556 ----------~~~~~~~-------~~~~~~~~~~~~~--------------------------------~~~~~~~~~l~ 586 (814)
T 3mkq_A 556 ----------NYFVGGK-------TYNLAHYTKEMYL--------------------------------LGYLARDNKVY 586 (814)
T ss_dssp ----------EEEETTE-------EEEEEECSSCCEE--------------------------------EEEEGGGTEEE
T ss_pred ----------EEEECCE-------EEEEEECCCCEEE--------------------------------EEEEECCCEEE
T ss_conf ----------9996986-------6899998966799--------------------------------99983299999
Q ss_pred EEECCCCCEEEEEECCCCEEECCCHHHHHHHHHHHHHCCCHHHHHH-HHHHCCCCCCEEEECCCHHHHHHHHHHHHHHCC
Q ss_conf 9957997189999188722210330323999999981023999999-987514235379954777789871988986429
Q 000736 682 GVLHGDEAAVILQTNRGNLECMYPRKLVLTSIVNALIQGRFRDALV-MVRRHRINFNVIVDHCGWQAFLQSASEFVRQVN 760 (1323)
Q Consensus 682 ~~~p~~~~~vVLQmpRGNLEtI~PR~lvL~~i~~~l~~~~y~~Af~-~~R~hRIdlNll~D~~~p~~Fl~~~~~Fv~qv~ 760 (1323)
.+-... .-.+++++-.-++ ....+..++|.+|.. +. ..
T Consensus 587 ~~d~~~-~~~~~~l~~~~~~-----------~~~~~~~~~~~~a~~~~l---------------------------~~-- 625 (814)
T 3mkq_A 587 LADREV-HVYGYEISLEVLE-----------FQTLTLRGEIEEAIENVL---------------------------PN-- 625 (814)
T ss_dssp EECTTC-CEEEEECCHHHHH-----------HHHHHHTTCHHHHHHHTG---------------------------GG--
T ss_pred EECCCC-CEEEEEECCHHHH-----------HHHHHHHCCHHHHHHHHH---------------------------HC--
T ss_conf 992888-8799998909999-----------969987079999998887---------------------------42--
Q ss_pred CCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
Q ss_conf 96406578730357731112434543345786544568975556665887278999999999851299998613577677
Q 000736 761 NLSYITEFVCAINNENITETLYKKFQFLSLPCREEFKDLPAKDFKASECNKVSSVLLAIRKALEEKVPESPSRELCILTT 840 (1323)
Q Consensus 761 ~~~~l~lFls~L~~edvt~t~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~KV~~iC~a~~~~l~~~~~~~~~~~~~ilT~ 840 (1323)
+ + + -+.+ +.+...|++.
T Consensus 626 ---------------------------i--~------------------~-~~~~-~~~~~~l~~~-------------- 642 (814)
T 3mkq_A 626 ---------------------------V--E------------------G-KDSL-TKIARFLEGQ-------------- 642 (814)
T ss_dssp ---------------------------C--C------------------C-HHHH-HHHHHHHHHT--------------
T ss_pred ---------------------------C--C------------------C-HHHH-HHHHHHHHHC--------------
T ss_conf ---------------------------8--8------------------4-6789-9999999868--------------
Q ss_pred HHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCCC
Q ss_conf 63189800999999999998620159999778993449999999985515789999997115946899999983179211
Q 000736 841 LARSDPPALEEALERIKIIRETELLGSDEPRRMSYPSAEEALKHLLWLADSEAVYEAALGLYDLNLAAIVALNSQRDPKE 920 (1323)
Q Consensus 841 ~v~~~pp~le~aL~~i~~l~~~~~~~~~~~~~~~~~~ae~alk~l~~L~d~~~Ly~~ALg~YD~~lal~VAq~sqkDPkE 920 (1323)
.- .+.||+... + ...-|+.||.+-+|+.|+-+|+.. .+|
T Consensus 643 ----~~--~~~a~~~~~----------------~----------------~~~~f~~~l~~~~~~~A~~~~~~~-~~~-- 681 (814)
T 3mkq_A 643 ----EY--YEEALNISP----------------D----------------QDQKFELALKVGQLTLARDLLTDE-SAE-- 681 (814)
T ss_dssp ----TC--HHHHHHHCC----------------C----------------HHHHHHHHHHHTCHHHHHHHHTTC-CCH--
T ss_pred ----CC--HHHHEECCC----------------C----------------CCHHEEHHHHCCCHHHHHHHHHHH-CCH--
T ss_conf ----98--689605278----------------9----------------314250214509999999999861-767--
Q ss_pred CHHHHHHHHCCCCHHCCCCHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCHHHHHHHC---CCCHHHHHHHHHHH
Q ss_conf 048689984199000043087870199999999998099958999999999706669998501---79577999999999
Q 000736 921 FLPYLQELESMPPLLMRYTIDLRLQRFENALKHIVSMGDSYHADCLNLMKKYAQLFPLGLKLI---TDPAKMEQVLEAWA 997 (1323)
Q Consensus 921 YLpfL~~L~~l~~~~~~~~Id~~L~rye~Al~~l~~~g~~~~~~ale~~~~~~~ly~~AL~L~---~d~~~~~~i~~~~A 997 (1323)
..|+++.+...+.|+ ++.|...+.+. +.|..+..|+ .+.+. ....|
T Consensus 682 ------------------------~~W~~la~~al~~~~--~~~A~~~y~~~-~d~~~l~~l~~~~~~~~~----~~~~~ 730 (814)
T 3mkq_A 682 ------------------------MKWRALGDASLQRFN--FKLAIEAFTNA-HDLESLFLLHSSFNNKEG----LVTLA 730 (814)
T ss_dssp ------------------------HHHHHHHHHHHHTTC--HHHHHHHHHHH-TCHHHHHHHHHHTTCHHH----HHHHH
T ss_pred ------------------------HHHHHHHHHHHHCCC--HHHHHHHHHHC-CCHHHHHHHHHHCCCHHH----HHHHH
T ss_conf ------------------------689999999998499--89999999870-271355899877299999----99999
Q ss_pred HHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 887311378999999996699999999999909999999998331899789999999999999985995899999
Q 000736 998 DHLSDVKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKI 1072 (1323)
Q Consensus 998 ~~L~~~~~~~eAa~~y~~ag~~~kAl~~y~~ag~W~~al~lA~~l~~~~~~~~~l~~~lA~~L~~~~~~~eAa~i 1072 (1323)
+-.+..+++..|..+|.++|++++|+++|..++.|.+|+.+|+.++...+.+..+....++.|.+.|++..|..+
T Consensus 731 ~~a~~~~~~~~A~~~~~~~g~~~~a~~~~~~~~~~~~A~~lA~~~~~~~~~i~~~~~~~~~~L~~~~~~~~a~~l 805 (814)
T 3mkq_A 731 KDAETTGKFNLAFNAYWIAGDIQGAKDLLIKSQRFSEAAFLGSTYGLGDNEVNDIVTKWKENLILNGKNTVSERV 805 (814)
T ss_dssp HHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTCHHHHTTB
T ss_pred HHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf 999985866799999988099999999999869947899999870997578899999999998761646689863
No 5
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=1.00 E-value=1 Score=309.65 Aligned_cols=198 Identities=17% Similarity=0.220 Sum_probs=125.3
Q ss_pred CCCCCCCCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCEEEEECEECCCEEEEEECCCCCEEEEEECCCCEEEEEEC
Q ss_conf 22235799997899999039998999968995999968999199910035959999993789969999699649999404
Q 000736 67 IEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHD 146 (1323)
Q Consensus 67 ~~~~~~~~~~~V~~i~~spd~~~La~as~dG~I~lw~~~~~~~e~vg~~~~~I~~~awSPDG~~LA~~s~d~tI~l~t~~ 146 (1323)
|.+| .+.|.+++|+|||+.||+++.||+|++|+..+..+..+..|.+.|++++|||||++||+++.|++|.+|+..
T Consensus 12 L~GH----~~~V~~~a~spdg~~las~~~d~~v~iWd~~~~~~~~l~gh~~~V~~l~fspdg~~las~~~d~~i~vWd~~ 87 (577)
T 2ymu_A 12 LEAH----SSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN 87 (577)
T ss_dssp ECCC----SSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred ECCC----CCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECC
T ss_conf 8789----985799999899899999938998999979997899996898998999998999999999698979999899
Q ss_pred CCEEEEEEECCCCCCCEECCCCCCCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCEEEEEECCCCCEEEEECCCCCCEE
Q ss_conf 72101232034679740014762468998578999068857999225544558898899997999936664156798545
Q 000736 147 WDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGA 226 (1323)
Q Consensus 147 ~d~~~e~~l~~~~~~~~Vs~tqf~~~d~~v~~IsWs~DG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~g~~~ 226 (1323)
...+.... +|...+.+++|+|||++++ +++ .++.+++|+. .+........+.+.+.
T Consensus 88 ~~~~~~~~----------------~~~~~v~~~~~s~d~~~l~-~~~------~d~~~~~~~~-~~~~~~~~~~~~~~v~ 143 (577)
T 2ymu_A 88 GQLLQTLT----------------GHSSSVRGVAFSPDGQTIA-SAS------DDKTVKLWNR-NGQLLQTLTGHSSSVW 143 (577)
T ss_dssp SCEEEEEC----------------CCSSCEEEEEECTTSSEEE-EEE------TTSCEEEEET-TCCEEEEECCCSSCEE
T ss_pred CCEEEEEE----------------CCCCCEEEEEECCCCCEEE-EEC------CCCCEEECCC-CCCEEEECCCCCCCEE
T ss_conf 97899997----------------8999889999989999899-980------7983352023-5520011047777435
Q ss_pred EEEECCCCCEEEEEECCCCCCCCCEEEEEECCCEEEEEEEECCCCCCCEEEEEECCCCCEEEEEECCCCCCEEEEEEE
Q ss_conf 899936999699996289999999399991798058799940688775899999459872589971688774999992
Q 000736 227 VLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFF 304 (1323)
Q Consensus 227 slawsPdG~lIAs~~~d~~~~~~~~V~l~e~nGl~~~ef~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~VqlW~~ 304 (1323)
.+.|+|++..+++++.+ ..+.+|..++...... . .+...|..++|+|||+.|++++.|+ .|++|+.
T Consensus 144 ~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~--~-~~~~~v~~~~~~~~~~~l~~~~~d~---~v~~w~~ 209 (577)
T 2ymu_A 144 GVAFSPDGQTIASASDD------KTVKLWNRNGQLLQTL--T-GHSSSVWGVAFSPDGQTIASASDDK---TVKLWNR 209 (577)
T ss_dssp EEEECTTSSCEEEEETT------SEEEEECTTSCEEEEE--E-CCSSCEEEEEECTTSSCEEEEETTS---EEEEECT
T ss_pred EEEEECCCCCCEECCCC------CCEECCCCCEEEEEEC--C-CCCCCEEEEEECCCCCEEEEECCCC---EEEEEEC
T ss_conf 55420377632002555------3100000000000002--6-8776356654169977899985999---8999949
No 6
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=1.00 E-value=1 Score=307.45 Aligned_cols=200 Identities=13% Similarity=0.119 Sum_probs=77.9
Q ss_pred CCEEEEEEECCCCEEEEEECCCCEEEEECCCC-EEEEECEECCCEEEEEECCCCCEEEEEECCCCEEEEEEC-CCEEEEE
Q ss_conf 97899999039998999968995999968999-199910035959999993789969999699649999404-7210123
Q 000736 76 DSITAFDYLMEKEALIVGTSSGLLLLHSVDGN-ATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHD-WDLLYEN 153 (1323)
Q Consensus 76 ~~V~~i~~spd~~~La~as~dG~I~lw~~~~~-~~e~vg~~~~~I~~~awSPDG~~LA~~s~d~tI~l~t~~-~d~~~e~ 153 (1323)
+.+.+++|+|||+.|++++ +++|.+|+..+. ....+..|.+.|++++|||||++||+++.|++|++|+.. .......
T Consensus 19 g~~~~~~~spdg~~l~~~~-~~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~ 97 (611)
T 1nr0_A 19 GTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKT 97 (611)
T ss_dssp TCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEE
T ss_pred CCEEEEEECCCCCEEEECC-CCEEEEECCCCCCCCEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCEEEE
T ss_conf 8236976679999799679-997999457872427376589986599999999968999948997899489898415667
Q ss_pred EECCCCCCCEECCCCCCCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCEEEEEECCCCCEEEEECCCCCCEEEEEECCC
Q ss_conf 20346797400147624689985789990688579992255445588988999979999366641567985458999369
Q 000736 154 PLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPS 233 (1323)
Q Consensus 154 ~l~~~~~~~~Vs~tqf~~~d~~v~~IsWs~DG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~g~~~slawsPd 233 (1323)
.+.+|...+.+++|+|||+++|+++ .+. .....|++|+ .|....++.+|.+.+.+++|+|+
T Consensus 98 --------------~~~~~~~~v~~v~fs~dg~~l~~~~-~~~--~~~~~v~~wd--~~~~~~~l~gh~~~v~~v~f~p~ 158 (611)
T 1nr0_A 98 --------------TIPVFSGPVKDISWDSESKRIAAVG-EGR--ERFGHVFLFD--TGTSNGNLTGQARAMNSVDFKPS 158 (611)
T ss_dssp --------------EEECSSSCEEEEEECTTSCEEEEEE-CCS--SCSEEEEETT--TCCBCBCCCCCSSCEEEEEECSS
T ss_pred --------------EECCCCCCEEEEEECCCCCEEEEEE-CCC--CCEEEEEEEE--CCCCCCEECCCCCCCEEEEECCC
T ss_conf --------------6225578448999899999799998-997--7366999963--89976325478898369998899
Q ss_pred CC-EEEEEECCCCCCCCCEEEEEECCCEEEEEEEECCCCCCCEEEEEECCCCCEEEEEECCCCCCEEEEEEEEC
Q ss_conf 99-69999628999999939999179805879994068877589999945987258997168877499999207
Q 000736 234 GA-NIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSN 306 (1323)
Q Consensus 234 G~-lIAs~~~d~~~~~~~~V~l~e~nGl~~~ef~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~VqlW~~~n 306 (1323)
|. .||+++.|+ .|++|+....+.. ..+.. +...|.+++|||||++||+++.|+ +|++|+..+
T Consensus 159 ~~~~l~s~s~D~------~v~lwd~~~~~~~-~~l~~-H~~~V~~v~fspdg~~las~s~D~---~i~lwd~~~ 221 (611)
T 1nr0_A 159 RPFRIISGSDDN------TVAIFEGPPFKFK-STFGE-HTKFVHSVRYNPDGSLFASTGGDG---TIVLYNGVD 221 (611)
T ss_dssp SSCEEEEEETTS------CEEEEETTTBEEE-EEECC-CSSCEEEEEECTTSSEEEEEETTS---CEEEEETTT
T ss_pred CCEEEEEEECCC------EEEEEECCCCEEE-EEECC-CCCCEEEEEECCCCCEEEEEECCC---CEEEEECCC
T ss_conf 982999992898------0999979997576-65200-257169999979999899998999---199988999
No 7
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=1.00 E-value=1 Score=302.87 Aligned_cols=276 Identities=9% Similarity=0.086 Sum_probs=207.7
Q ss_pred CEEEEEEECCCCEEEEEECCCCEEEEECCCCCCCCCCEEECCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEECCCCEEE
Q ss_conf 21579662589899999379728998224433433311202222222235799997899999039998999968995999
Q 000736 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1323)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~V~~i~~spd~~~La~as~dG~I~l 101 (1323)
.+.+++|.+++..+++++.++.|..|+. .+++. +.+ +.+| .+.|.+++|+|+++.|++++.||.|++
T Consensus 617 ~v~~~~~s~~~~~l~s~~~d~~i~vw~~--~~~~~---~~~----~~~h----~~~v~~~~~s~~~~~l~s~~~d~~v~v 683 (1249)
T 3sfz_A 617 AVYHACFSQDGQRIASCGADKTLQVFKA--ETGEK---LLD----IKAH----EDEVLCCAFSSDDSYIATCSADKKVKI 683 (1249)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEET--TTCCE---EEE----ECCC----SSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred CEEEEEECCCCCEEEEEECCCEEEEEEC--CCCCE---EEE----ECCC----CCCEEEEEEECCCCEEEEEECCCEEEE
T ss_conf 4899998799998999948894999998--99978---887----6067----777899999269998999818995999
Q ss_pred EECCCCEE-EEECEECCCEEEEEECC--CCCEEEEEECCCCEEEEEEC-CCEEEEEEECCCCCCCEECCCCCCCCCCCEE
Q ss_conf 96899919-99100359599999937--89969999699649999404-7210123203467974001476246899857
Q 000736 102 HSVDGNAT-EVVGRVEGGVRFISPSP--DGDLLGVTTGFGQILVMTHD-WDLLYENPLEELAEGFDVHEPELSSSFSFKS 177 (1323)
Q Consensus 102 w~~~~~~~-e~vg~~~~~I~~~awSP--DG~~LA~~s~d~tI~l~t~~-~d~~~e~~l~~~~~~~~Vs~tqf~~~d~~v~ 177 (1323)
|+..+++. .....|.+.|.+++|+| ++.++++++.|++|.+|+.. +..... +.+|.+.+.
T Consensus 684 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~----------------~~~h~~~v~ 747 (1249)
T 3sfz_A 684 WDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNT----------------MFGHTNSVN 747 (1249)
T ss_dssp EETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEE----------------ECCCSSCEE
T ss_pred EECCCCCEEEEECCCCCCEEEEEEECCCCCEEEEEEECCCEEEEEECCCCCHHHE----------------ECCCCCCEE
T ss_conf 8779993689995899737999984089965999980897099998999634220----------------127779788
Q ss_pred EEEEECCCCEEEEEECCCCCCCCCCEEEEEECCCCCEEEEECC-------------CCCCEEEEEECCCCCEEEEEECCC
Q ss_conf 8999068857999225544558898899997999936664156-------------798545899936999699996289
Q 000736 178 PISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSEL-------------KAFMGAVLEWMPSGANIAAVYDRK 244 (1323)
Q Consensus 178 ~IsWs~DG~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~-------------~~g~~~slawsPdG~lIAs~~~d~ 244 (1323)
+++|+|||++++ +++ .++.|++|+..++....+... ....+.+++|+|+|+.+++++.
T Consensus 748 ~~~~sp~~~~l~-s~s------~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~-- 818 (1249)
T 3sfz_A 748 HCRFSPDDELLA-SCS------ADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAK-- 818 (1249)
T ss_dssp EEEECSSTTEEE-EEE------SSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEET--
T ss_pred EEEEECCCCEEE-EEE------CCCEEEEEECCCCCCCCEECCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEECC--
T ss_conf 999925999899-997------89859999688886553020232102467764456501799999789988999758--
Q ss_pred CCCCCCEEEEEECC-CEEEEEEEECCCCCCCEEEEEECCCCCEEEEEECCCCCCEEEEEEEECCEEEEEEEEEEECCCCE
Q ss_conf 99999939999179-80587999406887758999994598725899716887749999920775677769998259839
Q 000736 245 SENKCPSIVFYERN-GLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGI 323 (1323)
Q Consensus 245 ~~~~~~~V~l~e~n-Gl~~~ef~l~~~~~~~V~~laWSpDg~~LA~~~~d~~~~~VqlW~~~n~~wyLkqel~~~~~~~~ 323 (1323)
..+.+|+.. +..... +...+...|..++|+|++..+++++.++ .|++|+..+... ...+..+.....
T Consensus 819 -----~~v~~~d~~~~~~~~~--~~~~~~~~v~~~~~sp~~~~l~~~~~dg---~v~vwd~~~~~~--~~~~~~h~~~v~ 886 (1249)
T 3sfz_A 819 -----NKVLLFDIHTSGLLAE--IHTGHHSTIQYCDFSPYDHLAVIALSQY---CVELWNIDSRLK--VADCRGHLSWVH 886 (1249)
T ss_dssp -----TEEEEEETTTCCEEEE--EECSSSSCCCEEEECSSTTEEEEECSSS---CEEEEETTTTEE--EEEECCCSSCEE
T ss_pred -----CCEEEEEECCCCCEEE--ECCCCCCCEEEEEECCCCCEEEEEECCC---EEEEEECCCCCE--EEECCCCCCCEE
T ss_conf -----9599999568972357--7478777607999827888899994798---699998678956--532278766568
Q ss_pred EEEECCCCCCEEEEEECCCCEEEEE
Q ss_conf 9999159992799994499499999
Q 000736 324 RFMWHPTKPLQLICWTLDGQITTYN 348 (1323)
Q Consensus 324 ~v~W~p~~~~~L~~~~~~g~~~~~~ 348 (1323)
.+.|+|++.. +..++.+|.+..++
T Consensus 887 ~v~~spdg~~-l~s~s~dg~v~vw~ 910 (1249)
T 3sfz_A 887 GVMFSPDGSS-FLTASDDQTIRVWE 910 (1249)
T ss_dssp EEEECTTSSE-EEEEETTSCEEEEE
T ss_pred EEEECCCCCE-EEEEECCCEEEEEE
T ss_conf 9999899998-99995897289887
No 8
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=1.00 E-value=1 Score=295.85 Aligned_cols=234 Identities=10% Similarity=0.086 Sum_probs=106.9
Q ss_pred CCEEEEEEECCCCEEEEEECCCCEEEEECCCCE-EEEECEECCCEEEEEECCCCCEEEEEECCCCEEEEEE-CCCEEEEE
Q ss_conf 978999990399989999689959999689991-9991003595999999378996999969964999940-47210123
Q 000736 76 DSITAFDYLMEKEALIVGTSSGLLLLHSVDGNA-TEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTH-DWDLLYEN 153 (1323)
Q Consensus 76 ~~V~~i~~spd~~~La~as~dG~I~lw~~~~~~-~e~vg~~~~~I~~~awSPDG~~LA~~s~d~tI~l~t~-~~d~~~e~ 153 (1323)
+.|.+++|+|+++.|++++.||+|++|+..++. +..+..|.+.|.+++|||||++||+++.|++|.+|+. .+..+..
T Consensus 616 ~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~- 694 (1249)
T 3sfz_A 616 DAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHT- 694 (1249)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE-
T ss_pred CCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEE-
T ss_conf 6489999879999899994889499999899978887606777789999926999899981899599987799936899-
Q ss_pred EECCCCCCCEECCCCCCCCCCCEEEEEEECCC--CEEEEEECCCCCCCCCCEEEEEECCCCCEEEEECCCCCCEEEEEEC
Q ss_conf 20346797400147624689985789990688--5799922554455889889999799993666415679854589993
Q 000736 154 PLEELAEGFDVHEPELSSSFSFKSPISWRGDG--KYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWM 231 (1323)
Q Consensus 154 ~l~~~~~~~~Vs~tqf~~~d~~v~~IsWs~DG--~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~~g~~~slaws 231 (1323)
|.+|...+.+++|+|++ .+++ +++ .++.|++||..+|....+..+|.+.+.+++|+
T Consensus 695 ---------------~~~~~~~v~~~~~~~~~~~~~l~-sg~------~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~s 752 (1249)
T 3sfz_A 695 ---------------YDEHSEQVNCCHFTNKSNHLLLA-TGS------NDFFLKLWDLNQKECRNTMFGHTNSVNHCRFS 752 (1249)
T ss_dssp ---------------EECCSSCEEEEEECSSSSCCEEE-EEE------TTSCEEEEETTSSSEEEEECCCSSCEEEEEEC
T ss_pred ---------------ECCCCCCEEEEEEECCCCCEEEE-EEE------CCCEEEEEECCCCCHHHEECCCCCCEEEEEEE
T ss_conf ---------------95899737999984089965999-980------89709999899963422012777978899992
Q ss_pred CCCCEEEEEECCCCCCCCCEEEEEEC-CCEEEEEEEECC----------CCCCCEEEEEECCCCCEEEEEECCCCCCEEE
Q ss_conf 69996999962899999993999917-980587999406----------8877589999945987258997168877499
Q 000736 232 PSGANIAAVYDRKSENKCPSIVFYER-NGLERSSFDINE----------QIDSTVELLKWNCMSDLLAAVVRFEEYDSVK 300 (1323)
Q Consensus 232 PdG~lIAs~~~d~~~~~~~~V~l~e~-nGl~~~ef~l~~----------~~~~~V~~laWSpDg~~LA~~~~d~~~~~Vq 300 (1323)
|+|+++++++.+ ..|.+|+. ++.....+.... .....+.+++|+|||+.+++++.+ .+.
T Consensus 753 p~~~~l~s~s~d------g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~----~v~ 822 (1249)
T 3sfz_A 753 PDDELLASCSAD------GTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKN----KVL 822 (1249)
T ss_dssp SSTTEEEEEESS------SEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETT----EEE
T ss_pred CCCCEEEEEECC------CEEEEEECCCCCCCCEECCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEECCC----CEE
T ss_conf 599989999789------8599996888865530202321024677644565017999997899889997589----599
Q ss_pred EEEEECCEEEEEEEEEEECCCC-EEEEECCCCCCEEEEEECCCCEE
Q ss_conf 9992077567776999825983-99999159992799994499499
Q 000736 301 ICFFSNNHWYLKYEIRYLRRDG-IRFMWHPTKPLQLICWTLDGQIT 345 (1323)
Q Consensus 301 lW~~~n~~wyLkqel~~~~~~~-~~v~W~p~~~~~L~~~~~~g~~~ 345 (1323)
+|+..+... ...+....... ..+.|+|++.. +.+++.+|.+.
T Consensus 823 ~~d~~~~~~--~~~~~~~~~~~v~~~~~sp~~~~-l~~~~~dg~v~ 865 (1249)
T 3sfz_A 823 LFDIHTSGL--LAEIHTGHHSTIQYCDFSPYDHL-AVIALSQYCVE 865 (1249)
T ss_dssp EEETTTCCE--EEEEECSSSSCCCEEEECSSTTE-EEEECSSSCEE
T ss_pred EEEECCCCC--EEEECCCCCCCEEEEEECCCCCE-EEEEECCCEEE
T ss_conf 999568972--35774787776079998278888-99994798699
No 9
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=287.72 Aligned_cols=463 Identities=13% Similarity=0.099 Sum_probs=280.1
Q ss_pred CEEEEEEECCCCEEEEEECCCCEEEEECCCCCCCCCCEEECCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEECCCCEEE
Q ss_conf 21579662589899999379728998224433433311202222222235799997899999039998999968995999
Q 000736 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1323)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~V~~i~~spd~~~La~as~dG~I~l 101 (1323)
.+.+++|++++..|++++.|+.|+.|+. ...+. ... +. + .+.|.+++|+| ++.|++++.||+|++
T Consensus 19 ~V~~lafspdg~~lAsgs~Dg~I~lw~~--~~~~~---~~~----~~-~----~~~V~~l~fsp-g~~L~S~s~D~~v~l 83 (902)
T 2oaj_A 19 KPIAAAFDFTQNLLAIATVTGEVHIYGQ--QQVEV---VIK----LE-D----RSAIKEMRFVK-GIYLVVINAKDTVYV 83 (902)
T ss_dssp CEEEEEEETTTTEEEEEETTSEEEEECS--TTCEE---EEE----CS-S----CCCEEEEEEET-TTEEEEEETTCEEEE
T ss_pred CCEEEEECCCCCEEEEEECCCEEEEEEC--CCCEE---EEE----CC-C----CCCEEEEEECC-CCEEEEEECCCEEEE
T ss_conf 8489999799998999929798999968--99479---998----68-9----99779999908-988999989595999
Q ss_pred EECCCCEE-EEECEECCCEEEEEECCCCCEEEEEECCCCEEEEEECCCEEEEEEECCCCCCCEECC-CCCCCCCCCEEEE
Q ss_conf 96899919-991003595999999378996999969964999940472101232034679740014-7624689985789
Q 000736 102 HSVDGNAT-EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHE-PELSSSFSFKSPI 179 (1323)
Q Consensus 102 w~~~~~~~-e~vg~~~~~I~~~awSPDG~~LA~~s~d~tI~l~t~~~d~~~e~~l~~~~~~~~Vs~-tqf~~~d~~v~~I 179 (1323)
|++.++++ ..+. +.+.|++++|+|||++|++++.|++|.+|+..........+.... .. ..+.+|...+.++
T Consensus 84 Wd~~~~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~-----~~~~~~~~h~~~V~sl 157 (902)
T 2oaj_A 84 LSLYSQKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQ-----KSSFFPAARLSPIVSI 157 (902)
T ss_dssp EETTTCSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHH-----HHHTCSSSCCCCCCEE
T ss_pred EECCCCCEEEEEC-CCCCEEEEEECCCCCEEEEECCCCCEEEEECCCCCCCCCEECCCC-----CCCCCCCCCCCCEEEE
T ss_conf 9899996899974-899879999879999899994999299999999962650304321-----0002544578973899
Q ss_pred EEECCC-CEEEEEECCCCCCCCCCEEEEEECCCCCEEEEECCC------------------CCCEEEEEECCCCCEEEEE
Q ss_conf 990688-579992255445588988999979999366641567------------------9854589993699969999
Q 000736 180 SWRGDG-KYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELK------------------AFMGAVLEWMPSGANIAAV 240 (1323)
Q Consensus 180 sWs~DG-~~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e~~------------------~g~~~slawsPdG~lIAs~ 240 (1323)
+|+|++ ..++ +++ .++.+ +||..+++...+...+ .+.+.+++|+|+|++||++
T Consensus 158 ~~sp~~~~~l~-~g~------~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasg 229 (902)
T 2oaj_A 158 QWNPRDIGTVL-ISY------EYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITI 229 (902)
T ss_dssp EEETTEEEEEE-EEC------SSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEE
T ss_pred EECCCCCCEEE-EEE------CCCCE-EEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEE
T ss_conf 97669999899-991------89849-99877896579983355776777654433234567776899985999999999
Q ss_pred ECCCCCCCCCEEEEEEC-CCEEEEEEEEC---CC------------CCCCEEEEEEC----CCC-CEEEEEECCCC--CC
Q ss_conf 62899999993999917-98058799940---68------------87758999994----598-72589971688--77
Q 000736 241 YDRKSENKCPSIVFYER-NGLERSSFDIN---EQ------------IDSTVELLKWN----CMS-DLLAAVVRFEE--YD 297 (1323)
Q Consensus 241 ~~d~~~~~~~~V~l~e~-nGl~~~ef~l~---~~------------~~~~V~~laWS----pDg-~~LA~~~~d~~--~~ 297 (1323)
+.|+ .|++|+. +|.......+. .+ +...|.+++|+ ||+ .+|++++.+.. ..
T Consensus 230 s~Dg------~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~ 303 (902)
T 2oaj_A 230 HEDN------SLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQ 303 (902)
T ss_dssp ETTC------CEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCC
T ss_pred ECCC------EEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEECCCCCCCCCC
T ss_conf 8999------3999987899688888501234578777678888555677457999734999887899968877778885
Q ss_pred EEEEEEEECCE-------------E---EEEEEEEEECCCC-EEEEECCC---------CCCEEEEEECCCCEEEEEE--
Q ss_conf 49999920775-------------6---7776999825983-99999159---------9927999944994999999--
Q 000736 298 SVKICFFSNNH-------------W---YLKYEIRYLRRDG-IRFMWHPT---------KPLQLICWTLDGQITTYNF-- 349 (1323)
Q Consensus 298 ~VqlW~~~n~~-------------w---yLkqel~~~~~~~-~~v~W~p~---------~~~~L~~~~~~g~~~~~~~-- 349 (1323)
.+++|+.+... | ...+.+.+..... ..+.+.|+ .+..+.+.+.+|++..+++
T Consensus 304 ~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~ 383 (902)
T 2oaj_A 304 SLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPS 383 (902)
T ss_dssp CEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTT
T ss_pred EEEEEECCCCCCCCCCCHHHHHHHHCCCCCEEEEECCCCCCEEEEEECCCCCCCCCCCCCCEEEEEECCCCCEEEEECCC
T ss_conf 28999547898755542556546641745227874189995479999778898867787850699991798489997899
Q ss_pred ------------------------EEE------------------------------EE--ECCCEEEEEEECCEEEEEE
Q ss_conf ------------------------995------------------------------21--0899069999199799942
Q 000736 350 ------------------------IWT------------------------------TA--VMENSTALVIDGSKILVTP 373 (1323)
Q Consensus 350 ------------------------~~~------------------------------~~--~~d~~~v~viDg~~i~lt~ 373 (1323)
.++ ++ |++..++....+++|++|+
T Consensus 384 g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd 463 (902)
T 2oaj_A 384 GIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYD 463 (902)
T ss_dssp CCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCEEEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEE
T ss_conf 98556555689852235897248999974999998888604699975457857787533366675899965898389997
Q ss_pred CCCCCCCCC-CEEEEE------CCCCCEEEEEEECCCCCCEEEEEECCCCEEEEECCCCCCCC--------C--------
Q ss_conf 577679998-301210------28998899999229999999999889819999789988522--------2--------
Q 000736 374 LSLSLMPPP-MYLFSL------KFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLE--------D-------- 430 (1323)
Q Consensus 374 l~~~~vPpP-m~~~~l------~~~~~V~~VaFspdg~~~~LAs~s~Dg~I~lw~~~~~~~~~--------~-------- 430 (1323)
+.......+ .....+ .|...|++|+||||| +.||+++.||+|+||++.+..... .
T Consensus 464 ~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg--~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (902)
T 2oaj_A 464 ASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAET--LELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRF 541 (902)
T ss_dssp SSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTT--TEEEEEETTSCEEEEEEEECCC---------------CCSC
T ss_pred CCCCCCCCCCEEEEECHHHCCCCCCCCEEEEEECCCC--CEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCCCEEEEEC
T ss_conf 8776456773677501541377888764699963899--96999945857999992486555754557786651134551
Q ss_pred --CCCC----------------CEEEEEECCCCCCCCEEEEEEECCCEEEEEEECCCCCEEEEEEEECCCCCCCCCHHHH
Q ss_conf --3597----------------1247420244566837999994498499998269987028998312668644411244
Q 000736 431 --LEGT----------------EFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGATLNEDGLLGFYAQE 492 (1323)
Q Consensus 431 --~~g~----------------~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 492 (1323)
..++ ++.... ....+.+.+..++|+||| +||+++.+ .++.+|.+. +
T Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~l~~h~~~V~svafSpdG-~lAsgs~D--~tv~lwd~~--~---------- 605 (902)
T 2oaj_A 542 SLNNTNGVLVDVRDRAPTGVRQGFMPST-AVHANKGKTSAINNSNIG-FVGIAYAA--GSLMLIDRR--G---------- 605 (902)
T ss_dssp CGGGSSCSEEECGGGCCTTCSEEEEEEE-EECCCSCSEEEEEECBTS-EEEEEETT--SEEEEEETT--T----------
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCEEE-EEECCCCCEEEEEECCCC-EEEEEECC--CCEEEEECC--C----------
T ss_conf 3467965432242368988777601469-998688867799964876-89999589--769999888--9----------
Q ss_pred HHHHCCCCCCCCCCCCCCCCEEEEEEC-CCCCCEEEEEEC-----CCC---CCEEEEEEECCEEEEEEC
Q ss_conf 442114555234222455320343101-457708998107-----889---756999951875999925
Q 000736 493 IELACSEDHVQGLLTCAGWHAKVSTQI-PLEGLVIAIAPN-----NAK---KYSAFLQFHGGKISEYMS 552 (1323)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~i~~~-----~~~---~~~~~~q~~dG~v~~~~~ 552 (1323)
..++ ......... .+.+.|.++.++ | | +..++..+.||+|..|+.
T Consensus 606 ~~~~--------------~~~~~~~~~~gh~~~V~sv~Fs~~~~~~-Dg~~~~~l~sgs~D~tv~~wd~ 659 (902)
T 2oaj_A 606 PAII--------------YMENIREISGAQSACVTCIEFVIMEYGD-DGYSSILMVCGTDMGEVITYKI 659 (902)
T ss_dssp TEEE--------------EEEEGGGTCSSCCCCEEEEEEEEEECTT-SSSEEEEEEEEETTSEEEEEEE
T ss_pred CEEE--------------EEEEHHHHCCCCCCCEEEEEEEEEECCC-CCCCCEEEEEEECCCCEEEEEE
T ss_conf 8399--------------9702467264666613999999984178-9876338999956873999999
No 10
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=1.00 E-value=1 Score=283.91 Aligned_cols=386 Identities=14% Similarity=0.115 Sum_probs=272.0
Q ss_pred CCCCEECCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCCC----CCCCEEECCCCCCCCCCCCCCC
Q ss_conf 967210231333223456566215796625898999993797289982244334----3331120222222223579999
Q 000736 1 MNNLKLCAEVPLNLELQSKDEILQFSALDIEQNRLFFASSANNIYSAQLSSFQN----ERASIKTAISAEIEHIDLEPGD 76 (1323)
Q Consensus 1 MrNL~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~~ 76 (1323)
|.++.+.......+ ....+ .+.+++|++++..++++++ +.+..|++ .++ +. ... +.+| .+
T Consensus 1 ~~~~~~~~~~~~~~-~~~~~-~v~~~~~spdg~~l~~~~~-~~v~v~~~--~~~~~~~~~---~~~----~~~h----~~ 64 (615)
T 1pgu_A 1 MSSISLKEIIPPQP-STQRN-FTTHLSYDPTTNAIAYPCG-KSAFVRCL--DDGDSKVPP---VVQ----FTGH----GS 64 (615)
T ss_dssp -CCEEEEEEECCCC-CCCTT-CCCCCEEETTTTEEEEEET-TEEEEEEC--CSSCCSSCS---EEE----ECTT----TT
T ss_pred CCCCCHHHCCCCCC-CCCCC-CEEEEEECCCCCEEEEECC-CEEEEEEC--CCCCCCCCC---CEE----EECC----CC
T ss_conf 97223523159998-77658-5368998899997999359-84999977--788776514---318----8057----88
Q ss_pred C-EEEEEEEC--CCCEEEEEECCCCEEEEECCCC--------E-EEEECEECCCEEEEEECCCCCEEEEEECC----CCE
Q ss_conf 7-89999903--9998999968995999968999--------1-99910035959999993789969999699----649
Q 000736 77 S-ITAFDYLM--EKEALIVGTSSGLLLLHSVDGN--------A-TEVVGRVEGGVRFISPSPDGDLLGVTTGF----GQI 140 (1323)
Q Consensus 77 ~-V~~i~~sp--d~~~La~as~dG~I~lw~~~~~--------~-~e~vg~~~~~I~~~awSPDG~~LA~~s~d----~tI 140 (1323)
. |.+++|+| +++.|++++.||.|++|+..++ . ...+..|...|.+++|||||+.|++++.+ +.|
T Consensus 65 ~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v 144 (615)
T 1pgu_A 65 SVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVF 144 (615)
T ss_dssp SCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEE
T ss_pred CEEEEEEECCCCCCCEEEEECCCCEEEEEECCCCCCCCCCCCCCCCHHHCCCCCEEEEEEECCCCEEEEECCCCCCCCEE
T ss_conf 44999997967899889996489879997688876554455420001112566379999907999899931687775579
Q ss_pred EEEEECCCEEEEEEECCCCCCCEECCCCCCCCCCCEEEEEEECCCC-EEEEEECCCCCCCCCCEEEEEECCCCCEEEEEC
Q ss_conf 9994047210123203467974001476246899857899906885-799922554455889889999799993666415
Q 000736 141 LVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGK-YFATLSEFCNSSKLHKRLKVWERDSGTLQASSE 219 (1323)
Q Consensus 141 ~l~t~~~d~~~e~~l~~~~~~~~Vs~tqf~~~d~~v~~IsWs~DG~-~lAtvss~d~~~~~d~~irVWd~~~G~l~~t~e 219 (1323)
.+|+ .... +.. +.+|...+.+++|+|||. .++ +++ .++.+++|+..++++..+..
T Consensus 145 ~~~d-~~~~-----~~~-----------~~~~~~~v~~~~~~~~~~~~l~-~~~------~d~~v~vwd~~~~~~~~~~~ 200 (615)
T 1pgu_A 145 ISWD-SGNS-----LGE-----------VSGHSQRINACHLKQSRPMRSM-TVG------DDGSVVFYQGPPFKFSASDR 200 (615)
T ss_dssp EETT-TCCE-----EEE-----------CCSCSSCEEEEEECSSSSCEEE-EEE------TTTEEEEEETTTBEEEEEEC
T ss_pred EEEE-CCCC-----CEE-----------EECCCCCEEEEEECCCCCCEEE-EEE------CCCCEEEEECCCCCEEEEEC
T ss_conf 9997-8981-----031-----------3067743889998878996899-995------79959999699961013202
Q ss_pred CCCC---CEEEEEECCC-CCEEEEEECCCCCCCCCEEEEEEC-CCEEEEEEEECC---CCCCCEEEEEECCCCCEEEEEE
Q ss_conf 6798---5458999369-996999962899999993999917-980587999406---8877589999945987258997
Q 000736 220 LKAF---MGAVLEWMPS-GANIAAVYDRKSENKCPSIVFYER-NGLERSSFDINE---QIDSTVELLKWNCMSDLLAAVV 291 (1323)
Q Consensus 220 ~~~g---~~~slawsPd-G~lIAs~~~d~~~~~~~~V~l~e~-nGl~~~ef~l~~---~~~~~V~~laWSpDg~~LA~~~ 291 (1323)
.+.+ .+.+++|+|+ |+++++++.+ ..|.+|+. +|..... +.. .+...|..++|+ |++.|++++
T Consensus 201 ~~~~~~~~v~~~~~~~~~~~~l~~~~~d------g~i~vwd~~~~~~~~~--~~~~~~~~~~~v~~~~~~-~~~~l~~~~ 271 (615)
T 1pgu_A 201 THHKQGSFVRDVEFSPDSGEFVITVGSD------RKISCFDGKSGEFLKY--IEDDQEPVQGGIFALSWL-DSQKFATVG 271 (615)
T ss_dssp SSSCTTCCEEEEEECSTTCCEEEEEETT------CCEEEEETTTCCEEEE--CCBTTBCCCSCEEEEEES-SSSEEEEEE
T ss_pred CCCCCCCEEEEEEECCCCCCEEEEEECC------CEEEEEECCCCCEEEE--ECCCCCCCCCCEEEEEEC-CCCEEEEEC
T ss_conf 5677774289999789778889998689------8089998999978589--525444567755899981-899799984
Q ss_pred CCCCCCEEEEEEEECCEEEEEEEEEEEC---CCC-EEEEECCCCCCEEEEEECCCCEEEEEEEE-----E----------
Q ss_conf 1688774999992077567776999825---983-99999159992799994499499999999-----5----------
Q 000736 292 RFEEYDSVKICFFSNNHWYLKYEIRYLR---RDG-IRFMWHPTKPLQLICWTLDGQITTYNFIW-----T---------- 352 (1323)
Q Consensus 292 ~d~~~~~VqlW~~~n~~wyLkqel~~~~---~~~-~~v~W~p~~~~~L~~~~~~g~~~~~~~~~-----~---------- 352 (1323)
.|+ .|++|+..+... .+.+..+. ... ..+.|. ++. .+.+++.+|.+..++..- .
T Consensus 272 ~d~---~i~~wd~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~-~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~ 344 (615)
T 1pgu_A 272 ADA---TIRVWDVTTSKC--VQKWTLDKQQLGNQQVGVVAT-GNG-RIISLSLDGTLNFYELGHDEVLKTISGHNKGITA 344 (615)
T ss_dssp TTS---EEEEEETTTTEE--EEEEECCTTCGGGCEEEEEEE-ETT-EEEEEETTSCEEEEETTEEEEEEEECCCSSCEEE
T ss_pred CCC---CEEEEECCCCCE--EEEECCCCCCCCCCEEEEEEC-CCC-EEEEEECCCCEEEEECCCCCEEEEEECCCCCEEE
T ss_conf 899---489997888927--878847877545714699918-997-6999978997899988899288999477787899
Q ss_pred EEECCCEEEEEEECCEEEEEECCCCCCCCCCEEEEECCCCCEEEEEEECCCCCCEEEEEECCCCEEEEECCCCCCCCCCC
Q ss_conf 21089906999919979994257767999830121028998899999229999999999889819999789988522235
Q 000736 353 TAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLE 432 (1323)
Q Consensus 353 ~~~~d~~~v~viDg~~i~lt~l~~~~vPpPm~~~~l~~~~~V~~VaFspdg~~~~LAs~s~Dg~I~lw~~~~~~~~~~~~ 432 (1323)
+.+ .. ++....+..+++|+++ ++ . ..|...|.+++| +++ +.+++++.||.+.+|+.......
T Consensus 345 ~~~-~~-l~~~~~dg~i~~w~~~------~~--~-~~~~~~v~~~~~-~~~--~~l~~~~~d~~i~~~~~~~~~~~---- 406 (615)
T 1pgu_A 345 LTV-NP-LISGSYDGRIMEWSSS------SM--H-QDHSNLIVSLDN-SKA--QEYSSISWDDTLKVNGITKHEFG---- 406 (615)
T ss_dssp EET-TT-TEEEETTSCEEETTTT------EE--E-CCCCSCEEEEEC-CST--TCCEEEETTTEEEETTEEEEECS----
T ss_pred EEE-CC-CEEECCCCEEEEEECH------HH--C-CCCCCCEEEEEE-CCC--CEEEEEECCCCEEEEECCCCCCC----
T ss_conf 995-67-4898799959998752------41--5-755685179997-898--67999958997999886667636----
Q ss_pred CCCEEEEEECCCCCCCCEEEEEEECCCEEEEEEECCCCCEEEEEEE
Q ss_conf 9712474202445668379999944984999982699870289983
Q 000736 433 GTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGA 478 (1323)
Q Consensus 433 g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~~~~~~~~~~~ 478 (1323)
..+..++|+|++.+++++.. ..+.+|..
T Consensus 407 ---------------~~~~~~~~s~~~~~~~~~~~---~~~~~~~~ 434 (615)
T 1pgu_A 407 ---------------SQPKVASANNDGFTAVLTND---DDLLILQS 434 (615)
T ss_dssp ---------------SCEEEEEECSSSEEEEEETT---SEEEEEET
T ss_pred ---------------CCCEEEEECCCCCEEEEECC---CCEEEEEC
T ss_conf ---------------78469998289878999679---82699944
Done!